BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (282 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040280|gb|ACT57076.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score =  580 bits (1496), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA
Sbjct: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP
Sbjct: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA
Sbjct: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL
Sbjct: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK
Sbjct: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282


>gi|315121804|ref|YP_004062293.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495206|gb|ADR51805.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 300

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/286 (77%), Positives = 251/286 (87%), Gaps = 4/286 (1%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHT 56
           M L+   K+ KI S KDSHYAKLRRN+RD KK+Q  NQK    ++H +Q  NLFLYG+HT
Sbjct: 15  MKLMPPNKNNKISSPKDSHYAKLRRNYRDRKKIQLINQKDTLQNKHITQANNLFLYGIHT 74

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           V AALNNP RKIFQLLAT+N+L RL+WDAN PHPFPVK V P TID+IVGKEAVHQGLAL
Sbjct: 75  VGAALNNPQRKIFQLLATRNSLTRLNWDANRPHPFPVKIVSPSTIDQIVGKEAVHQGLAL 134

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           ET PL SPTLD ++NSQL+++LDH+NDPHN+GAILRS+VAF C GIITT+RYSPSESAVL
Sbjct: 135 ETTPLSSPTLDTIQNSQLIIILDHINDPHNVGAILRSSVAFGCGGIITTRRYSPSESAVL 194

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AKSASGALEHIPYIRI NLTDAL K+H+W FQTIGLSS+S  PLE+EIK+DKIALILGAE
Sbjct: 195 AKSASGALEHIPYIRIGNLTDALHKIHAWQFQTIGLSSESNNPLEKEIKSDKIALILGAE 254

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GKGLR KTQETATS+AHL+MPGIIK+LNVSNAAAVALYITQNHFAK
Sbjct: 255 GKGLRQKTQETATSIAHLNMPGIIKSLNVSNAAAVALYITQNHFAK 300


>gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
 gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 295

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/283 (53%), Positives = 195/283 (68%), Gaps = 14/283 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKM-------QSFNQKSRHTSQ-------PENLFLYGVHTVSA 59
           S +D+HYA LRR  RD K+        Q   +++R           P+ + LYG+HTV A
Sbjct: 10  STRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGADDWKPPQLAPDQVHLYGLHTVRA 69

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+NP R++ +L  T NA ARLD       PFPV+ V PQ IDK++G EA+HQG+ LET 
Sbjct: 70  ALSNPQRQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQEIDKVLGPEAIHQGVMLETR 129

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    LDA++ S L++VLD V DPHN+GAI+RSAVAF+   +ITT R+SP+ES VLAKS
Sbjct: 130 PLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPTESGVLAKS 189

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+I+NL D L ++H  GF ++GL S+   P+EQ     KIAL+LGAEGKG
Sbjct: 190 ASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIALVLGAEGKG 249

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ    K
Sbjct: 250 LRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292


>gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
 gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
          Length = 295

 Score =  297 bits (760), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/283 (53%), Positives = 195/283 (68%), Gaps = 14/283 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKM-------QSFNQKSRHTSQ-------PENLFLYGVHTVSA 59
           S +D+HYA LRR  RD K+        Q   +++R           P+ + LYG+HTV A
Sbjct: 10  STRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGAEDWKPPQLAPDQVHLYGLHTVRA 69

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+NP R++ +L  T NA ARLD       PFPV+ V PQ IDK++G EA+HQG+ LET 
Sbjct: 70  ALSNPERQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQDIDKVLGPEAIHQGVMLETR 129

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    LDA++ S L++VLD V DPHN+GAI+RSAVAF+   +ITT R+SP+ES VLAKS
Sbjct: 130 PLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPTESGVLAKS 189

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+I+NL D L ++H  GF ++GL S+   P+EQ     KIAL+LGAEGKG
Sbjct: 190 ASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIALVLGAEGKG 249

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ    K
Sbjct: 250 LRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292


>gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
 gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
          Length = 293

 Score =  291 bits (745), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 150/282 (53%), Positives = 197/282 (69%), Gaps = 13/282 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S +DSHYA LRR  RD K+ +        QK R ++         P+ +FLYG+HTV AA
Sbjct: 10  SDRDSHYATLRRQVRDAKRERGEIPTPQPQKRRKSNADWTPPPIAPDQVFLYGLHTVRAA 69

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LNNP RK  +L  T+NAL RL+       PFPV+ V PQ +DK +G EA+HQG+ LET P
Sbjct: 70  LNNPERKPIKLSLTQNALVRLEIGPVDALPFPVEIVTPQDLDKHLGPEAIHQGVMLETRP 129

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A++ S LL+VLD V DPHN+GAI+R+AVAF    +ITT R+SP+ES VLAKSA
Sbjct: 130 LPPRRLEALKESPLLLVLDQVTDPHNVGAIMRTAVAFGAGAVITTMRHSPTESGVLAKSA 189

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL +AL ++H  GF +IGL S+  +PLE+    DK+AL+LG+EGKGL
Sbjct: 190 SGALELIPYIQITNLAEALGELHKLGFVSIGLDSEGPRPLEETFSGDKLALVLGSEGKGL 249

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           R KT++T  ++A L MPG IK+LNVSNAAA+ALY ++    +
Sbjct: 250 RQKTRDTVNALARLDMPGEIKSLNVSNAAAIALYASRQFLLR 291


>gi|150396189|ref|YP_001326656.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
 gi|150027704|gb|ABR59821.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium medicae
           WSM419]
          Length = 291

 Score =  288 bits (738), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 148/280 (52%), Positives = 197/280 (70%), Gaps = 13/280 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLYGVHTVSAA 60
           S +D+HYA LRR HRD ++ +      R   +             P+ + LYG+HTV AA
Sbjct: 10  SARDTHYANLRRAHRDGRRERGEIPTPRQDKRGKPSADWKPPALAPDQVLLYGLHTVRAA 69

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP R+I +L  T+NA ARLD   +   PFPV+TV PQ +D+I+G +A+HQG+ LET P
Sbjct: 70  LDNPERRIIRLSVTQNAAARLDLGDSAALPFPVETVTPQELDRILGPDAIHQGVMLETRP 129

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+R+  L++VLD V DPHN+GAI+RSAVAF    +ITT R+SP+ES VLAKSA
Sbjct: 130 LPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKSA 189

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+ISNL D + ++H+ GF TIGL S+  +PLE     DKIAL+LG+EGKGL
Sbjct: 190 SGALELIPYIQISNLADTIDELHALGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKGL 249

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           R KT++T  ++A L MPG IK+LNVSNAAA+A+Y  ++H 
Sbjct: 250 RQKTRQTVKALARLDMPGAIKSLNVSNAAAIAMYAARHHL 289


>gi|86357288|ref|YP_469180.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86281390|gb|ABC90453.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 296

 Score =  288 bits (737), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 149/268 (55%), Positives = 191/268 (71%), Gaps = 16/268 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK R  ++        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L+NP RK  +L  T+NALARL+ D   L  PF +  V P  IDK++G EA+HQG+ LET 
Sbjct: 76  LDNPERKKIKLFTTQNALARLEIDVETLGIPFEI--VSPHEIDKVLGPEAIHQGVMLETR 133

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKS
Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGKG
Sbjct: 194 ASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKVALVLGSEGKG 253

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT+ET T++A L MPG IK+LNVSN
Sbjct: 254 LRQKTRETVTALARLDMPGAIKSLNVSN 281


>gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi
           ATCC 49188]
          Length = 286

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 141/274 (51%), Positives = 189/274 (68%), Gaps = 10/274 (3%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD K + +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 11  KDSHYARLRRQHRDQKAV-TEGKSPRKPQRPSISAGAVTEGTVRLYGLHTVRAAVENPER 69

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 70  KILRMRATRNGFARLEIGEAESLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRARKL 129

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +++S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 130 SELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEM 189

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I +I + NL +A++++HS GFQTIGL S+  + +E  +   +IAL+LGAEGKGLR KT+E
Sbjct: 190 ISHIEVRNLAEAIEELHSLGFQTIGLDSEGPQEMEATLSGGRIALVLGAEGKGLRQKTRE 249

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 250 TVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|190891338|ref|YP_001977880.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
           652]
 gi|190696617|gb|ACE90702.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
           652]
          Length = 296

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 147/267 (55%), Positives = 190/267 (71%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +  ++        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D   P   P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET T++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281


>gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
           intermedium LMG 3301]
 gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
           intermedium LMG 3301]
          Length = 303

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/276 (52%), Positives = 192/276 (69%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 28  KDSHYARLRRQHRD-QKAGTEGKSPRKPQRPSISASAVTEGTVRLYGLHTVRAAVENPER 86

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           +I ++LAT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 87  RILRMLATRNGFARLEIGEAESLPFPVEIVEPRDIDKETGSEAVHQGVMIEAEPLRARKL 146

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +++S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 147 SELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++HS GFQTIGL  DS+ PLE E  +   +IAL+LGAEGKGLR KT
Sbjct: 207 ISHIEVRNLAEAIEELHSLGFQTIGL--DSEGPLEMEATLSGGRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|254719306|ref|ZP_05181117.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. 83/13]
 gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
 gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
          Length = 286

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 11  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 70  KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRARKL 129

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP ES VLAK+ASGALE 
Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQESGVLAKAASGALEL 189

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|189024398|ref|YP_001935166.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
 gi|254689467|ref|ZP_05152721.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 6
           str. 870]
 gi|254697605|ref|ZP_05159433.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254730496|ref|ZP_05189074.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 4
           str. 292]
 gi|256257714|ref|ZP_05463250.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 9
           str. C68]
 gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
           str. 9-941]
 gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
 gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
          Length = 286

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/276 (52%), Positives = 192/276 (69%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 11  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+   +   PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 70  KILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 189

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
           2308 A]
 gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
           2308 A]
 gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 303

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/276 (52%), Positives = 192/276 (69%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 28  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+   +   PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 87  KILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC
           25840]
          Length = 303

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 28  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 87  KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E+    ++IAL+LGAEGKGLR KT
Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEVTLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|260460674|ref|ZP_05808924.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
           opportunistum WSM2075]
 gi|259033251|gb|EEW34512.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
           opportunistum WSM2075]
          Length = 282

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/272 (55%), Positives = 187/272 (68%), Gaps = 6/272 (2%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP-EN-----LFLYGVHTVSAALN 62
           S K  + KD+HYAKLRR  RD K   +   K R    P EN     + LYG+HTV AAL+
Sbjct: 2   SNKTNTPKDTHYAKLRRAFRDEKSGGAPAFKPRQPVPPGENAGDGLVRLYGLHTVRAALD 61

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           NP R+I ++L T+NA  RL+       PF  + V P+ IDKI G +AVHQG+ +E  PL 
Sbjct: 62  NPRRRIKKMLVTRNAAERLEIADLAALPFSAELVEPRDIDKITGSDAVHQGVLIEAEPLK 121

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              LDA+ +++L++VLD V DPHN+GAILRSAVAF    +ITT R+SP ES VLAKSASG
Sbjct: 122 PKRLDALGDTKLVLVLDQVTDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALEHI  I + NL DAL ++H  GFQTIGL SD    LE     D++AL+LGAEGKGLR 
Sbjct: 182 ALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRVALVLGAEGKGLRQ 241

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           KT+ET T++A L MPG I++LNVSNAAAV+LY
Sbjct: 242 KTRETVTTLARLDMPGAIRSLNVSNAAAVSLY 273


>gi|15965091|ref|NP_385444.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307315061|ref|ZP_07594646.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           BL225C]
 gi|15074271|emb|CAC45917.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306898900|gb|EFN29550.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           BL225C]
          Length = 291

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/280 (52%), Positives = 195/280 (69%), Gaps = 13/280 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLYGVHTVSAA 60
           S +D+HYA LRR HRD ++ +      R   +             P+ + LYG+HTV AA
Sbjct: 10  SARDTHYANLRRAHRDARRERGEIPTPRQDKRAKLSADWKPPALAPDQVLLYGLHTVRAA 69

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP R+I +L  T+NA ARLD       PFP +TV PQ +D+I+G +A+HQG+ LET P
Sbjct: 70  LDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQGVMLETQP 129

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+R+  L++VLD V DPHN+GAI+RSAVAF    +ITT R+SP+ES VLAKSA
Sbjct: 130 LPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKSA 189

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL D L+++H  GF TIGL S+  +PLE     DKIAL+LG+EGKGL
Sbjct: 190 SGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKGL 249

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           R KT++T  ++A L MPG IK+LNVSNAAA+A+Y  ++H 
Sbjct: 250 RQKTRQTVKALARLDMPGAIKSLNVSNAAAIAMYAARHHL 289


>gi|307322674|ref|ZP_07602003.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           AK83]
 gi|306891673|gb|EFN22530.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           AK83]
          Length = 291

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/280 (52%), Positives = 195/280 (69%), Gaps = 13/280 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLYGVHTVSAA 60
           S +D+HYA LRR HRD ++ +      R   +             P+ + LYG+HTV AA
Sbjct: 10  SARDTHYANLRRAHRDARRERGEIPTPRQDKRGKPPADWKPPALAPDQVLLYGLHTVRAA 69

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP R+I +L  T+NA ARLD       PFP +TV PQ +D+I+G +A+HQG+ LET P
Sbjct: 70  LDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQGVMLETQP 129

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+R+  L++VLD V DPHN+GAI+RSAVAF    +ITT R+SP+ES VLAKSA
Sbjct: 130 LPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTESGVLAKSA 189

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL D L+++H  GF TIGL S+  +PLE     DKIAL+LG+EGKGL
Sbjct: 190 SGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALVLGSEGKGL 249

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           R KT++T  ++A L MPG IK+LNVSNAAA+A+Y  ++H 
Sbjct: 250 RQKTRQTVKALARLDMPGAIKSLNVSNAAAIAMYAARHHL 289


>gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28]
 gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           M5-90]
          Length = 303

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 28  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 87  KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
           Cudo]
 gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
           Cudo]
          Length = 303

 Score =  285 bits (730), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 28  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 87  KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 206

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
 gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
          Length = 286

 Score =  285 bits (730), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 11  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPTIAASAVAEGTVRLYGLHTVRAAVENPQR 69

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 70  KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 189

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330]
 gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365]
 gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
 gi|254693953|ref|ZP_05155781.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 3
           str. Tulya]
 gi|254701991|ref|ZP_05163819.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 5
           str. 513]
 gi|254704533|ref|ZP_05166361.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 3
           str. 686]
 gi|254706572|ref|ZP_05168400.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           M163/99/10]
 gi|254710319|ref|ZP_05172130.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           B2/94]
 gi|254714316|ref|ZP_05176127.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M644/93/1]
 gi|254717753|ref|ZP_05179564.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M13/05/1]
 gi|256031813|ref|ZP_05445427.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           M292/94/1]
 gi|256061333|ref|ZP_05451477.1| RNA methyltransferase, TrmH family, group 3 [Brucella neotomae
           5K33]
 gi|256113812|ref|ZP_05454605.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           bv. 3 str. Ether]
 gi|256159988|ref|ZP_05457701.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M490/95/1]
 gi|256255213|ref|ZP_05460749.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti B1/94]
 gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
           4915]
 gi|260168947|ref|ZP_05755758.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. F5/99]
 gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
 gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330]
 gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC
           23365]
 gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           ATCC 23457]
 gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
           4915]
 gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
          Length = 286

 Score =  285 bits (730), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 11  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 70  KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 189

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|327191383|gb|EGE58409.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli
           CNPAF512]
          Length = 296

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 148/268 (55%), Positives = 191/268 (71%), Gaps = 16/268 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +  ++        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L+NP RK  +L  T+NALARL+ D   L  PF +  V P  IDK++G EA+HQG+ LET 
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDVEALDIPFEI--VAPHEIDKVLGPEAIHQGVMLETR 133

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKS
Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGKG
Sbjct: 194 ASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKG 253

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT+ET T++A L MPG IK+LNVSN
Sbjct: 254 LRQKTRETVTALARLDMPGAIKSLNVSN 281


>gi|319783294|ref|YP_004142770.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 282

 Score =  284 bits (727), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 146/275 (53%), Positives = 193/275 (70%), Gaps = 6/275 (2%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP-EN-----LFLYGVHTVSAALN 62
           S+K  + KD+HYAKLRR +RD K   +   + R    P EN     + LYG+HTV AAL+
Sbjct: 2   SDKTNTPKDTHYAKLRRAYRDEKSGGAPAFRPRQPVPPGENAADGLVRLYGLHTVRAALD 61

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           NP RKI ++L T+NA  RL+       PF  + V P+ IDKI G +AVHQG+ +E  PL 
Sbjct: 62  NPRRKIRKMLVTRNAAERLEIADLAALPFKTELVEPRDIDKITGSDAVHQGVLIEAEPLK 121

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +  LDA+ +++L++VLD + DPHN+GAILRSAVAF    +ITT R+SP ES VLAKSASG
Sbjct: 122 AKRLDALGDAKLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALEHI  I + NL +AL ++H  GF+T+GL SD+   LE+    +KIAL+LGAEGKGLR 
Sbjct: 182 ALEHIDQIEVKNLAEALGQLHEAGFRTMGLDSDAPAELEKSFAGEKIALVLGAEGKGLRQ 241

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           KT+ET T++A L MPG I +LNVSNAAA++LY+ +
Sbjct: 242 KTRETVTTLARLDMPGAIHSLNVSNAAAISLYVAR 276


>gi|218682806|ref|ZP_03530407.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium etli CIAT
           894]
          Length = 296

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/268 (55%), Positives = 189/268 (70%), Gaps = 16/268 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK R            P+ + LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPPPQKRRRGGDDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L+NP RK  +L  T+NALARL+ DA  L  PF +  V PQ IDK++G EA+HQG+ LET 
Sbjct: 76  LDNPERKKIKLFVTQNALARLEIDAETLGIPFEI--VSPQEIDKVLGPEAIHQGVMLETR 133

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKS
Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+++NL DAL ++H  GF TIGL S+   PLE     +K+AL+LG+EGKG
Sbjct: 194 ASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKLALVLGSEGKG 253

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT+ET  ++A L MPG IK+LNVSN
Sbjct: 254 LRQKTRETVNALARLDMPGAIKSLNVSN 281


>gi|17987024|ref|NP_539658.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
          Length = 303

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 190/276 (68%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 28  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 86

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 87  KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 146

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT  +SP E+ VLAK+ASGALE 
Sbjct: 147 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAASGALEL 206

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 207 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|256044897|ref|ZP_05447801.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 286

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 190/276 (68%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 11  KDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 70  KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT  +SP E+ VLAK+ASGALE 
Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAASGALEL 189

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445]
 gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC
           23445]
          Length = 286

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 190/276 (68%), Gaps = 14/276 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------NLFLYGVHTVSAALNNPSR 66
           KDSHYA+LRR H D +K  +  +  R   +P           + LYG+HTV AA+ NP R
Sbjct: 11  KDSHYARLRRQHHD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQR 69

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L
Sbjct: 70  KILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKL 129

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGALE 
Sbjct: 130 SELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGALEL 189

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
           I +I + NL +A++++H+ GFQTIGL  DS+ PLE E  +  ++IAL+LGAEGKGLR KT
Sbjct: 190 IAHIEVRNLAEAIEELHTLGFQTIGL--DSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 296

 Score =  281 bits (719), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 146/268 (54%), Positives = 188/268 (70%), Gaps = 16/268 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +   +        P+ + LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPQAQKRKRGGEDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L+NP RK  +L  T+NALARL+ D   L  PF +  V PQ IDK++G EA+HQG+ LET 
Sbjct: 76  LDNPERKKIKLFVTQNALARLEVDVEALGIPFEI--VSPQEIDKVLGPEAIHQGVMLETR 133

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A++ S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKS
Sbjct: 134 PLPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+++NL DAL ++H  GF TIGL S+   PLE     +K+AL+LG+EGKG
Sbjct: 194 ASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKG 253

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT+ET  ++A L MPG IK+LNVSN
Sbjct: 254 LRQKTRETVNALARLDMPGSIKSLNVSN 281


>gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 310

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/265 (53%), Positives = 184/265 (69%), Gaps = 8/265 (3%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           +D+HYA LRR HRD K+    N        PE L LYG+HTV+AAL NP R   +LL T+
Sbjct: 50  RDTHYANLRRAHRDRKRELKPNA-------PEPLLLYGLHTVAAALQNPDRIRHRLLITR 102

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           NA ARL+ D +     P++ V P+ +D+++G EAVHQG  LET PL    LDA+ ++ LL
Sbjct: 103 NARARLELD-DAEIDCPIEQVEPKDLDRLLGGEAVHQGACLETEPLEPLRLDALGDATLL 161

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DPHN+GAILRSA AF+ DG+ITT R+SP ES VLAK+ASGALEH+  I + NL
Sbjct: 162 LVLDQVTDPHNVGAILRSATAFAADGLITTSRHSPRESGVLAKAASGALEHVRQIEVRNL 221

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + L+++   GF+TIGL S+ +   EQ I+ +KIA++LGAEGKGLR KT+ T   +A L 
Sbjct: 222 AETLERLSKLGFRTIGLDSEGESDFEQAIEGEKIAVVLGAEGKGLRQKTRATCDVLARLE 281

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           MPG I +LNVSNAAAVALY  +   
Sbjct: 282 MPGAIHSLNVSNAAAVALYAIRRRL 306


>gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 296

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 146/268 (54%), Positives = 189/268 (70%), Gaps = 16/268 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK R  ++        P+ + LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L+NP RK  +L  T+NALARL+ D   L  PF +  V PQ IDK++G EA+HQG+ LET 
Sbjct: 76  LDNPERKKIKLFVTQNALARLEVDVETLGIPFEI--VSPQEIDKVLGPEAIHQGVMLETR 133

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKS
Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+++NL DAL ++H  GF TIGL S+    LE     +K+AL+LG+EGKG
Sbjct: 194 ASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAALEGTFSGEKVALVLGSEGKG 253

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT+ET  ++A L MPG IK+LNVSN
Sbjct: 254 LRQKTRETVNALARLDMPGAIKSLNVSN 281


>gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 296

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/268 (54%), Positives = 187/268 (69%), Gaps = 16/268 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF------NQKSRHTSQ-------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        +++ R           P+ + LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPQPHKRKRGGDDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L+NP RK   L  T+NALARL+ D   L  PF +  V PQ IDK++G EA+HQG+ LET 
Sbjct: 76  LDNPERKKITLFVTQNALARLEVDVEALGMPFEI--VSPQEIDKVLGPEAIHQGVMLETR 133

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A++ S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKS
Sbjct: 134 PLPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKS 193

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+++NL DAL ++H  GF TIGL S+   PLE     +K+AL+LG+EGKG
Sbjct: 194 ASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKG 253

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT+ET  ++A L MPG IK+LNVSN
Sbjct: 254 LRQKTRETVNALARLDMPGAIKSLNVSN 281


>gi|163759379|ref|ZP_02166465.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
           DFL-43]
 gi|162283783|gb|EDQ34068.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
           DFL-43]
          Length = 300

 Score =  275 bits (704), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 135/281 (48%), Positives = 190/281 (67%), Gaps = 16/281 (5%)

Query: 16  KDSHYAKLRRNHRDYKK-------MQSFNQKS---------RHTSQPENLFLYGVHTVSA 59
           +D+HYAKLRR+HRD K+       +Q   ++                E+++LYG+HTV A
Sbjct: 14  RDTHYAKLRRSHRDAKREREGLPPVQPRGKRDLPARKGALYAERGAAESVYLYGLHTVRA 73

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+NP+R+I  L AT+NAL RL+   +   PFPV+ V PQ ID+++G +AVHQG+ LE  
Sbjct: 74  ALDNPARQITSLKATRNALMRLEIAEDAELPFPVELVAPQEIDRLLGDDAVHQGVLLEAR 133

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL +  L  + ++ L+++LD V DPHN+GAI+RSAVAF    ++TT+R+SP ES VLAK+
Sbjct: 134 PLSARPLTDLGDATLVVILDQVTDPHNVGAIMRSAVAFGAGALVTTQRHSPQESGVLAKA 193

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE I +I + NL  A++ + + GF T+GL S+   P+E  +K  +IA++LGAEGKG
Sbjct: 194 ASGALEMIDHIEVRNLASAIEDIKAQGFTTVGLDSEGPSPIEAGLKGARIAMVLGAEGKG 253

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LR KT+ET   +  L MPG IK+LNVSNA A+ALY  Q + 
Sbjct: 254 LRQKTRETVDVLTRLDMPGAIKSLNVSNATAIALYAAQQYL 294


>gi|90417781|ref|ZP_01225693.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337453|gb|EAS51104.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 284

 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/275 (51%), Positives = 184/275 (66%), Gaps = 10/275 (3%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKS---RHTSQPEN------LFLYGVHTVSAALNNPSR 66
           KD+HYA LRR HRD K+       +   +   QP        + LYG+HTV+AALNNP R
Sbjct: 11  KDTHYATLRRAHRDRKRTDGGAAPAGALKRRPQPGRPAPAGRVRLYGIHTVAAALNNPHR 70

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           K+  LL T+NALARL+   +     PV+ V P+ +D  +G EAVHQG+ LET PL +  L
Sbjct: 71  KLHSLLVTRNALARLEIAEDAIR-CPVEMVEPKRLDAELGGEAVHQGVMLETEPLPAIRL 129

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +  ++L++VLD V DPHN+GAILRSA AF  D ++TT R+SP ES VLAK+ASGALEH
Sbjct: 130 SDLGKARLVIVLDQVTDPHNVGAILRSATAFGADALVTTARHSPQESGVLAKAASGALEH 189

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +  I + NL DAL  +   GF+TIGL SD  +  E  +  ++IA++LGAEGKGLR KTQ 
Sbjct: 190 VTQIEVVNLADALSALSKQGFRTIGLDSDGPESFEASLSGERIAIVLGAEGKGLRQKTQA 249

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           T  ++A L MPG I++LNVSNAAA+ALY T+ H  
Sbjct: 250 TVDALARLEMPGAIRSLNVSNAAAIALYATRRHLG 284


>gi|227821738|ref|YP_002825708.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii
           NGR234]
 gi|227340737|gb|ACP24955.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii
           NGR234]
          Length = 291

 Score =  275 bits (703), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 147/290 (50%), Positives = 197/290 (67%), Gaps = 14/290 (4%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLF 50
           +SK KS    S +DSHYA LRR HRD ++ +      R   +             P+ +F
Sbjct: 1   MSKDKSGD-KSARDSHYATLRRAHRDARRERGEIPTPRPDKRRKLPADWKPPALAPDEVF 59

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           LYG+HTV AAL+NP R I +L  T+NA ARL+        FPV+ V PQ +D+ +G +A+
Sbjct: 60  LYGLHTVRAALDNPDRTIIRLRVTQNAAARLELGDLSALRFPVEIVTPQDLDRALGPDAI 119

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG+ LET PL    L+A+ +  L+++LD V DPHN+GAI+RSAVAF    +ITT R+SP
Sbjct: 120 HQGVMLETRPLPHRKLEALSDCPLILLLDQVTDPHNVGAIMRSAVAFEAGALITTMRHSP 179

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           +ES VLAKSASGALE IPYI+I+NL D ++++H  GFQTIGL S+  +PLE      K+A
Sbjct: 180 TESGVLAKSASGALELIPYIQITNLADTIEELHKLGFQTIGLDSEGPQPLEDTFSGGKVA 239

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L+LG+EGKGLR KT++T T++A L MPG IK+LNVSNAAA+A+Y  + H 
Sbjct: 240 LVLGSEGKGLRQKTRQTVTALARLDMPGAIKSLNVSNAAAIAMYAARQHL 289


>gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 302

 Score =  275 bits (702), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 142/268 (52%), Positives = 183/268 (68%), Gaps = 14/268 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ---------PENLFLYGVHTVSA 59
           S KD+HYA LRR HRD K+ +        QK +             P+ ++LYG+HTV A
Sbjct: 20  SAKDTHYATLRRAHRDAKRERGEIPTPVPQKRKRPGADDWKPPALAPDQVYLYGLHTVRA 79

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL NP RK  +L  T+NAL RL+         P + V PQ IDK++G EA+HQG+ LET 
Sbjct: 80  ALANPERKNIKLSTTQNALVRLEIGPVDALGIPFEIVSPQDIDKVLGPEAIHQGVMLETR 139

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF    +ITT+R+SP+ES VLAKS
Sbjct: 140 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFDAAAVITTQRHSPTESGVLAKS 199

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGALE IPYI+I+NL DAL ++H  GF +IGL S+   PLE     +K+AL+LG+EGKG
Sbjct: 200 ASGALELIPYIQITNLADALGELHRLGFVSIGLDSEGPAPLEGTFSGEKVALVLGSEGKG 259

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSN 267
           LR KT+ET  ++A L MPG IK+LNVSN
Sbjct: 260 LRQKTRETVNALARLDMPGAIKSLNVSN 287


>gi|110633438|ref|YP_673646.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110284422|gb|ABG62481.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 276

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/274 (50%), Positives = 192/274 (70%), Gaps = 5/274 (1%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF-LYGVHTVSAALNNPSRKI 68
           +K  + KDSHYA+LRR HR+     + N+++     PE +  LYG+HTV AA++NP+R I
Sbjct: 5   KKTGTPKDSHYARLRRAHRERT---APNERA-GADLPEGIVRLYGLHTVRAAIDNPARSI 60

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            Q+L T+NA  RL        PFPV+ V P+ ID +VG +AVHQG+ +E           
Sbjct: 61  RQMLVTRNAAQRLGIADPSTLPFPVEIVEPKAIDALVGADAVHQGVLVEATARTPKPFSG 120

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + ++ L++VLD V DPHN+GAI+RSAVAF  D ++TT R+SP+ES VLAK+ASGALEHI 
Sbjct: 121 LEDASLVLVLDQVTDPHNVGAIMRSAVAFGADALVTTARHSPAESGVLAKAASGALEHID 180

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +I + NL +A++++H+ GF T+GL S+  + LE+ ++  KIAL+LG+EGKGLR KT+ET 
Sbjct: 181 HIEVRNLANAIEELHAAGFLTVGLDSEGPQRLEKTLQGKKIALVLGSEGKGLRQKTRETV 240

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            ++A L MPG I +LNVSNAAAVALYI +   A+
Sbjct: 241 RALARLDMPGAIHSLNVSNAAAVALYIARRSLAE 274


>gi|319407391|emb|CBI81042.1| tRNA/rRNA metyltransferase [Bartonella sp. 1-1C]
          Length = 272

 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 143/273 (52%), Positives = 185/273 (67%), Gaps = 11/273 (4%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKI 68
           LKDSHYA+LRR +R+ K   SF Q + +  QP      E ++LYG+H V AAL NP R +
Sbjct: 2   LKDSHYARLRRRYRNTKG--SFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRVL 59

Query: 69  FQLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             L AT NAL RL   ++N+    PV +  P+ ++  VG+EAVHQG+ LET PL S  L 
Sbjct: 60  RHLYATPNALKRLGINESNIA--CPVTSCLPKKLEMFVGREAVHQGIVLETEPLKSRPLS 117

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            + N+ L++++D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I
Sbjct: 118 ELTNTDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELI 177

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            YI + NL   LQ++H   F + GL S+ K PLE  +K  KI+LILGAEGKGLR KT+E 
Sbjct: 178 EYITVRNLFKTLQELHQMNFISFGLDSEGKFPLETALKGTKISLILGAEGKGLRQKTREN 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A S+A L +PG IK+LNVSNAAA+ALY    + 
Sbjct: 238 AYSLARLDLPGDIKSLNVSNAAAIALYAVHKYL 270


>gi|319404391|emb|CBI77994.1| tRNA/rRNA metyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 272

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/272 (51%), Positives = 183/272 (67%), Gaps = 11/272 (4%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKIF 69
           KDSHYA+LRR +RD K   SF Q + +  QP      E ++LYG+H V AAL NP R + 
Sbjct: 3   KDSHYARLRRRYRDTKG--SFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRILR 60

Query: 70  QLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            L  T NAL RLD  ++N+    P+    P+ ++  VG+EAVHQG+ LET PL S +L  
Sbjct: 61  HLYTTPNALKRLDINESNIA--CPITPCSPKKLEMFVGREAVHQGIVLETEPLKSRSLSE 118

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + N+ L++++D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I 
Sbjct: 119 LTNTDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIE 178

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           YI + NL  ALQ++H   F + GL S+ K PLE  +   KI+LILGAEGKGLR KT+E  
Sbjct: 179 YITVRNLFKALQELHQMNFISFGLDSEGKFPLETALTGTKISLILGAEGKGLRQKTRENV 238

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            S+A L +PG IK+LNVSNAAA+ALY    + 
Sbjct: 239 YSLARLDLPGDIKSLNVSNAAAIALYAVHKYL 270


>gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/269 (50%), Positives = 181/269 (67%), Gaps = 5/269 (1%)

Query: 16  KDSHYAKLRRNHRDYK---KMQSFNQKSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQL 71
           ++SHYA+LRR +RD K      S N K +  S  + +  LYG+H+V AAL NP R    L
Sbjct: 7   QNSHYARLRRRYRDTKASSSRSSKNMKKKTASLQQGIIHLYGIHSVQAALKNPKRIFKCL 66

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
             T+NAL RL+   +  +P PV    P+ +D +VG EAVHQG+ LET+PL    L  + N
Sbjct: 67  YVTQNALKRLNMSES-DYPCPVTLCTPKYLDSLVGSEAVHQGIVLETSPLKPCKLSELTN 125

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++V+D + DPHN+GAI+RSAVAF    +ITT R+SP ES VLAK+ASGALE I YI 
Sbjct: 126 TDLVIVMDQITDPHNVGAIMRSAVAFKAKALITTCRHSPHESGVLAKAASGALEMIHYIT 185

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + NL + LQ++H  GF + GL S+  +PLE  +   KIAL+LGAEGKGLR KT+ET  ++
Sbjct: 186 VRNLAETLQEIHQTGFTSFGLDSEGDQPLETTLTGSKIALVLGAEGKGLRKKTRETVCAL 245

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A L MPG IK+LNVSNAA +ALY+   + 
Sbjct: 246 ARLDMPGNIKSLNVSNAATIALYVAHKYL 274


>gi|13470525|ref|NP_102094.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
 gi|14021267|dbj|BAB47880.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
          Length = 235

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 131/224 (58%), Positives = 164/224 (73%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           LYG+HTV AAL+NP RKI ++L T+NA  RL+ +      F  + V P+ IDKI G +AV
Sbjct: 3   LYGLHTVRAALDNPRRKIRKMLVTRNAAERLEIEDLAALTFKAELVEPRDIDKITGSDAV 62

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG+ +E  PL    LDA+ +++L++VLD + DPHN+GAILRSAVAF    +ITT R+SP
Sbjct: 63  HQGVLIEAEPLKPKRLDALGDTRLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSP 122

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            ES VLAKSASGALEHI  I + NL DAL ++H  GFQTIGL SD    LE     D+IA
Sbjct: 123 QESGVLAKSASGALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRIA 182

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L+LGAEGKGLR KT+ET T++A L MPG I++LNVSNAAAV+LY
Sbjct: 183 LVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLY 226


>gi|240850284|ref|YP_002971677.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267407|gb|ACS50995.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 276

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/269 (50%), Positives = 181/269 (67%), Gaps = 5/269 (1%)

Query: 16  KDSHYAKLRRNHRDYKKM--QSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           ++SHYA+LRR +RD K    +SF   +K   + Q   + LYG+H+V AAL NP R +  L
Sbjct: 7   QNSHYARLRRRYRDTKGSPSRSFTHLKKKAASLQQGIIHLYGIHSVQAALENPKRILKCL 66

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
             T+NAL RL+   +  +P  V    P+ +D +VG EAVHQG+ LET PL    L  + N
Sbjct: 67  YVTQNALKRLNISES-DYPCSVTLCTPKYLDSLVGSEAVHQGIVLETLPLKPCKLSELTN 125

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++V+D + DPHN+GAI+RSAVA     +ITT R+SP ES VLAK+ASGALE I YI 
Sbjct: 126 TDLVIVMDQITDPHNVGAIMRSAVALKAKALITTCRHSPHESGVLAKAASGALEMIHYIT 185

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + NL +ALQ++H  GF + GL S+  KPLE  +  +KIAL+LGAEGKGLR KT+ET  ++
Sbjct: 186 VRNLAEALQELHQTGFSSFGLDSEGDKPLETALTGNKIALVLGAEGKGLRKKTRETVCAL 245

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             L MPG IK+LNVSNAA +ALY+   + 
Sbjct: 246 TRLDMPGNIKSLNVSNAATIALYVAHKYL 274


>gi|218661645|ref|ZP_03517575.1| tRNA/rRNA methyltransferase protein [Rhizobium etli IE4771]
          Length = 254

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/223 (58%), Positives = 166/223 (74%), Gaps = 3/223 (1%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKI 104
           P+    YG+HTV AAL+NP RK  +L  T+NALARL+ D   L   F +  V P  IDK+
Sbjct: 19  PDQGLSYGLHTVRAALDNPERKKIKLSVTQNALARLEIDVETLGIAFEI--VSPHEIDKV 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +G EA+HQG+ LET PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +IT
Sbjct: 77  LGPEAIHQGVMLETRPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVIT 136

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T+R+SP+ES VLAKSASGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE   
Sbjct: 137 TQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTF 196

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             DK+AL+LG+EGKGLR KT+ET T++A L MPG IK+LNVSN
Sbjct: 197 SGDKVALVLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 239


>gi|319899065|ref|YP_004159158.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
 gi|319403029|emb|CBI76584.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
          Length = 271

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/260 (51%), Positives = 176/260 (67%), Gaps = 4/260 (1%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           KDSHYA+LRR +RD K      Q S H   Q E ++LYG+H V AAL NP R +  L AT
Sbjct: 7   KDSHYARLRRQYRDTKGF--LFQSSTHPKLQKEKIYLYGIHPVRAALKNPRRILRHLYAT 64

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
            NAL RL+ + +     P+    P+ ++  VG EAVHQGL LET  L S +L  + N+ L
Sbjct: 65  PNALKRLNINES-SLSCPITLCLPKKLEAFVGNEAVHQGLVLETETLKSHSLSELTNTDL 123

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++V+D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I YI + N
Sbjct: 124 IIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYITVQN 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L+ AL++++   F + GL S+ + PLE  +  +KI+L+LGAE KGLR KT+ET   +A L
Sbjct: 184 LSQALKELNQMNFISFGLDSEGELPLEIALTGNKISLVLGAESKGLRQKTRETVYKLARL 243

Query: 255 HMPGIIKALNVSNAAAVALY 274
            MPG IK+LNVSNAA +ALY
Sbjct: 244 DMPGDIKSLNVSNAATIALY 263


>gi|121602409|ref|YP_988872.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614586|gb|ABM45187.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 276

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/269 (49%), Positives = 184/269 (68%), Gaps = 5/269 (1%)

Query: 16  KDSHYAKLRRNHRDYKK-MQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKIFQL 71
           ++S++A LRR +RD K  + S + + ++   P   E + LYG+H V+AAL NP+R +  L
Sbjct: 7   RNSYFASLRRQYRDTKGFISSPSARFKYGPSPLTAEKIRLYGIHAVNAALQNPNRVLECL 66

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
            AT NAL RL+   + P P  ++   P+ +D ++G +AVHQG+ LET PL S  L  + +
Sbjct: 67  YATPNALKRLNIVESNP-PCLLELCSPKKLDTLIGSDAVHQGVVLETKPLKSRHLSELTH 125

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++V+D + DPHN+GAI+RSAVAF    +ITT R+SP ES VLAK+ASGALE I YI 
Sbjct: 126 TDLVVVMDQITDPHNVGAIMRSAVAFKAGALITTHRHSPQESGVLAKAASGALEMIDYIT 185

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + NL +AL+++H   F + GL S+  KPLE  +   KIALILGAEGKGLR KT+ET  ++
Sbjct: 186 VRNLAEALKELHKADFISFGLDSEGGKPLEIALTGQKIALILGAEGKGLRKKTRETVCAL 245

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A L MPG IK+LNVSNAA +ALY T  + 
Sbjct: 246 ARLDMPGNIKSLNVSNAATIALYATHKYL 274


>gi|218516180|ref|ZP_03513020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli 8C-3]
          Length = 252

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 127/238 (53%), Positives = 166/238 (69%), Gaps = 14/238 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +  ++        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D   P   P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGK
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGK 252


>gi|319405864|emb|CBI79496.1| tRNA/rRNA metyltransferase [Bartonella sp. AR 15-3]
          Length = 276

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/259 (50%), Positives = 173/259 (66%), Gaps = 11/259 (4%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKIF 69
           +DS YA+LRR +RD K   SF Q S +  QP        ++LYG+H V AAL NP R + 
Sbjct: 7   QDSRYARLRRQYRDIKG--SFFQSSTYVKQPFIPLQKAQIYLYGIHPVHAALKNPRRILR 64

Query: 70  QLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            L AT NAL RL+  ++N+P    + +  P+ ++  VG EAVHQG+ LET PL S +L  
Sbjct: 65  HLYATPNALKRLNINESNIP--CSITSCSPKKLETFVGSEAVHQGIVLETEPLKSHSLSE 122

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + N+ L++V+D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I 
Sbjct: 123 LTNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIE 182

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           YI + NL+ AL+++    F + GL S+   PLE  +  +KI+LILGAEGKGLR KT+E  
Sbjct: 183 YITVHNLSKALKELQQMNFISFGLDSEGGFPLETALTGNKISLILGAEGKGLRQKTRENV 242

Query: 249 TSMAHLHMPGIIKALNVSN 267
            S+  L +PG IK+LNVSN
Sbjct: 243 YSLVRLDLPGDIKSLNVSN 261


>gi|49475390|ref|YP_033431.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238196|emb|CAF27406.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 274

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 130/274 (47%), Positives = 173/274 (63%), Gaps = 17/274 (6%)

Query: 16  KDSHYAKLRRNHRDYK------KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           K  HY +L+R   D K      +M+  +   RH +    ++LYG+H+V AAL NP R   
Sbjct: 7   KSFHYNRLQRRSHDKKGFLPAARMKQKSVPMRHGT----IYLYGLHSVHAALKNPKRVFE 62

Query: 70  QLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            L  T NAL RL    N+P    P P+    P+ +D  VG +AVHQG+ LET PL    L
Sbjct: 63  HLYITPNALKRL----NIPESDLPCPITLCLPKQLDSFVGNDAVHQGIVLETEPLKPCQL 118

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + N+ L++V+D + DPHN+GAI+RSAVAF  + +ITT R+SP ES VLAK+ASGALE 
Sbjct: 119 SELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAEALITTYRHSPQESGVLAKAASGALEM 178

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I YI + NL + LQ++H  GF + GL S+   PLE  +  +KIAL+LGAEGKGLR KT+E
Sbjct: 179 IHYITVQNLAETLQELHKAGFISFGLDSEGNHPLETTLTGEKIALVLGAEGKGLRKKTRE 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++  L MPG IK+LNVSNAA +ALY    + 
Sbjct: 239 NVCALTRLDMPGNIKSLNVSNAATIALYAAHKYL 272


>gi|319408375|emb|CBI82028.1| tRNA/rRNA metyltransferase [Bartonella schoenbuchensis R1]
          Length = 276

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 136/269 (50%), Positives = 181/269 (67%), Gaps = 5/269 (1%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQP---ENLFLYGVHTVSAALNNPSRKIFQL 71
           K+S++   RR +RD K     +    +H S P     ++LYG+H+V  AL NP R    L
Sbjct: 7   KNSYFPHPRRQYRDIKSATRVSSTHLKHRSAPLIQGTVYLYGIHSVKEALKNPKRVFNHL 66

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
            AT NAL RL+   +   P P+K  PP+ +D +VGK+AVHQG+ LET  L    L  + N
Sbjct: 67  YATPNALKRLNITES-DVPCPLKLYPPKKLDTLVGKDAVHQGVVLETEVLKPRHLSELTN 125

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++V+D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I YI 
Sbjct: 126 TNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTYRHSPQESGVLAKAASGALELIDYIT 185

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + NL +AL+++H  GF ++GL S+ + PLE  +   KIALILGAEGKGLR KT+ET  S+
Sbjct: 186 VRNLAEALKEIHQAGFNSLGLDSEGELPLETALTGKKIALILGAEGKGLRKKTRETVHSL 245

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A L++PG IK+LNVSNAAA+ALY   N+ 
Sbjct: 246 ARLNIPGDIKSLNVSNAAAIALYAAHNYL 274


>gi|49474315|ref|YP_032357.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239819|emb|CAF26210.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 272

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/273 (47%), Positives = 169/273 (61%), Gaps = 13/273 (4%)

Query: 16  KDSHYAKLRRNHRD-----YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           K+ HYA L+   RD     ++      QK+    Q   + LYG HTV+AAL NP R    
Sbjct: 3   KNFHYAHLQDRSRDKKSFPFRPAAHLKQKAVPLRQ-GTIRLYGFHTVNAALKNPKRVFGH 61

Query: 71  LLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           L  T NAL RL    N+P    P  V    P+ +D +VG +AVHQG+ LET  L    L 
Sbjct: 62  LYITLNALKRL----NIPKSDLPCSVTLYSPKQLDSLVGSDAVHQGIILETESLKPCQLS 117

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            + N+ L++V+D + DPHN+GAI+RSA+AF    +ITT R+SP ES VLAK+ASGALE I
Sbjct: 118 ELTNTDLVIVMDQITDPHNVGAIMRSAIAFKAGALITTCRHSPQESGVLAKAASGALEII 177

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            YI + NL + LQ++H  GF + GL S+    LE  +   KIAL+LGAEGKGLR KT+ET
Sbjct: 178 NYITVRNLAETLQELHKAGFISFGLDSEGDHSLETALTGRKIALVLGAEGKGLRKKTRET 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++  L MPG IK+LNVSNAA +ALY+   + 
Sbjct: 238 VCALTRLDMPGNIKSLNVSNAATIALYVAHKYL 270


>gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
           Nb-255]
 gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
           Nb-255]
          Length = 283

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 119/254 (46%), Positives = 165/254 (64%), Gaps = 1/254 (0%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R+++  +   +K+R TS      LYG HTV+AAL NP R+I +LL T+NA  RL  + N+
Sbjct: 28  RNHQPKRGSARKARETSPDGPAVLYGWHTVTAALANPRRRIRKLLVTENAARRLTHE-NI 86

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             P   + V P  ID+ +G +AVHQGL  E  PL SP ++ +    +++VLD + DPHN+
Sbjct: 87  DTPITPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPDIETLTQEGIVLVLDQITDPHNV 146

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RSA AFS   I+TT R+SP  + VLAKSASGALE +P + + NL  AL  ++  GF
Sbjct: 147 GAIMRSAAAFSVKAIVTTARHSPEATGVLAKSASGALEIVPLVLVQNLARALAGLNDRGF 206

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T+GL S   + L      + +AL+LGAEGKGLR  T++T +++A L MPG IK+LNVSN
Sbjct: 207 MTVGLDSAGSENLAAVPLREPLALVLGAEGKGLRQLTRDTCSAVARLDMPGHIKSLNVSN 266

Query: 268 AAAVALYITQNHFA 281
           AA +ALYI  +   
Sbjct: 267 AAVLALYIGASRLG 280


>gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB18]
 gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB18]
          Length = 275

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/269 (45%), Positives = 165/269 (61%), Gaps = 1/269 (0%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
           F  K     K  ++ R+ K+      + R +       LYG HTV AAL NP R I +LL
Sbjct: 4   FERKPRFGRKPDKSSRNPKEAGRQPWRDRESRPDGPAILYGWHTVVAALGNPQRTIRKLL 63

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
            ++NA  RL  D N+    P + V P  ID+ +G +AVHQGL  E  PL  P LD +   
Sbjct: 64  LSENAARRL-ADENIDTRVPPEIVRPSLIDQRLGPDAVHQGLLAEADPLEPPELDTLPQQ 122

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++VLD + DPHN+GAILRSA AF+   I+TT R+SP  + VLAKSASGALE +P + +
Sbjct: 123 GIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPMVTV 182

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  AL  ++  GFQT+GL S+    L     +  +AL+LGAEGKGLR  T++T +++A
Sbjct: 183 QNLARALTDLNDRGFQTVGLDSEGGDDLATIPLSAPLALVLGAEGKGLRQLTRQTCSALA 242

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            L MPG IK+LNVSNAAA+ALYI  +   
Sbjct: 243 RLDMPGEIKSLNVSNAAALALYIGASRLG 271


>gi|254470423|ref|ZP_05083827.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
           JE062]
 gi|211960734|gb|EEA95930.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
           JE062]
          Length = 289

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 115/276 (41%), Positives = 177/276 (64%), Gaps = 13/276 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQ--------SFNQ----KSRHTSQPENLFLYGVHTVSAAL 61
           S   S ++  + N R YKK +        SF++    + +  ++    ++YG+HT+ AA 
Sbjct: 9   STGGSRWSPTQGNDRPYKKKRPDGKSSGGSFSKGKPWQKKSAAEDGPFYIYGLHTIEAAF 68

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            NP RK  +L+ T+NAL RL+ + NL    PV+   P+ IDK+VGK+AVHQG AL    L
Sbjct: 69  KNPERKRHKLVVTQNALRRLE-ERNLKIDVPVEDASPRDIDKLVGKDAVHQGAALLVDAL 127

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                + +++ QL++ LD V DPHN+GAILRSAVA + D ++TT+R++P E  VLAK+AS
Sbjct: 128 PEYGPEELKDGQLVLALDQVTDPHNVGAILRSAVALNADAVVTTRRHAPEEGPVLAKTAS 187

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GAL+ I ++RI N++  +++M   G+Q I L S+  + +E     DK  L+LG+EGKG+R
Sbjct: 188 GALDMIKHVRIQNMSRFVEEMRDKGYQAIALDSEGPEAVENTAFTDKTLLVLGSEGKGVR 247

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +++  ++A L MPG IK+LNVSNAA ++LY+ +
Sbjct: 248 EGVRKSCDTLARLDMPGEIKSLNVSNAAILSLYVAR 283


>gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 259

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 114/251 (45%), Positives = 158/251 (62%), Gaps = 2/251 (0%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           R   RD +     ++++      + + LYG H V+ AL NP R + +LLAT+NALARL  
Sbjct: 5   RTAPRDRRHRSGADRRAAPAGD-DRIILYGWHPVTEALRNPGRGLHRLLATENALARLAA 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +       P + V P  I  +VG +AVHQGL LE  PL +P  D +    +L+ LD + D
Sbjct: 64  ELGELRIVP-QMVRPGEISALVGPDAVHQGLYLEAEPLRAPAFDTLPPDAVLLALDQITD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A AF+   I+TT R+SP+ + VLAKSASG LEH+P++ + NL +AL  + 
Sbjct: 123 PHNVGAIVRTAAAFNVTAIVTTARHSPAATGVLAKSASGGLEHVPFVTVRNLAEALIDLG 182

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             GF  IGL S++  PL+Q      + ++LGAEGKGLR +T+E    MA L  PG IK+L
Sbjct: 183 ERGFTRIGLDSEAPVPLDQVTPAPPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSL 242

Query: 264 NVSNAAAVALY 274
           NVSNAAA+ LY
Sbjct: 243 NVSNAAAITLY 253


>gi|148256472|ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
 gi|146408645|gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
          Length = 280

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 117/254 (46%), Positives = 159/254 (62%), Gaps = 3/254 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R +++ Q +  + + +  P  + LYG HTV+ AL NP R+I +L  T+NA  RL  D  +
Sbjct: 26  RKFERPQPWRDREQGSDGP--VILYGWHTVTLALGNPKRRIRKLYLTENAARRL-ADERI 82

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                 + V P  ID+ +G +AVHQGL  E  PL SP +D +    +++VLD + DPHN+
Sbjct: 83  ETRVTPEIVRPSQIDQRLGPDAVHQGLLAEADPLPSPDIDTLAAEGMILVLDQITDPHNV 142

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILRSA AF    I+TT R+SP  + VLAKSASGALE +P I + NL  AL ++   GF
Sbjct: 143 GAILRSAAAFDVKAIVTTARHSPEATGVLAKSASGALELVPIITVQNLARALTRLDERGF 202

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           QT+GL S     +      + +AL+LGAEGKGLR  T+ET + +A L MPG IK+LNVSN
Sbjct: 203 QTVGLDSAGPTDIAAVALREPLALVLGAEGKGLRQLTRETCSVVARLDMPGAIKSLNVSN 262

Query: 268 AAAVALYITQNHFA 281
           AA +ALYI  +   
Sbjct: 263 AAVLALYIGASRLG 276


>gi|92118023|ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
 gi|91800917|gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
          Length = 283

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 162/265 (61%), Gaps = 3/265 (1%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DSH  K     R   +  + N +      P    LYG HTV+AAL NP R+I +LL T+N
Sbjct: 19  DSHARKAGDRKRPPGRGSARNGRETGADGPA--ILYGWHTVTAALANPRRRIRKLLLTEN 76

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A  RL  + N+      + V P  ID+ +G +AVHQGL  E  PL SP +D +    +++
Sbjct: 77  AARRL-ANENIETRLTPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPDIDTLAQEGIVL 135

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+GAI+RSA AF+   I+TT R+SP  + VLAKSASGALE +P + + NL 
Sbjct: 136 VLDQITDPHNVGAIMRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLA 195

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            AL +++  GF T+GL S   + L        +AL+LGAEGKGLR  T+ET  ++A L M
Sbjct: 196 RALTELNDRGFMTVGLDSAGGEDLAAIQLRQPLALVLGAEGKGLRQLTRETCNAVARLDM 255

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
           PG IK+LNVSNAA +ALYI  +   
Sbjct: 256 PGDIKSLNVSNAAVLALYIGASRLG 280


>gi|170741100|ref|YP_001769755.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168195374|gb|ACA17321.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 268

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 150/228 (65%), Gaps = 1/228 (0%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + + LYG H V+ AL NP R++ +LLAT+N LARL  +       P +TV P  I  +VG
Sbjct: 36  DTVVLYGWHPVAEALRNPRRRLTRLLATENGLARLTEEVGELRIAP-ETVRPGEISALVG 94

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            +AVHQGL LE  PL  P ++ +    +L+ LD + DPHN+GAI+R+A AF+   I+TT 
Sbjct: 95  PDAVHQGLYLEAEPLPVPPIEDLPADAVLLALDQITDPHNVGAIVRTAAAFAVTAIVTTA 154

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R+SP+ + VLAKSASG LEH+P+I + NL +AL +    GF  IGL S++  PL +    
Sbjct: 155 RHSPAATGVLAKSASGGLEHVPFITVRNLAEALIRFGEQGFTRIGLDSEAPVPLSEVTPT 214

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + ++LGAEGKGLR +T+E    MA L  PG IK+LNVSNAAA+ LY
Sbjct: 215 RPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSLNVSNAAAITLY 262


>gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 308

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 160/243 (65%), Gaps = 1/243 (0%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + R ++    + LYG H+V+ AL NP+R+I +L  T+NA  RL  + N+      + V P
Sbjct: 63  RDRDSASDGPVILYGWHSVTMALQNPARRIRKLTLTENAARRLA-EENIETRVTPEIVRP 121

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           Q ID+++  +AVHQGL  E  PL SP ++ +    +++VLD + DPHN+GAILRSA AF+
Sbjct: 122 QEIDRLLSPDAVHQGLLAEADPLPSPDIETLTPEGMVLVLDQITDPHNVGAILRSAAAFA 181

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              I+TT R+SP  + VLAK+ASGALE +P + + NL  AL  ++  GFQT+GL S+  +
Sbjct: 182 VKAIVTTARHSPEATGVLAKAASGALELVPVVTVQNLARALTALNERGFQTVGLDSEGSE 241

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L      + +AL+LGAEGKGLR  T+ET + +A L MPG IK+LNVSNAAA++LY+  +
Sbjct: 242 DLSNVALREPLALVLGAEGKGLRQLTRETCSVVARLDMPGEIKSLNVSNAAALSLYVGAS 301

Query: 279 HFA 281
              
Sbjct: 302 RLG 304


>gi|158422502|ref|YP_001523794.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158329391|dbj|BAF86876.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 281

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 153/233 (65%), Gaps = 1/233 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG HTVS AL NP+R+  ++LAT+NA  RL  +   P P   + V P  IDK++G +A
Sbjct: 48  LLYGWHTVSEALANPARRFRKILATENAANRLQ-EEGFPLPVAPEIVRPSEIDKLLGSDA 106

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           VHQGL  E   L SP L  V  S L++VLD + DPHN+GAI+RSA AF+   I+TT R+S
Sbjct: 107 VHQGLLAEAEHLPSPPLKKVAKSDLVLVLDQITDPHNVGAIVRSAAAFAVGAIVTTARHS 166

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P  + VLAKSASG LEH+P+  ++NL  AL+++ + G   +GL S+    LE       +
Sbjct: 167 PVATGVLAKSASGGLEHVPFCLVTNLARALEELKASGMLVVGLDSEGPADLEDTAMRPPM 226

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           AL+LGAEGKGLR  T+ET   +A + +PG IK+LNVSNAAA++L I +    +
Sbjct: 227 ALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGIARRALKR 279


>gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris BisA53]
          Length = 276

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 117/238 (49%), Positives = 154/238 (64%), Gaps = 2/238 (0%)

Query: 45  QPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +PE    LYG HTV AAL NP R+I  L  T+NA  RL  D N+P     + V P  ID+
Sbjct: 35  RPEGPAILYGWHTVVAALANPQRRIRSLFLTENAARRLS-DENIPTRVQPEIVRPSAIDQ 93

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            +G +AVHQGL  E  PL SP +D++    +++VLD + DPHN+GAILRSA AF+   I+
Sbjct: 94  RLGPDAVHQGLLAEVDPLPSPDIDSLPQEGIVLVLDQITDPHNVGAILRSAAAFAVKAIV 153

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T R+SP  + VLAKSASGALE +P + + NL  AL +++  GF TIGL S+    L   
Sbjct: 154 ITARHSPEATGVLAKSASGALELVPLVSVGNLARALTELNDRGFLTIGLDSEGDDDLASI 213

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                +AL+LGAEGKGLR  T++T  ++A L +PG IK+LNVSNAAA+ALYI  +   
Sbjct: 214 ELTQPLALVLGAEGKGLRQLTRQTCGALARLDLPGDIKSLNVSNAAALALYIGASRLG 271


>gi|316933379|ref|YP_004108361.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris DX-1]
 gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris DX-1]
          Length = 275

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 117/265 (44%), Positives = 165/265 (62%), Gaps = 1/265 (0%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +S +++     R   +   F + +R       + LYG HTV+AAL NP RK  +L  T+N
Sbjct: 7   NSRFSRRDGPPRGKPRPAGFRRDARERDGDGPVILYGWHTVTAALANPRRKFRKLWLTEN 66

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A AR   D N+      + V P  ID+ +G +AVHQG+  E   L +P +D +    +++
Sbjct: 67  A-ARKLADENIDTRIAPEIVRPSEIDRRLGPDAVHQGMLAEADALETPRIDTLPEHGIVL 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+GAILRSA AF+   I+TT R+SP  + VLAKSASGALE +P + + NL+
Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLS 185

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            AL +++  GF T+GL S+ +  L        +AL+LGAEGKGLR  T++T T++A L M
Sbjct: 186 RALTELNERGFLTVGLDSEGEDDLAAVALRQPLALVLGAEGKGLRQLTRQTCTTVARLDM 245

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
           PG IK+LNVSNAAA+ALYI  +   
Sbjct: 246 PGEIKSLNVSNAAALALYIGASRLG 270


>gi|146340002|ref|YP_001205050.1| putative rRNA methylase 23S rRNA
           (guanosine-2'-O-)-methyltransferase rlmB-like
           [Bradyrhizobium sp. ORS278]
 gi|146192808|emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA
           (guanosine-2'-O-)-methyltransferase rlmB-like
           [Bradyrhizobium sp. ORS278]
          Length = 297

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 151/233 (64%), Gaps = 1/233 (0%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + LYG HTVS AL NP R+I +L  T+NA  RL  D ++      + V P  ID+ +G +
Sbjct: 62  VILYGWHTVSLALANPKRRIRKLYLTENAARRL-ADEHIETRVTPEIVRPSQIDQRLGPD 120

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           AVHQGL  E  PL SP +D +    +++VLD + DPHN+GAILRSA AF    I+TT R+
Sbjct: 121 AVHQGLLAEADPLPSPDIDTLAPEGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTARH 180

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           SP  + VLAKSASGALE +P I + NL  AL +++  GFQT+GL S     +        
Sbjct: 181 SPEATGVLAKSASGALELVPMITVQNLARALTRLNERGFQTVGLDSAGDTDIAAVTLRQP 240

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +AL+LGAEGKGLR  T+ET +++A L MPG IK+LNVSNAA +ALY+  +   
Sbjct: 241 LALVLGAEGKGLRQLTRETCSAVARLDMPGAIKSLNVSNAAVLALYVGASRLG 293


>gi|304391896|ref|ZP_07373838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
           R2A130]
 gi|303296125|gb|EFL90483.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
           R2A130]
          Length = 287

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 163/245 (66%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIV 105
           EN++LYGVHTV AAL NP RK+ QLLAT + + RLD +A   HP   ++      +D++V
Sbjct: 44  ENVWLYGVHTVDAALRNPKRKVRQLLATDSGMERLDHNALAQHPDLDIRIGKTADLDRMV 103

Query: 106 GKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             ++VHQGL L+  PLL      L    + Q+++VLD V DPHN+GAILRSAVA     +
Sbjct: 104 TADSVHQGLLLDCEPLLREEPKDLYDFADDQIILVLDQVTDPHNVGAILRSAVAMGVKTV 163

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE- 221
           + T R+  SE+ VLAKSASGA++ +  + I NL+ +L ++    F  IGL  DS+ PLE 
Sbjct: 164 LVTSRHQSSETGVLAKSASGAVDMVDMLAIRNLSKSLDELREHRFAVIGL--DSEGPLEV 221

Query: 222 QEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           QE  +D    K+AL+LGAEGKGLR +T+E  T++A L MPG IK+LNVSNAAA++LY+ +
Sbjct: 222 QETLDDLKPSKVALVLGAEGKGLREQTREACTALARLDMPGPIKSLNVSNAAALSLYLVR 281

Query: 278 NHFAK 282
               K
Sbjct: 282 AAIKK 286


>gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB5]
 gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB5]
          Length = 273

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 154/232 (66%), Gaps = 1/232 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG HTV+AAL NP R+I +L  T+NA AR   D N+      + V P  ID+ +G +A
Sbjct: 40  ILYGWHTVTAALANPERRIRKLWLTENA-ARKLADENIDTKVTPEIVRPGEIDQRLGPDA 98

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           VHQG+  E  PL SP +D +    +++VLD + DPHN+GAILRSA AF+   I+TT R+S
Sbjct: 99  VHQGMLAEADPLDSPRIDTLPQDGIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHS 158

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P  + VLAKSASGALE +P + + NL+ AL +++  GF T+GL S+    L     ++ +
Sbjct: 159 PEATGVLAKSASGALELVPLVLVGNLSRALAELNDRGFLTVGLDSEGSADLAAVELHEPL 218

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           AL+LGAEGKGLR  T+ET   +A L MPG IK+LNVSNAAA+ALYI  +   
Sbjct: 219 ALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALYIGASRLG 270


>gi|86749323|ref|YP_485819.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           HaA2]
 gi|86572351|gb|ABD06908.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           HaA2]
          Length = 273

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 114/232 (49%), Positives = 152/232 (65%), Gaps = 1/232 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG HTV+AAL NP+R+I +LL T+NA AR   D N+        V P  ID+ +G +A
Sbjct: 40  ILYGWHTVTAALANPARRIRKLLLTENA-ARKLADENINTRITPDIVRPGEIDQRLGPDA 98

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           VHQG+  E  PL SP +D +    +++VLD + DPHN+GAI+RSA AF+   I+TT R+S
Sbjct: 99  VHQGMLAEVDPLESPRIDTLPEDGIVLVLDQITDPHNVGAIMRSAAAFAVKAIVTTARHS 158

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P  + VLAKSASGALE +P + ++NL  AL ++   G+ T+GL S+    L        +
Sbjct: 159 PEATGVLAKSASGALELVPLVLVTNLARALTELEDRGYLTVGLDSEGSADLAAVELRQPL 218

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           AL+LGAEGKGLR  T+ET   +A L MPG IK+LNVSNAAA+ALYI  +   
Sbjct: 219 ALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALYIGASRLG 270


>gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris
           CGA009]
 gi|192292212|ref|YP_001992817.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris TIE-1]
 gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009]
 gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris TIE-1]
          Length = 275

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 115/254 (45%), Positives = 156/254 (61%), Gaps = 1/254 (0%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R   +   F +  R       + LYG HTV+AAL NP RK  +L  T+NA  RL  + N+
Sbjct: 18  RGKPRPAGFRRDPRERDGDGPVILYGWHTVTAALANPQRKFRKLWLTENAARRL-AEENI 76

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                 + V P  ID+ +G +AVHQG+  E  PL  P +D +    +++VLD + DPHN+
Sbjct: 77  DTRIAPEIVRPSEIDRQLGPDAVHQGMLAEADPLQGPRIDTLPQHGIVLVLDQITDPHNV 136

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILRSA AF+   I+TT R+SP  + VLAKSASGALE +P + + NL  AL +++  GF
Sbjct: 137 GAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLARALTELNDRGF 196

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T+GL S+    L        +AL+LGAEGKGLR  T++T  ++A L MPG IK+LNVSN
Sbjct: 197 LTVGLDSEGDDDLAAVELRQPLALVLGAEGKGLRQLTRQTCNTVARLDMPGEIKSLNVSN 256

Query: 268 AAAVALYITQNHFA 281
           AAA+ALYI  +   
Sbjct: 257 AAALALYIGASRLG 270


>gi|118591205|ref|ZP_01548604.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614]
 gi|118436281|gb|EAV42923.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614]
          Length = 271

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/251 (44%), Positives = 160/251 (63%), Gaps = 2/251 (0%)

Query: 28  RDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           R  KK        R    PE  + LYG+HTV AA  N  RK  +L AT NAL RL+ +  
Sbjct: 17  RGNKKFGGKPAPRRPGLPPEGPVLLYGLHTVEAAFANKDRKRLKLFATDNALRRLE-ERG 75

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           +    PV+++ P+ +D++V K+AVHQG+ LE  PL +   + ++ ++L++ LD V DPHN
Sbjct: 76  VKIDVPVESMMPRALDRMVTKDAVHQGMILEADPLPAYGAEHLKGARLVLALDQVTDPHN 135

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAILRSAVA   D ++TT+R++P E +VLAKSASGAL+ I ++R+ N+   + +M   G
Sbjct: 136 VGAILRSAVALDADAVVTTERHAPEEGSVLAKSASGALDMIKHVRVKNMARFIAEMKDEG 195

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F  I L SD    LE+   +DK  L+LG+EGKG+R   +E     A L MPG I++LNVS
Sbjct: 196 FSCIALDSDGPASLEETPFSDKTVLVLGSEGKGVRQGVREACGLTARLDMPGEIRSLNVS 255

Query: 267 NAAAVALYITQ 277
           NAA ++LY+ +
Sbjct: 256 NAAVLSLYVAR 266


>gi|85716737|ref|ZP_01047705.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
 gi|85696455|gb|EAQ34345.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/232 (48%), Positives = 151/232 (65%), Gaps = 1/232 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG HTV+AAL NP R I +LL T+NA  RL  + N+      + V P TID+ +G +A
Sbjct: 1   MLYGWHTVTAALANPRRHIRKLLLTENAALRLKHE-NINTRITPEIVRPSTIDQRLGPDA 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           VHQGL  E  PL SP +  +    +++VLD + DPHN+GAI+RSA AFS   I+TT R+S
Sbjct: 60  VHQGLLAEADPLPSPDIGTLTQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTARHS 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P  + VLAKSASGALE +P +++ NL  AL  ++  G+ T+GL S   + L        +
Sbjct: 120 PEATGVLAKSASGALEVVPLVQVQNLARALTGLNDRGYMTVGLDSTGGENLAAVQLRQPL 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           AL+LGAEGKGLR  T++T + +A L MPG IK+LNVSNAA +ALYI  +   
Sbjct: 180 ALVLGAEGKGLRQLTRDTCSLVARLDMPGHIKSLNVSNAAVLALYIGASRLG 231


>gi|307946264|ref|ZP_07661599.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp.
           TrichSKD4]
 gi|307769928|gb|EFO29154.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp.
           TrichSKD4]
          Length = 277

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/261 (41%), Positives = 163/261 (62%), Gaps = 5/261 (1%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQ---PEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           R  RD K+   + +K         PE  + LYG+HTV AA  N  RK  +L AT+NA  R
Sbjct: 17  RPSRDNKRAGKWTKKPAPRCPGLPPEGPILLYGLHTVEAAFANTERKRMKLYATENAQRR 76

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L  + ++    P++T+ P+ +DK+V ++AVHQG+ LE  PL +   + ++ ++L++ LD 
Sbjct: 77  L-AERDVVVDVPIETLAPRALDKMVTRDAVHQGVILEADPLPAYGPEHLKGARLVLALDQ 135

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DPHN+GAILRSAVA   D ++TT+R++P E  VLAKSASGAL+ I ++R+ N+   + 
Sbjct: 136 VTDPHNVGAILRSAVALDADAVVTTERHAPEEGPVLAKSASGALDMIKHVRVKNMARFVS 195

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +M    F  + L SD    LE+     K  L+LG+EGKG+R   +E  +++A L MPG I
Sbjct: 196 EMQEQAFTAVALDSDGPASLEETELAPKTVLVLGSEGKGVRQGVREACSTLARLDMPGEI 255

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LNVSNAA +ALY+ +    
Sbjct: 256 RSLNVSNAAVLALYVARQKMG 276


>gi|154247282|ref|YP_001418240.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154161367|gb|ABS68583.1| RNA methyltransferase, TrmH family, group 3 [Xanthobacter
           autotrophicus Py2]
          Length = 288

 Score =  208 bits (529), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 108/228 (47%), Positives = 150/228 (65%), Gaps = 1/228 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG HTV+ A+ NP R+  +L AT+NA+ RL  +   P P   + V P  IDK++G +A
Sbjct: 56  LLYGWHTVAEAIGNPKRRFRRLRATENAIHRLAEEGLTP-PIAPEIVRPGDIDKLLGADA 114

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           VHQGL  E   L SP L  +  + L++VLD + DPHN+GAI+RSA AF+   I+TT R+S
Sbjct: 115 VHQGLLAEVDHLPSPRLKDIAKTDLVLVLDQITDPHNVGAIVRSAAAFAVSAIVTTARHS 174

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P+ + VLAKSASG LEH+P+  ++NL  AL ++   G   +GL S+    LE       +
Sbjct: 175 PAATGVLAKSASGGLEHVPFCLVTNLARALTELKENGMLVVGLDSEGPADLEDTPMRAPL 234

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           AL+LGAEGKGLR  T+ET   +A + +PG IK+LNVSNAAA++L + +
Sbjct: 235 ALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGMAR 282


>gi|254504591|ref|ZP_05116742.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
           DFL-11]
 gi|222440662|gb|EEE47341.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
           DFL-11]
          Length = 275

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/233 (44%), Positives = 149/233 (63%), Gaps = 1/233 (0%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + LYG+HTV AA  N  RK  +L AT+NA  RL  +  +    PV+   P+ +D++V K+
Sbjct: 43  VLLYGLHTVEAAFANKDRKRLKLYATENAKNRL-QERGVVIDVPVEDKRPKELDRMVTKD 101

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           AVHQG+ LE  PL +   + ++ ++L++ LD V DPHN+GAILRSAVA   D ++TT+R+
Sbjct: 102 AVHQGMILEADPLPAYGAEHLKGARLILALDQVTDPHNVGAILRSAVALDADAVVTTERH 161

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +P E  VLAKSASGAL+ I ++R+ N+   + +M   GF  I L SD    LE     DK
Sbjct: 162 APEEGPVLAKSASGALDMIKHVRVKNMARFITEMKEQGFGCIALDSDGHASLEDTDFTDK 221

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             L+LG+EGKG+R   +E    +A L MPG I++LNVSNAA ++LY+ +    
Sbjct: 222 TVLVLGSEGKGVRQGVREACGLLARLDMPGEIRSLNVSNAAVLSLYVARQKMG 274


>gi|209884778|ref|YP_002288635.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha
           carboxidovorans OM5]
 gi|209872974|gb|ACI92770.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha
           carboxidovorans OM5]
          Length = 274

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/269 (46%), Positives = 161/269 (59%), Gaps = 21/269 (7%)

Query: 31  KKMQSFNQKSRHTSQPEN----------------LFLYGVHTVSAALNNPSRKIFQLLAT 74
           ++  SF  KS H   P                  + LYG HTV+AAL NP RKI +L AT
Sbjct: 4   REYSSFKGKSSHRKPPHGRGGRPAWRDRDDHNAPVILYGWHTVTAALLNPKRKIRKLFAT 63

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ- 133
           +NAL RL  +     P P + V P  ID+ +G +AVHQGL  E  PL  P LD  +  Q 
Sbjct: 64  ENALRRLTEENITLRPAP-EIVRPSVIDQRLGPDAVHQGLLAEADPL--PALDIAKLPQD 120

Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++VLD + DPHN+GAILRSA AF+   ++TT R+SP  + VLAKSASGALE +P + +
Sbjct: 121 GIVLVLDQITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPLVTV 180

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  AL +M   GF T+GL S+    L +      +AL+LGAEGKGLR  T+ET  ++A
Sbjct: 181 QNLARALNEMKEHGFLTVGLDSEGSADLAETELRAPLALVLGAEGKGLRQLTRETCGTVA 240

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            L MPG IK+LNVSNA A+ALYI      
Sbjct: 241 RLDMPGEIKSLNVSNATALALYIGATRLG 269


>gi|328543340|ref|YP_004303449.1| RNA methyltransferase, TrmH family, group 3 [polymorphum gilvum
           SL003B-26A1]
 gi|326413085|gb|ADZ70148.1| RNA methyltransferase, TrmH family, group 3 [Polymorphum gilvum
           SL003B-26A1]
          Length = 265

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 107/237 (45%), Positives = 157/237 (66%), Gaps = 2/237 (0%)

Query: 46  PEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           PE  + LYG+HTV AA  NP R+  +L AT+NAL RL+     P   PV+ + P+ +D++
Sbjct: 29  PEGPILLYGLHTVEAAFQNPDRRRHKLFATENALRRLEERGIRPD-VPVEILAPRALDRM 87

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           V ++AVHQG+ LE   L +  +D ++ ++L++ LD V DPHN+GAILRSAVA + D ++T
Sbjct: 88  VTRDAVHQGVVLEADALPAYGVDELKGARLVLALDQVTDPHNVGAILRSAVALAADAVVT 147

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T+R++P E  VLAK+ASGAL+ I ++R+ N+   L +M   GF  + L SD +  LEQ  
Sbjct: 148 TERHAPEEGPVLAKAASGALDMIRHVRVKNMARFLVEMGEQGFFRVALDSDGEASLEQTP 207

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             DK  L+LG+EGKG+R   +     +A L MPG I++LNVSNAA +ALY+ +   +
Sbjct: 208 FGDKTVLVLGSEGKGVRQGVRAACDRLARLDMPGRIRSLNVSNAAVLALYVARQRMS 264


>gi|121281880|gb|ABM53513.1| putative RNA methyltransferase TrmH [uncultured bacterium CBNPD1
           BAC clone 67]
          Length = 319

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 110/258 (42%), Positives = 155/258 (60%), Gaps = 12/258 (4%)

Query: 35  SFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +F  KSR   +P         +   LYG+H+V  A  NP R+  +++AT+NA+ RL  D 
Sbjct: 30  AFKDKSRFAPKPKAPKPRLPDDTDVLYGMHSVKEAFANPRRRFRRIVATENAVQRLTEDG 89

Query: 86  -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            NLP     + V P+ I +++  +AVHQGL +E   L    L  +   ++++ LD V DP
Sbjct: 90  VNLP--LAPELVKPEAIGRLLTPDAVHQGLYVEAERLPLLPLGKLPRDRIILALDQVTDP 147

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAILRSA AF   G+I T R+SP  + VLAK+ASGALEH+P   + NL  AL  +  
Sbjct: 148 HNVGAILRSAAAFDVGGVIVTHRHSPEITGVLAKAASGALEHVPMAGVQNLARALTTLKD 207

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            GF  IGL S++ + +        I L+LGAEG+GLRP T+E  + +A L +PG IK+LN
Sbjct: 208 EGFAVIGLDSEAPEKMGDLPLKLPIVLVLGAEGRGLRPSTRELCSHLARLELPGAIKSLN 267

Query: 265 VSNAAAVALYITQNHFAK 282
           VSNAAA++LY  Q    +
Sbjct: 268 VSNAAAISLYAVQQAITR 285


>gi|299135282|ref|ZP_07028473.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
 gi|298590259|gb|EFI50463.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
          Length = 272

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 114/233 (48%), Positives = 151/233 (64%), Gaps = 2/233 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKE 108
            LYG HTV+ AL NP RKI +L  T+NAL RL D + +L    P + V P  ID+ +G +
Sbjct: 38  ILYGWHTVTLALANPKRKIRKLFVTENALRRLQDENIDLKKLTP-EVVRPSVIDQRLGPD 96

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           AVHQGL  E  PL +  +  +    +++VLD + DPHN+GAILRSA AF+   ++TT R+
Sbjct: 97  AVHQGLLAEADPLPALDISELPQDGIVLVLDQITDPHNVGAILRSAAAFAVKAVVTTARH 156

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           SP  + VLAKSASGALE +P + + NL  AL +M   GF T+GL S+    L +      
Sbjct: 157 SPEATGVLAKSASGALELVPVVIVQNLARALTEMKEHGFLTVGLDSEGSTNLAETELRAP 216

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +AL+LGAEGKGLR  T+ET  ++A L MPG IK+LNVSNA A+ALYI  +   
Sbjct: 217 LALVLGAEGKGLRQLTRETCGTVARLDMPGEIKSLNVSNATALALYIGASRLG 269


>gi|298291417|ref|YP_003693356.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM
           506]
 gi|296927928|gb|ADH88737.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM
           506]
          Length = 270

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 8/250 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           RR  R Y   Q    + R   +P      +   LYG H+V+ AL NP RKI +LLAT+NA
Sbjct: 6   RRPARPYHASQR-QPRPRPAGRPFGAWPDDVAILYGWHSVAEALRNPRRKIRRLLATENA 64

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
             RL+ + ++P     + V P  ID+++  +AVHQGL  E  PL + +L     S LL+V
Sbjct: 65  AKRLE-EESIPLKVKPEIVRPGEIDRLLDPDAVHQGLLAECDPLPALSLAKAAESDLLLV 123

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DPHN+GAI+RSA A     I+TT R+SP+ + VLAKSASG LEH+P+  + NL  
Sbjct: 124 LDQITDPHNVGAIVRSAAAMKVGAIVTTARHSPAATGVLAKSASGGLEHVPFCFVGNLAR 183

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L+++   G Q +GL S+    L        +AL+LGAEGKGLR  T++T  ++A + +P
Sbjct: 184 TLEELKERGVQVVGLDSEGPADLADTAMRAPVALVLGAEGKGLRQLTRQTCDTLARIDLP 243

Query: 258 GIIKALNVSN 267
           G I +LNVSN
Sbjct: 244 GAIVSLNVSN 253


>gi|188579486|ref|YP_001922931.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           populi BJ001]
 gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           populi BJ001]
          Length = 269

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 147/228 (64%), Gaps = 1/228 (0%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +++ LYG H VS AL N  R   +LLAT+NALARL  +A +  P   + V P  IDK++G
Sbjct: 33  DHVVLYGWHPVSQALANAGRHFHRLLATENALARLK-EAGIELPIEPELVRPSAIDKLLG 91

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            +AVHQGL  E  PL +P LDA+ +  LL+ LD + DPHN+GAI+R+A AF    I+TT 
Sbjct: 92  PDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAIVTTA 151

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R+SP+ + VLAKSASG LEH+P + + NL +AL  +   GF  IGL SD+   L+     
Sbjct: 152 RHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTSLDAVGPR 211

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               L+LGAEGKGLR +T E    +  +   G I++LNVSNAAA+ LY
Sbjct: 212 RPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLY 259


>gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1]
 gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           extorquens PA1]
          Length = 268

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/256 (44%), Positives = 156/256 (60%), Gaps = 11/256 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           RD +  + +  + R  +QP         +++ LYG H VS AL N  R   +LLAT+NAL
Sbjct: 5   RD-RPAKPYGFRPRPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENAL 63

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           ARL  +A +  P   + V P  ID+++G +AVHQGL  E  PL +P  DA+ +  LL+ L
Sbjct: 64  ARLK-EAGIELPIEPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPAFDAMPDDALLLAL 122

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+GAI+R+A AF    I+TT R+SP+ + VLAKSASG LEH+P + + NL +A
Sbjct: 123 DQITDPHNVGAIVRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEA 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   GF  IGL SD+   L+         L+LGAEGKGLR +T E    +  +   G
Sbjct: 183 LITLGERGFTRIGLDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATG 242

Query: 259 IIKALNVSNAAAVALY 274
            I++LNVSNAAA+ LY
Sbjct: 243 AIRSLNVSNAAAITLY 258


>gi|218528187|ref|YP_002419003.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           chloromethanicum CM4]
 gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           chloromethanicum CM4]
          Length = 268

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/256 (44%), Positives = 157/256 (61%), Gaps = 11/256 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           RD +  + +  + R  +QP         +++ LYG H VS AL N  R   +LLAT+NAL
Sbjct: 5   RD-RPAKPYGFRPRPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENAL 63

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           ARL  +A +  P   + V P  ID+++G +AVHQGL  E  PL +P LDA+ +  LL+ L
Sbjct: 64  ARLK-EAGIELPIEPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLAL 122

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+GAI+R+A AF    I+TT R+SP+ + VLAKSASG LEH+P + + NL +A
Sbjct: 123 DQITDPHNVGAIVRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEA 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   GF  IGL SD+   L+         L+LGAEGKGLR +T E    +  +   G
Sbjct: 183 LITLGERGFTRIGLDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATG 242

Query: 259 IIKALNVSNAAAVALY 274
            I++LNVSNAAA+ LY
Sbjct: 243 AIRSLNVSNAAAITLY 258


>gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1]
 gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4]
 gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1]
 gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4]
          Length = 268

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/256 (44%), Positives = 157/256 (61%), Gaps = 11/256 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           RD +  + +  + R  +QP         +++ LYG H VS AL N  R   +LLAT+NAL
Sbjct: 5   RD-RPAKPYGFRPRPRTQPPGPAAREGRDHVVLYGWHPVSQALANAGRHFHRLLATENAL 63

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           ARL  +A +  P   + V P  ID+++G +AVHQGL  E  PL +P LDA+ +  LL+ L
Sbjct: 64  ARLK-EAGIELPIEPEMVRPSAIDRLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLAL 122

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+GAI+R+A AF    I+TT R+SP+ + VLAKSASG LEH+P + + NL +A
Sbjct: 123 DQITDPHNVGAIVRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEA 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   GF  IGL SD+   L+         L+LGAEGKGLR +T E    +  +   G
Sbjct: 183 LITLGERGFTRIGLDSDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATG 242

Query: 259 IIKALNVSNAAAVALY 274
            I++LNVSNAAA+ LY
Sbjct: 243 AIRSLNVSNAAAITLY 258


>gi|23014094|ref|ZP_00053931.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 267

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/233 (45%), Positives = 153/233 (65%), Gaps = 13/233 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGK 107
           ++LYG+H VSAAL NP R+I +L+AT  A        +LP    PV+T+    ID+++  
Sbjct: 35  IWLYGIHAVSAALANPERRIRRLVATTEAAK------SLPATKIPVETMERAEIDRLLAP 88

Query: 108 EAVHQGLALETAPLLSPTL-DAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +VHQG+AL   PL + T+ D +R     +S L++VLD V DPHN+GAILRSA AF    
Sbjct: 89  GSVHQGIALLVEPLPAITMEDIIRMADSASSALVLVLDQVTDPHNVGAILRSAAAFGALA 148

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++   R++P E+  LAKSASGALE +P +R++N+  AL+ M   GF T GL++D+ K L 
Sbjct: 149 VVAPDRHAPDETGTLAKSASGALERMPLVRVTNVVRALEDMKKGGFWTAGLAADAPKTLA 208

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   + K+ L+LGAEG+G+R  T+E    +  L M G +++LNVSNAAAVALY
Sbjct: 209 EAELSGKVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALY 261


>gi|326402255|ref|YP_004282336.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
 gi|325049116|dbj|BAJ79454.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
          Length = 276

 Score =  195 bits (495), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 109/258 (42%), Positives = 161/258 (62%), Gaps = 7/258 (2%)

Query: 22  KLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           KL R    +++ Q    + R   S    L+LYG+H+V AAL NP+R++ +L+ T+   A 
Sbjct: 17  KLPRGPHPHRRSQGDAPRDRRPASSAGGLWLYGLHSVEAALANPARRLRRLVVTEEGEAA 76

Query: 81  LDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMV 137
           L     LPHP+P++   +    +D+++G+  VHQG+AL+  PL+ P+L DA++    ++V
Sbjct: 77  LA--GRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPSLNDALKRPGPVLV 134

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+GAILRSA AF    +I  +R +P E   LAK+ASGALE IP +R  N+  
Sbjct: 135 LDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGALERIPLLRTVNIAR 194

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           AL  + + G   +GL +     L ++ I N + AL+LGAEG+GLR  T+ET   +  L M
Sbjct: 195 ALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRLTRETCDELVSLPM 254

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNVS AAAVALY
Sbjct: 255 PGGMESLNVSAAAAVALY 272


>gi|148259103|ref|YP_001233230.1| RNA methyltransferase [Acidiphilium cryptum JF-5]
 gi|146400784|gb|ABQ29311.1| RNA methyltransferase, TrmH family, group 3 [Acidiphilium cryptum
           JF-5]
          Length = 276

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/258 (42%), Positives = 161/258 (62%), Gaps = 7/258 (2%)

Query: 22  KLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           KL R    +++ Q    + R   S    L+LYG+H+V AAL NP+R++ +L+ T+   A 
Sbjct: 17  KLPRGPHPHRRPQGDAPRDRRPASSAGGLWLYGLHSVEAALANPARRLRRLVVTEEGEAA 76

Query: 81  LDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMV 137
           L     LPHP+P++   +    +D+++G+  VHQG+AL+  PL+ P+L DA++    ++V
Sbjct: 77  LA--GRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPSLNDALKRPGPVLV 134

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+GAILRSA AF    +I  +R +P E   LAK+ASGALE IP +R  N+  
Sbjct: 135 LDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGALERIPLLRTVNIAR 194

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           AL  + + G   +GL +     L ++ I N + AL+LGAEG+GLR  T+ET   +  L M
Sbjct: 195 ALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRLTRETCDELVSLPM 254

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNVS AAAVALY
Sbjct: 255 PGGMESLNVSAAAAVALY 272


>gi|218670695|ref|ZP_03520366.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli GR56]
          Length = 209

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 135/195 (69%), Gaps = 15/195 (7%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQ-------PENLFLYGVHTVSAAL 61
           S KD+HYA LRR HRD K+ +        QK +           P+ ++LYG+HTV AAL
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRAEDWKPPALAPDQVYLYGLHTVRAAL 75

Query: 62  NNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +NP RK  +L  T+NALARL+ D   L   F +  V P  IDK++G EA+HQG+ LET P
Sbjct: 76  DNPERKKIKLSVTQNALARLEIDVETLGIAFEI--VSPHEIDKVLGPEAIHQGVMLETRP 133

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 134 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 193

Query: 181 SGALEHIPYIRISNL 195
           SGALE IPYI+I+NL
Sbjct: 194 SGALELIPYIQITNL 208


>gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
           trichosporium OB3b]
 gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
           trichosporium OB3b]
          Length = 270

 Score =  188 bits (478), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 141/226 (62%), Gaps = 2/226 (0%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + LYG H V  AL    RK+  L AT+ A  R+   A      P + V P+ +   +G E
Sbjct: 34  VVLYGAHAVREALRARRRKLLTLYATEGAAERIAPLAAEAGLTP-QIVDPRALTSRLGDE 92

Query: 109 AVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +VHQGL LE  PL +  + D    S +++VLD V DPHN+GAILR+A AF+ D ++ T R
Sbjct: 93  SVHQGLLLEARPLPAAEIADIETKSGVVLVLDQVTDPHNVGAILRTAAAFAVDALVMTDR 152

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            SP  + VLAK+ASGALEH+  + + NL  ALQ++   G   +GL S++  PLE+    +
Sbjct: 153 NSPELTGVLAKAASGALEHVLIVSVVNLARALQELSQSGRLVVGLDSEAPAPLEETRLQN 212

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            IAL+LGAEGKGLR  T+E    +A L MPG IK+LNVSNA AVAL
Sbjct: 213 PIALVLGAEGKGLRRLTRERCDVLARLDMPGPIKSLNVSNACAVAL 258


>gi|170747977|ref|YP_001754237.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
 gi|170654499|gb|ACB23554.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 281

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/225 (45%), Positives = 144/225 (64%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG H V  AL N  R + +LLAT+NA ARL+ +         + V P  I +++G +A
Sbjct: 50  VLYGWHPVVQALGNAQRGLHRLLATENAAARLEAEFGGAVRITPELVRPSDIGRLLGPDA 109

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           VHQGL LE  PL +P LD +    LL+ LD + DPHN+GAI+R+A AF   GI+TT R++
Sbjct: 110 VHQGLYLEAEPLPAPGLDDLPADALLLALDQITDPHNVGAIVRTAAAFGVAGIVTTARHA 169

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P  + VLAKSASG LEH+P++ + NL +AL ++   GF  +GL SD+ + L+       +
Sbjct: 170 PGATGVLAKSASGGLEHVPFVTVRNLAEALIELGERGFTRVGLDSDAPESLDALTVARPL 229

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++LGAEGKGLR +T+     +A +   G I++LNVSNAAA+ LY
Sbjct: 230 VIVLGAEGKGLRERTRGCCDVLARIPFSGAIRSLNVSNAAAITLY 274


>gi|83312248|ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82947089|dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 267

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 147/232 (63%), Gaps = 11/232 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++LYG+H V AAL NP R+  +L+AT  A   L          PV+T+    ID+++   
Sbjct: 35  IWLYGIHAVCAALANPDRRARRLVATVEAAKSLPATK-----VPVETMERSEIDRLLAPG 89

Query: 109 AVHQGLALETAPLLSPTL-DAVR-----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +VHQG+AL   PL + T+ D +R      S L++VLD V DPHN+GAILRSA AF    +
Sbjct: 90  SVHQGVALLVEPLPATTIEDVIRMADGAPSALVLVLDQVTDPHNVGAILRSAAAFGALAV 149

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +   R++P E+  LAKSASGALE +P +R++N+   L+ +   GF T GL++D+ K L +
Sbjct: 150 VAPDRHTPDETGTLAKSASGALERMPLVRVTNVVRTLEDLKKAGFWTAGLAADAPKTLAE 209

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + K+ L+LGAEG+G+R  T+E    +  L M G +++LNVSNAAAVALY
Sbjct: 210 ANLSGKVVLVLGAEGEGMRRLTREHCDHLVRLPMCGEMESLNVSNAAAVALY 261


>gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
           49242]
 gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
           49242]
          Length = 278

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/238 (44%), Positives = 146/238 (61%), Gaps = 8/238 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDK 103
           PE + +YG H V  AL    RK+  L AT+ AL R+   A+L     V  + V  + + +
Sbjct: 38  PEVVTIYGAHAVREALKARRRKLLALYATETALPRI---ADLARGAGVEPRLVDGRDLSR 94

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +G EAVHQGL LE  PL    +  +   S +++ LD + DPHN+GAILR+A AF  D +
Sbjct: 95  HLGDEAVHQGLLLEARPLPEAGVGDIEPKSGIVLALDQITDPHNVGAILRTACAFGVDAL 154

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I T+R+SP  + VLAK+ASGALEH+  + + NL  AL ++   G+  +GL S+  +PLE 
Sbjct: 155 IITERHSPEFTGVLAKAASGALEHVTIVSVVNLARALDELRGAGYGVVGLDSEGAEPLET 214

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +AL+LGAEGKGLR  T+E   ++A L +PG IK+LNVSNA A AL +   HF
Sbjct: 215 IALPKPLALVLGAEGKGLRRLTRERCDAIARLDLPGPIKSLNVSNACAAALSVA--HF 270


>gi|163732185|ref|ZP_02139631.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
           Och 149]
 gi|161394483|gb|EDQ18806.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
           Och 149]
          Length = 257

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/246 (42%), Positives = 149/246 (60%), Gaps = 7/246 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ + T   E ++L+G+H V  AL N +R+  QL+ T NA A+L  DA        + V 
Sbjct: 11  EQDKKTENRETIWLFGLHAVRDALENAAREKLQLIVTLNAQAKLA-DAIETSGIAPEVVD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ--LLMVLDHVNDPHNIGAILRSA 154
           P+  +  +   +VHQG ALE  PL   +L D    S+   +M+LD V DPHN+GAILRSA
Sbjct: 70  PRKFNAPLDPGSVHQGAALEVKPLNWGSLEDVCVGSEHPRVMLLDRVTDPHNVGAILRSA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    +I T+ +S  E+  LAKSASGALE  PY+R+ NL D ++ +   G+  +GL  
Sbjct: 130 EVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLADTIRALQGMGYIVLGLDG 189

Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +++  LEQ I+  +   IAL+LGAEG GLR KT+ET  S+  +   G   +LNVSNAAA+
Sbjct: 190 EARDTLEQAIEGKRDRPIALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNVSNAAAI 249

Query: 272 ALYITQ 277
           ALY T+
Sbjct: 250 ALYATR 255


>gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 314

 Score =  185 bits (469), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/273 (40%), Positives = 160/273 (58%), Gaps = 27/273 (9%)

Query: 29  DYKKMQSFNQK-SRHTSQPE----------------NLFLYGVHTVSAALNNPSRKIFQL 71
           D  +  + N + SRH S P                  L+LYG H V AAL N +RKI ++
Sbjct: 27  DCSEGDTMNHRESRHKSAPRRDPAKGGERPAKLPSNQLWLYGAHAVLAALANKARKIRRI 86

Query: 72  LATKNAL---ARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           + T  AL   A     A    P P  +T   Q +D+++   AVHQG+A+    L SP ++
Sbjct: 87  VLTVEALRSHAASIQRARALRPLPGEETTERQELDRLLPPGAVHQGIAVLAEHLESPGIE 146

Query: 128 AV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            +      R+  ++MVLD V DPHN+GAILRSA AF    ++ T R+SP E+  LAKSAS
Sbjct: 147 DIGRLAQNRDHAVVMVLDQVTDPHNVGAILRSAAAFGALAVVVTDRHSPEETGTLAKSAS 206

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GALE +P +R++N+  AL+++   GF T GL+ ++ + L Q   + KIAL++GAEG+GLR
Sbjct: 207 GALEVMPLVRVTNMVRALEQLKEAGFWTAGLAGEATQTLAQAKLSGKIALVMGAEGEGLR 266

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             T+E    +  L M  ++++LNVSNAAA++LY
Sbjct: 267 RLTREHCDHLVKLPMSDLVESLNVSNAAAISLY 299


>gi|110680725|ref|YP_683732.1| RNA methyltransferase [Roseobacter denitrificans OCh 114]
 gi|109456841|gb|ABG33046.1| RNA methyltransferase, TrmH family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 257

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 147/246 (59%), Gaps = 7/246 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ + +   E ++L+G+H V  AL NP+R+  QL+ T NA A+L          P + V 
Sbjct: 11  EQDKKSENRETIWLFGLHAVRDALENPARQKLQLIVTLNAQAKLAGAIEAAGITP-EVVD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154
           P+     +   +VHQG ALE  PL   +L+ V        +++LD V DPHN+GAILRSA
Sbjct: 70  PRKFSAPLDPGSVHQGAALEVKPLNWGSLEDVCVGAEHPRVLLLDRVTDPHNVGAILRSA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    +I T+ +S  E+  LAKSASGALE  PY+R+ NL+D ++ +   G+  +GL  
Sbjct: 130 EVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLSDTIRALQGMGYIVLGLDG 189

Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++   LEQ I+  +   +AL+LGAEG GLR KT+ET  S+  +   G   +LNVSNAAA+
Sbjct: 190 EASDTLEQAIEGKRDRPVALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNVSNAAAI 249

Query: 272 ALYITQ 277
           ALY TQ
Sbjct: 250 ALYATQ 255


>gi|300022432|ref|YP_003755043.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 285

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/222 (42%), Positives = 143/222 (64%), Gaps = 4/222 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L L+G+H V AAL NP R++ +L+ T+NA  RL  +A  P    +  V P+ +D+++G +
Sbjct: 50  LVLFGLHAVEAALKNPKRRVHRLMLTENAERRL-IEAVGPITAKIDRVTPRDLDRLLGPD 108

Query: 109 AVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            VHQG+ALET PL  P  D +    + + L+VLD V DPHN+GAILRS+  F   G++ T
Sbjct: 109 TVHQGVALETEPLPEPDWDELARAADGRPLIVLDQVTDPHNVGAILRSSAVFGASGLVMT 168

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R+SP  + VLAKSASGALE IP   ++NL  A++++   GF  +GL  +++  +E    
Sbjct: 169 HRHSPPLNGVLAKSASGALELIPVALVANLARAMEELREAGFALVGLDGEAETAIEDLDW 228

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +   AL++G+EGKGLR  T++T  ++A +   G + +LNVSN
Sbjct: 229 SRPTALVMGSEGKGLRELTRKTCDTLARISTDGPVASLNVSN 270


>gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum
           lavamentivorans DS-1]
          Length = 288

 Score =  182 bits (461), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/233 (46%), Positives = 144/233 (61%), Gaps = 12/233 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVK--TVPPQTIDKI 104
           +LYG H V AAL NP+R   +L+ T+NA   LAR    A LP   PV+   +  + I  +
Sbjct: 53  YLYGFHAVLAALANPARLAERLVLTRNAETELAR--QGARLPADLPVRLEIMENEDIAAL 110

Query: 105 VGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +   AVHQG+AL  +PL  P LD   A   +  ++VLD V DPHN GAILRSA  F    
Sbjct: 111 LPAGAVHQGIALRASPL--PDLDVVEACEGTNRVVVLDQVTDPHNFGAILRSAAVFGAGA 168

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +ITT+R SPS   VLAK+ASGALE +   RI+NL  A++++   GF+ +GL  + +  L 
Sbjct: 169 LITTERNSPSLGGVLAKAASGALELVRVARITNLVRAIEELKELGFEVVGLDGEGEASLP 228

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               + ++AL+LGAEG GLR  T+E    +A L   G +K+LNVSNAAAVALY
Sbjct: 229 DLKLSPRVALVLGAEGAGLRRLTREHCDLLARLPAAGGMKSLNVSNAAAVALY 281


>gi|254450751|ref|ZP_05064188.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 238]
 gi|198265157|gb|EDY89427.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 238]
          Length = 263

 Score =  181 bits (460), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 154/255 (60%), Gaps = 19/255 (7%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------PHPF 91
           ++++  +  E ++L+G+H V  AL NP+R+  + + TKNA  RL    ++      P P 
Sbjct: 11  ERNKRAAANETVWLFGIHAVRDALLNPAREKLRFVVTKNAFDRLGGAVDIGLKDGGPEP- 69

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPH 145
             +   P+     +  ++VHQG ALE  PL    +      D V N   +++LD V DPH
Sbjct: 70  --EMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCMGDGV-NPPRVVLLDKVTDPH 126

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILRSA  F    +I   R++  E+  LAK+ASGA+E  PY+R+ NL DA+ ++ + 
Sbjct: 127 NVGAILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMERQPYLRVRNLADAIVELQAM 186

Query: 206 GFQTIGLSSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           G+  +GL  ++++ +EQ  E K D+ IAL+LGAEG GLR KT+ET  ++  +   G   +
Sbjct: 187 GYLVLGLDGEAEQTIEQVVEGKRDRAIALVLGAEGPGLRDKTKETCDALVRIDFAGEFGS 246

Query: 263 LNVSNAAAVALYITQ 277
           LNVSNAAAVALY+++
Sbjct: 247 LNVSNAAAVALYVSR 261


>gi|261883694|ref|ZP_06007733.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 160

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L  +R S LL+VLD V DPHN+GA
Sbjct: 3   PFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGA 62

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSAVAF    +ITT R+SP E+ VLAK+ASGALE I +I + NL +A++++H+ GFQT
Sbjct: 63  IMRSAVAFGAGALITTSRHSPQETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQT 122

Query: 210 IGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPK 243
           IGL  DS+ PLE E  +  ++IAL+LGAEG GLR K
Sbjct: 123 IGL--DSQGPLEMEATLSGNRIALVLGAEGXGLRQK 156


>gi|254441653|ref|ZP_05055146.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 307]
 gi|198251731|gb|EDY76046.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 307]
          Length = 291

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/281 (38%), Positives = 157/281 (55%), Gaps = 21/281 (7%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRH--TSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
             D  +       RD KK      K R+   +  E ++L+G+H V  AL NP R+  + +
Sbjct: 14  FGDGRHEGANAKDRDMKKPTWVVDKERNKRAAANETVWLFGIHAVRDALLNPVREKLRFV 73

Query: 73  ATKNALARLDWDANL------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            TKNA  RL    ++      P P   +   P+     +  ++VHQG ALE  PL    +
Sbjct: 74  VTKNAFDRLGDAVSIGLKDGGPEP---EMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKI 130

Query: 127 ------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D V N   +++LD V DPHN+GAILRSA  F    +I   R++  E+  LAK+A
Sbjct: 131 EDRCMGDGV-NPPRVVLLDKVTDPHNVGAILRSAEVFGAQAVIAMNRHAAPETGALAKTA 189

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDK-IALILGAEG 237
           SGA+E  PY+R+ NL DA+ ++   G+  +GL  ++++ +EQ +  K D+ IAL+LGAEG
Sbjct: 190 SGAMERQPYLRVRNLADAIVELQGMGYMVLGLDGEAEQTIEQVVDGKTDRAIALVLGAEG 249

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            GLR KT+ET  ++  +   G   +LNVSNAAAVALY T++
Sbjct: 250 PGLRDKTKETCDALVKIDFAGEFGSLNVSNAAAVALYATRS 290


>gi|209964021|ref|YP_002296936.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
           centenum SW]
 gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
           centenum SW]
          Length = 251

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 142/237 (59%), Gaps = 13/237 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW------DANLPHPFPVKTVPPQTIDK 103
            +YG+H V+AA  NP R+   L  T++ALA LD       +  L  P P   +  + +DK
Sbjct: 10  LIYGLHPVAAAWINPERRCRGLYVTESALAALDGAVQRAAELGLERPDP-TFLEKEELDK 68

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           ++   AVHQG+AL+TAPL    ++ V          L++VLD V DPHN+GAI+RSA AF
Sbjct: 69  LLPPGAVHQGVALDTAPLPEVAVEDVCIAAESEPQALVIVLDQVTDPHNVGAIMRSAAAF 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I   R++P  + VLAK+ASGA++ +P +R++NL  AL  +   GF T+GL     
Sbjct: 129 GARAVIVQDRHAPPVTGVLAKTASGAVDAVPLVRVTNLARALDTLKQAGFWTVGLDESGA 188

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +PL +     + AL+LG+EG+GLR  T E    +A L   G + +LNVSNAAAVALY
Sbjct: 189 RPLHEVDLTGRTALVLGSEGEGLRRLTGERCDEIARLPTGGPVGSLNVSNAAAVALY 245


>gi|260753219|ref|YP_003226112.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552582|gb|ACV75528.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 249

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 142/234 (60%), Gaps = 9/234 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +SR+ + P +   +G H V AALNNP R I ++ AT+ ALA      N+    PV     
Sbjct: 3   RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPY----NIDKSIPVTLSDV 58

Query: 99  QTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRS 153
             + + V  +A HQG+ +E  PL    LS  LD    + + L+VLD V DPHN+GAILRS
Sbjct: 59  ADLGRFVPNDAPHQGIVIEVDPLPDIWLSDLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   GIIT  R++P ES  LA++ASGALE +P++R++NL  AL ++   G+  IGL+
Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             S+  L Q + + K AL+LGAEG+GLR  T+     +A L +   I++LNVSN
Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|163741609|ref|ZP_02149000.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
           gallaeciensis 2.10]
 gi|161385343|gb|EDQ09721.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
           gallaeciensis 2.10]
          Length = 290

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 7/243 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++S+  +  E ++L+G+H V  AL NP R+  +L+ T+NA A+L  DA        + + 
Sbjct: 44  EQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVETEVID 102

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQL--LMVLDHVNDPHNIGAILRSA 154
           P+  +  + K++VHQG ALE  PL    LD     +++  +++LD V DPHN+GAILRSA
Sbjct: 103 PRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRSA 162

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I T+  S  E+  LAK+ASGALE  PY+R+ NL D + ++   GF  +GL  
Sbjct: 163 EVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLDG 222

Query: 215 DSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++++ +E  +   K D +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA+
Sbjct: 223 EAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAAI 282

Query: 272 ALY 274
           ALY
Sbjct: 283 ALY 285


>gi|163738679|ref|ZP_02146093.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
           BS107]
 gi|161388007|gb|EDQ12362.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
           BS107]
          Length = 290

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 149/245 (60%), Gaps = 7/245 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++S+  +  E ++L+G+H V  AL NP R+  +L+ T+NA A+L  DA        + + 
Sbjct: 44  EQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVEAEVID 102

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQL--LMVLDHVNDPHNIGAILRSA 154
           P+  +  + K++VHQG ALE  PL    LD     +++  +++LD V DPHN+GAILRSA
Sbjct: 103 PRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRSA 162

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I T+  S  E+  LAK+ASGALE  PY+R+ NL D + ++   GF  +GL  
Sbjct: 163 EVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLDG 222

Query: 215 DSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++++ +E  +   K D +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA+
Sbjct: 223 EAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAAI 282

Query: 272 ALYIT 276
           ALY +
Sbjct: 283 ALYAS 287


>gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 263

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 5/220 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           L+G H V AAL NP R+  +L AT+  +A LD    LP  FPV+    Q + ++V K+A 
Sbjct: 33  LWGRHAVEAALKNPDRQHRKLWATREGVASLD--GELPPDFPVEYADVQDLARLVAKDAP 90

Query: 111 HQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           HQGL LE A L    LD V +   ++ ++VLD V DPHN+GAI+RSAVAF+   ++T  R
Sbjct: 91  HQGLVLECAALEDRFLDEVLDGDPARPIIVLDQVTDPHNVGAIMRSAVAFNAAALVTQDR 150

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
           ++P E  V+ KSASGALE +P+IR+ NL  A+++M   G+  IGL+  +     + +   
Sbjct: 151 HAPPEGGVIGKSASGALETLPWIRVVNLARAMEEMAEAGYWRIGLTGHTDTTFAEALPAG 210

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +A++LGAEG+G+R   +    ++A L +   I++LNVSN
Sbjct: 211 PVAIVLGAEGEGMRQNIETHCDALAKLPISNEIESLNVSN 250


>gi|241761486|ref|ZP_04759574.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374393|gb|EER63890.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 249

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 142/234 (60%), Gaps = 9/234 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +SR+ + P +   +G H V AALNNP R I ++ AT+ ALA      N+    PV     
Sbjct: 3   RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPY----NIDKSIPVTLSDV 58

Query: 99  QTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRS 153
             + + V  +A HQG+ +E  PL    L+  LD    + + L+VLD V DPHN+GAILRS
Sbjct: 59  ADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   GIIT  R++P ES  LA++ASGALE +P++R++NL  AL ++   G+  IGL+
Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             S+  L Q + + K AL+LGAEG+GLR  T+     +A L +   I++LNVSN
Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|56551128|ref|YP_161967.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|56542702|gb|AAV88856.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 249

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 142/234 (60%), Gaps = 9/234 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +SR+ + P +   +G H V AALNNP R I ++ AT+ ALA      N+    PV     
Sbjct: 3   RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPY----NIDKSIPVTLSDV 58

Query: 99  QTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRS 153
             + + V  +A HQG+ +E  PL    L+  LD    + + L+VLD V DPHN+GAILRS
Sbjct: 59  ADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   GIIT  R++P ES  LA++ASGALE +P++R++NL  AL ++   G+  IGL+
Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             S+  L Q + + K AL+LGAEG+GLR  T+     +A L +   I++LNVSN
Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|310816761|ref|YP_003964725.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
           vulgare Y25]
 gi|308755496|gb|ADO43425.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
           vulgare Y25]
          Length = 262

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 147/247 (59%), Gaps = 11/247 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           +++R  S  E ++L+G+H V  AL NP R   +L+ T+NA  +L  DA       V+   
Sbjct: 11  EQARRVSAQETVWLFGLHAVRDALLNPERTRLRLVVTQNAADKLA-DAIAASGMEVELSD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQ--LLMVLDHVNDPHNIGAI 150
           P+     +  E+VHQG ALE  PL   +L  V      N Q   L++LD V DPHN+GAI
Sbjct: 70  PRKFAAPIDPESVHQGAALEVKPLDWGSLADVALSLKDNGQPPRLVLLDRVTDPHNVGAI 129

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRS+  F    ++  +R+S  E+  LAK+ASGALE  PYIR+ NL DA+ ++ + G+  +
Sbjct: 130 LRSSEVFGALAVVGVQRHSAPETGALAKTASGALERQPYIRVRNLGDAMDELRAMGYLLL 189

Query: 211 GLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GL  + ++ +EQ I+  +   +A+++GAEG GLR KT+E    +  +   G   +LNVSN
Sbjct: 190 GLDGEGEQTIEQAIEGRRDRPVAIVMGAEGPGLREKTRELCDHLVRIPAAGGFASLNVSN 249

Query: 268 AAAVALY 274
           AAAVALY
Sbjct: 250 AAAVALY 256


>gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 265

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 136/220 (61%), Gaps = 5/220 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           L+G H V AAL NP+R+  +L AT+  +  LD    LP  F V+      + ++V K+A 
Sbjct: 33  LWGRHPVEAALKNPARQHRKLWATREGIDSLD--GELPPDFAVEYAEVTDLARLVAKDAP 90

Query: 111 HQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           HQGL LE  PL    LD V N   ++ ++VLD V DPHN+GAILRSA AF    I+T  R
Sbjct: 91  HQGLVLECEPLEDVFLDDVANGDPARPVVVLDQVTDPHNVGAILRSAAAFGAACIVTQDR 150

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
           ++P E  VLAKSASGALE +P++R+ NL  AL ++   G+  IGL+ +++  L   +   
Sbjct: 151 HAPPEGGVLAKSASGALETVPWVRVVNLARALDELADLGYWRIGLAGEAEATLSGSLTTG 210

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +AL+LGAEG+G+R    +   ++A L +   I++LNVSN
Sbjct: 211 ALALVLGAEGEGMRHNIAQHCDTLAKLPITSAIESLNVSN 250


>gi|126735336|ref|ZP_01751082.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
 gi|126715891|gb|EBA12756.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
          Length = 284

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/266 (37%), Positives = 152/266 (57%), Gaps = 10/266 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           AK+    +  K + +  Q  R  +Q E ++L+G+H V  AL NP+R+  +L+ T+NAL R
Sbjct: 21  AKVGTQMKKPKWVIAKEQAKRQAAQ-ETVWLFGLHAVRDALENPARQKLRLVVTRNALER 79

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LL 135
           L  DA        +   P+     +  ++VHQG ALE  PL   +L+ V          +
Sbjct: 80  LG-DAVAQSGMEPEISDPRKFAAPLDPQSVHQGAALEVKPLDWGSLEDVALGDGPMPPRI 138

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD V DPHN+GAILRSA  F    ++  +R+S  E+  LAK+ASGALE  PY+R+ NL
Sbjct: 139 VLLDRVTDPHNVGAILRSAEVFGARAVVAVQRHSAPETGALAKTASGALERQPYLRVRNL 198

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMA 252
            DA++ +   G+  +GL  ++   +E  ++  +   +AL++GAEG GLR KT+ET   + 
Sbjct: 199 ADAMEALKGMGYLVLGLDGEADLTVEAAVEGKRDRPVALVMGAEGPGLREKTRETCNELV 258

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            +       +LNVSNAAAVALY  + 
Sbjct: 259 KIDAAAGFGSLNVSNAAAVALYAVKG 284


>gi|260430943|ref|ZP_05784914.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414771|gb|EEX08030.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 257

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 149/249 (59%), Gaps = 9/249 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           +++R  +  E ++L+G+H V  AL NP R+  +L+ T+NA  +L  DA        + V 
Sbjct: 11  EQARKAAGSETVWLFGLHAVRDALMNPKRQKLRLIVTRNAQDKLA-DAIAASGIEPELVD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            +     +   +VHQG+ALE  PL    L+       N ++L+ LD V DPHN+GAILRS
Sbjct: 70  ARRFTAPIDPGSVHQGVALEVKPLEWGGLAENCIGRENPRVLL-LDRVTDPHNVGAILRS 128

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + GF  +GL 
Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFLVLGLD 188

Query: 214 SDSKKPLEQEI--KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++ + +E  +  K D+ +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 189 GEADQTIEAALDGKRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAA 248

Query: 271 VALYITQNH 279
           +ALY +Q H
Sbjct: 249 IALYASQPH 257


>gi|163746955|ref|ZP_02154312.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380069|gb|EDQ04481.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 258

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/246 (39%), Positives = 146/246 (59%), Gaps = 7/246 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ +     + ++L+G+H V  AL NP+R+  QL+ T NA A+L+ DA        + V 
Sbjct: 11  EQDKKADAAQTVWLFGLHAVRDALMNPNREKLQLMVTPNAQAKLE-DAIAEAGIAPEVVD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154
           P+     +   +VHQG  LE  PL    L+ V     +  L++LD V DPHN+GAILRSA
Sbjct: 70  PRKFRPPLDPNSVHQGAVLEVKPLNWGGLEDVAIGDTAPRLLLLDRVTDPHNVGAILRSA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I TK +S  E+  LAK+ASGALE  PY+R+ NL DA++ +   G+  +GL  
Sbjct: 130 EVLGASAVIGTKHHSAPETGALAKTASGALERQPYLRVRNLADAIRALQGMGYLVLGLDG 189

Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++ + +E  ++  +   +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAAA+
Sbjct: 190 EATQTIETAVEGRRDRPVALVLGAEGPGLREKTRETVDALVRIDAAGGFGSLNVSNAAAI 249

Query: 272 ALYITQ 277
           ALY ++
Sbjct: 250 ALYASR 255


>gi|83951350|ref|ZP_00960082.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
           nubinhibens ISM]
 gi|83836356|gb|EAP75653.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
           nubinhibens ISM]
          Length = 259

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/250 (38%), Positives = 148/250 (59%), Gaps = 9/250 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++  S  E ++L+G+H V  AL NP+R   +L+ TKNA  +L  DA        +   
Sbjct: 11  EQAKKASAAETVWLFGLHAVRDALMNPARDKLRLIVTKNACDKLQ-DAIDAAGITPEMAD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILR 152
           P+     +  ++VHQG ALE  PL   +L+ V       +  L++LD V DPHN+GAILR
Sbjct: 70  PRKFSAPIDPQSVHQGAALEVKPLNWGSLEDVALREGVGAPRLLLLDRVTDPHNVGAILR 129

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I  +  S  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + GF  +GL
Sbjct: 130 SAEVFGAQAVIAPRHGSAPETGALAKTASGALERQPYLRVRNLADAISELQAMGFLVLGL 189

Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           + +++  ++  +   ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAA
Sbjct: 190 AGEAEDTIDAALDGMRDRPVALVLGAEGPGLRQKTRETCDKLVKIPFAGGFGSLNVSNAA 249

Query: 270 AVALYITQNH 279
           AV+LY ++  
Sbjct: 250 AVSLYASRER 259


>gi|254464985|ref|ZP_05078396.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium Y4I]
 gi|206685893|gb|EDZ46375.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium Y4I]
          Length = 258

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 147/243 (60%), Gaps = 7/243 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++S+  +  E ++L+G+H V  AL NP R+  +L+ T+NA  +L  DA        + + 
Sbjct: 12  EQSKRAAAAETVWLFGLHAVRDALLNPKREKLRLMVTQNAQVKLA-DAIAESGIEAEVID 70

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSA 154
           P+  +  +  ++VHQG ALE  PL    L      R +  +++LD V DPHN+GAILRSA
Sbjct: 71  PRKFNPPIDAQSVHQGAALEVKPLNWGGLAENCIGREAPRVLLLDRVTDPHNVGAILRSA 130

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I T+ +S  E+  LAK+ASGALE  PY+R+ NL D + ++ + GF  +GL  
Sbjct: 131 EVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGFIVLGLDG 190

Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++++ +E  ++  +   +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAAA+
Sbjct: 191 EAEQTIETALEGKQHLPVALVLGAEGPGLRQKTKETVDALVKIGAAGGFGSLNVSNAAAI 250

Query: 272 ALY 274
           ALY
Sbjct: 251 ALY 253


>gi|87199385|ref|YP_496642.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135066|gb|ABD25808.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 271

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/224 (43%), Positives = 136/224 (60%), Gaps = 5/224 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVG 106
           + L+G H V AAL NP+R   +L  T+ A+  +  D DA LP   PV+      + ++V 
Sbjct: 34  IRLWGRHAVEAALTNPNRDAKKLWGTREAIQAMLDDHDAELPASLPVEYAQAADLGRLVA 93

Query: 107 KEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           K+A HQGL L+ APL    LD V      + ++VLD V DPHN+GAILRS  AF    ++
Sbjct: 94  KDAPHQGLVLDCAPLDDVVLDDVLDEAEGRTIVVLDSVTDPHNVGAILRSCAAFDVAALV 153

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
           T  R++P ES  LAKSASGALE +P++R+ NL+ AL++M   G+  IGL  D K      
Sbjct: 154 TQDRHAPPESGTLAKSASGALEIVPWVRVVNLSRALERMSEEGYWRIGLDGDGKAVFPAA 213

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + +  +AL+LGAEG+GLR    +   S+A L +   I++LNVSN
Sbjct: 214 LPSGPVALVLGAEGEGLRHNVAQHCDSIARLPIASAIESLNVSN 257


>gi|296116988|ref|ZP_06835589.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976470|gb|EFG83247.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 306

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 139/239 (58%), Gaps = 2/239 (0%)

Query: 38  QKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           ++ R    P    +LYG H V AAL+NP R + QLL T  A A L+       P   + V
Sbjct: 61  ERGRAEVAPRGTCWLYGTHAVMAALSNPHRHLRQLLTTAEAQAALEERMGRALPIQPQRV 120

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
               ID I G++AVHQG+AL    L +P L D V     +++LD V DP NIGAILRSA 
Sbjct: 121 DRARIDSICGRDAVHQGIALLADLLDTPALEDIVERPGPVLLLDQVTDPRNIGAILRSAA 180

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF    +I   R +P E+  LAK+ASGALE +P +R+ NL+  +  + S G  T+GL + 
Sbjct: 181 AFGAAAVIVQDRNAPEETGALAKAASGALEVVPLVRVVNLSRTIDALKSHGMWTVGLDAG 240

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    +  ++AL+LGAEG GLR  T+E    +A L M G +++LNVSNAAAVALY
Sbjct: 241 GGILDGASFRQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSGDMESLNVSNAAAVALY 299


>gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium
           ATCC 15444]
          Length = 269

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/247 (39%), Positives = 147/247 (59%), Gaps = 19/247 (7%)

Query: 37  NQK-SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           NQ+ SR   +   ++L+G H V AAL NP+RK   LLAT+NA  +L          P   
Sbjct: 23  NQRFSRRDEEGGPVWLWGTHAVMAALANPARKFHTLLATENAAQKL----------PAGV 72

Query: 96  VPPQ-----TIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148
           + PQ      ID  +   AVHQG+AL   PL    L+ V    +  + VLD V+DPHN+G
Sbjct: 73  ISPQLATAKEIDNRLPPGAVHQGIALRADPLEEAILEDVIAAGATRIAVLDQVSDPHNLG 132

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA AF  +G++   R +P  + ++AKSA+GA+E +  IR  N+  AL+++    F 
Sbjct: 133 AIFRSAAAFGFEGLVLQTRNAPPITGIVAKSAAGAIETVTEIRAVNIARALEQLAEADFH 192

Query: 209 TIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           T+GL+ +S + L++ +K   K+A++LGAEG GLRP   +  + +A + +   +++LNVSN
Sbjct: 193 TVGLAGESTRSLDEAVKGAAKVAIVLGAEGSGLRPAVAKACSELARIPIAAQMESLNVSN 252

Query: 268 AAAVALY 274
           AAA+A Y
Sbjct: 253 AAAIAFY 259


>gi|254475163|ref|ZP_05088549.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
 gi|214029406|gb|EEB70241.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
          Length = 294

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 144/244 (59%), Gaps = 9/244 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++  +  E ++L+G+H V  AL NP+R+  +L+ T NA  +L  DA        + + 
Sbjct: 48  EQAKKAASAETVWLFGLHAVRDALLNPNREKLRLMVTPNAETKLS-DAIAQSGIEAEVID 106

Query: 98  PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           P+  +  + K++VHQG  LE  PL    L+         ++L+ LD V DPHN+GAILRS
Sbjct: 107 PRKFNPPIDKQSVHQGAVLEVKPLNWGGLAENCIGAEAPRVLL-LDRVTDPHNVGAILRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+  S  E+  LAK+ASGALE  PY+R+ NL D + ++   GF  +GL 
Sbjct: 166 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 225

Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E  +   K D +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 226 GEAEQTIETVLEGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDFAGGFGSLNVSNAAA 285

Query: 271 VALY 274
           +ALY
Sbjct: 286 IALY 289


>gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 311

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 157/288 (54%), Gaps = 21/288 (7%)

Query: 5   SKKKSEKIFSL---KDSHYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           S++++E+  +    +  H A  R++  D   + +    K         + LYG+H V+AA
Sbjct: 20  SERQAERTGAKPQHQPQHGAASRQDQTDDAGRGRRGATKGGRAPAARGVLLYGLHPVAAA 79

Query: 61  LNNPSRKIFQLLATKNALARLD--------WDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
             NP R+I +LL T +  A L+             P   P   V    +D+++   AVHQ
Sbjct: 80  WTNPERRIHRLLVTDSGRAALEPVIAEARARGLQRPEASPADRV---ELDRMLPPGAVHQ 136

Query: 113 GLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           G+ ++ +PL    ++ + N      S +++ LD V DPHN+GAILRSA AF    ++ T+
Sbjct: 137 GIVIDASPLPELGIEDLCNELASEPSAVIVALDQVTDPHNVGAILRSAAAFGARAVVVTE 196

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R++P  + VLAKSASGALE +P +R++NL  AL  +   GF ++GL+      L +    
Sbjct: 197 RHAPETTGVLAKSASGALEAVPLVRVTNLARALTDLQQNGFWSVGLAESGPSTLAKLDLT 256

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K  L++GAEG GLR  T E   ++A L   G + +LNVSNAAAVALY
Sbjct: 257 GKTVLVMGAEGSGLRRLTMERCDAIARLPTGGPVGSLNVSNAAAVALY 304


>gi|254461438|ref|ZP_05074854.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2083]
 gi|206678027|gb|EDZ42514.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 259

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 97/245 (39%), Positives = 143/245 (58%), Gaps = 9/245 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ +  +  E ++L+G+H V  AL NP R   +L+ T+NA+ +L          P +   
Sbjct: 11  EQDKKAADAETVWLFGLHAVRDALMNPERTKLKLVVTRNAMDKLSEAIAFSELEP-EMCE 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-----LDHVNDPHNIGAILR 152
           P+  +  +  ++VHQG ALE  PL    L+ V       V     LD V DPHN+GAILR
Sbjct: 70  PRKFNAPLDPQSVHQGAALEVKPLTWGRLEEVCIGGTAAVPRAVLLDRVTDPHNVGAILR 129

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I T R S  E+  LAK+ASGALE  PY+RI NL ++++ +   G+  IGL
Sbjct: 130 SAEVFGASAVIGTHRGSAPETGALAKTASGALERQPYLRIRNLAESIESLQKMGYLVIGL 189

Query: 213 SSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             ++++ ++   E K D+ IAL++GAEG GLR KT++T  ++  +   G   +LNVSNAA
Sbjct: 190 DGEAEQTIDAYLEGKRDRPIALVMGAEGPGLREKTKDTVDALVKVEFAGAFGSLNVSNAA 249

Query: 270 AVALY 274
           AVALY
Sbjct: 250 AVALY 254


>gi|254512223|ref|ZP_05124290.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium KLH11]
 gi|221535934|gb|EEE38922.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium KLH11]
          Length = 257

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 142/248 (57%), Gaps = 7/248 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           +++R  +  E ++L+G+H V  AL NP R+  +L+ T+NA  +L          P +   
Sbjct: 11  EQARKVAAAETVWLFGLHAVRDALMNPKRQKLRLIVTRNAGDKLVEAIEFAGITP-EIAD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSA 154
           P+     +   +VHQG ALE  PL    L      R    +++LD V DPHN+GAILRSA
Sbjct: 70  PRKFTAPIDPGSVHQGAALEVKPLEWGGLAENCIGREHPRVLLLDRVTDPHNVGAILRSA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I T+ +S  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + GF  +GL  
Sbjct: 130 EVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFLVLGLDG 189

Query: 215 DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++   +E  +  D+   +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA+
Sbjct: 190 EADDTIESSLGGDRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAAI 249

Query: 272 ALYITQNH 279
           ALY ++  
Sbjct: 250 ALYASKTR 257


>gi|296284720|ref|ZP_06862718.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 249

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 136/221 (61%), Gaps = 6/221 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           L+G H V AAL NP RK  +L AT+  +  LD    LP  FPV+      +D++V ++A 
Sbjct: 17  LWGRHAVEAALLNPERKHRKLWATREGIESLD--GELPPDFPVEYADTPDLDRLVARDAP 74

Query: 111 HQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           HQGL LE APL    L+  + +    + +++LD V DPHN+GAILRSA AF    I+T  
Sbjct: 75  HQGLVLECAPLEERDLAEVIQSGEPGRPIVLLDQVTDPHNVGAILRSAAAFDAAAIVTQD 134

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R++P ES V+AKSASGALE +P++R+ NL  AL  +   GF  IGL+ +++  L + I  
Sbjct: 135 RHAPPESGVVAKSASGALETVPWVRVVNLARALDDLAERGFWRIGLAGEAEMTLAEAIPT 194

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +AL+LGAEG GLR        ++A L +   I++LNVSN
Sbjct: 195 GPVALVLGAEGAGLRHNIAGHCDALAKLPISDAIESLNVSN 235


>gi|329114437|ref|ZP_08243199.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
           pomorum DM001]
 gi|326696513|gb|EGE48192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
           pomorum DM001]
          Length = 318

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 153/269 (56%), Gaps = 13/269 (4%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQ 70
           +F  +  H    RR      ++ S   +    S P    +L+G H V+AALNNP R   +
Sbjct: 37  VFMRQPRHGRSARR-----PRVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYER 91

Query: 71  LLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-L 126
           LL T+    AL             P + V  Q +D ++G +AVHQG+AL  A +L P  L
Sbjct: 92  LLVTEENHPALEEATRSGRNVRVTP-ELVQRQRLDDLLGPDAVHQGVAL-LARILPPMPL 149

Query: 127 D-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           D A+     ++VLD V DP NIGAILRSA AF    ++   R +P E+AVLAK+ASGALE
Sbjct: 150 DEALERPGPVLVLDQVTDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALE 209

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P +R  NL+ A++++   G  T+GL +             ++AL+LGAEGKGLR  T+
Sbjct: 210 TVPMVREVNLSRAIEQLQKAGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTR 269

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E+   +A L+MPG +++LNVS AAAV LY
Sbjct: 270 ESCDEIAGLYMPGEMESLNVSVAAAVGLY 298


>gi|312113910|ref|YP_004011506.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219039|gb|ADP70407.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 310

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 131/232 (56%), Gaps = 11/232 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKE 108
           LYG+H+V AAL NP R+I     T+NA ARL    DA            P  +D + G  
Sbjct: 72  LYGLHSVEAALANPKRRIRHAWLTENAAARLAPLLDA---RKIAATLALPADLDALTGPG 128

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           AVHQG  L+  PL  P LD   ++       +++LD V DPHN+GA+LRSA AF    +I
Sbjct: 129 AVHQGAVLQVEPLAQPGLDDFLDALGDAPATVVILDQVTDPHNVGAVLRSAAAFGIGALI 188

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
              R+SP  +A LAKSASG LEH+P I + NL   L+K+    F  IG  S+  +  +  
Sbjct: 189 VQDRHSPPLTAALAKSASGGLEHVPVIEVVNLARVLEKLKERDFLCIGFDSEGAQRFDAA 248

Query: 224 IKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    ++A + GAE KGLR   +E   ++A L  PG IK+LN+SNAAA+  +
Sbjct: 249 LAGGRRVAFVFGAEDKGLRRLVREGCDAIAALSAPGPIKSLNISNAAAIVFH 300


>gi|258541781|ref|YP_003187214.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632859|dbj|BAH98834.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256635916|dbj|BAI01885.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256638971|dbj|BAI04933.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642025|dbj|BAI07980.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645080|dbj|BAI11028.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648135|dbj|BAI14076.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651188|dbj|BAI17122.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654179|dbj|BAI20106.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 280

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/249 (42%), Positives = 147/249 (59%), Gaps = 8/249 (3%)

Query: 32  KMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANL 87
           ++ S   +    S P    +L+G H V+AALNNP R   +LL T+    AL         
Sbjct: 14  RVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYERLLVTEENHPALEEATRSGRG 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LD-AVRNSQLLMVLDHVNDPH 145
               P + V  Q +D ++G +AVHQG+AL  A +L P  LD A+     ++VLD V DP 
Sbjct: 74  VRVAP-ELVQRQRLDDLLGPDAVHQGVAL-LARVLPPMPLDEALERPGPVLVLDQVTDPR 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGAILRSA AF    ++   R +P E+AVLAK+ASGALE +P +R  NL+ A++++   
Sbjct: 132 NIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALETVPMVREVNLSRAIEQLQKS 191

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G  T+GL +             ++AL+LGAEGKGLR  T+E+   +A L+MPG +++LNV
Sbjct: 192 GCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTRESCDEIAGLYMPGEMESLNV 251

Query: 266 SNAAAVALY 274
           S AAAV LY
Sbjct: 252 SVAAAVGLY 260


>gi|83955674|ref|ZP_00964254.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
           NAS-14.1]
 gi|83839968|gb|EAP79144.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
           NAS-14.1]
          Length = 258

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/239 (39%), Positives = 145/239 (60%), Gaps = 7/239 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + ++L+G+H V  AL NP+R+  +L+ T NA  +L+ +A        + V P+     + 
Sbjct: 20  QTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLE-EAIAKAGIEPEVVDPRKFRPPLD 78

Query: 107 KEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             +VHQG  LE  PL   TL  V     +  +++LD V DPHN+GAILRSA       ++
Sbjct: 79  PGSVHQGAVLEVKPLSWGTLKDVCIGAEAPRVLLLDRVTDPHNVGAILRSAEVLGASAVV 138

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222
             + ++  E+  LAK+ASGALE  PY+R+ NL DA++++ S G+  +GL  ++   +E  
Sbjct: 139 GMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYLVLGLDGEADMTVESA 198

Query: 223 -EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E K D+ +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAAA+ALY +++H
Sbjct: 199 LEGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAAIALYASRDH 257


>gi|58038971|ref|YP_190935.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
 gi|58001385|gb|AAW60279.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
          Length = 282

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/226 (42%), Positives = 138/226 (61%), Gaps = 6/226 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG H V AAL NP R I   LAT+ A A  +  +  P     + V  + +D++  ++A
Sbjct: 56  WIYGHHAVQAALANPERVIHDFLATREAAASFENASRKP-----QIVDRERLDRLCERDA 110

Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           VHQG+ L   PL +  + D V     ++VLD V DP NIGAILRSA AF    ++   R 
Sbjct: 111 VHQGVCLRVEPLETLAIPDIVERKGPVLVLDQVTDPRNIGAILRSAAAFGAAALLVQDRN 170

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +P ES  +AK+ASGAL+ +P +R  NL+ ALQ + +  F  +GL +   +   +     +
Sbjct: 171 APQESGAMAKAASGALDVVPILREVNLSRALQALQAENFWVVGLDAGGTRLDGKSFAGRR 230

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +AL+LGAEG GLR  T+ET   +A ++MPG +++LNVSNAAAVALY
Sbjct: 231 VALVLGAEGAGLRRLTRETCDEIASVYMPGDMESLNVSNAAAVALY 276


>gi|126725688|ref|ZP_01741530.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2150]
 gi|126704892|gb|EBA03983.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2150]
          Length = 266

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 142/248 (57%), Gaps = 13/248 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ +       ++L+G+H V  AL NP R++ +L+ TKNA  RL  DA        +   
Sbjct: 13  ERQKRAEDALTVWLFGIHAVRDALLNPKRELLKLVVTKNAADRLA-DAIEQSGITPEICE 71

Query: 98  PQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           P+     +   +VHQG ALE  PL      S  +DA  + +LL  LD V DPHN+GAILR
Sbjct: 72  PRKFSAPLDAGSVHQGAALEVKPLKWTDLQSIAIDAGPHGRLLF-LDRVTDPHNVGAILR 130

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA       +I TKR +  E+  LAK+ASGALE  PY+RI NL D +++M + G+  +GL
Sbjct: 131 SAEVLGAAAVIATKRNAAPETGALAKTASGALERQPYVRIRNLADTMEEMKALGYILLGL 190

Query: 213 SSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +++  +E  I +        IAL+LGAEG GLR KT+ T  ++  +   G   +LNVS
Sbjct: 191 DGEAEDTMETVIASTLANGPRPIALVLGAEGPGLRDKTKATCDALMRIDSAGAFGSLNVS 250

Query: 267 NAAAVALY 274
           NAAAV+LY
Sbjct: 251 NAAAVSLY 258


>gi|332187397|ref|ZP_08389135.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
 gi|332012558|gb|EGI54625.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
          Length = 247

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/249 (39%), Positives = 144/249 (57%), Gaps = 21/249 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           RR HR     Q+ + + R          +G H V+AAL NP+R + ++  T+ ALA LD 
Sbjct: 3   RRGHR---PSQASSNRPR---------FWGRHAVTAALANPNRTVRKIWGTREALAALD- 49

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL-LMVL 138
              LP   P+       + ++V  +A HQGL  E  PL    L   L   ++ Q  L+VL
Sbjct: 50  ---LPPVVPITYADAADLGRLVPADAPHQGLVAEVDPLEDMWLGDLLHEGQDDQRPLVVL 106

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DPHN+GAILRSA AF   GI+T  R++P ES  +A+SASGALE +P+IR+ NL  A
Sbjct: 107 DQVTDPHNVGAILRSAAAFDALGIVTQDRHAPPESGTVARSASGALETVPWIRVVNLARA 166

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+++   GF  IGL+  + + L Q +   +I ++LGAEG+G+R  T+     +A L +  
Sbjct: 167 LEEIAEAGFWRIGLTGHANQTLAQAMGTQRICIVLGAEGEGMRQNTEAHCDELAKLPISP 226

Query: 259 IIKALNVSN 267
            +++LNVSN
Sbjct: 227 KVESLNVSN 235


>gi|149914472|ref|ZP_01903003.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
 gi|149811991|gb|EDM71824.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
          Length = 275

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 144/240 (60%), Gaps = 10/240 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++L+G+H V  AL NP+R   +L+ T+NA  RL  +A        +   P+     +  
Sbjct: 37  TVWLFGLHAVRDALMNPARVKLRLIVTRNAADRLG-EAIAVGGLEPEIADPRRFTAPLDP 95

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           ++VHQG ALE  PL    L+ V  S        +++LD V+DPHN+GAILRSA  F    
Sbjct: 96  QSVHQGAALEVKPLDWGPLEGVCASAPGELPPRVLLLDRVSDPHNVGAILRSAEVFGACA 155

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R+S  E+  LAK+ASGALE  PY+R++NL  A++ +   G+  +GL+ ++++ +E
Sbjct: 156 VIAPHRHSAPETGALAKTASGALERQPYLRVTNLGRAIEALQGMGYVVLGLAGEAERTIE 215

Query: 222 QEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + ++  +   +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAAVALY ++ 
Sbjct: 216 EALEGRRSGPVALVLGAEGPGLREKTRETCDELVRIAFSGDFGSLNVSNAAAVALYASRR 275


>gi|260576862|ref|ZP_05844845.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
 gi|259020899|gb|EEW24212.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
          Length = 265

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 142/237 (59%), Gaps = 8/237 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++  +  E ++L+G+H V  AL NP+R+  +L+ TKNAL +L+ DA        + V 
Sbjct: 15  ERAKRAAASETVWLFGLHAVRDALLNPAREKLRLVLTKNALDKLE-DAVAACGMAPEVVE 73

Query: 98  PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           P+  D  + + +VHQG AL+  PL    L+    +   + L+++LD V DPHN+GA+LRS
Sbjct: 74  PRQFDVPIDEGSVHQGAALQVRPLNWGKLADVCISGTGAPLVVLLDRVTDPHNVGAVLRS 133

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL DA+Q++ + G+  +GL 
Sbjct: 134 AEVFGARAVIAPARHSAPETGALAKTASGALERQPYLRVVNLADAMQELQAMGYVLLGLD 193

Query: 214 SDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +++  L Q   E     I L+LGAEG GLR +T+ET   +  +   G   +LNVSN
Sbjct: 194 GEAEVTLAQAVAEAGTRPIGLVLGAEGPGLRDRTRETCDRLVRIPAQGGFGSLNVSN 250


>gi|148555341|ref|YP_001262923.1| RNA methyltransferase [Sphingomonas wittichii RW1]
 gi|148500531|gb|ABQ68785.1| RNA methyltransferase, TrmH family, group 3 [Sphingomonas wittichii
           RW1]
          Length = 247

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/237 (40%), Positives = 141/237 (59%), Gaps = 11/237 (4%)

Query: 38  QKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           +K    SQP       +G H V AAL NP R + +L  T+ A++ L+    LP   PV  
Sbjct: 2   RKGHRPSQPAQGRPRFWGRHAVIAALANPDRTVKRLWGTREAVSALE----LPPVIPVTY 57

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL-LMVLDHVNDPHNIGAI 150
                + ++V  +A HQGL +E  PL    L   L+A +  +  L+VLD V DPHN+GA+
Sbjct: 58  ADAADLGRLVPHDAPHQGLVIEVDPLPDIWLGDLLEAAQGDRRPLVVLDQVTDPHNVGAV 117

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA AF   GI+T  R++P ES  LA+SASGALE +P++R+ NL  AL ++   GF  I
Sbjct: 118 LRSAAAFDAVGIVTQDRHAPPESGALARSASGALELVPWVRVVNLARALDEIAEAGFWRI 177

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GLS  ++  L Q + + +IA++LGAEG+G+R  T+     +A L +   +++LN+SN
Sbjct: 178 GLSGHARGTLAQVMGDSRIAIVLGAEGEGMRQNTEAHCDELAKLPISPKVESLNISN 234


>gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 304

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 133/222 (59%), Gaps = 5/222 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L+G H V AAL NP+R   +L  T+ A+  +  D +A LP   PV+      + ++V ++
Sbjct: 49  LWGRHAVEAALTNPARTAKKLWGTREAIQAMLDDHEAELPSSLPVEYAQAADLARLVARD 108

Query: 109 AVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           A HQGL L+ +PL    LD V +    + L++LD V DPHN+GAILR+  AF    +IT 
Sbjct: 109 APHQGLVLDCSPLEDIALDEVLDEAEGRTLVILDQVTDPHNVGAILRTCAAFDVAAMITQ 168

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R++P ES  LAK+ASGALE +P++R+ NL+ AL+ +   G+  I L  + K      + 
Sbjct: 169 DRHAPPESGTLAKAASGALEVVPWVRVVNLSRALESIAEAGYWRIALDGEGKAEFPSALP 228

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              +AL+LGAEG+GLR    +   S+A L +   I++LNVSN
Sbjct: 229 TGPVALVLGAEGEGLRHNVLQHCDSVARLPISRAIESLNVSN 270


>gi|255263708|ref|ZP_05343050.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
           R2A62]
 gi|255106043|gb|EET48717.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
           R2A62]
          Length = 260

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 95/249 (38%), Positives = 145/249 (58%), Gaps = 9/249 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++S+  +  E ++L+G+H V  AL NP R   +L+ TKNA  +L  D       P +   
Sbjct: 11  ERSKRAAAAETVWLFGLHAVRDALLNPKRVKLRLIVTKNAHDKLAEDIGASGMEP-EMSD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILR 152
           P+     +  ++VHQG ALE   L    L+ V       +  +++LD V DPHN+GA+LR
Sbjct: 70  PRKFAAPIDPQSVHQGAALEVKGLDWGKLEDVCLGEEGRAPRVVLLDRVTDPHNVGAVLR 129

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    ++   R++  E+  LAK+ASGALE  PY+R+ NL DA++ +   G+  +GL
Sbjct: 130 SAEVFGASAVVAMSRHAAPETGALAKTASGALERQPYVRVRNLADAMETLKGMGYIVLGL 189

Query: 213 SSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             +++  +    E K D+ +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAA
Sbjct: 190 DGEAEGTIGAALEGKRDRPVALVLGAEGPGLREKTKETCDALVKIDFAGGFGSLNVSNAA 249

Query: 270 AVALYITQN 278
           AVALY ++ 
Sbjct: 250 AVALYASRE 258


>gi|85373568|ref|YP_457630.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786651|gb|ABC62833.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 262

 Score =  168 bits (425), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 143/237 (60%), Gaps = 5/237 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           +MQ      R T  P ++ L+G H V AAL NP+R   +L AT+  +A LD    LP  F
Sbjct: 16  RMQGGRGSGRAT--PGHVRLWGRHAVEAALLNPARVHRKLWATREGVASLD--GELPPDF 71

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150
           PV+      + ++V ++A HQGL LE   L    +D V    + +++LD V DPHN+GAI
Sbjct: 72  PVEYADVTDLARLVARDAPHQGLVLECEQLKDVYIDDVLEEGRPVVILDQVTDPHNVGAI 131

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA AF    I+T  R++P ES V+AKSASGALE +P++R+ NL  AL  +   G+  I
Sbjct: 132 LRSAAAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDTLAERGYWRI 191

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GL+ +++  L + +    +AL+LGAEG+G+R   +    ++A L +   I++LNVSN
Sbjct: 192 GLTGNTEATLAEALPAGPVALVLGAEGEGMRHNIEAHCDALARLPISNAIESLNVSN 248


>gi|126740104|ref|ZP_01755794.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           SK209-2-6]
 gi|126718923|gb|EBA15635.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           SK209-2-6]
          Length = 262

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 146/237 (61%), Gaps = 7/237 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +N++L+G+H V  AL NP+R+  +L+ T NA  +L+ DA        + V P+  +  + 
Sbjct: 24  DNVWLFGLHAVRDALMNPNREKLRLIVTLNAQNKLE-DAIAAAGITPEVVDPRRFNAPLD 82

Query: 107 KEAVHQGLALETAPLLSPTL-DAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             +VHQG ALE  PL   +L +    +++  +++LD V DPHN+GAILRSA       +I
Sbjct: 83  PNSVHQGAALEVKPLNWGSLAENCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGASAVI 142

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+ +S  E+  LAK+ASGALE  PY+R+ NL D + ++ + GF  +GL  +++  +E  
Sbjct: 143 GTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGFVVLGLDGEAEDTIESC 202

Query: 224 IKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++  K   +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA+ALY ++
Sbjct: 203 LQGRKDLPVALVLGAEGPGLRQKTKETVDHLVKIDASGGFGSLNVSNAAAIALYASK 259


>gi|83942841|ref|ZP_00955302.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
           sp. EE-36]
 gi|83846934|gb|EAP84810.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
           sp. EE-36]
          Length = 258

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 147/248 (59%), Gaps = 7/248 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ +     + ++L+G+H V  AL NP+R+  +L+ T NA  +L+ +A        + V 
Sbjct: 11  EQEKKADANQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLE-EAIARAGIEPEVVD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154
           P+     +   +VHQG  LE  PL    L  V     +  +++LD V DPHN+GAILRSA
Sbjct: 70  PRKFRPPLDPGSVHQGAVLEVKPLSWGALKDVCIGAEAPRVLLLDRVTDPHNVGAILRSA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  ++  + ++  E+  LAK+ASGALE  PY+R+ NL DA++++ S G+  +GL  
Sbjct: 130 EVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYLVLGLDG 189

Query: 215 DSKKPLEQEI--KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++   +E  +  K D+ +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAAA+
Sbjct: 190 EADMTVESALVGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAAI 249

Query: 272 ALYITQNH 279
           ALY +++H
Sbjct: 250 ALYASRDH 257


>gi|56696046|ref|YP_166400.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56677783|gb|AAV94449.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria pomeroyi
           DSS-3]
          Length = 257

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 95/254 (37%), Positives = 145/254 (57%), Gaps = 19/254 (7%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++  S  E ++L+G+H V  AL NP R+  +L+ T NA  +L              + 
Sbjct: 11  EQAKKASAAETVWLFGLHAVRDALMNPKREKLRLIVTLNAREKL------AEAIDAAGIE 64

Query: 98  PQTIDKI-----VGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           P+  D       +   +VHQG ALE  PL    L+       N ++++ LD V DPHN+G
Sbjct: 65  PELADARRFSAPIDPGSVHQGAALEVKPLNWGSLAEVAIGAENPRVIL-LDRVTDPHNVG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL DA+ ++   G+ 
Sbjct: 124 AILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADAITELQGMGYL 183

Query: 209 TIGLSSDSKKPLEQEI--KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  ++ + +E  +  + D+ +AL+LGAEG GLR KT+ET   +  +   G   +LNV
Sbjct: 184 VLGLDGEASETIEAALAGQTDRPVALVLGAEGPGLRQKTKETVDKLVKIDAAGGFGSLNV 243

Query: 266 SNAAAVALYITQNH 279
           SNAAA+ALY ++ H
Sbjct: 244 SNAAAIALYASKAH 257


>gi|332557678|ref|ZP_08412000.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|332275390|gb|EGJ20705.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 261

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 139/237 (58%), Gaps = 8/237 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL  DA        + V 
Sbjct: 14  ERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-DAIAESGLEPEIVD 72

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153
           P+     + + +VHQG ALE  PL   +L+ +  S     LL++LD V DPHN+GA+LRS
Sbjct: 73  PRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRS 132

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+  +GL 
Sbjct: 133 AEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGLE 192

Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++   L + ++      +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 193 GEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGEFGSLNVSN 249


>gi|86137721|ref|ZP_01056297.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           MED193]
 gi|85825313|gb|EAQ45512.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           MED193]
          Length = 263

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/244 (38%), Positives = 145/244 (59%), Gaps = 9/244 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++     E ++L+G+H V  AL NP R+  +L+ T NA  +L+ +A        + V 
Sbjct: 16  EQNKKAGGAETVWLFGLHAVRDALMNPQREKLRLIVTLNAQNKLE-EAIAASGVEPELVE 74

Query: 98  PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           P+  +  +   +VHQG ALE  PL    LS         ++++ LD V DPHN+GAILRS
Sbjct: 75  PRKFNAPLDPNSVHQGAALEVKPLNWGSLSENCIGAEIPRVIL-LDRVTDPHNVGAILRS 133

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    +I T+ +S  E+  LAK+ASGALE  PY+R+ NL D + ++ + G+  +GL 
Sbjct: 134 AEVFGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGYVVLGLD 193

Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E  ++  +   +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 194 GEAEQTIESCLEGRRDLPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 253

Query: 271 VALY 274
           +ALY
Sbjct: 254 IALY 257


>gi|89069652|ref|ZP_01156989.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
 gi|89044732|gb|EAR50838.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
          Length = 259

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 143/239 (59%), Gaps = 9/239 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            L+L+G+H V  AL NP R   +L+ TKNAL RL  DA        +   P+     +  
Sbjct: 21  TLWLFGLHAVRDALENPRRDKRRLVVTKNALDRLG-DAVGQAGLEPEISDPRKFAAPLDP 79

Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQL---LMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +VHQG ALE  PL   +L  V    S L   +++LD V+DPHN+GAILRSA  F    +
Sbjct: 80  GSVHQGAALEVRPLDWGSLADVCTAGSDLPPRVVLLDRVSDPHNVGAILRSAEVFGARAV 139

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK---KP 219
           I  +R+S  E+  LAK+ASGALE  PY+R++NL  A++++   G+   GL+ +++   +P
Sbjct: 140 IGVQRHSAPETGALAKAASGALERQPYLRVTNLARAMEELKDMGYLVAGLAGEAETDIRP 199

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAAVALY +++
Sbjct: 200 ALDGHRDRPVALVLGAEGPGLRDKTRETCDVLVRIDAAGGFGSLNVSNAAAVALYASRS 258


>gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 293

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/243 (39%), Positives = 137/243 (56%), Gaps = 2/243 (0%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93
           Q  N      S P+ + L+G H V  AL +  R    L AT+ A  +L  D+      P 
Sbjct: 48  QEKNPSPFRQSSPDVILLHGFHAVREALRSDQRTCLALYATEAAAEKLAPDSKAAGLAP- 106

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILR 152
             V  + + + +G + VHQG+ LE  PL    +  +   S +++VLD + DPHN+GAI+R
Sbjct: 107 HIVTAEDLSRRLGSQTVHQGVLLEARPLEPLDITEIPTRSGVVLVLDQITDPHNVGAIVR 166

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  D I+TT+R++P+   VLAK+ASG LEH+  + + NL  AL+ +    +  +GL
Sbjct: 167 TAAAFDVDAIVTTERHAPALGGVLAKAASGGLEHVQIVPVVNLARALETLGRLNYLRVGL 226

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            S ++    Q      IAL+LG EG GLR  T+E    +A L MPG IK+LNVSNA AV 
Sbjct: 227 DSAAEADFTQLPLQRPIALVLGGEGTGLRRLTREKCDFLARLDMPGKIKSLNVSNACAVV 286

Query: 273 LYI 275
           L +
Sbjct: 287 LTL 289


>gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HTCC2255]
 gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HTCC2255]
          Length = 264

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/261 (38%), Positives = 150/261 (57%), Gaps = 13/261 (4%)

Query: 28  RDYKKMQSFNQKSRHTS--QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           R  KK     +K R  S    + ++L+G+H V  AL NP R+  +L+ TKNA  +L   +
Sbjct: 4   RSKKKPLWIVEKERQKSAGSADTVWLFGLHAVRDALENPLRERIRLMVTKNASDKLS-SS 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLD 139
            +      + + P+  +  +  ++VHQG ALE  PL    +S T+ A RN +   L++LD
Sbjct: 63  IITSGIDAEIIDPRKFNPPIDPQSVHQGAALEVMPLDWGNMS-TVCAPRNDKKARLVILD 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DPHN+GAILRSA  F    +I T R S  E+  LAK+ASGALE  PY+R+ NL  ++
Sbjct: 122 RVTDPHNVGAILRSAEVFGARAVIATARNSAPETGALAKTASGALERQPYLRVRNLATSI 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQ--EI-KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           + +   G+  +GL   +K  ++   E+ +N  +A++LGAEG GLR  T++T   +  +  
Sbjct: 182 KSLQEMGYYVVGLDGTAKNSIDDIAELHQNSPLAIVLGAEGPGLRELTKQTCDELVKIDY 241

Query: 257 PGIIKALNVSNAAAVALYITQ 277
                +LNVSNA AVALY T+
Sbjct: 242 AATFGSLNVSNATAVALYATK 262


>gi|126729168|ref|ZP_01744982.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
           E-37]
 gi|126710158|gb|EBA09210.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
           E-37]
          Length = 274

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 141/247 (57%), Gaps = 8/247 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++  S  E ++L+G H V  AL NP R   +L+ T NA  +L  DA        +   
Sbjct: 28  EQAKRASAAETVWLFGHHAVRDALLNPRRVKLRLILTPNAAEKLG-DAVAEAGMEPEISD 86

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRS 153
           P+     +  ++VHQG ALE  PL    L+ V      +  L++LD V DPHN+GAILRS
Sbjct: 87  PRRFAAPLDPQSVHQGAALEVKPLDWGKLEDVALSGEGALRLVLLDRVTDPHNVGAILRS 146

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    +I T+ ++  E+  LAK+ASGALE  PY+R  NL D +  +   G+  +GL 
Sbjct: 147 AEVFGAQAVIGTRHHAAPETGALAKTASGALERQPYLRERNLADTITALQGIGYIVLGLD 206

Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +++  +E  ++  +   IAL+LGAEG GLRPKT+ET  ++  +       +LNVSNAAA
Sbjct: 207 GEAETTIEDAVEGKRDRPIALVLGAEGPGLRPKTRETVDALVKIPFAREFGSLNVSNAAA 266

Query: 271 VALYITQ 277
           VALY  +
Sbjct: 267 VALYAVR 273


>gi|84687814|ref|ZP_01015684.1| tRNA/rRNA metyltransferase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664186|gb|EAQ10680.1| tRNA/rRNA metyltransferase [Rhodobacterales bacterium HTCC2654]
          Length = 267

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/254 (38%), Positives = 141/254 (55%), Gaps = 27/254 (10%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---------DWDANLP 88
           +KS+  +  E ++L+G+H V  AL NP R   +L+ TKNA  +L         + +   P
Sbjct: 12  EKSKRAAAAETVWLFGLHAVRDALVNPRRDKLRLVVTKNAADKLADAIATGGIEPEVADP 71

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVND 143
             FPV   P           +VHQG ALE  PL    L+ V         ++++LD V D
Sbjct: 72  RKFPVPLDP----------GSVHQGAALEVKPLDWGRLEEVCMGDGDRPPVVVLLDRVTD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAILRSA  F    +I TK +S  E+  LAK+ASGALE  PY+R++NL DA+  + 
Sbjct: 122 PHNVGAILRSAEVFGARAVIGTKHHSAPETGALAKTASGALERQPYLRVTNLADAMGTLK 181

Query: 204 SWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             G+  +GL+ ++   +      +    +AL++GAEG GLR KT+ET  ++  +      
Sbjct: 182 DMGYTVLGLAGEADDDIADALSPLSGHAVALVMGAEGPGLRQKTRETCDALVKIPFAAEF 241

Query: 261 KALNVSNAAAVALY 274
            +LNVSNAAAV+LY
Sbjct: 242 GSLNVSNAAAVSLY 255


>gi|254486509|ref|ZP_05099714.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           GAI101]
 gi|214043378|gb|EEB84016.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           GAI101]
          Length = 264

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 147/248 (59%), Gaps = 7/248 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ +     + ++L+G+H V  AL NP+R+  +L+ T NA  +L+         P + V 
Sbjct: 17  EQEKKVEANQTVWLFGLHAVRDALENPAREKLRLMVTPNAQIKLEAAIAQAGITP-EVVD 75

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154
           P+     + + +VHQG  LE  PL   +L  V     +  +++LD V DPHN+GAILRSA
Sbjct: 76  PRKFRPPLDQGSVHQGAVLEVKPLSWGSLAEVCIGAEAPRVLLLDRVTDPHNVGAILRSA 135

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I  + ++  E+  LAKSASGALE  PY+R+ NL D+++++ + G+  +GL  
Sbjct: 136 EVLGASAVIGMRHHAAPETGSLAKSASGALERQPYLRVRNLADSIKELQNMGYLVLGLDG 195

Query: 215 DSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +++  +E   E K D+ +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA+
Sbjct: 196 EAEITVEAALEGKRDRPVALVLGAEGPGLREKTKETVDVLVRIDAEGGFGSLNVSNAAAI 255

Query: 272 ALYITQNH 279
           ALY ++ H
Sbjct: 256 ALYASRPH 263


>gi|77462791|ref|YP_352295.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|77387209|gb|ABA78394.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
          Length = 261

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 8/237 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL  +A        + V 
Sbjct: 14  ERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIVD 72

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153
           P+     + + +VHQG ALE  PL   +L+ +  S     LL++LD V DPHN+GA+LRS
Sbjct: 73  PRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRS 132

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+  +GL 
Sbjct: 133 AEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGLE 192

Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++   L + ++      +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 193 GEASMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249


>gi|221638657|ref|YP_002524919.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides KD131]
 gi|221159438|gb|ACM00418.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides KD131]
          Length = 261

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 8/237 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL  +A        + V 
Sbjct: 14  ERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIVD 72

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153
           P+     + + +VHQG ALE  PL   +L+ +  S     LL++LD V DPHN+GA+LRS
Sbjct: 73  PRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRS 132

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+  +GL 
Sbjct: 133 AEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGLE 192

Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++   L + ++      +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 193 GEAAMTLAEGLQGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249


>gi|89055292|ref|YP_510743.1| RNA methyltransferase TrmH, group 3 [Jannaschia sp. CCS1]
 gi|88864841|gb|ABD55718.1| RNA methyltransferase TrmH group 3 [Jannaschia sp. CCS1]
          Length = 260

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 9/245 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ +  +  E ++L+G+H V  AL NP R++ +L+ + NA  +L  DA        +   
Sbjct: 12  ERGKRAAAAETIWLFGLHAVRDALANPDRQVLRLVVSLNAQTKLA-DAIAARGLEAEIAD 70

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILR 152
           P+     +   +VHQG A+E  PL      A+         ++++LD V+DPHN+GAILR
Sbjct: 71  PRKFPVPLDPGSVHQGAAVEVKPLDWGDWRALARGDGAERSVVVLLDRVSDPHNVGAILR 130

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I   R+S  E+  LAK+ASGALE +PY RI NL DA++ + + GF  +GL
Sbjct: 131 SAEVFGARAVIAPARHSAPETGALAKTASGALERMPYARIGNLGDAMEALKADGFWMVGL 190

Query: 213 SSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           + +   P++       +  IAL+LGAEG GLR +T+     +A +       +LNVSNAA
Sbjct: 191 AEEGAAPIDAVAARHTDSNIALVLGAEGPGLRERTRGLCDELAKIPFARDFGSLNVSNAA 250

Query: 270 AVALY 274
           AVALY
Sbjct: 251 AVALY 255


>gi|126461683|ref|YP_001042797.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103347|gb|ABN76025.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 261

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 139/237 (58%), Gaps = 8/237 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL  +A        + V 
Sbjct: 14  ERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIVD 72

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153
           P+     + + +VHQG ALE  PL   +L+ +  S     LL++LD V DPHN+GA+LRS
Sbjct: 73  PRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLRS 132

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+  +GL 
Sbjct: 133 AEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGLE 192

Query: 214 SDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++   L + ++      +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 193 GEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249


>gi|217976553|ref|YP_002360700.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
           silvestris BL2]
 gi|217501929|gb|ACK49338.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
           silvestris BL2]
          Length = 293

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 2/219 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG H V  AL    RK+F + AT+ A  +L  +         + V  + + + +G  A
Sbjct: 61  VLYGFHAVREALRAGKRKMFDIYATEAAAQKLAPEIAAAG-LTARLVAAEDLSRRLGPAA 119

Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           VHQG+ LE  P  +  + D    S +++VLD + DPHN+GAI R+A AF  D ++ T+R+
Sbjct: 120 VHQGVMLEARPFEALDISDIAPESGVVLVLDQITDPHNVGAIARTAAAFRVDALVMTERH 179

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +P  + VLAK+ASG LEH+P I + NL  AL+ +   G+  +GL S+ +  L     +  
Sbjct: 180 APELTGVLAKAASGGLEHVPIIHVVNLARALRALKDQGYLRVGLDSEGESTLTDAPLSRP 239

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +ALILG EGKGLR  T+E    +A L MPG IK+LNVSN
Sbjct: 240 LALILGGEGKGLRRLTRENCDLVARLDMPGPIKSLNVSN 278


>gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
 gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
          Length = 243

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/231 (40%), Positives = 132/231 (57%), Gaps = 6/231 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E L+LYG HTV AAL NP R   +LLAT+NAL    W         +  V P+ IDK + 
Sbjct: 10  EPLWLYGRHTVEAALGNPQRHQVKLLATRNALG---WLKERGRTITIDPVTPKDIDKALP 66

Query: 107 KEAVHQGLALETAPLLSPTL-DAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             AVHQGLA+   PL SP+L + + N +   L+VLD + DP NIGA+ R A AFS   +I
Sbjct: 67  PGAVHQGLAMLANPLPSPSLAEILENGETGPLLVLDQITDPQNIGALFRLAAAFSAKAVI 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
              R +P     LAK+A+GA+E +P+I + N++ AL+ +        GL+ +    L   
Sbjct: 127 AQDRRTPPLGGPLAKAATGAVECVPFIPVVNISRALEAIREKHIPIFGLAGEGALSLRDT 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 AL+LGAEGKGLRP  +     +  + +   I++LNV+ AAA++LY
Sbjct: 187 APTRTCALVLGAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLY 237


>gi|330991641|ref|ZP_08315592.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329761660|gb|EGG78153.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 263

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 135/235 (57%), Gaps = 5/235 (2%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ--TIDKIV 105
             +LYG H V AAL NP+RK+ QLL T  A   L   + L   FP++ V  +   +D + 
Sbjct: 30  TCWLYGQHAVQAALENPARKLRQLLVTAEAQETLA--SRLEGGFPIQPVRTERAALDTLC 87

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           G +AVHQG+AL    L  P LD V      ++VLD V DP NIGAILRSA AF    ++ 
Sbjct: 88  GPDAVHQGMALLVDVLAQPDLDTVLEQPGPVLVLDQVTDPRNIGAILRSAAAFGAVAVVM 147

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             R +P E+  LA++ASGALE +P IR+ NL+  L  + S G   +GL +          
Sbjct: 148 QDRNAPEETGTLARAASGALEIVPLIRVVNLSRVLDALKSRGLWVVGLDAGGGVLDGAAF 207

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              ++AL+LGAEG GLR  T+E    +A L M   +++LNVSNAAAVALY    H
Sbjct: 208 HQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSSRMESLNVSNAAAVALYEMFRH 262


>gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 246

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 11/237 (4%)

Query: 38  QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++   T + +  F   YG H V AAL NP R + ++  T+ AL  LD    LP   P+  
Sbjct: 2   KRGNRTGKAKGTFPRFYGRHAVIAALANPDRVVRKIWGTREALNALD----LPPVLPIVY 57

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL-LMVLDHVNDPHNIGAI 150
                + ++V  +A HQG+  E  PL    L   L+A ++ +  ++VLD V DPHN+GAI
Sbjct: 58  ADGADLGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEAGQDDKRPVLVLDQVTDPHNVGAI 117

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA AF    I+T  R++P ES VLA+SASGALE +P++R+ NL  AL ++   G+  I
Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRI 177

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GL  ++++ L + I   ++AL+LGAEG+GLR  +      +A L +   +++LNVSN
Sbjct: 178 GLDGEAEQTLGEAIGTSRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234


>gi|84500909|ref|ZP_00999144.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
           HTCC2597]
 gi|84390976|gb|EAQ03394.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
           HTCC2597]
          Length = 265

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/239 (37%), Positives = 140/239 (58%), Gaps = 11/239 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ R  +  E ++L+G+H V  AL NP+R+  +L+ TKNA  +L  DA        +   
Sbjct: 13  ERGRKAAAEETVWLFGLHAVRDALMNPAREKLRLIVTKNAADKLA-DAIAAGGIEPEMAD 71

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAIL 151
           P+     +  ++VHQG ALE  PL   ++      D VR  ++++ LD V DPHN+GAIL
Sbjct: 72  PRRFTAPLDPQSVHQGAALEVRPLDWGSVAERCLGDGVRPPRVVL-LDRVTDPHNVGAIL 130

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I  + ++  E+  LAK+ASGALE  PY+R+ NL D + ++ S G+  +G
Sbjct: 131 RSAEVFGALAVIGMRHHAAPETGALAKTASGALERQPYLRVRNLADTIVELQSMGYLVLG 190

Query: 212 LSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L  ++   LE   + +++  +AL+LGAEG GLRPKT++T   +  +   G   +LNVSN
Sbjct: 191 LDGEAGTELEDAVEGLRDRPVALVLGAEGPGLRPKTRDTCDRLVRIAFAGSFGSLNVSN 249


>gi|84516419|ref|ZP_01003778.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
           vestfoldensis SKA53]
 gi|84509455|gb|EAQ05913.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
           vestfoldensis SKA53]
          Length = 258

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 143/238 (60%), Gaps = 9/238 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++  +  E ++L+G+H V  AL NP+R+  +L+ T+NAL RL  DA        +   
Sbjct: 11  EQAKRVASQETVWLFGLHAVRDALENPAREKLRLIVTRNALERLG-DAVATGGIEPEISD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQL---LMVLDHVNDPHNIGAILR 152
           P+     +  ++VHQG ALE  PL   +L   A+R   +   +++LD V DPHN+GAILR
Sbjct: 70  PRKFAAPLDPQSVHQGAALEVKPLDWGSLQDVALREGPMPPRIVLLDRVTDPHNVGAILR 129

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    ++  +R++  E+  LAK+ASGALE  PY+R+ NL D++ ++   G+  +GL
Sbjct: 130 SAEVFGARAVVAMQRHAAPETGALAKTASGALERQPYLRVRNLADSIVELQQMGYLVLGL 189

Query: 213 SSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +++  +E+  E K D+ +AL++GAEG GLR KT+ET   +  +       +LNVSN
Sbjct: 190 DGEAETTIEEAVEGKRDRAVALVMGAEGPGLRDKTRETCDILVRIDASADFGSLNVSN 247


>gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 249

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 140/237 (59%), Gaps = 11/237 (4%)

Query: 38  QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           +K+  +++P+  F   YG H V+AAL NP+R + ++  T+ AL  LD    LP   P+  
Sbjct: 2   KKTHRSAKPKGAFPRFYGRHAVTAALANPNRTVRKIWGTREALGALD----LPPVLPIVY 57

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAI 150
                + ++V  +A HQG+  E  PL    L  V      + + ++VLD V DPHN+GAI
Sbjct: 58  SDVADMGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEEGQDDKRPILVLDQVTDPHNVGAI 117

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA AF    I+T  R++P ES VLA++ASGALE +P++R+ NL  AL ++   G+  I
Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARAASGALEIVPWVRVVNLARALDEIAEAGYWRI 177

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GL  ++   + + I   ++AL+LGAEG+GLR  +      +A L +   +++LNVSN
Sbjct: 178 GLDGEADTTIGEAIGQSRVALVLGAEGEGLRHNSIAHCDIIAKLPISPRMESLNVSN 234


>gi|307294636|ref|ZP_07574478.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
           chlorophenolicum L-1]
 gi|306879110|gb|EFN10328.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
           chlorophenolicum L-1]
          Length = 246

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 141/237 (59%), Gaps = 11/237 (4%)

Query: 38  QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++   T + +  F   YG H V AAL NP R + ++  T++AL  LD    LP   P+  
Sbjct: 2   KRGNRTGKAKGQFPRFYGRHAVIAALANPDRVVRKIWGTRDALNALD----LPPVLPIVY 57

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL-LMVLDHVNDPHNIGAI 150
                + ++V  +A HQG+  E  PL    L   L+A ++ +  ++VLD V DPHN+GAI
Sbjct: 58  SDVADLGRMVPSDAPHQGIVAEVEPLDDVWLGNVLEAGQDDKRPVLVLDQVTDPHNVGAI 117

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA AF    I+T  R++P ES VLA+SASGALE +P++R+ NL  AL ++   G+  I
Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRI 177

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GL  ++++ L + I   ++AL+LGAEG+GLR  +      +A L +   +++LNVSN
Sbjct: 178 GLDGEAEQTLGEAIGTSRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234


>gi|209544876|ref|YP_002277105.1| TrmH family RNA methyltransferase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209532553|gb|ACI52490.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 321

 Score =  161 bits (408), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 96/226 (42%), Positives = 133/226 (58%), Gaps = 1/226 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +LYG+H   AAL NP R+I Q+LAT++  A L    N P P          ++ + G++A
Sbjct: 88  WLYGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGRDA 147

Query: 110 VHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           VHQG+A+    L S  + D       L++LD V DP N+GAILRSA AF    ++  +R 
Sbjct: 148 VHQGIAVLADALPSLAIEDMTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVMERN 207

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +P E+  LAK+ASGALE +P +R+ NL   L  + S  F  +GL +             +
Sbjct: 208 APDETGALAKAASGALEIVPLVRVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQRR 267

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +AL+LGAEG GLR  T+E    +A L MPG +++LNVSNAAAVALY
Sbjct: 268 VALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALY 313


>gi|146278291|ref|YP_001168450.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556532|gb|ABP71145.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 261

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/237 (37%), Positives = 140/237 (59%), Gaps = 8/237 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           +++R T+  E ++L+G+H V  AL NPSR+  +L+ TKNA  RL  +A        + V 
Sbjct: 14  ERARRTTAQETVWLFGIHAVRDALINPSREKLRLVLTKNAADRLG-EAVAAGGIEPEIVD 72

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRS 153
           P+     + + +VHQG ALE  PL   +L+ +  S     L+++LD V DPHN+GA+LRS
Sbjct: 73  PRKFSAPIDEGSVHQGAALEVRPLDWGSLEDLAASGEGEPLVVLLDRVTDPHNVGAVLRS 132

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    ++   R+S  E+  LAK+ASGALE  PY+R+ NL + ++++ + G+  +GL 
Sbjct: 133 AEVFGARAVVAPHRHSAPETGALAKTASGALERQPYLRVGNLAETMERLKAIGYMLLGLD 192

Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           S++   L + +       + L+LGAEG GLR KT++T   +  +   G   +LNVSN
Sbjct: 193 SEAPATLAEGLAIAGKRPVGLVLGAEGPGLRDKTRDTCDVLVRIPAAGGFGSLNVSN 249


>gi|103486336|ref|YP_615897.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
           RB2256]
 gi|98976413|gb|ABF52564.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
           RB2256]
          Length = 272

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/252 (37%), Positives = 145/252 (57%), Gaps = 19/252 (7%)

Query: 30  YKKMQSFNQKSRH------TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           + K  +  Q SRH        + + +  +G H V AAL NP R + ++  T+ AL +LD 
Sbjct: 12  HGKGAAMRQFSRHRRPSGGNQRGQTVRFWGRHAVLAALANPDRAVRRIWGTREALGQLD- 70

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--------LSPTLDAVRNSQLL 135
              LP   P+       + ++V ++A HQGL +E  PL        L   +DA  + + L
Sbjct: 71  ---LPPVIPISYADVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDA-ESRRPL 126

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD V DPHNIGA+LRSA AF    I+T  R+SP ES V+A+SASGALE +P++R+ NL
Sbjct: 127 VILDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGALETVPWVRVVNL 186

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           + AL+++    +  IGL  D++  L + +   K+AL+LG+EG G+R    E    +A L 
Sbjct: 187 SRALEEIAEAQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCDVLARLP 246

Query: 256 MPGIIKALNVSN 267
           +   +++LN+SN
Sbjct: 247 ISPRMESLNISN 258


>gi|159045111|ref|YP_001533905.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157912871|gb|ABV94304.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 263

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 138/242 (57%), Gaps = 10/242 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + ++L+G+H V  AL NP+R   +L+ T+NA  +L          P +   P+     + 
Sbjct: 22  QTVWLFGLHAVRDALENPARTKLRLVVTRNAADKLAEAIAGAGIAP-EIADPRRFPAPLD 80

Query: 107 KEAVHQGLALETAPL-LSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCD 160
             +VHQG ALE  PL   P  + V         L+++LD V DPHN+GAILRSA  F   
Sbjct: 81  PGSVHQGAALEVKPLAWGPLAETVLTGPADRPPLVVLLDRVTDPHNVGAILRSAEVFGAA 140

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I+T R +  E+  LAK+ASGALE  PY+R+ NL + ++++ + GF  +GL   ++  +
Sbjct: 141 AVISTARSAAPETGALAKTASGALERQPYLRVRNLAETMEELRAMGFVLLGLDGTAEDTI 200

Query: 221 E---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +++ +  IAL+LGAEG GLR KT+ET   +  +       +LNVSNAAAVALY  +
Sbjct: 201 GTALRDLTDRPIALVLGAEGPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALYACR 260

Query: 278 NH 279
             
Sbjct: 261 GE 262


>gi|119386533|ref|YP_917588.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
 gi|119377128|gb|ABL71892.1| RNA methyltransferase, TrmH family, group 3 [Paracoccus
           denitrificans PD1222]
          Length = 265

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/230 (41%), Positives = 133/230 (57%), Gaps = 12/230 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E ++L+G+H V  AL NP R+  +L+ T+NAL RL     LP     + V  +T D+ V 
Sbjct: 27  ETVWLFGLHAVRDALANPRREKLRLVVTRNALDRL---GPLPPDLAHEIVDARTFDRAVP 83

Query: 107 --KEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCD 160
              E+VHQG ALE  PL   +L  +  S     LL+ LD V DPHN+GAILRSA  F   
Sbjct: 84  LPAESVHQGAALEVRPLKWGSLVDLALSGPGRPLLVALDRVTDPHNVGAILRSAEVFGAR 143

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I   R+S  E+  LAK+ASGALE  PY+R++NL D L ++ S G+  +GL     + L
Sbjct: 144 AVIAPARHSAPETGALAKTASGALERQPYLRVTNLADTLIELQSMGYTVLGLDGTGDELL 203

Query: 221 EQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            + +++     I L+LGAEG GLR +T+ET   +  +       +LNVSN
Sbjct: 204 PEALRDLSGRAICLVLGAEGPGLRERTRETCDRILRIPFAADFGSLNVSN 253


>gi|85707218|ref|ZP_01038304.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
 gi|85668272|gb|EAQ23147.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
          Length = 258

 Score =  159 bits (401), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 141/238 (59%), Gaps = 9/238 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++  S  E ++L+G+H V  AL NPSR+  +L+ TKNA  +L+         P + V 
Sbjct: 11  EQAKRASASETVWLFGLHAVRDALENPSREKLRLIVTKNAADKLEAAIAASGITP-EEVD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPL-LSP----TLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           P+  +  +   +VHQG ALE  PL   P     L   R +  +++LD V DPHN+GAILR
Sbjct: 70  PRKFNAPLDPGSVHQGAALEVKPLDWGPIGEVCLGDGRTAPRVVLLDRVTDPHNVGAILR 129

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I  + ++  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + G+  +GL
Sbjct: 130 SAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYLVLGL 189

Query: 213 SSDSKKPLE--QEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + +++  +E   E + D+ +AL+LGAEG GLR +T+E   ++  +       +LNVSN
Sbjct: 190 AGEAEMTIEAAMEGRRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247


>gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040]
 gi|99038169|gb|ABF64781.1| RNA methyltransferase TrmH group 3 [Ruegeria sp. TM1040]
          Length = 262

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/234 (39%), Positives = 139/234 (59%), Gaps = 7/234 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E ++L+G+H V  AL NP R+  +L+ T NA  +L+ DA        + V P+     + 
Sbjct: 25  ETVWLFGLHAVRDALLNPKREKLRLVVTLNAQNKLE-DAIATSGITPEVVDPRKFSVPID 83

Query: 107 KEAVHQGLALETAPLLSPTL-DAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             +VHQG ALE  PL    L D    +++  +++LD V DPHN+GAILRSA       +I
Sbjct: 84  PGSVHQGAALEVKPLNWGGLEDNCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGASAVI 143

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+ +S  E+  LAK+ASGALE  PY+R+ NL+D +  +   G+  +GL  ++++ +E+ 
Sbjct: 144 GTRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEA 203

Query: 224 IKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + IAL+LGAEG GLR KT+ET   +  +       +LNVSNAAA++LY
Sbjct: 204 VAGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLY 257


>gi|149201824|ref|ZP_01878798.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           TM1035]
 gi|149144872|gb|EDM32901.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           TM1035]
          Length = 258

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 141/238 (59%), Gaps = 9/238 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++  +  E ++L+G+H V  AL NP+R+  +L+ TKNA  +L+         P + V 
Sbjct: 11  EQAKRAAASETVWLFGLHAVRDALENPAREKLRLIVTKNAADKLEAAIAASGITP-EEVD 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPL-LSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152
           P+  +  +   +VHQG ALE  PL   P  +      R +  +++LD V DPHN+GAILR
Sbjct: 70  PRKFNAPLDPGSVHQGAALEVKPLDWGPMAEVCLGDGRTAPRVVLLDRVTDPHNVGAILR 129

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I  + ++  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + G+  +GL
Sbjct: 130 SAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYTVLGL 189

Query: 213 SSDSKKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + +++  +E   E K D+ +AL+LGAEG GLR +T+E   ++  +       +LNVSN
Sbjct: 190 AGEAELTIEAALEGKRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247


>gi|259416208|ref|ZP_05740128.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
           TrichCH4B]
 gi|259347647|gb|EEW59424.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
           TrichCH4B]
          Length = 262

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 7/232 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++L+G+H V  AL NP R+  +L+ T NA  +L+ DA        + V P+     +   
Sbjct: 27  VWLFGLHAVRDALLNPKREKLRLVVTLNAHNKLE-DAITTSGITPEVVDPRKFSVPIDPG 85

Query: 109 AVHQGLALETAPLLSPTLDA-VRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           +VHQG ALE  PL    LD     +++  +++LD V DPHN+GAILRSA       +I T
Sbjct: 86  SVHQGAALEVKPLNWGGLDENCIGAEIPRVILLDRVTDPHNVGAILRSAEVLGASAVIGT 145

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           + +S  E+  LAK+ASGALE  PY+R+ NL+D +  +   G+  +GL  ++++ +E+ + 
Sbjct: 146 RHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEAVA 205

Query: 226 N---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               + IAL+LGAEG GLR KT+ET   +  +       +LNVSNAAA++LY
Sbjct: 206 GRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLY 257


>gi|162149380|ref|YP_001603841.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787957|emb|CAP57557.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 233

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 130/225 (57%), Gaps = 1/225 (0%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YG+H   AAL NP R+I Q+LAT++  A L    N P P          ++ + G++AV
Sbjct: 1   MYGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGRDAV 60

Query: 111 HQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           HQG+A+    L S  + D       L++LD V DP N+GAILRSA AF    ++  +R +
Sbjct: 61  HQGIAVLADALPSLAIEDVTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVMERNA 120

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P E+  LAK+ASGALE +P   + NL   L  + S  F  +GL +             ++
Sbjct: 121 PDETGALAKAASGALEIVPLGAVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQRRV 180

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL+LGAEG GLR  T+E    +A L MPG +++LNVSNAAAVALY
Sbjct: 181 ALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALY 225


>gi|83594035|ref|YP_427787.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
           11170]
 gi|83576949|gb|ABC23500.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
           11170]
          Length = 348

 Score =  155 bits (392), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/233 (40%), Positives = 131/233 (56%), Gaps = 14/233 (6%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP---QTIDKI 104
            L+L+G H V AAL NP RK  +LLA   A            P    TV P   + I+ +
Sbjct: 115 GLWLFGRHAVEAALQNPERKALRLLALAGAAEG--------LPKGGPTVEPADREAIEAV 166

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           V   AVHQGLAL+ APL  PT++ +       ++ +LD V+DPHNIGA+LRSA AF    
Sbjct: 167 VPPGAVHQGLALKVAPLSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLRSAAAFGIRA 226

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++   R+SP E+  LAKSASG LE +P +R  NL+ AL      GF   GL + ++  L 
Sbjct: 227 VVVQDRHSPEETGTLAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGLDASAETTLA 286

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    ++  ++LG+EG GLR   ++    +  L M   +++LNVSNAAAV  Y
Sbjct: 287 EAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVTFY 339


>gi|302382701|ref|YP_003818524.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193329|gb|ADL00901.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 304

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 147/228 (64%), Gaps = 4/228 (1%)

Query: 50  FLYGVHTVSAALNNPSRK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           FL+G H V AAL NP+RK + +LLAT++  A ++ +    +   ++ +  QT+++++   
Sbjct: 71  FLWGRHPVLAALANPARKGMGRLLATEDRAAEIEREGTA-NGHKIEVMDAQTLERMLPAG 129

Query: 109 AVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           AVHQG+A +  PL   +L+ + +    ++++LD + DP N+GAI RSA+AF   GI+   
Sbjct: 130 AVHQGMAFKVQPLEGVSLEDLGDPAEGIIVMLDQLTDPQNVGAIFRSALAFGARGIVVQD 189

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R+SP  +  LAK+A+GA E +P  R++NL+ AL+++   G++ +GL  DS++ LE  + +
Sbjct: 190 RHSPVLAGALAKAAAGATERLPCARVTNLSRALERLADLGWRAVGLDGDSEELLENALDH 249

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               L++G+EG G+R    E    +A + MPG  ++LNVSNAAAVALY
Sbjct: 250 RPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSNAAAVALY 297


>gi|58584746|ref|YP_198319.1| rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419062|gb|AAW71077.1| rRNA methylases [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 258

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 140/238 (58%), Gaps = 11/238 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDK 103
           +N +LYG HT   AL N +R   +LL T+N+    + +           V+ V  + + +
Sbjct: 8   KNFWLYGKHTCMLALKNKNRLCIELLVTENSYREYEKEIRQCVDSKGIKVQLVKNKILSE 67

Query: 104 IVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           ++ K A HQG+AL+ AP+L         ++  +S  +++LD V D HNIG+ILR++  F+
Sbjct: 68  VLSKSANHQGIALKVAPILHSLSIKEIAESSSDSSTIVILDQVTDTHNIGSILRTSACFN 127

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++    +SPSE+A +AK+ASG L+ +P I ++N+   ++ +   G+   G  S++K+
Sbjct: 128 VDALVLPYNHSPSENASIAKAASGTLDIVPLIHVTNVVKTMEYLKKVGYWCYGFDSNAKE 187

Query: 219 PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ EIK+   KI +I G+EGKG+R   +E    +  + M  +I +LNVSNAAA+ LY
Sbjct: 188 NID-EIKSFGKKIVIIFGSEGKGMRRLVKENCDYLLKIPMSNVIDSLNVSNAAAIGLY 244


>gi|260425256|ref|ZP_05779236.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
 gi|260423196|gb|EEX16446.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
          Length = 278

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 134/238 (56%), Gaps = 9/238 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++S+     E ++L+G+H V  AL NP R+  +L+ T NA A+L+ DA        +   
Sbjct: 31  EQSKKARAAETVWLFGLHAVRDALMNPRREKLRLIVTLNAQAKLE-DAIAAGGIEPEIHD 89

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILR 152
           P+     +  ++VHQG ALE  PL    L+ V          L++LD V DPHN+GAILR
Sbjct: 90  PRKFGAPLDPQSVHQGAALEVKPLDWGRLEDVAMGDGETPPRLVLLDRVTDPHNVGAILR 149

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I T+ ++  E+  LAK+ASGALE  PY+R  NL D ++ +   G+  +GL
Sbjct: 150 SAEVFGAQAVIGTQHHAAPETGALAKTASGALERQPYLRERNLADTIRALQEMGYLVLGL 209

Query: 213 SSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             ++   +E   + +++  +AL+LGAEG GLR KT+ET   +  +       +LNVSN
Sbjct: 210 DGEADTTIETALEGMRDRAVALVLGAEGPGLREKTKETVDRLVRIEFARSFGSLNVSN 267


>gi|294678305|ref|YP_003578920.1| TrmH family RNA methyltransferase [Rhodobacter capsulatus SB 1003]
 gi|294477125|gb|ADE86513.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter capsulatus
           SB 1003]
          Length = 264

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/229 (39%), Positives = 133/229 (58%), Gaps = 10/229 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-- 105
            L+L+G+H V  AL NP+R   +L+ TKNA  +L  +A        + V P+  D  V  
Sbjct: 21  TLWLFGLHAVRDALMNPARVKLRLVLTKNAADKLA-EAIAAGGLAPEIVDPRKFDAHVPL 79

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           G + VHQG ALE  PL    L  V  +     L+++LD V DPHN+GAILRSA  F    
Sbjct: 80  GPDQVHQGAALEVKPLDWGKLADVALTGAGLPLVVMLDRVTDPHNVGAILRSAEVFGARA 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++   R+S  E+  LAK+ASGALE  PY+R++NL++A+  +   G+  IGL+ +++  L 
Sbjct: 140 VVAPARHSAPETGALAKTASGALERQPYLRVTNLSEAMGALRDMGYVLIGLAGEAEMTLA 199

Query: 222 Q---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +   E+    +A++LGAEG GLR KT+ T   +  +   G   +LNVSN
Sbjct: 200 EGLAEVGTRPVAIVLGAEGPGLREKTRATCDHLVRIPFAGAFGSLNVSN 248


>gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex]
          Length = 250

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 95/231 (41%), Positives = 138/231 (59%), Gaps = 7/231 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGK 107
            +L+G H+V AAL N  R+  QLL T++AL  ++ + A  P   P K +P   +++++  
Sbjct: 18  FWLWGTHSVIAALENTQRECHQLLCTRDALKDVEPFLAKRPKLSP-KILPRDELNRLL-P 75

Query: 108 EAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + VHQG+AL+ +PL    L+  L     ++ L++LD + DP N+GAILRSA AF  DG++
Sbjct: 76  QTVHQGVALQVSPLPELFLNTFLARSPAAKRLVILDQITDPQNVGAILRSACAFGFDGVL 135

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+R+SP    V+ KSASGALE IP +  +N+   L+ + + GF   GLS +   PL Q 
Sbjct: 136 MTERHSPPLEGVVGKSASGALEKIPLLMTANVAQGLRLLKTEGFWCWGLSEEGTLPLSQL 195

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +AL+LGAEGKGLRP T +    +  L        LNV+ AAAVA Y
Sbjct: 196 PCEGSLALVLGAEGKGLRPLTAQLCDGLVRLPTSPDFPTLNVAAAAAVAFY 246


>gi|51473842|ref|YP_067599.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
 gi|51460154|gb|AAU04117.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
          Length = 248

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 141/246 (57%), Gaps = 8/246 (3%)

Query: 33  MQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           M  FN+ +++  +   + ++YG H V +A+NNP R+I  +L T+      D +  L    
Sbjct: 1   MMVFNKMQNKQLNYQNSYYMYGKHPVFSAINNPKRQIENILCTREIF---DINKKLIGTR 57

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIG 148
           P + V    I K++ K   HQG+A +  P+ S  LD +   N Q  +++LD + D  NIG
Sbjct: 58  PYEIVNNYIISKLL-KHQTHQGIAAKVRPIFSYNLDDIDINNPQCKIVILDQITDTQNIG 116

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF 
Sbjct: 117 AIIRSAAAFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFW 176

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            IG++  + +    +  +DKIAL+ GAE KG+R   +ET   +A + +   +++LNV+NA
Sbjct: 177 IIGVTGYANEYFTDKFISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANA 236

Query: 269 AAVALY 274
           A++  +
Sbjct: 237 ASIIFH 242


>gi|99034724|ref|ZP_01314656.1| hypothetical protein Wendoof_01000527 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 254

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 139/239 (58%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTID 102
           EN +LYG HT  +AL N +R+  +LL T+N     + +    AN      V+ V  + ++
Sbjct: 8   ENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYAN-SKGIKVRLVENKILN 66

Query: 103 KIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            ++ K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR++  F
Sbjct: 67  DVLPKGANHQGIALNVAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILRTSACF 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + D ++    +SPSE+A +AK+ASGAL+ IP I ++N+   +Q +   G+   G   ++K
Sbjct: 127 NVDALVLPHNHSPSENASIAKAASGALDIIPLIYVTNIVKTMQYLKKVGYWCYGFDCNAK 186

Query: 218 KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + ++ EIK+   K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+ LY
Sbjct: 187 ENID-EIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 244


>gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
 gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
          Length = 289

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/260 (38%), Positives = 140/260 (53%), Gaps = 14/260 (5%)

Query: 29  DYKKMQSFNQKSRHT--SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDA 85
           D +  +SF+  +R T  +  +   +YG H V AAL+N  R +  +  T  A  A   + +
Sbjct: 13  DRQTERSFDGSTRSTEPAVDDPTLVYGRHAVRAALHNDRRHVVAIRHTVGAGDAMAVFLS 72

Query: 86  NLPHPFPVKTVPPQTIDKI-----VGKEAVHQGLALETAPLLSPTLDAV------RNSQL 134
            LP P       PQ +D       +   AVHQGL L+  PL  P L  +      R   +
Sbjct: 73  ELPEPRRRSLPAPQPVDATELDASLPDGAVHQGLVLKVTPLPDPNLSDLIVAWEGRTDIV 132

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VLD V DPHN+GA+LRSA AF    ++   R+ P  + VLAK ASGAL+ +P +R+ N
Sbjct: 133 LVVLDQVTDPHNVGAVLRSAAAFGASAVVLQDRHGPPVTGVLAKIASGALDVVPLVRVVN 192

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L  AL+ +   GF   GL+ D    L +     + A++LGAEG GLR  T+ET  ++A L
Sbjct: 193 LARALRDLQENGFWCTGLAEDGSVDLGRVDLGGRCAIVLGAEGAGLRRLTRETCDALARL 252

Query: 255 HMPGIIKALNVSNAAAVALY 274
                I +LNVS AAAVALY
Sbjct: 253 PTCPPIGSLNVSAAAAVALY 272


>gi|225630621|ref|YP_002727412.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
 gi|225592602|gb|ACN95621.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
          Length = 254

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 139/241 (57%), Gaps = 17/241 (7%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVPPQT 100
           EN +LYG HT  +AL N +R+  +LLAT+N         R   D+       V+ V  + 
Sbjct: 8   ENFWLYGKHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDS---KGIKVRLVESKI 64

Query: 101 IDKIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++ ++ K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR++ 
Sbjct: 65  LNDVLPKGANHQGIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSA 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F+ D ++    +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G   +
Sbjct: 125 CFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCN 184

Query: 216 SKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +K+ ++ EIK+   K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+ L
Sbjct: 185 TKENID-EIKSFEKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGL 243

Query: 274 Y 274
           Y
Sbjct: 244 Y 244


>gi|42520767|ref|NP_966682.1| RNA methyltransferase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410507|gb|AAS14616.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 254

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 139/239 (58%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTID 102
           EN +LYG HT  +AL N +R+  +LL T+N     + +    AN      V+ V  + ++
Sbjct: 8   ENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYAN-SKGIKVRLVENKILN 66

Query: 103 KIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            ++ K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR++  F
Sbjct: 67  DVLPKGANHQGIALNAAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILRTSACF 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + D ++    +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G   ++K
Sbjct: 127 NVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNAK 186

Query: 218 KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + ++ EIK+   K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+ LY
Sbjct: 187 ENID-EIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 244


>gi|91205880|ref|YP_538235.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157826761|ref|YP_001495825.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
 gi|91069424|gb|ABE05146.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157802065|gb|ABV78788.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
          Length = 241

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 137/235 (58%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGK 107
           ++YG H V +ALNNP R+I  +L T     ++ +DAN  L    P K V    + K++  
Sbjct: 13  YIYGKHPVFSALNNPKRQIEDILCT-----QMIFDANKKLISSKPYKIVNNDVLSKLLEN 67

Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +  HQG+A +  P+ S  ++ +  +N +  + +LD + DP NIGAI+RSA AF+ D II 
Sbjct: 68  QT-HQGIAAKVKPIFSHNIEDINIKNPKCKIAILDQITDPQNIGAIIRSAAAFNIDAIIL 126

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
               SP+E+  +AK+A G LE I  I+++NL   +  +   GF  IGL+ ++      ++
Sbjct: 127 PLDNSPNENGTIAKAACGTLELIKIIKVTNLNSCINYLKKHGFWVIGLTGEANDYFTDKL 186

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +DKIALI G+E KG+R   QE    +A + +   +++LNVSNAA++  +   +H
Sbjct: 187 ISDKIALIFGSEDKGMRRLVQENCDYLAKIPISDKVESLNVSNAASIIFHSLWDH 241


>gi|294085941|ref|YP_003552701.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665516|gb|ADE40617.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 312

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/235 (38%), Positives = 133/235 (56%), Gaps = 22/235 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WD-------ANLPHPFPVKTVPPQT 100
           FL+G H V+AAL NP R+I  L  T ++    D  W        A LP   P++    + 
Sbjct: 70  FLWGRHAVAAALVNPDRRIAALYVTDDSRDSFDEMWQTLAMDRQAELPDARPIER---RR 126

Query: 101 IDKIVGKEA---VHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151
           +D I G ++   VHQG+A    PL +P LD      A +  +++M LD ++DP N+GAIL
Sbjct: 127 LDGIGGHDSEKVVHQGMAAAVWPLDAPHLDDFIADIADKPVRIIM-LDQISDPRNVGAIL 185

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA AF CD IITT+R++P E+  LA++A+GALEHIP IR+ NL  A++ +        G
Sbjct: 186 RSARAFGCDAIITTQRHAPEENGALARTATGALEHIPIIRVVNLARAVESLQDHDITVAG 245

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           L+ D    +       ++A++LGAEG GLR  ++E    +  + +     +LNVS
Sbjct: 246 LAGDGTMDVGALADFPRLAIMLGAEGPGLRRLSREHCDHLVRIDIAPDADSLNVS 300


>gi|114766067|ref|ZP_01445077.1| RNA methyltransferase, TrmH family, group 3 [Pelagibaca bermudensis
           HTCC2601]
 gi|114541702|gb|EAU44742.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           HTCC2601]
          Length = 259

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 135/238 (56%), Gaps = 9/238 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++++     E ++L+G+H V  AL NP R+  +L+ T NA A+L  DA        +   
Sbjct: 12  EQAKKARSAETVWLFGLHAVRDALLNPRREKLRLILTPNAEAKLA-DAVAEAGIAPEIHD 70

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILR 152
           P+     +  ++VHQG ALE  PL    LD V          L++LD V+DPHN+GAILR
Sbjct: 71  PRKFGAPLDPQSVHQGAALEVKPLDWGRLDDVAVRDDDRPARLVLLDRVSDPHNVGAILR 130

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I  + +S  E+  LAK+ASGALE  PY+R  NL D ++ + + G+  +GL
Sbjct: 131 SAEVFGAQAVIGVQHHSAPETGALAKTASGALERQPYLRERNLADTIRTLQTMGYLVLGL 190

Query: 213 SSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +++  +EQ    +++  +AL+LGAEG GLR KT+ T   +  +   G   +LNVSN
Sbjct: 191 DGEAEGTIEQALEGLRDRPVALVLGAEGPGLREKTKTTVDKLVRIDFAGGFGSLNVSN 248


>gi|15604508|ref|NP_221026.1| hypothetical protein RP664 [Rickettsia prowazekii str. Madrid E]
 gi|3861202|emb|CAA15102.1| unknown [Rickettsia prowazekii]
          Length = 248

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 142/252 (56%), Gaps = 8/252 (3%)

Query: 33  MQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           M  FN+ +++      + ++YG H V +A+NNP R+I  +L TK      D +  L    
Sbjct: 1   MTVFNKMQNKQLDYKNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTR 57

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148
             + V    + K++ K   HQG+A +  P+ S  LD +   +    +++LD + D  NIG
Sbjct: 58  SYEIVNNYILSKLL-KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIG 116

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF 
Sbjct: 117 AIIRSAAAFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFW 176

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            IG++  +K+    ++ +DKIAL+ GAE KG+R   +ET   +A + +   +++LNV+NA
Sbjct: 177 IIGVTGYAKEYFTDKLISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANA 236

Query: 269 AAVALYITQNHF 280
           A++  +    +F
Sbjct: 237 ASIIFHSLHKYF 248


>gi|254796645|ref|YP_003081481.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
           str. Illinois]
 gi|254589882|gb|ACT69244.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
           str. Illinois]
          Length = 243

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 12/239 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101
           Q E + ++G H   AA+ NP R I  +   +   A    L   + LP+   +       I
Sbjct: 2   QQEKIVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPN---ISFCENTQI 58

Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAF 157
            KI G++A+HQG+A+ T  L  P L D ++N+    L+M+LD + DP N+G ILRS+ AF
Sbjct: 59  AKICGRDALHQGIAVITEKLSQPELRDVLKNTNKRSLVMILDSITDPFNVGNILRSSKAF 118

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D I+  +R+SPSE++V+AK+ASGALE IP   I+NLT+A++ +   G+    +   + 
Sbjct: 119 GVDAIVVKQRHSPSETSVIAKTASGALESIPVCTIANLTNAIKILQENGYFCYAMDGGAS 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLR--PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L +    +K+A +LG+EGKG+    KT+   T    ++      ++NVSNAAA+A++
Sbjct: 179 SKLTEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYADKNFDSINVSNAAAIAMF 237


>gi|190571500|ref|YP_001975858.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|213018903|ref|ZP_03334711.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|190357772|emb|CAQ55226.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|212995854|gb|EEB56494.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 255

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 140/240 (58%), Gaps = 15/240 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK--- 103
           EN ++YG HT  +AL N +R+  +LL T+N     +++  +      K + P+ ++    
Sbjct: 8   ENCWIYGKHTCISALRNKNRRCIELLVTENFYR--EFEKEIKQCADSKGIKPRLVENKMF 65

Query: 104 --IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             ++ K   HQG+AL+ AP+     +    +   +S  +++LD + D HNIG+ILR++  
Sbjct: 66  NDVLPKGVNHQGIALKVAPIFHSLNIEEIAEGSGDSSTIVILDQITDTHNIGSILRTSAC 125

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F+ D ++    +SPSE+A +AK+ASGAL+ +P I ++N+   ++ +   G+   G   ++
Sbjct: 126 FNIDALVLPHHHSPSENASIAKAASGALDIVPLIYVTNIVKTMESLKKIGYWCYGFDCNA 185

Query: 217 KKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K+ ++ EIKN   K  +I G+E KG+R   +E+   +  + M  +I +LNVSNAAA+ LY
Sbjct: 186 KENID-EIKNFGQKRVIIFGSEEKGMRRLVKESCDYLLKIPMSNVIDSLNVSNAAAIGLY 244


>gi|218463384|ref|ZP_03503475.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli Kim 5]
          Length = 179

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 16/166 (9%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +   +        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPLPQKRKRGPEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L+NP RK  +L  T+NALARL+ D   L   F +  V P  IDK++G EA+HQG+ LET 
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDVETLGIAFEI--VSPHEIDKVLGPEAIHQGVMLETL 133

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT
Sbjct: 134 PLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITT 179


>gi|292572291|gb|ADE30206.1| tRNA/rRNA methyltransferase [Rickettsia prowazekii Rp22]
          Length = 242

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 134/234 (57%), Gaps = 7/234 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG H V +A+NNP R+I  +L TK      D +  L      + V    + K++ K  
Sbjct: 13  YMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTRSYEIVNNYILSKLL-KHQ 68

Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            HQG+A +  P+ S  LD +   +    +++LD + D  NIGAI+RSA AF  + II  +
Sbjct: 69  THQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIGAIIRSAAAFYINAIILPQ 128

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IG++  +K+    ++ +
Sbjct: 129 DNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGYAKEYFTDKLIS 188

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           DKIAL+ GAE KG+R   +ET   +A + +   +++LNV+NAA++  +    +F
Sbjct: 189 DKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHSLHKYF 242


>gi|88608166|ref|YP_506155.1| RNA methyltransferase [Neorickettsia sennetsu str. Miyayama]
 gi|88600335|gb|ABD45803.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia sennetsu
           str. Miyayama]
          Length = 243

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 136/239 (56%), Gaps = 12/239 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTI 101
           Q E + ++G H   AA+ NP R I  +   +   A    L   + LP+   +       I
Sbjct: 2   QQEKVVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPN---ISFCENTQI 58

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAVAF 157
            KI G++A+HQG+A+ T  L  P L  V  S     L+++LD + DP NIG ILRS+ AF
Sbjct: 59  AKICGRDALHQGIAVVTEKLSQPELRDVLKSTSKRSLVIILDSITDPFNIGNILRSSKAF 118

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++  +R+SPSE++V+AK+ASGALE IP   I+NLT+A++ +   G+    L   ++
Sbjct: 119 GVDALVVKERHSPSETSVIAKTASGALESIPVCTIANLTNAVKILQENGYFCYALDGGAR 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLR--PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L +    +K+A +LG+EGKG+    KT+   T    ++      ++NVSNAAA+A++
Sbjct: 179 SKLTEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYSDKNFDSINVSNAAAIAMF 237


>gi|114327047|ref|YP_744204.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315221|gb|ABI61281.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 441

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 144/237 (60%), Gaps = 11/237 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT----IDKI 104
           ++L+G+H V AAL NP+R++ +LL T+ A A L     LP P+ +  V  +T    +D++
Sbjct: 208 VWLHGLHAVEAALRNPARRLRRLLLTEEAEATLA--ERLPPPWAL--VAERTERAHMDQL 263

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +G E+VHQG+AL    L SP L  +  +    ++VLD V+DP N+GAILRSA AF    +
Sbjct: 264 LGTESVHQGIALLADKLPSPPLGEILAQRPGPVLVLDQVSDPRNVGAILRSAAAFQACCV 323

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I   R +P ES  +AK+ASGAL+ +P +R+ N+   L  + +     +GL ++       
Sbjct: 324 IVQDRNAPEESGTMAKAASGALDRLPMLRVVNIARTLAALKAADLWVVGLDAEGAPLSGP 383

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
            +   ++AL++GAEG GLR  T+E+   +  L M   +++LNVS A A+ALY I++N
Sbjct: 384 ALGKRRVALVMGAEGDGLRRLTRESCDEIVSLAMAEGMESLNVSVATAIALYEISRN 440


>gi|157826066|ref|YP_001493786.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
 gi|157800024|gb|ABV75278.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
          Length = 244

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 139/248 (56%), Gaps = 12/248 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + KMQ+    S++       ++YG H V +ALNNP R+I  +L T+  L   D +  L  
Sbjct: 3   FNKMQNKKLDSKNC-----YYMYGKHPVFSALNNPKRQIENILCTREIL---DTNKKLIG 54

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHN 146
               + V    + K++G +  HQG+  +  P+ S  L+   ++N +  + +LD + D  N
Sbjct: 55  TRSYEIVNNDILSKLLGNQT-HQGIVAKVRPIFSYNLENLDIKNQKCKIAILDQITDTQN 113

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI+RSA AF  + II  K  SP+ES  +AK+A G LE I  I+++NL   +  +   G
Sbjct: 114 IGAIIRSAAAFDINAIILPKDNSPNESGGIAKAACGTLELISIIKVTNLRSCMNYLKKHG 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F  IGL+  +      ++ +DK+AL+ G+E KG+R   +ET   +A + +   +++LNVS
Sbjct: 174 FWIIGLTGSAHDYFSDKLISDKMALVFGSEDKGIRRLIEETCDYLAKIPISKRVESLNVS 233

Query: 267 NAAAVALY 274
           NAA++  +
Sbjct: 234 NAASIIFH 241


>gi|239948322|ref|ZP_04700075.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922598|gb|EER22622.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 240

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 132/228 (57%), Gaps = 7/228 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG H V +ALNNP R+I  +L T+      D +  L      + V    + K++ +  
Sbjct: 13  YMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLL-ENQ 68

Query: 110 VHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +HQG+A +  P+ S  L+   ++N +  + +LD + D  NIGAI+RSA AF  + II  +
Sbjct: 69  IHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAAFDINAIILPQ 128

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +      ++ +
Sbjct: 129 DNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLIS 188

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           DKIAL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 189 DKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 236


>gi|197104675|ref|YP_002130052.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196478095|gb|ACG77623.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 265

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/256 (36%), Positives = 144/256 (56%), Gaps = 9/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLD 82
           R + R  KK +  +   +    P + +++G H V AAL NP R    +LLAT     +++
Sbjct: 7   RNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPEKAKQIE 66

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVL 138
             A       ++      I + + + AVHQG+AL  APL  P  D      R   +L++L
Sbjct: 67  --ARFGRLKALEPADNHAIAQALPQGAVHQGVALRPAPL--PEADLADFEPRPGAVLLML 122

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+GAILRSA AF   G+I   R++P  +  LAK+A+GA+E  P   + NL+ A
Sbjct: 123 DQVTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLSRA 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L ++   G++T+GL+   ++ L + +    + L+LG+EG+GLR    E    +A + MPG
Sbjct: 183 LDELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPMPG 242

Query: 259 IIKALNVSNAAAVALY 274
             ++LNVSNAAA+ALY
Sbjct: 243 GFESLNVSNAAAIALY 258


>gi|67458667|ref|YP_246291.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
 gi|67004200|gb|AAY61126.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
          Length = 240

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 131/228 (57%), Gaps = 7/228 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG H V +ALNNP R+I  +L T+      D +  L      + V    + K++  + 
Sbjct: 13  YMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLLENQT 69

Query: 110 VHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            HQG+A +  P+ S  L+ V  +N +  + +LD + D  NIGAI+RS+ AF  D II  +
Sbjct: 70  -HQGIAAKVRPIFSYNLEDVDIKNPKCKIAILDQITDTQNIGAIIRSSAAFDIDAIILPQ 128

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +      ++ +
Sbjct: 129 DNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLIS 188

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           DK+AL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 189 DKMALVFGSEDKGIRRLVEETCDYLAKILISKRVESLNVSNAASIIFH 236


>gi|241563421|ref|XP_002401697.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215501889|gb|EEC11383.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 229

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 132/228 (57%), Gaps = 7/228 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG H V +ALNNP R+I  +L T+      D +  L      + V    + K++ +  
Sbjct: 2   YMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLL-ENQ 57

Query: 110 VHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +HQG+A +  P+ S  L+   ++N +  + +LD + D  NIGAI+RSA AF  + II  +
Sbjct: 58  IHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAAFDINAIILPQ 117

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +      ++ +
Sbjct: 118 DNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLIS 177

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           DKIAL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 DKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 225


>gi|16125488|ref|NP_420052.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
 gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
          Length = 278

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/252 (38%), Positives = 147/252 (58%), Gaps = 9/252 (3%)

Query: 28  RDYK-KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLDWDA 85
           RD++ K +  N  SR     ++ +++G H V AAL NP R    +LLAT +   RL    
Sbjct: 18  RDFRSKPRKQNDFSRGQGDAKD-WIWGTHAVEAALANPRRPAPKRLLATPDRAKRLA--P 74

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVN 142
           +L     ++ +  Q I K + + AVHQGLAL   E  PL    L       L+M LD + 
Sbjct: 75  HLQKLTCLQVMEGQEIAKQLPQGAVHQGLALKIDEPEPLTIAELGTPAKGFLVM-LDQIT 133

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP NIGAI RSA AF   G+I   R++P+ S VLAK+A GA++  PY R+ NL+ AL+++
Sbjct: 134 DPQNIGAIFRSAAAFGAKGVILQDRHAPALSGVLAKTAVGAVDKAPYARVVNLSRALEEL 193

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G++ + L+ ++++ L+  + +    L+LG+EG+G+R    E   ++  + MPG  ++
Sbjct: 194 ADLGWRAVALAGEAEQSLDAVLDSQPTVLVLGSEGEGVRRLVAEHCDALGKIPMPGGFES 253

Query: 263 LNVSNAAAVALY 274
           LNVS AAA+ALY
Sbjct: 254 LNVSAAAAIALY 265


>gi|88607795|ref|YP_504889.1| RNA methyltransferase [Anaplasma phagocytophilum HZ]
 gi|88598858|gb|ABD44328.1| RNA methyltransferase, TrmH family, group 3 [Anaplasma
           phagocytophilum HZ]
          Length = 258

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/240 (34%), Positives = 132/240 (55%), Gaps = 14/240 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106
           L++YG H   +AL NP+R   +LL T   + + D    L       ++ V    ID +VG
Sbjct: 10  LWIYGKHACLSALKNPNRVCIELLITHKFIDKNDPVIKLAKNRKIGIRDVEIAKIDSLVG 69

Query: 107 KEAVHQGLALETAPLLSPTL-------DAVRNSQ-----LLMVLDHVNDPHNIGAILRSA 154
            +A+HQG+ L+  PL            D V  ++      ++VLD V D HN+GA+LR+A
Sbjct: 70  SKAIHQGMLLKVLPLFGRNASSLIRIEDIVAQTEAAPTSTILVLDEVTDVHNVGAVLRTA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F+ D ++ T+  SPSES  +AK++SGA++ +P + I NL   L+ +    +   G  +
Sbjct: 130 ACFNVDAVVLTEHNSPSESCGMAKASSGAIDIVPVVCIGNLVKTLEYLKQKNYWCYGFDA 189

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L Q   +++  +ILGAEGKG+R  T++    +  + M   +++LNVSNAAA+A+Y
Sbjct: 190 SGGTCLHQVEFSERRVVILGAEGKGMRHLTKKHCDHLVKIPMSEKMESLNVSNAAAIAMY 249


>gi|295688896|ref|YP_003592589.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
           ATCC 21756]
 gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
           ATCC 21756]
          Length = 276

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 147/251 (58%), Gaps = 7/251 (2%)

Query: 28  RDYK-KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLDWDA 85
           RD++ K +  N  S+     ++ +++G H V AAL+NP R    +LLAT +   RL    
Sbjct: 18  RDFRSKPRKPNDFSKGQGDAKD-WIWGTHAVEAALSNPHRPAPKRLLATPDRAKRLA--P 74

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVND 143
            L     ++ +  Q I K + + AVHQGLAL  +    LS    A  N   L++LD + D
Sbjct: 75  ALQKLSCLQVMEGQEIAKHLPQGAVHQGLALKIDEPESLSIAELAASNDGFLVMLDQITD 134

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIGAI RSA AF   G+I   R++P  S VLAK+A GA++ +PY R+ NL+ AL+++ 
Sbjct: 135 PQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVGAVDKVPYARVVNLSRALEELA 194

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G++ + L+ ++++ L++ +      L+LG+EG+G+R    E    +  + MPG  ++L
Sbjct: 195 DLGWRAVALAGEAEQTLDEVLDGAPTVLVLGSEGEGVRRLVAEHCDVLGKIPMPGGFESL 254

Query: 264 NVSNAAAVALY 274
           NVS AAA+ALY
Sbjct: 255 NVSAAAAIALY 265


>gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31]
 gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31]
          Length = 278

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 145/251 (57%), Gaps = 7/251 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLDWDAN 86
           RD++     N K          +++G H V AAL+NP+R    +LLAT +   RL    N
Sbjct: 18  RDFRSKPRENNKFSKGQGDAKDWIWGTHAVEAALSNPARPAPKRLLATADRAKRLA--PN 75

Query: 87  LPH-PFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRNSQ-LLMVLDHVND 143
           L   PF +  +    I + +   AVHQG+AL+   P      D    +Q LL++LD + D
Sbjct: 76  LAKAPF-LTIMEGAEIARQLPTGAVHQGVALKIDEPEALSVYDLGTPAQGLLVMLDQITD 134

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIGAI RSA AF   G+I   R++P+ + VLAK+A GA++ I Y R+ NL+ AL+++ 
Sbjct: 135 PQNIGAIFRSAAAFGARGVILQDRHAPALTGVLAKTAVGAVDKIAYARVVNLSRALEELA 194

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G++ + L+ ++++ L+Q +      L+LG+EG+G+R    E   +M  + MPG  ++L
Sbjct: 195 DLGWRAVALAGEAQQTLDQVLDGRPTVLVLGSEGEGVRRLVSEHCDAMGKIAMPGGFESL 254

Query: 264 NVSNAAAVALY 274
           NVS AAAVALY
Sbjct: 255 NVSAAAAVALY 265


>gi|254294464|ref|YP_003060487.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
           49814]
 gi|254042995|gb|ACT59790.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
           49814]
          Length = 272

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 145/257 (56%), Gaps = 8/257 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQ-PEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +++  D  K    NQK     Q PE  ++++GVH V++AL N SRK  +   T+N   +L
Sbjct: 7   KQSFADNTKKNYKNQKKPTYQQLPEGEVWIWGVHAVASALKNNSRKKIRAFFTRNGAQKL 66

Query: 82  DWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQL-LMVL 138
             DA  LPH    +   P+ IDK+V  ++VHQG+ L    L      D + N +  +++L
Sbjct: 67  GLDAEHLPHY--AQLADPKDIDKLVPPDSVHQGVVLHARELDGVDFEDVLANGEGPIVIL 124

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+GA+ RS  AF    +I   R SP+    LAK+A GA++ IP + + N++ A
Sbjct: 125 DQVTDPQNVGAVFRSCAAFGAKAVIMQTRNSPNLGGALAKAAVGAIDIIPEVAVVNISRA 184

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMP 257
           +  +   G+  +G+  +++  + Q       +A+++GAEG G+RP   +  + +A + + 
Sbjct: 185 VTALSDAGWWVVGMDGNTEIDIAQAFDTPAPLAIVMGAEGSGIRPLIAKGCSQLAKISIS 244

Query: 258 GIIKALNVSNAAAVALY 274
             +++LNVS+AA++ALY
Sbjct: 245 PQMESLNVSSAASIALY 261


>gi|225631081|ref|ZP_03787814.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225591226|gb|EEH12375.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 257

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 139/244 (56%), Gaps = 20/244 (8%)

Query: 47  ENLFLYGV---HTVSAALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVP 97
           EN +LY     HT  +AL N +R+  +LLAT+N         R   D+       V+ V 
Sbjct: 8   ENFWLYXXXXXHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDS---KGIKVRLVE 64

Query: 98  PQTIDKIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + ++ +V K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR
Sbjct: 65  NKILNDVVPKGANHQGIALNVAPILYNLSVEEIAESSNDSSTIVILDQVTDTHNIGSILR 124

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           ++  F+ + ++    +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G 
Sbjct: 125 TSACFNVNALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 184

Query: 213 SSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             ++K+ ++ EIK+   K  +I G+E KG+R   +E    +  + +  +I +LNVSNAAA
Sbjct: 185 DCNAKENID-EIKSLEKKRVIIFGSEEKGMRRLVKENCDYLLKIPISNVIDSLNVSNAAA 243

Query: 271 VALY 274
           + LY
Sbjct: 244 IGLY 247


>gi|157964809|ref|YP_001499633.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
 gi|157844585|gb|ABV85086.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
          Length = 256

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 136/252 (53%), Gaps = 12/252 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + KMQ+    S+H       ++YG H V +ALNNP R+I  +L T+      D +  L  
Sbjct: 13  FNKMQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---DTNKKLIG 64

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHN 146
               + V    + K++ +   HQG+A +  P+ S  L+ +  +     + +LD + D  N
Sbjct: 65  TRSYEIVNNDILSKLL-ENHTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI+RSA AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   G
Sbjct: 124 IGAIIRSAAAFDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHG 183

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F  IGL+  +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVS
Sbjct: 184 FWIIGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVS 243

Query: 267 NAAAVALYITQN 278
           NAA++  +   N
Sbjct: 244 NAASIIFHSLHN 255


>gi|315499721|ref|YP_004088524.1| RNA methyltransferase, trmh family, group 3 [Asticcacaulis
           excentricus CB 48]
 gi|315417733|gb|ADU14373.1| RNA methyltransferase, TrmH family, group 3 [Asticcacaulis
           excentricus CB 48]
          Length = 322

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 155/299 (51%), Gaps = 26/299 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFL 51
           N   K  S+  FS +   YAK + R+   Y   Q+   +++  +Q          E+ ++
Sbjct: 17  NGPKKSGSKAAFSGQSKPYAKDKPRDKGGYAPAQTARSQTQTHAQARPKPPVRVSEDGWI 76

Query: 52  YGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +G+H V AAL N SR    +L  T +    L+  A       V+          + + AV
Sbjct: 77  WGLHAVEAALKNQSRLGPIRLYVTPDRQKALEQVAPKRGDLHVRLTEMAEFSGFLPQGAV 136

Query: 111 HQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+AL   PL    L+ +    L      L++LD V DP NIGAILR+  AF   G+I 
Sbjct: 137 HQGVALNGPPLEGDDLNGLMEGALRQERPVLVMLDQVTDPQNIGAILRTCAAFGAAGLIM 196

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             R+SP    VLAK+A+GA++ +P+ R++NL+ AL+ +   GF ++G++ +++  L+  +
Sbjct: 197 QDRHSPVMQGVLAKTAAGAMDRVPFARVTNLSRALESLTENGFVSLGMAGEAEHSLQAVL 256

Query: 225 KNDK---------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +            + +++G+EG+GLR    E    +  + MPG  ++LNVS+A ++ALY
Sbjct: 257 EQQGWRQAGSPRALVIVMGSEGEGLRRLVAEHCDHLVKIPMPGGFESLNVSHATSIALY 315


>gi|88658569|ref|YP_507224.1| RNA methyltransferase [Ehrlichia chaffeensis str. Arkansas]
 gi|88600026|gb|ABD45495.1| RNA methyltransferase, TrmH family, group 3 [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 136/239 (56%), Gaps = 17/239 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKN---------ALARLDWDANLPHPFPVKTVPPQ 99
           +++YG H  +AAL N +RK  +LL T+N          + RL    N+     +K V P 
Sbjct: 6   IWIYGKHPCTAALQNKNRKCHELLVTENFMKNNNEISKILRLCKQKNIN----LKQVNPN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAV 155
            I+ ++   + HQG+AL+ + + S T++ V N    S  +++LD V D HN+G+I+RSAV
Sbjct: 62  YINSVLPHNSNHQGIALKASVIDSTTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAV 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F+ D II     SPSE+  ++K++SGA++ IP + + N+ + ++ +   G+   G  + 
Sbjct: 122 CFNVDAIILPYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAK 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + L +   + K  +I G+E KG+R  T+E    +  + +   I +LNVSNAAAVALY
Sbjct: 182 EGEFLHKTKLDSKKLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALY 240


>gi|269958581|ref|YP_003328368.1| RNA methyltransferase [Anaplasma centrale str. Israel]
 gi|269848410|gb|ACZ49054.1| RNA methyltransferase [Anaplasma centrale str. Israel]
          Length = 262

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 13/248 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVP 97
            R  +  E +++ G H   +AL NP+R   +LL T   L +    A +     ++   V 
Sbjct: 2   GRTRNHEECMWICGRHVCISALQNPNRVCRELLVTGEFLKKHPEVARMAQNKGIRPRRVA 61

Query: 98  PQTIDKIVG-KEAVHQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHN 146
            + I KI G    VHQG+AL    L     D +R           +  +++LD V D +N
Sbjct: 62  AEEIGKIWGHGRTVHQGIALRVGKLFGRDGDKLRVEDIVSGSAFTASTVVLLDQVTDINN 121

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+RSA  F  D +I  + +SPSE+ ++ + +SGA + +P +R+ NL   ++ +   G
Sbjct: 122 VGAIVRSAACFDVDAVILPEHHSPSENCIITRVSSGAADLVPVVRVGNLVKTMEYLKQNG 181

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +   G+  D  K L +    ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVS
Sbjct: 182 YWCYGMDVDGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARINSLNVS 241

Query: 267 NAAAVALY 274
           NAAA+ LY
Sbjct: 242 NAAAIVLY 249


>gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
           BAL3]
 gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
           BAL3]
          Length = 294

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 140/232 (60%), Gaps = 5/232 (2%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           R  S  +N FL+G H V AAL NP+R+ + +LLAT    A ++    L H   ++ V  Q
Sbjct: 52  RSKSDADN-FLWGRHPVLAALANPARRGMGRLLATAERAAEIE-QGQLAHGHKIEVVEVQ 109

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAF 157
            + +++   AVHQGLA +  PL   +L+ +      ++++LD + DP N+GAI RSA+AF
Sbjct: 110 ALTRMLPAGAVHQGLAFKVQPLEGVSLEELAEPAQGVIVMLDQLTDPQNVGAIFRSALAF 169

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GI+   R++P+ +  LAK+A GA E +P+ R++NL+ AL+++   G++ +GL    +
Sbjct: 170 GARGIVVQDRHAPALAGALAKAAVGATERLPHARVTNLSRALERLADLGWRAVGLDGTGE 229

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           + LE+ +      L++G+EG G+R    E    +A + MPG  ++LNVSNAA
Sbjct: 230 QTLEEALDRQPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSNAA 281


>gi|15892932|ref|NP_360646.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
 gi|15620124|gb|AAL03547.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
          Length = 240

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 12/245 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           MQ+    S+H       ++YG H V +ALNNP R+I  +L T+      + +  L     
Sbjct: 1   MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRA 52

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149
            + V    + K++  +  HQG+A +  P+ S  L+ +  +     + +LD + D  NIGA
Sbjct: 53  YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  
Sbjct: 112 IIRSAAAFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           IGL+  +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA
Sbjct: 172 IGLTGSANDYFTNKLISDKIVLVFGSEDKGIRRLVVETCDYLAKIPISQRVESLNVSNAA 231

Query: 270 AVALY 274
           ++  +
Sbjct: 232 SIIFH 236


>gi|157804038|ref|YP_001492587.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
 gi|157785301|gb|ABV73802.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
          Length = 239

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 130/229 (56%), Gaps = 7/229 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG H V +ALNNP R+I  +L T+      D +  L      + V    + K++  + 
Sbjct: 13  YMYGKHPVFSALNNPKRQIENVLCTREIF---DANKKLIGTRSYEIVNNDILSKLLENQT 69

Query: 110 VHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            HQG+A +  P+ S  L+ +  +N +  + +LD + D  NIGAI+RSA AF  + I+  +
Sbjct: 70  -HQGIAAKVRPIFSYNLEDIDIKNPKCKITILDQITDTQNIGAIIRSAAAFDINAILLPQ 128

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +P+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +      +   
Sbjct: 129 DNAPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTNKFIT 188

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +KIAL+ G+E KG+R   ++T   +A + +   +++LNVSNAA++  ++
Sbjct: 189 NKIALVFGSEDKGMRKLVEKTCDYLAKIPISKRVESLNVSNAASIIFHL 237


>gi|229587012|ref|YP_002845513.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
 gi|228022062|gb|ACP53770.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
          Length = 240

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 132/245 (53%), Gaps = 12/245 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           MQ+    S+H       ++YG H V +ALNNP R+I  +L T+      + +  L     
Sbjct: 1   MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRA 52

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149
            + V    + K++  +  HQG+A +  P+ S  L+ +  +     + +LD + D  NIGA
Sbjct: 53  YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA AF  + II  +  SP+ES  +AK+A G LE IP I++ NL   +  +   GF  
Sbjct: 112 IIRSAAAFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVINLRSCMNYLKKHGFWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           IGL+  +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA
Sbjct: 172 IGLTGSANDYFTDKLISDKIVLVFGSEDKGIRKLVAETCDYLAKIPISQRVESLNVSNAA 231

Query: 270 AVALY 274
           ++  +
Sbjct: 232 SIIFH 236


>gi|329851537|ref|ZP_08266294.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328840383|gb|EGF89955.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 297

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 147/260 (56%), Gaps = 14/260 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R   +  K QSF QKS+     ++ +L+GVH V AAL N +R+    L       +    
Sbjct: 35  RQAENAPKPQSF-QKSKVN---DDGWLWGVHAVEAALKNVNRQGPLKLYLSEERTKTIAP 90

Query: 85  ANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHV 141
           A L      V T+    I +++ + AVHQG+AL    L    L+++      ++++LD V
Sbjct: 91  ALLNRSGLRVSTLMMPDIARMLPQGAVHQGIALHGPVLEGVGLESIMEGGDGVILMLDQV 150

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP NIGAI RSA AF   G++   R+SP    VLAK+A+GA + +P+ R++NL+ +L+ 
Sbjct: 151 TDPQNIGAIFRSAAAFGVQGLVMQDRHSPPLQGVLAKTAAGAADRVPFARVTNLSRSLEL 210

Query: 202 MHSWGFQTIGLSSDSK----KPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +   G+ ++GL+ + +      L Q+   I   K+ L+LG+EG+GLR    E    +A +
Sbjct: 211 LGENGYVSVGLAGEGEFNLHTLLAQQGWGISLKKLVLVLGSEGEGLRRLVAEHCDHLARI 270

Query: 255 HMPGIIKALNVSNAAAVALY 274
            MPG  ++LNVS+AA+++LY
Sbjct: 271 PMPGGFESLNVSHAASISLY 290


>gi|157828863|ref|YP_001495105.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801344|gb|ABV76597.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 240

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 133/245 (54%), Gaps = 12/245 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           MQ+    S+H       ++YG H V +ALNNP R+I  +L T+      +    L     
Sbjct: 1   MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRA 52

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149
            + V    + K++  + +HQG+A +  P+ S  L+ +  +     + +LD + D  NIGA
Sbjct: 53  YEIVNNDILSKLLENQ-IHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA AF  + II  +  SP+E+  +AK+A G LE IP I+++NL   +  +   GF  
Sbjct: 112 IIRSAAAFDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           IGL+  +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA
Sbjct: 172 IGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAA 231

Query: 270 AVALY 274
           ++  +
Sbjct: 232 SILFH 236


>gi|34581366|ref|ZP_00142846.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
 gi|28262751|gb|EAA26255.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
          Length = 240

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 132/245 (53%), Gaps = 12/245 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           MQ+    S+H       ++YG H V +ALNNP R+I  +L T+      + +  L     
Sbjct: 1   MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTRKIF---ETNKKLIGTRA 52

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149
            + V    + K++  +  HQG+A +  P+ S  L+ +  +     + +LD + D  NIG 
Sbjct: 53  YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGT 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  
Sbjct: 112 IIRSAAAFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           IGL+  +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA
Sbjct: 172 IGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAA 231

Query: 270 AVALY 274
           ++  +
Sbjct: 232 SIIFH 236


>gi|254449207|ref|ZP_05062656.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           HTCC5015]
 gi|198261184|gb|EDY85480.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           HTCC5015]
          Length = 264

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 125/250 (50%), Gaps = 12/250 (4%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PF 91
           Q  +   R T  P+  FL+G+H V A +     ++FQL   K A  RL     L      
Sbjct: 7   QRSSGSKRGTKSPQ--FLFGLHAVEAFIQRRPEEVFQLYWQKGADQRLGKLQALATQLGL 64

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           P + V  Q +D  V   A HQG+        L     L   LD V N  L++VLD V DP
Sbjct: 65  PTQYVERQQLDDWV-DGARHQGVIAQVRSSELWREADLEGILDGVENVPLVLVLDGVTDP 123

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GA LRSA     D +I  K  S   +AV  K A GA E  P+I+++NL   L+ +  
Sbjct: 124 HNLGACLRSANGAGVDVVIAPKDKSAGLTAVSRKVACGAAEETPFIQVTNLARTLKGLAE 183

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   +GL+    + L +   +  +AL++GAEG GLR  T+E+   +  + M G + +LN
Sbjct: 184 RGLWIVGLADGEDRSLYEGRLDGPMALVMGAEGDGLRRLTRESCDEIVAIPMGGSVSSLN 243

Query: 265 VSNAAAVALY 274
           VS AA V LY
Sbjct: 244 VSVAAGVCLY 253


>gi|165933590|ref|YP_001650379.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
 gi|165908677|gb|ABY72973.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
          Length = 240

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 132/245 (53%), Gaps = 12/245 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           MQ+    S+H       ++YG H V +ALNNP R+I  +L T+      +    L     
Sbjct: 1   MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRA 52

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149
            + V    + K++  +  HQG+A +  P+ S  L+ +  +     + +LD + D  NIGA
Sbjct: 53  YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA AF  + II  +  SP+E+  +AK+A G LE IP I+++NL   +  +   GF  
Sbjct: 112 IIRSAAAFDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           IGL+  +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA
Sbjct: 172 IGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAA 231

Query: 270 AVALY 274
           ++  +
Sbjct: 232 SILFH 236


>gi|37913005|gb|AAR05334.1| predicted tRNA/rRNA methyltransferase [uncultured marine alpha
           proteobacterium HOT2C01]
          Length = 257

 Score =  135 bits (339), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 132/241 (54%), Gaps = 8/241 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102
           Q  + ++YG H V  AL N +R  +++  T  A  +L  +  L +     +K    + ID
Sbjct: 13  QNSDYWIYGHHAVVGALMNENRVKYEVYFTSEAEKKLKNEIKLENINVISIKKTRDE-ID 71

Query: 103 KIVGKEAVHQGLALETAPLLSPTL-DAVRN----SQLLMVLDHVNDPHNIGAILRSAVAF 157
            ++   + HQG+ +    L +P L D + N      ++ +LD ++DP N+GAI RSA+AF
Sbjct: 72  LLLKGISNHQGICMRVEKLQTPKLSDFINNLNEERSIIFLLDQLDDPQNVGAIFRSALAF 131

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + DGII T   S +E++ LAK+AS AL+ +P+I+I N++  ++ +   G+   GL   ++
Sbjct: 132 NIDGIILTNTNSVTENSFLAKTASSALDKVPFIKIQNISSCIKILKDSGYWIYGLDMKAE 191

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + +     KI  ILG+E KG+R  T         + M   +++LNVSN AA+ ++   
Sbjct: 192 RSITETTFPKKIVFILGSESKGMRKITDSLCDEGLKIKMSDNLESLNVSNTAAIIMFYVS 251

Query: 278 N 278
           N
Sbjct: 252 N 252


>gi|58698910|ref|ZP_00373774.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58534575|gb|EAL58710.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila ananassae]
          Length = 236

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 131/229 (57%), Gaps = 17/229 (7%)

Query: 59  AALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           +AL N +R+  +LLAT+N         R   D+       V+ V  + ++ ++ K A HQ
Sbjct: 2   SALKNKNRRCIELLATENFYREHKKEIRQCVDS---KGIKVRLVESKILNDVLPKGANHQ 58

Query: 113 GLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           G+AL  AP+L         ++  +S  +++LD V D HNIG+ILR++  F+ D ++    
Sbjct: 59  GIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHN 118

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN- 226
           +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G   ++K+ ++ EIK+ 
Sbjct: 119 HSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENID-EIKSF 177

Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+ LY
Sbjct: 178 EKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226


>gi|83858604|ref|ZP_00952126.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853427|gb|EAP91279.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 219

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 106/182 (58%), Gaps = 5/182 (2%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAV 155
           P  I   +   AVHQG AL+T+   + +L+AV      LL+VLD + DPHN+GAILRS  
Sbjct: 24  PGQITSRLPDGAVHQGFALKTSAPPAESLNAVLEPTHGLLVVLDQITDPHNVGAILRSCA 83

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF    +I   R SP     L K+A G  E IP ++++N+ D L  +   G   IGL+ +
Sbjct: 84  AFGVRAVICQDRKSPPFFGALCKTAVGTAETIPQVQVTNIADTLIALQEAGRHVIGLAGE 143

Query: 216 SKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           ++  L  EI       + L+LGAEG GLRP+  E  +S+A + M    ++LNVSNAAA+A
Sbjct: 144 AEARLGDEIAAHAGPGLVLVLGAEGSGLRPRVAEHCSSLARIPMGPKAESLNVSNAAAIA 203

Query: 273 LY 274
           LY
Sbjct: 204 LY 205


>gi|114570367|ref|YP_757047.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114340829|gb|ABI66109.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 289

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 15/249 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R+  K   ++++S+     ++ +++G H V AA+ N  R+I +L  T+NA AR     +L
Sbjct: 25  RNTSKRPDYSRRSKPAGTGDSGWIWGRHAVLAAVANKRREILELKVTRNA-AR-----DL 78

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPH 145
           P     + V P+ ID  + + AVHQG A     L S +++ V +     L+VLD + DPH
Sbjct: 79  PDGTDHQQVEPKVIDNALPEGAVHQGFAARARALPSESVNGVIDPTHGALLVLDQITDPH 138

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+LRSA AF    +I   R +P     + KSA GA E + ++R++N+ D L +    
Sbjct: 139 NVGAVLRSAAAFGIRAVIMQDRKAPPLFGTVCKSAVGAAERVAHVRVTNIADTLLEFSKA 198

Query: 206 GFQTIGLSSDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           G   +GL+ +++  L   +           + L++G+E KGLR +  E    +  + M  
Sbjct: 199 GRHVLGLAGEAELDLATALAAPDGKGWGPGLVLVMGSEDKGLRQRVAECCDQLVRIPMTD 258

Query: 259 IIKALNVSN 267
            +++LNVSN
Sbjct: 259 TVESLNVSN 267


>gi|73667231|ref|YP_303247.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
 gi|72394372|gb|AAZ68649.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
          Length = 252

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 133/239 (55%), Gaps = 17/239 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNA---------LARLDWDANLPHPFPVKTVPPQ 99
           +++YG H   AAL N +R+ +++L T+N          ++ L    N+     +KTV   
Sbjct: 6   IWIYGKHACIAALQNKNRECYEMLVTENITKNNSEITKISELCKQRNIN----LKTVNLN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----MVLDHVNDPHNIGAILRSAV 155
            I+ ++   + HQG+AL+ + +   T++ + NS  +    ++LD + D HN+GAI+RSAV
Sbjct: 62  YINSVLPHNSNHQGIALKASTINPLTIEEILNSSTINSTIILLDQITDIHNVGAIMRSAV 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F+ D II     SPSE+  ++K++SGA++ IP   + NL   ++   + G+   G  + 
Sbjct: 122 CFNVDAIILPYHNSPSENCGMSKTSSGAIDMIPIAYVINLVSTIKLFKNAGYWCYGFDTK 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + L +   ++K  +I G+E KG+R  T+E    +  +     I +LNVSNAAAVALY
Sbjct: 182 EGELLHKTKFDNKKLIIFGSEDKGMRKLTKENCDFLLKIATSNKIDSLNVSNAAAVALY 240


>gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
 gi|222475374|ref|YP_002563791.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Florida]
 gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
 gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Florida]
          Length = 261

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVG 106
           +++ G H   AAL NP+R    +L T   L +    A +     V  K V  + I KI+G
Sbjct: 11  MWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILG 70

Query: 107 KEAV-HQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAV 155
              + HQG+AL    L       +R           +  +++LD V D +N+GAI+RSA 
Sbjct: 71  HGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAA 130

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  D +I  + +SPSES  + K++SGA + +P +++ NL   ++ +   G+   G+ + 
Sbjct: 131 CFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAG 190

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K L +    ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVSNAAA+ALY
Sbjct: 191 GDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 249


>gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Puerto Rico]
 gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Virginia]
          Length = 251

 Score =  132 bits (331), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVG 106
           +++ G H   AAL NP+R    +L T   L +    A +     V  K V  + I KI+G
Sbjct: 1   MWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILG 60

Query: 107 KEAV-HQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAV 155
              + HQG+AL    L       +R           +  +++LD V D +N+GAI+RSA 
Sbjct: 61  HGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAA 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  D +I  + +SPSES  + K++SGA + +P +++ NL   ++ +   G+   G+ + 
Sbjct: 121 CFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAG 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K L +    ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVSNAAA+ALY
Sbjct: 181 GDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 239


>gi|58697096|ref|ZP_00372541.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila simulans]
 gi|58536620|gb|EAL59943.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila simulans]
          Length = 236

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 130/229 (56%), Gaps = 17/229 (7%)

Query: 59  AALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           +AL N +R+  +LLA +N         R   D+       V+ V  + ++ ++ K A HQ
Sbjct: 2   SALTNQNRRCIELLAPENFYREHKKEIRQCVDS---KGIKVRLVESKILNDVLPKGANHQ 58

Query: 113 GLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           G+AL  AP+L         ++  +S  +++LD V D HNIG+ILR++  F+ D ++    
Sbjct: 59  GIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHN 118

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN- 226
           +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G   ++K+ ++ EIK+ 
Sbjct: 119 HSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENID-EIKSF 177

Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+ LY
Sbjct: 178 EKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226


>gi|58617359|ref|YP_196558.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Gardel]
 gi|58416971|emb|CAI28084.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
           str. Gardel]
          Length = 249

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 140/244 (57%), Gaps = 14/244 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQTID 102
           +++YG H   AAL N +RK  +LL T+N       + ++   +   + +P K V   TI+
Sbjct: 6   IWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNINTIN 64

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAF 157
            ++   + HQG+AL+ + + + +++ V ++       +++LD V D +N+G+I+RSAV F
Sbjct: 65  SVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAVCF 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +   +I     SPSE+  ++K++SGA++ IP + + N+++A+  +   G+   G  +   
Sbjct: 125 NVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAKQG 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--I 275
           +PL +   ++K  +I G+E KGLR  T+E    +  +     I +LNVSNAAA+ALY   
Sbjct: 185 EPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALYSIF 244

Query: 276 TQNH 279
            QNH
Sbjct: 245 IQNH 248


>gi|57239339|ref|YP_180475.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161418|emb|CAH58342.1| putative tRNA/rRNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 249

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 140/244 (57%), Gaps = 14/244 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQTID 102
           +++YG H   AAL N +RK  +LL T+N       + ++   +   + +P K V   TI+
Sbjct: 6   IWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNLNTIN 64

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAF 157
            ++   + HQG+AL+ + + + +++ V ++       +++LD V D +N+G+I+RSAV F
Sbjct: 65  SVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAVCF 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +   +I     SPSE+  ++K++SGA++ IP + + N+++A+  +   G+   G  +   
Sbjct: 125 NVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAKQG 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--I 275
           +PL +   ++K  +I G+E KGLR  T+E    +  +     I +LNVSNAAA+ALY   
Sbjct: 185 EPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALYSIF 244

Query: 276 TQNH 279
            QNH
Sbjct: 245 IQNH 248


>gi|58579305|ref|YP_197517.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417931|emb|CAI27135.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 249

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 138/243 (56%), Gaps = 12/243 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ-----TIDK 103
           +++YG H   AAL N +RK  +LL T+N +   +    +      K + P+     TI+ 
Sbjct: 6   IWIYGKHPCVAALQNINRKCHELLFTENFIKHNNGIQKIRELIKQKNIYPKQVNLNTINS 65

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFS 158
           ++   + HQG+AL+ + + + +++ V ++       +++LD V D +N+G+I+RSAV F+
Sbjct: 66  VLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSAVCFN 125

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I     SPSE+  ++K++SGA++ IP + + N+++A+  +   G+   G  +   +
Sbjct: 126 VHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDAKQGE 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--IT 276
           PL +   ++K  +I G+E KGLR  T+E    +  +     I +LNVSNAAA+ALY    
Sbjct: 186 PLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALYSIFI 245

Query: 277 QNH 279
           QNH
Sbjct: 246 QNH 248


>gi|238650976|ref|YP_002916832.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
           Rustic]
 gi|238625074|gb|ACR47780.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
           Rustic]
          Length = 240

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 12/245 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           MQ+    S+H       ++YG H V +ALNNP R+I  +L T+      +    L     
Sbjct: 1   MQNKKLDSKHC-----YYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRA 52

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGA 149
            + V    + K++  +  HQG+A +  P+ S  L+ +  +     + +LD + D  NIGA
Sbjct: 53  YEIVNNDILSKLLENQT-HQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGA 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +    F  
Sbjct: 112 IIRSAAAFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHRFWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           IGL+  +      ++ +DK  L+ G+E KG+R    ET   +A + +   +++LNVSNAA
Sbjct: 172 IGLTGSANDYFTDKLISDKTVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAA 231

Query: 270 AVALY 274
           ++  +
Sbjct: 232 SILFH 236


>gi|189183948|ref|YP_001937733.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180719|dbj|BAG40499.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
           str. Ikeda]
          Length = 266

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 12/231 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +++G H   AALNNP R I  +  T++    L   + L      K V  + + +++G + 
Sbjct: 32  YIFGTHASLAALNNPLRVIRYIYCTESCFLSL---SKLIQKHDYKIVTTKFLHQLLGSQI 88

Query: 110 VHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           VHQG+A+ T PL   T++ +++  L      + +LD + D +N+GAI+RSA AF+   II
Sbjct: 89  VHQGIAVNTIPL---TINGIKHIDLATPNYKIAILDQLLDHNNLGAIIRSAAAFNISTII 145

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  S  E+  +AK A GALE I  +++ NL + +  +  +GF  IGL  ++   L ++
Sbjct: 146 LPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKYGFWIIGLDLNNSNQLTEQ 205

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + K+A +LG+E KGLR  T++    +  + M    ++LNV+ AA +  Y
Sbjct: 206 TFHSKMAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFY 256


>gi|116621924|ref|YP_824080.1| RNA methyltransferase [Candidatus Solibacter usitatus Ellin6076]
 gi|116225086|gb|ABJ83795.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 237

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 50  FLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIV 105
            L G+H V  AL   NP  +I  ++A      RL    +L      PV+  P  ++D++ 
Sbjct: 3   LLSGIHPVVEALRAGNPLERI--VIAQGAGGPRLQEIIDLARQAKIPVRFEPRPSLDRLA 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G  A HQG+    A      LD+V  S++L+VLD V DPHN+GAI+R+A A     +I  
Sbjct: 61  GSSA-HQGVVGLGAARKYADLDSVAESEMLVVLDGVEDPHNLGAIVRTAHAAGAGAVIVP 119

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R +   + V+AK+A+GALEH+P +R++N+  AL+ +   G    GL     +  +Q   
Sbjct: 120 ERRAAGVTDVVAKAAAGALEHLPVVRVTNINRALEDLKERGMWIYGLDERGTESYDQIDY 179

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K  L+LG EGKGL  + ++    +  + M G I +LNVS AA V L+
Sbjct: 180 AKKSVLVLGGEGKGLHEQVRKHCDVLVRIPMAGQISSLNVSVAAGVVLF 228


>gi|259047742|ref|ZP_05738143.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
           adiacens ATCC 49175]
 gi|259035933|gb|EEW37188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
           adiacens ATCC 49175]
          Length = 287

 Score =  128 bits (322), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           F++G H V  AL  P R  ++F    T    A    D        V+TVP   I+ +VG 
Sbjct: 48  FVFGRHAVVEALQTPDRVNRVFIQEGTSGRDAAKVIDLAREKGIQVQTVPKTKIEDLVGN 107

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AVHQGL    A      L+ V            +++LD V DPHN+G+ILR+A A    
Sbjct: 108 -AVHQGLVASIAAYEYADLEDVFKKAEEKGEDPFIVILDGVEDPHNLGSILRTADATGVH 166

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR S S +A +AK+++GA+EH+P +R++NLT  ++++ + G    G   +     
Sbjct: 167 GIIIPKRRSASLTATVAKASTGAIEHVPVVRVTNLTQTIEQLKARGVWVFGTDMNGTDYR 226

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   K   +A+++G EGKG+    +E+   M  + M G +++LN S A+A+ +Y
Sbjct: 227 KWNTKG-PLAIVMGNEGKGVSRIVKESVDEMVTIPMVGHVQSLNASVASALMMY 279


>gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 247

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIV 105
            F+ G H V  AL NP+RK+ ++  T++A   + + +   N+     V     + +DK  
Sbjct: 6   FFIAGQHAVIEALRNPNRKVLRVFLTEDAKKNIHKKNSRKNVLEDVKVYFKSKKELDKYT 65

Query: 106 GKEAV-HQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            KE + H G   E   L  P L      +     + LD V DP NIG+++RSA +F  DG
Sbjct: 66  SKEQLMHNGYIAEVEHLEQPDLKEFIKEKKDCTFVCLDEVTDPRNIGSLIRSAASFKIDG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R+ PS+S ++ KSASG +EH+   ++SN+   L+ +    F   G  +  +K   
Sbjct: 126 LIVKERHFPSDSKLMYKSASGCMEHLNIFKVSNINSTLKNLREKNFWVYGFDARGEKNFT 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 K  L+ G+EG G++  T + A     + +   I++LN+SN+AA+  +
Sbjct: 186 DVKWEGKNVLLFGSEGFGMKEHTGKYADFFVKIDINKDIESLNISNSAAIVFH 238


>gi|296533966|ref|ZP_06896485.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296265710|gb|EFH11816.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 250

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/244 (37%), Positives = 134/244 (54%), Gaps = 3/244 (1%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93
           Q   +  R  + P  L+LYG+HTV+AAL NP R++ +LL T  A A L      P     
Sbjct: 1   QDAGRAPREATPPNTLWLYGLHTVAAALANPRRRLKRLLLTAEAEAALAEKLPRPWKLQA 60

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-LLMVLDHVNDPHNIGAIL 151
           + V        + ++AVHQG AL   PL    L DA+  S+  +++LD V DP N+GAIL
Sbjct: 61  ERVERARFQTFLTEDAVHQGAALLVEPLPPVALEDALEKSRGTVLLLDQVTDPRNVGAIL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA AF    ++   R +P E+  +A++A GAL+ +P +R  NL   +  +   G+  +G
Sbjct: 121 RSAAAFGAAAVVMQDRNAPPETGAMARAAVGALDTVPVVREVNLARTITVLQKAGYWVMG 180

Query: 212 LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           L   +K  L      D+  AL+LGAE  GLR   +ET   +  L +   +++LNVS AAA
Sbjct: 181 LDGTAKTELAAAKPTDRPAALVLGAEDSGLRRLQRETCDELVKLPIRPEMESLNVSVAAA 240

Query: 271 VALY 274
           +ALY
Sbjct: 241 IALY 244


>gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 428

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 132/241 (54%), Gaps = 14/241 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIV 105
           +++G H+V AALN   R I ++  T    +   +   L         ++ VP   + ++ 
Sbjct: 190 WIWGKHSVFAALN-SERPINRIWCTSEIFSSEKFYLLLKDLKSKGVLIEEVPWSRLSQLT 248

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              AVHQG+AL+ A   S +L+ +        ++ +++ LD V DPHN GAI+RSA AF 
Sbjct: 249 SG-AVHQGVALQHASTESISLEKLIDISKSKSSNPIIVALDGVTDPHNFGAIIRSAEAFD 307

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
           C GII  +R S   +  +AK A+GALEHIP  R+ NL  A+ ++   GF  IGLS D + 
Sbjct: 308 CKGIIVPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKKGFIIIGLSGDGQV 367

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YITQ 277
           P+ +  +   + +I+GAE KG+    Q+    +  + + G   +LN S AAA++L Y++ 
Sbjct: 368 PISEFKEKAPVVVIVGAENKGISLLVQKKCDYLLKIPLKGKTSSLNASVAAAISLCYLSN 427

Query: 278 N 278
           N
Sbjct: 428 N 428


>gi|300691792|ref|YP_003752787.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299078852|emb|CBJ51513.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 249

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106
            L G H V+A L + +R I ++    N   R   D         V+ +P   + +  I G
Sbjct: 6   LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+     AL  A  L   LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+
Sbjct: 185 QADFKGAIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLF 237


>gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15]
          Length = 280

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 131/249 (52%), Gaps = 16/249 (6%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPP 98
           +H  + +  +LYG H+V AAL +  RK+  L    +   RL    +A      P+     
Sbjct: 13  KHQQEDQLEWLYGTHSVLAALRHKRRKLVGLHLKDSGQGRLQALVEAAKKSGVPIHYEAS 72

Query: 99  QTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           +     +G E+VHQG+AL+  PL       L P      N  L+ VLD V DPHN+GAI+
Sbjct: 73  RWFSDNLG-ESVHQGVALQCGPLSLLDEAELPPPNSGKPN--LVFVLDGVEDPHNLGAIV 129

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+   F    +   K  + + S V AK++ GALE    +R++NL   L++    G+  +G
Sbjct: 130 RTLGFFGVSAVAIPKDRAAALSPVAAKASVGALEWFSVVRVTNLHRFLERQKKRGYWVVG 189

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAA 269
           L   S+ PL Q   +  + ++LGAEG GLRP T+ T   +  + +PG   +++LNVSNAA
Sbjct: 190 LDGASRNPLRQLEWDRPLMVVLGAEGSGLRPLTKRTCDWL--VSIPGTPEVESLNVSNAA 247

Query: 270 AVALYITQN 278
           AV  Y  +N
Sbjct: 248 AVTCYHLRN 256


>gi|300704400|ref|YP_003746003.1| tRNA guanosine-2'-o-methyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299072064|emb|CBJ43396.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 249

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 125/233 (53%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D         V+ +P   + +  I G
Sbjct: 6   LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+     AL  A  L   LD +  S LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIEGSPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+
Sbjct: 185 QADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLF 237


>gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9515]
          Length = 349

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 7/177 (3%)

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQG+AL+ A   + +LD +        N+ + + LD + DPHN+GAI+RSA AF C G
Sbjct: 172 AVHQGVALQLATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKG 231

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +R S   +  +AK A+GALEHIP  R+ NL  A+ ++   GF  +GLS D + P+ 
Sbjct: 232 IIIPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPIS 291

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  +   I +++GAE KG+   TQ+    +  + + G   +LN S AAA++L    N
Sbjct: 292 KFDQKAPIVVVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCYLSN 348


>gi|227501072|ref|ZP_03931121.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
 gi|227216845|gb|EEI82243.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 112/192 (58%), Gaps = 5/192 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +  V  +  DKI   +  HQG+ LE       T+D V+++  L++LD + DPHN+GAI
Sbjct: 45  IEISFVDKRFFDKI---DMNHQGVMLEVESFKYATMDDVKDANRLIILDKIEDPHNLGAI 101

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA +F  DG+I  +R S S ++ + K+++GA+ +I  IR++NLT  ++ +   GF   
Sbjct: 102 IRSAESFGFDGVIIPERRSASVTSTVYKTSAGAINNIKVIRVTNLTRTIKDLKDMGFWIY 161

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL+ ++   + +     K+ L++G EG+G+    +E    + ++ M G + +LN S AA 
Sbjct: 162 GLAGEADSDISKADLKGKVTLVIGNEGEGISRLVRENCDMLINIPMLGKVNSLNASVAAG 221

Query: 271 VALY--ITQNHF 280
           +++Y  + QN F
Sbjct: 222 ISMYELLRQNGF 233


>gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Mississippi]
          Length = 244

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 13/229 (5%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVGKEAV-HQGLA 115
           AAL NP+R    +L T   L +    A +     V  K V  + I KI+G   + HQG+A
Sbjct: 4   AALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGHGGMAHQGIA 63

Query: 116 LETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           L    L       +R           +  +++LD V D +N+GAI+RSA  F  D +I  
Sbjct: 64  LMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAACFDADAVILP 123

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           + +SPSES  + K++SGA + +P +++ NL   ++ +   G+   G+ +   K L +   
Sbjct: 124 EHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGGDKALHEISF 183

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVSNAAA+ALY
Sbjct: 184 CERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALY 232


>gi|119474664|ref|ZP_01615017.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2143]
 gi|119450867|gb|EAW32100.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2143]
          Length = 247

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 124/241 (51%), Gaps = 18/241 (7%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH------PFPVKTVPPQT 100
           E  +++G+H V A L   S +I +L   +    R D   N             KTVP + 
Sbjct: 3   EEHWVFGIHAVEALLQGQSNRIEELWLQQ---GRNDKRINELQLHARQVGVKCKTVPREE 59

Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +DK V  +  HQG+   T P        L   LD + +  LL++LD V DPHN+GA LR+
Sbjct: 60  LDKQV--DGRHQGVVAFTKPAQTLRDRDLKEMLDGLDHPPLLLILDGVTDPHNLGACLRT 117

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   D +I  K  S   +A + K A GA E +PYI+++NL   ++ +   G    G +
Sbjct: 118 ADAAGVDAVIAPKDSSAPLNATVRKVACGAAEVVPYIQVTNLARTMKDIQGRGIWITGTA 177

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++++ + Q      +AL++GAEGKG+R  T+E    + +L M G + +LNVS A  V L
Sbjct: 178 GEAEQSVYQANLTGPVALVMGAEGKGMRRLTRENCDYLINLPMAGSVSSLNVSVATGVCL 237

Query: 274 Y 274
           +
Sbjct: 238 F 238


>gi|227485587|ref|ZP_03915903.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236453|gb|EEI86468.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
          Length = 239

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 110/191 (57%), Gaps = 5/191 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +  V  +  DKI   E  HQG+ +E        L  +   Q L++LD + DPHN+GAI+R
Sbjct: 52  INFVDKRFFDKI---ELNHQGVMVEAESFEYKDLRDLDKYQRLIILDQIEDPHNLGAIIR 108

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA +F  DG+I  +R S S S ++ K+++GA+ +I  I + N   A++++   GF   GL
Sbjct: 109 SAESFGFDGVIIPERRSASVSPIVYKTSAGAINNINIIMVKNTNRAIEEIKEAGFWVYGL 168

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++  P++Q     K+ LI+G EGKGL    +E    + ++ M G + +LN S A+A+A
Sbjct: 169 AGEASSPIDQVDLKGKVCLIVGNEGKGLSRLVRENCDILINIPMKGFVNSLNASVASAIA 228

Query: 273 LY--ITQNHFA 281
           +Y  + QN F+
Sbjct: 229 MYEVLRQNGFS 239


>gi|148284217|ref|YP_001248307.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
 gi|146739656|emb|CAM79445.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 242

 Score =  125 bits (314), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 12/231 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +++G H   AALNNP R I  +  T++    L   + L      K V  + + +++G + 
Sbjct: 8   YIFGTHASLAALNNPFRVIRYIYCTESCFLSL---SKLIQKHNYKIVTTKFLHQLLGSQI 64

Query: 110 VHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           VHQG+A+ T PL   T++ ++N  L      + +LD + D +N+GAI+RSA AF    II
Sbjct: 65  VHQGIAVNTIPL---TINGIKNIDLNTPNYKIAILDQLLDHNNLGAIIRSAAAFDISTII 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  S  E+  +AK A GALE I  +++ NL + +  +    F  IGL  +    L ++
Sbjct: 122 LPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKHEFWIIGLDLNDSNQLTEQ 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + K A +LG+E KGLR  T++    +  + M    ++LNV+ AA +  Y
Sbjct: 182 TFHSKTAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFY 232


>gi|304312001|ref|YP_003811599.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
           proteobacterium HdN1]
 gi|301797734|emb|CBL45956.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
           proteobacterium HdN1]
          Length = 248

 Score =  125 bits (313), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 13/237 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
           +LYG+H+VSA L     ++ +L   +    +   D       H    + +P +T+D  + 
Sbjct: 6   WLYGIHSVSAILERHPDRVLELFIVETREDKRIGDIIKLAKTHGLRAQFIPKKTMDHQLE 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + AVHQG+A+   P        L   ++       L+ LD + DPHN+GA LRSA A   
Sbjct: 66  EGAVHQGVAIRYRPSAPGDENDLKHLVENANAPLFLLFLDGITDPHNLGACLRSADAAGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSK 217
             +ITT+  S   SA + K A GA E +P+I+++NL   L+ +   G    G  LS  +K
Sbjct: 126 HAVITTRDKSAGLSAAVRKVAVGAAETVPFIQVTNLARTLEMVRQQGVWVYGTALSEGAK 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              E +++ + I +++GAEG GLR  TQ+    + ++ M G +++LNVS A  V L+
Sbjct: 186 TIYETDLRGN-IGIVMGAEGVGLRRLTQDCCDGLVYIPMAGTVQSLNVSVATGVCLF 241


>gi|171778431|ref|ZP_02919589.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282832|gb|EDT48256.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 249

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 35/248 (14%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFP 92
           +N  +YGVH V+ AL  N   K++             ++LAT+  ++ + W        P
Sbjct: 9   QNDIVYGVHAVTEALQANTGNKLYIQDDLRGKNVDKIKMLATEKKVS-ISWT-------P 60

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHN 146
            KT+   T        AVHQG  L  +      LD++        + L+++LD +NDPHN
Sbjct: 61  KKTLSDMT------NGAVHQGFVLRVSEFAYAELDSILEKAVQEENPLILILDELNDPHN 114

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+ILR+A A +  G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   G
Sbjct: 115 FGSILRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQG 174

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G   +   P  +     K+ALI+G EGKG+ P  ++    M  + M G +++LN S
Sbjct: 175 FWVFGTDMNG-TPSHKWNTAGKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNAS 233

Query: 267 NAAAVALY 274
            AAAV +Y
Sbjct: 234 VAAAVLMY 241


>gi|146305679|ref|YP_001186144.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145573880|gb|ABP83412.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas mendocina ymp]
          Length = 250

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 120/234 (51%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL LA      R+     L   H  PV     Q +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQHRVPVGHKERQELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++++ L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEAEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q        L++GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLF 238


>gi|74316627|ref|YP_314367.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
 gi|74056122|gb|AAZ96562.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
          Length = 254

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 18/247 (7%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQL---LATKNALARLDWDANLPH-----PFPVK 94
           + +P    +YG H V A L +    + ++   L  ++A AR     +L H        + 
Sbjct: 2   SEKPAERLIYGFHAVLARLRHDPAGVLEIYLDLTRRDARAR-----DLVHQARDSGVKLA 56

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            V    + ++VGK A HQG+     P+     L   L+++    LL++LD V DPHN+GA
Sbjct: 57  QVEADRLGRLVGKAAKHQGVVARVKPVALTHSLDEVLESIEGPPLLVILDGVTDPHNLGA 116

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILRSA AF    +I  K  +   +A + K ASGA + +PY+ ++NL   ++++       
Sbjct: 117 ILRSADAFGAHAVIAPKDNAVGINATVEKVASGAADTVPYLMVTNLARTIEELKEHDIWV 176

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           I    D ++PL        +A +LGAEG G+R   ++    +A + + G +++LNVS +A
Sbjct: 177 IAADMDGEQPLSGIDVRSGVAWVLGAEGAGIRRLVKQRCDQVARIPIGGTVESLNVSVSA 236

Query: 270 AVALYIT 276
           A+ LY T
Sbjct: 237 ALCLYET 243


>gi|254497333|ref|ZP_05110138.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254353445|gb|EET12175.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 250

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 17/238 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDK 103
           F+YGVH VSA L NP R   +L  +++   R+D       D  +     ++ +  Q +++
Sbjct: 5   FVYGVHAVSALLANPHRTTKKLFVSQD---RVDKRLQDLVDKAVQARIGIEKLSTQQMNQ 61

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               E  HQG+    + L       L   L++ ++  L+++LD + DPHN+GA LR+A A
Sbjct: 62  RFA-EFNHQGIVASASALPDYNESHLRALLESSKSPGLILILDGITDPHNLGACLRTADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++  K  S S + V++K A GA E +P +R++NL  ++  +   G    G + ++
Sbjct: 121 TGVDFVVIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSMDLLKEQGVWIYGAAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L Q      IAL++GAEG+GLR  T+E    +  L M G + +LNVS A  V+LY
Sbjct: 181 EHSLYQVDCRGTIALVMGAEGEGLRRLTREHCDGLFSLPMSGSVDSLNVSVATGVSLY 238


>gi|17545948|ref|NP_519350.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|52783318|sp|Q8Y016|RLMB_RALSO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|17428243|emb|CAD14931.1| probable 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna
           gm2251 2'-o-methyltransferase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 249

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106
            L G H V+A L + +R I ++    N   R   D         V+ +P   + +  I G
Sbjct: 6   LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+     AL  A  L   LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+
Sbjct: 185 RADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLF 237


>gi|83747961|ref|ZP_00944992.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
 gi|207723179|ref|YP_002253578.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           MolK2]
 gi|207743429|ref|YP_002259821.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           IPO1609]
 gi|83725379|gb|EAP72526.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
 gi|206588373|emb|CAQ35336.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           MolK2]
 gi|206594826|emb|CAQ61753.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           IPO1609]
          Length = 249

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 124/233 (53%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D         V+ +P   + +  I G
Sbjct: 6   LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+     AL  A  L   LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIDGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+
Sbjct: 185 QADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLF 237


>gi|299067280|emb|CBJ38477.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 249

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPP--QTIDKIVG 106
            L G H V+A L + +R I ++    N   R   D         V+ +P   + +  I G
Sbjct: 6   LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+     AL  A  L   LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+
Sbjct: 185 RADFKGPIALVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLF 237


>gi|24378679|ref|NP_720634.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
 gi|24376542|gb|AAN57940.1|AE014868_2 putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
          Length = 248

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/244 (34%), Positives = 129/244 (52%), Gaps = 14/244 (5%)

Query: 41  RHTSQPENL-FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTV 96
           R+    EN   +YGVH V  +L  N   K++    L  KN     D  A      P+   
Sbjct: 2   RYKDFTENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAE--KKVPISWT 59

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150
           P +T+  +  K AVHQG  L  +       + +       ++ LL++LD +NDPHN G+I
Sbjct: 60  PKKTLSDMT-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A +  GII TK  +   + V+AK+++GA+EHIP  R++NL  AL K+ + GF   
Sbjct: 119 LRTADATNVTGIIITKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIF 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   +   P  Q   + K+ALI+G EG+G+    ++    M  + M G +++LN S AAA
Sbjct: 179 GTDMNG-TPSTQWNTSGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAA 237

Query: 271 VALY 274
           + +Y
Sbjct: 238 ILMY 241


>gi|68171778|ref|ZP_00545123.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67998803|gb|EAM85510.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 218

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 119/217 (54%), Gaps = 18/217 (8%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           NN   KI +L   KN                +K V P  I+ ++   + HQG+AL+ + +
Sbjct: 4   NNEISKILRLCKQKN--------------INLKQVNPNYINSVLPHNSNHQGIALKASVI 49

Query: 122 LSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            S T++ V N    S  +++LD V D HN+G+I+RSAV F+ D II     SPSE+  ++
Sbjct: 50  DSTTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAVCFNVDAIILPYHNSPSENCGMS 109

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K++SGA++ IP + + N+ + ++ +   G+   G  +   + L +   + K  +I G+E 
Sbjct: 110 KTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAKEGEFLHKTKLDSKKLIIFGSED 169

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           KG+R  T+E    +  + +   I +LNVSNAAAVALY
Sbjct: 170 KGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALY 206


>gi|220934084|ref|YP_002512983.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995394|gb|ACL71996.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 248

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 14/242 (5%)

Query: 44  SQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
           S+P+  FL+G+H V AAL     P   ++     K+A  R   DA       V+ V  Q 
Sbjct: 2   SEPQ--FLFGLHAVLAALTRKPTPVTTLWVDAGRKDARMREILDAARKAGVTVERVDAQA 59

Query: 101 IDKIVGKEAVHQGLALE----TAPLLS----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           ++++    A HQG+  E      P ++    P L     S LL+VLD V DPHN+GA LR
Sbjct: 60  LERLC-PGARHQGVVAERIQEAGPEITEADLPNLVGRVASPLLLVLDGVTDPHNLGACLR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A   D +I  +  +   + V  K ASGA E +P+++++NL   L ++   G   IG 
Sbjct: 119 TADAAGVDAVIVPRDRAAGLTPVARKVASGAAEVVPFVQVTNLARTLDQLKQAGVWIIGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S D+ + L Q      IA+++GAEG+G+R  T+E    + ++ M G + +LNVS A  V 
Sbjct: 179 SGDAPQTLYQADLKGPIAIVMGAEGQGMRRLTRERCDLLVNIPMQGSVSSLNVSVATGVC 238

Query: 273 LY 274
           L+
Sbjct: 239 LF 240


>gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
 gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
          Length = 251

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 10/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++ Q+ LA   +  R+     L     V     +  +  V  E 
Sbjct: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWVEG 65

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    + LL+VLD V DPHN+GA LRSA A     +
Sbjct: 66  VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + +++  + +
Sbjct: 126 IVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSIYD 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q++    I LI+GAEGKG+R  T+E    + HL M G + +LNVS A  V L+  Q  
Sbjct: 186 QDLTGPTI-LIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQ 242


>gi|241662769|ref|YP_002981129.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|240864796|gb|ACS62457.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
           12D]
          Length = 250

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKE 108
            L G H V+A L + ++ I ++    N   R   D         V+ +P    D++ G  
Sbjct: 6   LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADA-DRLRGIA 64

Query: 109 AV--HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  +   L     L   LD +  + LL+VLD V DPHN+GA LR A A     
Sbjct: 65  GTDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q      IA+++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+
Sbjct: 185 QADFKGPIAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLF 237


>gi|52840348|ref|YP_094147.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627459|gb|AAU26200.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 258

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 27/243 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT----VPPQTIDKIV 105
           ++YG+H VSA L NP R I +L   ++   R+D      H F VK     VP   I+K+ 
Sbjct: 14  YVYGLHAVSALLANPHRMIKKLFVNQD---RID---KRLHEFLVKAENAHVP---IEKLS 64

Query: 106 GK-------EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            +       E  HQG+    + L       L   L+  +   L+++LD + DPHN+GA L
Sbjct: 65  AQKMNQQFSEFTHQGVVALASALAEYGESDLVTLLEKSKKPVLILILDGITDPHNLGACL 124

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++  K  S S + V++K A GA E IP +R++NL  A+  +   G    G
Sbjct: 125 RSADATGVDFVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFG 184

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + +++  L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V
Sbjct: 185 AAGEAENLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGV 244

Query: 272 ALY 274
           +LY
Sbjct: 245 SLY 247


>gi|319786532|ref|YP_004146007.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465044|gb|ADV26776.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 248

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 128/239 (53%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++A+ N +  + ++L   +A    L  ++  A   +   V+ V  Q +D
Sbjct: 4   QNQWVVGVNAVASAIENDAEHVREVLVDSSARNPRLVEIEEQAR-RYGIEVRKVATQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            I G    HQG+A   A         L+  ++A     LL+VLD V DPHN+GA LRSA+
Sbjct: 63  GI-GGNVRHQGVAARYAAAKTWGEGELAGLVEAADGKALLLVLDGVQDPHNLGACLRSAL 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  +  S   +A + K+++GA + +P ++++NL   L+++   G    GL+ +
Sbjct: 122 AAGATAVVIPRDKSAPVNATVRKTSAGAADRLPVVQVTNLARTLRELQKQGVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + L        +AL+LG E  GLR  T+ET   +  + MPG +++LNVS AA V L+
Sbjct: 182 VDETLYGVDLKGNVALVLGGEADGLRRLTRETCDGLVRIPMPGDVESLNVSVAAGVCLF 240


>gi|256372653|ref|YP_003110477.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009237|gb|ACU54804.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 251

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 112/184 (60%), Gaps = 2/184 (1%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV+ +PP+  +++   E VHQG+  +  P++   LD + +  LL+V+DH+ DPHN+GA+
Sbjct: 59  VPVELLPPERFERVARTE-VHQGVLADCDPVVDVGLDGLADGSLLVVVDHLEDPHNLGAV 117

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA AF  DG++  +  S   +  + K A+G +E + +  +S++  AL+++ + G  ++
Sbjct: 118 LRSAAAFGADGVVLPRYRSVPLTPTVTKVAAGGVEWLRFALVSSIPAALRRLRARGVWSV 177

Query: 211 GLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           GL +D+   +    +  +++AL++GAEG+GL P  +      A + +   + +LN S AA
Sbjct: 178 GLDADAATSVFSLTLATERLALVVGAEGRGLAPLVRRGVDVTAAIPLAATVASLNASVAA 237

Query: 270 AVAL 273
           ++AL
Sbjct: 238 SIAL 241


>gi|56476097|ref|YP_157686.1| tRNA/rRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
 gi|56312140|emb|CAI06785.1| tRNA/RRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
          Length = 244

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 9/236 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQT--IDK 103
           E+  +YG H V   L      +F+L L+ +   AR      L     V+ +  +   +D 
Sbjct: 2   ESRLIYGFHAVLGKLRRDPESVFELYLSAQRTDARAKDVVRLAESQNVRLIQAEAERLDG 61

Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +VG    HQG+            L+  L+ +  + L++VLD V DPHN+GA LR A A  
Sbjct: 62  MVGTRR-HQGVVARVDAKSRELKLADVLEVLEENALILVLDGVQDPHNLGACLRVADAVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              ++  K  +   +A   K ASGA + +PY+ ++NL  AL++M   G   +G + +++K
Sbjct: 121 AHAVVAPKDRAVGLNATAIKVASGAADSVPYVTVTNLARALREMQEAGIWVVGAAGEAEK 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +  +   +A +LGAEG GLR  T+ET   +A + M G +++LNVS A+ + L+
Sbjct: 181 SVYEVDQKGPVAWVLGAEGDGLRRLTRETCDELARIPMLGTVESLNVSVASGICLF 236


>gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 9/236 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103
           +N  ++G H V++ L + +  + ++        R   D   A       +     Q +DK
Sbjct: 2   KNKVIFGFHAVTSRLRHEASSVEEIYVDSERSDRRMQDLLKAAKAAGIRIIAADSQRLDK 61

Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +VG    HQG+    APL     L   LD++  + LL+VLD + DPHN+GA LR A +  
Sbjct: 62  MVGTRR-HQGVVAMAAPLSLARNLDELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A + K ASGA E +PYI ++NL   L+++       +G + DS K
Sbjct: 121 AHAVIAPKDRSAGINATVEKVASGAAETVPYITVTNLARTLRQLKERDIWVVGTADDSDK 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L +       A ++G+EG+G+R  T+ET   +  + M G +++LN+S A+ + LY
Sbjct: 181 SLYEPDYAGGTAFVMGSEGEGMRRLTKETCDELVAIPMFGSVESLNISVASGICLY 236


>gi|119897231|ref|YP_932444.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
 gi|119669644|emb|CAL93557.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
          Length = 254

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106
            +YG H VSA L +    + ++ L+     AR+            + VP +   +D +VG
Sbjct: 12  LIYGFHAVSAKLRHAPEAVLEVYLSGDRKDARVKKFLATAEAIGTRIVPSEHERLDALVG 71

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+     A      L+  LD +  + L++VLD V DPHN+GA LR A A     
Sbjct: 72  TRR-HQGVVARIDATRREIKLADVLDNLDENALILVLDGVQDPHNLGACLRVADAAGAHA 130

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  +   +A  AK ASGA + +PYI ++NL  AL++M   G   +G + +++K + 
Sbjct: 131 VVAPKDRAVGLNATAAKVASGAADTVPYITVTNLARALREMQEAGVWVVGAAGEAEKSVY 190

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q  +   +A +LGAEG GLR  T++T   +A + M G +++LNVS A+ + L+
Sbjct: 191 QVDQRGPLAWVLGAEGDGLRRLTRDTCDELAQIPMHGSVESLNVSVASGICLF 243


>gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
           fluorescens SBW25]
 gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
           fluorescens SBW25]
          Length = 251

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 10/233 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++ Q+ LA   +  R+     L     V     +  +  V  E 
Sbjct: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWVEG 65

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    + LL+VLD V DPHN+GA LRSA A     +
Sbjct: 66  VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + +++  + +
Sbjct: 126 IVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSIYD 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q++    I LI+GAEGKG+R  T+E    + HL M G + +LNVS A  V L+
Sbjct: 186 QDLTGPTI-LIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLF 237


>gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
 gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
          Length = 245

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 13/235 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           L+G+H V+ AL   +++I ++L  K      + RL  D  L     ++ V  + ++++V 
Sbjct: 6   LFGIHAVNTALKRDAQRIHKILIMKGRQDAKMQRL-IDTALDLRIRIEQVSKRELEELV- 63

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K AVHQG+     P+       L   LD +     L++LD V DPHN+GA LR+A A   
Sbjct: 64  KGAVHQGVVALCKPIQTYNEQYLDKLLDQLEEPPFLLILDGVTDPHNLGACLRTADAAGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++  K  S   +A  AK A GA E +PY+ ++NL   L+ +   G  T G + ++   
Sbjct: 124 QAVVAPKDKSAPLNATAAKVACGAAESVPYVLVTNLARTLKSLQERGVWTTGTAGETDLD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + Q      +ALI+GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 184 IYQANLKGPMALIMGAEGQGMRRLTREHCDQLVKIPMAGEVSSLNVSVATGICLF 238


>gi|78779235|ref|YP_397347.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712734|gb|ABB49911.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9312]
          Length = 336

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 105/173 (60%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+AL+ A   + +L+ +     RN+   +++ LD + DPHN+GAI+RSA AF C G
Sbjct: 159 ASHQGVALQLACSKTISLEKLIDFSKRNTSNPIILALDGITDPHNVGAIIRSAEAFDCKG 218

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +R S   +  +AK A+GALEH+P  R+ NL  AL+++   GF  IGLS D +  + 
Sbjct: 219 IIIPQRRSAGLTGTVAKVAAGALEHLPVSRVVNLNRALEELKKNGFMVIGLSGDGQLSIS 278

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +   + +I+GAE KG+   TQ+    +  + + G   +LN S AAA++L+
Sbjct: 279 KFHEKTPLVVIVGAEDKGISLLTQKKCDFLLKIPLKGKTSSLNASVAAAISLF 331


>gi|254492112|ref|ZP_05105287.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
           thiooxidans DMS010]
 gi|224462664|gb|EEF78938.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
           thiooxydans DMS010]
          Length = 246

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H V AAL+ P  +I ++ LA      R+D    A       V      T+DKI  
Sbjct: 5   VIFGLHAVQAALDVPVSRIKEIWLAADRQDQRVDALLKAAEQQGVVVHKAERDTLDKI-A 63

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG A    PL       L   ++++    LL++LD V DPHN+GA LR+A A   
Sbjct: 64  PNVQHQGCAARCKPLESLDEKGLMTLVESLNEPALLLILDGVQDPHNLGACLRTAEAAGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A   K +SGA E +P+ +++NL+  ++++   G   +G S DS+  
Sbjct: 124 HAVIAPKDRASGLTATAVKISSGAAERVPFAQVTNLSRLMRELQDAGVWLVGTSGDSELS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +A++LGAEGKG+R  T++    + ++ M G  ++LNVS AA V LY
Sbjct: 184 LFQAELKGSMAIVLGAEGKGIRRLTRDNCDQVVYIPMQGEAESLNVSVAAGVCLY 238


>gi|260584968|ref|ZP_05852712.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260157398|gb|EEW92470.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 282

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 15/250 (6%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPF 91
           +  +S    Q    F+YG H V  AL  P R     L  + AL+  +     D    H  
Sbjct: 30  YTPESSSNEQESTDFVYGRHAVREALQQPER--VNKLWVQEALSGKEITPIIDLAKEHRI 87

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            ++ VP   +  +VG E VHQG+    A     TL+ V            +++LD + DP
Sbjct: 88  QIQNVPKAKLQDLVG-EVVHQGVVASIAAYEYATLEDVFEKAQEKNEDPFILILDGIEDP 146

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           +N+G+ILR+A A    GII  KR S S ++ +AK+++GA+EH+P +R++NLT  ++++  
Sbjct: 147 YNLGSILRTADATGVHGIIIPKRRSVSLTSTVAKASTGAIEHVPVVRVTNLTQTIEQLKE 206

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G         +   K   IA+++G EGKG+    ++    M  + M G +++LN
Sbjct: 207 RGVWVFGTDMKGTDYRQWNTKG-PIAIVMGNEGKGVSRIVKDAVDEMITIPMTGHVQSLN 265

Query: 265 VSNAAAVALY 274
            S A+A+ +Y
Sbjct: 266 ASVASALMMY 275


>gi|152983804|ref|YP_001350984.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
 gi|150958962|gb|ABR80987.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
          Length = 248

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 120/234 (51%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL LA      R+     L   F  PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+    + LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERAEGAPLLLALDGVTDPHNLGACLRTADAAGVL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+
Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238


>gi|325567613|ref|ZP_08144280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159046|gb|EGC71192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           casseliflavus ATCC 12755]
          Length = 279

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 15/237 (6%)

Query: 47  ENLFLYGVHTVSAAL-NNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+ F++G H V+ AL      K+F    A    + RL   A      PVK VP Q +D +
Sbjct: 38  EDNFVFGYHAVAEALKEGRGNKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM 96

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              + VHQG+ L   P    TLD +    +   L ++LD++ DPHN G+I+R+A A   D
Sbjct: 97  -SDQGVHQGMILAITPYQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVD 155

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---SSDSK 217
           GII  K  +   + ++ K+++GA+EHIP  R++NLT A+Q++   GF   G     SD +
Sbjct: 156 GIIIPKHRAVGITPIVVKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGSDYR 215

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               Q      + LI+G EG+G+    ++    M  + M G +++LN S AA + +Y
Sbjct: 216 TWNAQ----GAVGLIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMY 268


>gi|257875922|ref|ZP_05655575.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
 gi|257810088|gb|EEV38908.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
          Length = 279

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 15/237 (6%)

Query: 47  ENLFLYGVHTVSAAL-NNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+ F++G H V+ AL      K+F    A    + RL   A      PVK VP Q +D +
Sbjct: 38  EDNFVFGYHAVAEALKEGRGNKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM 96

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              + VHQG+ L   P    TLD +    +   L ++LD++ DPHN G+I+R+A A   D
Sbjct: 97  -SNQGVHQGMILAITPYQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVD 155

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---SSDSK 217
           GII  K  +   + ++ K+++GA+EHIP  R++NLT A+Q++   GF   G     SD +
Sbjct: 156 GIIIPKHRAVGITPIVVKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGSDYR 215

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               Q      + LI+G EG+G+    ++    M  + M G +++LN S AA + +Y
Sbjct: 216 TWNAQ----GAVGLIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMY 268


>gi|116053085|ref|YP_793404.1| TrmH family RNA methyltransferase , group 3 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588306|gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 248

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL LA      R+     L   F  PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+
Sbjct: 185 YQLDLTGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238


>gi|257866303|ref|ZP_05645956.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257873181|ref|ZP_05652834.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
 gi|257800261|gb|EEV29289.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257807345|gb|EEV36167.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
          Length = 279

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 125/237 (52%), Gaps = 15/237 (6%)

Query: 47  ENLFLYGVHTVSAAL-NNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+ F++G H V+ AL      K+F    A    + RL   A      PVK VP Q +D +
Sbjct: 38  EDNFVFGYHAVAEALKEGRGNKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM 96

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              + VHQG+ L   P    TLD +    +   L ++LD++ DPHN G+I+R+A A   D
Sbjct: 97  -SDQGVHQGMILAITPYQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVD 155

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---SSDSK 217
           GII  K  +   + ++ K+++GA+EHIP  R++NLT A+Q++   GF   G     SD +
Sbjct: 156 GIIIPKHRAVGITPIVVKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGSDYR 215

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               Q      + LI+G EG+G+    ++    M  + M G +++LN S AA + +Y
Sbjct: 216 TWNAQ----GAVGLIIGNEGRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMY 268


>gi|15600129|ref|NP_253623.1| rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|218894031|ref|YP_002442900.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|254244173|ref|ZP_04937495.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
 gi|296391776|ref|ZP_06881251.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1]
 gi|313109938|ref|ZP_07795866.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
 gi|52783327|sp|Q9HUM8|RLMB_PSEAE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9951215|gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|126197551|gb|EAZ61614.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
 gi|218774259|emb|CAW30076.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|310882368|gb|EFQ40962.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
          Length = 248

 Score =  122 bits (305), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL LA      R+     L   F  PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+
Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238


>gi|107104035|ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2]
 gi|254238349|ref|ZP_04931672.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
 gi|126170280|gb|EAZ55791.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
          Length = 248

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL LA      R+     L   F  PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERGEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+
Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLF 238


>gi|307608839|emb|CBW98231.1| hypothetical protein LPW_00911 [Legionella pneumophila 130b]
          Length = 249

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 23/241 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100
           ++YG+H VSA L NP R I +L   ++ +     D  L H F         P++ +  Q 
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRI-----DKRL-HEFLIKAENAHVPIEKLSAQK 58

Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +++    E  HQG+    + L       L   L+  +   L+++LD + DPHN+GA LRS
Sbjct: 59  MNQQF-SEFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRS 117

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   D ++  K  S S + V++K A GA E IP +R++NL  A+  +   G    G +
Sbjct: 118 ADATGVDFVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAA 177

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +++  L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+L
Sbjct: 178 GEAEHLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSL 237

Query: 274 Y 274
           Y
Sbjct: 238 Y 238


>gi|222152461|ref|YP_002561636.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113272|emb|CAR40803.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
          Length = 251

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 138/247 (55%), Gaps = 18/247 (7%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF--QLLATKN--ALARLDWDANLPHPFPV 93
           K +H  +  ++ +YGVH V+ +LN N   K++  + L  KN  A+  L  +  +     +
Sbjct: 5   KDKHLQETTDM-VYGVHAVTESLNANTGNKLYIQEDLRGKNVDAIKALATEKKVS----I 59

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHNI 147
              P +T+ ++  + AVHQG  L  +      L D ++ ++     L+M+LD + DPHN 
Sbjct: 60  SWTPKKTLSEMT-EGAVHQGFVLRVSEYAYAELADILKKAESEENPLIMILDGITDPHNF 118

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A    GII  K  +   + V++K+++GA+EH+P  R++NL+  L K+   GF
Sbjct: 119 GSILRTADATKVCGIIIPKHRAVGVTPVVSKTSTGAVEHLPIARVTNLSQTLDKLKEAGF 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G   D   P+++   + K+ALI+G+EGKG+    ++    M  + M G +++LN S 
Sbjct: 179 WIFGTDMDG-TPVQKWNTSGKLALIIGSEGKGISHNIKKQVDEMITIPMDGHVQSLNASV 237

Query: 268 AAAVALY 274
           AAAV +Y
Sbjct: 238 AAAVLMY 244


>gi|315640328|ref|ZP_07895445.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           italicus DSM 15952]
 gi|315483990|gb|EFU74469.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           italicus DSM 15952]
          Length = 278

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 130/256 (50%), Gaps = 11/256 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWD 84
           N +D +K      K     +    F++G H V  AL      K+F L   +    R+D  
Sbjct: 14  NKKDTRKQTVRKDKEMTAEELAENFVFGHHAVVEALKKGRGNKLFLLEDARGE--RIDEV 71

Query: 85  ANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVL 138
             L      PVK VP Q +++   ++ VHQG+ L   P    +LD +          ++L
Sbjct: 72  KELSKEQSVPVKWVPKQKLEQY-SQQGVHQGMVLAITPYEYLSLDELLAKSPEKPFFIIL 130

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D++ DPHN G+ILR+A A   DGII  K  +   + V+ K+++GA+EH+P  R++NL+ A
Sbjct: 131 DNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHVPIARVTNLSQA 190

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +Q +   GF T G + +         +   IALI+G EG+G+    +++   +  + M G
Sbjct: 191 VQTLKERGFWTFGTAMEGTNYRSWNTQG-AIALIIGNEGRGMSEGLKKSVDELLTIPMVG 249

Query: 259 IIKALNVSNAAAVALY 274
            +++LN S AA + +Y
Sbjct: 250 HVQSLNASVAAGLLMY 265


>gi|77456761|ref|YP_346266.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens Pf0-1]
 gi|77380764|gb|ABA72277.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 255

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 120/237 (50%), Gaps = 8/237 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++ Q+ LA      R+     L +   V+    +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKQIWLAESRNDPRVQTLIELANENRVQIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    + LL+VLD V DPHN+GA LRSA A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + +++  +  
Sbjct: 127 IVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSIYD 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +       LI+GAEGKG+R  T+E    + HL M G + +LNVS A  V L+  Q  
Sbjct: 187 QDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQ 243


>gi|290579663|ref|YP_003484055.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
 gi|254996562|dbj|BAH87163.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
          Length = 248

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 14/244 (5%)

Query: 41  RHTSQPENL-FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTV 96
           R+    EN   +YGVH V  +L  N   K++    L  KN     D  A      P+   
Sbjct: 2   RYKDFTENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAE--KKVPISWT 59

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150
           P +T+  +  K AVHQG  L  +       + +       ++ LL++LD +NDPHN G+I
Sbjct: 60  PKKTLSDMT-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A +  GII  K  +   + V+AK+++GA+EHIP  R++NL  AL K+ + GF   
Sbjct: 119 LRTADATNVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIF 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   +   P  Q   + K+ALI+G EG+G+    ++    M  + M G +++LN S AAA
Sbjct: 179 GTDMNG-TPSTQWNTSGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAA 237

Query: 271 VALY 274
           + +Y
Sbjct: 238 ILMY 241


>gi|329769072|ref|ZP_08260494.1| RNA methyltransferase [Gemella sanguinis M325]
 gi|328839563|gb|EGF89139.1| RNA methyltransferase [Gemella sanguinis M325]
          Length = 271

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 18/267 (6%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNP---SRKIFQLLAT 74
           +++N+  YK+++  N++ +   Q     P+   + G + +  A+ +    ++ +FQ    
Sbjct: 1   MKKNNNYYKELRKKNKEQKAPVQNTELDPDKEVIAGRNAILEAIKSGREINKILFQEGIE 60

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--- 131
           K  L  +   AN       + VP + +D    +   HQG+    AP     LD V N   
Sbjct: 61  KGRLKSIFAIAN-EKKIVCQEVPKRKLDNTTTER--HQGVIAFVAPYNYFELDEVLNKLD 117

Query: 132 ---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              S  L++LDH+ DPHN+GAI+R+A A    GII  KR +   S    K+++GA+EH+P
Sbjct: 118 INKSTTLLILDHIEDPHNLGAIIRTAEASGVKGIIIPKRRAAVVSQTAVKASAGAIEHMP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247
            IR+S+LTDA++K+   GF   G +   +     +I  D  +A+++G EG+G+     + 
Sbjct: 178 VIRVSSLTDAIKKLKEKGFWIAGTTLAERSEEYTKIAKDVPLAIVIGNEGEGMSKVVTKE 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              + HL M G I++LN S AA + +Y
Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMY 264


>gi|309782307|ref|ZP_07677034.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
           5_7_47FAA]
 gi|308918925|gb|EFP64595.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
           5_7_47FAA]
          Length = 250

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKE 108
            L G H V+A L + ++ I ++    N   R   D         V+ +P    D++ G  
Sbjct: 6   LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADA-DRLRGIA 64

Query: 109 AV--HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  +   L     L   LD +  + LL+VLD V DPHN+GA LR A A     
Sbjct: 65  GTDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q       A+++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+
Sbjct: 185 QADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLF 237


>gi|187928166|ref|YP_001898653.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|187725056|gb|ACD26221.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
           12J]
          Length = 250

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKE 108
            L G H V+A L + ++ I ++    N   R   D         V+ +P    D++ G  
Sbjct: 6   LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADA-DRLRGIA 64

Query: 109 AV--HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  +   L     L   LD +  + LL+VLD V DPHN+GA LR A A     
Sbjct: 65  GTDRHQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q       A+++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+
Sbjct: 185 QADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLF 237


>gi|54293055|ref|YP_125470.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
 gi|53752887|emb|CAH14322.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
          Length = 249

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 23/241 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100
           ++YG+H VSA L NP R I +L   ++ +     D  L H F         P++ +  Q 
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRI-----DKRL-HEFLIKAENAHVPIEKLSAQK 58

Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +++    E  HQG+    + L       L   L+  +   L+++LD + DPHN+GA LRS
Sbjct: 59  MNQQF-SEFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRS 117

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   D ++  K  S S + V++K A GA E IP +R++NL  A+  +   G    G +
Sbjct: 118 ADATGVDFVLIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAA 177

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +++  L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+L
Sbjct: 178 GEAEHLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSL 237

Query: 274 Y 274
           Y
Sbjct: 238 Y 238


>gi|322374192|ref|ZP_08048725.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C150]
 gi|321276897|gb|EFX53969.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C150]
          Length = 247

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 123/234 (52%), Gaps = 13/234 (5%)

Query: 50  FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YGVH V+ +L  N   K++    L  KN  A     A       +   P +T+  + G
Sbjct: 11  IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      LS  +D V   +  L+++LD +NDPHN G+ILR+A A    
Sbjct: 69  G-AVHQGFVLRVSEFAYSELSDIMDKVEQEENPLILILDGLNDPHNFGSILRTADATQVT 127

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G   D   P 
Sbjct: 128 GVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTDMDG-TPS 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     ++ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y
Sbjct: 187 HKWNTAGRLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMY 240


>gi|330816741|ref|YP_004360446.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
           BSR3]
 gi|327369134|gb|AEA60490.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
           BSR3]
          Length = 249

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            LYG H V+A L + +  + ++L   T+     +D+ A             +T    +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMIDFLATAKEAGVRLIAADETRLWGLAH 65

Query: 108 EAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+   +E  PL   L+  LD ++   LL+VLD V DPHN+GA LR A A     I
Sbjct: 66  TERHQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHAI 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG + D+   L +
Sbjct: 126 IAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAGASLYE 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  +AL++GAEG+G+R  T++T   + ++ M G +++LNVS A+ V LY
Sbjct: 186 TKLDGPVALVMGAEGEGMRRLTRDTCDDVMNIPMAGSVESLNVSVASGVCLY 237


>gi|209515693|ref|ZP_03264557.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
 gi|209503929|gb|EEA03921.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
          Length = 247

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+      L     L+  LD +  S L++VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARAGDLPLAQNLAELLDGITGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + D++K +     
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAEKSVYDTEL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL+LGAEG+G+R  T+ET   + H+ M G +++LNVS A+ V L+
Sbjct: 189 DGPVALVLGAEGEGMRRLTRETCDVVMHIPMAGTVESLNVSVASGVCLF 237


>gi|148358250|ref|YP_001249457.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296105603|ref|YP_003617303.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|148280023|gb|ABQ54111.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|295647504|gb|ADG23351.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
          Length = 249

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 27/243 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT----VPPQTIDKIV 105
           ++YG+H VSA L NP R I +L   ++ +     D  L H F VK     VP   I+K+ 
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRI-----DKRL-HEFLVKAENAHVP---IEKLS 55

Query: 106 GK-------EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            +       E  HQG+    + L       L   L+  +   L+++LD + DPHN+GA L
Sbjct: 56  AQKMNQQFSEFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACL 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++  K  S + + V++K A GA E IP +R++NL  A+  +   G    G
Sbjct: 116 RSADATGVDFVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + +++  L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V
Sbjct: 176 AAGEAEHLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGV 235

Query: 272 ALY 274
           +LY
Sbjct: 236 SLY 238


>gi|330501633|ref|YP_004378502.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328915919|gb|AEB56750.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 250

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 119/234 (50%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL LA      R+     L   +  PV     Q +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQNRVPVGHKERQELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + + ++ L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEVEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q        L++GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLF 238


>gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio
           salmonicida LFI1238]
 gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio
           salmonicida LFI1238]
          Length = 247

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQT 100
           N FL+G+H   A L     +  ++   K    R D D  LP         F ++ +P +T
Sbjct: 3   NEFLFGIHATKAVLERDPARFIEIFVLK---GRED-DRLLPIITELGELGFKIQELPRKT 58

Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +D    K A HQG+     P        L   +D   N  L +VLD V DPHN+GA LR+
Sbjct: 59  LDD-KAKGANHQGIIARVTPAKQLNERDLDDIMDKTENP-LFLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I  K  S S +A ++K A GA E +P +R++NL   ++ +   G   +G +
Sbjct: 117 ADGAGVAAVIVPKDKSASMTATVSKVACGAAEMVPLVRVTNLARTMRALQEKGVWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ K + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L
Sbjct: 177 GEATKDVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVTSLNVSVASGVCL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|313889615|ref|ZP_07823259.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122042|gb|EFR45137.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 248

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YGVH V+ +L  N   K++  + L  KN     D   N      +   P +T+  +
Sbjct: 10  NDMVYGVHAVTESLRANTGNKLYIQEDLRGKNVDIIKDLARN--KKVSISWAPKKTLSDM 67

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      L+ +        + L+++LD + DPHN G+ILR+A A  
Sbjct: 68  T-EGAVHQGFVLRVSAFAYSELETLIVKAEKEENPLILILDGLTDPHNFGSILRTADATK 126

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EH+P  R++NL+ AL K+   GF   G   D   
Sbjct: 127 VSGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDKLKEAGFWIFGTDMDG-T 185

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+++   + K+ALI+G+EGKG+    ++    M  + M G +++LN   AAAV +Y    
Sbjct: 186 PVQKWNTSGKLALIIGSEGKGISTNIKKQVDEMITIPMGGHVQSLNAGVAAAVLMYEVFR 245

Query: 279 H 279
           H
Sbjct: 246 H 246


>gi|15603818|ref|NP_246892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|52783323|sp|Q9CJP3|RLMB_PASMU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|12722390|gb|AAK04037.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 245

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/245 (35%), Positives = 123/245 (50%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H VSA LNN   ++ ++ A K           N L RL           ++ V  Q
Sbjct: 5   IYGIHAVSAFLNNAPERLIEVYALKGRDDKRLQPLLNELHRLG--------ITIQFVNRQ 56

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153
           T+DK    E VHQG+     P   L    LD +  +Q   LL+VLD V DPHN+GA LR+
Sbjct: 57  TLDKKAEGE-VHQGIMARVQPAKELNEADLDTLLQNQSNPLLLVLDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL----QKMHSWGFQT 209
           A A     +I  K  S   +A+  K A GA E +P IR++NL   L    QK + W    
Sbjct: 116 ADAAGVCAVIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIW---V 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGEATNTLYQTQLTGGLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232

Query: 270 AVALY 274
            V L+
Sbjct: 233 GVCLF 237


>gi|237654034|ref|YP_002890348.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
 gi|237625281|gb|ACR01971.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
          Length = 251

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 12/240 (5%)

Query: 46  PENL---FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQ 99
           PEN     +YG H VSA L +    + ++  T   K+A  R            +      
Sbjct: 5   PENTPTRLIYGFHAVSAKLRHAPDSVLEIFLTADRKDARVRKFLAQAESAGVRITQSEGD 64

Query: 100 TIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            +D +VG    HQG+  +         L+  LD++  + L++VLD V DPHN+GA LR A
Sbjct: 65  KLDALVGTRR-HQGVVAKVDATRREIKLADVLDSLDENALILVLDGVQDPHNLGACLRVA 123

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     ++  K  +   +A   K ASGA + +PYI ++NL  AL++M   G   +G + 
Sbjct: 124 DAAGAHAVVAPKDRAVGLNATAVKVASGAADTVPYITVTNLARALREMQDAGVWVVGAAG 183

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +++K L    +   +A +LGAEG GLR  T+ET   +A + M G +++LNVS A+ + L+
Sbjct: 184 EAEKTLYGVDQKVPVAWVLGAEGDGLRRLTRETCDELARIPMHGSVESLNVSVASGICLF 243


>gi|54296089|ref|YP_122458.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
 gi|53749874|emb|CAH11255.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
          Length = 249

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 27/243 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT----VPPQTIDKIV 105
           ++YG+H VSA L NP R I +L   ++ +     D  L H F VK     VP   I+K+ 
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRI-----DKRL-HEFLVKAENAHVP---IEKLS 55

Query: 106 GK-------EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            +       E  HQG+    + L       L   L+  +   L+++LD + DPHN+GA L
Sbjct: 56  SQKMNQQFSEFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACL 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++  K  S + + V++K A GA E IP +R++NL  A+  +   G    G
Sbjct: 116 RSADATGVDFVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + +++  L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V
Sbjct: 176 AAGEAEHLLYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGV 235

Query: 272 ALY 274
           +LY
Sbjct: 236 SLY 238


>gi|320547737|ref|ZP_08042021.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           equinus ATCC 9812]
 gi|320447497|gb|EFW88256.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           equinus ATCC 9812]
          Length = 276

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YGVH V+ +L  N   K++    L  KN     D  A       +   P +T++ +
Sbjct: 37  NDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKDLAA--EKKVSISWTPKKTLNDM 94

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  +      LD +        + L+++LD +NDPHN G+ILR+A A +
Sbjct: 95  TNG-AVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILRTADATN 153

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V++K+++GA+EH+P  R++NL+  L K+   GF   G   +   
Sbjct: 154 VTGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNGTS 213

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      K+ALI+G EGKG+ P  ++    M  + M G +++LN S AAAV +Y
Sbjct: 214 SHKWNTSG-KLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMY 268


>gi|312862606|ref|ZP_07722847.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           vestibularis F0396]
 gi|311101866|gb|EFQ60068.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           vestibularis F0396]
          Length = 247

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 122/234 (52%), Gaps = 13/234 (5%)

Query: 50  FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YGVH V+ +L  N   K++    L  KN  A     A       +   P +T+  + G
Sbjct: 11  IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      LS  +D     +  L+++LD +NDPHN G+ILR+A A    
Sbjct: 69  G-AVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRTADATQVT 127

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G   D   P 
Sbjct: 128 GIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTDMDG-TPS 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y
Sbjct: 187 HKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMY 240


>gi|257125181|ref|YP_003163295.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
           C-1013-b]
 gi|257049120|gb|ACV38304.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
           C-1013-b]
          Length = 232

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 86/144 (59%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   +++VLD V DP N GAI+RSA  F  DGII   R S   +  + KS++GA+EH+  
Sbjct: 84  KEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSSTGAIEHVDI 143

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++++N++D + K+  +G+   G  +D +    QE   +K  L+LG+EG G+R K +E   
Sbjct: 144 VKVTNISDTIDKLKKYGYTVYGAEADGQNYYYQENYPEKACLVLGSEGNGMRKKVKEHCD 203

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  +H+ G I +LNVS A  + L
Sbjct: 204 KIVKIHLKGEINSLNVSVAGGIIL 227


>gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 247

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             + G H V  AL NP RK+ ++  T   K  + R +   N+     V     + +DK  
Sbjct: 6   FLIVGQHAVIEALRNPKRKVLKVFLTEESKKNIHRKNPKKNVLEDVKVYFKSKKELDKYT 65

Query: 106 GKEAV-HQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+ + H G   E   +  P L      +N    + +D V DP NIG+++RSA +F  DG
Sbjct: 66  SKDQIMHGGYIAEVEHIDQPDLKEFIKGKNELTFVCIDEVTDPRNIGSLIRSASSFHIDG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R  PS+S ++ K+ASG +EHI    +SN+   L+ +    F   G  +  +K   
Sbjct: 126 LIVKERQFPSDSKLMYKAASGCMEHINIFEVSNINSTLKNLREKNFWVYGFDARGEKDFT 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     K  L+ G+EG G+R  T +       + +   +++LN+SN+AA+  +
Sbjct: 186 EIKWEGKNVLLFGSEGFGMREHTGKYTDFFVKIDINKDVESLNISNSAAIVFH 238


>gi|67924215|ref|ZP_00517655.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
 gi|67853934|gb|EAM49253.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
          Length = 292

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 19/247 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
            T Q ++  +YG H+V AAL +  R++ ++  T     RL +D    +           I
Sbjct: 37  QTEQSDDDLIYGRHSVLAALES-DRQLNRIWITN----RLHYDPRFHNLIQASKAKGAVI 91

Query: 102 DKI-------VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147
           D++       +   A HQG+A + AP     LD +        +  ++++ D ++DPHN+
Sbjct: 92  DEVSVQRLSQITNGANHQGVAAQVAPYNYHDLDGLIAQAKANSDEPVIVIADSISDPHNL 151

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+A A  C G+I  +R +   ++ ++K A+GALE  P  R+ NL+ AL+ + + GF
Sbjct: 152 GAIIRTAEALGCQGMIIPQRRAAGVTSTVSKVAAGALESFPVARVVNLSRALETLKAEGF 211

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G  S+  K L+       I L++G+EG GL   TQ     +  + + G   +LN S 
Sbjct: 212 WIYGTVSEGGKRLQDFNFRGAIGLVIGSEGSGLSLLTQRCCDELVSIPLGGKTPSLNASV 271

Query: 268 AAAVALY 274
           AAA+ LY
Sbjct: 272 AAAINLY 278


>gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 456

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 141/269 (52%), Gaps = 23/269 (8%)

Query: 25  RNHRDYKKMQSFNQKSR-----HTSQP-ENLFLYGVHTVSAAL--NNPSRKIFQLLATKN 76
           R  R  +  + F +K R     H++ P  +  L+G H   AAL    P  +I+     ++
Sbjct: 129 RQDRSDRPDRRFEEKPRGESSSHSADPVADDLLWGRHATQAALEAGRPIHRIWCTSEMRS 188

Query: 77  A--LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------- 127
           A    +L  DA       V+ V    + ++ G  AVHQG+AL+TA   + TLD       
Sbjct: 189 APRFMQLLRDAKSSGVL-VEEVTWARLAQMTGG-AVHQGIALQTA--AADTLDLADLIEG 244

Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             A++ + LL+ LD + DPHN+GAI+RSA A    G++  +R S   +  +AK A+GALE
Sbjct: 245 CAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALE 304

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+P  R+ NL  +L+ +   G++ +GL+ +  + LE+      + ++ G+EG+GL   T+
Sbjct: 305 HLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEADLEGPLVVVTGSEGQGLSMLTR 364

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  + + G+  +LN S A A+ LY
Sbjct: 365 RHCDQLIRIPLRGVTPSLNASVATALCLY 393


>gi|228477774|ref|ZP_04062402.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           salivarius SK126]
 gi|228250466|gb|EEK09680.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           salivarius SK126]
          Length = 247

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 122/234 (52%), Gaps = 13/234 (5%)

Query: 50  FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YGVH V+ +L  N   K++    L  KN  A     A       +   P +T+  + G
Sbjct: 11  IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      LS  +D     +  L+++LD +NDPHN G+ILR+A A    
Sbjct: 69  G-AVHQGFVLRVSEFAYSELSVIMDKAEQEENPLVLILDGLNDPHNFGSILRTADATQVT 127

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G   D   P 
Sbjct: 128 GVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTDMDG-TPS 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y
Sbjct: 187 HKWNTAGKVALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMY 240


>gi|15838579|ref|NP_299267.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|52783331|sp|Q9PC00|RLMB_XYLFA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9107096|gb|AAF84787.1|AE004018_3 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 249

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHP-FPVKTVPPQTID 102
           +N ++ G++ V +++ N +  + ++L    +KN+   LD + N       V+ V  Q +D
Sbjct: 4   KNQWIVGINAVVSSIENDAEHVCEVLVEAGSKNSRL-LDIEENARRKGIEVRRVTTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A +       L   +DA     LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S   +A + K++SGA + +P I + NL  +L+++        GL  +
Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLEGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L       K+AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+
Sbjct: 182 AETSLYALDLRGKVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLF 240


>gi|260912878|ref|ZP_05919364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
           dagmatis ATCC 43325]
 gi|260633256|gb|EEX51421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
           dagmatis ATCC 43325]
          Length = 245

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 122/237 (51%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H VSA LN    ++ ++   K     RL    N  H     V+ V  QT+DK    
Sbjct: 5   IYGIHAVSAFLNTAPERLIEVYVLKGREDKRLQPLLNELHRLGISVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P   L    LDA+   + S LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGIIARIQPAKELNEADLDAILKNKQSPLLLVLDGVTDPHNLGACLRTADAAGVCA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   S++  K A GA E IP IR++NL   L+ + +    W    +G + ++ 
Sbjct: 124 VIVPKDKSAQLSSIARKVACGAAEVIPLIRVTNLARTLRDLQNEHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETLYQAKLTGGLALVMGAEGDGMRRLTRENCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|238027543|ref|YP_002911774.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237876737|gb|ACR29070.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia glumae
           BGR1]
          Length = 250

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 124/239 (51%), Gaps = 21/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG H V+A L + +  + ++L  +    R   D      F ++T     +  I   E 
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMTD------F-LQTAKEAGVRLIAADET 58

Query: 110 VHQGLA-----------LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
              GLA           +E  PL   L+  LD ++   LL+VLD V DPHN+GA LR A 
Sbjct: 59  RLWGLAHTERHQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVAD 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG + D
Sbjct: 119 AAGAHAIIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADD 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L +   +  +AL++GAEG+G+R  T++T   + +L M G +++LNVS A+ V LY
Sbjct: 179 APASLYETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNLPMAGSVESLNVSVASGVCLY 237


>gi|306832717|ref|ZP_07465854.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304425173|gb|EFM28302.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 249

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 127/238 (53%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANL--PHPFPVKTVPPQTID 102
           N  +YGVH V+ +L  N   K++    L  KN    +D   NL       +  +P +T++
Sbjct: 10  NDIVYGVHAVTESLTANTGNKLYIQDDLRGKN----VDKIKNLAAEKKVSISWMPKKTLN 65

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +    AVHQG  L  +      LD +        + L+++LD +NDPHN G+ILR+A A
Sbjct: 66  DMTNG-AVHQGFVLRVSEFAYAELDMILDKAAQEENPLILILDGLNDPHNFGSILRTADA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   + 
Sbjct: 125 TNVTGVIIPKHRAVGVTPVVAKTSTGAIEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y
Sbjct: 185 -TPSHKWNTSGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMY 241


>gi|170730155|ref|YP_001775588.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
 gi|167964948|gb|ACA11958.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
          Length = 249

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHP-FPVKTVPPQTID 102
           +N ++ G++ V +++ N +  + ++L   A+KN+   LD + N       V+ V  Q +D
Sbjct: 4   KNQWIVGINAVVSSIENDAEHVREVLVEAASKNSRL-LDIEENARRKGIEVRRVTTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A +       L   +DA     LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I +K  S   +A + K++SGA + +P I + NL  +L+++        GL+ +
Sbjct: 122 AAGVTAVIISKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  L        +AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+
Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLF 240


>gi|307709243|ref|ZP_07645701.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307619826|gb|EFN98944.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 242

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 125/238 (52%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ AL  N   K++  + L  KN   + +L  +  +   +  K    +  +
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKKLATEKKVSISWTSKKSLSEMTE 63

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                 AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A
Sbjct: 64  G-----AVHQGFVLRVSEFAYSELDQILVKTRQEENPLLLILDGLTDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   + 
Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMY 235


>gi|168491355|ref|ZP_02715498.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574511|gb|EDT95039.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC0288-04]
          Length = 242

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ AL  N   K++  + L  KN   +  L  +  +   +  K    +  +
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTE 63

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                 AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A
Sbjct: 64  G-----AVHQGFVLRVSEFAYSELDYILAKTRQEENSLLLILDGLTDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   + 
Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235


>gi|188584816|ref|YP_001916361.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349503|gb|ACB83773.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 247

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 14/222 (6%)

Query: 65  SRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +RK+F++  +K++      D  L     H   +  VP   +DK+V     HQG+  ET P
Sbjct: 20  NRKVFRIYISKDSNKNFQ-DEMLKLAQQHNINLDKVPLDRLDKMVPTTE-HQGIVAETEP 77

Query: 121 LLSPTLDAV-----RNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                LD V      N+Q    L++LDH+ DP N GAI+R+A A   DG+I  KR S   
Sbjct: 78  FKYSQLDTVLKGFDYNNQKPLTLLILDHLTDPQNFGAIIRTADAVGVDGVIIPKRRSVDV 137

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  + K++SGA EH+P I++SNL   + K+       +G   D  + + +E  N  +AL+
Sbjct: 138 NPTVMKASSGAAEHVPIIKVSNLRQTISKLKEQWIWILGTDIDGDRGIFEENYNIPLALV 197

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G E  G+ P  ++    +A++ M G + +LN S A AV LY
Sbjct: 198 VGNEASGMSPLVKKECDFIANIPMIGRVNSLNASVATAVVLY 239


>gi|226942911|ref|YP_002797984.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
 gi|226717838|gb|ACO77009.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
          Length = 247

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 118/238 (49%), Gaps = 20/238 (8%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTIDK 103
           +YGVH V A L +  R++ +L   +        AL  L   A +     V     + +D+
Sbjct: 7   IYGVHAVEALLRHHPRRVKRLWLAEGRQDPRVQALLELARQARIA----VGQRERRELDE 62

Query: 104 IVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               E VHQG+  E +P       +L   LD      LL+VLD V DPHN+GA LR+A A
Sbjct: 63  WA--EGVHQGVVAEVSPSQVWGEAMLDELLDRCEGPPLLLVLDGVTDPHNLGACLRTADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S + +A + K A GA E +P + ++NL   L+K+   G  T+G + + 
Sbjct: 121 AGAQAVIVPKDKSATLNATVRKVACGAAEVVPLVAVTNLARTLEKLRQRGLWTVGTAGEV 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ L          LI+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 181 EQELYGVDLRGPTVLIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238


>gi|15901307|ref|NP_345911.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|111657374|ref|ZP_01408131.1| hypothetical protein SpneT_02001428 [Streptococcus pneumoniae
           TIGR4]
 gi|221232182|ref|YP_002511335.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225854898|ref|YP_002736410.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae JJA]
 gi|14972946|gb|AAK75551.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae TIGR4]
 gi|220674643|emb|CAR69212.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225722312|gb|ACO18165.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae JJA]
          Length = 242

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ AL  N   K++  + L  KN   +  L  +  +   +  K    +++ 
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSK----KSLS 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +I  + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A
Sbjct: 60  EIT-EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   + 
Sbjct: 119 TNVSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235


>gi|332522981|ref|ZP_08399233.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314245|gb|EGJ27230.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 248

 Score =  119 bits (298), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 17/243 (6%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102
           N  +YGVH V+ +LN N   K++  + L  KN    +D   NL       +   P +T+ 
Sbjct: 10  NDMVYGVHAVTESLNANTGNKLYIQEDLRGKN----VDTIKNLARDKKVSISWAPKKTLS 65

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +  + AVHQG  L  +      L+ +        + L++VLD + DPHN G+ILR+A A
Sbjct: 66  DMT-EGAVHQGFVLRVSAFAYSELETLIAKAEKEENPLILVLDGLTDPHNFGSILRTADA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G++  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   D 
Sbjct: 125 TKVCGVVIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMDG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             P+++   + K+ LI+G+EGKG+    ++    M  + M G +++LN   AAAV +Y  
Sbjct: 185 -TPVQKWNTSGKLVLIIGSEGKGISTNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEV 243

Query: 277 QNH 279
             H
Sbjct: 244 FRH 246


>gi|148984799|ref|ZP_01818052.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP3-BS71]
 gi|148990265|ref|ZP_01821476.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP6-BS73]
 gi|168486152|ref|ZP_02710660.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1087-00]
 gi|225860774|ref|YP_002742283.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230952|ref|ZP_06964633.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254976|ref|ZP_06978562.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502589|ref|YP_003724529.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147922821|gb|EDK73937.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147924404|gb|EDK75494.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP6-BS73]
 gi|183570789|gb|EDT91317.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1087-00]
 gi|225727049|gb|ACO22900.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238184|gb|ADI69315.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301800307|emb|CBW32933.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|327389642|gb|EGE87987.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA04375]
 gi|332073794|gb|EGI84272.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41301]
          Length = 242

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ AL  N   K++  + L  KN   +  L  +  +   +  K    +++ 
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSK----KSLS 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +I  + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A
Sbjct: 60  EIT-EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   + 
Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235


>gi|323126494|gb|ADX23791.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 248

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 133/238 (55%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ +L+ N   K++  + L  KN   + RL  +  +     +   P +T+ 
Sbjct: 10  NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVS----ISWTPKKTLS 65

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++  + AVHQG  L  +      LD +       ++ L+++LD + DPHN+G+ILR+A A
Sbjct: 66  EMT-EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V++K+++GA+EH+P  R++NL+  L K+ + GF T G   + 
Sbjct: 125 TNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTFGTDMNG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 185 -TPSHRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 241


>gi|225857083|ref|YP_002738594.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae P1031]
 gi|225725663|gb|ACO21515.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae P1031]
 gi|332074779|gb|EGI85253.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17545]
          Length = 242

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ AL  N   K++  + L  KN   +  L  +  +   +  K    +++ 
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSK----KSLS 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +I  + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A
Sbjct: 60  EIT-EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   + 
Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235


>gi|302878484|ref|YP_003847048.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
           capsiferriformans ES-2]
 gi|302581273|gb|ADL55284.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
           capsiferriformans ES-2]
          Length = 247

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT--IDKIVG 106
            +YG H V++ +  NP   +   L ++    R+     L     V+ +P  +  +D + G
Sbjct: 6   LIYGFHAVTSRIRQNPEGVMEIYLQSQRQDQRMRDLIALAELSGVRVIPVDSARLDGMAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+A           LS  L+ +    LL+VLD + DPHN+GA LRSA AF    
Sbjct: 66  G-ARHQGVAARVDAARRVQHLSDVLETLTEPPLLLVLDGIQDPHNLGACLRSADAFGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A + K A GA E +PYI ++NL   L+++   G   +G + ++K+ L 
Sbjct: 125 VIAPKDRAVGITATVEKVACGAAETVPYITVTNLARTLRELKDQGIWVVGAAGEAKQDLH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +A++LGAEG+GLR  T ET   +  + M G +++LNVS +  + L+
Sbjct: 185 SFKHTGPLAIVLGAEGEGLRRLTMETCDELVRIPMLGSVESLNVSVSTGICLF 237


>gi|237821018|ref|ZP_04596863.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 251

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|260891370|ref|ZP_05902633.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
           F0254]
 gi|260858753|gb|EEX73253.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
           F0254]
          Length = 233

 Score =  119 bits (297), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 86/144 (59%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   +++VLD V DP N GAI+RSA  F  DGII   R S   +  + KS++GA+EH+  
Sbjct: 84  KEKSIVVVLDQVQDPRNFGAIIRSAECFGVDGIIIQDRNSVKVTETVVKSSTGAIEHVDI 143

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++++N++D + K+  +G+   G  +D +    +E   +K  L+LG+EG G+R K +E   
Sbjct: 144 VKVTNISDTIDKLKKYGYAVYGAEADGQNYYYEENYPEKACLVLGSEGNGMRKKVKEHCD 203

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  +H+ G I +LNVS A  + L
Sbjct: 204 KIVKIHLKGQINSLNVSVAGGIIL 227


>gi|322376908|ref|ZP_08051401.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           M334]
 gi|321282715|gb|EFX59722.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           M334]
          Length = 253

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 13/236 (5%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YGVH V+ AL  N   K++  + L  KN L ++  +        +     +++ +I
Sbjct: 15  NDIVYGVHAVTEALRANTGNKLYLQEDLRGKN-LEKVK-ELATEKKVSISWTSKKSLSEI 72

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 73  T-EGAVHQGFVLRVSEFAYSELDHILAKTHQEENPLLLILDGLTDPHNLGSILRTADATN 131

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V++K+A+GA+EH+P  R++NL+  L K+   GF T G   +   
Sbjct: 132 VSGVIIPKHRAVGVTPVVSKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-T 190

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 191 PCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 246


>gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
 gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
          Length = 370

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 139/272 (51%), Gaps = 17/272 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLA 73
           +DS   +  R  R + +      KS       +  L+G H   AAL    P  +I+    
Sbjct: 40  QDSRSLRSDRQDRRFDEKPRGEAKSHSADSVADDLLWGRHATQAALEAGRPIHRIWCTSE 99

Query: 74  TKNA--LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---- 127
            ++A    +L  DA       V+ V    + ++ G  AVHQG+AL+TA   + TLD    
Sbjct: 100 MRSAPRFMQLLRDAKASGVL-VEEVTWARLAQMTGG-AVHQGIALQTAA--AETLDLSDL 155

Query: 128 -----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                A++ + LL+ LD + DPHN+GAI+RSA A    G++  +R S   +  +AK A+G
Sbjct: 156 IEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAG 215

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALEH+P  R+ NL  +L+ +   G++ +GL+ +  + LE+   +  + ++ G+E +GL  
Sbjct: 216 ALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEVDLDGPLVVVTGSEDQGLSM 275

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            T+     +  + + GI  +LN S A A+ LY
Sbjct: 276 LTRRHCDHLIRIPLRGITPSLNASVATALCLY 307


>gi|307702003|ref|ZP_07639011.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
           NCTC 12261]
 gi|307616648|gb|EFN95837.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
           NCTC 12261]
          Length = 242

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKGEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|332526798|ref|ZP_08402899.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332111200|gb|EGJ11232.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 262

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+     PL     L   LDA   + L++VLD V DPHN+GA LR A       ++  
Sbjct: 86  HQGVVARVTPLATTHSLDDALDAAVGAPLVLVLDGVTDPHNLGACLRVADGAGACAVVAP 145

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K ++   +A +AK ASGA E +PY+ ++NL  +L +M     + IG S D+ K +     
Sbjct: 146 KDHAVGLNATVAKVASGAAETVPYLMVTNLARSLGEMKERDIRVIGTSDDATKTIYDVDL 205

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +AL+LGAEG G+R  T++T   +  + M G +++LNVS AA + LY
Sbjct: 206 RGPVALVLGAEGHGMRQLTRKTCDELVRIPMQGAVESLNVSVAAGICLY 254


>gi|167836767|ref|ZP_02463650.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis MSMB43]
          Length = 247

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   L+  LD +    LL+VLD V DPHN+GA LR A A     II  
Sbjct: 69  HQGVVARVEDLPLAQNLAELLDGIEGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L     
Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLYDTKL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 237


>gi|295676348|ref|YP_003604872.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1002]
 gi|295436191|gb|ADG15361.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1002]
          Length = 247

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+      L     L+  LD +  S L++VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARAGDLPLAQNLAELLDGISGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + D++K + +   
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAQKSVYETEL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T+ET   + ++ M G +++LNVS A+ V L+
Sbjct: 189 DGPVALVMGAEGEGMRRLTRETCDVVMNIPMAGTVESLNVSVASGVCLF 237


>gi|322517687|ref|ZP_08070550.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123675|gb|EFX95267.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 247

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 13/234 (5%)

Query: 50  FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YGVH V+ +L  N   K++    L  KN  A     A       +   P +T+  + G
Sbjct: 11  IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +       S  +D     +  L+++LD +NDPHN G+ILR+A A    
Sbjct: 69  G-AVHQGFVLRVSEFAYSDFSVIMDKAEQEENPLILILDGLNDPHNFGSILRTADATQVT 127

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G   D   P 
Sbjct: 128 GVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTDMDG-TPS 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y
Sbjct: 187 HKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLMY 240


>gi|288904447|ref|YP_003429668.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           UCN34]
 gi|306830480|ref|ZP_07463650.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977443|ref|YP_004287159.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731172|emb|CBI12720.1| putative RNA methyltransferase, TrmH family [Streptococcus
           gallolyticus UCN34]
 gi|304427505|gb|EFM30607.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177371|emb|CBZ47415.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 249

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 125/238 (52%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANL--PHPFPVKTVPPQTID 102
           N  +YGVH V+ +L  N   K++    L  KN    +D   NL       +   P +T+ 
Sbjct: 10  NDIVYGVHAVTESLTANTGNKLYIQDDLRGKN----VDKIKNLAAEKKVSISWTPKKTLS 65

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +    AVHQG  L  +      LD +        + L+++LD +NDPHN G+ILR+A A
Sbjct: 66  DMTNG-AVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILRTADA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   + 
Sbjct: 125 TNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y
Sbjct: 185 -TPSHKWNTSGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAVLMY 241


>gi|307704980|ref|ZP_07641867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307621431|gb|EFO00481.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 242

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFSYSELDNILAKTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EHIP  R++NL+  L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHIPIARVTNLSQTLDKLKDEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|83720095|ref|YP_443037.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|167620200|ref|ZP_02388831.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis Bt4]
 gi|257139267|ref|ZP_05587529.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83653920|gb|ABC37983.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis E264]
          Length = 247

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   L+  LD V    LL+VLD V DPHN+GA LR A A     II  
Sbjct: 69  HQGVVARVEDLPLAQNLAELLDGVAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L     
Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLYDTKL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 237


>gi|149002852|ref|ZP_01827778.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|168493358|ref|ZP_02717501.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC3059-06]
 gi|194397072|ref|YP_002038090.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54]
 gi|225859218|ref|YP_002740728.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 70585]
 gi|237651107|ref|ZP_04525359.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CCRI 1974]
 gi|303254383|ref|ZP_07340490.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS455]
 gi|303259053|ref|ZP_07345032.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303261733|ref|ZP_07347680.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264406|ref|ZP_07350326.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
 gi|303267526|ref|ZP_07353374.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
 gi|303269332|ref|ZP_07355105.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
 gi|147759146|gb|EDK66140.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|183576562|gb|EDT97090.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC3059-06]
 gi|194356739|gb|ACF55187.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54]
 gi|225722127|gb|ACO17981.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 70585]
 gi|301802185|emb|CBW34931.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV200]
 gi|302598630|gb|EFL65669.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS455]
 gi|302637313|gb|EFL67801.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639996|gb|EFL70452.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302641162|gb|EFL71536.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
 gi|302642927|gb|EFL73226.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
 gi|302646218|gb|EFL76445.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
          Length = 242

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|182684414|ref|YP_001836161.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
 gi|182629748|gb|ACB90696.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
          Length = 253

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 66

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 67  KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 120

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 121 GSILRTADATNVSGVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 180

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 181 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 239

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 240 AAAILMY 246


>gi|119713240|gb|ABL97306.1| putative tRNA/rRNA methyltransferase [uncultured marine bacterium
           HF10_12C08]
          Length = 228

 Score =  118 bits (296), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAP 120
           N +R  +++  T  A  +L  +  L   + + T+    + ID ++   + HQG+ +    
Sbjct: 2   NKNRVKYEVYFTSEAERKLRSEVKL-ESYNIITIRKTREEIDLVLKGISNHQGICIRVEK 60

Query: 121 LLSPTL-DAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +  P L + ++N    + ++ +LD ++DP N+GAI RSA+AF  DGII T   S +E++ 
Sbjct: 61  IQPPHLTEFIKNLNKETSIIFLLDQLDDPQNVGAIFRSALAFDIDGIILTDHNSVAENSF 120

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           LAK+AS A++ IP+ +I N++  ++ +   G+   GL  +++  +      +KI  ILG+
Sbjct: 121 LAKTASSAIDKIPFTKIKNISSCIKILKDQGYWIYGLDMEAQSSITDIAFPNKIVFILGS 180

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E KG+R  T         + M   +++LNVSNAAA+ ++   N
Sbjct: 181 ESKGMRRVTSSLCDENLKIKMSDNLESLNVSNAAAIMMFYISN 223


>gi|325479190|gb|EGC82287.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 234

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 109/192 (56%), Gaps = 5/192 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +  V  +  DKI   +  HQG+ +E        LD + + + L++LD + DPHN+GAI
Sbjct: 45  IEISFVDKRFFDKI---DINHQGVMIEVESFKYENLDDLSDEKRLIILDQIEDPHNLGAI 101

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA +F  DG++  +R S S ++ + K+++GA+ +I   R+ NLT +++ +   GF   
Sbjct: 102 IRSAESFGFDGVVIPERRSASVTSTVYKTSAGAINNIKVYRVKNLTRSIKDLKDKGFWIY 161

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL+ ++   +++     K+ L++G EG G+    ++    + ++ M G + +LN S AA 
Sbjct: 162 GLAGEADSSIDKADLTGKVGLVVGNEGSGISRLVRDNCDMLVNIPMLGRVNSLNASVAAG 221

Query: 271 VALY--ITQNHF 280
           +++Y  + QN F
Sbjct: 222 ISMYELLRQNGF 233


>gi|116516815|ref|YP_816752.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           D39]
 gi|148992659|ref|ZP_01822327.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
 gi|148997484|ref|ZP_01825089.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|168483931|ref|ZP_02708883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1873-00]
 gi|168489618|ref|ZP_02713817.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae SP195]
 gi|168575914|ref|ZP_02721829.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae MLV-016]
 gi|169833851|ref|YP_001694873.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
 gi|116077391|gb|ABJ55111.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           D39]
 gi|147756539|gb|EDK63580.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|147928676|gb|EDK79690.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
 gi|168996353|gb|ACA36965.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042719|gb|EDT50765.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1873-00]
 gi|183571884|gb|EDT92412.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae SP195]
 gi|183578281|gb|EDT98809.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae MLV-016]
 gi|332073764|gb|EGI84243.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17570]
 gi|332200899|gb|EGJ14971.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41317]
 gi|332201895|gb|EGJ15965.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47368]
          Length = 242

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|293365120|ref|ZP_06611837.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307702175|ref|ZP_07639135.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|291316570|gb|EFE57006.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307624188|gb|EFO03165.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
          Length = 242

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 128/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+ + GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKAEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|306825520|ref|ZP_07458860.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432458|gb|EFM35434.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 242

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 13/236 (5%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YGVH V+ AL  N   K++  + L  KN     +  A       +     +++ ++
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELAAE--KKVSISWTSKKSLSEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  T-EGAVHQGFVLRVSEFAYSKLDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   
Sbjct: 121 VSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 180 PCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235


>gi|149011685|ref|ZP_01832881.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764116|gb|EDK71048.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP19-BS75]
 gi|301794481|emb|CBW36920.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|332203287|gb|EGJ17355.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47901]
          Length = 242

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|15903354|ref|NP_358904.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae
           R6]
 gi|307068107|ref|YP_003877073.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
 gi|15458955|gb|AAL00115.1| tRNA (guanosine-2'-O-)-methyltransferase, TrmH family
           [Streptococcus pneumoniae R6]
 gi|306409644|gb|ADM85071.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
          Length = 253

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 66

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 67  KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 120

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 121 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 180

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 181 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 239

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 240 AAAILMY 246


>gi|55820190|ref|YP_138632.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55822078|ref|YP_140519.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|116627048|ref|YP_819667.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMD-9]
 gi|55736175|gb|AAV59817.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55738063|gb|AAV61704.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|116100325|gb|ABJ65471.1| rRNA methylase [Streptococcus thermophilus LMD-9]
 gi|312277511|gb|ADQ62168.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           thermophilus ND03]
          Length = 247

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 13/234 (5%)

Query: 50  FLYGVHTVSAALN-NPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YGVH V+ +L  N   K++    L  KN  A     A       +   P +T+  + G
Sbjct: 11  IVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAE--KKVSISWTPKKTLSDMTG 68

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      LS  +D     +  L+++LD +NDPHN G+ILR+A A    
Sbjct: 69  G-AVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRTADATQVT 127

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G   D     
Sbjct: 128 GVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTDMDGTASH 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y
Sbjct: 188 KWNTAG-KLALIIGNEGKGISANIKKQVDEMITIPMGGHVQSLNASVAAAVLMY 240


>gi|331266684|ref|YP_004326314.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
           Uo5]
 gi|326683356|emb|CBZ00974.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
           Uo5]
          Length = 260

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|251781697|ref|YP_002995999.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390326|dbj|BAH80785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 248

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 133/238 (55%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ +L+ N   K++  + L  KN   + RL  +  +     +   P +T+ 
Sbjct: 10  NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVS----ISWTPKKTLS 65

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++  + AVHQG  L  +      LD +       ++ L+++LD + DPHN+G+ILR+A A
Sbjct: 66  EMT-EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V++K+++GA+EH+P  R++NL+  L K+ + GF T G   + 
Sbjct: 125 TNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTYGTDMNG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 185 -TPSHRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 241


>gi|322374580|ref|ZP_08049094.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C300]
 gi|321280080|gb|EFX57119.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C300]
          Length = 253

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 66

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 67  KSLSEMT------EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNL 120

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 121 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDQGF 180

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 181 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 239

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 240 AAAILMY 246


>gi|88798926|ref|ZP_01114508.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
 gi|88778406|gb|EAR09599.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
          Length = 252

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 129/242 (53%), Gaps = 14/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDK 103
           E+L++YG+H V +AL+N   ++ ++L  K   +A  +   D         + V     D+
Sbjct: 3   ESLWIYGLHAVFSALDNHPERVKEVLLLKGRDDARMKKLLDQVTEVGVRYRLVSRDDFDR 62

Query: 104 IVGKEAV----HQG-LALETA-PLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + K+ +    HQG LAL TA P+L        LD +    LL+VLD V DPHNIGA LR
Sbjct: 63  TLHKQQLKDIRHQGVLALTTAAPVLKENDLEALLDNLEEPPLLLVLDGVTDPHNIGACLR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  A    G+I  K  S + +A   K ASGA + +P+  ++NL   L+++   G    G 
Sbjct: 123 TCDAAGAHGLIVPKDKSATLTATAVKIASGATDTVPFFAVTNLARTLEELKQRGIWVYGT 182

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++   + Q      IAL++GAEGKGLR  T+E    + H+ M G + +LNVS AA V 
Sbjct: 183 AGEASSEIYQNRLQGPIALVMGAEGKGLRRLTREVCDELIHIPMAGDVSSLNVSVAAGVC 242

Query: 273 LY 274
           L+
Sbjct: 243 LF 244


>gi|289168211|ref|YP_003446480.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
 gi|288907778|emb|CBJ22618.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
          Length = 242

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYSELDHILEKTHQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 302

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 117/213 (54%), Gaps = 5/213 (2%)

Query: 64  PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           P+  +F  + TKN   RL    N+      P+  V  Q +D++ G   +HQG+ L+    
Sbjct: 73  PAVAMFVAIGTKND-QRLVEAVNIAASRSIPIVEVSKQKLDEMTGN-GLHQGIGLQIPEY 130

Query: 122 LSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               L D + +  +++ LD++ DP N+GA++RS  AF  DG++  +R S S +AV  +S+
Sbjct: 131 HYADLEDLITHDGMVVFLDNITDPRNLGAVIRSVAAFGADGVVIPERRSASVTAVTWRSS 190

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +G    +P  +++N+T AL++    G+Q IGL +  +   +       + +++G+EGKGL
Sbjct: 191 AGTAARVPVAKVTNMTRALKQFQEAGYQAIGLDAGGEHTHDSYDGTGPVVIVVGSEGKGL 250

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               +ET  ++  + M G +++LN S AA V L
Sbjct: 251 SRLVKETCDTIVTIPMEGWVESLNASVAAGVVL 283


>gi|167582034|ref|ZP_02374908.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis TXDOH]
          Length = 247

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   L+  LD +    LL+VLD V DPHN+GA LR A A     II  
Sbjct: 69  HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L     
Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLYDTKL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 237


>gi|322392209|ref|ZP_08065670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           peroris ATCC 700780]
 gi|321144744|gb|EFX40144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           peroris ATCC 700780]
          Length = 242

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 123/238 (51%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ AL  N   K++    L  KN   +  L  +  +   +  K    +  D
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTD 63

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                 AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A
Sbjct: 64  G-----AVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  S   + V+AK+A+GA+EH+P  R++NL+  L K+   GF   G   + 
Sbjct: 119 TNVSGVIIPKHRSVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWIFGTDMNG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +   + KIALI+G EG+G+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 -TPCHKWNTSGKIALIIGNEGRGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMY 235


>gi|170698709|ref|ZP_02889775.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           IOP40-10]
 gi|171317519|ref|ZP_02906709.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MEX-5]
 gi|170136413|gb|EDT04675.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           IOP40-10]
 gi|171097348|gb|EDT42193.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MEX-5]
          Length = 247

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105
            LYG H V+A L + +  + ++L  +    R   D    H      V     D+     +
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63

Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                HQG+   +E  PL   LS  LD ++   LL+VLD V DPHN+GA LR A +    
Sbjct: 64  AHTERHQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L
Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWVIGTSDDASATL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 184 YDTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLY 237


>gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
 gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
          Length = 244

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 128/240 (53%), Gaps = 12/240 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
           +L+G++ V  AL    RK+  L        RL+     A   H   VK    + +DK+VG
Sbjct: 4   YLFGLNAVFEALGQ-GRKVVALYVEAQRNPRLEEIVAQATERH-VAVKQCERRQLDKMVG 61

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+     A +   L      + ++ +  ++LD + DPHN GA++RSA A  C G
Sbjct: 62  -DVRHQGVVAQVKAQDFVSLAQLLAQSSQSERFFLILDGITDPHNFGALIRSAAAAGCQG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   + ++ K+A+G L ++   +++NL  A++++   G    GL+ +  + L 
Sbjct: 121 VIFAKDRSCPVTGIVEKTAAGTLGYVQLCQVTNLGRAIEELKKAGVWVYGLAGEEGQSLF 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
           +   +  IAL+ G+EG+G+RP  ++    +  + MPG +++LNVS A  +AL+ + +NH 
Sbjct: 181 EAPLSAPIALVAGSEGRGIRPLIRKLCDGLIAIPMPGRVESLNVSVATGIALFEVVRNHL 240


>gi|315612889|ref|ZP_07887800.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
 gi|315314999|gb|EFU63040.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
          Length = 242

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ AL  N   K++  + L  KN   +  L  +  +   +  K    +  +
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKRVSISWTSKKSLSEMTE 63

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                 AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A
Sbjct: 64  G-----AVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   + 
Sbjct: 119 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 -TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235


>gi|312796222|ref|YP_004029144.1| 23S rRNA Gm2251 methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312167997|emb|CBW75000.1| 23S rRNA Gm2251 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 253

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + S  I ++L  AT+      D+  A       +       +  + G
Sbjct: 11  VLYGFHAVTARLRHDSSSIEEVLYDATRRDRRMQDFLQAAQSSGVRLIAADDARLHGLAG 70

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+      L     L+  LDA+    LL+VLD V DPHN+GA LR A A     
Sbjct: 71  THR-HQGVVARATDLPLAQNLAELLDALPGPALLLVLDGVTDPHNLGACLRVADAAGAHA 129

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   ++  AK ASGA E +PYI ++NL   L+++   G   IG + D+++ L 
Sbjct: 130 VIAPRDRAVGLNSTAAKVASGAAETVPYITVTNLARTLRELKDAGVWVIGTAGDAQRSLY 189

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  +AL++GAEG+G+R  T+ET   + H+ M G + +LNVS A+ + L+
Sbjct: 190 DIALDGPVALVMGAEGEGMRRLTRETCDDLMHIPMMGSVGSLNVSVASGICLF 242


>gi|28198726|ref|NP_779040.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|71897946|ref|ZP_00680151.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|182681419|ref|YP_001829579.1| RNA methyltransferase [Xylella fastidiosa M23]
 gi|52783310|sp|Q87D65|RLMB_XYLFT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28056817|gb|AAO28689.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|71732190|gb|EAO34245.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|182631529|gb|ACB92305.1| RNA methyltransferase, TrmH family, group 3 [Xylella fastidiosa
           M23]
 gi|307579865|gb|ADN63834.1| RNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 249

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHP-FPVKTVPPQTID 102
           +N ++ G++ V +++ N +  + ++L   A+KN+   LD + N       V+ V  Q +D
Sbjct: 4   KNQWIVGINAVVSSIENDAEHVREVLVEAASKNSRL-LDIEENARRKGIEVRRVTTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A +       L   +DA     LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S   +A + K++SGA + +P I + NL  +L+++        GL+ +
Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  L        +AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+
Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLF 240


>gi|71275861|ref|ZP_00652145.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
 gi|71899357|ref|ZP_00681517.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|71163439|gb|EAO13157.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
 gi|71730871|gb|EAO32942.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
          Length = 249

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHP-FPVKTVPPQTID 102
           +N ++ G++ V +++ N +  + ++L   A+KN+   LD + N       V+ V  Q +D
Sbjct: 4   KNQWIVGINAVVSSIENDAEHVREVLLEAASKNSRL-LDIEENARRKGIEVRRVTTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A +       L   +DA     LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S   +A + K++SGA + +P I + NL  +L+++        GL+ +
Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  L        +AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+
Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLF 240


>gi|269121680|ref|YP_003309857.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
           ATCC 33386]
 gi|268615558|gb|ACZ09926.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
           ATCC 33386]
          Length = 234

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 94/158 (59%), Gaps = 2/158 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           LE    L   L   R+  +++VLD + DP N GAI+RSA  F  DGII   R S S +  
Sbjct: 72  LELNEFLEKVLAKQRS--IVLVLDQIQDPRNFGAIIRSAECFGVDGIIIQDRNSVSVTET 129

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + KS++GA+EH+  I+++N++D++ K+  +G+   G  +D +     E   +K+ L+LG+
Sbjct: 130 VVKSSTGAIEHVDIIKVTNVSDSMDKLKKYGYFIYGAEADGETEYYNEPFPEKLCLVLGS 189

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           EGKG+R K +E    + ++ M G I +LNVS A  + L
Sbjct: 190 EGKGMRKKVKEHCDKILNIPMHGKINSLNVSVANGILL 227


>gi|171058586|ref|YP_001790935.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170776031|gb|ACB34170.1| RNA methyltransferase, TrmH family, group 3 [Leptothrix cholodnii
           SP-6]
          Length = 244

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 105/184 (57%), Gaps = 8/184 (4%)

Query: 99  QTIDKIVGKEA---VHQGLALET---APL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           +T DK +G+ A    HQG+       AP+  L   LDAV    L++VLD V DPHN+GA 
Sbjct: 54  ETDDKRLGQMAGNTRHQGVVARVNVLAPIHSLDDLLDAVEGPPLVLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR A       +I  K ++   +A +AK ASGA E +PY  ++NL   L ++     + I
Sbjct: 114 LRVADGAGAHAVIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIRVI 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G S D+ + +     +  +A++LGAEG G+R  T++T   + H+ M G +++LNVS A+A
Sbjct: 174 GTSEDATQSIYDIDLSGPVAIVLGAEGPGMRQLTRKTCDELVHIPMRGAVESLNVSVASA 233

Query: 271 VALY 274
           V LY
Sbjct: 234 VCLY 237


>gi|167562889|ref|ZP_02355805.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           oklahomensis EO147]
 gi|167570076|ref|ZP_02362950.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           oklahomensis C6786]
          Length = 247

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   L+  LD +    LL+VLD V DPHN+GA LR A A     II  
Sbjct: 69  HQGVVARVEDLPLAQNLAELLDGISGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L     
Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLYDTKL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMVGSVESLNVSVASGVCLY 237


>gi|239997218|ref|ZP_04717742.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           ATCC 27126]
          Length = 246

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQT---IDKIV 105
           +LYG+H + + L     ++ ++L  K     RL    N    F +     Q     DK+ 
Sbjct: 6   WLYGLHAMQSVLEKEPERVMEVLVLKGRNDERLTNIVNQARRFGISVQFCQRKALDDKVS 65

Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159
           G++  HQG+     P   L    LD +  S+   L++VLD V DPHN+GA LR+A     
Sbjct: 66  GEQ--HQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADGAGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++  K  S S +  + K A GA E +P I+I+NL   L+ +   G   +G + ++ K 
Sbjct: 124 HAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGETDKT 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L         AL++GAEGKG+R  T+ET   +  L M G + +LNVS A  V LY
Sbjct: 184 LYDVDLKGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATGVCLY 238


>gi|330807239|ref|YP_004351701.1| 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375347|gb|AEA66697.1| Putative 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 252

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 121/233 (51%), Gaps = 10/233 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++ Q+ LA   +  R+     L     V     +  +  V  E 
Sbjct: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMDVWVEG 65

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    + LL+VLD V DPHN+GA LRSA A     +
Sbjct: 66  VHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGALAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  + +
Sbjct: 126 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSIYD 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q++    I LI+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 186 QDLTGPTI-LIMGAEGKGMRRLTREHCDYLVKLPMAGSVSSLNVSVATGVCLF 237


>gi|115351501|ref|YP_773340.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|172060520|ref|YP_001808172.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|115281489|gb|ABI87006.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|171993037|gb|ACB63956.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MC40-6]
          Length = 247

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105
            LYG H V+A L + +  + ++L  +    R   D    H      V     D+     +
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHTAKEAGVRLIAADETRLWGL 63

Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                HQG+   +E  PL   LS  LD ++   LL+VLD V DPHN+GA LR A +    
Sbjct: 64  AHTERHQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L
Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDDASATL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 184 YDTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLY 237


>gi|237747635|ref|ZP_04578115.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229378997|gb|EEO29088.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 249

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 124/236 (52%), Gaps = 9/236 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQT--IDK 103
           +N  ++G H V++ L + +  + +L        R   D   +     V+ +      +DK
Sbjct: 2   KNKVIFGFHAVTSRLRHEASSVEELYVDAERSDRRMQDLLKVAKAAGVRIIQADGARLDK 61

Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +VG    HQG+    AP+     L   LDA+  + LL+VLD + DPHN+GA LR A +  
Sbjct: 62  MVGTRR-HQGVVAMAAPVSLARNLDELLDAIEGAPLLLVLDGITDPHNLGACLRVADSVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  +   +A + K ASGA E +PYI ++NL   L+++       +G + D+++
Sbjct: 121 AHAVIAPKDRAVGINATVQKVASGAAETVPYITVTNLARTLRQLQERDIWVVGTTDDAEE 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L +   +  +A ++G+EG+G+R  T+E    +  + M G +++LN+S A+ + LY
Sbjct: 181 SLYEPDYSGGVAFVMGSEGEGIRRLTRENCDQLVAIPMFGSVESLNISVASGICLY 236


>gi|322390887|ref|ZP_08064395.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           parasanguinis ATCC 903]
 gi|321142400|gb|EFX37870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           parasanguinis ATCC 903]
          Length = 242

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 23/241 (9%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99
           N  +YGVH V+ AL  N   K++  + L  KN     ALA             +   P +
Sbjct: 4   NDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAA-------EKKVSISWTPKK 56

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
           T+ ++  + AVHQG  L  A      L A+        + LL++LD + DPHN+G+ILR+
Sbjct: 57  TLQEMT-EGAVHQGFVLRVAAFAYTDLAAILKQTAQEENPLLLILDGLTDPHNLGSILRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A +  G+I  K  +   + V++K+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 116 ADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTD 175

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +   P  Q     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +
Sbjct: 176 MNG-TPSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILM 234

Query: 274 Y 274
           Y
Sbjct: 235 Y 235


>gi|270158538|ref|ZP_06187195.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289166630|ref|YP_003456768.1| enzyme [Legionella longbeachae NSW150]
 gi|269990563|gb|EEZ96817.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288859803|emb|CBJ13784.1| putative enzyme [Legionella longbeachae NSW150]
          Length = 250

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 123/240 (51%), Gaps = 21/240 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ-TIDKIVG-- 106
           ++YG+H VSA L NP R       TK     LD + N       K +     I+K+    
Sbjct: 5   YVYGLHAVSALLANPHRM------TKKLYVSLDREDNRLQEIIDKAMQANINIEKVSMHK 58

Query: 107 -----KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
                 +  HQG+    + L       L   L++ ++  L+++LD + DPHN+GA LR+A
Sbjct: 59  MNQRFADFTHQGVVACASSLPEYNESHLLALLESSKHPALILILDGITDPHNLGACLRTA 118

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D ++  K  S S + V++K A GA E +P +R++NL  +++ +   G    G + 
Sbjct: 119 DATGVDFVMIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSIKLLKEHGVWVYGAAG 178

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      IA++LGAEG+GLR  T+E   S+  L M G + +LNVS A  V+LY
Sbjct: 179 EATGTLYQTDCTSAIAIVLGAEGEGLRRLTRENCDSLFSLPMLGSVDSLNVSVATGVSLY 238


>gi|167589923|ref|ZP_02382311.1| RNA methyltransferase TrmH, group 3 [Burkholderia ubonensis Bu]
          Length = 247

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105
            LYG H V+A L + +  + ++L  +    R   D    H      V     D+     +
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63

Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                HQG+   +E  PL   LS  LD ++   LL+VLD V DPHN+GA LR A A    
Sbjct: 64  AHTERHQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L
Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 184 YDTKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237


>gi|70734080|ref|YP_257720.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68348379|gb|AAY95985.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           fluorescens Pf-5]
          Length = 254

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 14/235 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+ LA   +  R+    +L   +   V     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKQIWLAEGRSDPRVQVLVDLAAQNRVSVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   LD    + LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + ++++ L
Sbjct: 125 AVLVPKDKSATLTPTVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEQEL 184

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +Q++    I +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 185 YDQDLTGPTI-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238


>gi|329767864|ref|ZP_08259378.1| RNA methyltransferase [Gemella haemolysans M341]
 gi|328838652|gb|EGF88251.1| RNA methyltransferase [Gemella haemolysans M341]
          Length = 271

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 137/267 (51%), Gaps = 18/267 (6%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENL-----FLYGVHTVSAALNNP---SRKIFQLLAT 74
           +++N++ YK+++  N++ +   Q   +      + G + +  A+ +    ++ +FQ    
Sbjct: 1   MKKNNKHYKELRLKNKEQKSQVQTAEVDLDKEVIAGRNAILEAIKSGREINKILFQEGIE 60

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132
           K  L  +   AN       + VP + +D    +   HQG+    AP     LD V N+  
Sbjct: 61  KGRLKSIFAIAN-EKKIICQEVPKRKLDNSTTER--HQGVIAYVAPYSYFELDEVVNNLE 117

Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++LDH+ DPHN+GAI+R+A A     II  KR +   S    K+++GA+EH+P
Sbjct: 118 INKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
            IR+SNLTDA++K+   GF   G +   +     +I  D  +A+++G EG+G+       
Sbjct: 178 VIRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNE 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              + HL M G I++LN S AA + +Y
Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMY 264


>gi|319946269|ref|ZP_08020509.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           australis ATCC 700641]
 gi|319747651|gb|EFV99904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           australis ATCC 700641]
          Length = 242

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 128/237 (54%), Gaps = 13/237 (5%)

Query: 47  ENLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +N  +YGVH V+ AL  N   K++    L  KN     D  A+      +   P +T+ +
Sbjct: 3   KNDIVYGVHAVTEALIANTGNKLYIQDDLRGKNVEKIKDLAAD--KKVSISWTPKKTLQE 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +  + AVHQG  L  +      L+ +      +++ LL++LD + DPHN+G+ILR+A A 
Sbjct: 61  MT-EGAVHQGFVLRVSEFAYTDLNEILTQVANQDNPLLLILDGLTDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   +  
Sbjct: 120 QVAGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMNG- 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 TPSHKWNTSGKLALIIGNEGKGISTNIKKQVDEMITIPMQGHVQSLNASVAAAILMY 235


>gi|317495868|ref|ZP_07954231.1| RNA methyltransferase [Gemella moribillum M424]
 gi|316914045|gb|EFV35528.1| RNA methyltransferase [Gemella moribillum M424]
          Length = 270

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 138/266 (51%), Gaps = 17/266 (6%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPE----NLFLYGVHTVSAALNNP---SRKIFQLLATK 75
           +++N++ YK+++S N++ ++    E       + G + +  A+ +    ++ +FQ    K
Sbjct: 1   MKKNNKYYKELRSKNKEEKNNQNTEVDADKEVIAGRNAILEAIKSGREINKILFQEGIEK 60

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---- 131
             L  +   AN       + VP + +D    +   HQG+    AP     LD V N    
Sbjct: 61  GRLKAIFSIAN-EKKIVCQEVPKRKLDNSTTER--HQGVIAFVAPYNYFELDEVLNKIEI 117

Query: 132 --SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +  L++LDH+ DPHN+GAI+RSA A    G+I  KR +   S    K+++GA+EH+P 
Sbjct: 118 NKNTTLLLLDHIEDPHNLGAIIRSAEASGVKGVIIPKRRAAVVSQTAVKASAGAIEHMPV 177

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETA 248
           IR+S+L DA++K+   GF   G +   +     +I  D  + +++G EG+G+        
Sbjct: 178 IRVSSLIDAIKKLKEKGFWIAGTTLTERSEDYTKIAKDVPLVIVVGNEGEGMSKVVTNEC 237

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             + HL M G +++LNVS AA + +Y
Sbjct: 238 DFLYHLPMLGKVQSLNVSVAAGIVMY 263


>gi|306829232|ref|ZP_07462422.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304428318|gb|EFM31408.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 242

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 125/236 (52%), Gaps = 13/236 (5%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YGVH V+ AL  N   K++  + +  KN     +  A       +     +++ ++
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDIRGKNVEKVKELAAE--KKVSISWTSKKSLSEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  T-EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   
Sbjct: 121 VSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 180 PCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235


>gi|229917377|ref|YP_002886023.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
           AT1b]
 gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
           AT1b]
          Length = 250

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           FLYG + V  AL +     K+F +    K  LA++   AN      V  VP   ++K+ G
Sbjct: 8   FLYGRNPVLEALRSGRDMNKVFIMEGQQKGPLAQIIAMAN-EASVQVSFVPKTKLEKMAG 66

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+    A     T++ +         + L ++LD + DPHN+G+ILR+A A   
Sbjct: 67  SEH-HQGVVAAVAAYEYKTVEDMFALAASKEETPLFILLDELEDPHNLGSILRTADAVGA 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII  KR S   +  +AK+++GA+EHIP  R++NLT  L+++   G   +G  +   + 
Sbjct: 126 HGIIIPKRRSVGLTQTVAKASTGAIEHIPVARVTNLTRTLEELKEKGLWVVGTDAKESQD 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   N  + +++G+EGKG+    +E+   + HL M G + +LN S AAA+ LY
Sbjct: 186 YRRLDGNMPLVVVIGSEGKGMSRLVRESCDFLVHLPMVGHVTSLNASVAAALLLY 240


>gi|149007272|ref|ZP_01830930.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|307126973|ref|YP_003879004.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 670-6B]
 gi|147761076|gb|EDK68044.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484035|gb|ADM90904.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 670-6B]
          Length = 242

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 126/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      LD +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL   L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLNQTLYKLKDEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +     KIALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|302039376|ref|YP_003799698.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
           defluvii]
 gi|300607440|emb|CBK43773.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
           defluvii]
          Length = 246

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 128/237 (54%), Gaps = 17/237 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-----NALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +YG+H V  AL    R I +LL          ++RL  +  +P    V+  P   +D++
Sbjct: 1   MIYGLHAVREALRAGVRPIQRLLVLGTDRQFGEISRLAREQRVP----VRVEPRAALDRL 56

Query: 105 VGKEAVHQGL-ALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQG+  +  A   +   D + ++Q      LL++LD V DPHN+GAILR+A A 
Sbjct: 57  V-PSGHHQGVVGVVAAKAYAEPDDILASAQVEGQTPLLVLLDGVEDPHNLGAILRTAEAS 115

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+   +R +   ++V+AK+++GA++++P  R+ NL+  ++++   G     L +++ 
Sbjct: 116 GVQGVFIPERRAVGLTSVVAKASAGAVDYMPVGRVPNLSRLIERLQDAGIWVYALDAEAP 175

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K   +   +  +AL+ G EG G+RP  ++     AH+ M G + +LNVS +AA+ LY
Sbjct: 176 KAYTELDFSGPVALVFGGEGTGVRPGVRDACDEAAHIPMLGKVSSLNVSASAAIVLY 232


>gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           Fw109-5]
          Length = 245

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 109/189 (57%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145
           V++ P   +D++ G +  HQG+    A      +   L A R S    L++VLD V DPH
Sbjct: 50  VRSAPRAKLDRLAGTDR-HQGVVAMVADFRYAEVEDLLAAARASGRPPLVVVLDGVEDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RSA A    G++  K  +   +  +AK+++GA+E  P  R++N++  L+ +   
Sbjct: 109 NLGAIIRSAHALGAHGVVIPKDRAVGVTPAVAKASAGAVERCPVARVTNVSKTLEALKEA 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G  ++ L++D   PL        IAL+LG+EG+GLRP  ++T    A + M G + +L+V
Sbjct: 169 GIWSVALAADGDAPLGAVDLTGPIALVLGSEGEGLRPLVRKTCDHSARIPMSGDLDSLSV 228

Query: 266 SNAAAVALY 274
           S +AAVALY
Sbjct: 229 SASAAVALY 237


>gi|325271218|ref|ZP_08137763.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324103621|gb|EGC00923.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 248

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++       +        +   V     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLQALLALAAENRVAVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEEMLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLF 238


>gi|76810371|ref|YP_333368.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|217423817|ref|ZP_03455318.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 576]
 gi|238563304|ref|ZP_00439092.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           GB8 horse 4]
 gi|242316025|ref|ZP_04815041.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106b]
 gi|251767767|ref|ZP_02268341.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           PRL-20]
 gi|254197285|ref|ZP_04903707.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei S13]
 gi|76579824|gb|ABA49299.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710b]
 gi|169654026|gb|EDS86719.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei S13]
 gi|217393675|gb|EEC33696.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 576]
 gi|238520972|gb|EEP84427.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           GB8 horse 4]
 gi|242139264|gb|EES25666.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106b]
 gi|243061768|gb|EES43954.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           PRL-20]
          Length = 260

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   L+  LD +    LL+VLD V DPHN+GA LR A A     II  
Sbjct: 82  HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 141

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   +     
Sbjct: 142 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 201

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 202 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 250


>gi|134282338|ref|ZP_01769043.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 305]
 gi|134246376|gb|EBA46465.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 305]
          Length = 260

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   L+  LD +    LL+VLD V DPHN+GA LR A A     II  
Sbjct: 82  HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 141

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   +     
Sbjct: 142 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 201

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 202 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 250


>gi|257871416|ref|ZP_05651069.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257805580|gb|EEV34402.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 275

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 133/260 (51%), Gaps = 15/260 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLD 82
           R+N    K+    N +   T   +  F++G H V  AL      K+F  +A      ++D
Sbjct: 11  RQNTVKNKQHTRKNFREETTELIDENFVFGYHAVIEALKEGRGNKLF--MAEDARGEKID 68

Query: 83  W--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLM 136
              +A      PVK VP Q +D++   + VHQ + L   P    +LD +    +     +
Sbjct: 69  GLKEAARAQSVPVKWVPKQKLDQM-SNQGVHQSVILAITPYEYLSLDELLAQTKEQSFYL 127

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD++ DPHN G+ILR+A A   DGII  K  +   + V+ K+++GA+EHIP  R++NL+
Sbjct: 128 ILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHIPIARVTNLS 187

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPKTQETATSMAHL 254
            A+Q++   GF   G      K  +  + N + A  LI+G EG+G+    ++    M  +
Sbjct: 188 QAIQQLKQAGFWIFGTDM---KGTDYRLWNAQGAAGLIIGNEGRGMSEGLKKDVDEMLTI 244

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN S AA + +Y
Sbjct: 245 PMTGHVQSLNASVAAGLLMY 264


>gi|192360670|ref|YP_001983449.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190686835|gb|ACE84513.1| RNA methyltransferase, TrmH family, group 3 [Cellvibrio japonicus
           Ueda107]
          Length = 249

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YG+H V A L +  +++ ++   +      L ++   A L +      V    +D +V
Sbjct: 5   LVYGLHAVQALLKSAPQRVLEIYVLQGRQDQRLQKIAHAAEL-NQIHCNLVSRNKLDDMV 63

Query: 106 GKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +E  HQG+     P        L   L+ +     L+VLD V DPHN+GA +RSA A  
Sbjct: 64  SEEN-HQGVVARCTPGETYDEAYLFSLLETLDEPPFLLVLDGVTDPHNLGACMRSAEAAG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   + V  K A GA E +P+I ++NL   L+K+   G    G + ++ +
Sbjct: 123 VHAVIAPKDKSAGLTPVARKVACGAAEVLPFIPVTNLARTLKKLQEKGIWLFGAAGEASQ 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L Q      IA+++GAEG GLR  TQET   + H+ M G + +LNVS A  V L+
Sbjct: 183 SLYQTRLTGPIAILMGAEGDGLRRLTQETCDQLMHIPMAGSVSSLNVSVATGVCLF 238


>gi|78066159|ref|YP_368928.1| RNA methyltransferase TrmH, group 3 [Burkholderia sp. 383]
 gi|77966904|gb|ABB08284.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia sp. 383]
          Length = 247

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105
            LYG H V+A L + +  + ++L  +    R   D    H      V     D+     +
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHTAKEAGVRLIAADETRLWGL 63

Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                HQG+   +E  PL   LS  LD ++   LL+VLD V DPHN+GA LR A +    
Sbjct: 64  AHTERHQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L
Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 184 YETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237


>gi|146283972|ref|YP_001174125.1| RNA methyltransferase [Pseudomonas stutzeri A1501]
 gi|145572177|gb|ABP81283.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas stutzeri
           A1501]
 gi|327482300|gb|AEA85610.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 251

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG+H V A L +  +++ Q+ LA      R+     L     V     +  +     E 
Sbjct: 7   IYGLHAVEALLRHHPKRVKQVWLAEGRGDPRVQVLIELAAQARVSVGQCERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD      LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRAEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++++ L  
Sbjct: 127 IVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQKGLWVVGTAGEAEQSLYA 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     I L++GAEG+G+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDLTGPIVLVMGAEGRGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238


>gi|161524858|ref|YP_001579870.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189350392|ref|YP_001946020.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221197831|ref|ZP_03570877.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2M]
 gi|221204611|ref|ZP_03577628.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2]
 gi|221213042|ref|ZP_03586018.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD1]
 gi|160342287|gb|ABX15373.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans ATCC 17616]
 gi|189334414|dbj|BAG43484.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221167255|gb|EED99725.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD1]
 gi|221175468|gb|EEE07898.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2]
 gi|221181763|gb|EEE14164.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2M]
          Length = 247

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105
            LYG H V+A L + +  + ++L  +    R   D    H      V     D+     +
Sbjct: 6   VLYGFHAVTARLRHDAATVVEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63

Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                HQG+   +E  PL   LS  LD ++   LL+VLD V DPHN+GA LR A A    
Sbjct: 64  AHTERHQGVVARVEDLPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L
Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 184 YDTKLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237


>gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
 gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18]
          Length = 249

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106
            +YG++    AL   SRKIF+L +A  +A  RL+    L      PV+      ++++ G
Sbjct: 6   IIYGLNPAMEALRG-SRKIFELFVAGTSADKRLEKLLKLAAERKVPVRQREKGDLNRLCG 64

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            E  HQG+AL+  P     LD V        + L++VLD V DPHN+GA++RSA     +
Sbjct: 65  TEH-HQGVALKVEPFPYADLDDVLEGLQGEGNGLILVLDSVQDPHNLGALIRSAACAGAN 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  +   +AV+ K+++GA E +   +++N++ AL+ +   GF   G    +K  L
Sbjct: 124 AVVIPKDRAAGVTAVVEKASAGATETVAVAQVTNISQALETLKKAGFWIYGADGSAKHTL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+     +AL++G EG+G+RP  ++    +  + + G + +LN S A  + L+
Sbjct: 184 YQQDFTGPVALVIGGEGEGIRPLVRKGCDEVVSIPLQGGVNSLNASVAGGIFLF 237


>gi|226196377|ref|ZP_03791959.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pakistan 9]
 gi|254297770|ref|ZP_04965223.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 406e]
 gi|157807881|gb|EDO85051.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 406e]
 gi|225931594|gb|EEH27599.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pakistan 9]
          Length = 231

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   L+  LD +    LL+VLD V DPHN+GA LR A A     II  
Sbjct: 53  HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 112

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   +     
Sbjct: 113 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 172

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 173 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 221


>gi|53719486|ref|YP_108472.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|53723479|ref|YP_102933.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|121601104|ref|YP_993068.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124385837|ref|YP_001026152.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126440617|ref|YP_001058836.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126449600|ref|YP_001080577.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|126453075|ref|YP_001066084.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|167719760|ref|ZP_02402996.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei DM98]
 gi|167738755|ref|ZP_02411529.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 14]
 gi|167815979|ref|ZP_02447659.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 91]
 gi|167824352|ref|ZP_02455823.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 9]
 gi|167845895|ref|ZP_02471403.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei B7210]
 gi|167894463|ref|ZP_02481865.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 7894]
 gi|167902867|ref|ZP_02490072.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911108|ref|ZP_02498199.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 112]
 gi|167919128|ref|ZP_02506219.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei BCC215]
 gi|254177694|ref|ZP_04884349.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 10399]
 gi|254179938|ref|ZP_04886537.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1655]
 gi|254188656|ref|ZP_04895167.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254199876|ref|ZP_04906242.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           FMH]
 gi|254206204|ref|ZP_04912556.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           JHU]
 gi|254259237|ref|ZP_04950291.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710a]
 gi|254358375|ref|ZP_04974648.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           2002721280]
 gi|52209900|emb|CAH35872.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|52426902|gb|AAU47495.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 23344]
 gi|121229914|gb|ABM52432.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           SAVP1]
 gi|124293857|gb|ABN03126.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           NCTC 10229]
 gi|126220110|gb|ABN83616.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 668]
 gi|126226717|gb|ABN90257.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106a]
 gi|126242470|gb|ABO05563.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           NCTC 10247]
 gi|147749472|gb|EDK56546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           FMH]
 gi|147753647|gb|EDK60712.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           JHU]
 gi|148027502|gb|EDK85523.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           2002721280]
 gi|157936335|gb|EDO92005.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698733|gb|EDP88703.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 10399]
 gi|184210478|gb|EDU07521.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1655]
 gi|254217926|gb|EET07310.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710a]
          Length = 247

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   L+  LD +    LL+VLD V DPHN+GA LR A A     II  
Sbjct: 69  HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   +     
Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLY 237


>gi|237812095|ref|YP_002896546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei MSHR346]
 gi|237503283|gb|ACQ95601.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei MSHR346]
          Length = 247

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   L+  LD +    LL+VLD V DPHN+GA LR A A     II  
Sbjct: 69  HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   +     
Sbjct: 129 RDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGRVESLNVSVASGVCLY 237


>gi|258512689|ref|YP_003186123.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 255

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 108/187 (57%), Gaps = 8/187 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ---LLMVLDHVNDPHNI 147
           V+ VP   +D++    + HQG+  + AP     LD V  R++    L++VLD + DPHN 
Sbjct: 65  VQFVPRSRLDEMA---SAHQGVIAQVAPYAYVDLDDVIRRDTGFAPLVVVLDEIADPHNF 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILR+A A    G++  KR     + V+AK+A+GALE +P  R++N+  ALQ++   G+
Sbjct: 122 GAILRTAEASGAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARVANVAQALQRLKQAGY 181

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G   ++K P  +       A+++G+EG+G+R   +E    +  + + G +++LN S 
Sbjct: 182 WIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNASV 241

Query: 268 AAAVALY 274
           AA V LY
Sbjct: 242 AAGVLLY 248


>gi|107022620|ref|YP_620947.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia AU
           1054]
 gi|116689569|ref|YP_835192.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|105892809|gb|ABF75974.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116647658|gb|ABK08299.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
           HI2424]
          Length = 247

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105
            LYG H V+A L + +  + ++L  +    R   D    H      V     D+     +
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63

Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                HQG+   +E  PL   LS  LD +    LL+VLD V DPHN+GA LR A +    
Sbjct: 64  AHTERHQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L
Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 184 YETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237


>gi|123968445|ref|YP_001009303.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           AS9601]
 gi|123198555|gb|ABM70196.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           AS9601]
          Length = 335

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 143/276 (51%), Gaps = 19/276 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL------FLYGVHTVSAALNNPSRKIF 69
           KDS ++ L+R    +K     + K+   +Q  N       +++G H+V  AL++  R I 
Sbjct: 57  KDSTFSSLKRKKPTFKSNIGLHNKNPDINQEFNNKKNFDDWIWGKHSVYEALSSE-RAIN 115

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTID----KIVGKEAVHQGLALETAPLLSPT 125
           ++  T    +  D    L      K V  + +       +   A HQG+AL+ A   + +
Sbjct: 116 RIWCTSEIFSS-DKFYILLKDLKSKGVLIEEVSWNRLSQLTYGASHQGIALQLACSRTIS 174

Query: 126 LDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L+ + +       + +++ LD + DPHN+GAI+RSA AF C GII  +R S   +  +AK
Sbjct: 175 LEQLIDFSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAK 234

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A+GALEH+   R+ NL  AL+++   GF  +GLS D +  +   ++   + +I+G+E K
Sbjct: 235 VAAGALEHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSEEK 294

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+   TQ+    +  + + G   +LN S AAA++L+
Sbjct: 295 GISLLTQKKCDFLLSIPLRGKTSSLNASVAAAISLF 330


>gi|269123132|ref|YP_003305709.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
           moniliformis DSM 12112]
 gi|268314458|gb|ACZ00832.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
           moniliformis DSM 12112]
          Length = 232

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 92/147 (62%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           + +++   +++LD + DP N GAI+RS   F   GII   R +   +  + KS++GA+EH
Sbjct: 81  ELMKDESTIVILDQIQDPRNFGAIIRSCECFGVSGIIMQDRNNVKVTETVVKSSTGAIEH 140

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +  ++++N+ D+++K+  +G+   G  ++ +K   +E    K AL+LG+EGKG+R + +E
Sbjct: 141 VDIVQVTNIADSIEKLQKYGYFVYGAEANGEKFYYEEKYPKKKALVLGSEGKGMRKRVRE 200

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  S+  +H+ G I +LNVS AA + L
Sbjct: 201 SCDSILKIHLKGEINSLNVSVAAGILL 227


>gi|322388153|ref|ZP_08061757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           infantis ATCC 700779]
 gi|321140825|gb|EFX36326.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           infantis ATCC 700779]
          Length = 242

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ AL  N   K++             + LAT+  ++ + W +        
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVS-ISWTSK------- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           K++   T      + AVHQG  L  +      L+ +        + LL++LD + DPHN+
Sbjct: 56  KSLSEMT------EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNL 109

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF
Sbjct: 110 GSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKEEGF 169

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T G   +   P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S 
Sbjct: 170 WTFGTDMNG-TPCHKWNTSGKVALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASV 228

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 229 AAAILMY 235


>gi|257879805|ref|ZP_05659458.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257882531|ref|ZP_05662184.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257891646|ref|ZP_05671299.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257894123|ref|ZP_05673776.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|257814033|gb|EEV42791.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257818189|gb|EEV45517.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257828006|gb|EEV54632.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257830502|gb|EEV57109.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
          Length = 289

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 12/265 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKN 76
           +   ++N    KK    NQ     ++   E+ F++G H    AL      K+F    ++ 
Sbjct: 18  FEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRG 77

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129
                  +       PVK VP Q ++ +     VHQG+ L   P    +LD +       
Sbjct: 78  EKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEK 136

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K+++GA+EH+P 
Sbjct: 137 KEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPV 196

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R++NL  A+Q++   GF   G         +   K   IAL++G EGKG+ P  ++   
Sbjct: 197 ARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMD 255

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + M G +++LN S AA + +Y
Sbjct: 256 ELLTIPMTGHVQSLNASVAAGLLMY 280


>gi|312867923|ref|ZP_07728127.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parasanguinis F0405]
 gi|311096327|gb|EFQ54567.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parasanguinis F0405]
          Length = 242

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 23/241 (9%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99
           N  +YGVH V+ AL  N   K++  + L  KN     ALA             +   P +
Sbjct: 4   NDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAA-------EKKVSISWTPKK 56

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
           T+ ++  + AVHQG  L  A      L A+        + LL++LD + DPHN+G+I+R+
Sbjct: 57  TLQEMT-EGAVHQGFVLRVAAFAYTDLAAILKQTAKEENPLLLILDGLTDPHNLGSIIRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A +  G+I  K  +   + V++K+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 116 ADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTD 175

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +   P  Q     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +
Sbjct: 176 MNG-TPSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILM 234

Query: 274 Y 274
           Y
Sbjct: 235 Y 235


>gi|261206630|ref|ZP_05921328.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289564991|ref|ZP_06445445.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           D344SRF]
 gi|294614952|ref|ZP_06694843.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1636]
 gi|260079123|gb|EEW66816.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289163198|gb|EFD11044.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           D344SRF]
 gi|291592238|gb|EFF23856.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1636]
          Length = 286

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 12/261 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALAR 80
           ++N    KK    NQ     ++   E+ F++G H    AL      K+F    ++     
Sbjct: 19  KQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVE 78

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133
              +       PVK VP Q ++ +     VHQG+ L   P    +LD +       +   
Sbjct: 79  ELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEKKEDL 137

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K+++GA+EH+P  R++
Sbjct: 138 FFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPVARVT 197

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  A+Q++   GF   G         +   K   IAL++G EGKG+ P  ++    +  
Sbjct: 198 NLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLT 256

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN S AA + +Y
Sbjct: 257 IPMTGHVQSLNASVAAGLLMY 277


>gi|307729459|ref|YP_003906683.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1003]
 gi|307583994|gb|ADN57392.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1003]
          Length = 247

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+      L     L+  LD +  S LL+VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARAGDLPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G S ++ K L +   
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTSGEATKSLYETEL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+
Sbjct: 189 DGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237


>gi|148549961|ref|YP_001270063.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148514019|gb|ABQ80879.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida F1]
          Length = 248

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+ L+   +  RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238


>gi|172036714|ref|YP_001803215.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
 gi|171698168|gb|ACB51149.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
          Length = 292

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 19/244 (7%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           Q E+  +YG H+V AAL +  R++ ++  T     RL +D    +           ID++
Sbjct: 41  QSEDDLIYGRHSVLAALES-DRQLNRIWITN----RLHYDPRFHNLIQASKAKGAVIDEV 95

Query: 105 -------VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAI 150
                  +   A HQG+A + AP     LD       A  +  ++++ D + DPHN+GAI
Sbjct: 96  SLQRLSQITNGANHQGVAAQVAPYTYHELDELITQAKANSDEPVIVIADGIADPHNLGAI 155

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A  C G+I  +R +   ++ ++K ++GALE  P  R+ NL+ AL+ + + GF   
Sbjct: 156 IRTAEAMGCQGLIIPQRRAAGVTSTVSKVSAGALESFPVARVVNLSRALETLKAEGFWIY 215

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G  ++  K L+       I L++G+EG GL   TQ     +  + + G   +LN S AAA
Sbjct: 216 GTVAEGGKRLQDFDFRGAIGLVIGSEGSGLSLLTQRCCDELISIPLEGKTPSLNASVAAA 275

Query: 271 VALY 274
           + LY
Sbjct: 276 INLY 279


>gi|69245491|ref|ZP_00603455.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
 gi|258614231|ref|ZP_05712001.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|260559479|ref|ZP_05831660.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|293564126|ref|ZP_06678532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1162]
 gi|293570062|ref|ZP_06681142.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1071]
 gi|294618280|ref|ZP_06697862.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1679]
 gi|294623062|ref|ZP_06701949.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           U0317]
 gi|314940061|ref|ZP_07847244.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a04]
 gi|314942532|ref|ZP_07849371.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133C]
 gi|314949362|ref|ZP_07852703.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0082]
 gi|314952822|ref|ZP_07855794.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133A]
 gi|314993745|ref|ZP_07859090.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133B]
 gi|314994810|ref|ZP_07859942.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a01]
 gi|68195742|gb|EAN10179.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
 gi|260074578|gb|EEW62899.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|291587434|gb|EFF19318.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1071]
 gi|291595496|gb|EFF26807.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1679]
 gi|291597535|gb|EFF28699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           U0317]
 gi|291604044|gb|EFF33572.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1162]
 gi|313590994|gb|EFR69839.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a01]
 gi|313591845|gb|EFR70690.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133B]
 gi|313595056|gb|EFR73901.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133A]
 gi|313598753|gb|EFR77598.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133C]
 gi|313640661|gb|EFS05241.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a04]
 gi|313644193|gb|EFS08773.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0082]
          Length = 286

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 12/265 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKN 76
           +   ++N    KK    NQ     ++   E+ F++G H    AL      K+F    ++ 
Sbjct: 15  FEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRG 74

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129
                  +       PVK VP Q ++ +     VHQG+ L   P    +LD +       
Sbjct: 75  EKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEK 133

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K+++GA+EH+P 
Sbjct: 134 KEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPV 193

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R++NL  A+Q++   GF   G         +   K   IAL++G EGKG+ P  ++   
Sbjct: 194 ARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMD 252

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + M G +++LN S AA + +Y
Sbjct: 253 ELLTIPMTGHVQSLNASVAAGLLMY 277


>gi|94989283|ref|YP_597384.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94993172|ref|YP_601271.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94542791|gb|ABF32840.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94546680|gb|ABF36727.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 257

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ +L  N   K++             + LAT+  +A + W        P 
Sbjct: 19  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 70

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           KT+   T        AVHQG  L  +      +D +        + L+++LD + DPHN+
Sbjct: 71  KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 124

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ S GF
Sbjct: 125 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGF 184

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G   +   P +    N K+AL++G EGKG+    ++    M  + M G +++LN S 
Sbjct: 185 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 243

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 244 AAAILMY 250


>gi|113868323|ref|YP_726812.1| rRNA methylase [Ralstonia eutropha H16]
 gi|113527099|emb|CAJ93444.1| rRNA methylase [Ralstonia eutropha H16]
          Length = 247

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 119/236 (50%), Gaps = 9/236 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKT--VPPQTIDK 103
           +N  L G H V+A L   ++ +  + + +     R+     L     V+   V  + +  
Sbjct: 3   KNKLLIGFHAVTARLRQDAKGVTDVYIESARRDRRMQDFVRLAESLGVRLHPVDAERLRG 62

Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + G +  HQG+      +     L   LD +  + LL+VLD V DPHN+GA LR A    
Sbjct: 63  MAGTDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG +  ++K
Sbjct: 122 AHAVIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEK 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L         A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY
Sbjct: 182 SLYDIDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLY 237


>gi|306826620|ref|ZP_07459925.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304431198|gb|EFM34202.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 248

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ +L  N   K++             + LAT+  +A + W        P 
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           KT+   T        AVHQG  L  +      +D +        + L+++LD + DPHN+
Sbjct: 62  KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 115

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ S GF
Sbjct: 116 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGF 175

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G   +   P +    N K+AL++G EGKG+    ++    M  + M G +++LN S 
Sbjct: 176 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 234

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 235 AAAILMY 241


>gi|26991558|ref|NP_746983.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|52783313|sp|Q88DE7|RLMB_PSEPK RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|24986644|gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           KT2440]
          Length = 248

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+ L+   +  RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238


>gi|197122685|ref|YP_002134636.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           K]
 gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           K]
          Length = 256

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPH 145
           V+  P   +D++ G +  HQG+    A      L D +  +Q      LL+VLD V DPH
Sbjct: 50  VRGAPRAKLDRLAGTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RSA A    G++  +  +   +  +AK+++GA+E  P  R++N+   L+++   
Sbjct: 109 NLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEA 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G  ++ L++D ++PL +       AL+LG+EG+G+RP  + T    A + M G + +L+V
Sbjct: 169 GIWSVALAADGERPLGEADLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSV 228

Query: 266 SNAAAVALY 274
           S +AAVALY
Sbjct: 229 SASAAVALY 237


>gi|241888871|ref|ZP_04776177.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
           ATCC 10379]
 gi|241864547|gb|EER68923.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
           ATCC 10379]
          Length = 271

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 138/267 (51%), Gaps = 18/267 (6%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQ-PE----NLFLYGVHTVSAALNNP---SRKIFQLLAT 74
           +++N++ YK+++  N++ +   Q PE       + G + +  A+ +    ++ +FQ    
Sbjct: 1   MKKNNKHYKELRLKNKEQKPQVQTPEVDLDKEVIAGRNAILEAIKSGREINKILFQEGIE 60

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132
           K  L  +   AN       + VP + +D    +   HQG+    AP     LD V N+  
Sbjct: 61  KGRLKSIFAIAN-EKKIICQEVPKRKLDNSTTER--HQGVIAYVAPYSYFELDEVVNNLE 117

Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++LDH+ DPHN+GAI+R+A A     II  KR +   S    K+++GA+EH+P
Sbjct: 118 INKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247
            IR+SNLTDA++K+   GF   G +   +     +I  D  +A+++G EG+G+       
Sbjct: 178 VIRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNE 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              + HL M G I++LN S AA + +Y
Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMY 264


>gi|197334845|ref|YP_002157109.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
 gi|197316335|gb|ACH65782.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
          Length = 247

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSR--KIF--------QLLATKNALARLDWDANLPHPFPVKTV 96
           N +++G+H   A L  +P+R  ++F        +LL   N L +L         F ++ +
Sbjct: 3   NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLG--------FKIQEL 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAI 150
           P +T+D    K A HQG+     P   L    LD +    ++ LL+VLD V DPHN+GA 
Sbjct: 55  PRKTLDD-KAKGANHQGIIARVTPAKQLNEHDLDDIVSQTDNPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S S +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ 
Sbjct: 174 GTAGEATHDVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASG 233

Query: 271 VALY 274
           + L+
Sbjct: 234 ICLF 237


>gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2]
          Length = 245

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 121/236 (51%), Gaps = 14/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQT---IDKIV 105
           +LYG+H + + L     ++ +++  K     RL    N    F +     Q     DK+ 
Sbjct: 6   WLYGLHAMQSVLEQEPERVMEVMVLKGRNDERLTNIVNQARRFGISVQFCQRKALDDKVN 65

Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159
           G++  HQG+     P   +    LD + + +   LL+VLD + DPHN+GA LR+A     
Sbjct: 66  GEQ--HQGVVARAKPARVMDEADLDRILDKESKPLLLVLDGITDPHNLGACLRTADGAGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++  K  S S +  + K A GA E IP I+++NL   L+ +   G   +G + ++ K 
Sbjct: 124 HAVVVPKDKSASLNGTVRKVACGAAEVIPLIQVTNLARTLKHLQDKGLWIVGTAGETDKT 183

Query: 220 LEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L  +IK D   AL++GAEGKG+R  T+ET   +  L M G + +LNVS A  V LY
Sbjct: 184 L-YDIKLDGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVSSLNVSVATGVCLY 238


>gi|257886070|ref|ZP_05665723.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257821926|gb|EEV49056.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
          Length = 286

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 12/265 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKN 76
           +   ++N    KK    NQ     ++   E+ F++G H    AL      K+F    ++ 
Sbjct: 15  FEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHVAVEALQQGRGNKLFLQEDSRG 74

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129
                  +       PVK VP Q ++ +     VHQG+ L   P    +LD +       
Sbjct: 75  EKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEK 133

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K+++GA+EH+P 
Sbjct: 134 KEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPV 193

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R++NL  A+Q++   GF   G         +   K   IAL++G EGKG+ P  ++   
Sbjct: 194 ARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMD 252

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + M G +++LN S AA + +Y
Sbjct: 253 ELLTIPMTGHVQSLNASVAAGLLMY 277


>gi|167035924|ref|YP_001671155.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166862412|gb|ABZ00820.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           GB-1]
          Length = 248

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+ L+   +  RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERRELDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 185 YQQDLTGPLVVIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238


>gi|170732873|ref|YP_001764820.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|169816115|gb|ACA90698.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           cenocepacia MC0-3]
          Length = 247

 Score =  115 bits (289), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105
            LYG H V+A L + +  + ++L  +    R   D    H      V     D+     +
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQD--FLHAAKEAGVRLIAADETRLWGL 63

Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                HQG+   +E  PL   LS  LD +    LL+VLD V DPHN+GA LR A +    
Sbjct: 64  AHTERHQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L
Sbjct: 124 AVIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 184 YETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237


>gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured
           Desulfobacterium sp.]
          Length = 270

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 137/256 (53%), Gaps = 15/256 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWD 84
           R++K ++    KSR       + LYG+H V  A+    RK++++   K   + L R    
Sbjct: 3   RNFKSLE----KSRLEMDKSEI-LYGIHPVFEAVRAGRRKVYEIYIAKQKDSTLLRNISK 57

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA--PLLS--PTLDAV--RNSQLLMVL 138
              P   P+ +V P  + KI G +   Q +A + +  PL++    L+++  +N   L++L
Sbjct: 58  LAEPAKIPLISVKPDHLTKITGSD-FQQNIAAKVSEYPLIAFEDILNSITQKNYDFLLLL 116

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+GA+ R+A+     GI+ TK  S S +  ++K+++GALEHI   +++N+  +
Sbjct: 117 DTVVDPQNLGALARTALCAGVSGIVITKDRSASPTPAVSKASAGALEHIFLSKVTNMVSS 176

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +++M   G   +G+ + +  P+        IAL++G+EGKG+R   +     +  +   G
Sbjct: 177 IKEMKDRGIWVVGMDAMADMPVFSCDLKGPIALVIGSEGKGIRQLVKANCDFLVSIPQKG 236

Query: 259 IIKALNVSNAAAVALY 274
            + +LN S A AVA+Y
Sbjct: 237 EVSSLNASAAGAVAMY 252


>gi|38234534|ref|NP_940301.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae]
          Length = 313

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 135/266 (50%), Gaps = 15/266 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQK--SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKN 76
           A+ R  H  YKK     ++   RH  +  +  + G + V   L+   P+  ++ +  TKN
Sbjct: 40  AEDREYHAAYKKKMERKRRDQGRHVKEETSELVVGRNPVVECLHAKVPATTLYIVEGTKN 99

Query: 77  ALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LD 127
              RL     + H    P+  VP   +D + G   +HQG+ L+  P    T       ++
Sbjct: 100 D-NRLSEAVQIAHSRGIPMIEVPRHEMDLMTGN-GMHQGIGLQIPPYKYTTVFDLIGRIN 157

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +     +++VLD++ DP N+GA++RS  AF   G++  +R S S +AV  ++++G    +
Sbjct: 158 STGEDGMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARL 217

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  + +N+T A+Q+    G+Q +GL +     L+    +  + +++G+EGKG+    ++ 
Sbjct: 218 PVAKATNITRAVQEFQQNGYQVVGLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLVRDN 277

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
             S+  + M G +++LN S AA V L
Sbjct: 278 CDSLMSIPMAGWVESLNASVAAGVVL 303


>gi|296877290|ref|ZP_06901330.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
 gi|296431810|gb|EFH17617.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
          Length = 242

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 23/241 (9%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99
           N  +YGVH V+ AL  N   K++  + L  KN     ALA             +   P +
Sbjct: 4   NDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAA-------EKKVSISWTPKK 56

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
           T+ ++  + AVHQG  L  A      L  +        + LL++LD + DPHN+G+ILR+
Sbjct: 57  TLQEMT-EGAVHQGFVLRVAAFAYTDLAVILKQTVQEENPLLLILDGLTDPHNLGSILRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A +  G+I  K  +   + V++K+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 116 ADATNVSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTD 175

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +   P  Q     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +
Sbjct: 176 MNG-TPSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILM 234

Query: 274 Y 274
           Y
Sbjct: 235 Y 235


>gi|298484907|ref|ZP_07003006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160594|gb|EFI01616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 253

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L ++P R     LA      R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL  AL+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARALEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238


>gi|293553641|ref|ZP_06674265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1039]
 gi|291602216|gb|EFF32444.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1039]
          Length = 286

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 12/265 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKN 76
           +   ++N    KK    NQ     ++   E+ F++G H    AL      K+F    ++ 
Sbjct: 15  FEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRG 74

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129
                  +       PVK VP Q ++ +     VHQG+ L   P    +LD +       
Sbjct: 75  EKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEK 133

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K+++GA+EH+P 
Sbjct: 134 KEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEHVPV 193

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R++NL  A+Q++   GF   G         +   K   IAL++G EGKG+ P  ++   
Sbjct: 194 ARVTNLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMD 252

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + M G +++LN S AA + +Y
Sbjct: 253 ELLTIPMTGHVQSLNASVAAGLLMY 277


>gi|114778983|ref|ZP_01453770.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
           ferrooxydans PV-1]
 gi|114550782|gb|EAU53352.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
           ferrooxydans PV-1]
          Length = 247

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 112/201 (55%), Gaps = 16/201 (7%)

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           K ALARL     +PH   V  +       +   EA  + + +ETAP++            
Sbjct: 53  KEALARLA--EGVPHQGVVAKMVAAGAQAVPTFEAWLKTVDMETAPMV------------ 98

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRIS 193
            ++LD V DPHN+GA +R+A A  C  +I  K ++    S V+AK+A GAL  +P +R+ 
Sbjct: 99  -LLLDQVTDPHNLGACVRTAEAAGCAAVIVLKDHAADVHSPVVAKAACGALSRLPVLRVI 157

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++++   GF T+GL+ +++  +     +   A+++G+E KG+R   +ET   + H
Sbjct: 158 NMKRCIEQLQQQGFWTVGLAGEAELSIYDAKLSGATAVVMGSEDKGVRRLVRETCDQLIH 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG++++LNVS A  VAL+
Sbjct: 218 IPMPGVVESLNVSVATGVALF 238


>gi|329914600|ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545100|gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 242

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPP--QTIDKIVG 106
            ++G H V+A L + +  + ++ + T     R+           V+ +    Q +  +VG
Sbjct: 1   MIFGFHAVTARLRHEASTVEEIYVDTARHDQRMKDMLKAAAAVKVRVIQADDQRLSNMVG 60

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  +   +     L   LDA+    LL+VLD + DPHN+GA LR A       
Sbjct: 61  TRR-HQGVVAKAGEVSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHA 119

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A  AK ASGA E +PYI ++NL   L+ +   G   IG + D+++ L 
Sbjct: 120 VIAPKDRAVGLNATAAKVASGAAESVPYITVTNLARTLRDLKDRGIWLIGTTEDAEQTLY 179

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q       ALI+G+EG+G+R  T ET   + H+ M G +++LNVS A+ V L+
Sbjct: 180 QGDFTGPTALIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLF 232


>gi|327472394|gb|EGF17825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           sanguinis SK408]
          Length = 242

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       +A+       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTTGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|332359265|gb|EGJ37086.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 242

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       +A+       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 TGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|325517967|gb|EGC97790.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 247

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   LS  LD +    LL+VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARVEDIPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L     
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTSDEASATLHDTRL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 189 DGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237


>gi|220917468|ref|YP_002492772.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 256

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 109/189 (57%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPH 145
           V+  P   +D++ G +  HQG+    A      L D +  +Q      LL+VLD V DPH
Sbjct: 50  VRAAPRAKLDRLAGTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RSA A    G++  +  +   +  +AK+++GA+E  P  R++N+   L+++   
Sbjct: 109 NLGAIIRSAHALGSHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEA 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G  ++ L++D ++PL +       AL+LG+EG+G+RP  + T    A + M G + +L+V
Sbjct: 169 GIWSVALAADGERPLGEVDLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSV 228

Query: 266 SNAAAVALY 274
           S +AAVALY
Sbjct: 229 SASAAVALY 237


>gi|307247018|ref|ZP_07529072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856470|gb|EFM88619.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 259

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A L+N   ++ ++L  K           N L RL           V+ V  Q
Sbjct: 17  IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLG--------ISVQQVNRQ 68

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
           T+D     E VHQG+  +  P   L    LDA+   + +  L++LD V DPHN+GA LR+
Sbjct: 69  TLDNKAQGE-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRT 127

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   D +I  K  S   ++   K A GA E +P IR++NL      LQ+ H+ W    
Sbjct: 128 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIW---I 184

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   + Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A 
Sbjct: 185 VGTAGEATSGIYQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 244

Query: 270 AVALY 274
            V L+
Sbjct: 245 GVCLF 249


>gi|322386796|ref|ZP_08060420.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           cristatus ATCC 51100]
 gi|321269078|gb|EFX52014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           cristatus ATCC 51100]
          Length = 243

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 126/237 (53%), Gaps = 13/237 (5%)

Query: 47  ENLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +N  +YGVH V+ AL  N   K++    L  KN     D  A       +   P +T+ +
Sbjct: 3   KNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVSKIKDLAA--AKKVSISWSPKKTLQE 60

Query: 104 IVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAF 157
           +    AVHQG  L  +      L D ++ ++     LL++LD + DPHN+G+ILR+A A 
Sbjct: 61  MT-DGAVHQGFVLRVSEFAYADLADVLKKAEQEENPLLLILDGLTDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G      
Sbjct: 120 NVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG- 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P+ +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 TPVHKWNTAGKLALIIGNEGKGISSNIKKQVDEMLTIPMNGHVQSLNASVAAAILMY 235


>gi|307249241|ref|ZP_07531238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251563|ref|ZP_07533470.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306858765|gb|EFM90824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861027|gb|EFM93033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 259

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A L+N   ++ ++L  K           N L RL           V+ V  Q
Sbjct: 17  IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLG--------ISVQQVNRQ 68

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
           T+D     E VHQG+  +  P   L    LDA+   + +  L++LD V DPHN+GA LR+
Sbjct: 69  TLDNKAQGE-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRT 127

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   D +I  K  S   ++   K A GA E +P IR++NL      LQ+ H+ W    
Sbjct: 128 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIW---I 184

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   + Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A 
Sbjct: 185 VGTAGEATSGIYQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 244

Query: 270 AVALY 274
            V L+
Sbjct: 245 GVCLF 249


>gi|270293024|ref|ZP_06199235.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
 gi|270279003|gb|EFA24849.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
          Length = 253

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 13/236 (5%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YGVH V+ AL  N   K++    L  KN     +  A       +     +++ ++
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELAA--EKKVSISWTSKKSLSEM 72

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      L+ +        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 73  T-EGAVHQGFVLRVSEFAYSELEHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATN 131

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   
Sbjct: 132 VSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-T 190

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P  +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 191 PCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMY 246


>gi|313500862|gb|ADR62228.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Pseudomonas
           putida BIRD-1]
          Length = 248

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+ L+   +  RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++ + +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238


>gi|52078591|ref|YP_077382.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
           ATCC 14580]
 gi|52783952|ref|YP_089781.1| YacO [Bacillus licheniformis ATCC 14580]
 gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
           ATCC 14580]
 gi|52346454|gb|AAU39088.1| YacO [Bacillus licheniformis ATCC 14580]
          Length = 249

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 127/235 (54%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V   L +  R++++L   +N +   A+   D    +   +  VP + +D++V 
Sbjct: 7   YVIGKNAVIETLKS-GRELYKLWMAENTVKGQAQQVVDLAAKNGVTIHYVPRKKLDQMVS 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+  + A      LD +      RN Q  ++VLD + DPHN+G+I+R+A A   
Sbjct: 66  GQ--HQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTADAVGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI+  KR +   +  +AK+++GA+EHIP ++++NL+  L++M   G   +G  +  ++ 
Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDASGQQD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y
Sbjct: 184 YRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMY 238


>gi|170692230|ref|ZP_02883393.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
           C4D1M]
 gi|170142660|gb|EDT10825.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
           C4D1M]
          Length = 247

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+      +     L+  LD +  S LL+VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARAGDMPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++KK L +   
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTAGEAKKSLYETEL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +A+++GAEG+G+R  T +T   +  + M G +++LNVS A+ V L+
Sbjct: 189 DGPVAIVMGAEGEGMRRLTHDTCDIVMQIPMAGTVESLNVSVASGVCLF 237


>gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp.
           HTCC2999]
          Length = 247

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVG 106
           +LYG+H ++A L    ++I +L +A      RL    NL       ++    + +D    
Sbjct: 7   WLYGIHALTAVLEREPQRILELYIAKGRDDERLHKLINLARKEGISIQFCNKKVLDDKSK 66

Query: 107 KEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCD 160
            E+ HQG+     P   L    LD + +      L+VLD V DPHN+GA+LRSA A   D
Sbjct: 67  GES-HQGVVARAYPAKVLTETDLDTIISQSAKPFLLVLDGVTDPHNLGAVLRSADAAGVD 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S S +A + K A GA + IP I+++NL   L ++       +G + ++++ +
Sbjct: 126 AVIVPKDKSASLNATVRKVACGAADVIPLIQVTNLARTLSELQEQQIWVVGTAGEARQSV 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   +AL++GAEGKG+R  T+E    +  L M G + +LNVS A  + LY
Sbjct: 186 FDCDMAGPVALVMGAEGKGMRRLTRERCDELIKLPMLGTVSSLNVSVATGICLY 239


>gi|94311029|ref|YP_584239.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
           CH34]
 gi|93354881|gb|ABF08970.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
           CH34]
          Length = 247

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 117/233 (50%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKE 108
            L G H V+A L   ++ +  +    N   R   D   L     V T+ P   +++ G  
Sbjct: 6   LLIGFHAVNARLRQNAQSVSDIYIEANRRDRRMQDFIRLAESLGV-TLHPVDAERLRGMA 64

Query: 109 AV--HQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+      +  A  L   LD +  + LL++LD V DPHN+GA LR A       
Sbjct: 65  GTDRHQGVVARADDVSLALNLDELLDGIEGTPLLLLLDGVTDPHNLGACLRVADGAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG +  ++K L 
Sbjct: 125 VIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKALY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY
Sbjct: 185 DVDLKGPTAIVMGAEGEGMRRLTRETCDELVAIPMAGGVESLNVSVASGVCLY 237


>gi|206559920|ref|YP_002230684.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|198035961|emb|CAR51853.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 247

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 99/169 (58%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   LS  LD +    LL+VLD V DPHN+GA LR A +     +I  
Sbjct: 69  HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L +   
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLYETKL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 237


>gi|262037386|ref|ZP_06010850.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
           goodfellowii F0264]
 gi|261748548|gb|EEY35923.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
           goodfellowii F0264]
          Length = 244

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           LE        L   ++  ++++LD + DP N GAI+RSA  F  DGI+   R +   +  
Sbjct: 84  LELTEFFEKVL--AKDKSIVVILDQIQDPRNFGAIIRSAECFGVDGIVIQDRNNVKVTET 141

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + KS++GA+EH+  I+++N++D + K   +G++  G  +D +    +E    K+ L+LG+
Sbjct: 142 VVKSSTGAIEHVDIIKVTNISDTIDKFKKYGYKVYGAEADGENLYYEESYPKKVCLVLGS 201

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           EG G+R K +E       +H+ G   +LNVS A  + L
Sbjct: 202 EGNGMRKKVREHCDKTLKIHLKGQTNSLNVSVAGGIIL 239


>gi|254521763|ref|ZP_05133818.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
           SKA14]
 gi|219719354|gb|EED37879.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
           SKA14]
          Length = 247

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++ GV+ V++++ N +  + ++L    A    L  ++ +A       V+ V  Q +D  V
Sbjct: 7   WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENAR-RKGIDVRKVNAQALDG-V 64

Query: 106 GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G    HQG+A   A         L   + A     LL+VLD V DPHN+GA LRSA A  
Sbjct: 65  GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A + K+++GA + IP + ++NL+  L+ +   G    GL+ ++  
Sbjct: 125 ATAVIIPKDKSATVNATVRKTSAGAADRIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L Q      IAL+LG E  GLR  T+E    +  + MPG I++LNVS AA V+L+
Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLF 240


>gi|32033775|ref|ZP_00134060.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207530|ref|YP_001052755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975500|ref|YP_001651093.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149311|ref|YP_001967836.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250521|ref|ZP_07336718.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251865|ref|ZP_07338036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244843|ref|ZP_07526942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253797|ref|ZP_07535651.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256063|ref|ZP_07537851.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258253|ref|ZP_07539996.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260494|ref|ZP_07542188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307262624|ref|ZP_07544254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126096322|gb|ABN73150.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875601|gb|ABY68649.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914442|gb|ACE60694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649295|gb|EFL79480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650509|gb|EFL80668.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854288|gb|EFM86494.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863281|gb|EFM95221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865485|gb|EFM97380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867713|gb|EFM99558.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869806|gb|EFN01589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306872047|gb|EFN03761.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 247

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 122/245 (49%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A L+N   ++ ++L  K           N L RL           V+ V  Q
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLG--------ISVQQVNRQ 56

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
           T+D     E VHQG+  +  P   L    LDA+   + +  L++LD V DPHN+GA LR+
Sbjct: 57  TLDNKAQGE-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   D +I  K  S   ++   K A GA E +P IR++NL      LQ+ H+ W    
Sbjct: 116 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIW---I 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   + Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGEATSGIYQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232

Query: 270 AVALY 274
            V L+
Sbjct: 233 GVCLF 237


>gi|71904302|ref|YP_281105.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94991229|ref|YP_599329.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94995142|ref|YP_603240.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|71803397|gb|AAX72750.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94544737|gb|ABF34785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94548650|gb|ABF38696.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 257

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ +L  N   K++             + LAT+  +A + W        P 
Sbjct: 19  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 70

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           KT+   T        AVHQG  L  +      +D +        + L+++LD + DPHN+
Sbjct: 71  KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 124

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF
Sbjct: 125 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGF 184

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G   +   P +    N K+AL++G EGKG+    ++    M  + M G +++LN S 
Sbjct: 185 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 243

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 244 AAAILMY 250


>gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 230

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 98/172 (56%), Gaps = 5/172 (2%)

Query: 109 AVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           AVH G+  +        L   LD  R  + LM LD V DPHN+GAILRS  A + DG+I 
Sbjct: 59  AVHNGVVADVKDYQYLELDVVLDKTRRQRFLM-LDEVQDPHNLGAILRSVEATNYDGVII 117

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +K++    + V+AK++SGA+EH+  I +SNL   + K+    F  +G + ++    ++  
Sbjct: 118 SKKHQVPLTGVVAKTSSGAIEHVKLILVSNLYQTILKLQKEDFLVVGTAGEATASYKEIP 177

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           KN  + +I+G EG GLRP  ++    +  + M G + +LNVS A A+ LY T
Sbjct: 178 KNQNLLIIMGNEGFGLRPLIKKGCDLLVSIPMLGKVNSLNVSVATALLLYET 229


>gi|134295618|ref|YP_001119353.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134138775|gb|ABO54518.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 247

 Score =  115 bits (287), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 99/169 (58%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +E  PL   LS  LD ++   LL+VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG + ++   L     
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTADEASGTLYDTKL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 189 DGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLY 237


>gi|307543249|gb|ADN44264.1| TrmH family RNA methyltransferase [Pseudomonas syringae]
          Length = 255

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG+H V A L +  +++ Q+ LA      R+     L     +     +  +  V  E 
Sbjct: 7   IYGIHAVEALLRHHPKRVKQVWLAESRNDPRVQTLIALAAENRIDVGNAERREMDVWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L+  LD    + L++VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLNELLDRTEGAPLILVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + ++++ L  
Sbjct: 127 IVPKDKSATLTPTVQKVACGAAEVIPLVAVTNLAATLKKLQQRGLWIVGTAGEAEQELYD 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       LI+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDMTGPTILIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238


>gi|254506517|ref|ZP_05118659.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus 16]
 gi|219550691|gb|EED27674.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus 16]
          Length = 245

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 121/241 (50%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L     +  +    K    R D D  +P  +   V  V  Q +    
Sbjct: 3   NEFIYGIHAVKAVLECEPERFIEAFVLK---GRQD-DRLMPILNELQVCGVSIQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+     P   L    LD +     S LL+VLD V DPHN+GA LR+
Sbjct: 59  LDDKARG--ANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G +
Sbjct: 117 ADAAGVAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ + + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L
Sbjct: 177 GEATQDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|194365073|ref|YP_002027683.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
           R551-3]
 gi|194347877|gb|ACF51000.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
          Length = 247

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++ GV+ V++++ N +  + ++L    A    L  ++ +A       V+ V  Q +D  V
Sbjct: 7   WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENAR-RKGIDVRKVNSQALDG-V 64

Query: 106 GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G    HQG+A   A         L   + A     LL+VLD V DPHN+GA LRSA A  
Sbjct: 65  GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S S +A + K+++GA + IP + ++NL+  L+ +   G    GL+ ++  
Sbjct: 125 ATAVIIPKDKSASVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L Q      IAL+LG E  GLR  T+E    +  + MPG I++LNVS AA V+L+
Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLF 240


>gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2]
 gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2]
          Length = 249

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V   L +  R++++L   +N +   A+   D        +  VP + +D++V 
Sbjct: 7   YVIGKNAVIETLKS-GRELYKLWMAENTVKGQAQQVVDLAAKKGVTIHYVPRKKLDQMVS 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+  + A      LD +      RN Q  ++VLD + DPHN+G+I+R+A A   
Sbjct: 66  GQ--HQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTADAVGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI+  KR +   +  +AK+++GA+EHIP ++++NL+  L++M   G   +G  +  ++ 
Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDASGQQD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y
Sbjct: 184 YRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMY 238


>gi|291613895|ref|YP_003524052.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584007|gb|ADE11665.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
           lithotrophicus ES-1]
          Length = 247

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 9/236 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103
           E+  ++G H V+A +   +  + ++      K+  AR        +   +  V  + +D 
Sbjct: 3   ESRIIHGFHAVTARIRQNADSVLEMYVDTQRKDPRARDLLKLAESNGVRIIQVDGKRLDG 62

Query: 104 IVGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + G  + HQG+     A +    L   LD +    LL+VLD V DPHN+GA LRSA AF 
Sbjct: 63  MAGN-SRHQGVVARVDAAQKVQHLDDVLDTLTEPALLLVLDGVQDPHNLGACLRSADAFG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  +   +A + K A GA + +PYI ++NL   L+++       IG+  +++ 
Sbjct: 122 VHAVIAPKDRAVGINATVEKVACGAAQTVPYITVTNLARTLRELQERDIWVIGMDGEAET 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L        +A +LGAEG+GLR  T+ET   +  + M G +++LNVS +  V LY
Sbjct: 182 NLYDVQHQGAVAWVLGAEGEGLRRLTRETCDQLVRIPMQGSVESLNVSVSTGVCLY 237


>gi|21911205|ref|NP_665473.1| SpoU family tRNA/rRNA methyltransferase [Streptococcus pyogenes
           MGAS315]
 gi|28896582|ref|NP_802932.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|21905417|gb|AAM80276.1| putative tRNA/rRNA methyltransferase, spoU family [Streptococcus
           pyogenes MGAS315]
 gi|28811836|dbj|BAC64765.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
          Length = 248

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ +L  N   K++             + LAT+  +A + W        P 
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           KT+   T        AVHQG  L  +      +D +        + L+++LD + DPHN+
Sbjct: 62  KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 115

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF
Sbjct: 116 GSILRTADATNVCGVIIPKHRSVCVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGF 175

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G   +   P +    N K+AL++G EGKG+    ++    M  + M G +++LN S 
Sbjct: 176 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 234

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 235 AAAILMY 241


>gi|56807805|ref|ZP_00365654.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
 gi|209560082|ref|YP_002286554.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
 gi|209541283|gb|ACI61859.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
          Length = 248

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ +L  N   K++             + LAT+  +A + W        P 
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           KT+   T        AVHQG  L  +      +D +        + L+++LD + DPHN+
Sbjct: 62  KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 115

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF
Sbjct: 116 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGF 175

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G   +   P +    N K+AL++G EGKG+    ++    M  + M G +++LN S 
Sbjct: 176 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 234

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 235 AAAILMY 241


>gi|15675741|ref|NP_269915.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|19746851|ref|NP_607987.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|71911465|ref|YP_283015.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|139474428|ref|YP_001129144.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|13622961|gb|AAK34636.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|19749091|gb|AAL98486.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes
           MGAS8232]
 gi|71854247|gb|AAZ52270.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|134272675|emb|CAM30946.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 248

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ +L  N   K++             + LAT+  +A + W        P 
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           KT+   T        AVHQG  L  +      +D +        + L+++LD + DPHN+
Sbjct: 62  KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 115

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF
Sbjct: 116 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGF 175

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G   +   P +    N K+AL++G EGKG+    ++    M  + M G +++LN S 
Sbjct: 176 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 234

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 235 AAAILMY 241


>gi|322411058|gb|EFY01966.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 248

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 19/239 (7%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKNA--LARLDWDANLPHPF-PVKTVPPQTI 101
           N  +YGVH V+ +L+ N   K++  + L  KN   + RL  +  +   + P KT+   T 
Sbjct: 10  NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155
                + AVHQG  L  +      LD +       ++ L+++LD + DPHN+G+ILR+A 
Sbjct: 69  -----EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTAD 123

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A +  G+I  K  +   + V++K+++GA+EH+   R++NL+  L K+ + GF T G   +
Sbjct: 124 ATNVCGVIIPKHRAVGVTPVVSKTSTGAVEHVLIARVTNLSQTLDKLKAKGFWTFGTDMN 183

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 184 G-TPSHRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 241


>gi|184154739|ref|YP_001843079.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|183226083|dbj|BAG26599.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
          Length = 251

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 19/245 (7%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSR--KIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99
           T++  + F+ G H   AAL +     K+F     K +A+A+L   A   H   +  VP  
Sbjct: 3   TNEENSEFIIGRHPAMAALKSDQEINKVFIQKGLKTDAIAQLVKSAKERH-LVISNVPKT 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGAILR 152
            +D++   +  HQG+AL  A     T+D      A ++ +   ++LD + DPHN+G+ILR
Sbjct: 62  KLDQMTAGQN-HQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSILR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQT 209
           +A A    GII  KR S   ++V+AK+++GA+EH+P  R++NL      LQK   W F T
Sbjct: 121 TADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLFGT 180

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               +D ++    + K   +AL++G EGKG+ P  ++T   M  + M G +++LN S AA
Sbjct: 181 DMQGTDCRR---WDAKG-AVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAA 236

Query: 270 AVALY 274
           ++ +Y
Sbjct: 237 SLLIY 241


>gi|312884705|ref|ZP_07744406.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367618|gb|EFP95169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 246

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 10/236 (4%)

Query: 48  NLFLYGVHTVSAALN-NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N F+YG+H V A L   P R I  F L   ++   R   +        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLRPILNDLQVCGVSIQLMTRKTLDD- 61

Query: 105 VGKEAVHQGLALETAP--LLSP-TLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQG+     P  LL+   LD   A   + LL+VLD V DPHN+GA LR+A A  
Sbjct: 62  KAKGANHQGIMARVKPAKLLNEHDLDNIIAQHTAPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P IR++NL   ++ +   G   +G + ++ +
Sbjct: 122 VAAVIVPKDKSANINATVSKVACGAAETVPLIRVTNLARTMRALQEQGVWFVGTAGEATQ 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+
Sbjct: 182 DIYQAKLTGALAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGVCLF 237


>gi|50915006|ref|YP_060978.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|50904080|gb|AAT87795.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 257

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 35/247 (14%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWDANLPHPFPV 93
           N  +YGVH V+ +L  N   K++             + LAT+  +A + W        P 
Sbjct: 19  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVA-ISWT-------PK 70

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
           KT+   T        AVHQG  L  +      +D +        + L+++LD + DPHN+
Sbjct: 71  KTLSQMT------DGAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNL 124

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A +  G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF
Sbjct: 125 GSILRTADATNVCGVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQILDKLKARGF 184

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G   +   P +    N K+AL++G EGKG+    ++    M  + M G +++LN S 
Sbjct: 185 WIFGTDMNG-TPSDCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASV 243

Query: 268 AAAVALY 274
           AAA+ +Y
Sbjct: 244 AAAILMY 250


>gi|114331604|ref|YP_747826.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114308618|gb|ABI59861.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosomonas eutropha C91]
          Length = 260

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 96/171 (56%), Gaps = 5/171 (2%)

Query: 111 HQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+A     L+    L   LD +     L+VLD V DPHN+GA LR A AF    +I  
Sbjct: 69  HQGVAAHVMKLQQYTALEDLLDGLTEPAFLLVLDGVKDPHNLGACLRVADAFGVHAVIVP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  +   SA + K ASGA++ +P+  ++NL   L+++   G   +G ++D+   L+    
Sbjct: 129 KDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEEGIWIVGTTADASDTLDSITL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              IA +LGAEG+G+R  T+ET   +  + M G I++LNVS +A + L+ T
Sbjct: 189 TRPIAWVLGAEGEGMRRLTRETCDQLVSIPMSGSIESLNVSVSAGICLFET 239


>gi|327468344|gb|EGF13829.1| RNA methyltransferase [Streptococcus sanguinis SK330]
          Length = 242

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +      +++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQKDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|315221313|ref|ZP_07863236.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           anginosus F0211]
 gi|315189672|gb|EFU23364.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           anginosus F0211]
          Length = 242

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YGVH V+ AL  N   K++    L  KN     D  A       +     +T+ ++
Sbjct: 4   NDIVYGVHAVTEALMTNTGNKLYIQDDLRGKNVAKMKDLAA--EKKVSISWTSKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  +       +A+        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  T-DGAVHQGFVLRVSEFAYTDFEAMLKMAEREENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+ AL K+   GF   G   +   
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQALDKLKHAGFWIFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 180 PSTKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235


>gi|104783862|ref|YP_610360.1| RNA methyltransferase [Pseudomonas entomophila L48]
 gi|95112849|emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           entomophila L48]
          Length = 247

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++ Q+ L+   +  R+     L     V+    +  +     E 
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S S +AV+ K A GA E IP + ++NL+  L+K+   G   +G + ++++ + Q
Sbjct: 127 VIPKDKSASLTAVVRKVACGAAEVIPLVAVTNLSRTLEKLQQRGLWVVGTAGEAEQEIYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLF 238


>gi|262281995|ref|ZP_06059764.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
 gi|262262449|gb|EEY81146.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
          Length = 243

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTTGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|299821035|ref|ZP_07052923.1| RNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816700|gb|EFI83936.1| RNA methyltransferase [Listeria grayi DSM 20601]
          Length = 249

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 107/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPH 145
           ++ VP Q IDK+V  E  HQG+A + +      LD      + RN Q   ++LD + DPH
Sbjct: 52  IQFVPKQKIDKVV--EGAHQGVAAQISAYQYAELDELFERASTRNEQPFFILLDELEDPH 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A A    GII   R S   +  +AK+++GA+EHIP +R++NL    D L+  
Sbjct: 110 NLGSIMRTADAVGAHGIIIPNRRSVGLTQTVAKASTGAIEHIPVVRVTNLNKTIDVLKDR 169

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    + +++G+EG G+    +E    + HL M G + +
Sbjct: 170 GLWIFGTDAKGSSDYRTMDVDM---PLGIVIGSEGAGMSRLVREKCDFLVHLPMKGKVTS 226

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 227 LNASVAASILLY 238


>gi|212695900|ref|ZP_03304028.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677023|gb|EEB36630.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 237

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 9/199 (4%)

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D N+P  F  K        KI G    HQG+ +E        LD +++ + LM+LD + D
Sbjct: 45  DKNVPIFFEDK----DYFSKISGN---HQGVEIEVEDYKYKDLDDLKDKKRLMILDQIED 97

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+RSA AF  DGI+ ++R S   ++ + K+++GA+ +I    + N+  A++++ 
Sbjct: 98  PHNLGAIIRSAEAFGFDGIVISERRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIK 157

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F   GL+ ++   + Q     KIAL++G EGKGL    +E    +  + M G I +L
Sbjct: 158 EENFWVYGLAGEADGDITQTDLTGKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSL 217

Query: 264 NVSNAAAVALY--ITQNHF 280
           N S A+A+A+Y  + QN F
Sbjct: 218 NASVASAIAIYESLRQNGF 236


>gi|327462795|gb|EGF09117.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 242

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             E VHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  DGE-VHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|256546104|ref|ZP_05473457.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
           2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
           51170]
 gi|256398221|gb|EEU11845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
           2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
           51170]
          Length = 237

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 112/199 (56%), Gaps = 9/199 (4%)

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D N+P  +  K        KI G    HQG+ +E        LD +++ + LM+LD + D
Sbjct: 45  DENVPIFYEDK----DYFSKISGN---HQGVEIEVEDYKYKDLDDLKDKKRLMILDQIED 97

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+RSA AF  DGII ++R S   ++ + K+++GA+ +I    + N+  A++++ 
Sbjct: 98  PHNLGAIIRSAEAFGFDGIIISERRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIK 157

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F   GL+ +++  + Q     KIAL++G EGKGL    +E    +  + M G I +L
Sbjct: 158 KENFWVYGLAGEAEGDITQTDLTGKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSL 217

Query: 264 NVSNAAAVALY--ITQNHF 280
           N S A+A+A+Y  + QN F
Sbjct: 218 NASVASAIAIYESLRQNGF 236


>gi|324992441|gb|EGC24362.1| RNA methyltransferase [Streptococcus sanguinis SK405]
          Length = 242

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 THKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|254283118|ref|ZP_04958086.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR51-B]
 gi|219679321|gb|EED35670.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR51-B]
          Length = 252

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 16/237 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++G+H V +AL +    + +++  K      +  L+  A       ++  P   +D++V 
Sbjct: 5   IFGLHAVESALKHRPEALLRVMLQKGRDDKRMRELETLAR-NQGVTIERRPRTELDRLV- 62

Query: 107 KEAVHQGLALETAPLL-SPTLD--------AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +  HQG+  E       P LD        A  ++ LL+VLD V DPHN+GA LRSA A 
Sbjct: 63  -DGRHQGVVAEIEQGADGPPLDEAGLMQRVAETSTPLLLVLDGVTDPHNLGACLRSADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +  + K A GA E +P++R++NL   L  + + G   +G + D++
Sbjct: 122 GVTAVIVPKNNSADLTPAVRKVACGAAEAVPFVRVTNLVRTLAALQAEGVWVVGTTGDAE 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + L  +     IAL++GAEG+G+R  TQE    + +L M G + +LNVS A  V L+
Sbjct: 182 QSLYAQDFAGPIALVMGAEGQGMRRLTQEQCDFLVYLPMAGEVSSLNVSVATGVCLF 238


>gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           334]
 gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
 gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           334]
 gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 270

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 10/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG+H VSA L+   ++I +L   +N    RL           VK +     +       
Sbjct: 27  IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86

Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            HQG+         L+ + LLS  L       LL++LD V DPHN+GA LRSA AF    
Sbjct: 87  KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 145

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  ++
Sbjct: 146 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 205

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q  
Sbjct: 206 EIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 263


>gi|323526270|ref|YP_004228423.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383272|gb|ADX55363.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1001]
          Length = 247

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+      L     L+  LD +  S L++VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARAGDLPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L +   
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIVGTAGEATKSLYETEL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+
Sbjct: 189 DGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237


>gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
 gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 270

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 10/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG+H VSA L+   ++I +L   +N    RL           VK +     +       
Sbjct: 27  IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86

Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            HQG+         L+ + LLS  L       LL++LD V DPHN+GA LRSA AF    
Sbjct: 87  KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 145

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  ++
Sbjct: 146 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 205

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q  
Sbjct: 206 EIDLTGDIAIVLGSEGGGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 263


>gi|325689008|gb|EGD31016.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 242

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 TGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|66043847|ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254554|gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330971568|gb|EGH71634.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 251

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L ++P R     LA      R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238


>gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 249

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V   L +  RK+++L   +N +   A+   +        ++ VP + +D++V 
Sbjct: 7   YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQFVPRKKLDQMV- 64

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+  + A      LD +      RN Q   ++LD + DPHN+G+I+R+A A   
Sbjct: 65  -EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTADAVGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI+  KR +   +A +AK+++GA+EHIP ++++NL   L +M   G   +G  + +++ 
Sbjct: 124 HGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDASARED 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    +AL++G+EG+G+    +E    +  L M G + +LN S AA + +Y
Sbjct: 184 YRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238


>gi|260663232|ref|ZP_05864124.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552424|gb|EEX25475.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           fermentum 28-3-CHN]
          Length = 251

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 19/245 (7%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSR--KIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99
           T++  + F+ G H   AAL +     K+F     K +A+A+L   A   H   +  VP  
Sbjct: 3   TNEENSEFIIGRHPAMAALKSDQEINKVFIQKGLKTDAIAQLVKSAKERH-LVISNVPKT 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGAILR 152
            +D++   +  HQG+AL  A     T+D      A ++ +   ++LD + DPHN+G+ILR
Sbjct: 62  KLDQMTAGQN-HQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSILR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQT 209
           +A A    GII  KR S   ++V+AK+++GA+EH+P  R++NL      LQK   W F T
Sbjct: 121 TADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLFGT 180

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               +D ++    + K   +AL++G EGKG+ P  ++T   M  + M G +++LN S AA
Sbjct: 181 DMQGTDYRR---WDAKG-AVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAA 236

Query: 270 AVALY 274
           ++ +Y
Sbjct: 237 SLLIY 241


>gi|92113015|ref|YP_572943.1| RNA methyltransferase TrmH, group 3 [Chromohalobacter salexigens
           DSM 3043]
 gi|91796105|gb|ABE58244.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Chromohalobacter
           salexigens DSM 3043]
          Length = 261

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 18/256 (7%)

Query: 33  MQSFNQKSRHTSQPENL-FLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPH 89
           M+  + ++R  + PE L  +YGVH V A      P R+++  +    A ARL+    L  
Sbjct: 1   MKGKSSRTR-VATPEGLDAVYGVHAVRALFERGQPPRELW--IQEGRAEARLEALVALAR 57

Query: 90  PFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------RNSQLLMVL 138
              VK   V  +T+D  V + AVHQG+     PL + + +A+          +  LL++L
Sbjct: 58  QAGVKCAGVARETLDG-VARGAVHQGVIAFAPPLQAESEEALWFRLGAWQQSSPPLLLIL 116

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DPHN GA LRSA A    G+I  K  +   +A + K A GA +  P  +++NL  A
Sbjct: 117 DGVTDPHNFGACLRSADAAGAHGVIVPKDKAAPLNATVRKVACGAADVTPVYQVTNLARA 176

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           + ++ + G   +G + +S + L        +A+++GAEGKG+R  T++    +A L M G
Sbjct: 177 MGRLKTHGVWIVGTAGESAQCLYDIDLAGPLAVVMGAEGKGMRRLTRDACDLLAKLPMAG 236

Query: 259 IIKALNVSNAAAVALY 274
            + +LNVS A  V L+
Sbjct: 237 SVSSLNVSVATGVCLF 252


>gi|187923698|ref|YP_001895340.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           phytofirmans PsJN]
 gi|187714892|gb|ACD16116.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           phytofirmans PsJN]
          Length = 247

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+      +     L+  LD +  S L++VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L     
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYDTEL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237


>gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus
           DSM 2379]
          Length = 251

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTID--KIVG 106
            ++GV+ V  AL    R+IF L     A   RLD    L     V+ +  +  D  ++ G
Sbjct: 5   LVFGVNPVREALRG-KREIFGLYVQSTATDHRLDKILELARERGVRVIRREREDLTRMCG 63

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+AL+ AP     LD +  +         L+VLD + DPHN+GA++R+A     
Sbjct: 64  SSH-HQGMALKVAPFSYADLDDLIEAGDREDAAGFLLVLDGIQDPHNLGALIRTAACAGA 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +  + + +    K+++GA+E I   +++N+  +L+K+   G+   GLS ++   
Sbjct: 123 SGVVIPRDRACAITPAAEKASAGAVETITVAQVTNIAQSLEKLKRSGYWVYGLSGEADAS 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L +   + KIAL++G EG+G+RP  ++   ++  + + G + +LN S A  +ALY
Sbjct: 183 LYEVAFSGKIALVIGGEGEGIRPLVRKQCDALVSIPLYGGVGSLNASVAGGIALY 237


>gi|324996031|gb|EGC27942.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK678]
          Length = 242

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  AG-AVHQGFVLRVAEFAYTDFEVLFKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 249

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V   L +  RK+++L   +N +   A+   +        ++ VP + +D++V 
Sbjct: 7   YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+  + A      LD +      RN Q   ++LD + DPHN+G+I+R+A A   
Sbjct: 66  GQ--HQGVVAQVAAYEYAELDDLYKAAEERNEQPFFLILDELEDPHNLGSIMRTADAVGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + +++ 
Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARED 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y
Sbjct: 184 YRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238


>gi|160871681|ref|ZP_02061813.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
 gi|159120480|gb|EDP45818.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
          Length = 253

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 15/245 (6%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQT 100
           +QPE  F++G HT++A L +  +KI  L   ++    R+    NL   H  P+ T+    
Sbjct: 3   NQPEKEFIFGFHTITALLKSAPQKIDTLYCREDRQDKRVQSIRNLAKLHGIPIGTLSKVQ 62

Query: 101 IDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            ++I    AVHQG+  +               L   L    N   L+VLD V DPHN+GA
Sbjct: 63  CNEI-APNAVHQGVFAKIKKTSRLNEQDLMIFLHHRLHNNLNPPFLLVLDGVQDPHNLGA 121

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
            LRSA A   D +I  +  + +++ ++ K+A+GA E      ++NL   L+++   G   
Sbjct: 122 CLRSANAAGVDAVIIPQDRAVNKTPIVQKTAAGAAEVTSLFTVTNLATCLERLKKCGIWC 181

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            GL     + +        +AL+LGAEGKGLR  T+     +  + M G + +LNVS AA
Sbjct: 182 YGLDQSGTRLIYDAPLTGPLALVLGAEGKGLRRLTKVCCDDLVAIPMVGTVGSLNVSVAA 241

Query: 270 AVALY 274
            V L+
Sbjct: 242 GVGLF 246


>gi|190573530|ref|YP_001971375.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190011452|emb|CAQ45070.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 247

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++ GV+ V++++ N +  + ++L    A    L  ++ +A       V+ V  Q +D  V
Sbjct: 7   WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENAR-RKGIDVRKVNSQALDG-V 64

Query: 106 GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G    HQG+A   A         L   + A     LL+VLD V DPHN+GA LRSA A  
Sbjct: 65  GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A + K+++GA + IP + ++NL+  L+ +   G    GL+ ++  
Sbjct: 125 ATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L Q      IAL+LG E  GLR  T+E    +  + MPG I++LNVS AA V+L+
Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLF 240


>gi|332307764|ref|YP_004435615.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 246

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 120/237 (50%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHP----FPVKTVPPQTIDK 103
           +LYG+H + A +     ++ +L   K    R D   N  + H       V+    +T+D 
Sbjct: 6   WLYGIHALEAVIEREPERLIELFVLK---GRDDKPINTIINHARKFGIAVQFCQRKTLDD 62

Query: 104 IVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            V  E  HQG+  +  P        LD +     +  L+VLD V DPHN+GA LR+A A 
Sbjct: 63  KVNGEQ-HQGVVAKAKPGKQFNENDLDDIIKKSATPFLLVLDGVTDPHNLGACLRTADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D I+  K  S + + V+ K A GA + IP I+++NL   L+++   G   +G + ++ 
Sbjct: 122 GIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEAT 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      IAL++GAEGKG+R  T+E    +  L M G + +LNVS A  V LY
Sbjct: 182 QSIYQCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGVCLY 238


>gi|71735318|ref|YP_272875.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|289624605|ref|ZP_06457559.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|71555871|gb|AAZ35082.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320321875|gb|EFW77971.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331020|gb|EFW86994.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330865903|gb|EGH00612.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330984552|gb|EGH82655.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 253

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L ++P R     LA      R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238


>gi|91783279|ref|YP_558485.1| RNA methyltransferase TrmH, group 3 [Burkholderia xenovorans LB400]
 gi|91687233|gb|ABE30433.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 247

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+      +     L+  LD +  S L++VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L     
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYDTEL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237


>gi|323495502|ref|ZP_08100576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
           DSM 21326]
 gi|323319383|gb|EGA72320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
           DSM 21326]
          Length = 245

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 120/241 (49%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L     +  +    K    R D D  +P  +   V  V  Q +    
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAFVLK---GRQD-DRLMPILNELQVCGVSIQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+     P   L    LD +     S LL+VLD V DPHN+GA LR+
Sbjct: 59  LDDKARG--ANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G +
Sbjct: 117 ADAAGVAAVIVPKDKSANITATVSKVACGAAEAVPLVRVTNLARTMRALQEQGVWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L
Sbjct: 177 GEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|296157637|ref|ZP_06840471.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           Ch1-1]
 gi|295891883|gb|EFG71667.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           Ch1-1]
          Length = 247

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 97/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+      +     L+  LD +  S L++VLD V DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L     
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLYDTEL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLF 237


>gi|302185448|ref|ZP_07262121.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
 gi|330899904|gb|EGH31323.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330978939|gb|EGH77998.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 253

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L ++P R     LA      R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238


>gi|227514006|ref|ZP_03944055.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
           ATCC 14931]
 gi|227087650|gb|EEI22962.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
           ATCC 14931]
          Length = 251

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 19/245 (7%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSR--KIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ 99
           T++  + F+ G H   AAL +     K+F     K +A+A+L   A   H   +  VP  
Sbjct: 3   TNEENSEFIIGRHPAMAALKSDQEINKVFIQKGLKTDAIAQLVKSAKERH-LVISNVPKT 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGAILR 152
            +D++   +  HQG+AL  A     T+D      A ++ +   ++LD + DPHN+G+ILR
Sbjct: 62  KLDQMTAGQN-HQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSILR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQT 209
           +A A    GII  KR S   ++V+AK+++GA+EH+P  R++NL      LQK   W F T
Sbjct: 121 TADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKSGVWLFGT 180

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               +D ++    + K   +AL++G EGKG+ P  ++T   M  + M G +++LN S AA
Sbjct: 181 DMQGTDYRR---WDAKG-AVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAA 236

Query: 270 AVALY 274
           ++ +Y
Sbjct: 237 SLLIY 241


>gi|126656120|ref|ZP_01727504.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
 gi|126622400|gb|EAZ93106.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
          Length = 291

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 129/261 (49%), Gaps = 22/261 (8%)

Query: 31  KKMQSFNQKSRHTSQPENL---FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           K + S   +S  +++P+      +YG H+V AAL    R++ ++  T     RL +D   
Sbjct: 23  KPIISSRSQSNTSAEPQETDDDLIYGRHSVLAALEG-DRQLNRIWITN----RLHYDPRF 77

Query: 88  PHPFPVKTVPPQTIDKI-------VGKEAVHQGLALETAPLLSPTLD-------AVRNSQ 133
            +           ID++       +   A HQG+A + AP     LD       A  ++ 
Sbjct: 78  HNLIQGSKAKGAVIDEVSLQRLSQITNGANHQGVAAQVAPYTYHELDELITQAKANSDAP 137

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++ D + DPHN+GAI+R+A A  C G+I  +R +   ++ ++K A+GALE  P  R+ 
Sbjct: 138 VIVIADGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVAAGALESFPVARVV 197

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL+ AL+ +   GF   G  ++  K L        I L++G+EG GL   TQ     +  
Sbjct: 198 NLSRALETLKKEGFWIYGTVAEGGKRLHDFNFEGAIGLVIGSEGSGLSLLTQRCCDQLVS 257

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G   +LN S AAA+ LY
Sbjct: 258 IPLEGKTPSLNASVAAAINLY 278


>gi|313124317|ref|YP_004034576.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280880|gb|ADQ61599.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|325685666|gb|EGD27748.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 249

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L N       K+F     +   AR  +         ++ VP  
Sbjct: 2   SSTNNDFVFGRHAGIDFLKNQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        +  L++LD++ DPHN+G+ILRS
Sbjct: 62  KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N K  L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 181 MEGDD-YRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239

Query: 274 Y 274
           Y
Sbjct: 240 Y 240


>gi|327460672|gb|EGF07007.1| RNA methyltransferase [Streptococcus sanguinis SK1]
 gi|332359937|gb|EGJ37751.1| RNA methyltransferase [Streptococcus sanguinis SK1056]
          Length = 242

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|325695531|gb|EGD37431.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 242

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|194289992|ref|YP_002005899.1| 23S rRNA (guanosine-2'-o-)-methyltransferase rlmb (23S rRNA gm2251
           2'-o-methyltransferase) [Cupriavidus taiwanensis LMG
           19424]
 gi|193223827|emb|CAQ69834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Cupriavidus taiwanensis LMG
           19424]
          Length = 247

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 116/233 (49%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            L G H V+A L    + +  + + +     R+     L     V+ + P   +++ G  
Sbjct: 6   LLIGFHAVTARLRQDPKGVSDIYIESARRDRRMQDFVRLAESLGVR-LHPVDAERLRGMA 64

Query: 109 AV--HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+      +     L   LD +  + LL+VLD V DPHN+GA LR A       
Sbjct: 65  GTDRHQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG +  ++K L 
Sbjct: 125 VIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKSLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY
Sbjct: 185 DIDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLY 237


>gi|293572686|ref|ZP_06683654.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E980]
 gi|291607272|gb|EFF36626.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E980]
          Length = 286

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 12/261 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALAR 80
           ++N    KK    NQ     ++   E+ F++G H    AL      K+F    ++     
Sbjct: 19  KQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVE 78

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133
              +       PVK VP Q ++ +     VHQG+ L   P    +LD +       +   
Sbjct: 79  ELKEIAREQAVPVKWVPKQKLETL-SNHGVHQGVVLAITPYEYLSLDQLIERTKEKKEDP 137

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K+++GA+E++P  R++
Sbjct: 138 FFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARVT 197

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  A+Q++   GF   G         +   K   IAL++G EGKG+ P  ++    +  
Sbjct: 198 NLVQAVQQLKEIGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLT 256

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN S AA + +Y
Sbjct: 257 IPMTGHVQSLNASVAAGLLMY 277


>gi|157150299|ref|YP_001449674.1| RNA methyltransferase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075093|gb|ABV09776.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 243

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 SGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ LI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTGGKLVLIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|323350497|ref|ZP_08086159.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322123179|gb|EFX94864.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 242

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 124/237 (52%), Gaps = 13/237 (5%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDK 103
           +N  +YGVH V+ AL  N   K++  +       ++D   NL       +   P +T+ +
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLY--IQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQE 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +    AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A 
Sbjct: 61  MT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  GII  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G      
Sbjct: 120 NVAGIIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQG- 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 TPSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|227552719|ref|ZP_03982768.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
           TX1330]
 gi|257897355|ref|ZP_05677008.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|293378883|ref|ZP_06625038.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           PC4.1]
 gi|227178119|gb|EEI59091.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
           TX1330]
 gi|257833920|gb|EEV60341.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|292642424|gb|EFF60579.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           PC4.1]
          Length = 286

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 12/261 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALAR 80
           ++N    KK    NQ     ++   E+ F++G H    AL      K+F    ++     
Sbjct: 19  KQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVE 78

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133
              +       PVK VP Q ++ +     VHQG+ L   P    +LD +       +   
Sbjct: 79  ELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEKKEDP 137

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K+++GA+E++P  R++
Sbjct: 138 FFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARVT 197

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  A+Q++   GF   G         +   K   IAL++G EGKG+ P  ++    +  
Sbjct: 198 NLVQAVQQLKETGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLT 256

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN S AA + +Y
Sbjct: 257 IPMTGHVQSLNASVAAGLLMY 277


>gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           bemidjiensis Bem]
 gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           bemidjiensis Bem]
          Length = 248

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 128/234 (54%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106
            +YG++ V  AL   SR+I +L +A  +A  RL+    L      PV+      ++++ G
Sbjct: 6   IIYGLNPVMEALRG-SREIHELFVAGTSADKRLEKLLKLAAERKIPVRQREKGDLNRLCG 64

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
            E  HQG+AL+  P     L   L+ ++ ++  L++VLD V DPHN+GA++RSA     +
Sbjct: 65  TEH-HQGVALKVEPFPYADLDDVLEGLQGTRDGLILVLDSVQDPHNLGALIRSAACAGAN 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  +   +AV  KS++GA E I   +++N++ AL+ +   GF   G    ++  L
Sbjct: 124 AVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSARHTL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+     +AL++G EG+G+RP  ++   ++  + + G + +LN S A  + L+
Sbjct: 184 YQQDFTGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIFLF 237


>gi|332142968|ref|YP_004428706.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|332142987|ref|YP_004428725.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552990|gb|AEA99708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327553009|gb|AEA99727.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 246

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 14/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQT---IDKIV 105
           +LYG+H + + L     ++ ++   K     RL    N    F +     Q     DK+ 
Sbjct: 6   WLYGLHAMQSVLEKEPERVMEVWVLKGRNDDRLTNIVNQARRFGISVQFSQRKALDDKVS 65

Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159
           G++  HQG+     P   L    LD +  S+   L++VLD V DPHN+GA LR+A     
Sbjct: 66  GEQ--HQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADGAGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++  K  S S +  + K A GA E +P I+I+NL   L+ +   G   +G + ++ K 
Sbjct: 124 HAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGETDKT 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQ 277
           L         AL++GAEGKG+R  T+ET   +  L M G + +L VS A  V LY  + Q
Sbjct: 184 LYDVDLKGSTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLYVSVATGVCLYEIVRQ 243

Query: 278 NHF 280
             F
Sbjct: 244 RGF 246


>gi|73541759|ref|YP_296279.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
 gi|72119172|gb|AAZ61435.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
          Length = 256

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPPQTIDKIVG 106
            L G H V+A L   ++ +  +    +   R   D   L     V+   V  + +  + G
Sbjct: 16  LLIGFHAVTARLRQDAKGVTDVYVEASRRDRRMQDFIRLAESLGVRLHPVDAERLRGMAG 75

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+      +     L   LD +  + LL+VLD V DPHN+GA LR A       
Sbjct: 76  TDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGAGAHA 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   +G +  + K L 
Sbjct: 135 VIAPKDRSVGLNTTVAKVASGAAETVPYITVTNLARTLRELQERGIWVVGTADGTDKTLY 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY
Sbjct: 195 DVDLKGPMAIVMGAEGEGMRRLTRETCDELVGIPMLGGVESLNVSVASGVCLY 247


>gi|330939882|gb|EGH43109.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 240

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L ++P R     LA      R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLGVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L ++
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLCVS 240


>gi|125718827|ref|YP_001035960.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK36]
 gi|125498744|gb|ABN45410.1| tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family, putative
           [Streptococcus sanguinis SK36]
 gi|327488747|gb|EGF20546.1| RNA methyltransferase [Streptococcus sanguinis SK1058]
          Length = 242

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 15/238 (6%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIF---QLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           +N  +YGVH V+ AL  N   K++    L   K    +   D        +   P +T+ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLCGKKVDKIK---DLAAEKKVSISWTPKKTLQ 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++    AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A
Sbjct: 60  EMT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G     
Sbjct: 119 TNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 -TPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|238855653|ref|ZP_04645953.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           269-3]
 gi|260664905|ref|ZP_05865756.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|282933602|ref|ZP_06338971.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|313472548|ref|ZP_07813038.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           1153]
 gi|238831719|gb|EEQ24056.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           269-3]
 gi|239529985|gb|EEQ68986.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           1153]
 gi|260561388|gb|EEX27361.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|281302257|gb|EFA94490.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
          Length = 251

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 50  FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           F++G H     L N S     K+F     +   A   +         V+ VP   +DK+V
Sbjct: 8   FVFGRHAGIDFLKNESADKINKVFLQNGVQTEFANQVYGLAKKKHLIVQEVPKNKLDKLV 67

Query: 106 GKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             +A HQGL L  +      LD      A + +  L++LD + DPHN+G+ILRSA A   
Sbjct: 68  -PDANHQGLVLAISSFEYADLDDLVEKIADKENPFLLMLDSIEDPHNLGSILRSADATGV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DGII  KR +   ++V+AK+++GA++H+P  R++NL    +++   G+   G + + +  
Sbjct: 127 DGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEGQDY 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + K  K  L++G EGKG+ P   +       + M G +++LN S A  V LY   N+
Sbjct: 187 RYWDTKG-KCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQMLNN 245


>gi|289648619|ref|ZP_06479962.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 252

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L ++P R     LA     AR+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDARVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L +
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q++    I  I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDLTGPTI--IMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 237


>gi|110004177|emb|CAK98515.1| putative trna/rrna methyltransferase protein [Spiroplasma citri]
          Length = 244

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 9/236 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID-KIV 105
           E +++YG++ V  +L NP+ KI +L          D+   L     +K V    ++   +
Sbjct: 3   EYIYIYGINPVVESLLNPAVKINKLYLLPQGKNN-DYYLKLAKSRQLKVVFCSAVEMTTL 61

Query: 106 GKEAVHQGLALETA-----PLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            + + HQ L LE        L S T  A++N    L+VLD ++DPHN GAILR+   F+ 
Sbjct: 62  VQTSKHQSLILEICKPQNYSLASITTKALQNKHPFLLVLDQISDPHNFGAILRTCDLFNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG+I   +     +A +AK+++GA  ++P  R++NLT+A++ +   GF     S ++K  
Sbjct: 122 DGVIILDKRQVDINATVAKTSAGAFNYVPVCRVNNLTNAIEYLKKQGFWIYATSLNTKAQ 181

Query: 220 LEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              E+K D  I LI+G EG G+  K  + A    ++   G + +LNVS A+A+ +Y
Sbjct: 182 NVSELKYDIPICLIVGNEGTGISAKLLKHADFNIYIPTAGHLDSLNVSVASAILIY 237


>gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281374|gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
           Marseille]
          Length = 247

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQT--IDKIVG 106
            ++G H V+A L + +  + ++ +       R+           V+ +P     +  IVG
Sbjct: 5   MIFGFHAVTARLRHEASSVEEIYIDAGRHDQRMKDLIRAAEGAKVRIIPADDARLSSIVG 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  +   L     L   LDA+    LL+VLD + DPHN+GA LR A       
Sbjct: 65  TRR-HQGVVAKAGELSLARNLDELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAGAHA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A  AK ASGA + +PYI ++NL   L+++       IG + DS+K L 
Sbjct: 124 VIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDIMLIGTTDDSEKGLY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +   AL++G+EG+G+R  T+ET   +  + M G +++LNVS A+ V LY
Sbjct: 184 EADFSGPAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLY 236


>gi|300811853|ref|ZP_07092319.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497172|gb|EFK32228.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 255

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L         K+F     +   AR  +         ++ VP  
Sbjct: 8   SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 67

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        +  L++LD++ DPHN+G+ILRS
Sbjct: 68  KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLGQEEAPFLLMLDNIEDPHNLGSILRS 126

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 127 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 186

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N KI L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 187 MEGDD-YRKWNANGKIVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 245

Query: 274 Y 274
           Y
Sbjct: 246 Y 246


>gi|254525374|ref|ZP_05137426.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536798|gb|EEE39251.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
           marinus str. MIT 9202]
          Length = 326

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+AL+ A   + +L+ + +       + +++ LD + DPHN+GAI+RSA AF C G
Sbjct: 149 ASHQGVALQLACSKTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKG 208

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +R S   +  +AK A+GALEH+   R+ NL  AL+ +   GF  +GLS D +  L 
Sbjct: 209 IIIPQRRSAGLTGTVAKVAAGALEHLQVSRVVNLNRALEMLKKNGFLIVGLSGDGQLSLS 268

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +   + +I+G+E KG+   TQ+    +  + + G   +LN S AAA++L+
Sbjct: 269 NFSEKVPLVVIVGSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLF 321


>gi|197294706|ref|YP_001799247.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
 gi|171854033|emb|CAM12006.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
          Length = 233

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 13/235 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---- 104
           +F+YG +T+  A+    RKI+QL    N       D +      +   P Q +DK     
Sbjct: 1   MFIYGKNTIKEAIK-AKRKIYQLYLDANF-----KDNSFISFLKLSNQPYQLVDKKKLFD 54

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + K+  HQG+  +        LD+       Q  ++LD ++DPHN+GAILR+  A   DG
Sbjct: 55  LVKQKNHQGVVAQVESYQFYDLDSFLSFEKKQRFLILDAIHDPHNLGAILRTVEACGFDG 114

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I +K++    +A ++K A GALE++    +SNL   + K+       IG  S++ + L 
Sbjct: 115 VIMSKKHQVPLNATVSKIACGALEYVKVFLVSNLHQTILKLQKQQVLIIGTDSNATQTLT 174

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   N  +A+I+G EG G+R   ++    +  + M G I +LNVS A+A+ +Y T
Sbjct: 175 KIPCNQSLAIIVGNEGDGIRYLLKQKCDLLVKIPMKGKINSLNVSVASALMMYAT 229


>gi|324989712|gb|EGC21655.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 242

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 13/237 (5%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDK 103
           +N  +YGVH V+ AL  N   K++  +       ++D   NL       +   P +T+ +
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLY--IQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQE 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +    AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A 
Sbjct: 61  MT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G      
Sbjct: 120 NVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQG- 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 TPSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|586908|sp|Q06753|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO
 gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis]
 gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 249

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V   L +  RK+++L   +N +   A+   +        ++ VP + +D++V 
Sbjct: 7   YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+  + A      LD +      +N Q   ++LD + DPHN+G+I+R+A A   
Sbjct: 66  GQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + +++ 
Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARED 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y
Sbjct: 184 FRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238


>gi|257899917|ref|ZP_05679570.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
 gi|257837829|gb|EEV62903.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
          Length = 286

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 12/261 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALAR 80
           ++N    KK    NQ     ++   E+ F++G H    AL      K+F    ++     
Sbjct: 19  KQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVE 78

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133
              +       PVK VP Q ++ +     VHQG+ L   P    +LD +       +   
Sbjct: 79  ELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLSLDQLIERTKEKKEDP 137

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K+++GA+E++P  R++
Sbjct: 138 FFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARVT 197

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  A+Q++   GF   G         +   K   IAL++G EGKG+ P  ++    +  
Sbjct: 198 NLIQAVQQLKEIGFWVFGTDMTGTNFQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLT 256

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN S AA + +Y
Sbjct: 257 IPMTGHVQSLNASVAAGLLMY 277


>gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493]
          Length = 270

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 10/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG+H VS  L+   ++I +L   +N    RL           VK +     +       
Sbjct: 27  IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 86

Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            HQG+         L+ + LLS  L       LL++LD V DPHN+GA LRSA AF    
Sbjct: 87  KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 145

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  ++
Sbjct: 146 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 205

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q  
Sbjct: 206 EIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 263


>gi|319939872|ref|ZP_08014227.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
 gi|319810883|gb|EFW07202.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
          Length = 242

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 123/238 (51%), Gaps = 17/238 (7%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNALARLDWDAN--LPHPFPVKTVPPQTID 102
           N  +YGVH V+ AL  N   K++    L  KN     D  A   +   +  K +  +  D
Sbjct: 4   NDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTTKKILQEMTD 63

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                 AVHQG  L  +       +A+       ++ LL++LD + DPHN+G+ILR+A A
Sbjct: 64  G-----AVHQGFVLRVSEFAYTDFEAMLKMATQEDNPLLLILDGLTDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G   + 
Sbjct: 119 TNVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKHAGFWIFGTDMNG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 179 -TPSTKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMY 235


>gi|52783308|sp|Q83CW6|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
          Length = 250

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 10/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG+H VS  L+   ++I +L   +N    RL           VK +     +       
Sbjct: 7   IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 66

Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            HQG+         L+ + LLS  L       LL++LD V DPHN+GA LRSA AF    
Sbjct: 67  KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  ++
Sbjct: 126 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q  
Sbjct: 186 EIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 243


>gi|331701828|ref|YP_004398787.1| TrmH family RNA methyltransferase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129171|gb|AEB73724.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus buchneri
           NRRL B-30929]
          Length = 266

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 130/258 (50%), Gaps = 19/258 (7%)

Query: 33  MQSFNQKSRHTS-----QPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDA 85
           M++ N+   H S     QPE  F+ G H V AAL   NP  K+F     K+    +    
Sbjct: 1   MKNDNRSQDHRSDDSQDQPEE-FVIGRHPVVAALKSENPVNKLFIQSGIKDDDNIISEIM 59

Query: 86  NLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLM 136
            L H     +  VP Q +DK+   +  HQG+ L  A     T+D +  +          +
Sbjct: 60  KLAHKKRLVISKVPKQKLDKLSNNQN-HQGVVLSIAAFKYATIDDLFTNAKKQAVEPFFV 118

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD++ DPHN+G+I+R+A A    GII  K  +   +A ++K+++GA+E +P  R++NL+
Sbjct: 119 ILDNIEDPHNLGSIIRTADAAGVSGIIIPKHRAVGLTATVSKTSAGAIERVPVARVTNLS 178

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             ++++   G    G           + K   IA+I+G EGKG+ P  ++    M  + M
Sbjct: 179 ATIKELKQRGMWVFGTDVSGTDYRRWDAKG-SIAVIIGNEGKGISPLLKKQVDEMLTIPM 237

Query: 257 PGIIKALNVSNAAAVALY 274
            G I++LN S AA++ +Y
Sbjct: 238 VGDIQSLNASVAASILIY 255


>gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
 gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
          Length = 548

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQG+AL+TA       P L     A+    LL+ LD + DPHN+GAI+RSA A    G
Sbjct: 292 AVHQGIALQTASADTLDLPTLVEGCAALGEPPLLLALDGLTDPHNLGAIVRSAEALGAHG 351

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ +GL+ +    L 
Sbjct: 352 VVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAGEGDVTLA 411

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      +A++ G+EG+GL   T+     +  + + G+  +LN S A A+ LY
Sbjct: 412 EADLEGPLAIVTGSEGQGLSLLTRRHCDQLIRIPLRGVTPSLNASVATAMCLY 464


>gi|53803949|ref|YP_114407.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757710|gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus
           capsulatus str. Bath]
          Length = 250

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 120/235 (51%), Gaps = 13/235 (5%)

Query: 51  LYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP--QTIDKIVGK 107
           ++G+H   AAL+ +P + +   L       RL   A       V+ V    + +D++   
Sbjct: 7   VWGIHAAEAALDYSPDKIVKAWLDDHRMQNRLQAVATRLDELGVEIVRADRKRLDRLADP 66

Query: 108 EAVHQGLALE--------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              HQG+ LE         A LL  TLDA     L +VLDHV DPHN+GA LR+  A   
Sbjct: 67  RK-HQGILLELDLPGEQGEAELLD-TLDAADGHPLYLVLDHVQDPHNLGACLRTCDAAGV 124

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++ TK  S   +  +AK ASGA E +P  R++NL   L +    G+  +G + ++++ 
Sbjct: 125 KGLVVTKDQSVGLTPTVAKVASGAAETVPVYRVTNLARCLDRFKQRGYWVVGAAGEAERT 184

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L +      + +++GAEG GLR  T+E    +  + M G +++LN+S A  + LY
Sbjct: 185 LYELDLRLPLVVVMGAEGVGLRRLTRERCDFLLRIPMVGGVESLNLSVATGIVLY 239


>gi|325845921|ref|ZP_08169119.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481827|gb|EGC84859.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 2/172 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG+ +E        LD +++ + LM+LD + DPHN+GAI+RSA AF  DGI+ ++R S 
Sbjct: 65  HQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISERRSA 124

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             ++ + K+++GA+ +I    + N+  A++++    F   GL+ ++   + Q     KIA
Sbjct: 125 KVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLTGKIA 184

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280
           L++G EGKGL    +E    +  + M G I +LN S A+A+A+Y  + QN F
Sbjct: 185 LVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQNGF 236


>gi|257888687|ref|ZP_05668340.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257824741|gb|EEV51673.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
          Length = 286

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 118/236 (50%), Gaps = 10/236 (4%)

Query: 47  ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           E+ F++G H    AL      K+F    ++        +       PVK VP Q ++ + 
Sbjct: 44  EDNFVFGHHAAVEALQQGRGNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL- 102

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               VHQG+ L   P    +LD +       + +   ++LD + DPHN G+ILR+A A  
Sbjct: 103 SDHGVHQGVVLAITPYEYLSLDQLIERTKEKKEAPFFLILDSIEDPHNFGSILRTADASG 162

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DG+I  K  +   + ++ K+++GA+E++P  R++NL  A+Q++   GF   G       
Sbjct: 163 VDGVIIPKHRAVGITPIVTKTSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMIGTN 222

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   K   IAL++G EGKG+ P  ++    +  + M G +++LN S AA + +Y
Sbjct: 223 FQKWNAKGS-IALVIGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMY 277


>gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           331]
          Length = 270

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 10/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YG+H VS  L+   ++I +L   +N    RL           VK +     +       
Sbjct: 27  IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86

Query: 110 VHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            HQG+         L+ + LLS  L       LL++LD V DPHN+GA LRSA AF    
Sbjct: 87  KHQGIVADCEEVENLDESALLS-LLKKRETPALLLILDGVKDPHNLGACLRSANAFGVRA 145

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  ++
Sbjct: 146 VIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLIQ 205

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q  
Sbjct: 206 EIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQ 263


>gi|261250419|ref|ZP_05942994.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           orientalis CIP 102891]
 gi|260938988|gb|EEX94975.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           orientalis CIP 102891]
          Length = 245

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L     +  +    K    R D D  +P  +   V  V  Q +    
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAFVLK---GRQD-DRLMPILNELQVCGVSIQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+     P   L    LD +     + LL+VLD V DPHN+GA LR+
Sbjct: 59  LDDKARG--ANHQGIMARVKPAKQLNENDLDDILAKHEAPLLLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G +
Sbjct: 117 ADAAGVAAVIVPKDKSANITATVSKVACGAAESVPLVRVTNLARTMRTLQEQGIWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L
Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|219872021|ref|YP_002476396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219692225|gb|ACL33448.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 244

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 26/241 (10%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V + L+    ++ ++   K           N L RL           V+ V  Q
Sbjct: 5   IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLG--------IRVQQVNRQ 56

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153
            +D  V  E VHQG+  +  P   L    LD + + +    L++LD V DPHN+GA LR+
Sbjct: 57  ALDNKVQGE-VHQGIIAKIIPAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   D +I  K  S   ++   K A GA E +P IR++NL   ++++       +G +
Sbjct: 116 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTA 175

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ + L Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L
Sbjct: 176 GEATESLYQVKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCL 235

Query: 274 Y 274
           +
Sbjct: 236 F 236


>gi|78222568|ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
 gi|78193823|gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
          Length = 250

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTID 102
            LYG+++   AL    R+ F+L  +++A       L +L  +  +P    V+    + I 
Sbjct: 5   ILYGINSAMEALRG-KRRAFELFVSRDASDRRMEKLLKLATEKGVP----VRNRDKRDIS 59

Query: 103 KIVGKEAVHQGLAL--ETAPL--LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAV 155
           ++ G +  HQG+AL  E  P   LS  +DA R S    L++ LD V DPHN+GA++RSA 
Sbjct: 60  RLCGTDH-HQGVALKLEGFPYTGLSDIIDAWRESGERGLILALDGVQDPHNLGALIRSAA 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  K  +   +A + KSA+GA E IP  +++NL  AL ++   GF   G +  
Sbjct: 119 CAGAHGVIIPKDRAARVTATVEKSAAGAAETIPVAQVTNLAQALDELKEAGFWIYGAADS 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L  +  +  + +++G+EG+G+RP  ++    +  + + G + +LN S A  V L+
Sbjct: 179 AASSLYDQDLSGNVVIVIGSEGEGVRPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILF 237


>gi|261345208|ref|ZP_05972852.1| RNA methyltransferase, TrmH family, group 3 [Providencia
           rustigianii DSM 4541]
 gi|282566901|gb|EFB72436.1| RNA methyltransferase, TrmH family, group 3 [Providencia
           rustigianii DSM 4541]
          Length = 245

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105
            +YG+H V A L N  ++I ++   K    R      + H    + +  Q  ++      
Sbjct: 4   IIYGIHAVKALLENSPQRIKEVYILKGREDRRLMP--IVHEIEAQGIVVQVANRQWMDAQ 61

Query: 106 GKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + AVHQG+     P         P L     S  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  TEGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A + K A GA E+IP IR++NL   L+ +  +    +G + ++   
Sbjct: 122 HAVIVPKDKSAQLNATVKKVACGAAENIPLIRVTNLARTLRLLQEYNVWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q   +  IAL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 182 LYQSKLSGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC
           7002]
          Length = 388

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            VHQG+A++TAP        L     A   S ++++ D + DPHN+GAI+R+A A    G
Sbjct: 197 GVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPHNLGAIIRTAEAIGAQG 256

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R +   ++ + K A+GALEH P  R+ NL+ A++++   GF   G ++ + K L 
Sbjct: 257 MIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYGTAAGTSKALH 316

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  I L++G+EG+GL   TQ+    +  + M G   +LN S AAA+ALY
Sbjct: 317 NIKFEGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAIALY 369


>gi|251793952|ref|YP_003008684.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535351|gb|ACS98597.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 245

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 128/245 (52%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A + +   ++ ++LA K           N + RL           V+ +  Q
Sbjct: 5   IYGIHAVKAFVTHYPERLIEVLALKGRDDQRLQLLINEIQRLG--------ISVQFLNRQ 56

Query: 100 TIDKIVGKEAVHQGLA--LETAPLLSP-TLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153
           T+DK    E VHQG+   + + P L+   LD +   Q   LL+VLD V DPHN+GA LR+
Sbjct: 57  TLDKKAEGE-VHQGIIARVHSLPELNEHDLDLLLEQQKAPLLLVLDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   + +I TK  S   ++   K A GA E++P IR++NL      LQK H+ W    
Sbjct: 116 ADAAGVNAVIVTKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVW---V 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++ + L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGETTETLYQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVAT 232

Query: 270 AVALY 274
            V L+
Sbjct: 233 GVCLF 237


>gi|325686893|gb|EGD28918.1| RNA methyltransferase [Streptococcus sanguinis SK72]
          Length = 242

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V  AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVKEALAANTGNKLYIQDDLRGKKVEKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++N++  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNISQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|328944843|gb|EGG39003.1| RNA methyltransferase [Streptococcus sanguinis SK1087]
          Length = 242

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLGKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALVIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|292493502|ref|YP_003528941.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
           halophilus Nc4]
 gi|291582097|gb|ADE16554.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
           halophilus Nc4]
          Length = 249

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 113/238 (47%), Gaps = 11/238 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGKE 108
           YG+H V AAL  P+ +I  L   ++   R   +     L        V  + +D +V   
Sbjct: 7   YGLHAVRAALEQPATQIISLWLDQSRKDRAIQEITELALEQGLDFYPVNREDLDSLV-PG 65

Query: 109 AVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+          T   L   LD ++   LL++LD V DPHN+GA LR+A A    G
Sbjct: 66  VRHQGVVAHCSAQPTFTEEGLFDLLDNLKAPPLLLILDGVQDPHNLGACLRTAEAAGVHG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A + K ASGA E +P++R++NL   ++K+   G   +G        L 
Sbjct: 126 VIAPKDRAVGLTAAVRKVASGAAERVPFVRVTNLARLMRKLRERGLWLVGTVVKGGGSLY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + L+LGAE +GLR  T E    +  + M G + +LNVS AA V L+  Q  
Sbjct: 186 NTDLKGPLGLVLGAEDRGLRRLTAEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQ 243


>gi|323492117|ref|ZP_08097279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
           LMG 20546]
 gi|323313678|gb|EGA66780.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
           LMG 20546]
          Length = 245

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 120/239 (50%), Gaps = 16/239 (6%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIV 105
           N ++YG+H V A L+    +  +    K    R D D  LP  +   V  V  Q + +  
Sbjct: 3   NEYIYGIHAVKAVLSREPERFIEAFVLK---GRQD-DRLLPILNELNVCGVSIQQMTRKT 58

Query: 106 GKE----AVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             E    A HQG+     P   L    LD   A   S LL+VLD V DPHN+GA LR+A 
Sbjct: 59  LDEKASGANHQGIMARVKPAKQLNEHDLDDIIAQHESPLLLVLDGVTDPHNLGACLRNAD 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + +
Sbjct: 119 AAGVAAVIVPKDRSANITATVSKVACGAAEMVPLVRVTNLARTMRTLQEQGIWFVGTAGE 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+
Sbjct: 179 ATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGICLF 237


>gi|104774468|ref|YP_619448.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423549|emb|CAI98467.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 255

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L         K+F     +   AR  +         ++ VP  
Sbjct: 8   SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 67

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        + LL++LD++ DPHN+G+ILRS
Sbjct: 68  KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRS 126

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 127 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 186

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N K  L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 187 MEGDD-YRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 245

Query: 274 Y 274
           Y
Sbjct: 246 Y 246


>gi|253996415|ref|YP_003048479.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253983094|gb|ACT47952.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera mobilis
           JLW8]
          Length = 250

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 10/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L+G H V + L   S  + ++L  ++ + AR+    N+     V+T  V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHSASVQEILIDRDRVDARMKDLLNMAESSGVRTMQVERSRLDGMAG 65

Query: 107 KEAVHQGLALETA--PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+       P+    +  +  S L      ++LD V DPHN+GA LR A A   
Sbjct: 66  MNGRHQGVIARVVDTPIPYKDIHDILESDLSEPAFFLILDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E +P+I ++NL   ++++   G   +G + DS   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVVGTTMDSPST 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     N  IAL+LGAEG G+R  T ET  ++  + M G +++LNVS A+ + LY
Sbjct: 186 LLNTKLNGPIALVLGAEGDGMRRLTAETCDALMTIPMFGSVQSLNVSVASGICLY 240


>gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 249

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V   L +  RK+++L   +N +   A+   +        ++ VP + +D++V 
Sbjct: 7   YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+  + A      LD +      +N Q   ++LD + DPHN+G+I+R+A A   
Sbjct: 66  GQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + +++ 
Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARED 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y
Sbjct: 184 YRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238


>gi|325126286|gb|ADY85616.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 249

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L         K+F     +   AR  +         ++ VP  
Sbjct: 2   SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        + LL++LD++ DPHN+G+ILRS
Sbjct: 62  KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N K  L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 181 MEGDD-YRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239

Query: 274 Y 274
           Y
Sbjct: 240 Y 240


>gi|229824606|ref|ZP_04450675.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
 gi|229785977|gb|EEP22091.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
          Length = 281

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 140/279 (50%), Gaps = 31/279 (11%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQ----------PENLFLYGVHTVSAAL--NNPSRKIF--Q 70
           R+ +   K Q+  +K   T+           P+   ++G H V   L  N    K+F  +
Sbjct: 7   RSRKSTSKRQTHKKKYDETTDKKIENIPDASPQEEIIFGKHAVMETLKKNKGINKLFYQK 66

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD--- 127
            LA     + ++   N  H    + VP   +D++  + A HQGL L   P    T++   
Sbjct: 67  GLADSKISSIIELVKN--HGGIFQEVPKSKLDELT-QGANHQGLVLTVPPFDYQTIEGCL 123

Query: 128 AVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           A+  S+     L++LD + DPHN+G+ILR+A AF   GII  KR +   + ++AK+++GA
Sbjct: 124 ALAESKGQPPFLLILDGIEDPHNLGSILRTADAFGVHGIIIPKRRAVGLTGIVAKTSTGA 183

Query: 184 LEHIPYIRISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +EH+P +R++N+    + LQ    W F T     D ++   Q      +A+++G EG+G+
Sbjct: 184 IEHVPVVRVANIAQTIELLQNQGIWVFATDMAGEDVRQWNSQ----GPLAIVIGNEGQGV 239

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            P  ++ A  +  + M G +++LN S AA V +Y    H
Sbjct: 240 SPLVKQKADGIVTIPMVGHVQSLNASVAAGVLVYEVARH 278


>gi|308048246|ref|YP_003911812.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630436|gb|ADN74738.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 245

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 14/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++G+H V A +     ++ +L   K     RL   A L   F V+  P     K++  +
Sbjct: 5   MVFGLHAVEALMQRQPERVMELWVMKGRDDERLTRIAELAQQFGVR--PQLAARKVLDDK 62

Query: 109 AV---HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           A    HQG+     P        L   LD V ++  L+VLD V DPHN+GA LRSA A  
Sbjct: 63  AESTQHQGVVARCKPEPVKGEHELDQLLDGV-DTPFLLVLDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  S S   ++ K A GA E IP  +++NL   L+ +   G   +G + ++  
Sbjct: 122 VHGVIVPKDRSASLGPIVRKVAVGAAESIPLFQVTNLARTLRSLQERGIWIVGAAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + Q      +A+ +GAEGKGLR  T+E    +  + M G + +LNVS A  + L+
Sbjct: 182 TVYQSKLTGPLAIAMGAEGKGLRRLTREHCDDLISIPMAGAVSSLNVSVATGICLF 237


>gi|257462508|ref|ZP_05626920.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060164|ref|ZP_07924649.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313685840|gb|EFS22675.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 238

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 90/146 (61%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R+  +L++LD + DP N GA++RSA  F  DGI+  +R S   +  + K+++GA+E++
Sbjct: 83  AGRSQSILLMLDEIQDPRNFGALIRSAEVFGVDGILIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P I+++NL++A++K+    +   G + +++   ++E    K+ LILG EG GLR K +E 
Sbjct: 143 PIIKVTNLSNAIEKLKKIDYWVYGAAGEAELSCQEEQYPKKVVLILGNEGTGLRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A  + L
Sbjct: 203 CDKLIKIQMRGKINSLNVSVAGGILL 228


>gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
 gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
          Length = 249

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V   L +  RK+++L   +N +   A+   +        ++ VP + +D++V 
Sbjct: 7   YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+  + A      LD +      +N Q   ++LD + DPHN+G+I+R+A A   
Sbjct: 66  GQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + +++ 
Sbjct: 124 HGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASARED 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y
Sbjct: 184 YRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238


>gi|330960080|gb|EGH60340.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 250

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 38/247 (15%)

Query: 51  LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +YGVH V A L                N+P  +    LA++N +              + 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVT-------------IG 53

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               + +D  V  E VHQG+  + +P       +L   LD      LL+VLD V DPHN+
Sbjct: 54  QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLEELLDRSEGPPLLLVLDGVTDPHNL 111

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA LR+A A     +I  K  S + +  + K A GA E IP + ++NL   L+K+   G 
Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G + +++  L Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS 
Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSV 231

Query: 268 AAAVALY 274
           A  V L+
Sbjct: 232 ATGVCLF 238


>gi|154684614|ref|YP_001419775.1| YacO [Bacillus amyloliquefaciens FZB42]
 gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42]
          Length = 249

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V   L +  RK+++L   +N +   A+   +        ++ VP + +D++V 
Sbjct: 7   YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVMELAKKRGVTIQFVPRKKLDQMV- 64

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+  + A      LD +      RN Q   ++LD + DPHN+G+I+R+A A   
Sbjct: 65  -EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTADAVGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI+  KR +   ++ +AK+++GA+EHIP ++++NL   L +M   G   +G  + +++ 
Sbjct: 124 HGIMIPKRRAVGLTSTVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDASARED 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    +AL++G+EG+G+    +E    +  L M G + +LN S AA + +Y
Sbjct: 184 YRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMY 238


>gi|259907185|ref|YP_002647541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|224962807|emb|CAX54265.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|283476994|emb|CAY72886.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
 gi|310765324|gb|ADP10274.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia sp. Ejp617]
          Length = 245

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H V A L+ +P R  ++F L   ++   +    A       ++    Q +D    
Sbjct: 4   IVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN-TS 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG+     P         P L A  ++  L++LD V DPHN+GA +RSA A    
Sbjct: 63  EGAVHQGIIARVKPGRQYQEGDLPDLLASLDNPFLLILDGVTDPHNLGACMRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  K  S + +A   K ASGA EHIP +R++NL   ++ +       +G + ++   L
Sbjct: 123 AIIVPKDRSAALNATAKKVASGAAEHIPLVRVTNLARTMRVLQEANVWIVGTAGEADHTL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 183 YQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|28872048|ref|NP_794667.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|52783312|sp|Q87VK2|RLMB_PSESM RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28855301|gb|AAO58362.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331014619|gb|EGH94675.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 250

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 38/247 (15%)

Query: 51  LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +YGVH V A L                N+P  +    LA++N +              + 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVT-------------IG 53

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               + +D  V  E VHQG+  + +P       +L   LD      LL+VLD V DPHN+
Sbjct: 54  QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNL 111

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA LR+A A     +I  K  S + +  + K A GA E IP + ++NL   L+K+   G 
Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G + +++  L Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS 
Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSV 231

Query: 268 AAAVALY 274
           A  V L+
Sbjct: 232 ATGVCLF 238


>gi|213967932|ref|ZP_03396078.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato T1]
 gi|301383751|ref|ZP_07232169.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
 gi|302059274|ref|ZP_07250815.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
 gi|302132342|ref|ZP_07258332.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927275|gb|EEB60824.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato T1]
          Length = 253

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 38/247 (15%)

Query: 51  LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +YGVH V A L                N+P  +    LA++N +              + 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVT-------------IG 53

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               + +D  V  E VHQG+  + +P       +L   LD      LL+VLD V DPHN+
Sbjct: 54  QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNL 111

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA LR+A A     +I  K  S + +  + K A GA E IP + ++NL   L+K+   G 
Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G + +++  L Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS 
Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSV 231

Query: 268 AAAVALY 274
           A  V L+
Sbjct: 232 ATGVCLF 238


>gi|315634962|ref|ZP_07890243.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
           segnis ATCC 33393]
 gi|315476224|gb|EFU66975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
           segnis ATCC 33393]
          Length = 245

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 37/247 (14%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A ++N   ++ ++LA K           N + RL           V+ +  Q
Sbjct: 5   IYGIHAVKAFVSNHPERLIEVLALKGRDDQRLQPLINEIQRLG--------ISVQFLNRQ 56

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAIL 151
           T+DK    E VHQG+      L  P L+          RN  LL+VLD V DPHN+GA L
Sbjct: 57  TLDKKAEGE-VHQGIIARVHSL--PELNEHDLDRLLETRNVPLLLVLDGVTDPHNLGACL 113

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGF 207
           R+A A     +I  K  S   ++   K A GA E++P IR++NL   L+ +      W  
Sbjct: 114 RTADAAGVSAVIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRDLQERHNVW-- 171

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G + ++ + L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS 
Sbjct: 172 -VVGTAGEATETLYQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSV 230

Query: 268 AAAVALY 274
           A  V L+
Sbjct: 231 ATGVCLF 237


>gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 256

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 107/189 (56%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPH 145
           V+  P   +D++ G +  HQG+    A      L D +  +Q      LL+VLD V DPH
Sbjct: 50  VRAAPRAKLDRLAGTDR-HQGVVAVVADFRYAELEDLLARAQASGRPPLLVVLDGVEDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RSA A    G++  +  +   +  +AK+++GA+E  P  R++N+   L+++   
Sbjct: 109 NLGAIIRSAHALGAHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEA 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G  ++  ++D ++ L +       AL+LG+EG+GLRP  + T    A + M G + +L+V
Sbjct: 169 GIWSVAFAADGERALGEVDLKGPTALVLGSEGEGLRPLVRRTCDLSARIPMSGDLDSLSV 228

Query: 266 SNAAAVALY 274
           S +AAVALY
Sbjct: 229 SASAAVALY 237


>gi|330873777|gb|EGH07926.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965990|gb|EGH66250.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 253

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 116/247 (46%), Gaps = 38/247 (15%)

Query: 51  LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +YGVH V A L                N+P  +    LA++N +              + 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVT-------------IG 53

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               + +D  V  E VHQG+  + +P       +L   LD      LL+VLD V DPHN+
Sbjct: 54  QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNL 111

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA LR+A A     +I  K  S + +  + K A GA E IP + ++NL   L+K+   G 
Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G + +++  L Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS 
Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSV 231

Query: 268 AAAVALY 274
           A  V L+
Sbjct: 232 ATGVCLF 238


>gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708]
          Length = 323

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 145/299 (48%), Gaps = 31/299 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-----------PENL 49
           +N+  + K  +   +K          H+   + +SF+ K R + Q            E+ 
Sbjct: 8   INITGETKRVQPIKIKGKRVIANPTRHQTKGESKSFSSKPRPSHQSSLPTPAIKSPEESD 67

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTI 101
            +YG H V +AL N  R + +L  T    ARL +D    H           +  V P+ +
Sbjct: 68  LIYGRHPVLSALEN-QRGLNRLWIT----ARLRYDPRFHHLILQAKDNGTVIDEVEPKRL 122

Query: 102 DKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHNIGAILRSAV 155
           D+I    A HQG+A + AP     L D +  ++     +++V D + DPHN+GAI+R+A 
Sbjct: 123 DQIT-DGANHQGIAAQIAPYAYMELEDLITQAKSVTDPVIVVADGITDPHNLGAIIRTAE 181

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++  +R +   ++ + K A+GALE+ P  R+ NL+ AL+++   G+   G ++ 
Sbjct: 182 AIGSQGLVIPQRRASGITSTVVKVAAGALENFPVARVINLSRALEQLKEAGYWIYGTAAA 241

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +P+     +    L++G+EG GL   TQ +   +  + + G   +LN S AA +ALY
Sbjct: 242 GSEPIHTVKFSGSTVLVIGSEGDGLSMLTQRSCDILVSIPLQGKTPSLNASVAAGMALY 300


>gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311]
 gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           CC9311]
          Length = 589

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 101/173 (58%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQG+ L+TA   +  L+       A+  + LL+ LD + DPHN+GAI+RSA A    G
Sbjct: 313 AVHQGIVLQTAAAETFDLEDLVKGCSALDEAPLLLALDGLTDPHNLGAIVRSAEALGAHG 372

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ + S G++ IGL+ +    LE
Sbjct: 373 VVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKSSGYRVIGLAEEGDLTLE 432

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +  + ++ G+EG+GL   T+     +  + + G+  +LN S A A+ LY
Sbjct: 433 EVDLDGPLVIVTGSEGQGLSMLTRRHCDQLIRIPLRGVTPSLNASVATALCLY 485


>gi|256852091|ref|ZP_05557478.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661339|ref|ZP_05862252.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|282934883|ref|ZP_06340115.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|297205034|ref|ZP_06922430.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256615503|gb|EEU20693.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260547794|gb|EEX23771.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|281301064|gb|EFA93376.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|297149612|gb|EFH29909.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 251

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           F++G H     L N S     K+F     +   A   +         V+ VP   +DK+V
Sbjct: 8   FVFGRHAGIDFLKNESADKINKVFLQNGVQVEFANQVYGLAKKKHLIVQEVPKNKLDKLV 67

Query: 106 GKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             +A HQGL L  +      LD      A + +  L++LD + DPHN+G+ILRSA A   
Sbjct: 68  -PDANHQGLVLAISSFEYADLDKLVKKIADKENPFLLMLDSIEDPHNLGSILRSADATGV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DGII  KR +   ++V+AK+++GA++H+P  R++NL    +++   G+   G + + +  
Sbjct: 127 DGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEGQDY 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + K  K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 187 RYWDAKG-KCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 240


>gi|253699965|ref|YP_003021154.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
 gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
          Length = 249

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106
            +YG++ V  AL   SR+I +L +A  ++  RL+    L      PV+      ++++ G
Sbjct: 6   IIYGLNPVMEALRG-SREIHELFVAGTSSDKRLEKLLKLAADRKIPVRQREKGDLNRLCG 64

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            E  HQG+AL+  P     LD V          L++VLD V DPHN+GA++RSA      
Sbjct: 65  TEH-HQGVALKVEPFPYADLDDVLAELKGNQEGLVLVLDSVQDPHNLGALIRSAACAGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  +   +AV  KS++GA E I   +++N++ AL+ +   GF   G    ++  L
Sbjct: 124 AVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSARSTL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+  +  +AL++G EG+G+RP  ++   ++  + + G + +LN S A  + L+
Sbjct: 184 YQQDFSGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIMLF 237


>gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
           7061]
 gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
           7061]
          Length = 249

 Score =  112 bits (279), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 107/189 (56%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145
           ++ VP + +D++V  +  HQG+  + A      LD +      RN Q   ++LD + DPH
Sbjct: 52  IQYVPRKKLDQMVTGQ--HQGIVAQVAAYEYAELDDLYQIAEQRNEQPFFLILDEIEDPH 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GI+  KR +   +  +AK+++GA+EHIP  +++NL+ AL +M   
Sbjct: 110 NLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVAKVTNLSRALDEMKER 169

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  + +K+   Q      +AL++G+EGKG+    +E    +  L M G + +LN 
Sbjct: 170 GIWVAGTDASAKQDYRQFDGTMPLALVIGSEGKGIGRLIKEKCDFLIKLPMAGKVTSLNA 229

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 230 SVAASLLMY 238


>gi|56461042|ref|YP_156323.1| rRNA methylase [Idiomarina loihiensis L2TR]
 gi|56180052|gb|AAV82774.1| RRNA methylase, SpoU family [Idiomarina loihiensis L2TR]
          Length = 248

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 125/238 (52%), Gaps = 11/238 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPPQTIDK 103
           + + ++G+H V A L N   ++ +L  +K        D  N  H   V+   VP Q ++K
Sbjct: 3   QKVTVFGLHAVRAILKNHPDRLVELYVSKERQDDSVRDIVNQCHATGVRPQWVPKQALEK 62

Query: 104 IVGKEAVHQGLA--LETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              +   HQG+   +++ P L+       L+  + + L ++LD V DPHN+GA LR+A A
Sbjct: 63  -RAEGGNHQGVVATVQSPPTLTEHDLPKLLEQSQQAGLFLILDGVTDPHNLGACLRTADA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  K  S   +  + K ASGA E++P + ++NL  AL+ +   G    G + ++
Sbjct: 122 AGVTGVIVPKDKSAQITPTVRKVASGAAENVPLVVVTNLARALRDLQELGVWAYGTAGEA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +        +AL++GAEGKG+R  T+ET   +  + + G + +LNVS A+ V L+
Sbjct: 182 TQSVYDVDYRGPVALVMGAEGKGMRRLTRETCDDLVSIPLSGSVSSLNVSVASGVCLF 239


>gi|222055495|ref|YP_002537857.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
 gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
          Length = 245

 Score =  112 bits (279), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 122/233 (52%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
            +YG+++V  AL    R     +A+ ++  RL+   +L      PV+    + I ++ G 
Sbjct: 5   IIYGLNSVMEALRGKRRAFELFVASGSSDRRLEKLLDLAEEKRVPVRHRDKRDISRLCGT 64

Query: 108 EAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +  HQG+AL T       L      +  R++ LL+VLD V DPHN+GA++RSA      G
Sbjct: 65  DH-HQGIALRTERFAYAQLADILESETARSNGLLLVLDGVQDPHNLGALIRSAACAGAQG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A + K+++GA+E I    ++N+   L ++ + GF   G   +S   + 
Sbjct: 124 VIIPKDRAVGVTAAVEKASAGAIETIAVAEVTNIAQTLDELKAAGFWIYGADGESPISIF 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++     +AL++G+EG+G+RP  ++    +  + + G + +LN S A  + L+
Sbjct: 184 EQKLTGAVALVIGSEGEGIRPLVKKRCDILVSIPLKGGVNSLNASVAGGIMLF 236


>gi|157413277|ref|YP_001484143.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387852|gb|ABV50557.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9215]
          Length = 326

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 101/173 (58%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+AL+ A   + +L+ + +       + +++ LD + DPHN+GAI+RSA AF C G
Sbjct: 149 ASHQGVALQLACSKTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKG 208

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +R S   +  +AK A+GALEH+   R+ NL  AL+ +   GF  +GLS D +  L 
Sbjct: 209 IIIPQRRSAGLTGTVAKVAAGALEHLQVSRVVNLNRALEVLKKNGFLIVGLSGDGQLSLS 268

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +   + +I+G+E KG+   TQ+    +  + + G   +LN S AAA++L+
Sbjct: 269 NFSEIVPLVVIVGSEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLF 321


>gi|260779505|ref|ZP_05888395.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604314|gb|EEX30618.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 245

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 18/240 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQT 100
           N F+YG+H V A L     +  +    K    R D D  +P           ++ +  +T
Sbjct: 3   NEFIYGIHAVKAVLAKEPERFVEAFVLKG---RQD-DRLMPILNELQMCGVSIQQMTRKT 58

Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           +D    + A HQG+  +  P   L    LD   A  ++ LL+VLD V DPHN+GA LR+A
Sbjct: 59  LDD-KARGANHQGIMAKVKPAKQLNENDLDDILAQHSAPLLLVLDGVTDPHNLGACLRNA 117

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + 
Sbjct: 118 DAAGVAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAG 177

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+
Sbjct: 178 EATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLF 237


>gi|224475680|ref|YP_002633286.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420287|emb|CAL27101.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 249

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 128/242 (52%), Gaps = 21/242 (8%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP----FPVKTVPPQT 100
           E+  + G H V  A+   +P  KI      ++ + +   +  L H       V+TVP   
Sbjct: 4   EDSVIVGRHAVKEAITTGHPINKIL----IQDGVKKQQLEEILKHAKNQKIVVQTVPKSK 59

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--------LMVLDHVNDPHNIGAILR 152
           +D +   EA HQG+A   AP     LD +  +QL        L++LD + DPHN+G+ILR
Sbjct: 60  LDHLA--EAPHQGVAALVAPYEYADLDKLL-AQLKDKDGLPTLVILDGLEDPHNLGSILR 116

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A   DG+I  KR S + +  +AK+++GA++H+P +R++NL+  + ++   G+   G 
Sbjct: 117 TADAAGVDGVIIPKRRSVALTQTVAKASAGAIQHVPVVRVTNLSQTMDQLKDEGYWIAGT 176

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           ++D+     Q   +  +A+++G EG G+    +E       + M G I +LN S AA++ 
Sbjct: 177 AADNATDYRQMAADMPLAIVIGNEGHGMSRLVKEKCDFYIKIPMVGHINSLNASVAASLM 236

Query: 273 LY 274
           +Y
Sbjct: 237 MY 238


>gi|224283924|ref|ZP_03647246.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
           PRL2010]
 gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
           PRL2010]
 gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 332

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 88/142 (61%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  HIP  R+ 
Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHIPVARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ M   G+ T+GL     K + E   + D + ++LG+EGKGL    +E+  ++A
Sbjct: 236 NLTKAIESMRERGYYTVGLDGGGDKLVGETGFETDPLIVVLGSEGKGLSRLVRESCDAIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + +  ++++LN S AA ++LY
Sbjct: 296 GIPITSMVESLNASVAAGISLY 317


>gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9211]
          Length = 413

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 11/175 (6%)

Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            VHQG+AL+TA   S TLD          +  S +L+ LD + DPHN+GAI+RSA A   
Sbjct: 209 GVHQGIALQTAA--SKTLDLQTLIDGCSQLGESSVLIALDGLTDPHNVGAIIRSAEALGA 266

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +R S   +  +AK A+GALEH P  R+ NL  +L ++   G+  IGL+ D    
Sbjct: 267 HGLVLPQRRSAGLTGSVAKVAAGALEHFPVARVVNLNRSLIELKDAGYSVIGLAGDGDFV 326

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L +      + L++G+E KGL   T+     +  + + G+  +LN S AA+++LY
Sbjct: 327 LNEVDLLGPLVLVIGSEDKGLSVLTRRNCDQLVRVPLRGVTSSLNASVAASISLY 381


>gi|332365573|gb|EGJ43333.1| RNA methyltransferase [Streptococcus sanguinis SK1059]
          Length = 247

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
           + S  +N  +YGVH V+ AL  N   K++     +        D        +   P +T
Sbjct: 3   YYSYGKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKT 62

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154
           + ++    AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A
Sbjct: 63  LQEMT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A +  G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+    F   G   
Sbjct: 122 DATNVAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEASFWIFGTDM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 182 QG-TPSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 240


>gi|237798286|ref|ZP_04586747.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021138|gb|EGI01195.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 253

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH + A L ++P R     LA      R+    +L     V     +  +     E 
Sbjct: 7   IYGVHALEALLRHHPKRVKHIWLAEGRNDPRVQTLVSLASENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD      LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 238


>gi|322513916|ref|ZP_08066993.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
           ureae ATCC 25976]
 gi|322120251|gb|EFX92204.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
           ureae ATCC 25976]
          Length = 247

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A L+N   ++ ++L  K           N L RL           ++ V  Q
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLSPLLNELQRLG--------ISIQQVNRQ 56

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
           T+D     E VHQG+  +  P   L    LD +   + +  L++LD V DPHN+GA LR+
Sbjct: 57  TLDNKAQGE-VHQGIIAKVVPQKELNEHDLDVILSQKQNPFLLILDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A     D +I  K  S   ++   K A GA E +P IR++NL      LQ+ H+ W    
Sbjct: 116 ADVAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIW---I 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   + Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGEATSGIYQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232

Query: 270 AVALY 274
            V L+
Sbjct: 233 GVCLF 237


>gi|319763224|ref|YP_004127161.1| RNA methyltransferase, trmh family, group 3 [Alicycliphilus
           denitrificans BC]
 gi|317117785|gb|ADV00274.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
           denitrificans BC]
          Length = 248

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 86/148 (58%), Gaps = 1/148 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V N  LL+VLD V DPHN+GA LR A       +I  K ++   SA +AK ASGA E 
Sbjct: 95  DGVANP-LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGISATVAKVASGAAET 153

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +PY  ++NL   L ++       IG S D+ K L Q      +AL+LGAEG G+R  T++
Sbjct: 154 VPYFMVTNLARTLGELKERNIWVIGTSGDADKTLYQVDLKGPVALVLGAEGPGMRQLTRK 213

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
           T   +  + M G +++LNVS A+AV LY
Sbjct: 214 TCDELVSIPMKGAVESLNVSVASAVCLY 241


>gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           furnissii CIP 102972]
 gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           furnissii CIP 102972]
 gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 246

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N F+YG+H V+A L  +P+R +           +LL   N LARL       H   +   
Sbjct: 3   NEFIYGIHAVNAVLERDPARFVEAYVLKGRQDDRLLPVLNELARLGISIQEMHRKALD-- 60

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150
                DK  G  A HQG+  +  P   L    LD +       LL+VLD V DPHN+GA 
Sbjct: 61  -----DKAQG--ANHQGVIAKVKPAKQLNENDLDDIIAQHPQPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGIWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  
Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVATG 233

Query: 271 VALY 274
           + L+
Sbjct: 234 ICLF 237


>gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 313

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 134/268 (50%), Gaps = 24/268 (8%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75
           +H  KL +  RD         + RH  +     + G + V   L++  P+  ++    TK
Sbjct: 48  AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECLHSKVPATSLYIAEGTK 98

Query: 76  NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPT 125
           N  ARL     + H    P+  V    +D++ G   +HQG+ L+  P        L++  
Sbjct: 99  ND-ARLSEAVQMAHRRGIPLIEVARHELDRMTGN-GMHQGIGLQIPPYKYVEVYDLITQA 156

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            D+     +++VLD++ DP N+GA++RS  AF   G++  +R S S +AV  ++++G   
Sbjct: 157 KDS-GEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAA 215

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P  + +N+T AL++    G+Q +GL +     L+       + +++G+EGKG+    +
Sbjct: 216 RLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGISRLVR 275

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ET  S+  + M   +++LN S AA V L
Sbjct: 276 ETCDSIMSIPMARWVESLNASVAAGVVL 303


>gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis C231]
          Length = 313

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 134/268 (50%), Gaps = 24/268 (8%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75
           +H  KL +  RD         + RH  +     + G + V   L++  P+  ++    TK
Sbjct: 48  AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECLHSKVPATSLYIAEGTK 98

Query: 76  NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPT 125
           N  ARL     + H    P+  V    +D++ G   +HQG+ L+  P        L++  
Sbjct: 99  ND-ARLSEAVQMAHRRGIPLIEVARHELDRMTGN-GMHQGIGLQIPPYKYVEVYDLITQA 156

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            D+     +++VLD++ DP N+GA++RS  AF   G++  +R S S +AV  ++++G   
Sbjct: 157 KDS-GEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAA 215

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P  + +N+T AL++    G+Q +GL +     L+       + +++G+EGKG+    +
Sbjct: 216 RLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVVIVVGSEGKGISRLVR 275

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ET  S+  + M   +++LN S AA V L
Sbjct: 276 ETCDSIMSIPMARWVESLNASVAAGVVL 303


>gi|116514573|ref|YP_813479.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093888|gb|ABJ59041.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 249

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L         K+F     +   AR  +         ++ VP  
Sbjct: 2   SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        +  L++LD++ DPHN+G+ILRS
Sbjct: 62  KLDKLTGGEN-HQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N K  L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 181 MEGDD-YRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239

Query: 274 Y 274
           Y
Sbjct: 240 Y 240


>gi|241765241|ref|ZP_04763223.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
           2AN]
 gi|241365073|gb|EER59958.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
           2AN]
          Length = 248

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQT--IDKIV 105
            L+G H V   L    + I ++   AT+   AR+    +       + +   +  I K+ 
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYYEATRRD-ARMRQFLDRAREAGARLIEADSVRIAKLA 64

Query: 106 GKEAVHQGLALETAPLLSPT--------LDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156
           G    HQG+A    P+   T        L+A    Q LL+VLD V DPHN+GA LR A  
Sbjct: 65  GSHG-HQGVAARVEPVAQVTSLDELLENLEAAGIEQPLLLVLDGVTDPHNLGACLRVADG 123

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+
Sbjct: 124 AGAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDA 183

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K + Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 184 PKTIYQVDLKGPVALVLGAEGDGMRQLTRKTCDELVSIPMKGAVESLNVSVASGVCLY 241


>gi|186476454|ref|YP_001857924.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184192913|gb|ACC70878.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phymatum
           STM815]
          Length = 247

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 111 HQGLALETA--PL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+       PL   L+  LD ++   LL+VLD + DPHN+GA LR A A     +I  
Sbjct: 69  HQGVVARAGDVPLAQNLAELLDGIQGPPLLLVLDGITDPHNLGACLRVADAAGAHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++   L +   
Sbjct: 129 RDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGIWVVGTAGEATASLYETKL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+
Sbjct: 189 DGPVALVMGAEGEGMRRLTRDTCDEVMQIPMAGSVESLNVSVASGVCLF 237


>gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 331

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 89/146 (60%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD + DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 176 LFIALDGITDPQNLGAVIRSAAAFGVNGVILPERRSASVNAAAWKVSAGAAAHMPIARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+ +IGL     K + E   + D + ++LG+EGKGL   T+E   ++A
Sbjct: 236 NLTKAIEALKERGYYSIGLDGGGSKLVGETGFETDPLVVVLGSEGKGLSRLTREACDAIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA +ALY T N
Sbjct: 296 SIPITSAVESLNASVAAGIALYATVN 321


>gi|300115389|ref|YP_003761964.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299541326|gb|ADJ29643.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus watsonii
           C-113]
          Length = 284

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 124/244 (50%), Gaps = 22/244 (9%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKI 104
           YG+H V AAL  P+ ++  L   +         LA+L +D  L    PVK    + +D++
Sbjct: 31  YGLHAVRAALEQPALQVMALWLDQTRMDQSLQKLAKLAFDRGL-KAQPVKR---EELDEL 86

Query: 105 VGKEAVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           V   A HQG+        AL    LL+  LD +    LL++LD V DPHN+GA LR+A A
Sbjct: 87  V-PGARHQGVVARCSVQSALTEEGLLA-FLDQLGTPPLLLLLDGVQDPHNLGACLRTAEA 144

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSD 215
               G++  K  +   +AV  K ASGA E +P +R++NL   ++ +   G   +G +   
Sbjct: 145 AGVHGVVVPKDRAAGLTAVARKVASGAAERVPLVRVTNLARVMRALRERGLWLVGAVVGG 204

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +   L +      + L+LGAE +GLR  TQE    +  + M G + +LNVS AA V L+ 
Sbjct: 205 THATLYETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFE 264

Query: 276 TQNH 279
            Q  
Sbjct: 265 AQRQ 268


>gi|189424926|ref|YP_001952103.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
 gi|189421185|gb|ACD95583.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
          Length = 246

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 14/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            LYG++ V  AL   +RK F+L      T   +A+L   A       V+      ++++ 
Sbjct: 5   ILYGINPVREALRG-NRKAFELFVQTGGTDQRIAKLATLAE-EKGIAVRRRERADLERLA 62

Query: 106 GKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFS 158
           G    HQG+ L+ AP +   L D + N Q       L+VLD + DP N+GA++RSA    
Sbjct: 63  GNPH-HQGVVLKVAPFIYAELEDFLANHQESEGGMFLLVLDRIQDPQNLGALIRSAACAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+ K+++GA+E IP I+++NL   L+++   G    GL+ ++ K
Sbjct: 122 VQGVIIPKDRACGMTPVVEKASAGAVETIPVIQVTNLVQTLERLKQAGCWIFGLAGEANK 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + Q      +AL++G+EG+G+RP  ++    +  +   G I +LN S A  + L+
Sbjct: 182 DIYQADYRGNLALVVGSEGEGIRPLVRKHCDLLLAIPHYGGISSLNASVAGGIVLF 237


>gi|292489612|ref|YP_003532502.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292898167|ref|YP_003537536.1| 23S_rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
           ATCC 49946]
 gi|291198015|emb|CBJ45118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
           ATCC 49946]
 gi|291555049|emb|CBA23125.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312173789|emb|CBX82043.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 245

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H V A L++ P R  ++F L    +   +    A       ++    Q +D    
Sbjct: 4   IVFGIHAVQALLDSCPQRFQEVFILKGRDDRRLQTLVKALEAQGIVIQVANKQMLDN-TS 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG+     P         P L A   +  L++LD V DPHN+GA +RSA A    
Sbjct: 63  EGAVHQGIIARVKPGRQYQEGDLPDLLASLENPFLLILDGVTDPHNLGACMRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A   K ASGA EHIP IR++NL   ++ +       +G + ++   L
Sbjct: 123 AVIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADHTL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 183 HQSRMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|124267007|ref|YP_001021011.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124259782|gb|ABM94776.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 247

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 5/169 (2%)

Query: 111 HQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+   +  AP    L   LD V    LL+VLD V DPHN+GA LR A       +I  
Sbjct: 70  HQGVVAKVTAAPATKSLDDLLDTVEGPPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAP 129

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K ++   +A +AK ASGA E +PY  ++NL   L ++       IG + D+ + L     
Sbjct: 130 KDHAVGINATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTADDAPRTLYAADL 189

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +AL+LGAEG+G+R  T++T   +  L M G +++LNVS A+ + LY
Sbjct: 190 RQAVALVLGAEGQGMRQLTRKTCDELVSLPMAGAVESLNVSVASGIGLY 238


>gi|264679078|ref|YP_003278985.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           CNB-2]
 gi|299533339|ref|ZP_07046722.1| RNA methyltransferase [Comamonas testosteroni S44]
 gi|262209591|gb|ACY33689.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           CNB-2]
 gi|298718655|gb|EFI59629.1| RNA methyltransferase [Comamonas testosteroni S44]
          Length = 256

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY  ++
Sbjct: 101 LLLVLDGVTDPHNLGACLRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 160

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   L+++   G   IG S D+ K L Q       AL+LGAEG G+R  T++T  ++  
Sbjct: 161 NLARTLKELKERGIWIIGTSGDADKHLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVS 220

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LNVS A+ V LY
Sbjct: 221 IPMQGAVESLNVSVASGVCLY 241


>gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas
           arsenicoxydans]
 gi|133738407|emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Herminiimonas arsenicoxydans]
          Length = 247

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 6/176 (3%)

Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           IVG    HQG+  +   L     L   LDA+    LL+VLD + DPHN+GA LR A    
Sbjct: 62  IVGTRR-HQGVVAKAGELSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  +   +A  AK ASGA + +PYI ++NL   L+++       IG + DS+K
Sbjct: 121 AHAVIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDILLIGTTDDSEK 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L +   +   ALI+G+EG+G+R  T+ET   +  + M G +++LNVS A+ V LY
Sbjct: 181 GLYEADFSGPAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLY 236


>gi|225871259|ref|YP_002747206.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700663|emb|CAW95241.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 248

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 7/172 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           AVHQG AL  +      LD +       ++ LL++LD + DPHN G+ILR+A A    G+
Sbjct: 71  AVHQGFALRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSILRTADATGVCGV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G +  +  P  +
Sbjct: 131 IIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG-TDVTGTPSYK 189

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 190 WNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMY 241


>gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           atlantica T6c]
 gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 246

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHP----FPVKTVPPQTIDK 103
           +LYG+H + A +     ++ +L   K    R D   N  + H       V+    +T+D 
Sbjct: 6   WLYGIHALEAVIEREPERLIELFVLK---GRDDKPINSIINHARKFGIAVQFCQRKTLDD 62

Query: 104 IVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            V  E  HQG+  +  P        LD +     +  L++LD V DPHN+GA LR+A A 
Sbjct: 63  KVNGEQ-HQGVVAKAKPGKQFNENDLDEIIKKSATPFLLILDGVTDPHNLGACLRTADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D I+  K  S + + V+ K A GA + IP I+++NL   L+++   G   +G + ++ 
Sbjct: 122 GIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEAT 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +        IAL++GAEGKG+R  T+E    +  L M G + +LNVS A  + LY
Sbjct: 182 QSIYDCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGICLY 238


>gi|257067130|ref|YP_003153386.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           DSM 20548]
 gi|256799010|gb|ACV29665.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           DSM 20548]
          Length = 234

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 110/192 (57%), Gaps = 5/192 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +  V  +  DKI   +  HQG+ LE       +L+ + +S  L++LD + DPHN+GAI
Sbjct: 45  IEISFVDKRFFDKI---DMNHQGVMLEVESFKYSSLEDLSDSSRLIILDKIEDPHNLGAI 101

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA +F  D +I  +R S S ++ + K+++GA+ +I  +R++NLT  ++ +   GF   
Sbjct: 102 IRSAESFGFDAVIIPERRSASVTSTVYKTSAGAINNIKVVRVTNLTRTIKDLKDKGFWIY 161

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL+ ++   +       K+ L++G EG+G+    +E    + ++ M G + +LN S AAA
Sbjct: 162 GLAGEAHSDISHADLRGKVGLVVGNEGEGISRLVRENCDMLINIPMLGRVNSLNASVAAA 221

Query: 271 VALY--ITQNHF 280
           +++Y  + QN F
Sbjct: 222 ISMYELLRQNGF 233


>gi|329117061|ref|ZP_08245778.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parauberis NCFD 2020]
 gi|326907466|gb|EGE54380.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parauberis NCFD 2020]
          Length = 249

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 126/256 (49%), Gaps = 35/256 (13%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84
           K     +  N  +YGVH V  +L  N   K++             + LAT+  ++ + W 
Sbjct: 2   KDNQLIEENNDMVYGVHAVVESLTANTGNKLYIQDDLRGKNVDKIKALATEKKVS-ISW- 59

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL 138
                  P K++   T        AVHQG  L  A      LD +       ++ L+++L
Sbjct: 60  ------TPKKSLSEMT------DGAVHQGFVLRVAEYAYAELDEIISKADAEDNPLILIL 107

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN G+ILR+A A    G+I  K  +   + V+AK+++GA++H+P  R++NL+  
Sbjct: 108 DGITDPHNFGSILRTADATKVAGVIIPKHRAVGVTPVVAKTSTGAIQHMPIARVTNLSQT 167

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L K+   G+   G   D   P  +   + K+ALI+G+EGKG+    ++    M  + M G
Sbjct: 168 LDKLKEKGYWIFGTDMDG-TPSPKWNTSGKLALIIGSEGKGVSHNIKKQVDEMITIPMDG 226

Query: 259 IIKALNVSNAAAVALY 274
            +++LN   AAAV +Y
Sbjct: 227 HVQSLNAGVAAAVLMY 242


>gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
          Length = 338

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 126/242 (52%), Gaps = 20/242 (8%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQT 100
           E   LYG  +V AAL N SR + ++  T+    R D       DA       +  V P+ 
Sbjct: 89  EAELLYGKQSVLAALQN-SRPLNRVWLTEKL--RYDPRFLRLLDAAKAGGAVIDIVEPRR 145

Query: 101 IDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +D++      HQG+A + A         L++  ++  R   +L+  D + DPHN+GA++R
Sbjct: 146 LDQLTAG-GNHQGVAAQAAAHPYVEFEELIASLVE--RPDPVLLAADGIEDPHNLGALIR 202

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   GII  +R +   +A +AK A+GA+EH+P  R++NL  A++++   G+Q +G 
Sbjct: 203 SAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARVTNLNQAIERLKEAGYQVVGT 262

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
              + + L +   +  + +++G+EGKG+   TQ     M  + + G   +LN S A  + 
Sbjct: 263 QEKASQALYELKLDGPLVVVVGSEGKGISLLTQRHCDHMVSIPLAGKTTSLNASVAGGIM 322

Query: 273 LY 274
           LY
Sbjct: 323 LY 324


>gi|325697470|gb|EGD39356.1| RNA methyltransferase [Streptococcus sanguinis SK160]
          Length = 242

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 9/235 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 3   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 63  -DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P
Sbjct: 122 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TP 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     K+ALI+G E KG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 181 SHKWNTAGKLALIIGNEAKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMY 235


>gi|120555299|ref|YP_959650.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325148|gb|ABM19463.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Marinobacter aquaeolei
           VT8]
          Length = 245

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAAL-NNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +++G H V A L   P R  +++     ++   +   DA      P K V  + +D+ V 
Sbjct: 5   YVFGWHAVDAVLKREPERLQRVWIQTGRQDKRVKSVTDALDGLGVPWKVVHRKELDERV- 63

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              VHQG+    A     T D       A      L+VLD V DPHN+GA +R+A A   
Sbjct: 64  -SGVHQGVVAAVAESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S S + V  K A GA E +P++R++NL   L+++   G   IG + ++   
Sbjct: 123 QAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRELKDQGVWLIGTAGEADAT 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +AL++GAEGKG+R  T+E    + ++ M G + +LNVS A  V LY
Sbjct: 183 LYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLY 237


>gi|295396932|ref|ZP_06807055.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294974825|gb|EFG50529.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 271

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 136/266 (51%), Gaps = 26/266 (9%)

Query: 28  RDYKKMQSFNQKSRHTSQPENL-----FLYGVHTVSAAL--NNPSRKIF--QLLATKNAL 78
           RD ++ Q+ +++ R T+  E L     F+YG H     L  ++   K+F    L  KNA 
Sbjct: 3   RDNQRQQNRDRRPRSTNNEEELDQSPDFVYGFHAAMEVLEGDHDVNKVFLQTGLNEKNAQ 62

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RN 131
           A L   A       V  VP + +D +      HQG+ +  A      L+ +         
Sbjct: 63  AILK--AANKRNILVSNVPKEKLDTL-SDGGNHQGVVMAIAAYKYAELEDIFKKAEEANE 119

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             ++MVLD + DPHN+G+ILR+A A    G+I   R +   + V+AK+++GA+EH+P +R
Sbjct: 120 DPIIMVLDGIEDPHNLGSILRTADASGVHGVIIQNRRAVGLTQVVAKTSTGAIEHVPVVR 179

Query: 192 ISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           ++N++   D L++   W F T  +   S   ++  +    IA+++G EGKG+ P  ++  
Sbjct: 180 VTNISKTIDLLKERGVWVFGT-DMKGQSMWQMDAAL---PIAVVIGNEGKGVSPGVKKHL 235

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             M  + M G +++LN S AA + +Y
Sbjct: 236 DGMITIPMRGHVQSLNASVAAGLLMY 261


>gi|330825418|ref|YP_004388721.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
           K601]
 gi|329310790|gb|AEB85205.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
           denitrificans K601]
          Length = 248

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 86/148 (58%), Gaps = 1/148 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V N  LL+VLD V DPHN+GA LR A       +I  K ++   SA +AK ASGA E 
Sbjct: 95  DGVANP-LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGISATVAKVASGAAET 153

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +PY  ++NL   L ++       IG S D+ K L Q      +AL+LGAEG G+R  T++
Sbjct: 154 MPYFMVTNLARTLGELKERNIWVIGTSGDADKTLYQVDLKGPVALVLGAEGPGMRQLTRK 213

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
           T   +  + M G +++LNVS A+AV LY
Sbjct: 214 TCDELVSIPMKGAVESLNVSVASAVCLY 241


>gi|170723830|ref|YP_001751518.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169761833|gb|ACA75149.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           W619]
          Length = 248

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L +  +++ Q+ L+   +  R+     L     V+    +  +     E 
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ + Q
Sbjct: 127 VVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 187 QDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLF 238


>gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073973|gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 245

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 5/169 (2%)

Query: 111 HQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+     AL  A  L   LDAV    LL++LD + DPHN+GA LR A       +I  
Sbjct: 68  HQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAHAVIAP 127

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  +   +A   K +SGA + +PYI ++NL   ++ +   G   IG S D++K L +   
Sbjct: 128 KDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEKGLYEGDF 187

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               AL++G+EG+G+R  T+ET   + ++ M G +++LNVS A+ V LY
Sbjct: 188 TGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLY 236


>gi|257465576|ref|ZP_05629947.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           202]
 gi|257451236|gb|EEV25279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           202]
          Length = 246

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 121/245 (49%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A L+N   ++ ++   K           N L RL           ++ V  Q
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLG--------IAIQQVNRQ 56

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153
           T+D     E VHQG+  +  P   L    LD +  S+   LL++LD V DPHN+GA LR+
Sbjct: 57  TLDNKSQGE-VHQGIIAKVVPQKELNEHDLDRILASKSQPLLLILDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   D +I  K  S   ++   K A GA E +P IR++NL      LQ+ H+ W    
Sbjct: 116 ADATGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVW---I 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   + +      IAL++GAEG G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGEATSSIYEAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232

Query: 270 AVALY 274
            + L+
Sbjct: 233 GICLF 237


>gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9301]
          Length = 334

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALE-----TAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+AL+     T PL      +  N  + +++  D + DPHN+GAI+RSA AF C G
Sbjct: 157 ASHQGVALQLACSKTIPLEQLIYFSKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKG 216

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R S   +  +AK A+GALEH+   R+ NL  AL+++   GF  +GLS D +  + 
Sbjct: 217 VIIPQRRSAGLTGTVAKVAAGALEHLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISIS 276

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +   + +++G+E KG+   TQ+    +  + + G   +LN S AAA++LY
Sbjct: 277 NFQEKAPLVVVVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNASVAAAISLY 329


>gi|227510713|ref|ZP_03940762.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189834|gb|EEI69901.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 255

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 16/246 (6%)

Query: 41  RHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTV 96
           +H  + E  F+ G H V AAL  ++P  K+F     K     +     L       +  V
Sbjct: 2   KHDQENEE-FVMGRHPVVAALKSDSPINKLFIQTGIKKDENIISEILKLARKKRLVISEV 60

Query: 97  PPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           P Q +D++ VG+   HQG+ L  A     T+D +             ++LD++ DPHN+G
Sbjct: 61  PKQKLDRLSVGQN--HQGVVLSVAAFEYATVDDLFVNAKKQETEPFFVILDNIEDPHNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I+R+A A    GII  K  +   +AV+AK+++GA+E +P  R++NL   ++++ S G  
Sbjct: 119 SIIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKSRGMW 178

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G   +       + K   +A+I+G EGKG+ P  ++    M  + M G I++LN S A
Sbjct: 179 VFGTDIEGTDYRRWDAKG-SVAIIIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLNASVA 237

Query: 269 AAVALY 274
           A+V +Y
Sbjct: 238 ASVLIY 243


>gi|188535077|ref|YP_001908874.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
 gi|188030119|emb|CAO98005.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 245

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H V A L+ +P R  ++F L   ++   +    A       ++    Q +D    
Sbjct: 4   IVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN-TS 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG+     P         P L    ++  L++LD V DPHN+GA +RSA A    
Sbjct: 63  EGAVHQGIIARVKPGRQYQEGDLPDLLNSLDNPFLLILDGVTDPHNLGACMRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  K  S + +A   K ASGA EHIP IR++NL   ++ +       +G + ++   L
Sbjct: 123 AIIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADHTL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 183 YQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|152979716|ref|YP_001345345.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           succinogenes 130Z]
 gi|150841439|gb|ABR75410.1| RNA methyltransferase, TrmH family, group 3 [Actinobacillus
           succinogenes 130Z]
          Length = 245

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 118/234 (50%), Gaps = 11/234 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V + L      + ++ A K     RL    N  H     V+ +  QT+D     
Sbjct: 5   IYGIHAVKSFLERTPELVVEVYALKGRDDKRLQPLLNELHNLGISVQFLNRQTLDNKAHG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P   L    LD + N +   LL+VLD V DPHN+GA LR+A A   D 
Sbjct: 65  E-VHQGIIARVQPAKELNESDLDNILNGKPNPLLLVLDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL   L+ +  S     +G + ++ + L
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVLPLIRVTNLARTLRDIQQSHNIWVVGTAGEASETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 184 YQTELTGSLALVMGAEGDGMRRLTRECCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|312865506|ref|ZP_07725733.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
           F0415]
 gi|311099024|gb|EFQ57241.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
           F0415]
          Length = 246

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 127/249 (51%), Gaps = 23/249 (9%)

Query: 45  QPENLFLYGVH-TVSAALNNPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTV 96
           Q  +  +YG+H TV A   N   K++    L  KN     ALA             +  +
Sbjct: 5   QEHDDIVYGLHATVEALEANTGNKLYIQDDLKGKNVDKIKALAA-------QKKVAISWI 57

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150
           P +++ ++  + AVHQG  L  +      L A+       ++ L+++LD + DPHN+G+I
Sbjct: 58  PKKSLSEMT-QGAVHQGFVLRVSEFAYSDLAAILAQADQEDNPLILILDGLTDPHNLGSI 116

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A    GII  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   G+   
Sbjct: 117 LRTADATGVAGIIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGYWIF 176

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   D   P  +     K+ALI+G EG+G+    ++    M  + M G +++LN S AAA
Sbjct: 177 GTDMDG-TPSHKWNTAGKLALIIGNEGRGISANLKKQVDEMITIPMTGHVQSLNASVAAA 235

Query: 271 VALYITQNH 279
           V +Y    H
Sbjct: 236 VLMYEVFRH 244


>gi|313201452|ref|YP_004040110.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440768|gb|ADQ84874.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
           MP688]
          Length = 249

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVK--TVPPQTIDKIVG 106
            L+G H V + L      + ++L  K+ + AR+    NL     V+   V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHGASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDGMAG 65

Query: 107 KEAVHQGLALETA--PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+       P+    +  +  S L      +VLD V DPHN+GA LR A A   
Sbjct: 66  ANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E IP+I ++NL   L+++   G   +G ++D+   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADAPGN 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     +  +AL+LGAEG GLR  T ET  ++  + M G +++LNVS A+ + LY
Sbjct: 186 LFTTKLDGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLY 240


>gi|269467951|gb|EEZ79686.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 247

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 29/249 (11%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------PHPFPVKTVPPQT 100
           ++LF+YG H + A L+   + I ++    N   R D   N        H   V+    Q 
Sbjct: 3   KSLFIYGFHGIQAQLDTNPQNILKVSTLDN---RQDKRLNTLIQQLDQHGIRVEKTSKQK 59

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL---DAVRNS-------QLLMVLDHVNDPHNIGAI 150
           ++K+ G    HQG+    A +L PTL   D + N         L+++LD + DP N+GA 
Sbjct: 60  LEKLSGSRT-HQGVV---AEVLLPTLPNHDELLNHVSKLNHPSLILILDSIQDPRNLGAC 115

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWGF 207
           LRSA A   D ++  K  S   +A++ K+++GAL  +    ++NL+    ALQK   W  
Sbjct: 116 LRSANAAGVDCVVINKDGSAPVNALVHKTSAGALNQLKVFSVTNLSRSIKALQKQDIW-- 173

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             IGL   + +   Q   +  IA+++G EG GLR  T+++   +A + M G +++LNVS 
Sbjct: 174 -IIGLDGSTDQSFYQIDLSSSIAIVMGTEGSGLRRLTKQSCDQLAMIPMKGNVESLNVSV 232

Query: 268 AAAVALYIT 276
           A  +AL+ T
Sbjct: 233 ATGIALFET 241


>gi|118586220|ref|ZP_01543685.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
 gi|118433349|gb|EAV40050.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
          Length = 254

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 15/235 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YGVH     L N ++ I +L  +K    N   +    A   +   V+ V  Q +D++ 
Sbjct: 14  IVYGVHASMETLEN-NQTINKLYLSKSLAKNRAQQFRQTAE-QNKIVVQEVDNQRLDELT 71

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                HQG+AL  A      LD + N        L++LD + DPHN+G+ILR+A A   D
Sbjct: 72  -NHGNHQGIALSIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGSILRTADATGVD 130

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR +   + V+AK+++GA+EH+P  R+ N+ + + K+    F   G  +D K   
Sbjct: 131 GIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNINNTIDKLKKANFWIFG--TDMKGAD 188

Query: 221 EQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   D  +A+++G EGKG+  +T++    M  + M G +++LN S AAA+ +Y
Sbjct: 189 YTDWNADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAAALLIY 243


>gi|117617585|ref|YP_855245.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117558992|gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 249

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 26/244 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H VSA L     +  ++ A K          LA LD          V++V  +T+
Sbjct: 5   LIYGIHAVSALLERTPERFIEVWALKGRDDDRLQPLLAELD-----ALGLKVQSVNRKTL 59

Query: 102 D-KIVGKEAVHQGLA--LETAPLLSP-----TLDAVRNSQ---LLMVLDHVNDPHNIGAI 150
           D K  G    HQG+   ++ AP L+       LD +   Q    L+VLD V DPHN+GA 
Sbjct: 60  DDKAEGNN--HQGIMARVKEAPKLAEHDLASLLDKLAEQQTQPFLLVLDGVTDPHNLGAC 117

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA A     +I  +  +   + ++ K A GA E +P I+++NL  +L+++   G   +
Sbjct: 118 LRSADAAGVHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARSLRELQERGVWIV 177

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +AL++GAEGKG+R  T+E    +  + M G + +LNVS A  
Sbjct: 178 GTAGEADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATG 237

Query: 271 VALY 274
           V L+
Sbjct: 238 VCLF 241


>gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 322

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 8/185 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIG 148
           VP   +D++     +HQG+AL+  P         L A R+ Q   LL+ LD++ DP N+G
Sbjct: 130 VPRTDLDRM-SANGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDNITDPRNLG 188

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+   S G Q
Sbjct: 189 AVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQSKGVQ 248

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +     L+       + +++G+EGKGL    +ET  S+  + M G +++LN S A
Sbjct: 249 VVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEVESLNASVA 308

Query: 269 AAVAL 273
           A V L
Sbjct: 309 AGVVL 313


>gi|238918378|ref|YP_002931892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|238867946|gb|ACR67657.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 247

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L  +P R   +F +   ++                V+    Q +D+ V 
Sbjct: 4   IIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEKV- 62

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + AVHQG+     P        L   L  + +   L++LD V DPHN+GA LRSA A   
Sbjct: 63  EGAVHQGIVARVKPGRQYQENDLPDLLAGLEHPPFLLILDGVTDPHNLGACLRSADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I  +  S   +A   K A GA E++P IR++NL   ++ +       +G + ++   
Sbjct: 123 DAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTIRLLQQENIWIVGTAGEADHS 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 183 LYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 237


>gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 321

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 102/185 (55%), Gaps = 8/185 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIG 148
           VP   +D++     +HQG+AL+  P         L A R+ Q   LL+ LD++ DP N+G
Sbjct: 129 VPRTDLDRM-SANGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDNITDPRNLG 187

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+   S G Q
Sbjct: 188 AVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQSKGVQ 247

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +     L+       + +++G+EGKGL    +ET  S+  + M G +++LN S A
Sbjct: 248 VVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAGEVESLNASVA 307

Query: 269 AAVAL 273
           A V L
Sbjct: 308 AGVVL 312


>gi|222110801|ref|YP_002553065.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
 gi|221730245|gb|ACM33065.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax ebreus
           TPSY]
          Length = 248

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 11/174 (6%)

Query: 111 HQGLALETAPL-----LSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           HQG+A     +     L   LD      V+N  LL+VLD V DPHN+GA LR A      
Sbjct: 69  HQGVAARVEAVAQVRTLDELLDELEARGVKNP-LLLVLDGVTDPHNLGACLRVADGAGAH 127

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ K L
Sbjct: 128 AVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDADKTL 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY
Sbjct: 188 YQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLY 241


>gi|167855195|ref|ZP_02477965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           29755]
 gi|167853648|gb|EDS24892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           29755]
          Length = 244

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 26/241 (10%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V + L+    ++ ++   K           N L RL           V+ V  Q
Sbjct: 5   IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLG--------IRVQQVNRQ 56

Query: 100 TIDKIVGKEAVHQGLA---LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153
            +D     E VHQG+    ++   L    LD + + +    L++LD V DPHN+GA LR+
Sbjct: 57  ALDNKAQGE-VHQGIIAKIIQAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   D +I  K  S   ++   K A GA E +P IR++NL   ++++       +G +
Sbjct: 116 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTA 175

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ + L Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L
Sbjct: 176 GEATESLYQVKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCL 235

Query: 274 Y 274
           +
Sbjct: 236 F 236


>gi|119502817|ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
 gi|119461163|gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
          Length = 247

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 28/250 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTID 102
           ++YG H V A L    R I  L    N        L +L  D  +     V+ V    +D
Sbjct: 4   WVYGFHAVEALLRREPRAIATLWLETNRRDKRAQTLLQLAADQGVA----VERVSGAALD 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVNDPHNIGAIL 151
           ++      HQG+A++       T +A+           ++S LL++LD V DPHN+GA L
Sbjct: 60  EVAAGR--HQGIAVQVKS--GATTEAIDEAGLMVLLQRQDSPLLLILDGVTDPHNLGACL 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A     ++  +  +   S V  K A GA + +P++R++NL   L ++ + G   IG
Sbjct: 116 RTADAAGVTAVVVPQDGAAGLSPVARKVACGAADTVPFVRVTNLARTLGQLKAAGVWLIG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            S  + + L ++  +  +A+++GAEG G+R  T+E    +  L M G + +LNVS A  +
Sbjct: 176 TSDKASRTLFEQDFSGPVAIVMGAEGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGI 235

Query: 272 ALY--ITQNH 279
            L+  + Q H
Sbjct: 236 CLFEAVRQRH 245


>gi|221066327|ref|ZP_03542432.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           KF-1]
 gi|220711350|gb|EED66718.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           KF-1]
          Length = 256

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY  ++
Sbjct: 101 LLLVLDGVTDPHNLGACLRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 160

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   L+++   G   IG S D+ + L Q       AL+LGAEG G+R  T++T  ++  
Sbjct: 161 NLARTLKELKERGIWIIGTSGDADRHLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVS 220

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LNVS A+ V LY
Sbjct: 221 IPMQGAVESLNVSVASGVCLY 241


>gi|121610346|ref|YP_998153.1| RNA methyltransferase [Verminephrobacter eiseniae EF01-2]
 gi|121554986|gb|ABM59135.1| RNA methyltransferase, TrmH family, group 3 [Verminephrobacter
           eiseniae EF01-2]
          Length = 248

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 10/183 (5%)

Query: 101 IDKIVGKEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           I K+ G    HQG+A    P         LL     A     LL+VLD V DPHN+GA L
Sbjct: 60  IAKLAGSHG-HQGVAARVQPVAPISSLDELLEKLQAAGSGPPLLLVLDGVTDPHNLGACL 118

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A       +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG
Sbjct: 119 RVADGAGAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLDELKERSIWCIG 178

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D+   L Q      +AL+LGAEG G+R +T++T   +A + M G +++LNVS A+ +
Sbjct: 179 TCDDAPGTLYQLDLKGPVALVLGAEGSGMRQRTRKTCDELARIPMQGAVESLNVSVASGI 238

Query: 272 ALY 274
            LY
Sbjct: 239 CLY 241


>gi|121594611|ref|YP_986507.1| RNA methyltransferase [Acidovorax sp. JS42]
 gi|120606691|gb|ABM42431.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax sp. JS42]
          Length = 248

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 11/174 (6%)

Query: 111 HQGLALETAPL-----LSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           HQG+A     +     L   LD      V+N  LL+VLD V DPHN+GA LR A      
Sbjct: 69  HQGVAARVEAVAQVRTLDELLDELEARGVKNP-LLLVLDGVTDPHNLGACLRVADGAGAH 127

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ K L
Sbjct: 128 AVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDADKTL 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY
Sbjct: 188 YQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLY 241


>gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
 gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
          Length = 249

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 106/189 (56%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145
           ++ VP + +D++V  +  HQG+  + A      LD +      +N Q   +VLD + DPH
Sbjct: 52  IQYVPRKKLDQMVSGQ--HQGIVAQVAAYEYAELDDLYKRAEEKNEQPFFLVLDELEDPH 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GI+  KR +   +  +AK+++GA+EHIP ++++NL   L++M   
Sbjct: 110 NLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLARTLEEMKER 169

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +G  + +++          +AL++G+EGKG+    +E    +  L M G + +LN 
Sbjct: 170 GIWVVGTDASAREDYRTMDGTMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNA 229

Query: 266 SNAAAVALY 274
           S AA + +Y
Sbjct: 230 SVAAGLLMY 238


>gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547]
 gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM
           20547]
          Length = 323

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/180 (36%), Positives = 100/180 (55%), Gaps = 7/180 (3%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAV 155
           +D++   E VHQGL L+  P     LD + ++      L + LD + DP N+GAI+RSA 
Sbjct: 134 LDRLSNGE-VHQGLVLQVPPYTYGDLDTLLDATADVTPLFVALDGITDPRNLGAIIRSAA 192

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF   GII T+R S   +A   ++++GA   +P  R++NL  ALQ++ S G   IGL +D
Sbjct: 193 AFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVARVTNLNRALQELRSQGIFVIGLDAD 252

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               L    +  D + +++G+EGKG+   T+E    +  + M    ++LN   AAAV LY
Sbjct: 253 GDVELPGLPLAPDPLVVVVGSEGKGISRLTREHCDQIVSIPMTAGNESLNAGTAAAVTLY 312


>gi|315037582|ref|YP_004031150.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325956064|ref|YP_004286674.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|312275715|gb|ADQ58355.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325332629|gb|ADZ06537.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|327182878|gb|AEA31325.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1118]
          Length = 250

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145
           V+TVP   +D++V +   HQGL L  +      LD + +          L++LD + DPH
Sbjct: 54  VQTVPKNKLDRLV-EGGNHQGLVLAISSFEYANLDQLLDQFDQEGKEPFLLMLDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202
           N+G+ILRSA A   DGII  KR++   ++V+AK+++GA++++P  R++NL   T  L+K 
Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T     D +    +   N K  L++G EGKG+ P  ++       L M G +++
Sbjct: 173 GYWIFGTDMAGVDYR----EWNANGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQS 228

Query: 263 LNVSNAAAVALY 274
           LN S A  V LY
Sbjct: 229 LNASVATGVLLY 240


>gi|254413736|ref|ZP_05027505.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179333|gb|EDX74328.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 328

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 124/241 (51%), Gaps = 19/241 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----- 104
            LYG H V AAL N  R++ ++      L +L +D                ID++     
Sbjct: 70  LLYGRHPVLAALEN-QRQLNRVWI----LPQLRYDHRFHSLLLQAKANGTVIDEVDSRRL 124

Query: 105 --VGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAV 155
             V + A HQG+A + AP     L   + A +++    +++V D + DPHN+GAI+R+A 
Sbjct: 125 SQVTQGANHQGVAAQVAPYSYKELGDLIKAAKSTSQYPVIVVCDGITDPHNLGAIIRTAE 184

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++  +R +   ++ + K A+GALE +P  R+ NL+ AL+++ + GF   G  +D
Sbjct: 185 ALGAQGLVIPQRRAVGVTSTVMKVAAGALETLPIARVVNLSRALEELKTAGFWIYGTCAD 244

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + K L     N  I L++G+EG GL   TQ     +  + + G   +LN S AAA+ LY 
Sbjct: 245 AGKLLHTVDLNGSIVLVIGSEGSGLSLLTQRCCDVLVSIPLYGKTPSLNASVAAAMTLYE 304

Query: 276 T 276
           T
Sbjct: 305 T 305


>gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 320

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 133/270 (49%), Gaps = 29/270 (10%)

Query: 28  RDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           R +KK +    K R   QP         +N  +YG H V +AL +  R + +L  T    
Sbjct: 33  RTHKKAEVIPPKPRLLDQPVQTKNSEEQDNDLIYGRHPVLSALES-HRNLNRLWIT---- 87

Query: 79  ARLDWDANLPHPF--------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAV 129
           +RL +D    H           +  V P+ +D+I      HQG+A + AP     L D +
Sbjct: 88  SRLRYDPRFHHLVLQAKDNGTVIDEVDPKRLDQITNG-GNHQGVAAQIAPYTYTELEDLI 146

Query: 130 RNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
             +Q     +++V D + DPHN+GAI+R+A A    G++  +R +   ++ + K A+GAL
Sbjct: 147 SQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGAL 206

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E+    R+ NL+ AL+++   GF   G ++   +PL          L++G+EG+GL   T
Sbjct: 207 ENFSVARVVNLSRALEQLKESGFWIYGTAATGSEPLHSVRFTGSTVLVVGSEGEGLSMLT 266

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q++   +  + + G   +LN S A  +ALY
Sbjct: 267 QKSCDVLVSIPLQGKTPSLNASVATGMALY 296


>gi|269137719|ref|YP_003294419.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983379|gb|ACY83208.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557775|gb|ADM40439.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Edwardsiella
           tarda FL6-60]
          Length = 247

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L  +P R   +F +   ++                V+    Q +D+ V 
Sbjct: 4   IIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEKV- 62

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + AVHQG+     P        L   L  + +   L++LD V DPHN+GA LRSA A   
Sbjct: 63  EGAVHQGIVARVKPGRQYQENDLPDLLAGLDHPPFLLILDGVTDPHNLGACLRSADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I  +  S   +A   K A GA E++P IR++NL   ++ +       +G + ++   
Sbjct: 123 DAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQQESIWIVGTAGEADHS 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 183 LYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 237


>gi|145589451|ref|YP_001156048.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047857|gb|ABP34484.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 251

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 8/172 (4%)

Query: 111 HQGLA-----LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQG+      +  A  ++  ++   ++Q   L +VLD V DPHN GA LR A     D +
Sbjct: 68  HQGVVALAEKITVARTITEVVEDAESAQKKPLFLVLDGVTDPHNFGACLRVADGAGVDAV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S S +A ++K +SGA E IP I ++NL  ++++M   G   +G   +++K +  
Sbjct: 128 VIPKDRSASINATVSKVSSGASEVIPVITVTNLVRSMKEMQEAGVWLVGTDDEAEKSIYD 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 IA+++GAEG+G+R  T+ET   +  + M G++++LNVS A+ V LY
Sbjct: 188 LDLTGPIAIVMGAEGEGMRRLTRETCDELVRIPMQGVVESLNVSVASGVCLY 239


>gi|240948309|ref|ZP_04752695.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           NM305]
 gi|240297348|gb|EER47889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           NM305]
          Length = 246

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A L+N   ++ ++   K           N L RL           ++ V  Q
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLG--------IAIQQVNRQ 56

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153
           T+D     E VHQG+  +  P   L    LD +  S+   LL++LD V DPHN+GA LR+
Sbjct: 57  TLDNKSQGE-VHQGIIAKVVPQKELNEHDLDRILASKPQPLLLILDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   D +I  K  S   ++   K A GA E +P IR++NL      LQ+ H+ W    
Sbjct: 116 ADAAGVDAVIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVW---I 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   +        IAL++GAEG G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGEATSSIYDAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232

Query: 270 AVALY 274
            V L+
Sbjct: 233 GVCLF 237


>gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
          Length = 442

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 100/173 (57%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQG+ L+TA   +  L+ + +S        LLM +D + DPHN+GAI+RSA A    G
Sbjct: 213 AVHQGIVLQTAAAQTHDLETLIDSCAGLGEAPLLMAVDGLTDPHNLGAIVRSAEALGAHG 272

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   +  +AK A+GALEH+P  R+ NL  +L+++   G++ +GL+ +    L 
Sbjct: 273 LVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLERLKDAGYRVVGLAEEGSATLA 332

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +  + ++ G+EG+GL   T+     +  + + G+  +LN S A A+ LY
Sbjct: 333 EADLDGPLVVVTGSEGQGLSMLTRRHCDQLVRIPLRGVTPSLNASVATALLLY 385


>gi|225867831|ref|YP_002743779.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701107|emb|CAW97954.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 248

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 100/172 (58%), Gaps = 7/172 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           AVHQG  L  +      LD +       ++ LL++LD + DPHN G+ILR+A A    G+
Sbjct: 71  AVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSILRTADATGVCGV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G +  +  P  +
Sbjct: 131 IIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG-TDVTGTPSYK 189

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 190 WNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMY 241


>gi|319442437|ref|ZP_07991593.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 318

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 14/200 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142
            PV  V    +D++ G   +HQG+ L+  P        L+    D+ R   L++VLD++ 
Sbjct: 118 IPVLEVARDEMDRMTGN-GMHQGIGLQVPPYKYAADDDLIERAKDSGRPG-LIVVLDNIT 175

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GA++RS  AF   G++  +R S S +AV  ++++G    +P  R +NL  +L+K 
Sbjct: 176 DPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVARATNLVRSLKKF 235

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G+Q +GL +     L+     D + +++G+EGKGL     ET   +  + M   +++
Sbjct: 236 QQSGYQVVGLDAGGSHTLDTYDGTDPVVVVVGSEGKGLSRLVGETCDDILSIPMTSTVES 295

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN S AA V L    + FA+
Sbjct: 296 LNASVAAGVVL----SEFAR 311


>gi|166365581|ref|YP_001657854.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166087954|dbj|BAG02662.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 288

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 106/181 (58%), Gaps = 8/181 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153
           +D+I  K A HQG+A + +P     L+  ++  +      ++++ + + DPHN+GAI+R+
Sbjct: 97  LDQITSK-ANHQGIAAQMSPYEYIELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRT 155

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A  C G++  +R +   ++ + K A+GALE++P  R+ NL  AL+++ + GF   G +
Sbjct: 156 AEAMGCQGVVIPQRRAAGVTSTVMKVAAGALEYLPVARVVNLNRALEELKAAGFWLYGAA 215

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + S K L        I L+LG+EG+GL   TQ++   +  + + G   +LN S AAA+AL
Sbjct: 216 AKSGKSLHTINLTGAIGLVLGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMAL 275

Query: 274 Y 274
           Y
Sbjct: 276 Y 276


>gi|254362632|ref|ZP_04978721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           haemolytica PHL213]
 gi|153094246|gb|EDN75117.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           haemolytica PHL213]
          Length = 247

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 122/245 (49%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A L+N   ++ ++L  K           N L RL           ++ V  Q
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQRLG--------VAIQQVNRQ 56

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
           T+D     E VHQG+     P   L    L+A+   + + LL++LD V DPHN+GA LR+
Sbjct: 57  TLDNKSQGE-VHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   D +I  K  S   +    K A GA E +P IR++NL      LQ+ H+ W    
Sbjct: 116 ADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVW---I 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + +++  + +      IAL++GAEG G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232

Query: 270 AVALY 274
            V L+
Sbjct: 233 GVCLF 237


>gi|27364705|ref|NP_760233.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
           CMCP6]
 gi|37681244|ref|NP_935853.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
           YJ016]
 gi|320155098|ref|YP_004187477.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           vulnificus MO6-24/O]
 gi|52783298|sp|Q7MH13|RLMB_VIBVY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783314|sp|Q8DCT8|RLMB_VIBVU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|27360850|gb|AAO09760.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio
           vulnificus CMCP6]
 gi|37199995|dbj|BAC95824.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|319930410|gb|ADV85274.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           vulnificus MO6-24/O]
          Length = 247

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L+    +  +    K    R D D  +P  +   +  V  Q +    
Sbjct: 3   NEFIYGIHAVRAVLDKEPERFIEAYVLKG---RQD-DRLMPILNELQMVGVSLQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+     P   L    LD +     S LL++LD V DPHN+GA LR+
Sbjct: 59  LDDKAHG--ANHQGIIARVKPAKQLNENDLDDILAKHASPLLLILDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G +
Sbjct: 117 ADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L
Sbjct: 177 GEATHDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGAVSSLNVSVASGICL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|116491407|ref|YP_810951.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|116092132|gb|ABJ57286.1| rRNA methylase [Oenococcus oeni PSU-1]
          Length = 233

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 9/188 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNI 147
           V+ V  Q +D++      HQG+AL  A      LD + N        L++LD + DPHN+
Sbjct: 38  VQEVDNQRLDELT-NHGNHQGIALSIAAYEYVPLDDILNGIKDHDPFLVILDEIEDPHNL 96

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A   DGII  KR +   + V+AK+++GA+EH+P  R+ N+ + + K+    F
Sbjct: 97  GSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNVNNTIDKLKKANF 156

Query: 208 QTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              G  +D K     +   D  +A+++G EGKG+  +T++    M  + M G +++LN S
Sbjct: 157 WIFG--TDMKGTDYTDWNADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNAS 214

Query: 267 NAAAVALY 274
            AAA+ +Y
Sbjct: 215 VAAALLIY 222


>gi|149926252|ref|ZP_01914514.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
 gi|149825070|gb|EDM84282.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
          Length = 244

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/243 (32%), Positives = 118/243 (48%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H VSA +      + ++L     K+   +   D        V       ++K  G
Sbjct: 3   ILYGFHAVSARVKTAPASVEEVLVDQHRKDKRMQQFIDKVKAAGVKVSAADSDRLEKAAG 62

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+      L     L   +D    + LL+VLD V DPHN+GA LRSA A     
Sbjct: 63  HKQ-HQGVVAFAKELVKSNDLFEIIDTHGKNTLLLVLDGVTDPHNLGACLRSADAAGVHA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  S   + V++K A GA E IP I ++NL   L+++   G   IG + ++   L 
Sbjct: 122 VVLPKDKSVGITPVVSKVACGAAETIPVITVTNLARTLEEIQDAGVWCIGTAGEATDTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
               N  IA +LGAEG G+R  T+E    +  + M G +++LNVS A++V L+ T  Q  
Sbjct: 182 DADLNGPIAWVLGAEGDGMRRLTREKCDQLVQIPMIGSVESLNVSVASSVCLFETLRQRQ 241

Query: 280 FAK 282
           F+K
Sbjct: 242 FSK 244


>gi|145297770|ref|YP_001140611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850542|gb|ABO88863.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 249

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 28/245 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100
            +YG+H VSA L     +  ++ A K        D +  HP           V++V  +T
Sbjct: 5   LIYGIHAVSALLERTPERFIEVWALKGR------DDDRLHPLLAEMESLGLKVQSVNRKT 58

Query: 101 ID-KIVGKEAVHQGL---ALETAPL----LSPTLD--AVRNSQ-LLMVLDHVNDPHNIGA 149
           +D K  G    HQG+    +E   L    L+  LD  A + +Q  L+VLD V DPHN+GA
Sbjct: 59  LDDKAEGNN--HQGIMAKVIEAPKLAEHDLASLLDNLAEQKAQPFLLVLDGVTDPHNLGA 116

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
            LRSA A     +I  +  +   ++V+ K A GA E +P I+++NL  +L+++   G   
Sbjct: 117 CLRSADAAGVHAVIVPRDKASGLTSVVRKVACGAAEVVPLIQVTNLARSLRELKDRGVWI 176

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   + Q      +AL++GAEGKG+R  T+E    +  + M G + +LNVS A 
Sbjct: 177 VGTAGEADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVAT 236

Query: 270 AVALY 274
            V L+
Sbjct: 237 GVCLF 241


>gi|330951485|gb|EGH51745.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae Cit 7]
          Length = 234

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 113/243 (46%), Gaps = 38/243 (15%)

Query: 51  LYGVHTVSAAL----------------NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +YGVH V A L                N+P  +    LA +N +              + 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVT-------------IG 53

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               + +D  V  E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+
Sbjct: 54  QAERREMDAWV--EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNL 111

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA LR+A A     +I  K  S + +  + K A GA E IP + ++NL   L+K+   G 
Sbjct: 112 GACLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGL 171

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G + +++  L Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS 
Sbjct: 172 WVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVGLPMAGSVSSLNVSG 231

Query: 268 AAA 270
            A 
Sbjct: 232 GAC 234


>gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           fusiformis ZC1]
 gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           fusiformis ZC1]
          Length = 250

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145
           V+ VP + +D++    A HQG+    A      L     A  N Q     ++LD + DPH
Sbjct: 53  VQFVPKKKVDQL--SSANHQGIVASVAAYKYAELEDLFAAAANKQEDPFFLILDELEDPH 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR S S +AV+AK+++GA+EH+P +R++NL   + ++   
Sbjct: 111 NLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTIDELKER 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  +       +      +A+I+G+EGKG+    +E    + HL M G + +LN 
Sbjct: 171 GIWIAGTDAKGSADYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNA 230

Query: 266 SNAAAVALY 274
           S AAA+ +Y
Sbjct: 231 SVAAALLMY 239


>gi|126665195|ref|ZP_01736178.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
           ELB17]
 gi|126630565|gb|EBA01180.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
           ELB17]
          Length = 266

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVG 106
           F++G H V A L     ++ Q+ + T     R+     L     V  + V  + +D  V 
Sbjct: 24  FVFGWHAVEAVLKREPERLLQVWIQTGRQDKRVKSTTELLDTLGVSWEIVHRKLLDSRVA 83

Query: 107 KEAVHQGLALETAPLLSPTLD----AVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159
              VHQG+    +     + D     + NS+    L++LD V DPHN+GA +R+A A   
Sbjct: 84  --GVHQGIVASVSESREWSEDDLLAMLANSEKPPFLLILDGVTDPHNLGACMRTADAVGV 141

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S + + V  K A GA E +P++R++NL   L+ +   G   +G + ++   
Sbjct: 142 QAVIVPKDKSATLTPVARKVACGAAETVPFVRVTNLARLLRTLQEQGVWLVGTAGEASIT 201

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +AL++GAEGKG+R  T+E    + ++ M G +++LNVS A+ V LY
Sbjct: 202 LHQADLTGPLALVMGAEGKGMRRLTREHCDQLINIPMVGDVESLNVSVASGVCLY 256


>gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ3810]
 gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ3810]
 gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
           parahaemolyticus 10329]
          Length = 247

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 119/241 (49%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L     +  +    K    R D D  +P  +   V  V  Q +    
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+     P   L    +D   A   + LL+VLD V DPHN+GA LR+
Sbjct: 59  LDDKAHG--ANHQGIIARVKPAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G +
Sbjct: 117 ADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L
Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. RS9917]
 gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. RS9917]
          Length = 504

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 100/181 (55%), Gaps = 8/181 (4%)

Query: 101 IDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           + +I G  AVHQG+AL+TA       P L     ++    LL+ LD + DPHN+GAI+RS
Sbjct: 236 LGQITGG-AVHQGIALQTAAAETLDLPTLIEGCASLGEPPLLLALDGLTDPHNLGAIVRS 294

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ +GL+
Sbjct: 295 AEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLESLKDAGYRVVGLA 354

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +    L +      + ++ G+EG GL   T+     +  + + GI  +LN S A A+ L
Sbjct: 355 EEGDLTLAEADLEGPLVVVTGSEGDGLSLLTRRHCDQLIRIPLRGITPSLNASVATALCL 414

Query: 274 Y 274
           Y
Sbjct: 415 Y 415


>gi|254801702|sp|B8ZUB0|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324
 gi|254801703|sp|Q9CCW4|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324
          Length = 309

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 11/186 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           VP   +D+I     +HQG+AL+  P        LL+   D+     LL+ LD+++DP N+
Sbjct: 118 VPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDS--PPALLVALDNISDPRNL 174

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RS  AFS  GI+  +R S S +AV  ++++GA   IP  R +NLT AL+     G 
Sbjct: 175 GAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGL 234

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + IGL  D    L+     D +A+++G+EGKGL    + +   +  + M G +++LN S 
Sbjct: 235 RVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIPMAGQVESLNASV 294

Query: 268 AAAVAL 273
           A  V L
Sbjct: 295 AVGVVL 300


>gi|75910610|ref|YP_324906.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC
           29413]
          Length = 327

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 22/243 (9%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPP 98
           E+  +YG H V +AL N  R + ++  T     RL +D            +   +  V P
Sbjct: 72  ESDIIYGRHPVLSALEN-QRGLNRIWVTP----RLRYDPRFHNLILQAKENGAVIDEVEP 126

Query: 99  QTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           + +D+I   +A HQG+A + AP        L     +V +  +++V D + DPHN+GAI+
Sbjct: 127 KRLDQIT-DQANHQGIAAQIAPYSYIEFYELIAQAKSVTDP-VIIVADGITDPHNLGAII 184

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G++  +R +   ++ + K A+GALE+ P  R+ NL+ AL+ +   GF   G
Sbjct: 185 RTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLSRALEDLKEAGFWIYG 244

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            ++   +PL        I L++G+EG+GL   TQ +   +  + + G   +LN S AA +
Sbjct: 245 TAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGM 304

Query: 272 ALY 274
           ALY
Sbjct: 305 ALY 307


>gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|227082715|ref|YP_002811266.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           BX 330286]
 gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           B33]
 gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC9]
 gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae
           MJ-1236]
 gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
           MO10]
 gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
           CIRS 101]
 gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           INDRE 91/1]
 gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
           757]
 gi|52783330|sp|Q9KNY2|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC9]
 gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           B33]
 gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           BX 330286]
 gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           MJ-1236]
 gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
           MO10]
 gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
           CIRS 101]
 gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           INDRE 91/1]
 gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
           757]
          Length = 247

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V+A L  +P+R +           +LL   N L RL           ++ +
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150
             + +D    + A HQGL     P   L    LD   A     LL+VLD V DPHN+GA 
Sbjct: 55  SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  
Sbjct: 174 GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233

Query: 271 VALY 274
           V L+
Sbjct: 234 VCLF 237


>gi|21230973|ref|NP_636890.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769023|ref|YP_243785.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992138|ref|YP_001904148.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|52783316|sp|Q8PAG5|RLMB_XANCP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21112593|gb|AAM40814.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574355|gb|AAY49765.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733898|emb|CAP52104.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 249

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 126/239 (52%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A +   L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAQGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG EG GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEGDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLF 240


>gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 316

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 100/193 (51%), Gaps = 13/193 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142
            P+   P   +D+I    AVHQGLAL+  P        L+ P L  +    L++ LD + 
Sbjct: 119 LPILETPRGELDRIT-DGAVHQGLALQVPPYEYAHPNDLIDPELPGI---PLIVALDGIT 174

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RS  AF   G++   R S   +A   K+++GA   IP  + +NLT  L+  
Sbjct: 175 DPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSAGAAARIPVAQCTNLTRTLEDY 234

Query: 203 HSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              GF  IGL  +    L + E+ N+ I +++G+EGKGL    +ET   +  + M   ++
Sbjct: 235 RKAGFFVIGLDMEGDVELPDLELANEPIVIVVGSEGKGLSRLVRETCDQIVSVPMSSAVE 294

Query: 262 ALNVSNAAAVALY 274
           +LN   A  V LY
Sbjct: 295 SLNAGIATGVTLY 307


>gi|227894574|ref|ZP_04012379.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227863733|gb|EEJ71154.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 252

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 9/193 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145
           ++TVP   +D++V +   HQGL L     E A L  L    D       L++LD + DPH
Sbjct: 54  IQTVPKNKLDRLV-EGGNHQGLVLAISSFEYADLDQLLDKFDQEEKEPFLLMLDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILRSA A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   
Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G         E   K  K  L++G EGKG+ P  ++       L M G +++LN 
Sbjct: 173 GYWVFGTDMAGVDYREWNAKG-KAVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNA 231

Query: 266 SNAAAVALYITQN 278
           S A  V LY   N
Sbjct: 232 SVATGVLLYQAYN 244


>gi|285018766|ref|YP_003376477.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283473984|emb|CBA16485.1| probable trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 248

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++ +A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSIENDADNVREVLVEAGSKNPRLQEIEENAR-RKGIEVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A         L   + A +   LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGSVRHQGVAARYAAARTWAESELEGLVAAAQGRALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S   +A + K+++GA + +P + ++NL   L+++   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSAPVNATVRKTSAGAADRLPIVAVTNLARCLRELQKQGVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L  +     +AL+LG E  GLR  T+E    +  + MPG I++LNVS AA V L+
Sbjct: 182 AETSLYAQDLRGNVALVLGGESDGLRRLTREHCDGLVRIPMPGEIESLNVSVAAGVTLF 240


>gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 418

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 137/296 (46%), Gaps = 59/296 (19%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY---------GVHTVSAALNN-- 63
           ++   +    RN+++      F+Q ++   +P+  F++         G H+  A L +  
Sbjct: 113 VQSRRFTSFSRNNQN-----DFSQSTQEIEKPKQNFVFESESNDIFWGRHSTQAILESGR 167

Query: 64  ------------PSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQTIDKIVGK 107
                        S + FQLL    AL  L     W A L H               V  
Sbjct: 168 AIHRIWCTSEIRSSPRFFQLLKDAKALGVLVEEVSW-ARLGH---------------VTT 211

Query: 108 EAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             VHQG+AL+TA   S T D         ++  S +L+ LD + DP N+GAI+RSA A  
Sbjct: 212 GGVHQGIALQTAA--SETFDLKTLIEGCQSIDESPVLIALDGLTDPQNLGAIVRSAEALG 269

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  +R S   +  +AK A+GALEH+P  R+ NL  +L+++   G+  IGL+ +  K
Sbjct: 270 AHGLILPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEELKKSGYTIIGLAGEGDK 329

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +   +  + L +G+E KGL   T+     +  + + G+  +LN S A +V LY
Sbjct: 330 TINEITFDGPLVLAIGSEEKGLSLLTRRHCDFLVKIPLRGVTTSLNASVATSVVLY 385


>gi|119947021|ref|YP_944701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Psychromonas
           ingrahamii 37]
 gi|119865625|gb|ABM05102.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas
           ingrahamii 37]
          Length = 246

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 125/242 (51%), Gaps = 25/242 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK--------NALARL-DWDANLPHPFPVKTVPPQT 100
            LYG+H+V A L     +  ++ A K        N +A+L +W         V+ +  + 
Sbjct: 6   LLYGIHSVDALLEKQPERFIEVYALKGREDERLNNIIAKLNEWG------ISVQLMNRKA 59

Query: 101 ID-KIVGKEAVHQGLA--LETAPLLSPT-LDAVRNSQ----LLMVLDHVNDPHNIGAILR 152
           +D K  G++  HQG+   ++TA +L+   LD++  S      L++LD V DPHN+GA LR
Sbjct: 60  MDDKSEGEQ--HQGIIARVKTAKVLNDNDLDSLLESLTAPPFLLILDGVTDPHNLGACLR 117

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A     +I  K  S S + V+ K A GA E +P I ++NL  A++ +   G    G 
Sbjct: 118 SADAAGVHAVIIPKDNSASLTPVVRKVACGAAESVPLIHVTNLARAMRSLQDKGVWIYGT 177

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++ + L        +AL +GAEGKGLR  T+E    +  L M G + +LNVS A  V 
Sbjct: 178 AGEATQSLYDCKLEGGMALAMGAEGKGLRRLTREHCDQLIKLPMAGAVSSLNVSVATGVC 237

Query: 273 LY 274
           L+
Sbjct: 238 LF 239


>gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
 gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
          Length = 378

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQG+ L+TA       P L      +    LLM LD + DPHN+GAI RSA A    G
Sbjct: 36  AVHQGIVLQTAAAETLDLPSLIEGCRGIGEPPLLMALDGITDPHNLGAIARSAEALGAHG 95

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   +  +AK A+GALEH+P  R+ NL  AL  +   G++ IGL+S+    LE
Sbjct: 96  LVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRALDSLKQEGYRVIGLASEGSVSLE 155

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q      + ++ G+E  GL   T++    +  + + G   +LN S A A+ LY
Sbjct: 156 QADLEGPLVIVTGSEADGLAMLTRKHCDQLVSIPLRGATPSLNASVATALLLY 208


>gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN]
 gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923]
 gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae]
 gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923]
          Length = 278

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 103/186 (55%), Gaps = 11/186 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           VP   +D+I     +HQG+AL+  P        LL+   D+     LL+ LD+++DP N+
Sbjct: 87  VPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDS--PPALLVALDNISDPRNL 143

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RS  AFS  GI+  +R S S +AV  ++++GA   IP  R +NLT AL+     G 
Sbjct: 144 GAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGL 203

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + IGL  D    L+     D +A+++G+EGKGL    + +   +  + M G +++LN S 
Sbjct: 204 RVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIPMAGQVESLNASV 263

Query: 268 AAAVAL 273
           A  V L
Sbjct: 264 AVGVVL 269


>gi|85713280|ref|ZP_01044303.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
 gi|85692898|gb|EAQ30873.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
          Length = 248

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 127/246 (51%), Gaps = 15/246 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTID 102
           + + ++G+H V + L     ++ +L  ++     ++A +   A      P + +P Q +D
Sbjct: 3   QKVTVFGLHAVRSVLTQHPDRLIELFVSRERQDASVAEVIGQAEAIGIRP-QWIPRQALD 61

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K   +   HQG+      L        S  ++  + + L +VLD+V DPHN+GA +R+A 
Sbjct: 62  K-RAEFGNHQGVVATIKALPPLNENDFSTLIEKAQGAPLFLVLDNVTDPHNLGACMRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S   +  + K A GA+++IP + ++NL  AL+ +       +G + +
Sbjct: 121 AAGATAVVVPKDKSAQITPTVRKVACGAVDNIPLVVVTNLARALRTLQDLNVWVVGTAGE 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY- 274
           + K L Q      +AL++GAEGKG+R  T+ET   +A + + G + +LNVS A+ V L+ 
Sbjct: 181 ADKSLYQIDFKGPLALVMGAEGKGMRRLTRETCDELASIPLDGSVSSLNVSVASGVCLFE 240

Query: 275 -ITQNH 279
            + Q H
Sbjct: 241 AVRQRH 246


>gi|301154986|emb|CBW14449.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 256

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 17/249 (6%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPF--PVKT 95
           K+     P +  +YG+H V++ L N+P R I   +       RL    N  +     V+ 
Sbjct: 3   KNNKQENPMSENIYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQF 62

Query: 96  VPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGA 149
           V  QT+DK    E VHQG+     E   L    LD +   + + LL+VLD V DPHN+GA
Sbjct: 63  VNRQTLDKKSNGE-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGA 121

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----W 205
            LR+A A     +I  K  S   +++  K A GA E +P IR++NL   L+ +      W
Sbjct: 122 CLRTADAAGVSAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIW 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +G + ++ + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNV
Sbjct: 182 ---VVGTAGEATETIYQSKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNV 238

Query: 266 SNAAAVALY 274
           S A  V L+
Sbjct: 239 SVATGVCLF 247


>gi|253999430|ref|YP_003051493.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986109|gb|ACT50966.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
           SIP3-4]
          Length = 249

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVK--TVPPQTIDKIVG 106
            L+G H V + L   +  + ++L  K+ + AR+    NL     V+   V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHAASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDGMAG 65

Query: 107 KEAVHQGLALETA--PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+       P+    +  +  S L      +VLD V DPHN+GA LR A A   
Sbjct: 66  ANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E IP+I ++NL   L+++   G   +G ++D+   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADAPGN 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L        +AL+LGAEG GLR  T ET  ++  + M G +++LNVS A+ + LY
Sbjct: 186 LFTTKLAGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLY 240


>gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A]
 gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL2A]
          Length = 416

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 97/175 (55%), Gaps = 11/175 (6%)

Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           AVHQG+ L+ A   S TLD         A  +S LL+ LD + DP N+GAI+RSA A   
Sbjct: 213 AVHQGIVLQIAA--SKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGA 270

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  +R S   +  +AK A+GALEH+P  R+ NL  +L+K+   G+  +GL+ +    
Sbjct: 271 QGLILPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSST 330

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L +      + +++G+E KG+   T+     +  + + G+  +LN S A ++ LY
Sbjct: 331 LSEIKFQGPLVVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLY 385


>gi|121604792|ref|YP_982121.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120593761|gb|ABM37200.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 253

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 83/141 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY  ++
Sbjct: 102 LLLVLDGVTDPHNLGACLRVADGAGAQAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 161

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   L ++       IG S D++K +        +ALILGAEG+G+R  T++T   +  
Sbjct: 162 NLARTLNELKERNIWCIGTSDDAEKTIYDVDLTGPVALILGAEGEGMRQLTRKTCDELVS 221

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LNVS A+ V LY
Sbjct: 222 IPMQGAVESLNVSVASGVCLY 242


>gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           gallicum DSM 20093]
 gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           gallicum DSM 20093]
          Length = 348

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 87/142 (61%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 189 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPIARVV 248

Query: 194 NLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+  +GL  S SK+  +   + D + ++LG+EGKGL   T+E    +A
Sbjct: 249 NLTKAIEGLKERGYYAVGLDGSGSKEVGQTGFETDPLIVVLGSEGKGLSRLTREACDCIA 308

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M  ++++LN S AA + LY
Sbjct: 309 GIPMTSMVESLNASVAAGITLY 330


>gi|332289064|ref|YP_004419916.1| 23S rRNA [Gallibacterium anatis UMN179]
 gi|330431960|gb|AEC17019.1| 23S rRNA [Gallibacterium anatis UMN179]
          Length = 245

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 11/234 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107
           +YG+H VSA L+    +  ++   K     RL    N  H     V+ +  Q +DK    
Sbjct: 5   IYGIHAVSAVLSTTPERFIEVFVLKGREDKRLQPLLNELHQLGISVQFLTRQALDKKANG 64

Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E  HQG+  +  P    T + +      +   LL+VLD V DPHN+GA LR+A A   D 
Sbjct: 65  ET-HQGIIAKVQPPKEQTENDLYALLQQKKHPLLLVLDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220
           +I  +  S   ++V  K A GA E +P IR++NL   L+ +   +    +G + ++   +
Sbjct: 124 VIIPRDKSAQLTSVARKVACGAAEVVPLIRVTNLARTLKTLQQDYNIWVVGTAGEANSSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 184 YQNKLTGALALVMGAEGDGMRRLTREHCDQLVSIPMQGSVSSLNVSVATGVCLF 237


>gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           metschnikovii CIP 69.14]
 gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           metschnikovii CIP 69.14]
          Length = 246

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQ-----------LLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H+V+A +     +I +           LL   N L RL           ++ +
Sbjct: 3   NELIYGIHSVNAVMQREPARIIEVYVLKGRQDDRLLPVLNELQRLG--------LSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150
             + +D    + A HQGL  +  P   L    LDA+ +     LL+VLD V DPHN+GA 
Sbjct: 55  GRKALDD-KAQGANHQGLIAKVKPAKALNEHDLDAILSQHEQPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDRSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   L        +A+++GAEG G+R  T++T   +  + M G + +LNVS A  
Sbjct: 174 GTAGEATHDLYHSKLTGPLAIVMGAEGDGMRRLTRDTCDDLIKIPMAGSVSSLNVSVATG 233

Query: 271 VALY 274
           + L+
Sbjct: 234 ICLF 237


>gi|332365775|gb|EGJ43532.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 233

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 8/184 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150
           P +T+ ++    AVHQG  L  A       + +       ++ LL++LD + DPHN+G+I
Sbjct: 45  PKKTLQEMT-DGAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSI 103

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A +  G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   
Sbjct: 104 LRTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIF 163

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G       P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA
Sbjct: 164 GTDMQG-TPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAA 222

Query: 271 VALY 274
           + +Y
Sbjct: 223 ILMY 226


>gi|256844498|ref|ZP_05549984.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|293381069|ref|ZP_06627090.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus 214-1]
 gi|312977948|ref|ZP_07789694.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus CTV-05]
 gi|256613576|gb|EEU18779.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|290922369|gb|EFD99350.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus 214-1]
 gi|310895255|gb|EFQ44323.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus CTV-05]
          Length = 251

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 15/196 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145
           V+ VP   +D++V     HQGL L     E A L  L    DA      L++LD + DPH
Sbjct: 54  VQDVPKNKLDRLVAG-GNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202
           N+G+ILRSA A   DGII  KR++   ++V+AK+++GA++++P  R++NL   T  L+K 
Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    +D ++   Q     K  L++G EGKG+ P  ++       L M G +++
Sbjct: 173 GYWVFGTDMAGTDYREWNAQ----GKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQS 228

Query: 263 LNVSNAAAVALYITQN 278
           LN S A  V LY   N
Sbjct: 229 LNASVATGVLLYQAYN 244


>gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL1A]
 gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL1A]
          Length = 442

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 23/217 (10%)

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           K FQLL  + A   L           V+ V    + ++    AVHQG+ L+ A   S TL
Sbjct: 209 KFFQLLKDQKASGVL-----------VEEVSWSRLGQLTNG-AVHQGIVLQIAA--SKTL 254

Query: 127 D---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           D         A  +S LL+ LD + DP N+GAI+RSA A    G+I  +R S   +  +A
Sbjct: 255 DLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVA 314

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K A+GALEH+P  R+ NL  +L+K+   G+  +GL+ +    L +      + +++G+E 
Sbjct: 315 KVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPLVVVVGSED 374

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           KG+   T+     +  + + G+  +LN S A ++ LY
Sbjct: 375 KGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLY 411


>gi|325917513|ref|ZP_08179718.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536271|gb|EGD08062.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 249

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   +DA +   L++VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVDAAQGRALVLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLF 240


>gi|227879319|ref|ZP_03997185.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
           JV-V01]
 gi|256849114|ref|ZP_05554547.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|262047595|ref|ZP_06020550.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
           MV-3A-US]
 gi|227861088|gb|EEJ68741.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
           JV-V01]
 gi|256713890|gb|EEU28878.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|260572171|gb|EEX28736.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
           MV-3A-US]
          Length = 251

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 15/196 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145
           V+ VP   +D++V     HQGL L     E A L  L    DA      L++LD + DPH
Sbjct: 54  VQDVPKNKLDRLVAG-GNHQGLVLAISSFEYADLDQLLDKYDAEGKEPFLLMLDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202
           N+G+ILRSA A   DGII  KR++   ++V+AK+++GA++++P  R++NL   T  L+K 
Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    +D ++   Q     K  L++G EGKG+ P  ++       L M G +++
Sbjct: 173 GYWVFGTDMAGTDYREWNAQ----GKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQS 228

Query: 263 LNVSNAAAVALYITQN 278
           LN S A  V LY   N
Sbjct: 229 LNASVATGVLLYQAYN 244


>gi|261867104|ref|YP_003255026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412436|gb|ACX81807.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 245

 Score =  108 bits (271), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/245 (33%), Positives = 128/245 (52%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A + +   ++ ++ A K           N + RL           V+ +  Q
Sbjct: 5   IYGIHAVKAFVTHYPERLIEVWALKGRDDQRLQPLINEIQRLG--------ISVQFLNRQ 56

Query: 100 TIDKIVGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
           T+DK    E VHQG+   + + P L+   LD +   +N+ LL+VLD V DPHN+GA LR+
Sbjct: 57  TLDKKAEGE-VHQGIIARVHSLPELNEHDLDRLLEQQNTPLLLVLDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   + +I  K  S   ++   K A GA E++P IR++NL      LQK H+ W    
Sbjct: 116 ADAAGVNAVIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVW---V 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++ + L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGETTETLYQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVAT 232

Query: 270 AVALY 274
            V L+
Sbjct: 233 GVCLF 237


>gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|254803872|sp|A0PV26|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155
 gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 310

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 105/191 (54%), Gaps = 11/191 (5%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142
            P+  VP   +D++     +HQG+AL+  P        LL+  LD      LL+ LD+++
Sbjct: 114 IPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDT--PPALLVALDNIS 170

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT AL+  
Sbjct: 171 DPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDW 230

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G + +GL +     ++    +D I +++G+EGKGL    ++T   +  + M G  ++
Sbjct: 231 ADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGPTES 290

Query: 263 LNVSNAAAVAL 273
           LN S AA V L
Sbjct: 291 LNASVAAGVVL 301


>gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
 gi|254806447|sp|B2HJ20|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
 gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
          Length = 310

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 105/191 (54%), Gaps = 11/191 (5%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142
            P+  VP   +D++     +HQG+AL+  P        LL+  LD      LL+ LD+++
Sbjct: 114 IPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDT--PPALLVALDNIS 170

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT AL+  
Sbjct: 171 DPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDW 230

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G + +GL +     ++    +D I +++G+EGKGL    ++T   +  + M G  ++
Sbjct: 231 ADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGPTES 290

Query: 263 LNVSNAAAVAL 273
           LN S AA V L
Sbjct: 291 LNASVAAGVVL 301


>gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573]
 gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603]
 gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC341]
 gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           VM223]
 gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           MB-451]
 gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC586]
 gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603]
 gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573]
 gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC341]
 gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           MB-451]
 gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           VM223]
 gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC586]
          Length = 246

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V+A L  +P+R +           +LL   N L RL           ++ +
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150
             + +D    + A HQGL     P   L    LD   A     LL+VLD V DPHN+GA 
Sbjct: 55  SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  
Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACG 233

Query: 271 VALY 274
           + L+
Sbjct: 234 ICLF 237


>gi|242238241|ref|YP_002986422.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya dadantii
           Ech703]
 gi|242130298|gb|ACS84600.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
           Ech703]
          Length = 244

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 112/234 (47%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHP-FPVKTVPPQTIDKIVG 106
            +YG+H V A L    ++  ++   K    R  L   A L      VK    Q +D+   
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFTLKGREDRRLLPLIAELEATGIAVKVANRQWLDE-KA 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG+               P L   R++  L+VLD V DPHN+GA LRSA A    
Sbjct: 63  EGAVHQGIIARVREGRQYQENDLPGLLETRDTPFLLVLDGVTDPHNLGACLRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++   L
Sbjct: 123 AVIVPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRFLQERNVWIVGTAGEADHTL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 183 YQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
 gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
          Length = 245

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N F+YG+H V A L  +P R I           +L+   N L ++           ++ +
Sbjct: 3   NEFIYGIHAVKAVLERDPVRFIEAYVLKGRQDERLMPVLNELTQIG--------VSIQQM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150
             +T+D    + A HQG+  +  P   L    LD++ +     LL++LD V DPHN+GA 
Sbjct: 55  NRKTLDD-KARGANHQGIIAKVKPAKQLNENDLDSILSQHAQPLLLILDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G    
Sbjct: 114 LRNADAAGVAAVIVPKDRSAPLTATVSKVACGAAETVPLVRVTNLARTMRSLQEQGIWIA 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q   +  +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ 
Sbjct: 174 GTAGEATHDIYQAKLDGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASG 233

Query: 271 VALY 274
           + L+
Sbjct: 234 ICLF 237


>gi|150010995|gb|ABR57153.1| SpoU rRNA methylase family protein [Staphylococcus xylosus]
          Length = 249

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 126/238 (52%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           E + + G H V  A+   +  ++ + Q    K  +  +   AN      V++VP   ID 
Sbjct: 2   EEIVIVGRHAVKEAIVSGHTINKILIQDTIKKGQINEILKKAN-SRKIIVQSVPKSKIDG 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +   ++ HQG+A   AP      DA    Q        +++LD + DPHN+G+ILR+A A
Sbjct: 61  L--SDSPHQGIAAYIAPYEYADFDAFLEKQKAQDKLSTVLILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I  KR S + +  +AK+++GA+EHIP +R++NL + ++ +   G+  +G  +++
Sbjct: 119 SGVDGVIIPKRRSVALTQTVAKASTGAIEHIPVMRVTNLANTIETLKDNGYWVVGTEANN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +      +A+++G+EG+G+    ++      ++ M G + +LN S AA++ +Y
Sbjct: 179 STDYREMDVAMPLAIVIGSEGQGMSRLVKDKCDFYINIPMVGHVNSLNASVAASLMMY 236


>gi|91775978|ref|YP_545734.1| RNA methyltransferase TrmH, group 3 [Methylobacillus flagellatus
           KT]
 gi|91709965|gb|ABE49893.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Methylobacillus
           flagellatus KT]
          Length = 251

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 10/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L+G H V + L   +  + ++L  ++ + AR+     +     V+   V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHAASVQEVLVDQDRVDARMKDLLQMAEGANVRVMHVERARLDGMAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+         P  D        ++     +VLD V DPHN+GA LR A A   
Sbjct: 66  GNARHQGVIARVVDTPIPYKDIHDILESDLKEPPFFLVLDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E +P+I ++NL   L+++   G   +G ++++   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTLRELKDAGVFIVGAAAEADAD 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     +  +AL+LGAEG GLR  TQET  S+  + M G +++LNVS A+ + LY
Sbjct: 186 LPSTNLSGPLALVLGAEGSGLRRLTQETCDSLISIPMFGSVESLNVSVASGICLY 240


>gi|325577249|ref|ZP_08147733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160831|gb|EGC72952.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 246

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 121/237 (51%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107
           +YG+H V++ L N+P R I   +       RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQFVTRQTLDKKSNG 64

Query: 108 EAVHQGL---ALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     E   L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   +++  K A GA E +P IR++NL   L+ +      W    +G + ++ 
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQTKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395]
 gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TMA 21]
 gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TM 11079-80]
 gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           bv. albensis VL426]
 gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           12129(1)]
 gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC27]
 gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           12129(1)]
 gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           bv. albensis VL426]
 gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TM 11079-80]
 gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TMA 21]
 gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC27]
 gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
           LMA3894-4]
          Length = 247

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V+A L  +P+R +           +LL   N L RL           ++ +
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150
             + +D    + A HQGL     P   L    LD   A     LL+VLD V DPHN+GA 
Sbjct: 55  SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  
Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233

Query: 271 VALY 274
           V L+
Sbjct: 234 VCLF 237


>gi|218441056|ref|YP_002379385.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7424]
 gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7424]
          Length = 310

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 19/239 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----- 104
            +YG H V AAL    R+I ++      + +L +D+               ID++     
Sbjct: 51  LIYGRHPVIAALEG-DRQINKIWV----MPKLRYDSRFHSLLTQAKANGTVIDEVDPHRL 105

Query: 105 --VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             + K A HQG+  + +P     L+       A  ++ ++++ D + DPHN+GA++R+  
Sbjct: 106 SQITKGANHQGIVAQISPYAYVELEELIEQAKARSSAPVILIADGITDPHNLGAMIRTTE 165

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++  +R +   ++ + K A+GALEH+P  R+ NL+ AL+++   GF   G  +D
Sbjct: 166 AMGAQGLVIPQRRAAGITSTVMKVAAGALEHLPVARVVNLSRALEQLKEAGFWLYGTMAD 225

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S K L        + L++G+EG+GL   TQ++  ++  + + G   +LN S A A+ALY
Sbjct: 226 SGKLLHTIDFKGAVGLVVGSEGEGLSLLTQKSCDALVSIPLAGKTPSLNASVATAIALY 284


>gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
 gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
          Length = 542

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 141/289 (48%), Gaps = 30/289 (10%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSR-HTSQPENL---------------FLYGVHT 56
           F  ++  Y   RR+  D ++  S   +SR   ++P+                  ++G H 
Sbjct: 169 FRDRNDRYGDRRRSG-DERRQPSQRSRSRFDEARPQRPDAAPEAAAATPPADDLIWGRHA 227

Query: 57  VSAAL--NNPSRKIFQLLATKNA--LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
             AAL    P  +I+     ++A    +L  DA       V+ V    + +I G  +VHQ
Sbjct: 228 TQAALEAGRPIHRIWCTAEMRSASKFLQLLRDAKASGVL-VEEVTWARLGQITGG-SVHQ 285

Query: 113 GLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G+AL+TA   +  LD++           LL+ LD V DPHN+GA++RSA A    G++  
Sbjct: 286 GIALQTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIP 345

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R S   +   AK A+GALEH+P  R+ NL  +L+K+   G++ +GL+++    L     
Sbjct: 346 QRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGLAAEGDVTLTDVDL 405

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  + L+ G+E +GL   T+     +  + + GI  +LN S A A+ +Y
Sbjct: 406 SGPMVLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVY 454


>gi|77163754|ref|YP_342279.1| RNA methyltransferase TrmH, group 3 [Nitrosococcus oceani ATCC
           19707]
 gi|76882068|gb|ABA56749.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosococcus oceani ATCC
           19707]
          Length = 274

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 22/244 (9%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQTIDKI 104
           YG+H V AAL  P+ ++  L   +         LA+L +   L      + V  + +D +
Sbjct: 31  YGLHAVRAALEQPALQVMALWLDQARIDRSLQKLAKLAFQRGLK----AQLVKREELDDL 86

Query: 105 VGKEAVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           V   A HQG+        AL    LL+  L+ +    LL++LD V DPHN+GA LR+A A
Sbjct: 87  V-PGARHQGVVARCSVQPALTEEGLLT-FLENLEAPPLLLLLDGVQDPHNLGACLRTAEA 144

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSD 215
               G++T K  +   +AV  K ASGA E IP +R++NL   ++ +   G   +G +   
Sbjct: 145 AGVHGVVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGG 204

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S   L +      + L+LGAE +GLR  TQE    +  + M G + +LNVS AA V L+ 
Sbjct: 205 SHNSLYETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFE 264

Query: 276 TQNH 279
            Q  
Sbjct: 265 AQRQ 268


>gi|238750079|ref|ZP_04611582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
           ATCC 43380]
 gi|238711623|gb|EEQ03838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
           ATCC 43380]
          Length = 246

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H+V A L+N  ++  ++   K          +A L+          V+    Q +
Sbjct: 4   IIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVVQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V +  VHQG+               P L A   +  L+VLD V DPHN+GA LRSA 
Sbjct: 59  DSQV-EGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQENNVWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|284006633|emb|CBA71894.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus
           nasoniae]
          Length = 244

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 120/240 (50%), Gaps = 23/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFP-----VKTVPPQTID 102
            +YG+H V A L     ++ Q+   K    R D    LP  H        ++    Q +D
Sbjct: 4   IIYGIHAVRALLERDPLRLKQVYILKG---RED-KRLLPIIHQLEKLGIIIQLANRQWMD 59

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVA 156
           +   + AVHQG+  E  P        LD + +   S  L++LD + DPHN+GA LRSA A
Sbjct: 60  RQT-ENAVHQGIIAEVKPGRQYQESDLDIIISQVPSPFLLILDGITDPHNLGACLRSAEA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--HSWGFQTIGLSS 214
              D +I  K  S   +A   K A GA E +P IR++NL   L+++  H W    +G + 
Sbjct: 119 AGIDAVIVPKDKSAQLNATAKKVACGAAESVPLIRVTNLARTLRQLQQHIW---IVGTAG 175

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L +      IAL++GAEG+G+R  T+E    +  + M G++ +LNVS A  V L+
Sbjct: 176 EANHTLYESKLTGAIALVMGAEGEGMRRLTREHCDELISIPMAGVVSSLNVSVATGVCLF 235


>gi|269961411|ref|ZP_06175775.1| RNA methyltransferase [Vibrio harveyi 1DA3]
 gi|269833788|gb|EEZ87883.1| RNA methyltransferase [Vibrio harveyi 1DA3]
          Length = 247

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L     +  +    K    R D D  +P  +   V  V  Q +    
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+   ++ A  L+   +D +     S LL+VLD V DPHN+GA LR+
Sbjct: 59  LDDKAHG--ANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G +
Sbjct: 117 ADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L
Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|156932411|ref|YP_001436327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156530665|gb|ABU75491.1| hypothetical protein ESA_00190 [Cronobacter sakazakii ATCC BAA-894]
          Length = 243

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + VP Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVPVQVANRQWL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A      L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKADGAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|238755910|ref|ZP_04617238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
           ATCC 29473]
 gi|238705869|gb|EEP98258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
           ATCC 29473]
          Length = 248

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 113/239 (47%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+          V+    Q +
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVVAELEATG-----LVVQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V +  VHQG+               P L A   S  L+VLD V DPHN+GA LRSA 
Sbjct: 59  DSQV-EGGVHQGIVARVREGRQYQENDLPGLLASVESPFLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A+  K ASGA E++P IR++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIRVTNLARTLRVLQENNVWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLF 236


>gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798139|gb|EDN80559.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
           17982]
          Length = 325

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 19/272 (6%)

Query: 18  SHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73
           +H  K++R  R+ ++  +     KS    +P +  + G + V+ A     P  ++F L  
Sbjct: 49  AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAARASVPIERVFVLDN 108

Query: 74  TKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALET--------APLLS 123
            K+   R++    L      PV  V  + +D +    AVHQG+A+E         + L++
Sbjct: 109 VKDD--RVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRGYEYADASDLIA 165

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            +L  +    LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +    K ++GA
Sbjct: 166 GSLQQL-GHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGA 224

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRP 242
              +P  R++NL  AL++    G+  +GL      PL    + +  + ++ GAEG GL  
Sbjct: 225 AARVPVARVTNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVVTGAEGAGLSR 284

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +ET   +  + +   +++LN + A  +ALY
Sbjct: 285 LVRETCDQIVSIPIASTVESLNAAVATGIALY 316


>gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. CB0205]
          Length = 406

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 96/173 (55%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQG+ ++ A      L   +D  R+     LLM LD + DPHN+GAI+RSA A    G
Sbjct: 134 AVHQGIVMQAAAADTLDLGTLIDGCRDLGEPPLLMALDGITDPHNLGAIVRSAEALGAHG 193

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   +  +AK A+GALEH+P  R+ NL  AL  + + G++ IGL+ +    L 
Sbjct: 194 LVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRALDSLKNEGYRVIGLAGEGSVALS 253

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +  + ++ G+EG GL   T++    +  + + G   +LN S A A+ LY
Sbjct: 254 EADLDGPLVVVTGSEGDGLSMLTRKHCDQLVRIPIRGATPSLNASVATAMVLY 306


>gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B]
 gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus
           cellulolyticus 11B]
          Length = 250

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 11/198 (5%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHN 146
           ++ V  + +D++ G    HQG+ +   P        +      R   LL+ +D V DP N
Sbjct: 54  IRVVARRELDRLTGTG--HQGVVVVVPPFTYADEREIVDRAFERAPHLLLAVDGVTDPRN 111

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+RSA AF   G++  KR +   +  + K+++GAL  +P  R++N+   L  +    
Sbjct: 112 LGAIVRSAAAFGASGVLLPKRRAAGVTPAVWKASAGALARMPLARVTNMARVLVALAERN 171

Query: 207 FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +GLS+D    ++Q   +     +AL++GAEG+GL    +E  T +A + M G +++L
Sbjct: 172 VTVVGLSADGDTTIQQAADDAGGGPVALVVGAEGRGLSRLVREKCTVVASIPMTGTVESL 231

Query: 264 NVSNAAAVALYITQNHFA 281
           NVS A  +AL++     +
Sbjct: 232 NVSVATGIALFVLSQRLS 249


>gi|88810597|ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
 gi|88792227|gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
          Length = 256

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTID 102
           +N  ++G+H+V AA+      + ++   + A +   W A          PV  V  + +D
Sbjct: 3   QNRIIHGLHSVRAAVRYDPTHVVEVWLDRQARSG-RWQALRRQLEALACPVHLVDRRQLD 61

Query: 103 KIVGKEAVHQGLALETA---PLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSAV 155
           ++   + VHQG+A+  A   P     L+A+ +      LL+VLD V DPHN+GA LR+A 
Sbjct: 62  RLTSGQ-VHQGVAIRYAGQPPRAEHELEALLSELGPDPLLLVLDQVQDPHNLGACLRTAA 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                 +IT +  +   +  + K+A+GA++HIP  +++NL   L+K+   G   IG +  
Sbjct: 121 GAGVQAVITPRDRAVGLTPTVYKAATGAVQHIPLFQVTNLARTLRKLREAGMWLIGAAEQ 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L +   +  + L++GAE  GLR  T+     +  + M G I +LNVS A  V LY
Sbjct: 181 ADVTLYEVDLSGPLVLVMGAEEAGLRRLTRACCDRLIRIPMLGAIDSLNVSVATGVVLY 239


>gi|227834034|ref|YP_002835741.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 316

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 140/279 (50%), Gaps = 26/279 (9%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64
           K  ++++  K  H AKL R  R+           RH  +   + + G + V   L+   P
Sbjct: 40  KAEDRVYHAK--HKAKLERERRN---------SGRHDKETAEMVV-GRNPVIECLHAKVP 87

Query: 65  SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121
           +  ++ +  T+N  ARL     + +    P+  V    +D++ G   +HQG+ L+  P  
Sbjct: 88  ATSLYIVQGTRND-ARLSEAVAMCNTRNIPILEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145

Query: 122 ---LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              +   +D  R++Q   + ++LD++ DP N+GA++RS  AF   G+I  +R S S +AV
Sbjct: 146 YADVHDLMDRARDAQEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAV 205

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234
             ++++G    +P  R++N+T  +Q     G+Q +GL +  +  L+      D + +++G
Sbjct: 206 AWRTSAGTAARLPVARVTNVTRTVQDFQKAGYQVVGLDAGGEHTLDTYNGGTDPVVIVIG 265

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +EGKG+    +E   ++  + M   +++LN S AA   L
Sbjct: 266 SEGKGISRLVRENCDAIMSIPMTDWVESLNASVAAGAVL 304


>gi|254435674|ref|ZP_05049181.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
           AFC27]
 gi|207088785|gb|EDZ66057.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
           AFC27]
          Length = 259

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 120/243 (49%), Gaps = 20/243 (8%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN------LPHPFPVKTVPPQTIDKIV 105
           YG+H V AAL  P+ ++  L   +   AR+D                 + V  + +D +V
Sbjct: 16  YGLHAVRAALEQPALQVMALWLDQ---ARIDRSLQKLAKLAFQRGLKAQLVKREELDDLV 72

Query: 106 GKEAVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              A HQG+        AL    LL+  L+ +    LL++LD V DPHN+GA LR+A A 
Sbjct: 73  -PGARHQGVVARCSVQPALTEEGLLT-FLENLEAPPLLLLLDGVQDPHNLGACLRTAEAA 130

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDS 216
              G++T K  +   +AV  K ASGA E IP +R++NL   ++ +   G   +G +   S
Sbjct: 131 GVHGVVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGGS 190

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L +      + L+LGAE +GLR  TQE    +  + M G + +LNVS AA V L+  
Sbjct: 191 HNSLYETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEA 250

Query: 277 QNH 279
           Q  
Sbjct: 251 QRQ 253


>gi|195978847|ref|YP_002124091.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975552|gb|ACG63078.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 248

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 7/172 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           AVHQG  L  +      LD +        + LL++LD + DPHN G+ILR+A A    G+
Sbjct: 71  AVHQGFVLRVSAFAYTELDELLELAQQEANPLLLILDGLTDPHNFGSILRTADATGVCGV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G +  +  P  +
Sbjct: 131 IIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG-TDVTGTPSYK 189

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y
Sbjct: 190 WNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMY 241


>gi|71891873|ref|YP_277602.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71795979|gb|AAZ40730.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 247

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V + L+N S +I  +     +K+   +L  D        ++    + +D I  
Sbjct: 4   LVYGIHAVKSVLDNYSHRIVSVCIIQKSKDLRLKLLIDQIKQRRISIRECSRRQLD-IQT 62

Query: 107 KEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + A+HQG+ ++  P        L   L   + + LL++LD V DPHN+GA LRSA A   
Sbjct: 63  QGALHQGIIVKIVPNDCMQENDLPNFLMQCKTTPLLVILDGVTDPHNLGACLRSADAAGA 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S   +  + K ASG++++IP+++++NL   LQ +  +    IG    S++ 
Sbjct: 123 HIVIAPRNRSACLNGTVRKVASGSVDNIPFMQVTNLIRTLQLLQKYNIWIIGTVMQSQRL 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +        +A ++G+EG G+R  TQ+    +  + M G+  +LNVS A  + L+
Sbjct: 183 IFNSKLTRPLAFVMGSEGNGIRYLTQKKCDELVTIPMLGVATSLNVSVATGICLF 237


>gi|146319556|ref|YP_001199268.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|146321750|ref|YP_001201461.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|253752559|ref|YP_003025700.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|253754385|ref|YP_003027526.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|253756319|ref|YP_003029459.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|145690362|gb|ABP90868.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|145692556|gb|ABP93061.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|251816848|emb|CAZ52495.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|251818783|emb|CAZ56623.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|251820631|emb|CAR47391.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|292559171|gb|ADE32172.1| tRNA/rRNA methyltransferase [Streptococcus suis GZ1]
 gi|319758973|gb|ADV70915.1| tRNA/rRNA methyltransferase [Streptococcus suis JS14]
          Length = 242

 Score =  108 bits (270), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 23/242 (9%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPP 98
           +N  +YGVH V  +L  N   K++    L  KN     ALA             +   P 
Sbjct: 3   QNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAA-------EKKVSISWTPK 55

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152
           +T+  +  + AVHQG  L  +      L  +       ++ L+++LD + DPHN G+ILR
Sbjct: 56  KTLSDMT-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILR 114

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  K  +   + V+AK+++GA+ H+P  R++NL+  L K+   GF   G 
Sbjct: 115 TADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGT 174

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +   P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV 
Sbjct: 175 DMNG-TPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVL 233

Query: 273 LY 274
           +Y
Sbjct: 234 MY 235


>gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046]
          Length = 287

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 10/189 (5%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q +DK+      HQG+    A      LD       A       ++LD + DPH
Sbjct: 91  VQFVPKQKVDKLAEN---HQGIVASVAAYDYAELDDLFAAAKAKSEDPFFLILDELEDPH 147

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR +   +AV+AK+++GA+EH+P +R++NL   + ++   
Sbjct: 148 NLGSIMRTADAIGAHGIIIPKRRAVGLTAVVAKASTGAIEHVPVVRVTNLAQTVDELKDR 207

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  +       +      +ALI+G+EGKG+    ++    + HL M G + +LN 
Sbjct: 208 GVWIAGTDAKGSADYRKMDATLPLALIIGSEGKGMSRLLKDKCDFLYHLPMVGHVTSLNA 267

Query: 266 SNAAAVALY 274
           S AAA+ +Y
Sbjct: 268 SVAAALLMY 276


>gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385]
          Length = 247

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V+A L  +P+R +           +LL   N L RL           ++ +
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150
             + +D    + A HQGL     P   L    LD   A     LL+VLD V DPHN+GA 
Sbjct: 55  SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQYEQPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  
Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233

Query: 271 VALY 274
           V L+
Sbjct: 234 VCLF 237


>gi|295692213|ref|YP_003600823.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
           crispatus ST1]
 gi|295030319|emb|CBL49798.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus ST1]
          Length = 251

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 107/196 (54%), Gaps = 15/196 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145
           V+ VP   +D++V     HQGL L     E A L  L    DA      L++LD + DPH
Sbjct: 54  VQDVPKNKLDRLVAG-GNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202
           N+G+ILRSA A   DGI+  KR++   ++V+AK+++GA++++P  R++NL   T  L+K 
Sbjct: 113 NLGSILRSADATGVDGIVIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    +D ++   Q     K  L++G EGKG+ P  ++       L M G +++
Sbjct: 173 GYWVFGTDMAGTDYREWNAQ----GKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQS 228

Query: 263 LNVSNAAAVALYITQN 278
           LN S A  V LY   N
Sbjct: 229 LNASVATGVLLYQAYN 244


>gi|39938738|ref|NP_950504.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
 gi|39721847|dbj|BAD04337.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
          Length = 1056

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 5/235 (2%)

Query: 45   QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            Q  N+ +YG + +  A+    RKI+QL   +     L       H    + V  + +  +
Sbjct: 818  QIINMIIYGKNPIKEAIK-AQRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFLYDL 876

Query: 105  VGKEAVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              K+  HQG+A          LD   +S   Q  ++LD +NDPHN+GAILR+  A + DG
Sbjct: 877  T-KQKTHQGVAANVCDYTFYDLDTYLDSAKFQKFLILDAINDPHNLGAILRTVEACALDG 935

Query: 162  IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
            +I +K++    ++ +AK + GALE+     ++NL   + K+       +G  S+S +   
Sbjct: 936  VIMSKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFH 995

Query: 222  QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            Q  KN  +A+I+G EG G+R   ++    +  + M G I +LNVS AAA+ +Y T
Sbjct: 996  QIPKNSSLAIIVGNEGIGIRHLLKQQCDLLVKIPMYGKINSLNVSVAAALMIYST 1050


>gi|320539669|ref|ZP_08039333.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
           str. Tucson]
 gi|320030281|gb|EFW12296.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
           str. Tucson]
          Length = 255

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +  L+          V+    Q +
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFIPKGRGDRRLQPLITELETTG-----LAVQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D+ V + AVHQG+         P        L++V ++  L+VLD V DPHN+GA LRSA
Sbjct: 59  DEKV-EGAVHQGIIARVREGRKPQENDLPALLESV-DTPFLLVLDGVTDPHNLGACLRSA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G S 
Sbjct: 117 DAAGVHAVIVPRDRSAQLNATAKKVACGASENVPLIRVTNLVRTLRLLQEMNVWVVGTSG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEGKG+R  T+E    +  + M G++ +LNVS A  + L+
Sbjct: 177 EADHTLYQSKMTGPMALVMGAEGKGMRRLTREHCDELISIPMAGMVSSLNVSVATGICLF 236


>gi|149019402|ref|ZP_01834764.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931272|gb|EDK82251.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 169

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 87/141 (61%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++LD + DPHN+G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P  R++
Sbjct: 23  LLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVT 82

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL+  L K+   GF T G   +   P  +     KIALI+G EGKG+    ++    M  
Sbjct: 83  NLSQTLDKLKDEGFWTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVDEMIT 141

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN S AAA+ +Y
Sbjct: 142 IPMNGHVQSLNASVAAAILMY 162


>gi|260599471|ref|YP_003212042.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter
           turicensis z3032]
 gi|260218648|emb|CBA33967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Cronobacter
           turicensis z3032]
          Length = 243

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L + P R  ++F L   ++   RL     L H    + VP Q  ++   
Sbjct: 4   MIYGIHAVQALLESAPERFQEVFILKGREDK--RL---LPLIHALEAQGVPVQVANRQWL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A      L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKADGAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLFQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|84393177|ref|ZP_00991941.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|84376229|gb|EAP93113.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
          Length = 246

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 48  NLFLYGVHTVSAALN-NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N F+YG+H V A L  +P+R I  + L   ++       +        ++ +  + +D+ 
Sbjct: 3   NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDE- 61

Query: 105 VGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL  +  P   L    LD   A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 62  KAQGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+
Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMSGSVSSLNVSVASGICLF 237


>gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus
           LGP32]
 gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio
           splendidus LGP32]
          Length = 246

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 48  NLFLYGVHTVSAALN-NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N F+YG+H V A L  +P+R I  + L   ++       +        ++ +  + +D+ 
Sbjct: 3   NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDE- 61

Query: 105 VGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL  +  P   L    LD   A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 62  KAQGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+
Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 237


>gi|108804991|ref|YP_644928.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
           9941]
 gi|108766234|gb|ABG05116.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
           9941]
          Length = 237

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL-ATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            +YGV  V   L +  R + ++L +T N  + RL  DA +     V+ VP   + ++ G 
Sbjct: 4   VVYGVRPVIEVLRSRRRAVHEVLDSTGNREVERLAADAGVG----VRRVPRGRVARLAGG 59

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            A HQG+A    P     L+ V   +  L+ VLD V DP N+GA+LR+A   +  G++  
Sbjct: 60  GA-HQGVAARVGPYPYAALEDVLGGENPLVAVLDGVTDPRNLGAVLRAADGAAASGVVVP 118

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  +   +    K+++GA EH+   R++NL  A+ +M   G          +   E ++ 
Sbjct: 119 KDRAAGVTPAAVKASAGASEHVRLARVTNLRRAVDRMKEEGLWVYAAEPGGENYAEADLS 178

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +AL+LG+EG+G+R   +E    +  + M G + +LNVS AAA+ LY
Sbjct: 179 G-PVALVLGSEGRGVRRLVREGCDGVLSIPMLGAVSSLNVSVAAAILLY 226


>gi|328462975|gb|EGF34783.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus MTCC
           5463]
          Length = 250

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 9/193 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145
           ++ VP   +D++V     HQGL L  +      LS  LD   +      L++LD + DPH
Sbjct: 54  IQNVPKNKLDRLV-DGGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLILDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILRSA A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   
Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G         E   K  K  L++G EGKG+ P  ++       L M G +++LN 
Sbjct: 173 GYWIFGTDMAGTDYREWNAKG-KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231

Query: 266 SNAAAVALYITQN 278
           S A  V LY   N
Sbjct: 232 SVATGVLLYQAYN 244


>gi|295425603|ref|ZP_06818290.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
 gi|295064619|gb|EFG55540.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
          Length = 251

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 105/192 (54%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPL--LSPTLDAVRNSQLLMVLDHVNDPH 145
           V+T P   +D++V     HQGL L     E A L  L    D V     L++LD + DPH
Sbjct: 55  VQTAPKNKLDRLVAG-GNHQGLVLAVSSFEYADLDQLLDEFDQVGKEPFLLMLDSIEDPH 113

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202
           N+G+ILRSA A   D II  KR++   ++V+AK+++GA++++P  R++NL   T  L+K 
Sbjct: 114 NLGSILRSADATGVDAIIIPKRHASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKNLKKR 173

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    +D +    Q   N K  L++G EGKG+ P  ++       L M G +++
Sbjct: 174 GYWIFGTDMKGTDYR----QWNANGKTVLVIGNEGKGIAPLLKKQMDQTLTLPMVGHVQS 229

Query: 263 LNVSNAAAVALY 274
           LN S A  + LY
Sbjct: 230 LNASVATGILLY 241


>gi|209921669|ref|YP_002295753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           SE11]
 gi|209914928|dbj|BAG80002.1| putative RNA methyltransferase [Escherichia coli SE11]
          Length = 243

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 113/234 (48%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++    L   A       ++    Q +D+   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDKRLLLLIHALESQGVVIQLANRQYLDE-KS 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A    
Sbjct: 63  DGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L
Sbjct: 123 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 183 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|319891496|ref|YP_004148371.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161192|gb|ADV04735.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465333|gb|ADX77486.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           pseudintermedius ED99]
          Length = 249

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 106/189 (56%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D++    A HQG+A   AP     L+     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDQLA--NAPHQGVAAFVAPYEYADLNQFLAEQAQKEGLSTVLILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DGII  KR S S +  +AK+++GA++H+P IR++NL+  +  +   
Sbjct: 108 NLGSILRTADATGVDGIIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLSQTMDVLKDK 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G  + +     Q   +  +A+++G+EG+G+  + +E       + M G + +LN 
Sbjct: 168 GYWIAGAEASNATDYRQMQADMPLAIVIGSEGQGMSRRVKEKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|33151509|ref|NP_872862.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|52783301|sp|Q7VP36|RLMB_HAEDU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33147729|gb|AAP95251.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 246

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLD--WDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H V+A L N   ++ ++   K     RL+   D        V+ V  QT+D     
Sbjct: 5   IYGIHAVNAFLANAPERLIEVFVLKGREDKRLNPLLDELQRLSISVQQVNRQTLDNKAQG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P   L    L+ +   +++ LL++LD V DPHN+GA LR+A A   D 
Sbjct: 65  E-VHQGIIARIIPQKELNEYDLNELLQHKSNPLLLILDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S + +A+  K A GA E +P IR++NL   ++++      W    +G + ++ 
Sbjct: 124 VIVPKDKSATLTAIARKVACGAAEAMPLIRVTNLARTMRELQDKHQIW---IVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +        IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 TDIYTSQLTGAIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLF 237


>gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803]
 gi|3915411|sp|P74328|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955
 gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803]
          Length = 384

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 19/239 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----- 104
            LYG H V AAL+   R++ ++  T +    + +   +       TV    +D++     
Sbjct: 125 LLYGHHAVLAALDG-DRQLNRIWITSHLRHDIRYRTKIQTAKANGTV----VDEVDNFRL 179

Query: 105 --VGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAV 155
             +   A HQG+A + AP     L   +D  ++   + +L+++D + DPHN+GAI+R+A 
Sbjct: 180 NQITHNANHQGIAAQVAPYHYWELGDLIDKAKSQSTAPVLIIIDSITDPHNLGAIIRTAE 239

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF   G++  +R     ++ + K A+GALEH P  R+ NL+ AL+ +   GF   G  + 
Sbjct: 240 AFGAQGMVLPQRRVAGITSTVMKVAAGALEHFPVARVVNLSRALETLKESGFWIYGTVAG 299

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  L Q    + + L++G+EG+GL   TQ+    +  + + G   +LN S AAA++LY
Sbjct: 300 KQTALHQADLREPMGLVIGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAAISLY 358


>gi|193216018|ref|YP_001997217.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089495|gb|ACF14770.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
           thalassium ATCC 35110]
          Length = 243

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 99/169 (58%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPLLSPTLDAV----RNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+      +    LD +    RNS QL+++LD + DPHN+GAI+R+A A + D +I  
Sbjct: 67  HQGVCALVGKVKYFELDEILARPRNSKQLIVILDGLEDPHNVGAIIRTAEAAAVDAVIIP 126

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                  +A +AK+++GAL HI   ++ NL+  ++++   GF   GL  D +K   +   
Sbjct: 127 HDSGCPINATVAKTSAGALSHIRLCKVVNLSQTIERLKKHGFWVYGLDMDGEKNYYEIDF 186

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ND  A+++G+EGKG+R   ++   ++  L + G +++LN S +AA+ LY
Sbjct: 187 NDHCAIVVGSEGKGIRQLVRKNCDALIRLPIAGNVESLNASVSAAIPLY 235


>gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
 gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
          Length = 324

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 97/175 (55%), Gaps = 9/175 (5%)

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +A HQGL L+  P    T D +         + L++ LD V DPHN+GAI RSA AF   
Sbjct: 141 KAAHQGLILQVEPYEYATADDLLAEARKGETTPLIVALDGVTDPHNLGAIARSAAAFGAH 200

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +R +   +    K+++G L  IP  ++ NLT  L++    GF   GL +D   PL
Sbjct: 201 GLLVPERRAAGVTTAAWKASAGTLARIPVAQVVNLTRTLKQFQEAGFFVSGLDADGDTPL 260

Query: 221 EQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +Q E+  +   +++G+EGKGL    +ET   +  + + G +++LN S AA VALY
Sbjct: 261 DQWELATEPSVVVVGSEGKGLSRLVRETCDVVVSIPIHG-VESLNASVAAGVALY 314


>gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           sphaericus C3-41]
 gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO
           [Lysinibacillus sphaericus C3-41]
          Length = 250

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 109/192 (56%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V+ VP + +D++    A HQG+    A      L+ +       +     ++LD + DPH
Sbjct: 53  VQFVPKKKVDQL--SSANHQGIVASVAAYKYAELEDLFAAAAKKQEDPFFLILDELEDPH 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR S S +AV+AKS++GA+EH+P +R++NL   + ++   
Sbjct: 111 NLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKSSTGAIEHVPVVRVNNLAQTVDELKER 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           G    G  +D+K  ++   K D    +A+I+G+EGKG+    +E    + HL M G + +
Sbjct: 171 GIWIAG--TDAKGSVDYR-KMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTS 227

Query: 263 LNVSNAAAVALY 274
           LN S AAA+ +Y
Sbjct: 228 LNASVAAALLMY 239


>gi|296100947|ref|YP_003611093.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055406|gb|ADF60144.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 244

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---MPLIHALEAQGVVIQLANRQFL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  ++   ++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSEGAVHQGIIARVKPGRQYQENDLPDLIAALDNPFFLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
           sp. WH 8109]
 gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
           sp. WH 8109]
          Length = 515

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAAL--NNPSRKIFQLLATKNA--LARLDWDANLPHPFPVKTVPPQTIDKIV 105
            ++G H   AAL    P  +I+     ++A    +L  DA       V+ V    + +I 
Sbjct: 188 LIWGRHATQAALEAGRPIHRIWCTAEMRSASKFLQLLRDAKASGVL-VEEVTWARLGQIT 246

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G  +VHQG+AL+TA   +  LD++           LL+ LD V DPHN+GA++RSA A  
Sbjct: 247 GG-SVHQGIALQTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVRSAEAMG 305

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +R S   +   AK A+GALEH+P  R+ NL  +L+K+   G++ +GL+++   
Sbjct: 306 AHGVVIPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGLAAEGDV 365

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L     +  + L+ G+E +GL   T+     +  + + GI  +LN S A A+ +Y
Sbjct: 366 TLTDVDLSGPMVLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVY 421


>gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium 104]
 gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|254806514|sp|A0QAB6|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574
 gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium 104]
          Length = 309

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 135/264 (51%), Gaps = 15/264 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQK-SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77
           A LR NH   K+ QS  ++ ++ T + E +   G + V   L    P+  ++  L T+ A
Sbjct: 41  AHLRPNHPAAKRAQSPPRRPAKRTEETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97

Query: 78  LARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRN 131
             RL    +        +  VP   +D++ G   +HQG+AL+  P +       L+A   
Sbjct: 98  DERLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAG 156

Query: 132 S--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           S   LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP 
Sbjct: 157 SPPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R +NLT  LQ     G + IGL +     L+    +D + +++G+EGKGL    ++   
Sbjct: 217 ARATNLTRTLQDWADRGLRVIGLDAGGDTTLDDLDGSDPLVVVVGSEGKGLSRLVRQNCD 276

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + M G  ++LN S AA V L
Sbjct: 277 EVVSIPMAGSAESLNASVAAGVVL 300


>gi|229817008|ref|ZP_04447290.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
           20098]
 gi|229785753|gb|EEP21867.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
           20098]
          Length = 333

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 180 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVCRVV 239

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ + + G+  +GL     K + E   + D + ++LG+EGKGL    +E   ++A
Sbjct: 240 NLTKAIEALKARGYYVVGLDGGGDKLVGETGFETDPLVVVLGSEGKGLSRLVREACDAIA 299

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + +   +++LN S AA ++LY   N   K
Sbjct: 300 GIPISSQVESLNASVAAGISLYAVANERRK 329


>gi|223934291|ref|ZP_03626214.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           89/1591]
 gi|330833534|ref|YP_004402359.1| TrmH family RNA methyltransferase [Streptococcus suis ST3]
 gi|223897038|gb|EEF63476.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           89/1591]
 gi|329307757|gb|AEB82173.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           ST3]
          Length = 242

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 23/241 (9%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF--QLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99
           N  +YGVH V  +L  N   K++    L  KN     ALA             +   P +
Sbjct: 4   NDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAA-------EKKVSISWTPKK 56

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
           T+  +  + AVHQG  L  +      L  +       ++ L+++LD + DPHN G+ILR+
Sbjct: 57  TLSDMT-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  K  +   + V+AK+++GA+ H+P  R++NL+  L K+   GF   G  
Sbjct: 116 ADATQVAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTD 175

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +   P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 176 MNG-TPSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLM 234

Query: 274 Y 274
           Y
Sbjct: 235 Y 235


>gi|261492875|ref|ZP_05989421.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496775|ref|ZP_05993150.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307614|gb|EEY08942.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311416|gb|EEY12573.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 247

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 121/245 (49%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A  +N   ++ ++L  K           N L RL           ++ V  Q
Sbjct: 5   IYGIHAVKAFWDNAPERLIEVLVLKGREDKRLMPLLNELQRLG--------VAIQQVNRQ 56

Query: 100 TIDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
           T+D     E VHQG+     P   L    L+A+   + + LL++LD V DPHN+GA LR+
Sbjct: 57  TLDNKSQGE-VHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   D +I  K  S   +    K A GA E +P IR++NL      LQ+ H+ W    
Sbjct: 116 ADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVW---I 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + +++  + +      IAL++GAEG G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVAT 232

Query: 270 AVALY 274
            V L+
Sbjct: 233 GVCLF 237


>gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101]
          Length = 556

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQG+ L+ A      L   +D  R+     LLM LD + DPHN+GAI+RSA A    G
Sbjct: 276 AVHQGIVLQAAAADTLDLGSLIDGCRSIGEPPLLMALDGITDPHNLGAIVRSAEALGAHG 335

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ IGL+ ++   L 
Sbjct: 336 LVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKEEGYRVIGLAGEAGVALS 395

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +  + ++ G+EG GL   T++    +  + + G   +LN S A A+ LY
Sbjct: 396 EADLDGPLVIVTGSEGSGLSMLTRKHCDQLVRIPLRGATPSLNASVATAMVLY 448


>gi|227522455|ref|ZP_03952504.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090407|gb|EEI25719.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 255

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 14/245 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTV 96
           +H  + E  F+ G H V AAL  ++P  K+F     K     +     L       +  V
Sbjct: 2   KHDQENEE-FVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLVISEV 60

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGA 149
           P Q +D++   +  HQG+ L  A     T+D +  N++        ++LD++ DPHN+G+
Sbjct: 61  PKQKLDRLSASQN-HQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGS 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  K  +   +AV+AK+++GA+E +P  R++NL   ++++   G   
Sbjct: 120 IIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWV 179

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G   +       + +   +A+I+G EGKG+ P  ++    M  + M G I++LN S AA
Sbjct: 180 FGTDIEGTDYRRWDARG-SVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAA 238

Query: 270 AVALY 274
           +V +Y
Sbjct: 239 SVLIY 243


>gi|147676634|ref|YP_001210849.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
 gi|146272731|dbj|BAF58480.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
          Length = 261

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 12/249 (4%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPF 91
           + N K +  ++ E++ + G + V  AL   +R I +LL  + AL    R  +D       
Sbjct: 5   NLNLKKKGRNRLEDI-IAGRNPVREALR-ANRPINKLLIAEGALTGSLREIYDLARERKI 62

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPH 145
           PV+ V  Q + K+V  EA HQG+    A      +D +           L++LD V+DPH
Sbjct: 63  PVQRVERQHLSKLV-PEASHQGVVALAAVREYVDVDDILAGVAPGEDPFLILLDEVHDPH 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILR+A A    GII  +R S   S  +A+S++GA+E++P  R++N+   ++ +   
Sbjct: 122 NLGAILRTADAAGAHGIIIPRRRSAPLSRTVARSSAGAVEYVPVARVANIARTIELLKGK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G   D ++       +  +AL++G EGKGL    +E    +  L M G + +LN 
Sbjct: 182 GLWVAGADPDGREVYWDARLDGPVALVIGGEGKGLGRLVKEKCDVLVRLPMSGRVNSLNA 241

Query: 266 SNAAAVALY 274
           S AAA+  Y
Sbjct: 242 SVAAALLSY 250


>gi|307546117|ref|YP_003898596.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
           2581]
 gi|307218141|emb|CBV43411.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
           2581]
          Length = 270

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGKE 108
           +YGVH V A +          +   +A  RL     L      K V  P  T+D++  + 
Sbjct: 19  VYGVHAVRALIERGEMPRELWVQDGDASERLAELVALARKGNAKVVNQPRDTLDRLA-QG 77

Query: 109 AVHQG-------LALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           AVHQG       LA E    L   L    V  + LL+VLD + D HN GA LRSA A   
Sbjct: 78  AVHQGVVAFCPPLAFEAEASLWHRLQGWSVEAAPLLLVLDGITDVHNFGACLRSADAAGA 137

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  K  +   +A + K A GA E +P  R++NL  +L +M   G    G + +++  
Sbjct: 138 HGVVVPKDRAAPLNATVRKVACGAAESVPVYRVTNLARSLARMKELGVWVTGTAGEAEAS 197

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +         AL++GAEGKG+R  T+E    +  L M G + +LNVS A  + L+
Sbjct: 198 VYDADFTGATALVMGAEGKGMRRLTREACDGLVKLPMAGQVASLNVSVATGICLF 252


>gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           ATCC 14018]
          Length = 331

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NL  A+Q +   G+  IGL     K + E   + D + ++LG+EGKG+   T+E   ++A
Sbjct: 236 NLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA ++LY   N
Sbjct: 296 GIPISSAVESLNASVAAGISLYAVAN 321


>gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 247

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V+A L  +P+R +           +LL   N L RL           ++ +
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150
             + +D    + A HQGL     P   L    LD +       LL+VLD V DPHN+GA 
Sbjct: 55  SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEHPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  
Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233

Query: 271 VALY 274
           + L+
Sbjct: 234 ICLF 237


>gi|289551668|ref|YP_003472572.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           lugdunensis HKU09-01]
 gi|315659128|ref|ZP_07911993.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289181199|gb|ADC88444.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           lugdunensis HKU09-01]
 gi|315495852|gb|EFU84182.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 248

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 106/189 (56%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +   +A HQG+A   AP      +     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDHM--SDAPHQGVAALIAPYEYADFNHFIKMQQQKESLSTVIILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DGII  KR S + + ++AK+++GA++HIP +R++NL+  +  + + 
Sbjct: 108 NLGSILRTADATGVDGIIIPKRRSVALTQIVAKASTGAIQHIPVMRVTNLSQTIDDLKAH 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF  +G  +D+         +  +A+++G+EG+G+    ++       + M G + +LN 
Sbjct: 168 GFWIVGTEADNATDYRDMAADMSLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA + +Y
Sbjct: 228 SVAAGLMMY 236


>gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 313

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 158 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 217

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NL  A+Q +   G+  IGL     K + E   + D + ++LG+EGKG+   T+E   ++A
Sbjct: 218 NLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 277

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA ++LY   N
Sbjct: 278 GIPISSAVESLNASVAAGISLYAVAN 303


>gi|332160030|ref|YP_004296607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607412|emb|CBY28910.1| 23s rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664260|gb|ADZ40904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862086|emb|CBX72252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           enterocolitica W22703]
          Length = 246

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H+V A L+N  ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V +  VHQG+               P L     + LL+VLD V DPHN+GA LRSA 
Sbjct: 59  DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVETPLLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 324

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 102/185 (55%), Gaps = 8/185 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           VP   +D++     +HQGLAL+  P        L+    +     LL+ LD+++DP N+G
Sbjct: 132 VPRTDLDRMS-SNGLHQGLALQVPPYRYAHPDDLAERARSSAEPALLVALDNISDPRNLG 190

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+   + G Q
Sbjct: 191 AVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWANQGMQ 250

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +     L++    D   +++G+EGKGL    +ET  S+  + M G +++LN S A
Sbjct: 251 IVGLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLVRETCDSVLSIPMAGPVESLNASVA 310

Query: 269 AAVAL 273
           A V L
Sbjct: 311 AGVVL 315


>gi|82546579|ref|YP_410526.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii
           Sb227]
 gi|81247990|gb|ABB68698.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 243

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 332

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NL  A+Q +   G+  IGL     K + E   + D + ++LG+EGKG+   T+E   ++A
Sbjct: 236 NLNKAIQSLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA ++LY   N
Sbjct: 296 GIPISSAVESLNASVAAGISLYAVAN 321


>gi|290890983|ref|ZP_06554047.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
 gi|290479382|gb|EFD88042.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
          Length = 233

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 106/188 (56%), Gaps = 9/188 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNI 147
           V+ V  Q +D++      HQG+A+  A      LD + N        L++LD + DPHN+
Sbjct: 38  VQEVDNQRLDELT-NHGNHQGIAISIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNL 96

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A   DGII  KR +   + V+AK+++GA+E++P  R+ N+ + + K+    F
Sbjct: 97  GSILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEYVPVARVVNINNTIDKLKKANF 156

Query: 208 QTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              G  +D K     +   D  +A+++G EGKG+  +T++    M  + M G +++LN S
Sbjct: 157 WIFG--TDMKGADYNDWNADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMVGHVQSLNAS 214

Query: 267 NAAAVALY 274
            AAA+ +Y
Sbjct: 215 VAAALLIY 222


>gi|91227443|ref|ZP_01261807.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269964501|ref|ZP_06178742.1| RNA methyltransferase [Vibrio alginolyticus 40B]
 gi|91188593|gb|EAS74884.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269830839|gb|EEZ85057.1| RNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 247

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 18/240 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQT 100
           N F+YG+H V A L     +  +    K    R D D  +P           ++ +  +T
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58

Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           +D    + A HQG+     P   L    +D   A   S LL+VLD V DPHN+GA LR+A
Sbjct: 59  LDD-KARGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNA 117

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + 
Sbjct: 118 DAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAG 177

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+
Sbjct: 178 EATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 237


>gi|283783774|ref|YP_003374528.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           409-05]
 gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           409-05]
          Length = 331

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NL  A+Q +   G+  IGL     K + E   + D + ++LG+EGKG+   T+E   ++A
Sbjct: 236 NLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA ++LY   N
Sbjct: 296 GIPISSAVESLNASVAAGISLYAVAN 321


>gi|227513728|ref|ZP_03943777.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
           ATCC 11577]
 gi|227083047|gb|EEI18359.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
           ATCC 11577]
          Length = 255

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 14/245 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTV 96
           +H  + E  F+ G H V AAL  ++P  K+F     K     +     L       +  V
Sbjct: 2   KHDQENEE-FVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLVISEV 60

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGA 149
           P Q +D++   +  HQG+ L  A     T+D +  N++        ++LD++ DPHN+G+
Sbjct: 61  PKQKLDRLSAGQN-HQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGS 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  K  +   +AV+AK+++GA+E +P  R++NL   ++++   G   
Sbjct: 120 IIRTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWV 179

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G   +       + +   +A+I+G EGKG+ P  ++    M  + M G I++LN S AA
Sbjct: 180 FGTDIEGTDYRRWDARG-SVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAA 238

Query: 270 AVALY 274
           +V +Y
Sbjct: 239 SVLIY 243


>gi|159029966|emb|CAO90345.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 288

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 106/181 (58%), Gaps = 8/181 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153
           +D+I  K A HQG+A + +P     L+  ++  +      ++++ + + DPHN+GAI+R+
Sbjct: 97  LDQITNK-ANHQGIAAQMSPYDYIELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRT 155

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A  C G++  +R +   ++ + K A+GALE++P  R+ NL  AL+++ + GF   G +
Sbjct: 156 AEAMGCQGVVIPQRRAAGVTSTVMKVAAGALEYLPVARVVNLNRALEELKAAGFWLYGTA 215

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + + K L        I L++G+EG+GL   TQ++   +  + + G   +LN S AAA+AL
Sbjct: 216 AKTGKSLHTINLTGAIGLVVGSEGEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMAL 275

Query: 274 Y 274
           Y
Sbjct: 276 Y 276


>gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix
           DSM 17093]
          Length = 241

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 12/191 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQ--LLMVLDHVNDP 144
           ++ VP   +D+ + K   HQG+  E  P LS      P   A R  +  LL++LD + DP
Sbjct: 46  LERVPRTQLDQAL-KTTRHQGVVAEL-PELSYADPEAPFTRAARRGEKPLLVLLDGITDP 103

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN GAI+RSA      G++T +R S   SAV+AK ++GA  H+P +++ NL   ++ + +
Sbjct: 104 HNYGAIIRSAEVLGAHGVVTEERRSAPLSAVVAKVSAGASSHLPLVQVKNLPRYMEALKA 163

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G    G S D+   L Q++  D+  AL++GAEG G+R   +ET   +  + M G + +L
Sbjct: 164 RGVWLYGASGDAAA-LPQQLDWDRPAALVIGAEGAGMRRLVRETCDELVAIPMRGQVASL 222

Query: 264 NVSNAAAVALY 274
           N S AA + LY
Sbjct: 223 NASVAAGILLY 233


>gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81414895|sp|Q743W2|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479
 gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 309

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 135/264 (51%), Gaps = 15/264 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQK-SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77
           A LR NH   K+ QS  ++ ++ T + E +   G + V   L    P+  ++  L T+ A
Sbjct: 41  AHLRPNHPAAKRAQSPPRRPAKRTEETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97

Query: 78  LARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRN 131
             RL    +        +  VP   +D++ G   +HQG+AL+  P +       L+A   
Sbjct: 98  DERLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAG 156

Query: 132 S--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           S   LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP 
Sbjct: 157 SLPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R +NLT  LQ     G + IGL +     L+    +D + +++G+EGKGL    ++   
Sbjct: 217 ARATNLTRTLQDWADRGLRVIGLDAGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCD 276

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + M G  ++LN S AA V L
Sbjct: 277 EVVSIPMAGSAESLNASVAAGVVL 300


>gi|331007603|ref|ZP_08330749.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC1989]
 gi|330418581|gb|EGG93101.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC1989]
          Length = 251

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 125/240 (52%), Gaps = 18/240 (7%)

Query: 50  FLYGVHTVSAALNNPSRKI--FQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIV 105
            +YG+H V A ++   ++I    LL  +N   RL    ++       V+TV  + +D +V
Sbjct: 7   IVYGLHAVQALVDGSPQRIQTLWLLKGRND-QRLQSIRSVAEKSRITVRTVAREKLDGMV 65

Query: 106 GKEAVHQGLALETAPL--------LSPTLDAVRNSQLL---MVLDHVNDPHNIGAILRSA 154
             E  HQG+      +        L   L  ++ S ++   +VLD V DPHN+GA LRSA
Sbjct: 66  --EGNHQGVIASVVNVTEVYDEDYLKSRLPKMKESGVIPFILVLDGVTDPHNLGACLRSA 123

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  S S +  + K A GA E +P +R++NL+  L+ + S G   +G + 
Sbjct: 124 EAAGVQFVIVPKDNSASLTPTVVKVACGAAEVLPLVRVTNLSRTLEWLQSQGVWLVGAAG 183

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++++   Q      +A+++GAEGKGLR  T+E   S+  + M G + +LNVS A+ + L+
Sbjct: 184 EAEQDHYQMNLTGPLAIVMGAEGKGLRRLTRERCDSLIRIPMMGEVSSLNVSVASGICLF 243


>gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           CT 5369-93]
 gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           CT 5369-93]
          Length = 247

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V+A L  +P+R +           +LL   N L RL           ++ +
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150
             + +D    + A HQG+     P   L    LD   A     LL+VLD V DPHN+GA 
Sbjct: 55  SRKALDD-KAEGANHQGVIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  
Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACG 233

Query: 271 VALY 274
           V L+
Sbjct: 234 VCLF 237


>gi|330828261|ref|YP_004391213.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328803397|gb|AEB48596.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas veronii
           B565]
          Length = 249

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 123/245 (50%), Gaps = 28/245 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100
            +YG+H V+A L     +  ++ A K        D +   P           V++V  +T
Sbjct: 5   LIYGIHAVTALLERTPERFIEVWALKGR------DDDRLQPLLTELESLGLKVQSVNRKT 58

Query: 101 ID-KIVGKEAVHQGLA--LETAPLLSP-----TLD--AVRNSQ-LLMVLDHVNDPHNIGA 149
           +D K  G    HQG+   ++ AP L+       LD  A + SQ  L+VLD V DPHN+GA
Sbjct: 59  LDDKAEGNN--HQGIMARVKEAPKLAEHDLASLLDELAAQQSQPFLLVLDGVTDPHNLGA 116

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
            LRSA A     +I  +  +   + ++ K A GA E +P I+++NL   L+++   G   
Sbjct: 117 CLRSADAAGAHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARTLRELQERGVWI 176

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   L Q      +AL++GAEGKG+R  T+E    +  + M G + +LNVS A 
Sbjct: 177 VGTAGEADHDLYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVAT 236

Query: 270 AVALY 274
            V L+
Sbjct: 237 GVCLF 241


>gi|295694816|ref|YP_003588054.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
           2912]
 gi|295410418|gb|ADG04910.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
           2912]
          Length = 268

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+  + AP     LD         R   L ++LD + DPHN+G+ILR+A A + DG++
Sbjct: 89  HQGVMADVAPFAYADLDECLRAAKLHRRPGLFVLLDGIEDPHNLGSILRTAEACAVDGVV 148

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR + + +  + K+++GA E +P IR+ NL   +  +   G++ +G  ++ +      
Sbjct: 149 VPKRRAAAVNETVVKASAGAAEFVPVIRVGNLGQTILALKRSGYRVVGADTEGECDYTDV 208

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 AL++G EGKGL    +E    + H+ M G + +LN   AA V LY
Sbjct: 209 DYRVPTALVIGGEGKGLGRLVRERCDEVVHIPMAGRVNSLNAGVAAGVLLY 259


>gi|152991818|ref|YP_001357539.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151423679|dbj|BAF71182.1| RNA methyltransferase, TrmH family [Sulfurovum sp. NBC37-1]
          Length = 234

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 95/166 (57%), Gaps = 6/166 (3%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQGL LE + L  P+L  V+    L++LD + D  NIGAI+RSA A   D +I T     
Sbjct: 66  HQGLLLEISELEQPSLSDVKREDFLVILDGLTDVGNIGAIVRSAYALGADAVIATGVKQL 125

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDK 228
           +  A+ A+++SGAL  +P++ I N+ D   ++H  GF+  G  +  D+ + +E E K   
Sbjct: 126 NFEAI-ARTSSGALLDMPFLLIPNILDVCNELHQVGFKLYGAAMEGDAVQLMEFERKR-- 182

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ALILG+EGKGL  K Q     +  + M     +LNVS AAA+ ++
Sbjct: 183 -ALILGSEGKGLSKKAQGKIDHLISIEMKHAFDSLNVSAAAAILIH 227


>gi|320187058|gb|EFW61769.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella flexneri CDC
           796-83]
 gi|332087040|gb|EGI92174.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 3594-74]
          Length = 240

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 1   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 55

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 56  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 115

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 116 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEA 175

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 176 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 233


>gi|242372749|ref|ZP_04818323.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
 gi|242349522|gb|EES41123.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
          Length = 255

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D    SQ        +M+LD + DPH
Sbjct: 56  VQTVPKSKLDFL--SNAPHQGVAALVAPYEYADFDQFLQSQKDKDGFSTVMILDGLEDPH 113

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   
Sbjct: 114 NLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDN 173

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G ++++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 174 GFWVAGTAANNATDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 233

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 234 SVAASLMMY 242


>gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
 gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
          Length = 360

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 205 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVV 264

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NL  A+Q +   G+  IGL     K + E   + D + ++LG+EGKG+   T+E   ++A
Sbjct: 265 NLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIA 324

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA ++LY   N
Sbjct: 325 GIPISSAVESLNASVAAGISLYAVAN 350


>gi|148828043|ref|YP_001292796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae PittGG]
 gi|148719285|gb|ABR00413.1| hypothetical protein CGSHiGG_07820 [Haemophilus influenzae PittGG]
          Length = 246

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A  L+   LD +   + + L++VLD V DPHN+GA LR+A A   + 
Sbjct: 65  E-VHQGIIARVQAAKELNENDLDEILSNKQNPLVLVLDGVTDPHNLGACLRTADAAGAEA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   ++++ K A GA E +P IR++NL+  L+ +      W    +G + ++ 
Sbjct: 124 VIVPKDKSAQLTSIVRKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|157368686|ref|YP_001476675.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Serratia
           proteamaculans 568]
 gi|157320450|gb|ABV39547.1| RNA methyltransferase, TrmH family, group 3 [Serratia
           proteamaculans 568]
          Length = 243

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 28/243 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L+N  ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATG-----IVIQVANRQWL 58

Query: 102 DKIVGKEAVHQGLALET----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           D+ V + AVHQG+               P L  ++D    +  L+VLD V DPHN+GA L
Sbjct: 59  DEKV-EGAVHQGIIARVREGRQYQENDLPALLESVD----TPFLLVLDGVTDPHNLGACL 113

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A     +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G
Sbjct: 114 RSADAAGVHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVG 173

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  +
Sbjct: 174 TAGEADHTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGI 233

Query: 272 ALY 274
            L+
Sbjct: 234 CLF 236


>gi|254230075|ref|ZP_04923473.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
 gi|262393043|ref|YP_003284897.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           Ex25]
 gi|151937409|gb|EDN56269.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
 gi|262336637|gb|ACY50432.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           Ex25]
          Length = 248

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 18/240 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQT 100
           N F+YG+H V A L     +  +    K    R D D  +P           ++ +  +T
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58

Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSA 154
           +D    + A HQG+     P   L    +D   A   S LL+VLD V DPHN+GA LR+A
Sbjct: 59  LDD-KARGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNA 117

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + 
Sbjct: 118 DAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAG 177

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+
Sbjct: 178 EATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 237


>gi|117923731|ref|YP_864348.1| RNA methyltransferase [Magnetococcus sp. MC-1]
 gi|117607487|gb|ABK42942.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Magnetococcus sp. MC-1]
          Length = 246

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 11/195 (5%)

Query: 91  FPVKTVPPQTIDKI----VGKEAVHQGLALETAPLLSPT----LDAVRNSQ--LLMVLDH 140
           F  + VP Q  ++     +     HQG+    AP  + +    LD V  ++  LL++LD 
Sbjct: 44  FRARGVPIQFCERTAMDRMADGGAHQGVIARCAPREAMSWDDLLDVVEKAKQPLLVILDG 103

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DPHN+GAI+RSA AF    +I  K  +   +A   K+++GA E +  IR++NL  A++
Sbjct: 104 VEDPHNLGAIMRSAEAFGALAVILPKDRTAPLNAGAIKASAGAAERLDLIRVTNLARAIE 163

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           ++       IGL+ ++  PL   +     +AL++G EG GLR  T+E    +A + M G 
Sbjct: 164 QLQQRNVWVIGLAGEAGAPLIGTLDCKGPLALVMGNEGSGLRRLTRERCDQLAAIPMGGG 223

Query: 260 IKALNVSNAAAVALY 274
           + +LNVS A  VALY
Sbjct: 224 VGSLNVSVATGVALY 238


>gi|260102409|ref|ZP_05752646.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|260083777|gb|EEW67897.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|323465877|gb|ADX69564.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           helveticus H10]
          Length = 250

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 9/193 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145
           ++ VP   +D++V     HQGL L  +      LS  LD   +      L++LD + DPH
Sbjct: 54  IQNVPKNKLDRLV-DGGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILRSA A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   
Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G         E   K  K  L++G EGKG+ P  ++       L M G +++LN 
Sbjct: 173 GYWIFGTDMAGTDYREWNAKG-KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231

Query: 266 SNAAAVALYITQN 278
           S A  V LY   N
Sbjct: 232 SVATGVLLYQAYN 244


>gi|161506928|ref|YP_001576882.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
           4571]
 gi|160347917|gb|ABX26591.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
           4571]
          Length = 250

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 9/193 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145
           ++ VP   +D++V     HQGL L  +      LS  LD   +      L++LD + DPH
Sbjct: 54  IQNVPKNKLDRLV-DGGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILRSA A   DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   
Sbjct: 113 NLGSILRSADATGVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G         E   K  K  L++G EGKG+ P  ++       L M G +++LN 
Sbjct: 173 GYWIFGTDMAGTDYREWNAKG-KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231

Query: 266 SNAAAVALYITQN 278
           S A  V LY   N
Sbjct: 232 SVATGVLLYQAYN 244


>gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 316

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 138/279 (49%), Gaps = 26/279 (9%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64
           K  ++++  K  H AKL R  R+           RH  +   + + G + V   L+   P
Sbjct: 40  KAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVIECLHAKVP 87

Query: 65  SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121
           +  ++    T+N   RL    ++ +    P+  V    +D++ G   +HQG+ L+  P  
Sbjct: 88  ATTLYIAAGTRND-KRLSEAVSMCNTRNIPIIEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145

Query: 122 LSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            +   D + N+       + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +AV
Sbjct: 146 YAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234
             ++++G    +P  R +N+T  +++    G+Q +GL +     L+  E   D + +++G
Sbjct: 206 AWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPVVIVIG 265

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +EGKG+     ET   +  + M G +++LN S AA   L
Sbjct: 266 SEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVL 304


>gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
 gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
 gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1]
 gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169]
 gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1]
 gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1]
 gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1]
 gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8]
 gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7]
 gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72]
 gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1]
 gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E]
          Length = 290

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 37/290 (12%)

Query: 6   KKKSEKI--FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           KK+S+K    S K S   KL + H   K            ++P+N + YG+H VS  +  
Sbjct: 2   KKRSQKTDNQSFKSSSKEKLNKPHHQAKP-----------AKPKNPYFYGIHAVSMLIKR 50

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVP----------PQTIDKIVGKEAVHQG 113
              ++  L        R D   +  H   V++             + + ++ G +  HQG
Sbjct: 51  RPEEVLGLFIQ----LRDDGQMSSEHQLIVQSAKHFGISIQNAHRERLTELCGSQQ-HQG 105

Query: 114 LAL--ETAPLLSPT-LD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           +     TAP+   T LD   +++  L +VLD + D HN+GA LR+A A   D +I  +  
Sbjct: 106 VVALARTAPMADETILDNLLMQDDVLFLVLDQITDAHNLGACLRTACAMGVDAVILPRHQ 165

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKND 227
           S   +  +AK + GA E IP I ++NL   L+KM   G    G + D S KP  +     
Sbjct: 166 SAPITPTVAKVSVGASEVIPVISVTNLARTLEKMKKSGVFIFGTALDKSAKPAFECDFGG 225

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALNVSNAAAVALY 274
           K+A+I+G+EG G+R  TQ    ++ ++ M  ++   ++LNVS A  + LY
Sbjct: 226 KVAIIMGSEGDGMRRLTQTMCDTLVYIPMAEVLDRPQSLNVSVATGMVLY 275


>gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
 gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
          Length = 324

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 129/248 (52%), Gaps = 20/248 (8%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------P 92
           +++ + +N  +YG + V +AL +  R + +L  T    +RL +D    H           
Sbjct: 59  KNSEEQDNDLIYGRYPVLSALES-HRNLNRLWIT----SRLRYDPRFHHLVLQAKDNGTV 113

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHN 146
           +  V P+ +D+I    A HQG+A + AP     L D +  +Q     +++V D + DPHN
Sbjct: 114 IDEVDPKRLDQITNG-ANHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVADGITDPHN 172

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+R+A A    G++  +R +   ++ + K A+GALE+    R+ NL+ AL+++   G
Sbjct: 173 LGAIIRTAEAIGAQGLVIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESG 232

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G ++   +PL          L++G+EG+GL   TQ++   +  + + G   +LN S
Sbjct: 233 FWIYGTAATGSEPLHSVRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNAS 292

Query: 267 NAAAVALY 274
            A  +ALY
Sbjct: 293 VATGMALY 300


>gi|307132421|ref|YP_003884437.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
 gi|306529950|gb|ADM99880.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
          Length = 244

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTIDK 103
            +YG+H V A L    ++  ++   K    R       + +AN      V+    Q +D 
Sbjct: 4   IIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEAN---GIAVQVANRQWLDD 60

Query: 104 IVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            V + AVHQG+               P L A  ++  L+VLD V DPHN+GA LRSA A 
Sbjct: 61  KV-EGAVHQGIVARVKEGRQYQENDLPGLLASLDTPFLLVLDGVTDPHNLGACLRSADAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++ 
Sbjct: 120 GVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNVWIVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 180 HTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           matruchotii ATCC 14266]
          Length = 320

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 22/267 (8%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75
           +H  KL R  RD         + RH        + G + V   L+   P+  ++    T+
Sbjct: 48  AHKRKLERQRRD---------QGRHDRSASTELVVGRNPVIECLHARVPATALYIAQGTR 98

Query: 76  NALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTL 126
           N   RL     L H    P+  VP   +D + G   +HQG+ L+  P        L  T+
Sbjct: 99  ND-DRLTEAVQLAHSRSIPLIEVPRIELDSMTGN-GLHQGVGLQIPPFEYADVFDLIGTV 156

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
              +   +++VLD++ DP N+GA++RS  AF   G++  +R S S +AV  ++++G    
Sbjct: 157 ADSKEQGMIVVLDNITDPRNLGAVIRSTAAFGGQGVVIPERRSASVTAVAWRTSAGTAAR 216

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  + +N+T  L++    G+Q +GL +      +       + +++G+EGKGL    +E
Sbjct: 217 LPVAKATNITRTLKEFQQNGYQVVGLDAGGDTTYDSYDGTGPVVIVVGSEGKGLSRLVRE 276

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
           T   +  +     +++LN S AA V L
Sbjct: 277 TCDVLVSVPTTSWVESLNASVAAGVVL 303


>gi|311029029|ref|ZP_07707119.1| 23S rRNA methyltransferase [Bacillus sp. m3-13]
          Length = 249

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145
           V+ VP + ID++V  E  HQG+    A      LD +      RN     ++LD + DPH
Sbjct: 52  VQFVPRKKIDQMV--EGNHQGVVASVAAYDYAELDDLYKAAEQRNEDPFFLILDEIEDPH 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR +   +A +AKS++GA+EHIP +R++NL   + ++   
Sbjct: 110 NLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKSSTGAIEHIPVVRVTNLARTVDELKER 169

Query: 206 GFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           G    G  +D+K  ++   K D    + LI+G+EGKG+    +E    +  L M G + +
Sbjct: 170 GLWIFG--TDAKGTVDY-TKMDGSLPLGLIIGSEGKGMARLLKEKCDFLVSLPMVGKVTS 226

Query: 263 LNVSNAAAVALY 274
           LN S AA++ +Y
Sbjct: 227 LNASVAASLLMY 238


>gi|262275145|ref|ZP_06052956.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
           hollisae CIP 101886]
 gi|262221708|gb|EEY73022.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
           hollisae CIP 101886]
          Length = 245

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 28/245 (11%)

Query: 48  NLFLYGVHTVSAALN-NPSR--KIF--------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V A L+ +PSR  ++F        ++L   N L+RL           ++ +
Sbjct: 3   NEMIYGIHAVKAVLDSDPSRFIEVFVLKGRQDERVLPVLNELSRLG--------VTLQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             + +D    K A HQGL     P        L   LD   N  LL+VLD V DPHN+GA
Sbjct: 55  SRKALDD-KAKGASHQGLIARVKPGRQYNENDLDAILDGKENP-LLLVLDGVTDPHNLGA 112

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
            LR+A A     +I  K  S   +A   K A GA E +P +R++NL   ++ +   G   
Sbjct: 113 CLRNADAAGVCAVIVPKDKSAQLNATARKVAVGAAEVVPLVRVTNLARTMRALQERGIWF 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++   +        +A+++GAEG G+R  T+ET   +  + M G + +LNVS A 
Sbjct: 173 VGTAGEATHDVYDAKLTGPLAIVMGAEGDGMRRLTRETCDDLISIPMAGSVSSLNVSVAT 232

Query: 270 AVALY 274
            + L+
Sbjct: 233 GICLF 237


>gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 333

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+ ++GL       + E   + D + ++LG+EG GL    +ET  S+A
Sbjct: 236 NLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRETCDSIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M  ++++LN S AA + LY
Sbjct: 296 GIPMSNMVESLNASVAAGITLY 317


>gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
           16992]
          Length = 333

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+ ++GL       + E   + D + ++LG+EG GL    +ET  S+A
Sbjct: 236 NLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRETCDSIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M  ++++LN S AA + LY
Sbjct: 296 GIPMSNMVESLNASVAAGITLY 317


>gi|304315921|ref|YP_003851066.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777423|gb|ADL67982.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 248

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 12/239 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTID 102
           + EN+ +YG + V  A+N   R+I ++  +KNA   +     A       V T    T+D
Sbjct: 3   ENENI-IYGRNPVLEAIN-SGREIEKIYVSKNAKGNISKIIKAARDKNIIVSTTDNGTLD 60

Query: 103 KIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAV 155
           K+      HQG+A L +        D +  ++       +++LD + D HN+GAI+R+A 
Sbjct: 61  KL-SNYGNHQGIAALCSLYKYYEVEDILEYAEKRGEKPFILLLDGITDTHNLGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AFS  GII  KR S   ++ + K+++GA E+I  +++SN+ +A+  +   G   +G S D
Sbjct: 120 AFSAHGIIIPKRRSAVVNSTVVKTSAGATEYIKIVKVSNINNAINNLKKQGVWIVGSSLD 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +       +A+++G+EGKG+   TQ+    +A + M G I +LN S AA++ +Y
Sbjct: 180 ADVDFQNVDYTGPVAIVIGSEGKGMSELTQKNCDYIAKIPMRGNINSLNASVAASIFMY 238


>gi|311693514|gb|ADP96387.1| RNA methyltransferase, TrmH family, group 3 [marine bacterium HP15]
          Length = 245

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVG 106
           F++G H V A L     +  Q+ + T     R+    +      VK   V  + +D+ V 
Sbjct: 5   FVFGWHAVEAVLKREPERFQQVWIQTGRQDKRVKSITDTLDGLGVKWKVVHRKELDERV- 63

Query: 107 KEAVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              VHQG+          T   L   L A      L+VLD V DPHN+GA +R+A A   
Sbjct: 64  -SGVHQGVVAAVSESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S S + V  K A GA E +P++R++NL   L+ +   G   IG + ++   
Sbjct: 123 QAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRSLQDQGVWLIGTAGEADAT 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +AL++GAEGKG+R  T+E    + ++ M G + +LNVS A  V LY
Sbjct: 183 LYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLY 237


>gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301]
 gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp.
           longum F8]
 gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. longum JDM301]
 gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
          Length = 330

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 177 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 236

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT AL+ +   G+  +GL     K + E   ++D + ++LG+EG GL    +ET  ++A
Sbjct: 237 NLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIA 296

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA ++LY   N
Sbjct: 297 GIPISSSVESLNASVAAGISLYAVSN 322


>gi|268592873|ref|ZP_06127094.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
           DSM 1131]
 gi|291311662|gb|EFE52115.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
           DSM 1131]
          Length = 249

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105
            +YG+H V A L    ++I ++   K    R      L H      V  Q  ++      
Sbjct: 4   MIYGIHAVKALLERSPQRIKEVYILKGREDRRLMP--LVHEIEALGVVVQVANRQWMDSQ 61

Query: 106 GKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + AVHQG+  +  P         P L    +S  L+VLD V DPHN+GA LRSA A   
Sbjct: 62  TEGAVHQGIIAKVLPGKQYQEGDLPDLLENTSSPFLLVLDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E++P IR++NL   L+ +  +    +G + ++   
Sbjct: 122 HAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADHN 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      IAL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 182 LYQSKLTGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|254806469|sp|A1TG08|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
 gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium
           vanbaalenii PYR-1]
          Length = 314

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 102/187 (54%), Gaps = 12/187 (6%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHVNDPHN 146
           VP   +D+I     +HQG+AL+  P         L     DA+    LL+ LD+++DP N
Sbjct: 121 VPRHDLDRIA-ANGMHQGIALQVPPYNYAHPDDLLAEAKSDAM--PALLVALDNISDPRN 177

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+RS  AF   G++  +R S S +AV  ++++GA    P  R +NLT AL++    G
Sbjct: 178 LGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAG 237

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            Q +GL +D    ++Q      I +++G+EGKGL    +E   ++  + M G  ++LN S
Sbjct: 238 LQVVGLDADGDTTVDQIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNAS 297

Query: 267 NAAAVAL 273
            AA V L
Sbjct: 298 VAAGVVL 304


>gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           tuberculostearicum SK141]
 gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           tuberculostearicum SK141]
          Length = 315

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 139/279 (49%), Gaps = 26/279 (9%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64
           K  ++I+  K  H AKL R+ R+           RH  +   + + G + V   L+   P
Sbjct: 40  KAEDRIYHAK--HKAKLERDRRN---------SGRHQKETAEMVV-GRNPVIECLHAKVP 87

Query: 65  SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           +  ++ +  T+N   RL     + +    P+  V    +D++ G   +HQG+ L+  P  
Sbjct: 88  ATTLYIVAGTRND-KRLSEAVAMCNTRNIPIIEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145

Query: 123 SPTLD-----AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              +D     A  N++  + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +AV
Sbjct: 146 YADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234
             ++++G    +P  R +N+T  +Q+    G+Q IGL +  +  L+      D + +++G
Sbjct: 206 AWRTSAGTAARLPVARATNITRTVQQFQKSGYQVIGLDAGGEHTLDTYNGATDPVVIVIG 265

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +EGKG+    +E    +  + M   +++LN S AA   L
Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVL 304


>gi|213693319|ref|YP_002323905.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 333

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 180 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 239

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT AL+ +   G+  +GL     K + E   ++D + ++LG+EG GL    +ET  ++A
Sbjct: 240 NLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIA 299

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA ++LY   N
Sbjct: 300 GIPISSSVESLNASVAAGISLYAVSN 325


>gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
           uraniireducens Rf4]
          Length = 242

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 6/230 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
            +YG+++V  AL    R     +A   +  RL+    L      PV+    + I ++ G 
Sbjct: 5   IIYGLNSVMEALRGKRRAFELFVAPGGSDRRLEKLLALAAEKGVPVRQRDKRDIARLCGT 64

Query: 108 EAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           E  HQG+AL   P     L  +       LL+VLD V DPHN+GA++RSA      G+I 
Sbjct: 65  EH-HQGVALRAEPFAYAQLSDILVPGTDGLLLVLDGVQDPHNLGALIRSAACAGAQGVII 123

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +  +   +A + K+++GA+E IP   ++N+   L+++ + GF   G   +S   +  + 
Sbjct: 124 PRDRAVGVTATVEKASAGAIETIPVAEVTNVAHTLEELKNAGFWIYGADGESPLSIFDQK 183

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               + L++G+EG+G+RP  ++    +  + + G + +LN S A  + L+
Sbjct: 184 LTGAVVLVIGSEGEGIRPLVKKKCDFLVSIPLRGGVNSLNASVAGGILLF 233


>gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 330

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 177 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 236

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT AL+ +   G+  +GL     K + E   ++D + ++LG+EG GL    +ET  ++A
Sbjct: 237 NLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIA 296

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA ++LY   N
Sbjct: 297 GIPISSSVESLNASVAAGISLYAVSN 322


>gi|116333232|ref|YP_794759.1| rRNA methylase [Lactobacillus brevis ATCC 367]
 gi|116098579|gb|ABJ63728.1| rRNA methylase [Lactobacillus brevis ATCC 367]
          Length = 255

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 123/246 (50%), Gaps = 13/246 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATK-NALARLDWDANLPHPFPVKT 95
           K    ++  N F+ G H   AAL +     K+F     K  AL  +   A   H   +  
Sbjct: 2   KPVENNEENNDFVIGRHPAVAALRSQQTINKVFLQSGLKAEALDEIRQLAKKRH-LVISE 60

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIG 148
           VP Q +D +   +  HQG+AL  +     T+D       A   +   +VLD V DPHN+G
Sbjct: 61  VPKQKLDLLTDHQN-HQGVALGVSAFAYATIDDLFDRAAAAGEAPFFLVLDGVEDPHNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A A    GII  KR +   ++V+AK+++GA+E +P  R++NL + ++++   G  
Sbjct: 120 SILRTADASGVHGIIIPKRRAVGLTSVVAKTSTGAIERVPVARVTNLVNTVRELKDRGVW 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G         + + K    ALI+G EGKG+    +ET   M  + M G +++LN S A
Sbjct: 180 VFGTDMAGTDYRDWDAKGAS-ALIIGNEGKGISRLLKETVDQMLTIPMVGEVQSLNASVA 238

Query: 269 AAVALY 274
           A + +Y
Sbjct: 239 AGLLMY 244


>gi|16767615|ref|NP_463230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56416160|ref|YP_153235.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182815|ref|YP_219232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161617640|ref|YP_001591605.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167994986|ref|ZP_02576076.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231407|ref|ZP_02656465.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168239664|ref|ZP_02664722.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168245157|ref|ZP_02670089.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168822505|ref|ZP_02834505.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444737|ref|YP_002043624.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449058|ref|YP_002048412.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469123|ref|ZP_03075107.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734163|ref|YP_002117310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197263055|ref|ZP_03163129.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197365085|ref|YP_002144722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|204927331|ref|ZP_03218533.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|213428664|ref|ZP_03361414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582911|ref|ZP_03364737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213852966|ref|ZP_03382498.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|224586209|ref|YP_002640008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238910527|ref|ZP_04654364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289829973|ref|ZP_06547424.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|52783321|sp|Q8ZKA2|RLMB_SALTY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|16422930|gb|AAL23189.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56130417|gb|AAV79923.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130448|gb|AAX68151.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161367004|gb|ABX70772.1| hypothetical protein SPAB_05503 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403400|gb|ACF63622.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407362|gb|ACF67581.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455487|gb|EDX44326.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709665|gb|ACF88886.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197096562|emb|CAR62172.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197241310|gb|EDY23930.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197287651|gb|EDY27042.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204323996|gb|EDZ09191.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205327237|gb|EDZ14001.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334208|gb|EDZ20972.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205336077|gb|EDZ22841.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205341078|gb|EDZ27842.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|224470737|gb|ACN48567.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249459|emb|CBG27324.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996701|gb|ACY91586.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160857|emb|CBW20388.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915467|dbj|BAJ39441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088796|emb|CBY98554.1| hypothetical tRNA/rRNA methyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222665|gb|EFX47737.1| 23S rRNA guanosine-2'-O- -methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322615531|gb|EFY12451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618591|gb|EFY15480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322621996|gb|EFY18846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627720|gb|EFY24511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631027|gb|EFY27791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637754|gb|EFY34455.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642418|gb|EFY39022.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644013|gb|EFY40561.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650481|gb|EFY46889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653555|gb|EFY49883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659740|gb|EFY55983.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662049|gb|EFY58265.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666202|gb|EFY62380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672622|gb|EFY68733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676052|gb|EFY72123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680536|gb|EFY76574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684570|gb|EFY80574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322717317|gb|EFZ08888.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323132707|gb|ADX20137.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192885|gb|EFZ78111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197239|gb|EFZ82379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201644|gb|EFZ86708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206158|gb|EFZ91120.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213166|gb|EFZ97968.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215540|gb|EGA00284.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219525|gb|EGA04010.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227828|gb|EGA11982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228998|gb|EGA13127.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236390|gb|EGA20466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238705|gb|EGA22757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241844|gb|EGA25873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248007|gb|EGA31944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254662|gb|EGA38473.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258279|gb|EGA41956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263575|gb|EGA47096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265829|gb|EGA49325.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270273|gb|EGA53721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|332991180|gb|AEF10163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 243

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 316

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 138/279 (49%), Gaps = 26/279 (9%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64
           K  ++++  K  H AKL R  R+           RH  +   + + G + V   L+   P
Sbjct: 40  KAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVIECLHAKVP 87

Query: 65  SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121
           +  ++    T+N   RL    ++ +    P+  V    +D++ G   +HQG+ L+  P  
Sbjct: 88  ATTLYIAAGTRND-KRLSEAVSMCNTRNIPIIEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145

Query: 122 LSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            +   D + N+       + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +AV
Sbjct: 146 YAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234
             ++++G    +P  R +N+T  +++    G+Q +GL +     L+  E   D + +++G
Sbjct: 206 AWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPVVIVIG 265

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +EGKG+     ET   +  + M G +++LN S AA   L
Sbjct: 266 SEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVL 304


>gi|152973939|ref|YP_001373456.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022691|gb|ABS20461.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cytotoxicus
           NVH 391-98]
          Length = 247

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 102/185 (55%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+      A RN +   ++LD + DPHN+G+
Sbjct: 54  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAAKRNEEPFFLILDEIEDPHNLGS 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR S   +A +AK+++GA+E+IP +R++NL+  + ++   G   
Sbjct: 112 IMRTADATGAHGIIIPKRRSVGLTASVAKASTGAIEYIPVVRVTNLSRTIDELKERGLWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K        N  I L++G+EGKG+     +    + HL M G + +LN S AA
Sbjct: 172 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGQKCDFLVHLPMVGKVTSLNASVAA 231

Query: 270 AVALY 274
           ++ +Y
Sbjct: 232 SLLMY 236


>gi|166711529|ref|ZP_02242736.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 249

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S S +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240


>gi|170767082|ref|ZP_02901535.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
           TW07627]
 gi|170124520|gb|EDS93451.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
           TW07627]
          Length = 243

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++        A   H   ++    Q +D+   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDE-KS 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              VHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A    
Sbjct: 63  DGGVHQGIIARVKPGRQYQENDLPDLIASLDQSFLLILDGVTDPHNLGACLRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L
Sbjct: 123 AVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 183 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|197251745|ref|YP_002149283.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197215448|gb|ACH52845.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 243

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLREENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|148981039|ref|ZP_01816259.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145961015|gb|EDK26338.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 246

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 10/236 (4%)

Query: 48  NLFLYGVHTVSAALN-NPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N F+YG+H V A L  +P+R I  + L   ++       +        ++ +  + +D  
Sbjct: 3   NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDERLLPLLNQLQQFGVSIQQMGRKPLDD- 61

Query: 105 VGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+  +  P   L    LD   A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 62  KAQGANHQGIIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+
Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 237


>gi|238787548|ref|ZP_04631346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           frederiksenii ATCC 33641]
 gi|238724335|gb|EEQ15977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           frederiksenii ATCC 33641]
          Length = 246

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100
            +YG+H V A L+N  ++  ++   K        D     P           ++    Q 
Sbjct: 4   IIYGIHAVKALLDNDPQRFLEVFILKGR------DDRRLQPLISELEAAGLVIQVASRQW 57

Query: 101 IDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           +D  V +  VHQG+               P L A   +  L+VLD V DPHN+GA LRSA
Sbjct: 58  LDSQV-EGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + 
Sbjct: 117 DAAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 177 EADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|331650305|ref|ZP_08351377.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
 gi|330908522|gb|EGH37041.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Escherichia
           coli AA86]
 gi|331040699|gb|EGI12857.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
          Length = 243

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERTPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|293417683|ref|ZP_06660305.1| RNA methyltransferase [Escherichia coli B185]
 gi|291430401|gb|EFF03399.1| RNA methyltransferase [Escherichia coli B185]
          Length = 243

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPELIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|239815199|ref|YP_002944109.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           S110]
 gi|239801776|gb|ACS18843.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           S110]
          Length = 248

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 82/141 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY  ++
Sbjct: 100 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 159

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   L ++       +G S D+   L Q      +AL+LGAEG+G+R  T++T   +  
Sbjct: 160 NLARTLNELKERSIWCVGTSDDAPGTLYQSDLKRPLALVLGAEGEGMRQLTRKTCDELVS 219

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LNVS A+ V LY
Sbjct: 220 IPMAGAVESLNVSVASGVCLY 240


>gi|23465262|ref|NP_695865.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|23325895|gb|AAN24501.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
           NCC2705]
          Length = 169

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 16  LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 75

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT AL+ +   G+  +GL     K + E   ++D + ++LG+EG GL    +ET  ++A
Sbjct: 76  NLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDAIA 135

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +   +++LN S AA ++LY   N
Sbjct: 136 GIPISSSVESLNASVAAGISLYAVSN 161


>gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC
           73102]
          Length = 363

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 24/261 (9%)

Query: 31  KKMQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++  +F+Q S  ++QP   +N  +YG H V +AL    R + ++  T     RL +D + 
Sbjct: 87  QRNSNFSQ-SPVSTQPIEEDNDIIYGRHPVLSALQK-QRNLNRIWIT----TRLRYDPSF 140

Query: 88  PHPF--------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ----- 133
            H           +  V P+ +D +    A HQG+A +TAP     L D +  S+     
Sbjct: 141 HHFLLQAKENGTVIDEVEPKRLDYLTNG-ANHQGVAAQTAPYGYIELADLIEQSKSVTDP 199

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++V D + DPHN+GAI+R+A A    G++  +R +   ++ + K A+GALE+    R+ 
Sbjct: 200 VIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKVAAGALENFTVSRVV 259

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL+ AL+++   GF   G ++   +P+        I L++G+EG+GL   TQ +   +  
Sbjct: 260 NLSRALEELKEAGFWIYGTAASGSEPVHTVNFKGPIVLVIGSEGEGLGMLTQRSCDFLVS 319

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G   +LN S AA +ALY
Sbjct: 320 IPLQGKTPSLNASVAAGMALY 340


>gi|289433595|ref|YP_003463467.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289169839|emb|CBH26377.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 251

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 109/192 (56%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+ VP Q I+K+V    VHQG+A + A      LD + N+          ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVV--SGVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +
Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTS 228

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 229 LNASVAASLLLY 240


>gi|28899580|ref|NP_799185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260361407|ref|ZP_05774469.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus K5030]
 gi|260876679|ref|ZP_05889034.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AN-5034]
 gi|260896628|ref|ZP_05905124.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus Peru-466]
 gi|260900887|ref|ZP_05909282.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ4037]
 gi|52783311|sp|Q87L11|RLMB_VIBPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28807816|dbj|BAC61069.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086301|gb|EFO35996.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus Peru-466]
 gi|308093965|gb|EFO43660.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AN-5034]
 gi|308106500|gb|EFO44040.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ4037]
 gi|308112895|gb|EFO50435.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus K5030]
          Length = 247

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L     +  +    K    R D D  +P  +   V  V  Q +    
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+   ++ A  L+      + A   + LL+VLD V DPHN+GA LR+
Sbjct: 59  LDDKAHG--ANHQGIIARVKVAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G +
Sbjct: 117 ADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L
Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|15804769|ref|NP_290810.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 EDL933]
 gi|15834410|ref|NP_313183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|16132002|ref|NP_418601.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|24115535|ref|NP_710045.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
           str. 301]
 gi|26251072|ref|NP_757112.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           CFT073]
 gi|30065552|ref|NP_839723.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|74314665|ref|YP_313084.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sonnei
           Ss046]
 gi|89110900|ref|AP_004680.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|91213729|ref|YP_543715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UTI89]
 gi|110644537|ref|YP_672267.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
 gi|110808098|ref|YP_691618.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 5
           str. 8401]
 gi|117626526|ref|YP_859849.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli APEC
           O1]
 gi|157158474|ref|YP_001465680.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           E24377A]
 gi|157163645|ref|YP_001460963.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli HS]
 gi|168751468|ref|ZP_02776490.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754751|ref|ZP_02779758.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760422|ref|ZP_02785429.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766459|ref|ZP_02791466.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774107|ref|ZP_02799114.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780612|ref|ZP_02805619.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784817|ref|ZP_02809824.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC869]
 gi|168801835|ref|ZP_02826842.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC508]
 gi|170021810|ref|YP_001726764.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ATCC
           8739]
 gi|170083626|ref|YP_001732946.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170679577|ref|YP_001746575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           SMS-3-5]
 gi|188494408|ref|ZP_03001678.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           53638]
 gi|191165658|ref|ZP_03027498.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
 gi|191170707|ref|ZP_03032259.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|191174517|ref|ZP_03036015.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|193066002|ref|ZP_03047060.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
 gi|193070849|ref|ZP_03051781.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E110019]
 gi|194426679|ref|ZP_03059233.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
 gi|194434585|ref|ZP_03066842.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
           1012]
 gi|194439536|ref|ZP_03071610.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           101-1]
 gi|195935970|ref|ZP_03081352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806918|ref|ZP_03249255.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813496|ref|ZP_03254825.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818601|ref|ZP_03258921.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399233|ref|YP_002273722.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4115]
 gi|215489524|ref|YP_002331955.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326510|ref|ZP_03442594.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218551450|ref|YP_002385242.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
           fergusonii ATCC 35469]
 gi|218556732|ref|YP_002389646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           IAI1]
 gi|218561339|ref|YP_002394252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
 gi|218692514|ref|YP_002400726.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           ED1a]
 gi|218697929|ref|YP_002405596.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           55989]
 gi|218702877|ref|YP_002410506.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           IAI39]
 gi|218707791|ref|YP_002415310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UMN026]
 gi|227886777|ref|ZP_04004582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           83972]
 gi|237703847|ref|ZP_04534328.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|238903287|ref|YP_002929083.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
 gi|253775195|ref|YP_003038026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037194|ref|ZP_04871271.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
 gi|254164109|ref|YP_003047217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli B
           str. REL606]
 gi|254796199|ref|YP_003081036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019825|ref|ZP_05433690.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sp. D9]
 gi|256025115|ref|ZP_05438980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia sp.
           4_1_40B]
 gi|260847010|ref|YP_003224788.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260858333|ref|YP_003232224.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|261225300|ref|ZP_05939581.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255448|ref|ZP_05947981.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285592|ref|YP_003502410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293402807|ref|ZP_06646904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1412]
 gi|293407907|ref|ZP_06651747.1| RNA methyltransferase [Escherichia coli B354]
 gi|293476491|ref|ZP_06664899.1| RNA methyltransferase [Escherichia coli B088]
 gi|298378337|ref|ZP_06988221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|300816519|ref|ZP_07096740.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           107-1]
 gi|300821273|ref|ZP_07101421.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           119-7]
 gi|300899718|ref|ZP_07117944.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           198-1]
 gi|300906010|ref|ZP_07123734.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           84-1]
 gi|300920795|ref|ZP_07137196.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           115-1]
 gi|300922413|ref|ZP_07138533.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           182-1]
 gi|300929288|ref|ZP_07144764.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           187-1]
 gi|300940667|ref|ZP_07155228.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           21-1]
 gi|300949140|ref|ZP_07163182.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           116-1]
 gi|300955237|ref|ZP_07167630.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           175-1]
 gi|300987255|ref|ZP_07178084.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           45-1]
 gi|300988642|ref|ZP_07178782.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           200-1]
 gi|301023421|ref|ZP_07187204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           69-1]
 gi|301028002|ref|ZP_07191286.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           196-1]
 gi|301045987|ref|ZP_07193170.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           185-1]
 gi|301302597|ref|ZP_07208727.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           124-1]
 gi|301325944|ref|ZP_07219365.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           78-1]
 gi|301646627|ref|ZP_07246493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           146-1]
 gi|306815605|ref|ZP_07449754.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           NC101]
 gi|307140874|ref|ZP_07500230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           H736]
 gi|307314872|ref|ZP_07594464.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
 gi|309796991|ref|ZP_07691391.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           145-7]
 gi|312965854|ref|ZP_07780080.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|312974012|ref|ZP_07788183.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|331644927|ref|ZP_08346044.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
 gi|331656008|ref|ZP_08356996.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
 gi|331660755|ref|ZP_08361687.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA206]
 gi|331665844|ref|ZP_08366738.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA143]
 gi|331671085|ref|ZP_08371918.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA271]
 gi|331671329|ref|ZP_08372127.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA280]
 gi|331680310|ref|ZP_08380969.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
 gi|331681199|ref|ZP_08381836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
 gi|332280964|ref|ZP_08393377.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
 gi|52783780|sp|P63177|RLMB_ECOLI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783781|sp|P63179|RLMB_ECO57 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783782|sp|P63180|RLMB_SHIFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|54039247|sp|P63178|RLMB_ECOL6 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|12519168|gb|AAG59376.1|AE005651_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111504|gb|AAN83686.1|AE016771_197 Hypothetical tRNA/rRNA methyltransferase yjfH [Escherichia coli
           CFT073]
 gi|537021|gb|AAA97076.1| ORF_o243 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790623|gb|AAC77137.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|13364633|dbj|BAB38579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24054863|gb|AAN45752.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043816|gb|AAP19535.1| hypothetical protein S4603 [Shigella flexneri 2a str. 2457T]
 gi|73858142|gb|AAZ90849.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|85676931|dbj|BAE78181.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|91075303|gb|ABE10184.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
           UTI89]
 gi|110346129|gb|ABG72366.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
           536]
 gi|110617646|gb|ABF06313.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115515650|gb|ABJ03725.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157069325|gb|ABV08580.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli HS]
 gi|157080504|gb|ABV20212.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E24377A]
 gi|169756738|gb|ACA79437.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli ATCC
           8739]
 gi|169891461|gb|ACB05168.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170517295|gb|ACB15473.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           SMS-3-5]
 gi|187770173|gb|EDU34017.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014500|gb|EDU52622.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489607|gb|EDU64710.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           53638]
 gi|189001755|gb|EDU70741.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357886|gb|EDU76305.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364243|gb|EDU82662.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368907|gb|EDU87323.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374953|gb|EDU93369.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC869]
 gi|189376090|gb|EDU94506.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC508]
 gi|190904353|gb|EDV64062.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
 gi|190905197|gb|EDV64838.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|190908931|gb|EDV68518.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|192926325|gb|EDV80961.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
 gi|192955795|gb|EDV86266.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E110019]
 gi|194415418|gb|EDX31686.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
 gi|194417170|gb|EDX33282.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
           1012]
 gi|194421535|gb|EDX37548.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           101-1]
 gi|208726719|gb|EDZ76320.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734773|gb|EDZ83460.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738724|gb|EDZ86406.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160633|gb|ACI38066.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209750198|gb|ACI73406.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750200|gb|ACI73407.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750202|gb|ACI73408.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750204|gb|ACI73409.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750206|gb|ACI73410.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|215267596|emb|CAS12051.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322731|gb|EEC31155.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354661|emb|CAV01659.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli 55989]
 gi|218358992|emb|CAQ91652.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218363501|emb|CAR01155.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI1]
 gi|218368108|emb|CAR05915.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli S88]
 gi|218372863|emb|CAR20743.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI39]
 gi|218430078|emb|CAR10923.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ED1a]
 gi|218434888|emb|CAR15826.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli UMN026]
 gi|222035950|emb|CAP78695.1| 23S rRNA [Escherichia coli LF82]
 gi|226840300|gb|EEH72302.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
 gi|226901759|gb|EEH88018.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227836350|gb|EEJ46816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           83972]
 gi|238859752|gb|ACR61750.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
 gi|242379702|emb|CAQ34526.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer, subunit of
           23S rRNA 2'-O-ribose G2251 methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|253326239|gb|ACT30841.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976010|gb|ACT41681.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253980166|gb|ACT45836.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BL21(DE3)]
 gi|254595599|gb|ACT74960.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756982|dbj|BAI28484.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257762157|dbj|BAI33654.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260450993|gb|ACX41415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli DH1]
 gi|281181276|dbj|BAI57606.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|281603642|gb|ADA76626.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shigella
           flexneri 2002017]
 gi|284924362|emb|CBG37478.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 042]
 gi|290765465|gb|ADD59426.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291320944|gb|EFE60386.1| RNA methyltransferase [Escherichia coli B088]
 gi|291429722|gb|EFF02736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1412]
 gi|291472158|gb|EFF14640.1| RNA methyltransferase [Escherichia coli B354]
 gi|294489951|gb|ADE88707.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           IHE3034]
 gi|298280671|gb|EFI22172.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|299878912|gb|EFI87123.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           196-1]
 gi|300302030|gb|EFJ58415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           185-1]
 gi|300305875|gb|EFJ60395.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           200-1]
 gi|300317814|gb|EFJ67598.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           175-1]
 gi|300356729|gb|EFJ72599.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           198-1]
 gi|300397008|gb|EFJ80546.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           69-1]
 gi|300402177|gb|EFJ85715.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           84-1]
 gi|300407732|gb|EFJ91270.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           45-1]
 gi|300412218|gb|EFJ95528.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           115-1]
 gi|300421232|gb|EFK04543.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           182-1]
 gi|300451388|gb|EFK15008.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           116-1]
 gi|300454555|gb|EFK18048.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           21-1]
 gi|300462781|gb|EFK26274.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           187-1]
 gi|300526162|gb|EFK47231.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           119-7]
 gi|300530749|gb|EFK51811.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           107-1]
 gi|300842122|gb|EFK69882.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           124-1]
 gi|300847297|gb|EFK75057.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           78-1]
 gi|301075174|gb|EFK89980.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           146-1]
 gi|305851267|gb|EFM51722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           NC101]
 gi|306905675|gb|EFN36204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
 gi|307556347|gb|ADN49122.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ABU 83972]
 gi|307629252|gb|ADN73556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UM146]
 gi|308119404|gb|EFO56666.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           145-7]
 gi|310331546|gb|EFP98802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|312289097|gb|EFR16991.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|312948829|gb|ADR29656.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313646345|gb|EFS10807.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315063494|gb|ADT77821.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli W]
 gi|315138734|dbj|BAJ45893.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Escherichia coli
           DH1]
 gi|315255525|gb|EFU35493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           85-1]
 gi|315288461|gb|EFU47859.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           110-3]
 gi|315293538|gb|EFU52890.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           153-1]
 gi|315299061|gb|EFU58315.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           16-3]
 gi|320180693|gb|EFW55620.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella boydii ATCC
           9905]
 gi|320193560|gb|EFW68197.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           WV_060327]
 gi|320200690|gb|EFW75276.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           EC4100B]
 gi|320644307|gb|EFX13372.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H- str. 493-89]
 gi|320649625|gb|EFX18149.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H- str. H 2687]
 gi|320655021|gb|EFX22982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660528|gb|EFX27989.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665797|gb|EFX32834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323156003|gb|EFZ42165.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli EPECa14]
 gi|323161969|gb|EFZ47841.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli E128010]
 gi|323166663|gb|EFZ52421.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella sonnei 53G]
 gi|323189941|gb|EFZ75219.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli RN587/1]
 gi|323380427|gb|ADX52695.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli KO11]
 gi|323935410|gb|EGB31754.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323940099|gb|EGB36293.1| RNA methyltransferase [Escherichia coli E482]
 gi|323946028|gb|EGB42065.1| RNA methyltransferase [Escherichia coli H120]
 gi|323950751|gb|EGB46629.1| RNA methyltransferase [Escherichia coli H252]
 gi|323955467|gb|EGB51231.1| RNA methyltransferase [Escherichia coli H263]
 gi|323960329|gb|EGB55969.1| RNA methyltransferase [Escherichia coli H489]
 gi|323965566|gb|EGB61020.1| RNA methyltransferase [Escherichia coli M863]
 gi|323970565|gb|EGB65824.1| RNA methyltransferase [Escherichia coli TA007]
 gi|324005243|gb|EGB74462.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           57-2]
 gi|324013823|gb|EGB83042.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           60-1]
 gi|324019358|gb|EGB88577.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           117-3]
 gi|324118745|gb|EGC12637.1| RNA methyltransferase [Escherichia coli E1167]
 gi|326346655|gb|EGD70389.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. 1044]
 gi|327250120|gb|EGE61839.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli STEC_7v]
 gi|331035902|gb|EGI08140.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
 gi|331046362|gb|EGI18452.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
 gi|331051797|gb|EGI23836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA206]
 gi|331056895|gb|EGI28889.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA143]
 gi|331061674|gb|EGI33600.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA271]
 gi|331071174|gb|EGI42531.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA280]
 gi|331071773|gb|EGI43109.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
 gi|331081420|gb|EGI52581.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
 gi|332083177|gb|EGI88408.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 5216-82]
 gi|332103316|gb|EGJ06662.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
 gi|332346257|gb|AEE59591.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332749056|gb|EGJ79479.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-671]
 gi|332749325|gb|EGJ79746.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 4343-70]
 gi|332763228|gb|EGJ93471.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71]
 gi|333010329|gb|EGK29762.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri VA-6]
 gi|333011163|gb|EGK30577.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-272]
          Length = 243

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|259500942|ref|ZP_05743844.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|315653977|ref|ZP_07906893.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|259167636|gb|EEW52131.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|315488673|gb|EFU78319.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
          Length = 262

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 24/241 (9%)

Query: 50  FLYGVH-------TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           F++G H       T  A+L N   KIF     + ++A   +         V++VP   +D
Sbjct: 14  FVFGRHAGLDFLRTQDASLIN---KIFLQNGVQASIADQVYQLAKKKKIIVQSVPKSKLD 70

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVA 156
           K+V ++  HQGL L   P     L+ +  S        L++LD + DPHN+G+ILR+A A
Sbjct: 71  KLVDQQN-HQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADA 129

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLS 213
              DGII  +R +   ++V+AK+++GA++++P +R++NL    D L+    W F T  +S
Sbjct: 130 TGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGT-AMS 188

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D+    +      K  L++G EGKG+ P   +       + M G +++LN   A  + L
Sbjct: 189 GDNYTNWDAR---GKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILL 245

Query: 274 Y 274
           Y
Sbjct: 246 Y 246


>gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862]
          Length = 298

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 134/274 (48%), Gaps = 27/274 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIF--QLL 72
           D  +    R  R  ++M+   +    T+Q E  F++G H    AL   +   K++    L
Sbjct: 27  DRRFNDRDRQPRQKREMRVEAEAVDDTAQTE--FVFGHHASVEALKGETEINKVWLQSGL 84

Query: 73  ATK-----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           A K      ALA+            ++  P   +D++   +  HQG+ L  A     T+D
Sbjct: 85  ADKIRNEVMALAK-------KRGLIIQDAPKAKLDELTNGQN-HQGVVLSIAAYAYATID 136

Query: 128 -----AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                A   S+    +VLD + DPHN+G+ILR+A A    GII  KR +   ++V+AK++
Sbjct: 137 DLFAKAAEKSEAPFFLVLDSIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSVVAKTS 196

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +GA+EH+P  R++NL   ++++   G    G   D K     +      ALI+G EGKG+
Sbjct: 197 TGAIEHVPVARVTNLVQTVEQLKERGLWVFGTDMDGKDYRRWDAAG-PTALIIGNEGKGI 255

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P  ++T      + M G +++LN S AA++ +Y
Sbjct: 256 SPLLKKTVDETLTIPMVGHVQSLNASVAASLLIY 289


>gi|302190606|ref|ZP_07266860.1| tRNA/rRNA methyltransferase [Lactobacillus iners AB-1]
 gi|309803736|ref|ZP_07697822.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 11V1-d]
 gi|309806501|ref|ZP_07700505.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 03V1-b]
 gi|309809230|ref|ZP_07703100.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312871532|ref|ZP_07731625.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 3008A-a]
 gi|312872509|ref|ZP_07732577.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312873896|ref|ZP_07733934.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2052A-d]
 gi|312874966|ref|ZP_07734985.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2053A-b]
 gi|325912438|ref|ZP_08174833.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 143-D]
 gi|325913087|ref|ZP_08175457.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 60-B]
 gi|329920390|ref|ZP_08277122.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 1401G]
 gi|308164145|gb|EFO66406.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 11V1-d]
 gi|308167100|gb|EFO69275.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 03V1-b]
 gi|308170464|gb|EFO72487.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311089711|gb|EFQ48136.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090572|gb|EFQ48978.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091871|gb|EFQ50247.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311092927|gb|EFQ51278.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 3008A-a]
 gi|325475780|gb|EGC78951.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 143-D]
 gi|325477508|gb|EGC80650.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 60-B]
 gi|328936066|gb|EGG32519.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 1401G]
          Length = 258

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 24/241 (9%)

Query: 50  FLYGVH-------TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           F++G H       T  A+L N   KIF     + ++A   +         V++VP   +D
Sbjct: 10  FVFGRHAGLDFLRTQDASLIN---KIFLQNGVQASIADQVYQLAKKKKIIVQSVPKSKLD 66

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVA 156
           K+V ++  HQGL L   P     L+ +  S        L++LD + DPHN+G+ILR+A A
Sbjct: 67  KLVDQQN-HQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADA 125

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLS 213
              DGII  +R +   ++V+AK+++GA++++P +R++NL    D L+    W F T  +S
Sbjct: 126 TGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGT-AMS 184

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D+    +      K  L++G EGKG+ P   +       + M G +++LN   A  + L
Sbjct: 185 GDNYTNWDAR---GKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILL 241

Query: 274 Y 274
           Y
Sbjct: 242 Y 242


>gi|317126837|ref|YP_004093119.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471785|gb|ADU28388.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 252

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 105/188 (55%), Gaps = 7/188 (3%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHN 146
           + VP + +D++V K+  HQG+  + A      +D +      +N Q   ++LD + DPHN
Sbjct: 53  QIVPKKKLDQMVPKDQQHQGVIAQVAAYEFQEIDVLFERARQKNEQPFFLLLDELEDPHN 112

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G+ILR+A A    GII  KR S   +  +AK+++GA+EH+P  R++NL   + ++   G
Sbjct: 113 LGSILRTADAVGAHGIIVPKRRSVGLTYTVAKASAGAIEHVPVTRVTNLARTMDELKKEG 172

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +G  +  ++   +   +  + L++G+EG+G+    +E    +  + + G + +LN S
Sbjct: 173 LWFVGTDAKGEQDYREVDLDMPVVLVIGSEGRGISRLVKEKCDFLVQIPLAGKVTSLNAS 232

Query: 267 NAAAVALY 274
            AA++ +Y
Sbjct: 233 VAASLLMY 240


>gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
 gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
          Length = 250

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 109/192 (56%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V+ VP + +D++    A HQG+    A      L+ +       +     ++LD + DPH
Sbjct: 53  VQFVPKKKVDQL--SSANHQGIVASVAAYQYAELEDLFAAAAKKQEDPFFLILDELEDPH 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR S S +AV+AK+++GA+EH+P +R++NL   + ++   
Sbjct: 111 NLGSIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTVDELKER 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           G    G  +D+K  ++   K D    +A+I+G+EGKG+    +E    + HL M G + +
Sbjct: 171 GVWIAG--TDAKGSVDYR-KMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTS 227

Query: 263 LNVSNAAAVALY 274
           LN S AAA+ +Y
Sbjct: 228 LNASVAAALLMY 239


>gi|260870912|ref|YP_003237314.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|257767268|dbj|BAI38763.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|323176061|gb|EFZ61653.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1180]
          Length = 243

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELICIPMAGSVSSLNVSVATGICLF 236


>gi|253991546|ref|YP_003042902.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638424|emb|CAR67046.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (ec 2.1.1.-) (23
           rrna gm2251 2'-o-methyltransferase) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782996|emb|CAQ86161.1| 23S rRNA (guanosine-2'-o-)-methyltransferase [Photorhabdus
           asymbiotica]
          Length = 245

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFP-----VKTVPPQTIDK 103
            +YG+H V A L+   ++  ++   K    R D   N L H        V+    Q +D 
Sbjct: 4   IIYGIHAVKALLDRDPQRFMEVYVLK---GREDRRLNPLIHELENIGVTVQLANRQWLDN 60

Query: 104 IVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA A 
Sbjct: 61  QT-EGAVHQGVIAKVKPGRQYQENDLPDLLAKVETPFLLVLDGVTDPHNLGACLRSADAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +A   K A GA E +P +R++NL   L+ +       +G + ++ 
Sbjct: 120 GVHVVIVPRDRSAQLNATAKKVACGAAESVPLVRVTNLARTLRVLQEHNIWVVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L Q      IAL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 180 HTLYQSKLTGPIALVMGAEGEGMRRLTREHCDELISIPMTGSVSSLNVSVATGVCLF 236


>gi|73663533|ref|YP_302314.1| SpoU rRNA methylase family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|90110724|sp|Q49V41|TRMHL_STAS1 RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|72496048|dbj|BAE19369.1| SpoU rRNA Methylase family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 249

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 107/189 (56%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V++VP   ID +   ++ HQG+A   AP      DA    Q        +++LD + DPH
Sbjct: 50  VQSVPKSKIDGL--SDSPHQGVAAYIAPYEYADFDAFVAQQKAQDKLSTVLILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA++HIP +R++NL + ++ +   
Sbjct: 108 NLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTNLANTIETLKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+  +G  +++     +      + +++G+EG+G+    +E      ++ M G + +LN 
Sbjct: 168 GYWIVGTEAENSTDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDFYINIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|309704685|emb|CBJ04035.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ETEC
           H10407]
          Length = 243

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   IIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 315

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 139/279 (49%), Gaps = 26/279 (9%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64
           K  ++I+  K  H AKL R+ R+           RH  +   + + G + V   L+   P
Sbjct: 40  KAEDRIYHAK--HKAKLERDRRN---------SGRHQKETAEMVV-GRNPVIECLHAKVP 87

Query: 65  SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           +  ++ +  T+N   RL     + +    P+  V    +D++ G   +HQG+ L+  P  
Sbjct: 88  ATTLYIVAGTRND-KRLSEAVAMCNTRNIPIIEVQRHEMDRMTGN-GMHQGIGLQIPPYK 145

Query: 123 SPTLD-----AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              +D     A  N++  + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +AV
Sbjct: 146 YADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234
             ++++G    +P  R +N+T  +Q+    G+Q +GL +  +  L+      D + +++G
Sbjct: 206 AWRTSAGTAARLPVARATNITRTVQQFQKSGYQVVGLDAGGEHTLDTYNGATDPVVIVIG 265

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +EGKG+    +E    +  + M   +++LN S AA   L
Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVL 304


>gi|200386744|ref|ZP_03213356.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199603842|gb|EDZ02387.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 243

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGIRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88]
 gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88]
          Length = 245

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 12/192 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPH 145
            P+K V  + +D+I   E  HQG+A  T P    +++ +  S       +++LD + DPH
Sbjct: 48  IPIKNVDKKKLDEISEGEN-HQGVAAYTTPYKYYSVEEILESSKGKAPFILILDEIQDPH 106

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N GAI+R+A  F  DGII  KR S   + ++ KS+ GA+EH+   +++N+    D L++ 
Sbjct: 107 NFGAIIRTAEVFGVDGIIIPKRRSVGITPIVYKSSVGAVEHVKIAKVNNINSTIDFLKEN 166

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           + W +   G    + + +  E     IAL++G+EGKG+   T+E    +  + M G I +
Sbjct: 167 NIWIY---GADMATDRYIYSENLKGPIALVVGSEGKGISKLTKEKCDILVKIPMSGQINS 223

Query: 263 LNVSNAAAVALY 274
           LN S A  + +Y
Sbjct: 224 LNASVAGGIVMY 235


>gi|58581707|ref|YP_200723.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623620|ref|YP_450992.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58426301|gb|AAW75338.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367560|dbj|BAE68718.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 255

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S S +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240


>gi|320190688|gb|EFW65338.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           O157:H7 str. EC1212]
 gi|323171612|gb|EFZ57258.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli LT-68]
 gi|323182286|gb|EFZ67696.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1357]
 gi|326345488|gb|EGD69231.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           O157:H7 str. 1125]
 gi|332083729|gb|EGI88947.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 155-74]
 gi|332761878|gb|EGJ92152.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2747-71]
 gi|333009255|gb|EGK28711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-218]
 gi|333011990|gb|EGK31375.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-304]
 gi|333012643|gb|EGK32023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-227]
          Length = 240

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 1   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 55

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 56  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 115

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 116 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 175

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 176 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 233


>gi|291571381|dbj|BAI93653.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 312

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWDANLPHPFPVKT 95
           S  T  PE   +YG HTV AAL N        +   L +      L  +A       V  
Sbjct: 46  SAETEPPEEDLIYGRHTVLAALENGRSLNRVWVISQLRSDTRFQPLLQEAKAKGAI-VDG 104

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR--NSQ-LLMVLDHVNDPHNIG 148
              Q +D+I  + A HQG+  +  P     L+  +   +  NSQ +L+ +D + DPHN+G
Sbjct: 105 ASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDGITDPHNLG 163

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R+A A    G+I  +R +   +A + K A+GALE  P  R+ NL     ++ S GF 
Sbjct: 164 AIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTFTELKSAGFW 223

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G  +   +PL +   +  I L++G+EG+GL     E    +  + + G+  +LNVS A
Sbjct: 224 IYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVA 283

Query: 269 AAVALY 274
             +ALY
Sbjct: 284 TGMALY 289


>gi|82779438|ref|YP_405787.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella dysenteriae
           Sd197]
 gi|81243586|gb|ABB64296.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 243

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLCQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|311281268|ref|YP_003943499.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
           SCF1]
 gi|308750463|gb|ADO50215.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
           SCF1]
          Length = 243

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q   +   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQVASRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  ++  L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSEGAVHQGIIARVKPGRQYQENDLPDLLAQFDNPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|323141397|ref|ZP_08076288.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414146|gb|EFY04974.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
           sp. YIT 12067]
          Length = 248

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 11/198 (5%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVND 143
            PV+TV  + +DK+  K   HQG+A   AP+   TLD V      +N +  +++LD + D
Sbjct: 51  VPVETVKAEKLDKLA-KGLRHQGVAALAAPIAFRTLDDVFACAAEKNEEPFILLLDELQD 109

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++RSA A    G++  +R S   +AV+AK ++GA+E++P ++I N+   ++++ 
Sbjct: 110 PQNVGALIRSADAAGVHGVLMPRRRSCPLNAVVAKISAGAVEYVPVVQIGNIAQTIEELK 169

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G   +G   D        +    I L++GAEG+GL    ++    +  + M G + +L
Sbjct: 170 QRGCWVVGADMDGVDFYAANMSG-PIVLVIGAEGRGLGRLVKQKCDDVVSIPMNGGVNSL 228

Query: 264 NVSNAAAVALY--ITQNH 279
           N S A AV +Y  + Q H
Sbjct: 229 NASAAGAVLMYEVVRQRH 246


>gi|222152119|ref|YP_002561279.1| hypothetical protein MCCL_1876 [Macrococcus caseolyticus JCSC5402]
 gi|222121248|dbj|BAH18583.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 263

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 106/188 (56%), Gaps = 8/188 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHN 146
           V+TVP   +D +   +  HQG+    +P     L+   +++       +M+LD + DPHN
Sbjct: 68  VQTVPKSKLDHL--SDVPHQGVLAMISPYEYTELEDFLSNKASDKLSTIMILDGLEDPHN 125

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G+I+R+A A   DGI+  KR S S +  + K+++GA+EH+P +R++N+  A+ K+   G
Sbjct: 126 LGSIIRTADAIGIDGIMIPKRRSVSLNQTVVKASTGAVEHVPVMRVNNINQAIDKLKDAG 185

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +   G  +       +   +  +A+++G+EG+G+    +E    + HL M G + +LN S
Sbjct: 186 YWVAGTDAKQSVDYRKMTADIDLAIVIGSEGEGMSRLVKEKCDFLIHLPMVGHVNSLNAS 245

Query: 267 NAAAVALY 274
            AA++ +Y
Sbjct: 246 VAASLLMY 253


>gi|324112223|gb|EGC06201.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325499715|gb|EGC97574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
           fergusonii ECD227]
          Length = 243

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|229542223|ref|ZP_04431283.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
           36D1]
 gi|229326643|gb|EEN92318.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
           36D1]
          Length = 247

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV-----RNSQ-LLMVLDHVNDPH 145
           V+ VP + ID++   +  HQG LAL  A   + T D       RN    +++LD + DPH
Sbjct: 50  VQFVPKKKIDQVA--DGAHQGVLALVAAYRYAETGDMFKLAKERNEHPFILILDELEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A    G+I  KR S + +A +AK+++GA+EHIP  R++NL+  +  +   
Sbjct: 108 NLGSILRTADAVGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARVTNLSQTIAGLKQQ 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  +       Q   +  + L++G+EGKG+    +E    +  L M G + +LN 
Sbjct: 168 GLWIAGTDASGTTDYRQMDADLPLCLVIGSEGKGMSRIVKEACDFLIRLPMAGHVTSLNA 227

Query: 266 SNAAAVALY 274
           S AA + +Y
Sbjct: 228 SVAAGLLMY 236


>gi|161505128|ref|YP_001572240.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866475|gb|ABX23098.1| hypothetical protein SARI_03262 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 243

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R   +F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQFL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A+     L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSEGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 330

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 16/238 (6%)

Query: 50  FLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            + G ++V  AL    P+  ++  Q L T + + R  + A      P+   P   +D++ 
Sbjct: 87  LVVGRNSVVEALQGGVPATALYVQQFLDTDDRV-RDAFQAANERGVPLMEAPRAQLDQMT 145

Query: 106 GKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           G    HQGL L+  P        LL    DA +++ L++ LD V D  N+GA++RSA AF
Sbjct: 146 GG-LNHQGLVLQVPPYEYAHPDDLLEGAADAGQDA-LIVALDGVTDSRNLGAVVRSAAAF 203

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++  +R +   +A   K++SGA   +P  R +NLT AL+     G   +GL++D +
Sbjct: 204 GAHGVVIPERRAAGMTAGAWKTSSGAAARLPVARATNLTRALESYQKAGVMVVGLAADGE 263

Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + + +  N  + ++ G+EGKGL     ET   +  + MPG  ++LN   AA + LY
Sbjct: 264 AEIGDLDALNGPVVIVAGSEGKGLSRLVSETCDLLVRIPMPGQTESLNAGVAAGIVLY 321


>gi|284053857|ref|ZP_06384067.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
          Length = 307

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWDANLPHPFPVKT 95
           S  T  PE   +YG HTV AAL N        +   L +      L  +A       V  
Sbjct: 46  SAETEPPEEDLIYGRHTVLAALENGRSLNRVWVISQLRSDTRFQPLLQEAKAKGAI-VDG 104

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR--NSQ-LLMVLDHVNDPHNIG 148
              Q +D+I  + A HQG+  +  P     L+  +   +  NSQ +L+ +D + DPHN+G
Sbjct: 105 ASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDGITDPHNLG 163

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R+A A    G+I  +R +   +A + K A+GALE  P  R+ NL     ++ S GF 
Sbjct: 164 AIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTFTELKSAGFW 223

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G  +   +PL +   +  I L++G+EG+GL     E    +  + + G+  +LNVS A
Sbjct: 224 IYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGVTPSLNVSVA 283

Query: 269 AAVALY 274
             +ALY
Sbjct: 284 TGMALY 289


>gi|238764700|ref|ZP_04625644.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           kristensenii ATCC 33638]
 gi|238697096|gb|EEP89869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           kristensenii ATCC 33638]
          Length = 246

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H+V A L+N  ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V +  VHQG+               P L     +  L+VLD V DPHN+GA LRSA 
Sbjct: 59  DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71037626|gb|AAZ17934.1| probable RNA methyltransferase, TrmH family, group 3 [Psychrobacter
           arcticus 273-4]
          Length = 256

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 100/176 (56%), Gaps = 14/176 (7%)

Query: 111 HQGLALETAPL------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+ L   PL      L  TL A R   LL+VLD + D HN GA LR+AVA   D +I 
Sbjct: 70  HQGVVLNARPLGFADEGLLDTL-AGREDCLLLVLDQITDAHNFGACLRTAVAMGVDAVIC 128

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQ 222
            K ++ S +  +AK + GA E +P + ++NL   L K+ + G    G  L++D+ KPL  
Sbjct: 129 PKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNADA-KPLHT 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274
                KIA+I+G+EG+G+R  T E+   + ++ M     G +++LNVS A  +ALY
Sbjct: 188 ADLTGKIAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALY 243


>gi|167553783|ref|ZP_02347529.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168263278|ref|ZP_02685251.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464747|ref|ZP_02698650.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|198243348|ref|YP_002218253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205355126|ref|YP_002228927.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859514|ref|YP_002246165.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|195632589|gb|EDX51043.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197937864|gb|ACH75197.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205274907|emb|CAR39974.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321857|gb|EDZ09696.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205348047|gb|EDZ34678.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711317|emb|CAR35695.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326626058|gb|EGE32403.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326630284|gb|EGE36627.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 243

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A+     L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|123440768|ref|YP_001004760.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087729|emb|CAL10514.1| putative methylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 246

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H+V A L+N  ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V +  VHQG+               P L     +  L+VLD V DPHN+GA LRSA 
Sbjct: 59  DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|309787684|ref|ZP_07682295.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|308924434|gb|EFP69930.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
          Length = 240

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 1   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 55

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 56  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 115

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 116 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 175

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 176 DHTLCQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 233


>gi|239825674|ref|YP_002948298.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
 gi|239805967|gb|ACS23032.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
          Length = 245

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145
           V+ VP + +D++V  E  HQG+  + A      +D +  R S+       ++LD + DPH
Sbjct: 48  VQYVPKKKLDQMV--EGAHQGVVAQVAAYRYYEVDDLFARASEKNEPPFFLILDELEDPH 105

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR S   +A +AK+++GA+E++P  R++NL   + ++   
Sbjct: 106 NLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYVPVARVTNLARTIDELKER 165

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +G  + +K           +AL++G+EGKG+     E    + HL M G + +LN 
Sbjct: 166 GVWIVGTDAKAKDDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIHLPMRGHVTSLNA 225

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 226 SVAASLLMY 234


>gi|241895139|ref|ZP_04782435.1| TrmH family tRNA/rRNA methyltransferase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871635|gb|EER75386.1| TrmH family tRNA/rRNA methyltransferase [Weissella
           paramesenteroides ATCC 33313]
          Length = 268

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 127/258 (49%), Gaps = 21/258 (8%)

Query: 32  KMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPSRKIFQLLAT------KNALARLDW 83
           K Q+  ++ +H  Q EN   F+YG H    AL   +      L T      +N LA L  
Sbjct: 7   KKQAGGKRQQHEPQGENQAEFVYGHHAAVEALKGQTEINKVWLQTGLADKARNELASLAK 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLM 136
              L     ++  P   +D++   E  HQG+ L  A     T+D +         +   +
Sbjct: 67  KRGLV----MQDAPKAKLDELTNGEN-HQGVVLSIAAYAYVTIDDLFAKAAEKDEAPFFL 121

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+G+I+R+A A    GII  KR +   ++V+AK+++GA+EH+P  R++NL 
Sbjct: 122 VLDSIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVTNLV 181

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             ++++   G    G   +       +      ALI+G EGKG+ P  +++      + M
Sbjct: 182 QTVEQLKERGVWVFGTDMNGNDYRRWD-ATGATALIIGNEGKGISPLLKKSVDETLTIPM 240

Query: 257 PGIIKALNVSNAAAVALY 274
            G +++LN S AA++ +Y
Sbjct: 241 IGHVQSLNASVAASLLIY 258


>gi|307824282|ref|ZP_07654508.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
           tundripaludum SV96]
 gi|307734662|gb|EFO05513.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
           tundripaludum SV96]
          Length = 248

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 15/238 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQ-LLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----V 105
           +YG+H+V +AL+   +KI +  + ++    RL     L        + P+ +D+      
Sbjct: 6   IYGIHSVQSALDYSPKKIGKAWIDSQRQDKRL---TQLIDDLLDLGIEPEKVDRKKLDRF 62

Query: 106 GKEAVHQGLALET---APLLSPTL-DAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +   HQG+ +E      L    L DAV     + L +VLD+V DPHN GA LR+A A  
Sbjct: 63  AEGNNHQGIVIEVEMPGELSESDLKDAVLTLSGTPLFLVLDNVQDPHNFGACLRTADATG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I TK  +   +  + K ASGA E +P  +++NL+  L+ +   G   +G + ++ +
Sbjct: 123 VHGVIITKDNATGITPTVCKVASGAAETVPVYQVTNLSRTLRWLKEQGIWVMGAAGEATQ 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              Q      +AL++GAEGKGLR  T+E    +  L M G +++LN+S A  V LY T
Sbjct: 183 TAYQTDFTVPLALVVGAEGKGLRRLTKEQCDILVKLPMRGQVESLNLSVATGVLLYET 240


>gi|283786859|ref|YP_003366724.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282950313|emb|CBG89960.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 243

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 113/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R   +F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQFL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A      L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSEGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|50083619|ref|YP_045129.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|52783290|sp|Q6FF50|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 248

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 14/242 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH+V + L     ++  L   K     RL     L  PF   V+     +
Sbjct: 2   AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILELAEPFGISVQKASRDS 59

Query: 101 IDKIVGKEAVHQGL--ALETAPLLSP-TLDAV--RNSQ-LLMVLDHVNDPHNIGAILRSA 154
           ++K+ G    HQG+  A+   P+L+   LD +   N Q LL+ LD V DPHN+GA +R+A
Sbjct: 60  LEKLAGL-PFHQGVVAAVRPHPVLNEKDLDQLLQNNDQALLLALDQVTDPHNLGACIRTA 118

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLS 213
            A     +I  +  S S +    K A+G  E + +I+++NL   L  + +  F + +G  
Sbjct: 119 AAMGIAAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTM 178

Query: 214 SDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            D K  P+++   +  +A+++GAE  GLRP TQ       ++ M G +++LNVS AA +A
Sbjct: 179 LDEKALPIQKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMA 238

Query: 273 LY 274
           LY
Sbjct: 239 LY 240


>gi|315617593|gb|EFU98199.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 3431]
          Length = 243

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++        A   H   ++    Q +D+   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDE-KS 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              VHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A    
Sbjct: 63  DGGVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L
Sbjct: 123 AVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 183 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|256848162|ref|ZP_05553606.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715222|gb|EEU30199.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 249

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 133/242 (54%), Gaps = 21/242 (8%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           PE  F+ G H   AAL +     K+F Q     +A+A++   A   H   +  VP   +D
Sbjct: 6   PE--FVIGRHPAVAALKSDQEINKVFIQKGLRTDAIAQIIKLAKERH-LVISNVPKTKLD 62

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAILRSAV 155
           ++V  +  HQG+AL  A     T+D +  N+Q       L++LD + DPHN+G+I+R+A 
Sbjct: 63  QMVDHQN-HQGVALAVAAYHYATIDDLFANAQAHDEEPFLLILDELADPHNLGSIMRTAD 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGL 212
           A    GII  KR +   ++V+AK+++GA+E +P  R++NL    +++ +   W F T   
Sbjct: 122 AAGVHGIIIPKRRAVGLTSVVAKTSAGAIERVPVARVTNLVQTAKELKARGVWLFGTDMQ 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +D ++   Q      +A+++G EGKG+ P  ++T   M  + M G +++LN S AA++ 
Sbjct: 182 GTDYRRWDAQ----GAVAVVIGNEGKGISPLLKKTCDEMLTIPMVGQVQSLNASVAASLL 237

Query: 273 LY 274
           +Y
Sbjct: 238 IY 239


>gi|237729114|ref|ZP_04559595.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
 gi|226908843|gb|EEH94761.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
          Length = 243

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R   +F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQFL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +    ++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSEGAVHQGIIARVKPGRQYQENDLPDLIATLDQPFFLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|68249454|ref|YP_248566.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 86-028NP]
 gi|68057653|gb|AAX87906.1| probable tRNA/rRNA methyltransferase [Haemophilus influenzae
           86-028NP]
          Length = 246

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L  +P R I   +  +    RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKRREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A  L+   LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +      W    +G + ++ 
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|81429291|ref|YP_396292.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610934|emb|CAI55986.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 295

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 9/193 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           ++ VP   +D +  ++  HQG+ L  AP    ++D       A      +++LD++ DPH
Sbjct: 99  IQNVPKNKLDLLSDRQN-HQGIILAIAPFEYASVDDIFAKAKAQEEEPFILILDNLEDPH 157

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  K  +   ++ +AK+++GA+EHIP  R++NLT  ++K+   
Sbjct: 158 NLGSIMRTADAVGVHGIIIPKHRAVGLTSTVAKTSTGAIEHIPVARVTNLTQEIKKLKDR 217

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G         + + K   I LI+G EGKGL P  ++       + M G +++LN 
Sbjct: 218 GLWIFGTDMAGTDYRKWDAKG-PIGLIIGNEGKGLSPIVKKEVDQTLTIPMVGHVQSLNA 276

Query: 266 SNAAAVALYITQN 278
           S AA V +Y   N
Sbjct: 277 SVAAGVLMYQAYN 289


>gi|270265007|ref|ZP_06193270.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
 gi|270040941|gb|EFA14042.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
          Length = 243

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L+N  ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATG-----IVIQVANRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D+ V + AVHQG+              L   L+ + ++  L+VLD V DPHN+GA LRSA
Sbjct: 59  DEKV-EGAVHQGIIARVREGRQYQENDLPGLLEGI-DTPFLLVLDGVTDPHNLGACLRSA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + 
Sbjct: 117 DAAGVHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 177 EADHTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLF 236


>gi|255659335|ref|ZP_05404744.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
           DSM 20544]
 gi|260848417|gb|EEX68424.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
           DSM 20544]
          Length = 289

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    AP+    L+       A   +  L++LD + DPHN+GA+LR+A A    GI+
Sbjct: 108 HQGVLAYVAPVPYAELEDILKAAEAKGEAPFLVLLDELEDPHNLGALLRTADATGVHGIL 167

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR S S +A +AK+++GA+E++P  RI N+   L+K+   GF   G   D +K   + 
Sbjct: 168 IPKRRSVSLNATVAKTSAGAVEYVPVARIGNIAQTLKKLKEKGFWVAGADMDGEKAYYEA 227

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                + L++G+EGKG+   T+E    +  + M G I +LN S A ++ +Y
Sbjct: 228 DLTGPLVLVVGSEGKGMSRLTKEACDFIVRMPMVGRINSLNASVAGSILMY 278


>gi|223982632|ref|ZP_03632866.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
           12042]
 gi|223965412|gb|EEF69690.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
           12042]
          Length = 261

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 7/190 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQL--LMVLDHVNDP 144
            P + V  + +DK    +  HQG+AL         +   L+ + + +L  +++LD + DP
Sbjct: 63  IPTQRVSRKELDKCC-MDTHHQGIALYCEDYKTVSVEEMLERIPSGKLGTIVILDELEDP 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GA+LR+  A   DG+I  K  S S ++ +AK ++GA+E +P   ++NLT  L+++  
Sbjct: 122 HNLGAVLRTCDAVGADGVILRKNRSVSLNSTVAKVSTGAIETVPVAMVANLTQTLKQLKE 181

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G+   G    + +   Q   +  +AL++G+EGKG+    +E    M  L M G I +LN
Sbjct: 182 KGYWVYGTDMRNAQDYRQPAFDTPVALVIGSEGKGISRLVKEECDVMLTLPMEGTISSLN 241

Query: 265 VSNAAAVALY 274
            S A AV LY
Sbjct: 242 ASVACAVLLY 251


>gi|313635070|gb|EFS01420.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
           N1-067]
          Length = 251

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 109/192 (56%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+ VP Q I+K+V    VHQG+A + A      LD + N+          ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVV--SGVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR +   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +
Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 229 LNASVAASLLLY 240


>gi|145628238|ref|ZP_01784039.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
           22.1-21]
 gi|145638336|ref|ZP_01793946.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
 gi|144980013|gb|EDJ89672.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
           22.1-21]
 gi|145272665|gb|EDK12572.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
 gi|309751478|gb|ADO81462.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2866]
          Length = 246

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 11/234 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A   +   LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKEFNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ + H+     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQHNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|323975479|gb|EGB70580.1| RNA methyltransferase [Escherichia coli TW10509]
          Length = 243

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A      L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|188577053|ref|YP_001913982.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521505|gb|ACD59450.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 255

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + G +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  GVAG-QVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S S +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240


>gi|78047165|ref|YP_363340.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035595|emb|CAJ23264.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 249

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240


>gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           JA-3-3Ab]
          Length = 354

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 25/248 (10%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQT 100
           ++PE   +YG  TV AAL +         AT N    L RL +                 
Sbjct: 90  AEPEQEIIYGRQTVLAALRS--------QATLNRVWVLPRLRYSPQFWSLLEEAKARGTV 141

Query: 101 IDKI-------VGKEAVHQGLALETAPL----LSPTLDAVRNS---QLLMVLDHVNDPHN 146
           ID++       +   A HQG+A +  P     L   ++  R S    +L+VLD + DPHN
Sbjct: 142 IDEVSLQRLNLLTAGANHQGIAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPHN 201

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RS  AF   G++  +R +   +A + K A+GAL  +P  R+ NL  AL+ +   G
Sbjct: 202 LGAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALSTLPVARVVNLNRALEYLKGQG 261

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G +S    P+        IAL++G+EG+G+   TQ     +  + + G  ++LN S
Sbjct: 262 FWVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNAS 321

Query: 267 NAAAVALY 274
            AA +ALY
Sbjct: 322 VAAGIALY 329


>gi|307150692|ref|YP_003886076.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7822]
 gi|306980920|gb|ADN12801.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7822]
          Length = 313

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 131/266 (49%), Gaps = 20/266 (7%)

Query: 24  RRNHRDYKKMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           RRN +    +    ++     SQ E   +YG H V  AL   +R+I ++      +++L 
Sbjct: 27  RRNPKPVTVVAPLASEPPEQPSQEEADLIYGRHPVLTALEG-TRQINRIWV----ISKLR 81

Query: 83  WDANLPHPFPVKTVPPQTIDKI-------VGKEAVHQGLALETAPL----LSPTLDAVRN 131
           +D+               ID++       +   A HQG+  + +P     L   ++  R 
Sbjct: 82  YDSRFHSLLTQAKANGTVIDEVSPHRLTQLTDGANHQGIVAQVSPYTYVELGDLIEQARA 141

Query: 132 SQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           S    ++++ D + DPHN+GAI+R+  A    G++  +R +   ++ + K A+GALEH+P
Sbjct: 142 STPAPVILIADGITDPHNLGAIIRTTEAIGAQGLVIPQRRAVGITSSVMKVAAGALEHLP 201

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R+ NL+ AL+++   GF   G  S   K L     +  + L++G+EG+GL   TQ   
Sbjct: 202 VARVVNLSRALEELKEAGFWIYGTMSQGSKALHTIDFSGAVGLVVGSEGEGLSLLTQRCC 261

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            ++  + + G   +LN S AAA+ALY
Sbjct: 262 DALISIPLAGKTPSLNASVAAAIALY 287


>gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Paulinella chromatophora]
 gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Paulinella chromatophora]
          Length = 526

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 37/255 (14%)

Query: 43  TSQPENLFLYGVHTVSAALNN--------------PSRKIFQLLATKNALARLDWDANLP 88
           +S+ E   ++G H+  AAL +               S K  QLL    A + L       
Sbjct: 185 SSETEKDLIWGRHSTQAALESGRPIHRIWCTSEVKSSSKFLQLLKKVKASSVL------- 237

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---------NSQLLMVLD 139
               V+ V    + +++G    HQG+AL+ A +   TLD  +          + LLM ++
Sbjct: 238 ----VEEVSWARLGQLIGGSG-HQGIALQMAAV--ETLDLTKLIEDCCHLGENPLLMAVE 290

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+GAI+RSA A    G+I  +R +   +  +AK A+GALEH+P  R+ NL  +L
Sbjct: 291 GLTDPHNLGAIVRSAEALGAHGLILPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSL 350

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +   G++ +GL+++    L +   N  + ++ G+EG GL   T+     +  + + G 
Sbjct: 351 DILKDKGYRIVGLATEGDVSLTEADLNGPLVIVTGSEGNGLSLLTRRYCDQLIRIPLRGA 410

Query: 260 IKALNVSNAAAVALY 274
             +LN S A+A+ LY
Sbjct: 411 TPSLNASVASALMLY 425


>gi|197941205|gb|ACH78322.1| putative tRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 240

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 99/171 (57%), Gaps = 7/171 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           AVHQG  L  +      LD +       ++ LL++LD + DPHN G+ILR+A A    G+
Sbjct: 71  AVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSILRTADATGVCGV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G +  +  P  +
Sbjct: 131 IIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG-TDVTGTPSYK 189

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +
Sbjct: 190 WNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILM 240


>gi|283834798|ref|ZP_06354539.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
           ATCC 29220]
 gi|291069044|gb|EFE07153.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
           ATCC 29220]
          Length = 243

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R   +F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQFL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +    ++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSEGAVHQGIIARVKPGRQYQENDLPDLIAALDQPFFLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLF 236


>gi|238795294|ref|ZP_04638873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           intermedia ATCC 29909]
 gi|238725379|gb|EEQ16954.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           intermedia ATCC 29909]
          Length = 246

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 28/243 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L+N  ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELE-----AAGLVIQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALET----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           D  V +  VHQG+               P L  ++D       L+VLD V DPHN+GA L
Sbjct: 59  DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVDM----PFLLVLDGVTDPHNLGACL 113

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A     +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G
Sbjct: 114 RSADAAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRLLQEHNVWIVG 173

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V
Sbjct: 174 TAGEADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGV 233

Query: 272 ALY 274
            L+
Sbjct: 234 CLF 236


>gi|241668957|ref|ZP_04756535.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877489|ref|ZP_05250199.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843510|gb|EET21924.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 247

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++          +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + + N      +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWVIGLAGEANDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240


>gi|289663083|ref|ZP_06484664.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289670071|ref|ZP_06491146.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 249

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240


>gi|238897532|ref|YP_002923211.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465289|gb|ACQ67063.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 247

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 26/242 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTID 102
            +YG H++ A L +   +  ++   +N       +L +    A L   F  +    Q +D
Sbjct: 4   IIYGFHSIKAFLEHHPERFLEIFILQNNDSYRLQSLVKELKSAGLSILFTSR----QYLD 59

Query: 103 KIVGKEAVHQGLALETA----------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
              G   VHQG+  +            P L  +LD    +  ++VLD + DPHN+GA LR
Sbjct: 60  AQTGG-GVHQGIMAKVCSAHQYQENELPALLNSLD----TPFVLVLDGITDPHNLGACLR 114

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A     +I  +  S   +A + K+ASGA E+IP IR++NL   L+ +  +    IG 
Sbjct: 115 SAEASGVQIVILPRDRSAPLNATVKKAASGAAENIPVIRVTNLARTLRVLKEYHLLIIGT 174

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++KK + +      +AL++G+E KGLR  T+E    +  + M G + +LNVS A  V 
Sbjct: 175 AGEAKKTVYEARMTGSMALVMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGVC 234

Query: 273 LY 274
           L+
Sbjct: 235 LF 236


>gi|290473408|ref|YP_003466274.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289172707|emb|CBJ79478.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 245

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTID 102
            +YG+H V A L+   ++  ++   K         L R   D  +     V+    Q +D
Sbjct: 4   IIYGIHAVKALLDREPQRFMEVYVLKGREDRRLTPLLRELEDIGIT----VQLANRQWLD 59

Query: 103 KIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + AVHQG+  +  P         P   +  +   L+VLD V DPHN+GA LR+A A
Sbjct: 60  TQT-ESAVHQGIIAKVKPGRQYQESDLPDFLSQLDRPFLLVLDGVTDPHNLGACLRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++
Sbjct: 119 AGVDAVIIPRDRSAQLNATTKKVACGAAENVPLIRVTNLARTLRLLQESNIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 179 THSLYQSKLTGPVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|310777971|ref|YP_003966304.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
           DSM 2926]
 gi|309747294|gb|ADO81956.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
           DSM 2926]
          Length = 236

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 83/140 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD V DP N GAI+RSA  F   GII  +R S   +  + K+++GA+EH+  I+++
Sbjct: 89  IVLVLDGVQDPRNFGAIVRSAEIFGVKGIIIPERNSVKINETVVKTSTGAIEHVDIIKVT 148

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+++A+QK+    +   G     KK    E   ++ AL++G EG G+R K +E    + +
Sbjct: 149 NISEAIQKLKKLDYWVYGAEGSGKKCYYDEKYPNRTALVMGGEGSGIRKKVKENCDILVN 208

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G I +LNVS A  + L
Sbjct: 209 IPMYGKINSLNVSVAGGILL 228


>gi|30248368|ref|NP_840438.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
           19718]
 gi|52783307|sp|Q82XD1|RLMB_NITEU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|30138254|emb|CAD84262.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
           19718]
          Length = 260

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 5/171 (2%)

Query: 111 HQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+A     L     L   L+ +    LL+VLD V DPHN+GA LR A AF    ++  
Sbjct: 69  HQGVAAHVTKLRRYATLEDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHAVVVP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  +   SA + K ASGA++ +P+  ++NL   L+++   G   +G ++D+   L+    
Sbjct: 129 KDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEMGLWIVGTAADAPDTLDSVTL 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +A +LGAE  G+R  T+E    +  + M G I++LNVS +A + L+ T
Sbjct: 189 TRPLAWVLGAEDGGMRRLTREACDLLVSIPMSGSIESLNVSVSAGICLFET 239


>gi|326796398|ref|YP_004314218.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
           mediterranea MMB-1]
 gi|326547162|gb|ADZ92382.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
           mediterranea MMB-1]
          Length = 253

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 50  FLYGVHTVSAALNNPSRKI----FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++YG+H V  AL     ++    FQ         RL       +    + VP + +D++ 
Sbjct: 6   WVYGIHAVENALTQQPERVKDVRFQEGRDDKKTQRL-MQLCKKNGVRFQVVPRKVLDQLF 64

Query: 106 GK---EAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            K     VHQG+  +           L   ++A+  + L+++LD + DPHN+GA LRSA 
Sbjct: 65  AKSKERVVHQGVVAQATMTKAKDEAELHKHVEALEETPLIIILDGITDPHNLGACLRSAD 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S   +A ++K A GA E +P   ++NL   ++K+   G    G + +
Sbjct: 125 AAGAHAVVMPKDKSAPLNATVSKVACGAAESMPVFAVTNLARTMKKLQDQGVWIFGTAGE 184

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L         A+++GAEG G+R  T+E    +  L M G++ +LNVS A  V LY
Sbjct: 185 ATDMLYDHDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLY 243


>gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 4b H7858]
 gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
 gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 4b H7858]
 gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
          Length = 251

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q I+K+VG    HQG+A + A      LD       A       ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVVG--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +
Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 229 LNASVAASLLLY 240


>gi|325925834|ref|ZP_08187204.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
 gi|325543769|gb|EGD15182.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
          Length = 252

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 7   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 65

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 66  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 125 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 184

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 185 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 243


>gi|39996562|ref|NP_952513.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983443|gb|AAR34836.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
           sulfurreducens PCA]
 gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 245

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDKI 104
            LYG+++V  AL   SR+ F+L  ++    R     L + A      PV+T   + + ++
Sbjct: 5   ILYGINSVMEALRG-SRRAFELFVSRETHDRRTEKLLAFAAE--RGVPVRTRDKRDLARL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157
            G +  HQG+AL         L+ +  S        L++VLD + DPHN+GA++RSA   
Sbjct: 62  CGTDH-HQGVALRVEGFAYAALEDIIASWQSSGEPGLILVLDGIQDPHNLGALIRSAACA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  +  +   +A + K ++GA E IP  +++N+  AL+ +   GF   G +  + 
Sbjct: 121 GAHGVIIPRDRAAGVTASVEKISAGATETIPVAQVTNVVQALETLKEEGFWAFGTADSAA 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L        + +++G EG+G+RP  ++    +  + + G + +LN S A  V L+
Sbjct: 181 SSLYSHDLTGNVVIVIGGEGEGVRPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLF 237


>gi|258513621|ref|YP_003189843.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 246

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 101/189 (53%), Gaps = 6/189 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            PV+ V    ++KI   EAVHQG+A      E   L      A      +++LD + DPH
Sbjct: 50  IPVQEVDRTALEKI-SAEAVHQGVAAYAAAKEYVELEDILARAGEQEPFIIMLDEITDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R+A A    G++ T+R S   + V+AKS++GA+E++P  R++NL  +++ +   
Sbjct: 109 NLGAIIRTADAAGVHGVVVTRRRSALLTPVVAKSSAGAVEYVPVARVTNLVQSIKILQEN 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G   +  K   +   +  IA+++G EGKGL    +E    +  L M G I +LN 
Sbjct: 169 GIWVAGADMEGDKVYWEAPLSGPIAIVIGGEGKGLGRLVKEKCDFLVRLPMQGKISSLNA 228

Query: 266 SNAAAVALY 274
           S A A+  Y
Sbjct: 229 SVATALLAY 237


>gi|153834959|ref|ZP_01987626.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
 gi|148868589|gb|EDL67677.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
          Length = 247

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L     +  +    K    R D D  +P  +   V  V  Q +    
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+   ++ A  L+   +D +     S LL+VLD V DPHN+GA LR+
Sbjct: 59  LDDKANG--ANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G +
Sbjct: 117 ADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L
Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|300769739|ref|ZP_07079621.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300492647|gb|EFK27833.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 261

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q +D++    A HQG+A+  A     T+D       A   +   ++LD++ DPH
Sbjct: 64  VQYVPKQKLDRLT-DNANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPH 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR +   ++ +AK+++GA+EH+   R++NL   ++++   
Sbjct: 123 NLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEA 182

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G   +      Q   +  + LI+G EGKG+ P  +++   M  + M G +++LN 
Sbjct: 183 GLWIFGTDMNGTD-YRQWDASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNA 241

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 242 SVAASLLIY 250


>gi|209523281|ref|ZP_03271837.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
           CS-328]
 gi|209496432|gb|EDZ96731.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
           CS-328]
          Length = 304

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 123/247 (49%), Gaps = 15/247 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-----LATKNALARLDWDANLPHPFPVK 94
           S  T  PE   +YG HTV AAL N  R + ++     L +      L  +A       V 
Sbjct: 46  SAETEPPEEDLIYGRHTVLAALEN-GRSLNRVWVISQLRSDTRFQPLLQEAKAKGAI-VD 103

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR--NSQ-LLMVLDHVNDPHNI 147
               Q +D+I  + A HQG+  +  P     L+  +   +  NSQ +L+ +D + DPHN+
Sbjct: 104 GASYQRLDQIT-RGANHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVDGITDPHNL 162

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+A A    G+I  +R +   +A + K A+GALE  P  R+ NL  +L ++ S GF
Sbjct: 163 GAIVRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRSLTELKSAGF 222

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G  +   +PL        I L++G+EG+GL     E    +  + + G I +LNVS 
Sbjct: 223 WIYGTVAGEFQPLYNANLTGAIVLVVGSEGEGLSHAIAENCDVLLSIPLQGTIPSLNVSV 282

Query: 268 AAAVALY 274
           A  +ALY
Sbjct: 283 ATGMALY 289


>gi|16763188|ref|NP_458805.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144667|ref|NP_808009.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213021981|ref|ZP_03336428.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213417716|ref|ZP_03350838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213648977|ref|ZP_03379030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|52783319|sp|Q8Z182|RLMB_SALTI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|25316741|pir||AI1049 probable tRNA/rRNA methyltransferase (EC 2.1.1.-) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505496|emb|CAD06846.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140306|gb|AAO71869.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 243

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 14/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKE 108
            +YG+H V A L     +  +    K    R D     L H    + V  Q  ++    E
Sbjct: 4   MIYGIHAVQALLERAPERFQEAFILKG---REDKRLLPLIHALESQGVVIQLANRQYLDE 60

Query: 109 ----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 61  KSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|85057748|ref|YP_456664.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789853|gb|ABC65585.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 235

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 5/231 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG + +  A+    RKI+QL   +     L       H    + V  + +  +  K+
Sbjct: 1   MIIYGKNPIKEAIK-AQRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFLYDLT-KQ 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
             HQG+A          LD   +S   Q  ++LD +NDPHN+GAILR+  A + DG+I +
Sbjct: 59  KTHQGIAANVCDYTFYDLDTYLDSTKFQKFLILDAINDPHNLGAILRTVEACALDGVIMS 118

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K+     ++ +AK + GALE+     ++NL   + K+       +G  S+S +   Q  K
Sbjct: 119 KKNQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIPK 178

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           N  + +I+G EG G+R   ++    +  + M G I +LNVS AAA+ +Y T
Sbjct: 179 NSSLGIIVGNEGTGIRHLLKKQCDLLVKIPMYGKINSLNVSVAAALMIYST 229


>gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
           Ellin185]
 gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
           Ellin185]
          Length = 324

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 133/285 (46%), Gaps = 44/285 (15%)

Query: 21  AKLRRNHRDYKKMQ--------------SFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           A+ R NH+ YK  Q              S  ++ R +S+     + G ++V  AL     
Sbjct: 41  AEERPNHKAYKSAQRSGAAKNAPNARRSSGARRDRTSSE----IIAGRNSVLEAL----- 91

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVK--------TVPPQTIDKIVGKEAVHQGLALET 118
           ++    AT    +R+D D  +     +           P   +D++    AVHQGLAL+ 
Sbjct: 92  RVGVPAATLYVASRIDSDDRVRETLKIAQEQGVAMLETPRGELDRLT-DGAVHQGLALQV 150

Query: 119 AP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            P        L+ P L     + L++ LD + DP N+GAI+RS  AF   G++  +R S 
Sbjct: 151 PPYEYAHPSDLIDPELP---GTPLVVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSA 207

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKI 229
             +A   K+++GA   IP  + SNLT AL++    GF  IGL  D    L   E+ +  +
Sbjct: 208 GMTASAWKTSAGAAARIPVAQASNLTAALKEFKKAGFFVIGLDMDGDVDLPGLELADRPL 267

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +++G+EGKGL     ET   +  + M   +++LN   A +V LY
Sbjct: 268 VVVVGSEGKGLSRLVSETCDQIVSVPMSSAVESLNAGIATSVTLY 312


>gi|312109242|ref|YP_003987558.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y4.1MC1]
 gi|311214343|gb|ADP72947.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y4.1MC1]
          Length = 245

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145
           V+ VP + +D++V  E  HQG+  + A      +D +  R S+       ++LD + DPH
Sbjct: 48  VQYVPKKKLDQMV--EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPH 105

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR S   +A +AK+++GA+E+IP  R++NL   + ++   
Sbjct: 106 NLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKER 165

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +G  + +K+          +AL++G+EGKG+     E    +  L M G + +LN 
Sbjct: 166 GVWIVGTDAKAKEDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNA 225

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 226 SVAASLLMY 234


>gi|295098333|emb|CBK87423.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 243

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 14/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDKIVGKE 108
            +YG+H V A L     +  ++   K    R D     L H    + V  Q  ++    E
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILK---GREDKRLMPLIHALEAQGVVIQLANRQYLDE 60

Query: 109 ----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A   +   ++LD V DPHN+GA LRSA A  
Sbjct: 61  KSEGAVHQGIIARVKPGRQYQENDLPDLIAGLENPFFLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|295401939|ref|ZP_06811902.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976069|gb|EFG51684.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 245

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145
           V+ VP + +D++V  E  HQG+  + A      +D +  R S+       ++LD + DPH
Sbjct: 48  VQYVPKKKLDQMV--EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPH 105

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR S   +A +AK+++GA+E+IP  R++NL   + ++   
Sbjct: 106 NLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKER 165

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +G  + +K+          +AL++G+EGKG+     E    +  L M G + +LN 
Sbjct: 166 GVWIVGTDAKAKEDYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNA 225

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 226 SVAASLLMY 234


>gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 246

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V+A L  +P+R +           +LL   N L RL           ++ +
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150
             + +D    + A HQGL     P   L    LD   A     LL+VLD V DPHN+ A 
Sbjct: 55  SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLXAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  
Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACG 233

Query: 271 VALY 274
           + L+
Sbjct: 234 ICLF 237


>gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
 gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
          Length = 249

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 104/189 (55%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145
           V+ VP + +D+++G E  HQG+    A      +D +  R ++       +VLD V DPH
Sbjct: 50  VQHVPKRKLDQLIGHEN-HQGVVASVAAYEYAEMDDLFQRAAEKGEEPFFIVLDEVEDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A    G+I  KR +   +  +AK+++GA+E++P +R++NL   ++ +   
Sbjct: 109 NLGSILRTADAAGVHGVIIPKRRAVGLTQTVAKASTGAIEYVPVVRVTNLARTMEDLKKR 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   IG  +   +       +  IAL++G+EGKGL    +E    +  + M G + +LN 
Sbjct: 169 GLWFIGTDAKGSEDYRGAAYDMPIALVIGSEGKGLSRLVREKCDFLVRIPMVGQVTSLNA 228

Query: 266 SNAAAVALY 274
           S A ++ +Y
Sbjct: 229 SVATSLLMY 237


>gi|157147848|ref|YP_001455167.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter koseri
           ATCC BAA-895]
 gi|157085053|gb|ABV14731.1| hypothetical protein CKO_03652 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R   +F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQDVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  ++  L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSEGAVHQGIIARVKPGRQYQENDLPDLIAKFDNPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLFQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
 gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
          Length = 340

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +VHQG+AL+TA   +  L+A+ +         LL+ LD + DPHN+GA++RSA A    G
Sbjct: 36  SVHQGIALQTAAADTLDLNALIDGCSELGEPPLLLALDGITDPHNLGAVVRSAEAMGAHG 95

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   +   AK A+GA+EH+P  R+ NL  +L+K+   G++ IGL+++    L 
Sbjct: 96  LVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSLEKLKDSGYRVIGLAAEGDVTLM 155

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  + L+ G+E +GL   T+     +  + + GI  +LN S A A+ +Y
Sbjct: 156 DVDLDGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRGITPSLNASVATAMCVY 208


>gi|28377488|ref|NP_784380.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254555718|ref|YP_003062135.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|308179699|ref|YP_003923827.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270320|emb|CAD63221.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254044645|gb|ACT61438.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|308045190|gb|ADN97733.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 255

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q +D++    A HQG+A+  A     T+D       A   +   ++LD++ DPH
Sbjct: 58  VQYVPKQKLDRLT-DNANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPH 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR +   ++ +AK+++GA+EH+   R++NL   ++++   
Sbjct: 117 NLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEA 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G   +      Q   +  + LI+G EGKG+ P  +++   M  + M G +++LN 
Sbjct: 177 GLWIFGTDMNGTD-YRQWDASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNA 235

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 236 SVAASLLIY 244


>gi|261342841|ref|ZP_05970699.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
           cancerogenus ATCC 35316]
 gi|288314883|gb|EFC53821.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 243

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---MPLIHALEAQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  ++   ++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSEGAVHQGIIARVKPGRQYQENDLPDLIAGLDNPFFLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  +  S   +A   K A GA E++P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|21242319|ref|NP_641901.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|52783317|sp|Q8PM64|RLMB_XANAC RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21107751|gb|AAM36437.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 249

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAAGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240


>gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           metalliredigens QYMF]
          Length = 248

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 106/190 (55%), Gaps = 10/190 (5%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPH 145
           V+ V  Q +D+I    A HQG+  + A      ++ +  N+Q       +++LD + DPH
Sbjct: 50  VQYVERQKLDQISESHA-HQGVIAQVAAYEYSDVETILENAQKKGKSPFILILDEIMDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A   DGII  KR +   +AV+AK+++GA+E++P  ++SN++  + K+   
Sbjct: 109 NLGSIIRTADAVGVDGIIIPKRRAVGLTAVVAKTSAGAIEYVPVAKVSNISQTIDKLKEK 168

Query: 206 GFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G    G     K+   E + K   +AL++G EG G+    +E    +  L M G + +LN
Sbjct: 169 GVWVAGADMKGKQLHFEADFKG-ALALVIGGEGSGISRLVKEKCDFLVKLPMAGQVSSLN 227

Query: 265 VSNAAAVALY 274
            S AAAV +Y
Sbjct: 228 ASVAAAVLMY 237


>gi|167626521|ref|YP_001677021.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596522|gb|ABZ86520.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 248

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++          +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + + N      +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEANDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240


>gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium
           sibiricum 255-15]
          Length = 254

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 32/245 (13%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL----------LATKNALARLDWDANLPHPFPVKTVPPQ 99
           FLYG + V  AL +  R++ +L          LA  +A+A+   +A +      + VP  
Sbjct: 11  FLYGRNPVLEALRS-GREMNKLFIQEGQQKGPLAVIHAMAK---EAGVQ----TQIVPRS 62

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            +  + G +  HQG+    A      LD +         + L+++LD + DPHN+G+ILR
Sbjct: 63  KLHGLTGSDN-HQGVVAAVAAYEYAELDDIFALAEKKDETPLMILLDELEDPHNLGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  KR S   + V+AK+++GA+EHIP +R++NLT  ++ +   G   +G 
Sbjct: 122 TADAVGAHGIIIPKRRSVGLTQVVAKASTGAIEHIPVVRVTNLTRTMEDLKKKGIWFVGT 181

Query: 213 ---SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               SD  + L+  +    + +++G+EGKG+    +E    + HL M G + +LN S AA
Sbjct: 182 DARESDDYRTLDGTM---PLGIVIGSEGKGMSRLVREKCDFLVHLPMAGHVTSLNASVAA 238

Query: 270 AVALY 274
           ++ LY
Sbjct: 239 SLLLY 243


>gi|314932755|ref|ZP_07840124.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
           C87]
 gi|313654436|gb|EFS18189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
           C87]
          Length = 249

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D    SQ        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFL--SNAPHQGVAALVAPYEYEDFDEFLQSQKNKDGFSTILILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   
Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKEN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  + +         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEASNATDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
 gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
          Length = 335

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 20/242 (8%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPP 98
           +N  +YG H V +AL N  R + ++  T     RL +D            +   +  V  
Sbjct: 80  DNDIIYGRHPVLSALQN-QRGLNRIWVTP----RLRYDPRFHNLILQAKDNGAVIDEVDT 134

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152
           + +D+I   +A HQG+A + AP     L  +          +++V D + DPHN+GAI+R
Sbjct: 135 KRLDQIT-DQANHQGIAAQIAPYSYIDLYELIAQAKTVTDPVIVVADSITDPHNLGAIIR 193

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    G++  +R +   ++ + K A+GALE+ P  R+ NL  AL+ +   GF   G 
Sbjct: 194 TAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLGRALEDLKEAGFWIYGT 253

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           ++   +PL        I L++G+EG+GL   TQ +   +  + + G   +LN S AA +A
Sbjct: 254 AAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNASVAAGMA 313

Query: 273 LY 274
           LY
Sbjct: 314 LY 315


>gi|328676598|gb|AEB27468.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
           novicida Fx1]
          Length = 248

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K     T  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDTFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240


>gi|260892311|ref|YP_003238408.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
           KC4]
 gi|260864452|gb|ACX51558.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
           KC4]
          Length = 254

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 7/230 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVG 106
            +YG H V  AL    R ++++L  +        +          PV+ VP + +D++  
Sbjct: 10  LVYGRHAVKEALL-AGRSLYKILVARGLGGAFFHELRSLAASRSVPVQIVPAEALDRLTA 68

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +  VHQG     +P    +LD +  +    L+VL ++ DP N+GAILR+A A   +G+I 
Sbjct: 69  R-GVHQGCVALVSPYNYASLDEILATHPSCLLVLAYITDPRNLGAILRTAAAVGVEGVII 127

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             R +   +A   K+++G  EH+   R++NL   L+ +   GF  +G  +D+K  L +  
Sbjct: 128 PSRRAAGLTAEALKASAGGAEHVKVARVTNLAQTLRYLKEQGFWVLGAEADAKVSLWEAE 187

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            N+ + +++G E  GL    +     +  +     +  LN S AAAV LY
Sbjct: 188 WNEPLVVVIGGEDTGLGKVVRRECDVLVRIPTTAKMPCLNASVAAAVILY 237


>gi|320638938|gb|EFX08584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. G5101]
          Length = 243

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H      V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESLGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|304414079|ref|ZP_07395447.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
           insecticola LSR1]
 gi|304283293|gb|EFL91689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
           insecticola LSR1]
          Length = 251

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 115/238 (48%), Gaps = 14/238 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L     ++ ++   K+      R    A       V+    Q +D  V 
Sbjct: 4   MIYGIHAVKALLEKEPHRLLEIFLQKDRHDRRLRSLISAIESEGLQVQMAKRQWLDNQVN 63

Query: 107 KEAVHQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E VHQG+  +              L   L A +   LL++LD V DPHN+GA LRSA A
Sbjct: 64  HE-VHQGIVAKIRQGRQYQENDLLQLVEKLLADKKDPLLLILDGVTDPHNLGACLRSADA 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K +S   +A + K ASGA E +P I ++NL   L+ +       +G + D+
Sbjct: 123 AGVHAVIVPKDHSAPLNATVKKVASGAAETVPLIVVTNLARTLRLLKEHNIWIVGTAGDA 182

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ L Q      +AL++G+EG+G+R  T+E    +  + + G + +LNVS A  V L+
Sbjct: 183 EQNLYQWKIQQSMALVMGSEGQGMRRLTREHCDELISIPLAGSVSSLNVSVATGVCLF 240


>gi|197287185|ref|YP_002153057.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           HI4320]
 gi|194684672|emb|CAR46614.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           HI4320]
          Length = 247

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L  +P+R  +++ L   ++        A       V+    Q +D    
Sbjct: 5   IIYGIHAVKALLERDPTRFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQT- 63

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA A    
Sbjct: 64  EGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K A GA E +P IR++NL   L+ +       +G + ++   L
Sbjct: 124 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADHTL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 237


>gi|58336688|ref|YP_193273.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|58254005|gb|AAV42242.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
          Length = 250

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 9/193 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145
           V++VP   +D++V     HQGL L  +      L   LD          L++LD + DPH
Sbjct: 54  VQSVPKNKLDRLV-DGGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR++   ++V+AK+++GA++++P  R++NL    +++   
Sbjct: 113 NLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G         E   K  K  LI+G EGKG+ P  ++       L M G +++LN 
Sbjct: 173 GYWFFGTDMAGVDYREWNAKG-KTVLIIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231

Query: 266 SNAAAVALYITQN 278
           S A  V LY   N
Sbjct: 232 SVATGVLLYQAYN 244


>gi|37528393|ref|NP_931738.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|52783299|sp|Q7MYU6|RLMB_PHOLL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|36787831|emb|CAE16946.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 244

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFP-----VKTVPPQTIDK 103
            +YG+H V A L    ++  ++   K    R D     L H        ++    Q +D 
Sbjct: 4   IIYGIHAVKALLERDPQRFIEVYVLK---GREDRRLTPLIHALESIGMTIQLANRQWLDN 60

Query: 104 IVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA A 
Sbjct: 61  QT-EGAVHQGIIAKVKPGRQYQENDLPDLLAQVETPFLLVLDGVTDPHNLGACLRSADAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +A   K A GA E +P IR++NL   L+ +  +    +G + ++ 
Sbjct: 120 GVHAVIIPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEYNIWVVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 180 HTLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMVGSVSSLNVSVATGVCLF 236


>gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1]
          Length = 246

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 13/236 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           + LYG + V  AL  P+ ++ +++     ++A AR   D        V+ +P   +D++V
Sbjct: 1   MLLYGRNPVLEAL--PAGRVAEVVLARGVEDAFARQVQDLARDAGVRVRWLPRIELDQLV 58

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPHNIGAILRSAVAFS 158
           G    HQG+  E   L   T+D +        + LLMVL D V DP N GAI+RSA    
Sbjct: 59  GTTQ-HQGVVAEVEELQWATVDDILDRAEASGAPLLMVLLDGVTDPRNFGAIIRSAEVLG 117

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +R S   S V+AK+A+GA  ++P  +  NL   + ++ + G    G + ++ +
Sbjct: 118 AHGVVVEERRSAPLSPVVAKTAAGATAYLPVAQTKNLPRLIDQLKADGVWVYGAAGEAAQ 177

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +   + K AL++GAEG+G+R   +E    +  + + G +++LN S AA + LY
Sbjct: 178 DVTRTDFSGKAALVIGAEGEGMRRLVREKCDVLVSIPVRGQVQSLNASVAAGILLY 233


>gi|239636929|ref|ZP_04677927.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
           L37603]
 gi|239597477|gb|EEQ79976.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
           L37603]
          Length = 248

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFL--STAPHQGVAALVAPYEYADFDQFLKQQKEKDGLSTVIILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S S +  +AK+++GA++H+P IR++NL   + ++ S 
Sbjct: 108 NLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKSN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEANNATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|152995437|ref|YP_001340272.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150836361|gb|ABR70337.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MWYL1]
          Length = 255

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 116/241 (48%), Gaps = 19/241 (7%)

Query: 50  FLYGVHTVSAALNNPSRKI----FQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDK 103
           ++YG+H V  ALN    +I    FQ         RL     L     V+   V  + +D+
Sbjct: 6   WIYGIHAVENALNQQPERIKEVRFQEGRDDKKTQRL---MQLCKANKVRHSVVARRDLDQ 62

Query: 104 IVG---KEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +        VHQG+   TA         L   +  +  + L+++LD V DPHN+GA LRS
Sbjct: 63  LFTANKDRVVHQGVVAYTAMNKAGNEADLHSLVAGLEETPLIIILDGVTDPHNLGACLRS 122

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     ++  K  S   +A ++K A GA E IP   ++NL   ++K+   G    G +
Sbjct: 123 ADAAGAHAVVMPKDNSAPLNATVSKVACGAAESIPVYAVTNLARTMKKLQDQGVWIFGTA 182

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ + + ++      A+++GAEG G+R  T+E    +  L M G++ +LNVS A  V L
Sbjct: 183 GEATQTIYEQDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCL 242

Query: 274 Y 274
           Y
Sbjct: 243 Y 243


>gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 329

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 174 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 233

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+ ++GL       + E   + D + ++LG+EG GL    +E   S+A
Sbjct: 234 NLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVREACDSIA 293

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M  ++++LN S AA + LY
Sbjct: 294 GIPMSNMVESLNASVAAGITLY 315


>gi|187730319|ref|YP_001882871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii CDC
           3083-94]
 gi|187427311|gb|ACD06585.1| RNA methyltransferase, TrmH family, group 3 [Shigella boydii CDC
           3083-94]
          Length = 243

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A     P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALQERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|206580783|ref|YP_002240863.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
           342]
 gi|290512258|ref|ZP_06551625.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
 gi|206569841|gb|ACI11617.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
           342]
 gi|289775253|gb|EFD83254.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
          Length = 243

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
            +YG+H V A L     +  ++   K    R D    LP  H    + V  Q  ++    
Sbjct: 4   MIYGIHAVQALLERAPERFQEVYILKG---REDKRL-LPLIHALEAQGVVIQVANRQFLD 59

Query: 108 E----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A 
Sbjct: 60  EKSEGAVHQGIIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++ 
Sbjct: 120 GVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 180 HTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|70727476|ref|YP_254392.1| hypothetical protein SH2477 [Staphylococcus haemolyticus JCSC1435]
 gi|90110723|sp|Q4L3J1|TRMHL_STAHJ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|68448202|dbj|BAE05786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 249

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D    SQ        +++LD + DPH
Sbjct: 50  VQTVPKSKLDNLA--NAPHQGVAALIAPYEYADFDQFIQSQKDKEGLSTVVILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA++H+P +R++NL   + ++   
Sbjct: 108 NLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEH 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G  +D+         +  +A+++G+EG+G+    ++       + M G + +LN 
Sbjct: 168 GYWVAGAEADNATDYRDMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|296268496|ref|YP_003651128.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
           DSM 43833]
 gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
           DSM 43833]
          Length = 322

 Score =  105 bits (261), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 9/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVND 143
            P+  V    +D++ G  AVHQG+ LE  P      D +  +        L++ LD V D
Sbjct: 120 IPMVEVSRDRLDQLTGG-AVHQGIGLEIPPYEYAHPDDLVEAAHQAGEVPLIVALDGVTD 178

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAI RSA AF   GI+   R S   ++   K+++G L  +P  R SNLT  L+   
Sbjct: 179 PRNLGAIARSAAAFGAHGIVVPSRRSVGVTSGAWKTSAGTLATLPVARASNLTQTLKAYR 238

Query: 204 SWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G   +GL  D+K+ + +  +  + + L++G+EGKGL    +ET   +A + M   +++
Sbjct: 239 KEGLFVVGLDGDAKEEIADNTLLTEPLVLVVGSEGKGLSRLVRETCDMLARIPMGERVES 298

Query: 263 LNVSNAAAVALY 274
           LN   AA +ALY
Sbjct: 299 LNAGVAAGIALY 310


>gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
           L2-32]
 gi|154083727|gb|EDN82772.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
           L2-32]
          Length = 330

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+ ++GL       + E   + D + ++LG+EG GL    +E   S+A
Sbjct: 236 NLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVREACDSIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M  ++++LN S AA + LY
Sbjct: 296 GIPMSNMVESLNASVAAGITLY 317


>gi|319790074|ref|YP_004151707.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
 gi|317114576|gb|ADU97066.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
          Length = 239

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 11/233 (4%)

Query: 49  LFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + +YGV+ V+ AL    P  KIF     K+    L+  A       VKT   +  +  + 
Sbjct: 1   MVIYGVNPVAEALRAGYPIMKIFVEKNFKDREKVLE-TARQAGIKVVKTTKQKLTE--LA 57

Query: 107 KEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K   HQG+      +E  P       AV  +  L+ LD + DPHN+GAI RSA AF   G
Sbjct: 58  KTTKHQGIVALVSPVEPKPFEELAQKAVEENGYLLFLDRIEDPHNLGAIFRSADAFKVTG 117

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+  +  S + +  +AK+++GAL ++P+  +++   AL++    G   +GL +   KPL 
Sbjct: 118 IVIPRDRSVTVTETVAKTSTGALFYVPFAVVNSFVTALREFKEMGGWLVGLEAGG-KPLS 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      + L+ G+EG+GL   T +    +  + M G + +LNVSNA A+ LY
Sbjct: 177 KFEFPFPLGLVAGSEGRGLSRSTVKQLDELVEIEMGGHVNSLNVSNAVAIGLY 229


>gi|282852715|ref|ZP_06262057.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           224-1]
 gi|282556457|gb|EFB62077.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           224-1]
          Length = 275

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 19/239 (7%)

Query: 50  FLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           F+YG H     L     N   K+F     +   A   +         V+  P   +D++V
Sbjct: 8   FVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQMV 67

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E  HQGL L  AP     LD + +          +++LD + DPHN+G+ILR+  A  
Sbjct: 68  NHEN-HQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDATG 126

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSD 215
            D +I  KR +   ++V+AK+++GA++++P  R++NL   T  L+K   W F T     D
Sbjct: 127 VDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEGED 186

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +K       N K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 187 YRK----WNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|212709961|ref|ZP_03318089.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
           30120]
 gi|212687370|gb|EEB46898.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
           30120]
          Length = 245

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 111/235 (47%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105
            +YG+H V A L    ++I ++   K    R      + H      +  Q  ++      
Sbjct: 4   IIYGIHAVKALLERSPQRIKEVYILKGREDRRLMP--IVHEIEALGIVVQVANRQWMDAQ 61

Query: 106 GKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + AVHQG+     P         P L     S  L++LD V DPHN+GA LRSA A   
Sbjct: 62  TEGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E++P IR++NL   L+ +  +    +G + ++   
Sbjct: 122 HAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADHN 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 182 LYQSKLTGSVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|91788889|ref|YP_549841.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91698114|gb|ABE44943.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas sp. JS666]
          Length = 264

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 82/141 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY  ++
Sbjct: 117 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAAGINATVAKVASGAAETMPYFMVT 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   L ++       IG S D+ K +        +AL+LGAEG+G+R  T++T   +  
Sbjct: 177 NLARTLGELKERNIWCIGTSDDAPKTIYDVDLKGPVALVLGAEGEGMRQLTRKTCDELVS 236

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LNVS A+ V LY
Sbjct: 237 IPMRGAVESLNVSVASGVCLY 257


>gi|16272800|ref|NP_439020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae Rd KW20]
 gi|145632229|ref|ZP_01787964.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
 gi|145634717|ref|ZP_01790425.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
 gi|148826495|ref|YP_001291248.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae PittEE]
 gi|229844738|ref|ZP_04464877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|229845912|ref|ZP_04466024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|260579951|ref|ZP_05847781.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae RdAW]
 gi|319897646|ref|YP_004135843.1| 23S rRNA (gm2251)-methyltransferase [Haemophilus influenzae F3031]
 gi|329122866|ref|ZP_08251438.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           aegyptius ATCC 11116]
 gi|1176354|sp|P44906|RLMB_HAEIN RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|144987136|gb|EDJ93666.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
 gi|145267883|gb|EDK07879.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
 gi|148716655|gb|ABQ98865.1| hypothetical protein CGSHiEE_07740 [Haemophilus influenzae PittEE]
 gi|229810916|gb|EEP46633.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|229812452|gb|EEP48142.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|260093235|gb|EEW77168.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae RdAW]
 gi|317433152|emb|CBY81526.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3031]
 gi|327472130|gb|EGF17568.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           aegyptius ATCC 11116]
          Length = 246

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A  L+   LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +      W    +G + ++ 
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|297538456|ref|YP_003674225.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297257803|gb|ADI29648.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera sp. 301]
          Length = 251

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 10/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L+G H V + L      + ++L  ++ + AR+     +     V+T  V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHGASVQEILIDRDRMDARMKDLLKMAEAAGVRTMEVERSRLDGMAG 65

Query: 107 KEAVHQGLALETA--PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+       P+    +  +  S L      ++LD V DPHN+GA LR A A   
Sbjct: 66  MNGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLILDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E +P+I ++NL   ++++   G   IG + D+   
Sbjct: 126 HAVIAPKDRAVGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVIGTTMDAPST 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     +  IA++LGAEG G+R  T ET  ++  + M G +++LNVS A+ + LY
Sbjct: 186 LINTKLDGPIAIVLGAEGDGIRRLTAETCDALMTIPMYGSVESLNVSVASGICLY 240


>gi|238021416|ref|ZP_04601842.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
 gi|237868396|gb|EEP69402.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
          Length = 250

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +N   A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSIVELYVLENKNDARTREVLEKAAAEKVRVHFADMNRLNTI-A 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +R    L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G   D +  L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMDGEADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + +A ++G EG G+R  T+E   ++  + M G ++++N+S +A + +  T+
Sbjct: 185 HYDIPENVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVMAETR 240


>gi|288941318|ref|YP_003443558.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288896690|gb|ADC62526.1| RNA methyltransferase, TrmH family, group 3 [Allochromatium vinosum
           DSM 180]
          Length = 247

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 84/153 (54%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L+  LD +     L++LD V DPHN+GA LR+A A     +I  K  +   + V+ K AS
Sbjct: 87  LAALLDRLDVPPFLLLLDEVQDPHNLGACLRTAEAVGVQAVIAPKDNAVGLTPVVCKVAS 146

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA E +PY++++NL   +  +   G   IG + ++   L        + L++GAEG GLR
Sbjct: 147 GAAETLPYVQVTNLARVMDALKERGIWLIGAAGEASDELYAADLTGPLGLVMGAEGSGLR 206

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             T+E    +  L M G +++LNVS AA V LY
Sbjct: 207 RLTRERCDRLVRLPMCGQVESLNVSVAAGVCLY 239


>gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7425]
          Length = 387

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 18/248 (7%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           ++ ++  ++  +YG HT+ AAL +  R++ ++        +L +D               
Sbjct: 118 TKESTDGDSDLIYGRHTLLAALES-ERQLNRIWVVN----QLRYDPRFHSLLLQAKAAGV 172

Query: 100 TIDKI-------VGKEAVHQGLALETAPLLSPTLDAV-RNSQ-----LLMVLDHVNDPHN 146
            ID++       +   A HQG+A + AP     LD +  N Q     +L+  D + DPHN
Sbjct: 173 VIDEVDYLRLDQITAHAKHQGIAAQVAPYSYLELDTLLENIQGLDHPVLLAADGITDPHN 232

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+R+A A    G++  +R +   ++ +AK A+GALEH    R+ NL  AL+++ + G
Sbjct: 233 LGAIIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVVNLNQALEQLKAAG 292

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G+++ + KP+     +  + L++GAEG GL    Q     +  + + G   +LN S
Sbjct: 293 FWIYGMAATAAKPIYSVEFSGPVVLVVGAEGTGLSLLAQRYCDQLVSIPLLGKTPSLNAS 352

Query: 267 NAAAVALY 274
            A  +ALY
Sbjct: 353 VATGMALY 360


>gi|145637023|ref|ZP_01792687.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
 gi|145269881|gb|EDK09820.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
          Length = 245

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A  L+   LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +      W    +G + ++ 
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|309973649|gb|ADO96850.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2846]
          Length = 245

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A  L+   LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +      W    +G + ++ 
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRNLQQNHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 315

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 142/290 (48%), Gaps = 28/290 (9%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64
           K  ++++  K  H AKL R  R+           RH  +   + + G + V   L+   P
Sbjct: 40  KAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVVECLHAKVP 87

Query: 65  SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121
           +  ++ +  T+N  ARL     + +    P+  +    +D++ G   +HQG+ L+  P  
Sbjct: 88  ATSLYIVQGTRND-ARLSEAVAIANSRNIPILEIQRHEMDRMTGN-GMHQGIGLQIPPYK 145

Query: 122 ---LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                  +D  +++    + ++LD++ DP N+GA++RS  AF   G+I  +R S S +AV
Sbjct: 146 YADFHELMDRAKDAGEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAV 205

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILG 234
             ++++G    +P  R++N+T  +Q+    G+Q +GL +  +  L+      D + +++G
Sbjct: 206 AWRTSAGTAARLPVARVTNVTRTVQEFQQAGYQVVGLDAGGEHTLDTYTGGKDPVVIVIG 265

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
           +EGKG+    +E    +  + M   +++LN S AA   L  +  Q   AK
Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTAWVESLNASVAAGAVLSEFARQRRAAK 315


>gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
           17836]
 gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
           17836]
          Length = 320

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 97/188 (51%), Gaps = 11/188 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           VP Q +D++     VHQGLA++  P        LL    DA     L++ LD V DP N+
Sbjct: 127 VPRQELDRLT-SNGVHQGLAIQIPPYEYAHPDDLLRAAYDA-DQVPLIVALDGVTDPRNL 184

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA AF   G++  +R + S SA   K+++GA   IP  R +NL  AL+     G 
Sbjct: 185 GAITRSAAAFGAHGVLVPERRAASVSASAWKTSAGAAARIPVARATNLNRALKSYKDAGL 244

Query: 208 QTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IGL  D +  L + +   D I L++G+EGKGL    +E    +  + M    ++LN  
Sbjct: 245 FVIGLDMDGEVELPDLQAATDPIVLVVGSEGKGLARLVRENCDLIVSIPMTSATESLNAG 304

Query: 267 NAAAVALY 274
            A  VALY
Sbjct: 305 IATGVALY 312


>gi|94500543|ref|ZP_01307074.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
           RED65]
 gi|94427333|gb|EAT12312.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
           RED65]
          Length = 246

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+     P+ S         LD++     L+VLD V DPHN+GA LR+A A    G+I
Sbjct: 67  HQGVIARAKPVQSKDENQLLQQLDSLDEPAFLLVLDSVTDPHNLGACLRTADAAGVHGVI 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +A ++K A GA E +P+ +++NL   ++++   G    G + ++ + + + 
Sbjct: 127 APKDKAVGLTATVSKVACGAAESVPFYQVTNLARTMKELQERGIWLYGTAGEASESVFKT 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                IA+++GAEGKGLR  T+E    + ++ M G + +LNVS A  V L+
Sbjct: 187 DLKGPIAIVMGAEGKGLRRLTREACDHLINIPMAGDVSSLNVSVATGVCLF 237


>gi|288937520|ref|YP_003441579.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
           At-22]
 gi|288892229|gb|ADC60547.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
           At-22]
          Length = 243

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
            +YG+H V A L     +  ++   K    R D    LP  H    + V  Q  ++    
Sbjct: 4   MIYGIHAVQALLERAPERFQEVYILKG---REDKRL-LPLIHALEAQGVVIQVANRQFLD 59

Query: 108 E----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A 
Sbjct: 60  EKSEGAVHQGVIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++ 
Sbjct: 120 GVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 180 HTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|293390726|ref|ZP_06635060.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951260|gb|EFE01379.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 245

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 33/245 (13%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPPQ 99
           +YG+H V A + +   ++ ++   K           N + RL           V+ +  Q
Sbjct: 5   IYGIHAVKAFVTHYPERLIEVWVLKGRDDQRLQPLINEIQRLG--------ISVQFLNRQ 56

Query: 100 TIDKIVGKEAVHQGLA--LETAPLLSP-TLDAVRNSQ---LLMVLDHVNDPHNIGAILRS 153
           T+DK    E VHQG+   + + P L+   LD +   Q   LL+VLD V DPHN+GA LR+
Sbjct: 57  TLDKKAEGE-VHQGIIARVHSLPELNEHDLDRLLEQQKAPLLLVLDGVTDPHNLGACLRT 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQT 209
           A A   + +I  K  S   ++   K A GA E++P IR++NL      LQK H+ W    
Sbjct: 116 ADAAGVNAVIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVW---V 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G + ++ + L Q      +AL++G+EG+G+R  T+E    +  + M G + +LNVS A 
Sbjct: 173 VGTAGETTETLYQTKLTGALALVMGSEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVAT 232

Query: 270 AVALY 274
            V L+
Sbjct: 233 GVCLF 237


>gi|260581687|ref|ZP_05849484.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
           influenzae NT127]
 gi|260095280|gb|EEW79171.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
           influenzae NT127]
          Length = 246

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A  L+   LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGTVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +      W    +G + ++ 
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|319744132|gb|EFV96505.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 251

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 35/256 (13%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84
           K +   +  +  +YG+H V+ +L  N   K++             + LAT+  ++ + W 
Sbjct: 4   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVS-ISWT 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVL 138
                  P KT+   T         VHQG  L+ +      LS  +    N +  L+++L
Sbjct: 63  -------PKKTLSDMT------NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILIL 109

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+G+ILR+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  
Sbjct: 110 DGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQT 169

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +    F   G   +   P  +     K+AL++G EGKG+    ++    M  + M G
Sbjct: 170 LDTLKDKDFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNG 228

Query: 259 IIKALNVSNAAAVALY 274
            +++LN S AAA+ +Y
Sbjct: 229 HVQSLNASVAAAILMY 244


>gi|294507468|ref|YP_003571526.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
 gi|294343796|emb|CBH24574.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
          Length = 316

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 12/178 (6%)

Query: 109 AVHQGLALETAPL-----------LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156
           A HQG+   TAP+           ++PT DAV+ +Q +L+V+D V DP N GA+LRSAVA
Sbjct: 132 ATHQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAVA 191

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I   R     +A   K+++G    IP  R  +L   L ++   G+   G    +
Sbjct: 192 AGTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGTA 251

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + PL     +  +A++LG+EG+GL P+  E    +  + M G  ++LNVS A  + ++
Sbjct: 252 ETPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVF 309


>gi|156972464|ref|YP_001443371.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524058|gb|ABU69144.1| hypothetical protein VIBHAR_00084 [Vibrio harveyi ATCC BAA-1116]
          Length = 247

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L     +  +    K    R D D  +P  +   V  V  Q +    
Sbjct: 3   NEFIYGLHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+   ++ A  L+   +D +     S LL+VLD V DPHN+GA LR+
Sbjct: 59  LDDKANG--ANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G +
Sbjct: 117 ADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L
Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|94968032|ref|YP_590080.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550082|gb|ABF40006.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 261

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 125/245 (51%), Gaps = 15/245 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +YG+H VS AL +  R  FQ +A         + R+  DA       V+ +P   +D+ 
Sbjct: 3   VIYGIHPVSEALKSRGRS-FQYVAIAKDRMDPRVQRIVEDAR-ESGITVRFLPRDFLDRT 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSC 159
                +HQG+   T+      LD +   +      ++VLD + DPHN+GA++RSA     
Sbjct: 61  ANTN-MHQGVIAVTSKKEYLDLDDIIEKKRGEHAFVVVLDGIEDPHNLGALIRSADGAGV 119

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK 218
           DG++  +R +   +    K+++GA E++P  R++N+  +++ +   +   T+GL     +
Sbjct: 120 DGVVIPERRAVGVTGTAMKASAGAAEYVPIARVTNIARSIEDLKDKYNVWTVGLDERGTQ 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQ 277
             ++   N  +AL+LGAEGKGL    ++    +  + M G + +LNVS A  + +Y +++
Sbjct: 180 NYDEIDYNMSLALVLGAEGKGLHDLVRKKCDLLVKIPMAGEVSSLNVSVAGGIVMYEVSR 239

Query: 278 NHFAK 282
              AK
Sbjct: 240 QRRAK 244


>gi|301169579|emb|CBW29180.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae 10810]
          Length = 246

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A  L+   LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAMA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +      W    +G + ++ 
Sbjct: 124 VIAPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|116629012|ref|YP_814184.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853166|ref|ZP_04643553.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           202-4]
 gi|311111192|ref|ZP_07712589.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           MV-22]
 gi|116094594|gb|ABJ59746.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238834220|gb|EEQ26470.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           202-4]
 gi|311066346|gb|EFQ46686.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           MV-22]
          Length = 251

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 19/239 (7%)

Query: 50  FLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           F+YG H     L     N   K+F     +   A   +         V+  P   +D++V
Sbjct: 8   FVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQMV 67

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E  HQGL L  AP     LD + +          +++LD + DPHN+G+ILR+  A  
Sbjct: 68  NHEN-HQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDATG 126

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSD 215
            D +I  KR +   ++V+AK+++GA++++P  R++NL   T  L+K   W F T     D
Sbjct: 127 VDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEGED 186

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +K       N K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 187 YRK----WNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
          Length = 325

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 103/187 (55%), Gaps = 11/187 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           VP   +D++ G  A+HQGLAL+  P        LL    D+ R + L + LD V DP N+
Sbjct: 130 VPRNDLDRLTGG-ALHQGLALQVPPYSYAHPDELLEAAADSGRPA-LTVALDGVTDPRNL 187

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA++RS  AF   G++  +R +   +AV  ++++G    +P  R +NLT  L++  S G 
Sbjct: 188 GAVVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVARATNLTRTLREYASAGL 247

Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +GL++D    L++ ++    +AL+ G+EGKGL    +ET      + + G +++LN S
Sbjct: 248 MVVGLAADGDVSLDEFDLATGPLALVTGSEGKGLSRLVRETCDLTVSIPLAGRVESLNAS 307

Query: 267 NAAAVAL 273
            A  V L
Sbjct: 308 VATGVVL 314


>gi|227891225|ref|ZP_04009030.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867099|gb|EEJ74520.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 248

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           F+ G H   AAL        K+F     K    +  +         V  VP   +D +V 
Sbjct: 8   FIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTKLDNLVN 67

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+ +  A     T+D +      +N     ++LD + DPHN+G+I+R+A A   
Sbjct: 68  GQN-HQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRTADAAGV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGLSSDS 216
            GII  KR +   ++V+AK+++GA+EH+P +R++NL   ++++     W F T    +D 
Sbjct: 127 HGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTDMKGTDF 186

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +K   +       AL++G EGKG+ P  ++T   M  + M G +++LN S AA++ +Y
Sbjct: 187 RKWSAK----GATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLIY 240


>gi|330814214|ref|YP_004358453.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487309|gb|AEA81714.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 235

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 21/243 (8%)

Query: 45  QPENLFLYG----VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
           Q +N F  G    +H +S       R I Q+L+TK    +++   NL        V  + 
Sbjct: 2   QKDNFFWVGGKNTIHEISKW---KRRTIKQVLSTK----KINTSENLQETL----VDQKK 50

Query: 101 IDKIVGK-EAVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I+KI      VHQGLA    +T  L    +  + +   +++LD+VND  NIG+I+R+  A
Sbjct: 51  INKIFNDPNFVHQGLAALIEKTKFLKDKDIKNIPDHSNIVLLDNVNDIRNIGSIIRNCAA 110

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F    +I  K+ +  +S  L KSASGA EHI +I++SNL  A+Q++   GF     + D+
Sbjct: 111 FEISHLIIEKKINI-DSHYLFKSASGATEHIQFIKVSNLNTAIQELKRNGFFVFSAALDA 169

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YI 275
           K+ +++     K  ++LG+EG+G+R    + +     +     I +LNVSN +A+   ++
Sbjct: 170 KQTMKEISFGSKNCIVLGSEGEGVRNLISKNSDEHFKIEHSSNIDSLNVSNTSAIIFNHL 229

Query: 276 TQN 278
            QN
Sbjct: 230 YQN 232


>gi|300362338|ref|ZP_07058514.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353329|gb|EFJ69201.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 251

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145
           V+  P   +D++V  E  HQGL L  AP     LD + +          +++LD + DPH
Sbjct: 55  VQNAPKNKLDQMVNHEN-HQGLVLTVAPFEYADLDKLLDKFDQDGKDPFILMLDSIEDPH 113

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202
           N+G+ILR+  A   D +I  KR +   ++V+AK+++GA++++P  R++NL   T  L+K 
Sbjct: 114 NLGSILRTCDATGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQITKMLKKR 173

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T     D +K       N K  L++G EGKG+ P   +       + M G +++
Sbjct: 174 GYWIFGTAMKGEDYRK----WNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQS 229

Query: 263 LNVSNAAAVALY 274
           LN S A  V LY
Sbjct: 230 LNASVATGVLLY 241


>gi|120611681|ref|YP_971359.1| RNA methyltransferase [Acidovorax citrulli AAC00-1]
 gi|326317073|ref|YP_004234745.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|120590145|gb|ABM33585.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax citrulli
           AAC00-1]
 gi|323373909|gb|ADX46178.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 250

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 82/141 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY  ++
Sbjct: 102 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVT 161

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   L ++       IG S D+ + L +      +AL+LGAEG G+R  T++T   +  
Sbjct: 162 NLARTLGELKERNIWCIGTSDDAPRTLYEVDLKGPVALVLGAEGAGMRQLTRKTCDELVS 221

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LNVS A+ V LY
Sbjct: 222 IPMRGAVESLNVSVASGVCLY 242


>gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
          Length = 480

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 101/181 (55%), Gaps = 8/181 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           + +I G  +VHQG+AL+TA   +  L+++           LL+ LD V DPHN+GA++RS
Sbjct: 231 LGQITGG-SVHQGIALQTAAAETIDLESLIEGCSDLGEPPLLLALDGVTDPHNLGAVVRS 289

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G++  +R S   +   AK A+GALEH+P  R+ NL  +L+K+   G++ IGL+
Sbjct: 290 AEAMGAHGVVLPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVIGLA 349

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +    L     +  + L+ G+E +GL   T+     +  + + G+  +LN S A A+ +
Sbjct: 350 GEGDVTLPDVDLSGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRGVTPSLNASVATALCV 409

Query: 274 Y 274
           Y
Sbjct: 410 Y 410


>gi|320173666|gb|EFW48856.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella dysenteriae
           CDC 74-1112]
          Length = 243

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALEAQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 119 AGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q     ++AL++GAEG+G+R  T+     +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKMTGRLALVMGAEGEGMRRLTRVHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           radioresistens SK82]
 gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
 gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           radioresistens SK82]
 gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
          Length = 251

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 118/248 (47%), Gaps = 26/248 (10%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH V + L     ++  L   K     RL     L  PF   V+     +
Sbjct: 2   AKPE--YYYGVHAVESLLELEPERVLTLFTLKGREDQRLQKILELAEPFGISVQKASRDS 59

Query: 101 IDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           ++K+ G    HQG+     P           LL  T D      LL+ LD V DPHN+GA
Sbjct: 60  LEKLAGL-PFHQGVVAAVRPHPVMNEKDLEQLLEQTPDV-----LLLALDQVTDPHNLGA 113

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--HSWGF 207
            +R+A A     +I  +  S S +    K A+G  E + +I+++NL   L +M  HS   
Sbjct: 114 CIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQMKEHSQ-V 172

Query: 208 QTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           + IG   D +  PL+Q      I +++GAE  GLRP TQ       ++ M G +++LNVS
Sbjct: 173 RVIGTMLDEQALPLQQCDLTGPIVIVMGAEDTGLRPITQAQCDHKVYIPMAGNLQSLNVS 232

Query: 267 NAAAVALY 274
            A  +ALY
Sbjct: 233 VATGMALY 240


>gi|90962219|ref|YP_536135.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|301299870|ref|ZP_07206104.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821413|gb|ABE00052.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|300214881|gb|ADJ79297.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius CECT 5713]
 gi|300852541|gb|EFK80191.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 248

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           F+ G H   AAL        K+F     K    +  +         V  VP   +D +V 
Sbjct: 8   FIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTKLDNLVN 67

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+ +  A     T+D +      +N     ++LD + DPHN+G+I+R+A A   
Sbjct: 68  GQN-HQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRTADAAGV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII  KR +   ++V+AK+++GA+EH+P +R++NL   ++++   G    G        
Sbjct: 127 HGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTDMKGTDF 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   K    AL++G EGKG+ P  ++T   M  + M G +++LN S AA++ +Y
Sbjct: 187 RKWSAKG-ATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLIY 240


>gi|257452951|ref|ZP_05618250.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|257466669|ref|ZP_05630980.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917823|ref|ZP_07914063.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059492|ref|ZP_07923977.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313685168|gb|EFS22003.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313691698|gb|EFS28533.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 237

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 87/145 (60%), Gaps = 1/145 (0%)

Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           R SQ ++++LD + DP N GA++RSA  F  D II  +R S   +  + K+++GA+E++P
Sbjct: 84  RKSQSIILILDEIQDPRNFGALIRSAEVFGVDAIIIPERNSVRINETVVKTSTGAIEYVP 143

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            ++++NL++ ++K+    +   G + +++    +E    K+ L+LG EG GLR K +E  
Sbjct: 144 IVKVTNLSNTIEKLKKIDYWVYGAAGEAESSSAEEQYPQKVVLVLGNEGTGLRKKVREYC 203

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
             +  + M G I +LNVS A  + L
Sbjct: 204 DKLIKIPMRGKINSLNVSVAGGILL 228


>gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 325

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 107/188 (56%), Gaps = 14/188 (7%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDHVNDPH 145
           VP   +D++     +HQG+AL+  P        LLS   +A ++++  LL+ LD++ DP 
Sbjct: 132 VPRSDLDRL-SANGLHQGIALQVPPYRYAHPDDLLS---EARKHAEPPLLVALDNITDPR 187

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RS  AF   G++  +R S S SAV  ++++GA   +P  R +NLT  L+   S 
Sbjct: 188 NLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASK 247

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +GL ++    L+    +  + +++G+EGKGL    +E   ++  + M G +++LN 
Sbjct: 248 GVQVVGLDAEGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNA 307

Query: 266 SNAAAVAL 273
           S AA V L
Sbjct: 308 SVAAGVVL 315


>gi|227903249|ref|ZP_04021054.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|227869054|gb|EEJ76475.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 250

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 9/193 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145
           V++VP   +D++V     HQGL L  +      L   LD          L++LD + DPH
Sbjct: 54  VQSVPKNKLDRLV-DGGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPH 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR++   ++V+AK+++GA++++P  R++NL    +++   
Sbjct: 113 NLGSILRTADATGVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKR 172

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G         E   K  K  L++G EGKG+ P  ++       L M G +++LN 
Sbjct: 173 GYWFFGTDMAGVDYREWNAKG-KTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNA 231

Query: 266 SNAAAVALYITQN 278
           S A  V LY   N
Sbjct: 232 SVATGVLLYQAYN 244


>gi|329297950|ref|ZP_08255286.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Plautia stali
           symbiont]
          Length = 244

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H V A L  +P R  ++F L    +   +    A       ++    Q +D  V 
Sbjct: 4   IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLIAALEAQGIVIQLANRQWLDGQV- 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  VHQG+     P  +      P L A  +   L++LD V DPHN+GA LRSA A    
Sbjct: 63  EGGVHQGIVARVKPGKNYQEGDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K ASGA E++P IR++NL   ++ +  +    +G + ++   L
Sbjct: 123 AVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTMRLLQEYNVWIVGTAGEADHNL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      + L++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 183 YQSKMTGAMVLVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|83816243|ref|YP_445585.1| RNA methyltransferase [Salinibacter ruber DSM 13855]
 gi|83757637|gb|ABC45750.1| RNA methyltransferase, TrmH family, group 3 [Salinibacter ruber DSM
           13855]
          Length = 253

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 12/178 (6%)

Query: 109 AVHQGLALETAPL-----------LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156
           A HQG+   TAP+           ++PT DAV+ +Q +L+V+D V DP N GA+LRSAVA
Sbjct: 69  ATHQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAVA 128

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I   R     +A   K+++G    IP  R  +L   L ++   G+   G    +
Sbjct: 129 AGTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGTA 188

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + PL     +  +A++LG+EG+GL P+  E    +  + M G  ++LNVS A  + ++
Sbjct: 189 ETPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVF 246


>gi|224542352|ref|ZP_03682891.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524734|gb|EEF93839.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
           15897]
          Length = 241

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 16/239 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++YG +TV   L  P R++ +++    +  + + +L    N+     ++        K+V
Sbjct: 4   WIYGKNTVRELLTGP-RQVHEVMIQNQSKNDDIVKLCRKNNIK----MRMTDKNGFIKLV 58

Query: 106 GKEAVHQG-LALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           G    HQG +AL      +P  D VRN       LL++LD + DPHN+GAI+R+  A   
Sbjct: 59  GN-VNHQGVMALIDGYDYTPLEDIVRNIPEGKQPLLLMLDGMEDPHNLGAIIRTCDAIGV 117

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG+I  K+ S   +A +AK ++GA++H+P  +++NL+  L  +   GF  +G   D+   
Sbjct: 118 DGVIIGKKRSVGLNATVAKVSTGAIDHVPVAQVTNLSRTLDSLKKEGFWVVGCELDNSTD 177

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 N  + L++G+EG G+    +E       L M G + +LN S A AV LY   N
Sbjct: 178 YRAVDYNMPLVLVIGSEGFGISRLVKEHCDMNVILPMVGHVNSLNASVATAVLLYQVYN 236


>gi|238786345|ref|ZP_04630280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           bercovieri ATCC 43970]
 gi|238712744|gb|EEQ04821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           bercovieri ATCC 43970]
          Length = 246

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L+N  ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVANRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V +  VHQG+               P L        L+VLD V DPHN+GA LRSA 
Sbjct: 59  DAQV-EGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLF 236


>gi|322831164|ref|YP_004211191.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
 gi|321166365|gb|ADW72064.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
          Length = 271

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H+V A L+N P R  ++F L    +   +   D        ++    Q +D+   
Sbjct: 28  IIYGIHSVKALLDNDPQRFLEVFILKGRDDKRLKPLIDELEASGIVIQVASRQWLDE-KS 86

Query: 107 KEAVHQGLALET----------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + AVHQG+               P L  +LD       L+VLD V DPHN+GA LR+A A
Sbjct: 87  EGAVHQGIIARVREGRQYQENDLPALLESLDC----PFLLVLDGVTDPHNLGACLRTADA 142

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  +  S   +A   K ASGA E++P I ++NL   L+ +       +G + ++
Sbjct: 143 AGVHAVIVPRDRSAKLNATAKKVASGAAENVPLINVTNLARTLRVLQEHNVWIVGTAGEA 202

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 203 DHDLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 260


>gi|145629932|ref|ZP_01785714.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
           R3021]
 gi|144984213|gb|EDJ91636.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
           R3021]
          Length = 246

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A  L+   LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILSNKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +      W    +G + ++ 
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEIVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|319794335|ref|YP_004155975.1| RNA methyltransferase, trmh family, group 3 [Variovorax paradoxus
           EPS]
 gi|315596798|gb|ADU37864.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           EPS]
          Length = 248

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY  ++
Sbjct: 100 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAAGINATVAKVASGAAETVPYFMVT 159

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   + ++       +G S D+   + Q      +AL+LGAEG G+R  T++T   +  
Sbjct: 160 NLARTMNELKERSIWCVGTSDDAPGTIYQSDLKRPLALVLGAEGDGMRQLTRKTCDELVS 219

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LNVS A+ V LY
Sbjct: 220 IPMAGAVESLNVSVASGVCLY 240


>gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
 gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
          Length = 536

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 11/175 (6%)

Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           AVHQG+ L+TA   + TLD          +  S LL+ LD + DPHN+GAI+RSA A   
Sbjct: 241 AVHQGIVLQTA--AAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGA 298

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ IGL+ +    
Sbjct: 299 HGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDIT 358

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     +  + ++ G+E +G+   T+     +  + + G+  +LN S A A+ LY
Sbjct: 359 LPDVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLY 413


>gi|90020702|ref|YP_526529.1| tyrosyl-tRNA synthetase, class Ib [Saccharophagus degradans 2-40]
 gi|89950302|gb|ABD80317.1| RNA methyltransferase TrmH, group 3 [Saccharophagus degradans 2-40]
          Length = 248

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVP--PQTIDKIVG 106
            ++G+H V + L    ++I ++   +    AR+    +      +K +P   +++D  V 
Sbjct: 6   IIFGLHAVQSLLKASPQRIQEIWIVRGRQDARVQKVLSAAQAAGIKVLPQDKKSMDS-VS 64

Query: 107 KEAVHQGL---ALE----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+   A E    T   L P ++A+    L++VLD V DPHN+GA LRSA A   
Sbjct: 65  ADGNHQGVLAYAKEGQSYTENDLYPLIEAIEGDPLIVVLDGVTDPHNLGACLRSADAAGA 124

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   + V  K A GA +++P I ++NL   L+KM   G    G + D+ K 
Sbjct: 125 HALIVPKDNSVGLTEVARKVACGAADNVPLIVVTNLARCLKKMQEQGLWVAGTTGDTDKS 184

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          +++GAEG G+R  T ET   +  + M G + +LNVS A  V L+
Sbjct: 185 IYDVDLTGPRVIVMGAEGTGMRRLTTETCDDLVKIPMLGSVTSLNVSVATGVVLF 239


>gi|89901014|ref|YP_523485.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118]
 gi|89345751|gb|ABD69954.1| RNA methyltransferase TrmH, group 3 [Rhodoferax ferrireducens T118]
          Length = 256

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 81/145 (55%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L++VLD V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY
Sbjct: 104 REEALILVLDGVTDPHNLGACLRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPY 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             ++NL   L ++       IG S  + K + Q      +AL+LGAEG G+R  T +T  
Sbjct: 164 FMVTNLARTLNELKERNIWIIGTSDVAPKTIYQADLKGPVALVLGAEGDGMRALTAKTCD 223

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + M G +++LNVS A+ V LY
Sbjct: 224 ELVSIPMRGAVESLNVSVASGVCLY 248


>gi|328675679|gb|AEB28354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
           novicida 3523]
          Length = 248

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 10/237 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K        ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISRAESKGLKITYIDNFKQLPGRIR 63

Query: 107 KEAVHQGL-ALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     +       TL     +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAIEINDFKTYSENDIETLIPKDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSSPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGIWVIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T
Sbjct: 184 LYSMNLEDSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240


>gi|163802755|ref|ZP_02196645.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159173462|gb|EDP58284.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 247

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 123/241 (51%), Gaps = 20/241 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI---- 101
           N F+YG+H V A L     +  +    K    R D D  +P  +   V  V  Q +    
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLK---GRQD-DRLMPILNDLQVCGVSIQQMTRKT 58

Query: 102 --DKIVGKEAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
             DK  G  A HQG+   ++ A  L+   +D +    ++ LL+VLD V DPHN+GA LR+
Sbjct: 59  LDDKAHG--ANHQGIIARVKAAKQLNENDIDGILAQHDAPLLLVLDGVTDPHNLGACLRN 116

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G +
Sbjct: 117 ADAAGAAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTA 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++   + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L
Sbjct: 177 GEATHDIYQAKLTGPLAIVMGAEGGGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICL 236

Query: 274 Y 274
           +
Sbjct: 237 F 237


>gi|22536393|ref|NP_687244.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76787268|ref|YP_328940.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|76799582|ref|ZP_00781707.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 18RS21]
 gi|77405353|ref|ZP_00782448.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
 gi|77410962|ref|ZP_00787318.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae CJB111]
 gi|22533220|gb|AAM99116.1|AE014201_14 RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 2603V/R]
 gi|76562325|gb|ABA44909.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|76585065|gb|EAO61698.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 18RS21]
 gi|77163017|gb|EAO73972.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae CJB111]
 gi|77176031|gb|EAO78805.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
          Length = 251

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 35/256 (13%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84
           K +   +  +  +YG+H V+ +L  N   K++             + LAT+  ++ + W 
Sbjct: 4   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVS-ISWT 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVL 138
                  P KT+   T         VHQG  L+ +      LS  +    N +  L+++L
Sbjct: 63  -------PKKTLSDMT------NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILIL 109

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+G+ILR+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  
Sbjct: 110 DGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQT 169

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +    F   G   +   P  +     K+AL++G EGKG+    ++    M  + M G
Sbjct: 170 LDTLKDKEFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNG 228

Query: 259 IIKALNVSNAAAVALY 274
            +++LN S AAA+ +Y
Sbjct: 229 HVQSLNASVAAAILMY 244


>gi|325921140|ref|ZP_08183011.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325548412|gb|EGD19395.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 249

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIEVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+    A         L   + A     LL++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVVARYAAARLWAENELEALVTAAEGRALLLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A S   ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AASVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS AA V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGDIESLNVSVAAGVTLF 240


>gi|78485830|ref|YP_391755.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
           XCL-2]
 gi|78364116|gb|ABB42081.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
           XCL-2]
          Length = 244

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 18/236 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDKIV 105
           LYG+H +   L      I+ L   K  + +     +D    +   + ++  P    +K+ 
Sbjct: 6   LYGIHAIEKFLKQSPHLIYSLTFQKGPVNKRVQSLMDQAKRMGIAYQLE--PKSFFNKL- 62

Query: 106 GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E VHQG+    A         L   L+A  N  L + LD V DPHN+GAILR+A A  
Sbjct: 63  --EGVHQGVVATVAKEADLNETDLKALLEAESNP-LFLFLDEVQDPHNLGAILRTADATG 119

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              ++  K  S   +A + K A GA E +  + +SNL   ++++   G    GL+ ++  
Sbjct: 120 VTAVVIPKHNSVGVNATVRKVACGAAETVKVVVVSNLVRTIKELQQAGLWVTGLAGETNT 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L Q      + L++GAEG GLR  T+ET   +A + M G I++LNVS A  V LY
Sbjct: 180 TLYQLDFKGAVGLVMGAEGSGLRKLTRETCDHLAAIPMAGSIESLNVSVATGVVLY 235


>gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
           erythropolis SK121]
 gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
           erythropolis SK121]
          Length = 323

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 107/188 (56%), Gaps = 14/188 (7%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDHVNDPH 145
           VP   +D++     +HQG+AL+  P        LLS   +A ++++  LL+ LD++ DP 
Sbjct: 130 VPRTDLDRL-SANGLHQGIALQVPPYRYAHPDDLLS---EARKHAEPPLLVALDNITDPR 185

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RS  AF   G++  +R S S SAV  ++++GA   +P  R +NLT  L+   S 
Sbjct: 186 NLGAVVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASK 245

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +GL ++    L+    +  + +++G+EGKGL    +E   ++  + M G +++LN 
Sbjct: 246 GVQVVGLDAEGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNA 305

Query: 266 SNAAAVAL 273
           S AA V L
Sbjct: 306 SVAAGVVL 313


>gi|113460298|ref|YP_718358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
           129PT]
 gi|170718084|ref|YP_001783373.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
           2336]
 gi|112822341|gb|ABI24430.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Haemophilus somnus 129PT]
 gi|168826213|gb|ACA31584.1| RNA methyltransferase, TrmH family, group 3 [Haemophilus somnus
           2336]
          Length = 245

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 19/238 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107
           +YG+H V A L N   ++ ++   K     RL    N  +     V+ +   T+DK    
Sbjct: 5   IYGIHAVQAFLINAPERLIEVYVLKGREDKRLQSVLNELYKLGISVQFLNRDTLDKKANG 64

Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+     P        L   L    N  LL+VLD + DPHN+GA LRSA A    
Sbjct: 65  E-VHQGIIARVQPAKELNENDLVEILQKKANP-LLLVLDGITDPHNLGACLRSADAAGVC 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHS-WGFQTIGLSSDS 216
            +I  K  S   +A+  K A GA E +P +R++NL      LQ+ H+ W    +G + ++
Sbjct: 123 AVIVPKDKSAQLTAIARKVACGAAEVVPLVRVTNLARTLRDLQQQHNIW---VVGTAGEA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + L +      +AL++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+
Sbjct: 180 IETLYEAKLTGGLALVMGAEGDGMRRLTRETCDQLISIPMAGSVSSLNVSVATGICLF 237


>gi|118497130|ref|YP_898180.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. novicida
           U112]
 gi|194323428|ref|ZP_03057205.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
           subsp. novicida FTE]
 gi|118423036|gb|ABK89426.1| tRNA/rRNA methyltransferase [Francisella novicida U112]
 gi|194322283|gb|EDX19764.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
           subsp. novicida FTE]
          Length = 248

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNASHKIEGIISKAESKGLKVTYIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240


>gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           lwoffii SH145]
 gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           lwoffii SH145]
          Length = 249

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 15/243 (6%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH+V + L     ++  L   K     RL     L  PF   V+      
Sbjct: 2   AKPE--YFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQASRDK 59

Query: 101 IDKIVGKEAVHQGL--ALETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           ++K+ G +  HQG+  A+   P L+     +L +     LL+ LDH+ DPHN+GA +R+A
Sbjct: 60  LEKLAG-QPFHQGVVAAVRAHPTLNEKDLESLLSANPQALLLALDHITDPHNLGACIRTA 118

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLS 213
            A   + +I  +  S + +    K A+G  + + +I+++NL   L ++   +  + +G  
Sbjct: 119 AAMGVEAVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQIKEDFNVRVVGTM 178

Query: 214 SDSKK-PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            D K  P++  +     + +++GAE  GLRP TQ       ++ M G +++LNVS A  +
Sbjct: 179 LDEKALPIQNFDFTGTGVCIVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGM 238

Query: 272 ALY 274
           ALY
Sbjct: 239 ALY 241


>gi|271501896|ref|YP_003334922.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345451|gb|ACZ78216.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
           Ech586]
          Length = 244

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+          V+    Q +
Sbjct: 4   IIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEASG-----IAVQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V + AVHQG+               P L A   +  L+VLD V DPHN+GA LRSA 
Sbjct: 59  DDKV-EGAVHQGIIARVKEGRQYQENDLPGLLASHATPFLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 178 ADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|23007926|ref|ZP_00049585.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 135

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 69/111 (62%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A AF    I+TT R+SP+ + VLAKSASG LEH+P + + NL +AL  + 
Sbjct: 16  PHNVGAIVRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLG 75

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             GF  IGL S++   L+         L LGAEGKGLR +T E    +  +
Sbjct: 76  ERGFTRIGLDSEAGTSLDAIGPRRPAVLALGAEGKGLRQRTTECCDVLVRI 126


>gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Prochlorococcus marinus str. MIT 9313]
 gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
          Length = 535

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 11/175 (6%)

Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           AVHQG+ L+TA   + TLD          +  S LL+ LD + DPHN+GAI+RSA A   
Sbjct: 240 AVHQGIVLQTA--AAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGA 297

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ IGL+ +    
Sbjct: 298 HGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDIT 357

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     +  + ++ G+E +G+   T+     +  + + G+  +LN S A A+ LY
Sbjct: 358 LPDVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLY 412


>gi|237809345|ref|YP_002893785.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
           9187]
 gi|237501606|gb|ACQ94199.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
           9187]
          Length = 245

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQTID 102
            +YG+HTV A L     +  +    K      D D   P       +   ++ V  +T+D
Sbjct: 5   LIYGIHTVKALLEQAPERFLEAWVLKGR----DDDRLQPLLAILQQYGVSIQYVQRKTLD 60

Query: 103 KIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVA 156
               + A+HQG+     E   L    LD +   +     +VLD V DPHN+GA LR+A A
Sbjct: 61  D-KAEGAIHQGIIARVREGRKLDESDLDKILEKEQTPFFLVLDGVTDPHNLGACLRTADA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  +  S S +    K A GA E +P+I+++NL   L+++   G   +G + ++
Sbjct: 120 AGVHALIVPRDKSVSLTGTARKVACGAAESVPFIQVTNLARTLRELKERGVWVVGTAGEA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +        +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 180 THDVFAAKLTGSLALVMGAEGDGMRRLTREHCDELISIPMAGAVSSLNVSVATGVCLF 237


>gi|322436781|ref|YP_004218993.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX9]
 gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX9]
          Length = 263

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 115/241 (47%), Gaps = 23/241 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTIDK 103
           LYG+H V  A+ +  R++  +L +++        L +L     L     V   P   + +
Sbjct: 4   LYGLHPVEEAIRSGGRRLEYVLISRDRRDKGDDRLTKLVELCKLAG-VRVSIEPKDQLTR 62

Query: 104 IVGKEAVHQG----------LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           + G +A HQG          LA+E         D     +  + LD V DPHN+GA+LRS
Sbjct: 63  VAGTDA-HQGAVAAVRERQFLAIEDLLAAKGNFD----KRFFLALDGVEDPHNLGALLRS 117

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     DG++   R S   S V+AK+++GA EH+   R++NL  +L++M       +GL 
Sbjct: 118 ADGAGVDGVVLPDRRSAPLSGVVAKTSAGASEHVKIARVTNLVRSLEQMKRANIWVLGLD 177

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                       N    L+LG+EG GL   T++T   +  + M G + +LNVS A AV +
Sbjct: 178 ERGTPDYTAFDFNSDCVLVLGSEGTGLHDLTKKTCDHLLRIPMAGSVSSLNVSVAGAVVM 237

Query: 274 Y 274
           Y
Sbjct: 238 Y 238


>gi|254481117|ref|ZP_05094363.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2148]
 gi|214038912|gb|EEB79573.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2148]
          Length = 251

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 31/249 (12%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA-----TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           ++YG+H V + L    + + +L        K   + L+   N     P+     + +D +
Sbjct: 3   YIYGIHAVDSLLRQNPKSVQRLWVQQGREDKRIASLLELAQN--QGVPMARESRKDLDDM 60

Query: 105 VGKEAVHQGLALETA--PLLSPT--------------LDAVRNSQLLMVLDHVNDPHNIG 148
           V  +  HQG+  ET   P+   T              +D   +  L++VLD V DPHN+G
Sbjct: 61  V--KGRHQGVVAETLSDPVHGDTQQANLWQESDLLRMVDEKDSPVLILVLDGVTDPHNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSW 205
           A LRSA A   D ++  K  S   S  + K A GA E +P++R++N++   DAL++   W
Sbjct: 119 ACLRSADAAGVDAVVVPKDKSADLSPTVRKVACGAGEIVPFVRVTNISRTLDALKERQVW 178

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            F   G + +++K +        +AL++GAEG GLR  T+E    +  L M G + +LNV
Sbjct: 179 IF---GAAGEAEKSIYDNDLTGSMALVMGAEGAGLRRLTREHCDFLIKLPMAGSVSSLNV 235

Query: 266 SNAAAVALY 274
           S A  V L+
Sbjct: 236 SVATGVCLF 244


>gi|320333743|ref|YP_004170454.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319755032|gb|ADV66789.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           maricopensis DSM 21211]
          Length = 242

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPH 145
           V+  P   +D++ G  A HQG+  E   L   T+D +      R   LL+VL D + DP 
Sbjct: 42  VRFAPRIELDQLAGTTA-HQGVIAEVEDLEWATVDDILDRAESRGEDLLVVLLDGITDPR 100

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI+RSA      G+I  +R S   S V+AK+A+GA  ++P  +  NL   + ++ + 
Sbjct: 101 NFGAIIRSAEVLGAHGVIVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKTD 160

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G + ++ + L +     K+AL++GAEG+GLR   +E    +  + + G +++LN 
Sbjct: 161 GVWVYGAAGEAARDLRELDYRGKLALVIGAEGEGLRRLVREKCDELVSIPVRGRVQSLNA 220

Query: 266 SNAAAVALY 274
           S AA++ LY
Sbjct: 221 SVAASILLY 229


>gi|146310028|ref|YP_001175102.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Enterobacter sp. 638]
 gi|145316904|gb|ABP59051.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 244

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKI 104
            +YG+H V A L   P R  ++F L   ++   RL     LP  H    + V  Q   + 
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL-----LPLIHALEAQGVVIQLASRQ 56

Query: 105 VGKE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
              E    AVHQG+     P         P L A  ++   ++LD V DPHN+GA LRSA
Sbjct: 57  FLDEKSEGAVHQGIIARAKPGRQYQENDLPDLIAQLDNPFFLILDGVTDPHNLGACLRSA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  +   +A   K A GA E++P IR++NL   ++++       +G + 
Sbjct: 117 DAAGVHAVIVPRDRAAQLNATAKKVACGAAENVPLIRVTNLARTMRQLQEENIWIVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 177 EADHTVYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|304396947|ref|ZP_07378827.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
 gi|304355743|gb|EFM20110.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
          Length = 244

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H V A L  +P R  ++F L    +   +    A       ++    + +D  V 
Sbjct: 4   IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALEAQGIVIQLAERKWLDSQV- 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  VHQG+     P         P L    +   L+VLD V DPHN+GA LRSA A    
Sbjct: 63  EGGVHQGIVARVKPGRQYQEGDLPDLLQSLDKPFLLVLDGVTDPHNLGACLRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  K  S   +A   K ASGA E++P IR++NL   L+ +  +    +G + ++   +
Sbjct: 123 AIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTV 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 183 FQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|300721497|ref|YP_003710772.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627989|emb|CBJ88538.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 245

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTI 101
            +YG+H V A L +  ++  ++   K        D  L   F         V+    Q +
Sbjct: 4   IIYGIHAVKALLESDPQRFMEVYVLKG-----REDRRLTPLFQELESIGITVQLANRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D    + AVHQG+     P         P L +  +   L+VLD V DPHN+GA LR+A 
Sbjct: 59  DAQT-EGAVHQGIIARVKPGRQYQENDLPDLLSQLDRPFLLVLDGVTDPHNLGACLRTAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + +
Sbjct: 118 AAGVDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEHNIWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L +      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 178 ATHALYESKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|330003381|ref|ZP_08304596.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
           92-3]
 gi|328536991|gb|EGF63283.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
           92-3]
          Length = 255

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 115/244 (47%), Gaps = 16/244 (6%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQT 100
           TS   +  +YG+H V A L     +  ++   K    R D    LP  H    + V  Q 
Sbjct: 9   TSTSMSEMIYGIHAVQALLERAPERFQEVYILKG---REDKRL-LPLIHALEAQGVVIQL 64

Query: 101 IDKIVGKE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            ++    E    AVHQG+     P         P L A  +   L++LD V DPHN+GA 
Sbjct: 65  ANRQFLDEKSEGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGAC 124

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA A     +I  K  S   +A   K A GA E++P IR++NL   ++ +       +
Sbjct: 125 LRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIV 184

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  
Sbjct: 185 GTAGEADHTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATG 244

Query: 271 VALY 274
           + L+
Sbjct: 245 ICLF 248


>gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
 gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
          Length = 273

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            VHQG+A E         P L     A   + L++VLD + DPHN+GAI+RSA A    G
Sbjct: 80  GVHQGVAAELRGFEYVDVPDLLEAAKASGRAPLVVVLDGIQDPHNLGAIIRSAHALGAHG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+  K  +   + V+AK+++GA+EH P  R+ N++ AL+++   G       + SK+PL 
Sbjct: 140 IVIGKDRAVQVTGVVAKASAGAVEHCPIARVVNISRALEELKEAGLWVAAADTHSKEPLW 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  +AL++GAEG G+R    +       + M G + +LN S +AAV LY
Sbjct: 200 GARLDGPLALVVGAEGAGVREGVLKHCDFRLGIPMVGQVGSLNASVSAAVLLY 252


>gi|238797599|ref|ZP_04641096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           mollaretii ATCC 43969]
 gi|238718596|gb|EEQ10415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           mollaretii ATCC 43969]
          Length = 246

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L+N  ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELE-----AAGLVIQVANRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V +  VHQG+               P L        L+VLD V DPHN+GA LRSA 
Sbjct: 59  DAQV-EGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLF 236


>gi|332970729|gb|EGK09709.1| RNA methyltransferase [Desmospora sp. 8437]
          Length = 247

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145
           V+ VP QT+D++      HQG+A +  P     L+ +  R  +      +++LD + DPH
Sbjct: 52  VQQVPRQTLDRVAAG-LNHQGVAAQAEPWRYAELEELFQRAEERDEPPFILLLDGIEDPH 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A    G++  KR +   +  +AK+++GA+EH+P +R++NL     ++   
Sbjct: 111 NLGSILRTADASGVHGVVIPKRRAAGLTPTVAKTSAGAVEHVPVVRVTNLNRTADELKER 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +   +D+    ++   +  +AL++G EGKG+  + +E       L M G + +LN 
Sbjct: 171 GVWLVAGDADASARYDEMDYSLPVALVIGNEGKGVSRRLKEKCDFTVGLPMKGAVSSLNA 230

Query: 266 SNAAAVALY 274
           S AAA+ +Y
Sbjct: 231 SVAAALLMY 239


>gi|238757527|ref|ZP_04618712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
           ATCC 35236]
 gi|238704289|gb|EEP96821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
           ATCC 35236]
          Length = 246

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTIDK 103
            +YG+H++ A L+N  ++  ++   K    R      ++ +A       ++    + +D 
Sbjct: 4   IIYGIHSIKALLDNDPQRFLEVFILKGRDDRRLQSLIVELEAT---GLVIQVASRKWLDS 60

Query: 104 IVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            V ++  HQG+               P L     +  L+VLD V DPHN+GA LRSA A 
Sbjct: 61  QV-EDGAHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++ 
Sbjct: 120 GVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 180 HTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|332283859|ref|YP_004415770.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330427812|gb|AEC19146.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 249

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 103/190 (54%), Gaps = 9/190 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLDAVRNSQ---LLMVLDHVNDP 144
           V+ VP + +D +  +   HQG+     A E A  +   LD + +     LL++LD V DP
Sbjct: 52  VRPVPAERLDGL-ARGTRHQGVVALAEAREIAADVDEVLDLLEDKSEPALLLILDSVTDP 110

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GA LR+A A     +I  +  +   ++ + + A GA E +PYI ++NL   ++++ S
Sbjct: 111 HNLGACLRTADAAGVHAVIAPRDKAVGLNSTVQRVACGAAETVPYIMVTNLARTMRQLKS 170

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +G    +   L Q      +A ++GAEG+G+R  T+ET   +  + M G +++LN
Sbjct: 171 RDVWLVGTDDQATGSLHQVDARRPMAWVMGAEGEGMRRLTRETCDELVTIPMLGSVESLN 230

Query: 265 VSNAAAVALY 274
           VS A+AV LY
Sbjct: 231 VSVASAVCLY 240


>gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           proteolyticus MRP]
 gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           proteolyticus MRP]
          Length = 239

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 11/235 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + +YG + V+ AL    R    LLA   ++A AR            V+  P   +D++ G
Sbjct: 1   MLIYGRNPVTEALRE-GRVEEVLLAHGVEDAFARQLRALADEAGVRVRQAPRIELDQLAG 59

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+  E   L   +  A+ +       + LL++LD + DP N GAI+RSA     
Sbjct: 60  TTA-HQGVLAEAEELSWSSPQAIWDLAERRGEAPLLVLLDGITDPRNFGAIVRSAEVLGA 118

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +R S   SAV+AK+A+GA  ++P +++ NL   ++++        G + ++ +P
Sbjct: 119 HGVVVEERRSAPLSAVVAKTAAGATAYLPVVQVKNLPRFIEELKDRNVWVYGAAGEAAQP 178

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           LE+   +  +AL++G+EG GLR   +E    +  + + G +++LN S AA + +Y
Sbjct: 179 LERTDLSGPVALVIGSEGDGLRRLVRERCDGLVSIPVRGQVQSLNASVAAGILIY 233


>gi|56961913|ref|YP_173635.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
 gi|56908147|dbj|BAD62674.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
          Length = 263

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 103/189 (54%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+T P + +D++VG  + HQG+    A      +DA+             +VLD + DPH
Sbjct: 67  VQTAPKRKLDQLVG-HSNHQGVVASVAAYEYADMDALFAKAAAAHEAPFFLVLDEIEDPH 125

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR S   +  +AK+++GA+E+IP +R++NL   + ++   
Sbjct: 126 NLGSIMRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEYIPVVRVTNLARTMDELKKQ 185

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  + ++    +   N  + L++G+EGKG+    +E    +  + M G + +LN 
Sbjct: 186 GLWFAGTDAAAEGDYREADYNLPLCLVIGSEGKGISRLIKEKCDFLVSIPMKGRVTSLNA 245

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 246 SVAASLLMY 254


>gi|323443096|gb|EGB00716.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O46]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   
Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|315301171|ref|ZP_07872437.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
           F6-596]
 gi|313630458|gb|EFR98325.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
           F6-596]
          Length = 251

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 104/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+ VP Q I+K+V     HQG+A + A      LD + N+          ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVV--NGAHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A +    GII  KR +   +  +AK+++GA+E++P +R++N+   ++++   
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  ++          +  +A+++G+EG G+    +E    + HL M G + +LN 
Sbjct: 172 GLWIFGTDANGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNA 231

Query: 266 SNAAAVALY 274
           S AA++ LY
Sbjct: 232 SVAASILLY 240


>gi|213618544|ref|ZP_03372370.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 220

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 6/172 (3%)

Query: 109 AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A     +
Sbjct: 42  AVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAGVHAV 101

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L Q
Sbjct: 102 IVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQ 161

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 162 SKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 213


>gi|57651408|ref|YP_185464.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87162210|ref|YP_493220.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194294|ref|YP_499086.1| hypothetical protein SAOUHSC_00513 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151220706|ref|YP_001331528.1| hypothetical protein NWMN_0494 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508771|ref|YP_001574430.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141032|ref|ZP_03565525.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|262049574|ref|ZP_06022443.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
 gi|282924445|ref|ZP_06332117.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9765]
 gi|284023541|ref|ZP_06377939.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294850307|ref|ZP_06791041.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|304381870|ref|ZP_07364517.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|75410372|sp|Q9AGT0|TRMHL_STAAE RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81695161|sp|Q5HIE3|TRMHL_STAAC RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|13183698|gb|AAK15305.1|AF327733_2 YacO [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57285594|gb|AAW37688.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128184|gb|ABD22698.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87201852|gb|ABD29662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150373506|dbj|BAF66766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367580|gb|ABX28551.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259162314|gb|EEW46887.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
 gi|269940104|emb|CBI48480.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282592856|gb|EFB97860.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9765]
 gi|294822819|gb|EFG39254.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|302750423|gb|ADL64600.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304339656|gb|EFM05603.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196657|gb|EFU27004.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141604|gb|EFW33443.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320141768|gb|EFW33596.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313252|gb|AEB87665.1| Putative trmH family tRNA/rRNA methyltransferase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329731031|gb|EGG67404.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   
Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|15923521|ref|NP_371055.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926209|ref|NP_373742.1| hypothetical protein SA0490 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282216|ref|NP_645304.1| hypothetical protein MW0487 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49482761|ref|YP_039985.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49485396|ref|YP_042617.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82750239|ref|YP_415980.1| tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|148266991|ref|YP_001245934.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393038|ref|YP_001315713.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
 gi|156978860|ref|YP_001441119.1| hypothetical protein SAHV_0529 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315641|ref|ZP_04838854.1| hypothetical protein SauraC_05752 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731136|ref|ZP_04865301.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253732539|ref|ZP_04866704.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005325|ref|ZP_05143926.2| hypothetical protein SauraM_02620 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424645|ref|ZP_05601072.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427313|ref|ZP_05603712.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429949|ref|ZP_05606333.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257435555|ref|ZP_05611603.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257795370|ref|ZP_05644349.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|258408943|ref|ZP_05681224.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9763]
 gi|258420419|ref|ZP_05683362.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9719]
 gi|258422622|ref|ZP_05685528.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9635]
 gi|258439340|ref|ZP_05690272.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|258444080|ref|ZP_05692417.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|258446348|ref|ZP_05694506.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
 gi|258448441|ref|ZP_05696556.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|258453797|ref|ZP_05701771.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5937]
 gi|269202154|ref|YP_003281423.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894966|ref|ZP_06303189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A8117]
 gi|282903119|ref|ZP_06311010.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282904909|ref|ZP_06312767.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282910172|ref|ZP_06317976.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913364|ref|ZP_06321153.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282915854|ref|ZP_06323619.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282918319|ref|ZP_06326056.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282923281|ref|ZP_06330961.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282928868|ref|ZP_06336459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A10102]
 gi|283769687|ref|ZP_06342579.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957329|ref|ZP_06374782.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293500410|ref|ZP_06666261.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509355|ref|ZP_06668066.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M809]
 gi|293523942|ref|ZP_06670629.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295406908|ref|ZP_06816711.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|295427069|ref|ZP_06819705.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275777|ref|ZP_06858284.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297208755|ref|ZP_06925183.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246268|ref|ZP_06930117.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|297590578|ref|ZP_06949217.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300912845|ref|ZP_07130287.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81649904|sp|Q6GBV6|TRMHL_STAAS RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81651699|sp|Q6GJD7|TRMHL_STAAR RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81704678|sp|Q7A1Q9|TRMHL_STAAW RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81706174|sp|Q7A794|TRMHL_STAAN RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81782082|sp|Q99W72|TRMHL_STAAM RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|13700422|dbj|BAB41720.1| SA0490 [Staphylococcus aureus subsp. aureus N315]
 gi|14246299|dbj|BAB56693.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203652|dbj|BAB94352.1| MW0487 [Staphylococcus aureus subsp. aureus MW2]
 gi|49240890|emb|CAG39557.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49243839|emb|CAG42264.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82655770|emb|CAI80170.1| probable tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|147740060|gb|ABQ48358.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945490|gb|ABR51426.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156720995|dbj|BAF77412.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725101|gb|EES93830.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253729468|gb|EES98197.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272215|gb|EEV04338.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275506|gb|EEV06979.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279146|gb|EEV09747.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257284746|gb|EEV14865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257789342|gb|EEV27682.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|257840294|gb|EEV64757.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9763]
 gi|257843609|gb|EEV68015.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9719]
 gi|257847194|gb|EEV71202.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9635]
 gi|257847677|gb|EEV71676.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|257850750|gb|EEV74695.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|257854942|gb|EEV77887.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
 gi|257858310|gb|EEV81197.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|257864053|gb|EEV86807.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5937]
 gi|262074444|gb|ACY10417.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282314149|gb|EFB44539.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317453|gb|EFB47825.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282320150|gb|EFB50495.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282322396|gb|EFB52718.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325564|gb|EFB55872.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282331734|gb|EFB61245.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282589476|gb|EFB94565.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A10102]
 gi|282596074|gb|EFC01035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282762648|gb|EFC02785.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A8117]
 gi|283459834|gb|EFC06924.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283469824|emb|CAQ49035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790780|gb|EFC29595.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|285816231|gb|ADC36718.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus aureus
           04-02981]
 gi|290920905|gb|EFD97966.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095415|gb|EFE25676.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467452|gb|EFF09967.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M809]
 gi|294968139|gb|EFG44165.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|295128857|gb|EFG58487.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886700|gb|EFH25605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176866|gb|EFH36124.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|297576877|gb|EFH95592.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300885949|gb|EFK81152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312439049|gb|ADQ78120.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829027|emb|CBX33869.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128824|gb|EFT84823.1| hypothetical protein CGSSa03_13067 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193895|gb|EFU24289.1| hypothetical protein CGSSa00_12717 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323439802|gb|EGA97519.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O11]
 gi|329727899|gb|EGG64348.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329731950|gb|EGG68306.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   
Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 249

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKI 104
           E   ++G + V  A+ +  ++I ++  +K A   +    NL       V T   +T+ K+
Sbjct: 5   EQDVIFGRNPVMEAIKS-GKEIEKIYISKTAKGNISKIINLAKEAGIVVSTTDNETLSKL 63

Query: 105 VGKEAVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            G +  HQG+          E   LL    +  +    L++LD + DPHN+GAI+RSA A
Sbjct: 64  AGSQN-HQGIVALSAVYQYFEVEDLLEYA-EQKKEKPFLLILDEITDPHNLGAIIRSAEA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   + 
Sbjct: 122 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMKIAKVSNINNTIRNLKERGLWIVGTDVNG 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K  E+   +  +AL++G EGKG+     +    +  + M G I +LN S AA++ +Y
Sbjct: 182 GKSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASLLVY 239


>gi|239617976|ref|YP_002941298.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
           19.5.1]
 gi|239506807|gb|ACR80294.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
           19.5.1]
          Length = 250

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 8/197 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAV--RNSQLLMVLDHVNDP 144
           + ++ VPP+ +  +  +E  HQG+ +         L   LD +  +   LL++LD + DP
Sbjct: 49  YRMEVVPPEKLFNL-SREKKHQGVVINLKEFPYTSLETLLDKIMEKKRSLLVLLDRIQDP 107

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAI+RS+VA   DG+I T++ S   +  + K ++G +  IP +R+ N+   ++ +  
Sbjct: 108 HNLGAIIRSSVAAGADGVIITEKASVEVTPAVVKVSTGLVFRIPIVRVVNMARTIETLKE 167

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            GF T   + +  +P       DK ALI G EGKG+R   ++ +  +  + M   I +LN
Sbjct: 168 EGFWTYAATMEG-EPYYSVSFTDKAALIFGNEGKGIRHLVKKKSDYLVSIPMCEGIDSLN 226

Query: 265 VSNAAAVALYITQNHFA 281
           V+ +AA+ L+  +  +A
Sbjct: 227 VAASAAIMLFEYRRQWA 243


>gi|257432651|ref|ZP_05609011.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257282066|gb|EEV12201.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   
Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|317049748|ref|YP_004117396.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316951365|gb|ADU70840.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. At-9b]
          Length = 244

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H V A L  +P R  ++F L    +   +    A       V+    Q +D  V 
Sbjct: 4   IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVAALEAQGIAVQLANRQWLDSQV- 62

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +  VHQG+     P        L   L+++ N   L++LD V DPHN+GA LRSA A   
Sbjct: 63  EGGVHQGIVARVKPGKNYQEGDLPDLLESIENP-FLLILDGVTDPHNLGACLRSADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A   K A GA E++P IR++NL   ++ +  +    +G + ++   
Sbjct: 122 HAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEYQIWIVGTAGEADHT 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 182 LYQSKLPAALALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|258452736|ref|ZP_05700734.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5948]
 gi|257859609|gb|EEV82459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5948]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   
Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|289579164|ref|YP_003477791.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           italicus Ab9]
 gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           italicus Ab9]
          Length = 249

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 13/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108
           ++G + V  A+ +  ++I ++  +K A   +    NL       V T   +T+ K+ G +
Sbjct: 9   IFGRNPVMEAIKS-GKEIEKIYVSKTAKGNISKIINLAKEAGIVVSTTDNETLSKLAGSQ 67

Query: 109 AVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             HQG+          E   LL    +  +    L++LD + DPHN+GAI+RSA AF   
Sbjct: 68  N-HQGIVALSAVYQYFEVEDLLEYA-EQKKEKPFLLILDEITDPHNLGAIIRSAEAFGVH 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR +   +A + K+++GA+E++   ++SN+ + ++ +   G   IG   +  K  
Sbjct: 126 GIIIPKRRAVGVNATVVKTSAGAVEYMKIAKVSNINNTIRNLKERGLWIIGTDVNGGKSF 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E+   +  +AL++G EGKG+     +    +  + M G I +LN S AA++ +Y
Sbjct: 186 EEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIY 239


>gi|113475949|ref|YP_722010.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110166997|gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium
           erythraeum IMS101]
          Length = 288

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 122/249 (48%), Gaps = 22/249 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPPQTI 101
            +YG HTV AAL +      + L     ++ L +D                +  V  + +
Sbjct: 42  LIYGRHTVQAALKSE-----RYLNRIWIISSLRYDPRFHILLNEAKTKGTIIDEVDDRRL 96

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D+I  ++  HQG+  +  P     L  +        +  +L+V D +NDPHN+GAI+R+ 
Sbjct: 97  DQITRRKH-HQGIVAQICPYEYKELHELISQAKSKTDRSVLLVADGINDPHNLGAIIRTG 155

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G++  +R +   ++ + K A+GALE+ P  R+ NL  AL+++   GF   G  +
Sbjct: 156 EALGIQGLVIPQRRAVGITSTVTKVAAGALENFPVARVINLNSALEELKKEGFWIYGTVA 215

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +P+        I L++G+EG+GL    Q+   ++  + M G   +LNVS A  +A+Y
Sbjct: 216 KDGEPIHTVKFTGAIVLVVGSEGEGLSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIY 275

Query: 275 -ITQNHFAK 282
            I + H++K
Sbjct: 276 EIHRQHWSK 284


>gi|171463420|ref|YP_001797533.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192958|gb|ACB43919.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 255

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++LD V DPHN GA LR A     D  +  K  S S +A ++K + GA E +P I ++
Sbjct: 99  LFLILDGVTDPHNFGACLRVADGAGVDAAVIPKDRSASINATVSKVSGGAAEVMPVITVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  ++++M   G   IG   ++ K +        IA+++GAEG+G+R  T+ET   +  
Sbjct: 159 NLVRSMKEMQEAGVWLIGTDDEATKSIYDIDLTGSIAIVMGAEGEGMRRLTKETCDELVR 218

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G++ +LNVS A+ V LY
Sbjct: 219 IPMQGVVSSLNVSVASGVCLY 239


>gi|254372498|ref|ZP_04987987.1| hypothetical protein FTCG_00059 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570225|gb|EDN35879.1| hypothetical protein FTCG_00059 [Francisella novicida GA99-3549]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240


>gi|229003106|ref|ZP_04160955.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228758142|gb|EEM07338.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
          Length = 247

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+      A RN     ++LD + DPHN+G+
Sbjct: 54  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNEDPFFLILDEIEDPHNLGS 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K        N  I L++G+EGKG+     E    + HL M G + +LN S AA
Sbjct: 172 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLIHLPMVGKVTSLNASVAA 231

Query: 270 AVALY 274
           ++ +Y
Sbjct: 232 SLLMY 236


>gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Thiomonas sp. 3As]
          Length = 242

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 6/187 (3%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNI 147
           +KT+  + +  + G +  HQG+  +   L     L   LDAV  + L++ LD V DPHN+
Sbjct: 49  LKTLSAERLTALAGTDR-HQGVVAQVDDLPTVHDLHAVLDAVEGAPLVLALDGVTDPHNL 107

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILR+A A     +I  K  +   +  +A+ ASGA E +PY+ ++NL  +L ++   G 
Sbjct: 108 GAILRTADAAGVHLVIAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGL 167

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G    +   +          L++GAEG G+R   +ET   +  + M G +++LNVS 
Sbjct: 168 WVMGTDEAATDDVYAANWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSV 227

Query: 268 AAAVALY 274
           AA V LY
Sbjct: 228 AAGVCLY 234


>gi|227357121|ref|ZP_03841490.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           ATCC 29906]
 gi|227162653|gb|EEI47620.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           ATCC 29906]
          Length = 247

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALN-NPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L  +P+  ++++ L   ++        A       V+    Q +D    
Sbjct: 5   IIYGIHAVKALLERDPTHFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQT- 63

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA A    
Sbjct: 64  EGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAGVH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K A GA E +P IR++NL   L+ +       +G + ++   L
Sbjct: 124 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADHTL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 237


>gi|254373959|ref|ZP_04989441.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
 gi|151571679|gb|EDN37333.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYET 240


>gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
 gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
          Length = 297

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 9/173 (5%)

Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           A HQG+ L+  P        LL    D+ R + L++ LDH++DP N+GA++RSA AF   
Sbjct: 115 APHQGIGLKVKPYEYRHPADLLVEAEDSGRPA-LMVALDHISDPRNLGAVIRSAAAFGGH 173

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++   R S S +A+  ++++GA   +P  +  NLT  L++    G   +GL ++    L
Sbjct: 174 GVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLTRTLKEWQDRGLLLVGLDAEGDTSL 233

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  +  + +AL++G+EGKGL    +E+   +  + M G +++LNVS A  V L
Sbjct: 234 DDFVGTEPLALVVGSEGKGLSRLVRESCDVVVSIPMSGQVESLNVSVATGVVL 286


>gi|319775208|ref|YP_004137696.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
 gi|317449799|emb|CBY86007.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
          Length = 246

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 17/237 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+   ++ A  L+   LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGSVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSK 217
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +      W    +G + +  
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEVA 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 181 ETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|228989300|ref|ZP_04149291.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
 gi|228995483|ref|ZP_04155151.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|228764212|gb|EEM13091.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|228770378|gb|EEM18951.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
          Length = 212

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+      A RN     ++LD + DPHN+G+
Sbjct: 19  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNEDPFFLILDEIEDPHNLGS 76

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 77  IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 136

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K        N  I L++G+EGKG+     E    + HL M G + +LN S AA
Sbjct: 137 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLIHLPMVGKVTSLNASVAA 196

Query: 270 AVALY 274
           ++ +Y
Sbjct: 197 SLLMY 201


>gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           johnsonii SH046]
 gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           johnsonii SH046]
          Length = 249

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 123/243 (50%), Gaps = 15/243 (6%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH+V + L     ++  L   K     RL     L  PF   V+      
Sbjct: 2   AKPE--YFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQTGRDR 59

Query: 101 IDKIVGKEAVHQGL--ALETAPLLSP-TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSA 154
           ++K+ G    HQG+  A+   P+ +   L+A+       LL+ LD V DPHN+GA +R+A
Sbjct: 60  LEKMAGL-PFHQGVVAAVRPNPVFNEKDLEALLKQSPNCLLLGLDQVTDPHNLGACIRTA 118

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLS 213
            A   + +I  +  S S +    K A+G  E + +I+++NL   L ++   +  + +G  
Sbjct: 119 AAMGVEAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQIKDEFNVRVVGTM 178

Query: 214 SDSKK-PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            D K  PL+Q +     + +++GAE  GLRP TQ       ++ M G +++LNVS A  +
Sbjct: 179 LDEKALPLQQFDFTGTAVCVVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGM 238

Query: 272 ALY 274
           ALY
Sbjct: 239 ALY 241


>gi|167756030|ref|ZP_02428157.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
 gi|167704022|gb|EDS18601.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
          Length = 241

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 16/239 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK--IVGK 107
           ++YG +T+  AL    + ++ +    NA      D  +      K +P + +DK   + K
Sbjct: 4   YIYGKNTILEALKG-DKSVYTVYVQNNA-----KDNGIIEQCKRKKIPFKIVDKSEFIKK 57

Query: 108 --EAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSC 159
                HQG+  E       ++D + N+       LL++LD + DPHN+GAILR+  A   
Sbjct: 58  LGNVSHQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGV 117

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG+I  K  S   +  +AK ++GA++H+   +++NLT  L+ +    F  +G   D  + 
Sbjct: 118 DGVIIGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQD 177

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             Q   N  + +++G+EG G+    +++      L M G I +LN S A AV LY   N
Sbjct: 178 YRQVDYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHINSLNASVATAVILYQVYN 236


>gi|330686272|gb|EGG97884.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU121]
          Length = 248

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFL--STAPHQGVAALVAPYEYADFDQFLKQQQEKDGLSTVIILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S S +  +AK+++GA++H+P IR++NL   + ++ + 
Sbjct: 108 NLGSILRTADASGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKNN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEANNATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|319943471|ref|ZP_08017753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
           mirabilis ATCC 51599]
 gi|319743286|gb|EFV95691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
           mirabilis ATCC 51599]
          Length = 247

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 12/237 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           + LYG H V A L         L   +   +   R            V  V    +D++ 
Sbjct: 1   MLLYGFHAVMARLRQAPASFKSLYVDRHRDDNRVRDLLKLAQQQAVQVTRVEAGRLDRMA 60

Query: 106 GKEAVHQGLA--LETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           G +  HQG+   +ET       P L   L+       L++LD V DP N+GA LRSA   
Sbjct: 61  GGKR-HQGVVAQVETQTISTDLPTLLSDLEGRERPPFLLLLDGVTDPRNLGACLRSADGA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  K ++   + V   +ASGA E +PYI ++NL   ++++   GF+  GL+ ++ 
Sbjct: 120 GVDAVIAPKDHAAPLTDVAMHTASGAGESVPYILVTNLVRTVEQLQDAGFRVYGLADEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L +      +A+++GAE KGLR   +E   ++  + M G + +LNVS A  V LY
Sbjct: 180 ADLYRTDFAGPVAIVMGAEDKGLRRLVREQCDALVSIPMMGSVSSLNVSVATGVVLY 236


>gi|329119920|ref|ZP_08248594.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464076|gb|EGF10387.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 276

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+A           L   LD +R    L+VLD + DPHN+GA LR+A A   
Sbjct: 89  IAKGARHQGVAGFIDASRNHVHLEDVLDNLREPPFLLVLDGITDPHNLGACLRTADAMGV 148

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L ++  +G   IG  +  +  
Sbjct: 149 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLCELKEYGIWIIGTDTGGESD 208

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 209 LYHTDLPDSVAWVMGNEGEGMRRLTREHCDMLVAIPMFGTVESMNVSVSAGMVLGETR 266


>gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
 gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
          Length = 323

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTI 101
            +YG H V +AL    R + ++  T     RL +D    H           +  V P+ +
Sbjct: 71  LIYGRHPVLSALEG-ERGLNRIWIT----TRLRYDHRFHHLLLQAKENGTVIDEVEPKRL 125

Query: 102 DKIVGKEAVHQGLALETAP----LLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAV 155
           D+I  + A HQG+A + AP     LS  +   ++    +++V + + DPHN+GAI+R+A 
Sbjct: 126 DQITDR-ANHQGIAAQVAPHDYMELSDLIAQAKSVTDPVIVVAEGITDPHNLGAIIRTAE 184

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++  +R +   ++ + K A+GALE+    R+ NL+ AL+++   GF   G ++ 
Sbjct: 185 AIGAQGLVIPQRRASGITSTVMKVAAGALENFSVARVVNLSRALEELKEAGFWIYGTATT 244

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +PL     +  I L++G+EG+GL   TQ +   +  + + G   +LN S AA +ALY
Sbjct: 245 GSEPLHTVKFSGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLLGKTPSLNASVAAGMALY 303


>gi|50955381|ref|YP_062669.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951863|gb|AAT89564.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 336

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 100/195 (51%), Gaps = 14/195 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDH 140
            PV  +    +D++ G++AVHQG+AL+  P        LL  TL   RN +  L + LD 
Sbjct: 133 IPVLEIMRPELDRLAGRDAVHQGVALKVPPYEYVHPGELLDRTL---RNGETPLFVALDG 189

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+GAI+RS  AF   G+I  +R S   +A   K+++GA    P    SNLT  L+
Sbjct: 190 ITDPRNLGAIIRSTAAFGGQGVIVPQRRSAGMTASAWKTSAGAAARTPVAMASNLTQTLK 249

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                G   +GL      PL      D+ + +++G+EGKG+     ET  ++  + +   
Sbjct: 250 AFKQAGVFVLGLDGGGDTPLPGLSFADRPVVIVVGSEGKGISRLVAETCDAVVSIPIAAT 309

Query: 260 IKALNVSNAAAVALY 274
            ++LN   AA+V LY
Sbjct: 310 TESLNAGIAASVTLY 324


>gi|314937163|ref|ZP_07844510.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655782|gb|EFS19527.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           subsp. hominis C80]
          Length = 249

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           ++TVP   +D +    A HQG+A   AP      D    SQ        +++LD + DPH
Sbjct: 50  IQTVPKSKLDNLA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A   DGI+  KR S + +  +AK+++GA++H+P +R++NL+  + ++   
Sbjct: 108 NLGSIIRTADASGVDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G  +D+         +  +A+++G+EG+G+    ++       + M G + +LN 
Sbjct: 168 GYWVAGAEADNATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|152973051|ref|YP_001338197.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892665|ref|YP_002917399.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150957900|gb|ABR79930.1| Gm2251 methyltransferase of 23S rRNA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238544981|dbj|BAH61332.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 243

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
            +YG+H V A L     +  ++   K    R D    LP  H    + V  Q  ++    
Sbjct: 4   MIYGIHAVQALLERAPERFQEVYILKG---REDKRL-LPLIHALEAQGVVIQLANRQFLD 59

Query: 108 E----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A 
Sbjct: 60  EKSEGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++ 
Sbjct: 120 GVHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 180 HTLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|89075975|ref|ZP_01162347.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
 gi|89048324|gb|EAR53903.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
          Length = 244

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------PFPVKTVPPQT 100
           N  ++G+H V A L +   +  ++   K    R D D  LP           ++    + 
Sbjct: 3   NDMIFGIHAVKAVLASDPVRFIEVFVLKG---RED-DRLLPLVTELQSLGITIQEAGRKA 58

Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D  V K A HQG+     P        LD +   + S LL++LD V DPHN+GA LR+A
Sbjct: 59  LDDKV-KGASHQGIVARVRPGKQYNENDLDDLLVGKESPLLLILDGVTDPHNLGACLRNA 117

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  S   +A  +K A GA E +P +R++NL   ++ +   G   +G + 
Sbjct: 118 DAAGAVAVIVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAG 177

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q      +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+
Sbjct: 178 EATHDIYQSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLF 237


>gi|251788405|ref|YP_003003126.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya zeae Ech1591]
 gi|247537026|gb|ACT05647.1| RNA methyltransferase, TrmH family, group 3 [Dickeya zeae Ech1591]
          Length = 244

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+          V+    Q +
Sbjct: 4   IIYGIHAVKALLEQDPQRFLEVFILKGREDRRLQPLIAELEAGG-----IAVQVANRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V + AVHQG+               P L A   +  L+VLD V DPHN+GA LRSA 
Sbjct: 59  DDKV-EGAVHQGIVARVKEGRQYQENDLPGLLAALATPFLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 178 ADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|89893196|ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51]
 gi|219666469|ref|YP_002456904.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
 gi|89332644|dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536729|gb|ACL18468.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
          Length = 246

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 9/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143
            P + V    +D++  K A HQG+    AP     +D +            ++VLD V D
Sbjct: 48  IPFQFVDKAALDRLTEK-AKHQGILAYVAPREYAEVDDILALAGEKGEDPFILVLDEVED 106

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GA++R+A A    G+I  KR S S +A +AK+++GA+EH+   R+ NL   L+ + 
Sbjct: 107 PHNLGALIRTADAAGVHGVIIPKRRSVSLTATVAKTSAGAVEHVLVARVGNLVQTLKDLQ 166

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G    G  ++  +    ++   ++ +++G+EGKGL    +ET   +  L M G I +L
Sbjct: 167 KAGCWVSGAEAEGTEVYRSDLTGARV-IVIGSEGKGLSRLVKETCDEIVSLPMKGRINSL 225

Query: 264 NVSNAAAVALY 274
           N S A ++ +Y
Sbjct: 226 NASVAGSILMY 236


>gi|308188261|ref|YP_003932392.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
 gi|308058771|gb|ADO10943.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
          Length = 244

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 113/234 (48%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+H V A L  +P R  ++F L    +   +    A       ++    + +D  V 
Sbjct: 4   IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALETQGIVIQLAERKWLDSQV- 62

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  VHQG+     P         P L        L+VLD V DPHN+GA LRSA A    
Sbjct: 63  EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  K  S   +A   K ASGA E++P IR++NL   L+ +  +    +G + ++   +
Sbjct: 123 AIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTV 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 183 FQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|160899466|ref|YP_001565048.1| RNA methyltransferase [Delftia acidovorans SPH-1]
 gi|160365050|gb|ABX36663.1| RNA methyltransferase, TrmH family, group 3 [Delftia acidovorans
           SPH-1]
          Length = 263

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 80/141 (56%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY  ++
Sbjct: 101 LLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGVNATVAKVASGAAETVPYFMVT 160

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   L ++       IG S D+ K L +       AL+LGAEG G+R  T++T   +  
Sbjct: 161 NLARTLNELKERDIWIIGTSDDAPKTLYEVDLTGPTALVLGAEGDGMRQLTRKTCDELIG 220

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LNVS A+ V LY
Sbjct: 221 IPMMGAVSSLNVSVASGVCLY 241


>gi|332706005|ref|ZP_08426078.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
 gi|332355265|gb|EGJ34732.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
          Length = 347

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 128/250 (51%), Gaps = 23/250 (9%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT------- 95
           +++ E+  +YG H+V AAL N  +     L     +++L +D    H   V+        
Sbjct: 83  STEEESDLIYGRHSVIAALQNQHQ-----LNRVWIISQLRYDPRF-HSLLVQAKANGTVI 136

Query: 96  --VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHVNDPHN 146
             V P+ + +I  K   HQG+A + A      L+  +D  +      +L+  D +NDP N
Sbjct: 137 DEVAPKRLSQIT-KGGNHQGVAAQIASYNYIDLNDLIDKAKWATEQPVLLACDGINDPQN 195

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+R+A A    G++  +R +   ++ + K A+GALE  P  R+ NL++AL+++ + G
Sbjct: 196 LGAIIRTAEALGAQGLVIPQRRAVGVTSTVRKVAAGALETFPIARVVNLSNALEQLKTAG 255

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G ++ + K L +      + L++G+EG GL  ++Q     +  + + G   +LN S
Sbjct: 256 FWIYGTAAGTGKLLHKVDLTGSVVLVIGSEGNGLSLRSQSCCDMLISIPLQGKTPSLNAS 315

Query: 267 NAAAVALYIT 276
            A A+ LY T
Sbjct: 316 AATAMVLYET 325


>gi|25010279|ref|NP_734674.1| hypothetical protein gbs0204 [Streptococcus agalactiae NEM316]
 gi|23094631|emb|CAD45849.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 249

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 35/256 (13%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84
           K +   +  +  +YG+H V+ +L  N   K++             + LAT+  ++ + W 
Sbjct: 2   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVS-ISW- 59

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVL 138
                        P+ I   +    VHQG  L+ +      LS  +    N +  L+++L
Sbjct: 60  ------------TPKKILSDMTNGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILIL 107

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+G+ILR+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  
Sbjct: 108 DGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQT 167

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +    F   G   +   P  +     K+AL++G EGKG+    ++    M  + M G
Sbjct: 168 LDTLKDKDFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNG 226

Query: 259 IIKALNVSNAAAVALY 274
            +++LN S AAA+ +Y
Sbjct: 227 HVQSLNASVAAAILMY 242


>gi|291619082|ref|YP_003521824.1| RlmB [Pantoea ananatis LMG 20103]
 gi|291154112|gb|ADD78696.1| RlmB [Pantoea ananatis LMG 20103]
          Length = 259

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 118/248 (47%), Gaps = 14/248 (5%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFP 92
           F   SR  S+     ++G+H V A L  +P R  ++F L    +   +    A       
Sbjct: 9   FQPLSRLMSE----IIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVTALEAQGIV 64

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHN 146
           ++    + +D  V +  VHQG+     P         P L        L+VLD V DPHN
Sbjct: 65  IQLADRKWLDSQV-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA LRSA A     +I  K  S   +A   K ASGA E++P IR++NL   L+ +  + 
Sbjct: 124 LGACLRSADAAGAHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYN 183

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +G + ++   + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS
Sbjct: 184 IWVVGTAGEADHTVYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVS 243

Query: 267 NAAAVALY 274
            A  V L+
Sbjct: 244 VATGVCLF 251


>gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 248

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 119/244 (48%), Gaps = 18/244 (7%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH+V   L     ++  L   K     RL     L  PF   V+     +
Sbjct: 2   AKPE--YYYGVHSVETLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDS 59

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--------LMVLDHVNDPHNIGAILR 152
           ++K+ G +  HQG+     P   PTL+     QL        L+ LD V DPHN+GA +R
Sbjct: 60  LEKLAG-QPFHQGVVAAVRP--HPTLNEKDLDQLMQQSPNALLLALDQVTDPHNLGACIR 116

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG 211
           +A A     +I  +  + S +    K A+G  E + +I+++NL   L  +  +   + IG
Sbjct: 117 TAAAMGVQAVIVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHTRVIG 176

Query: 212 LSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              D K  P++Q   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  
Sbjct: 177 TMLDEKALPIQQCDFSGPVVIVMGAEDTGLRPITQSQCDQTVYIPMSGDLQSLNVSVATG 236

Query: 271 VALY 274
           +ALY
Sbjct: 237 MALY 240


>gi|77409659|ref|ZP_00786329.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae COH1]
 gi|77413808|ref|ZP_00789988.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 515]
 gi|77160170|gb|EAO71301.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 515]
 gi|77171728|gb|EAO74927.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae COH1]
          Length = 251

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 35/256 (13%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIF-------------QLLATKNALARLDWD 84
           K +   +  +  +YG+H V+ +L  N   K++             + LAT+  ++ + W 
Sbjct: 4   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVS-ISW- 61

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVL 138
                        P+ I   +    VHQG  L+ +      LS  +    N +  L+++L
Sbjct: 62  ------------TPKKILSDMTNGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILIL 109

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+G+ILR+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  
Sbjct: 110 DGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQT 169

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +    F   G   +   P  +     K+AL++G EGKG+    ++    M  + M G
Sbjct: 170 LDTLKDKDFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNG 228

Query: 259 IIKALNVSNAAAVALY 274
            +++LN S AAA+ +Y
Sbjct: 229 HVQSLNASVAAAILMY 244


>gi|311105148|ref|YP_003978001.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310759837|gb|ADP15286.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Achromobacter xylosoxidans A8]
          Length = 245

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 6/186 (3%)

Query: 96  VPPQTIDKIVGKEAVHQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           VP + +D +  +   HQG+       + A  +   LD +    LL++LD V DPHN+GA 
Sbjct: 55  VPMERLDGL-SRGTRHQGVVALAEERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  +  +   +A + + A GA + +PY+ ++NL   ++ +   G   +
Sbjct: 114 LRTADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G    +   + Q      +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+A
Sbjct: 174 GTDDQATDSMHQIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASA 233

Query: 271 VALYIT 276
           V LY T
Sbjct: 234 VCLYET 239


>gi|302332245|gb|ADL22438.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 248

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA+EH+P IR++NL   +  +   
Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|294496964|ref|YP_003560664.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|295702331|ref|YP_003595406.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
 gi|294346901|gb|ADE67230.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|294799990|gb|ADF37056.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
          Length = 247

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145
           V+ VP + I+++V  + +HQG+A + A      LD + N       S   ++LD + DPH
Sbjct: 50  VQFVPKKKIEQMV--DGIHQGVAAQVAAYQYAELDDLFNLAEKRNESPFFLLLDELEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR S   +A +AK+++GA+EH+P  R++NL+  + ++   
Sbjct: 108 NLGSIMRTADAVGAHGIIIPKRRSVGLTATVAKASTGAIEHVPVARVTNLSRTIDELKDR 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +G  +              + L++G+EGKG+    +E    +  L M G + +LN 
Sbjct: 168 GVWIVGTDAKESDDYRNLDGGMPLTLVIGSEGKGMSRLIREKCDFLVQLPMVGHVTSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLLMY 236


>gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           Y412MC10]
          Length = 256

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 131/253 (51%), Gaps = 24/253 (9%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HP 90
           Q+  +  Q E + + G H+V+ AL +  R I ++   +NA   L     LP         
Sbjct: 2   QEETYMMQEEEV-VAGKHSVTEALKS-GRTINKIWIAENAQKHL----TLPIIAEAKKLG 55

Query: 91  FPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVN 142
             ++ V  + +D++V G +  HQG+  + AP     +D +  +         L++LD + 
Sbjct: 56  IVIQHVDKRKLDQMVPGVQ--HQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIE 113

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+G+ILR+A      G+I  KR S   +A ++K+++GA+E++P  R++NL   + ++
Sbjct: 114 DPHNLGSILRTADCTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVTNLGQTIDQL 173

Query: 203 HSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              G   +G   D+ + L + E+ +  +A+++G E KG+    +E    +  L M G I 
Sbjct: 174 KEMGVWVVGTVVDAVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKIN 233

Query: 262 ALNVSNAAAVALY 274
           +LN S AA V +Y
Sbjct: 234 SLNASVAAGVVMY 246


>gi|93004896|ref|YP_579333.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
           K5]
 gi|92392574|gb|ABE73849.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
           K5]
          Length = 256

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 98/175 (56%), Gaps = 12/175 (6%)

Query: 111 HQGLALETAPL------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+ L   PL      L  TL A R+  LL+VLD + D HN GA LR+AVA   D +I 
Sbjct: 70  HQGVVLNARPLGFADEGLLDTL-AGRDDCLLLVLDQITDAHNFGACLRTAVAMGVDAVIC 128

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQE 223
            K ++ S +  +AK + GA E +P + ++NL   L K+ + G    G + ++  KP+   
Sbjct: 129 PKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNANAKPIHAA 188

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274
               K A+I+G+EG+G+R  T E+   + ++ M     G +++LNVS A  +ALY
Sbjct: 189 DLTGKTAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALY 243


>gi|298693863|gb|ADI97085.1| rRNA methylase [Staphylococcus aureus subsp. aureus ED133]
          Length = 248

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFLA--NAPHQGVAALIAPYEYADFDQFLKQQKEKGGLSTVLILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   DG+I  KR S + +  +AK+++GA+EH+P IR++NL   +  +   
Sbjct: 108 NLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  +A+++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWVAGTEANNATDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|208778923|ref|ZP_03246269.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
           FTG]
 gi|208744723|gb|EDZ91021.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
           FTG]
          Length = 248

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 83/143 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD+V DPHN GA +RSA +   D II  K  S   +A + K A GA EH   + ++
Sbjct: 98  FILILDNVQDPHNFGACIRSAHSAGIDFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVT 157

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  A++K+   G   IGL+ ++   L      D +A++ GAEG G+R +T+ +   +A 
Sbjct: 158 NLARAIEKLKQLGVWIIGLAGEADDSLYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAK 217

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           L M G + +LNVS A  +ALY T
Sbjct: 218 LPMLGEVSSLNVSVATGIALYET 240


>gi|237734015|ref|ZP_04564496.1| 23S rRNA methyltransferase [Mollicutes bacterium D7]
 gi|229382841|gb|EEO32932.1| 23S rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 244

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 16/239 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK--IVGK 107
           ++YG +T+  AL    + ++ +    NA      D  +      K +P + +DK   + K
Sbjct: 7   YIYGKNTILEALKG-DKSVYTVYVQNNA-----KDNGIIEQCKRKKIPFKIVDKSEFIKK 60

Query: 108 --EAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSC 159
                HQG+  E       ++D + N+       LL++LD + DPHN+GAILR+  A   
Sbjct: 61  LGNVSHQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGV 120

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG+I  K  S   +  +AK ++GA++H+   +++NLT  L+ +    F  +G   D  + 
Sbjct: 121 DGVIIGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQD 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             Q   N  + +++G+EG G+    +++      L M G + +LN S A AV LY   N
Sbjct: 181 YRQVDYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHVNSLNASVATAVILYQVYN 239


>gi|85858124|ref|YP_460326.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721215|gb|ABC76158.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
          Length = 249

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 8/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVND 143
            PV+      +D + G  A HQG+           LDAV  ++       L+++LD + D
Sbjct: 47  IPVEIRERSFLDDLAG-HASHQGVLGVCTAYRYQDLDAVIANRHPSCPYDLVLILDGILD 105

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GA++RSA  F  +GII  +R + S +  + K+++GA  HIP  R++NL  AL ++ 
Sbjct: 106 PHNLGALIRSAHCFGANGIILPERRAASVTGTVIKTSAGAARHIPIARVANLARALDELK 165

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + GF   G  + + + +        + L++G E KGLRP  ++    +  + M G I +L
Sbjct: 166 TKGFWIFGADARADQSVSDPDYQGAVGLVMGGESKGLRPLIRKKCDDLISIPMLGKIDSL 225

Query: 264 NVSNAAAVALY 274
           NVS +  + L+
Sbjct: 226 NVSVSGGIILH 236


>gi|42518495|ref|NP_964425.1| hypothetical protein LJ0402 [Lactobacillus johnsonii NCC 533]
 gi|227888793|ref|ZP_04006598.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
 gi|268318914|ref|YP_003292570.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|41582780|gb|AAS08391.1| hypothetical protein LJ_0402 [Lactobacillus johnsonii NCC 533]
 gi|227850630|gb|EEJ60716.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397289|emb|CAX66303.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|329666766|gb|AEB92714.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 251

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           F+YG H     L     N   K+F     +   A   +         V+  P   +D++V
Sbjct: 8   FVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQMV 67

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E  HQGL L  AP     LD + +          +++LD + DPHN+G+ILR+  A  
Sbjct: 68  NHEN-HQGLVLTVAPFEYADLDELLDKFDQEGKEPFILMLDSIEDPHNLGSILRTCDATG 126

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  KR +   ++V+AK+++GA++++P  R++NL    + +   G+   G + + + 
Sbjct: 127 VDAVIIPKRRASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKMLKKRGYWIFGTAMEGED 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   K  K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 187 YRKWNAKG-KTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|228475266|ref|ZP_04059991.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           SK119]
 gi|228270731|gb|EEK12140.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           SK119]
          Length = 249

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           ++TVP   +D +    A HQG+A   AP      D    SQ        +++LD + DPH
Sbjct: 50  IQTVPKSKLDNLA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A   DG++  KR S + +  +AK+++GA++H+P +R++NL+  + ++   
Sbjct: 108 NLGSIIRTADASGVDGVVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   G  +D+         +  +A+++G+EG+G+    ++       + M G + +LN 
Sbjct: 168 GYWVAGAEADNATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|217971920|ref|YP_002356671.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS223]
 gi|217497055|gb|ACK45248.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS223]
          Length = 246

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++G+H V A L +   +I +L L       RL   AN    F   ++    + +D    
Sbjct: 6   IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALDD-KA 64

Query: 107 KEAVHQGLA--LETAPLLSPT-LDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + + HQG+   ++ A +L+   LD +  N++   L++LD V DPHN+GA LR+A A    
Sbjct: 65  ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++   L
Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  + L+
Sbjct: 185 YQADLKGSLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLF 238


>gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis
           SP1PR4]
          Length = 263

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 12/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVG 106
            LYG+H V  A+ +  R +  + ++ +   ARLD   ++       + + P   ID++  
Sbjct: 3   LLYGLHPVQEAVRSRPRDLDHITISRERKDARLDALVESARSAGIRITSEPRAQIDRM-A 61

Query: 107 KEAVHQGLAL---ETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K  +HQG+     E   L    L AV+      +  + LD V DPHN+GA+LR+A     
Sbjct: 62  KTEMHQGVIAFLRERRALAVEDLLAVQKPDGQRRFFLALDGVEDPHNLGALLRTADGAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DGI+  +R S   +AV+AK+++GA EH+   +++NL  AL++M       IGL       
Sbjct: 122 DGILLPERRSAPITAVVAKTSAGATEHVRIAKVTNLVRALERMKKDNIWVIGLDERGTPD 181

Query: 220 LEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +       L+LG+EG GL    ++T   +  + M G + +LNVS A AV +Y
Sbjct: 182 YTDFDFAPTDCVLVLGSEGAGLHDLVKKTCDYLLRIPMAGGVSSLNVSVAGAVVMY 237


>gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
           27678]
 gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
 gi|171277540|gb|EDT45201.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
           27678]
 gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
          Length = 329

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+ +IGL       + E   + D + ++LG+EG GL    + T   +A
Sbjct: 236 NLTKAIESLKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRSTCDVIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M  ++++LN S AA + LY
Sbjct: 296 GIPMSSMVESLNASVAAGITLY 317


>gi|116512750|ref|YP_811657.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108404|gb|ABJ73544.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 242

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 25/240 (10%)

Query: 50  FLYGVHTVSAALNNP-SRKIF--QLLATKNA-----LARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V+ ALN     K++  + L  KN      LAR+           +   P   +
Sbjct: 6   LIYGLHAVTEALNGDLVNKLYVQEDLRGKNVEKIKELARI-------KKVNISWTPKTEL 58

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           +K+  +  VHQG     +         L P L A +    +++LD + DPHN+G+I R+A
Sbjct: 59  NKLT-ENGVHQGFMARVSEFAYADLATLLPEL-AEKAEATILILDELTDPHNLGSIARTA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D II  K  +   + +  K+++GAL+H+P +R++NL+  L K+ S GF   G   
Sbjct: 117 DATGVDAIIIPKHRAVGITPIAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDM 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D     +   K  KIALI+G EG G+    ++    M  + M G +++LN S AA++ +Y
Sbjct: 177 DGTVYSKWNTKG-KIALIIGNEGHGIGHNLKKQVDEMITIPMVGHVQSLNASVAASILMY 235


>gi|237736329|ref|ZP_04566810.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229421677|gb|EEO36724.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 235

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 83/140 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++LD + DP N GA++RSA  F   GII  +R +   +  + K+++GA+E++  ++++
Sbjct: 89  IVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTGAIEYVDIVKVT 148

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N++DA+ K+    +   G   +  K   QE    + AL+LG+EG G+R K +E+   +  
Sbjct: 149 NISDAISKLKKLDYWVYGAEGEGSKDYSQEKYPSRTALVLGSEGNGIRKKVKESCDVLIK 208

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G I +LNVS A  + L
Sbjct: 209 IPMYGKINSLNVSVAGGIIL 228


>gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           HGF5]
 gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           HGF5]
          Length = 250

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 23/244 (9%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQ 99
           E   + G H+V+ AL +  R I ++   +NA   L     LP           ++ V  +
Sbjct: 4   EEEVVAGKHSVTEALKS-GRTINKIWIAENAQKHL----TLPIIAEAKKLGIVIQHVDKR 58

Query: 100 TIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAIL 151
            +D++V G +  HQG+  + AP     +D +  +         L++LD + DPHN+G+IL
Sbjct: 59  KLDQMVPGVQ--HQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSIL 116

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G+I  KR S   +A ++K+++GA+E++P  R++NL   + ++   G   +G
Sbjct: 117 RTADCTGAHGVILPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVG 176

Query: 212 LSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              D+ + L + E+ +  +A+++G E KG+    +E    +  L M G I +LN S AA 
Sbjct: 177 TVVDAVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAG 236

Query: 271 VALY 274
           V +Y
Sbjct: 237 VVMY 240


>gi|46906474|ref|YP_012863.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|46879738|gb|AAT03040.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           serotype 4b str. F2365]
          Length = 251

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q I+K+V     HQG+A + A      LD       A       ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +
Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSCLVREKCDFLVHLPMRGKVTS 228

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 229 LNASVAASLLLY 240


>gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           dentium JCVIHMP022]
 gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           dentium JCVIHMP022]
          Length = 329

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 176 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 235

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+ +IGL       + E   + D + ++LG+EG GL    + T   +A
Sbjct: 236 NLTKAIESLKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNGLSRLVRSTCDVIA 295

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M  ++++LN S AA + LY
Sbjct: 296 GIPMSSMVESLNASVAAGITLY 317


>gi|295111122|emb|CBL27872.1| rRNA methylase, putative, group 3 [Synergistetes bacterium SGP1]
          Length = 305

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 125/246 (50%), Gaps = 10/246 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTV-SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--K 94
           ++S     P +   +G   V     N PSR    L+A       LD   +L     V  +
Sbjct: 46  RRSAERPLPPDDVCWGRQPVLDLVRNTPSRCTRLLIANNVRPPYLDELVDLARAGRVVYQ 105

Query: 95  TVPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAV--RNSQLLMVLDHVNDPHNIG 148
            V P+ +DK+   E  HQG+A    ET P+ L P L A+      L++VLDHV DPHN+G
Sbjct: 106 LVAPEALDKLCPGER-HQGVACRLTETVPVDLEPFLKALPAEAPALIVVLDHVEDPHNLG 164

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA A      + ++R S      + K+++GA   +P I + N+   L ++ + GF 
Sbjct: 165 AIVRSAEAAGAAAAVYSRRRSALPGGTVVKTSAGASLRLPMIPVVNVVRTLAQLQAAGFW 224

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           T+GL   +   L ++    ++AL++GAEG+GL     E+   +  + + G + +LN S A
Sbjct: 225 TVGLEGRAGASLWEDGLPARLALVVGAEGEGLSRLVGESCDQLLRIPIQGGVGSLNASVA 284

Query: 269 AAVALY 274
           AA  ++
Sbjct: 285 AAFGMF 290


>gi|297621986|ref|YP_003710123.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
           chondrophila WSU 86-1044]
 gi|297377287|gb|ADI39117.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
           chondrophila WSU 86-1044]
          Length = 242

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 4/191 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAI 150
           +K    Q +  +V  ++ HQ        + SP L      N +L+++LD++NDP N+GAI
Sbjct: 48  IKLASKQKLFDLVNSDS-HQSYVALVKAVDSPDLKQFLRENHRLVLMLDNINDPQNLGAI 106

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG-FQT 209
           LR+A  F  D +I +K    S +   AK+  GA E +P I +SNL + ++K    G F  
Sbjct: 107 LRAAECFGVDAVIWSKNRGCSLTPSAAKAGVGASELVPTIVVSNLAETVKKFQKSGYFAV 166

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               SD   PL      +K  LI+G+EGKG++P   + A    ++ M G I +LNVS A 
Sbjct: 167 TAEISDRASPLNAFQFPEKTLLIMGSEGKGIQPLISKLADEQVYIPMSGKIDSLNVSQAT 226

Query: 270 AVALYITQNHF 280
           AV L   Q  F
Sbjct: 227 AVLLSHYQKCF 237


>gi|217965671|ref|YP_002351349.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           HCC23]
 gi|217334941|gb|ACK40735.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           HCC23]
 gi|307569780|emb|CAR82959.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           L99]
          Length = 251

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q I+K+V     HQG+A + A      LD       A       ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +
Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 229 LNASVAASLLLY 240


>gi|85058322|ref|YP_454024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sodalis glossinidius
           str. 'morsitans']
 gi|84778842|dbj|BAE73619.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 245

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTVPPQT 100
            +YG+H V A L    ++   +   K        D     P           ++ V  Q 
Sbjct: 4   IIYGIHAVQALLERDPQRFLDVYLLKGR------DDRRLQPLLQQLENAGIVIQMVSRQW 57

Query: 101 IDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           +D+   + AVHQG+               P L   + + LL+VLD V DPHN+GA LR A
Sbjct: 58  LDE-KAEGAVHQGIVARVQAGWQYQENDLPALLTQQAAPLLLVLDGVTDPHNLGACLRCA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  +   +A   K ASGA E +P IR++NL   L+ +       +G + 
Sbjct: 117 DAAGVHAVIVPRDRAAPLNATAKKVASGAAETVPLIRVTNLARTLRLLQEHNVWIVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS AA V+L+
Sbjct: 177 EADHHLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVAAGVSLF 236


>gi|258645874|ref|ZP_05733343.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
           15470]
 gi|260403247|gb|EEW96794.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
           15470]
          Length = 282

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 13/263 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA- 77
           + K R   +  +  + F+   R   + E  F+ G ++V  +L     +K+F     K+  
Sbjct: 18  HEKRRSGDQSIRGERGFSSGGRRKEE-ETCFIGGRNSVLESLRAGQVKKVFIKSGKKDGR 76

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV-HQGLALETAPLLSPTLDAV-----RN 131
           L  L  +A       ++T   +T+D++   E V HQG+A    P     L+ V     R 
Sbjct: 77  LLALAEEAERLGVAAIET-EERTLDRLT--EGVRHQGVAASLKPYAYADLEEVLSSCERK 133

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL++LD V D  NIGAI+R+A       ++  K  S   +A   K+ASGA  ++P  +
Sbjct: 134 DPLLILLDGVEDVRNIGAIVRTAECAGAAAVLLPKHRSSPVTAAAMKTASGAFAYLPVCQ 193

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           I N+   L+K+   GF  +G   D     + ++K   + +++GAEGKG+ P T+      
Sbjct: 194 IGNIRQTLEKLKERGFWAVGADMDGGDLYQADLKG-PLVIVMGAEGKGISPLTKRMCDFC 252

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M G + +LNVS AAA+ +Y
Sbjct: 253 VRIPMRGKVSSLNVSVAAALLMY 275


>gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 378

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 7/173 (4%)

Query: 109 AVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+A +  P     L D V  S+      +L+VLD + DPHN+GAI RS  AF   G
Sbjct: 168 ANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIARSVEAFGMQG 227

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R +   ++ + K A+GAL  +P  R+ NL  AL+ +   GF   G +S    P+ 
Sbjct: 228 MVIPQRRAAGVTSTVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYGTTSRGADPIY 287

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  IAL++G+EG+G+   TQ     +  + + G  ++LN S AA +ALY
Sbjct: 288 SADFQRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGIALY 340


>gi|293393205|ref|ZP_06637520.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
           odorifera DSM 4582]
 gi|291424351|gb|EFE97565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
           odorifera DSM 4582]
          Length = 243

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEATG-----IVIQVANRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           D  V + AVHQG+              L   L++V ++  L+VLD V DPHN+GA LRSA
Sbjct: 59  DDKV-EGAVHQGIVARVREGRQYQENDLPGLLESV-DTPFLLVLDGVTDPHNLGACLRSA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + 
Sbjct: 117 DAAGVHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQELNVWVVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 177 EADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLF 236


>gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205]
 gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205]
          Length = 249

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 118/244 (48%), Gaps = 18/244 (7%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH+V + L     ++  L   K     RL     L  PF   V+     +
Sbjct: 2   AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILALAEPFGISVQKASRDS 59

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--------LMVLDHVNDPHNIGAILR 152
           ++K+ G    HQG+     P   PTL+     QL        L+ LD V DPHN+GA +R
Sbjct: 60  LEKLAGM-PFHQGVVAAVRP--HPTLNEKDLDQLMQQHPDALLLALDQVTDPHNLGACIR 116

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG 211
           +A A     +I  +  S S +    K A+G  E + +I+++NL   L  +  +   + IG
Sbjct: 117 TAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIG 176

Query: 212 LSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              D K  P++Q   +  + +++GAE  GLRP TQ        + M G +++LNVS A  
Sbjct: 177 TMLDEKALPIQQCDFSGSVVIVMGAEDTGLRPITQSQCDQTVFIPMAGDLQSLNVSVATG 236

Query: 271 VALY 274
           +ALY
Sbjct: 237 MALY 240


>gi|224498913|ref|ZP_03667262.1| hypothetical protein LmonF1_04098 [Listeria monocytogenes Finland
           1988]
 gi|255028569|ref|ZP_05300520.1| hypothetical protein LmonL_04051 [Listeria monocytogenes LO28]
          Length = 221

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q I+K+V     HQG+A + A      LD       A       ++LD + DPH
Sbjct: 24  VQFVPKQKIEKVV--SGAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 81

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 82  NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 141

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +
Sbjct: 142 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 198

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 199 LNASVAASLLLY 210


>gi|163857018|ref|YP_001631316.1| putative tRNA/rRNA methyltransferase [Bordetella petrii DSM 12804]
 gi|163260746|emb|CAP43048.1| putative tRNA/rRNA methyltransferase [Bordetella petrii]
          Length = 245

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 5/169 (2%)

Query: 111 HQGL-ALETAPLLS----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+ AL    LL+      LD +    LL+VLD V DPHN+GA LR+A A     ++  
Sbjct: 69  HQGVVALAEERLLAVDVDEVLDTIEGPALLLVLDGVTDPHNLGACLRTADAAGVHAVVAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   ++ + + A GA + +PYI ++NL   L+ +   G   +G    +   L     
Sbjct: 129 RDRAVGLNSTVQRVACGAADTVPYITVTNLARTLRGLKERGVWVVGTDDQAAGSLHTVDA 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY
Sbjct: 189 RQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLY 237


>gi|91791876|ref|YP_561527.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           denitrificans OS217]
 gi|91713878|gb|ABE53804.1| RNA methyltransferase TrmH, group 3 [Shewanella denitrificans
           OS217]
          Length = 246

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           F+YG+H + + L +   +I +L   +    + LA L   A        +    +T+D+  
Sbjct: 6   FIYGIHAIESLLTHSPERILELWVLQGRDDDRLAPL-LKAAQDFGCTAQRATKKTLDE-K 63

Query: 106 GKEAVHQGLA--LETAPLLSPT-LDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159
              + HQG+   ++ A +L+   LDA+ +S     L++LD V DPHN+GA LR+A A   
Sbjct: 64  ADSSQHQGVVARVQAAKVLAENELDALLDSTEVPFLLILDGVTDPHNLGACLRNADAAGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII  K  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++   
Sbjct: 124 QGIIVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMRHLQDRGVWIVGTAGEADGA 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +A+ +GAE KGLR  ++E    +  + M G + +LNVS A  V L+
Sbjct: 184 LYQAELTGPLAIAMGAEDKGLRRLSREACDKLVSIPMAGSVSSLNVSVATGVCLF 238


>gi|315274658|ref|ZP_07869498.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
           S4-120]
 gi|313615715|gb|EFR89003.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
           S4-120]
          Length = 251

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q I+K+V     HQG+A + A      LD       A       ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +
Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 229 LNASVAASLLLY 240


>gi|114319742|ref|YP_741425.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226136|gb|ABI55935.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 246

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETA---PL----LSPTLDAVRNSQLLMVLDHVNDPH 145
           ++ V  + +D++  +  VHQG+A+      PL    L   LD +     L+VLD V DPH
Sbjct: 52  IQRVSRKQLDELT-EGGVHQGVAIRYRGPRPLDDNDLDACLDGLSGPAFLLVLDQVQDPH 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA LRSA A    G+I  +  +   + V+ K +SGA   +PY +++NL   L  +   
Sbjct: 111 NLGACLRSAEAAGVHGVIAPRDRAAGLTPVVHKVSSGAAARVPYFQVTNLARTLAGLRDR 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +G + ++     +      +AL +GAEG+GLR  T+E    + H+ M G +++LNV
Sbjct: 171 GIWLVGAAGEAGAAHWEADLTGPLALCMGAEGRGLRRLTREACDLLVHIPMAGRVESLNV 230

Query: 266 SNAAAVALY 274
           S A  V L+
Sbjct: 231 SVATGVVLW 239


>gi|312869725|ref|ZP_07729872.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
           PB013-T2-3]
 gi|311094774|gb|EFQ53071.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
           PB013-T2-3]
          Length = 248

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V TVP   +D++   +  HQG+AL  A      LD +             ++LD + DPH
Sbjct: 53  VSTVPKTKLDQLTDHQN-HQGVALAVAAYQYADLDDLFANAAQKHEDPFFLILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  +R +   ++V+AK+++GALEH+P  R++NL    +++   
Sbjct: 112 NLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLVQTAKELKDR 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G     +     +  +  +AL++G EGKG+ P  +++   M  + M G +++LN 
Sbjct: 172 GVWLFGTDMKGRDYRTWD-AHGAVALVIGNEGKGISPLLKKSCDEMLTIPMIGHVQSLNA 230

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 231 SVAASLLIY 239


>gi|16799350|ref|NP_469618.1| hypothetical protein lin0273 [Listeria innocua Clip11262]
 gi|16802287|ref|NP_463772.1| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e]
 gi|47097641|ref|ZP_00235161.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|226222870|ref|YP_002756977.1| Conserved hypothetical proteins like to B. subtilis YacO protein
           [Listeria monocytogenes Clip81459]
 gi|254825715|ref|ZP_05230716.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254828701|ref|ZP_05233388.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254831934|ref|ZP_05236589.1| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S]
 gi|254900578|ref|ZP_05260502.1| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161]
 gi|254913471|ref|ZP_05263483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932460|ref|ZP_05265819.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254937948|ref|ZP_05269645.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|254991759|ref|ZP_05273949.1| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL
           J2-064]
 gi|255022535|ref|ZP_05294521.1| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL
           J1-208]
 gi|255027363|ref|ZP_05299349.1| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL
           J2-003]
 gi|255520315|ref|ZP_05387552.1| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL
           J1-175]
 gi|284800536|ref|YP_003412401.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
 gi|284993722|ref|YP_003415490.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
 gi|290892618|ref|ZP_06555611.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|16409606|emb|CAD00768.1| lmo0241 [Listeria monocytogenes EGD-e]
 gi|16412702|emb|CAC95506.1| lin0273 [Listeria innocua Clip11262]
 gi|47013985|gb|EAL04998.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|225875332|emb|CAS04029.1| Conserved hypothetical proteins like to B. subtilis YacO protein
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258601106|gb|EEW14431.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258610557|gb|EEW23165.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|284056098|gb|ADB67039.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
 gi|284059189|gb|ADB70128.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
 gi|290557927|gb|EFD91448.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|293584016|gb|EFF96048.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293591479|gb|EFF99813.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293594959|gb|EFG02720.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|328476082|gb|EGF46791.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 220]
 gi|332310652|gb|EGJ23747.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           Scott A]
          Length = 251

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q I+K+V     HQG+A + A      LD       A       ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +
Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 229 LNASVAASLLLY 240


>gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
           DSM 20213]
 gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
           DSM 20213]
          Length = 332

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 177 LFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVARVV 236

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+  +GL     K + E   + D + ++LG+EG GL    +E+  ++A
Sbjct: 237 NLTKAIEGLKERGYYVVGLDGGGDKLVGETGFETDPLVVVLGSEGSGLSRLVRESCDAIA 296

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + +   +++LN S AA ++LY
Sbjct: 297 GIPISSSVESLNASVAAGISLY 318


>gi|156744301|ref|YP_001434430.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156235629|gb|ABU60412.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus
           castenholzii DSM 13941]
          Length = 248

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 9/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNS-QLLMVLDHVND 143
            PV+ +  + +D+ +  +A HQG+ALE        LD        RN   LL++LDH+ D
Sbjct: 49  VPVERIDRRELDRRL-LDANHQGVALECGDYPYVDLDDCLTLAEERNEPALLLMLDHIQD 107

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+A      G+I   R +   +  +  +++GA+EH+  + +SNL   ++++ 
Sbjct: 108 PQNVGTLLRTAEVVGVHGVIIPGRRAAEITPAVVNASAGAVEHLRIVVVSNLAATIERVQ 167

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G   +G+  D +  +  E+  D  + L+LGAEG GL   T+E    +  L M G I +
Sbjct: 168 HAGVWVVGVEDDERARVFDEVDLDLPLTLVLGAEGSGLARLTRERCDFLVRLPMRGRIAS 227

Query: 263 LNVSNAAAVALY 274
           LNV+ A ++ LY
Sbjct: 228 LNVAVAGSIVLY 239


>gi|296136581|ref|YP_003643823.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
           K12]
 gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
           K12]
          Length = 242

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 6/187 (3%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNI 147
           +KT+  + +  + G +  HQG+  +   L     +   LDAV  + L++ LD V DPHN+
Sbjct: 49  LKTLSAERLTALAGTDR-HQGVVAQVDDLPTVHDVHAVLDAVEGAPLVLALDGVTDPHNL 107

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILR+A A     +I  K  +   +  +A+ ASGA E +PY+ ++NL  +L ++   G 
Sbjct: 108 GAILRTADAAGVHLVIAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGL 167

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G    +   +          L++GAEG G+R   +ET   +  + M G +++LNVS 
Sbjct: 168 WVMGTDEAATDDVYAAKWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSV 227

Query: 268 AAAVALY 274
           AA V LY
Sbjct: 228 AAGVCLY 234


>gi|116618911|ref|YP_819282.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097758|gb|ABJ62909.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 249

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 14/174 (8%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ L  A     ++D +         +   ++LD + DPHN+G+ILR+A A    GII
Sbjct: 71  HQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAAGVHGII 130

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPL 220
             KR +   +A +AK+++GA+EH+P  R++NL    + L+K + W F T  ++ D  +  
Sbjct: 131 IPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGT-DMAGDDYRRW 189

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    N  +ALI+G EG+G+ P  ++    M  + M G +++LN S AA++ +Y
Sbjct: 190 D---ANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIY 240


>gi|319654849|ref|ZP_08008924.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317393412|gb|EFV74175.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 247

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V+ VP + ID +   E  HQG+  + A      +D +         +   ++LD + DPH
Sbjct: 50  VQFVPKKKIDGMA--EGNHQGVIAQVAAYQYAEIDDLFAAAEKKNEAAFFLLLDEIEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP +R++N+   + ++   
Sbjct: 108 NLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEYIPVVRVTNMARTIDELKER 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  +  K+   Q      + L++G+EGKG+    ++    + +L M G + +LN 
Sbjct: 168 GVWIAGTDAKGKQDFRQMDGTMPLGLVIGSEGKGMGRLIRDKCDFLINLPMAGHVTSLNA 227

Query: 266 SNAAAVALY 274
           S AAA+ +Y
Sbjct: 228 SVAAALLMY 236


>gi|284043154|ref|YP_003393494.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
           DSM 14684]
 gi|283947375|gb|ADB50119.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
           DSM 14684]
          Length = 256

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 114/243 (46%), Gaps = 13/243 (5%)

Query: 43  TSQPENL-----FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVK 94
           T +P  L      LYG + V  AL   SR++  + AT +A+    W A + H      V 
Sbjct: 9   TREPRTLPDDVTILYGRNAVHEALRG-SREVQHIWATAHAVEE-PWLAAVAHDASAVDVN 66

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILR 152
            V      +       HQG+  + AP     +D +   +  L++ LD + DP N+GAI R
Sbjct: 67  VVADGGWIERRSGSPDHQGVCAQVAPFRYAYVDELLAVEHPLIVALDEIQDPQNLGAIAR 126

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G++   R S   +  + K+++GA+EH+P  R  NL D L      G    G 
Sbjct: 127 TAECAGATGLVIPARRSADVTPAVCKASAGAVEHLPIARARNLADFLGDARGVGAWVYGA 186

Query: 213 SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             D   P    +     + L+LG+EG+GLRP+   +  ++  L + G I +LNVS AA+ 
Sbjct: 187 EGDGGVPYTGVDYSGPGVVLVLGSEGRGLRPRVAASCDALIALPLRGRIGSLNVSAAASA 246

Query: 272 ALY 274
            LY
Sbjct: 247 LLY 249


>gi|294626313|ref|ZP_06704915.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665594|ref|ZP_06730874.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599314|gb|EFF43449.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604643|gb|EFF48014.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 249

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLL---ATKN-ALARLDWDANLPHPFPVKTVPPQTID 102
           +N ++ GV+ V++++ N +  + ++L    +KN  L  ++  A       V+ V  Q +D
Sbjct: 4   QNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQAR-RKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLIEAAAGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + I  + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIAVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLF 240


>gi|22124552|ref|NP_667975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis KIM
           10]
 gi|45440391|ref|NP_991930.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51594785|ref|YP_068976.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809893|ref|YP_653809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Antiqua]
 gi|108813450|ref|YP_649217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Nepal516]
 gi|145600840|ref|YP_001164916.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Pestoides F]
 gi|150260575|ref|ZP_01917303.1| putative methylase [Yersinia pestis CA88-4125]
 gi|153949503|ref|YP_001402598.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419936|ref|YP_001605270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Angola]
 gi|165926787|ref|ZP_02222619.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936560|ref|ZP_02225128.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011869|ref|ZP_02232767.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213970|ref|ZP_02240005.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400679|ref|ZP_02306188.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419264|ref|ZP_02311017.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423260|ref|ZP_02315013.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467834|ref|ZP_02332538.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis FV-1]
 gi|170026005|ref|YP_001722510.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|186893793|ref|YP_001870905.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927584|ref|YP_002345459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
 gi|229836642|ref|ZP_04456808.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
 gi|229840254|ref|ZP_04460413.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842332|ref|ZP_04462487.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903929|ref|ZP_04519042.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
 gi|270489084|ref|ZP_06206158.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
           D27]
 gi|294502489|ref|YP_003566551.1| putative methylase [Yersinia pestis Z176003]
 gi|52783320|sp|Q8ZIV4|RLMB_YERPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21957351|gb|AAM84226.1|AE013666_6 hypothetical protein y0638 [Yersinia pestis KIM 10]
 gi|45435247|gb|AAS60807.1| putative methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51588067|emb|CAH19673.1| putative methylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777098|gb|ABG19617.1| methylase [Yersinia pestis Nepal516]
 gi|108781806|gb|ABG15864.1| putative methylase [Yersinia pestis Antiqua]
 gi|115346195|emb|CAL19063.1| putative methylase [Yersinia pestis CO92]
 gi|145212536|gb|ABP41943.1| methylase [Yersinia pestis Pestoides F]
 gi|149289983|gb|EDM40060.1| putative methylase [Yersinia pestis CA88-4125]
 gi|152960998|gb|ABS48459.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352751|gb|ABX86699.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis
           Angola]
 gi|165915676|gb|EDR34285.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921410|gb|EDR38634.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989228|gb|EDR41529.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204765|gb|EDR49245.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963258|gb|EDR59279.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050047|gb|EDR61455.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057430|gb|EDR67176.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752539|gb|ACA70057.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis YPIII]
 gi|186696819|gb|ACC87448.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679699|gb|EEO75802.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
 gi|229690642|gb|EEO82696.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696620|gb|EEO86667.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706326|gb|EEO92334.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
 gi|262360520|gb|ACY57241.1| putative methylase [Yersinia pestis D106004]
 gi|262364467|gb|ACY61024.1| putative methylase [Yersinia pestis D182038]
 gi|270337588|gb|EFA48365.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
           D27]
 gi|294352948|gb|ADE63289.1| putative methylase [Yersinia pestis Z176003]
 gi|320013752|gb|ADV97323.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 246

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELE-----AAGLVIQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D  V +  VHQG+               P L     +  L+VLD V DPHN+GA LRSA 
Sbjct: 59  DSQV-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + +
Sbjct: 118 AAGVHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 178 ADHTLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|227432701|ref|ZP_03914673.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351539|gb|EEJ41793.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 249

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 99/174 (56%), Gaps = 14/174 (8%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ L  A     ++D +         +   ++LD + DPHN+G+ILR+A A    GII
Sbjct: 71  HQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAAGVHGII 130

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPL 220
             KR +   +A +AK+++GA+EH+P  R++NL    + L+K + W F T  ++ D  +  
Sbjct: 131 IPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGT-DMAGDDYRRW 189

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    N  +ALI+G EG+G+ P  ++    M  + M G +++LN S AA++ +Y
Sbjct: 190 D---ANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIY 240


>gi|226326635|ref|ZP_03802153.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
 gi|225204856|gb|EEG87210.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
          Length = 247

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 20/239 (8%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L  +P+R  +++ L   ++      +  L+    L      + +  QT 
Sbjct: 5   IIYGIHAVKALLERDPARFKEVYVLKGREDRRLTPVIHELEAQGILVQVANRQWLDSQT- 63

Query: 102 DKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA 
Sbjct: 64  -----EGAVHQGIIAKVKPGRQYQEQDLPDLLAKVGTPFLLVLDGVTDPHNLGACLRSAD 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S   +A   K A GA E +P I+++NL   L+ +       +G + +
Sbjct: 119 AAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIKVTNLARTLRFLQEENVWIVGTAGE 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 179 ADHTLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLF 237


>gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
          Length = 229

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 90/170 (52%), Gaps = 6/170 (3%)

Query: 111 HQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQGL     P   L    LD   A     LL+VLD V DPHN+GA LR+A A     +I 
Sbjct: 50  HQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIV 109

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++   + Q  
Sbjct: 110 PKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSK 169

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+
Sbjct: 170 LTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLF 219


>gi|256821782|ref|YP_003145745.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256795321|gb|ACV25977.1| RNA methyltransferase, TrmH family, group 3 [Kangiella koreensis
           DSM 16069]
          Length = 246

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 22/241 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTID 102
            +YG+H V   L   S ++ +L    N        + +L  D N+     +     Q +D
Sbjct: 4   LVYGLHAVEVLLKRSSDRVERLYIQSNRHDQRSHKVVKLAQDKNIE----IIQKERQELD 59

Query: 103 KIVGKEAVHQGLALETAPL---------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           ++  +   HQG+     P          +   L  +  +  +++LD V DPHN+GA LRS
Sbjct: 60  EMTDQR--HQGVIAVCRPEKKKSFHEKHIPELLSQIDEAPFILILDGVTDPHNLGACLRS 117

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     +I  K  + S + V+ K A GA E +P+I ++NL  A++++   G    G +
Sbjct: 118 ADAAGVHMVIAPKDNAASITDVVRKVACGAAETVPFIPVTNLVRAMKQLQEAGVWIAGTA 177

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++++ + Q      +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  V L
Sbjct: 178 GEAEQDIYQANLKGPLAIVMGAEGEGMRRLTRENCDYLIKIPMAGEVSSLNVSVATGVTL 237

Query: 274 Y 274
           +
Sbjct: 238 F 238


>gi|310829598|ref|YP_003961955.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308741332|gb|ADO38992.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 283

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 141/278 (50%), Gaps = 23/278 (8%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQ---KSRHTSQPEN-----LFLYGVHTVSAALNNPSR 66
           +K +   K R +H   +K +S+++   K R T + ++       + G + V  AL +  +
Sbjct: 1   MKKNDRKKTRNDHGREQKKESYHRADLKRRETRRQDDEGDDRFVIVGKNPVMEALRS-EQ 59

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI----VGKEAVHQGLALETAPLL 122
           ++ +LL  K+    +  D  L      + +  Q+++KI    +     HQG+A   AP  
Sbjct: 60  QMDKLLILKDNKDHVLGD--LAEKARRRGIVVQSVEKIKLEGLADGQPHQGVAAMMAPFP 117

Query: 123 SPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
             ++       DA     L+++LDH+ DPHN+GAI+RSA      G+I  KR S S +AV
Sbjct: 118 YSSMEDVLAKADAKGEEPLVVILDHLTDPHNLGAIIRSANLCGVHGVIIPKRRSASLTAV 177

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             K++SGA+ H P +++ NLT  + ++ + GF  +    D     + + K  K+A+I+G 
Sbjct: 178 SVKASSGAVAHTPIVKVGNLTQCIDELKAKGFWIMAADMDGAPYYKNDFKG-KLAIIIGN 236

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           EGKG+ P  ++       + + G I + N S AAA+ L
Sbjct: 237 EGKGISPNVKKQCDYSVSIPLYGDIDSFNASAAAAIIL 274


>gi|293375373|ref|ZP_06621654.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
           PC909]
 gi|325844481|ref|ZP_08168208.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
 gi|292645926|gb|EFF63955.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
           PC909]
 gi|325489155|gb|EGC91539.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
          Length = 276

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 128/254 (50%), Gaps = 16/254 (6%)

Query: 40  SRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLL-ATKNALARLDWDANLPHP-FPVKT 95
           SR  ++ E+ +  +YG +TV+  L +  RK+F+++ A   A A     A +     P K 
Sbjct: 18  SRRENKKESKYEVIYGKNTVNEVLES-KRKVFEVIVADTVAKAERGLMATIEKKQIPCKV 76

Query: 96  VPPQTIDKIVGKE----AVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDP 144
           +P Q  +++   +      HQG LAL       P  D +  +        +++LD + DP
Sbjct: 77  LPRQKFEQLAKDKYDARGNHQGVLALVEPYAYMPLPDLIAKATQKEEPAFIIILDGLEDP 136

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAILR+A A   DGI+  K  S   ++ +AK ++GA+EHIP   ++NLT A+ ++  
Sbjct: 137 HNLGAILRTADAAGVDGIVIRKDRSVGLTSTVAKLSTGAIEHIPVACVANLTVAINQLKE 196

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G  +   +          + L++G+EGKG+    +E      +L M G + +LN
Sbjct: 197 AGLWIAGTDASEAQDYRTLDATLPLGLVIGSEGKGMSRLVREACDFKVYLPMRGHVTSLN 256

Query: 265 VSNAAAVALYITQN 278
            S AAA+ +Y   N
Sbjct: 257 ASVAAALLMYEIYN 270


>gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina
           MBIC11017]
          Length = 309

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 127/257 (49%), Gaps = 19/257 (7%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           +++S +++   + + +   +YG H+V +AL +  R + ++      ++RL +D       
Sbjct: 43  RIRSKDKEPAQSEEEQGDLIYGRHSVLSALEH-QRSLNRVWV----VSRLRYDPRFHSLL 97

Query: 92  PVKTVPPQTIDKI-------VGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMV 137
                    ID++       + ++A HQG+A + A         L    +A     +++ 
Sbjct: 98  NQAKSQGTIIDEVDHRRLNQLTQQATHQGIAAQVAAYEYLDISTLIEQANAATPKPVIIA 157

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            D + DPHN+GA++R+A A    G+I  +R +   ++V+AK A+GALE +   R+ NL  
Sbjct: 158 ADSITDPHNLGAMIRTAEALGAQGVIIPQRRAAGITSVVAKVATGALETLAIARVVNLNQ 217

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L+++   GF   GLS+ + + +      +   L++GAEG GL   TQ     M  + + 
Sbjct: 218 GLEQLKKAGFWIYGLSTSAPQSIHTVTFTEPTVLVIGAEGPGLSVSTQHHCDQMVSIPLQ 277

Query: 258 GIIKALNVSNAAAVALY 274
           G   +LN S A  +ALY
Sbjct: 278 GKTASLNASVATGMALY 294


>gi|300715048|ref|YP_003739851.1| 23S rRNA (guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
           Eb661]
 gi|299060884|emb|CAX57991.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
           Eb661]
          Length = 245

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID-KIVGKE 108
            ++G+H V A L++  ++  ++   K        D     P  VK +  Q I  +I  ++
Sbjct: 4   IVFGIHAVKALLDSSPQRFQEVFILKGR------DDKRLQPL-VKELEAQGIVVQIANRQ 56

Query: 109 --------AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
                    VHQG+     P         P L    +S  L++LD + DPHN+GA LRSA
Sbjct: 57  WLDSQVEGGVHQGIVARVKPGRQYQESDLPDLLESLDSPFLLILDGITDPHNLGACLRSA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  S   +A   K ASGA EH+P I ++NL   ++ +       +G + 
Sbjct: 117 DAAGVHAVIVPRDRSAQLNATAKKVASGAAEHVPLITVTNLARTMRVLQDANVWIVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 177 EADHNLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMSGSVSSLNVSVATGVCLF 236


>gi|15673854|ref|NP_268029.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724905|gb|AAK05970.1|AE006417_2 tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407365|gb|ADZ64436.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 242

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 119/239 (49%), Gaps = 23/239 (9%)

Query: 50  FLYGVHTVSAALNNP-SRKIF--QLLATKNA-----LARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V+ ALN     K++  + L  KN      LARL           +   P   +
Sbjct: 6   LIYGLHAVTEALNGDLVNKLYVQEDLRGKNVEKIKELARL-------KKVNISWTPKTEL 58

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           +K+  +  VHQG     +      L+ +      ++   +++LD + DPHN+G+I R+A 
Sbjct: 59  NKLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D II  K  +   ++   K+++GAL+H+P +R++NL+  L K+ +  F   G   D
Sbjct: 118 ATGVDAIIIPKHRAVGITSTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMD 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +   K  K+ALI+G EG G+    ++    M  + M G +++LN S AA++ +Y
Sbjct: 178 GTVYSKWNTKG-KVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMY 235


>gi|317493577|ref|ZP_07951998.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918520|gb|EFV39858.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 17/238 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKIVG 106
            +YG+H V A L    ++  ++   K    R  +   A L      ++    Q +D+ V 
Sbjct: 4   MIYGIHAVQALLERDPQRFLEVFVMKGREDRRLMPLIAELEQMGIVIQVANRQWLDEKV- 62

Query: 107 KEAVHQGLALETA----------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + AVHQG+               P L   LD       L++LD V DPHN+GA LRSA A
Sbjct: 63  EGAVHQGIIARVREGRQYQENDLPALLENLD---KPPFLLILDGVTDPHNLGACLRSADA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  +  S   +A   K A GA E +P IR++NL   ++ +       +G + ++
Sbjct: 120 AGVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRFLQEQNIWIVGTAGEA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 180 DHNLYQSKMTGPMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 237


>gi|82703073|ref|YP_412639.1| RNA methyltransferase TrmH, group 3 [Nitrosospira multiformis ATCC
           25196]
 gi|82411138|gb|ABB75247.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 249

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 11/236 (4%)

Query: 50  FLYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI-V 105
           F++G H +++ L   +   R++F     ++  AR D  A L     ++ +       + +
Sbjct: 6   FIFGFHAITSRLRQNAASVREVFLDAERRDQRAR-DL-AALAEAQDIRLIACDNARLMAL 63

Query: 106 GKEAVHQGLA--LETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              A HQG+   +++A     +   LD +    LL+VLD + DPHN+GA LR A AF   
Sbjct: 64  AGNARHQGVVARIDSARAYVDIDDVLDTLAEPALLLVLDGIQDPHNLGACLRVADAFGVH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   +A + K ASGA +++PYI ++NL   L+ +   G   +G ++D+   L
Sbjct: 124 AVIAPKDRAVGLTAAVHKVASGAADNVPYISVTNLARTLRGLKQRGVTVLGTAADADTQL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                   IA +LG+E KG+R  T+E    +  + M G +++LNVS +A + L+ T
Sbjct: 184 GVLQLAGPIAWVLGSEEKGMRRLTRENCDQLVSIPMLGSVESLNVSVSAGICLFET 239


>gi|294634465|ref|ZP_06713000.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
           ATCC 23685]
 gi|291091979|gb|EFE24540.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
           ATCC 23685]
          Length = 228

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPH 145
           V+    Q +D+ V + AVHQG+     P        L   L ++ +   L++LD V DPH
Sbjct: 31  VQVAQRQWLDEKV-EGAVHQGIVARVKPGRQYQENDLPDLLASLDHPPFLLILDGVTDPH 89

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA LRSA A   D +I  +  S   +A   K A GA E +P IR++NL   ++ +   
Sbjct: 90  NLGACLRSADAAGIDAVIVPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEE 149

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               IG + ++   L Q      +AL++GAEG G+R  T+E    +  + M G + +LNV
Sbjct: 150 NIWIIGTAGEADHSLYQSKMAGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNV 209

Query: 266 SNAAAVALY 274
           S A  + L+
Sbjct: 210 SVATGICLF 218


>gi|169797417|ref|YP_001715210.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213155769|ref|YP_002317814.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB0057]
 gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB056]
 gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB058]
 gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB059]
 gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB0057]
          Length = 249

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 24/247 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH+V + L     ++  L   K     RL     L  PF   V+     +
Sbjct: 2   AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDS 59

Query: 101 IDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           ++K+ G    HQG+     P           LL+ T DA     LL+ LD V DPHN+GA
Sbjct: 60  LEKLAGL-PFHQGVVAAVRPHPTLNEKDLDQLLTETPDA-----LLLALDQVTDPHNLGA 113

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQ 208
            +R+A A     +I  +  S S +    K A+G  E + +I+++NL   L  +  +   +
Sbjct: 114 CIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVR 173

Query: 209 TIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            IG   D    P+++   +  + +++GAE  GLRP TQ      A++ M G +++LNVS 
Sbjct: 174 VIGTMLDENALPIQKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSV 233

Query: 268 AAAVALY 274
           A  +ALY
Sbjct: 234 ATGMALY 240


>gi|117919150|ref|YP_868342.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. ANA-3]
 gi|117611482|gb|ABK46936.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. ANA-3]
          Length = 246

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++G+H V A L +   +I +L L       RL         F   ++    + +D    
Sbjct: 6   IIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLDD-KA 64

Query: 107 KEAVHQGLA--LETAPLLSP-TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + A HQG+   ++ A +L    LD +        L++LD V DPHN+GA LR+A A    
Sbjct: 65  ESAQHQGIVARVKAAKILGEHDLDELLGKTDLPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++   L
Sbjct: 125 GIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEADCEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+
Sbjct: 185 YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLF 238


>gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
 gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
          Length = 285

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 102/186 (54%), Gaps = 9/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIG 148
           VP   +D++V     HQG+ +  +     T+D      A +N     ++LD V DPHN+G
Sbjct: 93  VPKSKLDQLV-DGMNHQGVVVAASAFQYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLG 151

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I+R+A A    GII  KR +   +A +AK+++GA+EH+P  R++NL  A++++   G  
Sbjct: 152 SIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGAIEHVPVARVTNLVQAIKELKERGLW 211

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G   + +   + E     I L++G EGKG+    +E    M  + M G +++LN S A
Sbjct: 212 LYGTDMEGQDYRQWET-TLPIGLVMGNEGKGISRLVKEQMDGMVTIPMTGHVQSLNASVA 270

Query: 269 AAVALY 274
           A++ +Y
Sbjct: 271 ASLLMY 276


>gi|257093550|ref|YP_003167191.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046074|gb|ACV35262.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 250

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 5/171 (2%)

Query: 109 AVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A HQG+     A +    L   LD +     L+VLD + DPHN+GA LR A A     +I
Sbjct: 68  ARHQGVIATVGATQRHVTLDDVLDTLDEPPFLLVLDGIQDPHNLGACLRVADAVGAHAVI 127

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +    K ASGA E +PYI ++NL  AL++M       IG  + +K  L   
Sbjct: 128 APKDRAVGLTQTAVKVASGAAETVPYITVTNLARALREMKERDIWVIGTDALAKDDLYAA 187

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   A +LGAEG GLR  T+ET   +  + M G + +LNVS A  V LY
Sbjct: 188 QWSTATAWVLGAEGDGLRRLTRETCDQLVSIPMLGSVASLNVSVATGVCLY 238


>gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158139723|gb|ABW18035.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           oremlandii OhILAs]
          Length = 250

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 107/192 (55%), Gaps = 10/192 (5%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVND 143
            P++ V  Q ++++   + VHQG+    A        D + N++       L++LD + D
Sbjct: 48  IPIQYVERQKLNEMSSSD-VHQGIIATVAAYEYCEVEDILENAKSKGRDPFLLILDEIMD 106

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+G+++R+A A   DGII  KR S   ++ +AKS++GA+E++P  ++SN+   + K+ 
Sbjct: 107 PHNLGSMMRTADAVGVDGIIIPKRRSVGLTSTVAKSSAGAIEYVPVAKVSNIAQTIDKIK 166

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G    G   S SK+    ++K   +AL++G EG+G+    +E    +  L M G + +
Sbjct: 167 DMGIWVAGADMSGSKEHYNMDLKG-PLALVIGNEGEGISRLIKEKCDFLIKLPMVGQVSS 225

Query: 263 LNVSNAAAVALY 274
           LN S AAAV +Y
Sbjct: 226 LNASVAAAVLMY 237


>gi|262045387|ref|ZP_06018411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037305|gb|EEW38552.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 243

 Score =  102 bits (254), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 110/236 (46%), Gaps = 14/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKE 108
            +YG+H V A L     +  ++   K    R D     L H    + V  Q  ++    E
Sbjct: 4   MIYGIHAVQALLERAPERFQEVYILKG---REDKRLLPLIHALEAQGVVIQLANRQFLDE 60

Query: 109 ----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                VHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 61  KSEGVVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 236


>gi|311112939|ref|YP_003984161.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944433|gb|ADP40727.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 328

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAV--------RNSQLLMV 137
            P+  +P   +D++    AVHQG+A++  P   P      LD +        ++  L + 
Sbjct: 122 LPMLEIPRSELDRLT-DGAVHQGIAMQIPPYQYPDATDLVLDVMERWHAGKLKSPPLFVA 180

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+GAI+RS  AFS DG+I  +R S + +A   K+++GA   IP    +NLT 
Sbjct: 181 LDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNLTR 240

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            LQ+    G   IGL       L   ++ ++ + +++G+EGKGL     ET   +  + +
Sbjct: 241 VLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLCVVVGSEGKGLSRLVTETCDQIVSIPI 300

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
              +++LN + A  + LY    H A+
Sbjct: 301 DSAMESLNAAMAVGITLYDVSRHRAE 326


>gi|269124973|ref|YP_003298343.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
           curvata DSM 43183]
 gi|268309931|gb|ACY96305.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
           curvata DSM 43183]
          Length = 306

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 4/170 (2%)

Query: 109 AVHQGLALETAPL--LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           AVHQG+AL+  P     P     R +  L++  D + DP N+GAI+RSA AF  +G++  
Sbjct: 129 AVHQGIALQVRPYRYADPEELLQRGTPPLIVACDGITDPRNLGAIVRSAAAFGANGVVIP 188

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEI 224
           +R S   +A   KS++G L ++P  + +NLT  L+     G    GL S     + + EI
Sbjct: 189 ERRSAGVTAGTWKSSAGTLANLPVAQTTNLTRQLKAYQQAGCFVAGLDSRGAITVADLEI 248

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  + L++G+EGKGL     ET   +A + MPG  ++LN   AA +ALY
Sbjct: 249 ADGPLVLVVGSEGKGLSRLVAETCDMLATIPMPGRAESLNAGVAAGIALY 298


>gi|227325971|ref|ZP_03829995.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 243

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+      H   ++    Q +
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELE-----AHGIVIQVANRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           DK   ++AVHQG+  +           L   LD +  +  L++LD V DPHN+GA LR+A
Sbjct: 59  DK-QAEDAVHQGIVAKVKEGRKYQENDLPAMLDNL-ETPFLLILDGVTDPHNLGACLRNA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + 
Sbjct: 117 DGAGVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 177 EADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|317132980|ref|YP_004092294.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
           harbinense YUAN-3]
 gi|315470959|gb|ADU27563.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
           harbinense YUAN-3]
          Length = 258

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 23/220 (10%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP- 120
             P R+I +L   +  +              +K V    +D I G  + HQG+A   A  
Sbjct: 41  GGPVRRIVELCRERGVV--------------IKDVSSVKLDAICGGMS-HQGVAAMAAAH 85

Query: 121 ---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
               +S  L A +       L++ D +NDPHN+GAI+R+A      G+I  KR +   +A
Sbjct: 86  EYVGVSDMLHAAKERGEPPFLVICDEINDPHNLGAIIRTAECCGAHGVIIPKRGAVGLTA 145

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + K+ASGALE++P  R+SNL   ++++   G    G   D +   E +      A+I+G
Sbjct: 146 AVDKAASGALEYMPVARVSNLAATVEELKKEGVWVYGTDMDGQPFYETDFSGGA-AVIIG 204

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +EGKG+    +E    +  + M G I +LN S AA + LY
Sbjct: 205 SEGKGISRLLREKCDVVVSIPMRGRITSLNASVAAGIVLY 244


>gi|317126031|ref|YP_004100143.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
 gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
          Length = 320

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 13/193 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142
            P+   P   +D++    AVHQGLAL+  P        L+ P    V    L++ LD + 
Sbjct: 124 LPILEAPRGELDRLT-DGAVHQGLALQVPPYEYADPRDLVDPEQPGV---PLIVALDGIT 179

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RS  AF   G++  +R S   +A   K+++GA   IP  +  NLT AL+  
Sbjct: 180 DPRNLGAIVRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARIPVAKAGNLTRALEDF 239

Query: 203 HSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              GF  +GL  D    L +  +  + + ++ G+EGKGL    +ET   +  + M   ++
Sbjct: 240 KRAGFFVLGLDMDGDVQLPDLTLAAEPLVVVTGSEGKGLSRLVRETCDQIVSIPMSSAVE 299

Query: 262 ALNVSNAAAVALY 274
           +LN   A  VALY
Sbjct: 300 SLNAGLATGVALY 312


>gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 310

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 11/186 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           VP   +D++     +HQG+AL+  P        LL+  +D      LL+ LD+++DP N+
Sbjct: 119 VPRADLDRMTANH-LHQGIALQVPPYHYAHPDDLLAAAMDT--PPALLVALDNISDPRNL 175

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R +NLT  L+     G 
Sbjct: 176 GAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKDWADRGL 235

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + IGL +  +  ++    +D + +++G+EGKGL    ++    +  + M G  ++LN S 
Sbjct: 236 RVIGLDAAGETAVDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIPMAGRAESLNASV 295

Query: 268 AAAVAL 273
           AA V L
Sbjct: 296 AAGVVL 301


>gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 264

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 11/231 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +G H V A L++    + QL  +    +   R   +    H  PV T  P  ++  + +E
Sbjct: 28  WGFHAVYALLSHRPATVAQLFISPRRDDQRIRELLELAARHGIPVHTEIPADLN--LEEE 85

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+         PTL+ +      + +QLL+ LD + DP N+GAI+R+A AF  DG+
Sbjct: 86  ISHQGVVARVKATGQPTLEGLLASLQPKENQLLLALDSIQDPRNLGAIIRTAAAFGADGL 145

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S   +  + K+A+G L  +   R++NL+ +L ++   GF   G    + + L Q
Sbjct: 146 LIPKDRSAPLTGTVMKAAAGTLPLLTICRVTNLSQSLAQLKKHGFWIYGAGGQAPQQLHQ 205

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  I L++G E KGLRP        +  + M   +++LNV+ A  V L
Sbjct: 206 TSFSGPICLVMGNEQKGLRPLVSRHCDHLVAIPMAAGVESLNVAVATGVIL 256


>gi|169634562|ref|YP_001708298.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|215484855|ref|YP_002327094.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
 gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013150]
 gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013113]
 gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6014059]
 gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2]
 gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013150]
 gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013113]
 gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6014059]
          Length = 249

 Score =  102 bits (254), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 24/247 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH+V + L     ++  L   K     RL     L  PF   V+     +
Sbjct: 2   AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDS 59

Query: 101 IDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           ++K+ G    HQG+     P           LL+ T DA     LL+ LD V DPHN+GA
Sbjct: 60  LEKLAGL-PFHQGVVAAVRPHPTLNEKDLDQLLAETPDA-----LLLALDQVTDPHNLGA 113

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQ 208
            +R+A A     +I  +  S S +    K A+G  E + +I+++NL   L  +  +   +
Sbjct: 114 CIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVR 173

Query: 209 TIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            IG   D    P+++   +  + +++GAE  GLRP TQ      A++ M G +++LNVS 
Sbjct: 174 VIGTMLDENALPIQKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSV 233

Query: 268 AAAVALY 274
           A  +ALY
Sbjct: 234 ATGMALY 240


>gi|300744322|ref|ZP_07073341.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
           M567]
 gi|300380047|gb|EFJ76611.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
           M567]
          Length = 328

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 15/206 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAV--------RNSQLLMV 137
            P+  +P   +D++    AVHQG+A++  P   P      LD +        ++  L + 
Sbjct: 122 LPMLEIPRSELDRLT-DGAVHQGIAMQIPPYQYPDATDLVLDVMERWHAGKLKSPPLFVA 180

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+GAI+RS  AFS DG+I  +R S + +A   K+++GA   IP    +NLT 
Sbjct: 181 LDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNLTR 240

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            LQ+    G   IGL       L   ++ ++ + +++G+EGKGL     ET   +  + +
Sbjct: 241 VLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLCVVVGSEGKGLSRLVTETCDQIVSIPI 300

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
              +++LN + A  + LY    H A+
Sbjct: 301 DSAMESLNAAMAVGITLYDVSRHRAE 326


>gi|125624835|ref|YP_001033318.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493643|emb|CAL98630.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071633|gb|ADJ61033.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 242

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 25/240 (10%)

Query: 50  FLYGVHTVSAALNNP-SRKIF--QLLATKNA-----LARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V+ ALN     K++  + L  KN      LAR+           +   P   +
Sbjct: 6   LIYGLHAVTEALNGDLVNKLYVQEDLRGKNVEKIKELARI-------KKVNISWTPKTEL 58

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           +K+  +  VHQG     +         L P L A +    +++LD + DPHN+G+I R+A
Sbjct: 59  NKLT-ENGVHQGFMARVSEFAYADLATLLPEL-AEKAEATILILDELTDPHNLGSIARTA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D II  K  +   +    K+++GAL+H+P +R++NL+  L K+ S GF   G   
Sbjct: 117 DATGVDAIIIPKHRAVGITPTAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDM 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D     +   K  KIALI+G EG G+    ++    M  + M G +++LN S AA++ +Y
Sbjct: 177 DGTVYNKWNTKG-KIALIIGNEGHGIGQNLKKQVDEMITIPMVGHVQSLNASVAASILMY 235


>gi|315227398|ref|ZP_07869185.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
 gi|315119848|gb|EFT82981.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 329

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 178 LFIALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSASVTASAWKVSAGAAAHLPVARVV 237

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A++ +   G+ +I L       + E   ++D + ++LG+EGKG+    +E   S+ 
Sbjct: 238 NLTKAIESLKERGYYSIDLDGGGTATVGESGFESDPLIVVLGSEGKGISRLVREQCDSIV 297

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M  ++++LN S AA +AL+
Sbjct: 298 SIPMTSLVESLNASVAAGIALF 319


>gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 247

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V T    T+ K+ G +  HQG+   +A      +D +       +    L++LD + DPH
Sbjct: 50  VSTTDNDTLSKLAGSQN-HQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RSA AF   GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   
Sbjct: 109 NLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKER 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +G   +++K  E+   +  +A ++G EGKG+     +    +  + M G I +LN 
Sbjct: 169 GLWIVGTDVNAEKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNA 228

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 229 SVAASILIY 237


>gi|282858069|ref|ZP_06267264.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
           piscolens W5455]
 gi|282583991|gb|EFB89364.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
           piscolens W5455]
          Length = 269

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 115/220 (52%), Gaps = 15/220 (6%)

Query: 65  SRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            RK+F L       ++ +ARL  D  +P  F    V  + ++++ G  AVHQG+A   AP
Sbjct: 41  CRKVFLLAGAQDEFRDTVARLCADGRIPLDF----VEREELERLSGG-AVHQGVAARVAP 95

Query: 121 LLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           +    LD V ++       L+++LDH  DPHN+GA++R+A       ++     S + + 
Sbjct: 96  IPPADLDGVVDALDPQAPALIVLLDHCQDPHNLGAVIRTAEVAGAACVVCQNDRSATVNG 155

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + K+++GA   +P  ++ N+  A++++   GF  +GL   + + +      +++AL++G
Sbjct: 156 TVVKTSAGAAFRLPVAQVVNVGRAVERLKRKGFWVVGLDHRTDETVWSSALPERLALVVG 215

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +EG+G+   T +    +    M G    LN S AAA+ ++
Sbjct: 216 SEGEGISALTAKKCDMLVKFPMAGRTGNLNASVAAALGMF 255


>gi|149377618|ref|ZP_01895356.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
 gi|149358091|gb|EDM46575.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
          Length = 245

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 12/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVG 106
           +++G H V A L     ++ Q+ + T     R+    +      V+   V  + +D+ V 
Sbjct: 5   YIFGWHAVEAVLKREPERLQQVWIQTGREDRRVKTVTDTLSELGVRWQVVHRKELDQRVA 64

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              VHQG+    +         L   L        L++LD V DPHN+GA LR+A A   
Sbjct: 65  --GVHQGVVAAVSESREWSEDDLLAMLSGSEKPPFLLILDGVTDPHNLGACLRTADAVGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++  K  S S S  + K A GA E +P +R++NL   ++ +   G   IG + ++   
Sbjct: 123 QAVVVPKDKSASLSPTVRKVACGAAETVPLVRVTNLARFMRTIRDDGVWLIGTAGEADST 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L Q      +AL++GAEGKG+R  T+E    + ++ M G + +LNVS A  V LY
Sbjct: 183 LHQADFTGPVALVMGAEGKGMRRLTREHCDLLINIPMLGHVDSLNVSVATGVCLY 237


>gi|90581367|ref|ZP_01237163.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
 gi|90437477|gb|EAS62672.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
          Length = 244

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 18/240 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------PFPVKTVPPQT 100
           N  ++G+H V A L +   +  ++   K    R D D  LP           ++    + 
Sbjct: 3   NDMIFGIHAVKAVLASDPVRFIEVFVLK---GRED-DRLLPLVTELQSLGITIQEAGRKA 58

Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D  V K A HQG+     P        LD +   + + LL++LD V DPHN+GA LR+A
Sbjct: 59  LDDKV-KGASHQGIVARVRPGKQYNENDLDDLLVGKENPLLLILDGVTDPHNLGACLRNA 117

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  S   +A  +K A GA E +P +R++NL   ++ +   G   +G + 
Sbjct: 118 DAAGAVAVIVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAG 177

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q      +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+
Sbjct: 178 EATHDIYQSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLF 237


>gi|289209098|ref|YP_003461164.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           K90mix]
 gi|288944729|gb|ADC72428.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           K90mix]
          Length = 251

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 93/171 (54%), Gaps = 9/171 (5%)

Query: 111 HQGLALETAPLLSPTLDA------VRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ +  AP   P ++       VRN   L++VLD V DPHN+GA LR+A A     I+
Sbjct: 75  HQGVIVHCAP--RPVVEEKALVQRVRNGLDLVLVLDGVTDPHNLGACLRTADAAGAGAIV 132

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
           T + +S + +    K ASGA E +P + + NL   L  +   G  T+GL   + + L   
Sbjct: 133 TPRHHSAALTPAAIKVASGAAETVPVVAVGNLARTLAALKDAGMWTVGLDGAAHEDLYAV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 A+++GAEG+G+R  T+E    +A + M G +++LNVS A  + L+
Sbjct: 193 DLRPPTAIVMGAEGEGMRRLTREACDHLARIPMGGTVESLNVSVATGITLF 243


>gi|152999247|ref|YP_001364928.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS185]
 gi|160873860|ref|YP_001553176.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS195]
 gi|304411189|ref|ZP_07392804.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS183]
 gi|307306484|ref|ZP_07586227.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           BA175]
 gi|151363865|gb|ABS06865.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS185]
 gi|160859382|gb|ABX47916.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS195]
 gi|304350382|gb|EFM14785.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS183]
 gi|306910775|gb|EFN41203.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           BA175]
 gi|315266087|gb|ADT92940.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS678]
          Length = 246

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++G+H V A L +   +I +L L       RL   AN    F   ++    + +D    
Sbjct: 6   IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALDD-KA 64

Query: 107 KEAVHQGLA--LETAPLLSPT-LDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + + HQG+   ++ A +L+   LD +  N++   L++LD V DPHN+GA LR+A A    
Sbjct: 65  ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++   L
Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  + L+
Sbjct: 185 YQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLF 238


>gi|24375422|ref|NP_719465.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella oneidensis
           MR-1]
 gi|52783315|sp|Q8EAG8|RLMB_SHEON RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|24350263|gb|AAN56909.1|AE015825_8 RNA methyltransferase, TrmH family, group 3 [Shewanella oneidensis
           MR-1]
          Length = 246

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++G+H V A L +   +I +L L       RL         F   ++    + +D+   
Sbjct: 6   IIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLDE-KA 64

Query: 107 KEAVHQGLA--LETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +   HQG+   ++ A +L+      L A  +   L++LD V DPHN+GA LR+A A    
Sbjct: 65  ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++   L
Sbjct: 125 GIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEADCEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+
Sbjct: 185 YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLF 238


>gi|126175841|ref|YP_001051990.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS155]
 gi|125999046|gb|ABN63121.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS155]
          Length = 246

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++G+H V A L +   +I +L L       RL   AN    F   ++    + +D    
Sbjct: 6   IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALDD-KA 64

Query: 107 KEAVHQGLA--LETAPLLSP-TLDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + + HQG+   ++ A +L+   LD +  N++   L++LD V DPHN+GA LR+A A    
Sbjct: 65  ESSQHQGIVARVKAAKVLNERDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++   L
Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  + L+
Sbjct: 185 YQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLF 238


>gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
 gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
          Length = 318

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 133/273 (48%), Gaps = 28/273 (10%)

Query: 21  AKLRRNHRDYKKMQSFNQKS----RHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLAT 74
           A+ R  H+ Y+   + N++     +   +PE   + G + V  AL  + P   ++  L  
Sbjct: 41  AEDRPGHKAYRAANAANKRDQARQKKADRPE--LIAGRNPVVEALRADVPGTALYVALNI 98

Query: 75  K-----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------L 121
                 N   RL  D  +     +  +P + +D+   + A+HQGL L+  P        L
Sbjct: 99  DIDDRVNEAVRLAGDKGIS----ILEIPREELDRKTNR-AMHQGLGLQVPPFEYAHPDDL 153

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +    D+  N+ L + LD V DP N+GA++RSA AF   G++  +R S   +AV  ++++
Sbjct: 154 MQAARDS-GNTPLFVALDGVTDPRNLGAVIRSAAAFGAQGVLLPERRSAGMTAVAWRTSA 212

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGL 240
           G    +P    +NLT  L+   S G   +GL +D    ++  E+  D + ++LG+EG+GL
Sbjct: 213 GTAAKLPIAVATNLTRQLRAWASKGLMIVGLDADGTVDIDALELAADPLVVVLGSEGRGL 272

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               +ET  +   + M   +++LN S AA V L
Sbjct: 273 SRLVRETCDATVSIPMAAGVESLNASVAAGVLL 305


>gi|261822838|ref|YP_003260944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           wasabiae WPP163]
 gi|261606851|gb|ACX89337.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           wasabiae WPP163]
          Length = 243

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELE-----AQGIVIQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           DK   ++AVHQG+ ++           L   LD +  +  L++LD V DPHN+GA LR+A
Sbjct: 59  DK-QAEDAVHQGIVVKVKEGRKYQENDLPAMLDNI-ETPFLLILDGVTDPHNLGACLRNA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + 
Sbjct: 117 DGAGVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 177 EADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 247

 Score =  102 bits (253), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 85/141 (60%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN+GAI+RSA AF   G+I  KR S   +A + K+++GA+E+I   ++S
Sbjct: 97  FLLILDEITDPHNMGAIIRSAEAFGVHGVIIPKRRSAGINATVVKASAGAVEYIKVAKVS 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++ +   G   IG  + ++K  E+   +  +AL++G+EGKG+     E    +  
Sbjct: 157 NINSTIRDLKEKGLWIIGTDAKAEKSFEELDYDFPLALVIGSEGKGISRLVLENCDFVIK 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA++ +Y
Sbjct: 217 IPMKGKINSLNASVAASILMY 237


>gi|114046193|ref|YP_736743.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7]
 gi|113887635|gb|ABI41686.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-7]
          Length = 246

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++G+H V A L +   +I +L L       RL         F   ++    + +D    
Sbjct: 6   IIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLDD-KA 64

Query: 107 KEAVHQGLA--LETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + + HQG+   ++ A +L+      L A  +   L++LD V DPHN+GA LR+A A    
Sbjct: 65  ESSQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++   L
Sbjct: 125 GIIVPKDNSVGVTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEADCEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+
Sbjct: 185 YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLF 238


>gi|114564515|ref|YP_752029.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335808|gb|ABI73190.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           frigidimarina NCIMB 400]
          Length = 246

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 10/233 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107
           ++G+H V A L+N   ++ +L L       RL    NL   F   ++    + +D   G 
Sbjct: 7   IFGIHAVQALLDNSPERVIELWLLQGRDDERLTPLINLASTFGTTLQRAARKVLDDKAGS 66

Query: 108 EAVHQGLALETA---PLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              HQG+        PL    LD + +      L++LD V DPHN+GA LR+A A     
Sbjct: 67  SQ-HQGIVARVKAVKPLTEKDLDELLDKTAVPFLLILDGVTDPHNLGACLRNADAAGVHA 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   ++ ++K A GA E IP  +++NL   ++ +   G   +G + +++  + 
Sbjct: 126 VIVPKDNSVGLTSTVSKVACGAAETIPLFQVTNLARTMRHLQDKGVWIVGTAGEAEGNVY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q      +A+ +GAE KGLR  ++E   S+  + M G + +LNVS A  V L+
Sbjct: 186 QADLKGPLAIAMGAEDKGLRRLSREGCDSLVSIPMSGSVSSLNVSVATGVCLF 238


>gi|262277080|ref|ZP_06054873.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
 gi|262224183|gb|EEY74642.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
          Length = 242

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 13/232 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFP--VKTVPPQTIDKIV 105
            +L G HTV+ AL N +  IF++ L++KN +  +      P  +   +     Q IDK+ 
Sbjct: 10  FWLGGKHTVNHALKNENNAIFKVFLSSKNNINEI------PKKYLNLISIKSHQEIDKLF 63

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +  HQG A++     +     +R + +    +++L++V D  NIG+I+RS VAF    
Sbjct: 64  STKINHQGYAVKIKERKTFQFSELRKNIIKYDEIIILNNVFDDRNIGSIIRSCVAFDVKC 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K    + S ++ KSASG +E+I    +SNL + ++ +    +    L  +S K + 
Sbjct: 124 LIVEKNNFRAGSELMNKSASGGMEYIDIYLVSNLNNVIKVLQQNAYWVYSLDGESNKNIF 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               N K A I G+EG G++   ++ +  +  + +   I++LN+SN+ ++ L
Sbjct: 184 DIKFNKKSAFIFGSEGDGIKSLVKKNSDEIISIPINKKIESLNLSNSVSIVL 235


>gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
 gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
          Length = 300

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 119/250 (47%), Gaps = 29/250 (11%)

Query: 50  FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTIDK 103
           F+ G H V  AL+   P  +IF  LA  N   RL  D    A   H   ++TVP   +DK
Sbjct: 4   FIEGKHPVWEALSTHVPITRIF--LADGNKHDRLLQDILHMAARQH-IVMETVPRAQLDK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------------AVRNSQ------LLMVLDHVNDP 144
              K   HQG+  +  P    +LD             AV +S       L++VLDH+ D 
Sbjct: 61  -RSKRGSHQGIMAQAQPFAYASLDDIIARGNDQAVSLAVSHSSSAAPCALIIVLDHITDA 119

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAI RSA +    GII   + S   +A   KS++GA+ HIP  +++NL  AL ++ +
Sbjct: 120 GNLGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQVANLQQALARLKN 179

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G+   G S  ++  +        + L++G E  GL   TQE       L   G++ +LN
Sbjct: 180 EGYWVAGASEKAEGGIWDANLTGNVCLVMGNENTGLARLTQEACDFFVSLPQRGVVSSLN 239

Query: 265 VSNAAAVALY 274
           V+ +A V +Y
Sbjct: 240 VAQSATVCMY 249


>gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 332

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 10/193 (5%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142
            PV  V    +D++ G + VHQG+AL+  P        LL   +D      LL+ LD V 
Sbjct: 132 IPVLEVTRPELDRMAGFDGVHQGVALKVPPYTYAHPQDLLEQIIDR-GEVPLLVALDGVT 190

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RS  AF   G+I  +R S S ++   K+++GA   IP    +NLT  L++ 
Sbjct: 191 DPRNLGAIIRSTGAFGGQGLILPQRRSASVNSAAWKTSAGAAARIPVALAANLTATLKEF 250

Query: 203 HSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              G   +GL+ D    L   E+ +  + +++G+EGKGL     ET   +  + +    +
Sbjct: 251 KKQGVFVLGLAGDGDVSLPALELADRPVVIVVGSEGKGLSRLVTETCDQVVSIPISTATE 310

Query: 262 ALNVSNAAAVALY 274
           +LN   AA+VALY
Sbjct: 311 SLNAGIAASVALY 323


>gi|19553838|ref|NP_601840.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62391479|ref|YP_226881.1| rRNA methyltransferase TRMH family [Corynebacterium glutamicum ATCC
           13032]
 gi|21325412|dbj|BAC00034.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
 gi|41326820|emb|CAF21302.1| PUTATIVE RRNA METHYLTRANSFERASE TRMH FAMILY [Corynebacterium
           glutamicum ATCC 13032]
          Length = 313

 Score =  101 bits (252), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 8/190 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVND 143
            PV  V    +D++ G   +HQG+ L   P        L     A +   + ++LD++ D
Sbjct: 114 LPVLEVNKLELDRMTGN-GMHQGIGLAIPPYEYADVHDLIANAAASKKPGMFVILDNITD 172

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++RS  AF  +G+I  +R S S +AV  ++++G    +P  + +N+T  +++  
Sbjct: 173 PRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQ 232

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+Q +GL +     L+     D + +++G+EGKG+    +E   ++  +   G +++L
Sbjct: 233 QNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESL 292

Query: 264 NVSNAAAVAL 273
           N S AA V L
Sbjct: 293 NASVAAGVVL 302


>gi|330445012|ref|ZP_08308666.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493130|dbj|GAA03163.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 244

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 26/244 (10%)

Query: 48  NLFLYGVHTVSAAL-NNPSR--KIF--------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  ++G+H V A L ++P+R  ++F        +L+   N L  L           ++  
Sbjct: 3   NEMIFGIHAVKAVLASDPARFIEVFALKGRQDERLMPVINELQMLG--------ITIQEA 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             + +D  V K A HQG+     P           L A + + LL++LD V DPHN+GA 
Sbjct: 55  GRKALDDKV-KGASHQGIVARVRPGKQYNENDLDDLLAGKENPLLLILDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     ++  K  S   +A  +K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGAIAVVVPKDRSAQLNATASKVACGAAEIVPLVRVTNLARTMRALQEKGVWIV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + ++   +        +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A+ 
Sbjct: 174 GTAGEATHDIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASG 233

Query: 271 VALY 274
           + L+
Sbjct: 234 ICLF 237


>gi|116871624|ref|YP_848405.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740502|emb|CAK19622.1| RNA methyltransferase, TrmH family, group 3 [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 251

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q I+K+V     HQG+A + A      LD       A       ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR +   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +
Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTS 228

Query: 263 LNVSNAAAVALY 274
           LN S AA++ LY
Sbjct: 229 LNASVAASLLLY 240


>gi|293604389|ref|ZP_06686796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
           piechaudii ATCC 43553]
 gi|292817266|gb|EFF76340.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
           piechaudii ATCC 43553]
          Length = 245

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 6/189 (3%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           V  VP + +D +  +   HQG+       + A  +   LD +    LL++LD V DPHN+
Sbjct: 52  VHPVPMERLDGL-SRGTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNL 110

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA LR+A A     +I  +  +   +A + + A GA + +PY+ ++NL   ++ +   G 
Sbjct: 111 GACLRTADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRGLKDRGV 170

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G    +   + +      +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS 
Sbjct: 171 WLVGTDDQATDSMHKIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSV 230

Query: 268 AAAVALYIT 276
           A+AV LY T
Sbjct: 231 ASAVCLYET 239


>gi|325128109|gb|EGC51004.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           N1568]
          Length = 250

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 114/235 (48%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V  V    +D I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65

Query: 108 EAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A      +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I+ K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 ISPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|328954219|ref|YP_004371553.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454543|gb|AEB10372.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 257

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 16/238 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVK-TVPPQT-IDKI 104
            +YGVH V  AL      + +++  K    R  W      L   + V+  +  QT I ++
Sbjct: 9   LIYGVHPVLEALRREGNAVEEVIVVKGR--RAPWFEEVKALAQKYGVRFRLADQTWIKRL 66

Query: 105 VGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           VG    HQG+   T        P +   L     + LL+V D + DP N+G +LR+A A 
Sbjct: 67  VGP-VNHQGVIARTHGYRYMAEPEMLQRLQQADRNALLVVADCIQDPMNLGNLLRTAYAV 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++  K  +   ++V+ K+A+GA+ H+P  R++NLT A+      G   IG  + + 
Sbjct: 126 GAQGVLIPKDRAVGVTSVVIKAAAGAMVHLPVCRVTNLTTAITHFKEIGLWVIGAEATAS 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALY 274
           + L        +AL++G EG+GLRP+ ++    +  + M G  + +LN + A AV +Y
Sbjct: 186 QTLYGVDLTGPLALVIGGEGQGLRPRVKQACDLLVAIPMAGEQVGSLNAATAGAVMMY 243


>gi|170783051|ref|YP_001711385.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 357

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 99/194 (51%), Gaps = 12/194 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMV-LDHV 141
            PV  V    +D+I G +AVHQGLAL+  P        LL  T+   R    LMV LD +
Sbjct: 154 IPVLEVMRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTIS--RGQVPLMVALDGI 211

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GAI+RS  AF   G+I  +R S   +A   K+++GA    P    SNLT  L+ 
Sbjct: 212 TDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLKA 271

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   G   +GL       L +    D+ I +++G+EGKGL     ET  ++  + +    
Sbjct: 272 LKQRGVFVVGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTIVSIPIGAST 331

Query: 261 KALNVSNAAAVALY 274
           ++LN   AA+V LY
Sbjct: 332 ESLNAGIAASVTLY 345


>gi|332685573|ref|YP_004455347.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
           plutonius ATCC 35311]
 gi|332369582|dbj|BAK20538.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
           plutonius ATCC 35311]
          Length = 279

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 128/269 (47%), Gaps = 19/269 (7%)

Query: 21  AKLRRNHRDYK-----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLAT 74
           +K+ +N   YK     K +    K    +  E+ F++G H V  A+      K+F  L  
Sbjct: 6   SKISQNKHRYKEKNTAKNEQKKMKKTGITTEEDNFVFGYHAVVEAIQQGRGNKLF--LQE 63

Query: 75  KNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDA 128
            +   ++D    L      PVK VP   ++ +   + VHQG+ L         L+  L+ 
Sbjct: 64  DSKGEKIDKLKQLAQERSLPVKWVPKTKLE-MWSNQGVHQGMVLAITAYEYLSLNELLEQ 122

Query: 129 VR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           V+    +   ++LD + DPHN G+I R+A A   DGII  K  S   + V+ K+++GA+E
Sbjct: 123 VKVKTKTPFFLILDGLEDPHNFGSIFRTADATGVDGIIIPKHRSVGITPVVTKTSTGAVE 182

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +IP  R++NL+  + K+    F   G           +     +ALI+G EGKG+    +
Sbjct: 183 YIPVARVTNLSQIIAKLKEQQFWIFGTDMTGIDYRNWD-ATGALALIIGNEGKGISAGLK 241

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + A  +  + M G +++LN   AA + +Y
Sbjct: 242 KEADELITIPMSGHVQSLNAGVAAGLLMY 270


>gi|319779502|ref|YP_004130415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
           equigenitalis MCE9]
 gi|317109526|gb|ADU92272.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
           equigenitalis MCE9]
          Length = 245

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 6/184 (3%)

Query: 96  VPPQTIDKIVGKEAVHQG-LAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           V  Q +D +  K   HQG LA+    + A  +   LD +    LL++LD V DPHN+GA 
Sbjct: 55  VDSQRLDAL-AKGIKHQGVLAIASMQQLAVSIDDVLDVINEPALLLILDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   ++ + + A GA + +PYI ++NL   L+ +   G   I
Sbjct: 114 LRTADAAGVHAVIAPKDRSVGLNSTVQRVACGAADTVPYIMVTNLARTLRSLKERGIWII 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G +  ++K +         A ++GAEG G+R  T E+   +  + M G +++LNVS A+A
Sbjct: 174 GTTDATEKSVYDIDAKLPTAWVMGAEGDGMRRLTSESCDQLVRIPMLGSVESLNVSVASA 233

Query: 271 VALY 274
           V LY
Sbjct: 234 VCLY 237


>gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 317

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 138/279 (49%), Gaps = 26/279 (9%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64
           K  ++++  K  H AKL R  RD           RH  +   + + G + V   L+   P
Sbjct: 40  KAEDRVYHAK--HKAKLHRQRRD---------SGRHEKETAEMVV-GRNPVIECLHAKVP 87

Query: 65  SRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           +  ++    T++   LA     AN  +  P+  V    +D++ G   +HQG+ L+  P  
Sbjct: 88  ATNLYIAQGTRSDERLAEAVAIANARN-LPILEVQRHVMDQMTGN-GMHQGIGLQIPPYK 145

Query: 123 SPTL-----DAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              +     +A +  +  + ++LD++ DP N+GA++RS  AF  DG+I  +R S S +AV
Sbjct: 146 YADVHDLIAEAAKKQEPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSASVTAV 205

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILG 234
             ++++G    +P  R +N+T  +Q+    G+Q +GL +  +  L+  +   D + +++G
Sbjct: 206 AWRTSAGTAARLPVARETNMTRTVQEFQKNGYQVVGLDAGGEHTLDTYKGGKDPVVIVIG 265

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +EGKG+    +E    +  + M   +++LN S AA   L
Sbjct: 266 SEGKGISRLVRENCDVIMSIPMTSWVESLNASVAAGAVL 304


>gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 255

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 106/187 (56%), Gaps = 8/187 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNI 147
           V+ VP   +D++    + HQG+  + AP     LD V       S L++VLD + DPHN 
Sbjct: 65  VQFVPRSRLDEMA---SAHQGVIAQVAPYAYVDLDDVTRRDTGFSPLVVVLDEIADPHNF 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILR+A A    G++  KR     + V+AK+A+GALE +P  R++N+  ALQ++   G+
Sbjct: 122 GAILRTAEAAGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVARVANVAQALQRLKQAGY 181

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G   ++K P  +       A+++G+EG+G+R   +E    +  + + G +++LN S 
Sbjct: 182 WIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNASV 241

Query: 268 AAAVALY 274
           AA V LY
Sbjct: 242 AAGVLLY 248


>gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
           19977]
 gi|254806513|sp|B1MGY6|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572
 gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 315

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 8/185 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           VP   +D++     +HQGLAL+  P        L     A     LL+ LD+++DP N+G
Sbjct: 124 VPRPDLDRM-STNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRNLG 182

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+     G  
Sbjct: 183 AIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKGIT 242

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +     L+       IA+++G+EGKGL    ++T  ++  + M G +++LN S A
Sbjct: 243 IVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGPVESLNASVA 302

Query: 269 AAVAL 273
           A V L
Sbjct: 303 AGVVL 307


>gi|257470689|ref|ZP_05634779.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317064895|ref|ZP_07929380.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313690571|gb|EFS27406.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 235

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 82/140 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++LD + DP N GA++RSA  F   GII  +R +   +  + K+++GA+EH+  ++++
Sbjct: 89  IVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRVNETVVKTSTGAIEHVDIVKVT 148

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+++AL K+    +   G   +  K   +E    + AL+LG+EG G+R K +E    +  
Sbjct: 149 NISEALLKLKKLDYWVYGAEGEGSKDYSKEKYPSRTALVLGSEGNGIRKKVKENCDVLIK 208

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G I +LNVS A  + L
Sbjct: 209 IPMYGKINSLNVSVAGGIIL 228


>gi|167629448|ref|YP_001679947.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
 gi|167592188|gb|ABZ83936.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
          Length = 256

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 95/171 (55%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    AP+    ++ +            +++LD + DPHNIGA+LR+A      G+I
Sbjct: 72  HQGIIAHVAPVAYVEVEEILEKAKAKGEPPFVLLLDGLEDPHNIGALLRTAEGAGAHGVI 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR   + ++ +AK+++GA+E++P  R++NL   + ++   G   IG + D+ +P  ++
Sbjct: 132 IPKRRGGAITSTVAKASAGAVEYVPIARVTNLVQTVGQLKKAGLWIIGSAMDAPRPYFRQ 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                + LI+G+EGKG+ P  +E    +  + M G + +LN S A A+ +Y
Sbjct: 192 DFRGPVGLIVGSEGKGISPLLREHCDHLVSIPMGGKVDSLNASVAGALLMY 242


>gi|187735575|ref|YP_001877687.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425627|gb|ACD04906.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 193

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 13/182 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V++ P +   K +G+E            +L   LD   N  LL++LD V DPHN+GAILR
Sbjct: 18  VRSAPSKIAVKALGEE------------VLDGILDKSSNP-LLLILDCVQDPHNLGAILR 64

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A     D +I  +  S   +  + + + GA E +P+I+++NL   ++++ S G    G 
Sbjct: 65  TADGAGVDAVIAPRDKSVGITETVLRVSVGAAEKVPFIQVTNLARTMKQLQSRGIWIFGT 124

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S    + L +       AL++GAEG+G+R  T+E    +  + M G I  LNVS A  V 
Sbjct: 125 SDKGDRGLYETDFTGPAALVMGAEGEGMRRLTEENCDFLLRIPMKGSIPCLNVSVATGVC 184

Query: 273 LY 274
           LY
Sbjct: 185 LY 186


>gi|148244642|ref|YP_001219336.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326469|dbj|BAF61612.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 247

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 23/244 (9%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLD--------WDANLPHPFPVKTVP 97
           +++ + G H + A L  NP   I   +  K    RL+        +D N+     V+   
Sbjct: 3   KSIIITGFHAIQAQLKFNPKYLIKIFILNKRCDKRLNTLILEINNFDINIQQCTKVQ--- 59

Query: 98  PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAI 150
              +DK+   +  HQG+A E   P+L    + +       N+ L+++LD + DP N+GA 
Sbjct: 60  ---LDKLSNYQT-HQGIAAEILLPILPNQCELITYVSKLDNASLILILDSIQDPRNLGAC 115

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA A   D +I  K  S S SA++ K+++GA+  I   +++NL+  ++ +       I
Sbjct: 116 LRSANAAGVDCVIINKDGSASISALVHKTSAGAINQIKIFQVTNLSRTIKALQQQNIWVI 175

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL S +   + Q       A+I+G+EG GL+  T+++   +A + M G +++LNVS A  
Sbjct: 176 GLDSSANTLIYQIDLTTPNAIIMGSEGFGLKRLTKQSCDQLAKIPMQGKVESLNVSVATG 235

Query: 271 VALY 274
           + L+
Sbjct: 236 ITLF 239


>gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
           F0304]
 gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
           F0304]
          Length = 326

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+GA++RSA AF   G+I  +R S S +A   K ++GA  H+P  R+ 
Sbjct: 175 LFIALDGVTDPQNLGAVIRSAAAFGASGVILPERRSASVTAAAWKVSAGAAAHMPVARVV 234

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT A+  +   GF +IGL       +     + D + ++LG+EGKG+    +E   ++ 
Sbjct: 235 NLTKAIDSLKERGFYSIGLDGGGTAQVGYSGFETDPLIVVLGSEGKGISRLVREQCDAIV 294

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M  ++++LN S AA +AL+
Sbjct: 295 SIPMTSLVESLNASVAAGIALF 316


>gi|113971595|ref|YP_735388.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-4]
 gi|113886279|gb|ABI40331.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-4]
          Length = 246

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++G+H V A L +   +I +L L       RL         F   ++    + +D    
Sbjct: 6   IIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLDD-KA 64

Query: 107 KEAVHQGLA--LETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +   HQG+   ++ A +L+      L A  +   L++LD V DPHN+GA LR+A A    
Sbjct: 65  ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++   L
Sbjct: 125 GIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEADCEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+
Sbjct: 185 YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLF 238


>gi|239942333|ref|ZP_04694270.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
           11379]
 gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 318

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 88/172 (51%), Gaps = 8/172 (4%)

Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P        L    D      L++ LD V DP N+GAI+RS  AF   G++
Sbjct: 140 HQGLVLQVPPYEYAHPDDLLAAADDNHEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222
             +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D +  +E  
Sbjct: 200 VPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDL 259

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E  +  + +++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 260 EELDGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLY 311


>gi|157963403|ref|YP_001503437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella pealeana
           ATCC 700345]
 gi|157848403|gb|ABV88902.1| RNA methyltransferase, TrmH family, group 3 [Shewanella pealeana
           ATCC 700345]
          Length = 246

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 24/239 (10%)

Query: 52  YGVHTVSAAL-NNPSRKIFQLLATKNALARL--------DWDANLPHPFPVKTVPPQTID 102
           +G+H V A L N+P R I   +      ARL        +W  ++ +            D
Sbjct: 8   FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQY-----ASRKALDD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K  G +  HQG+  +  P        LS  L+       L++LD V DPHN+GA LR+A 
Sbjct: 63  KSDGGQ--HQGIVAKVKPAKILSDNELSAMLEKT-EVPFLLILDGVTDPHNLGACLRNAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  K  S   + V++K A GA E +P  +++NL   ++ +   G   IG + +
Sbjct: 120 AAGVHGVIVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGE 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q      +A+ +GAEGKGLR  ++E+  ++  + M G + +LNVS A  V L+
Sbjct: 180 ADCELYQASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLF 238


>gi|294789060|ref|ZP_06754300.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
           ATCC 29453]
 gi|294483162|gb|EFG30849.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
           ATCC 29453]
          Length = 249

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 116/236 (49%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL--LATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H ++A L   ++ I +L  L  KN +  R   +        V       ++ +  
Sbjct: 6   LIYGFHAINARLWQNAKSIIELYILENKNDVRTREVLEKAAQENVRVHFADTDRLNAM-A 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   LD +R    L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G     +  L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGEADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  +A ++G EG G+R  T+E   ++  + M G ++++N+S +A + L  T+
Sbjct: 185 HYDIPQAVAWVMGNEGAGMRRLTREHCDALVSIPMFGTVQSMNISVSAGMVLAETR 240


>gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
           D2]
 gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
           D2]
          Length = 248

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 10/236 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKI 104
           N  ++G H+V A L     +  ++ A K     RL+    L   F V    +  +T+D+ 
Sbjct: 3   NELIFGFHSVEAILAKEPERFIEIYALKGREDKRLNPILELAEQFGVSVQFMHRKTLDEK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              E  HQGL  +           LD +     +  L+VLD V DPHN+GA LRSA A  
Sbjct: 63  ADGEQ-HQGLIAKVKAGKTYSEKDLDEIIARHETPFLLVLDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   + V  K A GA E +P + ++NL   L+++   G   IG + ++  
Sbjct: 122 VHAVIVPKDNSAKLNGVARKVACGAAETVPLVHVTNLARTLREIKDAGVWVIGTAGETDT 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +        IAL++GAEG G+R  T+E   ++  + M G + +LNVS A  + L+
Sbjct: 182 HVFDAKLTGPIALVMGAEGTGMRRLTREHCDTLVKIPMVGTVSSLNVSVATGICLF 237


>gi|227496369|ref|ZP_03926659.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226834096|gb|EEH66479.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 330

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 8/174 (4%)

Query: 109 AVHQGLALET-APLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQG+A+E  A   +  LD      AV ++ LL+ LD V DPHN+GA+LRS  AF  DG
Sbjct: 145 AVHQGVAIEVPAYGYTSALDLLDRARAVGHTPLLVALDQVTDPHNLGAVLRSTGAFGGDG 204

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R S   +A + K ++GA   +P  R +NL   L+ +   G   +GL    +  +E
Sbjct: 205 VIIPERRSVGVNATVWKVSAGAAARVPVARETNLVRTLETLKKEGCFVVGLDGGGETLME 264

Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + +  + L+ GAEG GL    +ET   +A + +   +++LN + A  ++LY
Sbjct: 265 DLSLADSPLVLVTGAEGAGLSRLVRETCDVIASIPISQTVESLNAAVATGISLY 318


>gi|189485694|ref|YP_001956635.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287653|dbj|BAG14174.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 251

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 10/186 (5%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHNIG 148
           +VPP+ +DK        QG+  E +P+    L D +  S+     LL++LD + DPHN+G
Sbjct: 61  SVPPEKLDKF---SESSQGIVAEVSPVQYTELSDLIERSKKSLKPLLVILDGLEDPHNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R+ VAF  DG+I  K  +   +  ++KS++GA+EHI   R+ N   A+  +    F 
Sbjct: 118 AIIRNCVAFGADGVIIPKWRAAGVNETVSKSSAGAVEHISISRVENTNQAIGLLKENSFW 177

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +G + +  + LE+      +A+I+G+EG GL   T++ +  +  +    II +LN S A
Sbjct: 178 IVG-AENGGRILEKIDLPFPLAVIIGSEGFGLHSLTKKNSDFLISIPQENIISSLNASCA 236

Query: 269 AAVALY 274
           +AV LY
Sbjct: 237 SAVILY 242


>gi|78187470|ref|YP_375513.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
 gi|78167372|gb|ABB24470.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
          Length = 248

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 95/169 (56%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+A   + +    +   L A RNS  LL+VL  ++DPHNIGAI+R+A A + DG++  
Sbjct: 72  HQGVAALISTVSYYTVEELLAAPRNSAPLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLV 131

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +      +AV+ K+++GAL H+   ++ +L   L+ +H  G Q +    +++        
Sbjct: 132 EGKGAPVNAVVHKASAGALSHMRVAKVKSLVRCLELLHREGIQVLATDMEAETNYTDADF 191

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A++LGAEG GL P+  E    +  + M G +++LNVS +A V LY
Sbjct: 192 RKATAIVLGAEGSGLAPEAMEFCDRVVRIPMAGCVESLNVSVSAGVMLY 240


>gi|77361394|ref|YP_340969.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876305|emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 247

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 18/240 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTI 101
           N  ++G H+V A L +   +  ++ A K    R D       D  L     V+ +  + +
Sbjct: 3   NELIFGFHSVEAILASEPERFVEIYALK---GRDDKRSTPIIDEALKFGISVQYMQRKAL 59

Query: 102 D-KIVGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154
           D K  G++  HQG+   ++ AP  +   LDA+    ++  L+VLD + DPHN+GA LRSA
Sbjct: 60  DSKSKGEQ--HQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSA 117

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  S   +    K A GA E +P I+++NL   L+++   G   +G + 
Sbjct: 118 DAAGVHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAG 177

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 178 ETDNHVFDASLTGPMAIVMGAEGEGMRRLTREHCDLLVKIPMAGTVSSLNVSVATGICLF 237


>gi|198283233|ref|YP_002219554.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667862|ref|YP_002425465.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247754|gb|ACH83347.1| RNA methyltransferase, TrmH family, group 3 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520075|gb|ACK80661.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 255

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 11/232 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI-VGKEA 109
           LYG+H VSAAL+        +   + A  R+   A L      + +P Q    + +G++ 
Sbjct: 6   LYGIHAVSAALDAEELLELWVAVERRADERI---APLVQKAAEQRLPVQEWRSVALGRKL 62

Query: 110 ---VHQGLA--LETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
               HQG+   L   P       L  +     L+VLD V DPHN+GA LRSA A   D +
Sbjct: 63  NTDRHQGVGGLLRAFPGQDFEAILAQLNGCGFLLVLDGVLDPHNLGACLRSAEAAGVDAV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A + K+++G+   +P   ++NL+  L  +   GF  +G++ +  + L  
Sbjct: 123 ILPRDNACPVNATVRKASAGSASRVPVCTVTNLSRTLSSLQEAGFWLVGMAGEGSRSLYA 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  + +++G E KGLR  T+E    +AH+ M G I++LNVS A  + L+
Sbjct: 183 LDLDMPLVMVMGGEEKGLRRLTREHCDYLAHIPMMGAIESLNVSVATGICLF 234


>gi|229083411|ref|ZP_04215759.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
 gi|228699844|gb|EEL52481.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
          Length = 232

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+      A RN     ++LD + DPHN+G+
Sbjct: 39  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEAAAKRNEDPFFLILDEIEDPHNLGS 96

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  +  +   G   
Sbjct: 97  IMRTADATGAHGIIIPKRRAVGLTAAVAKASTGAIEYIPVARVTNLSRTIDDLKERGLWI 156

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K        N  I L++G+EGKG+     E    + +L M G + +LN S AA
Sbjct: 157 AGTDARGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLINLPMVGKVTSLNASVAA 216

Query: 270 AVALY 274
           ++ +Y
Sbjct: 217 SLLMY 221


>gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
 gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
          Length = 652

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 11/175 (6%)

Query: 109 AVHQGLALETAPLLSPTLD---------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +VHQG+AL+TA   + TLD          +    LL+ LD + DPHN+GA++RSA A   
Sbjct: 352 SVHQGIALQTA--AADTLDLSALIEGCSELGEPPLLLALDGITDPHNLGAVVRSAEAMGA 409

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +R S   +   AK A+GA+EH+P  R+ NL  +L+K+   G++ IGL+++    
Sbjct: 410 HGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSLEKLKDSGYRVIGLAAEGDVT 469

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L        + L+ G+E +GL   T+     +  + + GI  +LN S A A+ +Y
Sbjct: 470 LMDVDLEGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRGITPSLNASVATALCVY 524


>gi|88704452|ref|ZP_01102166.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
           litoralis KT71]
 gi|88701503|gb|EAQ98608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
           litoralis KT71]
          Length = 257

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 21/242 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIV- 105
           + +G+H V   L    + + +L   K   +   +           PV  +P   +D++V 
Sbjct: 5   YAFGLHAVEELLRRQPKTVRRLWVQKGRDDGRVQALLALATAADTPVSRLPRGKLDELVP 64

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ-------------LLMVLDHVNDPHNIGAILR 152
           G+   HQG+  E     +   D +R S+             L++VLD V DPHN+GA LR
Sbjct: 65  GR---HQGVVAELGDNTAGQSD-LRWSEAQLEQAVSGNPRALVLVLDGVTDPHNLGACLR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A     ++  K  +   +AV+ K A GA E +P +R++NL  +L  + + G    G 
Sbjct: 121 SADAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDMLKAAGVWIYGT 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++ + L        +AL++GAEG G+R  T+E    + +L M G + +LNVS A  V 
Sbjct: 181 AGEASESLYSSDLAGPLALVMGAEGAGMRRLTRERCDFLVNLPMAGAVSSLNVSVATGVC 240

Query: 273 LY 274
           L+
Sbjct: 241 LF 242


>gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
 gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
          Length = 318

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 9/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIG 148
           +P + +D+   + AVHQGL L+  P         + A RNS    L + LD V DP N+G
Sbjct: 121 IPREELDRKTNR-AVHQGLGLQVPPFEYAHPDDLMAAARNSGEVPLFVALDGVTDPRNLG 179

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RSA AF   G++  +R S   +AV  ++++G    +P    +NLT  L+   + G  
Sbjct: 180 AVIRSAAAFGAHGVLLPERRSAGMTAVAWRTSAGTAAKLPIAVATNLTRQLKAWANDGLM 239

Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +GL +D    +++ E+  D + ++LG+EG+GL    +ET  +   + M   +++LN S 
Sbjct: 240 LVGLDADGSVDIDELELAADPLVIVLGSEGRGLSRLVRETCDATVSIPMAAGVESLNASV 299

Query: 268 AAAVAL 273
           AA V L
Sbjct: 300 AAGVLL 305


>gi|296328929|ref|ZP_06871437.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153918|gb|EFG94728.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 234

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 85/144 (59%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           ++  L++VLD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++  
Sbjct: 85  KDKSLVLVLDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYVDI 144

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +++NL+D + K+    +   G + ++     +E  ++K+ L+LG EG G+R K +E   
Sbjct: 145 SKVTNLSDTINKLKKLDYWVYGAAGEANISYNEEDYSNKVVLVLGNEGSGIRKKVREHCD 204

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + M G I +LNVS A+ + L
Sbjct: 205 KLIKIPMYGQINSLNVSVASGILL 228


>gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 314

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 9/182 (4%)

Query: 101 IDKIVGKEAVHQGLA--LETAPLLSP----TLDAVRNS-QLLMVLDHVNDPHNIGAILRS 153
           +DK+ G  AVHQG+A  L       P     L A R    L+++LD V DP N+GA++RS
Sbjct: 127 LDKLTGG-AVHQGIAAKLNAYDYADPRDLLALAAERGEPALIVMLDGVTDPRNLGAVIRS 185

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F   G++  +R +   +A   K+++GA   +P  R++NLT  L+++   G   IGL+
Sbjct: 186 ASGFGAHGVVIPERRAAQITAAAWKTSAGAAARVPVARVTNLTRTLKELQEEGLMVIGLA 245

Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +D    L   ++ +  + +++G+EGKGL     ET   +  + M   +++LN   AA +A
Sbjct: 246 ADGDVELPSSQMLDGPVVVVIGSEGKGLSRLVGETCDELVSIPMSTGLESLNAGVAAGIA 305

Query: 273 LY 274
           LY
Sbjct: 306 LY 307


>gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624]
 gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624]
          Length = 249

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 121/244 (49%), Gaps = 18/244 (7%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH+V + L     ++  L   K     RL     L  PF   V+    ++
Sbjct: 2   AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRES 59

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILR 152
           ++K+ G    HQG+     P   PTL+        A     LL+ LD V DPHN+GA +R
Sbjct: 60  LEKLAGL-PFHQGVVAAVRPY--PTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIR 116

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG 211
           +A A     +I  +  S S +    K A+G  E + +I+++NL   L  +  +   + IG
Sbjct: 117 TAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIG 176

Query: 212 -LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +  +S  P+++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  
Sbjct: 177 TMLDESALPIQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATG 236

Query: 271 VALY 274
           +ALY
Sbjct: 237 MALY 240


>gi|145296637|ref|YP_001139458.1| hypothetical protein cgR_2545 [Corynebacterium glutamicum R]
 gi|140846557|dbj|BAF55556.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 313

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 102/190 (53%), Gaps = 8/190 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNS------QLLMVLDHVND 143
            PV  V    +D++ G   +HQG+ L   P   +   D + N+       + ++LD++ D
Sbjct: 114 IPVLEVNKLELDRMTGN-GMHQGIGLAIPPYEYADVHDLIANAATSKKPGMFVILDNITD 172

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++RS  AF  +G+I  +R S S +AV  ++++G    +P  + +N+T  +++  
Sbjct: 173 PRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQ 232

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+Q +GL +     L+     D + +++G+EGKG+    +E   ++  +   G +++L
Sbjct: 233 QNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIPTEGWVESL 292

Query: 264 NVSNAAAVAL 273
           N S AA V L
Sbjct: 293 NASVAAGVVL 302


>gi|120600217|ref|YP_964791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp.
           W3-18-1]
 gi|146291855|ref|YP_001182279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           putrefaciens CN-32]
 gi|120560310|gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp.
           W3-18-1]
 gi|145563545|gb|ABP74480.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           putrefaciens CN-32]
          Length = 246

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++G+H V A L +   +I +L L       RL   A+    F   ++    + +D    
Sbjct: 6   IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLADQAKAFGTTIQVASRKALDD-KA 64

Query: 107 KEAVHQGLA--LETAPLLSPT-LDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + + HQG+   ++ A +L+   LD +  N++   L++LD V DPHN+GA LR+A A    
Sbjct: 65  ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++   L
Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  V L+
Sbjct: 185 YQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLF 238


>gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           nigrificans DSM 574]
          Length = 252

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 10/192 (5%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142
            P++TV    +DK+V     HQG+    AP        +LS   +  ++  ++M LD +N
Sbjct: 56  IPIQTVDKTHLDKLVAGTP-HQGIIAYAAPKGYVDIEDILSVAKERGQDPFIVM-LDEIN 113

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAI+R+  A    GII  +R + + +A +A++++GA+E++P  R++NL   ++++
Sbjct: 114 DPHNLGAIIRTVDAAGAHGIIIPRRRAVALTATVARASAGAVEYVPVARVTNLDQTIRQL 173

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G   +G   D  +          + L++G EGKGL    +E    +  L M G + +
Sbjct: 174 KELGLWVVGADMDGPEVYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGHVGS 233

Query: 263 LNVSNAAAVALY 274
           LN S AAA+ +Y
Sbjct: 234 LNASVAAALLVY 245


>gi|313884744|ref|ZP_07818499.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620005|gb|EFR31439.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 266

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 14/174 (8%)

Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ +   P+   +L+       A       ++LD + DPHN+G+I+RSA A    GII
Sbjct: 87  HQGVVVTVPPVAYQSLEDCFALAEAKGQEPFFLILDGIEDPHNLGSIIRSADALGVHGII 146

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKMHSWGFQTIGLSSDSKKPL 220
             KR + S + ++AK+++GALEHIP +R++NL    D L+    W F T     D +   
Sbjct: 147 IPKRRAASLTGIVAKTSTGALEHIPVVRVTNLGQVVDQLKTKGVWIFATDMAGQDIRSWN 206

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      IA+I+G EG+G+  K  + A     + M G +++LN S AA++ +Y
Sbjct: 207 SQ----GPIAVIIGNEGQGVSKKLLDHADQTITIPMVGHVQSLNASVAASIIMY 256


>gi|281492485|ref|YP_003354465.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376149|gb|ADA65640.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 242

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 23/239 (9%)

Query: 50  FLYGVHTVSAALNNP-SRKIF--QLLATKNA-----LARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V+ ALN     K++  + L  KN      LARL           +   P   +
Sbjct: 6   LIYGLHAVTEALNGDLVNKLYVQEDLRGKNVEKIKELARL-------KKVNISWTPKTEL 58

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           +K+  +  VHQG     +      L+ +      ++   +++LD + DPHN+G+I R+A 
Sbjct: 59  NKLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D II  K  +   +    K+++GAL+H+P +R++NL+  L K+ +  F   G   D
Sbjct: 118 ATGVDAIIIPKHRAVGITPTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMD 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +   K  K+ALI+G EG G+    ++    M  + M G +++LN S AA++ +Y
Sbjct: 178 GTVYSKWNTKG-KVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMY 235


>gi|300173976|ref|YP_003773142.1| TrmH family RNA methyltransferase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888355|emb|CBL92323.1| RNA methyltransferase, TrmH family, group 3 [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 252

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ L  A     T+D +  N++        ++LD + DPHN+G+ILR+A A    GII
Sbjct: 74  HQGVVLSVAAFNYATIDDLFENAKKHEAEPFFLILDGIEDPHNLGSILRTADAAGVHGII 133

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +A +AK ++GA+EH+P  R++NL + + ++   G    G     +     +
Sbjct: 134 IPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNTVSELKDRGIWVFGTDMAGEDYRRWD 193

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K    ALI+G EGKG+ P  ++   SM  + M G +++LN S AA++ +Y
Sbjct: 194 AKG-ATALIIGNEGKGISPLLKKKVDSMLTIPMTGHVQSLNASVAASLLMY 243


>gi|330720741|gb|EGG98965.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC2047]
          Length = 244

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 87/143 (60%), Gaps = 3/143 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V D HN+GA LRSA A     ++  K  S   ++V++K ASGA E +P+++++
Sbjct: 94  LVLVLDGVTDTHNLGACLRSADAAGVTAVVVPKDNSADLNSVVSKVASGAAETLPFVKVT 153

Query: 194 NLTDALQKMHSWGFQTIGLSSD-SKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           NL   ++ M   G    G + D S +PL E ++   ++ +++G+EGKG+R  TQE    +
Sbjct: 154 NLARTMKAMQDRGLWITGTAVDESSRPLYEADLTGPRV-IVMGSEGKGMRRLTQEHCDEL 212

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            ++ M G + +LNVS A  V L+
Sbjct: 213 VYIPMAGEVSSLNVSVATGVCLF 235


>gi|309380106|emb|CBX21517.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 250

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V  V    +D I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65

Query: 108 EAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A      +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLGETR 240


>gi|170017894|ref|YP_001728813.1| rRNA methylase [Leuconostoc citreum KM20]
 gi|169804751|gb|ACA83369.1| rRNA methylase [Leuconostoc citreum KM20]
          Length = 253

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 96/173 (55%), Gaps = 12/173 (6%)

Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ L  A     T+D       A   +   ++LD + DPHN+G+ILR+A A    GII
Sbjct: 75  HQGVVLSVAAFAYATVDDLFDFADAHHEAPFFLILDGIEDPHNLGSILRTADAAGVHGII 134

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLE 221
             KR +   +A +AK ++GA+EH+P  R++NL + + ++   G    G  +S D  +  +
Sbjct: 135 IPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNVVGELKDRGVWVFGTDMSGDDYRRWD 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +      AL++G EGKG+ P  ++   SM  + M G +++LN S AA++ +Y
Sbjct: 195 AK---GPTALVIGNEGKGISPLLKKKVDSMLTIPMVGHVQSLNASVAASLLIY 244


>gi|167625583|ref|YP_001675877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           halifaxensis HAW-EB4]
 gi|167355605|gb|ABZ78218.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           halifaxensis HAW-EB4]
          Length = 246

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 26/240 (10%)

Query: 52  YGVHTVSAAL-NNPSRKIFQLLATKNALARL--------DWDANLPHPFPVKTVPPQTID 102
           +G+H V A L N+P R I   +      ARL        +W  +      V+    + +D
Sbjct: 8   FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVS------VQYASRKALD 61

Query: 103 -KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            K  G +  HQG+  +  P        LS  L+       L++LD V DPHN+GA LR+A
Sbjct: 62  EKSDGGQ--HQGVVAKVKPAKILSDNELSAMLEKT-EVPFLLILDGVTDPHNLGACLRNA 118

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G+I  K  S   + V++K A GA E +P  +++NL   ++ +   G   IG + 
Sbjct: 119 DAAGVHGVIVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAG 178

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +A+ +GAEGKGLR  ++E+  ++  + M G + +LNVS A  V L+
Sbjct: 179 EADCELYQASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLF 238


>gi|309798502|ref|ZP_07692784.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis
           SK1302]
 gi|308117874|gb|EFO55268.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis
           SK1302]
          Length = 222

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 17/204 (8%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIF--QLLATKNA--LARLDWDANLPHPFPVKTVPPQTID 102
           N  +YGVH V+ AL  N   K++  + L  KN   +  L  +  +   +  K    +  +
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTE 74

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                 AVHQG  L  +      L+ +        + LL++LD + DPHN+G+ILR+A A
Sbjct: 75  G-----AVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADA 129

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            +  G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   + 
Sbjct: 130 TNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG 189

Query: 217 KKPLEQEIKNDKIALILGAEGKGL 240
             P  +     KIALI+G EGKG+
Sbjct: 190 -TPCHKWNTKGKIALIIGNEGKGI 212


>gi|327395414|dbj|BAK12836.1| 23S rRNA RlmB [Pantoea ananatis AJ13355]
          Length = 188

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 4/164 (2%)

Query: 115 ALETAPLLS----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           A E  P +S    P L        L+VLD V DPHN+GA LRSA A     +I  K  S 
Sbjct: 17  ACEAGPPVSGRRLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGAHAVIVPKDRSA 76

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +A   K ASGA E++P IR++NL   L+ +  +    +G + ++   + Q      +A
Sbjct: 77  PLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTVYQSKMTGPMA 136

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 137 LVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 180


>gi|301067314|ref|YP_003789337.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|300439721|gb|ADK19487.1| rRNA methylase [Lactobacillus casei str. Zhang]
          Length = 259

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           T    + F++G H V AAL   +     K+F     K+   +            V T P 
Sbjct: 9   TEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPK 68

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAIL 151
           Q +D ++  +  HQG+ L   P    TLD + +N+         ++LD++ DPHN+G+IL
Sbjct: 69  QKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSIL 127

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G
Sbjct: 128 RTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMWVFG 187

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + D +   + + K    AL++G EGKG+ P   +   +   + M G +++LN S AA +
Sbjct: 188 TAMDGQDYRKWDAKG-STALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGI 246

Query: 272 ALY 274
            +Y
Sbjct: 247 LMY 249


>gi|292670592|ref|ZP_06604018.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
           noxia ATCC 43541]
 gi|292647758|gb|EFF65730.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
           noxia ATCC 43541]
          Length = 272

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 13/261 (4%)

Query: 31  KKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDA 85
           ++M+   Q  R T   E+    L G H V  A+    R I ++L       +  R   D 
Sbjct: 3   RRMKHTEQHQRGTRPVEHRSDILAGRHAVMEAMK-AGRGINRILLADGLHGSGVRELRDL 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVL 138
              +      V    +D  V +   HQG+    AP+    +   + A R      LL++L
Sbjct: 62  AREYGVATDVVSRSKLDAAVPEGVRHQGVIAYAAPVSYVSVEEIIAAARARGEDPLLLLL 121

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+GA+LR+A A    GI+  +R+S   +  +A+ ++GALE++P  RI N+   
Sbjct: 122 DGIEDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQT 181

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ +   GF   G   D  +  ++      + L++G+EG+G+   T+E       L M G
Sbjct: 182 MRALKEQGFWIAGADMDGTETYDRANLTGALVLVIGSEGRGMSRLTREICDFTVRLPMCG 241

Query: 259 IIKALNVSNAAAVALYITQNH 279
            I +LN S A A+ +Y  Q  
Sbjct: 242 KINSLNASAAGAILMYEAQRQ 262


>gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
 gi|306533267|gb|ADN02801.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
          Length = 241

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 9/186 (4%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLL-SPTLDAV----RNSQLLMVLDHVNDPHNIG 148
           +    Q + + VG    H+G ALE        TLD +      + LL+ LDH+ DPHN+G
Sbjct: 51  EVCSAQELSRYVGS---HRGFALEVLRTFKEATLDDLCERAEENALLVALDHLQDPHNVG 107

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA  F   G+I  +R +  ++A ++KS+SGA   +P +  +NL  AL  +   GF 
Sbjct: 108 AILRSADQFGALGVILPERRAVKDAATISKSSSGADAFVPVVVETNLRRALLHVKEAGFW 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G   +  +P+ +   + ++ L+LGAEGKGL    +E    +  +   G + + NVS A
Sbjct: 168 VYGADMEG-QPVHEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAIPARGHVDSFNVSVA 226

Query: 269 AAVALY 274
           A + +Y
Sbjct: 227 AGILMY 232


>gi|296111487|ref|YP_003621869.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295833019|gb|ADG40900.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 253

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTV 96
           KS H +  E  F+YG +    AL       K++     ++ +              ++  
Sbjct: 2   KSEHQAPNETGFIYGHYASVEALKGTQEINKVWLQTGLQDKIRHSVTQLAKKKGLVIQQA 61

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGA 149
           P   +D++      HQG+ L  A     T+D +  N++        ++LD + DPHN+G+
Sbjct: 62  PKSKLDELT-DGGNHQGVVLSVASFNYATIDDLFENAKKHQAEPFFLILDGIEDPHNLGS 120

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A A    GII  KR +   +A +AK ++GA+EH+P  R++NL + + ++   G   
Sbjct: 121 ILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVTRVTNLVNTVSELKDRGLWV 180

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G +  + +           ALI+G EGKG+ P  ++   SM  + M G +++LN S AA
Sbjct: 181 FG-TDMAGEDYRHWDATGATALIIGNEGKGISPLLKKKVDSMLTIPMIGHVQSLNASVAA 239

Query: 270 AVALY 274
           ++ +Y
Sbjct: 240 SLLIY 244


>gi|138893766|ref|YP_001124219.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196251123|ref|ZP_03149802.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           G11MC16]
 gi|134265279|gb|ABO65474.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196209364|gb|EDY04144.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           G11MC16]
          Length = 246

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 11/201 (5%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133
           LDW         V+ VP + +D++   E  HQG+  + A      +D +         + 
Sbjct: 39  LDWAKR--RGVIVQYVPKRKLDQMA--EGAHQGVIAQVAAYRYYEVDDLFARAAERGEAP 94

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VLD + DPHN+GAI+R+A A    G+I  KR S   +  +AK+++GA+EHIP  R++
Sbjct: 95  FFLVLDELEDPHNLGAIMRTADAVGAHGVIIPKRRSVGLTPTVAKASTGAIEHIPVARVT 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   + ++   G    G  + +K           +AL++G+EGKG+     E    +  
Sbjct: 155 NLARTIDELKERGVWVAGTDAAAKDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFR 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L M G + +LN S AA++ +Y
Sbjct: 215 LPMRGHVTSLNASVAASLLMY 235


>gi|224368949|ref|YP_002603113.1| RNA methyltransferase (TrmH family protein, group 3)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691666|gb|ACN14949.1| RNA methyltransferase (TrmH family protein, group 3)
           [Desulfobacterium autotrophicum HRM2]
          Length = 253

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHP--FPVKTVPPQTIDKIVG 106
            L G+H +  AL    RK + +L +K+ + ARL     +      PV+     T+D +  
Sbjct: 10  ILCGIHPIREALRAGRRKFYAILVSKDRSRARLAEILGVAQEQSIPVEITDTMTLDALT- 68

Query: 107 KEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+A   +P  +   + +        +++ ++V++ + DP N GA++R+A+    
Sbjct: 69  DNARHQGVAARVSPFATVRAEGIVKQMPKGVSNRFILVIETLEDPQNFGALIRTALCAGV 128

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D I+  K  S S S  ++++++GA+EH     I+N    L+++ + GF   GL      P
Sbjct: 129 DHIMIPKERSASPSPSVSRASAGAMEHAEISLITNTAGLLRQLKAMGFWVAGLDGQGTTP 188

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L        + L++G E KG+RP  ++    +  L +   + +LN S A  +A+Y
Sbjct: 189 LFSADLTGNLVLVVGGEHKGIRPLVKKECDFLVSLPIKAGVTSLNASVAGGIAMY 243


>gi|118594777|ref|ZP_01552124.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440555|gb|EAV47182.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 248

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 80/140 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++LD V DPHN+GA  R A A     II  K  +   +A + K A G  E +P+I ++
Sbjct: 99  LLLILDGVEDPHNLGACFRVADAMGVHAIICPKDSAVGVNATVRKVACGGAESVPFIAVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++ +   G   IG   ++K  L QE     IA++LG+EGKG+R  T+E   S+  
Sbjct: 159 NIGRTIRTLKDQGLFIIGTDGEAKHNLYQENLKGPIAMVLGSEGKGMRRLTRELCDSLVS 218

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G +++LNVS A+ + L
Sbjct: 219 IPMFGQVESLNVSVASGICL 238


>gi|238926114|ref|ZP_04657874.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
 gi|238886004|gb|EEQ49642.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
          Length = 272

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 7/198 (3%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141
           H   V TV    +D +V ++  HQG     AP+    ++ V           LL++LD +
Sbjct: 68  HGIMVDTVGRSKLDALVSQDVRHQGAVAYVAPVAYVAVEEVIAGARARGEDPLLLLLDGI 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GA+LR+A A    GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ 
Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRA 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF   G     ++  ++      + L++G+EG+G+   T++       L M G I 
Sbjct: 188 LKEQGFWIAGADMGGEEIYDRANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMMGKIN 247

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN S A A+ +Y  Q  
Sbjct: 248 SLNASVAGAILMYEAQRQ 265


>gi|116495758|ref|YP_807492.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|239630169|ref|ZP_04673200.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|116105908|gb|ABJ71050.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|239527781|gb|EEQ66782.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 259

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           T    + F++G H V AAL   +     K+F     K+   +            V T P 
Sbjct: 9   TEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPK 68

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAIL 151
           Q +D ++  +  HQG+ L   P    TLD + +N+         ++LD++ DPHN+G+IL
Sbjct: 69  QKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSIL 127

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G
Sbjct: 128 RTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMWVFG 187

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + D +   + + K    AL++G EGKG+ P   +   +   + M G +++LN S AA +
Sbjct: 188 TAMDGQDYRKWDAKG-STALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLNASVAAGI 246

Query: 272 ALY 274
            +Y
Sbjct: 247 LMY 249


>gi|253577160|ref|ZP_04854480.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843404|gb|EES71432.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 250

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 97/173 (56%), Gaps = 9/173 (5%)

Query: 111 HQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+  + AP     +D +  R  +      L++LD + DPHN+G+ILR+A      G+I
Sbjct: 68  HQGVVAQVAPYAYAEVDDLLARAQERGEPPFLLILDEIEDPHNLGSILRTAECTGVHGVI 127

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR S + +A ++K+++GA+E++P  R++NL   ++++   G   +G    +K+ + + 
Sbjct: 128 IPKRRSAAVTATVSKTSAGAVEYVPVARVTNLVQTMEQLKEAGVWIVGTDVGAKEEMYRS 187

Query: 224 --IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +    +A+++G E KG+    +ET   +  L M G + +LN S AA V +Y
Sbjct: 188 GNVLTGPVAIVIGNENKGMGRLVRETCDVLVKLPMNGRLNSLNASVAAGVIMY 240


>gi|269217458|ref|ZP_06161312.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269213079|gb|EEZ79419.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 326

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 11/177 (6%)

Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFS 158
           AVHQG+A+E  P        L+       R  +  L++ LD V DPHN+GA++RSA AF 
Sbjct: 140 AVHQGVAIEVPPYEYADVEDLVERAGKGARAGRPGLVVALDSVTDPHNLGAVMRSASAFG 199

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DG++  +R S   +A + K ++GA   +P  R+ NL  AL K+ + G+  +GL      
Sbjct: 200 ADGVVVPERRSAGVNATVWKVSAGAAARVPAARVPNLVAALGKLKTRGYFAVGLDGRGDT 259

Query: 219 PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +E     +  I L+ G+EGKGL   T+ET  ++A + +   +++LNV+ A  +ALY
Sbjct: 260 AIEDISFADAPIVLVTGSEGKGLARLTRETCDAIASVPIAAELESLNVAVATGIALY 316


>gi|191639244|ref|YP_001988410.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
 gi|190713546|emb|CAQ67552.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
 gi|327383324|gb|AEA54800.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
           LC2W]
 gi|327386507|gb|AEA57981.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
           BD-II]
          Length = 259

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           T    + F++G H V AAL   +     K+F     K+   +            V T P 
Sbjct: 9   TEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPK 68

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAIL 151
           Q +D ++  +  HQG+ L   P    TLD + +N+         ++LD++ DPHN+G+IL
Sbjct: 69  QKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSIL 127

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +        G
Sbjct: 128 RTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERSMWVFG 187

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + D +   + + K    AL++G EGKG+ P   +   +M  + M G +++LN S AA +
Sbjct: 188 TAMDGQDYRKWDAKG-STALVIGNEGKGISPGVAKLMDAMIAIPMVGHVQSLNASVAAGI 246

Query: 272 ALY 274
            +Y
Sbjct: 247 LMY 249


>gi|148543542|ref|YP_001270912.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184152948|ref|YP_001841289.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227363502|ref|ZP_03847622.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           MM2-3]
 gi|227545181|ref|ZP_03975230.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           CF48-3A]
 gi|300909142|ref|ZP_07126603.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|325681891|ref|ZP_08161409.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530576|gb|ABQ82575.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           DSM 20016]
 gi|183224292|dbj|BAG24809.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227071439|gb|EEI09742.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           MM2-3]
 gi|227184827|gb|EEI64898.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           CF48-3A]
 gi|300893007|gb|EFK86366.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|324978535|gb|EGC15484.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 249

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V  VP   +D +  ++  HQG+ L  A     T+D + ++          ++LD + DPH
Sbjct: 53  VSNVPKNKLDLMTDRQN-HQGVVLAVAAYQYATIDDLFDNAAKHDEDPFFLILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  +R +   ++V+AK+++GA+EH+P  R++NL    +++   
Sbjct: 112 NLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQER 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G     K     +  +  +AL++G EGKG+    ++T   M  + M G +++LN 
Sbjct: 172 GVWLFGTDMKGKDYRTWD-AHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNA 230

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 231 SVAASLLIY 239


>gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 356

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 14/195 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQL--LMVLDH 140
            PV  V    +D+I G +AVHQGLAL+  P        LL  T+      QL  L+ LD 
Sbjct: 154 IPVLEVMRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTIS---RGQLPLLVALDG 210

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+GAI+RS  AF   G+I  +R S   +A   K+++GA    P    SNLT  L+
Sbjct: 211 ITDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLK 270

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +   G   +GL       L +    D+ I +++G+EGKGL     ET  ++  + +   
Sbjct: 271 ALKQRGVFVVGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTVVSIPIGAS 330

Query: 260 IKALNVSNAAAVALY 274
            ++LN   AA+V LY
Sbjct: 331 TESLNAGIAASVTLY 345


>gi|194468086|ref|ZP_03074072.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           100-23]
 gi|194452939|gb|EDX41837.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           100-23]
          Length = 249

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V  VP   +D +  ++  HQG+ L  A     T+D + ++          ++LD + DPH
Sbjct: 53  VSNVPKNKLDLMTDRQN-HQGVVLAVAAYQYATIDDLFDNAAKHGEDPFFLILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  +R +   ++V+AK+++GA+EH+P  R++NL    +++   
Sbjct: 112 NLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQER 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G     K     +  +  +AL++G EGKG+    ++T   M  + M G +++LN 
Sbjct: 172 GVWLFGTDMKGKDYRTWD-AHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNA 230

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 231 SVAASLLIY 239


>gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 318

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 14/175 (8%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           HQGL L+  P        L S   D   N++  L++ LD V DP N+GAI+RS  AF   
Sbjct: 140 HQGLVLQVPPYEYAHPEDLTSAAYD---NNEDPLIVALDGVTDPRNLGAIVRSVSAFGGH 196

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D +  +
Sbjct: 197 GVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTV 256

Query: 221 EQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E  E     + +++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 257 EDLEALAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLY 311


>gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222525486|ref|YP_002569957.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
           Y-400-fl]
 gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
           Y-400-fl]
          Length = 252

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 15/238 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPPQTIDKI 104
            LYG + V  +L    R++F  L    ++      A + +       PV+ +  QT+D+ 
Sbjct: 5   LLYGRNAVRESLR-ARRRVFHRLYVSQSVQESGIIAEIINLAQQAGVPVERIERQTLDRR 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL-------DHVNDPHNIGAILRSAVAF 157
           + ++A HQG+ LE  P     LD   N+             DH+ DP NIG +LR+A A 
Sbjct: 64  L-RDANHQGVMLEAEPYPYVELDTCLNAAAERREAALLLLLDHLQDPQNIGTLLRTAEAV 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
            C G++   R +   +  +  ++SGA+EH+    ++NL   ++++   G   +GL  D +
Sbjct: 123 GCHGVVIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLNQTIEELQHAGIWVVGLEQDEQ 182

Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +  D  +AL++GAEG G+    +E    +  L + G + +LN + A ++A+Y
Sbjct: 183 AQDIDAVDLDLPLALVIGAEGTGIARLVRERCDFLVRLPIVGQVGSLNAAIAGSIAIY 240


>gi|71282118|ref|YP_271263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Colwellia
           psychrerythraea 34H]
 gi|71147858|gb|AAZ28331.1| RNA methyltransferase, TrmH family, group 3 [Colwellia
           psychrerythraea 34H]
          Length = 251

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 14/238 (5%)

Query: 50  FLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            ++G+H V+A +N  P R I   L       R+    NL   + + T     + +D+   
Sbjct: 7   LVFGIHAVNALINAAPERFIEIWLLKGREDDRIMPIINLSRKYGIGTQLASRKALDEKSE 66

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVLDHVNDPHNIGAILRSAVA 156
            E  HQG+     P  S T + + +          +   ++LD V DPHN+GA LR+A A
Sbjct: 67  GEQ-HQGVIARVRPGKSYTENDIDDIILAAEKKSIAPFFLILDGVTDPHNLGACLRNADA 125

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                II  K  +   +  + K A GA+E +P ++++NL+  ++++   G   +G + ++
Sbjct: 126 AGVQAIIVPKDNAAQITPTVRKVAVGAVESVPLVQVTNLSRTMKQLQKQGVWIVGTAGET 185

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L     +  +AL++GAEGKG+R  T+E    +  L M G + +LNVS A  + L+
Sbjct: 186 DTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLVKLPMAGTVSSLNVSVATGICLF 243


>gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
           V453]
 gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
           V453]
          Length = 250

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 128/244 (52%), Gaps = 23/244 (9%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQ 99
           E   + G H+V+ AL +  R I ++   +NA   L     LP           ++ V  +
Sbjct: 4   EEEVVAGKHSVTEALKS-GRTINKIWIAENAQKHL----TLPIIAEAKKLGIVIQHVDKR 58

Query: 100 TIDKIV-GKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAIL 151
            +D++V G +  HQG+  + AP     + D ++ ++       L++LD + DPHN+G+IL
Sbjct: 59  KLDQMVPGVQ--HQGVVAQAAPYAYVEVEDLLKVAEEKGEPPFLLLLDEIEDPHNLGSIL 116

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G++  KR S   +A ++K+++GA+E++P  R++NL   + ++   G   +G
Sbjct: 117 RTADCTGAHGVVLPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVG 176

Query: 212 LSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              D+ + L + E+ +  +A+++G E KG+    +E    +  L M G I +LN S AA 
Sbjct: 177 TVVDAVQELYDTEVFDGPVAIVIGNESKGMGRLIREKCDVLVKLPMAGKINSLNASVAAG 236

Query: 271 VALY 274
           V +Y
Sbjct: 237 VVMY 240


>gi|227533680|ref|ZP_03963729.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227188664|gb|EEI68731.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 259

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           T    + F++G H V AAL   +     K+F     K+   +            V T P 
Sbjct: 9   TEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVSTAPK 68

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ------LLMVLDHVNDPHNIGAIL 151
           Q +D ++  +  HQG+ L   P    TLD + +N+         ++LD++ DPHN+G+IL
Sbjct: 69  QKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDPHNLGSIL 127

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G
Sbjct: 128 RTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKERGMWVFG 187

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + D +   + + K    AL++G EGKG+ P   +   +   + M G +++LN S AA +
Sbjct: 188 TAMDGQDYRKWDAKG-STALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGI 246

Query: 272 ALY 274
            +Y
Sbjct: 247 LMY 249


>gi|221194755|ref|ZP_03567812.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
           49626]
 gi|221185659|gb|EEE18049.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
           49626]
          Length = 323

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 6/189 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLD-AVRNSQLLMVLDHVNDPH 145
            PV+ VP Q +D +      HQG+ + T P     LS  L+ A     L++VLDHV D  
Sbjct: 124 VPVERVPRQVLDAL-SSHGAHQGVIVRTRPFEYAELSDILEKAGSKDALVVVLDHVTDEG 182

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI+RSA      G++     +        K+++GA+ H+P  R+SN++ AL+++ + 
Sbjct: 183 NFGAIVRSAEVVGAAGVVIANARAAQVGVGAYKTSAGAVLHVPIARVSNVSRALEELKAA 242

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF T G +  +   +       ++AL++G+EG G+     ET      L   G I++LNV
Sbjct: 243 GFWTCGATEHAADDVWSAPLGGRLALVMGSEGAGISRLVLETCDFACKLPQRGKIESLNV 302

Query: 266 SNAAAVALY 274
           + A  V  Y
Sbjct: 303 AQATTVMCY 311


>gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
           carboxydivorans Nor1]
 gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
           carboxydivorans Nor1]
          Length = 248

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    AP+    +D +         +  L++LD + DPHN+GAILR+A A    G++
Sbjct: 67  HQGVVAMVAPVAYVDVDEILVQAQTKGEAPFLVLLDELEDPHNVGAILRTADATGVHGVL 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR S   SA +AK+++GA+E++P  RI N+   L+K+   G   +G      K   + 
Sbjct: 127 LPKRRSCPLSATVAKTSAGAIEYVPVARIGNIVQTLEKLKKAGLWVVGADMAGDKAYYET 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                + +++G+EG+G+   T+E    +  + M G + +LN S A ++ LY
Sbjct: 187 DLTGPLVVVVGSEGRGMGRLTREACDFLVRIPMRGRLSSLNASVACSLILY 237


>gi|308389631|gb|ADO31951.1| RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 261

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V  V    +D I  K
Sbjct: 18  IYGFHAVNARLWQNPKSIVELYIQEGKNDARTREVLEKAANENIRVYFVDTTRLDAI-SK 76

Query: 108 EAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A      +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 77  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTANAMGVHAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 196

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 197 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 251


>gi|33594398|ref|NP_882042.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
           I]
 gi|33597117|ref|NP_884760.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis
           12822]
 gi|33600961|ref|NP_888521.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
           RB50]
 gi|52783303|sp|Q7VTK4|RLMB_BORPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783304|sp|Q7W7I7|RLMB_BORPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783305|sp|Q7WKX5|RLMB_BORBR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33564473|emb|CAE43786.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
           I]
 gi|33566568|emb|CAE37825.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis]
 gi|33575396|emb|CAE32473.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
           RB50]
 gi|332383809|gb|AEE68656.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis CS]
          Length = 245

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 86/153 (56%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LD +    LL++LD V DPHN+GA LR+A A     +I  +  +   +A + + A 
Sbjct: 85  IDEVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVAC 144

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA + +PY+ ++NL   ++++       +G    + + + Q      +A ++GAEG+G+R
Sbjct: 145 GAADTVPYLTVTNLARTMRELKERDVWLVGTDDQAGESMHQVDARRSMAWVMGAEGEGMR 204

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             T+ET   +  + M G +++LNVS A+AV LY
Sbjct: 205 RLTRETCDQLVRIPMLGSVESLNVSVASAVCLY 237


>gi|219849563|ref|YP_002463996.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
           DSM 9485]
 gi|219543822|gb|ACL25560.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
           DSM 9485]
          Length = 252

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 107/192 (55%), Gaps = 9/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVND 143
            P++ +  Q +D+ + ++A HQG+ LET P     LD       A R + LL++LDH+ D
Sbjct: 50  IPIERIERQILDRQL-RDANHQGVMLETGPYPYVELDECLSSANARREAALLLLLDHLQD 108

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+A A  C GII   R +   +  +  ++SGA+EH+    ++NL+  ++++ 
Sbjct: 109 PQNLGTLLRTAEAVGCHGIIIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLSQTIEELQ 168

Query: 204 SWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G   +GL  D + + ++    N  + L++GAEG G+    +E    +  L + G I +
Sbjct: 169 HNGIWVVGLEQDETAQDIDAVDLNLPLGLVIGAEGTGMSRLVRERCDFLVRLPIVGQIGS 228

Query: 263 LNVSNAAAVALY 274
           LN + A ++A+Y
Sbjct: 229 LNAAVAGSIAIY 240


>gi|282860521|ref|ZP_06269587.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
 gi|282564257|gb|EFB69793.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
          Length = 318

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 8/172 (4%)

Query: 111 HQGLALETAPLLSP-----TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P         T  A  N +  L++ LD V DP N+GAI+RS  AF   G++
Sbjct: 140 HQGLVLQVPPYEYAHPEDLTAAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222
             +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D +  +E  
Sbjct: 200 VPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDL 259

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E  +  + +++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 260 EQLSGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLY 311


>gi|184201514|ref|YP_001855721.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581744|dbj|BAG30215.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 322

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 11/178 (6%)

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS----------QLLMVLDHVNDPHNIGAILRSAVAF 157
           +A+HQG+ L+  P   P  D +  S           LL+  D + DP N+GAI+RS  AF
Sbjct: 136 DAIHQGVVLQVPPYEYPDADELAASVMHAADREHPPLLVAADGITDPRNLGAIIRSVSAF 195

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + DG+I  +R S   +A   K++SGA   +P  + +NLT  LQ     G+  +GL     
Sbjct: 196 AGDGVILPERRSAGVTATAWKTSSGAAARVPVAKATNLTRTLQNCKKQGYFVVGLDGGGD 255

Query: 218 KPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L Q E+  + + +++G+EGKGL     E   ++  + +   +++LN S A  + LY
Sbjct: 256 MSLPQLELATEPLVVVVGSEGKGLSRLVTEHCDAIVSIPIESAMESLNASMAVGITLY 313


>gi|332669127|ref|YP_004452135.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
           484]
 gi|332338165|gb|AEE44748.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
           484]
          Length = 335

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 9/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNS---QLLMVLDHVND 143
           +P+  V    +D++    +VHQG+A++  P         LDA   S    L++ LD V D
Sbjct: 136 YPLLEVSRTELDRLT-DGSVHQGVAIQVPPYAYADEEDLLDAAEVSGRPALVVALDGVTD 194

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LRSA AF   G++  +R +   +A   K ++GA   +P  R++NL   LQ   
Sbjct: 195 PRNLGAVLRSAGAFGAHGVLVPERRAAGVTASAWKVSAGAAARVPVARVTNLVRTLQAYK 254

Query: 204 SWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G   +GL     + + E     D + L++G+EGKGL    +E   ++A + +   +++
Sbjct: 255 EAGVFVVGLDGGGDQSVAELAFAEDPLVLVVGSEGKGLSRLVREQCDAIASIPIASAVES 314

Query: 263 LNVSNAAAVALY 274
           LN   AA +ALY
Sbjct: 315 LNAGVAAGIALY 326


>gi|257417470|ref|ZP_05594464.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG]
 gi|257159298|gb|EEU89258.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
          Length = 285

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 18/237 (7%)

Query: 50  FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           F++G H TV A       K+F Q  A    + +L   A      PVK VP   +D +   
Sbjct: 46  FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             VHQG+ L        TL+ +         +   ++LD + DPHN G+ILR+A A   D
Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217
           GII  K  +   +  + K+++GA+EHIP  R++NL  +   L++   W F T    +D +
Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 223

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   Q      IALI+G EG+G+     +    +  + M G +++LN   AA + +Y
Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276


>gi|332878889|ref|ZP_08446604.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332683240|gb|EGJ56122.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 246

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 11/239 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           Q +   +YG+  V  AL       K+F     +  L R           PV+ VP + ++
Sbjct: 2   QEQEYQIYGIRAVMEALEAGKTLDKVFVQKGLQGNLFRELLSLLQQSQVPVQYVPVEKLN 61

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K   HQG+    +P+       L  ++     + L ++LDH++D  N GAI+R+A 
Sbjct: 62  RLTKKN--HQGVVATLSPVDYHNFEDLVISVTESGATPLFLLLDHLSDVRNFGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  KR S S +A   K+++GA+  +P  ++ NL DA+  +   G + +  +  
Sbjct: 120 CAGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + L  E  +   A+++GAE  G+ P   +   S A L M G I +LNVS A AV LY
Sbjct: 180 TNQLLYAEDFSVPTAIVMGAEDVGISPAVLKVVDSKAKLPMKGEIGSLNVSVACAVFLY 238


>gi|213962013|ref|ZP_03390278.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           sputigena Capno]
 gi|213955366|gb|EEB66683.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           sputigena Capno]
          Length = 245

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 9/190 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDP 144
           PV+ VP + ++++  K   HQG+    +P+       L  ++     + L +VLDH++D 
Sbjct: 51  PVQYVPVEKLNRLTKKN--HQGVVANLSPVDYHNFEDLVISVTESGTTPLFLVLDHLSDV 108

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N GAI+R+A      GII  KR S S +A   K+++GA+  +P  ++ NL DA+  +  
Sbjct: 109 RNFGAIIRTAECTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQG 168

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +  +  + + L  E      A+++GAE  G+ P   +   S A L M G I +LN
Sbjct: 169 SGIRVVATTEKTNQLLYAEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLN 228

Query: 265 VSNAAAVALY 274
           VS A AV LY
Sbjct: 229 VSVACAVFLY 238


>gi|229547084|ref|ZP_04435809.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX1322]
 gi|255971593|ref|ZP_05422179.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|255974565|ref|ZP_05425151.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256618482|ref|ZP_05475328.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256761897|ref|ZP_05502477.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256855025|ref|ZP_05560386.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256956969|ref|ZP_05561140.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256960769|ref|ZP_05564940.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256964027|ref|ZP_05568198.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|257078646|ref|ZP_05573007.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|257088532|ref|ZP_05582893.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|257421386|ref|ZP_05598376.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|293382262|ref|ZP_06628202.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           R712]
 gi|293386689|ref|ZP_06631262.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           S613]
 gi|294780005|ref|ZP_06745384.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           PC1.1]
 gi|300862121|ref|ZP_07108201.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268964|ref|ZP_07550328.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4248]
 gi|307276292|ref|ZP_07557419.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2134]
 gi|307284105|ref|ZP_07564275.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0860]
 gi|307287135|ref|ZP_07567206.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0109]
 gi|307296637|ref|ZP_07576457.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0411]
 gi|312901249|ref|ZP_07760532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0470]
 gi|312903156|ref|ZP_07762337.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0635]
 gi|312908760|ref|ZP_07767699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 512]
 gi|312952481|ref|ZP_07771349.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0102]
 gi|312979220|ref|ZP_07790924.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 516]
 gi|229307813|gb|EEN73800.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX1322]
 gi|255962611|gb|EET95087.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|255967437|gb|EET98059.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256598009|gb|EEU17185.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256683148|gb|EEU22843.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256709538|gb|EEU24585.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256947465|gb|EEU64097.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256951265|gb|EEU67897.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256954523|gb|EEU71155.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|256986676|gb|EEU73978.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|256997344|gb|EEU83864.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|257163210|gb|EEU93170.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|291080376|gb|EFE17740.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           R712]
 gi|291083858|gb|EFE20821.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           S613]
 gi|294452899|gb|EFG21322.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           PC1.1]
 gi|295112380|emb|CBL31017.1| rRNA methylase, putative, group 3 [Enterococcus sp. 7L76]
 gi|300848646|gb|EFK76403.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TUSoD Ef11]
 gi|306495973|gb|EFM65561.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0411]
 gi|306501733|gb|EFM71024.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0109]
 gi|306503476|gb|EFM72725.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0860]
 gi|306507035|gb|EFM76178.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2134]
 gi|306514772|gb|EFM83323.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4248]
 gi|310625198|gb|EFQ08481.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 512]
 gi|310629577|gb|EFQ12860.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0102]
 gi|310633547|gb|EFQ16830.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0635]
 gi|311287985|gb|EFQ66541.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 516]
 gi|311291626|gb|EFQ70182.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0470]
 gi|315029624|gb|EFT41556.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4000]
 gi|315033510|gb|EFT45442.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0017]
 gi|315036333|gb|EFT48265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0027]
 gi|315143637|gb|EFT87653.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2141]
 gi|315149010|gb|EFT93026.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4244]
 gi|315151336|gb|EFT95352.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0012]
 gi|315153505|gb|EFT97521.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0031]
 gi|315155076|gb|EFT99092.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0043]
 gi|315158519|gb|EFU02536.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0312]
 gi|315163380|gb|EFU07397.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0645]
 gi|315165681|gb|EFU09698.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1302]
 gi|315168267|gb|EFU12284.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1341]
 gi|315171292|gb|EFU15309.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1342]
 gi|315174137|gb|EFU18154.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1346]
 gi|315578629|gb|EFU90820.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0630]
 gi|323479284|gb|ADX78723.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Enterococcus faecalis 62]
 gi|327533899|gb|AEA92733.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329576211|gb|EGG57729.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1467]
          Length = 285

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 18/237 (7%)

Query: 50  FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           F++G H TV A       K+F Q  A    + +L   A      PVK VP   +D +   
Sbjct: 46  FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             VHQG+ L        TL+ +         +   ++LD + DPHN G+ILR+A A   D
Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217
           GII  K  +   +  + K+++GA+EHIP  R++NL  +   L++   W F T    +D +
Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 223

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   Q      IALI+G EG+G+     +    +  + M G +++LN   AA + +Y
Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276


>gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
 gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X561]
 gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513]
 gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X514]
 gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X561]
 gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X513]
          Length = 247

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN+GAI+RSA AF   GII  KR +   +A + K+++GA+EH+   ++S
Sbjct: 97  FLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVS 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + ++ +   G   +G   +++K  E+   +  +A ++G EGKG+     +    +  
Sbjct: 157 NINNTIRDLKERGLWIVGTDVNAEKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVK 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA++ +Y
Sbjct: 217 IPMKGKINSLNASVAASILIY 237


>gi|34763276|ref|ZP_00144235.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887047|gb|EAA24159.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 234

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 86/146 (58%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A ++  L+++LD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++
Sbjct: 83  AEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++NL+D + K+    +   G + ++     +E  ++KI L+LG EG G+R K +E 
Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSNKIILVLGNEGSGIRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A+ + L
Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228


>gi|77918299|ref|YP_356114.1| rRNA methyltranferase [Pelobacter carbinolicus DSM 2380]
 gi|77544382|gb|ABA87944.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 246

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 130/237 (54%), Gaps = 14/237 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLD--WDANLPHPFPVKTVPPQTIDKIVG 106
            +YGV+ V  AL +  RK  +LL    A  +RL    +A       ++++  + +D +  
Sbjct: 4   LIYGVNPVLEALKSRQRKPLELLVLHGAESSRLSAVCEAARARRVAIRSLDRRELDALA- 62

Query: 107 KEAVHQGLAL----ETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159
           + A HQG+AL    ++   L   LD  RN+    +++VLD + DPHN+GA+ RSA A  C
Sbjct: 63  EGARHQGVALRLESQSVIALEDLLDLWRNAGGKGVILVLDGITDPHNLGALARSAEAVGC 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--SK 217
            GI+  K  S   +A   K+++GAL ++P  R++N+  +L+     GF   GL+ D  S+
Sbjct: 123 QGIVLPKDRSCPITAAAEKASAGALAYLPVCRVTNVARSLEVFKQAGFWVYGLAGDAGSQ 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + +++ + + L++G EGKGLR   ++   ++  + M G + +LN S A  VAL+
Sbjct: 183 SLYDTDLRGN-VVLVVGGEGKGLRDNVRKHCDALLAIPMRGQVSSLNASVAGGVALF 238


>gi|259502664|ref|ZP_05745566.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169309|gb|EEW53804.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 248

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ--LLMVLDHVNDPH 145
           + TVP   +D++   +  HQG+AL  A      +D     A R ++    ++LD + DPH
Sbjct: 53  ISTVPKTKLDQLTDHQN-HQGVALAVAAYHYADVDDLFANAARKNEDPFFLILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  +R +   ++V+AK+++GALEH+P  R++NL   ++++ + 
Sbjct: 112 NLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLVQTVKELKNR 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G     +     +  +  +AL++G EGKG+    ++    M  + M G +++LN 
Sbjct: 172 GVWLFGTDMKGRDYRTWD-AHGAVALVIGNEGKGISSLLKKNCDEMLTIPMVGHVQSLNA 230

Query: 266 SNAAAVALY 274
           S AA + +Y
Sbjct: 231 SVAAGLLIY 239


>gi|89100738|ref|ZP_01173593.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89084555|gb|EAR63701.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 247

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V+ VP + +D++   E +HQG+    A      +D +         +   ++LD + DPH
Sbjct: 50  VQFVPKKKLDQMA--EGIHQGVVAAVAAYEYAEVDDLFAAAEKKNEAPFFLLLDEIEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR +   +A +AK+++GA+EHIP  R++NL   + ++   
Sbjct: 108 NLGSIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLARTIDELKEK 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  +   +   +      + L++G+EGKG+    ++    + HL M G + +LN 
Sbjct: 168 GVWIAGTDAKGSEDYRRFDGTMPLGLVIGSEGKGMGRLIRDKCDFLIHLPMAGHVTSLNA 227

Query: 266 SNAAAVALY 274
           S AAA+ +Y
Sbjct: 228 SVAAALLMY 236


>gi|319425089|gb|ADV53163.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           putrefaciens 200]
          Length = 246

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 10/234 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++G+H V A L +   +I +L L       RL   A     F   ++    + +D    
Sbjct: 6   IIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLAEQAKVFGTTIQVASRKALDD-KA 64

Query: 107 KEAVHQGLA--LETAPLLSPT-LDAV-RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + + HQG+   ++ A +L+   LD +  N++   L++LD V DPHN+GA LR+A A    
Sbjct: 65  ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++   L
Sbjct: 125 GIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  V L+
Sbjct: 185 YQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLF 238


>gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK
           1622]
          Length = 282

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 129/262 (49%), Gaps = 12/262 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLD 82
           R   R  +++     +        + F+YGV+ V AAL     ++ +L   +  L AR  
Sbjct: 10  RGGERASEEVPQRASRGERGGGEASRFVYGVNPVLAALRARPDEVERLFLVEGQLGARAA 69

Query: 83  WDA-NLPHPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLD-------AVRNS 132
            +  +    F ++ V   T +++  + +  VHQG+ +E        L+       A+   
Sbjct: 70  GELLSRAREFGIR-VEKVTRERLGTLAEGGVHQGVVVELRGFKYAELEDLLEAAKALGQP 128

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD + DPHN+GAI+RSA A    G++  K  +   +  +AK+++GA+EH    R+
Sbjct: 129 PLVVVLDGIQDPHNLGAIIRSADALGAHGVVIAKDRAVQVTGTVAKASAGAVEHSRIARV 188

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N++ AL+++   G        D+K+P+     +  +AL++GAEG G+R    +      
Sbjct: 189 VNISRALEELKEAGLWVAAADVDAKEPMWSARLDGPLALVVGAEGAGVRDGVLKHCDFRL 248

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G + +LN S +A + LY
Sbjct: 249 RIPMAGQVGSLNASVSAGILLY 270


>gi|19704851|ref|NP_602346.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19712732|gb|AAL93645.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 234

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 85/144 (59%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           ++  L+++LD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++  
Sbjct: 85  KDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYVNI 144

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +++NL+D + K+    +   G + ++     +E  ++K+ L+LG EG G+R K +E   
Sbjct: 145 SKVTNLSDTINKLKKLDYWVYGAAGEANISYNEEDYSNKVVLVLGNEGSGIRKKVREHCD 204

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + M G I +LNVS A+ + L
Sbjct: 205 KLIKIPMYGQINSLNVSVASGILL 228


>gi|269103599|ref|ZP_06156296.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163497|gb|EEZ41993.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 247

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 29/246 (11%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI--- 101
           N  ++G+H V A L ++PSR I   +       RL     LP  +   +  V  Q     
Sbjct: 3   NEMIFGIHAVKAVLASDPSRFIEVFVLKGRQDERL-----LPILNELQMLGVTMQQAGRK 57

Query: 102 ---DKIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILR 152
              DK+ G  A HQG+     P        LDA+   + + LL++LD V DPHN+GA LR
Sbjct: 58  ALDDKVHG--ANHQGIVARVRPGKQFNENDLDAILAGKENPLLLILDGVTDPHNLGACLR 115

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQ 208
           +A A     II  K  S   +A  +K A GA E +P +R++NL   ++ +      W   
Sbjct: 116 NADAAGAVAIIVPKDRSAQLTATASKVACGAAEVVPLVRVTNLARTMRYLQEEKNIW--- 172

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +G + ++   + Q      +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A
Sbjct: 173 IVGTAGEATHDIYQTKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVA 232

Query: 269 AAVALY 274
           + + L+
Sbjct: 233 SGICLF 238


>gi|254516842|ref|ZP_05128900.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR5-3]
 gi|219674347|gb|EED30715.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR5-3]
          Length = 256

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 16/196 (8%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------------LLMVL 138
           PV  +P   +D++V     HQG+  +         D +R S+             L++VL
Sbjct: 49  PVSRLPRVKLDELVSGR--HQGVVAQLGENTEEQAD-LRWSEEQLARAVTYNPRALVLVL 105

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DPHN+GA LRSA A     ++  K  +   +AV+ K A GA E +P +R++NL  +
Sbjct: 106 DGVTDPHNLGACLRSADAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARS 165

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  + + G    G + ++ + L        +AL++GAEG G+R  T+E    +  L M G
Sbjct: 166 LDALKAAGVWIYGTAGEAGESLYSTELKGAVALVMGAEGAGMRRLTRERCDFLLSLPMAG 225

Query: 259 IIKALNVSNAAAVALY 274
            + +LNVS A  V L+
Sbjct: 226 SVTSLNVSVATGVCLF 241


>gi|313668627|ref|YP_004048911.1| RNA methylase [Neisseria lactamica ST-640]
 gi|313006089|emb|CBN87550.1| putative RNA methylase [Neisseria lactamica 020-06]
          Length = 250

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V  V    +D I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65

Query: 108 EAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A      +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 186 CNLPDSAAWVMGNEGGGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|226309787|ref|YP_002769681.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|226092735|dbj|BAH41177.1| probable 23S rRNA (guanosine-2'-O-)-methyltransferase
           [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 103/189 (54%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V T   + +D++V  +  HQG+    A      +D +         +  +++LD + DPH
Sbjct: 50  VTTANRKKLDQLVSTDN-HQGVVASVAAYDYVEVDDILKRAEEKNEAPFILLLDELEDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    G+I  KR S S +A +AK+++GA+ ++P  R++NL   ++++   
Sbjct: 109 NLGSIMRTADAVGAHGVIIPKRRSVSLTATVAKASAGAINYVPVARVTNLVRTMEELKER 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  + +K+   Q      +A+++G+EGKG+    +E    +  L M G + +LN 
Sbjct: 169 GVWIAGTDASAKQDFRQGDYTMPLAIVIGSEGKGMSRLVRENCDFLYSLPMAGNVTSLNA 228

Query: 266 SNAAAVALY 274
           S AAA+ +Y
Sbjct: 229 SVAAALLMY 237


>gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec]
 gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec]
          Length = 386

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 8/180 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D++ G  A HQGLAL   P      D V          L++ LD V DP N+GA++RSA
Sbjct: 195 LDRLCGT-APHQGLALSVPPFEYAHPDDVLAAAQAAAPGLVVALDGVTDPRNLGAVVRSA 253

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G++  +R +   +A   K+++GA   +P  R  NLT  L+     G   +GL++
Sbjct: 254 AAFGASGVVVPERRAAGVTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLAA 313

Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  L++ ++  D + L++G+EGKGL     E       + M G +++LN   A  +AL
Sbjct: 314 DGEVSLDELQVATDPLVLVIGSEGKGLSRLVGECCDLRVRIPMAGQVESLNAGVATGIAL 373


>gi|291541741|emb|CBL14851.1| rRNA methylase, putative, group 3 [Ruminococcus bromii L2-63]
          Length = 252

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 12/247 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           N++  +T Q  ++ + G + VS A+  N P  KI      K+               PVK
Sbjct: 3   NERFENTEQKPDV-IAGRNPVSEAVRSNRPIDKILVAKGEKSGAIVGILAKARDKKIPVK 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147
            V    +D + G  A HQG+    A     T+D +         +  ++VLD V DPHN+
Sbjct: 62  EVDRTKLDYVSGG-ATHQGIVAFAAAKDYSTVDDILEYAESRGEAPFVVVLDEVEDPHNL 120

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+A      GII  KR S   S  +AK+++GA+E++   R++N+   L ++   G 
Sbjct: 121 GAIIRTAECAGVHGIIIPKRRSAGLSYTVAKASAGAIEYMRVARVTNIAVTLDELKEKGV 180

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G   D     E +      A+++G EGKG+    +E    +A L M G I +LN S 
Sbjct: 181 WVYGADMDGTDYDECDFSG-ACAIVIGNEGKGISRLVREKCDVIASLPMKGQINSLNASV 239

Query: 268 AAAVALY 274
           AA + +Y
Sbjct: 240 AAGILMY 246


>gi|257081390|ref|ZP_05575751.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|256989420|gb|EEU76722.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
          Length = 285

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 18/237 (7%)

Query: 50  FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           F++G H TV A       K+F Q  A    + +L   A      PVK VP   +D +   
Sbjct: 46  FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             VHQG+ L        TL+ +         +   ++LD + DPHN G+ILR+A A   D
Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217
           GII  K  +   +  + K+++GA+EHIP  R++NL  +   L++   W F T     D +
Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMYGMDYR 223

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   Q      IALI+G EG+G+     +    +  + M G +++LN   AA + +Y
Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276


>gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987283|pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
          Length = 253

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 112/239 (46%), Gaps = 22/239 (9%)

Query: 51  LYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIV 105
           +YG+H V A L   P R  ++F L   ++   RL     LP  H    + V  Q  ++  
Sbjct: 15  IYGIHAVQALLERAPERFQEVFILKGREDK--RL-----LPLIHALESQGVVIQLANRQY 67

Query: 106 GKE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             E    AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA 
Sbjct: 68  LDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSAD 127

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S   +A   K A GA E +P IR++NL    + +       +G + +
Sbjct: 128 AAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTXRXLQEENIWIVGTAGE 187

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L Q     ++AL+ GAEG+G R  T+E    +  +   G + +LNVS A  + L+
Sbjct: 188 ADHTLYQSKXTGRLALVXGAEGEGXRRLTREHCDELISIPXAGSVSSLNVSVATGICLF 246


>gi|294784858|ref|ZP_06750146.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           3_1_27]
 gi|294486572|gb|EFG33934.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           3_1_27]
          Length = 234

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 86/146 (58%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A ++  L+++LD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++
Sbjct: 83  AEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++NL+D + K+    +   G + ++     +E  ++KI L+LG EG G+R K +E 
Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSNKIILVLGNEGSGIRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A+ + L
Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228


>gi|241760483|ref|ZP_04758576.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
           SK114]
 gi|241318987|gb|EER55489.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
           SK114]
          Length = 249

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L       +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGNSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|261380701|ref|ZP_05985274.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
           NJ9703]
 gi|284796412|gb|EFC51759.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
           NJ9703]
          Length = 249

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L       +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|183600321|ref|ZP_02961814.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
 gi|188020111|gb|EDU58151.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
          Length = 249

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFP-----VKTVPPQTID 102
            +YG+H V A L+  + +  ++   K    R      +P  H        V+    Q +D
Sbjct: 4   IIYGIHAVKALLDRDASRFKEVYILKGREDR----RLMPIIHEIESLGIVVQVANRQWMD 59

Query: 103 KIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + AVHQG+  +  P         P      ++  L+VLD V DPHN+GA LRSA A
Sbjct: 60  AQT-EGAVHQGIIAKVLPGKQYQEGDLPDFLESTDTPFLLVLDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A   K A GA E +P  R++NL   L+ +  +    +G + ++
Sbjct: 119 AGVHAVIVPKDKSAQLNATAKKVACGAAESVPLFRVTNLARTLRLLKEYNVWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 DHTLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLF 236


>gi|299771793|ref|YP_003733819.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
 gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
          Length = 249

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
           + YGVH+V + L     ++  L   K     RL     L  PF   V+     +++K+ G
Sbjct: 6   YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAG 65

Query: 107 KEAVHQGL--ALETAPLLSPT-LDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  A+   P+L+   LD +       LL+ LD V DPHN+GA +R+A A    
Sbjct: 66  L-PFHQGVVAAVRPHPVLNEQDLDQILRETPDALLLALDQVTDPHNLGACIRTAAAMGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG-LSSDSKK 218
            +I  +  S S +    K A+G  E + +I+++NL   L  +  +   + IG +  +S  
Sbjct: 125 AVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESAL 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           PL++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY
Sbjct: 185 PLQKCDFSGAVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALY 240


>gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 247

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 18/240 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTI 101
           N  ++G H+V A L +   +  ++ A K    R D       D        V+ +  + +
Sbjct: 3   NELIFGFHSVEAILESEPERFVEIYALK---GRDDKRSTPIIDEARKFGISVQFMQRKAL 59

Query: 102 D-KIVGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRSA 154
           D K  G++  HQG+   ++ AP  +   LDA+    ++  L+VLD + DPHN+GA LRSA
Sbjct: 60  DSKSKGEQ--HQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSA 117

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  S   +    K A GA E +P I+++NL   L+++   G   +G + 
Sbjct: 118 DAAGVHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAG 177

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 178 ETDNHVFDASLTGPMAIVMGAEGEGMRRLTREHCDMLVKIPMAGTVSSLNVSVATGICLF 237


>gi|187478616|ref|YP_786640.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
 gi|115423202|emb|CAJ49733.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
          Length = 246

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 11/193 (5%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-LAL----ETAPLLSPTLDAVRNSQLLMVLDHVND 143
           HP PV     + +D +  +   HQG LA+    + A  +   LD +     L++LD V D
Sbjct: 53  HPVPV-----ERLDGL-ARGTRHQGVLAVADERQLAVGIDEVLDEIVGPAFLLILDGVTD 106

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GA LR+A A     +I  +  +   ++ + + A GA + +PYI ++NL   ++++ 
Sbjct: 107 PHNLGACLRTADAAGVHAVIAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTMRELK 166

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G   +G    +   +        +A ++GAEG+G+R  T+ET   + ++ M G +++L
Sbjct: 167 ERGVWLVGTDDQASHDMHAIDARQPMAWVMGAEGEGMRRLTRETCDELVNIPMLGSVESL 226

Query: 264 NVSNAAAVALYIT 276
           NVS A+AV LY T
Sbjct: 227 NVSVASAVCLYET 239


>gi|225010506|ref|ZP_03700977.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-3C]
 gi|225005335|gb|EEG43286.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-3C]
          Length = 246

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 116/234 (49%), Gaps = 9/234 (3%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++YG+  V  A+       K+F     +  L +   +           VP + +D++  +
Sbjct: 6   YIYGIRAVIEAIEAKETLDKVFIQKGLQGDLIKTLENLIRKQGLNTSYVPVEKLDRLAKQ 65

Query: 108 EAVHQGLALETAPL----LSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    +P+    L P +++V   + + L ++LD ++D  N GAI+R+A     D
Sbjct: 66  HNNHQGVVASISPIEFHELDPFVESVLETKEAPLFLLLDQLSDVRNFGAIIRTASCTGVD 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+ +   +A   K+++GA   +P I++ +L DA+  + + G Q I  +  +K  L
Sbjct: 126 GIIIQKKGTAPVTADTIKTSAGAAFQVPIIKVDHLKDAVFHLQACGIQVIAATEKAKNDL 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +       A+++G+E  G+ P   + A + A L M G I +LNVS A  V LY
Sbjct: 186 YEVSFTGPTAIVMGSEDMGITPSILKVANAQAKLPMQGPISSLNVSVACGVFLY 239


>gi|119776198|ref|YP_928938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           amazonensis SB2B]
 gi|119768698|gb|ABM01269.1| RNA methyltransferase TrmH, group 3 [Shewanella amazonensis SB2B]
          Length = 240

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 12/234 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107
           ++G+H V + L +   ++ +L L T     R+     +   + +K      +T+D+   +
Sbjct: 1   MFGIHAVESVLKHAPERVLELWLMTGRQDERVLPLLEIAQNWGIKAQQAARKTLDE-KAE 59

Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+ +   P        L   LDA   +  L++LD V DPHN+GA LR+A A    
Sbjct: 60  STQHQGIIIRVRPAKVLTENDLEALLDAT-ETPFLLILDGVTDPHNLGACLRNADAAGVH 118

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   +  ++K A GA E +P  +++NL   ++++   G    G + ++   L
Sbjct: 119 GVIVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMKRIQERGVWIAGTAGEADSTL 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+
Sbjct: 179 YEANLKGPLAIAMGAEGKGLRRLSREGCDTLISIPMAGSVSSLNVSVATGICLF 232


>gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
           salmoninarum ATCC 33209]
 gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
           salmoninarum ATCC 33209]
          Length = 336

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 14/181 (7%)

Query: 108 EAVHQGLALETAPLLSP--------TLDA-----VRNSQLLMVLDHVNDPHNIGAILRSA 154
           +AVHQGLAL+  P   P        T+D      ++NS L++ LD + DP N+GAI+RS 
Sbjct: 138 DAVHQGLALQIPPYDYPDAIDIAQETVDKFKKGYIKNSPLIVALDGITDPRNLGAIIRSV 197

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF+   +I  +R S   +A   K+++GA   +P  R  NL  AL+     G+  +GL  
Sbjct: 198 SAFAGQAVIVPERRSVGLTASAWKTSAGAAVRVPVARAGNLNRALESFKGMGYFVLGLDG 257

Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D    L    +  + + +++G+EGKGL    +E    +  + +   +++LN S A  + L
Sbjct: 258 DGDVSLPALAVAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITL 317

Query: 274 Y 274
           Y
Sbjct: 318 Y 318


>gi|29374705|ref|NP_813857.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227555729|ref|ZP_03985776.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           HH22]
 gi|29342163|gb|AAO79929.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
 gi|227175134|gb|EEI56106.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           HH22]
 gi|315573947|gb|EFU86138.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0309B]
 gi|315581898|gb|EFU94089.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0309A]
          Length = 282

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 18/237 (7%)

Query: 50  FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           F++G H TV A       K+F Q  A    + +L   A      PVK VP   +D +   
Sbjct: 43  FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 100

Query: 108 EAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             VHQG+ L        TL+ +         +   ++LD + DPHN G+ILR+A A   D
Sbjct: 101 HGVHQGMVLAITAYQYLTLEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVD 160

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217
           GII  K  +   +  + K+++GA+EHIP  R++NL  +   L++   W F T    +D +
Sbjct: 161 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 220

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   Q      IALI+G EG+G+     +    +  + M G +++LN   AA + +Y
Sbjct: 221 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 273


>gi|116493236|ref|YP_804971.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116103386|gb|ABJ68529.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 252

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 15/245 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAAL--NNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTV 96
           S  T QP+  F+ G H   A+L  ++   K+F Q     + + ++   A       ++ V
Sbjct: 4   SNETQQPD--FVIGRHPAMASLQSDHSINKVFIQEGLKSDGIGQIIAKAK-KQGLVIQRV 60

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGA 149
               +D +   +  HQG+ L  A      LD       A      +++LD + DPHN+G+
Sbjct: 61  TKSKLDTLSNGQN-HQGVVLAVASFEYAELDDIFKLAKAREEEPFILILDGIEDPHNLGS 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A A    G+I  KR +   ++ +AK+++GA+E +P +++SNL +A++++   G   
Sbjct: 120 ILRTADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVSNLVNAIKELKERGLWI 179

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G           + K   + LI+G EGKG+   T++    M  + M G I++LN S AA
Sbjct: 180 FGTDMKGTDYRRWDAKG-AVGLIIGNEGKGMARLTKDNVDEMLTIPMVGEIQSLNASVAA 238

Query: 270 AVALY 274
            + +Y
Sbjct: 239 GLLIY 243


>gi|229159265|ref|ZP_04287289.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
 gi|228624157|gb|EEK80959.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
          Length = 212

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 19  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 76

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 77  IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 136

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K        N  I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 137 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 196

Query: 270 AVALY 274
           ++ +Y
Sbjct: 197 SLLMY 201


>gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
 gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           beijerinckii NCIMB 8052]
          Length = 300

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHVNDPH 145
           +K V  + +D + G E VHQG+  +  P     +S  LD       +  +++LD V DPH
Sbjct: 105 IKEVDKRKLDSMCGGE-VHQGVIAKVTPYKYSEVSDILDLAEKRGEAPFIVILDEVEDPH 163

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A  F   GII  KR S S S  + KS+ GA+EH+   +++NL   ++++   
Sbjct: 164 NLGSIVRTAELFGVHGIILPKRRSASVSTTVYKSSVGAIEHVKIAKVTNLNSTIEELKEK 223

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G    +++   Q       A+I+G EG+G+   T E    +  + M G I +LN 
Sbjct: 224 GIWIYGADIRAEEYSYQVDFGGPCAVIIGNEGRGISKLTVEKCDKLIKIPMVGKINSLNA 283

Query: 266 SNAAAVALY 274
           S A  + +Y
Sbjct: 284 SVAGGIIMY 292


>gi|323490595|ref|ZP_08095800.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
           donghaensis MPA1U2]
 gi|323395687|gb|EGA88528.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
           donghaensis MPA1U2]
          Length = 246

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 108/191 (56%), Gaps = 13/191 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V++VP + ID +   +  HQG+A   A     +LD       A       ++LD + DPH
Sbjct: 50  VQSVPKKKIDGLT--DTNHQGIAAAVAAYNYASLDDLFDAATAKNEDPFFLILDELEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    G+I  KR +   + V+AK+++GA+EH+P +RI+NL+  + ++   
Sbjct: 108 NLGSIMRTADAIGVHGLIIPKRRAVGLTGVVAKASTGAIEHVPVVRINNLSQTVDELKKR 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G    G  +D+K+ ++    +    +A+I+G+EGKG+    +E    +  L M G + +L
Sbjct: 168 GVWIAG--TDAKESVDYRRMDAALPLAVIIGSEGKGMSRILREKCDFLYQLPMIGHVTSL 225

Query: 264 NVSNAAAVALY 274
           N S AA++ +Y
Sbjct: 226 NASVAASLLMY 236


>gi|261854979|ref|YP_003262262.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
           neapolitanus c2]
 gi|261835448|gb|ACX95215.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
           neapolitanus c2]
          Length = 268

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 14/239 (5%)

Query: 50  FLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTI-DKIV 105
           +L G H V AAL  +P R +  +        R+     L       ++  P +   D++ 
Sbjct: 12  WLSGFHAVEAALQHDPERVLSVIFEQGRQDKRVQQLRVLAESRGVSIEEAPEKVFADRVR 71

Query: 106 GKE--AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                A HQG+     P        L   LD +     L++LD V DPHN+GA LRSA A
Sbjct: 72  ADRELARHQGVLARYQPKPAGNEHDLFALLDNLDEPAFLLILDGVTDPHNLGACLRSAEA 131

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I+ K  +   +    K+ASGA E +P+I+++NL   L  + S     +G +   
Sbjct: 132 AGVHAVISPKDRAVGLTPTARKAASGAAERLPFIQVTNLARTLADLKSRQIWIVGAAGGG 191

Query: 217 KKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L E +   + +AL++G+EG+GLR  TQE    +  + M   +++LNVS AAAV L+
Sbjct: 192 MVSLYESDFAAESVALVMGSEGEGLRRLTQEGCDQLIFIPMRPPVESLNVSVAAAVCLF 250


>gi|227518063|ref|ZP_03948112.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX0104]
 gi|229550656|ref|ZP_04439381.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|257087879|ref|ZP_05582240.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257418800|ref|ZP_05595794.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|227074499|gb|EEI12462.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX0104]
 gi|229304222|gb|EEN70218.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|256995909|gb|EEU83211.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257160628|gb|EEU90588.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|315026626|gb|EFT38558.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2137]
          Length = 285

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 115/237 (48%), Gaps = 18/237 (7%)

Query: 50  FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           F++G H TV A       K+F Q  A    + +L   A      PVK VP   +D +   
Sbjct: 46  FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103

Query: 108 EAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             VHQG+ L        TL+ +         +   ++LD + DPHN G+ILR+A A   D
Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVD 163

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217
           GII  K  +   +  + K+++GA+EHIP  R++NL  +   L++   W F T    +D +
Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 223

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   Q      IALI+G EG+G+     +    +  + M G +++LN   AA + +Y
Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276


>gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 249

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 18/244 (7%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQT 100
           ++PE  + YGVH+V + L     ++  L   K     RL     L  PF   V+     +
Sbjct: 2   AKPE--YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDS 59

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD--------AVRNSQLLMVLDHVNDPHNIGAILR 152
           ++K+ G    HQG+     P   PTL+        A     LL+ LD V DPHN+GA +R
Sbjct: 60  LEKLAGL-PFHQGVVAAVRP--HPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIR 116

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG 211
           +A A     +I  +  S S +    K A+G  E + +I+++NL   L  +  +   + IG
Sbjct: 117 TAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIG 176

Query: 212 -LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +  +S  P+++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  
Sbjct: 177 TMLDESAMPIQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATG 236

Query: 271 VALY 274
           +ALY
Sbjct: 237 MALY 240


>gi|121997455|ref|YP_001002242.1| RNA methyltransferase [Halorhodospira halophila SL1]
 gi|121588860|gb|ABM61440.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Halorhodospira halophila
           SL1]
          Length = 271

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 87/141 (61%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GA +RSA A    G++  +  + + S  + K+A+GA++ IP+ +++
Sbjct: 117 LLLVLDRVQDPHNLGACMRSAAAAGAHGVVAPRDRAAALSPAVHKTAAGAVQRIPFFQVT 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   LQ++   G   +G + +++K   +      +AL+LG EG+GLR  T+E       
Sbjct: 177 NLARTLQQLRDAGVHVVGAAGEAEKSCYEVDLRGPLALVLGGEGEGLRRLTRERCDERVA 236

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG +++LNVS AA V L+
Sbjct: 237 IPMPGSMESLNVSVAAGVLLF 257


>gi|325108798|ref|YP_004269866.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
 gi|324969066|gb|ADY59844.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
          Length = 259

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 123/260 (47%), Gaps = 22/260 (8%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           HR  KK+ S +QKS         +L+G   V   L      I +LL +  A  ++  D  
Sbjct: 4   HRSGKKLLSNHQKS---------WLWGTIAVWETLQTGRWPIRELLLSDQASQQVHEDCR 54

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLD 139
                   P +    + ++++  K   HQG+     P     LD +     ++ LL++LD
Sbjct: 55  QLAEERDIPCRIESARRLEQL-SKAKDHQGILARLGPFPYAALDEILGQLTSASLLLMLD 113

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N GAI+R+A A   +G+I   R   + S+ + +S++GA+ HIP   + NL D L
Sbjct: 114 RVQDPFNFGAIVRTAAALGVEGVIIGTREQAAISSHVVRSSAGAVNHIPICEVDNLQDTL 173

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +       Q++  + +    ++      E  +  + LI+G E +G+ P   E  ++  H+
Sbjct: 174 EVCRLARCQSLAATMNGTHAVQDIRALPEFAHSPLLLIIGNEARGVAPALLERCSTTVHI 233

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + AA + ++
Sbjct: 234 PMQGAVESLNAAVAAGILMF 253


>gi|254671350|emb|CBA08779.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha153]
          Length = 250

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L       +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADTDRLNAI-S 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 185 HCVLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|215432552|ref|ZP_03430471.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           EAS054]
          Length = 197

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 6   LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 64  VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175


>gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 247

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 85/141 (60%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN+GAI+RSA AF   GII  KR +   +A + K+++GA+EH+   ++S
Sbjct: 97  FLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVS 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + ++ +   G   +G   ++ K  E+   +  +A+++G+EGKG+     +    +  
Sbjct: 157 NINNTIRGLKERGLWIVGTDVNAGKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVK 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA++ +Y
Sbjct: 217 IPMKGKINSLNASVAASILIY 237


>gi|225076451|ref|ZP_03719650.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
           NRL30031/H210]
 gi|224952130|gb|EEG33339.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
           NRL30031/H210]
          Length = 249

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L       +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLISIPMFGTVESMNVSVSAGMVLSETR 240


>gi|325982012|ref|YP_004294414.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
           AL212]
 gi|325531531|gb|ADZ26252.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
           AL212]
          Length = 246

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 19/244 (7%)

Query: 46  PENLFLYGVHTVSAAL-NNPS--RKIFQLLATKN-----ALARLDWDANLPHPFPVKTVP 97
           P   F++G H V++ L  NP+  R+IF + AT+       L +L  + N+     V +  
Sbjct: 2   PSTRFIFGFHAVTSRLRQNPNSIREIF-IDATRTDQRAQELIKLAENKNIH----VISCT 56

Query: 98  PQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
              +  + G +  HQG+            +   LD +     L+VLD + DPHN+GA LR
Sbjct: 57  GSKLTSMSGNDR-HQGVVANIDSSSNDVGIDDILDGLTEPARLLVLDGIQDPHNLGACLR 115

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
            A AF    +I  K  +   +  + K +SGA + +PYI ++NL   L+++   G    G 
Sbjct: 116 VADAFGVHAVIAPKDRAVGLTPTVYKVSSGAADTVPYISVTNLARTLKQLKEQGIWIFGT 175

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + D+   L     +  +A + G+E KGLR  T+E    +  + M G I++LNV+ +A + 
Sbjct: 176 AEDAAHDLTHFPISGSVAWVFGSEEKGLRRLTRENCDQLVRIPMQGDIESLNVAVSAGIC 235

Query: 273 LYIT 276
           L+ T
Sbjct: 236 LFET 239


>gi|182437813|ref|YP_001825532.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
           griseus XylebKG-1]
 gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
           griseus XylebKG-1]
          Length = 318

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 8/172 (4%)

Query: 111 HQGLALETAPLLSP-----TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P         T  A  N++  L++ LD V DP N+GAI+RS  AF   G++
Sbjct: 140 HQGLVLQVPPYEYAHPEDLTAAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222
             +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D +  +E  
Sbjct: 200 VPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDL 259

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E     + +++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 260 EELAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLY 311


>gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 321

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 9/181 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQL---LMVLDHVNDPHNIGAILRS 153
           +D++ G  A+HQGLAL+            L    NS L   ++ LD V DP N+GA++RS
Sbjct: 132 LDRMTGG-AMHQGLALQVPAYEYAHPEDVLTEAHNSGLPPLIVALDGVTDPRNLGAVIRS 190

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   G+I  +R S   +AV  ++++G    +P  R  NLT  L+ + S G   +GL 
Sbjct: 191 AAAFGAHGVILPQRRSAGLTAVAWRTSAGTAAKLPVARAVNLTRTLKDLKSEGLMVVGLD 250

Query: 214 SDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +DS     E E+    + +++G+EG+GL    +ET      + M G +++LN S AA + 
Sbjct: 251 ADSDITSDELELATGPLVVVVGSEGRGLSRLVRETCDQTVSIPMAGSVESLNASVAAGIV 310

Query: 273 L 273
           L
Sbjct: 311 L 311


>gi|260495230|ref|ZP_05815358.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197287|gb|EEW94806.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 234

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 82/140 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++   +++
Sbjct: 89  LVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYVNISKVT 148

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL+D + K+    +   G + ++     +E   DK+ L+LG EG G+R K +E    +  
Sbjct: 149 NLSDTINKLKKLDYWVYGAAGEANINYNEEDYPDKVVLVLGNEGSGIRKKVREHCDKLIK 208

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G I +LNVS A+ + L
Sbjct: 209 IPMYGQINSLNVSVASGILL 228


>gi|256819567|ref|YP_003140846.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           ochracea DSM 7271]
 gi|256581150|gb|ACU92285.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           ochracea DSM 7271]
          Length = 244

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 9/190 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDP 144
           PV+ VP + ++++  K   HQG+    +P+       L  ++     + L +VLDH++D 
Sbjct: 50  PVQYVPVEKLNRLTKKN--HQGVVANLSPVDYHNFEDLVISVTESGATPLFLVLDHLSDV 107

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N GAI+R+A      GII  KR S S +A   K+++GA+  +P  ++ NL DA+  +  
Sbjct: 108 RNFGAIIRTAECTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQG 167

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +  +  + + L  E      A+++GAE  G+ P   +   S A L M G I +LN
Sbjct: 168 SGIRVVAATEKTSQLLYTEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLN 227

Query: 265 VSNAAAVALY 274
           VS A AV LY
Sbjct: 228 VSVACAVFLY 237


>gi|167464999|ref|ZP_02330088.1| 23S rRNA methyltransferase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381143|ref|ZP_08055146.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154719|gb|EFX46990.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 245

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 16/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIV 105
           F+ G H+V  AL +  R I ++   +NA  +    + L     H   V+TV  + +D++ 
Sbjct: 4   FIGGKHSVLEALRS-GRTINKIWIAENA-GKQQAGSVLSEAKKHGIIVQTVDRRKLDQMA 61

Query: 106 GKEAV-HQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
             E + HQG+  + A     +++ + N          +++LD + DPHN+G+ILR+A   
Sbjct: 62  --EGIQHQGIVAQVAAYEYASVEDILNKATQKGEDPFILILDEIEDPHNLGSILRTADCT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   +A ++K+++GA+E++P  R++NL   ++++   G    G   +  
Sbjct: 120 GVHGVIIPKRRSAGLTATVSKTSAGAVEYVPVARVTNLAQTIEQLKEKGIWVAGTDVNQA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + +      IAL++G E KG+    +E    +  L M G I +LN S AA V +Y
Sbjct: 180 EDVYRSNFRMPIALVIGNENKGVGRLVKEKCDFLVKLPMHGQINSLNASVAAGVLMY 236


>gi|307266360|ref|ZP_07547898.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918596|gb|EFN48832.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 247

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 85/141 (60%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN+GAI+RSA AF   GII  KR +   +A + K+++GA+EH+   ++S
Sbjct: 97  FLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVS 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + ++ +   G   +G   ++ K  E+   +  +A+++G+EGKG+     +    +  
Sbjct: 157 NINNTIRGLKERGLWIVGTDVNAGKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVK 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA++ +Y
Sbjct: 217 IPMKGKINSLNASVAASILIY 237


>gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 280

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 89  LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 146

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 147 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 206

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 207 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 258


>gi|215447913|ref|ZP_03434665.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 296

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 105 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 162

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 163 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 222

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 223 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 274


>gi|90416564|ref|ZP_01224495.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2207]
 gi|90331763|gb|EAS46991.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2207]
          Length = 231

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 81/144 (56%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  L +VLD V DPHN+GA LRSA       ++  K  S   + V+ K A GA E +P +
Sbjct: 80  NKALFLVLDGVTDPHNLGACLRSADGAGVHAVVVPKDNSVGLTPVVQKVACGAAESVPLV 139

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++NLT  L+K+   G   +G + ++++ +        + L++GAEGKG+R  T++    
Sbjct: 140 MVTNLTRTLEKLQQAGAWVVGAAGEAEQFIYDIDLTGPLVLVMGAEGKGIRQLTRKQCDY 199

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +A L M G + +LNVS A  V L+
Sbjct: 200 LAKLPMAGEVSSLNVSVATGVCLF 223


>gi|332971600|gb|EGK10550.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella kingae
           ATCC 23330]
          Length = 248

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 13/238 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDK----I 104
            +YG H ++A L    + I +L   +N A AR      +      + V     D+     
Sbjct: 6   LIYGFHAINARLWQNPKSITELYVLENKADART---REVLEKAAAENVKLHFADQDRLNT 62

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   LD +R    L+VLD + DPHN+GA LR+A A   
Sbjct: 63  MAKGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++   G   +G        
Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKECGIWVVGTDMGGDAD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L        +A ++G EG G+R  T+E   ++  + M G ++++N+S +A + L  T+
Sbjct: 183 LFHYDIPQSVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETR 240


>gi|83644548|ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396]
 gi|83632591|gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396]
          Length = 238

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 80/138 (57%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V DPHN+GA LRSA A     +I  K  S   +A   K A GA E  P IR++NL 
Sbjct: 92  VLDGVTDPHNLGACLRSANAAGVHAVIVPKDKSAPLNAAARKVACGAAEVTPLIRVTNLA 151

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L+ + ++G   +G + ++++ L Q      +A+++GAE KG+R  T+E   S+ ++ M
Sbjct: 152 RTLKHIQTYGVWLVGAAGEAEQSLYQADLKGSVAIVMGAEDKGMRRLTRENCDSLVNIPM 211

Query: 257 PGIIKALNVSNAAAVALY 274
            G + +LNVS A  V L+
Sbjct: 212 LGEVSSLNVSVATGVCLF 229


>gi|127514216|ref|YP_001095413.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella loihica
           PV-4]
 gi|126639511|gb|ABO25154.1| RNA methyltransferase, TrmH family, group 3 [Shewanella loihica
           PV-4]
          Length = 246

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HPFPVKTVPPQTID 102
           F +G+H V A L N   ++ ++   +      D    +P       +   V+    + +D
Sbjct: 6   FTFGIHAVEALLKNSPERVIEMWVLQGR----DDQRLMPLIAMAAEYGVSVQQASRKALD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVA 156
              G    HQG+ +   P      + +        +  L++LD V DPHN+GA LR+A A
Sbjct: 62  DKAGSSQ-HQGVLVRAKPAKQLNDNDLLALLDKTETPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKALQEKGVWIVGAAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L +      IA+ +GAE KGLR  T+E+  S+A + M G + +LNVS A  + L+
Sbjct: 181 EHDLYKADLKGPIAIAMGAEDKGLRRLTRESCDSLASIPMAGSVSSLNVSVATGICLF 238


>gi|256846015|ref|ZP_05551473.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|256719574|gb|EEU33129.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
          Length = 234

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 86/146 (58%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A ++  L+++LD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++
Sbjct: 83  AEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++NL+D + K+    +   G + ++     +E  ++K+ L+LG EG G+R K +E 
Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEENYSNKVILVLGNEGSGIRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A+ + L
Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228


>gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
 gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
          Length = 376

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D++ G   +HQG+ L+  P    P  D V     + + LL+ LD V DP N+GA++RSA
Sbjct: 187 LDRMTGG-VLHQGIGLQVPPFAYEPFEDLVAAALEQTAPLLVALDGVTDPRNLGAVIRSA 245

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF  +GL +
Sbjct: 246 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACQDAGFMVVGLDA 305

Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D    L + E     + +++G+EG+GL     ET      + M   +++LN S AAAV L
Sbjct: 306 DGDTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSEVESLNASVAAAVTL 365


>gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus
           oleovorans Hxd3]
          Length = 256

 Score = 99.4 bits (246), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 11/234 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVG 106
           LYG+H V AA+    RK+  L        R      L     H  PV  +P + ++++ G
Sbjct: 10  LYGIHPVMAAITAGRRKVDTLFIASGRETRQPHQQALQAAEQHNIPVNEIPARDLEQMTG 69

Query: 107 KEAVHQGLALETA--PL--LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            + VHQG+A   +  P   L+  L AV   ++  ++V D + DPHN+GA+ R+A+     
Sbjct: 70  GK-VHQGIAARVSVYPFVPLADLLAAVPSTDTPFILVADGLTDPHNLGALARTALCAGVH 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  + S +    K+++GALE +P  R +N+   L  +   G    GL    ++ +
Sbjct: 129 GLIIPKDNAASPTPAAVKASAGALEFLPVARETNIARVLDALKDAGLWIAGLDGRGEQTI 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   +AL++G EG+G+R    +    +  +    ++ +LN S A AVA+Y
Sbjct: 189 YDSDLTGPLALVVGDEGRGIRRLVGQKCDFILSIPQTDMVHSLNASVAGAVAMY 242


>gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 310

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 24/269 (8%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKN-- 76
           A LR NH   K+ QS  ++       E   + G + V   L    P+  ++  L T    
Sbjct: 41  AHLRPNHPAAKRAQSPPRRPAKRPTDETETVLGRNPVLECLRAGVPATALYVALGTDTDE 100

Query: 77  ----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSP 124
               ++AR   D+ +     +  VP   +D++     +HQG+AL+  P        LL+ 
Sbjct: 101 RVTESVARA-ADSGIS----ILEVPRADLDRMTSNH-LHQGIALQVPPYSYAHPDDLLAT 154

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L +     LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA 
Sbjct: 155 ALGS--PPPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAA 212

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             IP  R +NLT  L+     G + IGL +     ++     D + +++G+EGKGL    
Sbjct: 213 ARIPVARATNLTRTLKDWADRGIRVIGLDAGGDTVVDDLDGADPLVVVVGSEGKGLSRLV 272

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++    +  + M G  ++LN S AA V L
Sbjct: 273 RQNCDEVVSIPMAGQAESLNASVAAGVVL 301


>gi|54310420|ref|YP_131440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photobacterium
           profundum SS9]
 gi|52783294|sp|Q6LM40|RLMB_PHOPR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|46914861|emb|CAG21638.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 245

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 24/243 (9%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI------ 101
           N  ++G+H V A L     ++ ++   K+   R D D  +P    +K +   TI      
Sbjct: 3   NDMIFGIHAVKAVLATDPVRLIEVFVLKD---RQD-DRLMPLLTELKDLGI-TIQHAGRK 57

Query: 102 ---DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
              DK   K A HQG+     P        L   L+   N  LL++LD V DPHN+GA L
Sbjct: 58  ALDDK--AKGASHQGIIARVKPAKQLNEHDLDTILEGSENP-LLLILDGVTDPHNLGACL 114

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A     +I  K  +   +A  +K A GA E +P +R++NL   ++ +   G   +G
Sbjct: 115 RNADAAGAVAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVG 174

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + ++   +        +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  +
Sbjct: 175 TAGEATHDIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGI 234

Query: 272 ALY 274
            L+
Sbjct: 235 CLF 237


>gi|317402744|gb|EFV83291.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Achromobacter
           xylosoxidans C54]
          Length = 245

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 5/171 (2%)

Query: 111 HQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+       + A  +   LD +    LL++LD V DPHN+GA LR+A A     +I  
Sbjct: 69  HQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHAVIAP 128

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  +   ++ + + A GA + +PY+ ++NL   ++ +   G   +G    +   + +   
Sbjct: 129 RDRAVGLNSTVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMHRIDA 188

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY T
Sbjct: 189 RQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYET 239


>gi|23097556|ref|NP_691022.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
 gi|22775779|dbj|BAC12057.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
          Length = 248

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+ VP   +D++  +   HQG+    A     +LD + +           ++LD + DPH
Sbjct: 50  VQKVPRSKLDQM--ELGNHQGVVAYVASYTYASLDDLFDRANERGEDPFFILLDELEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILRSA A    G+I  KR S   +A +AK+A+GA+EHIP +R++N+++ + ++   
Sbjct: 108 NLGSILRSADATGVHGVIIPKRRSVGLTATVAKTAAGAIEHIPVVRVTNMSNTIDELKER 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +G  +++ +   Q   +  I +++G EGKG+    ++       L M G + +LN 
Sbjct: 168 NVWIVGTEAEADQDYRQLDGSLPIGIVIGNEGKGMSRLVRKKCDWTVGLPMVGQVSSLNA 227

Query: 266 SNAAAVALY 274
           S A  + LY
Sbjct: 228 SVACGLLLY 236


>gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|215405628|ref|ZP_03417809.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215413500|ref|ZP_03422177.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|218755363|ref|ZP_03534159.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
 gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260198621|ref|ZP_05766112.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289555843|ref|ZP_06445053.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN R506]
 gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN V2475]
 gi|81345964|sp|P96861|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           Rv3579c/MT3685
 gi|254765083|sp|A5U8Q4|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618
 gi|1877310|emb|CAB07153.1| POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis
           H37Rv]
 gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
 gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium
           tuberculosis F11]
 gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289440475|gb|EFD22968.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 322

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300


>gi|315225077|ref|ZP_07866894.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314944760|gb|EFS96792.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 244

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 13/192 (6%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPL---------LSPTLDAVRNSQLLMVLDHVN 142
           PV+ VP + ++++  K   HQG+    +P+         +S T   V  + L +VLDH++
Sbjct: 50  PVQYVPVEKLNRLTKKN--HQGVVATLSPVDYHNFEDLVISVTESGV--TPLFLVLDHLS 105

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N GAI+R+A      GII  KR S S +A   K+++GA+  +P  ++ NL DA+  +
Sbjct: 106 DVRNFGAIIRTAECTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYL 165

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G + +  +  + + L  E      A+++GAE  G+ P   +   S A L M G I +
Sbjct: 166 QGSGIRVVAATEKTSQLLYAEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISS 225

Query: 263 LNVSNAAAVALY 274
           LNVS A AV LY
Sbjct: 226 LNVSVACAVFLY 237


>gi|52424529|ref|YP_087666.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306581|gb|AAU37081.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 245

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 11/234 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVGK 107
           +YG+H V++ L     ++ ++   K     RL       H     V+ +  QT+D     
Sbjct: 5   IYGIHAVNSFLATAPERLIEVYVLKGREDKRLQPLLKELHQLGISVQFLNRQTLDNKANG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P   L    L+ + ++    LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGIIARVQPAKELNENDLERILSNNKDPLLLVLDGVTDPHNLGACLRTADAAGVCA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL   L+ +  S     +G + ++ + L
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVVPLIRVTNLARTLRDLQQSHNIWVVGTAGEATETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 184 YQTKLIGPLALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 237


>gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224991996|ref|YP_002646685.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260202767|ref|ZP_05770258.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           K85]
 gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|254765090|sp|A1KPR5|Y3644_MYCBP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BCG_3644c
 gi|121495147|emb|CAL73633.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224775111|dbj|BAH27917.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289536663|gb|EFD41241.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
          Length = 322

 Score = 99.4 bits (246), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300


>gi|284162537|ref|YP_003401160.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           profundus DSM 5631]
 gi|284012534|gb|ADB58487.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           profundus DSM 5631]
          Length = 232

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 93/173 (53%), Gaps = 8/173 (4%)

Query: 107 KEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           KEA  +G+  E +P+    +D      +R    ++ LD V DP N+GAI+RSA  F C G
Sbjct: 54  KEA--RGVMAEISPIEYKEVDTIIDKCIREGSFILFLDSVEDPQNMGAIMRSAEFFGCAG 111

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  KR     +  +AK ++GA+ H+   R+ NL + L+K+  +G   +G   D  +PL 
Sbjct: 112 VVIPKRRCVQVNETVAKVSAGAVFHLDIARVENLANILKKLKKFGITVVGADLDG-EPLR 170

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  +A+++G E KGL    ++    +A +   G I +LN+S A A+ +Y
Sbjct: 171 NVDLSPPLAIVVGGEDKGLSKPVKKQCDFIAKIEGYGKINSLNLSVAGAIIMY 223


>gi|300934670|ref|ZP_07149926.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 316

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 99/186 (53%), Gaps = 10/186 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           V  Q +D++ G   +HQG+ L+  P        L+  T +A     +++ LD++ DP N+
Sbjct: 123 VSRQELDRMTGN-GMHQGIGLQIPPYKYTEVEDLIESTANAA-TPGMIVALDNITDPRNL 180

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA++RS  AF   G++  +R S S +AV  ++++G    +P  + +N+   L++    G+
Sbjct: 181 GAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRTLKQFQQAGY 240

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           Q +GL +     L+       + +++G+EGKGL     ET  ++  + M   +++LN S 
Sbjct: 241 QVVGLDAGGDHTLDTYDGTTPVVIVVGSEGKGLSRLVSETCDTIMSVPMAKWVESLNASV 300

Query: 268 AAAVAL 273
           AA V L
Sbjct: 301 AAGVVL 306


>gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           210]
          Length = 324

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300


>gi|219559656|ref|ZP_03538732.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 316

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300


>gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis
           H37Ra]
          Length = 316

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300


>gi|310644224|ref|YP_003948983.1| RNA methyltransferase, trmh family, group 3 [Paenibacillus polymyxa
           SC2]
 gi|309249175|gb|ADO58742.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus polymyxa
           SC2]
          Length = 248

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 23/244 (9%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK-------TVPPQ 99
           E  ++ G H+V+ AL +  R I ++    NA   L     LP     K        V  +
Sbjct: 2   EEEWIAGKHSVTEALRS-GRTINKIWIADNAQKHL----TLPITAEAKKAGIIVLQVDKR 56

Query: 100 TIDKIV-GKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            +D++V G +  HQG+  + AP        L  +  A      L++LD + DPHN+G+IL
Sbjct: 57  KLDQMVPGIQ--HQGVVAQAAPFAYAEVEDLLASARAKGEEPFLILLDEIEDPHNLGSIL 114

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      GII  KR S + +  ++K+++GA+E++P  R+SNL   + ++   G   +G
Sbjct: 115 RTADCTGAHGIIVPKRRSAAVTVTVSKTSAGAVEYVPVARVSNLGQTIDRLKEEGVWVVG 174

Query: 212 LSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               +  P+    +    +A+++G E KG+    +E    +  L M G I +LN S AA 
Sbjct: 175 TDVTATDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAG 234

Query: 271 VALY 274
           V +Y
Sbjct: 235 VVMY 238


>gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
          Length = 253

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 62  LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 119

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 120 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 179

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 180 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 231


>gi|227112377|ref|ZP_03826033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 243

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELE-----AQGIVIQVANRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           DK    +AVHQG+  +           L   LD +  +  L++LD V DPHN+GA LR+A
Sbjct: 59  DK-QADDAVHQGIVAKVKEGRKYQENDLPAMLDNL-ETPFLLILDGVTDPHNLGACLRNA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + 
Sbjct: 117 DGAGVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 177 EADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis
           AF2122/97]
 gi|81421359|sp|Q7TW55|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c
 gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis
           AF2122/97]
          Length = 402

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIMRSVAAFGGHG 188

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300


>gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. WH 5701]
 gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. WH 5701]
          Length = 547

 Score = 99.0 bits (245), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 19/255 (7%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLP 88
           ++     R  ++P +  ++G H   AAL    R I ++  T          +L  DA   
Sbjct: 165 EASGSSERFGAEPADDLVWGRHPAQAALEG-DRPIHRIWCTPELRFAPRFLQLLRDAKA- 222

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---------AVRNSQLLMVLD 139
           +   V+ V    + +I G  AVHQG+ L+ A   + TLD          +  + LLM +D
Sbjct: 223 NGVLVEEVTWARLGQISGG-AVHQGIVLQAA--AAETLDLASLIDGCSTIGEAPLLMAVD 279

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+GAI+RSA A    G++  +R +   +  +AK A+GALEH+P  R+ NL  ++
Sbjct: 280 GLTDPHNLGAIVRSAEALGAHGLVLPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSI 339

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +++   G++ +GL+ +    L +   +  + ++ G+E +GL   T++    +  + + G 
Sbjct: 340 EQLKDAGYRVVGLAEEGNVSLMEADLDGPLVVVTGSEAQGLSMLTRKHCDQLIRIPLRGA 399

Query: 260 IKALNVSNAAAVALY 274
             +LN S A A+ LY
Sbjct: 400 TPSLNASVATALLLY 414


>gi|253582715|ref|ZP_04859936.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251835585|gb|EES64125.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 235

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 82/140 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++LD + DP N GA++RSA  F   GII  +R +   +  + K+++GA+E++  ++++
Sbjct: 89  IVLILDEIQDPRNFGALIRSAEVFGVKGIIIPERNAVRINETVVKTSTGAIEYVDIVKVT 148

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+++AL K+    +   G   +  K   +E    + AL+LG+EG G+R K +E    +  
Sbjct: 149 NISEALLKLKKLDYWVYGAEGEGSKDYSKEKYPSRTALVLGSEGNGIRKKVKENCDVLIK 208

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G I +LNVS A  + L
Sbjct: 209 IPMHGKINSLNVSVAGGIIL 228


>gi|27467212|ref|NP_763849.1| putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
           ATCC 12228]
 gi|242241863|ref|ZP_04796308.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|293367907|ref|ZP_06614545.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27314754|gb|AAO03891.1|AE016744_294 putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
           ATCC 12228]
 gi|242234641|gb|EES36953.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|291317936|gb|EFE58344.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329738058|gb|EGG74279.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU045]
          Length = 255

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 56  VQTVPKSKLDFLA--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPH 113

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   
Sbjct: 114 NLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDN 173

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  + +++G+EG+G+     +       + M G + +LN 
Sbjct: 174 GFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNA 233

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 234 SVAASLMMY 242


>gi|57866117|ref|YP_187768.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|81675394|sp|Q5HRM1|TRMHL_STAEQ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|90110722|sp|Q8CTT9|TRMHL_STAES RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|57636775|gb|AAW53563.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis RP62A]
          Length = 249

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFLA--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   
Sbjct: 108 NLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  + +++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|253689806|ref|YP_003018996.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756384|gb|ACT14460.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 243

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 28/243 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELE-----AQGIVIQVANRQWL 58

Query: 102 DKIVGKEAVHQGLALETA----------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           DK    +AVHQG+  +            P L   L+    +  L++LD V DPHN+GA L
Sbjct: 59  DK-QADDAVHQGIVAKVKEGRKYQENDLPALLDNLE----TPFLLILDGVTDPHNLGACL 113

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A       +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G
Sbjct: 114 RNADGAGVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVG 173

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V
Sbjct: 174 TAGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGV 233

Query: 272 ALY 274
            L+
Sbjct: 234 CLF 236


>gi|229009601|ref|ZP_04166827.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
 gi|229053938|ref|ZP_04195372.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|229131099|ref|ZP_04260011.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|229165080|ref|ZP_04292875.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228618343|gb|EEK75373.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228652312|gb|EEL08237.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|228721356|gb|EEL72877.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|228751623|gb|EEM01423.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
          Length = 222

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 29  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLILDEIEDPHNLGS 86

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G+I  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 87  IMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 146

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K        N  I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 147 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 206

Query: 270 AVALY 274
           ++ +Y
Sbjct: 207 SLLMY 211


>gi|163938099|ref|YP_001642983.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|163860296|gb|ABY41355.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           weihenstephanensis KBAB4]
          Length = 247

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 54  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLILDEIEDPHNLGS 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G+I  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 112 IMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K        N  I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 172 AGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231

Query: 270 AVALY 274
           ++ +Y
Sbjct: 232 SLLMY 236


>gi|262276699|ref|ZP_06054495.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HIMB114]
 gi|262225137|gb|EEY75593.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HIMB114]
          Length = 233

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++ G H+V +A+ N   +I Q+L     L  ++   +LP  F   VK +    I+KI+ 
Sbjct: 4   FWIAGKHSVISAVLNKHNEIHQIL-----LQNIEHKIDLPKEFHRIVKKIEKDEINKILD 58

Query: 107 K--EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +  HQG   +     S   + +   + L++LD + D  NIGAI+R+A AF+   II 
Sbjct: 59  NYPDISHQGFFAQIERNYSNNKEELFKEKNLIMLDGLTDQRNIGAIIRTASAFNIKQIII 118

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K+   + + +L K+ASG ++ I   + SN+ +  +++    +   G   +SK   ++ +
Sbjct: 119 NKKDIVTSNLLLNKTASGGMDLINIFQTSNIINLFKELKKKDYWFYGFDGNSKTIFKKNL 178

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++K   I G+EGKGLR   ++    +  +++   + +LNVS + A AL +
Sbjct: 179 LSEKNVFIFGSEGKGLREIIKKNCDHLVRININNKVDSLNVSASVASALTV 229


>gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712]
          Length = 319

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 90/173 (52%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L++   D   +  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 139 HQGLVLQVPPYEYAHPEDLVTAAFDD-HDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGV 197

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   K+++G     P  R +NLT  L++    G   +GL++D  + + E
Sbjct: 198 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRCLEQYQKAGVTVVGLAADGDREVHE 257

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E     + +++G+EGKGL     ET   +  + MPG  ++LN   AA V LY
Sbjct: 258 LEELGGPVVIVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLY 310


>gi|332530183|ref|ZP_08406131.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332040375|gb|EGI76753.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 249

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 78/136 (57%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DPHN+GA LR A       +I  K ++   +A +AK ASGA E +PY  ++NL   
Sbjct: 106 DGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGLNATVAKVASGAAETVPYFMVTNLART 165

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L ++       IG S D+ + L Q       AL+LGAEG+G+R  T++T  ++  + M G
Sbjct: 166 LGELKERNIWCIGTSDDAPQTLYQSDLKGPTALVLGAEGEGMRQLTRKTCDALVSIPMKG 225

Query: 259 IIKALNVSNAAAVALY 274
            +++LNVS A+ V LY
Sbjct: 226 GVESLNVSVASGVCLY 241


>gi|257084050|ref|ZP_05578411.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|256992080|gb|EEU79382.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
          Length = 285

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 18/237 (7%)

Query: 50  FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           F++G H TV A       K+F Q  A    + +L   A      PVK VP   +D +   
Sbjct: 46  FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             VHQG+ L        TL+ +         +   ++LD + DPHN G+ILR+A A   D
Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217
           GII  K  +   +  + K+++GA+EHIP  R++NL  +   L++   W F T    +D +
Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSGTDYR 223

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               Q      IALI+G EG+G+     +    +  + M G +++LN   AA + +Y
Sbjct: 224 SWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276


>gi|172041345|ref|YP_001801059.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 317

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 10/186 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           V  Q +D++ G   +HQG+ L+  P        L+    D+     L++ LD++ DP N+
Sbjct: 122 VSRQELDRMTGN-GLHQGIGLQIPPYKYADVHDLIERAADSA-TPGLVVALDNITDPRNL 179

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA++RS  AF   G++  +R S S +AV  ++++G    +P  + +N+  AL++    G+
Sbjct: 180 GAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVAKATNMVRALKQFQQNGY 239

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           Q +GL +  +  L+         +++G+EGKGL     ETA ++  + M   +++LN S 
Sbjct: 240 QVVGLDAGGEHTLDTYDGTTPTVVVVGSEGKGLSRLVGETADTILSIPMADKVESLNASV 299

Query: 268 AAAVAL 273
           AA V L
Sbjct: 300 AAGVVL 305


>gi|296392882|ref|YP_003657766.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
           DSM 44985]
 gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
           DSM 44985]
          Length = 296

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 96/173 (55%), Gaps = 9/173 (5%)

Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           A HQG+ L   P        LL+   ++ R + L + LDH++DP N+GA++RSA AF   
Sbjct: 114 APHQGIGLRVRPYEYHHPEDLLTEAENSGRPA-LFVALDHISDPRNLGAVVRSAAAFGGH 172

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++   R S S +A+  ++++GA   +P  +  NL  +L++    G   +GL ++    L
Sbjct: 173 GVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLARSLKQWQERGLLLVGLDAEGDTSL 232

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +     + +AL++G+EGKGL    +E+   +  + M G +++LNVS A  V L
Sbjct: 233 DDFTGTEPLALVVGSEGKGLSRLVRESCDFVVSIPMSGQVESLNVSVATGVVL 285


>gi|50122542|ref|YP_051709.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|52783288|sp|Q6D127|RLMB_ERWCT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|49613068|emb|CAG76519.1| probable tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 244

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 22/240 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN--------ALARLDWDANLPHPFPVKTVPPQTI 101
            +YG+H V A L    ++  ++   K          +A L+          ++    Q +
Sbjct: 4   IIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVIAELE-----AQGIVIQVASRQWL 58

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           DK   ++AVHQG+  +           L   LD +     L++LD V DPHN+GA LR+A
Sbjct: 59  DK-QAEDAVHQGIVAKVKEGRKYQENDLPAMLDNL-EMPFLLILDGVTDPHNLGACLRNA 116

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                  +I  +  S   +A + K A GA E IP I ++NL   ++ +       +G + 
Sbjct: 117 DGAGVHAVIVPRDRSAQLNATVKKVACGAAETIPVISVTNLARTMRLLQERNIWIVGTAG 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 177 EADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLF 236


>gi|325265987|ref|ZP_08132673.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
           denitrificans ATCC 33394]
 gi|324982625|gb|EGC18251.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
           denitrificans ATCC 33394]
          Length = 248

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 114/236 (48%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H ++A L    + I +L   +N   A  R   +        V       +  +  
Sbjct: 6   LIYGFHAINARLWQNPKSITELYVLENKNDARTREVLEKAAAERVRVHFANADRLHAM-S 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +R    L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVIGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGDADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + +A ++G EG+G+R  T+E   ++  + M G ++++N+S +A + L  T+
Sbjct: 185 HYDIPESVAWVMGNEGEGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETR 240


>gi|302390940|ref|YP_003826760.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
           arabaticum DSM 5501]
 gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
           arabaticum DSM 5501]
          Length = 243

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           +K V  + +D +    + HQG+     P+   +LD +        +  L ++LD + DPH
Sbjct: 46  LKRVAKEKLDNLADSYS-HQGVIAFGEPIKYLSLDQLIDKAYNKTDDPLFILLDEIKDPH 104

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G+ILR+A A    G+I  KR S   ++ + K+++GA+EHIP  +++NL  A++++   
Sbjct: 105 NFGSILRTADAVGAQGVIIPKRRSVGLTSAVGKASAGAIEHIPVAQVTNLVRAMEELKEN 164

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            F   G   +++    Q+     + +++G+EG G+R   +E    +  L M G I +LN 
Sbjct: 165 RFWIAGADMEAEGFCYQQDLTGPLGIVIGSEGAGMRRLVKERCDFLIKLPMKGRINSLNA 224

Query: 266 SNAAAVALY 274
           + A AV +Y
Sbjct: 225 AVAGAVLMY 233


>gi|257064637|ref|YP_003144309.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
           20476]
 gi|256792290|gb|ACV22960.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
           20476]
          Length = 256

 Score = 99.0 bits (245), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 12/197 (6%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVR----------NSQLLMV 137
           +  PVK V  + +D    +   HQG+  E  P    ++ D V+          N+ L++V
Sbjct: 46  YNVPVKRVSRKELDA-KSERGSHQGVMAEALPFKYASMTDIVKASADHAKENNNAALVIV 104

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LDH+ D  N+GAI RSA      G+I   + S   +A   KS++GA+ H+P  +++NLT 
Sbjct: 105 LDHITDAGNLGAIARSAEVVGASGLIIPNKRSAQVTAATYKSSAGAINHLPVAQVANLTG 164

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           AL ++   GF   G S  ++  + +     KIAL++G E +G+   T E+   +  L   
Sbjct: 165 ALDRLKKAGFWVAGASEHAQHTVWEAPLYGKIALVMGNEQEGISRLTLESCDFLVKLPQA 224

Query: 258 GIIKALNVSNAAAVALY 274
           G++ +LNV+ A+   +Y
Sbjct: 225 GMVGSLNVAQASTAVMY 241


>gi|260184496|ref|ZP_05761970.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           CPHL_A]
          Length = 255

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 6   LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 64  VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175


>gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
 gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
          Length = 295

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 135/277 (48%), Gaps = 33/277 (11%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLF------------LYGVHTVSAALNNPS--RKIFQ 70
           + HR  +K+      S     P++ F            +YG HTV AAL N     +I+ 
Sbjct: 15  QRHRPKRKINPVRSHSPQIPSPQSGFDSPNQEETDTDLIYGRHTVLAALENERSLNRIWM 74

Query: 71  L--LATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--- 121
           +  L + N     L+    +  L     +  V  Q +D+I      HQG+  + +P    
Sbjct: 75  VPQLQSDNRFQKGLSTAKANGTL-----IDRVSNQRLDQI-APGTNHQGIVAQVSPYAYK 128

Query: 122 -LSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            LS  +D   A  +  ++++ + + DPHN+GAI+R++ A    G+I  +R +   ++ + 
Sbjct: 129 ELSELIDLAKAASSEPVIVMAEGLTDPHNLGAIIRTSEAIGVSGLILPQRRAVGITSTVM 188

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K A+GALE  P  R+ NL  AL+++   GF   G S+ + +PL     +  + L++G+EG
Sbjct: 189 KVAAGALETFPVARVVNLNRALEELKQAGFWIYGTSATADQPLYTVKFSGPVVLVVGSEG 248

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +GL    +++   +  + + G   +LNVS A  +ALY
Sbjct: 249 QGLTRLIEQSCDILVSIPLVGQTPSLNVSVATGMALY 285


>gi|251809948|ref|ZP_04824421.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875018|ref|ZP_06283893.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis SK135]
 gi|251806491|gb|EES59148.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296346|gb|EFA88865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis SK135]
 gi|329729435|gb|EGG65838.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU144]
 gi|329734667|gb|EGG70974.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU028]
          Length = 255

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 56  VQTVPKSKLDFLA--NAPHQGVAALVAPYEYANFDEFLQKQKKKDSYSTVIILDGLEDPH 113

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   
Sbjct: 114 NLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDN 173

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  +++         +  + +++G+EG+G+     +       + M G + +LN 
Sbjct: 174 GFWIAGTEANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNA 233

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 234 SVAASLMMY 242


>gi|258509319|ref|YP_003172070.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257149246|emb|CAR88219.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           rhamnosus GG]
 gi|259650600|dbj|BAI42762.1| rRNA methylase [Lactobacillus rhamnosus GG]
          Length = 260

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           F++G H V AAL   +     K+F     K+   +            V T P Q +D ++
Sbjct: 17  FVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD-LM 75

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+ L   P    TLD +             ++LD++ DPHN+G+ILR+A A  
Sbjct: 76  SDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADASG 135

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G + D + 
Sbjct: 136 VHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQD 195

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + + K    AL++G EGKG+ P   +   +   + M G +++LN S AA + +Y
Sbjct: 196 YRQWDAKG-STALVIGNEGKGISPGIAKLMDATIAIPMAGHVQSLNASVAAGILMY 250


>gi|262066778|ref|ZP_06026390.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379581|gb|EFE87099.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
           periodonticum ATCC 33693]
          Length = 234

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 85/146 (58%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A +N  ++++LD + DP N GAI+RSA  F  D I+  +R S   +  + K+++GA+E++
Sbjct: 83  ASKNKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++NL+D + K+    +   G + ++     +E   +KI L+LG EG G+R K +E 
Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPNKIVLVLGNEGSGIRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A+ + L
Sbjct: 203 CDKLIKIPMFGQINSLNVSVASGILL 228


>gi|218245150|ref|YP_002370521.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|257058176|ref|YP_003136064.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8802]
 gi|218165628|gb|ACK64365.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8801]
 gi|256588342|gb|ACU99228.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8802]
          Length = 292

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 19/241 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI--- 104
           N  +YG H+V AAL +  R++ ++  T     +L +DA               ID++   
Sbjct: 44  NDLIYGRHSVLAALES-DRQLNRIWITN----KLHYDARFHTLIQAAKAKGSVIDEVSIQ 98

Query: 105 ----VGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRS 153
               +     HQG+A + AP     L+       A  N  ++++ D + DP N+GAI+R+
Sbjct: 99  RLNQLTHGGNHQGVAAQVAPYAYHELETLIEQAKASSNEPVIVIADGIADPQNLGAIIRT 158

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G++  +R +   ++ + K A+GALE  P  R+ NL+ AL+ +   GF   G +
Sbjct: 159 AEALGTQGLVIPQRRAAGVTSTVIKVAAGALESFPVARVVNLSRALETLKEAGFWIYGTA 218

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   K L        I L++G+E  GL   T+     +  + + G   +LN S AAA+ L
Sbjct: 219 ATGGKSLHNMELRGPIGLVIGSEESGLSLLTERCCDQLISIPLTGKTPSLNASVAAAIVL 278

Query: 274 Y 274
           Y
Sbjct: 279 Y 279


>gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 249

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 12/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
           + YGVH+V + L     ++  L   K     RL     L  PF   V+     +++K+ G
Sbjct: 6   YYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAG 65

Query: 107 KEAVHQGL--ALETAPLLSPT-LDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  A+   P+L+   LD + +     LL+ LD V DPHN+GA +R+A A    
Sbjct: 66  L-PFHQGVVAAVRPHPVLNEQDLDQILSETPNALLLALDQVTDPHNLGACIRTAAAMGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIG-LSSDSKK 218
            +I  +  + S +    K A+G  E + +I+++NL   L  +  +   + IG +  +S  
Sbjct: 125 AVIVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESAL 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           PL++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY
Sbjct: 185 PLQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALY 240


>gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
 gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
          Length = 288

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 101/186 (54%), Gaps = 9/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVNDPHNIG 148
           VP   +D++V     HQG+ +  +     T+D      A +N     ++LD V DPHN+G
Sbjct: 96  VPKSKLDQLVDG-MNHQGVVVAASAFQYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLG 154

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I+R+A A    GII  KR +   +A +AK+++GA+EH+   R++NL  A++++   G  
Sbjct: 155 SIMRTADAIGAHGIIIPKRRAVGLTATVAKASTGAIEHVAVARVTNLVQAIKELKERGLW 214

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G   + +   + E     I L++G EGKG+    +E    M  + M G +++LN S A
Sbjct: 215 LYGTDMEGQDYRQWET-TLPIGLVMGNEGKGISRLVKEQMDGMITIPMTGHVQSLNASVA 273

Query: 269 AAVALY 274
           A++ +Y
Sbjct: 274 ASLLMY 279


>gi|212633586|ref|YP_002310111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           piezotolerans WP3]
 gi|212555070|gb|ACJ27524.1| RNA methyltransferase TrmH, group 3 [Shewanella piezotolerans WP3]
          Length = 247

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 30/242 (12%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ------------ 99
           +G+H V A L N   ++ ++   +    R D         P+  +  Q            
Sbjct: 8   FGLHAVEAVLQNSPERVIEIWVLQG---RDD-----KRLIPILEIASQWGVSVQYASRKA 59

Query: 100 TIDKIVGKEAVHQGLA--LETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             DK  G +  HQG+   ++ A +L+       LD    +  L++LD V DPHN+GA LR
Sbjct: 60  LDDKSAGGQ--HQGVVAKVKAAKILNDNDLHAMLDGTE-TPFLLILDGVTDPHNLGACLR 116

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  K  S   + V++K A GA E +P  +++NL   ++ +   G    G 
Sbjct: 117 NADAAGVQGIIVPKDNSVGLTPVVSKVACGAAEIVPLYQVTNLARTMRSLQDKGIWIAGA 176

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++   + Q      +A+ +GAEGKGLR  T+E+  S+  + M G + +LNVS A  + 
Sbjct: 177 AGEADSDVYQASLTGPLAIAMGAEGKGLRRLTRESCDSLISIPMAGSVSSLNVSVATGIC 236

Query: 273 LY 274
           L+
Sbjct: 237 LF 238


>gi|254422841|ref|ZP_05036559.1| RNA methyltransferase, TrmH family, group 3, putative
           [Synechococcus sp. PCC 7335]
 gi|196190330|gb|EDX85294.1| RNA methyltransferase, TrmH family, group 3, putative
           [Synechococcus sp. PCC 7335]
          Length = 365

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 25/261 (9%)

Query: 34  QSFNQK---SRHTSQPENL---FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           QSF++    SR  S  E+     +YG H V AA+    R + +L       A+L +D++ 
Sbjct: 76  QSFSRDHLDSRFESIDEDTSPDLIYGRHAVEAAIE-AGRSLNRLWVN----AKLHYDSHF 130

Query: 88  PHPFPVKTVPPQTIDKI-------VGKEAVHQGLALETAPL----LSPTLDAVRNSQ--- 133
                        +D++       + + A HQG+  + +      L   +   +N     
Sbjct: 131 RPLIATAKANGSVVDEVENVRLSQMTQGASHQGIVAQVSAYEYVDLEVLVQQAKNKARRP 190

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++  D + DPHN+GAI+RSA A    GI+  +R +   ++ +AK ++GALE+IP  R+ 
Sbjct: 191 VIVAADGITDPHNLGAIIRSAEAIGAQGIVIPQRRAVGVTSTVAKVSAGALENIPIARVI 250

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  AL+ + S  F   GL++++ + +     +  + L++GAEG GL    Q     +  
Sbjct: 251 NLGRALEYLKSNSFWIYGLTAEAAQSIHTTDFSAPVVLVVGAEGSGLSLSVQNLCDQLVS 310

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G   +LN S A  +ALY
Sbjct: 311 IELSGKTPSLNASVATGMALY 331


>gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
          Length = 380

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 10/172 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 300


>gi|313639754|gb|EFS04505.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
           S4-171]
          Length = 190

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 104/184 (56%), Gaps = 15/184 (8%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRS 153
           I+K+V    VHQG+A + A      LD + N+          ++LD + DPHN+G+I+R+
Sbjct: 1   IEKVV--SGVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMRT 58

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWGFQTI 210
           A +    GII  KR +   +  +AK+++GA+E++P +R++N+    + LQK   W F T 
Sbjct: 59  ADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTD 118

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              S   + ++ ++    +A+++G+EG G+    +E    + HL M G + +LN S AA+
Sbjct: 119 AKGSSDYRTMDVDM---PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAAS 175

Query: 271 VALY 274
           + LY
Sbjct: 176 LLLY 179


>gi|319399720|gb|EFV87969.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus epidermidis FRI909]
          Length = 249

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           V+TVP   +D +    A HQG+A   AP      D     Q        +++LD + DPH
Sbjct: 50  VQTVPKSKLDFLA--NAPHQGVAALVAPYEYANFDEFLQKQKKKDRYSTVIILDGLEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A   D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   
Sbjct: 108 NLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDS 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G  + +         +  + +++G+EG+G+     +       + M G + +LN 
Sbjct: 168 GFWIAGTEASNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNA 227

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 228 SVAASLMMY 236


>gi|171910482|ref|ZP_02925952.1| RNA methyltransferase, TrmH family protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 193

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 77/141 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD + DPHN+GA LR+A A  CD ++  K  +   S  + + A G  E++P  R++
Sbjct: 39  LVLVLDCIQDPHNLGACLRTADAAGCDLVVMPKDKTAPISDTVIRVACGGAENVPIARVT 98

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  A+ K+   G   +G   + K+ +        I +++GAEG+G+R  T E    +  
Sbjct: 99  NLARAMDKLKDLGVWFVGTEDEGKQSIYDVDLKGPIGIVMGAEGEGMRRLTGERCDFLVK 158

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +  LNVS A  V L+
Sbjct: 159 IPMTGQVPCLNVSVATGVCLF 179


>gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium
           praevalens DSM 2228]
          Length = 246

 Score = 98.6 bits (244), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 8/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143
            P+  +  Q +++     A HQG+  E   L S  L+ V           L+++LD + D
Sbjct: 46  IPISRISSQKLNESAQSHA-HQGVIAEADALESYQLEDVIEIKAQKDGDSLVVILDEIKD 104

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN GAI+R+A A   D ++  +R +   + V+ K+A+GA EH+P +++SN+  A++ + 
Sbjct: 105 PHNFGAIIRTAYAAGADAVVYQERRAVGITPVVLKAAAGAAEHLPLVQVSNINYAIRDLK 164

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F   G  + + +   +      I L++G+EG GLR   +E    +  + M G + +L
Sbjct: 165 EANFWIAGADAAADQTHFEADFGGSIGLVIGSEGSGLRRLVRENCDFLVKIPMSGKLGSL 224

Query: 264 NVSNAAAVALY 274
           N S AA+V +Y
Sbjct: 225 NASVAASVIIY 235


>gi|325144276|gb|EGC66581.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240013]
          Length = 250

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG     +  
Sbjct: 123 HAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
 gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
          Length = 312

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 102/191 (53%), Gaps = 9/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVND 143
            PV  VP + +D + G   +HQG+ L+  P     +   +  VR+   + + +VLD++ D
Sbjct: 113 IPVHEVPRRDLDNMTGN-TLHQGIGLKIQPYKYADVFDLIGGVRDRGETGMFVVLDNITD 171

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++RSA AF   G+I  +R S   + V  ++++G    +P  R +NLT  +++  
Sbjct: 172 PRNLGAVIRSAAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVARATNLTRTIKEFK 231

Query: 204 SWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G+  +GL +  +  L+  +   D + +++G+EGKG+    +E    +  +     +++
Sbjct: 232 DNGYMVVGLDAGGEHTLDTFDGATDPVVIVVGSEGKGISRLVRENCDVIMSIPTADWVES 291

Query: 263 LNVSNAAAVAL 273
           LN S AA V L
Sbjct: 292 LNASVAAGVVL 302


>gi|312144265|ref|YP_003995711.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
           'sapolanicus']
 gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
           'sapolanicus']
          Length = 246

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+  E   L    ++ + N         L ++LD + DPHN GAI+R+A A   D ++
Sbjct: 65  HQGIIAEADHLKEYNINDIINIKDEKPGDSLTIILDEIKDPHNFGAIIRTAYAAGADAVV 124

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
              R +   + V+ K+A+GA EHIP +++SN+  A++ +    F  +G  +  ++   + 
Sbjct: 125 YQDRRAVDITPVVLKAAAGAAEHIPLVKVSNINYAIKALKDAHFWVVGADAAGEQSHFEA 184

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   AL++G+EG GLR   +E    +  + M G + +LN S AAAV +Y
Sbjct: 185 DFSGSTALVIGSEGSGLRRLVRENCDFLVKIPMKGELGSLNASVAAAVIIY 235


>gi|315186657|gb|EFU20416.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           thermophila DSM 6578]
          Length = 241

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           +    Q + + VG    H+G ALE         L       + + LL+ LDH+ DPHN+G
Sbjct: 51  EVCSAQELSRYVGT---HRGFALEVLRTFKEATLEDLCGQAQENALLVALDHLQDPHNVG 107

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA  F   G+I  +R +  ++A ++KS+SGA   +P +  +NL  AL  +   GF 
Sbjct: 108 AILRSADQFGALGVIIPERRAVKDAASISKSSSGADAFVPVVVETNLRRALLHVKKAGFW 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G   +  +P+ +   + ++ L+LGAEGKGL    +E    +  +   G + + NVS A
Sbjct: 168 VYGADMEG-QPVHEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAVPAHGHVDSFNVSVA 226

Query: 269 AAVALY 274
           A + +Y
Sbjct: 227 AGILMY 232


>gi|313680591|ref|YP_004058330.1| RNA methyltransferase, trmh family, group 3 [Oceanithermus
           profundus DSM 14977]
 gi|313153306|gb|ADR37157.1| RNA methyltransferase, TrmH family, group 3 [Oceanithermus
           profundus DSM 14977]
          Length = 237

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 120/234 (51%), Gaps = 13/234 (5%)

Query: 49  LFLYGVHTV-SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +++YG + V  AA     R++      +    +   DA +P+    + VP   +D++V +
Sbjct: 1   MWIYGRNPVLEAAREGGVRRVLVARGVERKFLKKLEDAGIPY----ELVPRIELDQLV-R 55

Query: 108 EAVHQGLALETAPLLSPTLDA-VRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+  E   +     DA +R +       L+++LD + DP N GAILRSA A    
Sbjct: 56  TTHHQGIVAEIEAIRLAEPDAPLRLAHKRGELPLVVLLDGITDPRNYGAILRSAEALGAH 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+++  R S   S V  K+++GA  H+P +++ NL   ++++   G    GL+ + +  L
Sbjct: 116 GVVSETRRSAPLSPVAVKASAGAARHLPVVQVPNLPRYIEELKEAGVWVYGLAGEGEVAL 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E+      +A ++G+EG GLR   ++    + H+ + G   +LN + AA +A++
Sbjct: 176 EEADYERPLAWVIGSEGSGLRRLVRDRCDQLVHIPLRGRTPSLNAAVAAGIAVH 229


>gi|87120578|ref|ZP_01076472.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
           MED121]
 gi|86164221|gb|EAQ65492.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
           MED121]
          Length = 270

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 19/241 (7%)

Query: 50  FLYGVHTVSAALNNPSRKI----FQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDK 103
           ++YG+H V   L     +I    FQ       + RL    NL     +K   V  + ID+
Sbjct: 22  WVYGIHAVENLLLQQPERIKEIRFQEGRDDKKIKRL---LNLCRENGIKANVVARREIDQ 78

Query: 104 IVG---KEAVHQGLAL-------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +     +  VHQG+A        +    L   ++ +    L+++LD + DPHN+GA LRS
Sbjct: 79  LFKASQERVVHQGVAAFAKMTRSQDEADLYKLVENLDEPPLIIILDGITDPHNLGACLRS 138

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     ++  K  S   +A ++K A GA E +P   ++NL   ++K+   G    G +
Sbjct: 139 ADAAGAHALVMPKDKSAPLNATVSKVACGAAESMPVYAVTNLARTMKKLQDKGVWIFGTA 198

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ + + ++      A+++GAEG G+R  T+E    +  L M G++ +LNVS A  + L
Sbjct: 199 GEASQTIYEQDLTIPSAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGICL 258

Query: 274 Y 274
           Y
Sbjct: 259 Y 259


>gi|325962200|ref|YP_004240106.1| rRNA methylase, , group 3 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468287|gb|ADX71972.1| rRNA methylase, putative, group 3 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 329

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 102/191 (53%), Gaps = 15/191 (7%)

Query: 107 KEAVHQGLALETAP--------LLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRS 153
           ++AVHQGL L+  P        L   T+       V N+ L + LD + DP N+GAI+RS
Sbjct: 139 EDAVHQGLVLQIPPYDYQDAYELAEETVAKWKKGHVANAPLFVALDGITDPRNLGAIIRS 198

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             AFS  G+I  +R S   +A   K+++GA   +P  R SNL +AL++  + G   +GL 
Sbjct: 199 VSAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPVARASNLNNALKQFKNMGIFVLGLD 258

Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            D    L +  +  + + +++G+EGKGL    +E    +  + +   +++LN S A  ++
Sbjct: 259 GDGDVSLPDLTLATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGIS 318

Query: 273 LY-ITQNHFAK 282
           LY I++   AK
Sbjct: 319 LYEISRQRAAK 329


>gi|90414465|ref|ZP_01222441.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90324470|gb|EAS41029.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 245

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 18/240 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-------PFPVKTVPPQT 100
           N  ++G+H V A L     ++ ++   K+   R D D  +P           ++    + 
Sbjct: 3   NDMIFGIHAVKAVLATDPVRLIEVFVLKD---RQD-DRLMPLLTELKDLGITIQQAGRKA 58

Query: 101 IDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSA 154
           +D    K A HQG+     P   L    LDA+       LL++LD V DPHN+GA LR+A
Sbjct: 59  LDD-KAKGASHQGIIARVKPAKQLNEHDLDAILEGSENPLLLILDGVTDPHNLGACLRNA 117

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  +   +A  +K A GA E +P +R++NL   ++ +   G   +G + 
Sbjct: 118 DAAGAAAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAG 177

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   +        +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+
Sbjct: 178 EATHDIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLF 237


>gi|212637935|ref|YP_002314455.1| rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559415|gb|ACJ32470.1| rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 246

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 106/192 (55%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V+ VP + +D++   +  HQG+  + A      +D +         +   ++LD + DPH
Sbjct: 49  VQYVPKKKMDQL--SDGNHQGVIAQVAAYRYYDIDDLFKKAEEQGEAPFFIILDELEDPH 106

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202
           N+G+I+R+A A    GII  KR S S +A +AK+++GA+E++P  R++NL    D L++ 
Sbjct: 107 NLGSIMRTADAVGAHGIIIPKRRSVSLTATVAKASTGAIEYVPVARVTNLARTVDELKER 166

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W F T    +   + L+  I    +AL++G+EGKG+    ++    +  L M G + +
Sbjct: 167 GVWIFGTDAKGTQDYRQLDGVI---PLALVIGSEGKGISRLLRDKCDVLVRLPMIGHVTS 223

Query: 263 LNVSNAAAVALY 274
           LN S AA++ +Y
Sbjct: 224 LNASVAASLLMY 235


>gi|229552882|ref|ZP_04441607.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258540508|ref|YP_003175007.1| TrmH family group 3 RNA methyltransferase [Lactobacillus rhamnosus
           Lc 705]
 gi|229313751|gb|EEN79724.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257152184|emb|CAR91156.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           rhamnosus Lc 705]
          Length = 260

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           F++G H V AAL   +     K+F     K+   +            V T P Q +D ++
Sbjct: 17  FVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD-LM 75

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+ L   P    TLD +             ++LD++ DPHN+G+ILR+A A  
Sbjct: 76  SDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADASG 135

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G + D + 
Sbjct: 136 VHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQD 195

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + + K    AL++G EGKG+ P   +   +   + M G +++LN S AA + +Y
Sbjct: 196 YRQWDAKG-STALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMY 250


>gi|319638169|ref|ZP_07992932.1| RNA methylase [Neisseria mucosa C102]
 gi|317400442|gb|EFV81100.1| RNA methylase [Neisseria mucosa C102]
          Length = 249

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L       +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|254302088|ref|ZP_04969446.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322280|gb|EDK87530.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 234

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 84/146 (57%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A ++  L+++LD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++
Sbjct: 83  AGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++NL+D + K+    +   G   ++     +E   +K+ L+LG EG G+R K +E 
Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAVGEANINYNEEDYPNKVVLVLGNEGSGIRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A+ + L
Sbjct: 203 CDKLVKIPMYGQINSLNVSVASGILL 228


>gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314]
 gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
           efficiens YS-314]
 gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
           efficiens YS-314]
          Length = 313

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 132/278 (47%), Gaps = 25/278 (8%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75
           +H  KL R  R         +K RH  +   L + G + V   L+   PS  ++      
Sbjct: 48  AHKRKLERQRR---------EKGRHQREQTELVV-GRNPVLECLHARVPSTALYVAEGAA 97

Query: 76  NALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DA 128
           N   RL     L      PV  V    +D++ G   +HQG+ L   P     +     DA
Sbjct: 98  ND-ERLSESVRLAADRSIPVLEVNKLELDRMTGN-GMHQGIGLAIPPFEYADIHDLLADA 155

Query: 129 VRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            ++ +  + ++LD++ DP N+GA++RS  AF  +G+I  +R S S +AV  ++++G    
Sbjct: 156 AQSPKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAAR 215

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  + +N+T  +++    G+Q +GL +     L+     D + +++G+EGKG+    +E
Sbjct: 216 VPVAKETNMTRTIKEFQKNGYQVVGLDAGGDHTLDTYDGTDNVVIVVGSEGKGISRLVRE 275

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
              ++  +     +++LN S AA V L  +  Q   A+
Sbjct: 276 NCDTIMSIPTEPWVESLNASVAAGVVLSEFARQRRLAQ 313


>gi|261417588|ref|YP_003251270.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC61]
 gi|297528463|ref|YP_003669738.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           C56-T3]
 gi|319765246|ref|YP_004130747.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC52]
 gi|261374045|gb|ACX76788.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC61]
 gi|297251715|gb|ADI25161.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           C56-T3]
 gi|317110112|gb|ADU92604.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC52]
          Length = 246

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V+ VP + +D++   E  HQG+  + A      +D +         +   ++LD + DPH
Sbjct: 49  VQYVPKRKLDQMA--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPH 106

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R+A A    G+I  KR S   +  +AK+++GA+EH+P  R++NL   + ++   
Sbjct: 107 NLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKER 166

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  + ++           +AL++G+EGKG+     E    +  L M G + +LN 
Sbjct: 167 GVWVAGTDASAQDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNA 226

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 227 SVAASLLMY 235


>gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
           40736]
 gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
           40736]
          Length = 311

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P        L+       +  L++ LD V DP N+GA++RS  AF   G++
Sbjct: 133 HQGLVLQVPPYEYAHPEDLAAAAADEGDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVV 192

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQ 222
             +R +   +A   K+++GA    P  R +NLT AL+     G   +GL++D +  L + 
Sbjct: 193 VPERRAAGMTAGAWKTSAGAAARTPVARATNLTRALEAYKKAGIVVVGLAADGEAELGDL 252

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E     +A+++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 253 EALGGPVAIVVGSEGKGLSRLVGETCDYRVRIPMPGGTESLNAGVAAGIVLY 304


>gi|302870247|ref|YP_003838884.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
           aurantiaca ATCC 27029]
 gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
           aurantiaca ATCC 27029]
          Length = 371

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 8/180 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D++ G   +HQG+ L+  P      D +      + + LL+ LD V DP N+GA++RSA
Sbjct: 182 LDRMTGG-VLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGAVIRSA 240

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF  +GL +
Sbjct: 241 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVVVGLDA 300

Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  L + E     + +++G+EG+GL     ET      + M   +++LN S AAAV L
Sbjct: 301 DGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTL 360


>gi|326693586|ref|ZP_08230591.1| tRNA/rRNA methyltransferase [Leuconostoc argentinum KCTC 3773]
          Length = 253

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ L  A     T+D +       + +   ++LD + DPHN+G+ILR+A A    GII
Sbjct: 75  HQGVVLSVAAFTYATIDDLFARAEERQEAPFFLILDGIEDPHNLGSILRTADAAGVHGII 134

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +A +AK ++GA+E++P  R++NL + + ++   G    G     +     +
Sbjct: 135 IPKRRAVQLTATVAKISTGAIEYVPVARVTNLVNTVNELKDRGVWIFGTDMAGEDYRRWD 194

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K    AL++G EGKG+ P  ++    M  + M G +++LN S AA++ +Y
Sbjct: 195 AKG-ATALVIGNEGKGISPLLKKKVDGMLTIPMVGHVQSLNASVAASLLIY 244


>gi|56418622|ref|YP_145940.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378464|dbj|BAD74372.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 245

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 99/189 (52%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V+ VP + +D++   E  HQG+  + A      +D +         +   ++LD + DPH
Sbjct: 48  VQYVPKRKLDQMA--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPH 105

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R+A A    G+I  KR S   +  +AK+++GA+EH+P  R++NL   + ++   
Sbjct: 106 NLGAIMRTADAVGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKER 165

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  + ++           +AL++G+EGKG+     E    +  L M G + +LN 
Sbjct: 166 GVWVAGTDASAQDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNA 225

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 226 SVAASLLMY 234


>gi|188995957|ref|YP_001930208.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188931024|gb|ACD65654.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 250

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++   ++++LDH+ DP N+G+ILR+A  F   G+I  K  S   + V+ K+++GA+ H+P
Sbjct: 93  IKEKGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVVKASTGAVFHLP 152

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             ++ +L + ++K    G   + +    +   E +     IALI+G+EGKG+     E A
Sbjct: 153 IAKVGSLRNVIEKFKKKGGWVVAIEKGGRNIAEIDFPYP-IALIVGSEGKGVSKSILEEA 211

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +A + M G I +LNVSNA ++AL+
Sbjct: 212 DIIATIPMVGKITSLNVSNATSIALW 237


>gi|218768017|ref|YP_002342529.1| putative RNA methylase [Neisseria meningitidis Z2491]
 gi|52783328|sp|Q9JUU8|RLMB_NEIMA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|121052025|emb|CAM08334.1| putative RNA methylase [Neisseria meningitidis Z2491]
          Length = 250

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|119962649|ref|YP_946696.1| TrmH family RNA methyltransferase , group 3 [Arthrobacter aurescens
           TC1]
 gi|119949508|gb|ABM08419.1| putative RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           aurescens TC1]
          Length = 330

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 14/182 (7%)

Query: 107 KEAVHQGLALETAP--------LLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRS 153
           ++AVHQGL L+  P        L   TL       + N+ + + LD + DP N+GAI+RS
Sbjct: 140 EDAVHQGLVLQIPPYEYEDAYDLAEETLAKWKKGHISNAPIFVALDGITDPRNLGAIIRS 199

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             AFS  G+I  +R S   +A   K+++GA   +P  R +NL +AL++  + G   +GL 
Sbjct: 200 VSAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPVARAANLNNALKQFKNMGIYVLGLD 259

Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            D    L +  +  + + +++G+EGKGL    +E    +  + +   +++LN S A  ++
Sbjct: 260 GDGDVSLPDLTVATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGIS 319

Query: 273 LY 274
           LY
Sbjct: 320 LY 321


>gi|34496604|ref|NP_900819.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|52783300|sp|Q7NYX3|RLMB_CHRVO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|34102459|gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 248

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 50  FLYGVHTVSAAL-NNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H ++A L  NP   I   LA    +A A+   D        +  V  + +D + G
Sbjct: 6   LIHGFHAINARLWQNPKSLIEIWLAGGRHDARAKAVLDKAGAENVKLHIVDKERLDSMSG 65

Query: 107 KEAVHQGL-ALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+ A+  A +    L   L+ +    LL++LD V DPHN+GA LR A A     
Sbjct: 66  N-ARHQGVVAMIDASMNYVDLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S + +A ++K A GA E +PYI ++NL   L+ +   G    G + ++   L 
Sbjct: 125 VIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               +  +A ++GAEG+G+R  T+E    +  + M G +++LNVS ++ + L
Sbjct: 185 HFDASGPLAWVMGAEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVL 236


>gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris
           AB-18-032]
          Length = 373

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 8/180 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D++ G   +HQG+ L+  P    P  D V     +++ LL+ LD V DP N+GA++RSA
Sbjct: 184 LDRMTGG-VLHQGVGLQVPPFAYEPFEDLVAAALEQSAPLLVALDGVTDPRNLGAVIRSA 242

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF  +GL +
Sbjct: 243 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACRDAGFMVVGLDA 302

Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  L + E     + +++G+EG+GL     +T      + M   +++LN S AAAV L
Sbjct: 303 DGETDLYDLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVSIPMVSEVESLNASVAAAVTL 362


>gi|225848046|ref|YP_002728209.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643892|gb|ACN98942.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 247

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 102/187 (54%), Gaps = 7/187 (3%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNI 147
           V+ VP Q ++++ G +   QG+    +P+     D      ++   +L+VLDH+ DP N+
Sbjct: 53  VQKVPRQKVEELAGTKKT-QGVVALLSPIQYWNEDKIIDKVIKEKGILLVLDHITDPQNV 111

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+I+R+A      GII  K  S   + V+ K+++GA+ ++P  ++ +L + L+K    G 
Sbjct: 112 GSIMRTAEILGVSGIILPKERSSPINEVVVKASTGAVFYLPIAKVGSLRNTLEKFKKKGG 171

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             + +    K   E +     +AL++G+EGKG+     E A  +A + M G I + NVSN
Sbjct: 172 WVVAVEKGGKNIHEIDFPFP-LALVVGSEGKGVSKSVLEEADIVASIPMKGKITSFNVSN 230

Query: 268 AAAVALY 274
           A A+AL+
Sbjct: 231 ATAIALW 237


>gi|220930680|ref|YP_002507589.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
 gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
          Length = 315

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 85/141 (60%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD ++DPHN GAILR+A A    G+I  KR +   ++ +AK+++GA+E++P  R++
Sbjct: 167 FIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVAKASAGAVEYVPVSRVT 226

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N++  ++ +       +G  S  +K   +      IAL++G+EG+G+    +E    + +
Sbjct: 227 NISQTIEYLKKNNVWVVGTDSTGEKAFYESDLKGPIALVVGSEGEGMGKLVREKCDFVVN 286

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AAA+ +Y
Sbjct: 287 IPMQGEISSLNASVAAAIVMY 307


>gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 315

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 18/182 (9%)

Query: 109 AVHQGLALETAPLLSPTLDAV---------------RNSQLLMVLDHVNDPHNIGAILRS 153
           A+HQG+AL+  P      DAV               +   L + LD + DP N+GAI+RS
Sbjct: 125 AIHQGMALQIPPY--EYKDAVQLATKAIKDFDKGYTKTQPLFLALDGITDPRNLGAIVRS 182

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  DG+I  +R S   +A   K+++GA   +P  + +NLT AL+++ + G   IGL 
Sbjct: 183 ASAFGADGVIIPERRSVGMTASAWKTSAGAAVRVPVAKCNNLTSALKEIKAAGIFVIGLD 242

Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +     L   E+    + +++G+EGKGL    +E   ++  + +   +++LN S A  ++
Sbjct: 243 AGGDMDLPNFELATGPLCIVVGSEGKGLSRLVRENCDAIVSIPIDSAMESLNASMAVGIS 302

Query: 273 LY 274
           LY
Sbjct: 303 LY 304


>gi|227529489|ref|ZP_03959538.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350574|gb|EEJ40865.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 248

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 102/189 (53%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ--LLMVLDHVNDPH 145
           +  VP   +D++   +  HQG+AL  A     T+D     A ++ +    ++LD + DPH
Sbjct: 53  ISNVPKTKLDQMSDHQN-HQGVALAVAAYHYATIDDLFENAAKHDEDPFFLILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  +R +   ++V+AK+++GA+EH+P  R++NL    Q++   
Sbjct: 112 NLGSIIRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAQELKDR 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G             K   +AL++G EGKG+    ++    M  + M G +++LN 
Sbjct: 172 GVWLFGTDMKGTDYRRWNAKG-AVALVIGNEGKGISSLLKKNCDEMLTIPMIGHVQSLNA 230

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 231 SVAASLLIY 239


>gi|323705643|ref|ZP_08117217.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535120|gb|EGB24897.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 248

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 127/243 (52%), Gaps = 20/243 (8%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPP 98
           + EN+ +YG + V  A+N   R+I ++  +K+A   +        D N+     V T   
Sbjct: 3   ENENI-IYGRNPVLEAIN-SGREIEKIYVSKSAKGNISKIIKSARDKNII----VSTADN 56

Query: 99  QTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAIL 151
            T+DK+ G    HQG+ AL +        D +  +        +++LD + D HN GAI+
Sbjct: 57  VTLDKMSGN-GNHQGVVALCSLYKYCDVEDILEYANEKGEKPFILLLDGITDTHNFGAII 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A AFS  GI+  KR S   ++ + K+++GA E++   ++SN+ +A+  +   G   +G
Sbjct: 116 RTAEAFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKVSNINNAINNLKKQGVWIVG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            S D+K+       +  IA+++G+EG+G+    ++    +  + M G + +LN S AA++
Sbjct: 176 SSVDAKEDFSNVDYDQPIAIVIGSEGEGISELVKKNCDYLVKIPMMGNMNSLNASVAASI 235

Query: 272 ALY 274
            +Y
Sbjct: 236 FMY 238


>gi|315503474|ref|YP_004082361.1| RNA methyltransferase, trmh family, group 3 [Micromonospora sp. L5]
 gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5]
          Length = 371

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 8/180 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D++ G   +HQG+ L+  P      D +      + + LL+ LD V DP N+GA++RSA
Sbjct: 182 LDRMTGG-VLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGAVIRSA 240

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF  +GL +
Sbjct: 241 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVVVGLDA 300

Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  L + E     + +++G+EG+GL     ET      + M   +++LN S AAAV L
Sbjct: 301 DGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVAAAVTL 360


>gi|161869843|ref|YP_001599012.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           meningitidis 053442]
 gi|161595396|gb|ABX73056.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           meningitidis 053442]
          Length = 234

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+A      +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 47  ISKGARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 106

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  
Sbjct: 107 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESD 166

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D+ A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 167 LYHCNLPDRAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 224


>gi|121634735|ref|YP_974980.1| putative RNA methylase [Neisseria meningitidis FAM18]
 gi|120866441|emb|CAM10187.1| putative RNA methylase [Neisseria meningitidis FAM18]
 gi|254672232|emb|CBA05193.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha275]
 gi|325130080|gb|EGC52867.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           OX99.30304]
 gi|325132185|gb|EGC54881.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M6190]
 gi|325134100|gb|EGC56753.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M13399]
 gi|325136132|gb|EGC58741.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M0579]
 gi|325138117|gb|EGC60690.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           ES14902]
 gi|325142210|gb|EGC64631.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           961-5945]
 gi|325198165|gb|ADY93621.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           G2136]
 gi|325206236|gb|ADZ01689.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M04-240196]
 gi|325207967|gb|ADZ03419.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           NZ-05/33]
          Length = 250

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG        
Sbjct: 123 HAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNAD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|296131814|ref|YP_003639061.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
 gi|296030392|gb|ADG81160.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
          Length = 244

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 104/191 (54%), Gaps = 9/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVND 143
            PV+    +++DK+V  +  HQG +AL      +   D ++ +Q       +++LD + D
Sbjct: 45  IPVQEADKRSLDKLV--QGNHQGVIALVAMKAYADIDDILKTAQEKGEDPFILLLDELED 102

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A A    G++  +R +   +  + K+++GA+E++   R++NL   ++ + 
Sbjct: 103 PHNLGAIIRTADAVGIHGVVIPRRRAVGITPAVVKASAGAVEYVSVCRVTNLAQTIEYLK 162

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G   +G  + + + L Q      +AL++G+EGKG+    +E    +  L M G I +L
Sbjct: 163 EKGCWVVGADAAAPQNLWQADLQGPLALVIGSEGKGISRLVREKCDFLVRLPMQGKIGSL 222

Query: 264 NVSNAAAVALY 274
           N S AAAV  Y
Sbjct: 223 NASVAAAVLCY 233


>gi|298345950|ref|YP_003718637.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304390347|ref|ZP_07372300.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315657555|ref|ZP_07910437.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236011|gb|ADI67143.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304326103|gb|EFL93348.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492027|gb|EFU81636.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 325

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 102/190 (53%), Gaps = 14/190 (7%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPL-LSPTLD----AVRNSQ-------LLMVLDHVNDPH 145
           P  +D+I      HQG+A E A    +  +D    AV  ++       LL+VLD V DPH
Sbjct: 130 PADLDRITAG-GTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPNHPPLLIVLDQVTDPH 188

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA LRSA AF  DG+I  +  S S +A + K ++GA   +P  +  NLT ALQ++ + 
Sbjct: 189 NLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARNLTHALQQLQAE 248

Query: 206 GFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   IGL       L + ++ +  + ++ G+EGKG+    +ET   +  + +   +++LN
Sbjct: 249 GAFAIGLDGGGDVDLPDLKLADQPLVVVTGSEGKGISRLVRETCDQIVSIPIDKRMESLN 308

Query: 265 VSNAAAVALY 274
            + A  +ALY
Sbjct: 309 AAVATGIALY 318


>gi|220911631|ref|YP_002486940.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           chlorophenolicus A6]
 gi|219858509|gb|ACL38851.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           chlorophenolicus A6]
          Length = 329

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 15/190 (7%)

Query: 108 EAVHQGLALETAP--------LLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSA 154
           +AVHQGL L+  P        L   T++      + N+ L + LD + DP N+GAI+RS 
Sbjct: 140 DAVHQGLVLQIPPYDYADAYELAEETVEKWKKGHISNAPLFVALDGITDPRNLGAIIRSV 199

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AFS  G+I  +R S   +A   K+++GA   +P  R SNL  AL++  + G   +GL  
Sbjct: 200 SAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPVARASNLNSALKQFKNMGIFVLGLDG 259

Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D    L +  +  + + +++G+EGKGL    +E    +  + +   +++LN S A  + L
Sbjct: 260 DGDVSLPDLSLATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITL 319

Query: 274 Y-ITQNHFAK 282
           Y +++   AK
Sbjct: 320 YEVSRQRAAK 329


>gi|215429080|ref|ZP_03426999.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
          Length = 298

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 10/170 (5%)

Query: 110 VHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +HQG+AL+  P        LL+  LD  +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 131 LHQGIALQVPPYNYAHPDDLLAAALD--QPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 188

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 248

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V
Sbjct: 249 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVFIPMAAQAESLNASVAAGV 298


>gi|160947201|ref|ZP_02094368.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
 gi|158446335|gb|EDP23330.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
          Length = 254

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 114/241 (47%), Gaps = 33/241 (13%)

Query: 63  NPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKE------------- 108
           N S  IF     +NA L  L+ D  +   + +K     +I+KI+GK              
Sbjct: 9   NMSDYIF----GRNAVLEALESDRKVEKIYILKGDLKGSINKIIGKAKANGILISEIDKH 64

Query: 109 --------AVHQGLALETAPLLSPTLDAV------RNSQL-LMVLDHVNDPHNIGAILRS 153
                    VHQG+    +     T++ +      +N  L L++LD + DPHN GAI+R+
Sbjct: 65  KLENMAEGVVHQGVCALISSFEYSTVEEILQSAKDKNEDLFLVILDEIEDPHNFGAIIRT 124

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             A    GII +KR     ++++ KS++GA+ HI   +++N+ D + K+        G  
Sbjct: 125 CEAVGVHGIIVSKRNQAPVTSIVQKSSAGAVNHIKIAKVANIADTILKLQKENVWVYGAC 184

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +++K          IA+++G EGKG+    ++    +  L M G + +LN SNA A+ +
Sbjct: 185 GEAEKIYTDMDFKGNIAIVIGNEGKGIGQLIRKRCDFLTKLPMKGKVSSLNASNACAILV 244

Query: 274 Y 274
           Y
Sbjct: 245 Y 245


>gi|307274059|ref|ZP_07555269.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0855]
 gi|306509367|gb|EFM78427.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0855]
          Length = 285

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 18/237 (7%)

Query: 50  FLYGVH-TVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           F++G H TV A       K+F Q  A    + +L   A      PVK VP   +D +   
Sbjct: 46  FVFGFHATVEALQQGRGNKLFLQEDARGEKIEQLKQAAK-EQAVPVKWVPKAKLDTM-SD 103

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             VHQG+ L        TL+ +         +   ++LD + DPHN G+ILR+A A   D
Sbjct: 104 HGVHQGMVLAITAYQYLTLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVD 163

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSK 217
           GII  K  +   +  + K+++GA+EHIP  R++ L  +   L++   W F T    +D +
Sbjct: 164 GIIIPKHRAVGITPTVTKASTGAVEHIPVARVTKLAQSIATLKENQFWIFGTDMSGTDYR 223

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   Q      IALI+G EG+G+     +    +  + M G +++LN   AA + +Y
Sbjct: 224 RWNTQ----GAIALIIGNEGRGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMY 276


>gi|237743868|ref|ZP_04574349.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229432899|gb|EEO43111.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 234

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 85/146 (58%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A ++  L+++LD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++
Sbjct: 83  AGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++NL+D + K+    +   G + ++     +E   +K+ L+LG EG G+R K +E 
Sbjct: 143 NISKVTNLSDTINKLKKLDYWIYGAAGEANINYNEEDYPNKVILVLGNEGSGIRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A+ + L
Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228


>gi|15676825|ref|NP_273970.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|52783329|sp|Q9JZR3|RLMB_NEIMB RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|7226169|gb|AAF41338.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|319410266|emb|CBY90607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Neisseria meningitidis WUE
           2594]
 gi|325200383|gb|ADY95838.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           H44/76]
          Length = 250

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|153952842|ref|YP_001393607.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|146345723|gb|EDK32259.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
          Length = 280

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 22/254 (8%)

Query: 41  RHTSQPENL---------FLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANL 87
           RH ++ ENL          + G ++V  ALN+ +  I Q+         ++  +   A  
Sbjct: 17  RHKNKIENLKSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGSINTIFAIAKE 76

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDH 140
            H   VK V  + +D+I  +  VHQG+  +  P     L+ + +       S  +++LD 
Sbjct: 77  KH-IVVKKVDKRKLDRI-SQTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDE 134

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DPHN GAI+R+A      GII  KR +   +  + KS++GA+E++   +++NL   ++
Sbjct: 135 IQDPHNFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIE 194

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K+        G     +        N  IALI+G+EGKG+   T++    +  + M G I
Sbjct: 195 KLKKENIWIYGADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNI 254

Query: 261 KALNVSNAAAVALY 274
            +LN S AA + +Y
Sbjct: 255 SSLNASVAAGMLMY 268


>gi|300869384|ref|ZP_07113971.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300332611|emb|CBN59169.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 362

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 131/258 (50%), Gaps = 25/258 (9%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------- 87
            ++ + + S  E   +YG H+V AAL    R + ++  T     +L +D           
Sbjct: 92  VDETAANLSDEETELIYGRHSVQAALEK-ERTLNRIWIT----PQLRYDPRFHSLVNQAK 146

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDH 140
            +   V  V  + +D+I  + A+HQG+A + +      LS  +   +++    +L+V + 
Sbjct: 147 ANGSIVDEVDFRRLDQITDR-AIHQGIAAQVSAYDYKELSELIAHAKSASEQPVLVVAEG 205

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +NDPHN+GAI+R+A A    G++  +R +   +A + K A+GALE+ P  R+ NL+ AL+
Sbjct: 206 LNDPHNLGAIIRTAEALGSQGMVIPQRRAVGITATVRKVAAGALENFPVARVVNLSRALE 265

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHLHM 256
           ++ + GF   G ++   K +       K+A    L++G+EG GL    Q     +  + +
Sbjct: 266 ELKAAGFWIYGTAAKEGKAIHTVQFTGKLARPVVLVVGSEGDGLSLLIQRCCDELVSIPL 325

Query: 257 PGIIKALNVSNAAAVALY 274
            G   +LNVS A  +ALY
Sbjct: 326 RGNTPSLNVSVATGMALY 343


>gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402]
          Length = 258

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 1/147 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A ++S  +++LD V DPHN G+I+RSA  F  DGII  +  S     +++K ++GAL  +
Sbjct: 105 AEKDSGFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWV 164

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P++ ++NL   ++++   GF   G  +   K L       K  LI+G+EG+G+    +ET
Sbjct: 165 PFVEVTNLVRTVERLKKEGFWIYGADA-VGKALPDLTFPKKTVLIMGSEGRGMSRLVEET 223

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  +   G + +LNVS AA + LY
Sbjct: 224 CDEIVSIPTKGKLDSLNVSVAAGILLY 250


>gi|167769675|ref|ZP_02441728.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
           17241]
 gi|167668036|gb|EDS12166.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
           17241]
          Length = 256

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 104/191 (54%), Gaps = 9/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVND 143
            PVK V  + +D +      HQG+A + A     T++      A R    LL++ D + D
Sbjct: 59  VPVKRVDVRRLDTLA-NGLNHQGVAAQAAAFHYCTVEELFARAAARGEPPLLVIADSIED 117

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A A    G+I  KR     +A++ ++++GA+EH+P  R++NL   ++++ 
Sbjct: 118 PHNLGAIIRTAEAAGAHGLIIPKRGGAGLTAIVGRTSAGAVEHLPVARVTNLVSTIKELK 177

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G    G  +   +  + ++     AL++G+EG GL    +ET  ++  L M G + +L
Sbjct: 178 ARGVWIYGADASGARWDQTDLTGPS-ALVIGSEGFGLSRLVRETCDALLSLPMRGEVNSL 236

Query: 264 NVSNAAAVALY 274
           N S AA + +Y
Sbjct: 237 NASVAAGILMY 247


>gi|316985328|gb|EFV64277.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Neisseria meningitidis H44/76]
 gi|325140178|gb|EGC62705.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           CU385]
          Length = 261

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V       ++ I  K
Sbjct: 18  IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 76

Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 77  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 196

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 251


>gi|326937885|gb|AEA13781.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 247

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 54  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEELFKVAEKRNEDPFFLILDEIEDPHNLGS 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K           I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 172 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231

Query: 270 AVALY 274
           ++ +Y
Sbjct: 232 SLLMY 236


>gi|297627018|ref|YP_003688781.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922783|emb|CBL57361.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 307

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 10/195 (5%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--------RNSQLLMVLDH 140
           H   +  VP Q +DK+    AVHQG+AL+  P     +D V         N  LL+  D 
Sbjct: 107 HSLSLLQVPRQELDKLT-DGAVHQGVALQLPPYEYADIDEVATKALGRDDNHGLLVACDG 165

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DPHN+GAI+RSA AF  DG+I  +R S S +A   K+++GA   +   +++NL   L+
Sbjct: 166 ITDPHNLGAIIRSAAAFGADGVIIPERRSASLTASAWKASAGAAARLRVAKVTNLNRGLE 225

Query: 201 KMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           ++   GF   GL+ ++   +      N  + L++G+EG GL    +E    +  + +   
Sbjct: 226 RLAKAGFVIAGLAGEADTDIAGIPGVNGPLVLVVGSEGAGLSRMVREHCDVLVSIPITSE 285

Query: 260 IKALNVSNAAAVALY 274
           +++LN S A A+ALY
Sbjct: 286 VESLNASVATAIALY 300


>gi|269957727|ref|YP_003327516.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306408|gb|ACZ31958.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 327

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 95/174 (54%), Gaps = 9/174 (5%)

Query: 110 VHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+A +  P     +   LDA   S    L++ LD V DP N+GAILRSA AF   G+
Sbjct: 147 VHQGVAAQVPPYEYRDVDDLLDAAEASGRPPLIVALDGVTDPRNLGAILRSAGAFGAHGV 206

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R S   +A   K ++GA  H+P  R +NL  AL ++   G   +GL  D  + + E
Sbjct: 207 LVPERRSAGVTASAWKVSAGAAAHVPVARATNLARALGELKKAGCFVVGLDGDGDQLVGE 266

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALY 274
             +  D + +++G+EGKG+    +ET   +A + +    +++LN   A ++ALY
Sbjct: 267 LSLATDPLVVVVGSEGKGMGRLVRETCDVIASIPIDSTAVESLNAGVATSIALY 320


>gi|237742621|ref|ZP_04573102.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229430269|gb|EEO40481.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 234

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 84/146 (57%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A ++  L+++LD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++
Sbjct: 83  AEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++NL+D + K+    +   G + ++     +E   +K+  +LG EG G+R K +E 
Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPNKVVFVLGNEGSGIRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A+ + L
Sbjct: 203 CDKLIKIPMYGQINSLNVSVASGILL 228


>gi|188588931|ref|YP_001919654.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 290

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 132/278 (47%), Gaps = 25/278 (8%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTS------QPENLFLYGVHTVSAALNNPSRKIF 69
           ++S+  K R N+R  KK  + N+   + S      + E++ + G + V  AL   + +  
Sbjct: 11  RESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIII-GRNAVLEAL--KTERTI 67

Query: 70  QLLATKNALARLDWDANL------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-- 121
           + L   N+  +L+   N            +K V  + +D +    AVHQG+     P   
Sbjct: 68  ETLYISNS--KLEGSINAIISKAKDKKILIKEVDKRKLDSMCNN-AVHQGVIARVTPYEY 124

Query: 122 --LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             +S  L+  +       +++LD V DPHN+G+I+R+A  F   GII  KR S S + ++
Sbjct: 125 SEVSDILELAKKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMV 184

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            KS+ GA+EH+   R++NL   + ++   G    G    +++   Q       A+I+G E
Sbjct: 185 YKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAIIIGNE 244

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           GKG+   T +    +  + M G I +LN S A  + +Y
Sbjct: 245 GKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMY 282


>gi|325295000|ref|YP_004281514.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065448|gb|ADY73455.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 237

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 14/181 (7%)

Query: 111 HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+    +P+     +     A+  +  L+ LD + DPHN+GAI RSA AF   GI+  
Sbjct: 62  HQGIVAVISPVEPKDFEELVQRALETNGCLLFLDRIEDPHNLGAIFRSADAFGVAGIVLP 121

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  S + +  + K+++GA+ +IP+  +S+   AL+K    G   IGL S  K      I 
Sbjct: 122 KDRSATITNTVVKASTGAVFYIPFSIVSSFRLALKKFKEAGGWLIGLESGGK-----SIS 176

Query: 226 NDK----IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           N      + L+ G+EGKGL   T +       + M G + +LNVSNA A+ LY+     +
Sbjct: 177 NYSFPFPLGLVAGSEGKGLSKTTLKLLDDTVTIPMKGHVNSLNVSNAVAIGLYLVSQQQS 236

Query: 282 K 282
           K
Sbjct: 237 K 237


>gi|325202280|gb|ADY97734.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240149]
          Length = 234

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 47  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 106

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG        
Sbjct: 107 HAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNAD 166

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 167 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 224


>gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 249

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DP NIGA++RSA A   D +I  +R S    AV+AK ++GALEH P + ++
Sbjct: 96  FLLLLDELQDPQNIGALIRSANAAGVDAVIVPQRRSAPLGAVVAKISAGALEHEPVVSVT 155

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++ +   GF  +G   D K           + L++GAEGKG+    +E    +  
Sbjct: 156 NLVRTMKDLKKRGFWIVGADMDGKDLYFDADLTGPLVLVVGAEGKGVGRLVKENCDFLVR 215

Query: 254 LHMPGIIKALNVSNAAAVALY-ITQNHF 280
           + M G +++LN S A  + LY IT+   
Sbjct: 216 IPMLGQVQSLNASVAGGILLYEITRQRI 243


>gi|294783389|ref|ZP_06748713.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           1_1_41FAA]
 gi|294480267|gb|EFG28044.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           1_1_41FAA]
          Length = 234

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 85/146 (58%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A ++  ++++LD + DP N GAI+RSA  F  D I+  +R S   +  + K+++GA+E++
Sbjct: 83  ASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++NL+D + K+    +   G + ++     +E   +KI L+LG EG G+R K +E 
Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPNKIVLVLGNEGSGIRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A+ + L
Sbjct: 203 CDKLVKIPMFGQINSLNVSVASGILL 228


>gi|255066315|ref|ZP_05318170.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
           29256]
 gi|255049525|gb|EET44989.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
           29256]
          Length = 249

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|199598532|ref|ZP_03211949.1| rRNA methylase [Lactobacillus rhamnosus HN001]
 gi|199590574|gb|EDY98663.1| rRNA methylase [Lactobacillus rhamnosus HN001]
          Length = 260

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 115/236 (48%), Gaps = 13/236 (5%)

Query: 50  FLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           F++G H V AAL   +     K+F     K+   +            V T P Q +D ++
Sbjct: 17  FVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD-LM 75

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+ L   P    TLD +             ++LD++ DPHN+G+ILR+A A  
Sbjct: 76  SDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADASG 135

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G + D + 
Sbjct: 136 VHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDGQD 195

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + + K    A+++G EGKG+ P   +   +   + M G +++LN S AA + +Y
Sbjct: 196 YRQWDAKG-STAIVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMY 250


>gi|229015494|ref|ZP_04172492.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
 gi|229021703|ref|ZP_04178285.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
 gi|228739571|gb|EEL89985.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
 gi|228745781|gb|EEL95785.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
          Length = 198

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 5   PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 62

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 63  IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 122

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K           I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 123 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 182

Query: 270 AVALY 274
           ++ +Y
Sbjct: 183 SLLMY 187


>gi|268678807|ref|YP_003303238.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616838|gb|ACZ11203.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 227

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 86/161 (53%), Gaps = 2/161 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG   E  PL      A++    L++LD V D  NIGAI+RSA AF  DG+I +   + 
Sbjct: 61  HQGFIAEIEPLELTPFSAIKQGSFLVILDEVTDVGNIGAIVRSAYAFGADGLILSGMKTC 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           +  A+L  S++ A E +P   + +  D L ++   GF   G   D    +++     K A
Sbjct: 121 NLEAILRTSSAAAFE-LPIALVPSTKDMLNELKQIGFTLYGADMDGVD-VQKVTFAPKRA 178

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           LI+G+EGKGL PK +E   ++  + M     +LNVS AAA+
Sbjct: 179 LIMGSEGKGLSPKVKERLDTVVSIKMARAFDSLNVSAAAAI 219


>gi|268601172|ref|ZP_06135339.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291044000|ref|ZP_06569716.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268585303|gb|EEZ49979.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291012463|gb|EFE04452.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 255

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 68  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  
Sbjct: 128 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESD 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 188 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 245


>gi|229136938|ref|ZP_04265565.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
 gi|229194482|ref|ZP_04321285.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228588948|gb|EEK46963.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228646476|gb|EEL02683.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 198

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 5   PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 62

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 63  IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 122

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K           I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 123 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 182

Query: 270 AVALY 274
           ++ +Y
Sbjct: 183 SLLMY 187


>gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
           ATCC 35405]
          Length = 258

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 6/184 (3%)

Query: 94  KTVPPQTIDK---IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           KT+P Q  D    ++  EA +Q   +      +    A + S  +++LD V DPHN G+I
Sbjct: 70  KTLPEQLRDHRGIVLVTEAENQKKGMSVDEFFAKL--AEKGSAFVVILDSVTDPHNTGSI 127

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA  F  DGII  +  S     +++K ++GAL  +P++ ++NL   ++++   GF   
Sbjct: 128 IRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEGFWIY 187

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G  +   K L       K  LI+G EG+G+    +ET   +  +   G + +LNVS AA 
Sbjct: 188 GADAGG-KALPNLTFPKKTVLIMGNEGRGMSRLVEETCDEIVSIPTKGKLDSLNVSVAAG 246

Query: 271 VALY 274
           + LY
Sbjct: 247 ILLY 250


>gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           himastatinicus ATCC 53653]
          Length = 317

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQG+ L+  P        L +   D   +  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 139 HQGMVLQVPPYDYAHPEDLSAAAFDDGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 197

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R +   +A   K+++G     P  R +NLT AL+     G   +GL++D +  L+ 
Sbjct: 198 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTVVGLAADGETELQD 257

Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E  +  + +++G+EGKGL     ET      + MPG  ++LN   AA V LY
Sbjct: 258 LEALDGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGVVLY 310


>gi|240115499|ref|ZP_04729561.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260440690|ref|ZP_05794506.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 250

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  
Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|315654540|ref|ZP_07907446.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315491004|gb|EFU80623.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 325

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 14/190 (7%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPL-LSPTLD----AVRNSQ-------LLMVLDHVNDPH 145
           P  +D+I      HQG+A E A    +  +D    AV  ++       LL+VLD V DPH
Sbjct: 130 PADLDRITAG-GTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPSHPPLLIVLDQVTDPH 188

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA LRSA AF  DG+I  +  S S +A + K ++GA   +P  +  NLT ALQ++ + 
Sbjct: 189 NLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARNLTHALQQLQAE 248

Query: 206 GFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   IGL       L +  + +  + ++ G+EGKG+    +ET   +  + +   +++LN
Sbjct: 249 GAFAIGLDGGGDVDLPDLTLADQPLVVVTGSEGKGISRLVRETCDQIVSIPIDKRMESLN 308

Query: 265 VSNAAAVALY 274
            + A  +ALY
Sbjct: 309 AAVATGIALY 318


>gi|283458739|ref|YP_003363377.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134792|dbj|BAI65557.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 328

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 15/198 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAVR--------NSQLLMV 137
            P+  +P   +D++    +VHQG+A++  P   P      LD +            L + 
Sbjct: 122 IPMLEIPRSELDRLT-DGSVHQGVAMQIPPYKYPDATDLVLDTMERWHSGKLSTPPLFVA 180

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+GAI+RS  AFS DG+I  +R S + +A   K+++GA   IP    +NLT 
Sbjct: 181 LDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNLTR 240

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +Q+    G   IGL       L   E+ N+ + +++G+EGKGL     E    +  + +
Sbjct: 241 VIQQAKEQGIFVIGLDGGGDIELPALELANEPLCVVVGSEGKGLSRLVTENCDQIVSIPI 300

Query: 257 PGIIKALNVSNAAAVALY 274
              +++LN + A  + LY
Sbjct: 301 DSAMESLNAAMAVGITLY 318


>gi|228898845|ref|ZP_04063127.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
 gi|228905889|ref|ZP_04069786.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
 gi|228963192|ref|ZP_04124361.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228796450|gb|EEM43889.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228853704|gb|EEM98464.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
 gi|228860745|gb|EEN05123.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
          Length = 212

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 19  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 76

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 77  IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 136

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K           I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 137 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 196

Query: 270 AVALY 274
           ++ +Y
Sbjct: 197 SLLMY 201


>gi|196047744|ref|ZP_03114943.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB108]
 gi|196021422|gb|EDX60130.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB108]
          Length = 247

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 54  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKGRGLWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K           I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 172 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231

Query: 270 AVALY 274
           ++ +Y
Sbjct: 232 SLLMY 236


>gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           reducens MI-1]
          Length = 243

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 83/141 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD +NDPHN+GAI+R+A A    G+I  +R S + ++ +AK+++GA+E++P  R++
Sbjct: 96  FIIMLDEINDPHNLGAIMRTADAAGAHGVIIPQRRSVALTSTVAKASAGAVEYVPVARVT 155

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G   +G   D  +          + L++G EGKGL    +E    +  
Sbjct: 156 NLDQTIRQLKDEGLWVVGADMDGSEIYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVR 215

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L M G + +LN S AAA+ +Y
Sbjct: 216 LPMAGRVGSLNASVAAALLVY 236


>gi|319760229|ref|YP_004124167.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038943|gb|ADV33493.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
          Length = 248

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 117/235 (49%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALN-NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V + L+ NPS   +I+ L  ++N+     ++  +     ++    + ++ I  
Sbjct: 4   LVYGIHAVQSILDKNPSNILRIYILDKSRNSKLEFLFNQGVILKIKIQEKTRRWLN-IKS 62

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             ++HQG+  E   ++          +        L++LD + DPHN+GA LRSA A   
Sbjct: 63  SGSLHQGIIAEVNKVMCLKESDLLQLIQCYNKVPFLLILDGITDPHNLGACLRSADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  +  S S ++ + K +SG+ +H+ ++R++NL   L+ +  +    +G    S + 
Sbjct: 123 HMVIAPRNRSASINSTVRKVSSGSADHVAFLRVTNLLRILKLLQKYDIWIVGTVEKSDRE 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +        +AL++G+EG G+R  T+E    +  + M G   +LNVS A  + L+
Sbjct: 183 IFDAKLVGPLALVMGSEGYGMRRVTKENCNEIISIPMCGFTSSLNVSVATGICLF 237


>gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 317

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 8/177 (4%)

Query: 111 HQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P         LDA        L++ LD V DP N+GA++RS  AF   G++
Sbjct: 139 HQGLVLQVPPYEYAHPEDLLDAAAEEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVV 198

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222
             +R +   +A   K+++G     P  R +NLT AL+     G   +GL +D    ++  
Sbjct: 199 VPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAGLMVVGLDADGDTEVQNA 258

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E+ +  + ++ G+EGKGL     ET   +  + MPG  ++LN   A  V LY    H
Sbjct: 259 EVLDGPVVIVAGSEGKGLSRLVAETCDVLVRIPMPGGAESLNAGVATGVVLYEVVRH 315


>gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 313

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 10/180 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L+S   DA  +  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 135 HQGLVLQVPPYEYAHPEDLVSAAHDAGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 193

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   K+++G     P  R +NLT AL+     G   +GL++D +  + +
Sbjct: 194 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAGITVVGLAADGEAAVGD 253

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  +  + +++G+EGKGL     ET      + MPG  ++LN   AA + LY T    A
Sbjct: 254 LKALDGPVVIVVGSEGKGLSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYETARRRA 313


>gi|255327697|ref|ZP_05368763.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
           ATCC 25296]
 gi|255295371|gb|EET74722.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
           ATCC 25296]
          Length = 328

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 15/198 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDAVR--------NSQLLMV 137
            P+  +P   +D++    +VHQG+A++  P   P      LD +            L + 
Sbjct: 122 IPMLEIPRSELDRLT-DGSVHQGVAMQIPPYKYPDATDLVLDTMERWHSGKLSTPPLFVA 180

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+GAI+RS  AFS DG+I  +R S + +A   K+++GA   IP    +NLT 
Sbjct: 181 LDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKTSAGAAARIPVAMATNLTR 240

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +Q+    G   IGL       L   E+ N+ + +++G+EGKGL     E    +  + +
Sbjct: 241 VIQQAKEQGIFVIGLDGGGDIELPALELANEPLCVVVGSEGKGLSRLVTENCDQIVSIPI 300

Query: 257 PGIIKALNVSNAAAVALY 274
              +++LN + A  + LY
Sbjct: 301 DSAMESLNAAMAVGITLY 318


>gi|291294519|ref|YP_003505917.1| RNA methyltransferase TrmH family, group 3 [Meiothermus ruber DSM
           1279]
 gi|290469478|gb|ADD26897.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus ruber DSM
           1279]
          Length = 238

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 8/188 (4%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQ-LLMVLDHVNDPHN 146
           +TVP   +D++V +   HQGL  E   L    L+A       R  + LL+VLD + DP N
Sbjct: 43  QTVPRIQLDQMV-RTTQHQGLVAEITELAYADLEAPFRLAKERGERVLLVVLDGITDPRN 101

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAI+RSA A    G++T +R S   SA++ K+++G    IP +++ N+   L+++   G
Sbjct: 102 YGAIIRSAFALGAHGVVTEERRSAPLSALVMKASAGTASKIPLVQVKNIPRYLEQLKQQG 161

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G S  + K + +      +AL++G+EG+G+R    E    +A + +    ++LN +
Sbjct: 162 IWVYGTSGKASKTIAELDYQRPLALVIGSEGEGMRRLVAEHCDELARIPLSEGAESLNAA 221

Query: 267 NAAAVALY 274
            A  V LY
Sbjct: 222 VALGVVLY 229


>gi|71908582|ref|YP_286169.1| RNA methyltransferase TrmH, group 3 [Dechloromonas aromatica RCB]
 gi|71848203|gb|AAZ47699.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Dechloromonas aromatica
           RCB]
          Length = 243

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 82/153 (53%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L   LD +     L+VLD + DP N+GA LR A A     +I  K  +   + V AK+A 
Sbjct: 84  LDDVLDTLEEPAFLLVLDGITDPRNLGACLRVADAAGVHAVIAPKDRAVGLTDVAAKTAC 143

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA E +PY+ ++NL   L+++       IG + +++  L         A +LGAEG+G+R
Sbjct: 144 GAAETVPYVMVTNLARTLRELQEREIWVIGTAGEAESDLYAAEWPKATAWVLGAEGEGMR 203

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             T+E    +  + M G +++LNVS AA V L+
Sbjct: 204 RLTRENCDQLVKIPMHGTVESLNVSVAAGVCLF 236


>gi|119471828|ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119445318|gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 247

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 16/239 (6%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTI 101
           N  ++G H+V A L     +  ++ A K    R D       D        V+ +  + +
Sbjct: 3   NELIFGFHSVEAILAKEPERFLEIYALK---GRDDKRLTPIIDEARKFGISVQFMQRKAL 59

Query: 102 DKIVGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155
           D    K+  HQG+   ++ AP  +   LD +     +  L+VLD + DPHN+GA LRSA 
Sbjct: 60  DN-KSKDEQHQGIIANVKAAPTYNEKDLDVIIAREETPFLLVLDGITDPHNLGACLRSAD 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     II  K  S   +    K A GA E +P I+++NL   L+++   G   +G + +
Sbjct: 119 AAGVHAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGE 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 179 TDTHVFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGSVSSLNVSVATGICLF 237


>gi|218895227|ref|YP_002443638.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
 gi|218542507|gb|ACK94901.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
          Length = 247

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 54  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K           I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 172 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231

Query: 270 AVALY 274
           ++ +Y
Sbjct: 232 SLLMY 236


>gi|30018362|ref|NP_829993.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|206972200|ref|ZP_03233147.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           AH1134]
 gi|218232294|ref|YP_002364941.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
 gi|296500926|ref|YP_003662626.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|29893902|gb|AAP07194.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|206732774|gb|EDZ49949.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           AH1134]
 gi|218160251|gb|ACK60243.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
 gi|296321978|gb|ADH04906.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
          Length = 247

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 54  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K           I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 172 AGTDAKGKTDYRNLDGTMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231

Query: 270 AVALY 274
           ++ +Y
Sbjct: 232 SLLMY 236


>gi|256027521|ref|ZP_05441355.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289765481|ref|ZP_06524859.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289717036|gb|EFD81048.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 234

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 82/140 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD + DP N GAI+RSA  F  D II  +R S   +  + K+++GA+E++   +++
Sbjct: 89  LVLILDEIQDPRNFGAIIRSAEVFKVDLIIIPERNSVRINETVVKTSTGAIEYVNISKVT 148

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL+D + K+    +   G + ++     +E   +K+ L+LG EG G+R K +E    +  
Sbjct: 149 NLSDTINKLKKLDYWVYGAAGEASINYNEEDYANKVILVLGNEGSGIRKKVREHCDKLIK 208

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G I +LNVS A+ + L
Sbjct: 209 IPMYGQINSLNVSVASGILL 228


>gi|304387767|ref|ZP_07369947.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338243|gb|EFM04373.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
          Length = 250

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIIELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|30260282|ref|NP_842659.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|42779172|ref|NP_976419.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|47525346|ref|YP_016695.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47569826|ref|ZP_00240496.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
 gi|49183125|ref|YP_026377.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|49476710|ref|YP_034444.1| tRNA/rRNA methyltransferase SpoU [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52145126|ref|YP_081703.1| TrmH family tRNA methyltransferase [Bacillus cereus E33L]
 gi|65317552|ref|ZP_00390511.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
 gi|118475862|ref|YP_893013.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|165873145|ref|ZP_02217761.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0488]
 gi|167635112|ref|ZP_02393429.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0442]
 gi|167641947|ref|ZP_02400182.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0193]
 gi|170689565|ref|ZP_02880751.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0465]
 gi|170707589|ref|ZP_02898042.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0389]
 gi|177655588|ref|ZP_02936969.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0174]
 gi|190568999|ref|ZP_03021900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036983|ref|ZP_03104350.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
 gi|217957667|ref|YP_002336211.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
 gi|218901294|ref|YP_002449128.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
 gi|222093862|ref|YP_002527912.1| tRNA/rRNA methyltransferase (spou); trmh family [Bacillus cereus
           Q1]
 gi|225862144|ref|YP_002747522.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB102]
 gi|227812765|ref|YP_002812774.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CDC 684]
 gi|229604658|ref|YP_002864743.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0248]
 gi|254684405|ref|ZP_05148265.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724232|ref|ZP_05186017.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A1055]
 gi|254733754|ref|ZP_05191469.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Western North America USA6153]
 gi|254744606|ref|ZP_05202285.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Kruger B]
 gi|254756310|ref|ZP_05208339.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Vollum]
 gi|254758388|ref|ZP_05210415.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Australia 94]
 gi|301051829|ref|YP_003790040.1| tRNA/rRNA methyltransferase [Bacillus anthracis CI]
 gi|30253603|gb|AAP24145.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Ames]
 gi|42735087|gb|AAS39027.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus ATCC
           10987]
 gi|47500494|gb|AAT29170.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47553519|gb|EAL11900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
 gi|49177052|gb|AAT52428.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Sterne]
 gi|49328266|gb|AAT58912.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51978595|gb|AAU20145.1| tRNA/rRNA SpoU-like methyltransferase; probable TrmH family
           [Bacillus cereus E33L]
 gi|118415087|gb|ABK83506.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|164711125|gb|EDR16686.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0488]
 gi|167510078|gb|EDR85489.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0193]
 gi|167529586|gb|EDR92336.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0442]
 gi|170127585|gb|EDS96459.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0389]
 gi|170666478|gb|EDT17255.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0465]
 gi|172080052|gb|EDT65150.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0174]
 gi|190559923|gb|EDV13907.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195990406|gb|EDX54407.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
 gi|217065144|gb|ACJ79394.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
 gi|218539078|gb|ACK91476.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
 gi|221237910|gb|ACM10620.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           cereus Q1]
 gi|225787673|gb|ACO27890.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB102]
 gi|227007212|gb|ACP16955.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CDC 684]
 gi|229269066|gb|ACQ50703.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0248]
 gi|300373998|gb|ADK02902.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           cereus biovar anthracis str. CI]
 gi|324324081|gb|ADY19341.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 247

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 54  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 111

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 112 IMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K           I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 172 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 231

Query: 270 AVALY 274
           ++ +Y
Sbjct: 232 SLLMY 236


>gi|320530261|ref|ZP_08031330.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
           F0399]
 gi|320137476|gb|EFW29389.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
           F0399]
          Length = 265

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 15/252 (5%)

Query: 36  FNQKSRHTSQ----PENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPH 89
             Q++RH  +    P    L G H ++ A+    R I ++L         R   D    H
Sbjct: 1   MKQENRHIEEHSVDPPAGILAGRHAITEAIK-AGRGINRILIADGMHGGVRELRDLARAH 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHVN 142
              V  V    +D    + A H G+    AP+    +   + +VR      LL++LD + 
Sbjct: 60  DITVDIVSRAKLDA-AAEGARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIE 118

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GA+LR+A A    GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ +
Sbjct: 119 DPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRAL 178

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF   G         ++      + L++G+EG+G+   T+E       L M G I +
Sbjct: 179 KEDGFWIAGADMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINS 238

Query: 263 LNVSNAAAVALY 274
           LN S A A+ +Y
Sbjct: 239 LNASVAGAILMY 250


>gi|225873641|ref|YP_002755100.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
           capsulatum ATCC 51196]
          Length = 270

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 18/240 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-----NALARLDWDANLPHPFPVKTVPPQTIDKI 104
            LYG+H V  AL   SRK   +  ++      A  +L    +L     V+ +  +  +++
Sbjct: 3   VLYGLHPVEEALRAGSRKFDHVCVSRERQDHGAAQKLQRIVDLCRSEGVR-LRFENREQL 61

Query: 105 --VGKEAVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
             + K   HQG+         L    L++   D   +  LL+ LD V DP N+GA+LRSA
Sbjct: 62  TRMAKTHAHQGVVAVVRERSFLTIEDLMAAPADG--HPHLLLALDGVEDPQNLGALLRSA 119

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                DG++  +R S   SAV  K+++GA EHI   R+ NL  AL+++       +GL  
Sbjct: 120 DGAGVDGVLLPERRSAPLSAVAVKTSAGAAEHIRIARVVNLVRALEQLKEQNIWCVGLDE 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +         ++LG EG+GL    ++T   +  + M G + +LNVS A AV LY
Sbjct: 180 RGTMSYDAYDWTTPSVVVLGREGEGLHDLVRKTCDHLVRIPMAGGVSSLNVSAAGAVVLY 239


>gi|261363630|ref|ZP_05976513.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
           25996]
 gi|288568160|gb|EFC89720.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
           25996]
          Length = 249

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L       +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a]
 gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a]
          Length = 348

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 8/180 (4%)

Query: 101 IDKIVGKEAVHQGLALE------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           +D++ G  A HQGLAL       T P             L++ LD V DP N+GA++RSA
Sbjct: 161 LDRMCGT-APHQGLALAVPPFRYTHPDDLLARARAAAPGLVVALDGVTDPRNLGAVVRSA 219

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G++  +R +   +A   K+++GA   +P  R +NL   L      G   +GL++
Sbjct: 220 AAFGAHGVLVPERRAAGITAAAWKTSAGAAARLPVARATNLARTLVSYAEAGLFVVGLAA 279

Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D+   +++ E+  D + L++G+EG+GL    ++       + M G +++LN   AA +AL
Sbjct: 280 DADTTIDELEMATDPVVLVIGSEGRGLSRLVEQRCDVTVRIPMAGAVESLNAGVAAGIAL 339


>gi|240123348|ref|ZP_04736304.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240128052|ref|ZP_04740713.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 250

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  
Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
           E681]
          Length = 248

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 23/244 (9%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK-------TVPPQ 99
           E  ++ G H+V+ AL +  R I ++    NA   L     LP     K        V  +
Sbjct: 2   EEEWIAGKHSVTEALRS-GRTINKIWIADNAQKHL----TLPITAEAKKAGIIVLQVDKR 56

Query: 100 TIDKIV-GKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAIL 151
            +D++V G +  HQG+  + AP     +   L   R+      L++LD + DPHN+G+IL
Sbjct: 57  KLDQMVPGIQ--HQGVVAQAAPFAYVEVEELLATARDKGEEPFLILLDEIEDPHNLGSIL 114

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G+I  KR S + +  ++K+++GA+E++P  R++NL   + ++   G   +G
Sbjct: 115 RTADCTGAHGVIVPKRRSAAVTVTVSKTSAGAVEYVPVARVNNLGQTIDRLKEEGVWVVG 174

Query: 212 LSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               +  P+    +    +A+++G E KG+    +E    +  L M G I +LN S AA 
Sbjct: 175 TDVTATDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAG 234

Query: 271 VALY 274
           V +Y
Sbjct: 235 VVMY 238


>gi|298368373|ref|ZP_06979691.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282376|gb|EFI23863.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 249

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L       +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|226939564|ref|YP_002794637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
           hongkongensis HLHK9]
 gi|226714490|gb|ACO73628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
           hongkongensis HLHK9]
          Length = 252

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVP--PQTIDKIVG 106
            ++G H V+A L    + + ++  T+    R   +A        ++ +P   + +D + G
Sbjct: 6   LIHGFHAVNARLFQSPKSLIEIYITRGREDRRMQEALAKAADEGIRVIPLDNERLDAMTG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+A           +   LD +     L++LD + DPHN+GA LR A A     
Sbjct: 66  -HARHQGIAAVIDASHRIVNVDDVLDTLTTPPFLLILDGITDPHNLGACLRVADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  S   +A ++K A GA E +PYI+++NL   L+ +   G    G   D +  L 
Sbjct: 125 VLAPKDRSAGLNATVSKVACGAAETVPYIQVTNLARTLRDLKDRGIWIAGTDMDGQSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + +A ++G+EG+G+R  T+E    +  + M G +++LNVS A  + L  T+
Sbjct: 185 HFEAPESLAWVMGSEGEGMRRLTREHCDLLVSIPMFGTVESLNVSVATGMVLAETR 240


>gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
           11300]
 gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
           11300]
          Length = 246

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 14/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPH 145
           ++  P   +D++ G    HQG+  E   L   T+D +      R   LL+VL D + DP 
Sbjct: 42  LRFAPRIELDQLAGTTQ-HQGVIAEVEDLAWATVDDILDRAEARGEDLLIVLLDGITDPR 100

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQKM 202
           N GAI+RSA      G++  +R S   S V+ K+A+GA  ++P  +  NL    DAL++ 
Sbjct: 101 NFGAIIRSAEVLGAHGVVVEERRSAPLSPVVVKTAAGATSYLPVAQTKNLPRLIDALKED 160

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W +   G + ++ + + +   + K+AL++GAEG+GLR   +E   ++  +   G +++
Sbjct: 161 GVWIY---GAAGEAAQDIGRTDLSGKVALVIGAEGEGLRRLVREKCDALVRIPTRGQVQS 217

Query: 263 LNVSNAAAVALY 274
           LN S AA + LY
Sbjct: 218 LNASVAAGILLY 229


>gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 306

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 11/183 (6%)

Query: 101 IDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +D+I    A+HQG+AL+  P        LLS   D   +  LL+ LD + DP N+GAI+R
Sbjct: 118 LDRIT-DGAIHQGVALQVPPYEYAHPDDLLSLARDRAEHP-LLVALDGITDPRNLGAIVR 175

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           S  AF   G+I T+R + S +A   K+++GA   IP  ++ NL  A+  +   G   +GL
Sbjct: 176 STAAFGGHGVIITERRAASMTAAAWKTSAGAASRIPVAQVVNLARAIDDLKKSGVFVLGL 235

Query: 213 SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             +    L + E+  + + L++G+EGKGL    ++    +  + +    ++LN   AA V
Sbjct: 236 DMNGDVELPKLELAREPVCLVVGSEGKGLSRLVRDKCDQIVSIPISASTESLNAGVAAGV 295

Query: 272 ALY 274
           ALY
Sbjct: 296 ALY 298


>gi|261392720|emb|CAX50293.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Neisseria meningitidis 8013]
          Length = 250

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|237739549|ref|ZP_04570030.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423157|gb|EEO38204.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 234

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 85/146 (58%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A ++  ++++LD + DP N GAI+RSA  F  D I+  +R S   +  + K+++GA+E++
Sbjct: 83  ASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVDLILIPERNSVRINETVVKTSTGAIEYV 142

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++NL+D + K+    +   G + ++     +E   +KI L+LG EG G+R K +E 
Sbjct: 143 NISKVTNLSDTINKLKKLDYWVYGAAGEASINYNEEDYPNKIVLVLGNEGSGIRKKVREH 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + M G I +LNVS A+ + L
Sbjct: 203 CDKLIKIPMFGQINSLNVSVASGILL 228


>gi|260654702|ref|ZP_05860192.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
           E3_33 E1]
 gi|260630718|gb|EEX48912.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
           E3_33 E1]
          Length = 278

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 6/186 (3%)

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSA 154
            +D++ G  AVHQG+AL        +LD + +       L+++LD   DPHN+G+++R+A
Sbjct: 88  ALDQMTGG-AVHQGIALSLRRPDEVSLDDLLDQLAGGPALVILLDRCQDPHNLGSVIRTA 146

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     ++  K  S   +  + K+++GA    P I + N+  AL  +   GF  +GL+ 
Sbjct: 147 EAAGASAVLVPKDRSVRLTGTVVKASAGAALRFPVISVVNVKRALDDLKEAGFWVVGLAG 206

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +S +PL +   + +  L +GAEG GL   T+++   +A + M G  ++LN   AAA+  Y
Sbjct: 207 ESSEPLGKLAWDQRTVLAVGAEGTGLAELTRKSCDFLARIPMSGQAESLNAGVAAALGAY 266

Query: 275 ITQNHF 280
                F
Sbjct: 267 EWARRF 272


>gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 290

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 131/278 (47%), Gaps = 25/278 (8%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTS------QPENLFLYGVHTVSAALNNPSRKIF 69
           ++S+  K R N+R  KK  + N+   + S      + E++ + G + V  AL   + +  
Sbjct: 11  RESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIII-GRNAVLEAL--KTERTI 67

Query: 70  QLLATKNALARLDWDANL------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-- 121
           + L   N+  +L+   N            +K V  + +D +    AVHQG+     P   
Sbjct: 68  ETLYISNS--KLEGSINAIISKAKDKKILIKEVDKRKLDSMCNN-AVHQGVIARVTPYEY 124

Query: 122 --LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             +S  L+          +++LD V DPHN+G+I+R+A  F   GII  KR S S + ++
Sbjct: 125 SEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTMV 184

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            KS+ GA+EH+   R++NL   + ++   G    G    +++   Q       A+I+G E
Sbjct: 185 YKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAIIIGNE 244

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           GKG+   T +    +  + M G I +LN S A  + +Y
Sbjct: 245 GKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMY 282


>gi|116669296|ref|YP_830229.1| RNA methyltransferase [Arthrobacter sp. FB24]
 gi|116609405|gb|ABK02129.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter sp. FB24]
          Length = 328

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 15/190 (7%)

Query: 108 EAVHQGLALETAP--------LLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSA 154
           +A+HQGL L+  P        L   T+++     V N+ L + LD + DP N+GAI+RS 
Sbjct: 139 DAIHQGLVLQIPPYEYQDAYELAEETVESWKKGHVANAPLFVALDGITDPRNLGAIIRSV 198

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AFS  G+I  +R S   +A   K+++GA   +P  R +NL + L+   + G   +GL  
Sbjct: 199 SAFSGHGVIVPERRSVGVTASAWKTSAGAAVRVPVARAANLNNTLKAFKNMGIYVLGLDG 258

Query: 215 DSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D    L +  +  + + +++G+EGKGL    +E    +  + +   +++LN S A  ++L
Sbjct: 259 DGDVSLPDLSLAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISL 318

Query: 274 Y-ITQNHFAK 282
           Y I++   AK
Sbjct: 319 YEISRQRAAK 328


>gi|268681973|ref|ZP_06148835.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268686441|ref|ZP_06153303.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268622257|gb|EEZ54657.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268626725|gb|EEZ59125.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 255

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 68  ISKGARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  
Sbjct: 128 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESD 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 188 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 245


>gi|149183933|ref|ZP_01862318.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
 gi|148848356|gb|EDL62621.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
          Length = 247

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 15/192 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQ-----LLMVLDHVNDPH 145
           V+ VP Q I+ +V     HQG+  + A      +D +  R  Q       ++LD + DPH
Sbjct: 50  VQFVPKQKIEGMVRDN--HQGVVAQVAAYQYAEMDELYARAEQKGEIPFFLMLDELEDPH 107

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A A    GII  KR +   +A +AK+++GA+EHIP  R++NL    D L++ 
Sbjct: 108 NLGSIMRTADASGVHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAQTIDELKER 167

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W   T    +D  + L+  +    I L++G+EGKG+    ++    +  + M G + +
Sbjct: 168 GVWVAGTDAKGADDYRRLDGTL---PICLVIGSEGKGIGRLIRDKCDFLIKMPMVGHVTS 224

Query: 263 LNVSNAAAVALY 274
           LN S AA++ +Y
Sbjct: 225 LNASVAASILMY 236


>gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia
           dioxanivorans CB1190]
          Length = 329

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 11/187 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           VP   +D++ G  A+HQG+AL   P        LL   + + R + L+  LD V DP N+
Sbjct: 135 VPRNDLDRMAGG-ALHQGVALVVPPYEYAHPDELLEAAVGSGRPA-LIAALDGVMDPRNL 192

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA++RS  AF   G++  +R +   +AV  ++++G    +P  R +NLT  LQ+  + G 
Sbjct: 193 GAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNLTRTLQEYANTGL 252

Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              GL++D    ++  ++  D + L++G+EGKGL    +ET      + +   +++LN S
Sbjct: 253 MVAGLAADGDVSIDDFDLATDPLVLVIGSEGKGLSRLVRETCDVTVSIPLAREVESLNAS 312

Query: 267 NAAAVAL 273
            AA V L
Sbjct: 313 VAAGVVL 319


>gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 317

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L +   D   +  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 139 HQGLVLQVPPYEYAHPEDLAAAAFDDGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 197

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   K+++G     P  R +NLT AL+     G   +GL++D +  + +
Sbjct: 198 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTVVGLAADGETEVGD 257

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E     + +++G+EGKGL     ET   +  + MPG  ++LN   AA V LY
Sbjct: 258 LEALGGPLVIVVGSEGKGLSRLVGETCDYLVRIPMPGGAESLNAGVAAGVVLY 310


>gi|152964880|ref|YP_001360664.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
           radiotolerans SRS30216]
 gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
           radiotolerans SRS30216]
          Length = 321

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 10/182 (5%)

Query: 107 KEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + AVHQG+A    P        LL    D+ R + L++ LD V DP N+GA++RS  AF 
Sbjct: 140 ENAVHQGVAATVPPYDYAHPMDLLDRAADSGRPA-LVVALDGVTDPRNLGAVVRSVAAFG 198

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +R +   +A   K+++GA    P  R +NL  A+++    G   +GL ++   
Sbjct: 199 GHGVVVPERRAAGMTASAWKTSAGAAARTPVARATNLVRAIEEYQKAGLFVVGLDAEGDV 258

Query: 219 PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            L Q ++ +  + L++GAEG GL    +E    +  + M G  ++LN   AA +ALY   
Sbjct: 259 LLPQLKLADGPLVLVVGAEGAGLSRLVREKCDQVVSIPMAGAFESLNAGVAAGIALYEVA 318

Query: 278 NH 279
            H
Sbjct: 319 RH 320


>gi|169350897|ref|ZP_02867835.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
 gi|169292483|gb|EDS74616.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
          Length = 244

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 6/174 (3%)

Query: 111 HQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+  E       ++D +  S       LL++LD + DPHN+GAILR+  A   DG+I 
Sbjct: 66  HQGVMAEVEEYRYYSVDEILASIPSGKMPLLLMLDGLEDPHNLGAILRTCDAIGVDGVII 125

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K  S   +  +AK ++GA++H+   +++NLT  L+ +    F  +G   D+ +   Q  
Sbjct: 126 GKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKHSFWVVGCDLDNAQDYRQID 185

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            N  + +++G+EG G+    ++T      L M G + +LN S A AV LY   N
Sbjct: 186 YNMPLVIVIGSEGFGISRLVKKTCDFNVVLPMMGHVTSLNASVATAVILYQVYN 239


>gi|261377685|ref|ZP_05982258.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
           14685]
 gi|269145953|gb|EEZ72371.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
           14685]
          Length = 250

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|269214830|ref|ZP_05987243.2| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
           ATCC 23970]
 gi|269208890|gb|EEZ75345.1| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
           ATCC 23970]
          Length = 261

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 9/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L       +A  R   +        V       ++ I  K
Sbjct: 18  IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 76

Query: 108 EAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 77  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   ++++  +G   IG     +  L  
Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTMRELKEYGIWIIGTDMGGESDLYH 196

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 251


>gi|15896402|ref|NP_349751.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15026220|gb|AAK81091.1|AE007810_10 RRNA methylase, YACO B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325510559|gb|ADZ22195.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
          Length = 252

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 8/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVND 143
            PVK V  + +DKI     VHQG +A+ T        D + N++       ++VLD + D
Sbjct: 52  IPVKYVDRKKLDKI-SNGGVHQGVIAISTPYNYCDVDDIILNAKEKNEDPFILVLDEIED 110

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+G+I+R+A      GII  KR +   +  + K+++GA++++   ++SN+  A+ K+ 
Sbjct: 111 PHNLGSIIRTAELCGVHGIIIPKRRNVGVTPTVYKTSAGAVKYVKIAKVSNINLAIDKLK 170

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G    G   D +     +     +AL++G+EG+G+   T++    +  + M G + +L
Sbjct: 171 KEGIWVYGAEIDGENYCYNQNMTGALALVIGSEGRGISKLTKQKCDVLVKIPMVGKVNSL 230

Query: 264 NVSNAAAVALY 274
           N S AA + +Y
Sbjct: 231 NASVAAGIVMY 241


>gi|187935194|ref|YP_001884456.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B str. Eklund 17B]
 gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B str. Eklund 17B]
          Length = 286

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145
           +K V  + +D +    AVHQG+     P     +S  L+          +++LD V DPH
Sbjct: 91  IKEVDKRKLDSMCNN-AVHQGVIARVTPYEYSEVSDILELAEKKGENPFIVILDEVEDPH 149

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A  F   GII  KR S S + ++ KS+ GA+EH+   R++NL   + ++   
Sbjct: 150 NLGSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEK 209

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G    +++   Q       A+I+G EGKG+   T +    +  + M G I +LN 
Sbjct: 210 GIWVYGTDIRAEEYSYQTDFGGACAIIIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNA 269

Query: 266 SNAAAVALY 274
           S A  + +Y
Sbjct: 270 SVAGGIIMY 278


>gi|237756237|ref|ZP_04584798.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691595|gb|EEP60642.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 248

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 86/146 (58%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++   ++++LDH+ DP N+G+ILR+A  F   G+I  K  S   + V+ K+++GA+ H+P
Sbjct: 91  IKEKGIMLILDHITDPQNVGSILRTAEIFGVSGVIIPKERSSPINEVVIKASTGAVFHLP 150

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             ++ +L + ++K    G   + +    +   E +     IAL++G+EGKG+     E A
Sbjct: 151 IAKVGSLRNVIEKFKKKGGWVVAVEKGGRNIAEIDFPYP-IALVVGSEGKGVSKSILEEA 209

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +A + M G I +LNVSNA ++AL+
Sbjct: 210 DIIATIPMVGKITSLNVSNATSIALW 235


>gi|229074153|ref|ZP_04207199.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
 gi|229094814|ref|ZP_04225819.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
 gi|229100891|ref|ZP_04231695.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
 gi|229113768|ref|ZP_04243203.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228669639|gb|EEL25046.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228682470|gb|EEL36543.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
 gi|228688557|gb|EEL42430.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
 gi|228708923|gb|EEL61050.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
          Length = 212

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGA 149
           P + +D++V  E  HQG+  + A      L+ +      RN     ++LD + DPHN+G+
Sbjct: 19  PKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGS 76

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G+I  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G   
Sbjct: 77  IMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWI 136

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +  K           I L++G+EGKG+     E    +  L M G + +LN S AA
Sbjct: 137 AGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAA 196

Query: 270 AVALY 274
           ++ +Y
Sbjct: 197 SLLMY 201


>gi|270291198|ref|ZP_06197421.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
           acidilactici 7_4]
 gi|304385483|ref|ZP_07367828.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
 gi|270280594|gb|EFA26429.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
           acidilactici 7_4]
 gi|304328690|gb|EFL95911.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
          Length = 251

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 14/174 (8%)

Query: 111 HQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ L  A     +L+ V      RN    +++LD + DPHN+G+ILR+A A    G+I
Sbjct: 73  HQGVVLAVASFEYASLEQVFELAESRNEAPFVVILDGIEDPHNLGSILRTADAAGVHGVI 132

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGLSSDSKKPL 220
             KR +   ++ +AK+++GA+E +P ++++NL + L+++     W F T    +D ++  
Sbjct: 133 IPKRRAVGLTSTVAKTSAGAIERVPVVQVNNLVNTLKELKDRGLWIFGTDMAGTDYRR-- 190

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   + LI+G EGKG+   T+E    M  + M G I++LN S AA + +Y
Sbjct: 191 --WDATGPVGLIIGNEGKGMARLTKENVDEMLTIPMVGDIQSLNASVAAGLLIY 242


>gi|326802929|ref|YP_004320747.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650933|gb|AEA01116.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 253

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 126/239 (52%), Gaps = 21/239 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTID 102
            + G H V AAL++ S+KI+Q    +        A+ +   D  +P  +  K    + +D
Sbjct: 12  LVLGYHAVQAALDS-SQKIYQAYLQEGQHSKRHQAVEKGLQDRQIPISYRSK----RDLD 66

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV--RNSQL-----LMVLDHVNDPHNIGAILRSAV 155
           ++  + A HQG  LE A     ++D +  R  +L      ++LD + DPHN+G+ILR+A 
Sbjct: 67  QLT-QGANHQGFVLEVAAYQYYSVDDLFQRAKELGEDPFFILLDGIMDPHNLGSILRTAD 125

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  K  +   +  +AK ++GA+E++P  R++N+T  ++ +   G    G   +
Sbjct: 126 ACGAHGIIIPKHRAAGVTPTVAKISTGAIEYLPVARVTNMTQTIEALKEKGVWVFGTDME 185

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   + +  +  IA+++G E KG+ P+ ++    +  + M G +++LN S AAA+ +Y
Sbjct: 186 GQDYWDMD-ASLPIAVVIGNEEKGISPRVKKALDGVLTIPMRGHVQSLNASVAAALVMY 243


>gi|297572188|ref|YP_003697962.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 327

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 8/173 (4%)

Query: 110 VHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+ALE  P     ++ +           L++ LD V DPHN+GA +RSA AF  DG+
Sbjct: 141 VHQGIALEIPPYEYVDVEELVALGHDHLEPGLIVALDSVTDPHNLGAAMRSASAFRADGV 200

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R S   +A + K ++GA   +P  R +NL  AL+ + + G+  +GL       ++ 
Sbjct: 201 LIPERRSAGVNATVWKVSAGAAARVPVARETNLVRALEDLKAQGYFVVGLDGGGDATVDT 260

Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ +  + ++ G+EGKGL    ++T   +A + +   +++LN + A  +ALY
Sbjct: 261 LDMADVPLVIVTGSEGKGLSRLVRDTCDVIASIPIASDMESLNAAVATGIALY 313


>gi|293399197|ref|ZP_06643362.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
           F62]
 gi|291610611|gb|EFF39721.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
           F62]
          Length = 250

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 325

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 137/280 (48%), Gaps = 19/280 (6%)

Query: 18  SHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73
           +H  K++R  R+ ++  +     KS    +P +  + G + V+ A     P  ++F L  
Sbjct: 49  AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAARASVPIERVFVLDN 108

Query: 74  TKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALET--------APLLS 123
            K+   R++    L      PV  V  + +D +    AVHQG+A+E         + L++
Sbjct: 109 VKDD--RVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRGYEYADASDLIA 165

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            +L  +    LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +    K ++GA
Sbjct: 166 GSLQQL-GHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGA 224

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRP 242
              +P  R +NL  AL++    G+  +GL      PL    + +  + ++ GAEG GL  
Sbjct: 225 AARVPVARATNLVRALEEAKRAGYFVVGLDGGGDAPLRGLSLADGPLVVVTGAEGAGLSR 284

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +ET   +  + +   +++LN + A  +ALY   +  AK
Sbjct: 285 LVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAK 324


>gi|294139210|ref|YP_003555188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Shewanella
           violacea DSS12]
 gi|293325679|dbj|BAJ00410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shewanella
           violacea DSS12]
          Length = 251

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 21/240 (8%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDKIV 105
           +G+H V A L +   ++ +L      L R D       ++   +   V+    + +D   
Sbjct: 8   FGIHAVEAVLKHSPERVIELWVL---LGRDDKRLMPILESAAEYGVSVQYAARKVLDDKS 64

Query: 106 GKEAVHQGLALETAPL-------LSPTLD--AVRNSQ--LLMVLDHVNDPHNIGAILRSA 154
           G    HQG+      +       L+  LD   V N++   L++LD V DPHN+GA LR+A
Sbjct: 65  GG-GQHQGVLARVKAVKQLNDKDLTALLDKIEVENTETPFLLILDGVTDPHNLGACLRNA 123

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + 
Sbjct: 124 DAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVGAAG 183

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +++  L +      +A+ +GAE KGLR  T+E   S+  + M G + +LNVS A+ V L+
Sbjct: 184 EAEHNLYKADLKGSLAIAMGAEDKGLRRLTREGCDSLVSIPMTGSVSSLNVSVASGVCLF 243


>gi|213965128|ref|ZP_03393326.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           amycolatum SK46]
 gi|213952242|gb|EEB63626.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           amycolatum SK46]
          Length = 314

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 107/199 (53%), Gaps = 12/199 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVND 143
            P++ VP   +D + G   +HQG+ L+        +   +D+V  +    L++ LD++ D
Sbjct: 113 IPIREVPRHELDTMTG-NTMHQGIGLQIPSYKYSSVEDLIDSVAKTGEPGLIVCLDNITD 171

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++RS  AF   G++  +R S + + V  ++++G    +P  R +N+  +L++  
Sbjct: 172 PRNLGAVIRSVAAFGGHGVVIPERRSAAITGVAWRTSAGTAARLPVARATNMVRSLKQFQ 231

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+Q +GL +     L+       + +++G+EGKGL    ++T  ++  + M G +++L
Sbjct: 232 KAGYQIVGLDAGGDHTLDTYDGTTPVVVVVGSEGKGLSRLVRDTCDTIMSIPMTGWVESL 291

Query: 264 NVSNAAAVALYITQNHFAK 282
           N S AA V L    + FA+
Sbjct: 292 NASVAAGVTL----SEFAR 306


>gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
           odontolyticus F0309]
 gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
           odontolyticus F0309]
          Length = 325

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 134/272 (49%), Gaps = 19/272 (6%)

Query: 18  SHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73
           +H  K++R  R+ ++  +     KS    +P +  + G + V+ A     P  ++F L  
Sbjct: 49  AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAARASVPIERVFVLDN 108

Query: 74  TKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALET--------APLLS 123
            K+   R++    L      PV  V  + +D +    AVHQG+A+E         + L++
Sbjct: 109 VKDD--RVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRGYEYADASDLIA 165

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            +L  +    LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +    K ++GA
Sbjct: 166 GSLQQL-GHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGA 224

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRP 242
              +P  R +NL  AL++    G+  +GL      PL    + +  + ++ GAEG GL  
Sbjct: 225 AARVPVARATNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVVTGAEGAGLSR 284

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +ET   +  + +   +++LN + A  +ALY
Sbjct: 285 LVRETCDQIVSIPIASTVESLNAAVATGIALY 316


>gi|313896352|ref|ZP_07829905.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975151|gb|EFR40613.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 266

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 119/253 (47%), Gaps = 16/253 (6%)

Query: 36  FNQKSRHTSQ----PENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLP 88
             Q+ R+T +    P    L G H ++ A+    R I ++L       +  R   D    
Sbjct: 1   MKQEKRYTEEAPIEPPVGILAGRHAITEAIK-AGRGINRILIADGLHGSGVRELRDLARA 59

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHV 141
           H   V  V    +D    + A H G+    AP+    +   + +VR      LL++LD +
Sbjct: 60  HDITVDIVSRAKLDA-AAQGARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGI 118

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+GA+LR+A A    GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ 
Sbjct: 119 EDPHNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVTRIGNIAQTIRA 178

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF   G         ++      + L++G+EG+G+   T+E       L M G I 
Sbjct: 179 LKEDGFWIAGADMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKIN 238

Query: 262 ALNVSNAAAVALY 274
           +LN S A A+ +Y
Sbjct: 239 SLNASVAGAILMY 251


>gi|254804813|ref|YP_003083034.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668355|emb|CBA05407.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 250

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|299143771|ref|ZP_07036851.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518256|gb|EFI41995.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 226

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 109 AVHQGL-ALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           A HQG+ AL +    S   D + N    +++LD + DPHN+GAI RSA AF   GII  K
Sbjct: 51  ANHQGVVALVSGYEYSTLEDLILNGINQILILDKIEDPHNLGAIARSAEAFGFKGIIIPK 110

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             S   + V+ K+++GA++++  +  +NL+++++K+   G+   G   + ++  + ++K 
Sbjct: 111 HKSVYVNDVVYKTSAGAIDNVSVVIETNLSNSIEKLKENGYWIFGADMEGEEYFKSDLKG 170

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            KI L++G EGKGL P  ++    +  + M G I +LN S AA++ +
Sbjct: 171 -KIVLVVGNEGKGLSPAVRKHCDKIISIPMAGKINSLNASCAASILM 216


>gi|297563234|ref|YP_003682208.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847682|gb|ADH69702.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 320

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 11/175 (6%)

Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           A HQGLAL+  P        LL   L++     L++ LD V DPHN+GAI RSA AF+  
Sbjct: 137 AAHQGLALQVRPYQYRAPEALLDTALES-DTPALIVALDGVTDPHNLGAIARSAAAFNAH 195

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +R S   +    K+++G L  +P  + +NLT AL+     G   +GL +    P+
Sbjct: 196 GLLIPERRSAGVNLTAWKTSAGTLARLPVAQATNLTRALEGYKKEGVFVVGLDAGGDTPI 255

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + E+    + +++G+EGKGL    +E    +A + + G  ++LN S AA V+LY
Sbjct: 256 PDLELATGPLVIVIGSEGKGLSRLVREACDVVASIPI-GNAESLNASVAAGVSLY 309


>gi|226355334|ref|YP_002785074.1| trmH family tRNA/rRNA methyltransferase [Deinococcus deserti
           VCD115]
 gi|226317324|gb|ACO45320.1| putative trmH family tRNA/rRNA methyltransferase [Deinococcus
           deserti VCD115]
          Length = 241

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 102/189 (53%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPH 145
           V+  P   +D++ G    HQG+  E   +   ++D +      R   L++VL D + DP 
Sbjct: 47  VRFSPRIELDQLAGTTQ-HQGILAEVEDMAWASMDDIMDRAEARGEDLVVVLLDGITDPR 105

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI+RSA      G++  +R S   S V+AK+A+GA  ++P  +  NL   + ++ + 
Sbjct: 106 NFGAIIRSAEVLGAHGVVVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKAE 165

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G + ++ + L +   + K+AL++GAEG+G+R   +E    +  + + G +++LN 
Sbjct: 166 GVWVYGAAGEAAQELGKVDFSGKLALVIGAEGEGMRRLVREKCDVLVSIPVRGKVQSLNA 225

Query: 266 SNAAAVALY 274
           S AA + LY
Sbjct: 226 SVAAGILLY 234


>gi|145220210|ref|YP_001130919.1| RNA methyltransferase [Prosthecochloris vibrioformis DSM 265]
 gi|145206374|gb|ABP37417.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeovibrioides DSM 265]
          Length = 249

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 95/169 (56%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPLLSPTLDAV----RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+    + +   T++ +    RN+  LL+VL  ++DPHNIGAI+R+A A + DG++  
Sbjct: 73  HQGVCALISTVTYYTIEELLSVPRNTAPLLVVLQGLDDPHNIGAIIRTAEAVAADGVVLV 132

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +      +AV+ K+++GAL H+   ++ +L  +L+ +H+ G + I    +++        
Sbjct: 133 EGKGAPVNAVVHKASAGALSHMRVAKVKSLVRSLEFLHANGIRVIATDMEAETNYTDADF 192

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A++LGAEG GL P+  E       + M G +++LNVS  A V LY
Sbjct: 193 RLPTAIVLGAEGSGLAPEAMEYCDETLRIPMAGCVESLNVSVTAGVVLY 241


>gi|240080889|ref|ZP_04725432.1| RNA methylase [Neisseria gonorrhoeae FA19]
 gi|240112748|ref|ZP_04727238.1| RNA methylase [Neisseria gonorrhoeae MS11]
 gi|240117794|ref|ZP_04731856.1| RNA methylase [Neisseria gonorrhoeae PID1]
 gi|254493607|ref|ZP_05106778.1| RNA methylase [Neisseria gonorrhoeae 1291]
 gi|268597006|ref|ZP_06131173.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae FA19]
 gi|268598815|ref|ZP_06132982.1| RNA methylase [Neisseria gonorrhoeae MS11]
 gi|226512647|gb|EEH61992.1| RNA methylase [Neisseria gonorrhoeae 1291]
 gi|268550794|gb|EEZ45813.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae FA19]
 gi|268582946|gb|EEZ47622.1| RNA methylase [Neisseria gonorrhoeae MS11]
          Length = 250

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|328955960|ref|YP_004373293.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
           glomerans PW2]
 gi|328456284|gb|AEB07478.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
           glomerans PW2]
          Length = 284

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 6/189 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPH 145
            P+  VP   +D +      HQG+ LET P    T++ V       + L++VLDHV D  
Sbjct: 82  VPIARVPRAKLDALS-SHGAHQGIVLETEPFPYATVEDVIARAGAGAALVVVLDHVTDEG 140

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI+RSA      G+I   + + +      K+++GA+ H+P  R+ N+  AL+ +   
Sbjct: 141 NFGAIVRSAEVVGAAGVIIASKRAAAVGVGAYKTSAGAVMHLPIARVPNIVRALEALKGA 200

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G +  ++  +       +IAL+ G+EG GL     E+      L   G  ++LNV
Sbjct: 201 GFWVGGATEHARDTVWDASLEGRIALVAGSEGSGLSRLVLESCDFTVRLPQRGQTESLNV 260

Query: 266 SNAAAVALY 274
           + AA V  Y
Sbjct: 261 AQAATVLCY 269


>gi|160932770|ref|ZP_02080159.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
 gi|156867844|gb|EDO61216.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
          Length = 255

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+V D +NDPHN+GAILR+A      G+I  KR S   +  + K+++GALE++P  R+S
Sbjct: 104 FLIVADELNDPHNLGAILRTAECTGAHGVIIPKRRSAGLTYTVGKASAGALEYVPVARVS 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  AL+ +   G    G   +     E E+     AL++G+EG G+    +E    +  
Sbjct: 164 NLAAALEDLKKRGLWIYGADMEGTPWCEAELTGPA-ALVIGSEGAGIGRLVKEKCDVILS 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L M G I +LN S AA V +Y
Sbjct: 223 LPMRGKINSLNASVAAGVLMY 243


>gi|299135854|ref|ZP_07029038.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX8]
 gi|298601978|gb|EFI58132.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX8]
          Length = 267

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 75/142 (52%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  + LD V DPHN+GA+LRSA     DG+I  +R S   SA +AKS++GA EH+   ++
Sbjct: 98  RFFLALDGVEDPHNLGALLRSADGSGIDGVIVPERRSAPLSATVAKSSAGASEHVRIAQV 157

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N+T AL+ M       +GL                  L+LG+EG GL    + T   + 
Sbjct: 158 VNITRALETMKKHNVWIVGLDERGTPDYTDFDFRQDCCLVLGSEGSGLHELVKRTCDHLL 217

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G + +LNVS A AV +Y
Sbjct: 218 RIPMAGSVSSLNVSVAGAVVMY 239


>gi|317164111|gb|ADV07652.1| RNA methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 255

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 68  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 128 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNAD 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 188 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 245


>gi|268603493|ref|ZP_06137660.1| RNA methylase [Neisseria gonorrhoeae PID1]
 gi|268587624|gb|EEZ52300.1| RNA methylase [Neisseria gonorrhoeae PID1]
          Length = 255

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 68  ISKGARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 128 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 188 LYHCNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 245


>gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
          Length = 318

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 102/191 (53%), Gaps = 10/191 (5%)

Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRS 153
           +D++ G   +HQG+ L+  P   +   D ++ +       L++ LD++ DP N+GA++RS
Sbjct: 129 LDRMTG-NGMHQGIGLQIPPYQYTQVEDLIQQAASAPQPGLVVALDNITDPRNLGAVIRS 187

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             AF   G+I  +R S S +AV  ++++G    +P  + +N+  +L+++   G+Q +GL 
Sbjct: 188 VAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRSLKQLQQAGYQVVGLD 247

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +     L+         +++G+EGKGL     ET  ++  + M   +++LN S AA V L
Sbjct: 248 AGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVL 307

Query: 274 --YITQNHFAK 282
             +  Q   AK
Sbjct: 308 SEFARQRRAAK 318


>gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205]
 gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola
           CNS-205]
          Length = 372

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 96/180 (53%), Gaps = 8/180 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D++ G   +HQG+ L+  P    P  D       + + LL+ LD V DP N+GA++RSA
Sbjct: 183 LDRMTGG-VLHQGVGLQVPPFRYEPFEDLTAAALEQAAPLLVALDGVTDPRNLGAVIRSA 241

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G+   +R +   +A   ++++GA   +P  +++NLT AL+     GF  +GL +
Sbjct: 242 AAFGAQGVFLPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFVVVGLDA 301

Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  L   E     + +++G+EG+GL     ET      + M   +++LN S AAAV L
Sbjct: 302 DGETDLYHLEASVGPLVVVVGSEGRGLSRLVGETCDLTVQIPMVSDVESLNASVAAAVTL 361


>gi|239998822|ref|ZP_04718746.1| RNA methylase [Neisseria gonorrhoeae 35/02]
 gi|240014263|ref|ZP_04721176.1| RNA methylase [Neisseria gonorrhoeae DGI18]
 gi|240016699|ref|ZP_04723239.1| RNA methylase [Neisseria gonorrhoeae FA6140]
 gi|240121826|ref|ZP_04734788.1| RNA methylase [Neisseria gonorrhoeae PID24-1]
 gi|240125597|ref|ZP_04738483.1| RNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268594665|ref|ZP_06128832.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae 35/02]
 gi|268684185|ref|ZP_06151047.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae SK-92-679]
 gi|268548054|gb|EEZ43472.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae 35/02]
 gi|268624469|gb|EEZ56869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae SK-92-679]
          Length = 250

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNAD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|325204004|gb|ADY99457.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240355]
          Length = 234

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+A      +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 47  ISKGARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 106

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 107 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNAD 166

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 167 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 224


>gi|312880239|ref|ZP_07740039.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
           DSM 12260]
 gi|310783530|gb|EFQ23928.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
           DSM 12260]
          Length = 261

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 120/240 (50%), Gaps = 21/240 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV- 105
            LYG + V A L +  R+  ++     T++       D       P++ +  + +++++ 
Sbjct: 12  LLYGRNAVWALLESQPRRCLKVWLAKGTRDPFRSRILDRCREAGIPLQELDGKGLERMLP 71

Query: 106 GKEAVHQGLALETAPL-----------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           GK  VHQG+A  TA +           + P  + V    L++VLDH+ DPHN GAI+RSA
Sbjct: 72  GK--VHQGVAARTAGVELLELREVLARIPPAPEPV----LVVVLDHLEDPHNAGAIVRSA 125

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A      +   R     +  + K+++GA   +P  RI N+   L+ +   G   +GL +
Sbjct: 126 EAVGALAALLPLRRGALPTGAMVKASTGAALRLPLGRIGNVGQDLRLLQEAGLWVVGLEA 185

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++ L +   + ++AL++G+EGKGL   T +    + H+ M G   +LN S AAA+ LY
Sbjct: 186 QGERSLFETPLSPRMALVVGSEGKGLGRTTLQGCDEVLHIPMRGESGSLNGSVAAALGLY 245


>gi|225024199|ref|ZP_03713391.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
           23834]
 gi|224943224|gb|EEG24433.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
           23834]
          Length = 248

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAAL-NNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L  NP    +++ L    +   +   +       PV  V    +D +  
Sbjct: 6   LIYGFHAVNARLWQNPKSLTELYALSGRHDTRMQQALEKAAQENIPVHFVEAARLDNLC- 64

Query: 107 KEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + A HQG+A           L   LD +    LL++LD + DPHN+GA LR A A     
Sbjct: 65  RHARHQGIAGFIDASHNHVHLDDVLDNLTEPPLLLILDGITDPHNLGACLRVADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++       +G     +  L 
Sbjct: 125 VIAPKNRSVGLNATVSKVACGAAETVPYIAVTNLARTLRELKERDIWIVGTDMGGEADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  +A ++G EG+G+R  T+E   ++  + M G +++LNVS +  + L  T+   A
Sbjct: 185 HYDIPAAVAWVMGNEGEGMRRLTREHCDALVSIPMLGTVESLNVSVSTGMVLAETRRQRA 244


>gi|325002579|ref|ZP_08123691.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia sp. P1]
          Length = 266

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 14/241 (5%)

Query: 46  PENLFL--YGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQT 100
           P++ F+  YG   V  AL++P  ++ +++   + + A  R    A      PV+    Q 
Sbjct: 21  PKDRFITVYGRKPVLEALSDPDLEVDKIVLADSVRGAGEREITAAARGRGVPVQRASAQR 80

Query: 101 IDKIVGKEAVHQG-LALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +  + G     QG LA   AP ++P       L + R + +L VLD V +P N+G ILRS
Sbjct: 81  VKVLAGNGRHDQGVLADVVAPRMAPLPVFLSDLGSRRPASVL-VLDAVTNPSNVGMILRS 139

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   DG++  +R  P+   ++ K+++G     P +R     + +  M   GF   GL 
Sbjct: 140 ATAAGLDGVLLPRRGVPAIDPLVIKASAGVAFAAPVLRCGTAAEGVDLMRDAGFSVFGLD 199

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + S   L+ E+ + ++AL+LG E  GL    +E    +  L M G +++LNV++A AVA 
Sbjct: 200 TGSGSLLDAELPH-RVALVLGNETDGLTEDVRERLDGILSLPMYGGVESLNVASAGAVAA 258

Query: 274 Y 274
           Y
Sbjct: 259 Y 259


>gi|294671054|ref|ZP_06735909.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307162|gb|EFE48405.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 249

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 123 HAVIAPKDKNAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 313

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L +   D   +  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 135 HQGLVLQVPPYEYAHPEDLANAAYDEGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 193

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   K+++G     P  R +NLT AL+     G   +GL++D +  + E
Sbjct: 194 LVPERRAAGMTAGAWKTSAGTAARTPVARCTNLTRALEAYKKAGVVVVGLAADGESEIGE 253

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E     + +++G+EGKGL     ET      + MPG  ++LN   AA V LY
Sbjct: 254 LEALGGPVVIVVGSEGKGLSRLVGETCDYRVRIPMPGGAESLNAGVAAGVVLY 306


>gi|297582428|ref|YP_003698208.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297140885|gb|ADH97642.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           selenitireducens MLS10]
          Length = 255

 Score = 95.9 bits (237), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V+TVP + +D++    A HQG+  + A      +D +             +VLD + DPH
Sbjct: 53  VQTVPRKRLDQMADGIA-HQGVIAQAAAYEYAEIDDLFARAKERGEDPFFLVLDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A    G+I  KR S   ++ +AK+++GA+ H+P  R++NL   + ++   
Sbjct: 112 NLGSILRTADASGAHGVIIPKRRSVGLTSTVAKTSAGAIAHVPVARVTNLARTMDELKKQ 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +G  +      E    +  +AL++G+EGKG+    +E    +  + + G + +LN 
Sbjct: 172 GLWFVGTDAKGDVSYEGMTVDLPLALVIGSEGKGMSRLVKEKCDFLVSIPLMGKVTSLNA 231

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 232 SVAASLLMY 240


>gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191]
 gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191]
          Length = 249

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 17/248 (6%)

Query: 47  ENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTI 101
           +NL  ++GVH V+  + N  R++ QL    N       +  +     +   +  +  +T+
Sbjct: 3   DNLDIVFGVHAVTEVIKNRKRRVIQLYVLDNKAGHRGIEDAIKAAKRNNIKIDRMDVKTM 62

Query: 102 DKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAV 155
           D +  K+  HQG+A    P+    L   +D  R ++  L + +D + DP N+G+I+RSA 
Sbjct: 63  DALT-KKGNHQGIAARVEPVKIMRLIDAIDVSRGNKKDLWIAVDEMTDPQNLGSIIRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                 II   R +   +  + K ASGA E +  + ++NL  AL  +   GF   G    
Sbjct: 122 CLGFSTIILPSRRTVGLTPSVYKVASGATEKVTVVEVANLATALLDLKDEGFWIYGADMG 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSNAAAVALY 274
            +  ++ +     + L++G+EG G+R KT E    +  +   PG + +LN +NAA++ ++
Sbjct: 182 GQSIVKTDYSFPAV-LVVGSEGTGIREKTAEHCDQVVSIPQAPGSVDSLNAANAASIIMF 240

Query: 275 ITQNHFAK 282
              + FAK
Sbjct: 241 ---DMFAK 245


>gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
 gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
          Length = 319

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 85/141 (60%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD ++DPHN GAILR+A A    G+I  KR +   ++ ++K+++GA+E++P  R++
Sbjct: 171 FIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGLTSTVSKASAGAVEYVPVSRVT 230

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N++  ++ +       +G  S  +K   +      +AL++G+EG+G+    +E    + +
Sbjct: 231 NISQTIEYLKKNNVWVVGTDSTGEKAFYESDLKGPMALVVGSEGEGMGKLVREKCDFVVN 290

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AAA+ +Y
Sbjct: 291 IPMKGEISSLNASVAAAIVMY 311


>gi|239981216|ref|ZP_04703740.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
 gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
 gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
          Length = 312

 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L +   DA ++  L+++LD V DP N+GA++RS  AF   G+
Sbjct: 134 HQGLVLQVPPYEYAHAEDLTAAAYDAGQDP-LIVLLDGVTDPRNLGAVVRSVSAFGGHGV 192

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   KS++GA    P  R +NLT  L+     G   +GL++D +  + +
Sbjct: 193 VVPERRAAGMTAGAWKSSAGAAARTPVARATNLTRTLEAYKKEGVVVVGLAADGEADVTD 252

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +A+++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 253 LPALEGPVAIVVGSEGKGLSRLVGETCDIRVRIPMPGGAESLNAGVAAGIVLY 305


>gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
 gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
          Length = 314

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 10/181 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L +   D   +  L++ LD V DP N+GAI+RS  AF   G+
Sbjct: 134 HQGLVLQVPPYEYAHPEDLPAAAYDEG-DDPLIVALDGVTDPRNLGAIVRSVSAFGGHGV 192

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D +  + E
Sbjct: 193 VVPERRAAGMTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHAVGE 252

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  + +++G+EGKGL     ET      + MPG  ++LN   AA + +Y   +  A
Sbjct: 253 LAALDGPVVIVIGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRA 312

Query: 282 K 282
           +
Sbjct: 313 R 313


>gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG]
 gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF]
          Length = 314

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 10/181 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L +   D   +  L++ LD V DP N+GAI+RS  AF   G+
Sbjct: 134 HQGLVLQVPPYEYAHPEDLPAAAYDE-GDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGV 192

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D +  + E
Sbjct: 193 VVPERRAAGMTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGE 252

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  + +++G+EGKGL     ET      + MPG  ++LN   AA + +Y   +  A
Sbjct: 253 LAALDGPVVIVIGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRA 312

Query: 282 K 282
           +
Sbjct: 313 R 313


>gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           griseoflavus Tu4000]
 gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           griseoflavus Tu4000]
          Length = 314

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 90/173 (52%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L++   D  ++  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 136 HQGLVLQVPPYEYAHPEDLVAGAHDEGQDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 194

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R +   +A   K+++GA    P  R +NLT AL+     G   +GL++D +  L  
Sbjct: 195 VVPERRAAGMTAGAWKTSAGAAARTPVARATNLTRALEAYKKAGITVVGLAADGEAELGS 254

Query: 223 EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               D  + +++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 255 LAALDGPVVIVVGSEGKGLSRLVGETCDHRVRIPMPGGTESLNAGVAAGIVLY 307


>gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
 gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
          Length = 307

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 10/181 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L +   D   +  L++ LD V DP N+GAI+RS  AF   G+
Sbjct: 127 HQGLVLQVPPYEYAHPEDLPAAAYDE-GDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGV 185

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D +  + E
Sbjct: 186 VVPERRAAGMTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGE 245

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  + +++G+EGKGL     ET      + MPG  ++LN   AA + +Y   +  A
Sbjct: 246 LAALDGPVVIVIGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRA 305

Query: 282 K 282
           +
Sbjct: 306 R 306


>gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
 gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
          Length = 361

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 11/174 (6%)

Query: 109 AVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           A HQGLAL   P        +L+ T  A     L++ LD V DP N+GA++RSA AF  +
Sbjct: 176 APHQGLALSVPPFEYAHPDDVLAATQSAA--PGLVVALDGVTDPRNLGAVVRSAAAFGAN 233

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +R +   +A   K+++GA   +P  R  NLT  L+     G   +GL++D +  +
Sbjct: 234 GVVVPERRAAGMTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLAADGEVDI 293

Query: 221 EQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  ++  D + L++G+EG+GL     E       + M G +++LN   A  +AL
Sbjct: 294 DDLQVAADPLVLVVGSEGRGLSRLVGECCDLKVRIPMAGAMESLNAGVATGIAL 347


>gi|304436602|ref|ZP_07396571.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370298|gb|EFM23954.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 272

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 7/198 (3%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141
           H   V TV    +D +V ++  HQG     AP+    ++ +           LL++LD +
Sbjct: 68  HGITVDTVGRSKLDALVSQDVRHQGAVAYVAPVAYAAVEEIIAGARARGEDPLLLLLDGI 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GA+LR+A A    GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ 
Sbjct: 128 EDPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTMRA 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF   G     ++  +       + L++G+EG+G+   T++       L M G I 
Sbjct: 188 LKEQGFWIAGADMSGEETYDHANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMVGKIN 247

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN S A A+ +Y  Q  
Sbjct: 248 SLNASVAGAILMYEAQRQ 265


>gi|324521326|gb|ADY47830.1| RRNA methyltransferase 1 [Ascaris suum]
          Length = 334

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 25/233 (10%)

Query: 32  KMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ ++ +++R    P+     +YG + V  AL    R I++L A  + L R   D  +  
Sbjct: 58  EINAYCKRNRSVMVPKVRGEIVYGTYPVLEALKANRRSIYKLFAKASVLGRAKQDDIIAK 117

Query: 90  PF---------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL--DAVRNSQLLMVL 138
                       +K +    +D ++ +  +H GL ++ +PL    L  + + N+++ + L
Sbjct: 118 KILRLANDSGVDIKALNADQLD-VLTEYQLHNGLCIDASPLSYEVLCDEDIVNAKIFLYL 176

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIPYIRISNLTD 197
           D V DP NIGAI+RS   F  DG+I  +   P   +A ++K+++GALE  P   + +   
Sbjct: 177 DKVLDPGNIGAIIRSCFYFRIDGVILARDQGPKTLTAAMSKASAGALERFPVYTVEDFPS 236

Query: 198 ALQKMHSWGFQTIGLSSDSK---KPLEQEIK-------NDKIALILGAEGKGL 240
             +++ + GF+ I  S ++    K  +  I+       NDK+ +ILG EG+G+
Sbjct: 237 FRKRLRNVGFKFIATSDENSAITKGYQSPIRLPDFRPINDKVVIILGDEGRGI 289


>gi|194098420|ref|YP_002001479.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
 gi|193933710|gb|ACF29534.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
          Length = 250

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 63  ISKGARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 123 HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNAD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 183 LYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 240


>gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 318

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 10/191 (5%)

Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRS 153
           +D++ G   +HQG+ L+  P   +   D ++ +       L++ LD++ DP N+GA++RS
Sbjct: 129 LDRMTG-NGMHQGIGLQIPPYQYTQVEDLIQQAASAPQPGLVVALDNITDPRNLGAVIRS 187

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             AF   G+I  +R S S +AV  ++++G    +P  + +N+  +L++    G+Q +GL 
Sbjct: 188 VAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRSLKQFQQAGYQVVGLD 247

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +     L+         +++G+EGKGL     ET  ++  + M   +++LN S AA V L
Sbjct: 248 AGGDHTLDTYDGTTPTVIVVGSEGKGLSRLVSETCDTIMSIPMAKWVESLNASVAAGVVL 307

Query: 274 --YITQNHFAK 282
             +  Q   AK
Sbjct: 308 SEFARQRRAAK 318


>gi|257057470|ref|YP_003135302.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
           43017]
 gi|256587342|gb|ACU98475.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
           43017]
          Length = 312

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 8/173 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAV----RNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQGL L+  P    T D +    R S    LL+ LD V DP N+GAI+RSA AF   G
Sbjct: 127 AVHQGLGLQVPPFSYATPDELLQTARESGEPPLLVALDGVTDPRNLGAIIRSAAAFGAHG 186

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++   R S   +AV  ++++GA   +P    +NLT  L++  + G    GL +D    ++
Sbjct: 187 VLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLKEWAAEGLLIAGLDADGSTDID 246

Query: 222 -QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              I  D + +++G+EG+GL    +ET      + M   +++LN S A AV L
Sbjct: 247 TMNIDVDPLVVVVGSEGRGLSRLVRETCDFTVSIPMASGVESLNASVAGAVLL 299


>gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
 gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
          Length = 335

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P        L+          L++ LD V DP N+GA++RS  AF   G++
Sbjct: 157 HQGLVLQVPPYEYAHPEDLADAAADAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVV 216

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQ 222
             +R +   +A   K+++G     P  R +NLT AL++    G   +GL++D +  L + 
Sbjct: 217 VPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEQYQKAGLTVVGLAADGEAELGDL 276

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + +++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 277 DALEGPVVIVVGSEGKGLSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLY 328


>gi|330838632|ref|YP_004413212.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
 gi|329746396|gb|AEB99752.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
          Length = 278

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 12/248 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPV 93
            Q+ R  +   +  L G + V  AL    R I ++L  + A                 PV
Sbjct: 22  RQEERRDAPSADEILVGRNAVFEALK-AGRGINRILVAQGAKEAALAPLLSLAREQGVPV 80

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
           +    + +D++   +  HQG+    AP+   +LD V           LL++LD + DPHN
Sbjct: 81  RASKREKLDQLA-PDMRHQGVIAYAAPVAYASLDDVFACAEEKGEPPLLLLLDEIEDPHN 139

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GA+LR+A A    G++  +R   + +A +AK+++GA+EH+  +RI N+   ++++   G
Sbjct: 140 FGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRVVRIGNIVQEMKRLKERG 199

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +G      + +        + +++G+EGKGL    +ET   +  + M G I +LN S
Sbjct: 200 LWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETCDFLVRIPMHGAINSLNAS 259

Query: 267 NAAAVALY 274
            A A+ +Y
Sbjct: 260 VAGALLMY 267


>gi|33519562|ref|NP_878394.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus]
 gi|52783302|sp|Q7VQP0|RLMB_BLOFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33517225|emb|CAD83607.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
           floridanus]
          Length = 254

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 124/252 (49%), Gaps = 26/252 (10%)

Query: 50  FLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----I 104
            +YG+HTV + +N +P+R +   + +     RL    +L +      +  Q   +    I
Sbjct: 4   LVYGIHTVESIVNQSPNRILIVYIVSNPRDLRLK---SLIYRIRKMNINIQECTRRVLNI 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDA--------VRNS--QLLMVLDHVNDPHNIGAILRSA 154
              ++ HQG+  E  P+  P L+          +N+   LL+VLD + DPHN+GA +RSA
Sbjct: 61  KSMKSAHQGIIAEVIPM--PALNEDYLLHFLKTKNNIIPLLLVLDGITDPHNLGACIRSA 118

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     II  +  S + +A + K ASG+ + +P++R++NL+  L+ +  +    +G   
Sbjct: 119 DAAGVHMIIVPRDRSANVNATVRKVASGSSDRVPFVRVTNLSRTLKLLKKYNIYIVGSVL 178

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            S + L      D IAL++G+E  G+R  T+E    + H+       +LNVS A  + L+
Sbjct: 179 RSNQILFNTRLIDPIALVMGSESSGIRRLTRENCDKLVHIPTLQSTVSLNVSVATGIFLF 238

Query: 275 IT------QNHF 280
            T      QN F
Sbjct: 239 ETVRQRKYQNGF 250


>gi|296313879|ref|ZP_06863820.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
           polysaccharea ATCC 43768]
 gi|296839525|gb|EFH23463.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
           polysaccharea ATCC 43768]
          Length = 194

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 5/178 (2%)

Query: 105 VGKEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+     A +    L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 7   ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 66

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 67  HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 126

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+
Sbjct: 127 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETR 184


>gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
 gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
          Length = 323

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 8/172 (4%)

Query: 111 HQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P         LDA  ++    L++ LD V DP N+GAI+RS  AF   G++
Sbjct: 140 HQGLVLQVPPYEYAHPEDLLDAAHDNGEDALIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222
             +R +   +A   K+++G     P  R++NLT ALQ     G   +GL+++    ++  
Sbjct: 200 IPERRAAGMTAGAWKTSAGTAARTPVSRVTNLTRALQDYKKAGITVVGLAAEGTHEVQDL 259

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + +++G+EGKGL     E    +  + MPG  ++LN   AA V LY
Sbjct: 260 DALGGPVVIVVGSEGKGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311


>gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
 gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
          Length = 322

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 11/200 (5%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDH 140
           H   +  V  + +D++  + A+HQG+AL+  P        L+    DA     L++ LD 
Sbjct: 122 HGIAMLEVGKEKLDRLT-EGAIHQGMALQIPPYEYAHPEDLIGIAQDAA-EVPLIVALDS 179

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+GAI RSA AF   G++   R S   +    K+++G L H+   R +NLT  L+
Sbjct: 180 VTDPRNLGAIARSATAFGAHGMVIPSRRSAGVTGGAWKTSAGTLAHLTVARAANLTATLR 239

Query: 201 KMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +    G   IGL  +S   + +  + +  + +++G+EGKGL    +E+   +  + M   
Sbjct: 240 EYREAGLFVIGLDGESTVDIGDANLLDGPLVVVVGSEGKGLSRLVRESCDLVVRIPMNAA 299

Query: 260 IKALNVSNAAAVALYITQNH 279
            ++LN   AA VALY    H
Sbjct: 300 AESLNAGVAAGVALYEVARH 319


>gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
           DSM 43247]
 gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
           DSM 43247]
          Length = 316

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 7/172 (4%)

Query: 109 AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +HQG+AL+           L     A     LL+ LD++ DP N+GA++RS  AF   G
Sbjct: 135 GLHQGVALQVPEYTYAHPDDLLAAAKASGTPALLVALDNITDPRNLGAVIRSVAAFGGHG 194

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++   R S S +AV  ++++GA   +P  + +NLT  L+     G Q +GL +D    L+
Sbjct: 195 VVIPARRSASVTAVAWRTSAGAAARLPVAQATNLTRTLKDWAESGAQLVGLDADGDVTLD 254

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                    +++G+EGKGL    +E+  S+  + M G +++LN S AA V L
Sbjct: 255 DYDGTGPTVIVVGSEGKGLSRLVRESCDSILSIPMAGDVESLNASVAAGVVL 306


>gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis
           MA-4680]
          Length = 313

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P        LS     V    L++ LD V DP N+GA++RS  AF   G++
Sbjct: 135 HQGLVLQVPPYEYAHPEDLSAAAYDVGEDPLVVALDGVTDPRNLGAVVRSVSAFGGHGVV 194

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQ 222
             +R +   +A   K+++G     P  R +NLT  L+     G   +GL++D +  L + 
Sbjct: 195 VPERRAAGMTAGAWKTSAGTAARTPVARATNLTRTLESYKKEGLVVVGLTADGEVELGDL 254

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E     + +++G+EGKGL     ET      + MPG  ++LN   AA V LY
Sbjct: 255 EALAGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGVVLY 306


>gi|289642391|ref|ZP_06474538.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
           Datisca glomerata]
 gi|289507823|gb|EFD28775.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
           Datisca glomerata]
          Length = 409

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 96/181 (53%), Gaps = 12/181 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDP 144
           V  V    +D++ G  A HQGLAL   P        LL+   +A     LL+ LD V DP
Sbjct: 206 VADVARGDLDRLCGS-APHQGLALSVPPFRYAHPDDLLARAQEA--PPGLLVALDGVTDP 262

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA++RSA AF   G++  +R +   +A   K+++GA   +P  R +NL  AL     
Sbjct: 263 RNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLVRALTGWAQ 322

Query: 205 WGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G   +GL++D +  L++ E+ +D + L++G+EG+GL     E       + M G +++L
Sbjct: 323 AGLFVVGLAADGEVSLDELEMASDPLVLVVGSEGRGLSRLVGERCDLTVRIPMAGDVESL 382

Query: 264 N 264
           N
Sbjct: 383 N 383


>gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
 gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
          Length = 315

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 10/181 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L +   D      L++ LD V DP N+GAI+RS  AF   G+
Sbjct: 135 HQGLVLQVPPYEYAHPEDLPAAAYDEG-GEPLIVALDGVTDPRNLGAIVRSVSAFGGHGV 193

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D +  + E
Sbjct: 194 VVPERRAAGMTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGE 253

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  + +++G+EGKGL     ET      + MPG  ++LN   AA + +Y   +  A
Sbjct: 254 LAALDGPVVIVIGSEGKGLSRLVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRA 313

Query: 282 K 282
           +
Sbjct: 314 R 314


>gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
 gi|148571048|gb|ABQ93107.1| RNA methyltransferase, TrmH family, group 3 [Psychrobacter sp.
           PRwf-1]
          Length = 261

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 111 HQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+ L   PL       +      +  L +VLD + D HN+GA LR+A A   D +I  
Sbjct: 79  HQGVVLNARPLAMADEGEIASLAQSDDALFLVLDQITDAHNLGACLRTAAAMGVDAVICP 138

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEI 224
           K +S S +  +AK + GA+E +P I ++NL   ++ +   G    G + D + K L    
Sbjct: 139 KHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQAGVFVYGTALDATAKALPDVD 198

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274
              K+A+I+G+EG+G+R  T E    + ++ M     G +++LNVS A  + LY
Sbjct: 199 LKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLY 252


>gi|260887695|ref|ZP_05898958.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
 gi|260862575|gb|EEX77075.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
          Length = 287

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 119/248 (47%), Gaps = 12/248 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPV 93
            Q+ R  +   +  L G + V  AL    R I ++L  + A                 PV
Sbjct: 31  RQEERRDAPSADEILVGRNAVFEALK-AGRGINRILVAQGAKEAALAPLLSLAREQGVPV 89

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
           +    + +D++   +  HQG+    AP+   +LD V           LL++LD + DPHN
Sbjct: 90  RASKREKLDQLA-PDMRHQGVIAYAAPVAYASLDDVFACAEEKGEPPLLLLLDEIEDPHN 148

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GA+LR+A A    G++  +R   + +A +AK+++GA+EH+  +RI N+   ++++   G
Sbjct: 149 FGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVRVVRIGNIVQEMKRLKERG 208

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +G      + +        + +++G+EGKGL    +ET   +  + M G I +LN S
Sbjct: 209 LWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETCDFLVRIPMHGAINSLNAS 268

Query: 267 NAAAVALY 274
            A A+ +Y
Sbjct: 269 VAGALLMY 276


>gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440]
 gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica
           CNB-440]
          Length = 373

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 8/180 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D++ G   +HQG+ L+  P    P  D       + + LL+ LD V DP N+GA++RSA
Sbjct: 184 LDRMTGG-VLHQGVGLQVPPFRYEPFEDLTAAALEQPAPLLVALDGVTDPRNLGAVIRSA 242

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G+   +R +   +A   ++++GA   +P  +++NLT AL+     GF  +GL +
Sbjct: 243 AAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFVVVGLDA 302

Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  L   E     + +++G+EG+GL     +T      + M   +++LN S AAAV L
Sbjct: 303 DGETDLYHLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVQIPMVSDVESLNASVAAAVTL 362


>gi|256833281|ref|YP_003162008.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
           DSM 20603]
 gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
           DSM 20603]
          Length = 326

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 8/174 (4%)

Query: 109 AVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +VHQG+A+         +   LDA  +   + LL+ LD V DP N+GAILR+  AF   G
Sbjct: 141 SVHQGVAMGVPAYEYLEVDDLLDAAASKGQAPLLIALDSVTDPRNLGAILRAGGAFGAHG 200

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R +   +A   K ++GA   +P  R++NL  +L+ +   G   +GL  D+   + 
Sbjct: 201 VIVPERRAAGMTASAWKVSAGAAARVPVARVTNLVRSLEALKKSGCFVVGLDGDADSSVR 260

Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 D + L++G+EGKGL    +ET  ++A + +   +++LN + AA + LY
Sbjct: 261 DLPFAADPLVLVVGSEGKGLSRLVRETCDAIAAIPISTTVESLNAAVAAGITLY 314


>gi|284047633|ref|YP_003397972.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
           fermentans DSM 20731]
 gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
           fermentans DSM 20731]
          Length = 250

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 8/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143
            PV+ V  + +D++      HQG+A + AP+    LD V           LL++LD + D
Sbjct: 47  IPVEKVSREVLDRLA-DGVRHQGVAAQGAPVAFQDLDTVLARVESRGEVPLLLLLDELQD 105

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++R+A A    G++  +R S   +AV+AK ++GA+E++P I+I N+   ++++ 
Sbjct: 106 PQNVGALIRTANAAGVHGVLLPQRRSCPLNAVVAKISAGAIEYVPVIQIGNIPQTMKQLK 165

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             GF   G   D +           + L++GAEGKGL    +E    +  + M G + +L
Sbjct: 166 KRGFWIAGADMDGEDQYFDANLTGPMVLVVGAEGKGLGRLVKENCDFIVRIPMLGQVSSL 225

Query: 264 NVSNAAAVALY 274
           N S A  + LY
Sbjct: 226 NASVAGGILLY 236


>gi|145640974|ref|ZP_01796556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae R3021]
 gi|145274488|gb|EDK14352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 22.4-21]
          Length = 189

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 97/175 (55%), Gaps = 13/175 (7%)

Query: 110 VHQGLA--LETAPLLSPT-LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           VHQG+   ++ A  L+   LD +   + + LL+VLD V DPHN+GA LR+A A     +I
Sbjct: 9   VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVAVI 68

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSKKP 219
             K  S   +++  K A GA E +P IR++NL+  L+ +      W    +G + ++ + 
Sbjct: 69  VPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEATET 125

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 126 IYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 180


>gi|90408972|ref|ZP_01217104.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
           CNPT3]
 gi|90309920|gb|EAS38073.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
           CNPT3]
          Length = 246

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQL--LATKNALARLDWDANLPH-PFPVKTVPPQTIDKIVG 106
            +YG+H V A L     +I ++  L  ++     D      H    V+ +  +++D+   
Sbjct: 6   IIYGMHAVDALLEREPERIIEIYTLKGRDDQRITDITEKAKHWGISVQEMLRKSLDEKAQ 65

Query: 107 KEAVHQGLA--LETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+   ++ A +L+       L+ +  +  L++LD V DPHN+GA LRSA A   
Sbjct: 66  CEQ-HQGVLARIKIAKVLNDNDLESLLENLTEAPFLLILDGVTDPHNLGACLRSADAAGV 124

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S S + V+ K A GA E +  I+++NL   ++ +   G    G + ++   
Sbjct: 125 HAVIIPKDNSASLTPVVRKVACGAAESVALIQVTNLARCMRSLQDKGIWIYGTAGEATGS 184

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     +  IA+ +GAE KGLR  T+E   ++  L M G + +LNVS A  + L+
Sbjct: 185 VYDCQFSGGIAIAMGAEDKGLRRLTREHCDALIKLPMAGSVSSLNVSVATGICLF 239


>gi|219853507|ref|YP_002470629.1| hypothetical protein CKR_0164 [Clostridium kluyveri NBRC 12016]
 gi|219567231|dbj|BAH05215.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 256

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 97/189 (51%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145
           VK V  + +D+I  +  VHQG+  +  P     L+ + +       S  +++LD + DPH
Sbjct: 57  VKKVDKRKLDRI-SQTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDEIQDPH 115

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI+R+A      GII  KR +   +  + KS++GA+E++   +++NL   ++K+   
Sbjct: 116 NFGAIIRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIEKLKKE 175

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                G     +        N  IALI+G+EGKG+   T++    +  + M G I +LN 
Sbjct: 176 NIWIYGADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNISSLNA 235

Query: 266 SNAAAVALY 274
           S AA + +Y
Sbjct: 236 SVAAGMLMY 244


>gi|50841866|ref|YP_055093.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
           KPA171202]
 gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
           KPA171202]
          Length = 318

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 9/182 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD---AVRN----SQLLMVLDHVNDPHNIGAILRS 153
           +D++ G  + HQG+AL        T+D   A  N      L++ LD V DP N+GAI+RS
Sbjct: 126 LDRMTGG-SNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRS 184

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   G++   R S S +A   K+++GA   +P    SNL  AL K  + G+  +GL+
Sbjct: 185 AAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLA 244

Query: 214 SDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            ++   +      D  + L++G+EG+GL   T+++   +  + +   +++LN S AA++A
Sbjct: 245 GEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIA 304

Query: 273 LY 274
           LY
Sbjct: 305 LY 306


>gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL030PA1]
          Length = 318

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 9/182 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD---AVRN----SQLLMVLDHVNDPHNIGAILRS 153
           +D++ G  + HQG+AL        T+D   A  N      L++ LD V DP N+GAI+RS
Sbjct: 126 LDRMTGG-SNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRS 184

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   G++   R S S +A   K+++GA   +P    SNL  AL K  + G+  +GL+
Sbjct: 185 AAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLA 244

Query: 214 SDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            ++   +      D  + L++G+EG+GL   T+++   +  + +   +++LN S AA++A
Sbjct: 245 GEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIA 304

Query: 273 LY 274
           LY
Sbjct: 305 LY 306


>gi|296128533|ref|YP_003635783.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
           DSM 20109]
 gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
           DSM 20109]
          Length = 333

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 9/191 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPL--LSPT--LDAVRNSQ---LLMVLDHVNDP 144
           P+  V    +D++    AVHQG+AL+  P   L P   LD   +SQ   L++ LD + DP
Sbjct: 136 PLLEVGRAELDRLT-DGAVHQGVALQVPPYEYLDPDDLLDTAESSQTVPLVVALDGITDP 194

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA+LRSA AF   G++  +R +   +A   K ++GA   +P  R +NLT ALQ    
Sbjct: 195 RNLGAVLRSAGAFGAHGVLVPERRAAGVTASAWKVSAGAAARVPVARATNLTRALQDYRR 254

Query: 205 WGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G   +GL +    PL +     D + L++G+EGKGL    +E   ++  + +   +++L
Sbjct: 255 AGVFVVGLDAGGDVPLADLPFAADPLVLVVGSEGKGLSRLVREQCDAIVSIPIASAVESL 314

Query: 264 NVSNAAAVALY 274
           N   AA +ALY
Sbjct: 315 NAGVAAGIALY 325


>gi|217967856|ref|YP_002353362.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
           DSM 6724]
 gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
           DSM 6724]
          Length = 239

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 106/191 (55%), Gaps = 12/191 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPL-----LSPTLDAVRNSQLLMVLDHVND 143
            P+K V    I+K+V  +   QG+   L + P      L  +LD   N  +++VLDH+ D
Sbjct: 48  IPIKYVERSFIEKMV--DGNSQGVLAILSSVPYKDWKELEKSLD---NKSIIVVLDHIQD 102

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P+N+GAI R++       I+  K  S   ++V  K+++GAL +IP IR+SN+ + L+++ 
Sbjct: 103 PYNLGAIARTSEFAGVSAIVIPKARSAGITSVSFKTSAGALSYIPVIRVSNIANFLRELK 162

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+  +G   +++    +   N  +AL++G+EG+GL    +E+   +  +   G +++L
Sbjct: 163 GKGWFIVGADLNTENLYNKVEYNFPLALVVGSEGEGLHRIVRESCDLLVKIPSYGKVESL 222

Query: 264 NVSNAAAVALY 274
           NVS A  + LY
Sbjct: 223 NVSVAVGIILY 233


>gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes J139]
 gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes J139]
 gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA2]
 gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL001PA1]
 gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL044PA1]
 gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL082PA2]
 gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA3]
 gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA3]
 gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA4]
 gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL060PA1]
 gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA2]
 gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL103PA1]
 gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
           P08]
          Length = 318

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 9/182 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD---AVRN----SQLLMVLDHVNDPHNIGAILRS 153
           +D++ G  + HQG+AL        T+D   A  N      L++ LD V DP N+GAI+RS
Sbjct: 126 LDRMTGG-SNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRS 184

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   G++   R S S +A   K+++GA   +P    SNL  AL K  + G+  +GL+
Sbjct: 185 AAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLA 244

Query: 214 SDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            ++   +      D  + L++G+EG+GL   T+++   +  + +   +++LN S AA++A
Sbjct: 245 GEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIA 304

Query: 273 LY 274
           LY
Sbjct: 305 LY 306


>gi|157373892|ref|YP_001472492.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|157316266|gb|ABV35364.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sediminis
           HAW-EB3]
          Length = 246

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 18/238 (7%)

Query: 50  FLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           F +G+H V A L ++P R I   +       RL   A L        V  QT  + V  E
Sbjct: 6   FTFGIHAVEAVLKHSPERVIEMWVQAGRDDQRL---ATLLQMAAEYGVSVQTSARKVLDE 62

Query: 109 ----AVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                 HQG+         L    LL+  L     +   ++LD V DPHN+GA LR+A A
Sbjct: 63  KSDNGQHQGVLARVKAVKQLNDNDLLA--LVEKTETPFFLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVGAAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L +      +A+ +GAE KGLR  T+E+  S+A + M G + +LNVS A+ + L+
Sbjct: 181 DSDLYKTDLKGSLAIAMGAEDKGLRRLTRESCDSIASIPMSGSVSSLNVSVASGICLF 238


>gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter
           sp. 1501(2011)]
          Length = 262

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 12/175 (6%)

Query: 111 HQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+ L   PL         TL    ++ L +VLD + D HN+GA LR+A A   D +I 
Sbjct: 80  HQGVVLNARPLAMADEGEIATLAKAEDA-LFLVLDQITDAHNLGACLRTAAAMGVDAVIC 138

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223
            K +S S +  +AK + GA+E +P I ++NL   ++ +   G    G + D + K L   
Sbjct: 139 PKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQSGVFVYGTALDETAKALPDV 198

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274
               K+A+I+G+EG+G+R  T E    + ++ M     G +++LNVS A  + LY
Sbjct: 199 DLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVATGMVLY 253


>gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 247

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 10/236 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPF--PVKTVPPQTIDKI 104
           N  ++G H+V A L     +  ++ A K     RL         F   V+ +  + +D  
Sbjct: 3   NELIFGFHSVEAILAKEPERFIEIYALKGRDDKRLSPVIEQARQFGISVQFMQRKALDN- 61

Query: 105 VGKEAVHQGLA--LETAPLLSP-TLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K+  HQG+   ++ A + +   LD +    ++  L+VLD + DPHN+GA LRSA A  
Sbjct: 62  KAKDEQHQGIIANVKAARVFNEKDLDEIIEREDTPFLLVLDGITDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +    K A GA E +P I+++NL   L+++   G   +G + ++  
Sbjct: 122 VHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDT 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGTVSSLNVSVATGICLF 237


>gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 314

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 26/269 (9%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK 75
           +H  KL R  RD           RH  +  +L + G + V   L+   P+  +F  L T 
Sbjct: 47  AHKRKLERQRRD---------SGRHEKEKADLVV-GRNPVVECLHAKVPAEALFVALGTA 96

Query: 76  NALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPT 125
           +   RL     L +    PV  VP + +D + G   +HQG+ L+  P        L++  
Sbjct: 97  HD-DRLSEAVTLANSKGLPVHEVPRRDLDTMTGN-GLHQGIGLKIQPYKYADVFDLMAGV 154

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            D  +   + +VLD++ DP N+GA++RS  AF   G+I  +R S   + V  ++++G   
Sbjct: 155 KDRGQTG-MFVVLDNITDPRNLGAVIRSTAAFGGHGVIIPERRSAQVTGVAWRTSAGTAA 213

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKT 244
            +P  +  N+T  +++    G+  +GL +  +  L+  +   D + +++G+EGKG+    
Sbjct: 214 RLPVAKAVNITRTIKEFKDNGYIVVGLDAGGEHTLDTFDGGADPVVIVVGSEGKGISRLV 273

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +E    +  +     +++LN S AA V L
Sbjct: 274 RENCDVLMSIPTESWVESLNASVAAGVVL 302


>gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54]
 gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila
           LSv54]
          Length = 295

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 133/268 (49%), Gaps = 21/268 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLD 82
           RR+++   + +    + R     E+L ++G+H +  AL     +I +++A K+   A+ D
Sbjct: 23  RRDNKSAGQDKKAATQDRRIRFSEDL-IWGIHPIVEALKYEPNRISEIIAQKDRRGAKFD 81

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAV---HQGLA--------LETAPLLSPTLDAVRN 131
               L     VK     +I  + G  A    HQG+         ++ A  L    DAV  
Sbjct: 82  EIVELARAAKVKVTFIDSI-SLQGDGAASARHQGVIAKVTQADLMDFADFLQKFKDAVDR 140

Query: 132 SQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +   ++V D + DPHN+GAI+RSA+A    G++ T+  S       AKS++GA+ H+  
Sbjct: 141 GEKPRIIVCDSLQDPHNLGAIVRSALASGAIGVLLTRERSAPLGGTAAKSSAGAISHMDI 200

Query: 190 IRISNLTDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            +++NL  +   L+K+ +W F  I   +D+    + ++ N    +++G+EG G+RP  + 
Sbjct: 201 CQVTNLVKSLAELKKVGAWVFGAIK-DADAVSLFDADL-NVPACIVVGSEGTGIRPLVRR 258

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                  + M G + +LN S AAAV L+
Sbjct: 259 ECDIQLSIPMVGELDSLNSSVAAAVILF 286


>gi|269798074|ref|YP_003311974.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           DSM 2008]
 gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           DSM 2008]
          Length = 243

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 12/234 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++ G + V  AL +  R I ++L +    K  LA +  D        V+  P + ++K  
Sbjct: 4   YIVGRNAVKEALKS-GRSIQRILVSEDRVKTGLADI-VDLAKSQGIEVRPTPVKQMNKY- 60

Query: 106 GKEAVHQG-LALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCD 160
             E  HQG +AL +A       + ++ +     LL++ D V DPHN+GAI+R+A      
Sbjct: 61  DLEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGAT 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  KR++   +A +AK+++GA+E IP ++I N+T  ++++   GF  +G   +  + L
Sbjct: 121 AVLIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVTQTIKQLQKQGFWVMGAHMEGDRTL 180

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +        +++G EGKG+    +E    +  + M G + +LN S AAAV +Y
Sbjct: 181 YEADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMY 234


>gi|321309539|ref|YP_004191868.1| RNA methyltransferase TrmH [Mycoplasma haemofelis str. Langford 1]
 gi|319801383|emb|CBY92029.1| RNA methyltransferase TrmH group 3 [Mycoplasma haemofelis str.
           Langford 1]
          Length = 244

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 8/149 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIP 188
           R   L+++LDH+ DP N+GAILR+  AF  DG+I  K + +P    V  KS+ G   +I 
Sbjct: 91  RERSLILILDHLQDPFNVGAILRTCCAFEVDGVILPKDKSAPLNHEVTLKSSQGYSLNIN 150

Query: 189 YIRISNLTDALQKMHS---WGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            + +SNL +A+ K+ +   W + T IG ++ S K +E     DK ALI+G+EGKG+    
Sbjct: 151 TVEVSNLNNAITKLKNRGYWVYSTEIGPNTKSFKEVEYA---DKCALIMGSEGKGVSKIL 207

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++ +    H+ M   + +LNVS AA + +
Sbjct: 208 RDNSDVKVHIPMKNNVNSLNVSVAAGIII 236


>gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
 gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
          Length = 363

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 8/180 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLL----SPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSA 154
           +D++ G  A HQGLAL   P         L   R+S   LL+ LD V DP N+GA++RSA
Sbjct: 175 LDRMCGT-APHQGLALVVPPFRYAHPDDLLARARSSPPGLLVALDGVTDPRNLGAVVRSA 233

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G++  +R +   +A   K+++GA   +P  R +NL   L    + G   +GL++
Sbjct: 234 AAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLARTLVSYAAGGQFVVGLAA 293

Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           DS+  +++  +  D + L++G+EG+GL    ++       + M G +++LN   AA + L
Sbjct: 294 DSEVSIDELTMATDPLVLVIGSEGRGLSRLVEQRCDVRVRIPMAGAVESLNAGVAAGITL 353


>gi|119716827|ref|YP_923792.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119537488|gb|ABL82105.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 267

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 8/193 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIG 148
           P   V     +++ G   VH+G   +LE  PL  P++D+V   ++ ++VL+ + D  NIG
Sbjct: 78  PCYVVSAALAEEVTGFH-VHRGALASLERRPL--PSVDSVLSGARSVLVLEDIVDHTNIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RS  A   D ++   R +        K A GA+  +P+ R+ +   AL ++ + GF 
Sbjct: 135 AIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFAVPWTRLPDWYGALPELSAAGFT 194

Query: 209 TIGLS-SDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           T+ L+ +    P+E  +   DK+AL+LG+EG GL P+ ++ A   A + M   I +LNV+
Sbjct: 195 TVALTLATDAVPIESAVAGLDKVALVLGSEGHGLSPRWEQAADRRAIIPMREGIDSLNVA 254

Query: 267 NAAAVALYITQNH 279
            A AVA Y+T   
Sbjct: 255 AATAVACYVTARR 267


>gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 313

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 87/172 (50%), Gaps = 8/172 (4%)

Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P        L+          L++ LD V DP N+GA++RS  AF   G++
Sbjct: 135 HQGLVLQVPPYEYAHAEDLAAAAYDDGADPLIVALDGVTDPRNLGAVVRSVSAFGGHGVL 194

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQ 222
             +R +   +A   K+++G     P  R +NLT AL+     G   +GL++D +  + + 
Sbjct: 195 VPERRAAGMTAGAWKTSAGTAARTPVARCTNLTRALEAYRKQGIVVVGLAADGEHEIGDL 254

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E     +A+++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 255 EALGGPVAIVVGSEGKGLSRLVGETCDYRVRIPMPGGAESLNAGVAAGIVLY 306


>gi|328951303|ref|YP_004368638.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451627|gb|AEB12528.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 240

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 13/240 (5%)

Query: 48  NLFLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            + +YG + V  AL     R+++     +  L R    + +   F    VP   +D++V 
Sbjct: 4   GMRIYGRNPVLEALREGRVRRVWVARGVERWLVRQLEASGVELVF----VPRIELDQMV- 58

Query: 107 KEAVHQGLALETAPLLSPTLDA-VRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSC 159
           +   HQG+  E   +     +A +R ++      LL+++D V DP N GAILR+A A   
Sbjct: 59  RTTRHQGVVAEVEGVAFADEEAPLRRARERGEPPLLVLVDGVTDPRNFGAILRTAEALGA 118

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+++ +R S   S V  K+++GA   IP +R+ NL   ++ +   G    G +  ++K 
Sbjct: 119 HGVVSEERRSAPLSPVAVKASAGAAHRIPVVRVKNLPRYIEWLKGLGVWVYGTAGQAEKT 178

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +      +AL++G+EG+G+R   +E    +  + + G  ++LNV+ A  +AL+    H
Sbjct: 179 LAELDYARPLALVVGSEGEGMRRIVREHCDELVRIELRGETESLNVAVALGIALHWAVQH 238


>gi|224824690|ref|ZP_03697797.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
           2002]
 gi|224603183|gb|EEG09359.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
           2002]
          Length = 251

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 9/232 (3%)

Query: 50  FLYGVHTVSAAL-NNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H V+A L  NP    +I+     ++A A+   D        +  V    +D + G
Sbjct: 6   LIHGFHAVNARLWQNPKSLLEIWLAGGRQDARAQAVLDKAAAENIKLHIVDKARLDSMSG 65

Query: 107 KEAVHQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+     A  +   L   L+ +    LL++LD V DPHN+GA LR A A     
Sbjct: 66  N-ARHQGVVAMIDASRSYVSLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S + +A ++K A GA E +PYI ++NL   L+ +   G    G + ++   L 
Sbjct: 125 VIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  +A ++G+EG+G+R  T+E    +  + M G +++LNVS ++ + L
Sbjct: 185 HFDAAGPLAWVMGSEGEGMRRLTREHCDVLVSIPMFGSVESLNVSVSSGMVL 236


>gi|256786299|ref|ZP_05524730.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
 gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
 gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
          Length = 314

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L++   D   +  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 136 HQGLVLQVPPYEYAHPEDLVAAAHDEGTDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 194

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R +   +A   K+++G     P  R +NLT AL++    G   +GL++D +  L  
Sbjct: 195 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGD 254

Query: 223 EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               D  + +++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 255 LAALDGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLY 307


>gi|307326969|ref|ZP_07606159.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           violaceusniger Tu 4113]
 gi|306887267|gb|EFN18263.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           violaceusniger Tu 4113]
          Length = 316

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQG+ L+  P        L +   D   +  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 138 HQGVVLQVPPYEYAHPEDLSAAAFDEGEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 196

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R +   +A   K+++G     P  R +NLT  L+     G   +GL++D +  L+ 
Sbjct: 197 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRTLEAYQKAGLTVVGLAADGEVELQD 256

Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E  +  + +++G+EGKGL     ET      + MPG  ++LN   AA V LY
Sbjct: 257 VEALDGPLVIVVGSEGKGLSRLVGETCDLRVRIPMPGGAESLNAGVAAGVVLY 309


>gi|330837615|ref|YP_004412256.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
           DSM 17374]
 gi|329749518|gb|AEC02874.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
           DSM 17374]
          Length = 258

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 25/243 (10%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-GK 107
           + G H +  AL   S    ++         ARL+  A L     VK +    +D++V G 
Sbjct: 5   ITGAHAIEEALKQASAGSTLYIQRGMGEKGARLERLAQLTGRVAVKKLSAAELDRMVPGI 64

Query: 108 EAVHQGLALE--------------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +  H+G  ++              T      +L+  ++S L+MVLD + DPHN+GAILRS
Sbjct: 65  D--HRGAVMDLGSVRRGGGRANTTTVEDFLGSLEEGKDS-LVMVLDGITDPHNLGAILRS 121

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-- 211
           A  F  D ++  +R S   +  +A+ +SGA +++P   ++N+T  L  M   GF   G  
Sbjct: 122 ADQFGVDLVVVPERRSAQANETVARVSSGASQYVPTAVVTNITSTLTMMKDHGFWIYGAD 181

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++ +S + +E      +  +++G+EG G+    +E    +  + M G I +LNVS AA +
Sbjct: 182 MNGESSETIE---FTGRCIIVMGSEGDGMSRLVRENCDFIVSIPMQGHIDSLNVSVAAGI 238

Query: 272 ALY 274
            +Y
Sbjct: 239 LMY 241


>gi|163749298|ref|ZP_02156547.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
           KT99]
 gi|161331017|gb|EDQ01943.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
           KT99]
          Length = 251

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD V DPHN+GA LR+A A    G+I  +  S   +  ++K A GA E +P  +++
Sbjct: 103 FLLILDGVTDPHNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVT 162

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++ +   G   +G + ++++ L +      +A+ +G+E KGLR  T+E+  S+  
Sbjct: 163 NLARTMKSLQDKGIWIVGAAGEAEQDLYKADLKGSLAIAMGSEDKGLRRLTRESCDSLVS 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LNVS A  V L+
Sbjct: 223 IPMTGSVSSLNVSVATGVCLF 243


>gi|52783332|sp|Q9RED7|RLMB_BURSP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|6687040|emb|CAB64790.1| YjfH protein [Burkholderia sp.]
          Length = 247

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 87/153 (56%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L   LD +    LL+ LD V DPHN+GA LR A       +I  +R +   +A  AK+A+
Sbjct: 85  LETLLDTIEGQPLLLALDGVTDPHNLGACLRVADGAGAHAVIAPRRRAAGLTAAAAKAAN 144

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA E +PY+ + NL  AL+ + + G Q IG + D+   L     +  +AL++GAEG G+R
Sbjct: 145 GAAETVPYLTVINLARALRALKNAGIQVIGTADDATTSLFDIQLDGALALVMGAEGAGMR 204

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             T+E    +  + + G +++LNVS A+ + L+
Sbjct: 205 RLTREACDEVVRIPLAGHVQSLNVSVASGICLF 237


>gi|149907739|ref|ZP_01896486.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
 gi|149809409|gb|EDM69338.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
          Length = 250

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 114/239 (47%), Gaps = 16/239 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            ++G+H V + L +   +  ++ A K    + L  L  + N      V+ V   T+DK  
Sbjct: 5   LIFGIHAVKSLLEHEPERFIEVYALKGREDDRLTPLIEELN-DIGISVQLVNRNTLDKKC 63

Query: 106 GKEAVHQGL---ALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAV 155
                H G+     E   L    LD + N         LL++LD V DPHN+GA LRSA 
Sbjct: 64  DG-GRHNGVLARVKEGKKLNESDLDTLLNRLEEKEQHPLLLILDGVTDPHNLGACLRSAD 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S   ++V+ K A GA E +P I ++NL   ++++       +G + +
Sbjct: 123 AAGVHAVIVPKDKSVQLTSVVRKVACGAAETVPLIAVTNLARTMRELQDRRIWIVGTAGE 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + L Q      +A+ +GAE KGLR  T+E    +  + M G + +LNVS A  + L+
Sbjct: 183 ATQDLYQPKLTGPLAIAMGAEEKGLRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 241


>gi|268317136|ref|YP_003290855.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
           DSM 4252]
 gi|262334670|gb|ACY48467.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
           DSM 4252]
          Length = 252

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 108/198 (54%), Gaps = 13/198 (6%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-----------LSPTLDAVRNS-QLLM 136
           H  PV+ VP   +D++    AVHQG+    AP+           ++P+ +AVR    LL+
Sbjct: 49  HGVPVQMVPKARLDRLAAG-AVHQGVVAFVAPVRYRTLEELLDEVAPSPEAVRERLPLLV 107

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            LD + DPHN GAILR+A A    G++  + +    +A   K+++GA   IP  R++NLT
Sbjct: 108 ALDQIEDPHNYGAILRTAAAAGVAGVLVPRHHMAPLNAAALKASAGAALRIPIARVTNLT 167

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            AL+ + + GF   G S   +  + +   +  + L+LG EG+GLRP   +    +  + +
Sbjct: 168 RALESLKAHGFWVAGASPSGEVSVWEMDWHRPLVLVLGNEGRGLRPGVAQACDLLVSIPL 227

Query: 257 PGIIKALNVSNAAAVALY 274
            G +++LNVS AA + L+
Sbjct: 228 RGPVESLNVSVAAGILLF 245


>gi|159900290|ref|YP_001546537.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893329|gb|ABX06409.1| RNA methyltransferase, TrmH family, group 3 [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 246

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 37/249 (14%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPP 98
            LYG + V  AL    RK+ +LL              N +AR            V  V  
Sbjct: 3   LLYGRNAVLEALRANRRKLGRLLIADGIKEGESMQAINTIAR-------ERRMQVAKVQR 55

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAIL 151
             +DK     A HQG+ALE        +D +      R  Q L+++ DH+ DP NIG ++
Sbjct: 56  SELDKRTAG-ANHQGIALECGAYPYVEVDDIIELARERGEQPLILIFDHLQDPQNIGTLM 114

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      GII   R S S +  +  +++GA+EH+   +I+N+   ++ +  +     G
Sbjct: 115 RTAEIVGAHGIIFPDRRSASITPAVINASAGAVEHLYVAQITNIAQTIKHLQEYNIWVAG 174

Query: 212 LSSDSKKPLEQEIKNDK------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           +  D     E+ +  DK      +AL++GAEG GL   T+E    +  L M G + +LN 
Sbjct: 175 VEDD-----ERAVDFDKANLRGALALVIGAEGPGLARLTRERCDLLVRLPMRGNVASLNA 229

Query: 266 SNAAAVALY 274
           + A ++ LY
Sbjct: 230 ATAGSIILY 238


>gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614]
 gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp.
           JS614]
          Length = 314

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 9/190 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPH 145
           ++ V    +D++ G  AVHQGLA    P         LDA   S    L++ LD V DP 
Sbjct: 119 IQEVSRGELDRMTGG-AVHQGLAARIPPYEYAHPDDLLDAAAESGAPPLIVALDSVTDPR 177

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RSA  F   G++  +R S   +A   K+++GA   +P  +  NL   L+     
Sbjct: 178 NLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAAARLPVAQTVNLVRQLKAYQEA 237

Query: 206 GFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   +GL++D    L + ++ +  + +++G+EG GL     ET   +  + M   +++LN
Sbjct: 238 GCMVVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRLVSETCDQLVSIPMANQLESLN 297

Query: 265 VSNAAAVALY 274
              AA+VALY
Sbjct: 298 AGVAASVALY 307


>gi|22298586|ref|NP_681833.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22294766|dbj|BAC08595.1| tll1042 [Thermosynechococcus elongatus BP-1]
          Length = 295

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 24/241 (9%)

Query: 50  FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFP--------VKTVPPQ 99
            LYG H V +AL +  P  +I+        +  L +D                + TV P+
Sbjct: 45  LLYGRHAVLSALESGRPCNRIW-------VIPSLRYDPRFHQRLNEAKQQGAIIDTVTPE 97

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153
            +D++  +   HQG+A++ A     +L+      A  N  +L+  D + DP N+GA++R+
Sbjct: 98  RLDQLC-QRGRHQGIAIQVAAYNYWSLEDLLAKAATVNQPVLLAADGITDPQNLGAMIRT 156

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  +R +   +A +AK+A+GALE++P  R+ NL  AL+ + + G+   GLS
Sbjct: 157 AEALGMQGVIIPQRRAVGITATVAKAAAGALEYLPVARVINLNQALETLKAAGYWIYGLS 216

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                PL +   +     ++G+EG+G+  +TQ+    +  + + G   +LN S A  +AL
Sbjct: 217 EHGAVPLPKITFDRPTVFVVGSEGEGISLQTQKHCDEIVAIPLAGRTNSLNASVAVGIAL 276

Query: 274 Y 274
           Y
Sbjct: 277 Y 277


>gi|326329912|ref|ZP_08196227.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
 gi|325952303|gb|EGD44328.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
          Length = 267

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 129/262 (49%), Gaps = 22/262 (8%)

Query: 29  DYKKMQSFN-QKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           DY+ ++    +KS  +S  E LFL  G   V  A+         L+A K       W   
Sbjct: 17  DYRDLRDVELRKSLESS--EGLFLAEGEKVVRRAVTGGFEPRSFLMAPK-------WLDG 67

Query: 87  LPHPFPVKTVPPQTIDKIVGKEA----VHQGL--ALETAPLLSPTLDAV-RNSQLLMVLD 139
           L         P   + +   +E     VH+G   +L+  PL  P++++V   ++ ++VL+
Sbjct: 68  LADVLESTDAPCYVMSEKAAEEVTGFHVHRGALASLKRRPL--PSVESVLEGARSVLVLE 125

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GAI RS  A   D ++   R +        K A GA+  +P+ R+ +  +AL
Sbjct: 126 DIVDHTNVGAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFALPWTRLLDWYEAL 185

Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMP 257
             + + GF T+ L+ +D    +E+ ++  DK+AL+LG+EG GL P+ Q+ A   A + M 
Sbjct: 186 PSLSAAGFTTVALTLADDAVDIEKAVEGVDKVALVLGSEGHGLSPRWQQAADRRAIIPMS 245

Query: 258 GIIKALNVSNAAAVALYITQNH 279
             I +LNV+ A AVA Y+T   
Sbjct: 246 AGIDSLNVAAATAVACYVTARR 267


>gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA2]
 gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL046PA2]
 gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA1]
 gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA2]
 gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL063PA1]
 gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA3]
 gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA2]
 gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL072PA2]
 gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA2]
 gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA3]
 gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL027PA2]
 gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA3]
 gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL072PA1]
 gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL096PA3]
 gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL013PA2]
 gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL020PA1]
 gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266]
          Length = 318

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 11/183 (6%)

Query: 101 IDKIVGKEAVHQGLALE--------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +D++ G  + HQG+AL            L++      R   L++ LD V DP N+GAI+R
Sbjct: 128 LDRMTGG-SNHQGVALRLPEYEYATVGDLIAAGTQTYRGG-LVVALDKVTDPRNLGAIIR 185

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   G++   R S S +A   K+++GA   IP    +NL  AL K  + G+  +GL
Sbjct: 186 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGL 245

Query: 213 SSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           + ++          D  + +++G+EG GL   T+++   +A + +   +++LN S AA++
Sbjct: 246 AGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASI 305

Query: 272 ALY 274
           ALY
Sbjct: 306 ALY 308


>gi|205372087|ref|ZP_03224904.1| 23S rRNA methyltransferase [Bacillus coahuilensis m4-4]
          Length = 246

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 106/186 (56%), Gaps = 10/186 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQ----LLMVLDHVNDPHNIG 148
           VP + +D++V     HQG+  + A     +LD   A+  S+    L+++LD + DPHN+G
Sbjct: 53  VPKKKMDQMVSN---HQGVVAQVAAYQYSSLDDMFALAESRGETPLVLLLDELEDPHNLG 109

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I+R+A A    GII  KR +   +A +AK+++GA+EHIP  R++NL+  + ++   G  
Sbjct: 110 SIMRTADAVGAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLSQTIDELKERGIW 169

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G  +  K+   Q   +  + L++G+EGKG+    +E    +  L M G + +LN S A
Sbjct: 170 VTGTDAKGKQDYRQMDASMPLCLVIGSEGKGMSRLVKEKCDFLVQLPMRGHVTSLNASVA 229

Query: 269 AAVALY 274
           A++ LY
Sbjct: 230 ASLLLY 235


>gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK187]
 gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK137]
 gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK187]
 gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK137]
 gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL013PA1]
 gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL074PA1]
 gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA1]
 gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA2]
 gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL083PA1]
 gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL025PA1]
 gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL059PA1]
 gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL063PA2]
 gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL007PA1]
 gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL056PA1]
 gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL086PA1]
 gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA4]
 gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA1]
 gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA3]
 gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL067PA1]
 gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL027PA1]
 gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA1]
 gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL082PA1]
 gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA1]
 gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL053PA1]
 gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL045PA1]
 gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA1]
 gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL053PA2]
 gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL078PA1]
 gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL038PA1]
 gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL059PA2]
 gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL046PA1]
 gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL030PA2]
 gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL096PA2]
 gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL097PA1]
 gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL043PA1]
 gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL043PA2]
 gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA3]
 gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL083PA2]
 gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL092PA1]
 gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA1]
 gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL025PA2]
 gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL099PA1]
          Length = 318

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 11/183 (6%)

Query: 101 IDKIVGKEAVHQGLALE--------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +D++ G    HQG+AL            L++      R   L++ LD V DP N+GAI+R
Sbjct: 128 LDRMTGGSN-HQGVALRLPEYEYATVGDLIAAGTQTYRGG-LVVALDKVTDPRNLGAIIR 185

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   G++   R S S +A   K+++GA   IP    +NL  AL K  + G+  +GL
Sbjct: 186 SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGL 245

Query: 213 SSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           + ++          D  + +++G+EG GL   T+++   +A + +   +++LN S AA++
Sbjct: 246 AGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASI 305

Query: 272 ALY 274
           ALY
Sbjct: 306 ALY 308


>gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
          Length = 208

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 97/183 (53%), Gaps = 11/183 (6%)

Query: 101 IDKIVGKEAVHQGLALE--------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +D++ G    HQG+AL            L++      R   L++ LD V DP N+GAI+R
Sbjct: 18  LDRMTGGSN-HQGVALRLPEYEYATVGDLIAAGTQTYRGG-LVVALDKVTDPRNLGAIIR 75

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   G++   R S S +A   K+++GA   IP    +NL  AL K  + G+  +GL
Sbjct: 76  SAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGL 135

Query: 213 SSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           + ++          D  + +++G+EG GL   T+++   +A + +   +++LN S AA++
Sbjct: 136 AGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASI 195

Query: 272 ALY 274
           ALY
Sbjct: 196 ALY 198


>gi|269792462|ref|YP_003317366.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100097|gb|ACZ19084.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 256

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 13/195 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----------LSPTLDAVRNSQLLMVLDH 140
            P + V  + +D++VG  + HQG+    +P+          L+   D V    LL V+DH
Sbjct: 55  IPFQEVDGKVLDRMVGTSS-HQGVVARVSPVGILKLEDLYRLAGASDPVAAFALL-VVDH 112

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DPHN+GA++R+A A     ++   R     + V+ K+++GA   +P I + N++ A++
Sbjct: 113 VEDPHNLGAMIRTAEAAGFSAVLFPSRREALPTGVVVKASAGAALRVPLIMVGNVSQAIR 172

Query: 201 KM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           ++    G   +GL +  +  +  E    +IAL++G+EGKGL          +  + M G 
Sbjct: 173 RVKEDLGLWAVGLEAQGRASVFDERLPPRIALVVGSEGKGLSRVASAACDDILMIPMMGA 232

Query: 260 IKALNVSNAAAVALY 274
             +LNVS AA + +Y
Sbjct: 233 SGSLNVSVAAGIVMY 247


>gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
           PHSC20C1]
 gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
           PHSC20C1]
          Length = 345

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 8/182 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +D++ G ++VHQGLAL+  P        L   ++A     LL+ LD + DP N+GAI+RS
Sbjct: 151 LDRLAGFDSVHQGLALKVPPYEYAHPMELLDKVEARGQVPLLVALDGITDPRNLGAIVRS 210

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             AF   G+I  +R S   +A   K+++GA    P    +NLT  +++    G   +GL 
Sbjct: 211 VAAFGGQGVIVPQRRSVGMTASAWKTSAGAAARTPVAMANNLTQMIKEYKKRGVFVLGLD 270

Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            D    L    +  + + +++G+EGKGL     E   ++  + +    ++LN   AA+V 
Sbjct: 271 GDGDVSLPSLPLAKEPVLIVVGSEGKGLSRLVTENCDAIVSIPISASTESLNAGIAASVT 330

Query: 273 LY 274
           LY
Sbjct: 331 LY 332


>gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 245

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 93/169 (55%), Gaps = 5/169 (2%)

Query: 111 HQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+     A+E   L     ++   + LL++ D V DPHN+GAI+R+A       ++  
Sbjct: 66  HQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAVLIP 125

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           KR++   +A +AK+++GA+E IP +++ N+T  ++++   GF  +G   +  + L +   
Sbjct: 126 KRHNAPINATVAKTSAGAVEQIPLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYEADL 185

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L++G EGKG+    +E    +  + M G + +LN S AAA+ +Y
Sbjct: 186 TIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMY 234


>gi|325972623|ref|YP_004248814.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
 gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
          Length = 251

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 1/144 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +S L++VLD + DP N+GAILRSA  FS   +I  +R S   +  + K +SGA +++P  
Sbjct: 100 DSALVLVLDEITDPQNLGAILRSADQFSVSLVIIPERRSAQANTTVVKVSSGAAQYVPLA 159

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++N+   ++ + S GF   G +S S + + + +   +  L++G EGKG+   TQ+    
Sbjct: 160 TVTNMNREIEYLKSQGFWVYG-ASMSGQAVYKTVFPKRTVLVMGNEGKGIGQLTQKLCDH 218

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           M  + M G I +LNVS A  + LY
Sbjct: 219 MVTIPMSGHIDSLNVSVATGILLY 242


>gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 248

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 14/236 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVG 106
            ++G++ VS AL    R+++++ A +     RL+    L       ++ +  + +D++  
Sbjct: 4   LVFGINAVSEALKG-QRRVYKIYAQRERQDKRLEEILTLAREKQLKLQYLEKKKMDELC- 61

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFS 158
            E  HQG+  E        L   L+ ++  +     L++LD + DP N+GAI+R+A    
Sbjct: 62  -EGKHQGIIAEVERYPYADLGQVLEKLQAQKEKPPFLLLLDGIEDPQNLGAIIRTAECAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DGII     S   +  +++ ++GA+EH+  IR +NL + ++ +   GF  +G  + +++
Sbjct: 121 VDGIIIPSHKSAEVNPTVSRVSAGAVEHMAIIRENNLVNTIKYLKQEGFWVLGADAKARQ 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                      AL++G EG+G+R   +E    +  + M G + +LN S AAA+ +Y
Sbjct: 181 SYFNTSIPSPTALVIGGEGQGIRRLVRENCDILVRIPMFGQLNSLNASVAAALLIY 236


>gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+ +PL       L P L       L + LD V DP N+GAI+RSA  F   G++
Sbjct: 372 HQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVV 431

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222
              + S   S V++K+++G+LE +      N+   L      G+Q +G S   +  PL +
Sbjct: 432 LCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQVLGGSVSPRAIPLNE 491

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVALY 274
                   L+LG+EG GLRP  + + T +  + +PG       +++LNVS AA V L+
Sbjct: 492 ISPGAPTILVLGSEGTGLRPLVERSCTQL--IRIPGNIPSFLAVESLNVSVAAGVLLH 547


>gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG6]
 gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6]
          Length = 250

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 15/238 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPPQTIDKI 104
            LYG + V  AL   +R+  + L   N +      A +         PV+ V  Q +DK 
Sbjct: 4   LLYGRNAVREALR-ANRRTIKRLVVSNGVQETGIIAEIIKLAEQIGVPVQRVERQQLDKQ 62

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVL-DHVNDPHNIGAILRSAVAF 157
           + ++A HQG+ LET       L+      A RN   L++L DH+ DP NIG +LR+A   
Sbjct: 63  L-RDANHQGVMLETNEYPYVELEDCLAYAAERNEPPLLLLLDHLQDPQNIGTLLRTAEVV 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+    R +   +  +  ++SGA EH+  + + NL   +  +   G   +GL  D +
Sbjct: 122 GVHGVAIPGRRAAEITPAVVNASSGATEHLRVVLVGNLAQTIATLQREGVWVVGLEDDEQ 181

Query: 218 -KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + L+    N  +AL++GAEG GL    +E    +  L M G I +LN S A ++ LY
Sbjct: 182 AQDLDAADLNLPLALVVGAEGPGLARLVRERCDFLVRLPMAGQIASLNASVAGSITLY 239


>gi|325288493|ref|YP_004264674.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963894|gb|ADY54673.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 257

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 7/189 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPH 145
           P + V    +DK  G +     +A   A     T D +  ++       ++VLD + DPH
Sbjct: 51  PYQFVERAVLDKFSGGDKHQNIVAFTAAREYVETEDILNIARQKGEDPFILVLDELEDPH 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+LR+A A    GII   R S   +  +AK+++GA+E++P  R+ NL  AL+++   
Sbjct: 111 NLGALLRTADAAGVHGIIIPTRRSVGLTPAVAKTSAGAIEYVPVARVGNLVQALKQLKKA 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  +  +     ++   ++ L++G E KGL    +ET   +  L M G + +LN 
Sbjct: 171 GCWVTGAEAGGRDVFSADLSGPRV-LVVGGEDKGLGRLIKETCDEIVSLPMLGKMSSLNA 229

Query: 266 SNAAAVALY 274
           S A ++ +Y
Sbjct: 230 SAAGSILMY 238


>gi|193212230|ref|YP_001998183.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
           NCIB 8327]
 gi|193085707|gb|ACF10983.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
           NCIB 8327]
          Length = 257

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 1/154 (0%)

Query: 122 LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L   L A RNS  LL++L  + DPHN+GAI+R+A A + D +I  +      SA + K++
Sbjct: 96  LDEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTAEAVAADSVIMIEGKGAPISATVHKAS 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +GAL H+   ++ +L   L  +H  GF  +    +++             L++GAEGKGL
Sbjct: 156 AGALSHMRVCKVKSLVKTLDLLHERGFSIVAADMEAEHNHTDIDWKRPTVLVMGAEGKGL 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +T++    +  + M G +++LNVS AA V LY
Sbjct: 216 GSETRKRCDQIVRIPMAGCVESLNVSVAAGVMLY 249


>gi|320451443|ref|YP_004203539.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
           SA-01]
 gi|320151612|gb|ADW22990.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
           SA-01]
          Length = 238

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 9/172 (5%)

Query: 111 HQGLALET-----APLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGLA E      APL    L  +A +   LL+ LD + DP N GA++RSA+A    G++
Sbjct: 59  HQGLAAEVEEPRYAPLEEAFLLAEARKELPLLVFLDGITDPRNYGAMIRSALALGAHGVV 118

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ 222
           + +R S   S +  K+++GA   +P +++ NL  AL+++   G    GL    +K P E 
Sbjct: 119 SEERRSAPLSPLALKASAGAALKLPVVKVKNLPRALEEVKQKGLWVYGLDVRGAKTPREL 178

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +   +AL+LG+EG+G+R   +E+   +  + M    ++LN S A  +ALY
Sbjct: 179 DFQRP-LALVLGSEGEGMRRLVRESCDELFRIPMREEAESLNASVALGIALY 229


>gi|289705925|ref|ZP_06502302.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
           SK58]
 gi|289557353|gb|EFD50667.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
           SK58]
          Length = 329

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNI 147
           +D++ G EAVHQG+ L+  P       A             +R   LL+ LD + DP N+
Sbjct: 133 LDRLSG-EAVHQGIVLQIPPYEYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNL 191

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+  AF  DG+I  +R S   +A   ++++GA   +P  +  NL   L  +H  G+
Sbjct: 192 GAIIRAGSAFDADGVIVPERRSVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGY 251

Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +GL       L    +  + + L++GAEGKGL    +E    +  + +   +++LN S
Sbjct: 252 FVLGLDGGGDVSLPGLALATEPLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNAS 311

Query: 267 NAAAVALY 274
            A  ++LY
Sbjct: 312 MAVGISLY 319


>gi|218779780|ref|YP_002431098.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 249

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 14/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
            LYG+H V  AL    R+   +  +++       D           VKT P Q+  K  G
Sbjct: 5   LLYGMHPVREALLAGKRQFQAVYVSESRTGEGKEDILSLARERGIEVKT-PDQSFFK--G 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           ++   QG+A   +      L+ +            +++D +NDP N GA++R+A+    +
Sbjct: 62  QDRGGQGVAARVSLFKPIALELLVKKAGGEQPLFFLLMDEINDPQNCGALMRTALCAGVN 121

Query: 161 GIIT-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           G+I   KR SP   AV +K+++GALEH+P  R+ NL  ++Q +   G    GL + +   
Sbjct: 122 GVIMPDKRSSPLSPAV-SKASAGALEHMPVARVVNLVRSMQYLKDQGVWFFGLDARASGT 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +       A+++G EGKGLRP  ++    +  +   G + +LN S A A+++Y
Sbjct: 181 VWEADLTGPAAVVVGNEGKGLRPLVRKECDQLVSIPQAGPLGSLNASVAGALSMY 235


>gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)]
 gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor
           A3(2)]
          Length = 314

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L++   D   +  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 136 HQGLVLQVPPYEYAHPEDLVAAAHDEGIDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 194

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R +   +A   K+++G     P  R +NLT AL++    G   +GL++D +  L  
Sbjct: 195 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGD 254

Query: 223 EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               D  + +++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 255 LAALDGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLY 307


>gi|327400489|ref|YP_004341328.1| TrmH family RNA methylase [Archaeoglobus veneficus SNP6]
 gi|327315997|gb|AEA46613.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           veneficus SNP6]
          Length = 227

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 118/234 (50%), Gaps = 25/234 (10%)

Query: 51  LYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPF-PVKTVPPQTIDKIV 105
           +YGV++V  AL    + K++  LAT N    L R+   A +P  + P + +PP +     
Sbjct: 3   VYGVNSVVEALKAKKANKVY--LATGNRRDRLERMARRAGVPIVYVPKEKLPPDS----- 55

Query: 106 GKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                 QG+A + +P+    +D      +R +  L+ LD V DP N+GA +R+A  F C 
Sbjct: 56  ------QGVAADISPIRYHDVDYLIELCLRKNSFLLFLDGVEDPRNLGAAIRTAEFFGCA 109

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  KR +   +  + K ++GA  H+   R  N+T+AL+K   +G + IG   D +  +
Sbjct: 110 GVVIPKRRAVQVNETVVKVSAGAALHVSIAR-DNITNALKKAKKFGIKVIGAELDGEN-I 167

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E        AL++G E +G+    ++    +  +   G + +LN+S AA + +Y
Sbjct: 168 ENADLTPPAALVIGGEDRGISQPVRKLCDFLVKIPGRGKVGSLNLSVAAGILMY 221


>gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
           aerosaccus SK60]
 gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
           aerosaccus SK60]
          Length = 258

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 15/179 (8%)

Query: 111 HQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           HQG+ L+  P           L       R   LL+VLD + DP+N+GA LR+AVA    
Sbjct: 71  HQGVVLQARPAELQDEADLKYLVDKHQTERKPLLLLVLDQITDPNNLGACLRTAVAMGVS 130

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKP 219
            +I  K +S S +  +AK A GA+E +P+I+++NL   L  +   G    G +  D+ KP
Sbjct: 131 AVIIPKNHSSSITPAVAKVAVGAVELMPFIQVTNLARTLTDIKKQGVFVFGTALDDTAKP 190

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALY 274
           ++       +A+++G+EG G+R  T +T   + ++ MP    G I++LNVS A  + LY
Sbjct: 191 VQDCDLTGDVAIVMGSEGDGIRRLTADTCDQLVYIPMPGNEHGQIQSLNVSVATGMVLY 249


>gi|83591297|ref|YP_431306.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
           39073]
 gi|83574211|gb|ABC20763.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
           39073]
          Length = 246

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD V DPHN+GAILRSA A    G+I  +R     +A +A++A GA E++P  R++
Sbjct: 95  FLIMLDRVEDPHNLGAILRSAEAVGAHGVIIPRRRGVGLTAAVARAAVGAQEYVPVARVT 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   L+++   G   IG + D+ +          + L+LG+EG+GL P  +       H
Sbjct: 155 NLARTLEELKGKGLWAIGAAGDAGQEAFNADFTVPLVLVLGSEGRGLSPLVRSRCDFTVH 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L M G I +LNV+ AA V +Y
Sbjct: 215 LPMRGRINSLNVATAATVLMY 235


>gi|288554706|ref|YP_003426641.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288545866|gb|ADC49749.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
          Length = 249

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145
           ++  P + ++++V   + HQG+    A      +D +      R  +   ++LD + DPH
Sbjct: 50  IQNAPKKKLEQLV-DSSNHQGVVASIAAYEYAEMDDLFALAEKRGEEPFFLILDEIEDPH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A A    GII  KR +   +  +AK+++GA+E+IP +R++N+   +  +   
Sbjct: 109 NLGSIMRTADAAGAHGIIIPKRRAVGLTQTVAKASTGAIEYIPVVRVTNIARTMDDLKKR 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G  +       Q   +  I L++G+EGKG+    +E    +  + M G + +LN 
Sbjct: 169 GLWFAGTDAKGSADYRQASFDMPIGLVIGSEGKGISRLIKEKCDFLIQIPMVGQVTSLNA 228

Query: 266 SNAAAVALY 274
           S AA++ +Y
Sbjct: 229 SVAASLLMY 237


>gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 320

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 101/190 (53%), Gaps = 8/190 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLD---AVRNSQLLMVLDHVND 143
             V  VP   +D++ G   +HQGL L         +   +D   A  ++ L++ LD++ D
Sbjct: 117 ITVLEVPRIELDRMTGN-GMHQGLGLLVPEYQYVDVQDLIDRAHASSSTGLIVCLDNITD 175

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++RS  AF   G++  +R S S +AV  ++++G    +P  + +N+T AL++  
Sbjct: 176 PRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNMTRALKQFQ 235

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+Q +GL +     L+       + +++G+EGKGL     ET  ++  + M   +++L
Sbjct: 236 KEGYQVVGLDAGGDHTLDTYDGTTPVVVVVGSEGKGLSRLVSETCDTIMSIPMADNVESL 295

Query: 264 NVSNAAAVAL 273
           N S AA V L
Sbjct: 296 NASVAAGVVL 305


>gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1]
 gi|254800512|sp|A4T5L0|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
 gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum
           PYR-GCK]
 gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1]
          Length = 314

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 7/172 (4%)

Query: 109 AVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +HQG+AL+  P   +   D +R+++      LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 133 GLHQGIALQVPPYAYAHPDDLLRDAKSDAAPALLVALDNISDPRNLGAIVRSVAAFGGHG 192

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA    P  R +NL   L++    G Q +GL +     ++
Sbjct: 193 VVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQVVGLDAGGDTTID 252

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +        +++G+EGKGL    +E    +  + M G  ++LN S AA V L
Sbjct: 253 EIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIPMAGPTESLNASVAAGVVL 304


>gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM
           2032]
 gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus
           propionicus DSM 2032]
          Length = 269

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 99/173 (57%), Gaps = 4/173 (2%)

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +V +++  + L+LE   LL+   D  + +Q  ++VLD + DP N+G+ILRSA+A     +
Sbjct: 92  VVARQSEARLLSLED--LLAGITDEEQTTQARILVLDSLQDPRNVGSILRSALAAGFSRV 149

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLE 221
           I T+  S   +  +A++++GA+ H+   ++ NL DAL ++   GF   G ++  +  P+ 
Sbjct: 150 ILTRERSVPLTGTVARTSAGAVSHLRLCQVVNLVDALNRLKEQGFWIFGAIAEANAAPIY 209

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  I L++G+EGKG+RP  ++    +  + M     +LN S AAAV ++
Sbjct: 210 TTDFSGPICLVIGSEGKGIRPLVRKQCDVLVTIPMQASFNSLNASVAAAVIMF 262


>gi|254428391|ref|ZP_05042098.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
 gi|196194560|gb|EDX89519.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
          Length = 249

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 16/240 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTID 102
           L   G H V A L +    + +L      + R D        A       V+    + ++
Sbjct: 5   LMYSGFHAVEALLRHRPEAVLELFVQDTRVDRDDPRLAAMIQAAKDFGIAVQRARREVLE 64

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           K  G +  HQG+     P        L   LD    S LL++L++V DPHN+GA LRSA 
Sbjct: 65  KHAGPQ--HQGIVARARPRRPADESALLQWLDGKPASPLLLILENVTDPHNLGACLRSAD 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  +R +   + V  ++A GA E + Y  I NL   L ++   G   +G + +
Sbjct: 123 AAGVQAVIVPRRNAAGLTPVACRTAVGAAESLVYYEIGNLASLLDQLRDRGVWVVGTALE 182

Query: 216 SK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + + L      + +A+++GAEG GL+  T++    +  + M G +++LNVS A  V L+
Sbjct: 183 ERSESLFTFQPPESLAIVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLF 242


>gi|294101781|ref|YP_003553639.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
           colombiense DSM 12261]
 gi|293616761|gb|ADE56915.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
           colombiense DSM 12261]
          Length = 298

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 82/151 (54%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           PTL       LL+VLDH+ DPHN+GAI+R++ A     ++ +KR S      + K ++GA
Sbjct: 135 PTLKTKEGPILLVVLDHILDPHNLGAIIRTSEAAGATAVVYSKRRSALPGGTVVKVSAGA 194

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +P I ++N+   + ++   GF  +GL  ++ + L      DK +L++GAEG+GL   
Sbjct: 195 ALRVPMISVTNIAQTITRLQEEGFWVVGLDHNAPQSLWGATYPDKSSLVVGAEGEGLSRL 254

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +    +  + + G   +LN   AAA+ ++
Sbjct: 255 VAQRCDMLLRIPITGKTGSLNAGVAAALGMF 285


>gi|239916924|ref|YP_002956482.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
 gi|281414620|ref|ZP_06246362.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
 gi|239838131|gb|ACS29928.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
          Length = 329

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 15/188 (7%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNI 147
           +D++ G EAVHQG+ L+  P       A             +R   LL+ LD + DP N+
Sbjct: 133 LDRLSG-EAVHQGIVLQIPPYEYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNL 191

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+  AF  DG+I  +R S   +A   ++++GA   +P  +  NL   L  +H  G+
Sbjct: 192 GAIIRAGSAFDADGVIVPERRSVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGY 251

Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +GL       L    +  + + L++GAEGKGL    +E    +  + +   +++LN S
Sbjct: 252 FVLGLDGGGDVCLPGLALATEPLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNAS 311

Query: 267 NAAAVALY 274
            A  ++LY
Sbjct: 312 MAVGISLY 319


>gi|330718906|ref|ZP_08313506.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537]
          Length = 221

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 13/159 (8%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPH 145
           V++VP   +D+I  +   HQG+AL  A     TLD + +       +   ++LD + DPH
Sbjct: 58  VQSVPKSKLDEI-SEGGTHQGVALSVAAFQYATLDDLFDRAQEKSETPFFIILDGIEDPH 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+ILR+A A    G+I  KR +   +A +AK ++GA+EH+P +R++NL + +  +   
Sbjct: 117 NLGSILRTADAAGVHGVIIPKRRAVQLTATVAKISTGAIEHVPVVRVTNLANTVTTLKER 176

Query: 206 GFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           G    G  ++ +  + L+        AL++G EGKG+ P
Sbjct: 177 GLWIFGTDMAGEDYRHLD---ATGPTALVIGNEGKGISP 212


>gi|227495628|ref|ZP_03925944.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226830860|gb|EEH63243.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 322

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 21/273 (7%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           +H  K+ +   + KK Q+   ++R + +    N  + G + V  A++     I ++    
Sbjct: 46  AHKRKVEKEIAEKKKAQAEAHRTRTSIKIAAGNELIVGRNAVFEAVD-AGIDIIRVFLAG 104

Query: 76  NAL-ARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALET--------APLLSP 124
           NAL  R+            PV  V    ++   G E+ HQ + +E           LL  
Sbjct: 105 NALDERIGKVVRTATALGAPVLEVTKMDLENASG-ESAHQSIGIEVPEYDYCSAQDLLER 163

Query: 125 TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           T +   N+Q  L++ LD V DPHN+GA+LRS  AF   G++ ++R S S +A   K ++G
Sbjct: 164 TKE---NAQIPLIVALDQVTDPHNLGAVLRSGGAFGITGVLISERRSASVNAAAWKVSAG 220

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
           A   +P  R +NL  AL ++   G   +GL       L   ++    + ++ GAEGKGL 
Sbjct: 221 AAARVPVARETNLVRALGELKEAGCFVVGLDGGGDVSLRDLDLATGPLVVVTGAEGKGLS 280

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +ET   +  + +   +++LN + A  +ALY
Sbjct: 281 RLVRETCDQIVSIPISSAVESLNAAVATGIALY 313


>gi|323339372|ref|ZP_08079657.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
           ruminis ATCC 25644]
 gi|323093195|gb|EFZ35782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
           ruminis ATCC 25644]
          Length = 248

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 19/243 (7%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           Q  + F+ G H   AAL +     K+F     K+   +    A       V  VP   +D
Sbjct: 4   QKTDDFVIGRHPAMAALKSGQDINKVFVQSGLKSDAIQEIVSAARKRSIVVSQVPKTKLD 63

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ--LLMVLDHVNDPHNIGAILRSAV 155
            ++     HQG+ L  A      L+     A +  +    ++LD + DPHN+G+ILR+A 
Sbjct: 64  -LLSDGQNHQGVVLAVAAFQYAELEDLFEAAAKKGEDPFFLILDGIEDPHNLGSILRTAD 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR +   ++ +AK+++GA+E++P  R++NL   + ++ + G    G  +D
Sbjct: 123 AAGVHGIIIPKRRAVQLTSTVAKTSTGAVEYVPVCRVTNLAQTVDELKNRGLWIFG--TD 180

Query: 216 SKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            K    Q+ +N       AL++G EGKG+    ++    M  + M G +++LN S AA++
Sbjct: 181 MKG---QDFRNWDAKGPTALVIGNEGKGISSLLKKKCDEMLTIPMIGHVQSLNASVAASL 237

Query: 272 ALY 274
            +Y
Sbjct: 238 LIY 240


>gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
           thermophilum H-6-12]
 gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
           thermophilum H-6-12]
          Length = 241

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 108/196 (55%), Gaps = 13/196 (6%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPL-----LSPTLDAVRNSQLLMVLDHVNDP 144
           P+K V    I+K+VG  +  QG+   + + P      +  TL+   N  +++VLDH+ DP
Sbjct: 49  PIKYVERSVIEKMVGGNS--QGVLAIISSVPYREWEDIEKTLN---NKSVIVVLDHIQDP 103

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAI R++       I+  K  S   ++   K+++GAL +IP +R+SN+ + L+++  
Sbjct: 104 HNLGAIARTSEFAGASAIVIPKARSAGVTSASFKASAGALSYIPVVRVSNIANFLRELKK 163

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G+  +G   D++    Q      +AL++G+E +GL    +E+   +  +   G +++LN
Sbjct: 164 KGWFIVGADLDTENLYNQVNYRFPLALVVGSEDEGLHRIVKESCDLLVKIPSYGKVESLN 223

Query: 265 VSNAAAVALY-ITQNH 279
           VS A  + LY I ++H
Sbjct: 224 VSVALGIILYKIRESH 239


>gi|295103429|emb|CBL00973.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
           SL3/3]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 20/276 (7%)

Query: 24  RRNHRDYKKMQSFNQKSR---HTSQPE---NLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           R   +++KKM+  NQ  R      QP+      +YG + V+  L + S     L+A   A
Sbjct: 21  RPERKEHKKMEERNQPRRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEGMA 80

Query: 78  LARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------A 128
            A   +   L       VK V P  +  + G E+ HQG+A   + +   T++       A
Sbjct: 81  PAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKA 139

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++ D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P
Sbjct: 140 KGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLP 199

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++N+ + ++++   G        D    L +      IAL+LG+EG G+    ++  
Sbjct: 200 VARVANIGETIRRLKEQGVFVYCADMDGVS-LRKNNLTGPIALVLGSEGSGVSQLVKKLC 258

Query: 249 TSMAHLHM--PGI-IKALNVSNAAAVALYITQNHFA 281
             +  L M  PG  + + NVS AA + LY  Q+  A
Sbjct: 259 DGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294


>gi|160943055|ref|ZP_02090293.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445749|gb|EDP22752.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
           M21/2]
          Length = 297

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 20/276 (7%)

Query: 24  RRNHRDYKKMQSFNQKSR---HTSQPE---NLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           R   +++KKM+  NQ  R      QP+      +YG + V+  L + S     L+A   A
Sbjct: 21  RPERKEHKKMEERNQPRRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEGMA 80

Query: 78  LARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------A 128
            A   +   L       VK V P  +  + G E+ HQG+A   + +   T++       A
Sbjct: 81  PAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKA 139

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++ D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P
Sbjct: 140 KGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLP 199

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++N+ + ++++   G        D    L +      IAL+LG+EG G+    ++  
Sbjct: 200 VARVANIGETIRRLKEQGVFVYCADMDGVS-LRKNNLTGPIALVLGSEGSGVSQLVKKLC 258

Query: 249 TSMAHLHM--PGI-IKALNVSNAAAVALYITQNHFA 281
             +  L M  PG  + + NVS AA + LY  Q+  A
Sbjct: 259 DGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294


>gi|111115344|ref|YP_709962.1| rRNA methylase [Borrelia afzelii PKo]
 gi|110890618|gb|ABH01786.1| rRNA methylase [Borrelia afzelii PKo]
          Length = 246

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 85/141 (60%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT+++S  +++ + +++SGA +++  I ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKHSAKDNSTVLRTSSGASQYVKKITVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  +   GF         +   + +I + KIALILG EGKG+   T++ +  +  
Sbjct: 157 NINNTINFLKKHGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLTKQNSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +A + ++
Sbjct: 217 IPTSGKIDSLNVSVSAGILIF 237


>gi|32490927|ref|NP_871181.1| hypothetical protein WGLp178 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166133|dbj|BAC24324.1| yjfH [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 250

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 120/250 (48%), Gaps = 20/250 (8%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDK 103
           N  +YG+H +   + N S KI  +L  K+       +L   +N      +K V  + ++K
Sbjct: 2   NEIIYGIHVIEEFIKNKSNKILCILFLKSRKDIKFKKLILISN-EKNIKIKFVDKKFLNK 60

Query: 104 IVGKEAVHQGLA-------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I   +  HQG+        +   P L   L+  +N    ++LD + DP N+G+ +RSA  
Sbjct: 61  ITNNKK-HQGIVAYIKNSKILKEPFLLKMLENKKN-YFFLILDGIMDPRNLGSCIRSAYI 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F    +I  K  S   S+ + K ASG+L+ IP I ++NL   +  +  +  Q IG S  +
Sbjct: 119 FGVQAVIIRKNRSAKISSAVKKVASGSLDLIPLIYVTNLVRTINLLKKYNIQIIGTSRKA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA--LNVSNAAAVALY 274
           +  +  +     IA+++G+E  G+    +E   ++  L++P +     LN+S A  + ++
Sbjct: 179 QLDICNKKLKQSIAVVMGSENLGISRLVKENCDNI--LNIPTVKNNLPLNISVATGICIF 236

Query: 275 --ITQNHFAK 282
             I +N+  K
Sbjct: 237 EIIRKNYLNK 246


>gi|289522994|ref|ZP_06439848.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503537|gb|EFD24701.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 258

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 14/237 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
             YG H V A L     +  ++L ++    +L    +D    +  PV  V  +T+D++ G
Sbjct: 9   ICYGRHPVIALLEESPHRCHKILISEGINKKLVDDIYDRARKNGIPVLKVDNKTLDRVSG 68

Query: 107 KEAVHQGLA-------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+        L     L   +   +++ L++V D + DP+N+GAI+RSA  F  
Sbjct: 69  G-ASHQGVLAYISQGNLGDINQLIDRITEKKDNSLVVVADKIKDPNNLGAIIRSAEVFGA 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  KR S   S+ + KS++GA   +  + +SNL  A++++   G   +GL   + + 
Sbjct: 128 LGVIFPKRNSAYPSSAVHKSSAGASMRVMMVSVSNLVSAIKRLQENGMWVVGLDQRADRY 187

Query: 220 LEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L  E  I+  K+ L++G+E  G+ P        +  + M G   +LN + AA++ +Y
Sbjct: 188 LWDEPSIRG-KLTLVVGSEEAGISPIVARACDDIRSIPMFGKTGSLNAAVAASIGMY 243


>gi|309804548|ref|ZP_07698613.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808492|ref|ZP_07702391.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 01V1-a]
 gi|308165940|gb|EFO68158.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168320|gb|EFO70439.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 01V1-a]
          Length = 180

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 83/144 (57%), Gaps = 7/144 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN+G+ILR+A A   DGII  +R +   ++V+AK+++GA++++P +R++
Sbjct: 25  FLLMLDSIEDPHNLGSILRTADATGVDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVN 84

Query: 194 NL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           NL    D L+    W F T  +S D+    +      K  L++G EGKG+ P   +    
Sbjct: 85  NLVQTVDTLKDKGYWFFGT-AMSGDNYTNWDAR---GKCVLVIGNEGKGISPLLLKQMDQ 140

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G +++LN   A  + LY
Sbjct: 141 TLTIPMTGHVQSLNAGVATGILLY 164


>gi|170728541|ref|YP_001762567.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella woodyi
           ATCC 51908]
 gi|169813888|gb|ACA88472.1| RNA methyltransferase, TrmH family, group 3 [Shewanella woodyi ATCC
           51908]
          Length = 245

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 79/141 (56%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD V DPHN+GA LR+A A    G+I  +  S   +  ++K A GA E +P  +++
Sbjct: 98  FFLILDGVTDPHNLGACLRNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVT 157

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++ +   G   +G + ++   L +      +A+ +GAE KGLR  T+E+  S+A 
Sbjct: 158 NLARTMKSLQEKGVWIVGAAGEADSDLYKTDLKGPLAIAMGAEDKGLRRLTRESCDSIAS 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LNVS A  + L+
Sbjct: 218 IPMAGSVSSLNVSVATGICLF 238


>gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
 gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
          Length = 302

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 117/251 (46%), Gaps = 28/251 (11%)

Query: 45  QPENLFLYGVHTVSAALNN-PS--RKIF-------QLLATKNALA---RLDWD------- 84
           QPE   ++G+H V+  L   P   RK++         +A    LA   R+  D       
Sbjct: 42  QPEASLVWGIHPVTELLRRRPGLVRKLYLAGGRDDGRVAAIVELAASHRIPLDRAGLPPA 101

Query: 85  -ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A LPH     +  PP  +      E + +  AL  AP  SP   A     LL+VLD + 
Sbjct: 102 AAELPHQGVAARVAPPSPLSL---AELLQRLPALGPAPASSP---AAGPPPLLLVLDSLQ 155

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GA+LRSA AF  DG+I  K  S   S  + K+A+G    +   R +NL  AL  +
Sbjct: 156 DPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLAGALGTL 215

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF   G S ++   L +        L+LG E KG+RP  ++    +  + +   +++
Sbjct: 216 KKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKKHCDFLLAIPLAAGVES 275

Query: 263 LNVSNAAAVAL 273
           LNVS AA + L
Sbjct: 276 LNVSVAAGIML 286


>gi|121591825|ref|ZP_01679008.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121546309|gb|EAX56591.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
          Length = 213

 Score = 92.8 bits (229), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 26/218 (11%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V+A L  +P+R +           +LL   N L RL           ++ +
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150
             + +D    + A HQGL     P   L    LD   A     LL+VLD V DPHN+GA 
Sbjct: 55  SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           G + ++   + Q      +A+++GAEG G+R  T+ET 
Sbjct: 174 GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETC 211


>gi|239930484|ref|ZP_04687437.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 313

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQGL L+  P        L++   D   +  L++ LD V DP N+GA++RS  AF   G+
Sbjct: 135 HQGLVLQVPPYEYAHPEDLVAGAHDEDEDP-LIVALDGVTDPRNLGAVVRSVSAFGGHGV 193

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           +  +R +   +A   K+++G     P  R +NLT AL+     G   +GL++D +  + E
Sbjct: 194 VVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAGIVVVGLAADGEAEIGE 253

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     + +++G+EGKGL     ET      + MPG  ++LN   AA + LY
Sbjct: 254 LDALEGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNAGVAAGIVLY 306


>gi|315925068|ref|ZP_07921285.1| protein-export membrane protein SecF [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621967|gb|EFV01931.1| protein-export membrane protein SecF [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 265

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 8/168 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+A  TAP    +L AV            ++V+DHV DPHN GAI+RSA      G+I
Sbjct: 85  HQGIAAVTAPFAYQSLSAVLAKAEAAGEDAFVVVMDHVLDPHNFGAIVRSANLCGAHGVI 144

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
              R S S +AV  K+++GA+     +++ NL   L+ + + GF  +  +  +  P    
Sbjct: 145 FPDRRSASVTAVSMKASAGAMNATSMVKVGNLARCLETLKAQGFW-VAAADMAGAPYYTR 203

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
               K+AL++G+EGKG+ P  ++     A +   G I + N S AA +
Sbjct: 204 DFTGKLALVIGSEGKGISPNVKKHCDFTASIPNYGSIDSFNASVAAGI 251


>gi|59712920|ref|YP_205696.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio fischeri
           ES114]
 gi|59481021|gb|AAW86808.1| 23S rRNA (Gm2251)-methyltransferase [Vibrio fischeri ES114]
          Length = 248

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 27/245 (11%)

Query: 48  NLFLYGVHTVSAALN-NPSR--KIF--------QLLATKNALARLDWDANLPHPFPVKTV 96
           N +++G+H   A L  +P+R  ++F        +LL   N L +L         F ++ +
Sbjct: 3   NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLG--------FKIQEL 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAI 150
           P +T+D      A HQG+     P   L    LD + +     LL+VLD V DPHN+GA 
Sbjct: 55  PRKTLDD-KANGANHQGIIARVTPAKQLNEHDLDDIVSQTENPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S S +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           G + ++   + Q      +A+++GAE +     K  +T   +  + M G + +L VS A+
Sbjct: 174 GTAGEATHDVFQSKLTGPLAIVMGAERRWHASLKHVKTCDDLIKIPMAGSVSSLKVSVAS 233

Query: 270 AVALY 274
            + L+
Sbjct: 234 GICLF 238


>gi|162451975|ref|YP_001614342.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161162557|emb|CAN93862.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 248

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 116/238 (48%), Gaps = 17/238 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
            +YG+  V  A+     ++  +L  ++   +LD  A L      P +  P   +D+    
Sbjct: 4   LVYGLQPVREAIRAHGARVGWVLVQRDGGPKLDALARLAEGQGIPTERAPRNELDR-RSA 62

Query: 108 EAVHQGLALETAPLLS----PTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFS 158
              HQG A+ +AP L       +  V   Q     + + LD V DP N GA++RSAVA  
Sbjct: 63  GGRHQG-AVASAPELQIVGVDEIPVVEEGQPGAGTITVALDGVMDPQNFGAVIRSAVALG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              I+  +  S   +    ++++GA+EH    R+ +L DAL+ + + G   I L  D++ 
Sbjct: 122 ARAILWPEHSSAPLTPATFRASAGAIEHARLCRVPSLPDALEALAARGVAAIAL--DAQG 179

Query: 219 PLE-QEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P+E  E+     +A+++GAE KG R   +     +A L M G I +LN S A A+ALY
Sbjct: 180 PVELGELPLTGPVAIVIGAEDKGTRRSVRRVCQHVARLPMTGPISSLNASVAGAIALY 237


>gi|251799664|ref|YP_003014395.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           JDR-2]
 gi|247547290|gb|ACT04309.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           JDR-2]
          Length = 251

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 20/199 (10%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAV-HQGLAL--------ETAPLLSPTLDAVRNSQLLMVLD 139
           H   V+ V  + +D +V  E V HQG+          E   LL+   + +  +  L++LD
Sbjct: 51  HGVIVQFVDKRKLDTMV--EGVQHQGVVAQAAAFAYAEIEDLLARARE-LNETPFLLILD 107

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+G+ILR+A      G+I  KR S   +A + K+++GA EH+P  R++NL   +
Sbjct: 108 EIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVLKTSAGAAEHVPVARVTNLAQTI 167

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGKGLRPKTQETATSMAHLH 255
            ++   G    G  +D   P  Q++   K    +A+++G EGKG+    +E    +  L 
Sbjct: 168 DRLKEEGVWVAG--TDVSAP--QDVYKTKFDLPLAIVIGNEGKGMGRLIKEKCDFLVKLP 223

Query: 256 MPGIIKALNVSNAAAVALY 274
           M G + +LN S AA V +Y
Sbjct: 224 MHGRLNSLNASVAAGVLMY 242


>gi|310659526|ref|YP_003937247.1| hypothetical protein CLOST_2222 [Clostridium sticklandii DSM 519]
 gi|308826304|emb|CBH22342.1| putative enzyme [Clostridium sticklandii]
          Length = 242

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L   LD +R        ++LD + DPHN+GAI+RSA      G+I  KR S S +A + K
Sbjct: 79  LEEVLDEIREKDEKPFFIILDEIEDPHNLGAIIRSAEGAGAHGVIIPKRRSASVNATVEK 138

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +A+GA  ++  I+++NL   ++K+   G     L  D +     ++K   +AL++G EGK
Sbjct: 139 TAAGAASYMKVIKVTNLVSTVEKLKKEGIWIYALDMDGESYDTVDLKG-SVALVVGNEGK 197

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+    ++       + M G + +LN S AA++ LY
Sbjct: 198 GISRLLKDNCDFTLKIPMKGNVGSLNASVAASILLY 233


>gi|302753442|ref|XP_002960145.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
 gi|300171084|gb|EFJ37684.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
          Length = 244

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 115/244 (47%), Gaps = 24/244 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL----------ATKNALARLDW--DANLPHPFPVKTVPP 98
           LYG+  V AAL    R ++ L             + ALA + W   A       V+T   
Sbjct: 3   LYGIGPVRAALQARRRDLYVLYIQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-------LDHVNDPHNIGAIL 151
             ++ +V     HQG+ L+ +PL    + A+     ++        LD V DP N GAIL
Sbjct: 63  HALNVLVDNRP-HQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RS+  F   G++   + S   S V++K+++GALE I  +   N+   L+     G++ IG
Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181

Query: 212 LSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            S+  +  +  ++ KN    L+LG EG G+RP     A  +     PG + +LNVS AA 
Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEADCVLR---PGTVDSLNVSVAAG 238

Query: 271 VALY 274
           V L+
Sbjct: 239 VLLH 242


>gi|320527640|ref|ZP_08028814.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
 gi|320131961|gb|EFW24517.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
          Length = 238

 Score = 92.4 bits (228), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 19/239 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHP--FPVKTVPPQTIDKIVG 106
           F+YG + V   L + S KI Q+  + +     D D   L H     +K V  +T+ ++  
Sbjct: 4   FVYGKNVVKQMLMDNS-KIKQIYMSVD-----DRDVEQLAHKQRVQLKRVDKKTLTQMT- 56

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           K   HQG+  E  P    ++D +          L+++LD + DPHN+GAILR+A A    
Sbjct: 57  KTDRHQGVVAEVDPYRLYSVDEIVQNVSEDGKGLIIMLDELEDPHNLGAILRTADAIGAT 116

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   +A +AK ++GA++ +    ++NL+  L+ +   G+  +G   D +   
Sbjct: 117 GVIFKKTNAVGLTATVAKVSAGAIDTVKCASVTNLSRTLEDLQKKGWWAVGTDMDGQDY- 175

Query: 221 EQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +K D    LI+G EGKG+    +E    +  L M G I++LN + +A + +Y   N
Sbjct: 176 -RSVKYDFNTVLIIGNEGKGISRLLREKCDFVVSLPMRGKIESLNAAVSAGILMYSIYN 233


>gi|293400417|ref|ZP_06644563.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306817|gb|EFE48060.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 240

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 121/241 (50%), Gaps = 19/241 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++YG + V   L    +KI+++L  +     AL +L  +    H    K +P + +D ++
Sbjct: 4   YVYGKNVVKQLLQE-DKKIYEILMAEGMRDTALEKLIKE----HKITCKILPRKKMDGML 58

Query: 106 GKEAVHQGLA-----LETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFS 158
             +  HQG+A      +T  LL   L+++   +  L ++LD + DPHN+GAILR+     
Sbjct: 59  --QGNHQGIAAKIDDYKTYELLE-LLESIPKGKMPLFVMLDGLEDPHNLGAILRTCDCVG 115

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DG+I  K  +   +  +AK ++GA++ +    ++NL  +++ +   GF  +G   ++ +
Sbjct: 116 VDGVIIGKHRNVGLTPTVAKVSTGAIDTVKVAMVTNLAQSIKYLKKQGFWIVGTDFENSR 175

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +   +  + +++G+EG G+    ++       L M G++ +LN S A  + LY   N
Sbjct: 176 DYREGQYDVPLVIVVGSEGFGISSLVKKNCDYCVRLPMEGVVTSLNASVACGILLYEIYN 235

Query: 279 H 279
            
Sbjct: 236 Q 236


>gi|255994721|ref|ZP_05427856.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
           49989]
 gi|255993434|gb|EEU03523.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
           49989]
          Length = 297

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 119/259 (45%), Gaps = 9/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARL 81
           ++N+   K M++ N+ ++ T      F+YG + V  AL + ++ I ++   + K    + 
Sbjct: 31  KKNNTSRKNMKNKNRDAKKTDLGNKFFVYGRNIVEEALIHSAKYIEKIYFSSKKKKNQKG 90

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LL 135
             D  +      + +    I + + +      +A+          DA+R +       L+
Sbjct: 91  IEDLAISKGLRPEYIDDDEIAEFISENDAQGCIAVFNKFAYRDIDDALRLADIRGEKPLV 150

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD + DP N+GAI+R+A      GII  K  +   +  +AK + GA+  IP I ++NL
Sbjct: 151 LVLDRIEDPRNLGAIIRTARCAGVHGIIIAKDRAAGITPTVAKVSEGAIFSIPCIMVTNL 210

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             AL+ +   GF      ++     EQE     +AL+LG EGKG+       +     + 
Sbjct: 211 AAALKDLKQRGFWVYAADANGDSCFEQEF-GGSVALVLGNEGKGISKLCLNESDYKVSIP 269

Query: 256 MPGIIKALNVSNAAAVALY 274
           M     +LNVS AA + +Y
Sbjct: 270 MVNDFDSLNVSVAAGILMY 288


>gi|228912831|ref|ZP_04076478.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925345|ref|ZP_04088441.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931594|ref|ZP_04094500.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943898|ref|ZP_04106283.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228983347|ref|ZP_04143560.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089223|ref|ZP_04220504.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
 gi|229119754|ref|ZP_04249015.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
 gi|229153870|ref|ZP_04282000.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|229182486|ref|ZP_04309737.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228600941|gb|EEK58510.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228629551|gb|EEK86248.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|228663655|gb|EEL19234.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
 gi|228694062|gb|EEL47744.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
 gi|228776337|gb|EEM24690.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228815731|gb|EEM61967.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828022|gb|EEM73750.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834267|gb|EEM79808.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846767|gb|EEM91772.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 175

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%)

Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           RN     ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP
Sbjct: 19  RNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIP 78

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E  
Sbjct: 79  VARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKC 138

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  L M G + +LN S AA++ +Y
Sbjct: 139 DFLITLPMVGKVTSLNASVAASLLMY 164


>gi|148657561|ref|YP_001277766.1| RNA methyltransferase [Roseiflexus sp. RS-1]
 gi|148569671|gb|ABQ91816.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus sp. RS-1]
          Length = 252

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 122/243 (50%), Gaps = 25/243 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTI 101
            LYG + V  AL    R   +LL +  A        + R+  +  +P    V+ +  + +
Sbjct: 4   LLYGRNAVREALRARRRTFQRLLVSAGAQETGTLGDIVRIAGEVGVP----VERIDRREL 59

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ----LLMVLDHVNDPHNIGAILR 152
           D+ + ++A HQG+ALE +    P +D     A+   +     L++LDH+ DP N+G +LR
Sbjct: 60  DRRL-RDANHQGVALECSDY--PYVDLNDCLALAEERGEPAFLLLLDHIQDPQNVGTLLR 116

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G++   R +   +  +  ++SGA+EH+    ++NL   ++++   G   +G+
Sbjct: 117 TAEVVGVHGVVIPGRRAAEVTPAVVNTSSGAVEHLRVAVVTNLAATIEQIQHAGVWVVGV 176

Query: 213 SSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             D +      +  D  +AL+LGAEG GL   T+E    +  L M G I +LNV+ A ++
Sbjct: 177 EDDERAYEYDRVDLDLPLALVLGAEGPGLARLTRERCDFLVRLPMRGQIASLNVAVAGSI 236

Query: 272 ALY 274
            LY
Sbjct: 237 VLY 239


>gi|262197042|ref|YP_003268251.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
           DSM 14365]
 gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
           DSM 14365]
          Length = 267

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 2/143 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DPHN+GAI+RSA     DG+I  K  +   S V+ K ++GA E I   +++
Sbjct: 111 LFVALDSVTDPHNLGAIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGATEQIAIAQVT 170

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NL  AL+++        GL++ +    L        + L+LGAEG GLRP    T   + 
Sbjct: 171 NLARALEQLKQAEVWIAGLAAGEGATSLPAFDATGALCLVLGAEGTGLRPLVARTCDFLI 230

Query: 253 HLHMPGI-IKALNVSNAAAVALY 274
            + M G  + +LNVS AA VALY
Sbjct: 231 EIPMLGAGVGSLNVSVAAGVALY 253


>gi|229027939|ref|ZP_04184092.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
 gi|229170943|ref|ZP_04298544.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228612483|gb|EEK69704.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228733327|gb|EEL84156.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
          Length = 175

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%)

Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           RN     ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP
Sbjct: 19  RNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIP 78

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E  
Sbjct: 79  VARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKC 138

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  L M G + +LN S AA++ +Y
Sbjct: 139 DFLITLPMVGKVTSLNASVAASLLMY 164


>gi|126640406|ref|YP_001083390.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 226

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 21/210 (10%)

Query: 80  RLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAP-----------LLSPTL 126
           RL     L  PF   V+     +++K+ G    HQG+     P           LL+ T 
Sbjct: 14  RLQKILQLAEPFGISVQKASRDSLEKLAGLP-FHQGVVAAVRPHPTLNEKDLDQLLAETP 72

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           DA     LL+ LD V DPHN+GA +R+A A     +I  +  S S +    K A+G  E 
Sbjct: 73  DA-----LLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAEK 127

Query: 187 IPYIRISNLTDALQKM-HSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKT 244
           + +I+++NL   L  +  +   + IG   D    P+++   +  + +++GAE  GLRP T
Sbjct: 128 VKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGAEDTGLRPIT 187

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q      A++ M G +++LNVS A  +ALY
Sbjct: 188 QAQCDQKAYIPMSGNLQSLNVSVATGMALY 217


>gi|197301392|ref|ZP_03166473.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
           29176]
 gi|197299549|gb|EDY34068.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
           29176]
          Length = 270

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 16/262 (6%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALA 79
           ++R N R ++      Q + HT     L + G + V  A  +  P  K+F L   ++   
Sbjct: 5   RMRENSRYHEAENHTGQDNSHT-----LVIEGRNAVLEAFRSGKPIDKVFVLDGCQDGPV 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132
           R        H   +  V  + + +I  +   HQG+    A     T+D +          
Sbjct: 60  RTIVREAKKHDALLNFVTKERLSQI-SETGKHQGVVAYAAAYEYSTVDDMLALAEERGED 118

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             +++LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  ++
Sbjct: 119 PFILILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKV 178

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +NL   ++++   G   +    D  +P+        I L++G EG+G+    +E    +A
Sbjct: 179 TNLVKTMEELKEKGLWFVCADMDG-EPMYHLNLTGPIGLVIGNEGEGVSRLVKENCDFVA 237

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G I +LN S AA V  Y
Sbjct: 238 GIPMKGQINSLNASVAAGVLAY 259


>gi|228919042|ref|ZP_04082421.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228950640|ref|ZP_04112774.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956533|ref|ZP_04118329.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229040997|ref|ZP_04189760.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|229067857|ref|ZP_04201174.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
 gi|229077387|ref|ZP_04210047.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
 gi|229107778|ref|ZP_04237414.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
 gi|229125609|ref|ZP_04254641.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|229142898|ref|ZP_04271339.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|229148501|ref|ZP_04276757.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|229176692|ref|ZP_04304096.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
 gi|229188377|ref|ZP_04315425.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228595051|gb|EEK52822.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228606735|gb|EEK64152.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
 gi|228634917|gb|EEK91490.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|228640519|gb|EEK96908.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228657801|gb|EEL13607.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228675627|gb|EEL30835.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
 gi|228705921|gb|EEL58247.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
 gi|228715216|gb|EEL67075.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
 gi|228727294|gb|EEL78488.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|228803098|gb|EEM49920.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228808991|gb|EEM55476.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228840567|gb|EEM85829.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 161

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%)

Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           RN     ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP
Sbjct: 5   RNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIP 64

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E  
Sbjct: 65  VARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGTMPIGLVIGSEGKGMSRIIGEKC 124

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  L M G + +LN S AA++ +Y
Sbjct: 125 DFLITLPMVGKVTSLNASVAASLLMY 150


>gi|288574821|ref|ZP_06393178.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570562|gb|EFC92119.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 269

 Score = 92.0 bits (227), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 4/177 (2%)

Query: 101 IDKIVGKEAVHQGLALET---APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +D+I G E  HQG+        P         +   LL+ +DHV DPHN GA++R+A A 
Sbjct: 84  LDEITGGEK-HQGIVANIDLPKPRDLSQFSPKKGPSLLLAMDHVKDPHNFGAMIRTAEAV 142

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I   R S   +  + K+++GA   +P   ++NL  +++ +   G+  +GL  +  
Sbjct: 143 GALGVIYPSRRSVGVTGTVIKTSAGAAFRVPLYEVTNLVRSMEILKKEGYWVVGLDHEEP 202

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +      DK+ L++G+EG+GL   + E    +  + M G   +LN S AAA+ ++
Sbjct: 203 RDIWSSPLPDKLVLMVGSEGEGLSRLSSERCDDLRRIPMVGKTGSLNASVAAALGMF 259


>gi|319957584|ref|YP_004168847.1| RNA methyltransferase, trmh family, group 3 [Nitratifractor
           salsuginis DSM 16511]
 gi|319419988|gb|ADV47098.1| RNA methyltransferase, TrmH family, group 3 [Nitratifractor
           salsuginis DSM 16511]
          Length = 233

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 2/164 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQGL  E       +L  V+    ++VLD + D  NIGAI+RSA A   DGI+ T     
Sbjct: 65  HQGLLAEIEDYRPASLAEVKEGDFVLVLDTLTDAGNIGAIVRSAYALGVDGIVATGIGQL 124

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           + SAV  +++SGAL  +P+    N+ D L ++   G +  G S +  +P+E+++ + K  
Sbjct: 125 NFSAV-TRTSSGALLEMPFALHRNILDVLHELKQAGHRLYGASMEG-EPIEEKLFDRKRT 182

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L+LG+E +G+  K +E       + M     +LNVS AAA+ ++
Sbjct: 183 LVLGSEERGISKKARERLDETVAIRMKRPFDSLNVSAAAAIMIH 226


>gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           ATCC 17745]
 gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           3_1_44]
 gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           ATCC 17745]
 gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           3_1_44]
          Length = 243

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D V DPHN+GAI+R+A       ++  KR++   +A +AK+++GA+E IP ++I 
Sbjct: 94  LLILTDGVEDPHNMGAIIRTAECAGATAVLIPKRHNAPINATVAKTSAGAIEQIPLVQIG 153

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++++   GF  +G   +  + L +        +++G EGKG+    +E    +  
Sbjct: 154 NVVQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVKEACDFLVT 213

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LN S AAAV +Y
Sbjct: 214 IPMYGNLNSLNASVAAAVLMY 234


>gi|228937394|ref|ZP_04100040.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970280|ref|ZP_04130939.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976850|ref|ZP_04137262.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
 gi|228782820|gb|EEM30986.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
 gi|228789389|gb|EEM37309.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822227|gb|EEM68209.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 161

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 1/146 (0%)

Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           RN     ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP
Sbjct: 5   RNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIP 64

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E  
Sbjct: 65  VARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKC 124

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  L M G + +LN S AA++ +Y
Sbjct: 125 DFLITLPMVGKVTSLNASVAASLLMY 150


>gi|319937667|ref|ZP_08012070.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319807102|gb|EFW03716.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 243

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 117/236 (49%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI-DKIVGKE 108
           ++YG +TV  +L    + ++++   KNA               V  V  + + +++VG  
Sbjct: 4   YIYGKNTVLESLKG-EKPVYEIYMMKNAKDEKLLSLAKAKNAKVNIVAHKGVLNQLVG-N 61

Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            VHQG+  +T      ++D + ++       LL++LD + DPHN+GAILR+  A   DG+
Sbjct: 62  VVHQGVVAQTEGYGYSSIDEIIDAIPKGKQPLLLMLDGLEDPHNLGAILRTCDAIEVDGV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   ++ +AK ++GA++++   +++NL+  L  +   GF  +G   +  +    
Sbjct: 122 IIGKNRSVGLTSTVAKVSTGAIDYVKVAQVTNLSRTLDDLKKRGFWVVGCELNESQDYRA 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              N  + +++G+EG G+    +        L M G + +LN S A A+ LY   N
Sbjct: 182 IDYNMPLVIVVGSEGFGISKLVKSHCDMNVVLPMTGHVTSLNASVATALILYQVYN 237


>gi|303240980|ref|ZP_07327490.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
 gi|302591405|gb|EFL61143.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
          Length = 333

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 80/141 (56%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DPHN+G+ILR+A A    G++  KR +   +A ++K+++GA+E++P  R++
Sbjct: 185 FIIILDGITDPHNLGSILRTANAVGAHGVVIPKRRAIGLTAAVSKASAGAIEYVPVARVT 244

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   +  +       +G     +K   +      IAL++G+EG+G+     E    + +
Sbjct: 245 NIAQTIDYLKEQNLWVVGTDQSGEKSFYEIDLKGPIALVIGSEGEGMGKLVSEKCDFVVN 304

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L M G I +LN + A A+ +Y
Sbjct: 305 LPMKGQISSLNAAVAGAIVMY 325


>gi|189502510|ref|YP_001958227.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497951|gb|ACE06498.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 246

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 108/215 (50%), Gaps = 9/215 (4%)

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           KIF    TKNA  +  ++A      P   VP   ++K+V     HQG+    +P+   TL
Sbjct: 25  KIFIDKDTKNADYQSIFNAIRYKQIPCSRVPVAKLNKLVPLN--HQGIVALLSPVPLVTL 82

Query: 127 DAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             +           L+++LD V D  N+GAI+R+AV      ++  K+ S S  +   K+
Sbjct: 83  SHIVQDTYEKGELPLIIILDGVTDVGNLGAIVRTAVCVGAHALVLPKQGSASLGSGAMKT 142

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ++GAL H+P  R +NL  ++  + + G Q I     ++  + Q       A++LG+E KG
Sbjct: 143 SAGALAHLPICREANLQASINYLQNSGLQVIACHEKTQTSIYQVKLTVPTAILLGSEDKG 202

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++P+        A + M G I +LNVS AAA+ LY
Sbjct: 203 IQPQLLNKVDVQASIPMVGPISSLNVSVAAAIILY 237


>gi|320535491|ref|ZP_08035597.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
           F0421]
 gi|320147683|gb|EFW39193.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
           F0421]
          Length = 255

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 81/145 (55%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + S L+++ D + DPHNIGAI+RSA  F  D +I  +R+S  +S ++AK ++GA   +P 
Sbjct: 104 KESALILMADSITDPHNIGAIVRSADQFGVDAVIVPQRHSAGDSEIIAKISAGATAWVPL 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I + NL    ++    GF   G  + S +P+ +     K  LILG+EG G+    +    
Sbjct: 164 IEVPNLVRTAEQCKKEGFWVYGADA-SGEPIGKLSFPQKTLLILGSEGSGIARLLKNCCD 222

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           S+  +   G + +LNVS AA + LY
Sbjct: 223 SLIAIPTRGKLDSLNVSVAAGILLY 247


>gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
           prausnitzii A2-165]
 gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
           prausnitzii A2-165]
          Length = 267

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 15/266 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           D +KM    ++S    QP+N   +YG + V+  L + S     L+A   A A   +   +
Sbjct: 2   DEQKMPRRPRRSSTEEQPKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTAM 61

Query: 88  PHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVL 138
                  VK V P  +  + G E+ HQG+A   + +   T++ + N          L++ 
Sbjct: 62  AKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYVTVEDLLNVAREKGEPPFLVLS 120

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P  R++N+ + 
Sbjct: 121 DGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGET 180

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++   G        D   PL +      IAL+LG+EG G+    ++    +  L M  
Sbjct: 181 IRRLKDQGVFVYCADMDG-VPLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMAA 239

Query: 259 ---IIKALNVSNAAAVALYITQNHFA 281
               + + NVS AA + LY  Q+  A
Sbjct: 240 QGTGVDSFNVSVAAGIILYEIQSQRA 265


>gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
           4810]
 gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
           4810]
          Length = 320

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 17/213 (7%)

Query: 78  LARLDWDANL--------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDA 128
           + RLD D  +            PV       +D++    +VHQG+AL   P   +   D 
Sbjct: 97  MVRLDADERVREIMRLATARGLPVAEASRTDLDRMT-DHSVHQGVALTIPPYEYADVQDL 155

Query: 129 VRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +R ++      LL+ LD + DP N+GAILRSA AF   G+I  +R S S +A + K A+G
Sbjct: 156 LRIAEERFEPPLLVALDGITDPRNLGAILRSADAFGAHGVILPERRSVSMTASVWKVAAG 215

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
           A   +   +++NL   L  +       +GL ++        E+      L++GAEGKGL 
Sbjct: 216 AAGRVRVAQVTNLNRTLTALKEQDVFALGLDAEGDVTTRGLELGTQPAVLVVGAEGKGLS 275

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ++    +  + M G  ++LN S AAA+ALY
Sbjct: 276 RLARDICDQVVSIPMGGRAESLNASVAAAIALY 308


>gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 243

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D V DPHN+GAI+R+A       ++  KR++   +A +AK+++GA+E IP +++ 
Sbjct: 94  LLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAIEQIPLVQVG 153

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++++   GF  +G   +  + L +        +++G EGKG+    +E    +  
Sbjct: 154 NVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVKEACDFLVT 213

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LN S AAAV +Y
Sbjct: 214 IPMYGNLNSLNASVAAAVLMY 234


>gi|225181305|ref|ZP_03734750.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168085|gb|EEG76891.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
           alkaliphilus AHT 1]
          Length = 245

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL-LSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+  ET P   +P  D +  +      L++LDH+ DPHN+GA++R+A A  CDGII  
Sbjct: 68  HQGVMAETPPFRYTPFADILAKAGDKPPFLVLLDHIQDPHNLGALIRTAYAAGCDGIIIP 127

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R +   +    ++A+GA E++P  ++ NL   L +    G    G   D +        
Sbjct: 128 ERRAAQMTPAAVRTAAGAAEYLPVAKVVNLARCLDECKDAGLWVYGADMDGESVYTTGDY 187

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L++G+EG+GL    +E    +  L M G + +LN S A A+ +Y
Sbjct: 188 QGGTVLVIGSEGEGLGRLVKEKCDHLVQLPMQGKVASLNASVAGALLMY 236


>gi|225552336|ref|ZP_03773276.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
 gi|225371334|gb|EEH00764.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
          Length = 246

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  + ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  + ++GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 157 NINNTINLLKNYGFWIYAGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
 gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
          Length = 243

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D V DPHN+GAI+R+A       ++  KR++   +A +AK+++GA+E IP +++ 
Sbjct: 94  LLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAIEQIPLVQVG 153

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++++   GF  +G   +  + L +        +++G EGKG+    +E    +  
Sbjct: 154 NVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVKEACDFLVT 213

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LN S AAAV +Y
Sbjct: 214 IPMYGNLNSLNASVAAAVLMY 234


>gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           6_1_27]
 gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           6_1_27]
          Length = 243

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D V DPHN+GAI+R+A       ++  KR++   +A +AK+++GA+E IP +++ 
Sbjct: 94  LLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAIEQIPLVQVG 153

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++++   GF  +G   +  + L +        +++G EGKG+    +E    +  
Sbjct: 154 NVAQTIKQLQKQGFWVMGAHMEGDRTLYEADMTIPTVIVIGNEGKGISRVVKEACDFLVT 213

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LN S AAAV +Y
Sbjct: 214 IPMYGNLNSLNASVAAAVLMY 234


>gi|284928667|ref|YP_003421189.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
 gi|284809126|gb|ADB94831.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
          Length = 236

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 7/155 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+A + +P    TLD +        +  ++++ D + DP N+GAI+R++ A  C G+I
Sbjct: 56  HQGIAAQVSPYSYYTLDRLITKAKQESDQPVIIIADGIVDPQNLGAIIRTSEAMGCQGLI 115

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R + S ++ +AK A+GALE  P  R+ NL  AL+ + + GF   G  ++  K L   
Sbjct: 116 IPQRRAASITSSVAKVAAGALEFFPIARVINLNRALETLKAEGFWIYGTVAEGGKNLPNF 175

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             +  I L++G+EG GL   TQ     +  + + G
Sbjct: 176 DFSCAIGLVIGSEGNGLNLLTQRYCDELLSIPLEG 210


>gi|160916266|ref|ZP_02078473.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
 gi|158431990|gb|EDP10279.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
          Length = 241

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 8/231 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V A L +  +K+++++ +     +           P K    + +D +     
Sbjct: 4   YVYGKNVVKALLAD-KKKVYEIILSDGFRDKELEQEIRKRKIPCKVNSRKKMDTMFSGSN 62

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+A +     + T++ +        + L ++LD + DPHN+GAILR+      DG+I
Sbjct: 63  -HQGIAAKIDDYKTYTIEELVAGVPKGKTPLFVMLDELEDPHNLGAILRTCDCVGVDGVI 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K      +  +AK ++GA++ +    ++NL   L+ +   GF   G   D+ +   Q 
Sbjct: 122 IGKHRGVKLTPTVAKVSTGAIDTVKVAVVTNLAQTLKGLKKEGFWVAGADFDNSQDYRQA 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + L++G+EG G+ P  ++       L M G + +LN S A AV LY
Sbjct: 182 SYDMPLVLVVGSEGFGISPLVKKNCDFFVRLPMEGSVSSLNASVACAVLLY 232


>gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 325

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 8/174 (4%)

Query: 109 AVHQGLALETAPL-LSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+A+E      +P  D +  S       LL+ LD V DPHN+GA+LRSA AF  DG
Sbjct: 143 ASHQGVAIEVRGYEYTPVDDLIAGSVQQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDG 202

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R S   +    K ++GA   +P  R +NL  AL+     GF  +GL      PL 
Sbjct: 203 VIIPERRSAGVTTAAWKVSAGAAARVPVARATNLVRALEDCKRAGFFVVGLDGGGDAPLR 262

Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + +  + L+ GAEG GL    ++T   +  + +   +++LN + A  +ALY
Sbjct: 263 GLPLADGPLVLVAGAEGTGLSRLVRQTCDQIVSIPISSAVESLNAAVATGIALY 316


>gi|119713688|gb|ABL97738.1| rRNA methyltransferase [uncultured marine bacterium EB0_41B09]
          Length = 246

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++LD V DP N+GA  R A A   D +I  K  +   +A + K A G  E +P++ ++
Sbjct: 99  LFLILDGVVDPQNLGACFRVADAMGVDALICPKDNAVGLNATVRKVACGGAESVPFVVVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++ + +      G   ++ K L++      IAL++G+EGKG+R  T E    +  
Sbjct: 159 NLARTIRYLKNSNVFVYGTDDNANKSLQKTNFKGSIALVMGSEGKGMRRLTNELCDDIFS 218

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LNVS A+ + LY
Sbjct: 219 IPMMGQVESLNVSVASGICLY 239


>gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
 gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
          Length = 323

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 88/173 (50%), Gaps = 10/173 (5%)

Query: 111 HQGLALETAPLLSP-----TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+  P         T  A  N +  L++ LD V DP N+GAI+RS  AF   G++
Sbjct: 140 HQGLVLQVPPYEYAHPEDLTAAAYDNGEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVV 199

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ- 222
             +R +   +A   K+++G     P  R++NLT ALQ     G   +GL+++    +   
Sbjct: 200 IPERRAAGMTAGAWKTSAGTAARTPVSRVTNLTRALQDYKKAGITIVGLAAEGTHTVNDL 259

Query: 223 -EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E+    + +++G+EGKGL     E    +  + MPG  ++LN   AA V LY
Sbjct: 260 AELAG-PVVIVVGSEGKGLGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311


>gi|15594861|ref|NP_212650.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
 gi|3915369|sp|O51468|Y516_BORBU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BB_0516
 gi|2688440|gb|AAC66889.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
          Length = 228

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  + ++
Sbjct: 79  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 138

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  + ++GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 139 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 198

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 199 IPTSGKIDSLNVSVSTGILIF 219


>gi|240047304|ref|YP_002960692.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae HRC/581]
 gi|239984876|emb|CAT04869.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae]
          Length = 229

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 3/167 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           HQG   +  P+    L+ ++  Q   L++LDH+ DP+N+GAI+RSA A     II   + 
Sbjct: 56  HQGYVGQIEPIRFYPLEVLQKEQPNYLLILDHIQDPYNLGAIIRSANAMGVKHIILPNKR 115

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKND 227
           +   + V  K +SG    I +I +++L+ A++K+  WGF     + D S   ++    N 
Sbjct: 116 ASKITEVSLKVSSGGFVGIKFIEVNSLSTAIEKLKKWGFWVYASALDKSSLEIDSVNLNT 175

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A+I+G+E KG+     + A  + ++ M G +++LNVS A  + L+
Sbjct: 176 PAAIIVGSESKGVSKTILKQADEIFYIPMFGSVQSLNVSVATGIILF 222


>gi|218249262|ref|YP_002375025.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           ZS7]
 gi|226321825|ref|ZP_03797351.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           Bol26]
 gi|218164450|gb|ACK74511.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           ZS7]
 gi|226233014|gb|EEH31767.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           Bol26]
          Length = 246

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  + ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  + ++GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQNINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|94676839|ref|YP_589003.1| RNA methyltransferase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219989|gb|ABF14148.1| RNA methyltransferase, TrmH family, group 3 [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 248

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 117/241 (48%), Gaps = 17/241 (7%)

Query: 48  NLFLYGVHTVSAAL-NNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YG+H V A L  +P   ++++ L    +   +            +K V  Q +D  
Sbjct: 2   NEIIYGIHAVQAILKRDPQLFKEVYLLERRNDQRFQCIIKQLKQKKIIIKIVNRQWLDMQ 61

Query: 105 VGKEAVHQGLA---------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V K A HQG+           +   L  P L A   + LL+VLD V DPHN+GA LR A 
Sbjct: 62  V-KGATHQGIIARVQTNRRQFQEQDL--PALLAQHTAPLLLVLDGVTDPHNLGACLRCAD 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   + II  +  S   +A + K ASGA E +P I+++NL   L+ +       +G + +
Sbjct: 119 AAGVNAIIIPRNRSAYLNATVKKVASGAAETMPLIQVTNLARTLRLLQEHNILILGTTIE 178

Query: 216 SKKPLEQ-EIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   + Q   K    IAL++GAEG G+R  T++    +  + M G + +LNVS A  V L
Sbjct: 179 ADSHIYQTSFKFTSPIALVVGAEGNGIRRLTKKYCNELLRIPMVGSVASLNVSVAVGVFL 238

Query: 274 Y 274
           +
Sbjct: 239 F 239


>gi|228471684|ref|ZP_04056457.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276837|gb|EEK15532.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 246

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 9/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLA-----LETAPLLSPTLDAVRNSQ--LLMVLDHVND 143
            P   VP + + ++      HQG+      +E  PL    L  + + +  LL++LDH++D
Sbjct: 48  LPCSYVPVEKLQRL--TRGNHQGVVALLSPVEFVPLEELVLSTIESGKVPLLLILDHLSD 105

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIGAI+R+A      GII  K+ S S    + K+++GA+ +IP  ++ NL D +  + 
Sbjct: 106 VRNIGAIIRTAECTGVSGIILPKQGSASIGEDMVKTSAGAIFNIPLCKVDNLIDTIYYLQ 165

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + IG +  +   L Q    + +A+++GAE  G+     +     A L + G I +L
Sbjct: 166 GSGIKVIGATEKASSLLYQLNLTEPLAIVMGAEDTGISKGVLKVLDERAKLPIQGEISSL 225

Query: 264 NVSNAAAVALY 274
           NVS A    LY
Sbjct: 226 NVSVACGAFLY 236


>gi|216264577|ref|ZP_03436569.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           156a]
 gi|223888839|ref|ZP_03623430.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           64b]
 gi|224533577|ref|ZP_03674166.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           CA-11.2a]
 gi|225548612|ref|ZP_03769659.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           94a]
 gi|226320997|ref|ZP_03796542.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           29805]
 gi|215981050|gb|EEC21857.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           156a]
 gi|223885655|gb|EEF56754.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           64b]
 gi|224513250|gb|EEF83612.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           CA-11.2a]
 gi|225370642|gb|EEH00078.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           94a]
 gi|226233598|gb|EEH32334.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           29805]
 gi|312148435|gb|ADQ31094.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           JD1]
          Length = 246

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  + ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  + ++GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168]
 gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168]
          Length = 244

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 77/141 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD V DPHN+GAI+R+A A    G+I  ++ S   + V+ K+++GA+ H+P  ++S
Sbjct: 95  FIIILDQVQDPHNLGAIIRTAYAAGAHGLIYPRKRSADITPVVTKASAGAVNHLPLAKVS 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   +  +   G    G      +P         + L++G EGKG+R   +E    + +
Sbjct: 155 NINYTIADLKDMGLWITGTDVRGTRPYYSADYKGPVGLVIGNEGKGMRRLVKENCDFVVN 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LN S AA V ++
Sbjct: 215 IPMSGELGSLNASVAAGVVIF 235


>gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus sp. 18P13]
          Length = 249

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 116/244 (47%), Gaps = 13/244 (5%)

Query: 42  HTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            T + +   + G + V  AL    P   I+ +  T  +L R+   A       VK V  Q
Sbjct: 2   QTQEKDEALIIGRNPVLEALKAEEPLDTIY-MNGTGGSLGRICTMAK-SRGIVVKNVTEQ 59

Query: 100 TIDKIVGKEAVHQGL----ALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILR 152
            + ++    A HQG+    A  +   L   LD  R    +  L+V D + DPHN+GAI+R
Sbjct: 60  KLSQMA-NGAAHQGVIATGACASYVTLEDLLDISRKKGTAPFLIVCDEIEDPHNLGAIIR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A     DG+I  KR S S +A + K+++GA   +P  R++NL  AL  +   G    G 
Sbjct: 119 TAETAGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVANLAAALDTLKEAGVWIYGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            + S    ++      +AL++G+EG G+    +E    +  L M G I +LN S AA + 
Sbjct: 179 DA-SGDAYDKVDLTGPVALVIGSEGFGMGRLVREKCDFLLRLPMCGRITSLNASVAAGIF 237

Query: 273 LYIT 276
           +Y T
Sbjct: 238 MYET 241


>gi|116751047|ref|YP_847734.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116700111|gb|ABK19299.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobacter
           fumaroxidans MPOB]
          Length = 252

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 121/249 (48%), Gaps = 17/249 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQT 100
           H+S P +L++ G + V   L     ++ +++     +AR D     L     ++ + P+ 
Sbjct: 5   HSSTPPHLWVSGFNPVREVLLTGRVEVLEMI-----VARSDQRVRELVELGALRGIAPRQ 59

Query: 101 -----IDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAI 150
                +  +VG  A HQG+AL         L+A+        + L++LD + DP N+GA+
Sbjct: 60  ETRDGLSALVG-HAHHQGVALRMREFPYAALEALLEKPTGEREPLVILDCLQDPQNLGAM 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA      G+I  +  S   ++ + + A+GA  ++P I+++NL  AL+++   G    
Sbjct: 119 LRSACFLGARGVIVPRDRSARVTSTVIRIAAGATAYLPVIQVNNLVRALEQLKECGLWIF 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL + + + +        + L++G E KGLRP       +M  +   G +++LN + + A
Sbjct: 179 GLDAQAAQTIYDADLTVPLGLVVGNEQKGLRPLVARACDAMVRIPEHGPLQSLNAATSGA 238

Query: 271 VALYITQNH 279
           +AL   Q  
Sbjct: 239 IALAEVQRR 247


>gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2]
          Length = 311

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 10/176 (5%)

Query: 108 EAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +A+HQG+AL+  P        LL    D    + LL+ LD + DP N+GAI+RSA AF  
Sbjct: 129 DAIHQGIALQIPPYDYAEPRDLLEVAADRA-EAPLLVALDGITDPRNLGAIVRSAAAFGG 187

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  +R + S +A   K+++GA   I   ++ NL  A+ ++       +GL  D +  
Sbjct: 188 HGVIIPERRAASMTAAAWKTSAGAAARIKVAQVVNLARAIDELKKQNVFVVGLDMDGEVE 247

Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L E     D + +++G+EGKG+     +    +  + +    ++LN   AAAV+LY
Sbjct: 248 LPELTFSRDPLCIVVGSEGKGISRLIADKCDQIVSIPIAATTESLNAGIAAAVSLY 303


>gi|302336402|ref|YP_003801609.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
           7084]
 gi|301320242|gb|ADK68729.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
           7084]
          Length = 299

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 6/189 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPH 145
            PV+ V    +D +      HQG+ +E++P    TL  V +S      L+++LDHV D  
Sbjct: 94  VPVERVSRARLDSLS-SHGAHQGIIVESSPFEYATLGDVISSAGSGDALVVLLDHVTDEG 152

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI+RSA      GI+     S S      K+++GA+ H+P  R+ NL  AL ++   
Sbjct: 153 NFGAIVRSAEVVGASGIVIANARSASVGVGAYKTSAGAVMHLPIARVPNLATALDRLKEA 212

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF     +  +++         ++ L++G+EG G+    +E       L   G I++LNV
Sbjct: 213 GFWVAAATEHAEQDAWSAPLGGRLCLVMGSEGGGISRLVRERCDFGCRLPQRGRIESLNV 272

Query: 266 SNAAAVALY 274
           + AA V  Y
Sbjct: 273 AQAATVLCY 281


>gi|255527269|ref|ZP_05394150.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|296187248|ref|ZP_06855644.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|255509054|gb|EET85413.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|296048119|gb|EFG87557.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
          Length = 276

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 131/278 (47%), Gaps = 25/278 (8%)

Query: 24  RRNHRDY--KKMQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           ++N +D   ++++  N  SR+TS+    E+L + G + V   L +  R + Q+L    A 
Sbjct: 5   KKNFKDNSNRRIEKDNNFSRNTSEKSFREDL-IEGRNAVIEVLKS-ERTVEQILV---AN 59

Query: 79  ARLDWDANL------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--- 129
             +    NL           +K V  + +D++  +   HQG+  +  P     +D +   
Sbjct: 60  GDVSGSINLILALAKEKKVVIKQVDRKKLDQL-SQTGAHQGVIAQITPYKYCDVDDIISY 118

Query: 130 ----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                    +++LD + DPHN G+I+R+A      GII  KR +   +  + K++ GA+E
Sbjct: 119 AEEKGEKPFIVILDEIEDPHNFGSIIRTAETCGVHGIIIPKRRNVGLTPAVYKASVGAIE 178

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+   +I+N+ +A+ K+   G    G   + +           +ALI+G+EGKG+   T+
Sbjct: 179 HMKIAKITNINNAIDKLKEQGIWVYGADMNGENYCYDVDFRGAVALIIGSEGKGILKLTK 238

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
                +  + M G I +LN S A  + +Y I +  F K
Sbjct: 239 NKCDVLVKIPMVGNISSLNASVAGGILMYEILKQRFKK 276


>gi|224532773|ref|ZP_03673390.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           WI91-23]
 gi|224512391|gb|EEF82775.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           WI91-23]
          Length = 246

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  + ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  + ++GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|221218099|ref|ZP_03589565.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           72a]
 gi|221192047|gb|EEE18268.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           72a]
          Length = 246

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  + ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  + ++GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 322

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 12/194 (6%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIG 148
           VP   +D++V    +HQG+ L+  P      +  LD    S    LL+ LD++ D  N+G
Sbjct: 128 VPRTDLDRMV-SNGMHQGVGLQVPPYQYTDPADLLDMAMGSSEPALLVALDNITDTRNLG 186

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NL   L      G Q
Sbjct: 187 AVIRSVAAFGGHGVLIPERRSASITAVAWRTSAGAAARLPVARATNLNRTLLDWAKAGVQ 246

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL ++    L+         +++G+EGKGL    +E   S+  + +   +++LN S A
Sbjct: 247 LVGLDAEGDVSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASEVESLNASVA 306

Query: 269 AAVALYITQNHFAK 282
           A V L    + FA+
Sbjct: 307 AGVVL----SEFAR 316


>gi|291167104|gb|EFE29150.1| RNA methyltransferase, TrmH family, group 3 [Filifactor alocis ATCC
           35896]
          Length = 242

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 94/173 (54%), Gaps = 8/173 (4%)

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+   T      T++ +         +  L++LD + DPHN+GA++RSA     DG
Sbjct: 62  AAHQGVIALTMDYAYSTVEEILASVKMQNKTGFLLILDEIEDPHNLGALIRSAEGAGVDG 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S + +A + K+++GA+ ++   R++N++  ++ +    +   GL  D  +  +
Sbjct: 122 VILPKRRSATVNATVEKTSAGAVSYMKVARVTNISQTIELLKKENYWVYGLDMDGTEYTQ 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   + IA+++G EGKG+    ++    +  + M G I++LN S A +V L+
Sbjct: 182 NDWSGN-IAIVVGNEGKGMGRLVRQHCDKILSIPMKGQIQSLNASVAGSVILF 233


>gi|225549662|ref|ZP_03770628.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           118a]
 gi|225369939|gb|EEG99386.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           118a]
          Length = 246

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  + ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  + ++GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|257792139|ref|YP_003182745.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
           2243]
 gi|257476036|gb|ACV56356.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
           2243]
          Length = 248

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 16/195 (8%)

Query: 93  VKTVPPQTIDKIVGK--EAVHQGLALETAPL----LSPTLDAVRNSQ-------LLMVLD 139
           V+ VP + +D   GK     HQG+  + AP     +   +DA   S        L+++LD
Sbjct: 50  VEMVPRKVLD---GKSDRGSHQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILD 106

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           H+ D  N+GA+ RSA A    GI+   + S    A   KS++GA+ H+P  ++SNL   +
Sbjct: 107 HITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTM 166

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++   GF   G +  +K  + +     KIAL++G E +G+     E    +  L + G 
Sbjct: 167 SRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGE 226

Query: 260 IKALNVSNAAAVALY 274
           + +LNV+ AA   +Y
Sbjct: 227 VASLNVAQAATACMY 241


>gi|302804484|ref|XP_002983994.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
 gi|300148346|gb|EFJ15006.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
          Length = 244

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 24/244 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL----------ATKNALARLDW--DANLPHPFPVKTVPP 98
           LYG+  V AAL    R ++ L             + ALA + W   A       V+T   
Sbjct: 3   LYGIGPVRAALQARRRDLYVLYVQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-------LDHVNDPHNIGAIL 151
             ++ +V     HQG+ L+ +PL    + A+     ++        LD V DP N GAIL
Sbjct: 63  HALNVLVDNRP-HQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RS+  F   G++   + S   S V++K+++GALE I  +   N+   L+     G++ IG
Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181

Query: 212 LSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            S+  +  +  ++ KN    L+LG EG G+RP        +     PG + +LNVS AA 
Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEVDCVLR---PGTVDSLNVSVAAG 238

Query: 271 VALY 274
           V L+
Sbjct: 239 VLLH 242


>gi|326790453|ref|YP_004308274.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           lentocellum DSM 5427]
 gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           lentocellum DSM 5427]
          Length = 297

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 138/277 (49%), Gaps = 30/277 (10%)

Query: 30  YKKMQSFNQK--------SRHTSQPENL-----FLYGVHTVSAALNNPSRKIFQLLATKN 76
           + K +SF ++        +R +  PE+       L+G + V  AL +  R+I ++L  K 
Sbjct: 24  FNKRESFKKEKPEFTRGYNRRSVVPEDFEIDENILFGRNAVIEALKS-EREIDKILIQKG 82

Query: 77  ----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-----ALETAPLLSPTLD 127
               ++ ++   A       ++ V    +D++ G+E  HQG+     A E   +     D
Sbjct: 83  EKEGSVIKIISAAKAKGIVTLE-VEKSKLDELTGREK-HQGVVAYVAAHEYVSVEEILED 140

Query: 128 AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           A    +   +++L+++ DPHN+GAI+R+A      GII  KR +   +  +AK+++GALE
Sbjct: 141 AAAKGEPAFVLILENIQDPHNLGAIIRTAHTAGVHGIIIPKRRAVGLTGTVAKASAGALE 200

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H    ++SN+   ++ +   G        D K   E+ +    I +++G+EG+G+   T+
Sbjct: 201 HTKVAKVSNIAQTIKDLQQKGLWIACADMDGKVLFEENL-TGPIGIVVGSEGEGISKLTK 259

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280
           +T   +  + M G + +LN S AA++ +Y  + Q +F
Sbjct: 260 QTCDYVVSVPMYGKVTSLNASVAASLMVYEVVRQRNF 296


>gi|195941652|ref|ZP_03087034.1| rRNA methylase [Borrelia burgdorferi 80a]
 gi|312149360|gb|ADQ29431.1| RNA methyltransferase, TrmH family [Borrelia burgdorferi N40]
          Length = 246

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 84/141 (59%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  + ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKMTVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  + ++GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 157 NINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|89891665|ref|ZP_01203168.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium BBFL7]
 gi|89516000|gb|EAS18664.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium BBFL7]
          Length = 244

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 9/233 (3%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++YG+  +  A+ +     K++ L   +  L          H      VP + +DKI   
Sbjct: 6   YIYGLRAIIEAIESGQNLGKVYLLREAEGVLMGQLKTLVTKHKITNSFVPVEKLDKI-SS 64

Query: 108 EAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              HQG     +P+   +L+       V + ++ ++LD V D  N GAI+R+A       
Sbjct: 65  HGNHQGAVASISPVDFASLEDILEQRNVESKEIYLLLDGVTDVRNFGAIIRTAECTGVSA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  S   +    K+++GA+ +IP  ++S++ DA+  M ++G  TIG +  S K + 
Sbjct: 125 IIIGESGSAPINPATIKTSAGAVFNIPICKVSHIKDAVFLMKAYGITTIGATEKSTKLVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               N  IAL++G+E +G+ P T +       L M G I +LNVS A    LY
Sbjct: 185 DIDLNQSIALVMGSEERGINPSTLKVIDEPIKLPMKGDIASLNVSVACGAILY 237


>gi|118602547|ref|YP_903762.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567486|gb|ABL02291.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 247

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 21/243 (8%)

Query: 47  ENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI- 104
           +++ +   H V A L +NP+  I   +  K    RL+    L   F    +  Q   KI 
Sbjct: 3   KSIIITSFHAVQAQLKSNPTCFIKVFILNKRCDKRLN---TLTSEFNNFGISVQRCTKIQ 59

Query: 105 ---VGKEAVHQGLALETAPLLSPTL----------DAVRNSQLLMVLDHVNDPHNIGAIL 151
              +     HQG+A E   +L PTL            + N+  +++LD + DP N+GA L
Sbjct: 60  LDKLSNHQTHQGVAAE---ILLPTLPDQGELISYVSKLDNAGFILILDSIQDPRNLGACL 116

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A     ++  K  S   ++++ K+++GAL  +   +++NL+  ++ +       IG
Sbjct: 117 RSANAAGVHCVVINKNGSAPINSLVHKTSAGALNQLKIFQVTNLSRTIKALQQKNIWVIG 176

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L       + Q       A+I+GAEG GLR  T+++   +A + M G +++LNVS A  V
Sbjct: 177 LDGSVNISIYQIDLTIPNAIIMGAEGSGLRRLTKQSCDQLAKIPMQGKVESLNVSVATGV 236

Query: 272 ALY 274
            L+
Sbjct: 237 TLF 239


>gi|325833012|ref|ZP_08165639.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
 gi|325485729|gb|EGC88194.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
          Length = 248

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 16/195 (8%)

Query: 93  VKTVPPQTIDKIVGK--EAVHQGLALETAPL----LSPTLDAVRNSQ-------LLMVLD 139
           V+ VP + +D   GK     HQG+  + AP     +   +DA   S        L+++LD
Sbjct: 50  VEMVPRKVLD---GKSDRGSHQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILD 106

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           H+ D  N+GA+ RSA A    GI+   + S    A   KS++GA+ H+P  ++SNL   +
Sbjct: 107 HITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTM 166

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++   GF   G +  +K  + +     KIAL++G E +G+     E    +  L + G 
Sbjct: 167 SRLKEEGFWIAGATEHAKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGE 226

Query: 260 IKALNVSNAAAVALY 274
           + +LNV+ AA   +Y
Sbjct: 227 VASLNVAQAATACMY 241


>gi|188524104|ref|ZP_03004184.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195867706|ref|ZP_03079707.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198273459|ref|ZP_03205995.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|195659743|gb|EDX53123.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195660561|gb|EDX53817.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198249979|gb|EDY74759.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
          Length = 239

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 79/140 (56%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD + DP N GAI+R+A AF  DGII  K +  S + ++ K++ GA+ +I  I +S
Sbjct: 91  LILMLDEIEDPRNFGAIIRTANAFGVDGIIYKKYHQASINDLVIKTSMGAINYIHMIEVS 150

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL++A++ + + GF     S    +  E+    +K   I+G E KG+ P   + A     
Sbjct: 151 NLSNAIKNLQNEGFWVYATSLLKSQSYEKVDYANKSVFIVGNESKGVSPLILKNADQSVR 210

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G +++LNV  A  + L
Sbjct: 211 IDMFGDVQSLNVGVATGIIL 230


>gi|81300928|ref|YP_401136.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
           7942]
 gi|81169809|gb|ABB58149.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
           7942]
          Length = 519

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 21/240 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--------DANLPHPFPVKTVPPQTI 101
            +YG H V AAL   +R + ++  T     RL +        DA       V  VP + I
Sbjct: 243 LIYGRHAVLAALQG-NRTLNRIWVT----PRLRYESTFLELIDAAKAGGAVVDEVPVERI 297

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            ++    AVHQG+A + AP        L     A     +++V D + DPHN+GAI+R+A
Sbjct: 298 RQLT-DGAVHQGIAAQVAPYPYQELSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTA 356

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G++  +R +   +A +AK A+GALE  P  R+ NL  AL+++   GF   G + 
Sbjct: 357 EALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARVVNLNRALEELKDAGFWIYGAAG 416

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++K+ + +   +  + L++G+E +GL   T+E    +  + + G   +LN S AA + LY
Sbjct: 417 EAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLY 476


>gi|300857265|ref|YP_003782249.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 266

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 19/257 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW---DA 85
           YKK  +   K   T   E+L + G + V  AL + +  I Q+ LA  N    ++     A
Sbjct: 5   YKKSTNLTDK---TEFREDL-IEGRNAVIEALKSSNTTIEQIFLAEGNMSGSINIILAKA 60

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVL 138
              H   VK V  + +DKI  +   HQG+  +  P     +   L+  R  +    ++VL
Sbjct: 61  KEKH-IVVKQVDRKKLDKI-SQTGAHQGVIAQITPYKYCEVEDILEYAREKKEAPFIIVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN GAI+R+A      GII  KR +   + V+ KS+ GA E++   +++NL   
Sbjct: 119 DEIEDPHNFGAIIRTAEICGAHGIIIPKRRNVGITPVVYKSSVGAAEYMKICKVTNLNTT 178

Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           ++K+   G    G   S      + + K    ALI+G+EG+G+   T+E    +  + M 
Sbjct: 179 IEKLKKDGIWVYGADMSGENYCFDVDFKGPA-ALIIGSEGRGIAKLTKEKCDVLVKIPMV 237

Query: 258 GIIKALNVSNAAAVALY 274
           G + +LN S A  + +Y
Sbjct: 238 GRVSSLNASVAGGILMY 254


>gi|150025415|ref|YP_001296241.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771956|emb|CAL43430.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 244

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 7/173 (4%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG     AP+    L   +D V  S    L ++LD ++D  N GAI+R+A     DGII
Sbjct: 67  HQGAVATIAPIAFQDLEKLIDTVIESGKKPLFLILDQLSDARNFGAIIRTAECTGVDGII 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K+ S   +    K+++GA+ ++P  ++ ++ DA+  + + G +T+  +  ++  +   
Sbjct: 127 VQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFLLQASGIKTVAATEKTESNIYDI 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             N+ +A+I+G+E +G+ P   +     A L M G I +LNVS A    LY T
Sbjct: 187 SLNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIGSLNVSVACGAFLYET 239


>gi|119356408|ref|YP_911052.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266]
 gi|119353757|gb|ABL64628.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides DSM 266]
          Length = 252

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL----LSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+    + +    +   LD  RN+  LL++L  + DPHNIGAI+R+A A + D ++  
Sbjct: 76  HQGVCALVSAVSYYTIEEVLDKPRNTFPLLLILQGLEDPHNIGAIIRTAEAVAADAVLLI 135

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +      +A + K+++GAL H+   ++ +L   L+ +H   F  I    D++        
Sbjct: 136 EGKGSPVNATVHKASAGALSHMRVCKVKSLVRCLEFLHERKFLIIAADMDAEINYTDIDL 195

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +A++LGAEG GL P+  +       + M G +++LNVS  A V LY
Sbjct: 196 TKALAIVLGAEGSGLAPEAVKFCDHTVRIPMAGCVESLNVSVTAGVLLY 244


>gi|291288813|ref|YP_003505629.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885973|gb|ADD69673.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 225

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 15/231 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + ++G +TV  AL      I +LL  K       +D +  +    +T  P+  +   GKE
Sbjct: 1   MIIHGRNTVEEALK---LGIVKLLFVK---VNSTFDTS-KYDVETRTYGPKEFEHYYGKE 53

Query: 109 AVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           A  QG+A E   +L        D +     +++LD + DP N GAI+R+A  F    I+ 
Sbjct: 54  A--QGIAAEIRDMLPKKFDKAFDEIVEKGSVVLLDRIFDPMNYGAIIRAANCFGIKTILV 111

Query: 165 T-KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
              R +P  SAV  K++SG + +   +   N   AL+K+   G+       + K  L+  
Sbjct: 112 GLDRQAPITSAV-CKASSGTIFYTDIVGAVNTATALKKLQENGYTAYAADVNGKVELKDV 170

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +K  +I+G+EGKG+RP   +TA     + M G I +LNVS +AAV LY
Sbjct: 171 EFAEKSIIIMGSEGKGIRPALLDTADVHIKIPMNGDIDSLNVSQSAAVILY 221


>gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           intracellulare ATCC 13950]
          Length = 310

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 12/263 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A +R NH   K+ QS +++       E   + G + V   L    P+  ++  L ++ A 
Sbjct: 41  AHMRPNHPAAKRAQSPSRRPARGKTDETETVLGRNPVLECLRAGVPATALYVALGSE-AD 99

Query: 79  ARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNS 132
            RL    +      +    VP   +D++     +HQG+AL+  P         ++A   S
Sbjct: 100 ERLTESVSRAADLGIAILEVPRTDLDRMTNNH-LHQGIALQVPPYNYAHPDDLVEAATGS 158

Query: 133 --QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   +P  
Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVA 218

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  L      G + IGL +     L+     D I +++G+EGKGL    ++    
Sbjct: 219 RATNLTRTLTDWADRGLRVIGLDAGGDTTLDDLDGTDPIVVVVGSEGKGLSRLVRQNCDE 278

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
           +  + M G  ++LN S AA V L
Sbjct: 279 VVSIPMAGNAESLNASVAAGVVL 301


>gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           5521]
 gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           5521]
 gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 277

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPH 145
           +K V  + +D +   E  HQG+  +  P   S   D    ++       +++LD V DPH
Sbjct: 82  IKEVDKRKLDSMCDGET-HQGVIAKVTPFKYSEVSDIFELAEQKGEAPFIVILDEVEDPH 140

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I R+A  F   GII  KR S S +A + KS+ GA+EH+   +++N+   ++++   
Sbjct: 141 NLGSIARTAELFGVHGIIIPKRRSASVTATVYKSSVGAIEHVKVAKVNNINSTIEELKEK 200

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G    +++   +   +   AL++G EG+G+   T +    +  + M G I +LN 
Sbjct: 201 GVWIYGADIRAEEYSHEVDYSGPCALVIGNEGRGMSKLTVQKCDKLIKIPMVGKINSLNA 260

Query: 266 SNAAAVALY 274
           S A  + +Y
Sbjct: 261 SVAGGIMMY 269


>gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258249|gb|EDS72215.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
           17244]
          Length = 242

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    +P+ + +L  +           L+++LD++ DPHN GAI+RSA     DG+I
Sbjct: 67  HQGVLALCSPVETISLRELIEKMNEKVTKPLVVILDNITDPHNAGAIIRSAYCAGADGVI 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
              R S S    + KS++GA+EHI    +SN+   +  +   G   +GL  + +   + +
Sbjct: 127 MQTRRSASIGEGMYKSSAGAIEHIDLCEVSNIAQTIDTLKKEGLFVVGLDMNGENYYDMD 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  +AL++GAEGKGL    +E    ++ + +     +LN S AA + L+
Sbjct: 187 Y-DMPLALVVGAEGKGLGRLIKEKCDFISSIPLKNDFDSLNASVAAGIVLF 236


>gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 245

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 111 HQGL-----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+     A+E   L     ++   + LL++ D V DPHN+GAI+R+A       ++  
Sbjct: 66  HQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATAVLIP 125

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           KR++   +A +AK+++GA+E I  +++ N+T  ++++   GF  +G   +  + L +   
Sbjct: 126 KRHNAPINATVAKTSAGAVEQISLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLYEADL 185

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L++G EGKG+    +E    +  + M G + +LN S AAA+ +Y
Sbjct: 186 TIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMY 234


>gi|317123114|ref|YP_004103117.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           marianensis DSM 12885]
 gi|315593094|gb|ADU52390.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           marianensis DSM 12885]
          Length = 298

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 8/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVND 143
            PV+ V P  I++    +  HQG+    APL    L   LD    +    LL++   + D
Sbjct: 93  VPVEEVDPVEIERRAQTD-THQGVLALAAPLPRYDLLDLLDRAAGAGQPPLLVICAEIQD 151

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GA+ R+A A    G +     S    A + KS++GAL H+P   ++NL  +++++ 
Sbjct: 152 PHNLGAVFRTAEAAGAHGAVVPVHRSAPLGATVFKSSAGALVHLPVAEVTNLARSVEQLK 211

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G   +    +  +P ++      +A++LG+EG+G+ P  +        + M G + +L
Sbjct: 212 ERGVWVVAADPEGAEPYDRWDWTQPVAVVLGSEGRGVPPLVRRRCDGRVTIPMAGRVGSL 271

Query: 264 NVSNAAAVALY 274
           NVS AA V L+
Sbjct: 272 NVSVAAGVLLF 282


>gi|163752931|ref|ZP_02160055.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
 gi|161326663|gb|EDP97988.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
          Length = 246

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 13/240 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTI 101
           Q  N  ++G+  +  A+N+ S   K+F     +  L   + D  L  +      VPP+ +
Sbjct: 2   QNNNTQIFGIRAIIEAINSGSTIDKVFIQKGLRGELFN-ELDHLLRSNAISTSFVPPEKL 60

Query: 102 DKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSA 154
           +++  K   HQG+    +P     L +  L+ + + ++   ++LD ++D  N GAI+R+A
Sbjct: 61  NRLTKKN--HQGVIALISPIEFHDLDTLVLNVIESGRVPKFLILDQLSDVRNFGAIIRTA 118

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                DGII  K+     +A   K+++GA+  +P  ++ ++ DA+  + S G Q +  + 
Sbjct: 119 ECTGVDGIIIQKKGGAPVNADAVKTSAGAIFKMPICKVDHIKDAIYHLQSSGVQIVAATE 178

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++  L        +A+++G+EGKG+ P   +     A L M G I +LNVS A    LY
Sbjct: 179 KTENTLYDVDFTIPVAIVMGSEGKGVSPSILKIVDHQAKLPMLGEIASLNVSVACGAFLY 238


>gi|229819278|ref|YP_002880804.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
           DSM 12333]
 gi|229565191|gb|ACQ79042.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
           DSM 12333]
          Length = 324

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 8/174 (4%)

Query: 109 AVHQGLALETAPL--LSPT--LDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AVHQG+ L   P     P   L+A   S    L++ LD + DP N+GA+LRSA AF   G
Sbjct: 144 AVHQGVVLAVPPYDYAEPAELLEAAERSGTPALVIALDSITDPRNLGAVLRSAGAFGAHG 203

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           ++   R S   +A   K+++GA   +P  R +NL  ALQ+  + G   +GL  D    + 
Sbjct: 204 VLVPARRSAGVTAAAWKTSAGAAARVPVARATNLVRALQEYQAAGCFVVGLDGDGPGMVG 263

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  + +  + L++G+EGKGL    +ET   +A + +   +++LN S AA++ALY
Sbjct: 264 DLPVADGPVVLVVGSEGKGLSRLVRETCDVVAAIPIASSVESLNASVAASIALY 317


>gi|295106719|emb|CBL04262.1| rRNA methylase, putative, group 3 [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 248

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 14/200 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----------NSQLLMVLDHV 141
           V TVP +T+D    +   HQG+  ET P     +  +               L+++LDH+
Sbjct: 50  VTTVPRKTLDD-KSERGSHQGVMAETKPHAYVDITVIERAAEAYAEENGGRALVVILDHL 108

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+GAI RSA A    G++   + S    A   KS++GA+ H+P  ++ NL   + +
Sbjct: 109 TDAGNLGAIARSAEAVGACGLVIPNKRSAKVDASTYKSSAGAIAHLPVAQVPNLVQVMAR 168

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF   G S  +   + +     KIAL++G E +GL    +E+   +  L   G + 
Sbjct: 169 LKERGFWVAGASEQTDDVIWRSNLKGKIALVMGNEAEGLSRVVKESCDFLVKLPQMGEVA 228

Query: 262 ALNVSNAAAVALY--ITQNH 279
           +LNV+ A+   +Y  + QN+
Sbjct: 229 SLNVAQASTACMYEWLRQNY 248


>gi|167753257|ref|ZP_02425384.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
 gi|167659188|gb|EDS03318.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
          Length = 243

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 15/238 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDK 103
           ENL ++G+  V  A+    ++I +L   K A  +L     D  L H    + VP + +++
Sbjct: 3   ENL-VFGIRPVVEAIE-AGKQIEKLYIRKGAEGQLMTELRDLCLRHRIRTQEVPVEKLNR 60

Query: 104 IVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAF 157
           +      HQG+  + +P+    L+  L+ V   +  L+++ D V D  N GAI RSA   
Sbjct: 61  LT--RGNHQGVVAQISPIGYVELNDILERVPEDETPLIVLFDGVTDVRNFGAIARSAECA 118

Query: 158 SCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              G+I   K  +P  S  + +S++GAL  IP  R+ ++ + L+ + + G+Q +G +  S
Sbjct: 119 GAHGLIVPLKNAAPVNSEAI-RSSAGALTAIPVCRVGSIRNTLKALQAEGYQVVGATEKS 177

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +K L         AL++GAE  G+  +  +       + M G I++LNVS AAAV L+
Sbjct: 178 RKLLYDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPMIGKIESLNVSAAAAVLLF 235


>gi|56751982|ref|YP_172683.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56686941|dbj|BAD80163.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 519

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 21/240 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--------DANLPHPFPVKTVPPQTI 101
            +YG H V AAL   +R + ++  T     RL +        DA       V  VP + I
Sbjct: 243 LIYGRHAVLAALQG-NRTLNRIWVT----PRLRYESTFLELIDAAKAGGAVVDEVPVERI 297

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            ++    AVHQG+A + AP        L     A     +++V D + DPHN+GAI+R+A
Sbjct: 298 RQLT-DGAVHQGIAAQVAPYPYQELSDLIAQAKAATTDPVIVVADGITDPHNLGAIIRTA 356

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G++  +R +   +A +AK A+GALE  P  R+ NL  AL+++   GF   G + 
Sbjct: 357 GALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARVVNLNPALEELKDAGFWIYGAAG 416

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++K+ + +   +  + L++G+E +GL   T+E    +  + + G   +LN S AA + LY
Sbjct: 417 EAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLISIPLRGKTNSLNASVAAGMVLY 476


>gi|203287959|ref|YP_002222974.1| rRNA methylase [Borrelia recurrentis A1]
 gi|201085179|gb|ACH94753.1| rRNA methylase [Borrelia recurrentis A1]
          Length = 244

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 14/201 (6%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-----------LSPTLDAV--RNSQ 133
           L     +K +    + KI+G    H+G AL+   L           L   L     +N+ 
Sbjct: 36  LARQHNIKIIKINDLTKILGNNN-HRGFALKLQNLKDYNTINKNKNLEEYLKEFQHKNNI 94

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD + DP N GAILR+A  F+ D +IT +R S  ++A + +++SGA +++  + + 
Sbjct: 95  LILILDSIEDPQNFGAILRTAEQFNIDLVITNQRKSVKDNATVLRTSSGASQYVNKLTVP 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + ++ +   GF         +     +I ++KIALI+G EGKG+    +  +  +  
Sbjct: 155 NINNVIRYLKKQGFWIYASDIKGQAINNTKITDNKIALIMGNEGKGIHNLLKNNSDFLIK 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 215 IPTKGKIDSLNVSVSTGILIF 235


>gi|311746389|ref|ZP_07720174.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
 gi|126575275|gb|EAZ79607.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
          Length = 258

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDK 103
           E  F++G   V  A++   +++ ++L  K   N L +        +  PV  VP   +++
Sbjct: 16  EKDFIFGTRAVMEAIH-AGKEMDKVLVQKELNNDLIKELLQVCKANAVPVVRVPDAKLNR 74

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG+    + +   +LD       +V  S L+++LD + D  N GAI RSA  
Sbjct: 75  VTRKN--HQGVVAYISSIEYASLDHVIESCFSVGKSPLVLILDRITDVRNFGAIARSAEC 132

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   + S   ++   K+++GAL  +P +R+ NL    + +   G   + ++  S
Sbjct: 133 AGIDAIVIPSKGSAQINSDAVKTSAGALNFLPVVRVKNLFYTCRDLQKMGLTLVAITEKS 192

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K + +      +A+I+G+E  G+  +    A    ++ M G I++LNVS +A VA+Y
Sbjct: 193 DKDMYEADFASPVAMIMGSEEDGISNELMGIADEKVNIPMLGKIESLNVSVSAGVAIY 250


>gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus
           flavefaciens FD-1]
          Length = 254

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 8/173 (4%)

Query: 109 AVHQGLALETAP----LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+A   A      +   L   RN      +++ D + DPHN+GAI+R+A     DG
Sbjct: 73  ASHQGVAAVGACGEYVSVEDILAVSRNKGTKPFIIICDEIEDPHNLGAIIRTAETSGADG 132

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR S S +A + K+++GA  ++P  R+SNL   +  +   G    G  +   +  +
Sbjct: 133 IIIPKRRSASLNATVFKTSAGAANYVPVARVSNLASCIDMLKENGVWIYGTDASGTEYTQ 192

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +      AL++G+EG G+    Q+    M  L M G I +LN S AA + +Y
Sbjct: 193 TDFTG-SCALVIGSEGFGISKLIQKKCDFMIKLPMLGKINSLNASVAAGIFMY 244


>gi|187918381|ref|YP_001883944.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
 gi|119861229|gb|AAX17024.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
          Length = 244

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 102/201 (50%), Gaps = 14/201 (6%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-----------LSPTLDAVR--NSQ 133
           L     ++ +    + KI+G    H+G AL+   L           L   L+  +  N+ 
Sbjct: 36  LAKEHKIQIIKVNDLAKIIGNND-HRGFALKLKTLKSNNTKKQDKNLEEFLEEFQHQNNV 94

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR++  F+ D +IT++R S  ++A + +++SGA +++  + + 
Sbjct: 95  FILILDGIEDPQNFGAILRTSEQFNIDLVITSQRRSAKDNATILRTSSGASQYVNKLVVP 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + ++ +   GF         K      I + KIALI+G EGKG+    +E +  +  
Sbjct: 155 NINNVIKYLKKNGFWIYASDIKGKAINTTPINDTKIALIMGNEGKGIHKLIKENSDFLVR 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 215 IPTKGKIDSLNVSVSTGILIF 235


>gi|271968868|ref|YP_003343064.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
           43021]
 gi|270512043|gb|ACZ90321.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
           43021]
          Length = 292

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 6/152 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           VR  + L+VL+ + D  N+GAI R A A   DGII + R +        K + GA+  IP
Sbjct: 126 VRPPRRLLVLEDLVDHGNVGAIFRCAAALGVDGIILSPRCADPLYRRSVKVSMGAVFAIP 185

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG-----LRP 242
           Y R+ N  D L+++ + GFQT+ L+ D    P++     +++AL+LG+EG G     LR 
Sbjct: 186 YARMGNWYDGLEEIRAAGFQTLALTPDQDATPMDTVEMRERVALLLGSEGDGLSSRWLRE 245

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++    M+   M   + +LNV  AAA+A +
Sbjct: 246 ADEQVCIPMSPTAMASGVDSLNVVAAAAIACH 277


>gi|224532019|ref|ZP_03672651.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
           VS116]
 gi|224511484|gb|EEF81890.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
           VS116]
          Length = 246

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 16/201 (7%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLAL------------ETAPL--LSPTLDAVRNSQ 133
                ++ +    +DKI+ K   H+G AL            +T     L  T     N+ 
Sbjct: 39  AQNIKIRRINTNELDKIL-KNKDHRGFALKLKLEKNKNVKTQTKDFEHLLETFKKKENA- 96

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  I ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKKITVA 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  +   GF         +   + +I + KIALILG EG+G+    +E +  +  
Sbjct: 157 NINNTINFLKKNGFWIYAGDVKGQDINKIKINDRKIALILGNEGRGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|313891900|ref|ZP_07825502.1| RNA methyltransferase, TrmH family, group 3 [Dialister
           microaerophilus UPII 345-E]
 gi|313119675|gb|EFR42865.1| RNA methyltransferase, TrmH family, group 3 [Dialister
           microaerophilus UPII 345-E]
          Length = 272

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 129/263 (49%), Gaps = 16/263 (6%)

Query: 25  RNHRDYKKMQS----FNQKSRHTS--QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA 77
           + H++  K Q+    F+QK++  +  + E+LF+ G ++V  ALN N  +KIF  + + N 
Sbjct: 6   KTHKNSNKTQTVKKQFSQKNKRKTLKRSEDLFICGRNSVKEALNENQIKKIF--IKSGNN 63

Query: 78  LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRN 131
             RL     +      PV+    + +DK+      +QG+     P     L   L   + 
Sbjct: 64  DQRLKDIVKIAQNKNIPVEIEEQEILDKM-SDGVRNQGIVASMKPFEYSDLEEVLSKAKE 122

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L+++LD V D  NIGAI+R+A       ++  K  S   +A   K+A+GA  ++P   
Sbjct: 123 DPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPVCE 182

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           I N+   L+ +   GF  +G   + +    +      + +++GAEGKG+   T++    +
Sbjct: 183 IGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDFL 242

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M G + +LNVS AAA+ +Y
Sbjct: 243 VRIPMKGKVSSLNVSVAAALLIY 265


>gi|269217194|ref|ZP_06161048.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
           700122]
 gi|269129331|gb|EEZ60416.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
           700122]
          Length = 263

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 12/196 (6%)

Query: 91  FPVKTVP-PQTIDKIVGKEAVHQGLALETAPL--LSPT--LDAVR-------NSQLLMVL 138
           F V+ VP P+       +   HQG+  ET P    SP+  LD           + L++VL
Sbjct: 46  FDVEVVPVPRKELDAKSERGSHQGVMAETGPYRYASPSDILDEAERHAVDHGGAALVVVL 105

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           DH+ D  N+GAI RSA      GII   + S S +A   KS++G++ H+   +++NL   
Sbjct: 106 DHITDAGNLGAIARSAEVVGASGIIIPNKRSVSVTAATYKSSAGSINHLKIAQVANLNAV 165

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+++   GF   G S  +   + +     KIAL++G EG G+    Q+    +  L   G
Sbjct: 166 LERLKKNGFWVAGASEQAHHTVWKAPLYGKIALVMGNEGSGISHLMQDNCDFLVKLPQEG 225

Query: 259 IIKALNVSNAAAVALY 274
            + +LNV+ A+   +Y
Sbjct: 226 KVGSLNVAQASTAVMY 241


>gi|313203183|ref|YP_004041840.1| RNA methyltransferase, trmh family, group 3 [Paludibacter
           propionicigenes WB4]
 gi|312442499|gb|ADQ78855.1| RNA methyltransferase, TrmH family, group 3 [Paludibacter
           propionicigenes WB4]
          Length = 255

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 13/244 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVP 97
           ++  +PE   ++G+  V  A+    ++I ++L  ++    L+R  + A      PV+ VP
Sbjct: 5   KNKRRPEKDMIFGIRAVIEAIQ-AGKEIDKILMRRDMTSELSRELFAALNGLQIPVQYVP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            + ++K+  K   HQG     +P+       + P +        ++VLD V D  N GAI
Sbjct: 64  LEKLNKMTVKN--HQGAIAFISPVAYQRIEDIIPGIYEEGRMPFIVVLDGVTDVRNFGAI 121

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+      D I+   +   S +    K+++GAL  IP  R  NL +AL+ + S G + +
Sbjct: 122 ARTCECAGVDAIVIPTKGGASITGDAIKTSAGALLSIPVCREENLGNALKFIVSSGIKLV 181

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             S  + K   +    + IA+I+GAE +G+ P        M  + M G I +LNVS AA 
Sbjct: 182 AASEKATKNYTEAALTEPIAIIMGAEDEGVNPDHLRLCDEMVSIPMLGSIDSLNVSVAAG 241

Query: 271 VALY 274
           V +Y
Sbjct: 242 VLIY 245


>gi|312194281|ref|YP_004014342.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
 gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
          Length = 366

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSA 154
           +D++ G  A HQGLAL   P         L   R S   LL+ LD V DP N+GA++RSA
Sbjct: 177 LDRLCGV-APHQGLALVVPPFRYAHPDDLLARARASDPGLLVALDGVTDPRNLGAVVRSA 235

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G++  +R +   +A   K+++GA   +P  R +NL   L+     G   +GL++
Sbjct: 236 AAFGAQGVVVPERRAAGMTAAAWKTSAGAAARLPVARATNLNRTLRSYADGGLVVVGLAA 295

Query: 215 DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++   L+      D I L++G+EG+GL     E    +  + M G +++LN
Sbjct: 296 NADVSLDDLAAATDPIVLVIGSEGRGLSRLVGENCDLLVRIPMAGEVESLN 346


>gi|171920305|ref|ZP_02931653.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|171920685|ref|ZP_02931909.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|185178781|ref|ZP_02964580.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024333|ref|ZP_02997010.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518553|ref|ZP_03004014.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|209554566|ref|YP_002284546.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225550909|ref|ZP_03771858.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|225551088|ref|ZP_03772034.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|171902719|gb|EDT49008.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|171903421|gb|EDT49710.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|184209398|gb|EDU06441.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188019013|gb|EDU57053.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188997944|gb|EDU67041.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|209542067|gb|ACI60296.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225378903|gb|EEH01268.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|225380063|gb|EEH02425.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 239

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 79/144 (54%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++LD + DP N GAI+R+A AF  D II  K +  S + ++ K++ GA+ +I  
Sbjct: 87  KKNALVLILDEIEDPRNFGAIIRTANAFGVDAIIYKKHHQASINDLVIKTSMGAINYIYM 146

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I ++NL++ ++ +   GF     S    +P E+    +K   I+G E KG+ P   + A 
Sbjct: 147 IEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVDYANKTVFIVGNENKGVSPLILKNAD 206

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               + M G +++LNV  A  + L
Sbjct: 207 QSIRIDMFGDVQSLNVGVATGIIL 230


>gi|255022090|ref|ZP_05294094.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968448|gb|EET26006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 250

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 98/168 (58%), Gaps = 4/168 (2%)

Query: 111 HQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           HQGL        AP L+  L+ +    LL++LD + DPHN+GA LRSA A   + ++  K
Sbjct: 67  HQGLVARLLARPAPTLAQVLEDIPAPGLLLILDGILDPHNLGACLRSAEAAGANAVVLPK 126

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
            ++   +A + K+A+GA   +P + ++NL  ++  +  +G+   GL+ ++ + L +    
Sbjct: 127 DHACPVNATVRKAAAGAASRLPIVVVTNLVRSMVGLQEYGYWIAGLAGEASQDLYEADLR 186

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +AL+LG+E KGLR   +E    + H+ M G +++LNVS A A+AL+
Sbjct: 187 GPLALVLGSEEKGLRRLVREHCDFLWHIPMCGAVESLNVSVAGALALF 234


>gi|256374514|ref|YP_003098174.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
 gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
          Length = 321

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 9/181 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRS 153
           +D+I G  A+HQGL L+  P   +   D +R ++      LL+ LD V DP N+GA++RS
Sbjct: 130 LDRITGG-AMHQGLGLQVPPYEYAEPRDLLRAAKESGRPPLLVALDGVTDPRNLGAVVRS 188

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   G++  +R S S +AV  ++++G    +P    +NLT  L++    G   IGL 
Sbjct: 189 AAAFGAHGVVLPQRRSASMTAVAWRTSAGTAARLPIAVATNLTRQLREWAEAGLMVIGLD 248

Query: 214 SDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +D    ++        + +++G+EG+GL    +ET      + M   +++LN S AA V 
Sbjct: 249 ADGDVDVDGLDLATGPLVVVVGSEGRGLSRLVRETCDQTVSIPMASNVESLNASVAAGVV 308

Query: 273 L 273
           L
Sbjct: 309 L 309


>gi|291556790|emb|CBL33907.1| rRNA methylase, putative, group 3 [Eubacterium siraeum V10Sc8a]
          Length = 254

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 24/239 (10%)

Query: 50  FLYGVHTVSAAL--NNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTID 102
            +YG + V+ AL    P   +F L + +      ALA+            VK      + 
Sbjct: 20  IIYGKNAVTEALKAEKPIDTVFVLKSAQGMNQIIALAK-------KQGIVVKDAGEDKLK 72

Query: 103 KIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAILRSAV 155
            + G +  H G+A   + +   T+ D + N++       +++ D + DPHN+GAI+R+A 
Sbjct: 73  ALCGDK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAE 130

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG+I  KR S + +  + K+++GA   I   R+SNL D ++ +   G    G  +D
Sbjct: 131 AAGADGVIIPKRRSATVNPTVFKTSAGAAAWIKIARVSNLVDTIKTLKKHGVWVYGAEAD 190

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              P+++   +  +AL++G+EG GL    +E    +  L M G + +LN S  A + +Y
Sbjct: 191 G-TPIDKADLSGALALVIGSEGFGLGKLVRENCDVVLSLPMFGKVNSLNASVCAGILMY 248


>gi|297700649|ref|XP_002827351.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1,
           mitochondrial-like [Pongo abelii]
          Length = 353

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 38/257 (14%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQT 100
            L+G+     AL    R + +LL           +  L R+    ++P   P +    Q 
Sbjct: 51  LLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRR----QK 106

Query: 101 IDKIVGKEAVHQGLALETAPLL-SPTLDAVRNS------QLLMVLDHVNDPHNIGAILRS 153
           +D +  +  VHQG+ +E +PL   P  +A   S      QL +VLD + DPHN GA+LRS
Sbjct: 107 LDTMC-RYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPHNFGAVLRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTI 210
           A     D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+    T+
Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225

Query: 211 GLSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMP 257
           G  S ++ P   EI          +    L+LG EG GL  + Q +     T +    +P
Sbjct: 226 GCPS-AEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP 284

Query: 258 GIIKALNVSNAAAVALY 274
             +++LNVS AA + L+
Sbjct: 285 PGLESLNVSVAAGILLH 301


>gi|167751286|ref|ZP_02423413.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
 gi|167655793|gb|EDR99922.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
          Length = 254

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 24/239 (10%)

Query: 50  FLYGVHTVSAAL--NNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTID 102
            +YG + V+ AL    P   +F L   +      ALA+            VK      + 
Sbjct: 20  IIYGKNAVTEALKAEKPIDTVFVLKGAQGMNQIIALAK-------KQGIVVKDAGEDKLK 72

Query: 103 KIVGKEAVHQGLALETAPLLSPTL-DAVRNSQ------LLMVLDHVNDPHNIGAILRSAV 155
            + G +  H G+A   + +   T+ D + N++       +++ D + DPHN+GAI+R+A 
Sbjct: 73  ALCGDK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAE 130

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG+I  KR S + +  + K+++GA   I   R+SNL D ++ +   G    G  +D
Sbjct: 131 AAGADGVIIPKRRSATVNPTVFKTSAGAAAWIKIARVSNLVDTIKTLKKHGVWVYGAEAD 190

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              P+++   +  +AL++G+EG GL    +E    +  L M G + +LN S  A + +Y
Sbjct: 191 G-TPIDKADLSGALALVIGSEGFGLGKLVKENCDVVLSLPMFGKVNSLNASVCAGILMY 248


>gi|110835053|ref|YP_693912.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110648164|emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
          Length = 251

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 1/150 (0%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD      LL+VL++V DPHN+GA LRSA A     +I  +R +   + V  ++A GA E
Sbjct: 93  LDGKPAKPLLLVLENVTDPHNLGACLRSADAAGVQAVIVPRRNAAGLTPVACRTAVGAAE 152

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKT 244
            + Y  I NL   L ++   G   +G + + + + L      + +A+++GAEG GL+  T
Sbjct: 153 SLAYYEIGNLASLLDQLRDRGVWVVGTALEERSESLFTFQAPESLAVVMGAEGSGLKRLT 212

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++    +  + M G +++LNVS A  V L+
Sbjct: 213 RDKCDQLLEIPMAGEVQSLNVSVATGVMLF 242


>gi|323142974|ref|ZP_08077682.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
           YIT 12066]
 gi|322417247|gb|EFY07873.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
           YIT 12066]
          Length = 254

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 116/246 (47%), Gaps = 15/246 (6%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKT 95
           R   +     +YGV+ V AAL     KI      K       ++R+    N  +   V+T
Sbjct: 3   RRNGKQNRELVYGVNAVEAALETAPEKIVSAFIIKGREDDKRISRIMALMN-NYGIKVQT 61

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               T+D+I     VHQG+ +E           L   LD + N    +VLD V DP N+G
Sbjct: 62  AMRHTLDEIT-DNGVHQGVVIEMVATPPKNEGDLEELLDTLENP-FFLVLDGVTDPRNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A +RSA A    G+I  K  S S S    K+ASGA + +P   ++NL   L+ +     +
Sbjct: 120 AAMRSAWAAGAHGVIVPKDKSASFSPAARKAASGAADVLPLFAVTNLARTLEMLKERFVR 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            IG+  ++   +        +A+++G+E  G+R  T+E    +  + M   +++LNVS A
Sbjct: 180 VIGMDGEASDNIYATDLTGPLAIVMGSEESGMRRLTREKCDDITKIPMAEGVESLNVSVA 239

Query: 269 AAVALY 274
           A +AL+
Sbjct: 240 AGIALF 245


>gi|298245607|ref|ZP_06969413.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
           racemifer DSM 44963]
 gi|297553088|gb|EFH86953.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
           racemifer DSM 44963]
          Length = 249

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 8/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ-LLMVLDHVND 143
            PV+TVP   +D++  K AVHQG     A     + D      A RN    L++LD + D
Sbjct: 49  IPVETVPRARLDQM-SKGAVHQGCVAVVAEREYASTDDILARAAERNEPPFLLLLDSIQD 107

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
            +N+G++LR+A A    G+I  +  +   +A + K+++GA EHI   R +NLT  +  + 
Sbjct: 108 VNNLGSLLRTAEAAGVHGVIIPEHRAAEVNATVVKTSAGATEHIMIARETNLTRTIDYLK 167

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +GL+ +      Q      +A+++G EGKG+    +E    +  L M G I +L
Sbjct: 168 QQNIWIVGLAGEGDTLYTQANLTGALAVVVGNEGKGMGRLVREHCDVLIKLPMHGYINSL 227

Query: 264 NVSNAAAVALY 274
           N + A ++ LY
Sbjct: 228 NAAVAGSITLY 238


>gi|258655031|ref|YP_003204187.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
           multipartita DSM 44233]
 gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
           multipartita DSM 44233]
          Length = 326

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 11/182 (6%)

Query: 101 IDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +D++ G  A+HQG+AL   P        LLS   D+ R + L++ +D V DP N+GAI+R
Sbjct: 132 LDRLTGN-AIHQGVALVVPPYQYAHPEDLLSRARDSGR-AALIVAVDGVTDPRNLGAIVR 189

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   G++  +R S   +A   ++++G    +   R +NL   L+   + G    GL
Sbjct: 190 SAAAFGAHGVVVPERRSAGMTASAWRTSAGTAARLRVARCTNLVRTLKDYAAQGLMIAGL 249

Query: 213 SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            +D     +  E+    + L++G+EG+GL   T+        + M   +++LN S AA V
Sbjct: 250 DADGTTDTDSFELATSPLVLVVGSEGRGLARLTRTVCDVTVSIPMARSVESLNASVAAGV 309

Query: 272 AL 273
            L
Sbjct: 310 VL 311


>gi|78778102|ref|YP_394417.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498642|gb|ABB45182.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
           1251]
          Length = 226

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 5/184 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F +K +PP    K+  K A HQG+  E    +        N + ++VL  V D  NIGAI
Sbjct: 42  FEIKRIPPDAAGKMC-KNASHQGILAEVDEYVLCNYKTFLNYEFVLVLSGVTDVGNIGAI 100

Query: 151 LRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +R+A A   DG+I     S P E+ V  ++++GAL  +P+    N+ D L  +   GF +
Sbjct: 101 IRTAYALGVDGVIACGVKSLPIEAIV--RTSTGALFDMPFAIEQNVLDVLNDLKMSGFTS 158

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G    +    + +IK  + AL LG+EG+GL  +       +  + M     +LNVS A 
Sbjct: 159 YGADMGATDIRDVKIKQKR-ALFLGSEGEGLTQRVSSKLDELVSIKMSHEFDSLNVSVAG 217

Query: 270 AVAL 273
           A+ +
Sbjct: 218 AILM 221


>gi|313902851|ref|ZP_07836248.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466971|gb|EFR62488.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           subterraneus DSM 13965]
          Length = 306

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 8/190 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAV------RNSQLLMVLDHVNDP 144
           PV  + P  + + V  E  HQG+    APL  P  LD +      R   LL++   + DP
Sbjct: 87  PVTEIDPAELQRRVQTEG-HQGVIALAAPLPQPDPLDLLEVASRRREPPLLVICAGIQDP 145

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GA+ RSA A    G +     S        KS++GAL H+   +++NL   +++   
Sbjct: 146 HNLGAVFRSAEAAGAHGAVVPVHRSAPLGPTAFKSSAGALVHLAVAQVANLNQVVRRFKE 205

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   +    +  +P +Q       AL+LG+EG+G+ P           + M G + +LN
Sbjct: 206 QGVWVVAADPEGAQPYDQWDWTRPTALVLGSEGRGIPPLLLRQCDGRVFIPMAGKVASLN 265

Query: 265 VSNAAAVALY 274
           VS AA + L+
Sbjct: 266 VSVAAGILLF 275


>gi|126662270|ref|ZP_01733269.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
 gi|126625649|gb|EAZ96338.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
          Length = 244

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 117/238 (49%), Gaps = 21/238 (8%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-------NLPHPFPVKTVPPQTIDK 103
           ++G+  +  A+N   ++I ++   K+A   L  D        N+   +    VP + +++
Sbjct: 7   IFGIRAIIEAIN-AKKEIDKVFVQKDAQGDLMQDLMKTMKRNNINFSY----VPVEKLNR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG     AP+   +L+ +           L ++LD ++D  N GAI+R+A  
Sbjct: 62  LTPNN--HQGAVATIAPISFVSLETLVEGVIETGKKPLFLILDQLSDARNFGAIIRTAEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGII  K+ S   +    K+++GA+ ++P  ++ ++ DA+  +   G +T+  +  +
Sbjct: 120 TGVDGIIIQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFYLQGSGIKTVAATEKT 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +     N+ +A+I+G+E +G+ P   +     A L M G I++LNVS A    LY
Sbjct: 180 ENHIYDINFNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIESLNVSVACGAFLY 237


>gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
           curdlanolyticus YK9]
 gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
           curdlanolyticus YK9]
          Length = 281

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 8/193 (4%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHV 141
           H   V+    + +D + G E  HQG+  + A      +   L A +    +  L++LD +
Sbjct: 81  HGIIVQFADKRKLDSMAG-EVAHQGVIAQAAAYRYYEVEEILAAAKAKGETPFLLLLDEI 139

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+G+ILR+A      G+I  KR S   +A ++K ++GA E++P  R++NL   ++ 
Sbjct: 140 EDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVSKISAGAAEYVPVARVTNLAQTIET 199

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G    G    +++ + +   +  + L++G E KG+    +E    +  L M G + 
Sbjct: 200 LKEQGVWIAGADVAAEQDVYRTKFDMPLGLVIGNESKGMGRLIREKCDFLIKLPMAGQLN 259

Query: 262 ALNVSNAAAVALY 274
           +LN S AA V +Y
Sbjct: 260 SLNASVAAGVLMY 272


>gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 310

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 20/267 (7%)

Query: 33  MQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           M+  NQ  R    PE         +YG + V+  L + S     L+A   A A   +   
Sbjct: 42  MEEKNQSRRPRRSPEEPLQKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTA 101

Query: 87  LPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------NSQLLMV 137
           L       VK V P  +  + G E+ HQG+A   + +   T+D +         +  L++
Sbjct: 102 LAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIKYVTVDDLMAAAKDKGEAPFLVL 160

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P  R++N+ +
Sbjct: 161 SDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGE 220

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM- 256
            ++++   G        D    L +      IAL+LG+EG G+    ++    +  L M 
Sbjct: 221 TIRRLKEQGVFVYCADMDGVS-LRRNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMA 279

Query: 257 -PGI-IKALNVSNAAAVALYITQNHFA 281
            PG  + + NVS AA + LY  Q+  A
Sbjct: 280 APGTGVDSYNVSVAAGIILYEIQSQRA 306


>gi|288931919|ref|YP_003435979.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
           DSM 10642]
 gi|288894167|gb|ADC65704.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
           DSM 10642]
          Length = 224

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 1/153 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R +  ++ LD V DP N+GA+LR+A  F C G++  KR +   +  + + + GA  H+
Sbjct: 73  ALRENGFILFLDSVQDPQNLGAVLRTAEFFGCSGVVIPKRRAAQVTETVVEVSQGAAFHL 132

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              R+ NL ++++K+  +GF  +G +    K L        +AL++G E +G+    ++ 
Sbjct: 133 KISRVENLANSIKKIKKYGFLVVG-AEIGGKDLRSVKFTPPLALVVGGEDRGISQPVKKM 191

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  +   G   +LN+S AA + LY  + H 
Sbjct: 192 CDFLVEIKGVGKTPSLNLSVAAGILLYEVRRHL 224


>gi|21674445|ref|NP_662510.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647630|gb|AAM72852.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 257

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 1/154 (0%)

Query: 122 LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L+  L A RNS  LL++L  + DPHN+GAI+R+A A + D +I  +      SA + K++
Sbjct: 96  LNEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTAEAVAADAVIMIEGKGAPISATVHKAS 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +GAL H+   ++ ++  AL  +   GF  +    +++             L++GAEG GL
Sbjct: 156 AGALSHMRVCKVKSVVKALDLLRERGFSIVAADMEAEHNHTDIDWKRPTVLVMGAEGSGL 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +T+     +  + M G +++LNVS AA V LY
Sbjct: 216 GSETRNRCDQIVRIPMAGCVESLNVSVAAGVMLY 249


>gi|313678173|ref|YP_004055913.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
 gi|312950453|gb|ADR25048.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
          Length = 233

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 3/167 (1%)

Query: 111 HQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           HQG  L         +D ++  N + +++LDH+ DPHN GAILR+A A     II  K  
Sbjct: 60  HQGYLLFLKDFNYYEIDIIKKDNPKTVLILDHIQDPHNFGAILRTANAAGIKHIIIPKDR 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND 227
           S   ++ + K +SG    +  I++SN+  ++ K+ SWGF     L   +  P  +   N+
Sbjct: 120 STDVTSTVLKVSSGGFVGVKIIKVSNIVASINKLKSWGFWIYSSLLDQNAVPYNKVEYNE 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             AL++G E KG+      T     ++   G ++++NVS A  + L+
Sbjct: 180 HCALVVGNEEKGISKPIINTTDVKVYIPQFGTVQSMNVSVATGILLF 226


>gi|313671984|ref|YP_004050095.1| RNA methyltransferase, trmh family, group 3 [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938740|gb|ADR17932.1| RNA methyltransferase, TrmH family, group 3 [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 230

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 2/169 (1%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           GK+A  QG A E         +  +NS  + +LDH+ DPHN GAI+R+   F     I  
Sbjct: 56  GKDA--QGYAFEFEVEYCDLDELGQNSGNICILDHIQDPHNFGAIVRAGHCFGVRNFIIA 113

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K      + V+ KS++GA  +  +  + N+  +++++   G+       + +  L     
Sbjct: 114 KDNQSPVTPVVVKSSAGAAIYSRFYEVVNINRSIEELKEKGYWIYAADMNGETKLGDIRP 173

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           N+   +I+G+EG+G+R    + A  +  + M G+I +LN S +AA+A Y
Sbjct: 174 NEPYVVIIGSEGEGIRKNVLKKADVVFRIPMRGVIDSLNASQSAAIAFY 222


>gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
           ATCC 35580]
 gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
           ATCC 35580]
          Length = 274

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 1/147 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R    ++VLD + DPHN GAI+RSA  FS D ++  +R S  +   ++K ++GA   +
Sbjct: 121 ASREKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGAAAWV 180

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P +  +NL   ++++   GF   G  +   +PL      DK  LI+G+EG G+    + +
Sbjct: 181 PLLYTANLVRTVEELKRNGFWVFGADAQG-EPLPHTKFPDKTLLIMGSEGSGISRLLKTS 239

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
             S   +   G + +LNVS AA + +Y
Sbjct: 240 CDSFTAIPTSGKLDSLNVSVAAGILMY 266


>gi|269926933|ref|YP_003323556.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790593|gb|ACZ42734.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 264

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 116/237 (48%), Gaps = 13/237 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLP--HPFPVKTVPPQTIDKI 104
           +++YG + V   L    RK+++LL   + +A   L+   +L       ++ V    +D++
Sbjct: 21  VYIYGRNAVRECLLAGRRKVYRLLVAYSHSASQTLEAIESLAARSGLQIERVERSILDRL 80

Query: 105 VGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+ +E +     +++       +R   +LM LD + DP N G +LR+A  F 
Sbjct: 81  T-HGANHQGVVIEASEFSYSSIEDLLASGELRGKDILM-LDSLQDPQNFGTLLRTAEVFG 138

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +  +  ++SGA EH+   +++NL     K+  +G+  +GL  D   
Sbjct: 139 IGAVIIPEHRSVEVTPAVVNASSGATEHLNISKVTNLARTASKLKEYGYWVLGLEYDESS 198

Query: 219 PLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  ++     I L++G+EG G+R   ++    +  +   G I +LN + A ++ALY
Sbjct: 199 SVIWDVDLRIPICLVVGSEGSGIRELVRKRCDLLVKIPQAGRIGSLNAAVAGSIALY 255


>gi|160902072|ref|YP_001567653.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160359716|gb|ABX31330.1| RNA methyltransferase, TrmH family, group 3 [Petrotoga mobilis
           SJ95]
          Length = 240

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 4/167 (2%)

Query: 111 HQGLALETA-PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           HQG+ ++         LD +   +   L++LD + DPHN GAI+R++VA   D II  K 
Sbjct: 65  HQGIVIDIGNDFKYENLDIIEGKEKLFLVILDQIQDPHNFGAIVRTSVAAGVDAIIIPKD 124

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   + V+ K +SG +  IP I+++NL++ ++ +        G   + K   E + +  
Sbjct: 125 NAVEVTPVVIKVSSGQIFKIPIIKVTNLSNTIETLKKENVWVYGADVEGKPYYEIDWQG- 183

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           KI L+ G EG G+R   +     +  + M   +++LNVS ++ + L+
Sbjct: 184 KICLVFGNEGNGIRKNVKNHCDELVSIPMFNNVESLNVSVSSGIILF 230


>gi|139438525|ref|ZP_01772041.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
           25986]
 gi|133776064|gb|EBA39884.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
           25986]
          Length = 302

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 12/241 (4%)

Query: 38  QKSRHTSQ-PENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFP 92
           Q++R   Q P+  F+ G    + AL         L+A       AL+RL  D N      
Sbjct: 44  QRNRDNVQAPKGEFIEGRRAAAEALRTGFPVKCALIAEGGERDAALSRLVDDLNAAG-VR 102

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLD-AVRNSQLLMVLDHVNDPHNI 147
           +K VP   +D +      HQG+ALE        ++  LD A     L++VLDHV D  N 
Sbjct: 103 IKYVPRAQLDAL-SSHGAHQGIALEVGNFPYADVADILDRAGDGPALVVVLDHVTDDGNF 161

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RSA      G+I   + +   +    K+++GA+ H+P  ++ N+  AL  + + GF
Sbjct: 162 GAIVRSAEVVGAAGVIIANKRAAGVTVGSYKTSAGAVMHLPIAQVPNIARALDDLKAAGF 221

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G S  ++          ++AL++G+EG G+     E    +  L   G+ ++LNV+ 
Sbjct: 222 WVSGASERAEGSCWDAPFEGRVALVMGSEGDGISRLVLEKCDFLTKLPQRGMTESLNVAQ 281

Query: 268 A 268
           A
Sbjct: 282 A 282


>gi|91216066|ref|ZP_01253034.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
 gi|91185583|gb|EAS71958.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
          Length = 249

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDK 103
           E+  ++G+H++  AL       KI  L  + N  L  ++  A   +   V  VP Q   K
Sbjct: 3   ESHVIFGIHSIVEALRQGKDIEKIILLRDSDNPKLKEIEGLAE-QNTIKVSYVPIQKFKK 61

Query: 104 IVGKEAVHQGLALETAPL----LSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156
              ++  HQG    T+ +       T++ V   +   L ++LD + D  N+GAILR+A  
Sbjct: 62  Y--EQLNHQGAIAHTSKISYSDFEETVEKVLEIKEKPLFLLLDGITDVRNLGAILRTAEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  K  S   +    K+++GA  +IP  ++++L DAL  + S G + + ++  +
Sbjct: 120 TGVDAVILPKSGSAQVNNETIKTSAGAAFNIPICKVNHLKDALFYLKSSGVEIVAVTEKT 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + +   N  +AL++G EG+G++P   + A     L M G I++LNVS A  V LY
Sbjct: 180 NTSVYELELNKPLALLMGGEGEGIQPSILKMADVKGKLPMLGSIESLNVSVACGVILY 237


>gi|313676227|ref|YP_004054223.1| RNA methyltransferase, trmh family, group 3 [Marivirga tractuosa
           DSM 4126]
 gi|312942925|gb|ADR22115.1| RNA methyltransferase, TrmH family, group 3 [Marivirga tractuosa
           DSM 4126]
          Length = 258

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 14/251 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHP 90
           M +FN++ +   +    +++G   V  A+        I+     +N L     D      
Sbjct: 1   MTAFNKRPKLNDKD---YIFGTRAVIEAIHAGKEMDNIYIDKEVRNDLVSELMDLCKEQK 57

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVND 143
            P   VP + +++I  K   HQG+    + +   +LD V N         L+++LD V D
Sbjct: 58  VPFTKVPIEKLNRITMKN--HQGVIAMVSAVSYASLDNVINEAYAKGKDPLILILDRVTD 115

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N GAI RSA     D I+   + S   ++   K+++GAL +IP  R ++L + ++ + 
Sbjct: 116 VRNFGAIARSAECAGVDAIVIPFKGSAQINSDAVKTSAGALHYIPVCRENSLKNTVEYLQ 175

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +  +   K  +        +A+ILG+E  G+      TA  +A + M G I +L
Sbjct: 176 KSGLQVVACTEKGKDLIYNTPMAQPLAIILGSEEDGISNDLIRTADFLAKIPMTGKIASL 235

Query: 264 NVSNAAAVALY 274
           NVS + A+A++
Sbjct: 236 NVSVSCAIAVF 246


>gi|302339680|ref|YP_003804886.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636865|gb|ADK82292.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 252

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 31/246 (12%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLPHPFPVKTVPPQTIDK 103
           +YG H +  AL    R    +++ K+       ALA             V+ V  + +D 
Sbjct: 7   IYGFHAIEEALKKRHRGAELMVSGKSKRISALIALAE-------QKGCKVRNVSREELDD 59

Query: 104 IVGKEAVHQGLALETAPLLS-----PT---LDAV------RNSQ-LLMVLDHVNDPHNIG 148
           + G    H+G+ L  +  +S     PT    D V      R  Q L+++LD + DP N+G
Sbjct: 60  LSGG-VDHRGVLLFLSDAVSSGRKPPTNRDFDTVLQQLATREEQALILLLDGITDPQNLG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA  F+ D ++  +R S  + AV+ K ++GA  H+P   + N+  A++ +   GF 
Sbjct: 119 AILRSADQFAVDLVVLPERRSAGDGAVVDKVSAGASLHVPRSVVPNIPRAVEGLKKAGFW 178

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G            +K  K+A++LGAEG+G+    +E    +  +   G I + NVS A
Sbjct: 179 VYGADMGGGSAWNFSLKG-KVAMVLGAEGRGIGRLVRERCDEIISIPSRGHIDSFNVSVA 237

Query: 269 AAVALY 274
             + LY
Sbjct: 238 GGILLY 243


>gi|51894250|ref|YP_076941.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51857939|dbj|BAD42097.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 246

 Score = 88.6 bits (218), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD + DP N+G++LR+A A    G+I  +R +   +  +AK ++GA+E++P  R++
Sbjct: 96  LLLVLDGIEDPQNLGSLLRTADAAGVHGVIIPERRAVGLTETVAKVSAGAVEYVPVARVT 155

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   L+ +   G+  +G   ++ +   +      +A+++G+EG+G+     ET      
Sbjct: 156 NIARTLEMLKERGYWVVGTHQEADELYYEARLTGPLAVVIGSEGRGMSRLVAETCDFTVR 215

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L M G + +LN + A A+ LY
Sbjct: 216 LPMRGHVTSLNAAVAGAILLY 236


>gi|258545032|ref|ZP_05705266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
           hominis ATCC 15826]
 gi|258519730|gb|EEV88589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
           hominis ATCC 15826]
          Length = 243

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 5/188 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHN 146
            PV+TV    I+ ++     HQG+A   E     +   DA+   +  LL+VLD + DPHN
Sbjct: 48  VPVETVALYEIEMML-PGVRHQGVAAVSEARGQAADWADAIAGVEKPLLLVLDSIQDPHN 106

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA LRSA A     ++     +   + V+ K A GA E +P  R+SNL   +++M   G
Sbjct: 107 LGACLRSAAAAGVHAVLIPNSRAADVTPVVEKVACGATEILPLFRVSNLRREVERMQRQG 166

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +G +  + + L        +A+I+G EG+G+R   +E    +  + M   +++LNVS
Sbjct: 167 IWVVGGAGGAAQSLYATDLTVPLAVIVGNEGEGIRHGLREQCDFLVQIPMAEGMESLNVS 226

Query: 267 NAAAVALY 274
            A  V L+
Sbjct: 227 VACGVMLF 234


>gi|240146531|ref|ZP_04745132.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
           L1-82]
 gi|257201342|gb|EEU99626.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
           L1-82]
 gi|291535116|emb|CBL08228.1| rRNA methylase, putative, group 3 [Roseburia intestinalis M50/1]
          Length = 246

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L +LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GA+ + P  +++
Sbjct: 99  FLFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NLT  ++++   G   +    D     + ++K   I L++G+EG+G+    +E    +A 
Sbjct: 159 NLTATMKELKDKGMWFVCADMDGTCMYDLDLKG-PIGLVIGSEGEGVGRLVRENCDFVAS 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238


>gi|219685096|ref|ZP_03539916.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
           Far04]
 gi|219673192|gb|EED30211.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
           Far04]
          Length = 246

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D ++TT++ S  ++  + +++SGA +++  I ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVVTTQKRSAKDNLTVLRTSSGASQYVKKITVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  +   GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 157 NINNTIYSLKKHGFWIYAGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
           16795]
 gi|164604519|gb|EDQ97984.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DPHN+G I+R+A A    G+I  KR S   ++V+AK+++GA+E++P  +++
Sbjct: 99  FFIILDEITDPHNLGTIIRTADAVGAHGVIIPKRRSVHITSVVAKASAGAVEYVPVCKVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + ++++   G        D     EQ++    +AL++G+EG G+    ++    +  
Sbjct: 159 NIANTIKQLKKEGLWIAAADMDGGVFYEQDLTG-PLALVIGSEGFGVSRLVKQNCDFVVK 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LN S A  + LY
Sbjct: 218 MPMIGNVSSLNASVAGGILLY 238


>gi|118443866|ref|YP_877180.1| RNA methyltransferase [Clostridium novyi NT]
 gi|118134322|gb|ABK61366.1| RNA methyltransferase, TrmH family, group 3 [Clostridium novyi NT]
          Length = 265

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+     P     ++ + N          ++VLD + DPHN+G+I+R+A      GI+
Sbjct: 87  HQGVMAIVTPFKYSQIEDIFNYAKEKGEEPFILVLDEIEDPHNLGSIMRTAEICGVHGIV 146

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA E++   +++N+  A+ ++   G    G   D +    Q 
Sbjct: 147 IPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAIDEIKERGIWVYGADMDGENYCFQT 206

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +AL++G+EGKG+   T++    +  + M G I +LN S AA + +Y
Sbjct: 207 NFKGAVALVIGSEGKGISKLTKQKCDVLIKIPMVGKITSLNASVAAGIMMY 257


>gi|219684256|ref|ZP_03539200.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
 gi|219672245|gb|EED29298.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
          Length = 246

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D ++TT++ S  ++  + +++SGA +++  I ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVVTTQKRSAKDNLTVLRTSSGASQYVKKITVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  +   GF         +   + +I + KIALILG EGKG+    +E +  +  
Sbjct: 157 NINNTIYSLKKHGFWIYAGDIKGQDINKIKINDKKIALILGNEGKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|218283694|ref|ZP_03489655.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
 gi|218215683|gb|EEC89221.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
          Length = 147

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 76/142 (53%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +D + DPHN+GAILR+      DG+I TK  S   +  + K+++GA   +P   ++NL+ 
Sbjct: 1   MDGIQDPHNVGAILRTCDCAGVDGVILTKHNSCGLTPTVVKASTGAAYTVPVSIVTNLSQ 60

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L+ +   G+  +G      +   + + +    L++G+EG+G+    ++    M +L M 
Sbjct: 61  TLRNLKQEGYWVVGTDMKDAREYREGMYDSPTVLVIGSEGQGISNLVKKQCDYMVYLPMV 120

Query: 258 GIIKALNVSNAAAVALYITQNH 279
           G I +LN S AAA+ +Y   N 
Sbjct: 121 GSITSLNASVAAAILMYEVYNQ 142


>gi|218134245|ref|ZP_03463049.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991620|gb|EEC57626.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 11/237 (4%)

Query: 47  ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V+ AL +  P  K+F L   ++   R        H   +  V  + +D +
Sbjct: 6   EELTIEGRNAVTEALRSGRPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVSKERLDSM 65

Query: 105 VGKEAVHQGL----ALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      +   LDA         + +LD + DPHN+GAI+R+A   
Sbjct: 66  -SETGKHQGVIAYAAAYEYAEVQDILDAAGEKGEPPFIFILDGIEDPHNLGAIIRTANLA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GA+ + P  +++N+   ++++   G   +  + D +
Sbjct: 125 GAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNIAQTIEELKKEGMWFVCAAMDGE 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ++K   I L++GAEG+G+    +E     A + M G I +LN S AA V  Y
Sbjct: 185 VMYNLDLKG-PIGLVIGAEGEGVSRLVREKCDFTASIPMKGNIDSLNASVAAGVLAY 240


>gi|34541459|ref|NP_905938.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|34397776|gb|AAQ66837.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
          Length = 249

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++G+H++S A        KIF     K           +    PV  VP + +D++  K
Sbjct: 6   MIFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTSK 65

Query: 108 EAVHQGL-----ALETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+     A+E   L  L P L     +  L++LD + D  N GAI R+A     D
Sbjct: 66  N--HQGVVAILSAIEYTRLDQLMPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S S      K+++GAL  IP  R++++  A++ +  +G + +  S  +    
Sbjct: 124 AIIIPERGSVSVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLY 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   + +++GAE  G  P T   A  +  +   G I +LNVS AA + +Y
Sbjct: 184 TDVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIY 237


>gi|203284425|ref|YP_002222165.1| rRNA methylase [Borrelia duttonii Ly]
 gi|201083868|gb|ACH93459.1| rRNA methylase [Borrelia duttonii Ly]
          Length = 244

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 14/201 (6%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-----------LSPTLDAV--RNSQ 133
           L     +K +    + KI+G    H+G AL+   L           L   L     +N+ 
Sbjct: 36  LARQHNIKIIKINDLTKILGNNN-HRGFALKLQNLKDYNTINKNKNLEEYLKEFQHKNNI 94

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD + DP N GAILR+A  F+ D +IT +R S  ++  + +++SGA +++  + + 
Sbjct: 95  LILILDSIEDPQNFGAILRTAEQFNIDLVITNQRKSVKDNETVLRTSSGASQYVNKLTVP 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + ++ +   GF         +     +I ++KIALI+G EGKG+    +  +  +  
Sbjct: 155 NINNVIRYLKKQGFWIYASDIKGQAINNTKITDNKIALIMGNEGKGIHNLLKNNSDFLIK 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 215 IPTKGKIDSLNVSVSTGILIF 235


>gi|289422574|ref|ZP_06424417.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
 gi|289157146|gb|EFD05768.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
          Length = 244

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 93/173 (53%), Gaps = 12/173 (6%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+   T+      LS  L   R  +     ++LD + DPHN+G+I+R+A A    GII
Sbjct: 65  HQGVIALTSDYVYYELSDILKKAREKEEDPFFIILDGITDPHNLGSIIRTADAVGAHGII 124

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLE 221
             KR S   + ++AK+++GA+E++P  +++N+ + ++++   G     + +  D+     
Sbjct: 125 IPKRRSVHITPIVAKASAGAVEYVPVCKVTNIVNTIKQLKEEGLWIAAVDMGGDA---FY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q      +AL++G+EG+G+   T+E       + M G + +LN S A  + LY
Sbjct: 182 QTNLTGPLALVVGSEGEGISRLTKENCDFTVSMPMSGNVTSLNASVAGGILLY 234


>gi|284989250|ref|YP_003407804.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
           obscurus DSM 43160]
 gi|284062495|gb|ADB73433.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
           obscurus DSM 43160]
          Length = 319

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 8/166 (4%)

Query: 109 AVHQGLALETAPLL----SPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A+HQG+ L+  P         LD  R+S    L++ +D V DP N+GA++RSA AF   G
Sbjct: 139 ALHQGIGLQVPPYQYAHPDDLLDLARDSGRPPLVVAMDGVTDPRNLGAVVRSAAAFDAHG 198

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   +A   ++++GA   +P  R  NL  AL      G  T+GL+ D    L 
Sbjct: 199 VVVPQRRSVGMTASAWRTSAGAAARLPVARAVNLARALASYQDAGLMTVGLAGDGDVDLH 258

Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +   D +AL++GAEG GL    +E    +  + +    ++LNVS
Sbjct: 259 DFDGFPDPLALVVGAEGAGLSRLVRERCDVVVRIPIARDTESLNVS 304


>gi|254784758|ref|YP_003072186.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
 gi|237686894|gb|ACR14158.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
          Length = 247

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105
            ++G+H V + L    ++I +L   K+     + +L   A   H   V  V  Q ++   
Sbjct: 5   VIFGIHAVQSLLKTAPQRISELQVVKDRQDQRIKKLLAMAE-AHGVRVSLVNRQQLESAA 63

Query: 106 GKEAVHQGL--------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           G +  HQG+        AL+   LL   +  +    L++VLD V DPHN+GA +RSA A 
Sbjct: 64  G-DGNHQGVIAYAKPGKALDEKGLLD-LIAQMEEDPLILVLDGVTDPHNLGACMRSADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++  K  S   +    K A GA E +P + ++NL  AL K+   G    G + ++ 
Sbjct: 122 GVHAVVIPKDNSAGLNETARKVACGAAETVPLVVVTNLARALNKLQDAGLWVAGAAGEAD 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +          +++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+
Sbjct: 182 ADIYSADLTGPRVIVMGAEGDGMRRLTKETCDLLIKIPMMGSVSSLNVSVATGVVLF 238


>gi|13357681|ref|NP_077955.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761850|ref|YP_001752207.1| RNA methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508755|ref|ZP_02958228.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|11357049|pir||A82931 rRNA methylase UU124 [imported] - Ureaplasma urealyticum
 gi|6899082|gb|AAF30530.1|AE002113_4 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827427|gb|ACA32689.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|182675688|gb|EDT87593.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
          Length = 239

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 78/144 (54%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++LD + DP N GAI+R+A  F  D II  K +  S + ++ K++ GA+ +I  
Sbjct: 87  KKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINYIYM 146

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I ++NL++ ++ +   GF     S    +P E+    +K   I+G E KG+ P   + A 
Sbjct: 147 IEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKVDYANKTVFIVGNENKGVSPLILKNAD 206

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               + M G +++LNV  A  + L
Sbjct: 207 QSIRIDMFGDVQSLNVGVATGIIL 230


>gi|329121964|ref|ZP_08250576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
           micraerophilus DSM 19965]
 gi|327467262|gb|EGF12765.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
           micraerophilus DSM 19965]
          Length = 272

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 130/263 (49%), Gaps = 16/263 (6%)

Query: 25  RNHRDYKKMQS----FNQKSRHTS--QPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA 77
           + H++  K Q+    F+QK++  +  + E+LF+ G ++V  ALN N  +KIF  + + N 
Sbjct: 6   KTHKNSNKTQTVKKQFSQKNKRKTLKKSEDLFICGRNSVKEALNENQIKKIF--IKSGNN 63

Query: 78  LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RN 131
             RL     +      P++    + +DK+      +QG+     P     L+ V    + 
Sbjct: 64  DQRLKDIVKIAQNKNIPIQIEEQEILDKM-SDGVRNQGIVASMKPFEYSDLEEVLLKAKE 122

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L+++LD V D  NIGAI+R+A       ++  K  S   +A   K+A+GA  ++P   
Sbjct: 123 DPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPVCE 182

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           I N+   L+ +   GF  +G   + +    +      + +++GAEGKG+   T++    +
Sbjct: 183 IGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCDFL 242

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M G + +LNVS AAA+ +Y
Sbjct: 243 VRIPMKGKVSSLNVSVAAALLIY 265


>gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
           bacterium Broad-1]
 gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
           bacterium Broad-1]
          Length = 318

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 5/146 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD V DP N+GAI+RSA AF   G++  +R +   +A   K+++GA   IP  +  
Sbjct: 166 LIVALDQVTDPRNLGAIVRSAAAFGAHGVVIPERRAAGMTAAAWKTSAGAASRIPVAQTV 225

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-----LILGAEGKGLRPKTQETA 248
           NLT  L+     G   +GL  +    L +    D +A     +++GAEG GL    QET 
Sbjct: 226 NLTRQLKAYQDAGCMVVGLDMEGDITLPELGAPDGLADGPLVIVVGAEGGGLSRLVQETC 285

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M   +++LN   AA+V LY
Sbjct: 286 DQIVSIPMANSVESLNAGVAASVVLY 311


>gi|146329073|ref|YP_001209512.1| RNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|146232543|gb|ABQ13521.1| RNA methyltransferase, TrmH family, group 3 [Dichelobacter nodosus
           VCS1703A]
          Length = 242

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 8/233 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +++ G+H +  ALN+ +    ++   K +  LA L  DA       + TVP   ID  +
Sbjct: 3   TIWIGGIHALRQALNDGNLLRLEVSEGKTSKNLASLVADAKAAQ-IEIITVPRHYIDHRL 61

Query: 106 GKEAVHQGLALET--APLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +  HQG+A E   +   S    A+   +   ++VLD + DPHN+GA LR+A+A   D 
Sbjct: 62  -PDVRHQGIAGECRLSAQASNWQQAISGVERPFILVLDSIQDPHNLGACLRTAMAAGVDA 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++     +   + V+ K A GA E +   R++NL   ++ M   G   +G + +++K L 
Sbjct: 121 VVLPNSCAADITPVVRKIACGAAEALAIFRVANLKREVEMMKEKGLWVVGGAGEAEKSLF 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  + +I+G E KG+    ++T   +A + M   +++LNVS A  + L+
Sbjct: 181 DLDLSGGLVMIVGNEEKGIHYGLRQTCDWLAAIPMAETMESLNVSVACGIMLF 233


>gi|224534716|ref|ZP_03675288.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
           A14S]
 gi|224513964|gb|EEF84286.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
           A14S]
          Length = 246

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 89/147 (60%), Gaps = 4/147 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +  +++LD + DP N+GAILR+A  FS D +ITT++ S  +++ + +++SGA +++  
Sbjct: 93  KENAFILLLDEIEDPQNLGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVKK 152

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND-KIALILGAEGKGLRPKTQET 247
           I ++N+ + +  +   GF     +SD K     +IK ND KIALILG EGKG+    ++ 
Sbjct: 153 ITVANINNTIIFLKKHGFWI--YASDIKGQDINKIKINDKKIALILGNEGKGVHKLIKQN 210

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  +   G I +LNVS +  + ++
Sbjct: 211 SDFLIRIPTSGKIDSLNVSVSTGILIF 237


>gi|168043421|ref|XP_001774183.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674451|gb|EDQ60959.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 280

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 123/268 (45%), Gaps = 31/268 (11%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------- 80
           D+ K ++ N +       E   +YGV  + AA     R+IF  L  +  L          
Sbjct: 5   DWPKREAVNWRV------EGEAVYGVAPIRAAFL-AERRIFHTLYVQTNLVDNIATGKRK 57

Query: 81  ----LDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVR--- 130
               ++W  N  H     V+TV  Q ++ +V     HQGL L+ +PL L P     R   
Sbjct: 58  DKQAVNWILNRAHNLEMKVETVSKQHLNLLVDNRP-HQGLVLDASPLELVPCEYLERPSI 116

Query: 131 ---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               S + + LD V DP N GAILRS       G++   + S   S V++K+++GALE +
Sbjct: 117 QDGRSPVWVALDEVIDPQNFGAILRSCHYLGATGVVVCAKNSAPLSGVVSKASAGALEVM 176

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 N+   L      G++ +G SS+ +  P+++        L+LG EG+GLR   + 
Sbjct: 177 EIQSCRNMMKFLDTSVQNGWRAVGASSEPRALPIQELEPGLPTILVLGNEGRGLRTNVKR 236

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
           + T +  +     + +LNVS AA + L+
Sbjct: 237 SCTELVSIKADA-VDSLNVSVAAGILLH 263


>gi|307701543|ref|ZP_07638560.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           FB024-16]
 gi|307613222|gb|EFN92474.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           FB024-16]
          Length = 354

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+ LD V DPHN+GA+LRSA AF  DG+I  +  + S +A   K ++GA   +P  + +
Sbjct: 207 LLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQAT 266

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT ALQ +   G   IGL       L + ++ +  + ++ G+EG+G+    ++T   + 
Sbjct: 267 NLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQIV 326

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + +   +++LN + A  +ALY
Sbjct: 327 SIPIAPRMESLNAAVATGIALY 348


>gi|321472146|gb|EFX83117.1| hypothetical protein DAPPUDRAFT_302082 [Daphnia pulex]
          Length = 308

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 41/265 (15%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLD------WDANLPHPFPVKT--VPP 98
            LYG+H +S AL    R I  +   ++ L    R+       W+ N      +KT  +P 
Sbjct: 45  ILYGIHPISCALEAKRRTIETVYYRRDLLNHSGRVKEILERCWEEN------IKTLPIPS 98

Query: 99  QTIDKIVGKEAVHQGLALETAPLL---SPTLDAVR--------NSQLLMVLDHVNDPHNI 147
             ID IV K   HQGL  +T  L    +P   ++         +  + ++L+ + DP N 
Sbjct: 99  SKIDTIVPKGKPHQGLLAKTTRLYYIPTPCTQSIAQLSSEKEASKPVWLLLNEIQDPMNF 158

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILRSA    CD I  T   S S + V++K++SG +E +P   I N T+  Q +    +
Sbjct: 159 GSILRSAYFMGCDKIFVTSHKSCSLTPVVSKASSGVMELMPIHSIMNTTEFCQLLKESKW 218

Query: 208 QTIGLSSDSKK---------PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL---- 254
             +G  S + +         P+     ++   +ILG EG+GL  +  +  T   ++    
Sbjct: 219 DVVGTGSKTDESNGTACKPTPVGSFQLSNPTLIILGNEGRGLPDELVDLCTHQIYVESRS 278

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
           ++   + ++NVS AAAV L+   N+
Sbjct: 279 NLNKNVDSMNVSAAAAVILHSVLNN 303


>gi|293363662|ref|ZP_06610412.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
           A21JP2]
 gi|292552769|gb|EFF41529.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
           A21JP2]
          Length = 231

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 113/231 (48%), Gaps = 14/231 (6%)

Query: 49  LFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           L + G ++V  A NN  P  K+F L        +          FPV+ +  + +++   
Sbjct: 4   LIMCGKNSVVDAYNNNWPIEKVFLLHEQNKKFFK-------NAKFPVEVIRKEKMEEWTN 56

Query: 107 KEAVHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +   HQG       +    L++  +   +L++VLDH+ DPHN+GAI+RSA A     II 
Sbjct: 57  EN--HQGFLATIKEINYSNLNSLIIDKPKLVLVLDHIQDPHNLGAIIRSANAAGVKHIIL 114

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +  S   ++ + K +SG    I +IR+++++  +  + +  F     + D K     ++
Sbjct: 115 PRDRSAEINSTVIKVSSGGFIGIKFIRVNSVSATINFLKNNNFWVYASALDKKAQAYNQV 174

Query: 225 K-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++ALI+G EG G+   T   A    ++   G +++LNVS A  + L+
Sbjct: 175 SYSEQVALIVGNEGNGVSKSTLNMADQKIYIEQFGTVQSLNVSVATGILLF 225


>gi|256397252|ref|YP_003118816.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
           acidiphila DSM 44928]
 gi|256363478|gb|ACU76975.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
           acidiphila DSM 44928]
          Length = 339

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 9/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVND 143
            P+   P   +D++     +HQG+ L   P        L   + A  ++ L   LD V D
Sbjct: 138 VPLLEAPRHELDRMT-NGTLHQGVMLVMPPYEYAHPDDLLEEVFAAGDTPLFAALDGVTD 196

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA++RS  AF   G+I  +R +   +A   K+A+GA   +P  R  NLT AL+   
Sbjct: 197 PRNLGAVMRSVAAFGGHGVIVPERRAAGMTAGAWKAAAGAGARLPVARAGNLTRALEAYK 256

Query: 204 SWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G    GL++D   PL E EI  + + L++G+EGKG+     E       + +    ++
Sbjct: 257 KQGVMVAGLAADGSVPLHELEIATEPLCLVIGSEGKGMSRLVSELCDVTVSIPIASTTES 316

Query: 263 LNVSNAAAVALY 274
           LN   AA +ALY
Sbjct: 317 LNAGVAAGIALY 328


>gi|326334732|ref|ZP_08200939.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325693182|gb|EGD35114.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 251

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 19/241 (7%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQT 100
           +N  ++G+H V  A+       KIF     K AL      L    +LPH +    VP + 
Sbjct: 7   KNTQIFGLHPVIEAIEAGKTIDKIFIQKGLKGALFSQLLSLVETYHLPHSY----VPIEK 62

Query: 101 IDKIVGKEAVHQGLA-----LETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRS 153
           + ++      HQG+      +E  PL    L  + + +  L ++LDH++D  N+GAI+R+
Sbjct: 63  LQRL--TRGNHQGIVALLSPVEFVPLEELVLSTIESGRVPLFLILDHLSDVRNVGAIIRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     +GI+  K+ S S    + K+++GA+ ++P  ++ NL DA+  +   G + +G +
Sbjct: 121 AECTGVNGILLPKQGSASIGEDMVKTSAGAIFNLPLCKVDNLIDAIYYLQGSGIKVLGAT 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +   L     ++ +A+++GAE  G+     +     A L + G   +LNVS A    L
Sbjct: 181 EKASSLLYDFSLSEPLAIVMGAEDTGISKGVLKVLDEKAKLPLQGETSSLNVSVACGAFL 240

Query: 274 Y 274
           Y
Sbjct: 241 Y 241


>gi|227876792|ref|ZP_03994901.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
 gi|227842689|gb|EEJ52889.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
          Length = 354

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+ LD V DPHN+GA+LRSA AF  DG+I  +  + S +A   K ++GA   +P  + +
Sbjct: 207 LLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQAT 266

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT ALQ +   G   IGL       L + ++ +  + ++ G+EG+G+    ++T   + 
Sbjct: 267 NLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQIV 326

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + +   +++LN + A  +ALY
Sbjct: 327 SIPIAPRMESLNAAVATGIALY 348


>gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum ATCC 27405]
 gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 1313]
          Length = 277

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 83/140 (59%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD + D +N+G+ILR+A A    G++  KR +   +A ++K+++GA+E++P  R++N
Sbjct: 130 IIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAGAIEYVPVARVTN 189

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           ++  ++ +       +G     +KP  +      +AL++G+EG+G+     E    + ++
Sbjct: 190 ISQTIEYLKKKNIWIVGTDLSGEKPFFEADLKGPVALVIGSEGEGMGRLVSEKCDFIVNI 249

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G I +LN + AAA+ +Y
Sbjct: 250 PMQGKISSLNAAVAAAIIMY 269


>gi|269976319|ref|ZP_06183315.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           28-1]
 gi|306817739|ref|ZP_07451481.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|269935648|gb|EEZ92186.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           28-1]
 gi|304649553|gb|EFM46836.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 354

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 81/142 (57%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+ LD V DPHN+GA+LRSA AF  DG+I  +  + S +A   K ++GA   +P  + +
Sbjct: 207 LLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVPVAQAT 266

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT ALQ +   G   IGL       L + ++ +  + ++ G+EG+G+    ++T   + 
Sbjct: 267 NLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDTCDQIV 326

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + +   +++LN + A  +ALY
Sbjct: 327 SIPIAPRMESLNAAVATGIALY 348


>gi|149177691|ref|ZP_01856292.1| YacO [Planctomyces maris DSM 8797]
 gi|148843509|gb|EDL57871.1| YacO [Planctomyces maris DSM 8797]
          Length = 261

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 4/168 (2%)

Query: 111 HQGLALETAPLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           HQG+  + AP    +++        S L ++LD + DP N GAI+RSA     DGI +  
Sbjct: 85  HQGMIAKMAPFPYTSIELFNQQEITSPLFLILDRIQDPFNFGAIIRSAEIMGADGIFSGT 144

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
                 ++++ ++++GA+ H+P ++ ++L    +     G   +G +  + + L      
Sbjct: 145 HEQCEVTSLVCRTSAGAVNHVPLVQATDLVSLCRDWKQNGINIVGTAMQASEKLNDYNFQ 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A+I+G EG G+ P+ Q   T +  +   G  ++LNV+ +A++ LY
Sbjct: 205 QPTAVIVGNEGTGISPELQAECTHLVRIPQQGKTESLNVAVSASILLY 252


>gi|289450233|ref|YP_003475064.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184780|gb|ADC91205.1| RNA methyltransferase, TrmH family, group 3 [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 307

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 95/191 (49%), Gaps = 8/191 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           V  VP   +D +  +   HQG+  + A +    +D +       +    +++ D + D +
Sbjct: 111 VNQVPRSVLDNM-SQTGAHQGVIAQAAVIPYVDIDEILAVAAAKQEDPFIIIADEIQDSY 169

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILR+A +    G++  K    +  AV AK+++GA+ H+P  R++NL   +  +   
Sbjct: 170 NLGAILRTAESAGVHGVVFPKHRQVTLDAVTAKASAGAVNHVPCARVNNLVQTMNYLKGK 229

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    GL+ D +   + +     IAL++G EGKG+     +       + M G++ +LN 
Sbjct: 230 GVWIAGLNMDGESIFDNKKMTGPIALVVGNEGKGISRLVADNCDFTVSIPMQGVLNSLNA 289

Query: 266 SNAAAVALYIT 276
           + A  +A++ T
Sbjct: 290 AVATGIAVFET 300


>gi|302876553|ref|YP_003845186.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulovorans 743B]
 gi|307687225|ref|ZP_07629671.1| RNA methyltransferase [Clostridium cellulovorans 743B]
 gi|302579410|gb|ADL53422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulovorans 743B]
          Length = 309

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 27/270 (10%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----- 76
           ++RRN    +K + F      +       + G + V  AL + S  I Q+L  K      
Sbjct: 42  EVRRNEE--RKPKDFETVKFESQVVREDIIEGRNAVIEALKSSSTTIEQILVAKGDTTGS 99

Query: 77  -----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVR 130
                A AR            VK V  + +D++  +  VHQG +A+ T        D + 
Sbjct: 100 INVVLAEAR-------EKRLVVKEVDRKKLDEM-SQTGVHQGVIAIVTPYKYCEVEDILE 151

Query: 131 NSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            +Q       +++LD + DPHN+GAILR+A      G++  KR +   +  + K+++GA+
Sbjct: 152 YAQKKGEDPFIIILDEIEDPHNLGAILRTAEVCGVHGVVIPKRRNVGITPTVYKTSAGAV 211

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +++   ++ N+   +  +   G    G   D K   +        ALI+G+EG+G+   T
Sbjct: 212 QYMKVAKVPNINSVIDSLKKKGIWIYGADMDGKVYCQDANFRGAAALIIGSEGRGISKLT 271

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +E    +  + M G I +LN S A  + +Y
Sbjct: 272 KEKCDLLVKIPMVGQITSLNASVAGGILMY 301


>gi|221632708|ref|YP_002521929.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
           DSM 5159]
 gi|221156305|gb|ACM05432.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
           DSM 5159]
          Length = 261

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 102/193 (52%), Gaps = 15/193 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVN 142
            PV  +P   +D++VG    HQG+ LET+P        LL P  +++     +++LDH+ 
Sbjct: 56  IPVIVIPRSELDRMVGS-VNHQGVVLETSPYPYVDFATLLDPAPESI-----VLLLDHLQ 109

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP NI  +LR+A A    G++  +R +   +  +  +++GA+EH+    ++NL  A+  +
Sbjct: 110 DPQNIATLLRTAEAAGVRGVVLPERRAAGITPAVVNASAGAVEHLQITLVTNLARAVDTL 169

Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              G+  + L    + + L +      + L++GAEG GL P   + A     + M G I+
Sbjct: 170 REHGYWIVALEPGPNAQSLFRAPLPLPLVLLVGAEGHGLSPVLLKRADVQVIIPMLGQIE 229

Query: 262 ALNVSNAAAVALY 274
           +LN + A ++ALY
Sbjct: 230 SLNAAVAGSIALY 242


>gi|188995645|ref|YP_001929897.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595325|dbj|BAG34300.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 249

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 11/234 (4%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++G+H++S A        KIF     K           +    PV  VP + +D++  K
Sbjct: 6   MIFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTSK 65

Query: 108 EAVHQGL-----ALETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+     A+E   L  L P L     +  L++LD + D  N GAI R+A     D
Sbjct: 66  N--HQGVVAILSAIEYTRLDQLIPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S S      K+++GAL  IP  R++++  A++ +  +G + +  S  +    
Sbjct: 124 AIIIPERGSISVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLY 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   + +++GAE  G  P T   A  +  +   G I +LNVS AA + +Y
Sbjct: 184 TDVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIY 237


>gi|306821097|ref|ZP_07454713.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550790|gb|EFM38765.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 246

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 12/192 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ------LLMVLDHVN 142
           +K V  + +D +   E  HQG+A   +          LD ++ ++       +M+LD + 
Sbjct: 47  IKEVDRKKLDALAQGEN-HQGVAASASEYEYYDFEKLLDDIKVNKEQSKKNFVMILDKIE 105

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAI+RSA     D +I   R S +  + + K + GA  ++  IR++NL DA++K+
Sbjct: 106 DPHNLGAIIRSAHLSGVDAVIIPNRRSANVDSTVEKVSVGATSYMKIIRVTNLNDAIEKL 165

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G     L   +      ++  D IA+I+G EGKG+    ++ +  +  + M G I +
Sbjct: 166 KKAGLWIYCLDMGNDYYFNTDLTGD-IAVIVGNEGKGVSELIRKNSDFVISIPMLGKIDS 224

Query: 263 LNVSNAAAVALY 274
           LN S A+++ ++
Sbjct: 225 LNASVASSIVMF 236


>gi|329947308|ref|ZP_08294575.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328525525|gb|EGF52569.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 332

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 8/174 (4%)

Query: 109 AVHQGLALETAPLLSPT----LDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+A+E       T    LD  R+   + LL+ LD V DPHN+GA+LRSA AF  DG
Sbjct: 145 AAHQGVAIEVPAYEYTTARDLLDRARSLERTPLLVALDQVTDPHNLGAVLRSAGAFGADG 204

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R S   +A + K ++GA   +   R +NL  AL+++   G   +GL       +E
Sbjct: 205 VIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRALEQVKREGCFVVGLDGSGSTDIE 264

Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + +  + L+ GAEG GL    +ET   +A + +   +++LN + A  ++LY
Sbjct: 265 DLTLADSPLVLVTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLY 318


>gi|269837622|ref|YP_003319850.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786885|gb|ACZ39028.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 252

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 5/188 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNI 147
            PVK +P + + +++  +  HQG+ALET P      D +      + ++ LDH+ DP N+
Sbjct: 54  LPVKHLPQRDLAEML-PDVNHQGVALETGPYPYVGFDDLLRQAEGRPILALDHIQDPQNL 112

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
             ++R+A A    G++   R +   +  +  +++GA+EH+    ++NL  AL++    G+
Sbjct: 113 ATLMRTAEAVGVGGLLLPDRRAAGVTPAVVNASAGAVEHLRVALVANLGRALEECQEAGY 172

Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             + L +  + + L      +   L++G+EGKG+ P     A     L M G + +LN +
Sbjct: 173 WVVALEAGPEAQTLFTADLPEPTVLVVGSEGKGMAPTLLRRADVQVALPMQGRVDSLNAA 232

Query: 267 NAAAVALY 274
            A ++ALY
Sbjct: 233 VAGSIALY 240


>gi|330872261|gb|EGH06410.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 201

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 8/195 (4%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L ++P R     LA      R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L Q
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQ 186

Query: 223 EIKNDKIALILGAEG 237
           +       +I+GAEG
Sbjct: 187 QDLTGPTIIIMGAEG 201


>gi|119953304|ref|YP_945513.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
 gi|119862075|gb|AAX17843.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
          Length = 244

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 87/147 (59%), Gaps = 4/147 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +N+  +++LD + DP N GAILR++  F+ D +IT++R S  ++A   +++SGA +++  
Sbjct: 91  KNNVFILILDGIEDPQNFGAILRTSEQFNIDLVITSQRRSAKDNATTLRTSSGASQYVNK 150

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND-KIALILGAEGKGLRPKTQET 247
           + + N+ + ++ +   GF     +SD K      IK ND KIALI+G EGKG+    +E 
Sbjct: 151 LIVPNINNVIKDLKKNGFWI--YASDIKGKAINTIKINDTKIALIMGNEGKGIHKLIKEN 208

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  +   G I +LNVS +  + ++
Sbjct: 209 SDFLVKIPTTGKIDSLNVSVSTGILIF 235


>gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan
           troglodytes]
          Length = 353

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 63/310 (20%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP--ENL---------------FLYGVHT 56
           +++D+ + +L   H        F+  +RH  +P  E L                L+G+  
Sbjct: 6   TVRDATWGRLVTRH--------FSHAARHGERPGGEELSRLLLDDLVPTSRLELLFGMSP 57

Query: 57  VSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
              AL    R + +LL           +  L R+    ++P   P +    Q +D +  +
Sbjct: 58  CLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRR----QKLDTMC-R 112

Query: 108 EAVHQGLALETAPLL-SPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             VHQG+ +E +PL   P  +A   S      QL +VLD + DP N GA+LRSA     D
Sbjct: 113 YQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHFLGVD 172

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTIGLSSDSK 217
            +IT++R S   + V++KS++GA+E +      +LT  LQ     G+    T+G  S ++
Sbjct: 173 KVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPS-TE 231

Query: 218 KPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKALN 264
            P   EI               L+LG EG GL  + Q +     T +    +P  +++LN
Sbjct: 232 DPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLN 291

Query: 265 VSNAAAVALY 274
           VS AA + L+
Sbjct: 292 VSVAAGILLH 301


>gi|309777273|ref|ZP_07672235.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308914953|gb|EFP60731.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 237

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 8/190 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDP 144
            PVK +  + +D+++     HQG+A          L   L+A+   +  LL++LD + DP
Sbjct: 41  IPVKVLGRKKMDQLLNGN--HQGIAASIDDYKTWELEELLEAIPQGKQPLLVMLDGLEDP 98

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAILR+      DG+I  K  +   +  +AK ++GA++ +    ++NL  A++ +  
Sbjct: 99  HNLGAILRTCDCIGADGVIIGKHRNVRLTPTVAKVSTGAIDTVKVSVVTNLAQAIKYLKK 158

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G+  +G   ++ +   +   +  + L++G+EG G+    ++       L M G + +LN
Sbjct: 159 QGYWVVGTDFENSRDYREGQYDVPLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLN 218

Query: 265 VSNAAAVALY 274
            S AA + LY
Sbjct: 219 ASVAAGILLY 228


>gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus
           leucogenys]
          Length = 353

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 38/262 (14%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQT 100
            L+G+     AL    R + +LL           +  L R+    ++P   P +    Q 
Sbjct: 51  LLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRR----QK 106

Query: 101 IDKIVGKEAVHQGLALETAPLL-SPTLDAVRNS------QLLMVLDHVNDPHNIGAILRS 153
           +D +  +  VHQG+ +E +PL   P  +A   S      QL +VLD + DP N GA+LRS
Sbjct: 107 LDTMC-RYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTI 210
           A     D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+    T+
Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225

Query: 211 GLSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMP 257
           G  S ++ P   EI          +    L+LG EG GL  + Q +     T +    +P
Sbjct: 226 GCPS-AEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP 284

Query: 258 GIIKALNVSNAAAVALYITQNH 279
             +++LNVS AA + L+   N 
Sbjct: 285 PGLESLNVSVAAGILLHSICNQ 306


>gi|257784982|ref|YP_003180199.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
           20469]
 gi|257473489|gb|ACV51608.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
           20469]
          Length = 338

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 6/189 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPH 145
            PV+ V    +D +      HQG+ + T P     L      A   + L++VLDHV D  
Sbjct: 142 IPVERVARPVLDSLS-SHGAHQGVIVRTQPFAYADLSEIIQRAGSANALVVVLDHVTDEG 200

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI+RSA      G++     +        K+++GA+ H+P  ++SNL  AL+++ + 
Sbjct: 201 NFGAIVRSAEVVGAAGVVIANARAARVGVGAYKTSAGAVLHLPIAQVSNLPRALEELKAA 260

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF T G +  + + + +     ++AL++G+EG G+     E       L   G +++LNV
Sbjct: 261 GFWTCGSTEHATQSVWEAPMGGRLALVMGSEGSGISRLMLEKCDFTCKLPQFGQVESLNV 320

Query: 266 SNAAAVALY 274
           + A  V  Y
Sbjct: 321 AQATTVMCY 329


>gi|320533712|ref|ZP_08034329.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134073|gb|EFW26404.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 264

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 109 AVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+A+E       TA  L     A+  + LL+ LD V DPHN+GA+LRSA AF  DG
Sbjct: 83  AAHQGVAIEVPAYEYTTARDLLERARALGRTPLLVALDQVTDPHNLGAVLRSAGAFGADG 142

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R S   +A + K ++GA   +   R +NL  AL+++   G   +GL       +E
Sbjct: 143 VIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRALEQLKKEGCFVVGLDGSGSTAVE 202

Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + +  + L+ GAEG GL    +ET   +  + +   +++LN + A  ++LY
Sbjct: 203 DLTLADSPLVLVTGAEGAGLSRLVRETCDVLVSVPISRSVESLNAAVATGISLY 256


>gi|149371617|ref|ZP_01891033.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
 gi|149355244|gb|EDM43804.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
          Length = 248

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 22/221 (9%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +NNP  KI Q++A    L +L+          +  VP + + K+   +  HQG+   T+P
Sbjct: 33  INNP--KIEQIVAD---LEKLN--------VSISNVPEEKLYKLT--KGNHQGIVALTSP 77

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +    L+ V         + L ++LD ++D  N GAILR+A       +I  K+     S
Sbjct: 78  IEFHDLETVVEKTLETETTPLFLILDQISDVRNFGAILRTAECTGVHAVIVQKKGGAPVS 137

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               K+++GA+ +IP I++ ++ DA+  +   G  TI  +  S+K +  +     +A+++
Sbjct: 138 GDAVKTSAGAIFNIPIIKVDHIKDAIFYLQGSGVTTIAATEKSEKTIYDQTLTTPVAIVM 197

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+EG+G+     +     A L + G I +LNVS A    LY
Sbjct: 198 GSEGRGVSRSVLQLVDEKASLPVLGEINSLNVSVACGAVLY 238


>gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 248

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 11/237 (4%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           EN  ++G+H++  A+       KI+        L +  +     +  P + VP + ++  
Sbjct: 7   ENKMIFGLHSIIEAIEAGRDIEKIYLKRDFGGELVKTLFAKIKTYGIPCRKVPVEKLNSF 66

Query: 105 VGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             K   HQG     A +       + PTL     + L++ LD V D  N GAI R+    
Sbjct: 67  TEKN--HQGAVAFVAEISYSNISDIIPTLYEAGKTPLIVALDGVTDIRNFGAISRTCECA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D I+     S + +A   K+++GAL ++P  R  NL  A++ + + GF  I LS  + 
Sbjct: 125 GVDAILLPSYCSATINADAVKTSAGALHYLPVCRTDNLCQAIKFLKNSGFTIIALSEKAN 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  +    L+LGAE +G+  +      S   + + G I++LNVS AA + +Y
Sbjct: 185 IAYTDQDYSSPTVLVLGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGIVIY 241


>gi|297836270|ref|XP_002886017.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331857|gb|EFH62276.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 577

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 55/299 (18%)

Query: 27  HRDYKKMQSFN----QKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           +R++ + +S+     Q++  +S P  E   +YGV  V AAL+   R+ + L   +     
Sbjct: 274 YRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPVLAALSVGRREFYALYVQEG---- 329

Query: 81  LDWDAN---------------LPHPFPVKTVPPQTID-KIVGKEAVHQGLALETAPL--- 121
           LD  +N               +     +        D  +V     HQGL L+ +PL   
Sbjct: 330 LDLSSNNRKKKDKKGFEKVLKISEKLGLNLKETSKHDLNMVADNRPHQGLVLDASPLELV 389

Query: 122 ----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               L P       S L + LD V DP N+GAI+RSA  F   G++   + S   SAV++
Sbjct: 390 KVKELDPISSEEEKSSLWVALDEVTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVVS 449

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAE 236
           K+++G+LE +      N+   L+     G++ +G S   K   L + +      L+LG E
Sbjct: 450 KASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGNE 509

Query: 237 GKGLRPKTQETATSMAHL--HMPG-------------------IIKALNVSNAAAVALY 274
           G GLRP  + + T +  +  +MP                     +++LNVS AA + L+
Sbjct: 510 GTGLRPLVERSCTELVRISGNMPNDVSVTESDDAEGEGFRSFLAVESLNVSVAAGLFLH 568


>gi|303257674|ref|ZP_07343686.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
           bacterium 1_1_47]
 gi|331000773|ref|ZP_08324422.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859644|gb|EFL82723.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
           bacterium 1_1_47]
 gi|329570505|gb|EGG52230.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
           excrementihominis YIT 11859]
          Length = 247

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 5/174 (2%)

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E  HQGL    AP+         +D +  + LL++LD V DP N GA LR A A     +
Sbjct: 67  EVPHQGLIALAAPIDIGMSFDTLMDNLAGNPLLLLLDGVTDPRNFGACLRVADAAGVSAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           IT K  S + +A   K+++GA E +P +R++NL  ++ ++   G   IG + +++K + +
Sbjct: 127 ITPKDRSATLTAAAVKASAGASETVPIVRVTNLAGSIVELVDAGVPIIGTAGEAQKTIYE 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +      +LGAEG GLR  T+   + +A + M G +++LNVS AA + L+ T
Sbjct: 187 FDQKGAFGWVLGAEGDGLRQLTRRRCSDLAKIPMLGTVESLNVSVAAGICLFET 240


>gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           smegmatis str. MC2 155]
 gi|254806534|sp|A0R557|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           MSMEG_6073
 gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           smegmatis str. MC2 155]
          Length = 314

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 8/185 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           VP   +D++     +HQGL L+  P        L  T  A     LL+ LD+++DP N+G
Sbjct: 122 VPRTDLDRM-SNHGLHQGLGLQVPPYAYAHPDDLLATARADAAPALLVALDNISDPRNLG 180

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RS  AF+  G++  +R S S +AV  ++++GA   +P  R +NL   L+     G Q
Sbjct: 181 AIVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQ 240

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +     L++        +++G+EGKGL    +E   ++  + M G  ++LN S A
Sbjct: 241 IVGLDAGGDTTLDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGPTESLNASVA 300

Query: 269 AAVAL 273
           A V L
Sbjct: 301 AGVVL 305


>gi|323435932|ref|ZP_01049071.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|321496247|gb|EAQ40305.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 164

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 3/150 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A  N ++++V DHV+ P N+G+I R A AF    II         S+ L K+A      +
Sbjct: 11  ASHNKEIIIVCDHVSGPANVGSIFRLADAFGVQEIIFCGNAPDVTSSRLRKTARNTERTV 70

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PL-EQEIKN-DKIALILGAEGKGLRPKT 244
            +    N++  L  +   GF TI L  DS   P+ E  I N  KI+L++GAE  G+ P+ 
Sbjct: 71  RFRESENISTTLINLREQGFSTIALEIDSTSLPIAEVHIANMSKISLVIGAESTGVTPEA 130

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E    +AH+ M GI  ++NV+ AA +ALY
Sbjct: 131 LEQCAVIAHIPMHGINSSMNVAQAAGIALY 160


>gi|189460114|ref|ZP_03008899.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
 gi|189433156|gb|EDV02141.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
          Length = 250

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103
           +N  ++GV  V  A+    ++I ++L  K+  + L  +  A L   F PV+ VP + I++
Sbjct: 4   KNEMIFGVRAVIEAIQ-AGKEIDKVLVKKDIQSDLSKELFAVLKETFIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    +P+       + P L     + LL++LD + D  N GAI R+   
Sbjct: 63  ITKKN--HQGVVAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGLTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  IP  R +NLT+ ++ +   GF+ +  +   
Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +    D   +I+GAE  G+  +          + + G I++LNVS AA + +Y
Sbjct: 181 DYDYTKATYTDPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIY 238


>gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 239

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 13/234 (5%)

Query: 50  FLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++YG + +  AL N    KI+     K ++ ++ +         +     + +  +VG E
Sbjct: 3   YIYGRNAIIEALKNKKVDKIYAAPGLKGSIGKI-YAMAKEQKIVIVEADKKKLKDMVG-E 60

Query: 109 AVHQGL-ALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             HQG+ AL ++   S   D +        N +L+M LD + DP+N GAI RSA AF   
Sbjct: 61  VNHQGVVALSSSFEYSQVEDIIAYAKSRGENIKLIM-LDEIEDPYNFGAIARSAEAFGFH 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR S   +  + KS++GA+E I    ++NL+  + ++        G + +     
Sbjct: 120 GIIIPKRRSALVNDAVYKSSAGAIESIKVAVVNNLSQTISELKENSIWVYGATMEGDPIC 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +Q++  + I +++G EGKGL    ++    +  + M G I +LN S A  + LY
Sbjct: 180 DQDLVGN-ICIVIGNEGKGLGHAVEKNCDELISIPMLGSINSLNASVACGIILY 232


>gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 248

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 16/242 (6%)

Query: 44  SQPENLFLYGVHTV--SAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQ 99
           S+ + +++YGV+ V  S  +++  ++I+    +KN +++L     L       VK V   
Sbjct: 3   SKDKLMYIYGVNPVLESFKISDALKEIY---ISKNRISKLKEILRLAEEKSISVKIVEET 59

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNS------QLLMVLDHVNDPHNIGAILR 152
            I+KI   + VHQG+  +  P  + TLD A++ S         ++LD V DP N G+I R
Sbjct: 60  FIEKIT--QGVHQGVVAKIKPKKTITLDEALKISFKKNEPAFFLILDLVEDPQNFGSICR 117

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
            A A     II  K+ S      + K+++GA+ H+  + I+N+  A++ +        G 
Sbjct: 118 IADAAGVHAIIYQKKRSVGIVPSVWKASAGAVWHVNLVEINNIKYAIKTLKEHNITIYGA 177

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            + +K    +      + LI+G+EGKG+R         +  + M G I +LNVS A+A+ 
Sbjct: 178 EAQAKDVFWESDFTQPLGLIVGSEGKGIRQTVIALCDKVIKIPMRGTINSLNVSVASALI 237

Query: 273 LY 274
            +
Sbjct: 238 TF 239


>gi|78044128|ref|YP_361140.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996243|gb|ABB15142.1| RNA methyltransferase, TrmH family, group 3 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 237

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 28/238 (11%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPPQTID 102
           +YGV+ V  AL        + +  K  L+R   D N+         +  PV  VP + + 
Sbjct: 4   IYGVNPVREAL-------MKGIVNKLYLSRETKDKNIRELLLLARENKVPVVEVPREKL- 55

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQ--LLMVLDHVNDPHNIGAILRSAV 155
                 A  QG+  + +P+    +D     A R ++   ++VL+H+ DP N+GAILRSA 
Sbjct: 56  -----HAKSQGVEADISPVKYVEIDDILAIAERKAEPLFILVLNHLEDPQNLGAILRSAE 110

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF   G+I  KR +   +  +AK+++GA   +P  R +N+ + L+ +   G   +G  + 
Sbjct: 111 AFGVHGVIIPKRRAVQVTGAVAKASAGAYLKVPVARCTNVAETLRYLKEKGAWVVGADAK 170

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           SK  L        +AL++G E  GL             + M G I +LN S AAA+ +
Sbjct: 171 SKASLWDTDFKLPLALVIGGENVGLTSHILRECDFTVSIPMVGTINSLNASVAAALLM 228


>gi|297559549|ref|YP_003678523.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843997|gb|ADH66017.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 272

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 119/257 (46%), Gaps = 18/257 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYG----VHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           DY +++  N + RH      LF+      +   +AA   P       L T+     LD D
Sbjct: 16  DYTRLRDVNLR-RHLEAEHGLFMAEGDKVIRRAAAAGFEPR----SFLLTERRAEALD-D 69

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                  P+  V   T +K+VG + +H+G LA      L P  D +  ++ ++VL+ + D
Sbjct: 70  VVAASSAPLYVVGEDTAEKLVGFD-LHRGALAAFHRRALPPLDDVLAGARTIVVLEDLVD 128

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GAI RSA     D I+   R +        K + GA+  +P+ R+ +    L  + 
Sbjct: 129 HTNVGAIFRSAAGLGVDAIVLAPRCADPLYRRAVKVSMGAVFTLPHTRLDDWYGGLDTLR 188

Query: 204 SWGFQTIGLS-SDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           + GF  + L+  +   PL   +      D++ L+LG EG GL  +  E AT+  H+ M  
Sbjct: 189 AAGFHLMALTPGEGSLPLRDAMAALAPGDRVGLLLGTEGDGLSSRWLERATARVHIPMAD 248

Query: 259 -IIKALNVSNAAAVALY 274
             + +LNV+ AAA+A Y
Sbjct: 249 RDVDSLNVTAAAAIACY 265


>gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-23m63]
          Length = 245

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 4/156 (2%)

Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L   +D V+N       ++LD + DPHN+G+I+R+A A    G+I  KR S   + V+AK
Sbjct: 80  LDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAK 139

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+E++P  +++N+ + ++++   G        D +   +Q +    + +++G+EG 
Sbjct: 140 ASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGF 198

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+    ++    +  + M G + +LN S A  + LY
Sbjct: 199 GISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLY 234


>gi|189346156|ref|YP_001942685.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
           DSM 245]
 gi|189340303|gb|ACD89706.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
           DSM 245]
          Length = 248

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 6/181 (3%)

Query: 99  QTIDKIVGKEAVHQGLA--LETAPLLS--PTLDAVRNSQ-LLMVLDHVNDPHNIGAILRS 153
           + +++I G  A HQG+   + T    S    LD  RNS  LL++L  + DPHNIGAI+R+
Sbjct: 61  EKLNQIAGT-AKHQGICALISTVTFYSIDDILDHPRNSAPLLVILQGLEDPHNIGAIIRT 119

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A + D ++  +      +A + K+++GAL H+   ++ +L   ++ +H  GF+     
Sbjct: 120 AEAAAADAVVLIEGRGAPVNAAVHKASAGALSHMRICKVKSLVRIMEYLHERGFRVYAAD 179

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D++            AL+LGAEG GL P+  +   S   + + G I++LNVS  A + L
Sbjct: 180 MDAELNYTDADLKGPTALVLGAEGSGLSPEAMKFCGSSVRIPIAGCIESLNVSVTAGILL 239

Query: 274 Y 274
           Y
Sbjct: 240 Y 240


>gi|210608927|ref|ZP_03288064.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
 gi|210152844|gb|EEA83850.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
          Length = 250

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 15/239 (6%)

Query: 47  ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           ENL + G + V  A  +  P  K+F L   ++   R        H   +  V  + +D+I
Sbjct: 8   ENLMVEGRNAVIEAFRSGKPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVTKERLDQI 67

Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG +A   A   S   D +  ++       L++LD++ DPHN+GAI+R+A   
Sbjct: 68  -SETKKHQGVIAYAAAYEYSEVEDMLELAKKKGEDPFLILLDNIEDPHNLGAIIRTANLA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG--FQTIGLSSD 215
              G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G  F    +  +
Sbjct: 127 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLWFVCADMGGE 186

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S   L        I +++G EG G+    +E    +A + M G I +LN S AA V  Y
Sbjct: 187 SMYRLNL---TGPIGMVIGNEGDGVSRLVKEKCDFIASIPMKGDIDSLNASVAAGVLAY 242


>gi|302385702|ref|YP_003821524.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           saccharolyticum WM1]
 gi|302196330|gb|ADL03901.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           saccharolyticum WM1]
          Length = 246

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 79/141 (56%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L +LD + DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 98  FLFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 157

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NLT  ++++   G   +      +     ++K   I L++G+EG G+    +ET   +A 
Sbjct: 158 NLTATMEELKKRGMWFVCADMGGEVMYRLDLKG-PIGLVIGSEGNGVGKLVRETCDMVAS 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 217 IPMKGNIDSLNASVAAGVLAY 237


>gi|125527657|gb|EAY75771.1| hypothetical protein OsI_03687 [Oryza sativa Indica Group]
          Length = 517

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 88/160 (55%), Gaps = 10/160 (6%)

Query: 111 HQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+ +PL    +  L+ VR     + + + LD V DP N+GAI+RSA  F  +G++
Sbjct: 297 HQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVV 356

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222
              + S   S V++K+++G+LE I  +   N+   L      G++ +G +  SK  PL +
Sbjct: 357 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVASKAIPLSE 416

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +  +   L+LG+EG GLRP  + + T +  + +PG +  
Sbjct: 417 VVPGEPTILVLGSEGTGLRPLVERSCTHL--VRIPGNVDG 454


>gi|291515114|emb|CBK64324.1| rRNA methylase, putative, group 3 [Alistipes shahii WAL 8301]
          Length = 246

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 12/234 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVG 106
            ++G+  V+ A+    ++I +L   K A  +L     D  + H    + VP + ++++  
Sbjct: 5   LIFGIRPVAEAIE-AGKQIEKLYIRKGAEGQLMQELKDLCMRHRLHYQEVPVEKLNRLT- 62

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  +TA +    L+  L+ V   +  L+++ D V D  N GAI RSA      
Sbjct: 63  -RGNHQGVVAQTAAIEYVQLTDILERVPEDETPLVVLFDGVTDVRNFGAIARSAECAGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+IT  + S   +A   +S++GAL  IP  R+ ++ + L+ + + GFQ +  +  S+K L
Sbjct: 122 GLITPLKNSAPVNAEAIRSSAGALTTIPVCRVGSVRNTLKALQAEGFQVVAATEKSRKLL 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     +++GAE  G+  +  +       + + G I++LNVS AAAV L+
Sbjct: 182 YDADFRRPTVIVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLF 235


>gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07]
 gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07]
          Length = 248

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 86/156 (55%), Gaps = 4/156 (2%)

Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L   +D V+N       ++LD + DPHN+G+I+R+A A    G+I  KR S   + V+AK
Sbjct: 83  LDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAK 142

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+E++P  +++N+ + ++++   G        D +   +Q +    + +++G+EG 
Sbjct: 143 ASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGETFYKQNLTG-PLGVVIGSEGF 201

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+    ++    +  + M G + +LN S A  + LY
Sbjct: 202 GISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLY 237


>gi|225377343|ref|ZP_03754564.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
           16841]
 gi|225210874|gb|EEG93228.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
           16841]
          Length = 246

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            + +LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GA+ + P  +++
Sbjct: 99  FIFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NLT A++++   G   +       +  + ++K   I L++G EG+G+    +E    +A 
Sbjct: 159 NLTAAIKELKEKGLWFVCADMGGTEMYKLDLKG-PIGLVIGNEGEGVSKLVKENCDFIAS 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238


>gi|326773068|ref|ZP_08232352.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
           C505]
 gi|326637700|gb|EGE38602.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
           C505]
          Length = 332

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 8/174 (4%)

Query: 109 AVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+A+E       TA  L     A+ ++ LL+ LD V DPHN+GA+LRSA AF  DG
Sbjct: 145 ATHQGVAIEVPAYEYTTARDLLERAHALGHTPLLVALDQVTDPHNLGAVLRSAGAFGADG 204

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R S   +A + K ++GA   +   R +NL   L+++   G   +GL       +E
Sbjct: 205 VIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRTLEQLKKEGCFVVGLDGSGSTAVE 264

Query: 222 Q-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + +  + L+ GAEG GL    +ET   +A + +   +++LN + A  ++LY
Sbjct: 265 DLTLADSPLVLVTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLY 318


>gi|313158993|gb|EFR58370.1| RNA methyltransferase, TrmH family, group 3 [Alistipes sp. HGB5]
          Length = 243

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 117/234 (50%), Gaps = 12/234 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+  V+ A+    ++I +L   K A  +L     D    H   V+ VP + ++++  
Sbjct: 4   IIFGIRPVAEAIE-AGKQIEKLYIRKGAEGQLMSELRDLCFRHKVRVQEVPVEKLNRLT- 61

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  + + +    L+  L+ V   +  L+++ D V D  N GAI RSA      
Sbjct: 62  -RGNHQGVVAQISAIEYVGLADILERVPEDETPLVVIFDGVTDVRNFGAIARSAECAGAH 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+IT  + S   +A   +S++GAL  IP  R+ ++ + ++ + + GFQ +  +  S+K L
Sbjct: 121 GLITPLKNSAPVNAEAIRSSAGALTAIPVCRVGSIRNTVKLLQTEGFQIVAATEKSRKLL 180

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    AL++GAE  G+  +  +       + + G I++LNVS AAAV L+
Sbjct: 181 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLF 234


>gi|225017124|ref|ZP_03706316.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
           DSM 5476]
 gi|224950043|gb|EEG31252.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
           DSM 5476]
          Length = 258

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           VK    + +D + G  A HQG+A         T++ +  S         +++ D + DPH
Sbjct: 57  VKDADSRKLDAMSGG-ASHQGVAAIPCAASYATVEEILASAEQKGEAPFVIIADEIEDPH 115

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++R+A      GI+  KR S S + +++K+++GA+ ++P  R+SNL   + ++   
Sbjct: 116 NLGALIRTAECAGAHGILIPKRRSASLTPIVSKTSAGAVSYLPVARVSNLALEIDRLKER 175

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G   D +     +     +AL++G+EG+GL    +     +  L M G + +LN 
Sbjct: 176 GIWVYGADMDGENWCATDFSGG-VALVVGSEGRGLGKLVRSKCDVIVSLPMRGQVNSLNA 234

Query: 266 SNAAAVALY 274
           S A  + +Y
Sbjct: 235 SVAGGILMY 243


>gi|118100342|ref|XP_001235387.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 317

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 121/254 (47%), Gaps = 32/254 (12%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKI 104
            L+GV   S AL+   R +F+L   ++   +    +           PV  V  + +D +
Sbjct: 56  ILFGVAPCSMALSQARRDLFRLFLKRSGGPQRLVTSEFVLQAAARGVPVLHVGRRELDTL 115

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR----------NSQLL-MVLDHVNDPHNIGAILRS 153
            G   VHQG+ LE  PL    L+             N QLL + L+ + DP N+GA+LRS
Sbjct: 116 CGGR-VHQGVCLEATPLRFKRLEEAEEPGLGDGESPNRQLLWLALEQIQDPMNLGALLRS 174

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     D ++T++R S   +  ++K++SGA+E        +L   L+   + G++ +G  
Sbjct: 175 AYFLGVDRVVTSQRNSCPLTPTVSKASSGAMEVFDVYSTDDLRSFLKAKAAEGWEVVGTV 234

Query: 214 SDSKK----PLEQEIK---NDKIALILGAEGKGLRPKTQETATSM------AHLHMPGII 260
           S S+     P+   ++   N  I L++G+EG GL  +TQ     M        LH PG I
Sbjct: 235 SQSETVENVPVISCLEFRWNKPIILVIGSEGDGLSLETQLLCHQMLVIPSGRALH-PG-I 292

Query: 261 KALNVSNAAAVALY 274
           ++LNVS A  + L+
Sbjct: 293 ESLNVSVATGILLH 306


>gi|291550111|emb|CBL26373.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
          Length = 254

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    A     T+D +         +  L++LD++ DPHN+GAI+R+A      G+I
Sbjct: 75  HQGVIAHAAAYEYSTIDDMLKLAEERGEAPFLILLDNIEDPHNLGAIIRTANLAGAHGVI 134

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +A +AK+++GAL + P  +++NL   ++++   G   +    D ++  +  
Sbjct: 135 IPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCADMDGEQMYDLN 194

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    I L++G EG+G+    +E    +A + M G I +LN S AA V  Y
Sbjct: 195 LTG-PIGLVIGNEGEGVGRLVKENCDFVAGIPMKGQINSLNASVAAGVLAY 244


>gi|153814446|ref|ZP_01967114.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
 gi|317500160|ref|ZP_07958393.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087613|ref|ZP_08336541.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848842|gb|EDK25760.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
 gi|316898449|gb|EFV20487.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330399792|gb|EGG79452.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 258

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 22/212 (10%)

Query: 92  PVKTVPPQ-----TIDKIVGKEAV--------HQGLALETAPLLSPTLD-----AVRNSQ 133
           PV+T+  +     TI   VGKE +        HQG+    A      +D     A +  +
Sbjct: 48  PVRTIVREAKKHGTILNFVGKERLSQLTQTGRHQGVIAYAAAYDYAEIDDMLKLAEKRGE 107

Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              L+VLD + DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +
Sbjct: 108 DPFLIVLDGIEDPHNLGAIIRTANIAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAK 167

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL   ++++   G   +    D +   +  +    I L++G EG G+    +E    +
Sbjct: 168 VTNLVKTMEELKEKGIWFVCADMDGQSMYDMNLTG-PIGLVVGNEGDGVSRLVKENCDFV 226

Query: 252 AHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
           A + M G I +LN S A  V  Y I +   AK
Sbjct: 227 ASIPMKGEITSLNASVAGGVLAYEIVRQRLAK 258


>gi|154502841|ref|ZP_02039901.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
 gi|153796724|gb|EDN79144.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
          Length = 255

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 21/203 (10%)

Query: 92  PVKTVPPQ-----TIDKIVGKEAV--------HQG-LALETAPLLSPTLDAVRNSQ---- 133
           PV+T+  +     TI   VGKE +        HQG +A   A   S   D ++ ++    
Sbjct: 46  PVRTIVREAKKHDTIINFVGKERLSQISVTGKHQGVIAYAAAYEYSEVEDMLKLAEERGE 105

Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              L++LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +
Sbjct: 106 DPFLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAK 165

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL   ++++   G   +      +      +K   I L++G EG+G+    +E    +
Sbjct: 166 VTNLAKTMEELKEKGLWFVCADMGGESMYRLNLKG-PIGLVIGNEGEGVGRLVKEKCDFV 224

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           A + M G I +LN S AA V  Y
Sbjct: 225 ASIPMKGEIDSLNASVAAGVLAY 247


>gi|225445088|ref|XP_002280407.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 595

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 10/158 (6%)

Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+ +PL       L P L       L + LD V DP N+GAI+RSA  F   G++
Sbjct: 372 HQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGAIIRSAYFFGVSGVV 431

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222
              + S   S V++K+++G+LE +      N+   L      G+Q +G S   +  PL +
Sbjct: 432 LCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQVLGGSVSPRAIPLNE 491

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                   L+LG+EG GLRP  + + T +  + +PG I
Sbjct: 492 ISPGAPTILVLGSEGTGLRPLVERSCTQL--IRIPGNI 527


>gi|331698924|ref|YP_004335163.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953613|gb|AEA27310.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 256

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 7/188 (3%)

Query: 93  VKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146
           V+T     +  + G     QG LA   AP ++P  + V     R    ++VLD V +P N
Sbjct: 63  VETASAHRVKVLAGNGRHDQGVLADVVAPRMAPVEEFVSDLGTRRGASVLVLDAVTNPAN 122

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ILRSA A   DG++  +R  P+   ++ K+++G     P +R +        + + G
Sbjct: 123 VGMILRSATAAGLDGVLLPRRGVPAIDPLVIKASAGVAFSAPVLRSATAAQGCAVLRAAG 182

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   GL++     LE E+  +++AL+LG E +GL    +E       + M G +++LNV+
Sbjct: 183 FAVHGLAAGGDSLLEAELP-ERVALVLGNESEGLSADVREELDGTLAIPMFGGVESLNVA 241

Query: 267 NAAAVALY 274
           +A AVA Y
Sbjct: 242 SAGAVAAY 249


>gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 250

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 98/185 (52%), Gaps = 8/185 (4%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQL--LMVLDHVNDPHNIGAIL 151
           + +D++V ++  HQG+A +  P+   + +     A R  ++   ++LD + D HN+GAI+
Sbjct: 57  KALDRLVPQQR-HQGVAAQAQPIAMTSWETCAATAARRGEVPFFVLLDGIEDVHNMGAII 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A       ++  KR+S   +  + K+++GA+E++P + I N T  L+ +   GF  IG
Sbjct: 116 RTAECAGAHAVLIPKRHSAPINETVGKTSAGAVEYMPLVSIGNTTQVLKALKKAGFWIIG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              + +           + L++G EGKG+    +E    +  + M G + +LN S AAA+
Sbjct: 176 ADMNGEADYFHTDMTMPLVLVIGNEGKGISRLVKENCDILVQIPMFGHVNSLNASVAAAL 235

Query: 272 ALYIT 276
            +Y T
Sbjct: 236 LIYET 240


>gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis
           carolinensis]
          Length = 382

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 121/257 (47%), Gaps = 40/257 (15%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL------ATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            L+G+   S AL    R   +L        T  A +R   D  +P    V+TVP + +D+
Sbjct: 124 MLFGIAPCSLALATSKRSFSRLFLKAGVTPTTEAFSRQAEDRKIP----VQTVPRKVLDR 179

Query: 104 IVGKEAVHQGLALETAPLLSPT---------LDAVRNSQ----LLMVLDHVNDPHNIGAI 150
           +     VHQG+ LE  PL  PT         L+     +    L + L+ + DP N+GA+
Sbjct: 180 L-SHGGVHQGVCLEATPL-HPTGWTQAPAHRLEGATTEEAPQLLWLALEGIQDPMNLGAV 237

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA     DGI+ +++ S   + V++K++SGA+E +      +L   L+     G++ +
Sbjct: 238 LRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLDVFSADDLPGFLKVKSKEGWEVL 297

Query: 211 GLSSDSK--------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MP 257
           G  + +K          L+       I L+LG EG GL P+T+     M  +       P
Sbjct: 298 GTVAHAKAQDGIPVVSCLDFRWMKPTI-LVLGNEGHGLSPETKSLCRRMLTIAPGRELEP 356

Query: 258 GIIKALNVSNAAAVALY 274
           G I++LNVS AA + L+
Sbjct: 357 G-IESLNVSVAAGILLH 372


>gi|218295896|ref|ZP_03496676.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
           Y51MC23]
 gi|218243634|gb|EED10162.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
           Y51MC23]
          Length = 238

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 10/187 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIG 148
           VP   +D ++ K   HQG+A L   P  +   +A   +Q      LL+ LD + DP N G
Sbjct: 45  VPRIELDTLL-KTTHHQGIAALVEEPRYASLEEAFLLAQKRGEPPLLVALDGITDPRNYG 103

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RSA+A    G+++ +R +   S +  K+++GA   +P IR+ NL  AL+++   G  
Sbjct: 104 AMIRSALALGAHGVLSEERRAAPLSPLALKASAGAALKLPVIRVKNLPRALKELKERGVW 163

Query: 209 TIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             GL     K P E + K   +AL++G+EG+G+R   +E+   +  + +    ++LN S 
Sbjct: 164 VYGLDLKGEKAPRELDFKRP-LALVVGSEGEGMRRLVRESCDELFRIPIRPEAESLNASV 222

Query: 268 AAAVALY 274
           A ++ALY
Sbjct: 223 ALSIALY 229


>gi|154497125|ref|ZP_02035821.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
           29799]
 gi|150273524|gb|EDN00652.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
           29799]
          Length = 258

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 26/243 (10%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPH- 89
           M+    + R      +  + G + V  AL    P  KIF        LAR + DA L H 
Sbjct: 1   MREQKDRRREPEAEADGMIEGRNAVIEALRAGTPIDKIF--------LARGETDATLGHI 52

Query: 90  -------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LL 135
                     V     + +D +    A HQG+    A     T+D + N+        L+
Sbjct: 53  ASSAREKGIVVVEADRRKLDGMSRTHA-HQGVIAMAAVREYATVDDILNAAREKGEPPLI 111

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V D ++DPHN+GA++R+A      G+I  KR S   +AV+AK+++GA+ ++P  R+ NL
Sbjct: 112 VVCDELSDPHNLGAVIRTAECAGAHGVIIPKRRSAGLTAVVAKTSAGAVSYVPVARVPNL 171

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T  L+++   G    G ++D    L         A+++G+EG G+     E       + 
Sbjct: 172 TALLKELKDEGLWIFGTAADGNTTLYDADLKGPAAIVIGSEGDGMGRLVSEQCDFKVSIP 231

Query: 256 MPG 258
           M G
Sbjct: 232 MKG 234


>gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 255

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 81/148 (54%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D ++NS L ++L+++ DP N+G I+RSA AF    +  +K  +   S    ++  G++ H
Sbjct: 98  DIIKNSGLFILLENIQDPGNLGTIIRSADAFGAKAVFVSKGSADIYSDKTIRATMGSIFH 157

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P I   N+ + L  M +        S   +K L      +K A ++G E  GLR +T+ 
Sbjct: 158 LPIIDSINIKNTLNLMKNKKISVFAASLKGEKYLNDIKFPNKSAFVIGNEANGLRSETEN 217

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
           +A ++  ++MPG  ++LN + AA++ +Y
Sbjct: 218 SADTLVKIYMPGNTESLNAATAASIIMY 245


>gi|301168477|emb|CBW28067.1| SpoU rRNA Methylase family protein [Bacteriovorax marinus SJ]
          Length = 252

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 24/245 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPVKTVPPQTIDK 103
            + G+H+++ A+ N    + +++AT   L       RLD +      F VK V P  + K
Sbjct: 6   LIVGIHSIAEAITNRPSAVRKIIATAEGLKEFRKKTRLDKEIK---QFDVKIVSPHDVQK 62

Query: 104 IVGKEAVHQGLALETAP-LLSPTLDAVRNSQL--------------LMVLDHVNDPHNIG 148
           +  +      L+ +  P  +   +D V    L              ++ LD V D HN  
Sbjct: 63  MAEQFYKELELSFQRVPSQIFMVVDPVETYDLAWLYDQIDKSPRYKILCLDQVTDVHNAA 122

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R+A  +  D ++T  +         A+ ASGA+EH+  +  S+L  A+ K+      
Sbjct: 123 AIMRTAAFYGVDCVVTGAKGHFGTGPSFARIASGAIEHVNIVICSSLPKAITKLIEKNVS 182

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            IG S  +K+  +    +  +AL+LGAE  G+             +   G IK+LNVS A
Sbjct: 183 VIGFSEHAKEDGDGVDISGHVALVLGAEDVGMSNAVSRVVEHRVAIKPLGKIKSLNVSVA 242

Query: 269 AAVAL 273
           AA+A+
Sbjct: 243 AAIAM 247


>gi|332293439|ref|YP_004432048.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171525|gb|AEE20780.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 165

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 5/151 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +  N ++++V +H+  P N G+I R A AF    II       + S+ L K+A    + I
Sbjct: 11  STHNKEIILVCEHMTSPANAGSIFRLADAFGVKEIIFCGNQPDTRSSRLRKTARNTEKTI 70

Query: 188 PYIRISN-LTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPK 243
           P+ R+S+ + + LQ++H   F +I L  + + KP+      + DK+ALI+GAE  G+  +
Sbjct: 71  PF-RVSDTIKNTLQELHDLSFTSIALEITSNSKPMSTVDFSRLDKVALIIGAENIGITDE 129

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           T E   ++AH+ M GI  ++NV+ A  +ALY
Sbjct: 130 TLEQCNNIAHITMYGINSSMNVAQATGIALY 160


>gi|281206723|gb|EFA80908.1| hypothetical protein PPL_06143 [Polysphondylium pallidum PN500]
          Length = 520

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 26/192 (13%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----------DAVRNSQLLMVLDHVNDP 144
           V  Q +D +  K  VHQGL L+ +PL   TL           +A     L++ LD + DP
Sbjct: 316 VDKQRLD-VFSKFRVHQGLVLDCSPLTITTLTGLSVPDMTEFEADNRYPLIIALDELWDP 374

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N GAI+R+   F  DG+I T + S   S   +KS+SGA+E  P  +  +L   LQ   +
Sbjct: 375 QNTGAIVRTCHYFGLDGVIVTDKGSIPVSPFASKSSSGAIEEFPIFKCLSLASFLQASKA 434

Query: 205 WGFQTIGLS-SDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            G+  IG S SD   P  ++I N KI     L++G EG GL+ K       ++H +   +
Sbjct: 435 RGWHIIGTSVSD---PESKDITNVKIDKPTVLVIGNEGYGLKDKV------VSHCNEMIM 485

Query: 260 IKALNVSNAAAV 271
           IK L  S+   +
Sbjct: 486 IKGLQRSSNEKI 497


>gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
           12042]
 gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
           12042]
          Length = 244

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 77/139 (55%), Gaps = 2/139 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP N+G I+R+AVAF  D ++ +   +   +    +S  GAL HI   R + L
Sbjct: 102 VVLDGVQDPGNVGTIIRTAVAFGFDQVLLSPDCADVYNEKCVRSTQGALFHIAISR-TEL 160

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             AL ++   G   IG +    +PL +   ++ IA++LG EG+G+RP T +     A + 
Sbjct: 161 IPALNELKELGVTVIGTALQGAQPLSELPVSENIAVVLGNEGQGIRPATLDICDQRALIE 220

Query: 256 MPGIIKALNVSNAAAVALY 274
           M    ++LNV+ AA + LY
Sbjct: 221 MSS-FESLNVAVAAGICLY 238


>gi|169824090|ref|YP_001691701.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302381082|ref|ZP_07269542.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           ACS-171-V-Col3]
 gi|303235343|ref|ZP_07321961.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           BVS033A4]
 gi|167830895|dbj|BAG07811.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302311129|gb|EFK93150.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493657|gb|EFL53445.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           BVS033A4]
          Length = 244

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145
           V+ V  + I+K     A HQG+  +        +D +      RN    L++LD + DPH
Sbjct: 48  VEYVDKKYIEKFAENTA-HQGVMAKMPSFGYSNVDEMIIYAKKRNEDPFLIILDEITDPH 106

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A    C G+I  K  +   +A   K+++GA+ +I   R++N+T  +  +   
Sbjct: 107 NLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEH 166

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                G   ++ +   Q      I L++G EGKG+    +E    +  + M G  ++LN 
Sbjct: 167 NIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNA 226

Query: 266 SNAAAVALY 274
           SNAA++ +Y
Sbjct: 227 SNAASILIY 235


>gi|313900465|ref|ZP_07833958.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
 gi|312954527|gb|EFR36202.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
          Length = 240

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 8/190 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDP 144
            PVK +  + +D+++     HQG+A          L   L++V   +  LL++LD + DP
Sbjct: 44  IPVKVLGRKKMDQLLNGN--HQGIAACIDDYKTWELEELLESVPQGKQPLLVMLDGLEDP 101

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAILR+      DG+I  K  +   +  +AK ++GA++ +    ++NL  A++ +  
Sbjct: 102 HNLGAILRTCDCIRADGVIIGKHRNVRLTPTVAKVSTGAIDTVKVSVVTNLVQAIKYLKK 161

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G+  +G   ++ +   +   +  + L++G+EG G+    ++       L M G + +LN
Sbjct: 162 QGYWVVGTDFENSRDYREGQYDVPLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLN 221

Query: 265 VSNAAAVALY 274
            S AA + LY
Sbjct: 222 ASVAAGILLY 231


>gi|163868747|ref|YP_001609964.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
           105476]
 gi|161018411|emb|CAK01969.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           tribocorum CIP 105476]
          Length = 271

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 6/188 (3%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           P P+  VP + +D I G   VH+G+      +T P L   L  +    L++VL  +++  
Sbjct: 76  PCPIYCVPQKVMDDITGFH-VHRGILGIGKRKTLPSLQSFLKNLPEKALILVLCGISNHD 134

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I R+A AF+  GII  K           + ++GA   +PY + +++ D +  +H  
Sbjct: 135 NMGSIFRNAAAFASHGIIVDKTSCDPLYRKSIRVSAGAALKVPYTQNADINDIIAALHDE 194

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            F    LS  +   L Q  K  + ALI G EG GL P   + +T++  + M     +LNV
Sbjct: 195 NFHLYALSPSAPHTLRQAHKTKRTALIFGTEGDGLPPHVLQQSTAL-RIPMTDGFDSLNV 253

Query: 266 SNAAAVAL 273
           + A+ +AL
Sbjct: 254 ATASGIAL 261


>gi|153855859|ref|ZP_01996834.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
 gi|149751827|gb|EDM61758.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
          Length = 265

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD++ DPHN+GAI+R+A      G+I  KR +   +A +A++++GAL + P  +++
Sbjct: 118 FLIILDNIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVT 177

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++ +   G   +    D     +  +K   I L++G EG+G+    ++T    A 
Sbjct: 178 NLVKTMEDLKKKGLWFVCADMDGDVMYDVNMKG-PIGLVIGNEGEGVGRLVKDTCDFTAR 236

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 237 IPMKGDIDSLNASVAAGVLAY 257


>gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens]
 gi|74736506|sp|Q6IN84|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens]
 gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
           [synthetic construct]
          Length = 353

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 120/257 (46%), Gaps = 38/257 (14%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQT 100
            L+G+     AL    R + +LL           +  L R+    ++P   P +    Q 
Sbjct: 51  LLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRR----QK 106

Query: 101 IDKIVGKEAVHQGLALETAPLL-SPTLDAVRNS------QLLMVLDHVNDPHNIGAILRS 153
           +D +  +  VHQG+ +E +PL   P  +A   S      QL +VLD + DP N GA+LRS
Sbjct: 107 LDTMC-RYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTI 210
           A     D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+    T+
Sbjct: 166 AHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225

Query: 211 GLSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMP 257
           G  S ++ P   EI               L+LG EG GL  + Q +     T +    +P
Sbjct: 226 GCPS-TEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLP 284

Query: 258 GIIKALNVSNAAAVALY 274
             +++LNVS AA + L+
Sbjct: 285 PGLESLNVSVAAGILLH 301


>gi|295698469|ref|YP_003603124.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
           pediculicola USDA]
 gi|291157499|gb|ADD79944.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
           pediculicola USDA]
          Length = 259

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 119/236 (50%), Gaps = 16/236 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL-----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +YG+HTV++ LN+ +  +F+L+     +  N + ++           ++ V  + +D + 
Sbjct: 6   IYGIHTVNSYLNDKN-VVFELVYILKNSRNNRIFQIKKKLE-SFGVSIRLVNRRFLDHL- 62

Query: 106 GKEAVHQG-LALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                HQG LA+        +++ +     +   L ++LD + D  N+G+ LR+A  F  
Sbjct: 63  SNYISHQGILAVINCFQKKASMNILNKIPFQKKILFLILDGITDVRNLGSCLRTAHFFGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I +K  S   + ++ K + GA  ++P IR +NL + ++K+  +  Q +G    + + 
Sbjct: 123 DAVIVSKNRSARINEIVEKVSCGASRYVPMIR-TNLVNCIEKLKKYDVQVLGTDEKANRS 181

Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + EI   KIA+I+G E KG+R   ++  + +  +       +LNVS  A + L+
Sbjct: 182 IYDLEINEKKIAIIVGNEEKGIRQIIKKNCSRLFRIPTKKQTSSLNVSVTAGIFLF 237


>gi|26553475|ref|NP_757409.1| rRNA methylase [Mycoplasma penetrans HF-2]
 gi|26453481|dbj|BAC43813.1| rRNA methylase [Mycoplasma penetrans HF-2]
          Length = 238

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 95/180 (52%), Gaps = 13/180 (7%)

Query: 108 EAVHQ---GLALETAPLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           E VHQ   G+A E++  +    D+          + ++++VLD + DP N GAI R++ +
Sbjct: 53  EVVHQNILGIAKESSLTIHTDFDSFIEKINNLNTDKKIILVLDEIQDPGNFGAICRTSKS 112

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  K      +  + K++ G + ++ +++++NL++ L K+    + T+  + D 
Sbjct: 113 FQVAGIIFKKNNQIQINETVIKTSLGTVNYLNFLKVNNLSEVLNKLKKENYWTVCTALDE 172

Query: 217 KKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K     + K D  K+ +I+G E KG+    ++ +  +  + M   +++LNVS + A+ LY
Sbjct: 173 KSIPLSKFKTDINKLVVIVGNENKGVSELIKKDSDFIVKIEMDSSVQSLNVSVSTAIILY 232


>gi|168187716|ref|ZP_02622351.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           C str. Eklund]
 gi|169294429|gb|EDS76562.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           C str. Eklund]
          Length = 263

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 87/171 (50%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+     P     ++ + N          +++LD + DPHN+G+I+R+A      GI+
Sbjct: 85  HQGVMAIVTPYKYSEVEDIFNYAKEKGEEPFILILDEIEDPHNLGSIMRTAEICGVHGIV 144

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA E++   +++N+  A+ ++   G    G   D +    Q 
Sbjct: 145 IPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAIDEIKERGTWVYGADMDGENYCFQT 204

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +AL++G+EG+G+   T++    +  + M G I +LN S AA + +Y
Sbjct: 205 NFKGAVALVIGSEGRGISKLTKQKCDVLVKIPMIGKITSLNASVAAGIMMY 255


>gi|94268732|ref|ZP_01291270.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
 gi|93451488|gb|EAT02319.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
          Length = 302

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 114/251 (45%), Gaps = 28/251 (11%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVK--TVPPQ 99
           QPE   ++G+H V+  L      + +L LA      R+     L   H  P+    +PP 
Sbjct: 42  QPEASLVWGIHPVTELLRRRPGLVRELYLAGGRDDGRVAAIVELAASHRIPLDRAGLPPA 101

Query: 100 TIDKIVGKEAVHQGLALETAP--------LLS--PTLD-------AVRNSQLLMVLDHVN 142
                   E  HQG+A   AP        LL   P L        A     LL+VLD + 
Sbjct: 102 A------AELPHQGVAARVAPPSPLSLAELLQRLPALGPEPASSPAASPPPLLLVLDSLQ 155

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GA+LRSA AF  DG+I  K  S   S  + K+A+G    +   R +NL  AL  +
Sbjct: 156 DPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLAGALGTL 215

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF   G S ++   L +        L+LG E KG+RP  ++    +  + +   +++
Sbjct: 216 KKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKKHCDFLLAIPLAAGVES 275

Query: 263 LNVSNAAAVAL 273
           LNVS AA + L
Sbjct: 276 LNVSVAAGIML 286


>gi|255546313|ref|XP_002514216.1| rRNA methylase, putative [Ricinus communis]
 gi|223546672|gb|EEF48170.1| rRNA methylase, putative [Ricinus communis]
          Length = 517

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 10/158 (6%)

Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+ +PL       L P         L + LD V DP N+GAI+RSA  F   GI+
Sbjct: 301 HQGLVLDASPLEMVKIMELDPVSSEDEKGSLWVALDEVTDPQNLGAIIRSAYFFGAAGIV 360

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222
              + S   S V++K+++G+LE +      N+   L      G++ +G S  S   PL +
Sbjct: 361 LCAKNSAPLSGVVSKASAGSLEIMELRYCRNMMQFLVSSADNGWRVLGGSVASMAVPLNE 420

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +  +   L+LG+EG GLRP  + + T +  + +PG I
Sbjct: 421 VVPGEPTILVLGSEGTGLRPLVERSCTQL--VRIPGNI 456


>gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana]
 gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana]
 gi|330251842|gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis
           thaliana]
          Length = 589

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 57/300 (19%)

Query: 27  HRDYKKMQSFN----QKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           +R++ + +S+     Q++  +S P  E   +YGV  V AAL+   R+ + L   +     
Sbjct: 286 YRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPVLAALSVGRREFYALYVQEG---- 341

Query: 81  LDWDANLPHP-----------------FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-- 121
           LD  +N                       +K      ++ +V     HQGL L+ +PL  
Sbjct: 342 LDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN-MVADNRPHQGLVLDASPLEL 400

Query: 122 -----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                L P         L + LD V DP N+GAI+RSA  F   G++   + S   SAV+
Sbjct: 401 VKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVV 460

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGA 235
           +K+++G+LE +      N+   L+     G++ +G S   K   L + +      L+LG 
Sbjct: 461 SKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGN 520

Query: 236 EGKGLRPKTQETATSMAHL--HMPG-------------------IIKALNVSNAAAVALY 274
           EG GLRP  + + T +  +  +MP                     +++LNVS AA + L+
Sbjct: 521 EGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEGFRSFLAVESLNVSVAAGLFLH 580


>gi|153831018|ref|ZP_01983685.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae
           623-39]
 gi|148873496|gb|EDL71631.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae
           623-39]
          Length = 203

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 26/210 (12%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIF----------QLLATKNALARLDWDANLPHPFPVKTV 96
           N  +YG+H V+A L  +P+R +           +LL   N L RL           ++ +
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLG--------VSIQEM 54

Query: 97  PPQTIDKIVGKEAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAI 150
             + +D    + A HQGL     P   L    LD   A     LL+VLD V DPHN+GA 
Sbjct: 55  SRKALDD-KAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGAC 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A     +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +
Sbjct: 114 LRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           G + ++   + Q      +A+++GAEG G+
Sbjct: 174 GTAGEATHDIYQSKLTGPLAIVMGAEGDGM 203


>gi|157364334|ref|YP_001471101.1| RNA methyltransferase [Thermotoga lettingae TMO]
 gi|157314938|gb|ABV34037.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga lettingae
           TMO]
          Length = 233

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 98/183 (53%), Gaps = 5/183 (2%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           ++K+ G+E  +QG+ ++     +   +   +   +++LDH+ DPHN+GAI+R+ V     
Sbjct: 54  LEKLCGEEK-NQGIVIDLD--FNYADETYLDGDFIVLLDHIVDPHNLGAIIRTCVGAGVS 110

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+ TK  S   +  + K ++G +  IP + ++N+   ++K+ + G+   G   + K   
Sbjct: 111 AIVITKDRSAKITPAVVKVSAGTVFRIPVVIVTNIVYTIEKLKNKGYWVYGADMNGKNLY 170

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           E+   +  +A++ G EG+GL    +E    +  + M   I +LNVS +A + L+ I++  
Sbjct: 171 EEGFIS-PVAIVFGNEGEGLSRLVKERCDQLISIPMRSKIDSLNVSVSAGIILFEISRKC 229

Query: 280 FAK 282
           F K
Sbjct: 230 FMK 232


>gi|150021393|ref|YP_001306747.1| RNA methyltransferase [Thermosipho melanesiensis BI429]
 gi|149793914|gb|ABR31362.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho
           melanesiensis BI429]
          Length = 238

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNI 147
           PF   T+    I + +  E  HQG+ ++           +   +   L++LD + DPHN 
Sbjct: 45  PF---TIANNRILEKLSNEKKHQGVVIDIGDFEYKDESIIEKMEKPFLVILDQIQDPHNF 101

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R++VA   D ++  K  S   +  + K + G L     I ++N+   ++K+ + G 
Sbjct: 102 GAIIRTSVAAGADALVIPKNNSVKVTPTVVKVSVGTLFKTNIIEVTNIARFIEKIKTLGI 161

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G + D K+  + ++K   +A++LG EG G+R   +     +  + M   +++LNVS 
Sbjct: 162 WVYGAAMDGKEYFKVDLK-KPVAIVLGNEGNGIRENVKNKCDDLISIPMKNNVESLNVSV 220

Query: 268 AAAVALY 274
           +A + LY
Sbjct: 221 SAGILLY 227


>gi|325287036|ref|YP_004262826.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
           DSM 7489]
 gi|324322490|gb|ADY29955.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
           DSM 7489]
          Length = 245

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 11/233 (4%)

Query: 51  LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  A+N      KIF     K  L R   +        +  VP + ++++    
Sbjct: 7   IYGIRAIIEAINANEALDKIFVQKGLKGDLFRELENLARKKGISISYVPVEKLNRLTKNN 66

Query: 109 AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+       L  ++   + + L ++LD ++D  N GAI+R+A     DG
Sbjct: 67  --HQGVVANISPITFHNFEELVESVIQKKEAPLFLLLDQLSDVRNFGAIIRTAECTGVDG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+ +   +A   K+++GA   +P  +++++ DA+  + + G + I  S  ++  + 
Sbjct: 125 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVNHIKDAVHYLQASGVKIIAASEKTENTIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  A+I+G+E  G+ P   + A   A L + G I++LNVS A  V LY
Sbjct: 185 DVSFKEASAIIMGSEDVGISPSILKAADHTAKLPLLGEIESLNVSVACGVFLY 237


>gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542]
 gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542]
          Length = 339

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 10/176 (5%)

Query: 108 EAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           ++VHQG+A++  P        LL    + +    L++ LD V DP N+GA+LRSA AF  
Sbjct: 155 DSVHQGVAIQVPPYEYRDPEDLLDIAAE-LEQPALIVALDGVTDPRNLGAVLRSAGAFGA 213

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +R S   +A   K ++GA   +P  R +NLT  L +  S G   +GL    +  
Sbjct: 214 HGVLVPERRSAGVTASAWKVSAGAAARVPVARATNLTRTLLEYKSAGCFIVGLDGGGEVS 273

Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +     D I L++G+EGKGL    +ET  ++A + +   +++LN   AA +ALY
Sbjct: 274 VGDLAFSVDPIVLVVGSEGKGLSRLVRETCDAIASIPIASAVESLNAGVAAGIALY 329


>gi|87310366|ref|ZP_01092496.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
 gi|87286865|gb|EAQ78769.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
          Length = 265

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 89/189 (47%), Gaps = 7/189 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNI 147
           P+  +P   + ++VG    H+G +A    PLLS         R    LMV   V DP N+
Sbjct: 72  PIYCLPRDQLQELVGFN-FHRGVMACARRPLLSDLQQVAWPDRERLTLMVAAQVVDPENL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+++R+  AF  D I+   R     S    + ++G    IP +  SNL D L    S GF
Sbjct: 131 GSLIRAGSAFGADAILMDDRCGDPYSRRALRVSTGHAFKIPIVETSNLLDQLNVARSLGF 190

Query: 208 QTIGLSSD-SKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           Q I    D S  PL++E  ++D+ AL+ G EG GL       A     + M     +LNV
Sbjct: 191 QLIATVLDESAIPLKKETARHDRTALLFGNEGFGLEADLTAMADRCVTIPMSRGSDSLNV 250

Query: 266 SNAAAVALY 274
           S AA V LY
Sbjct: 251 SMAAGVFLY 259


>gi|297564710|ref|YP_003683682.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
           DSM 9946]
 gi|296849159|gb|ADH62174.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
           DSM 9946]
          Length = 237

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL  E A L     +A        +   LL++LD V DP N GAI+R+AVA    G+I
Sbjct: 59  HQGLVAEVAELKFSDPEAPFRLAKERQEGVLLVLLDGVTDPRNYGAIIRTAVALGAHGVI 118

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
           + +R S   S ++ K+++G    +P +++ NL   ++++   G    G S  ++K L   
Sbjct: 119 SEERRSAPLSPLVLKASAGTAHKLPLVQVKNLPRYMEEIKKRGVWIYGASGKAQKDLTML 178

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +A+++G+EG+G+R   ++     A + +    ++LN S A A+ LY
Sbjct: 179 DYKRPLAIVIGSEGEGMRRLVEQRCDETARIPLGPGAESLNASVALAIFLY 229


>gi|3687231|gb|AAC62129.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 57/300 (19%)

Query: 27  HRDYKKMQSFN----QKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           +R++ + +S+     Q++  +S P  E   +YGV  V AAL+   R+ + L   +     
Sbjct: 274 YRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVSPVLAALSVGRREFYALYVQEG---- 329

Query: 81  LDWDANLPHP-----------------FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-- 121
           LD  +N                       +K      ++ +V     HQGL L+ +PL  
Sbjct: 330 LDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN-MVADNRPHQGLVLDASPLEL 388

Query: 122 -----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                L P         L + LD V DP N+GAI+RSA  F   G++   + S   SAV+
Sbjct: 389 VKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVV 448

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGA 235
           +K+++G+LE +      N+   L+     G++ +G S   K   L + +      L+LG 
Sbjct: 449 SKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGN 508

Query: 236 EGKGLRPKTQETATSMAHL--HMPG-------------------IIKALNVSNAAAVALY 274
           EG GLRP  + + T +  +  +MP                     +++LNVS AA + L+
Sbjct: 509 EGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEGFRSFLAVESLNVSVAAGLFLH 568


>gi|229815836|ref|ZP_04446160.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
           13280]
 gi|229808531|gb|EEP44309.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAV--RNSQLLMVLDHVNDPHN 146
           VK+VP   +D I      HQG+ LE        LS  + A    +  L++VLDHV D  N
Sbjct: 111 VKSVPRTQLDAI-SSHGAHQGIVLEVGKFPYADLSDIIAAAPAGSPALVVVLDHVTDAGN 169

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAI+RSA      G++   + S   +    K+++GA+ H+P  ++ N+  AL+ + S G
Sbjct: 170 FGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHLPIAQVPNIARALEDLKSAG 229

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G +  ++          ++AL++G+EG G+     +T      L   G  ++LNV+
Sbjct: 230 FWVGGATEHAEDVCWDAPFEGRVALVMGSEGDGISRLVLDTCDFTTKLPQRGETESLNVA 289

Query: 267 NAAAVALY 274
            AA    +
Sbjct: 290 QAATALCF 297


>gi|319941489|ref|ZP_08015817.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
 gi|319805109|gb|EFW01939.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
          Length = 323

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 5/169 (2%)

Query: 111 HQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+A      E     +  LD + +  LL++LD V DP N GA LR+A A     +I  
Sbjct: 134 HQGIAAIAAERENTLDFADLLDQITDRTLLLILDGVTDPRNFGACLRAADAAGVQAVIVP 193

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  S   +   AK+A+GA E +P + ++NL  A+ ++   G    G + ++   +    +
Sbjct: 194 RDRSARMTPAAAKAAAGAAETVPVVSVTNLASAIMELRDNGVFVAGTAGETDTTIYDVAQ 253

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A +LGAEG+GLR  T+     +A + M G +++LNVS A+ + L+
Sbjct: 254 ARAFAWVLGAEGEGLRQLTRRRCDVLAAIPMVGSVESLNVSVASGICLF 302


>gi|312898322|ref|ZP_07757712.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
           micronuciformis F0359]
 gi|310620241|gb|EFQ03811.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
           micronuciformis F0359]
          Length = 247

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 81/141 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++ D + D HN+GAI+R+A       I+  +R+S   +  +AK+++GA+E++P +RI 
Sbjct: 97  FLVLADGIEDVHNLGAIIRTAECAGVHAILVPQRHSAPINETVAKTSAGAVEYMPVVRIG 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+T  L+++   GF  +G     ++       +  + L++G+EGKG+    ++    +  
Sbjct: 157 NVTTTLKQLKKQGFWVLGADMVGEENYYSLSADMPLVLVIGSEGKGISRLVKDNCDVLVR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AAA+ +Y
Sbjct: 217 IPMFGRINSLNASVAAALLMY 237


>gi|317488758|ref|ZP_07947292.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|316912128|gb|EFV33703.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
          Length = 248

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 16/195 (8%)

Query: 93  VKTVPPQTIDKIVGK--EAVHQGLALETAPL----LSPTLDAVRNSQ-------LLMVLD 139
           V+ VP + +D   GK     HQG+  + A      +   +DA   S        L+++LD
Sbjct: 50  VEMVPRKVLD---GKSDRGSHQGVMAKAASFPYVGIGDVIDAAGKSAEQHDGRALVIILD 106

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           H+ D  N+GA+ RSA A    GI+   + S    A   KS++GA+ H+P  ++SNL   +
Sbjct: 107 HITDAGNLGAVSRSAEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTM 166

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++   GF   G +  +   + +     KIAL++G E +G+     E    +  L + G 
Sbjct: 167 SRLKEEGFWIAGATEHASDLIWKANLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGE 226

Query: 260 IKALNVSNAAAVALY 274
           + +LNV+ AA   +Y
Sbjct: 227 VASLNVAQAATACMY 241


>gi|297587634|ref|ZP_06946278.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297574323|gb|EFH93043.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 244

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 8/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPH 145
           V+ V  + I+K     A HQG+  +       ++D        +     L++LD + DPH
Sbjct: 48  VEYVDKKYIEKFAENTA-HQGVMAKMPSFGYSSVDEMIIYAKKINEDPFLIILDEITDPH 106

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A    C G+I  K  +   +A   K+++GA+ +I   R++N+T  +  +   
Sbjct: 107 NLGSIIRTAEVAGCHGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEH 166

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                G   ++ +   Q      I L++G EGKG+    +E    +  + M G  ++LN 
Sbjct: 167 NIWIYGACGEASQTHTQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNA 226

Query: 266 SNAAAVALY 274
           SNAA++ +Y
Sbjct: 227 SNAASILIY 235


>gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-66c26]
 gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP
           107932]
 gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-63q42]
 gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC
           43255]
 gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-76w55]
 gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-97b34]
 gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-37x79]
 gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-32g58]
          Length = 245

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    +      L   +D  +N       ++LD + DPHN+G+I+R+A A    G+I
Sbjct: 65  HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVI 124

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR S   + V+AK+++GA+E++P  +++N+ + ++++   G        D +   +Q 
Sbjct: 125 IPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGETFYKQN 184

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    + +++G+EG G+    ++    +  + M G + +LN S A  + LY
Sbjct: 185 LTG-PLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLY 234


>gi|332654055|ref|ZP_08419799.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
           bacterium D16]
 gi|332517141|gb|EGJ46746.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
           bacterium D16]
          Length = 261

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 67/107 (62%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V D ++DPHN+GA++R+A A    G+I  KR S   +AV+AK+++GA+ H+P  R+ 
Sbjct: 112 LIVVCDELSDPHNLGAVIRTADAAGAHGVIIPKRRSAGLTAVVAKTSAGAVAHVPVARVP 171

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           NL  AL+++   G    G +++    L Q       A+++G+EG G+
Sbjct: 172 NLVAALKELQQAGVWVFGTAAEGTTSLYQADLKGPAAIVIGSEGDGM 218


>gi|325679612|ref|ZP_08159187.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
 gi|324108642|gb|EGC02883.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
          Length = 257

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 27/208 (12%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVN 142
            PVK V  Q +D  +   A HQG+         +E   +L    D   +   +++ D + 
Sbjct: 61  IPVKQVREQKLD-FMAHGAAHQGVIAIGACAEYVEVDDILKIAADKGEDP-FIIICDEIE 118

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDAL 199
           DPHN+GAI+R+A A    GII  KR S S +  + K+++GA   +P  R++NL    D L
Sbjct: 119 DPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVANLPAAVDDL 178

Query: 200 QKMHSWGFQTIGLSS-----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +K   W + T G        D + P         + L++G+EG G+    +E    +  L
Sbjct: 179 KKQGIWIYGTDGAGENYSGVDMRGP---------VGLVVGSEGFGMGRLMKEKCDFLLSL 229

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M G I +LN S AA + +Y      AK
Sbjct: 230 PMAGKITSLNASVAAGIFMYEVVRQRAK 257


>gi|150005407|ref|YP_001300151.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254884288|ref|ZP_05256998.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|149933831|gb|ABR40529.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254837081|gb|EET17390.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
          Length = 255

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 15/248 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103
           +N  ++GV  V  A+    R+I ++L  K+  + L  +  A L +   PV+ VP + I++
Sbjct: 4   KNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +       L P L     + L ++LD + D  N GAI R+   
Sbjct: 63  ITRKN--HQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  +P  R  NLT+ ++ +   GF+ +  +   
Sbjct: 121 AGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274
                +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA 240

Query: 275 ITQNHFAK 282
           + Q  F +
Sbjct: 241 VKQRGFTE 248


>gi|126697621|ref|YP_001086518.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630]
 gi|260681827|ref|YP_003213112.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
 gi|260685425|ref|YP_003216558.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
 gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3
           [Clostridium difficile]
 gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
 gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
          Length = 248

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 90/171 (52%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    +      L   +D  +N       ++LD + DPHN+G+I+R+A A    G+I
Sbjct: 68  HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHGVI 127

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR S   + V+AK+++GA+E++P  +++N+ + ++++   G        D +   +Q 
Sbjct: 128 IPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGETFYKQN 187

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    + +++G+EG G+    ++    +  + M G + +LN S A  + LY
Sbjct: 188 LTG-PLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLY 237


>gi|46199993|ref|YP_005660.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|55980265|ref|YP_143562.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|46197620|gb|AAS82033.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|55771678|dbj|BAD70119.1| RNA methyltransferase, TrmH family [Thermus thermophilus HB8]
          Length = 238

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 12/199 (6%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVR------NSQLLMVLDHVNDP 144
           P   VP   +D ++ +   HQG+A E   P  +   DA+R         LL+ LD V DP
Sbjct: 41  PYTLVPRIELDTLL-RTTHHQGIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDP 99

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N GA++RSA+A    G+++ +R +   S +  K+++GA   +P +++ NL   L+ +  
Sbjct: 100 RNYGAMIRSALALGAHGVVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKE 159

Query: 205 WGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G    GL    +K P E +     + L++G+EG+G+R   +ET   +  + +    ++L
Sbjct: 160 EGLWVYGLDVRGEKAPWELDYAR-PLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESL 218

Query: 264 NVSNAAAVALYITQNHFAK 282
           N S A  +ALY  Q   A+
Sbjct: 219 NASVALGIALY--QARLAR 235


>gi|149919873|ref|ZP_01908349.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
           SIR-1]
 gi|149819320|gb|EDM78753.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
           SIR-1]
          Length = 325

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 87/148 (58%), Gaps = 5/148 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +++++LD V DPHN+GA++R+A  F    ++  +  +   SAV  +S++GA E +P 
Sbjct: 175 RGHRIIVLLDGVQDPHNLGAVIRNAEFFGATAVVWGQDRAAPLSAVAVRSSAGATERLPL 234

Query: 190 IRISNLTDALQKMHSWG-FQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQ 245
            +++N+  AL++  + G +  +G   D   P+    Q+  +D I L+LG+E +G+R  T+
Sbjct: 235 GQVTNVARALEQAKASGTWWVVGTVVDEGTPVHEFAQDPPSDMI-LVLGSEERGMRRLTR 293

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E    +  +   G + +LNVS A AVAL
Sbjct: 294 ERCDFLVTIARGGSLGSLNVSAAGAVAL 321


>gi|108801699|ref|YP_641896.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
 gi|119870850|ref|YP_940802.1| RNA methyltransferase [Mycobacterium sp. KMS]
 gi|123368666|sp|Q1B2P4|Y4736_MYCSS RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736
 gi|254803958|sp|A1UMF4|Y4822_MYCSK RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mkms_4822
 gi|108772118|gb|ABG10840.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
 gi|119696939|gb|ABL94012.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. KMS]
          Length = 314

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 8/185 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           VP   +D++    A+HQGL L+  P        L  T  A     LL+ LD+++DP N+G
Sbjct: 122 VPRSDLDRM-SNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLG 180

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RS  AF   G++  +R S S +AV  ++++GA   +P  R +NL   L+     G Q
Sbjct: 181 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ 240

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +D    L++      + +++G+EGKGL    +E   ++  + M G  ++LN S A
Sbjct: 241 VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA 300

Query: 269 AAVAL 273
           A V L
Sbjct: 301 AGVVL 305


>gi|304373038|ref|YP_003856247.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
           HUB-1]
 gi|304309229|gb|ADM21709.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
           HUB-1]
          Length = 225

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 15/230 (6%)

Query: 50  FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G +++  A+ N  P +KI+        L ++  + NL + + V  V    +DK+  K
Sbjct: 4   YICGKNSLLDAIKNNVPIKKIY--------LTKIVPNLNL-NTYQVHIVEKSFLDKL-AK 53

Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
              HQG   E   +    ++++   N + ++VLDH+ D HN+GAI+RSA A     II  
Sbjct: 54  GINHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILP 113

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI 224
           K      +  + + +SG    I +I +++L    +K+    F     S S + KPL+Q +
Sbjct: 114 KDNCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASSLSKTAKPLDQIV 173

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            N   A++LG+E KG+       +  + ++ M G +++LNVS AA + L+
Sbjct: 174 FNQPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223


>gi|125571975|gb|EAZ13490.1| hypothetical protein OsJ_03406 [Oryza sativa Japonica Group]
          Length = 427

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 10/160 (6%)

Query: 111 HQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+ +PL    +  L+ VR     + + + LD V DP N+GAI+RSA  F  +G++
Sbjct: 207 HQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVV 266

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222
              + S   S V++K+++G+LE I  +   N+   L      G++ +G +   K  PL +
Sbjct: 267 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPLSE 326

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +  +   L+LG+EG GLRP  + + T +  + +PG +  
Sbjct: 327 VVPGEPTILVLGSEGTGLRPLVERSCTHL--VRIPGNVDG 364


>gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 236

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 21/236 (8%)

Query: 50  FLYGVHTVSAALNNPSR-KIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDK 103
           +++G +TV+A L +  + K   L    N     ALA+            V+ V    +DK
Sbjct: 4   YIFGKNTVTAYLKSGQKPKNLYLFNKGNYQEIVALAK-------EQGIRVQFVDKFRLDK 56

Query: 104 IVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +   + VHQG+ +E        L   +   +N+ L+++ D + DPHN+GAILR+  A   
Sbjct: 57  MA--DGVHQGVVIEIQDYKYHSLQEIIKGAKNN-LIVLCDQLEDPHNLGAILRTCDACGV 113

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG++  K  S   ++ +AK ++GA+  +     +N+  A+ ++   G+  +   +     
Sbjct: 114 DGVVVGKHRSVGLTSTVAKVSTGAINTVKVAEATNMVKAIAELKEAGYWVVAAENAVDAV 173

Query: 220 LEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              E   D  + L++G+EGKG+    ++    +  + M G + +LNVS A  V L+
Sbjct: 174 DYTEFNVDMPLVLVVGSEGKGISRLVKKECDILTTIPMQGSVNSLNVSVATGVLLF 229


>gi|126437686|ref|YP_001073377.1| RNA methyltransferase [Mycobacterium sp. JLS]
 gi|254806451|sp|A3Q6V9|Y5122_MYCSJ RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mjls_5122
 gi|126237486|gb|ABO00887.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. JLS]
          Length = 314

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 8/185 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           VP   +D++    A+HQGL L+  P        L  T  A     LL+ LD+++DP N+G
Sbjct: 122 VPRSDLDRM-SNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLG 180

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RS  AF   G++  +R S S +AV  ++++GA   +P  R +NL   L+     G Q
Sbjct: 181 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ 240

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +D    L++      + +++G+EGKGL    +E   ++  + M G  ++LN S A
Sbjct: 241 VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA 300

Query: 269 AAVAL 273
           A V L
Sbjct: 301 AGVVL 305


>gi|57899959|dbj|BAD87895.1| putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group]
          Length = 517

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 10/160 (6%)

Query: 111 HQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+ +PL    +  L+ VR     + + + LD V DP N+GAI+RSA  F  +G++
Sbjct: 297 HQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMDPQNLGAIIRSAYFFGAEGVV 356

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222
              + S   S V++K+++G+LE I  +   N+   L      G++ +G +   K  PL +
Sbjct: 357 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPLSE 416

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +  +   L+LG+EG GLRP  + + T +  + +PG +  
Sbjct: 417 VVPGEPTILVLGSEGTGLRPLVERSCTHL--VRIPGNVDG 454


>gi|51598770|ref|YP_072958.1| rRNA methylase [Borrelia garinii PBi]
 gi|51573341|gb|AAU07366.1| rRNA methylase [Borrelia garinii PBi]
          Length = 246

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 80/141 (56%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N GAILR+A  FS D ++TT++ S  ++  + +++SGA +++  I ++
Sbjct: 97  FILLLDEIEDPQNFGAILRTAEQFSIDLVVTTQKRSAKDNLTVLRTSSGASQYVKKITVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + +  +   GF         +   + +I + KIALILG E KG+    +E +  +  
Sbjct: 157 NINNTIYFLKKHGFWIYAGDIKGQDINKIKINDKKIALILGNESKGVHKLIKENSDFLIR 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I +LNVS +  + ++
Sbjct: 217 IPTSGKIDSLNVSVSTGILIF 237


>gi|296271712|ref|YP_003654343.1| RNA methyltransferase [Arcobacter nitrofigilis DSM 7299]
 gi|296095887|gb|ADG91837.1| RNA methyltransferase, TrmH family, group 3 [Arcobacter
           nitrofigilis DSM 7299]
          Length = 230

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 4/167 (2%)

Query: 111 HQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           HQG  L+       T ++ ++ +  ++VLD + D  NIGAI R+A A   DGI+     S
Sbjct: 61  HQGFFLKLKEEFDYTPINEMKQNNFIVVLDGLTDVGNIGAITRTAYALGVDGIVAAGVKS 120

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKND 227
            +ES V+ +++SGA+  +P+    N  D   ++   GF  IG  ++    K      K+D
Sbjct: 121 LNESGVI-RTSSGAMLDMPFSLYPNSLDLANELKQSGFALIGATMNGTDLKKYGTITKDD 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K+AL LG+EG+GL  K          + M     +LNVS AA + +Y
Sbjct: 180 KVALFLGSEGEGLSNKIIGKLDLKVSIGMENNFDSLNVSVAAGILIY 226


>gi|186701914|ref|ZP_02971563.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|186700651|gb|EDU18933.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 239

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 77/144 (53%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++LD + DP N GAI+R+A  F  D II  K +  S + ++ K++ GA+ +I  
Sbjct: 87  KKNALVLILDEIEDPRNFGAIIRTANGFGVDAIIYKKHHQASINDLVIKTSMGAINYIYM 146

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I ++NL++ ++ +   GF     S    +  E+    +K   I+G E KG+ P   + A 
Sbjct: 147 IEVNNLSNTIKNLQDEGFWVYATSLLKSQSYEKVDYANKTVFIVGNENKGVSPLILKNAD 206

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               + M G +++LNV  A  + L
Sbjct: 207 QSIRIDMFGDVQSLNVGVATGIIL 230


>gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON]
 gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis
           50-1 BON]
          Length = 249

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    AP     ++ +  +         +++LD + DPHN+GAI+R+A      GII
Sbjct: 71  HQGVVAYVAPYTYAQIEDILEAAAQKHQDPFVLLLDGITDPHNMGAIIRTAECMGAHGII 130

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +A + K+++GA+E+I    ++N+   ++++   G   +G     +     +
Sbjct: 131 IPKDRSIGITAAVVKASAGAVEYIHIAAVTNMAQTVERLKKDGLWIMGADMRGRPCRSMD 190

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +K   I LI+G EG G+R   +E    +  + M G I +LN S AA + +Y
Sbjct: 191 LKG-PIGLIIGGEGSGIRRLVKEKCDVLLSIPMSGHIASLNASVAAGMLMY 240


>gi|89337263|ref|NP_663408.2| rRNA methyltransferase 1, mitochondrial precursor [Mus musculus]
 gi|123796682|sp|Q99J25|MRM1_MOUSE RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|74208629|dbj|BAE37571.1| unnamed protein product [Mus musculus]
 gi|74208738|dbj|BAE37607.1| unnamed protein product [Mus musculus]
 gi|112180309|gb|AAH05625.2| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
 gi|151358036|emb|CAI35310.2| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
          Length = 320

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 23/198 (11%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151
           Q +D + G + VHQG+ +E +PL     D   ++       QL +VL+ + DP N+GA++
Sbjct: 103 QKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQLWLVLEGLQDPRNLGAVM 161

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA     D +IT++R S   + V++K+++GA+E +      +L   LQ     G+  +G
Sbjct: 162 RSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLPGFLQAKAQQGWLVVG 221

Query: 212 --------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPK----TQETATSMAHLHM 256
                   +S  SK P+   ++   +    L+LG+EG GL  +     Q   T +   H+
Sbjct: 222 TVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQEVFASCQLLLTILPRRHL 281

Query: 257 PGIIKALNVSNAAAVALY 274
           P  +++LNVS A  + L+
Sbjct: 282 PPGLESLNVSVATGILLH 299


>gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 318

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 13/182 (7%)

Query: 109 AVHQGLALET--------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +HQGLAL+           L++  L A  ++ LL+ LD++ DP N+GA++RS  AF   
Sbjct: 137 GLHQGLALQVPEYQYAHPEDLMADAL-AGSSAPLLVALDNITDPRNLGAVIRSVAAFGGH 195

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +R S   +AV  ++++GA   +P     NL   L      G Q +GL +     L
Sbjct: 196 GVVIPQRRSAGMTAVAWRTSAGAAARLPVATTPNLNRTLLDWAKKGAQIVGLDAGGDVSL 255

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +         +++G+EGKGL    +E   S+  + +   +++LN S AA V L    + F
Sbjct: 256 DDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASDVESLNASVAAGVVL----SEF 311

Query: 281 AK 282
           A+
Sbjct: 312 AR 313


>gi|256421956|ref|YP_003122609.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
           DSM 2588]
 gi|256036864|gb|ACU60408.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
           DSM 2588]
          Length = 263

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 17/259 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPE-NLFLYGVHTVSAAL--NNPSRKIFQLL-ATKNALARLD 82
            R +KK   F Q   H  +P+ +  + G   +  A+       +IF L  AT   + ++ 
Sbjct: 3   QRKFKKPGGFRQ---HAPRPKASSLVIGRQPIVEAMKAGKAIERIFMLRGATGEIIPQIR 59

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLL 135
             A   +  P+  VP + ++ +    A HQG    T  +    L  V         + L 
Sbjct: 60  QLAE-QYNIPINLVPVEKLNGLT--SANHQGCVAITGNINYLDLQDVISHVTEQGQTPLF 116

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  NIGAI RSAV      II   R   + +    KS++GALE I   R+++L
Sbjct: 117 LILDGITDVRNIGAIARSAVCCGAQAIIIPDRGIAALNEEAIKSSAGALETISVCRVNSL 176

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             A+  +H  G + I    +++  L      + +A+I+G+E KG+ P   + + ++ H+ 
Sbjct: 177 LKAIDTLHLNGIKVIASEMEAETKLYDCQLQEPVAVIMGSEDKGVFPALIKASDTLFHIP 236

Query: 256 MPGIIKALNVSNAAAVALY 274
           M G  ++ NVS AA + LY
Sbjct: 237 MAGNFESFNVSVAAGIILY 255


>gi|317056668|ref|YP_004105135.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
 gi|315448937|gb|ADU22501.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
          Length = 259

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 25/199 (12%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVND 143
            PVK V    +D + G  A HQG+    A      ++ + N          +++ D + D
Sbjct: 62  IPVKQVREIKLDSMAGG-AAHQGVIAVGACAEYVEVEDILNIAREKSEDPFIIICDEIED 120

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL---TDALQ 200
           PHN+GAI+R+A A    GII  KR S S +  + K+++GA   +P  R+ NL    D L+
Sbjct: 121 PHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVPNLAAAVDDLK 180

Query: 201 KMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           K   W + T G       +D + P         I L++G+EG G+    +E    +  L 
Sbjct: 181 KQGIWIYGTDGAGQNYSGADLRGP---------IGLVVGSEGFGMGRLMKEKCDMLLSLP 231

Query: 256 MPGIIKALNVSNAAAVALY 274
           M G I +LN S AA + +Y
Sbjct: 232 MAGKITSLNASVAAGIFMY 250


>gi|254495332|ref|ZP_05108256.1| SpoU rRNA methylase [Polaribacter sp. MED152]
 gi|85819686|gb|EAQ40843.1| SpoU rRNA methylase [Polaribacter sp. MED152]
          Length = 248

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 10/190 (5%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHN 146
           TVP + ++++  K + HQG   + +P        LL  TL+A       ++LD ++D  N
Sbjct: 53  TVPVEKLNRL-SKNSNHQGAVAQISPIDFYDLETLLDDTLEA-EKVPFFLILDQLSDVRN 110

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAI+R+A     +GII  K  S   +A   K+++GA   +P  ++ ++ DAL  + +  
Sbjct: 111 FGAIIRTAECTGVNGIIIQKNGSAPVNAETIKTSAGAAFKMPICKVDHIKDALFILQASN 170

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            +T+  +  +   +     N  IA+I+G+E +G+ P   +     A L + G I++LNVS
Sbjct: 171 IKTVAATEKTDSSIYDVNFNQPIAIIMGSEHRGVNPSVLKMVDYKAKLPLSGNIESLNVS 230

Query: 267 NAAAVALYIT 276
            A  V LY T
Sbjct: 231 VACGVFLYET 240


>gi|239932361|ref|ZP_04689314.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291440728|ref|ZP_06580118.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291343623|gb|EFE70579.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 272

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 7/180 (3%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P PV TV P+  +++ G   VH+G   +++  PL + T D +R ++ +++++ VND  NI
Sbjct: 76  PAPVYTVTPELAERVTGYH-VHRGALASMQRKPLPA-TADLLRTARRVVIMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAGF 193

Query: 208 QTIGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             + L+ D K + L++    + D++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 194 TLLALTPDEKARSLDEAAPHRMDRVALMLGAEGDGLSTRALAAADEWVRIPMSHGVDSLN 253


>gi|167758883|ref|ZP_02431010.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
 gi|167663623|gb|EDS07753.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
          Length = 250

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 103 FLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 162

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++ +   G   +      ++  +  +    I LI+G EG+G+    +ET    A 
Sbjct: 163 NLAKTMESLKEKGLWFVCADMGGEEMYDLNLTG-PIGLIIGNEGEGVSRLVKETCDFTAR 221

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 222 IPMNGDIDSLNASVAAGVLAY 242


>gi|169830404|ref|YP_001716386.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637248|gb|ACA58754.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 251

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 7/230 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVG 106
            +YG + V  AL    R + ++L  + A  RL  +      P   PV+ V    +D++  
Sbjct: 12  VIYGRNPVREALRG-GRTLHKILVVRGADPRLFRELRELARPGRIPVQVVERPLLDRLTD 70

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             A HQG+A   +     T++ +  ++  L++VL+ + DP N+GAILR+A A   DG + 
Sbjct: 71  GGA-HQGVAATVSVKDFATVEELLGTENPLIVVLNAIQDPRNLGAILRTAEAAGVDGAVV 129

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             R +   +   AK+A+GA+E++P  R++N+   L++    G   +G   D         
Sbjct: 130 PSRRAAPLTPAAAKTAAGAVEYLPVARVTNIALTLREFKQKGLWVVGADPDGPVSYWDAD 189

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +AL++G E  GL    +    S+  + M G + +LN S AAA+ +Y
Sbjct: 190 LGGPLALVIGGEAGGLGRAVRAECDSLVRIPMSGRVGSLNASVAAALLIY 239


>gi|255282793|ref|ZP_05347348.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
           formatexigens DSM 14469]
 gi|255266567|gb|EET59772.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
           formatexigens DSM 14469]
          Length = 245

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 79/141 (56%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 99  FLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G   +    +     + ++K   I L++G+EG+G+    +E     A 
Sbjct: 159 NLAKTIEELKQKGIWFVCADMNGTPMYDLDLKG-PIGLVIGSEGEGVSRLVKEKCDFTAS 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 218 IPMKGDIDSLNASVAAGVMAY 238


>gi|296122015|ref|YP_003629793.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296014355|gb|ADG67594.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 262

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 2/142 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + LD + DPHN+GA+ R+A  F   GII T+  S   S      ++G LE IP+ +  
Sbjct: 118 IWLALDCLQDPHNVGAVFRAAAFFGVRGIIATRDRSAPLSGTAYDVSAGGLESIPFAQPP 177

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252
           NL  AL+     G   +G S  +++PL   IK D+  LI +G E  GLR  T E    + 
Sbjct: 178 NLARALELAKKSGVWVLGTSEHAQQPL-SSIKADRPWLIVIGNEEGGLRRLTLELCDEVC 236

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            +   G + +LNVS A  + LY
Sbjct: 237 TIPSQGAVGSLNVSVATGILLY 258


>gi|294055486|ref|YP_003549144.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614819|gb|ADE54974.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 188

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 71/141 (50%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++L+ V DPHN+GA LR+A       ++   + S   +  +   + G  + +P+++I 
Sbjct: 41  LILLLEGVQDPHNLGACLRTASGAGVTALLAPMKGSCGITHTVRDVSCGGADEVPFLKIK 100

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N +  L+K    G Q IG S    + L          +ILG+EG GLR  T +    +  
Sbjct: 101 NTSQLLRKFRDQGIQIIGTSDRGTEMLYDTDLTGPTCIILGSEGWGLRKVTGDLCDQLVS 160

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +  LNVS +A V LY
Sbjct: 161 IPMAGKVDCLNVSVSAGVCLY 181


>gi|189499560|ref|YP_001959030.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides BS1]
 gi|189495001|gb|ACE03549.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides BS1]
          Length = 247

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPL----LSPTLDAVRN-SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+    + +    L   L   RN S LL+VL  +NDPHN+GAI+R+A A + DG+I  
Sbjct: 71  HQGVCALISSVRYYQLEEILQHPRNTSPLLVVLPGLNDPHNVGAIIRTAEAVATDGVILV 130

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +      +A + K+++GA+ H    ++ +L   L+ +   GFQ I     ++K   +   
Sbjct: 131 EGKGSPVNAAVHKASAGAVSHSRLCKVKSLQACLKMLREEGFQIIAADMHAEKNYTEVDF 190

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A I+G E KGL         ++  + M G +++LNVS +A V LY
Sbjct: 191 RIPSAFIMGTEEKGLDALNLNEKDTLVRIPMAGCVESLNVSVSAGVLLY 239


>gi|226324507|ref|ZP_03800025.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
 gi|225206955|gb|EEG89309.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
          Length = 249

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD++ DPHN+GAI+R+A      G+I  K  +   +A +AK+++GAL + P  +++
Sbjct: 102 FLILLDNIEDPHNLGAIIRTANLAGAHGVIIPKHRAAGLTATVAKTSAGALNYTPVAKVT 161

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G   +    D        +K   I L++G EG+G+    +ET    A 
Sbjct: 162 NLVKTMEELKEKGLWFVCADMDGDVMYRVNLKG-PIGLVIGNEGEGVGRLVKETCDMTAA 220

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 221 IPMKGDIDSLNASVAAGVLAY 241


>gi|294155831|ref|YP_003560215.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291600376|gb|ADE19872.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 233

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 14/231 (6%)

Query: 49  LFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           L + G ++V  AL N  P +K+  L      L +   + N    FPV+ V     D++  
Sbjct: 4   LIMCGKNSVLDALQNNWPIQKVLLLHENNKHLFK---NVN----FPVEVVRRDKFDELTN 56

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +   HQG       +    L+++ N   +L++VLDH+ DPHN+GA++RSA A     II 
Sbjct: 57  EN--HQGFIALIKEINYDNLNSLINDNPKLVLVLDHIQDPHNLGAVIRSANAAGVKHIIL 114

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +  S   ++ + K +SG    I +IR+++++  +  + + GF     + D       +I
Sbjct: 115 PRDRSAEINSTVIKVSSGGFIGIKFIRVNSISATITWLKNNGFWVFSSALDKNSKKHNQI 174

Query: 225 KND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               K  L++G EG G+   T        ++   G +++LNVS A  + L+
Sbjct: 175 NYPYKSVLVVGNEGSGVSKSTLNVCDETIYIEQFGSVQSLNVSVATGILLF 225


>gi|290953042|ref|ZP_06557663.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313757|ref|ZP_06804333.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 209

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245
           L      D +A++ GAEG G+R +T+
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209


>gi|225574359|ref|ZP_03782969.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038415|gb|EEG48661.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 93/173 (53%), Gaps = 8/173 (4%)

Query: 109 AVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG +A+  A   S   D ++ ++       +++LD + DPHN+GAI+R+A      G
Sbjct: 64  GTHQGVIAVVAAYEYSTVEDILQKAKDKGEDPFILLLDGIEDPHNLGAIIRTANLAGAHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R +   +A +A++++GAL + P  +++NLT  ++ +   G   +    D +K  +
Sbjct: 124 VIIPRRRAVGLTATVARTSAGALNYTPVAKVANLTKTMEVLKKEGMWFVCADMDGQKMYQ 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++   I +++G EG+G+    +E    +A + M G I +LN S AA V  Y
Sbjct: 184 LNLRG-PIGVVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLSY 235


>gi|148683794|gb|EDL15741.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
          Length = 358

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 102/198 (51%), Gaps = 23/198 (11%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151
           Q +D + G + VHQG+ +E +PL     D   ++       QL +VL+ + DP N+GA++
Sbjct: 141 QKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQLWLVLEGLQDPRNLGAVM 199

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA     D +IT++R S   + V++K+++GA+E +      +L   LQ     G+  +G
Sbjct: 200 RSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLPGFLQAKAQQGWLVVG 259

Query: 212 --------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPK----TQETATSMAHLHM 256
                   +S  SK P+   ++   +    L+LG+EG GL  +     Q   T +   H+
Sbjct: 260 TVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQEVFASCQLLLTILPRRHL 319

Query: 257 PGIIKALNVSNAAAVALY 274
           P  +++LNVS A  + L+
Sbjct: 320 PPGLESLNVSVATGILLH 337


>gi|317472693|ref|ZP_07932008.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|316899870|gb|EFV21869.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 246

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DPHN+GAI+R+A      G+I  KR +   +  +AK+++GAL + P ++++
Sbjct: 98  FFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVT 157

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL++ ++++   G   +    D      Q +    I L++G EG G+    +E     A 
Sbjct: 158 NLSNTMEELKERGLWFVCADMDGDMMYRQNLTG-PIGLVIGNEGSGVSRLVKERCDYTAS 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 217 IPMNGDIDSLNASVAAGVLAY 237


>gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 244

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 6/184 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           +PV  V P+ + K+  + ++     +    +  P  +     + ++VLD V DP N+G I
Sbjct: 62  YPVYEVTPEILKKL--QSSISGTWIMAVCRM--PQYNTADYGERVIVLDDVQDPGNVGTI 117

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA++F  D ++ +       +  + +S  GAL H+P IR   + D LQ++   G + +
Sbjct: 118 IRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGALFHVPVIR-GEVVDMLQELKRKGIRIL 176

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             S  +  PL +   +++ AL+ G EG G+       A +  ++ M    ++LNV+ AA 
Sbjct: 177 ATSLRNATPLHEIAASERFALVFGNEGSGVSEDVLYLADTHVYIEMD-TFESLNVAVAAG 235

Query: 271 VALY 274
           + +Y
Sbjct: 236 ICMY 239


>gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
 gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
          Length = 280

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 97/188 (51%), Gaps = 5/188 (2%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           P+  +    I+K+ G       +     P   P  + +  S+ + VL+ + D +N+GA+ 
Sbjct: 88  PIFVLSDNQIEKLTGYRMTRGIICAMRRPQARPLEEILSTSKYIAVLEDLVDVNNVGAVF 147

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWGFQ 208
           RSA A + D +I T + + + S  + + + G + ++P+ R+   T   D ++K+ +  F 
Sbjct: 148 RSAAALNVDAVILTAKCADNLSRRVLRVSMGTVLNVPWTRLDEETTSLDLIEKLKAHSFT 207

Query: 209 TIGLS-SDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           T  L+ +DS  PL ++ +K  K AL  G+EG GL  KT E       + M   + +LNV+
Sbjct: 208 TCALALTDSAVPLNKDLVKGKKAALFFGSEGYGLDEKTIEACDITTIIPMSHQVDSLNVA 267

Query: 267 NAAAVALY 274
            ++AVA +
Sbjct: 268 ASSAVAFW 275


>gi|260589561|ref|ZP_05855474.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|331082988|ref|ZP_08332107.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540129|gb|EEX20698.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|330399725|gb|EGG79386.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 249

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 13/217 (5%)

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPL--- 121
           K+F L   ++   R        H   +K V  + +D++   GK   HQG+   TA     
Sbjct: 28  KLFVLEKCEDGPVRTILREAKKHDTMIKYVKKERLDQLSETGK---HQGVIAMTAAYNYA 84

Query: 122 -LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            +   L A R       L++LD++ DPHN+GAI+R+A      G+I  K  +   +A +A
Sbjct: 85  EVEDILAAAREKGEPPFLVLLDNIEDPHNLGAIIRTANLAGAHGVIIPKNRAVGLTATVA 144

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++++GAL + P  +++NL   ++ +   G   +       +  + ++K   I L++G EG
Sbjct: 145 RTSAGALNYTPVAKVTNLARTIENLKKEGIWFVCADMGGTQMYDLDLKG-AIGLVIGNEG 203

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+    +E    +A + M G I +LN S AA V  Y
Sbjct: 204 DGVSKLVREKCDFIASIPMQGNIDSLNASVAAGVLAY 240


>gi|283769306|ref|ZP_06342206.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
           W1219]
 gi|283104082|gb|EFC05465.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
           W1219]
          Length = 237

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 13/196 (6%)

Query: 94  KTVPPQTIDK----IVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVND 143
           K +P + +D+     + K   HQG+A +       +++ +  S       L+++LD + D
Sbjct: 39  KQIPVEILDRHKMTSLVKSDRHQGVAAQIRNYTIYSVEEIVTSIPKGKDGLIVMLDGIVD 98

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAILR+  A   DG+I  K  S   +A +AK + GA++ +    ++NL+  ++ + 
Sbjct: 99  PHNLGAILRTCDAVGADGVIFKKDRSVGLNATVAKVSVGAIQTVKCASVTNLSQTIEWLK 158

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G+  +G + + K    + +K D    L++G EGKG+     +      HL M G I +
Sbjct: 159 KRGYWVVGTAMEGKD--YRSLKYDYPTVLVIGNEGKGISSLVMKHCDYRVHLPMVGKISS 216

Query: 263 LNVSNAAAVALYITQN 278
           LN S +  + LY   N
Sbjct: 217 LNASVSTGILLYEIYN 232


>gi|74224181|dbj|BAE33706.1| unnamed protein product [Mus musculus]
          Length = 321

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 24/199 (12%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151
           Q +D + G + VHQG+ +E +PL     D   ++       QL +VL+ + DP N+GA++
Sbjct: 103 QKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADTSSGDDPQQLWLVLEGLQDPRNLGAVM 161

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK---------M 202
           RSA     D +IT++R S   + V++K+++GA+E +      +L   LQ           
Sbjct: 162 RSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPDLPGFLQAKAPAGGGSWW 221

Query: 203 HSWGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPK----TQETATSMAHLH 255
             WG     +S  SK P+    + + +    L+LG+EG GL  +     Q   T +   H
Sbjct: 222 AQWGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQEVFASCQLLLTILPRRH 281

Query: 256 MPGIIKALNVSNAAAVALY 274
           +P  +++LNVS A  + L+
Sbjct: 282 LPPGLESLNVSVATGILLH 300


>gi|224023845|ref|ZP_03642211.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
           18228]
 gi|224017067|gb|EEF75079.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
           18228]
          Length = 250

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 15/247 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103
           +N  ++GV  V  A+    ++I ++L  K+  + L  +  A L   F PV+ VP + I++
Sbjct: 4   KNEMIFGVRAVIEAIQ-AGKEIDKVLVKKDIQSDLSKELFAVLKDTFIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    +P+       + P L     + LL++LD V D  N GAI R+   
Sbjct: 63  ITKKN--HQGVIAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  +P  R +NLT+ ++ +   GF+ +  +   
Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTLPVCRENNLTNTIKFLKESGFKIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274
                +        +I+GAE  G+  +          + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYQGPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYEA 240

Query: 275 ITQNHFA 281
           + Q  FA
Sbjct: 241 VKQRGFA 247


>gi|149200224|ref|ZP_01877246.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
           HTCC2155]
 gi|149136666|gb|EDM25097.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
           HTCC2155]
          Length = 197

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 2/146 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIP 188
           + +  +++LD V DPHN+GA +R+A     D +I  K   +P    V++ S  GA  +  
Sbjct: 44  KKTPFVLILDGVQDPHNLGACIRTANGAGVDAVIIPKDNAAPITDTVMSVSCGGA-SNTA 102

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R+ N+   ++K+   G    G S  + + L        +AL++G+EGKG+R  T+E  
Sbjct: 103 IFRVVNIARTMEKLKKIGVWIAGTSDKADQDLYNSDLKGPVALVMGSEGKGMRRLTEEKC 162

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G +  LNVS A  V LY
Sbjct: 163 DFLLTIPMGGTVPCLNVSVATGVCLY 188


>gi|260061888|ref|YP_003194968.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
           HTCC2501]
 gi|88786021|gb|EAR17190.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
           HTCC2501]
          Length = 244

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 15/246 (6%)

Query: 47  ENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           E L ++G+  V  AL     P + + +   T N   +L  +A   H   +  VPP+   +
Sbjct: 3   EELHIFGIRAVLEALEAGKTPEKILVRKDLTGNLFRQLQ-EAAKKHNMSLTVVPPERFRR 61

Query: 104 IVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
              +   HQG+    +P        L+  TL A   + L ++LD V+D  N+GAI+R+A 
Sbjct: 62  FESRN--HQGVVAVLSPITYREHTALIDETL-ARDKAPLFLLLDGVSDVRNLGAIIRTAE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+      S   SA   K+++GA  ++P  R  +L D +  + + G + +  +  
Sbjct: 119 CAGVSGLFLPASGSAPVSADTIKTSAGAAFNLPIARSPHLKDVVYYLQASGVRLVAATEK 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L +      +ALI+G+E +G+ P   +     A L M G I++LNVS A  V L+ 
Sbjct: 179 AESTLYEADLTGPLALIMGSEDRGIHPSLLKLCDIQAQLPMQGSIESLNVSVACGVFLFE 238

Query: 276 TQNHFA 281
            Q   A
Sbjct: 239 AQRQRA 244


>gi|319640626|ref|ZP_07995343.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|317387747|gb|EFV68609.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 249

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 15/245 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDKIVG 106
            ++GV  V  A+    R+I ++L  K+  + L  +  A L +   PV+ VP + I++I  
Sbjct: 1   MIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITR 59

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     + L ++LD + D  N GAI R+      
Sbjct: 60  KN--HQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGA 117

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II   + S S +A   K+++GAL  +P  R  NLT+ ++ +   GF+ +  +      
Sbjct: 118 DAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKGDYD 177

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQ 277
             +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y  + Q
Sbjct: 178 YTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQ 237

Query: 278 NHFAK 282
             F +
Sbjct: 238 RGFTE 242


>gi|110597055|ref|ZP_01385344.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
           13031]
 gi|110341246|gb|EAT59711.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
           13031]
          Length = 248

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPLLSPTLDAV----RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+    + +   +LD V    RNS  LL+VL  ++DPHNIGAI+R+A A + D ++  
Sbjct: 72  HQGVCALISTVTYYSLDEVLASPRNSSPLLVVLQGLDDPHNIGAIIRTAEAVAADAVVLV 131

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +      +AV+ K+++GAL H+   ++ +L  AL+ +H    Q I    D++        
Sbjct: 132 EGKGSPVNAVVHKASAGALSHMRICKVKSLVRALEYLHEKDIQVIAADMDAELNYNDADM 191

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A++LG EG G+ P+  +    +  + M G +++LNVS  A V LY
Sbjct: 192 KRATAIVLGMEGSGIAPEALKFCDHVVRIPMAGCVESLNVSVTAGVLLY 240


>gi|330723348|gb|AEC45718.1| tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 225

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 15/230 (6%)

Query: 50  FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G +++  A+ N  P +KI+        L ++  + NL + + V  V    +DK+  K
Sbjct: 4   YICGKNSLLDAIKNNVPIKKIY--------LTKIVPNLNL-NTYQVHIVEKSFLDKL-AK 53

Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
              HQG   E   +    ++++   N + ++VLDH+ D HN+GAI+RSA A     II  
Sbjct: 54  GINHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILP 113

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI 224
           K      +  + + +SG    I +I +++L    +K+    F     + S + KPL+Q +
Sbjct: 114 KDNCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASALSKTAKPLDQIV 173

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            N   A++LG+E KG+       +  + ++ M G +++LNVS AA + L+
Sbjct: 174 FNQPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223


>gi|89255916|ref|YP_513278.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314398|ref|YP_763121.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156501905|ref|YP_001427969.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009182|ref|ZP_02274113.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367276|ref|ZP_04983303.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|89143747|emb|CAJ78949.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129297|gb|ABI82484.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253093|gb|EBA52187.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252508|gb|ABU61014.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 218

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245
           L      D +A++ GAEG G+R +T+
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209


>gi|153813242|ref|ZP_01965910.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
 gi|149830655|gb|EDM85746.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
          Length = 247

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 22/212 (10%)

Query: 92  PVKTVPPQ-----TIDKIVGKEAV--------HQGLALETAPLLSPTLDAV-------RN 131
           PV+T+  +     TI   V KE +        HQG+  + A     T+D +         
Sbjct: 34  PVRTIAREARKTDTIINYVSKERLDQLSETHAHQGVIAQVAAYDYSTVDEILARAEEKGE 93

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +  L++LD+V DPHN+GAI+R+A      G+I  KR +   ++ +AK+++GA+ + P  +
Sbjct: 94  APFLIILDNVEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAK 153

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++N+   ++++   G   +      +   + ++    + L++G EG+G+    +E     
Sbjct: 154 VTNIVRTIEELKEKGIWFVCADMGGETMYDLDLTG-PMGLVIGNEGEGVSRLVREACDFT 212

Query: 252 AHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
           A + M G I +LN S AA V  Y I +   AK
Sbjct: 213 ASIPMKGDIDSLNASVAAGVLAYEIVRQRLAK 244


>gi|294777185|ref|ZP_06742642.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
           PC510]
 gi|294449054|gb|EFG17597.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
           PC510]
          Length = 255

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 15/248 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103
           +N  ++GV  V  A+    R+I ++L  K+  + L  +    L +   PV+ VP + I++
Sbjct: 4   KNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFTCLKNTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +       L P L     + L ++LD + D  N GAI R+   
Sbjct: 63  ITRKN--HQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  +P  R  NLT+ ++ +   GF+ +  +   
Sbjct: 121 AGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274
                +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA 240

Query: 275 ITQNHFAK 282
           + Q  F +
Sbjct: 241 VKQRGFTE 248


>gi|295102322|emb|CBK99867.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
           L2-6]
          Length = 268

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 15/266 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + + M    ++ +   QP N   +YG + V+  L + S     LLA   A A   +   +
Sbjct: 2   EERNMPRRPRREKADDQPRNESLVYGKNPVTELLKSGSGVDTVLLAEGMAPAVAAYYTAM 61

Query: 88  PHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVL 138
                  VK V P  +  + G E+ HQG+A   + +   T++ +  +         L++ 
Sbjct: 62  AKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKEKGEPPFLVLS 120

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P  R++N+ + 
Sbjct: 121 DGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGET 180

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++   G        D    L +      IAL+LG+EG G+    ++    +  L M  
Sbjct: 181 IRRLKEQGVFVYCADMDGVS-LRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVSLDMTA 239

Query: 259 ---IIKALNVSNAAAVALYITQNHFA 281
               + + NVS AA + LY  Q+  A
Sbjct: 240 QGTGVDSFNVSVAAGIILYEIQSQRA 265


>gi|167762351|ref|ZP_02434478.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
           43183]
 gi|167699994|gb|EDS16573.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
           43183]
          Length = 246

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    + I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAVQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65

Query: 107 KEAVHQG-LALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG +A  +A     T D V        + L ++LD + D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   + S + +A   K+++GAL  +P  R  NL D LQ + S GF  +  +      
Sbjct: 124 DAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQFLKSSGFHIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE KG+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|160937869|ref|ZP_02085227.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439095|gb|EDP16849.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
           BAA-613]
          Length = 247

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 115/237 (48%), Gaps = 11/237 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A  +     K+F L   ++   R        +   +  VP + +D+I
Sbjct: 4   EELTIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTILREARKYDTIINYVPKERLDQI 63

Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG +A   A   +   D ++ ++       L++LD + DPHN+GAI+R+A   
Sbjct: 64  -SETGKHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GAL + P  +++NLT  ++ +   G   +      +
Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGE 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  +K   I L++G EG+G+    +E    +A + M G I +LN S AA V  Y
Sbjct: 183 LMYKMNLKG-SIGLVVGNEGEGVGKLVREHCDMVASIPMKGDIDSLNASVAAGVLAY 238


>gi|295135708|ref|YP_003586384.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294983723|gb|ADF54188.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 244

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 25/180 (13%)

Query: 111 HQGLALETAPL----LSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+  + +P+    L  T++ +   +     ++LD +ND  N GAI+R+A     D II
Sbjct: 67  HQGVVAKISPIAFKGLEETVEPILAKKEVPFFLLLDQINDVRNFGAIIRTAECCGVDAII 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--------- 214
             ++ +   +A   K+++GA+ +IP  +++++ DA+  + S G QT+  +          
Sbjct: 127 IPEKGAAPINADTVKTSAGAVFNIPICKVNHIKDAVFYLQSSGIQTVAATEKTDNLIYNI 186

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D KKP          A+I+G E KG+ P   +T    A L M G I +LNVS A    LY
Sbjct: 187 DFKKPT---------AIIMGNEAKGISPSILKTIDHKAKLPMHGEIASLNVSVACGAFLY 237


>gi|148377309|ref|YP_001256185.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
 gi|148291355|emb|CAL58738.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
          Length = 233

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 3/167 (1%)

Query: 111 HQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           HQG  L         +D ++  N + +++LDH++DPHN GAI+R+A A     II  K  
Sbjct: 60  HQGYLLFLKDFNYYEIDVIKKDNPKTVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDR 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND 227
           S   ++ + K +SG    +  I++SN+  +++K+  WGF     L  ++  P  +     
Sbjct: 120 STDVTSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNKVQYAG 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             AL++G E KG+            ++   G ++++NVS A  + L+
Sbjct: 180 NCALVVGNEEKGISKPVVNATDVKVYIPQFGTVQSMNVSVATGILLF 226


>gi|166031081|ref|ZP_02233910.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
           27755]
 gi|166028928|gb|EDR47685.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
           27755]
          Length = 252

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 5/143 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN+GAI+R+A      G+I  KR +   +A +AK+++GA+ + P  +++
Sbjct: 105 FLILLDDIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVT 164

Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           NLT  ++++   G  F    +  +S   L        I L++G EG+G+    +ET   +
Sbjct: 165 NLTKTMKELKEKGLWFVCADMGGESMYKLNL---TGPIGLVIGNEGEGVSRLVKETCDFV 221

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           A + M G I +LN S A  V  Y
Sbjct: 222 ASIPMKGDIDSLNASVATGVLAY 244


>gi|149173449|ref|ZP_01852079.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
 gi|148847631|gb|EDL61964.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
          Length = 251

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 75/140 (53%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD + DPHNIGAI R+A  F   GI+ TK  S   +A +   ASG +E +P+   +
Sbjct: 101 LWLALDCIQDPHNIGAIFRTAAFFGVRGIVLTKDRSAPINATVYDVASGGMEAVPFAVET 160

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL+ ++ +    G   +G S  +++ +    ++    +++G E KGLR  T E    +  
Sbjct: 161 NLSRSMTQAKETGVWIMGTSEHAEEDVSVYSQDRPWMVVIGNEEKGLRRLTLEQCDVVTR 220

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           L   GI+ +LN S AA + +
Sbjct: 221 LTPTGIVDSLNASVAAGIMI 240


>gi|253681905|ref|ZP_04862702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           D str. 1873]
 gi|253561617|gb|EES91069.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           D str. 1873]
          Length = 263

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 7/171 (4%)

Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG +A+ T        D ++ ++       +++LD + DPHN+G+I+R+A      GII
Sbjct: 85  HQGVIAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAEICGVHGII 144

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA E++   +++NL  A+  +   G    G     +    Q 
Sbjct: 145 IPKRRNVGITPTVYKTSAGAAEYMKVAKVANLNRAIDNIKEKGIWVYGADMSGESYCFQT 204

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +AL++G+EG+G+   T+E    +  + M G I +LN S AA + +Y
Sbjct: 205 NFKGAVALVIGSEGRGVSKLTKEKCDVLVKIPMVGNITSLNASVAAGIMMY 255


>gi|266623924|ref|ZP_06116859.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
           DSM 13479]
 gi|288864256|gb|EFC96554.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
           DSM 13479]
          Length = 250

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 78/141 (55%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            + +LD + DPHN+GAI+R+A      G+I  KR +   +AV+AK+++GAL + P  +++
Sbjct: 103 FIFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRASGLTAVVAKTSAGALNYTPVAKVT 162

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G   +    + +      +K   I L++G+EG G+    +E    +A 
Sbjct: 163 NLAATIEELKEKGLWFVCADMNGELMYRLNLKG-PIGLVIGSEGDGVGRLVREKCDMVAS 221

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 222 IPMKGDIDSLNASVAAGVLAY 242


>gi|224143649|ref|XP_002325029.1| predicted protein [Populus trichocarpa]
 gi|222866463|gb|EEF03594.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 10/158 (6%)

Query: 111 HQGLALETAPLLS---PTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQGL L+ +PL       LDAV        L + LD V DP N+GAI+RSA  F   G++
Sbjct: 349 HQGLVLDASPLEMVKIQELDAVLPDEEKGSLWVALDEVTDPQNLGAIIRSAYFFGASGVV 408

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222
              + S   S V++K+++G+LE +      N+   L      G++ +G S  SK   L +
Sbjct: 409 LCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVSSAENGWRVLGGSVSSKAVSLSE 468

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +      L+LG+EG GLRP  + + T +  + +PG I
Sbjct: 469 VLPGQPTILVLGSEGTGLRPLVERSCTQL--VRIPGNI 504


>gi|225568314|ref|ZP_03777339.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
           15053]
 gi|225162843|gb|EEG75462.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
           15053]
          Length = 250

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 77/141 (54%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            + +LD++ DPHN+GAI+R+A      G+I  KR +   +A +A++++GAL + P  +++
Sbjct: 102 FIFLLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRASGLTATVARTSAGALNYTPVAKVT 161

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G   +    D +      +    I L++G EG+G+    +ET    A 
Sbjct: 162 NLVKTMEELKEKGLWFVCADMDGESMYRLNLTG-PIGLVIGNEGEGVGRLVKETCDFAAG 220

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 221 IPMKGNIDSLNASVAAGVLAY 241


>gi|111021435|ref|YP_704407.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
 gi|110820965|gb|ABG96249.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
          Length = 248

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 8/185 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           VP   +D++     +HQG+AL+  P      D +       + + LL+ LD++ DP N+G
Sbjct: 56  VPRSDLDRL-SANGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLG 114

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+   S G Q
Sbjct: 115 AVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQ 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +     L++   +  + +++G+EGKGL    +E   ++  + M G +++LN S A
Sbjct: 175 VVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVA 234

Query: 269 AAVAL 273
           A V L
Sbjct: 235 AGVVL 239


>gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens B str. ATCC 3626]
 gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens ATCC 13124]
 gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens B str. ATCC 3626]
          Length = 289

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 99/190 (52%), Gaps = 10/190 (5%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145
           VK V  + +D ++ +   HQG+  +  P    T++ +      +N    +++LD + DPH
Sbjct: 93  VKEVDRKKLD-LMSETKAHQGVIAQITPFKYSTVEDILDLAKSKNEDPFIVILDELEDPH 151

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A      GII  KR +   +  + K++ GA+EH+   +++N+ +A++++ + 
Sbjct: 152 NLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTNINNAIEELKAN 211

Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                G   +  +   E   K     +I+G+EG+G+   T++    +  + M G I +LN
Sbjct: 212 NLWIYGADIAGEEYSYETNFKG-ACGIIIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLN 270

Query: 265 VSNAAAVALY 274
            S A  + +Y
Sbjct: 271 ASVAGGIMMY 280


>gi|167745715|ref|ZP_02417842.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
 gi|167655027|gb|EDR99156.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
          Length = 246

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DPHN+GAI+R+A      G+I  KR +   +  +AK+++GAL + P ++++
Sbjct: 98  FFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVT 157

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL+  ++++   G   +    D      Q +    I L++G EG G+    +E     A 
Sbjct: 158 NLSKTMEELKERGLWFVCADMDGDMMYRQNLTG-PIGLVIGNEGSGVSRLVKERCDYTAS 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 217 IPMNGDIDSLNASVAAGVLAY 237


>gi|305665147|ref|YP_003861434.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
 gi|88709899|gb|EAR02131.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
          Length = 255

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 11/233 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  V  A+N+     K+F     K  L R               VP + ++++    
Sbjct: 17  IYGIRAVIEAINSNETIDKVFVQKGLKGDLFRELEGLLRKKGIAAAYVPIEKLNRLSKNN 76

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+   T++       A  N+ L ++LD ++D  N GAI+R+A     DG
Sbjct: 77  --HQGVIANISPIAFYTIESLVEKVLASNNTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+ +   +A   K+++GA   +P  ++ ++ DA+  + + G      +  +   + 
Sbjct: 135 IIIPKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGISVTVATEKTNNTIY 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  A+++G+E +G+ P   + A  +A L + G I++LNVS A AV LY
Sbjct: 195 DVPFKEPCAIVMGSEDRGVSPSVIKAADQLAKLPLLGEIESLNVSVACAVFLY 247


>gi|237753039|ref|ZP_04583519.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375306|gb|EEO25397.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
          Length = 228

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 15/228 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID----KI 104
           + +YG   V   L   S KI Q+L  K      + D      F    VP   +D    + 
Sbjct: 1   MVVYGKRVVEYILTKHSDKIQQVLLAK------EIDKKQFRAFARLNVPLVRVDSKKAQS 54

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + +   HQG  LE APL+      ++    ++VL  ++D  NIGA+ R+A     DGI+ 
Sbjct: 55  LARGGNHQGYLLEIAPLVPLEFSTLKAMNFVLVLCGISDVGNIGALFRTAFVLGVDGIVI 114

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE- 223
                  +  VL +++SGA+  +P+  + N  D   ++   GF+  G    S K +E   
Sbjct: 115 CGLKDFKQEGVL-RASSGAMLDMPFCLVYNALDVANELKFAGFRLYG---ASLKGVESNG 170

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +   K AL LGAEG GL  K  +       +       +LNVS A A+
Sbjct: 171 VTQGKKALFLGAEGNGLSAKILKKMDINLTIAQKREFDSLNVSTAGAI 218


>gi|283795459|ref|ZP_06344612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
 gi|291077120|gb|EFE14484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
 gi|295091144|emb|CBK77251.1| rRNA methylase, putative, group 3 [Clostridium cf. saccharolyticum
           K10]
          Length = 247

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L +LD + DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 99  FLFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL+  ++++   G   +      +      +K   I L++G EG+G+    +E    +A 
Sbjct: 159 NLSATIEELKERGLWFVCADMGGESMYRLNLKG-PIGLVIGNEGEGVSRLVKEKCDMVAS 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238


>gi|291319976|ref|YP_003515234.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
 gi|290752305|emb|CBH40276.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
          Length = 233

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 3/167 (1%)

Query: 111 HQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           HQG  L         +D ++  N + +++LDH++DPHN GAI+R+A A     II  K  
Sbjct: 60  HQGYLLFLKDFNYYEIDVIKKDNPKNVLILDHIHDPHNFGAIIRTANAAGIKHIIIPKDR 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND 227
           S   ++ + K +SG    +  I++SN+  +++K+  WGF     L  ++  P  +     
Sbjct: 120 STDVTSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNKVQYTG 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             AL++G E KG+            ++   G ++++NVS A  + L+
Sbjct: 180 NCALVVGNEEKGVSKPVVNATDVKVYIPQFGTVQSMNVSVATGILLF 226


>gi|157736425|ref|YP_001489108.1| TrmH family tRNA methyltransferase [Arcobacter butzleri RM4018]
 gi|315635558|ref|ZP_07890824.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
 gi|157698279|gb|ABV66439.1| tRNA methyltransferase, TrmH family [Arcobacter butzleri RM4018]
 gi|315480316|gb|EFU70983.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
          Length = 229

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 5/167 (2%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG  L+ +      +  ++    ++VLD V D  NIGAI R+A +   DGII +   + 
Sbjct: 61  HQGFFLKLSQFDYAPIKELKAMNFILVLDGVTDVGNIGAIARTAYSLGIDGIIASNIKTI 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS---KKPLEQEIKND 227
           + S ++ ++++GAL  +P+       D   ++   GF  IG + D    KK  + E K+D
Sbjct: 121 NNSGIV-RTSAGALLDLPFCIHPRSADLASELIDAGFTLIGATMDGVDLKKYGKIE-KSD 178

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K+AL LG+EG+G+ PK  +       + M     +LNVS AA + +Y
Sbjct: 179 KVALFLGSEGEGISPKVAKKLDLKVSIKMEHEFDSLNVSVAAGILIY 225


>gi|212694905|ref|ZP_03303033.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
 gi|237727137|ref|ZP_04557618.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
 gi|212662465|gb|EEB23039.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
 gi|229433993|gb|EEO44070.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 255

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 15/248 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103
           +N  ++GV  V  A+    R+I ++L  K+  + L  +  A L +   PV+ VP + I++
Sbjct: 4   KNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +       L P L     + L ++LD + D  N GAI R+   
Sbjct: 63  ITRKN--HQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  +P  R  +LT+ ++ +   GF+ +  +   
Sbjct: 121 AGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274
                +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEA 240

Query: 275 ITQNHFAK 282
           + Q  F +
Sbjct: 241 VKQRGFTE 248


>gi|110598736|ref|ZP_01386998.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
 gi|110339639|gb|EAT58152.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
          Length = 266

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 116/254 (45%), Gaps = 16/254 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNN-PSRKIFQLLATKNALARLDWDA 85
           R Y ++    Q+ R     E LFL  G+ TV+    N P   +   L  +   +    D+
Sbjct: 15  RKYTRLHQKKQRER-----EGLFLAEGLRTVTELCRNLPDNDMLVALLIRETQSD---DS 66

Query: 86  NLPHPFPVKTVPPQTIDKI-VGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              H F  K       + + + +    QG+       P   P  +  + +  ++VLD V 
Sbjct: 67  GFAHAFSGKVFSISDKECLQLAQTTTSQGVFGVFRQQPDPEPFGEGKKGASFIVVLDDVQ 126

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+AV F  DG+I +       +A   +S++G++  IP+  + ++ D L ++
Sbjct: 127 DPGNVGTILRTAVWFGADGVICSGGTVDRYNAKTVRSSAGSIYAIPHYGVEHVADELNRL 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---I 259
            + G+  I  S + K   E   + +K  L++G E  G+  + Q  +  +  +   G    
Sbjct: 187 KALGYCIISASLEGKDFREFSFRPEKQVLVIGNEANGVSEQVQTLSDRLVRIPHAGKKAR 246

Query: 260 IKALNVSNAAAVAL 273
           +++LN S +AA+ +
Sbjct: 247 VESLNASVSAAILI 260


>gi|160881446|ref|YP_001560414.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160430112|gb|ABX43675.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           phytofermentans ISDg]
          Length = 248

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +E  HQG+    A      +D       A   +  L++LD + DPHN+GA+LR+A     
Sbjct: 65  EEGKHQGVIAYAAAYEYAEVDDLLEAAKAKGEAPFLIILDGIEDPHNLGAMLRTANQAGA 124

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII  KR +   +A +AK ++GA+ + P  +++NL   ++++   G   +      +  
Sbjct: 125 HGIIIPKRRAVGLTATVAKVSAGAINYTPVAKVTNLVATMEELKQKGLWFVCADMSGEVM 184

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQ 277
             Q +    I L++G+EG+G+    +E    +  + M G I +LN S A  V  Y  + Q
Sbjct: 185 YRQNLTG-PIGLVIGSEGEGVSRLVKEKCDFVTKIPMVGDIDSLNASVAMGVLTYEIVRQ 243

Query: 278 NHFAK 282
             FAK
Sbjct: 244 RSFAK 248


>gi|317051903|ref|YP_004113019.1| TrmH family RNA methyltransferase [Desulfurispirillum indicum S5]
 gi|316946987|gb|ADU66463.1| RNA methyltransferase, TrmH family, group 3 [Desulfurispirillum
           indicum S5]
          Length = 228

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 7/194 (3%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           H  P+K +    +D   G+   +QG+ A+  A      L  + ++  +++ D V DP N+
Sbjct: 38  HDIPIKILNRDKMDSQFGQH--NQGVGAIVGAIATQDPLTFLVDASCIVLADRVQDPGNL 95

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RSA AF  D +IT  + +P    V+ K+++G + H    R+ N    ++K    GF
Sbjct: 96  GAIIRSAAAFGADVVITEHQSAPISDTVI-KASAGNIYHTRVGRVVNAARYVEKAKENGF 154

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T+ L  + +     ++ + KI L++G EG GL+      A   A + M   +++LN S 
Sbjct: 155 WTVALDGEGESLFRLKL-DGKILLMVGNEGSGLKDILLRHADWRASIPMRPGVESLNASA 213

Query: 268 AAAVALY--ITQNH 279
           A A+ALY    QNH
Sbjct: 214 ATAIALYEIARQNH 227


>gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
 gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
 gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
 gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
          Length = 248

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++N   L++LD V DP N+G +LRSAVAF  DG+I         +  + +S  GA+  +P
Sbjct: 100 IKNQHRLLLLDRVQDPGNLGTLLRSAVAFGFDGVILGDGCVDLYNEKVIRSTQGAIFKLP 159

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   NL +A+  +   G +  G S  + +PL +  +  K+A ILG EG G+  +     
Sbjct: 160 ILN-QNLEEAVTSLKEQGVRIYGTSLQNGRPLNEIEETMKMAFILGNEGSGVSKELLSLT 218

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   I++LNVS A ++ +Y
Sbjct: 219 DGNIFIEMSENIESLNVSIAGSIIMY 244


>gi|18311406|ref|NP_563340.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens str. 13]
 gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens CPE str. F4969]
 gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens D str. JGS1721]
 gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str.
           13]
 gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens CPE str. F4969]
 gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens D str. JGS1721]
          Length = 289

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 99/190 (52%), Gaps = 10/190 (5%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145
           VK V  + +D ++ +   HQG+  +  P    T++ +      +N    +++LD + DPH
Sbjct: 93  VKEVDRKKLD-LMSETKAHQGVIAQITPFKYSTVEDILDLAKSKNEDPFIVILDELEDPH 151

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A      GII  KR +   +  + K++ GA+EH+   +++N+ +A++++ + 
Sbjct: 152 NLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTNINNAIEELKAN 211

Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                G   +  +   E   K     +I+G+EG+G+   T++    +  + M G I +LN
Sbjct: 212 NVWIYGADIAGEEYSYETNFKG-ACGIIIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLN 270

Query: 265 VSNAAAVALY 274
            S A  + +Y
Sbjct: 271 ASVAGGIMMY 280


>gi|160882253|ref|ZP_02063256.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
 gi|260173823|ref|ZP_05760235.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|299146570|ref|ZP_07039638.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_23]
 gi|315922086|ref|ZP_07918326.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112342|gb|EDO14087.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
 gi|298517061|gb|EFI40942.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_23]
 gi|313695961|gb|EFS32796.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 247

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  AL    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEALQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+         + A  L P L     +   ++LD V D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|291280542|ref|YP_003497377.1| RNA methyltransferase TrmH family [Deferribacter desulfuricans
           SSM1]
 gi|290755244|dbj|BAI81621.1| RNA methyltransferase, TrmH family [Deferribacter desulfuricans
           SSM1]
          Length = 223

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 11/195 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----MVLDHVNDPHNI 147
           P + V     DK   K A  Q +A E         D V    +L     VLD + DP N 
Sbjct: 35  PFEIVSKSEFDKKFSKHA--QSVAAEV-DFRYYDFDEVYEDIVLEENVAVLDKIQDPQNF 91

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+   F  +  I  K  S S +  + K+++G++ +   ++++N+   L K+   GF
Sbjct: 92  GAIVRAGHCFGINYFIIPKHGSSSVTPAVFKASAGSIIYSKIVKVTNIAKTLDKLLDAGF 151

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                  + KK L +     +  +ILG+EG+G+R    + A     + M G I +LNVS 
Sbjct: 152 FITAADINGKKELSEIKTTKRNCIILGSEGEGIRSNVLKRAHITFKIEMTGKIDSLNVSQ 211

Query: 268 AAAVALYITQNHFAK 282
           +AA+  Y    HF K
Sbjct: 212 SAAITFY----HFFK 222


>gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens E str. JGS1987]
 gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens NCTC 8239]
 gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens C str. JGS1495]
 gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens SM101]
 gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens C str. JGS1495]
 gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens E str. JGS1987]
 gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens NCTC 8239]
          Length = 289

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 99/190 (52%), Gaps = 10/190 (5%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPH 145
           VK V  + +D ++ +   HQG+  +  P    T++ +      +N    +++LD + DPH
Sbjct: 93  VKEVDRKKLD-LMSETKAHQGVIAQITPFKYSTVEDILDLAKSKNEDPFIVILDELEDPH 151

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A      GII  KR +   +  + K++ GA+EH+   +++N+ +A++++ + 
Sbjct: 152 NLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTNINNAIEELKAN 211

Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                G   +  +   E   K     +I+G+EG+G+   T++    +  + M G I +LN
Sbjct: 212 NVWIYGADIAGEEYSYETNFKG-ACGIIIGSEGRGMSNLTKKKCDKLVKIPMVGKINSLN 270

Query: 265 VSNAAAVALY 274
            S A  + +Y
Sbjct: 271 ASVAGGIMMY 280


>gi|254517454|ref|ZP_05129510.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226911203|gb|EEH96404.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 298

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 7/171 (4%)

Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG +AL T        D + +++       ++VLD + DPHN+G+I+R+A      GII
Sbjct: 119 HQGVIALVTPFKYCQIADMLNDAKEKGEDPFIIVLDEIEDPHNLGSIIRTAELCGVHGII 178

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   ++ + K + GA+EH+   +++N+  A+ ++   G    G     ++   Q 
Sbjct: 179 IPKRRNVGITSTVYKCSVGAIEHMKIAKVTNINSAIDELKESGLWVYGADIAGEEYSYQV 238

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             N   A+++G+EG+G+   T +    +  + M G I +LN S A  + +Y
Sbjct: 239 DFNGPCAMVIGSEGRGISKLTLKKCDKLVKIPMVGKINSLNASVAGGIMMY 289


>gi|239625543|ref|ZP_04668574.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519773|gb|EEQ59639.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 247

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 99  FLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NLT A++ +   G   +          +  +K   I L++G EG+G+    +E     A 
Sbjct: 159 NLTAAMEDLKKKGMWFVCADMGGDIMYKVNLKG-PIGLVVGNEGEGVGKLVREHCDMTAS 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238


>gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 262

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 78/142 (54%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VLD++ DP N+G ILR+A      GII +K      +  + +S  G++  +P++ + +
Sbjct: 113 LLVLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVED 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L +A+ K+ + G  T     D K   ++E    K A ++G EG GLR +  + A +   +
Sbjct: 173 LKEAIAKVKAHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKEIADLADTWIRI 232

Query: 255 HMPGIIKALNVSNAAAVALYIT 276
            M G +++LN + A +V ++ T
Sbjct: 233 PMQGQVESLNAAIATSVLMFET 254


>gi|157819051|ref|NP_001102302.1| rRNA methyltransferase 1, mitochondrial [Rattus norvegicus]
 gi|149053705|gb|EDM05522.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 320

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 28/251 (11%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP-----PQTIDKIV 105
           L+GV     AL    R + +LL            A L      + +P      Q +D + 
Sbjct: 50  LFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRRQKLDALC 109

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFS 158
           G + VHQG+ +E + L     D   ++       QL +VL+ + DP N+GA++RSA    
Sbjct: 110 GYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRSAYFLG 168

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG------- 211
            D +IT++R S   + V++K+++GA+E +      +L   LQ     G+  +G       
Sbjct: 169 VDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQAKAQQGWLVVGTVGCPGP 228

Query: 212 -LSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKAL 263
            +S  SK P+    + I +    L+LG EG GL      T     T +   H+P  +++L
Sbjct: 229 EISQSSKVPVTSCLEFIWDRPTLLVLGNEGSGLSQGVFATCQLLLTILPGRHLPPGLESL 288

Query: 264 NVSNAAAVALY 274
           NVS A  + L+
Sbjct: 289 NVSVATGILLH 299


>gi|262341137|ref|YP_003283992.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272474|gb|ACY40382.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 253

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 9/190 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDP 144
           P++TVP Q   ++  K   HQG+    +P+       L P       + LL++LD + D 
Sbjct: 52  PIQTVPKQKFYQLKNKN--HQGVFAILSPIETYQIKDLLPVFYEKGKNPLLVILDRITDV 109

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G+I+R++     D II  K+Y+    +   K++SGAL  +P  +  N+ + ++ + +
Sbjct: 110 RNFGSIIRTSACVGADAIIIPKKYTAMIGSDSIKTSSGALFKVPICQEKNIKNTIEFLMN 169

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +  +  S         +   ALILG E KG+ PK  E +   A +     I +LN
Sbjct: 170 SGLKIVSATEKSNIYWYNIDFSGPTALILGNEEKGISPKYLEISCEKAKIPAIKGISSLN 229

Query: 265 VSNAAAVALY 274
           VS A  V LY
Sbjct: 230 VSVACGVILY 239


>gi|328773133|gb|EGF83170.1| hypothetical protein BATDEDRAFT_85791 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 354

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 139/342 (40%), Gaps = 113/342 (33%)

Query: 41  RHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLA-------------------------- 73
           +H+++P+N+ +LYG   V  A+    RKI  LL                           
Sbjct: 12  QHSTRPKNVEYLYGASVVIPAMEFGVRKIKTLLVKEDQRFGGMKIRGNGEAILSSKILPK 71

Query: 74  ------TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALET-AP---- 120
                  +++ A LD+   L +    PVK VP   +D++ G    HQGL L T AP    
Sbjct: 72  ISSADMGQDSRALLDYAVALANQREIPVKEVPVSHLDRLAGNRP-HQGLVLATLAPKVTH 130

Query: 121 ---LLSPTLDA--------------------------VRNSQLLMVLDHVNDPHNIGAIL 151
              L +  LDA                           R     + LD + DP N+GAIL
Sbjct: 131 LHALGNCDLDANDVDFEKNVYEVDAGGDGILRLKTREDRKYPFWIALDQIVDPQNLGAIL 190

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F  DG++ T+R S   S + +K+++GA+E +P     NL   LQ+    G+Q +G
Sbjct: 191 RSAYYFGVDGVVVTERDSAPFSPISSKASAGAMEAMPLYSTVNLGKLLQESAINGWQILG 250

Query: 212 LSSDSKK----PL-------EQEIKND----------------KIALILGAEGKGLRPKT 244
            ++++KK    PL       + E+ ND                   L+LG EG G+R   
Sbjct: 251 TNTNAKKSDLIPLCHFKQRCDMEVSNDLDDLKTHTPLLRLDSAPTILVLGNEGHGMR--- 307

Query: 245 QETATSMAHLHM--------PGI----IKALNVSNAAAVALY 274
               +   H H+        P      I +LNVS AA + L+
Sbjct: 308 -TLVSKHCHHHLIITQDQFSPNFKKSRIDSLNVSVAAGILLH 348


>gi|325298424|ref|YP_004258341.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           salanitronis DSM 18170]
 gi|324317977|gb|ADY35868.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           salanitronis DSM 18170]
          Length = 246

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 15/246 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPF-PVKTVPPQTIDK 103
           +N  ++G+  V  A+    ++I ++L  K+  + L  +  A L   F PV+ VP + ID+
Sbjct: 4   KNEMIFGIRAVIEAIE-AGKEIDKVLIKKDMQSELAKELFAALKQSFIPVQRVPVERIDR 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    +P+       L P L     + L ++LD + D  N GAI R+   
Sbjct: 63  ITRKN--HQGVVAFISPITYQRTEDLVPFLFEQGKNPLFILLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  +P  R +N+   ++ +   GF+ I  +   
Sbjct: 121 AGVDAIIIPSKNSVSVNADAVKTSAGALLSLPVCRENNILSTIRFLKESGFKIIAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274
                +   +    +I+GAE  G+  +          + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYHSPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGTIESLNVSVAAGILIYKA 240

Query: 275 ITQNHF 280
           I Q  F
Sbjct: 241 IEQRGF 246


>gi|313904853|ref|ZP_07838225.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
           cellulosolvens 6]
 gi|313470286|gb|EFR65616.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
           cellulosolvens 6]
          Length = 305

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 78/141 (55%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L +LD + DPHN+GAI+R+A      G+I T+  +   +A +AK+++GA+ + P  +++
Sbjct: 159 FLFLLDGIEDPHNLGAIIRTANLAGAHGVIITRHRAVGLTATVAKASAGAINYTPVAKVT 218

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   + ++   G   +  + D  +  + ++K   I L++G EG+G+    +E     A 
Sbjct: 219 NLGATIDELKKKGMWFVCAAMDGTRMYDLDLKG-PIGLVIGNEGEGVSRLVREKCDFTAS 277

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 278 IPMKGDIDSLNASVAAGVLAY 298


>gi|226363791|ref|YP_002781573.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226242280|dbj|BAH52628.1| rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 322

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 102/185 (55%), Gaps = 8/185 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           VP   +D++     +HQG+AL+  P      D +       + + LL+ LD++ DP N+G
Sbjct: 130 VPRTDLDRL-SANGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLG 188

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+   S G Q
Sbjct: 189 AVVRSVAAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQ 248

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +     L++   +  + +++G+EGKGL    +E   ++  + M G +++LN S A
Sbjct: 249 VVGLDAGGDTTLDEFDGSGPVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVA 308

Query: 269 AAVAL 273
           A V L
Sbjct: 309 AGVVL 313


>gi|237718363|ref|ZP_04548844.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|229452296|gb|EEO58087.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
          Length = 247

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  AL    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEALQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+         + A  L P L     +   ++LD V D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPVRGSVSVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|119775658|ref|YP_928398.1| putative methyltransferase [Shewanella amazonensis SB2B]
 gi|119768158|gb|ABM00729.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B]
          Length = 333

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 1/144 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           ++   L+ LD V +PHN+GAI+RS   F   GI+ T+     +S   A++A G +EH+  
Sbjct: 183 KSRDCLLALDGVGNPHNLGAIMRSCAHFGVAGIVMTE-AGLLQSGAAARTAEGGMEHVEG 241

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           IR   LTDALQ     G+  I  SS   + L +     ++ ++ G E  G+       A 
Sbjct: 242 IRCDRLTDALQLCRDAGYSIITTSSHGGESLYRSKLPARVVVVFGEEMDGVSKAVASRAD 301

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               +   G++++LNVS AA++ L
Sbjct: 302 IGVQIPGTGLVESLNVSVAASLIL 325


>gi|255327493|ref|ZP_05368560.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
 gi|255295387|gb|EET74737.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
          Length = 292

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 4/172 (2%)

Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           +H+G LA    P   P    ++ +  + +L+ + D  N+GAI RSA A + D ++ T R 
Sbjct: 118 LHRGALAAMARPAPQPLEQLLQGASRVAILEDIVDHTNVGAIFRSAAALNVDAVLVTPRC 177

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---K 225
           +        + + G +  +P+ R+ +    LQ +H  GF++  L+ +      +E+   +
Sbjct: 178 ADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGFKSAALALEEDSLTLEELSARR 237

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++K+ALILG EG GL P+T         + M   + +LNV+ A+AVA + T+
Sbjct: 238 DEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLNVAAASAVAFWETR 289


>gi|146298170|ref|YP_001192761.1| RNA methyltransferase [Flavobacterium johnsoniae UW101]
 gi|146152588|gb|ABQ03442.1| RNA methyltransferase, TrmH family, group 3 [Flavobacterium
           johnsoniae UW101]
          Length = 244

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG     +P+       L  +  A  +  L ++LD ++D  N GAI+R+A     +GII
Sbjct: 67  HQGAVATISPIGFIDIEHLVESTIASGSKPLFLILDQISDARNFGAIIRTAECTGVNGII 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +    K+++GA+ ++P  ++ ++ DA+  +   G +T+  +  + + +   
Sbjct: 127 VQKAGSAPVNGDTVKTSAGAVFNVPICKVEHIKDAIFYLQGSGIKTVAATEKTDQNIYDL 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             N+ +A+I+G+E +G+ P   +     A L M G I +LNVS A    LY
Sbjct: 187 SLNEPLAIIMGSEDRGINPSVLKIVDEKAKLPMFGSIGSLNVSVACGAFLY 237


>gi|319949870|ref|ZP_08023879.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319436460|gb|EFV91571.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 278

 Score = 82.0 bits (201), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 4/180 (2%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + +++G  +    LA    P      + V  ++ L+VL+ VNDP N+GAI R+  A  
Sbjct: 93  DVLSEVIGFRSSRDILAAADRPGPLAVDEVVDGARTLVVLEGVNDPENLGAIFRNCAALG 152

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKMHSWGFQTIGLSS 214
            DG++            + + + G +  +P+  +    +    +L  +   GF+TI L+ 
Sbjct: 153 VDGVLFGAATGDPLYRRVVRVSMGHVLRLPFAHLPGTPTTWQRSLDDLRERGFRTIALTP 212

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ PL + +  +K+A +LGAEG GL           A + M     +LNV+ AAAVA Y
Sbjct: 213 AAEAPLSRAVDAEKVAFVLGAEGPGLTEHAMRACDVRAAIPMTDGTDSLNVATAAAVAFY 272


>gi|86143959|ref|ZP_01062327.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85829666|gb|EAQ48129.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 245

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG     +P+       T +AV  +    L ++LD + D  N GAI+R+AV    D II
Sbjct: 67  HQGAIATISPIQFAEFEATAEAVLAASKPGLFLLLDQLTDVRNFGAIIRTAVCTGVDAII 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K      +    K+++GA+ +IP  ++ ++ DAL  +   G Q +  +  ++  +   
Sbjct: 127 IPKSGGAPVTDDTVKTSAGAIFNIPICKVDHIKDALFYLQGSGVQVVAATEKTEDSIYDL 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 AL++G+EGKG+ P   +     A L M G I +LNVS A    LY
Sbjct: 187 DYTTPTALVMGSEGKGVTPGVLKLVDHKAKLPMAGTISSLNVSVACGAFLY 237


>gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           stomatis DSM 17678]
          Length = 244

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+   T+      LD +             ++LD + DPHN+G+I+R+A A     +I
Sbjct: 65  HQGVIAITSDYRYYDLDEILEIPKERGEDPFFIILDGITDPHNLGSIIRTADAVGAHAVI 124

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR S   + ++AK+++GA+E++P  +++N+ + ++ +   G     +  D     +Q 
Sbjct: 125 IPKRRSVQITPIVAKASAGAVEYLPVCKVTNIVNTIKTLKENGLWIAAVDMDGHTFYQQN 184

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    + L++G+EG+G+    ++       + M G + +LN S A  + LY
Sbjct: 185 L-GGPLGLVVGSEGEGISRLVKQNCDFTVSMPMSGNVTSLNASVAGGILLY 234


>gi|225850140|ref|YP_002730374.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
           EX-H1]
 gi|225646622|gb|ACO04808.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
           EX-H1]
          Length = 242

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 100/194 (51%), Gaps = 8/194 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNI 147
           ++ VP + I++  G +   QG+    +P+     DA     +  +   ++LDH+ DP N+
Sbjct: 49  IQRVPRKKIEETAGTKKT-QGVVALLSPVSYWDPDALIEHIIEKNGFGVILDHITDPQNV 107

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A      GII  +  S   + V+ K+++GA+ ++P  ++ N+   + K    G 
Sbjct: 108 GNIIRTAEVLGSSGIIVPRERSSPINEVVVKASTGAVFYLPIAKVGNIRQFIDKFKKRGG 167

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             I +     KP+ +        ++LG+EGKG+     E +  +  + M G I +LNVS 
Sbjct: 168 WVISVEKGG-KPIHKVSFPFPALIVLGSEGKGVSKTVLENSDMIVSIPMFGKITSLNVSA 226

Query: 268 AAAVALY-ITQNHF 280
           AAA++L+ +++  F
Sbjct: 227 AAAISLWEVSKQKF 240


>gi|154485051|ref|ZP_02027499.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
           27560]
 gi|149734004|gb|EDM50123.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
           27560]
          Length = 247

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 13/195 (6%)

Query: 89  HPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLD 139
           H   +  V  + +D++   GK   HQG+    A     T+D + +       S  +++LD
Sbjct: 48  HDTVINYVKKERLDQMSETGK---HQGVIGYLAAYEYATVDEILDKAREKGESPFVILLD 104

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+GAI+R+A      G+I  K  +   +A +AK+++GAL + P  +++N++  +
Sbjct: 105 DIEDPHNLGAIIRTANLAGAHGVIIPKHRASGLTATVAKTSAGALNYTPVAKVTNISKTI 164

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +++   G   +          + ++K   I L++G EGKG+    +E    +A + M G 
Sbjct: 165 EELKKEGMWFVCADMGGTTMYDLDLKG-SIGLVIGNEGKGVSRLVKEKCDFVASIPMFGD 223

Query: 260 IKALNVSNAAAVALY 274
           I +LN S A  V  Y
Sbjct: 224 IDSLNASVATGVLAY 238


>gi|124006094|ref|ZP_01690930.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
           ATCC 23134]
 gi|123988271|gb|EAY27924.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
           ATCC 23134]
          Length = 246

 Score = 82.0 bits (201), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 113/237 (47%), Gaps = 15/237 (6%)

Query: 50  FLYGVHTVSAALN--NPSRKIF---QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           F++GV +V+  +N   P  K+F   +L      +A +  +A      PV  VP   +++I
Sbjct: 5   FVFGVQSVTETINAGKPIDKLFIQRELGRNSPKVAYILEEAK-KREVPVAKVPLDKLNRI 63

Query: 105 VGKEAVHQGL-----ALETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             K   HQG+     A+   PL  + P L     + L+++LD + D  N GAI R+A   
Sbjct: 64  TRKN--HQGIIAFISAVHYQPLSNIIPQLYEEGKTPLVLILDRLTDVRNFGAIARTAECA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               I+   R S   S+   K++SGAL ++P  R +NL   ++ +   G Q +  +  + 
Sbjct: 122 GIHAIVIPSRGSAQVSSDAMKTSSGALNYLPVCREANLEKTIEFLQESGLQIVACTEKTS 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +         A+++G+E  G+       A  +A + + G I +LNVS A AV +Y
Sbjct: 182 ETIYAPDYTVPTAIVMGSEEDGISQALIRKADHLAKIPLQGEIGSLNVSVATAVIVY 238


>gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
           15176]
 gi|282569778|gb|EFB75313.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
           15176]
          Length = 257

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 14/211 (6%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRN 131
           AT+ ALA+    A+L +P PV    P   +K+ G ++      L   P   P L D+ R 
Sbjct: 55  ATEAALAKTPALASL-NPMPVA---PHVAEKLAGTKSSQGVFVLFETPQTDPALLDSARR 110

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              ++ L+ V DP N+G +LRSA AF  D ++     +   S    +S+ GA   +P + 
Sbjct: 111 ---ILALEGVQDPGNVGTLLRSAAAFGFDAVVLGPGCAAPFSPKTLRSSMGAAGRLPVVH 167

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETAT 249
             NL   L ++   G   +  +    +PL++E ++    + +++G+EG+GL  +T +   
Sbjct: 168 TENLPGTLHRLRERGVTCLAAALYHSRPLDEEGRDFPAGVCVVIGSEGQGLTDETVQACD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   + M   +++LN   A +V L+    HF
Sbjct: 228 AAVRIPMTDRVESLNAGVAGSVLLW----HF 254


>gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 262

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 77/142 (54%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VLD++ DP N+G ILR+A      GII +K      +  + +S  G++  +P++ + +
Sbjct: 113 LLVLDNLQDPGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVED 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L +A+ K+ + G  T     D K   ++E    K A ++G EG GLR    + A +   +
Sbjct: 173 LKEAIAKVKAHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKDIADLADTWIRI 232

Query: 255 HMPGIIKALNVSNAAAVALYIT 276
            M G +++LN + A +V ++ T
Sbjct: 233 PMQGQVESLNAAIATSVLMFET 254


>gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4]
          Length = 247

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 20/250 (8%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93
           +  N+K R  +      + G H +  AL      + +LL  ++      WD N+P     
Sbjct: 3   EVINKKERIKTN--TFMIEGFHLIEEALK-VDGVVEELLVVEDITLPKSWDVNVPM---- 55

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            T+  + I+K +      QG+       L+  ++    + LL  LD V DP NIG ++R+
Sbjct: 56  -TLLKRGIEKELTDTEQPQGV-FAICRQLNQNVELEGTAYLL--LDGVQDPGNIGTMIRT 111

Query: 154 AVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           A A   DG+I    T   Y+P     + +SA G+  H+P +   NL + +Q++H  GF  
Sbjct: 112 ADAAGFDGVIMGEGTVDPYNPK----VLRSAQGSHFHLPIVN-KNLVEVVQELHDNGFDV 166

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G S  + +   + +   K ALI+G EG G++       T   ++ + G  ++LNV+ AA
Sbjct: 167 FGTSLQNGEDYREVLFPAKFALIMGNEGNGMQETLLHATTKNLYIPIFGKSESLNVAVAA 226

Query: 270 AVALYITQNH 279
            V +Y  Q  
Sbjct: 227 GVLMYWGQQQ 236


>gi|283458109|ref|YP_003362724.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134139|dbj|BAI64904.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 292

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 99/194 (51%), Gaps = 6/194 (3%)

Query: 89  HP-FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           HP  P      + ++++ G   +H+G LA    P   P    ++ +  + +L+ + D  N
Sbjct: 97  HPDTPAYVGSEEQLEQVTGFH-LHRGALAAMARPEPQPLEQLLQGASRVAILEDIVDHTN 155

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RSA A + D ++ T R +        + + G +  +P+ R+ +    LQ +H  G
Sbjct: 156 VGAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELG 215

Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F++  L+ +      +E+   +++K+ALILG EG GL P+T         + M   + +L
Sbjct: 216 FKSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSL 275

Query: 264 NVSNAAAVALYITQ 277
           NV+ A+AVA + T+
Sbjct: 276 NVAAASAVAFWETR 289


>gi|254830028|ref|ZP_05234683.1| rRNA methylase [Listeria monocytogenes 10403S]
          Length = 252

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  AL      + +LL +       +W  + 
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEWLKDD 67

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F + T     I + + ++ V   +A        P +  +   +LL+V D V DP N+
Sbjct: 68  YDVFEISTEISHLISETMTEQGVFAVVATS-----EPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  K  +   +  + +S  G+  HIP I+ +NL D +  +   G 
Sbjct: 122 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWIANLEEEGV 180

Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG +  D  K L    K D +AL++G EG G+ P+ Q+  +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|313683424|ref|YP_004061162.1| RNA methyltransferase, trmh family, group 3 [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156284|gb|ADR34962.1| RNA methyltransferase, TrmH family, group 3 [Sulfuricurvum kujiense
           DSM 16994]
          Length = 225

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 10/228 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   V  A+     +I ++L     L + ++ + +   F +K +P +    +V K 
Sbjct: 1   MIIYGKQPVYYAIERHRERI-KVLYLAKELDKKEYSSLMKMGFEIKRIPEKAAQSMV-KG 58

Query: 109 AVHQGLALE---TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
             HQG   E     P  SP L   +    ++VL  + D  NIG+++RSA A     ++ +
Sbjct: 59  GNHQGFIAEISQVVPYASPFL---KKCDFIVVLSSITDMGNIGSLIRSAYALGVQALVIS 115

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
               P+  A++ +++SGA   +P + I N+ D L ++   GFQ  G   D     E    
Sbjct: 116 GIKDPNLEAMI-RTSSGAALDLPLVIIHNIHDVLHELKQSGFQIYGAVMDGVDVREASFA 174

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             ++ L+LG EG+GL  + Q++      + M     +LNV  A A+ +
Sbjct: 175 AKRV-LVLGNEGEGLSGRVQKSLDVGISIPMAHDFDSLNVGVAGAILM 221


>gi|225387934|ref|ZP_03757698.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
           DSM 15981]
 gi|225045977|gb|EEG56223.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
           DSM 15981]
          Length = 246

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 99  FLILLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NLT  ++ +   G   +      +      +K   I L++G EG+G+    +E    +A 
Sbjct: 159 NLTATMEDLKKKGMWFVCADMGGELMYRLNLKG-PIGLVIGNEGEGVGKLVKEHCDMVAS 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238


>gi|319901728|ref|YP_004161456.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
           P 36-108]
 gi|319416759|gb|ADV43870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
           P 36-108]
          Length = 246

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I+++  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRMTR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L+P L     + L ++LD + D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFVSAVTYQKTEDLTPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   + S S +A   K+++GAL  +P  R  NL + LQ + + GF  +  +      
Sbjct: 124 DAVIIPAKNSVSVNADAVKTSAGALHTLPVCREQNLKETLQFLKNSGFHIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE KG+             + M G I++LNVS AA V +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGVLIY 238


>gi|260437951|ref|ZP_05791767.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
           DSM 2876]
 gi|292809702|gb|EFF68907.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
           DSM 2876]
          Length = 245

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 13/191 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPH 145
           ++ V  + +D++  K   HQG+    A      +   L+A R       + +LD + DPH
Sbjct: 52  IRYVDREILDRL-SKTGHHQGVVANAAAYDYAEVEDILNAAREKGEPPFVFILDGIEDPH 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++NL+  ++++   
Sbjct: 111 NLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLSATIEELKKE 170

Query: 206 G--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G  F    +  ++   L        I L++G EG+G+    +E    +A + M G I +L
Sbjct: 171 GLWFVCADMGGETMYNLNL---TGPIGLVIGNEGEGVSRLVKEKCDYVASIPMKGNIDSL 227

Query: 264 NVSNAAAVALY 274
           N S AA V  Y
Sbjct: 228 NASVAAGVLAY 238


>gi|120437187|ref|YP_862873.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117579337|emb|CAL67806.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 245

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 12/238 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHP-FPVKTVPPQTIDK 103
           E   ++G+ TV  A+++  + I ++   K+    L  + + NL    + +  VP + ++K
Sbjct: 3   ETTRIFGIRTVIEAIDS-KKDIEKVFIQKDLSGPLFKELNRNLKEGNYNISYVPVEKLNK 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-VRNSQ------LLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG+    +P+   +L+  V +SQ      L ++LD + D  N GAI+R+A  
Sbjct: 62  L-SKNGNHQGVVANISPIGFVSLEKLVEDSQKSSTTPLFVLLDGITDVRNFGAIIRTAEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  ++ S   +A   K+++GA+ +IP  +++++ DA+  + ++  + I  +  +
Sbjct: 121 CGVTGIIIQEKGSAPINADTVKTSAGAVFNIPICKVNHIKDAVFHLQTYDIKLIAATEKT 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +        IA+I+G E KG+     ++    A L M G I +LNVS A    LY
Sbjct: 181 DDVIFDIDLKQPIAIIMGDEAKGISNSILKSVDYKAKLPMLGSIASLNVSVACGAFLY 238


>gi|328943536|ref|ZP_08241001.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327491505|gb|EGF23279.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 372

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 76/145 (52%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++LDHV D  N GAI+RSA       +I       S      K+++GA+ H+P 
Sbjct: 218 KQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPI 277

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +++ NL  A+ ++   GF  IG S  +++ +       K+ LI+G+E  G+    Q+   
Sbjct: 278 VQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFTGKVCLIMGSEENGISSLVQKKCD 337

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  L   G I++LNV+ AA V  Y
Sbjct: 338 FICKLPQRGRIESLNVAQAATVMCY 362


>gi|198274689|ref|ZP_03207221.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
 gi|198272136|gb|EDY96405.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
          Length = 249

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 15/248 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDK 103
           +N  ++GV  V  A+    ++I ++L  K+  + L  +  A L   F PV+ VP + I++
Sbjct: 4   KNEMIFGVRAVIEAIQ-AGKEIDKVLIKKDIQSDLSKELFAVLKDTFIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    +P+       + P L     + LL++LD + D  N GAI R+   
Sbjct: 63  ITKKN--HQGVVAFISPITYQRTEDIVPFLFEQGKNPLLILLDGLTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   + S S +A   K+++GAL  IP  R +NLT+ ++ +   GF+ +  +   
Sbjct: 121 AGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-- 274
                +        +I+GAE  G+             + + G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYQGPTCIIMGAEDTGVPYDHLALCDEWIKIPLFGNIESLNVSVAAGILIYEA 240

Query: 275 ITQNHFAK 282
           + Q  F +
Sbjct: 241 VKQRGFGE 248


>gi|229817686|ref|ZP_04447968.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
           20098]
 gi|229785475|gb|EEP21589.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
           20098]
          Length = 290

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 30/223 (13%)

Query: 78  LARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNS 132
            AR+D  W  ++P    V    P+ + ++ G   +H+G   A+   PL  P+++ V R +
Sbjct: 71  FARIDEQWGPDIP----VYVASPEQLKRLTGYR-LHRGALSAMRRWPL--PSVEEVCRGA 123

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             + V++++ DP N+GA++RSA A   D ++ T           A+ + G +  +P+ RI
Sbjct: 124 HRVAVMENIVDPTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRI 183

Query: 193 SNLTD------ALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILG 234
                       L+++HS GF T+ ++  D    L++  +            DK+ALI G
Sbjct: 184 DGDDKHYWPFKGLEELHSLGFTTVAMALEDDSISLDELTRRLNSSASDPQHIDKLALIFG 243

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            EG GL   T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 244 TEGDGLNRHTIARADLTVKIPMSHDVDSLNVAASSAVAFYATR 286


>gi|210623156|ref|ZP_03293610.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
 gi|210153789|gb|EEA84795.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
          Length = 244

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 79/141 (56%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DPHN+G+I+R+A A     ++  KR S   + V+AK+++GA+E++P  +++
Sbjct: 95  FIIILDEITDPHNLGSIIRTADAVGAHAVVIPKRRSVDITPVVAKASAGAVEYVPVCKVT 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + ++ +   G        D     +Q++    + L++G+EG G+    ++    +  
Sbjct: 155 NIVNTIKMLKEEGLWIAAADMDGGVFYKQDLTG-PLGLVVGSEGFGISRLVKQNCDFVVS 213

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LN S A  + LY
Sbjct: 214 MPMVGNVTSLNASVAGGILLY 234


>gi|237710747|ref|ZP_04541228.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|265750421|ref|ZP_06086484.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_33FAA]
 gi|229455469|gb|EEO61190.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|263237317|gb|EEZ22767.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_33FAA]
          Length = 249

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 15/245 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDKIVG 106
            ++GV  V  A+    R+I ++L  K+  + L  +  A L +   PV+ VP + I++I  
Sbjct: 1   MIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITR 59

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     + L ++LD + D  N GAI R+      
Sbjct: 60  KN--HQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGA 117

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II   + S S +A   K+++GAL  +P  R  +LT+ ++ +   GF+ +  +      
Sbjct: 118 DAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEKGDYD 177

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQ 277
             +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y  + Q
Sbjct: 178 YTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQ 237

Query: 278 NHFAK 282
             F +
Sbjct: 238 RGFTE 242


>gi|308234254|ref|ZP_07664991.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae DSM
           15829]
          Length = 367

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 76/145 (52%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++LDHV D  N GAI+RSA       +I       S      K+++GA+ H+P 
Sbjct: 213 KQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANARCASVGVGAYKTSAGAVLHMPI 272

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +++ NL  A+ ++   GF  IG S  +++ +       K+ LI+G+E  G+    Q+   
Sbjct: 273 VQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFTGKVCLIMGSEENGISSLVQKKCD 332

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  L   G I++LNV+ AA V  Y
Sbjct: 333 FICKLPQRGRIESLNVAQAATVMCY 357


>gi|193216530|ref|YP_001999772.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
 gi|193001853|gb|ACF07068.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
          Length = 229

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 4/185 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAI 150
           ++ +  Q ++++V K   HQG   E        L  +   +  L+++LDH+ DPHN GAI
Sbjct: 40  IEYLSIQEMNQLV-KNGNHQGYIAEIYNYQYYDLGTIFKDKPNLVLMLDHIQDPHNFGAI 98

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A  F    II  K  +   +  + K +SGA   I  IR+ +L D L+++   GF   
Sbjct: 99  IRNANGFGIKHIIIPKNRACEVTPTVLKISSGAFTEIKIIRVGSLFDTLKELQKNGFWIY 158

Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             + D K     + K      LI+G E  G+     + + ++ ++   G +++LNV++A 
Sbjct: 159 SSTLDDKATKLHKTKFATPTCLIVGNEESGVSHTLIKHSDALVYIEQKGTVQSLNVASAT 218

Query: 270 AVALY 274
           AV LY
Sbjct: 219 AVLLY 223


>gi|331268394|ref|YP_004394886.1| TrmH family RNA methyltransferase [Clostridium botulinum BKT015925]
 gi|329124944|gb|AEB74889.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           BKT015925]
          Length = 263

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 7/171 (4%)

Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG +A+ T        D ++ ++       +++LD + DPHN+G+I+R+A      GII
Sbjct: 85  HQGVMAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAEICGVHGII 144

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA E++   +++NL  ++  +   G    G     +    Q 
Sbjct: 145 IPKRRNVGITPTVYKTSAGATEYMKVAKVANLNRSIDDIKEKGIWVYGADMAGESYCFQT 204

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +AL++G+EG+G+   T+E    +  + M G I +LN S AA + +Y
Sbjct: 205 NFKGAVALVIGSEGRGISKLTKEKCDVLVKVPMVGNITSLNASVAAGIMMY 255


>gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Callithrix
           jacchus]
          Length = 350

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 36/256 (14%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQT 100
            L+G+     AL    R + +LL           +  + RL    ++P   P +    Q 
Sbjct: 51  LLFGLSPCLLALRAARRYVARLLLQAGKAGLQGERAEVLRLAEARDIPVLRPRR----QK 106

Query: 101 IDKIVGKEAVHQGLALETAPLLS-PTLDAVRNS------QLLMVLDHVNDPHNIGAILRS 153
           +D +  +  VHQG+ +E +PL   P ++A   S      QL +VLD + DP N GA+LR 
Sbjct: 107 LDAMC-RYQVHQGVCMEVSPLRPLPWIEAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRC 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-- 211
           A     D IIT+++ S   + V++K+++GA+E +      +LT  LQ     G+   G  
Sbjct: 166 AHFLGVDKIITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTV 225

Query: 212 ------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPG 258
                 +   SK P+   ++   +    L+LG EG GL  + Q +     T +    +P 
Sbjct: 226 GCPGPKVPQSSKIPITSSLEFLWDQPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPP 285

Query: 259 IIKALNVSNAAAVALY 274
             ++LNVS  A + L+
Sbjct: 286 GFESLNVSVVAGILLH 301


>gi|296138340|ref|YP_003645583.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
           paurometabola DSM 20162]
 gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
           paurometabola DSM 20162]
          Length = 324

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 9/175 (5%)

Query: 107 KEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +  +HQG+AL+  P        LL    D    + +++ LD++ DP N+GA++RSA AF 
Sbjct: 140 ENGLHQGIALQIPPYSYAHPEDLLRRAADRG-EAPMIVALDNITDPRNLGAVIRSAAAFG 198

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++   R S + +AV  ++++GA   +P  +  NL   L    + G Q +GL +    
Sbjct: 199 GHGVVIPSRRSAAITAVTWRTSAGAAARLPVAQAPNLNRTLADYAAAGLQIVGLDAGGDV 258

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L+    +  + +++G+EGKGL    +E   S+  + +   +++LN S AA V L
Sbjct: 259 TLDDYRADTGVVVVVGSEGKGLSRLVRENCDSILSIPIASSVESLNASVAAGVVL 313


>gi|254828578|ref|ZP_05233265.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258600976|gb|EEW14301.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
          Length = 252

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  AL      + +LL +       +W    
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEWLKGD 67

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F + T     I + + ++ V   +A        P +  +   +LL+V D V DP N+
Sbjct: 68  YDVFEISTEISHLISETMTEQGVFAVVATS-----EPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  K  +   +  + +S  G+  HIP I+ +NL D +  +   G 
Sbjct: 122 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWIANLEEEGV 180

Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG +  D  K L    K D +AL++G EG G+ P+ Q+  +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|56707583|ref|YP_169479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670054|ref|YP_666611.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456652|ref|ZP_03665125.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874404|ref|ZP_05247114.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604075|emb|CAG45072.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320387|emb|CAL08455.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254840403|gb|EET18839.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158740|gb|ADA78131.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 218

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH     ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245
           L      D +A++ GAEG G+R +T+
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209


>gi|218130102|ref|ZP_03458906.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
 gi|317476595|ref|ZP_07935840.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987606|gb|EEC53934.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
 gi|316907191|gb|EFV28900.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 246

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    + I ++L  K+  + L    + A      PV+ VP + I++   
Sbjct: 7   MIFGVRAVIEAIQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRFTR 65

Query: 107 KEAVHQG-LALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG +A  +A     T D V        + L ++LD + D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   + S + +A   K+++GAL  +P  R  NL D LQ + + GF  +  +      
Sbjct: 124 DAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE KG+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|329955854|ref|ZP_08296657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
           12056]
 gi|328525234|gb|EGF52284.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
           12056]
          Length = 246

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    + I ++L  K+  + L    + A      PV+ VP + I++   
Sbjct: 7   MIFGVRAVIEAIQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRFTR 65

Query: 107 KEAVHQG-LALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG +A  +A     T D V        + L ++LD + D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   + S + +A   K+++GAL  +P  R  NL D LQ + + GF  +  +      
Sbjct: 124 DAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE KG+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|325661898|ref|ZP_08150519.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471876|gb|EGC75093.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 251

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 105 FFILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 164

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++ + G   +      +      +    I L++G EG+G+    +E    +A 
Sbjct: 165 NLAKTMEELKARGLWFVCADMGGESMYRMNLTG-PIGLVIGNEGEGVSRLVKEKCDFVAS 223

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 224 IPMKGDIDSLNASVAAGVLAY 244


>gi|261337350|ref|ZP_05965234.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
 gi|270277727|gb|EFA23581.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
          Length = 293

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 28/213 (13%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            PV      T+ K+ G   +H+G   A+   PL S   D  RN+  + VL++V D  N+G
Sbjct: 82  IPVYIGSEATLHKLTGYR-LHRGALAAMRRWPLPS-VEDVCRNATRVAVLENVVDHTNVG 139

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD----------- 197
           AI+RSA A   D ++ T   +       A+ + G +  +P+ RI    D           
Sbjct: 140 AIMRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGEGDVRTADKHAWPE 199

Query: 198 -ALQKMHSWGFQTIGLS----SDSKKPLEQEIKN--------DKIALILGAEGKGLRPKT 244
             L+++H  GF T+ ++    S S + LE+ +++        DK+ALI G EG GL   T
Sbjct: 200 AGLEQLHGLGFTTVAMALTDDSISMQELERRLRSDPLERDHIDKLALIFGTEGDGLSHTT 259

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              A     + M   + +LNV+ ++AVA Y T+
Sbjct: 260 IAHADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|54113813|gb|AAV29540.1| NT02FT1642 [synthetic construct]
          Length = 218

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH     ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245
           L      D +A++ GAEG G+R +T+
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209


>gi|238916436|ref|YP_002929953.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
 gi|238871796|gb|ACR71506.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
          Length = 246

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 93/189 (49%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPH 145
           +  V  + +D++ G    HQG+    A      +D +  S         + +LD + DPH
Sbjct: 52  INYVDKERLDRLAGT-GHHQGVVAIGAAYEYAEVDDILASAKEKGEDPFIFILDEIEDPH 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R+A      G+I  KR +   +A +AK+++GA+ + P  +++N++  ++++   
Sbjct: 111 NLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNISQTIEELKKQ 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +      +      +K   I L++G EG G+    ++    +A + M G I +LN 
Sbjct: 171 GLWFVCADMGGETMYNLNLKG-PIGLVIGNEGNGVSRLVKDKCDFIASIPMKGDIDSLNA 229

Query: 266 SNAAAVALY 274
           S AA V  Y
Sbjct: 230 SVAAGVLAY 238


>gi|315302761|ref|ZP_07873535.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
 gi|313628869|gb|EFR97228.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
          Length = 252

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  AL+     + +LL +K+     +W    
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALHQDGL-VVELLVSKDVSVPEEWLKGN 67

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F + T     I   + +    QG+         P +  +   +LL+V D V DP N+
Sbjct: 68  YDVFEIST----EISHFISETMTEQGV-FAVVATTEPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D +I  +  +   +  + +S  G+  HIP I+ +NL D +  +   G 
Sbjct: 122 GTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWIANLEEEGV 180

Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG   D++ K L    K D +ALI+G EGKG+  + Q   +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDAQAKSLNDISKRDTLALIVGNEGKGISEELQARLSEKVYIPIYGKSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B1 str. Okra]
          Length = 257

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+   T P       D +R ++       +++LD + DPHN G+ILR+A      G+I
Sbjct: 77  HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA+E++   +++N+ + + K+   G    G            
Sbjct: 137 IPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  IAL++G+EG+G+   T+    ++  + M G I +LN S A  + +Y
Sbjct: 197 NLSGPIALVIGSEGRGISKLTKNKCDALVKIPMFGNITSLNASVAGGMLMY 247


>gi|331085693|ref|ZP_08334776.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406616|gb|EGG86121.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 251

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 105 FFILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 164

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G   +      +      +    I L++G EG+G+    +E    +A 
Sbjct: 165 NLAKTMEELKERGLWFVCADMGGESMYRMNLTG-PIGLVIGNEGEGVSRLVKEKCDFVAS 223

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 224 IPMKGDIDSLNASVAAGVLAY 244


>gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 243

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 8/194 (4%)

Query: 86  NLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           N+P+  +PV  V  + + K+   ++V     +       P   A+ + +++ +LD V DP
Sbjct: 56  NIPYEQYPVYYVTREILKKLT--DSVSGSWVMAVCHF--PEQQALTSDKII-ILDGVQDP 110

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+A++FS   I+ +K      +  + +S  GAL H+  IR   LT A++++  
Sbjct: 111 GNLGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGALFHLNIIRTELLT-AIEELKE 169

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G++  G S     PL Q     + ALI+G EGKG+R +         ++ M    ++LN
Sbjct: 170 KGYKIYGTSLHEAIPLSQVHPKKRHALIMGNEGKGVREEILCQTDQNVYIEMD-TFESLN 228

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+ +Y  +N
Sbjct: 229 VAVAAAICMYTFKN 242


>gi|146296777|ref|YP_001180548.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410353|gb|ABP67357.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 271

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 118/250 (47%), Gaps = 8/250 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDAN 86
           K+++  + K +H  + +   + GV  V  AL+     I  L+ ++ A  + +       +
Sbjct: 19  KRLKKLHDK-KHREEFKVFLVEGVKAVKEALDYAIEDINLLIFSQEASKKYEEFFSRCIS 77

Query: 87  LPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           L +   +K +   P+ I + +      QG+  E +      LD ++    ++V+D V DP
Sbjct: 78  LLNSGKLKRIVQVPEKIFEHISTTTTPQGVLAECS-FFDKELDVLKKHNRVVVIDSVQDP 136

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R A AF  + +IT        +  + +SA G++ H+  +R     + L+ ++ 
Sbjct: 137 GNLGTIIRCADAFGFECVITVNGTVDVYNPKVVRSAMGSMFHVDVVRERKKEEVLEALNK 196

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            GF     +      + +   +D+ A+++G E KG+     E AT    + MPG  ++LN
Sbjct: 197 RGFALYVTTPYGDVDISKLSVDDRFAIVIGNESKGVDVAFLENATKKVKISMPGKAESLN 256

Query: 265 VSNAAAVALY 274
            + AAA+ LY
Sbjct: 257 SAVAAAIVLY 266


>gi|323483931|ref|ZP_08089306.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
           WAL-14163]
 gi|323693473|ref|ZP_08107682.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323402769|gb|EGA95092.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
           WAL-14163]
 gi|323502480|gb|EGB18333.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 246

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 77/141 (54%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L +LD + DPHN+GAI+R+A      G+I  KR +   ++ +AK+++GA+ + P  +++
Sbjct: 99  FLFILDGIEDPHNLGAIIRTANQAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAKVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N++  ++++   G   +      +      +K   I L++G+EG G+    +E    +A 
Sbjct: 159 NISATIEELKEKGLWFVCADMGGELMYRMNLKG-PIGLVIGSEGDGVSRLVKEKCDYIAS 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 218 IPMKGDIDSLNASVAAGVLAY 238


>gi|254368751|ref|ZP_04984764.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121672|gb|EDO65842.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 218

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245
           L      D +A++ GAE  G+R +T+
Sbjct: 184 LYSMNLVDSVAIVAGAEDSGMRQRTK 209


>gi|154249698|ref|YP_001410523.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1]
 gi|154153634|gb|ABS60866.1| RNA methyltransferase, TrmH family, group 3 [Fervidobacterium
           nodosum Rt17-B1]
          Length = 234

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 4/185 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P    P   + K+ G+E  +QG+ ++           +  +  +++LD V DP N+GAI
Sbjct: 44  LPYTIAPKNVLKKLCGEEK-NQGVVIDIGDFQYADESYLPENPFIVLLDQVQDPQNLGAI 102

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+AVA   + ++ TK  S   +    K+++G +  IP +   NL   ++K+   G    
Sbjct: 103 VRTAVAAGVNMVVLTKDNSAHVTPGSIKASAGTIFRIPIVITVNLARYIEKLKDKGVWIY 162

Query: 211 GLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           G +    KPL  E+K ++ + ++ G EG G+R   +E+   +  + M   I +LNVS +A
Sbjct: 163 G-ADMRGKPL-WEVKLERPLGIVFGNEGSGIRQLVKESCDELVSIPMKTPIDSLNVSVSA 220

Query: 270 AVALY 274
            + +Y
Sbjct: 221 GILIY 225


>gi|307298256|ref|ZP_07578060.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916342|gb|EFN46725.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 247

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 8/197 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVR-----NSQLLMVLDHVNDP 144
           F ++ + P+ +  +  +E  HQG+ ++      S + + +R      +  +++LD + DP
Sbjct: 49  FRIEEMAPEKLANLC-REKKHQGVVIDLKQFPYSDSEELLRAIEEQRTATIVLLDQIQDP 107

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAI+R++VA   D I  T   S   +  + K ++G    IP I+I N+    + +  
Sbjct: 108 HNLGAIIRTSVAVGADAIAITSSNSAEITPSVVKVSAGLAFKIPIIKIINMAQFEEILKE 167

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            GF  I  S     P  +   ++K A++ G EGKG+R   +E +  +  + M   + +LN
Sbjct: 168 KGFW-IYASDMEGIPYYENEYSEKSAIVFGNEGKGVRRLVKERSDRLISIPMEDTVDSLN 226

Query: 265 VSNAAAVALYITQNHFA 281
           V+ +AA+ L+  +   A
Sbjct: 227 VAASAAIILFDRRRQLA 243


>gi|325263766|ref|ZP_08130499.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
 gi|324030804|gb|EGB92086.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
          Length = 260

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 77/141 (54%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 113 FFILLDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 172

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G   +      +   +  +    I L++G EG+G+    +E    +A 
Sbjct: 173 NLAKTMEELKERGLWFVCADMGGESMYKMNLTG-PIGLVVGNEGEGVGRLVKEKCDFVAA 231

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 232 IPMKGEIDSLNASVAAGVLAY 252


>gi|319952204|ref|YP_004163471.1| RNA methyltransferase, trmh family, group 3 [Cellulophaga algicola
           DSM 14237]
 gi|319420864|gb|ADV47973.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga algicola
           DSM 14237]
          Length = 254

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    +P+   TL+       A   + L ++LD ++D  N GAI+R+A     DGII
Sbjct: 76  HQGVIATISPITFFTLEELVEKVSAKETTPLFLLLDQLSDVRNFGAIIRTAECTGVDGII 135

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K+ +   +A   K+++GA   +P  ++ ++ DA+  + + G +TI  +  ++  +   
Sbjct: 136 IQKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGIKTIAATEKTENSVYDI 195

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  A+I+G+E  G+ P   +     A + + G I +LNVS A  V LY
Sbjct: 196 SFKEPCAIIMGSEDLGISPSILKVVDDKAKIPLLGEIGSLNVSVACGVFLY 246


>gi|15639103|ref|NP_218549.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025343|ref|YP_001933115.1| rRNA methylase [Treponema pallidum subsp. pallidum SS14]
 gi|3322373|gb|AAC65100.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017918|gb|ACD70536.1| possible rRNA methylase [Treponema pallidum subsp. pallidum SS14]
 gi|291059527|gb|ADD72262.1| RNA methyltransferase, TrmH family, group 3 [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 292

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD + DPHN+GAI+RSA  FS D ++    +    +  + + ++GA+  +P +R+ 
Sbjct: 132 LVLVLDAITDPHNVGAIVRSADQFSVDAVLLPHHHGAGGTETITRVSAGAVAWVPLVRVR 191

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL      +   GF   G +  + + +       K AL+LG EG G+ P  +    ++  
Sbjct: 192 NLVRTAGILKRSGFWLYG-ADVAGEAIGARTFPPKTALVLGNEGHGVSPLLRTHCDALIS 250

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G + +LNVS AA + LY
Sbjct: 251 IPTQGNVDSLNVSVAAGILLY 271


>gi|325111023|ref|YP_004272091.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
 gi|324971291|gb|ADY62069.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
          Length = 278

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 73/140 (52%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + LD + DPHN+GAI RSA  F   GII TK  S   +A +  +A+G +E IP+   +
Sbjct: 133 IWLALDSLQDPHNVGAIFRSASFFGVMGIIATKNSSAPINATVYDTAAGGVEDIPFAVET 192

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  AL+     G   +G S  ++K + +  +     +++G E KGLR    E    +  
Sbjct: 193 NLNRALKLSRRVGLWNLGTSEHAEKSVWEVDQKRPWMIVVGNEQKGLRRLVLEHCDQICQ 252

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           +   G   +LNVS AA + L
Sbjct: 253 VPPLGETSSLNVSVAAGILL 272


>gi|28493313|ref|NP_787474.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
 gi|28572576|ref|NP_789356.1| rRNA methyltransferase [Tropheryma whipplei TW08/27]
 gi|28410708|emb|CAD67094.1| putative rRNA methyltransferase [Tropheryma whipplei TW08/27]
 gi|28476354|gb|AAO44443.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
          Length = 263

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 26/208 (12%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL--------- 135
           +++PH F    VP  T+D++   +  HQG+AL     L  +    R  +LL         
Sbjct: 66  SDIPHIF----VPRSTLDRLT--DLPHQGVAL-----LCKSYRPSRAEELLKQTWPRPPL 114

Query: 136 -MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +  D V DP N+GAI+RSA AF    ++  K  S   + ++ K+++GA+  +P   + N
Sbjct: 115 FIACDQVTDPRNLGAIVRSAAAFRASAVLIGKNRSARVTPMVWKASAGAVGKLPIAEVGN 174

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALIL--GAEGKGLRPKTQETAT 249
           LT  + +   +G   +GL S+SK P+++ +   K DK AL+L  G+EG G+    ++   
Sbjct: 175 LTRYIVRFREYGGFVLGLDSNSKTPIDKSVFLKKEDKRALLLIVGSEGSGISHLVKKHCD 234

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +     + +LNVS A ++ALY  Q
Sbjct: 235 ELLTIPTDASVDSLNVSVAVSIALYELQ 262


>gi|238810259|dbj|BAH70049.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 244

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 87/167 (52%), Gaps = 3/167 (1%)

Query: 111 HQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           HQG+   L   P+         N + ++VLDH+ DPHN+GAI+R+A       +I +K  
Sbjct: 73  HQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLIISKER 132

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKND 227
           S + ++ + K +SG   ++  I++++++  L K+  W +   +    ++ + + Q   N 
Sbjct: 133 SANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQVTFNK 192

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L++G EG G+   T   A  + ++   G ++++NVS A  + LY
Sbjct: 193 PSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLY 239


>gi|308190283|ref|YP_003923214.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
 gi|319777677|ref|YP_004137328.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
 gi|307625025|gb|ADN69330.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
 gi|318038752|gb|ADV34951.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
          Length = 231

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 87/167 (52%), Gaps = 3/167 (1%)

Query: 111 HQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           HQG+   L   P+         N + ++VLDH+ DPHN+GAI+R+A       +I +K  
Sbjct: 60  HQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLIISKER 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKND 227
           S + ++ + K +SG   ++  I++++++  L K+  W +   +    ++ + + Q   N 
Sbjct: 120 SANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQVTFNK 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L++G EG G+   T   A  + ++   G ++++NVS A  + LY
Sbjct: 180 PSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLY 226


>gi|210632460|ref|ZP_03297388.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
 gi|210159555|gb|EEA90526.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
          Length = 342

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 12/261 (4%)

Query: 25  RNHRDY-KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARL 81
           R+H  Y +  Q+     R     E  ++ G      AL    P ++       +N  A  
Sbjct: 68  RSHAAYARDAQASASPRRDVHAAEGNYIEGRRAAFEALRTGFPIKRALIAQGVENDPAVR 127

Query: 82  DWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQ 133
           D  A L      VK+V    +D I      HQG+ LE           +           
Sbjct: 128 DLLAGLGEAGVSVKSVARAQLDAIS-SHGAHQGIVLEVGKFPYADLADIIAAAGPADRPA 186

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLDHV D  N GAI+RSA      G++   + S   +    K+++GA+ H+P  ++ 
Sbjct: 187 LVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHVPIAQVP 246

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+  AL+ + S GF   G +  ++          ++AL++G+EG G+     +T      
Sbjct: 247 NIARALEDLKSAGFWVGGATEHAEGICWDAPFEGRVALVMGSEGDGISRLVLDTCDFTTK 306

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L   G  ++LNV+ AA    +
Sbjct: 307 LPQRGATESLNVAQAATALCF 327


>gi|290893297|ref|ZP_06556283.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|290557105|gb|EFD90633.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
          Length = 252

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  AL      + +LL +       +W    
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEWLKGD 67

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F + T     I + + ++ V   +A        P +  +   +LL+V D V DP N+
Sbjct: 68  YDVFEISTEISHLISETMTEQGVFAVVATS-----EPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  K  +   +  + +S  G+  HIP I+ ++L D +  +   G 
Sbjct: 122 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFDWIANLEEEGV 180

Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG +  D  K L    K D +AL++G EG G+ P+ Q+  +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYITIYGDSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|163786199|ref|ZP_02180647.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159878059|gb|EDP72115.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 244

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 87/171 (50%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG   + +P+    +D +         + L ++LD ++D  N GAI+R+A     +GII
Sbjct: 67  HQGAVAQISPIAFHNIDDLVMQVIESGKTPLFLLLDQLSDVRNFGAIVRTAECTGVNGII 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K+     +    K+++GA+  IP  ++ ++ DA+  M S G + I  +  +   +   
Sbjct: 127 IQKKGGAPINGDTIKTSAGAIFKIPVCKVDHIKDAVFHMQSSGIKVIAATEKANDFVYDV 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  A+I+G+EG+G+ P   +   + A L + G I++LNVS A    LY
Sbjct: 187 SFKEPCAIIMGSEGRGINPSVLKVVDAKAKLPILGEIESLNVSVACGAFLY 237


>gi|187776558|ref|ZP_02993031.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
           15579]
 gi|187775217|gb|EDU39019.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
           15579]
          Length = 257

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+   T P       D +R ++       +++LD + DPHN G+ILR+A      G+I
Sbjct: 77  HQGVIAFTTPYQYCAVEDIIRYAKQKEEEPFIVILDEIEDPHNFGSILRTAEVCGVHGVI 136

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA+E++   +++N+ + + K+   G    G            
Sbjct: 137 IPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  IAL++G+EG+G+   T+     +  + M G I +LN S A  + +Y
Sbjct: 197 SLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNASVAGGMLMY 247


>gi|158317422|ref|YP_001509930.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
 gi|158112827|gb|ABW15024.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
          Length = 332

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 7/192 (3%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           H  PV    P  + +I G E VH+G   ++   PLL+P ++ +R ++ ++V + +    N
Sbjct: 138 HEAPVYVAGPAVLAQITGFE-VHRGALASMCRRPLLNP-VELLRVARRVLVCEDLVSHTN 195

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RSA     D ++ + R +        + + G +  +PY R+     AL  +   G
Sbjct: 196 LGAIFRSAAGLGMDAVMLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALSLLGEAG 255

Query: 207 FQTIGLS--SDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+ + L+  SD+ +  +      D++AL+LG EG+GL  +   TAT    + M   + +L
Sbjct: 256 FEVLALTPASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSL 315

Query: 264 NVSNAAAVALYI 275
           NV+  AA+A Y+
Sbjct: 316 NVAATAAIACYV 327


>gi|148381440|ref|YP_001255981.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. ATCC 3502]
 gi|153932755|ref|YP_001385815.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
 gi|153937009|ref|YP_001389222.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
 gi|168178813|ref|ZP_02613477.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           NCTC 2916]
 gi|170759212|ref|YP_001788840.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
 gi|226950952|ref|YP_002806043.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A2 str. Kyoto]
 gi|148290924|emb|CAL85060.1| putative tRNA/rRNA methyltransferase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928799|gb|ABS34299.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. ATCC 19397]
 gi|152932923|gb|ABS38422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. Hall]
 gi|169406201|gb|ACA54612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A3 str. Loch Maree]
 gi|182670049|gb|EDT82025.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           NCTC 2916]
 gi|226841703|gb|ACO84369.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A2 str. Kyoto]
          Length = 257

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+   T P       D +R ++       +++LD + DPHN G+ILR+A      G+I
Sbjct: 77  HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA+E++   +++N+ + + K+   G    G            
Sbjct: 137 IPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  IAL++G+EG+G+   T+     +  + M G I +LN S A  + +Y
Sbjct: 197 NLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVAGGMLMY 247


>gi|77407564|ref|ZP_00784377.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
 gi|77173827|gb|EAO76883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
          Length = 169

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 122 LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           LS  +    N +  L+++LD + DPHN+G+ILR+A A +  GII  K  S   + V++K+
Sbjct: 48  LSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKT 107

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ++GA+EH+P  R++NL+  L  +    F   G   +   P  +     K+AL++G EGKG
Sbjct: 108 STGAVEHVPIARVTNLSQTLDTLKDKEFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKG 166

Query: 240 L 240
           +
Sbjct: 167 I 167


>gi|283769024|ref|ZP_06341930.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
 gi|283104381|gb|EFC05758.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
          Length = 235

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 79/143 (55%), Gaps = 2/143 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD + DP N+G I+R+A +F  + +  ++    + +    +++ GA+  IP  R  +
Sbjct: 95  VILLDEIQDPGNLGTIIRTAKSFGYEAVYCSENCCDAFNPKCVQASQGAIFSIPVFR-ED 153

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + +  +   G + +G S     PL++  K D IA++LG EG+G++    E    +  +
Sbjct: 154 LKNVISSLQERGIKVLGTSLQQSIPLKKVKKEDDIAILLGNEGQGVKGNLLELCDEITRI 213

Query: 255 HMPGIIKALNVSNAAAVALYITQ 277
            M G  ++LNV+ A A+ +Y+ Q
Sbjct: 214 EMSG-FESLNVAVAGAILMYMFQ 235


>gi|325280595|ref|YP_004253137.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
           splanchnicus DSM 20712]
 gi|324312404|gb|ADY32957.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
           splanchnicus DSM 20712]
          Length = 247

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 8/172 (4%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+  E +P+    L+  LD V  +     +++LD V D  N GAI+RSA     D +I
Sbjct: 69  HQGVLAEISPVPYQDLTEVLDGVEAAGRVPFVLILDRVTDVRNFGAIVRSAECAGVDVVI 128

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPLEQ 222
              + S   S+   K+++GAL H+P  R+ NL   ++++    G +    +  ++K    
Sbjct: 129 IPNKNSAKISSDALKTSAGALYHVPVCRVLNLKRVVRELKFQRGIRVYAATEKAEKFYTG 188

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  A+I+G+E KG+  +    AT    +   G I++LNVS AAAV L+
Sbjct: 189 ADLTLPTAIIMGSEDKGIDEELINIATDCIKIPQKGQIESLNVSAAAAVLLF 240


>gi|269114836|ref|YP_003302599.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322461|emb|CAX37196.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 230

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 4/172 (2%)

Query: 111 HQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           HQG A +        L ++    S  +++LDH+ DP N GAI+RSA  F    II  K  
Sbjct: 57  HQGYAAKLKDFQYHDLGSIFKDGSDKVLILDHIQDPQNFGAIIRSANVFGFKHIIIPKDR 116

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKND 227
           +   +  + K++SG  +++  I++++L DA++++ + GF     + + + K L     N+
Sbjct: 117 ACDVTPSVLKTSSGGFKNVKVIKVNSLFDAIEELKNKGFWIYASALNQQAKKLNDAKFNE 176

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQN 278
           KIA+I+G EG G+     + +  + ++      +++LNVS A  + LY   N
Sbjct: 177 KIAIIVGNEGSGVSKTLLKHSDEIIYIEQDKESVQSLNVSVATGILLYTVFN 228


>gi|237715180|ref|ZP_04545661.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|229445013|gb|EEO50804.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
          Length = 246

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 6   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINRITR 64

Query: 107 KEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+         +    L P L     +   ++LD V D  N GAI R+    + 
Sbjct: 65  KN--HQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 123 DAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKGDYD 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y
Sbjct: 183 YTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVY 237


>gi|153938342|ref|YP_001392853.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
 gi|152934238|gb|ABS39736.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           F str. Langeland]
 gi|295320831|gb|ADG01209.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           F str. 230613]
          Length = 257

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+   T P       D +R ++       +++LD + DPHN G+ILR+A      G+I
Sbjct: 77  HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA+E++   +++N+ + + K+   G    G            
Sbjct: 137 IPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  IAL++G+EG+G+   T+     +  + M G I +LN S A  + +Y
Sbjct: 197 NLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNASVAGGMLMY 247


>gi|295108534|emb|CBL22487.1| rRNA methylase, putative, group 3 [Ruminococcus obeum A2-162]
          Length = 247

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 21/203 (10%)

Query: 92  PVKTVPPQ-----TIDKIVGKEAV--------HQGLALETAPLLSPTLDAV--RNSQ--- 133
           PV+T+  +     TI   V KE +        HQG+  + A     T+D +  R  +   
Sbjct: 34  PVRTIAREARKTDTIINYVSKERLDQLSETRAHQGVIAQAAAYEYSTVDEILARAEEKGE 93

Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              L++LD+V DPHN+GAI+R+A      G+I  KR +   ++ +AK+++GA+ + P  +
Sbjct: 94  PPFLILLDNVEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAK 153

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++N+   ++++   G   +      +   + ++    + L++G EG+G+    +E     
Sbjct: 154 VTNIVRMIEELKEKGIWFVCADMGGEIMYDLDLTG-PMGLVIGNEGEGVSRLVREACDFT 212

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           A + M G I +LN S AA V  Y
Sbjct: 213 ASIPMKGDIDSLNASVAAGVLAY 235


>gi|331090785|ref|ZP_08339632.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399893|gb|EGG79552.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 246

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 5/143 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            + +LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++
Sbjct: 99  FIFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVT 158

Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           NL   ++++   G  F    +  ++   L        I L++G EG G+    +E    +
Sbjct: 159 NLVKTMEELKEKGLWFVCADMGGETMYRLNL---TGPIGLVIGNEGTGVGRLVKEECDFV 215

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           A + M G I +LN S AA V  Y
Sbjct: 216 ASIPMKGDIDSLNASVAAGVLAY 238


>gi|189467068|ref|ZP_03015853.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
           17393]
 gi|189435332|gb|EDV04317.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
           17393]
          Length = 246

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     + L ++LD V D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKTTLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE KG+  +          + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|262408867|ref|ZP_06085412.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647643|ref|ZP_06725210.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
           CC 2a]
 gi|294810718|ref|ZP_06769366.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298481741|ref|ZP_06999931.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
 gi|262353078|gb|EEZ02173.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637009|gb|EFF55460.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
           CC 2a]
 gi|294442051|gb|EFG10870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087702|emb|CBK69225.1| rRNA methylase, putative, group 3 [Bacteroides xylanisolvens XB1A]
 gi|298271963|gb|EFI13534.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
          Length = 247

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINRITR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     +   ++LD V D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVY 238


>gi|289548783|ref|YP_003473771.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
           14484]
 gi|289182400|gb|ADC89644.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
           14484]
          Length = 248

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 21/240 (8%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQTIDK 103
           L +YG + V  A+ +  R + ++L   ++     L +L  + N+     ++ VP + I++
Sbjct: 4   LIIYGRNPVLEAIRS-GRSVEKVLVAHDSHPPHQLVKLCKEKNIK----LQKVPRKKIEE 58

Query: 104 IVGKEAVHQGLAL-------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +     LA+       +   L   TL+       L+VLDH+ DP N+G +LR+   
Sbjct: 59  LAGTKKTQGVLAILSPVHYVKEEELFRKTLE---RGSFLLVLDHLTDPQNVGNLLRTCEV 115

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G +  K  S   +  + K++SGA+ H+   R+S+L  +L+     G   + +    
Sbjct: 116 LGGVGALLPKDRSCPINQTVIKASSGAVFHLLLSRVSSLRRSLENFKRVGGWIVVVERGG 175

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K   + +I     AL+LG+EG+G+     E A  +  + M G I +LNVS+A A+A++ T
Sbjct: 176 KDIRQVDIPLP-CALVLGSEGEGVSKSVMEIADLIVSIPMGGKITSLNVSSAGAIAIWET 234


>gi|297184491|gb|ADI20605.1| rRNA methylases [uncultured gamma proteobacterium EBAC_27G05]
          Length = 240

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 2/146 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R++   +V+D+V DP N+GA +RSA A +  G+I  K +    + ++ + ++G  E +  
Sbjct: 89  RDNPTFLVIDNVIDPRNLGACIRSAAASNVAGVIINKHHCSPITPLVRQVSAGGTEAMKI 148

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETA 248
             ++NL +A++     G+  +G +S+  K +  E+  N  I  I+G+E +G+R KT E  
Sbjct: 149 FIVTNLINAIKHFEKLGYLILG-TSEHAKSMHTELDLNKPILTIIGSEEEGMREKTLEKC 207

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           +++  L     + +LNVS AA V L+
Sbjct: 208 STVCTLSKNETLNSLNVSVAAGVILF 233


>gi|240850924|ref|YP_002972324.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
 gi|240268047|gb|ACS51635.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
          Length = 269

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 9/234 (3%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF-PVKTVPPQTIDKIVGKEAVH 111
           G  T+SA L++       LL   N L+ L        P  P+  VP + +D I G   VH
Sbjct: 38  GKVTLSALLHSKDFSAISLLIVANRLSGLLPLLEKTQPLCPIYCVPQKVMDNITGFH-VH 96

Query: 112 QGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +G+      +T P L   L  +    L++VL  +++  N+G+I R+A AF+ +GII  K 
Sbjct: 97  RGVLGIGKRKTLPSLQSFLQHLPEKALILVLCGISNHDNMGSIFRNAAAFASNGIIVDKT 156

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                     + ++GA   +PY + +++ D +  +    F    LS  +   L+Q  K  
Sbjct: 157 SCDPLYRKSIRVSAGAALKVPYTQNADINDIIAALKDKNFHLYALSPSASHTLKQANKTK 216

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           ++ALI G EG GL     + + ++  + M     +LNV+ A+ +AL  +I  +H
Sbjct: 217 RMALIFGTEGDGLPTHILQQSKTL-RIPMTNGFDSLNVATASGIALAHFINFDH 269


>gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 267

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 7/188 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGA 149
           P      Q +  +VG       LA+ + AP   PT D  V N+++L VL+ VND  N+GA
Sbjct: 78  PAYVTSAQIMSDVVGFHLNRGVLAVADRAP--KPTFDEVVANARVLAVLEGVNDHENLGA 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A AF  DG++     +        + + G +  +P+        AL ++  +GF  
Sbjct: 136 MFRNAAAFGVDGVLLGASCADPLYRRSVRVSMGHVLRVPFTTAERWPCALDELRRYGFHL 195

Query: 210 IGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             L+  S+    +   E   ++IAL+ G+EG GL     + A S   + M   + +LNV+
Sbjct: 196 AALTPRSEAVTLRNVHEAGYERIALLFGSEGHGLSQAALDAADSWVRIPMASGVDSLNVA 255

Query: 267 NAAAVALY 274
            AAAVA Y
Sbjct: 256 TAAAVAFY 263


>gi|212716042|ref|ZP_03324170.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661409|gb|EEB21984.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
           16992]
          Length = 288

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 24/210 (11%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147
            PV    P+ + ++ G   +H+G   A++  PL  P+++ V R ++ + V++++ D  N+
Sbjct: 82  IPVYVASPEQLKQLTGYR-LHRGALAAMKRWPL--PSVEEVCRGARRIAVMENIVDHTNV 138

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQK 201
           GA++RSA A   D ++ T           A+ + G +  IP+ RI            +Q+
Sbjct: 139 GALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDRHYWPFTGMQE 198

Query: 202 MHSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETAT 249
           +H  GF T+ ++  D    LE+ ++            DK+ALI G EG GL   T   A 
Sbjct: 199 LHDLGFTTVAMALEDDSISLEELVRRLNNADDEKDHIDKLALIFGTEGDGLSHHTISRAD 258

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   + +LNV+ ++AVA Y T  H
Sbjct: 259 LTVKIPMSHGVDSLNVAASSAVAFYSTAVH 288


>gi|16803258|ref|NP_464743.1| hypothetical protein lmo1218 [Listeria monocytogenes EGD-e]
 gi|46907437|ref|YP_013826.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092017|ref|ZP_00229811.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
           H7858]
 gi|47095060|ref|ZP_00232673.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           1/2a F6854]
 gi|217964716|ref|YP_002350394.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
 gi|224499109|ref|ZP_03667458.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
           Finland 1988]
 gi|224502486|ref|ZP_03670793.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
           FSL R2-561]
 gi|226223818|ref|YP_002757925.1| rRNA methylase [Listeria monocytogenes Clip81459]
 gi|254823528|ref|ZP_05228529.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254852912|ref|ZP_05242260.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|254898621|ref|ZP_05258545.1| rRNA methylase [Listeria monocytogenes J0161]
 gi|254911890|ref|ZP_05261902.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932904|ref|ZP_05266263.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254936215|ref|ZP_05267912.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|254991828|ref|ZP_05274018.1| rRNA methylase [Listeria monocytogenes FSL J2-064]
 gi|255522191|ref|ZP_05389428.1| rRNA methylase [Listeria monocytogenes FSL J1-175]
 gi|284801538|ref|YP_003413403.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
 gi|284994680|ref|YP_003416448.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
 gi|300764367|ref|ZP_07074361.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|16410634|emb|CAC99296.1| lmo1218 [Listeria monocytogenes EGD-e]
 gi|46880705|gb|AAT04003.1| RNA methyltransferase, TrmH family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47016678|gb|EAL07598.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           1/2a F6854]
 gi|47019733|gb|EAL10472.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
           H7858]
 gi|217333986|gb|ACK39780.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
 gi|225876280|emb|CAS04989.1| Putative rRNA methylase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606248|gb|EEW18856.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|258608805|gb|EEW21413.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|284057100|gb|ADB68041.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
 gi|284060147|gb|ADB71086.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
 gi|293584458|gb|EFF96490.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293589848|gb|EFF98182.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293592748|gb|EFG00509.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|300515019|gb|EFK42072.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|307570723|emb|CAR83902.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes L99]
 gi|313609196|gb|EFR84870.1| RNA methyltransferase [Listeria monocytogenes FSL F2-208]
 gi|328466614|gb|EGF37749.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 1816]
 gi|332311603|gb|EGJ24698.1| RNA methyltransferase [Listeria monocytogenes str. Scott A]
          Length = 252

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  AL      + +LL +       +W    
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEWLKGD 67

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F + T     I + + ++ V   +A        P +  +   +LL+V D V DP N+
Sbjct: 68  YDVFEISTEISHLISETMTEQGVFAVVATS-----EPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  K  +   +  + +S  G+  HIP I+ ++L D +  +   G 
Sbjct: 122 GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFDWIANLEEEGV 180

Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG +  D  K L    K D +AL++G EG G+ P+ Q+  +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|153808238|ref|ZP_01960906.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
 gi|149129141|gb|EDM20357.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
          Length = 247

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     +   ++LD V D  N GAI R+    + 
Sbjct: 66  KN--HQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPARGSASVNADAVKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE  G+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|312131975|ref|YP_003999315.1| RNA methyltransferase, trmh family, group 3 [Leadbetterella
           byssophila DSM 17132]
 gi|311908521|gb|ADQ18962.1| RNA methyltransferase, TrmH family, group 3 [Leadbetterella
           byssophila DSM 17132]
          Length = 263

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 121/249 (48%), Gaps = 24/249 (9%)

Query: 41  RHTSQP-ENLFLYGVHTVSAALNNPSR--KIFQLLATKNA-----LARLDWDANLPHPFP 92
           +H ++P +  F++GV++V   L +     KI  L   K+      LAR           P
Sbjct: 14  KHINRPNKEDFVFGVNSVIETLKSEQEIDKILLLKEMKHVEEIETLAR-------NRGIP 66

Query: 93  VKTVPPQTIDKIVGKEAVHQG-LALETA---PLLSPTLDAVRNSQ---LLMVLDHVNDPH 145
           V+ VP + ++++  K   HQG +A  +A    +LS  + ++  S    L+++LD + D  
Sbjct: 67  VQKVPMEKLNRVTMKN--HQGAIAFVSAVNFAILSNVVTSIFESGESPLVLILDRITDVR 124

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI RSA       ++   R S   +    K++SGAL  IP  R ++L + ++ + + 
Sbjct: 125 NFGAICRSAECSGVHAVVVPARGSAQINGDAMKTSSGALNFIPVCRETDLINTVKYLKNS 184

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GFQ I  +      +     +   A+I+G+E  G+     + +   A + + G +++LNV
Sbjct: 185 GFQIISCTEKGNDLVYDADYSLPTAIIMGSEEDGISDALIDLSDFKAQIPLKGKVESLNV 244

Query: 266 SNAAAVALY 274
           S AA V L+
Sbjct: 245 SVAAGVILF 253


>gi|239047833|ref|NP_001141631.2| hypothetical protein LOC100273751 [Zea mays]
 gi|238908839|gb|ACF86752.2| unknown [Zea mays]
          Length = 549

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 39/201 (19%)

Query: 111 HQGLALETAPLLS---PTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ L+ +PL       LD VR     + + + LD + DP N+GAI+RSA  F   G++
Sbjct: 332 HQGVVLDASPLEMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVV 391

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222
              + S   S V++K+++G+LE I  +   N+   L      G++ +G +  +K  PL Q
Sbjct: 392 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSQ 451

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------------------------ 258
                   L++G+EG GLRP  + + T +  + +PG                        
Sbjct: 452 VELGVPTILVMGSEGTGLRPLVERSCTHL--VRIPGNVDVSVEGADADAGEEGDSSSNRD 509

Query: 259 -----IIKALNVSNAAAVALY 274
                 +++LNVS AA V LY
Sbjct: 510 LRSFLAVESLNVSVAAGVLLY 530


>gi|239622037|ref|ZP_04665068.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515228|gb|EEQ55095.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516989|emb|CBK70605.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
          Length = 292

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 32/221 (14%)

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140
           W A++P    V    P+ + ++ G   +H+G   A+   PL S   +  R+++ + V+++
Sbjct: 78  WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCRSARRVAVMEN 131

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--- 197
           + D  N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   
Sbjct: 132 IVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGT 191

Query: 198 ---------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236
                     + ++ S GF T+ ++ + +             P E     DK+ALI G E
Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTE 251

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GL   T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 252 GDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|29833339|ref|NP_827973.1| rRNA methylase [Streptomyces avermitilis MA-4680]
 gi|29610462|dbj|BAC74508.1| putative rRNA methylase [Streptomyces avermitilis MA-4680]
          Length = 272

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 9/181 (4%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146
           P PV  V P+  +++ G   VH+G   +++  PL  PT D +   ++ +++++ VND  N
Sbjct: 76  PAPVYAVSPELAEQVTGYH-VHRGALASMQRKPL--PTADELLATARRVVIMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   G
Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPKGLESVREAG 192

Query: 207 FQTIGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F  + L+ D K K L++    K D++AL+LGAEG GL  +    A     + M   + +L
Sbjct: 193 FNLLALTPDEKAKTLDETAPHKMDRVALMLGAEGDGLSTQALVAADEWVRIPMAHGVDSL 252

Query: 264 N 264
           N
Sbjct: 253 N 253


>gi|261366641|ref|ZP_05979524.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
           variabile DSM 15176]
 gi|282571463|gb|EFB76998.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
           variabile DSM 15176]
          Length = 260

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 17/195 (8%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           VK VP   + K+ G    HQG+A   A +   +L+       A   +  L++ D V DPH
Sbjct: 61  VKRVPGNKLQKLCGTPD-HQGVAARAAEVQYASLEDLFAAASAKNEAPFLVLCDGVEDPH 119

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMH 203
           N+GAI+RSA      G++  KR     +  + K+++GA   +P  R++NL  A++  K H
Sbjct: 120 NLGAIIRSAYLCGAHGVVIPKRGGVGVTGTVMKASAGAAARLPVARVTNLAQAIRTIKEH 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PG---I 259
           +       L      PL +   +  +AL+LG+EG G    T++   +   L M PG    
Sbjct: 180 NVFVYCADLGG---APLSRTDLSGPVALVLGSEGGGPGALTRKLCDAAVTLEMAPGQATG 236

Query: 260 IKALNVSNAAAVALY 274
           + + NVS AA +  Y
Sbjct: 237 VDSYNVSVAAGILCY 251


>gi|242058639|ref|XP_002458465.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
 gi|241930440|gb|EES03585.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
          Length = 552

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 13/171 (7%)

Query: 111 HQGLALETAPLLS---PTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+ L+ +PL       LD VR     + + + LD + DP N+GAI+RSA  F   G+I
Sbjct: 332 HQGVVLDASPLEMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVI 391

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PL-E 221
              + S   S V++K+++G+LE I  +   N+   L      G++ +G +  +K  PL E
Sbjct: 392 LCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSE 451

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            EI    I L++G+EG GLRP  + + T +  + +PG +    V  A A A
Sbjct: 452 VEIGVPTI-LVMGSEGTGLRPLVERSCTHL--VRIPGNVDVF-VEGAGADA 498


>gi|227538387|ref|ZP_03968436.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241769|gb|EEI91784.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 259

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 118/262 (45%), Gaps = 15/262 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PH 89
           MQ+F +  R+  +  N  ++G+  V  A+++  ++I  L   +     L  +       H
Sbjct: 1   MQNFQRHDRNEKRESNQMVFGIRAVIEAIDS-GKEIESLFVQRGLGGSLFLELKALIKEH 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVN 142
               + VP + +++I  K   HQG+    +P+       L P +     + L+++LD V 
Sbjct: 60  EIGFQQVPIEKLNRITRKN--HQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GAI R+A       II  K+ S   +    K+++GAL  IP  R  NL    + +
Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +  +  +++ +          +I+GAE  G+       +  +A + M G I +
Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDVGVSDDLIRISDHLAKIPMFGEIGS 237

Query: 263 LNVSNAAAVALY--ITQNHFAK 282
           LNVS +A V LY  I Q    K
Sbjct: 238 LNVSVSAGVVLYEAIRQRQITK 259


>gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio]
          Length = 387

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 40/267 (14%)

Query: 41  RHTSQP----ENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHP 90
           R  SQP    E   ++GV     AL    R    L         ++A+ R+  +A +   
Sbjct: 118 RKDSQPNQDKEFEIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEA-IRRG 176

Query: 91  FPVKTVPPQTIDKIV-GKEAVHQGLAL---------ETAPLLSPTLDAVRNSQLLMVLDH 140
             +K V  QT++K+  GK  VHQGL L         E  P+ S  L+      L +VLD 
Sbjct: 177 VQIKRVNKQTLEKMCDGK--VHQGLCLQASCLGFIKEERPITS--LEVKNQRPLWLVLDG 232

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+GAILRSA     D I+++   S   +  ++K+++G +E +     SNL   ++
Sbjct: 233 VQDPMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIK 292

Query: 201 KMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMA- 252
                G+Q   T+GL   S +       + K++    L++G EG GL  + ++    +  
Sbjct: 293 VKVEEGWQVVGTVGLEEGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLIT 352

Query: 253 -----HLHMPGIIKALNVSNAAAVALY 274
                H+H PG +++LNVS A  + L+
Sbjct: 353 IPPRRHMH-PG-VESLNVSVATGILLH 377


>gi|332800099|ref|YP_004461598.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332697834|gb|AEE92291.1| RNA methyltransferase, TrmH family, group 3 [Tepidanaerobacter sp.
           Re1]
          Length = 250

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 12/190 (6%)

Query: 96  VPPQTIDKI----VGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDP 144
           VP   ID+     + K A HQG+  + A      +   L   R+      +++L+ + DP
Sbjct: 48  VPISEIDEAAFLSMAKTAGHQGILAKVASKDYYSVEDILKTARDLDEDPFILILNELTDP 107

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G+I+R+A      GII  K  +   +  +AK +SGA+E++   R++N+   + ++  
Sbjct: 108 QNLGSIIRTADGMGAHGIIIPKNRACGITPTVAKISSGAVEYVKVARVTNIARTIDELKK 167

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   IG  ++ K   E ++    IAL++G E KGL    ++    +  + + G I +LN
Sbjct: 168 EGLWIIGADAEGKNYFEVDLTG-SIALVIGGEDKGLGKLVKQKCDILVRIPLRGRITSLN 226

Query: 265 VSNAAAVALY 274
            + AA++  Y
Sbjct: 227 AAVAASILGY 236


>gi|224535475|ref|ZP_03676014.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522941|gb|EEF92046.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 246

 Score = 79.0 bits (193), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     + L ++LD V D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKVTLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE KG+  +          + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
 gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
          Length = 271

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 10/195 (5%)

Query: 94  KTVPPQTIDKIVGKEAVH----QGLA----LETAPLLSPTLDAVRNSQLLMV-LDHVNDP 144
           K  P Q +D+ V +        QG+A    +   P+    ++A     +LMV LD + DP
Sbjct: 74  KGCPVQPVDRRVLERVCEVITPQGIAAVVRIPERPMPGFAVEAPEEDPVLMVALDGIQDP 133

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA+LR A A    G++  +  +   S    +S+ GA   +P IR   L + + + H+
Sbjct: 134 GNVGAVLRVARAVGVTGVLCGEDTADPFSPKAVRSSMGAAFTVP-IRQGRLVNMIGEWHA 192

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +  +       ++   N  + ++LG EG+G+ P+ +       H+ MPG  ++LN
Sbjct: 193 KGVEPVETAVGEGVRYDRWNWNIPVMIVLGNEGRGISPEVRHLCRGKVHIPMPGGGESLN 252

Query: 265 VSNAAAVALYITQNH 279
           V+ AAA+ LY  + H
Sbjct: 253 VAVAAALLLYEARRH 267


>gi|329961137|ref|ZP_08299392.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
           12057]
 gi|328532075|gb|EGF58885.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
           12057]
          Length = 249

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L  +  A L     PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+   T+ +       L P L     + L ++LD + D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFTSSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   + S S +A   K+++GAL  +P  R  +L   LQ +   GF  +  +      
Sbjct: 124 DAVIIPAKNSVSVNADAMKTSAGALHTLPVCREQSLKGTLQFLKDSGFHIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE KG+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|213692458|ref|YP_002323044.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523919|gb|ACJ52666.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458603|dbj|BAJ69224.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 292

 Score = 78.6 bits (192), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 30/220 (13%)

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHV 141
           W A++P    V    P+ + ++ G   +H+G        L P++ +  R+++ + V++++
Sbjct: 78  WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWLLPSVAEVCRSARRVAVMENI 132

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD---- 197
            D  N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D    
Sbjct: 133 VDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTE 192

Query: 198 --------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEG 237
                    + ++ S GF T+ ++ + +             P E     DK+ALI G EG
Sbjct: 193 NKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPDEDPTHIDKLALIFGTEG 252

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL   T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 253 DGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|168181845|ref|ZP_02616509.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Bf]
 gi|237796961|ref|YP_002864513.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
           657]
 gi|182674742|gb|EDT86703.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Bf]
 gi|229262334|gb|ACQ53367.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Ba4 str. 657]
          Length = 257

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+   T P       D +R ++       +++LD + DPHN G+ILR+A      G+I
Sbjct: 77  HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA E++   +++N+ + + K+   G    G            
Sbjct: 137 IPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  IAL++G+EG+G+   T+     +  + M G I +LN S A  + +Y
Sbjct: 197 NLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVAGGMLMY 247


>gi|322807825|emb|CBZ05400.1| trmh family tRNA/rRNAmethyltransferase YacO [Clostridium botulinum
           H04402 065]
          Length = 257

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPL-LSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+   T P       D +R ++       +++LD + DPHN G+ILR+A      G+I
Sbjct: 77  HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHNFGSILRTAEVCGAHGVI 136

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  + K+++GA E++   +++N+ + + K+   G    G            
Sbjct: 137 IPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKGIWIYGADMCGNDYCFDV 196

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  IAL++G+EG+G+   T+     +  + M G I +LN S A  + +Y
Sbjct: 197 NLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNASVAGGMLMY 247


>gi|296454038|ref|YP_003661181.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183469|gb|ADH00351.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 292

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 30/220 (13%)

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHV 141
           W A++P    V    P+ + ++ G   +H+G        L P++ +  R+++ + V++++
Sbjct: 78  WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWLLPSVAEVCRSARRVAVMENI 132

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD---- 197
            D  N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D    
Sbjct: 133 VDHTNVGALMRSAAALDVDAVLATPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTE 192

Query: 198 --------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEG 237
                    + ++ S GF T+ ++ + +             P E     DK+A+I G EG
Sbjct: 193 NKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLAMIFGTEG 252

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL   T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 253 DGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|315452502|ref|YP_004072772.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179]
 gi|315131554|emb|CBY82182.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179]
          Length = 227

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG   +  P  S  L  +++   L+VL  ++D  N+GA+ RS      DG+I  K   P
Sbjct: 65  HQGWLAKVLPPKSSALGVLKSLDKLLVLCGLSDVGNVGALFRSVACLGFDGVIMDKAL-P 123

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGFQTIGLSSDSKKPLEQEIK 225
            E   LA+++ GAL  +P+    N  D LQ     ++H +G    G      + + Q + 
Sbjct: 124 FEG--LARASMGALYDVPFCVCPNPLDILQGLKDVRVHCYGAHIEG------QNVRQVVF 175

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +A+ LG+EG GL PK      ++ ++ M G I +LNVS A A+ +
Sbjct: 176 KPPLAIFLGSEGAGLAPKLVRRMDTLVNIGMEGKIDSLNVSVAGAILM 223


>gi|290961783|ref|YP_003492965.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260651309|emb|CBG74431.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 272

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 9/181 (4%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHN 146
           P PV  V P+  +++ G   VH+G   +++  PL  PT D +  + + +++++ VND  N
Sbjct: 76  PAPVYAVSPELAEQVTGYH-VHRGALASMQRKPL--PTADQLLGAARRVVIMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R+      L  +   G
Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLDAVRDAG 192

Query: 207 FQTIGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F  + L+ D K K L++    + D++AL+LGAEG GL  K   +A     + M   + +L
Sbjct: 193 FTLLALTPDEKAKSLDETAPHRMDRVALMLGAEGDGLSTKALMSADEWVRIPMAHGVDSL 252

Query: 264 N 264
           N
Sbjct: 253 N 253


>gi|301059011|ref|ZP_07199977.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
           NaphS2]
 gi|300446892|gb|EFK10691.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
           NaphS2]
          Length = 278

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 75/142 (52%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S LL+V DH+ D  N+GA++R+A  F   G+I  K  S   +  + K +SGA   +P  R
Sbjct: 121 SALLLVADHITDSGNLGALMRTAAFFGAHGLIIPKDRSAGITPTVLKRSSGAHTKLPVAR 180

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL+ AL ++       +G + ++++ +        + L+LG E KGL P  ++    +
Sbjct: 181 VTNLSRALNELSRNELWIMGAAGEAEESIYDFDWRRPLVLVLGNERKGLSPSARKQCHGL 240

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             +  PG   +LN+S A  V L
Sbjct: 241 VSIPSPGNTDSLNISVAGGVIL 262


>gi|194335814|ref|YP_002017608.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308291|gb|ACF42991.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 248

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPLLSPTLDAV----RNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+    + +   +L+ V    RN+  LL+VL  ++DPHNIGAI+R+A A + D ++  
Sbjct: 72  HQGVCALISSVTYYSLEEVLATPRNTFPLLVVLQGLDDPHNIGAIIRTAEAVAADAVVLV 131

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +      +AV+ K+++GAL H+   ++ +L  AL+ +H    Q +    +++        
Sbjct: 132 EGKGSPVNAVVHKASAGALSHMRICKVKSLVRALELLHQCNVQVLAADMEAELNYTDADM 191

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A++LG EG G+ P+  +    +  + M G +++LNVS  A V LY
Sbjct: 192 KKSTAIVLGMEGSGIAPEALQFCDHVVRIPMAGCVESLNVSVTAGVLLY 240


>gi|225351944|ref|ZP_03742967.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157191|gb|EEG70530.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 288

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 30/225 (13%)

Query: 78  LARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNS 132
            AR+D  W  ++P    V    P+ + ++ G   +H+G   A++  PL  P+++ V R +
Sbjct: 71  FARIDQRWGTDIP----VYVASPEQLKQLTGYR-LHRGALAAMKRWPL--PSVEEVCRGA 123

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           + + V++++ D  N+GA++RSA A + D ++ T           A+ + G +  IP+ RI
Sbjct: 124 RRIAVMENIVDHTNVGALMRSAAALNVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRI 183

Query: 193 SNLTD------ALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILG 234
                       +Q++   GF T+ ++  D    LE+ ++            DK+ALI G
Sbjct: 184 GGDDKHYWPFTGMQELRDLGFTTVAMALEDDSISLEELVRRLNNDNGEKDHIDKLALIFG 243

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            EG GL   T   A     + M   + +LNV+ ++AVA Y T  H
Sbjct: 244 TEGDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFYSTAVH 288


>gi|239832469|ref|ZP_04680798.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239824736|gb|EEQ96304.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 279

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 7/208 (3%)

Query: 71  LLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125
           LL  +N LA L      LP   PV +VP   +D + G   VH+G LA+   +  P L   
Sbjct: 67  LLVLENRLAGLGEQLGQLPPDVPVYSVPQAVMDAVAGFH-VHRGILAVGRRKPQPGLEAM 125

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L A+    L++VL  +++  N+G+I R+A AF  D ++  +           + + GA  
Sbjct: 126 LGALPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGATL 185

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY    N+ + +  +    F  + LS  S   +    K D+ AL+LG EG+GL P+  
Sbjct: 186 KVPYFHGGNIDEIIAALGDANFNLLALSPSSTLSIYDAAKQDRHALLLGTEGEGLPPRLL 245

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
               + A + M     +LNV+ A+ +AL
Sbjct: 246 GKLQT-ARIPMSTAFDSLNVATASGIAL 272


>gi|146296390|ref|YP_001180161.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409966|gb|ABP66970.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 253

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 73/141 (51%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DPHN G+I+RSA      GIIT  R S   +  + K+++GA+EHI   R+ 
Sbjct: 95  FLVLLDEITDPHNFGSIIRSAHLCGAHGIITEARNSCPITPTVEKASAGAIEHIKVARVV 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   +  +   G       ++++K +        I +I+G+EGKG+    +E A  +  
Sbjct: 155 NLRRTIDSLKEKGVWVYAADNNAEKFVYDCDFKIPICIIIGSEGKGISRLVKEGADFLVK 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I + N S AA +  +
Sbjct: 215 IPQKGKINSYNASVAAGIIFF 235


>gi|160891918|ref|ZP_02072921.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
 gi|270296416|ref|ZP_06202616.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
 gi|317480388|ref|ZP_07939488.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
 gi|156858396|gb|EDO51827.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
 gi|270273820|gb|EFA19682.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
 gi|316903466|gb|EFV25320.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
          Length = 246

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHPF-PVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L  +  A L     PV+ VP + I+++  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINRVTR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     + L ++LD + D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFISSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   R S S +A   K+++GAL  +P  R  +L + LQ + + GF  +  +      
Sbjct: 124 DAVIIPARNSVSVNADAMKTSAGALHTLPVCREHSLKETLQFLKNSGFHIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE KG+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|223646822|gb|ACN10169.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
 gi|223672681|gb|ACN12522.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
          Length = 288

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 132/294 (44%), Gaps = 46/294 (15%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           +K S   F  +DS     +  HR+Y+                   L+GV     AL    
Sbjct: 6   RKLSLDDFPEEDSRERLSKEEHRNYET------------------LFGVSPCLLALTQGR 47

Query: 66  RKIFQLL-----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           R   +L      A++ A  R   +       P++ V    ++K+     VHQGL L+ + 
Sbjct: 48  RNAHRLFVKEGEASRRASVRQVCEEAHRQGVPIQRVSKNDLNKMCSG-GVHQGLCLQASC 106

Query: 121 LLSPTLDAV----RNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           L   T D      R+S    L +VLD V DP N+GAILRSA     D + ++ R S   +
Sbjct: 107 LGFLTDDKTSKPPRDSSHIPLWLVLDGVQDPMNLGAILRSAYFLGVDRVASSLRNSCPLT 166

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIA-- 230
            V++K++SG +E +      +LTD L+   + G+Q IG + ++++      +K  K    
Sbjct: 167 PVVSKASSGVMEVMRVYGYDSLTDMLKVKLAQGWQVIGTVGAEAENAHVPVMKCSKFQMT 226

Query: 231 ----LILGAEGKGLRPKTQETATSM------AHLHMPGIIKALNVSNAAAVALY 274
               L++G EG+GL  + +     M        LH PG +++LNVS A  + L+
Sbjct: 227 KPTLLLMGGEGEGLSRELRLQCEVMLTIIPRRDLH-PG-VESLNVSVATGILLH 278


>gi|239908534|ref|YP_002955276.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           magneticus RS-1]
 gi|239798401|dbj|BAH77390.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           magneticus RS-1]
          Length = 237

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 23/178 (12%)

Query: 111 HQGLA--LETAPL------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQG+   L   PL      L+  LDA    Q+++VLD V DP N+GA++R+  A    GI
Sbjct: 56  HQGVMARLAAGPLVSLEDVLAAGLDA--PLQVILVLDRVQDPGNVGALVRTLYALGGGGI 113

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K          AK+++G L  +P  +++NL+ AL      G+  IG +       E+
Sbjct: 114 LVPKHEGARLGPGAAKASAGTLARLPLAKVTNLSQALDAAKEAGYTVIGAAG------EE 167

Query: 223 EIKND-------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E +N         +AL+LG+E +G+RP  ++   ++  +     I +LNV+ A A+ +
Sbjct: 168 EAQNVHLAKPPFPLALVLGSEEEGIRPGIRKRCDALWRIPQARPIDSLNVAQAGAIMM 225


>gi|45644682|gb|AAS73070.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
           EBAC20E09]
          Length = 238

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 52  YGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           YG H++ + +NN    I +L + +     R+    +L   F +K      + K    EA+
Sbjct: 9   YGFHSIESIINNNPHTIKKLFIPSSRDDKRIHQLISLAEKFEIKYEISNKLKK--DPEAI 66

Query: 111 HQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                  +   L   ++   N  L +++LD++ DP N+G+ +RSA  +  D +I  K + 
Sbjct: 67  VANSETGSLKDLKVFIEDSSNLNLSILILDNIIDPRNLGSCIRSAAVYEIDALIINKHHC 126

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              + V    ++G  E I    +SNL + L+ +        GLS  ++K        +  
Sbjct: 127 APLNEVAHNVSAGGAELINIFYVSNLINCLKYLRKSNIDIYGLSEHAQKIYTSCDFTNSS 186

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           A+ILG+E  G+R KT E+   +  L++    K+ NVS A  + L
Sbjct: 187 AIILGSEESGMRQKTSESCDELIKLNLNKKFKSFNVSVATGIIL 230


>gi|88803487|ref|ZP_01119012.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
 gi|88780499|gb|EAR11679.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
          Length = 254

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 10/189 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           VP + ++++  K   HQG   + +P        L+  TL++     L ++LD ++D  N 
Sbjct: 58  VPIEKLNRL-SKNGNHQGAVAQISPVEFYDLEELIEKTLES-NKVPLFLLLDQLSDVRNF 115

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+A     +GII  K  S   +A   K+++GA   IP  ++ ++ DAL  + +   
Sbjct: 116 GAIIRTAECTGVNGIIIQKDGSAPVNAETIKTSAGAAFKIPICKVDHIKDALYILQAAEI 175

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +T+  +  ++  L     N  IA+++G+E +G+ P   +     A L + G I +LNVS 
Sbjct: 176 KTVAATEKTEDVLYDINLNQPIAIVMGSEQRGINPSILKMVDYKAKLPILGDIASLNVSV 235

Query: 268 AAAVALYIT 276
           A    LY T
Sbjct: 236 ACGAFLYET 244


>gi|217077820|ref|YP_002335538.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
           TCF52B]
 gi|217037675|gb|ACJ76197.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
           TCF52B]
          Length = 238

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 3/166 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           HQG+ ++           + + +   L++LD + DPHN GAI+R+AVA   D II  K  
Sbjct: 63  HQGVVVDIGEFEYKDESIIESLEKPFLVILDQLQDPHNFGAIIRTAVASGADAIIIPKNN 122

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S   +  + K + G +  I  I+  N+   ++ +   G    G  ++ K   + +++   
Sbjct: 123 SVQVTPTVVKVSVGTIFKINIIKTINIARFIKNIKEMGIWVYGADTNGKVYYKTDLRK-P 181

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           IA++LG EG G+RP  +E   ++  + M   +++LNVS +A + LY
Sbjct: 182 IAIVLGNEGAGIRPNVKEKCDALITIPMKNSVESLNVSVSAGILLY 227


>gi|19113497|ref|NP_596705.1| ribose methyltransferase [Schizosaccharomyces pombe 972h-]
 gi|74627042|sp|O94631|MRM1_SCHPO RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|4456828|emb|CAB37444.1| ribose methyltransferase [Schizosaccharomyces pombe]
          Length = 301

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 50/289 (17%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NL 87
           KK ++   K R   + ++ F++G H+V  AL    R+  + L  +NA    +++     L
Sbjct: 14  KKAKAHLSKERRLIKEDSEFVFGTHSVKNALATRKREC-RALYVQNADIHSEFEEFLNKL 72

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----------RNSQ---- 133
            +  P+K+V  + +++I      H G+ LE + L  PT+  +          +N Q    
Sbjct: 73  QYKIPIKSVNKEHLNQITACRP-HNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPH 131

Query: 134 ----------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                           L + +D + DP N+GA++RSA      GI+ +K+++   S V++
Sbjct: 132 NDLNEGKSSSSDNYPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVS 191

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKK------PLEQEIKNDK 228
           K+++GALE      + N    L+     G++ IG      D+K        ++ E+ N+ 
Sbjct: 192 KASAGALEVFNISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELMNEP 251

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNAAAVALY 274
             L+LG+E KGLR  T        ++ +PG    + +LNVS AA + LY
Sbjct: 252 KILVLGSE-KGLR--TNILTQCSHYVSIPGGDKYVDSLNVSVAAGILLY 297


>gi|291563601|emb|CBL42417.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
           SS3/4]
          Length = 248

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L +LD + DPHN+GAI+R+A      G+I  KR +   +A +A++++GAL + P  +++
Sbjct: 99  FLFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVT 158

Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           N+   ++ +   G  F    +  +S   L        I L++G EG+G+    +E    +
Sbjct: 159 NMAATIEDLKKRGIWFVCADMGGESMYRLNL---TGPIGLVIGNEGEGVSRLVKEKCDMI 215

Query: 252 AHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
           A + M G I +LN S A  V  Y I +   AK
Sbjct: 216 ASIPMKGDIDSLNASVATGVLAYEIVRQRLAK 247


>gi|148726030|emb|CAN88076.1| novel protein similar to vertebrate mitochondrial rRNA
           methyltransferase 1 homolog (S. cerevisiae) (MRM1)
           [Danio rerio]
          Length = 321

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 40/267 (14%)

Query: 41  RHTSQP----ENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHP 90
           R  SQP    E   ++GV     AL    R    L         ++A+ R+  +A +   
Sbjct: 52  RKDSQPNQDKEFEIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEA-IRRG 110

Query: 91  FPVKTVPPQTIDKIV-GKEAVHQGLAL---------ETAPLLSPTLDAVRNSQLLMVLDH 140
             +K V  QT++K+  GK  VHQGL L         E  P+ S  L+      L +VLD 
Sbjct: 111 VQIKRVNKQTLEKMCDGK--VHQGLCLQASCLGFIKEERPITS--LEVKNQRPLWLVLDG 166

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+GAILRSA     D I+++   S   +  ++K+++G +E +     SNL   ++
Sbjct: 167 VQDPMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIK 226

Query: 201 KMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMA- 252
                G+Q   T+GL   S +       + K++    L++G EG GL  + ++    +  
Sbjct: 227 VKVEEGWQVVGTVGLEEGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLIT 286

Query: 253 -----HLHMPGIIKALNVSNAAAVALY 274
                H+H PG +++LNVS A  + L+
Sbjct: 287 IPPRRHMH-PG-VESLNVSVATGILLH 311


>gi|34556873|ref|NP_906688.1| hypothetical protein WS0446 [Wolinella succinogenes DSM 1740]
 gi|34482588|emb|CAE09588.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 257

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 14/169 (8%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG  +E   +   +L  ++    L+VL  V+D  NIG I RSA     +G+I T   S 
Sbjct: 88  HQGFLMEIEAISPLSLGEIKRVDRLLVLHGVSDSGNIGGIFRSAYCLGMEGVILTNLSSF 147

Query: 171 S-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           S ESA+  +++SGAL  +P+  + N  D + ++   GF   G +      LE EI N K 
Sbjct: 148 SIESAI--RTSSGALLELPFGIVKNPWDLINELRGAGFTLYGAA------LEGEIPNGKS 199

Query: 230 -----ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                AL +G+EG+GL  K       +  + M     +LNV  AAA+ +
Sbjct: 200 FASKRALFMGSEGEGLPKKLLSKLDQLLKIEMERDFDSLNVGVAAAILM 248


>gi|194333376|ref|YP_002015236.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
           aestuarii DSM 271]
 gi|194311194|gb|ACF45589.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
           aestuarii DSM 271]
          Length = 243

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 11/236 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKI----FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           N  +YG ++V   LN    +I    FQ   + N L  +   A   H   V     + + +
Sbjct: 2   NNVVYGRNSVLELLNATPERIEKIYFQFNTSHNKLKEITITAR-RHRIAVGKARLEKLSE 60

Query: 104 IVGKEAVHQGLALETAPL----LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFS 158
           I G    HQG+    + +    +   L+  RNS  L+++L  + DP+NIGAI+RSA A +
Sbjct: 61  IAGTTK-HQGVCALISTINYYDIEEILEKPRNSNPLIVILPGLQDPYNIGAIIRSAEAVA 119

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++  +      +A + K+++GAL H+   ++ +L   L+ + S  FQ +     +++
Sbjct: 120 ADAVVLVEGKGSPVNATVHKASAGALPHMRVCKVKSLKKCLELLRSKKFQIVAADMHAER 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                      ALI+G EG+GL     E   ++  L M G I++LNVS  A V LY
Sbjct: 180 NYTDIDFTRPSALIMGEEGRGLGTGLLEEQDAIVRLPMAGCIESLNVSVTAGVLLY 235


>gi|163814438|ref|ZP_02205827.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
 gi|158450073|gb|EDP27068.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
          Length = 301

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 9/190 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149
            PV T   + + K+ G  A+ +GL       + P+ + V  ++  + VL++V +P N+GA
Sbjct: 110 IPVYTAEYEVLKKLTGF-ALIRGLLCAMRRKVLPSPEGVCSDAHRIAVLENVMNPINVGA 168

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ T   S       A+ + G +  IP+  I ++T  +  +H+ GF+T
Sbjct: 169 IFRSAAALGMDAVLLTGGCSDPLYRRSARVSMGTVFQIPWTYIGDMTAGMDILHAMGFKT 228

Query: 210 IGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             +     + D   P  +E+  +K+A+ILG EG+GL+  T   +     + M   + +LN
Sbjct: 229 ASMALRNDTIDINDPRLKEV--EKLAVILGTEGEGLKTSTIYASDFTIKIPMFHGVDSLN 286

Query: 265 VSNAAAVALY 274
           V+ A+AVA +
Sbjct: 287 VATASAVAFW 296


>gi|238923821|ref|YP_002937337.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238875496|gb|ACR75203.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|291524576|emb|CBK90163.1| rRNA methylase, putative, group 3 [Eubacterium rectale DSM 17629]
          Length = 255

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG +A+  A   +   D + N++       +++LD + DPHN+GAI+R+A      GII
Sbjct: 75  HQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHGII 134

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  +AK+++GA+ + P  +++N+++ ++++   G   +          +  
Sbjct: 135 IPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCADMGGTTMYDLN 194

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    I L++G EG G+    +E     A + M G I +LN S A  V  Y
Sbjct: 195 LTG-PIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVLAY 244


>gi|300770796|ref|ZP_07080674.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762353|gb|EFK59171.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 259

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 15/262 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PH 89
           MQ+F +  R   +  N  ++G+  V  A+++  ++I  L   +     L  +       H
Sbjct: 1   MQNFQRHDRSEKRESNQMVFGIRAVIEAIDS-GKEIESLFVQRGLGGSLFLELKSLIKEH 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVN 142
               + VP + +++I  K   HQG+    +P+       L P +     + L+++LD V 
Sbjct: 60  EIGFQQVPIEKLNRITRKN--HQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GAI R+A       II  K+ S   +    K+++GAL  IP  R  NL    + +
Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +  +  +++ +          +I+GAE  G+       +  +A + M G I +
Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDIGVSDDLIRISDHLAKIPMFGEIGS 237

Query: 263 LNVSNAAAVALY--ITQNHFAK 282
           LNVS +A V LY  I Q    K
Sbjct: 238 LNVSVSAGVVLYEAIRQRQITK 259


>gi|291528003|emb|CBK93589.1| rRNA methylase, putative, group 3 [Eubacterium rectale M104/1]
          Length = 255

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 111 HQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG +A+  A   +   D + N++       +++LD + DPHN+GAI+R+A      GII
Sbjct: 75  HQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAHGII 134

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +  +AK+++GA+ + P  +++N+++ ++++   G   +          +  
Sbjct: 135 IPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCADMGGTTMYDLN 194

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    I L++G EG G+    +E     A + M G I +LN S A  V  Y
Sbjct: 195 LTG-PIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVFAY 244


>gi|317124938|ref|YP_004099050.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
 gi|315589026|gb|ADU48323.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
          Length = 251

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 3/185 (1%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGA 149
           V++ P + + K+ G     QG+ A   AP + P   A+ ++ L  ++VLD +  P N+G 
Sbjct: 59  VQSAPAERVKKLAGNGRQDQGVFADVVAPRMLPLEVAIDHADLRTVLVLDGITTPANVGM 118

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILRSA A   DGI+  +R   S   ++ K+++G     P ++     +A+  +   GF  
Sbjct: 119 ILRSATAAGIDGIVVPRRGVASIDPLVVKASAGIAFRAPILKTFTAVEAVTALKEAGFHI 178

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +GL +D    L      +++A++LG+E  G  P+      +   + M G +++LNVS AA
Sbjct: 179 VGLDADGDDDLFTAHLRERVAVVLGSETAGHGPEVARLVDTWVSIPMTGGVESLNVSAAA 238

Query: 270 AVALY 274
           AV  +
Sbjct: 239 AVVCF 243


>gi|227545915|ref|ZP_03975964.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227213549|gb|EEI81398.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 292

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 32/221 (14%)

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140
           W A++P    V    P+ + ++ G   +H+G   A+   PL S   +  ++++ + V+++
Sbjct: 78  WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCKSARRVAVMEN 131

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--- 197
           + D  N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   
Sbjct: 132 IVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGT 191

Query: 198 ---------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236
                     + ++ S GF T+ ++ + +             P E     DK+ALI G E
Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTE 251

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GL   T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 252 GDGLSHHTISRADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|119192340|ref|XP_001246776.1| hypothetical protein CIMG_00547 [Coccidioides immitis RS]
          Length = 495

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 121/305 (39%), Gaps = 89/305 (29%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPP 98
           F+YG H V +A+    RKI+ L   +           N+L +L   A       VK V  
Sbjct: 140 FIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAK----VKIVSS 195

Query: 99  QTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQL---------------------- 134
           +    +  V KE  HQG+  E +PL  P L A+   Q+                      
Sbjct: 196 EWSQALSRVCKEVNHQGIVAEVSPL--PKLPALSYEQVASLPVTNFNVKVAPQSKEEAAV 253

Query: 135 ------------------------------LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                                          ++LD + DPHN+GAILRSA  F  D +  
Sbjct: 254 NGTSGLIPLTSLRQNSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAF 313

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGF----QTIGLSSDSK- 217
           + R S   S V+ KS+SGA EHIP I I +    +   + + W F        ++ DSK 
Sbjct: 314 SSRNSAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKN 373

Query: 218 ------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GIIKALNVS 266
                 K L  E++N    L+LG EG GL  + +  A +   +  P       + +LNV+
Sbjct: 374 KNIVSSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVA 433

Query: 267 NAAAV 271
            A+ +
Sbjct: 434 VASGI 438


>gi|255690061|ref|ZP_05413736.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
           DSM 17565]
 gi|260624338|gb|EEX47209.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
           DSM 17565]
          Length = 247

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+         +    L P L     +   ++LD V D  N GAI R+    + 
Sbjct: 66  KN--HQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   R S S +A   K+++GAL  +P  R  +L   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPARGSASVNADAVKTSAGALHTLPVCREQSLRSTLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE  G+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|309811775|ref|ZP_07705549.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308434196|gb|EFP58054.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 268

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 5/188 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            PV       I+ + G   +H+G LA    P L+   + +R+++ ++VL+ + D  N+GA
Sbjct: 78  VPVYVGEADVIESMTGFH-LHRGALASMNRPALALPEELLRDARRVVVLEDIVDHTNVGA 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH--SWGF 207
           I RSA A   D ++ T R +        + + G +  +P+ RI     ++ ++    W  
Sbjct: 137 IFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPGSVTRLQEAGWTV 196

Query: 208 QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             + L+ DS    E   +  +++AL++G EG GL  +T         + M G + +LNV+
Sbjct: 197 AAMALADDSVTLDELAAREPERLALVMGTEGDGLGTRTVAACDVTVRIPMAGGVDSLNVA 256

Query: 267 NAAAVALY 274
            A+AVA+Y
Sbjct: 257 AASAVAMY 264


>gi|253579510|ref|ZP_04856779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849011|gb|EES76972.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 245

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 27/206 (13%)

Query: 92  PVKTVPPQ-----TIDKIVGKE--------AVHQGLALETAPLLSPTLDAV-------RN 131
           PV+T+  +     TI   V KE          HQG+  + A     +++ +         
Sbjct: 34  PVRTIAREARKKDTIINYVAKERLDQLSETGAHQGVIAQVAAYEYASVEDILAKAREKGE 93

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              + +LD++ DPHN+GAI+R+A      G+I  KR +   ++ +AK+++GAL + P  +
Sbjct: 94  DPFIFILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKTSAGALNYTPVAK 153

Query: 192 ISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           ++NL    D L++   W F    +  ++   L        I +++G EG+G+    +E  
Sbjct: 154 VTNLGHTIDELKEQGMW-FVCADMGGETMYNLNL---TGPIGVVIGNEGEGVSRLIREKC 209

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +A + M G I +LN S AA V  Y
Sbjct: 210 DFVASIPMKGDIDSLNASVAAGVLGY 235


>gi|303312903|ref|XP_003066463.1| RNA methyltransferase, TrmH family, group 3 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106125|gb|EER24318.1| RNA methyltransferase, TrmH family, group 3 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 495

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 121/305 (39%), Gaps = 89/305 (29%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFPVKTVPP 98
           F+YG H V +A+    RKI+ L   +           N+L +L   A       VK V  
Sbjct: 140 FIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAK----VKIVSS 195

Query: 99  QTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQL---------------------- 134
           +    +  V KE  HQG+  E +PL  P L A+   Q+                      
Sbjct: 196 EWSQALSRVCKEVNHQGIVAEVSPL--PKLPALSYEQVASLPVTNFNVKVAPQSKEEAAV 253

Query: 135 ------------------------------LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                                          ++LD + DPHN+GAILRSA  F  D +  
Sbjct: 254 NGTSGLIPLTSLRQDSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAF 313

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGF----QTIGLSSDSK- 217
           + R S   S V+ KS+SGA EHIP I I +    +   + + W F        ++ DSK 
Sbjct: 314 SSRNSAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKN 373

Query: 218 ------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GIIKALNVS 266
                 K L  E++N    L+LG EG GL  + +  A +   +  P       + +LNV+
Sbjct: 374 KNIVSSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVA 433

Query: 267 NAAAV 271
            A+ +
Sbjct: 434 VASGI 438


>gi|225377115|ref|ZP_03754336.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
           16841]
 gi|225211020|gb|EEG93374.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 8/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     +++I G +     L     P +       +N++ + VL++V +P N+GAI
Sbjct: 91  IPVYTAKLGVLEQITGYKLARGMLCAMHRPAMPSAEKVCKNARRIAVLENVVNPTNVGAI 150

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT-----DALQKMHSW 205
            RSA A + D ++ T   S        + + G +  +P+  I N         +  +H +
Sbjct: 151 FRSAAALNMDAVLLTSACSDPLYRRAIRVSMGTVFQVPWTYIENKNVSWPQGGMDLLHEY 210

Query: 206 GFQTI--GLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF+T+   L +DS +  ++++   +K+A+ILG EG GL  +T         + M   + +
Sbjct: 211 GFKTVAMALRNDSVRIDDEKLHAEEKLAIILGTEGDGLAAETMADCDYTVKIPMSHGVDS 270

Query: 263 LNVSNAAAVALY 274
           LNV+ A+AVA +
Sbjct: 271 LNVAAASAVAFW 282


>gi|71893988|ref|YP_279434.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
 gi|71852115|gb|AAZ44723.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 233

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 5/193 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           VK V    +DK+V     HQG    LE               +++++LDH+ D +N+G I
Sbjct: 40  VKIVSRDFLDKLV--RLNHQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNI 97

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A  F    II  KR +   +    K +SG    + +I ++++  A+ K+    F   
Sbjct: 98  IRTANCFGIKHIILPKRRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIY 157

Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                 K    QEI+ N   A+ILG EG G++  +   +     + + G + +LNV+ A 
Sbjct: 158 ATDLKEKSRKIQEIQFNYPCAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVAT 217

Query: 270 AVALYITQNHFAK 282
            + L+  + +  K
Sbjct: 218 GIILFFLKQNIKK 230


>gi|297618403|ref|YP_003703562.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 250

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 76/141 (53%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD V DP N+GAI+R+A      GI+    +S   +  + ++++GA+EH+    ++
Sbjct: 96  FLILLDGVEDPQNLGAIIRTAECAGVHGIVLPLHHSVKVTPAVGRASAGAVEHMKIALVT 155

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  A++++   G   +G  + +     +      +AL+ G EG+G+R   +E    +  
Sbjct: 156 NLVRAIEELKQGGLWIVGADAMANHTYFEVSLAAPLALVFGGEGRGIRRLVREHCDILVS 215

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G + +LNVS A A+  +
Sbjct: 216 IPMFGQLNSLNVSTACALVTF 236


>gi|45657881|ref|YP_001967.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601122|gb|AAS70604.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 220

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLL-------MVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    AP    T D     + L       ++LD + DP N+G ILR+A  F    II
Sbjct: 42  HQGIVALKAPSKQTTFDKKNLEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNII 101

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R S   + V+ K ASGAL  +    + NL + L+ +   G+  +  S    +   + 
Sbjct: 102 LPERESAGITPVVEKVASGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSKL 161

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +++ +++G EG+G++    E +  +  + M G + +LNV+ A  + L
Sbjct: 162 PDLNELVILMGNEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVL 211


>gi|23335009|ref|ZP_00120247.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|23465439|ref|NP_696042.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|189439462|ref|YP_001954543.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|312132870|ref|YP_004000209.1| spou1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482198|ref|ZP_07941220.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690946|ref|YP_004220516.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|23326090|gb|AAN24678.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
           NCC2705]
 gi|189427897|gb|ACD98045.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|311773840|gb|ADQ03328.1| SpoU1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916336|gb|EFV37736.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455802|dbj|BAJ66424.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 292

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 32/221 (14%)

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140
           W A++P    V    P+ + ++ G   +H+G   A+   PL S   +  ++++ + V+++
Sbjct: 78  WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCKSARRVAVMEN 131

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--- 197
           + D  N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   
Sbjct: 132 IVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGT 191

Query: 198 ---------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236
                     + ++ S GF T+ ++ + +             P E     DK+ALI G E
Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTE 251

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GL   T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 252 GDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|242281274|ref|YP_002993403.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           salexigens DSM 2638]
 gi|242124168|gb|ACS81864.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           salexigens DSM 2638]
          Length = 251

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 9/169 (5%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+    A L        L+ + +S L  L+VLD V DP N+G + RS  A    GI+T
Sbjct: 74  HQGVIARVAALPFADFDDMLENLADSPLPLLVVLDQVQDPGNVGVLARSLYALGGAGIVT 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQ 222
            K           K+++GAL  +P  R++N++ AL K    G      GL  DS      
Sbjct: 134 AKHGGAFLGPAAVKASAGALNKLPVARVNNISQALDKAIDMGINIYGAGLDDDSSSAYTA 193

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           EI    I L+LG E KG+R   ++    + H+       +LNV+ A A+
Sbjct: 194 EIHTPAI-LVLGNEEKGIRFNVEKRCQKLIHIPFRRDFDSLNVAQAGAM 241


>gi|15828649|ref|NP_326009.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089591|emb|CAC13351.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 229

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 31/238 (13%)

Query: 49  LFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVG 106
           L L G ++V  AL NN   ++  +LA+K             H F  +K +  +  DK   
Sbjct: 4   LMLCGKNSVLDALENNVKIEMLYVLASK------------VHEFKHIKNIKIEVKDKQFL 51

Query: 107 KEAV---HQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              V   HQG       L   +LD  +++ + +++LDH+ DP+N GAILRSA AF    I
Sbjct: 52  DSLVKENHQGYVAVLKSLNFVSLDQMIKSKETILILDHLEDPYNFGAILRSANAFGIKNI 111

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           I   + +   ++ + K +SG   ++ + +   IS   D L+K   W      + S S  P
Sbjct: 112 IYPIKRAVDINSTVLKVSSGGFVNLRFYKSNSISATIDKLKKQGYW------IYSSSLDP 165

Query: 220 LEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             ++I     N+   L++G E KG+   T++ +  + ++   G +++LN S AA +  
Sbjct: 166 TSEDINKISFNNPSVLVIGNEKKGISQTTKKQSDQLFYIKTKGSVQSLNASVAAGIIF 223


>gi|256073948|ref|XP_002573289.1| rRNA methylase [Schistosoma mansoni]
 gi|238658466|emb|CAZ29521.1| rRNA methylase, putative [Schistosoma mansoni]
          Length = 338

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 126/307 (41%), Gaps = 76/307 (24%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------- 87
           F  ++R +S+     LYG+H V  AL    R I++L   K+ L+      NL        
Sbjct: 18  FLGRTRQSSE----LLYGIHPVLCALTFRHRDIYRLYV-KDTLSNCKDPDNLVEISTFQI 72

Query: 88  -----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL------- 135
                 +  PV  VP + + ++    A HQG+ LE +P    ++  +    LL       
Sbjct: 73  TEKALKYGIPVTRVPVEKLKELSNSRA-HQGVILEVSPTTIQSISDLSIKNLLFSWNNLS 131

Query: 136 --------------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                         ++LDH+ D  N G ILRSA  F    +I +     S S +++K + 
Sbjct: 132 GNLPYAKKYHRPTVLLLDHMMDTMNFGNILRSAAFFGISAVILSTSPCVSPSPLISKISV 191

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-------------KPLEQEIKNDK 228
           GA+E I + R+++    ++ + + GF  +G   +S+             KP E    ND 
Sbjct: 192 GAMESILFYRLTDTVMDMKSLSNAGFLIVGTCGESQLPSSKVSKSTDLLKPDEVGANNDN 251

Query: 229 -------IALILGAEGKGLRPKTQETATSMAHLHMPG--------------IIKALNVSN 267
                  + L LG+E +GL      +   +  L +PG              I  +LNVS 
Sbjct: 252 TGVYPRPLILALGSESRGLSENVLNSCDLL--LRIPGYGDSTKLNQCISQTIPSSLNVSV 309

Query: 268 AAAVALY 274
           AA + LY
Sbjct: 310 AAGILLY 316


>gi|118384277|ref|XP_001025291.1| RNA methyltransferase, TrmH family protein [Tetrahymena
           thermophila]
 gi|89307058|gb|EAS05046.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
           SB210]
          Length = 293

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 120/246 (48%), Gaps = 25/246 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTID 102
           F+YG++    AL++  R I +++  ++        ++ +   AN     PVK V  + +D
Sbjct: 37  FVYGLNPTMIALHSNKRNIVEVIINQHVQSHLPPKISNIINTAN-AKKIPVKFVDREKLD 95

Query: 103 KIVGKEAVHQGLALETAPL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           ++V  +  HQ + ++  PL  L      +    +++ LD + DP N GAI+R+      D
Sbjct: 96  RLVQNQP-HQNVVIKAEPLKYLRTKSSDILQGNMILFLDRITDPQNFGAIIRTCQYLGVD 154

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKK 218
            ++  +      +  ++K++SGALE +      +  + L+  ++  W   + GL+  S+ 
Sbjct: 155 NVVVDEFSRCPLNPTVSKTSSGALEVMDIYCTPDPVEFLKDCQLRGWKVYSTGLNH-SEN 213

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMA------HLHMPGI-----IKALNVSN 267
            +  E   DKI L++G EG G+ PK  + +  +       +L+ P +     I +LNV++
Sbjct: 214 QISLEKLKDKIVLVMGNEGNGVDPKILKVSDKIVSIDQTLYLNRPMVFPYTLIDSLNVNS 273

Query: 268 AAAVAL 273
           A ++ +
Sbjct: 274 ATSILI 279


>gi|311113579|ref|YP_003984801.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
 gi|310945073|gb|ADP41367.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
          Length = 290

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 5/183 (2%)

Query: 99  QTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + +++I G   +H+G LA    P      D +  +  + +L+ + D  N+GAI RSA A 
Sbjct: 106 EELERITGFH-LHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNVGAIFRSAAAL 164

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++ T R +        + + G +  +P+ RI+     L+ +H  GF++  L+ D  
Sbjct: 165 GVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGFESAALALDED 224

Query: 218 KPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ++   ++ K+ALILG EG GL P T         + M   + +LNV+ A+AVA +
Sbjct: 225 SLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLNVAAASAVAFW 284

Query: 275 ITQ 277
            T+
Sbjct: 285 ETR 287


>gi|255036422|ref|YP_003087043.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
           DSM 18053]
 gi|254949178|gb|ACT93878.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
           DSM 18053]
          Length = 256

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 9/190 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDP 144
           P + VP + ++++  K   HQG+    +P+    L   L  V     + LL++LD V D 
Sbjct: 61  PYQRVPVEKLNRVTRKN--HQGVIAFVSPIQYMPLHNVLTQVYEDGKTPLLLLLDRVTDV 118

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N GAI R+A       II   +     +A   K++SGAL  +P  R  NL + L  + +
Sbjct: 119 RNFGAIARTAECAGVQAIIVPTKGGAQINADAMKTSSGALNFLPICREPNLYETLTYLRN 178

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q I  +  + K L          +I+G+E  G+  +  + A S A + + G +++LN
Sbjct: 179 SGLQIIACTEKTDKSLYDIDFTVPTVIIMGSEEDGISKEFIDLADSGARIPLAGQVESLN 238

Query: 265 VSNAAAVALY 274
           VS A++V LY
Sbjct: 239 VSVASSVVLY 248


>gi|332652352|ref|ZP_08418097.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332517498|gb|EGJ47101.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 278

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 17/202 (8%)

Query: 87  LPHPF---PVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           LP P+   P+ T P   + ++ G E     L A+   PL SP  +  R+++ L+VL+++ 
Sbjct: 72  LPPPWDNIPIYTAPRDVLARLTGYELTRGMLCAMRRPPLPSPE-EICRSARRLVVLENIT 130

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-- 200
           D  NIGAI RSA A   DG++ +            + + G +  IP+  +    DA Q  
Sbjct: 131 DSTNIGAIFRSAAALGMDGVLVSSSCCDPLYRRSVRVSMGTVFQIPWTWLHG--DAFQWP 188

Query: 201 -----KMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMA 252
                 + S GF T  ++ +D+   +E  +  D  K+A++LG+EG GL  +T       A
Sbjct: 189 QPGIATLRSLGFSTAAMALTDNSISIEDPVLADAEKLAIVLGSEGNGLCEETIAHCDYTA 248

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M   + +LNV+ A AV  +
Sbjct: 249 RIPMYHGVDSLNVAAAGAVIFW 270


>gi|229825690|ref|ZP_04451759.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
           49176]
 gi|229790253|gb|EEP26367.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
           49176]
          Length = 259

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    A      +   L+A +  +    ++VLD + DPHN+GAI+R+A      G+I
Sbjct: 80  HQGVVAMAAAYNYAEVEDILNAAKEKEEPPFIIVLDDIEDPHNLGAIIRTANQAGAHGVI 139

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR++   +A +A++++GA+ + P  +++N++  ++++   G      +  S + +   
Sbjct: 140 IPKRHAVGLTATVARTSAGAINYTPVAKVTNISRTIEELKEKGIW-FACADMSGELMYNC 198

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                I L++G+EG G+    +E    +  + M G I +LN S AA V  Y
Sbjct: 199 NLTGAIGLVIGSEGSGVSRLVKEKCDFVVKIPMFGQIDSLNASVAAGVLSY 249


>gi|294628391|ref|ZP_06706951.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
 gi|292831724|gb|EFF90073.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
          Length = 272

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 7/178 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           PV    P   +++ G   VH+G   A++  PL +   D +R ++ + V++ VND  NIGA
Sbjct: 78  PVYVAAPDIAEQVTGYH-VHRGALAAMQRKPLPA-AADVLRTARRVAVMESVNDHTNIGA 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ +   +        K + GA+  +PY R+      L+ + + GF  
Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDRWPGDLEPVRAAGFTL 195

Query: 210 IGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + L+   + KPL++    + D++AL+LGAEG GL  +    A     + M   I +LN
Sbjct: 196 LALTPHERAKPLDEVAPHRMDRVALLLGAEGTGLSQRALSAADEWVRIPMSHGIDSLN 253


>gi|24214562|ref|NP_712043.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|24195527|gb|AAN49061.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
          Length = 220

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLL-------MVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    AP    T D     + L       ++LD + DP N+G ILR+A  F    II
Sbjct: 42  HQGIVALKAPSKQTTFDKKNLEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNII 101

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R S   + V+ K ASGAL  +    + NL + L+ +   G+  +  S    +   + 
Sbjct: 102 LPERESAGITPVVEKVASGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSKL 161

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +++ +++G EG+G++    E +  +  + M G + +LNV+ A  + L
Sbjct: 162 PDLNELVILMGNEGEGIKRILMEKSDFVLRIPMHGNLSSLNVTVATGIVL 211


>gi|328949218|ref|YP_004366555.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           succinifaciens DSM 2489]
 gi|328449542|gb|AEB15258.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           succinifaciens DSM 2489]
          Length = 258

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 5/144 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHIPYIR 191
           +++VLD V DPHN+GAILRS   F    ++     S   + + ++A++++GA   +   +
Sbjct: 108 VVIVLDSVTDPHNVGAILRSCDQFGASLMVVPDHRSADINNNEIIARASAGASSWVDVAK 167

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS 250
           + NL  A+Q + S GF   G  +D+      +IK   K  +I+G+EG G+    QE    
Sbjct: 168 VPNLVRAVQILKSAGFWIYG--ADAGGTTLSKIKFPKKTCIIMGSEGSGIARLLQEQCDE 225

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G I +LNVS AA V LY
Sbjct: 226 IVSIPTCGKIDSLNVSVAAGVLLY 249


>gi|300722282|ref|YP_003711566.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628783|emb|CBJ89361.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 357

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 10/169 (5%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           GL +ET    +P  D V      + L++V +PHN+GAI+RS   F   G++  +  +  E
Sbjct: 194 GLGVETYLQQAPAKDCV------LALENVGNPHNLGAIMRSCAHFGVQGVV-LQDTAMLE 246

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIAL 231
           S    ++A G  EHI  I     TD L K  + G+  +  SS      L Q    +K+ L
Sbjct: 247 SGAAVRTAEGGAEHIKGIDADGFTDTLNKFRNEGYTIVTTSSHKGSTALAQATLPEKMVL 306

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +LG E  GL     E       +   G +++LNVS A  + L  +  QN
Sbjct: 307 VLGQESDGLSDSIWEDGDIRLSIGGTGRVESLNVSVATGILLAEWWRQN 355


>gi|300741487|ref|ZP_07071508.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300380672|gb|EFJ77234.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 273

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 5/183 (2%)

Query: 99  QTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + +++I G   +H+G LA    P      D +  +  + +L+ + D  N+GAI RSA A 
Sbjct: 89  EELERITGFH-LHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNVGAIFRSAAAL 147

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++ T R +        + + G +  +P+ RI+     L+ +H  GF++  L+ D  
Sbjct: 148 GVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGFESAALALDED 207

Query: 218 KPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ++   ++ K+ALILG EG GL P T         + M   + +LNV+ A+AVA +
Sbjct: 208 SLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLNVAAASAVAFW 267

Query: 275 ITQ 277
            T+
Sbjct: 268 ETR 270


>gi|225026002|ref|ZP_03715194.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
 gi|224956652|gb|EEG37861.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
          Length = 251

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 24/213 (11%)

Query: 92  PVKTVPPQ-----TIDKIVGKEAV--------HQGL-ALETAPLLSPTLDAVRNSQ---- 133
           P+K++  +     T+ K V KE +        HQG+ A+  A   +   D  + ++    
Sbjct: 41  PIKSILREARKRDTLIKFVSKEKLDSLSFHEKHQGVVAIAAAYEYATVEDLFKKAEEKGE 100

Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++ D + DPHN+GAI+R+A      G+I  KR +   ++ +AK ++GAL + P  R
Sbjct: 101 APFFILCDEIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTSTVAKVSAGALNYTPVAR 160

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250
           ++NL+  + ++   G   +    D    L  ++     I LI+G EG G+    +E    
Sbjct: 161 VTNLSRTIDELKDKGMWFV--CGDMGGELMYDLNLTGSIGLIIGNEGNGVSRLVKEKCDY 218

Query: 251 MAHLHMPGIIKALNVSNAAAV-ALYITQNHFAK 282
           +A + M G I +LN S A  V A  I +    K
Sbjct: 219 IASIPMKGDIDSLNASVATGVLAFEIVRQRMGK 251


>gi|298207714|ref|YP_003715893.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83850351|gb|EAP88219.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 245

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 8/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIG 148
           VP   I+K+  K   HQG   + AP+     +   N       S + ++LD ++D  N G
Sbjct: 54  VPEIKIEKL-SKGRNHQGAVAKVAPISFQDFEITINRIIKDIESPIFLMLDQISDTRNFG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R+A       II +K  S   +A   K+++GA+ +IP  ++ ++ DA+  + S   +
Sbjct: 113 AIVRTAECTGVSAIIISKTGSAPITADAVKTSAGAIFNIPICKVDHIKDAIYYLQSCDVK 172

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +  +   +         ALI+G+EG+G+ P   +     A L + G I++LNVS A
Sbjct: 173 IVAATEKTDNTIYDVPLTGSHALIMGSEGRGINPSVLKIVDYKAKLPLLGKIESLNVSVA 232

Query: 269 AAVALY 274
               LY
Sbjct: 233 TGAFLY 238


>gi|320031639|gb|EFW13599.1| SpoU rRNA methylase [Coccidioides posadasii str. Silveira]
          Length = 472

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 54/276 (19%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-----------NALARL-------------DWDA 85
           F+YG H V +A+    RKI+ L   +           N+L +L             +W  
Sbjct: 140 FIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEWSQ 199

Query: 86  NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNSQ-------- 133
            L      V ++P    +  V  ++  +     T+   PL S   D+  + +        
Sbjct: 200 ALSRVCKEVASLPVTNFNVKVAPQSKEEAAVNGTSGLIPLTSLRQDSYDDHRTQHNPRYP 259

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DPHN+GAILRSA  F  D +  + R S   S V+ KS+SGA EHIP I I 
Sbjct: 260 FTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHIPLISIH 319

Query: 194 NLTDALQ--KMHSWGF----QTIGLSSDSK-------KPLEQEIKNDKIALILGAEGKGL 240
           +    +   + + W F        ++ DSK       K L  E++N    L+LG EG GL
Sbjct: 320 DTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLGNEGDGL 379

Query: 241 RPKTQETATSMAHLHMP-----GIIKALNVSNAAAV 271
             + +  A +   +  P       + +LNV+ A+ +
Sbjct: 380 SKELKSKADASVVVDCPRKHIVDEVDSLNVAVASGI 415


>gi|313625381|gb|EFR95171.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           J1-023]
          Length = 201

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 84/153 (54%), Gaps = 15/153 (9%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q I+K+V     HQG+A + A      LD       A       ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             W F T    S   + ++ ++    +A+++G+
Sbjct: 172 GLWIFGTDAKGSSDYRTMDVDM---PLAIVIGS 201


>gi|152991299|ref|YP_001357021.1| RNA methyltransferase [Nitratiruptor sp. SB155-2]
 gi|151423160|dbj|BAF70664.1| RNA methyltransferase, TrmH family [Nitratiruptor sp. SB155-2]
          Length = 227

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 12/227 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID----KI 104
           + +YG       +++ S  I ++L  KN       DA + +      V  + ID    + 
Sbjct: 1   MIVYGKQIFHYIIDHHSHIIQRILLNKNV------DAGVWNKLQRLGVKIERIDNKKAQA 54

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG  LE    +    + V+N   L++L +V D  NIG+I+RSA A   DG++ 
Sbjct: 55  LAKGGNHQGFLLEIEDYVFTPFEVVKNFDFLVLLYNVTDIGNIGSIVRSAYALGVDGLVI 114

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +         V+ +S+  AL+ +P     NL DA++++    F         +    +  
Sbjct: 115 SGLKDLKMEGVIRRSSGAALD-LPIALQFNLYDAIKELQDRNFLVYAADMQGEDVRTKRF 173

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + K A++LG+EG+G+  K  +    +  + M     +LNV+ AAA+
Sbjct: 174 -HGKRAILLGSEGEGVPKKAVQKCNEILKIEMKRDFDSLNVAAAAAI 219


>gi|116872590|ref|YP_849371.1| rRNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741468|emb|CAK20592.1| rRNA methyltransferase, TrmH family [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 252

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 119/248 (47%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  AL      + +LL +       +W   L
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEW---L 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V  +  + I  ++ +    QG+      +  P +  +   +LL+V D V DP N+
Sbjct: 65  KGDYDVFEISAE-ISHLISETMTEQGV-FAVVTISEPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D +I  +  +   +  + +S  G+  HIP I+ ++L D +  +   G 
Sbjct: 122 GTLIRTADAAGYDCVILGRGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFDWIANLEEEGV 180

Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG   D + K L    K + +AL++G EG G+ P+ QE  +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDEQAKSLNDMPKRETLALMVGNEGNGISPELQERLSEKVYIPIYGDSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|227873419|ref|ZP_03991674.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
 gi|227840724|gb|EEJ51099.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
          Length = 249

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 111 HQGL-----ALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQG+     A E APL    L   ++   +    +LD + DPHN+GA++R+A      G+
Sbjct: 69  HQGVIAYLSAYEYAPL-EELLQVAKDKGEAPFFFLLDGIEDPHNLGAMIRTANLAGAHGV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG--FQTIGLSSDSKKPL 220
           I  KR +   +A +A++++GAL +    +++NL   ++++   G  F    +  +S   L
Sbjct: 128 IIPKRRAVGLTATVARTSAGALNYTKVCKVTNLVQTMEELKKEGMWFVCGDMRGESMYKL 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   I L+LG EG+G+    +ET    A + M G + +LN S A  V  Y
Sbjct: 188 NL---TGSIGLVLGNEGEGVSRLVKETCDMQASIPMKGELDSLNASVACGVLAY 238


>gi|302669499|ref|YP_003829459.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302393972|gb|ADL32877.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 269

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 4/186 (2%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           P+     Q + +I G       L      +L      V+++  + VL++V +P N+GAI+
Sbjct: 81  PIYIAESQVLTQITGFHLTRGVLCAMRRKVLPSVESLVKDAHRIAVLENVTNPTNLGAIV 140

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI- 210
           R+A A   D ++ T   +       A+ + G +  IP+  +   ++ +  +   GF+T+ 
Sbjct: 141 RNAAALGLDAVLFTHGSTDPLYRRAARVSMGTVFQIPWTFLPEGSE-IDTIKGLGFKTVA 199

Query: 211 -GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             L +D+K   + E+KN DK+A+ LGAEG GL P+T         + M   + +LNV+  
Sbjct: 200 MALRNDTKDISDPELKNADKLAIFLGAEGDGLLPETIAACDCCVKIPMAHGVDSLNVAAC 259

Query: 269 AAVALY 274
           +AVA +
Sbjct: 260 SAVAFW 265


>gi|313633669|gb|EFS00423.1| RNA methyltransferase [Listeria seeligeri FSL N1-067]
 gi|313638236|gb|EFS03476.1| RNA methyltransferase [Listeria seeligeri FSL S4-171]
          Length = 252

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  A+      + +LL +K      +W    
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEAIRQDGL-VVELLVSKGVSVPEEWLKGN 67

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F + T     I  ++ +    QG+         P +  +   +LL+V D V DP N+
Sbjct: 68  YDVFEIST----EISHLISETMTEQGV-FAVVTTTEPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D +I  +  +   +  + +S  G+  HIP I+ +NL D +  +   G 
Sbjct: 122 GTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWVANLEEEGV 180

Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG   D + K L    K D +ALI+G EG G+  + Q   +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGISEELQARLSEKVYIPIYGKSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
 gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
          Length = 244

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 125/250 (50%), Gaps = 26/250 (10%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALN-NPSRKIFQLLATKNALARLDWDA 85
           ++Y K+    +K R  +   NLFL  G H V  A N N  +++F L   +          
Sbjct: 11  KEYAKL--IQKKERDKT---NLFLVEGEHMVKEAYNANALQELFILEGIE---------- 55

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
             P  F  +TV  Q ++K+  + +  + + +     L P    V+   +L+ LD+V DP 
Sbjct: 56  -CPIQFNYETVTQQVLNKLSNQNSNSKMIGVCKKLNLKP----VKEENILL-LDNVQDPG 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+A +F  D I  +K  +   +    +S+ GAL +IP I+ ++L + ++K+   
Sbjct: 110 NVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFYIPVIQ-TDLVEEIKKLQER 168

Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             +    +   K    Q+IK + K A+++G EG+G+R +  + +  +  + M    ++LN
Sbjct: 169 NIEVYATALHDKHKDLQDIKPSKKYAILVGNEGQGVRKELIDLSNHIVKIEME-TFESLN 227

Query: 265 VSNAAAVALY 274
           V+ A ++ +Y
Sbjct: 228 VAIATSICMY 237


>gi|229828825|ref|ZP_04454894.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
           14600]
 gi|229791988|gb|EEP28102.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
           14600]
          Length = 246

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L +LD++ DPHN+GAI+R+A      G+I  K  +   +A +AK+++GA+ + P  +++
Sbjct: 99  FLFLLDNIEDPHNLGAIIRTANLAGAHGVIIPKNRAAGLTATVAKASAGAINYTPVAKVT 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL+  ++++   G   +    D +   +  +    I L++G EG G+    ++     A 
Sbjct: 159 NLSRTMEELKKEGLWFVCADMDGQVMYDLNLTG-PIGLVIGNEGSGVGDLVRKHCDLFAA 217

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 218 IPMAGEIDSLNASVAAGVLAY 238


>gi|29346770|ref|NP_810273.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572226|ref|ZP_04849629.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|298386583|ref|ZP_06996139.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           1_1_14]
 gi|29338667|gb|AAO76467.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838001|gb|EES66089.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|298260960|gb|EFI03828.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           1_1_14]
          Length = 247

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     +   ++LD + D  N GAI R+    + 
Sbjct: 66  KN--HQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCECAAV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE  G+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIY 238


>gi|269795465|ref|YP_003314920.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269097650|gb|ACZ22086.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 117/261 (44%), Gaps = 17/261 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPE-NLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           DY  +     +S+H  +PE  LF+    + +  AL    R     +A K   +  D    
Sbjct: 16  DYTNLTDIVLRSKH--EPEKGLFIAESSNVIRRALAAGLRPRSFFMAEKWVESMADVVEQ 73

Query: 87  LPHPFPVKTVPPQTIDKIVG-------KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            P   PV    P+ ++ I G         A+H+ +    A LL+        ++ + + +
Sbjct: 74  WPD-VPVFVGEPKLLEDITGFHLHRGALAAMHRPVEPSVAELLAGARGG-EGARRVAIFE 131

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V D  N+GA  RSA A   D ++ T R S        + + G +  +P+ RI      +
Sbjct: 132 DVVDHTNLGAAFRSAAALGVDAVLVTPRCSDPLYRRSVRVSMGTVFQVPWTRIP-WPSGI 190

Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            ++ + GF    L+ SD    L++  E KN+K A I G EG GL  +T E   S+  + M
Sbjct: 191 GELQAAGFTVAALALSDDSVTLDEFVEQKNEKTAFIFGTEGHGLAQETLEAVDSVVKIPM 250

Query: 257 PGIIKALNVSNAAAVALYITQ 277
            G + +LNV+ +AAV  Y T+
Sbjct: 251 AGGVDSLNVAASAAVVFYATR 271


>gi|295399475|ref|ZP_06809457.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
 gi|294978941|gb|EFG54537.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 14/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           + +KK+    +K R  +    LFL  G H V  AL + +  I QL+  +N      WD +
Sbjct: 13  KQWKKL--LMKKERDKT---GLFLIEGFHLVEEALKS-NISIIQLIVKENKAIPATWDIS 66

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV  V    +  I   E   QG+A      L   +D  R + LL  +D V DP N
Sbjct: 67  ---GIPVAIVTEDVMKAISDTET-PQGIAAVCEQFLYGDIDWTRANVLL--IDAVQDPGN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG ++R+A A   D +I  K  +   +  + ++  G+L H+P IR  NL + ++K+    
Sbjct: 121 IGTMIRTADAAGIDAVILGKGCADLYNPKVIRATQGSLFHLPIIR-GNLREWIEKLQEQN 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G S ++ +           AL++G EG G+  +  +  T   ++ + G  ++LNV+
Sbjct: 180 VPIYGTSLENGEDYRCINPPRPFALLVGNEGSGVHKELLQMTTKNLYIPIYGQAESLNVA 239

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 240 VAAGILLY 247


>gi|254584204|ref|XP_002497670.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
 gi|6523570|emb|CAB62290.1| hypothetical protein [Zygosaccharomyces rouxii]
 gi|238940563|emb|CAR28737.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
          Length = 415

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 135/329 (41%), Gaps = 75/329 (22%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTS---QPENLFLYGVHTVSAALNNP 64
           F  + +H  +L+ N R  ++ ++     F +K+        P   ++YG ++V AAL   
Sbjct: 85  FGKRKAHELRLKENQRRMEQERTTHVHKFEKKNATQGLRPNPLMEYVYGTNSVLAALQGN 144

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IVGKEAVHQGLALETAP 120
            R+ +  L     L     D  L      + V     DK    ++   AVH  + LET P
Sbjct: 145 KREYYSRLLHYGQL-----DPRLQKLAKSRNVELVETDKHRLNLMTNYAVHNNIILETKP 199

Query: 121 LLSPTLD------------------------------AVRNSQ---LLMVLDHVNDPHNI 147
           L  P +                                V+N +   L + LD V DPHNI
Sbjct: 200 LQPPEISHLQMVNPESGTIQYSELAFEDEKITQEMPYGVKNGKNFPLGIYLDEVVDPHNI 259

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHS 204
           GAI+RSA     D I+ +++     SA ++K++SGA+E +P   +    +     Q+   
Sbjct: 260 GAIMRSAYFLGADFIVMSRKNCAPLSAAVSKTSSGAIELLPIFYVDKPLSFFSESQQGGG 319

Query: 205 WGFQTIGLSSDSKK-------------PLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           W F T GL+  ++K              LE   +   + L++G EG G+R  T     S 
Sbjct: 320 WTFVTAGLTDFTQKDKKFNSGKILELNDLEGLCEQVPVVLVVGNEGSGVR--TNLKMRSD 377

Query: 252 AHLHMP-------GIIKALNVSNAAAVAL 273
             + +P       G + +LNVS A A+ +
Sbjct: 378 FFVEIPFGRDDEKGPVDSLNVSVATALLI 406


>gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 250

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 123/249 (49%), Gaps = 18/249 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +++KK+    +K R  +  E   + G H V  AL   + +I +++ ++N      WD   
Sbjct: 14  KEWKKL--LTKKERDKT--ETFLVEGFHLVEEALK--ANQIAEIIISENKDMPPGWDYG- 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV  V  + I ++   E      A+ +     P+ + V+  + L++ D V DP N+
Sbjct: 67  --DIPVTMVTEEIIGQLADTETPQGIFAVCSQ---EPSSEEVKGKRFLLI-DAVQDPGNL 120

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D +I  +    + +  + +SA G+  H+P +R  NL+D + ++     
Sbjct: 121 GTMIRTADAAGIDAVIVGEGSVDAYNPKVLRSAQGSHFHLPVLR-GNLSDWIGRLKESKV 179

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++ +   +   +D  AL++G EG G+  +    A + A+L++P  G  ++LNV
Sbjct: 180 PVYGTALENAREYTKYESSDSFALLVGNEGNGVNKEL--LANTAANLYIPIFGKSESLNV 237

Query: 266 SNAAAVALY 274
           + AA + LY
Sbjct: 238 AVAAGILLY 246


>gi|256826592|ref|YP_003150551.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
 gi|256582735|gb|ACU93869.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
          Length = 284

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 8/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + + ++ G E     L     P L    D + N++ + VL+ + D  N+GA 
Sbjct: 82  IPVFTGSTEILSRLTGFELTRGVLCAMRRPALPSVEDLLANARRVAVLEGIVDHTNVGAA 141

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQKMHSW 205
            RSA A   D ++ T            + + G +  +P+ RI    D      L+++H+ 
Sbjct: 142 FRSAAALGIDAVLVTPTCCDPLYRRSVRVSMGTVFQVPWTRIGQTPDDWPDRGLERLHAC 201

Query: 206 GFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF T  ++ SD+   L     N  +++A+I+G EG GL  +T         + M   + +
Sbjct: 202 GFSTAAMALSDNSVSLSDAALNACERLAIIMGTEGDGLAKRTIAQCDFTVRIPMRHGVDS 261

Query: 263 LNVSNAAAVALY 274
           LNV+ A+AVA Y
Sbjct: 262 LNVAAASAVAFY 273


>gi|291405649|ref|XP_002719297.1| PREDICTED: mitochondrial rRNA methyltransferase 1 homolog
           [Oryctolagus cuniculus]
          Length = 346

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 23/198 (11%)

Query: 99  QTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNS---QLLMVLDHVNDPHNIGAIL 151
           Q +D +  +  VHQG+ +E +PL     + T+ A   +   QL +VLD + DP N+GA+L
Sbjct: 108 QKLDALC-RHQVHQGVCMEVSPLQPQPWTETMGAGPGADPQQLWLVLDGLQDPRNLGAVL 166

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA     D +IT++R S   + V++K+++GA+E +      +L   LQ     G+   G
Sbjct: 167 RSAHFLGVDKVITSRRSSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQARARQGWLVAG 226

Query: 212 --------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHM 256
                    +  S+ P+   +    +    L+LG EG GL  + Q +     T +    +
Sbjct: 227 AVGPPGPETAQSSEVPVTSCLDFLWDRPTLLVLGNEGSGLSQEVQASCRCLLTILPGRQL 286

Query: 257 PGIIKALNVSNAAAVALY 274
           P  +++LNVS AA + L+
Sbjct: 287 PPGLESLNVSVAAGILLH 304


>gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 260

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 14/214 (6%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDA 128
           L  T++A+A+    A LP    +  V     DK+      HQG+        +P  TLD 
Sbjct: 52  LFYTESAMAKCPELAGLPGEHYL--VEDHVADKLA-DVGTHQGV---FGVFRTPVHTLDE 105

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V+     + L+ V DP N+G +LRSA AF  DG+I +   +   +    +++ GA   IP
Sbjct: 106 VKAGGRYLALERVQDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRASMGATVRIP 165

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQE 246
            I    + DA+ ++ + G   +  +    +PL   Q      + +++G+EG+GL  +T  
Sbjct: 166 VIEAGAMPDAITQLRAKGITCLAAALYKSQPLSAAQASYPGGVCVVIGSEGQGLTDETIA 225

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +S   + M   +++LN   A ++ L+    HF
Sbjct: 226 ACSSTVRIPMTDRVESLNAGIAGSILLW----HF 255


>gi|319790011|ref|YP_004151644.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
 gi|317114513|gb|ADU97003.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
          Length = 236

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 8/182 (4%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILR 152
           PQ +D++ G    HQG+    +P+   TL     + V  +     L+ + +P N+GAI R
Sbjct: 51  PQ-LDRLAGT-GKHQGVVAIISPIEYATLQELVEETVNRNSFFFALNGITEPQNLGAIAR 108

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           S   F   G++  +R S   + V  K+++GAL H+  +R+  L + L      G     L
Sbjct: 109 SVELFGGVGLLLPQRGSAPINEVAVKASAGALLHLKVVRVDFLEEGLLAFKESGGNVYAL 168

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +  +   + ++K   +A ILG+EGKG+  +  E A     +   G + +LNVS AA +A
Sbjct: 169 ETGGRDIRDSQLKR-PLAFILGSEGKGIDAELVELADLTVTIPTVGKLPSLNVSVAAGIA 227

Query: 273 LY 274
            +
Sbjct: 228 AW 229


>gi|289434467|ref|YP_003464339.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170711|emb|CBH27251.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 252

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  A+      + +LL +K      +W    
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEAIRQDGL-VVELLVSKGVSVPEEWLKGN 67

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F + T     I   + +    QG+         P +  +   +LL+V D V DP N+
Sbjct: 68  YDIFEIST----EISHFISETMTEQGV-FAVVTTTEPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D +I  +  +   +  + +S  G+  HIP I+ +NL D +  +   G 
Sbjct: 122 GTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPVIQ-ANLFDWIANLEEEGV 180

Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG   D + K L    K D +ALI+G EG G+  + Q   +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGISEELQARLSEKVYIPIYGKSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|73966850|ref|XP_852880.1| PREDICTED: similar to Y45F3A.9 [Canis familiaris]
          Length = 346

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 21/196 (10%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAIL 151
           Q +D +  +  VHQG+ +E +PL       V  ++       L +VL+ + DP N+GA+L
Sbjct: 107 QKLDALC-RHQVHQGVCMEVSPLKPRPWTEVEEARPGDDPRRLWLVLERLQDPRNLGAVL 165

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA     D +IT+ R S   + V++K+++GA+E +      +L   LQ     G+   G
Sbjct: 166 RSAHFLGVDKVITSGRNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQAKARQGWLVAG 225

Query: 212 LSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPG 258
                +  +  EI          +    L+LG EG GL    Q +     T +    +P 
Sbjct: 226 TVGCPRPEMSSEIPITSCLEFLWDQPTLLVLGNEGSGLSQAVQASCQLLLTILPGRQLPP 285

Query: 259 IIKALNVSNAAAVALY 274
            +++LNVS AA + L+
Sbjct: 286 GLESLNVSVAAGILLH 301


>gi|330886609|gb|EGH20270.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 178

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L ++P R     LA      R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A     +
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G
Sbjct: 127 IVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVG 175


>gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 267

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 1/177 (0%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + + +IVG       LA+   P      + V  ++ + VL+ VND  N+G++ R+A    
Sbjct: 85  EVMAEIVGFHLNRGVLAVARRPPELSMAEVVARARTVAVLEGVNDHENLGSMFRNAAGLG 144

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SK 217
            D ++   R S        + + G +  +P+ R+    D L  +   GFQ I ++ D + 
Sbjct: 145 VDAVLFGDRCSDPLYRRSVRVSMGHVLRVPFARVPAWPDGLATLREHGFQLIAMTPDPAA 204

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + L   +  +++AL+LGAEG GL  +        A + M     +LNV+ AAA+A Y
Sbjct: 205 RNLASAMTGERVALLLGAEGPGLTAEAMRACDVRARIPMTPGTDSLNVATAAAMAFY 261


>gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 234

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++LD + DPHN+GAI RSA+ F+ DGII  K      +  + K++ GA++++   +++N
Sbjct: 92  LLILDKMEDPHNLGAIARSALFFNFDGIIIPKHREALVNDTVYKTSQGAVDNVNICQVTN 151

Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L+  ++K+   GF      L  D+ K ++    + K+A+I+G EGKG+     + +    
Sbjct: 152 LSQTIEKLKKAGFWIYAALLEGDNIKDVDF---SGKVAIIIGNEGKGISDNLIKASDFKV 208

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            +       +LN S AA + +Y
Sbjct: 209 KIPNLSEFDSLNASVAAGIIMY 230


>gi|260598962|ref|YP_003211533.1| putative methyltransferase [Cronobacter turicensis z3032]
 gi|260218139|emb|CBA32949.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Cronobacter
           turicensis z3032]
          Length = 257

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+GAI+RS   F   G++  +  S  ES    ++A G  EH+  I
Sbjct: 107 DEDCVLALEDVGNPHNLGAIVRSCAHFGVKGVVV-QDASLLESGAAVRTAEGGAEHVEPI 165

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              + +DAL +  + G+  +  SS    PL +     K+ L+LG E +G+   TQ  A  
Sbjct: 166 TGDSFSDALAQFRAAGYAIVTTSSHKGTPLFKATLPKKMVLVLGQESEGISEATQANADL 225

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              +   G +++LNVS A  V L  +  QN
Sbjct: 226 SLSIDGTGNVESLNVSVATGVLLAEWWRQN 255


>gi|253990660|ref|YP_003042016.1| methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782110|emb|CAQ85274.1| similar to putative trna/rrna methyltransferase yfif escherichia
           coli [Photorhabdus asymbiotica]
          Length = 338

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 25/248 (10%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102
           E   +YG +   A   N S  I +    ++   R    L W A     + V  V    + 
Sbjct: 98  EETRIYGENACQAMFKNRSEAIVRAWFIESVTPRFRNALKWMAANRKAYHV--VDEAELT 155

Query: 103 KIVGKE---------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           K+ G E             GL +ET    +P  D V      + L+ V +PHNIGAI+RS
Sbjct: 156 KVSGTEHHGGVCFLIKKRSGLDVETYLKDAPVKDCV------LALEDVGNPHNIGAIMRS 209

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   G++  +  +  ES    ++A G  EHI  I   +LT  L K    G+  +  S
Sbjct: 210 CAHFGVQGVV-LQDVALLESGAAIRTAEGGAEHIKGIDADSLTTTLNKFRKAGYTIVTTS 268

Query: 214 S-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S      L +    +K+ L+LG E  GL   T E       +   G++++LNVS A  + 
Sbjct: 269 SHKGSTNLAKAELPEKMVLVLGEERDGLSDSTWEYGDMSLFVGGTGLVESLNVSVATGIM 328

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 329 LAEWWRQN 336


>gi|218261847|ref|ZP_03476542.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223738|gb|EEC96388.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
           DSM 18315]
          Length = 249

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 19/241 (7%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK 103
           EN  ++G+  V  A+    ++I ++L  +     L+R  ++       PV+ VP + +D+
Sbjct: 3   ENEMVFGIRAVIEAIQ-ADKEIDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG+         E    + P +     +  +++LD V D  N GAI R+   
Sbjct: 62  LTRKN--HQGVIAFIPAVTYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   R S + +A   K+++GAL  +P  +  ++T+A++ + + G +   + + S
Sbjct: 120 AGVDAIVIPSRGSVTVNADAIKTSAGALHVLPVCKEKSITEAIRFLQASGVK---VYAAS 176

Query: 217 KKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +K  E    IK D  +A+++GAE  G+         SM  +   G I +LNVS A+++ +
Sbjct: 177 EKAFENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILV 236

Query: 274 Y 274
           Y
Sbjct: 237 Y 237


>gi|110636730|ref|YP_676937.1| TrmH family tRNA methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279411|gb|ABG57597.1| tRNA/rRNA methyltransferase, TrmH family [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 268

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 9/182 (4%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAIL 151
           + +D++  K   HQG+    + +   +LD + ++        LL++LD V D  N GA+ 
Sbjct: 76  EKLDRVTRKN--HQGVICYLSAINFASLDNIVSACFESGKNPLLVMLDRVTDVRNFGAVA 133

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA     D +I   R +   ++   K+++GAL HIP  R+ +L D ++ +   G + I 
Sbjct: 134 RSAECLGVDAMIVPSRGAAQLNSDAVKTSAGALYHIPVCRVDHLIDTVKYLKQCGLRIIA 193

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            S  +   +  E   D   +++G+E  G+       A +   + M G I +LNVS A  +
Sbjct: 194 CSEKASINVYDEDLTDPCVILMGSEEDGISMDLLRYADAHVTIPMSGHINSLNVSVATGM 253

Query: 272 AL 273
            L
Sbjct: 254 IL 255


>gi|251771304|gb|EES51885.1| TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
           ferrodiazotrophum]
          Length = 259

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 13/161 (8%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           LE +P ++P+         L+ +D V DP N+GA+LR+  A    G++  +R     S  
Sbjct: 103 LEASPGIAPSP--------LVAVDGVQDPRNLGALLRTCDAAGVGGVLIPRRRVAPLSQT 154

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALIL 233
           +AK+++GAL  +P +RI NL+ +L+++   G+    + LS D      +      + L++
Sbjct: 155 VAKTSAGALFTLPLVRIGNLSGSLRQLKKEGYAIAALDLSGDPLP---EGPLPGPLVLVV 211

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           GAE KG+     + A     L M G +++LN+S AA + LY
Sbjct: 212 GAEEKGVTRPVLDLADWRFRLPMKGKVQSLNLSVAAGIFLY 252


>gi|320581168|gb|EFW95389.1| Ribose methyltransferase [Pichia angusta DL-1]
          Length = 378

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 123/293 (41%), Gaps = 64/293 (21%)

Query: 6   KKKSEKIFSLKDSHY---AKLRRNHRDYKKMQSFNQKSRHT-SQ----PENLFLYGVHTV 57
           ++  E  F  K +H+    K R   RD K   + +Q  R T SQ    P   +LYG + V
Sbjct: 53  REDKESWFKRKHAHHHAKQKKREPQRDEKPEFTRSQALRKTISQLKLNPLVEYLYGTNPV 112

Query: 58  SAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            AAL    R+ F  L   N           ALAR           PVK+   +    ++ 
Sbjct: 113 LAALKAQQRESFGTLYLHNPKSTPKLAEILALAR-------ELELPVKSEYGKHDLNLMT 165

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ---------------------------LLMVLD 139
              VH G+ +ET P+    L  +  S+                           L + +D
Sbjct: 166 NNGVHNGIVVETKPIEVEQLRCLAASEIGKFTVTKEHVGATESSVSSTAAERYPLALYID 225

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            ++DPHN+GAILRSA     D I+ ++R     S V++K++SGALE +P           
Sbjct: 226 EISDPHNMGAILRSAYFLGVDCIVVSERNCAPLSPVVSKTSSGALEFLPIYSSQKPLRFF 285

Query: 200 QKMHSWGFQTIGLSSDSKK-----------PLEQEIKNDKIALILGAEGKGLR 241
           ++  S G+  I   + S+             L+ +++N    L++G+EG+G+R
Sbjct: 286 EESRSNGWTIISSVAPSESGRMGSKQIDADTLKGQLQNGPCMLVVGSEGQGIR 338


>gi|72162663|ref|YP_290320.1| rRNA methylase [Thermobifida fusca YX]
 gi|71916395|gb|AAZ56297.1| putative rRNA methylase [Thermobifida fusca YX]
          Length = 268

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 9/189 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIG 148
           PV  V     +++VG   +H+G+  +    PL  PT+ + V +++ ++VL+ + D  N+G
Sbjct: 77  PVYVVDDAVAEQLVGFH-IHRGILASFHRKPL--PTVPEVVASARRIVVLEDIVDHTNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA     D  +   R +        K + GA+  +PY R+++    L+ +   GF 
Sbjct: 134 AIFRSAAGLGVDAAVLAPRCADPLYRRAVKVSMGAVFTLPYARLTDWASGLEDLRRSGFT 193

Query: 209 TIGLSSDSKK-PLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNV 265
            + L+  +   PL + +  D K AL+ G+EG GL  +  + A   A + M    + +LNV
Sbjct: 194 LVALTPAADAVPLPEAVHRDGKYALLFGSEGDGLSSRWLDQADVRARIPMAVRDVDSLNV 253

Query: 266 SNAAAVALY 274
           + AAA+A Y
Sbjct: 254 TAAAAIACY 262


>gi|313620932|gb|EFR92105.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           S4-378]
          Length = 201

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 12/127 (9%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPH 145
           V+ VP Q I+K+V     HQG+A + A      LD       A       ++LD + DPH
Sbjct: 54  VQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPH 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKM 202
           N+G+I+R+A +    GII  KR S   +  +AK+++GA+E++P +R++N+    + LQK 
Sbjct: 112 NLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKR 171

Query: 203 HSWGFQT 209
             W F T
Sbjct: 172 GLWIFGT 178


>gi|301776018|ref|XP_002923430.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 360

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 23/198 (11%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151
           Q +D +  +  VHQG+ +E +PL       V  +       QL +VL+ + DP N+GA+L
Sbjct: 112 QKLDALC-RSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQLWLVLERIQDPRNLGALL 170

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA     D IIT+ R S   + V++K+++GA+E +      +L   LQ     G+   G
Sbjct: 171 RSAHFLGVDKIITSGRNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQAKAREGWLVAG 230

Query: 212 --------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHM 256
                   +S  S+ P+   ++   +    L+LG EG GL    Q +     T +    +
Sbjct: 231 TVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQAVQASCQLLLTILPGRQL 290

Query: 257 PGIIKALNVSNAAAVALY 274
           P  +++LNVS AA + L+
Sbjct: 291 PPGLESLNVSVAAGILLH 308


>gi|302343505|ref|YP_003808034.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii
           DSM 2075]
 gi|301640118|gb|ADK85440.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii
           DSM 2075]
          Length = 248

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 28/244 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            + G H V+ AL + ++    LL        A+ RL  +A       V+ +  + +D++ 
Sbjct: 7   LIVGRHAVAEALADQAQTAIALLVVAGQRSEAVGRLV-EAARAAGLKVEKIERRRLDQMA 65

Query: 106 GKEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           G  AVHQG+AL  A          LL+   +A R + L++V+DHV DPHN+GA+LRSA A
Sbjct: 66  GG-AVHQGVALRVAAQGRYAAWDELLAVLEEAGRRA-LVLVVDHVQDPHNLGAMLRSAAA 123

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-- 214
               G++  K  +   +  +AK+A+GAL  +   R++N++ AL      G + IGL S  
Sbjct: 124 AGALGVVVPKDRACQLTPAVAKAAAGALGQVAVCRVANISQALA-----GLKEIGLWSVA 178

Query: 215 ----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
                   P   +++   +A+++G+E KG+ P  Q+    +A L +   +++LN S AA 
Sbjct: 179 AVARGGAAPWALDLRG-PLAVVVGSEHKGVAPLVQKNCDMLATLPLAAGVESLNASVAAG 237

Query: 271 VALY 274
           V L 
Sbjct: 238 VMLM 241


>gi|322378717|ref|ZP_08053148.1| SpoU methylase [Helicobacter suis HS1]
 gi|322380665|ref|ZP_08054817.1| rRNA methylase [Helicobacter suis HS5]
 gi|321146987|gb|EFX41735.1| rRNA methylase [Helicobacter suis HS5]
 gi|321148860|gb|EFX43329.1| SpoU methylase [Helicobacter suis HS1]
          Length = 228

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           K A HQG   E  P    TL  ++    ++VL  ++D  N+GA+ RS  A   +G+I   
Sbjct: 61  KGANHQGFLAEVLPPQKSTLKDIKTLDKILVLCGLSDVGNVGALFRSVAALGFEGVI-LD 119

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
            + P E   L +S+ GAL  +P+    N+ D + ++   G    G +    + ++  +  
Sbjct: 120 LHMPYEG--LVRSSLGALYDVPFCVCQNILDVICELKEAGVFCYG-AHIRGQDVKNAVFT 176

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +AL LG+EG GL  +       + H+ M G + +LNVS A A+ +
Sbjct: 177 HPLALFLGSEGMGLHSRILNKMDQLLHIKMQGKMDSLNVSVAGAILM 223


>gi|156932878|ref|YP_001436794.1| putative methyltransferase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531132|gb|ABU75958.1| hypothetical protein ESA_00679 [Cronobacter sakazakii ATCC BAA-894]
          Length = 357

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+GAI+RS   F   G++  +  S  ES    ++A G  EH+  I
Sbjct: 207 DEDCVLALEDVGNPHNLGAIVRSCAHFGVKGVVV-QDASLLESGAAVRTAEGGAEHVEPI 265

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              + +DAL +  + G+  +  SS    PL +     K+ L+LG E +G+   TQ  A  
Sbjct: 266 TGDSFSDALAQFRAAGYAIVTTSSHKGTPLFKATLPKKMVLVLGQESEGISEATQANADL 325

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              +   G +++LNVS A  V L  +  QN
Sbjct: 326 SLSIDGTGNVESLNVSVATGVLLAEWWRQN 355


>gi|322688977|ref|YP_004208711.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460313|dbj|BAJ70933.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 292

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 32/221 (14%)

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140
           W A++P    V    P+ + ++ G   +H+G   A+   PL S   +  ++++ + V+++
Sbjct: 78  WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCKSARRVAVMEN 131

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--- 197
           + D  N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D   
Sbjct: 132 IVDHTNVGALMRSAAALDVDVVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGT 191

Query: 198 ---------ALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236
                     + ++ S GF T+ ++ + +             P E     DK+ALI G E
Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTE 251

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GL   T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 252 GDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|291522469|emb|CBK80762.1| rRNA methylase, putative, group 3 [Coprococcus catus GD/7]
          Length = 247

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 21/203 (10%)

Query: 92  PVKTVPPQ-----TIDKIVGKEAV--------HQGLALETAPLLSPTLDAV-------RN 131
           PVKT+  +     TI   V KE +        HQG+    A     ++D +         
Sbjct: 37  PVKTITREARKQHTIISYVSKERLDQLSETHHHQGVIAIAAAYDYASVDDILAKAREKGE 96

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              + +LD + DPHN+GAI+R+A      G+I  K  +   +A +A++++GAL   P  +
Sbjct: 97  EPFIFLLDGIEDPHNLGAIIRTANLAGAHGVIIPKHRAVGLTATVARTSAGALNFTPVAK 156

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL  A+ ++   G   +      +    Q +    I L++G EG+G+    +E     
Sbjct: 157 VTNLGAAMDELKKEGLWFVCADMKGEVMYRQNLTG-PIGLVIGNEGEGVSRLVREKCDFT 215

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           A + M G I +LN S AA V  Y
Sbjct: 216 ASIPMKGDIDSLNASVAAGVLAY 238


>gi|283781122|ref|YP_003371877.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283439575|gb|ADB18017.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 278

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 114/258 (44%), Gaps = 24/258 (9%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
           R+ +Q   LF+     +   L   S  +  LLA  +   R  +   +P   P+  V   T
Sbjct: 23  RNLAQHSGLFIVEGDKLVDRLITSSFAMHSLLAEPDMAER--YATQVPAEVPIYVVDRAT 80

Query: 101 IDKIVGKEAVHQGL-------------ALETAPLLSPTLDAVRNSQ---LLMVLDHVNDP 144
           +   +G    H+G+              L T P     + A R +    L++VL  V DP
Sbjct: 81  LQATIGFN-FHRGILGCGYRREQPTVEQLLTTPPTVAQVTAGRAADIGNLILVLAEVQDP 139

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G+ILRSA AF C G++   R +   +  + + + G+   IP    SNL   L+ +  
Sbjct: 140 TNLGSILRSAAAFGCRGVVLGPRCADPFARRVIRVSMGSALTIPITVSSNLACDLESIAE 199

Query: 205 WGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G+Q T  + SD  K L     +   AL+LG+EG GL P+          + M     +L
Sbjct: 200 KGYQLTATVLSDRAKKLGDLQLDVPRALLLGSEGNGLAPEWIAMCREHVTIPMAWGTDSL 259

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ AAAV LY    HF+
Sbjct: 260 NVAIAAAVLLY----HFS 273


>gi|257057053|ref|YP_003134885.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256586925|gb|ACU98058.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 256

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 14/247 (5%)

Query: 41  RHTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVK 94
           +  + P++ FL  YG   V  AL +P+  + +++        A+A +   A      PV+
Sbjct: 4   KQATSPKDRFLTVYGRKPVLEALRDPALDVDKVIMADTVRGPAIAEIQRAAEA-RGVPVR 62

Query: 95  TVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAI 150
                 +  + G     QG LA   AP + P   A+        L+VLD +    N+G I
Sbjct: 63  RASAHRVKVLAGNGKQDQGVLADVVAPRMRPLAAALEGRTPPSPLLVLDGITTSANVGMI 122

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A    G++  +R   +   ++ K+++G     P +R +   +A++ +   G+   
Sbjct: 123 LRTATAAGIPGVVVPRRGVAALDPLVVKASAGVAFRAPVLRCATAVEAVESLVEVGYTVY 182

Query: 211 GLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            L + +          D   ++A +LG E +G+     +       + MPG +++LNVS 
Sbjct: 183 ALGARADAESTSLFDTDVPSRVAFVLGGETEGVSAAVADLVAGWVSIPMPGDVESLNVSA 242

Query: 268 AAAVALY 274
           AAAV  +
Sbjct: 243 AAAVVCF 249


>gi|256370003|ref|YP_003107514.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|256000166|gb|ACU48565.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
          Length = 276

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R  ++ + + L  + + SA 
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58

Query: 61  LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116
               S     LL  +N L  L +    LP   PV +VP   +D I G   VH+G LA+  
Sbjct: 59  FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAIAGFH-VHRGILAVGR 112

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +         
Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG 
Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           EG+GL  +  E   + A + M     +LNV+ A+ +AL
Sbjct: 233 EGEGLPSRLLERLET-ARIPMSKTFDSLNVATASGIAL 269


>gi|256832412|ref|YP_003161139.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685943|gb|ACV08836.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 282

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 3/146 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + VLD + D  N+GAI+RS  A   DGII     +        + + G +  +P+ R +N
Sbjct: 137 IAVLDGIIDHTNLGAIIRSCAALGVDGIIVNHTSADPLYRRAIRVSMGTVFQVPWTRANN 196

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSM 251
           L + L  +H   + T  L+ SD+   L+Q     +DK+A + G EG GL  +T  T + +
Sbjct: 197 LIEVLDLLHEAHYTTAALALSDNAITLDQFNAENHDKVAFLFGNEGHGLSDRTLATVSRV 256

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M G + +LNV+  +A+  Y T+
Sbjct: 257 VTIPMAGDVDSLNVAATSALVFYATR 282


>gi|256826939|ref|YP_003150898.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
 gi|256583082|gb|ACU94216.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
          Length = 303

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 13/200 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV  V  +    + G E     LA+    +L      ++N++ + +L+ + +  NIGA 
Sbjct: 102 IPVFIVTHEQFRAVTGYEVTRGALAVFERLVLPRPEALLKNARRVAILEDIVNYTNIGAA 161

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN----------LTDALQ 200
            RSA A S D ++ T           A+ + G +  +P+ RI            +   + 
Sbjct: 162 FRSAAALSIDAVLLTPSCHDPLYRRAARVSMGTVFQVPWTRIGAKAHSGSTGDWVESGID 221

Query: 201 KMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +H +GF+T+ L+  D   PL        +++AL+LG EG GL  +T+     MA + M 
Sbjct: 222 LLHRFGFKTVALALDDDALPLNDARFAACERLALVLGTEGDGLAEQTRMLCDWMARIPMA 281

Query: 258 GIIKALNVSNAAAVALYITQ 277
             I +LNV+ A+AVA + T+
Sbjct: 282 PGIDSLNVAAASAVAFWETR 301


>gi|54020641|ref|YP_116168.1| hypothetical protein mhp660 [Mycoplasma hyopneumoniae 232]
 gi|53987814|gb|AAV28015.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 233

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 89/193 (46%), Gaps = 5/193 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           VK V    +DK+V     HQG    LE               +++++LDH+ D +N+G I
Sbjct: 40  VKIVSRDFLDKLVSLN--HQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNI 97

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A  F    II  K+ +   +    K +SG    + +I ++++  A+ K+    F   
Sbjct: 98  IRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIY 157

Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                 K    QEI+ N   A+ILG EG G++  +   +     + + G + +LNV+ A 
Sbjct: 158 ATDLKEKSRKIQEIQFNYPCAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVAT 217

Query: 270 AVALYITQNHFAK 282
            + L+  + +  K
Sbjct: 218 GIILFFLKQNIKK 230


>gi|229496145|ref|ZP_04389865.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316723|gb|EEN82636.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           endodontalis ATCC 35406]
          Length = 246

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 19/238 (7%)

Query: 50  FLYGVHTVSAALNNPSR--KIF--QLLATKN--ALARLDWDANLPHPFPVKTVPPQTIDK 103
            ++G+H+V  AL       KI+  + L ++   A+ RL  +  +P    V  VP + +++
Sbjct: 6   IIFGIHSVQEALEAGQEIDKIYLRRALVSEEIRAIKRLAREQRIP----VLEVPAERLNR 61

Query: 104 IVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                  HQG     A        +L P +       L+++L+ V D  N GAI RSA  
Sbjct: 62  F--TRGAHQGCVAIIAQVSYTPLEMLVPQIFERGEDPLIVLLNGVTDTRNFGAIARSAEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  +R S S SA    +++GAL  IP  R+ +++ A+  +   G Q +  +  +
Sbjct: 120 AGAHALVIAERGSVSVSADAVNASAGALMRIPVCRVPSISGAVGYLAECGLQIVVANEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +           +AL++G+E +G+ P+    AT    +   G I +LNVS AA + L+
Sbjct: 180 ENTYYTADLTGPLALVMGSEHEGVSPQVARLATLSVAIPQVGEIGSLNVSVAAGILLF 237


>gi|126307628|ref|XP_001370730.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Monodelphis domestica]
          Length = 425

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 31/260 (11%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPP 98
           S P    L+G+   + AL    R + +LL  K  +     A +  DA      PV+ +  
Sbjct: 115 SAPRLEILFGLAPCTLALRAARRAVTRLLLQKGVVGSGPRAEVARDAEALG-IPVQLMRR 173

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---------LLMVLDHVNDPHNIGA 149
           + +D +  +  +HQGL +E APLL       R ++         L ++L+ + DP N+GA
Sbjct: 174 RELDALC-RGQIHQGLCMEVAPLLPKAWPEGRENEPREDPASRRLWLILEEIQDPRNLGA 232

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-- 207
           +LRSA     D +IT++R S   + V++K+++G +E +      +L   L+     G+  
Sbjct: 233 VLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGTMEVMDVFATDDLPGLLKVKAQQGWLV 292

Query: 208 -QTIGLSSD-----SKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHL 254
             T+G         S  P+   ++   +    L+LG EG GL  + +       T +   
Sbjct: 293 AGTVGCPGSVVPQCSDIPITSCLEFLWDRSTLLVLGNEGSGLSHEIRNLCHILLTILPGR 352

Query: 255 HMPGIIKALNVSNAAAVALY 274
            +P  +++LNVS AA + L+
Sbjct: 353 ELPPEVESLNVSVAAGILLH 372


>gi|328725718|ref|XP_003248590.1| PREDICTED: putative TrmH family tRNA/rRNA methyltransferase-like
           [Acyrthosiphon pisum]
          Length = 344

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 88/154 (57%), Gaps = 11/154 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDP 144
           V+TVP   ID +   +  HQG+A + AP         +S T D + +   L++LD + DP
Sbjct: 50  VQTVPKSKIDYLT--DVPHQGIAAQIAPYPYKELEDFISETKD-IDHVPCLLMLDGLEDP 106

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G+I+R+A A   DGII  KR S   +A +AK+++GA++H+P IR++NL   ++++  
Sbjct: 107 HNLGSIMRTADAIGIDGIIIPKRRSVQLNATVAKASTGAIQHVPVIRVTNLPQTIERLQE 166

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
             +   G  + +     Q      + +++G+EG+
Sbjct: 167 VRYWVAGTDAKNATDYRQMDAGMPLVIVIGSEGE 200


>gi|317488634|ref|ZP_07947177.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325831627|ref|ZP_08164844.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
 gi|316912286|gb|EFV33852.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486498|gb|EGC88947.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
          Length = 279

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           FPV     +    + G E     LA    P L    D + +++ + VL+ V +  NIGA+
Sbjct: 81  FPVLVATREQFRALTGYEVTRGALAAFERPPLPRVEDLLASARRVAVLEDVTNYTNIGAV 140

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN----LTDALQKMHSWG 206
            RSA A   D ++ T           A+ + G +  +P+ RI +      + +  + S G
Sbjct: 141 FRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQVPWTRIGSERAWAAEGVPLLRSLG 200

Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F T  L+ SD    L  E     DK+AL+LG EG GL P T         + M   + +L
Sbjct: 201 FSTAALALSDEAIFLHDERLRGCDKLALVLGTEGDGLAPSTIANCDYTVKIPMDHDVDSL 260

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 261 NVAAASAVAFW 271


>gi|323360047|ref|YP_004226443.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323276418|dbj|BAJ76563.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 268

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 11/203 (5%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQL 134
           +ALA +  DA       +  VP +  +++ G   VH+GL A    P+L+   D V  ++L
Sbjct: 66  DALALVGEDAE------IYVVPAEIAERVTGY-TVHRGLLASMHRPVLASVEDVVEGARL 118

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VL+ + D  NIGA  RSA A   D ++ T R +        + + G +  +P+ R+  
Sbjct: 119 VVVLEDIVDHTNIGAAFRSAAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLPE 178

Query: 195 LTDAL-QKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSM 251
            ++A      +         SD    L+    + ++++AL++GAEG GL       A ++
Sbjct: 179 WSEAKPLLHAAGLHLAALALSDDAVTLDAFSAVGHERVALLMGAEGDGLSRGALAAADTV 238

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M G + +LNV+ A+AVAL+
Sbjct: 239 VTIPMAGGVDSLNVAAASAVALW 261


>gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
 gi|149753668|gb|EDM63599.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
          Length = 263

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 72/141 (51%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+MVLDH+ DP N+G ILR+A      GI+  +      +    +S  G++  +P++ + 
Sbjct: 114 LIMVLDHLQDPGNLGTILRTAEGAGVTGILMDRECVDVYNPKTIRSTMGSIYRMPFVYVE 173

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L   +Q +   G  T     +     ++E   +  A ++G EG GLR +  + A     
Sbjct: 174 DLGKGIQDLKDKGITTYAAHLEGTNSYDEEDLTNPCAFLIGNEGNGLRREIADMADCYVK 233

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + A++V ++
Sbjct: 234 IPMLGQVESLNAAIASSVLMF 254


>gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 250

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 14/191 (7%)

Query: 94  KTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHN 146
           + V P  ++K+ G   +H G  +A+  AP +     A     V+  + L+VLD + + HN
Sbjct: 53  RCVEPAELEKVGGT--LHHGGIVAVVEAPEMREPAAADLTAWVKRCEPLLVLDRIGNAHN 110

Query: 147 IGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           +GAI R+A  F    +I  +      PSE+A   + A G + H+   R+ +L   L+ + 
Sbjct: 111 LGAIARTAAFFGLPRLILPRDPAAAQPSEAAY--RVAEGGMTHLELARVDDLPAFLRSLV 168

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G+  IG ++    P  Q      IAL+LG E  GL  +     T +  +   G +++L
Sbjct: 169 AAGYDVIGAATRGGLPQAQSHTGKPIALVLGNEEHGLSAEVAAACTRLVTIPGSGKVESL 228

Query: 264 NVSNAAAVALY 274
           NVS A AV ++
Sbjct: 229 NVSVAGAVLIW 239


>gi|255010434|ref|ZP_05282560.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313148238|ref|ZP_07810431.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313137005|gb|EFR54365.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 246

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     S   ++LD + D  N GAI R+      
Sbjct: 66  KN--HQGVVAFISSVTYQKTEDLVPFLFEEGKSPFFVMLDGITDVRNFGAIARTCECAGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE  G+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIY 238


>gi|50364903|ref|YP_053328.1| rRNA methylase [Mesoplasma florum L1]
 gi|50363459|gb|AAT75444.1| rRNA methylase [Mesoplasma florum L1]
          Length = 242

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 118/245 (48%), Gaps = 15/245 (6%)

Query: 47  ENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ENL  +YG H V+  +      I ++  + +   ++D   N    F +  V  + I+ +V
Sbjct: 2   ENLSLIYGKHAVNEFIKKHPNLIKKIYISSDF--KIDKSNN---EFQILKVDLKKIENLV 56

Query: 106 GKEAVHQGLALETAPL----LSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSC 159
           G EA HQG+  E            L+ +++ +  L+++LD + DP+N GAI+RS+     
Sbjct: 57  GNEANHQGIVAEVKEFNYKPFGEALNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGV 116

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSK 217
           D I+         ++ + K+++G +  +   +++NL++A++ +   GF   +  L+S+S 
Sbjct: 117 DQIVILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQKNGFWIYSTHLNSESN 176

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + +  N + A+++G E  G+     + +     +     I + N + A ++ LY   
Sbjct: 177 DMRKVDFAN-RTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVA 235

Query: 278 NHFAK 282
           N+  K
Sbjct: 236 NYIGK 240


>gi|15606918|ref|NP_214299.1| rRNA methylase [Aquifex aeolicus VF5]
 gi|2984156|gb|AAC07690.1| rRNA methylase [Aquifex aeolicus VF5]
          Length = 240

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 15/157 (9%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALE 185
           + +      +V+DH+ DP N+G +LR+       G +I+  R SP    V+ K++SGA+ 
Sbjct: 87  ECIEKKSFFIVIDHITDPQNVGNLLRTCEVLGGVGALISKDRTSPINETVV-KASSGAVF 145

Query: 186 HIPYIRISNLTDAL---QKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKG 239
           H+   ++S+L+  L   QKM  W F       D ++   PL        +AL+LG+E KG
Sbjct: 146 HLKISKVSSLSRELKNFQKMGGWVFAVEKGGKDIREVDIPLP-------VALVLGSEDKG 198

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     + +  +  + M G + +LNV +A A+A++ T
Sbjct: 199 VSKSVLDISDQIVTIPMKGKVTSLNVGSAGAIAMWET 235


>gi|329898069|ref|ZP_08272279.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
 gi|328920968|gb|EGG28392.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
          Length = 256

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++LD V +P N+G ILRS  A    G+I  +R       ++AK+++G L H P +R ++
Sbjct: 113 LILLDRVTNPQNLGMILRSTTAAGITGVIVPERGCAPLGPLVAKASAGTLFHAPVLRCTS 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            ++AL  +   GF    LSS ++    +E    K   +LG E +G+ P       +   +
Sbjct: 173 SSEALDALLGLGFTCYTLSSHTESNFFEEHIPAKAVFVLGNESEGVAPDIASRCQAKVRI 232

Query: 255 HMPGIIKALNVS-NAAAVALYI 275
            M   +++LNV+  AA +A Y+
Sbjct: 233 PMHNGVESLNVAITAALIAYYL 254


>gi|295094660|emb|CBK83751.1| rRNA methylases [Coprococcus sp. ART55/1]
          Length = 285

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 24/205 (11%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147
            P+ T P   + K+ G  A+ +G+  A+  A L  P++++V  ++  + VL+ V +P N+
Sbjct: 78  IPIYTAPFDVLTKLTGF-ALTRGMLCAMRRAEL--PSVESVCEHAARIAVLEEVMNPTNV 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--------NLTD-- 197
           GAI RSA A   D ++ T   S       A+ + G +  IP+  I+        N  D  
Sbjct: 135 GAIFRSAAALGMDAVLLTPGCSDPLYRRAARVSMGTVFQIPWTYITFDTLGLAHNKADHG 194

Query: 198 -----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETAT 249
                 + ++HS GF+T  + L +D+    + E+K  D++A+ILG EG+GL+ +T +++ 
Sbjct: 195 IWPEFGMGQLHSMGFRTASMALRNDTIDIHDPELKQIDRLAVILGTEGEGLKTETIDSSD 254

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M   + +LNV+ A+AVA +
Sbjct: 255 YTVKIPMYHGVDSLNVAAASAVAFW 279


>gi|257791998|ref|YP_003182604.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|257475895|gb|ACV56215.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
          Length = 279

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           FPV     +    + G E     LA    P L    D + +++ + VL+ V +  NIGA+
Sbjct: 81  FPVLVATREQFRALTGYEVTRGALAAFERPPLPRVEDLLASARRVAVLEDVTNYTNIGAV 140

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN----LTDALQKMHSWG 206
            RSA A   D ++ T           A+ + G +  +P+ RI +      + +  + S G
Sbjct: 141 FRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQVPWTRIGSERAWAAEGVPLLRSLG 200

Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F T  L+ SD    L  E     DK+AL+LG EG GL P T         + M   + +L
Sbjct: 201 FATAALALSDEAIYLHDERLRACDKLALVLGTEGDGLAPSTIANCDYTVKIPMDHEVDSL 260

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 261 NVAAASAVAFW 271


>gi|257789988|ref|YP_003180594.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|317489433|ref|ZP_07947943.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|257473885|gb|ACV54205.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|316911362|gb|EFV32961.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
          Length = 283

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 17/199 (8%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV   P   + K+ G E     L     P L    D VR ++ + VL+ + +  N+GAI 
Sbjct: 82  PVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRITVLEDITNHTNVGAIF 141

Query: 152 RSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRISNLT------------DA 198
           RSA A   D ++ T   Y P     + + + G +  +P+ RI                D 
Sbjct: 142 RSAAALGIDAVLVTPACYDPLYRRAV-RVSMGTVFQVPWTRIGEEAGAGATGTGGWAPDG 200

Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLH 255
           +  +H  GF+T   + +D   PL+    N  +++AL+ G EG GL   T         + 
Sbjct: 201 VPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDYTVRIP 260

Query: 256 MPGIIKALNVSNAAAVALY 274
           M   + +LNV+ A+AVA +
Sbjct: 261 MACGVDSLNVAAASAVAFW 279


>gi|220903658|ref|YP_002478970.1| TrmH family RNA methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867957|gb|ACL48292.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 268

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 12/182 (6%)

Query: 106 GKEAV-HQG----LALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFS 158
           G++AV HQG    LA  +   L     AV  + L  ++ LD V DP N+G + R+  A  
Sbjct: 82  GRDAVAHQGVVARLAATSFCELEHIFAAVEQAPLPIILALDQVQDPGNVGTLCRTLYALG 141

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--- 215
             GII  +  S        +SA+GALEH+P  R++NL  AL      G    G       
Sbjct: 142 GAGIILPRHNSAYLGPAARRSAAGALEHLPVARVTNLGHALDSAEEAGLTIYGAGGQNGP 201

Query: 216 -SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            S     + ++   + L+LG E KGLRP   +    M  + +     +LNV+ A A+ L 
Sbjct: 202 ASVDAFAEPVRLPAV-LVLGNEEKGLRPGIVKRCAHMLRIPLARSFDSLNVAQAGAILLG 260

Query: 275 IT 276
           +T
Sbjct: 261 LT 262


>gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
 gi|149830826|gb|EDM85916.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
          Length = 258

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 70/141 (49%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LLMVL+ + DP N G I+R+       G+  TK      +  + ++  G++  IP+  + 
Sbjct: 110 LLMVLEDLQDPGNAGTIIRTGEGAGVSGVFLTKTCVDITNPKVIRATMGSVYRIPFFYVE 169

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++    QK+   G + +      K   ++E   D  A ++G EGKGL  +  + A  +  
Sbjct: 170 DVVSLKQKLQGRGIRFLAAHLQGKNSYDRESYEDGTAFLIGNEGKGLTDQAADAADCLIR 229

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + AA + +Y
Sbjct: 230 IPMCGQVESLNAAMAAGILMY 250


>gi|291276915|ref|YP_003516687.1| putative rRNA methylase [Helicobacter mustelae 12198]
 gi|290964109|emb|CBG39953.1| putative rRNA methylase [Helicobacter mustelae 12198]
          Length = 251

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 17/251 (6%)

Query: 31  KKMQSFNQKSRHT-SQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           KK    +QK  H  +QP  E+L +YG  T    L    + I ++  +K      + +  +
Sbjct: 2   KKQLRHDQKPTHNPAQPKQEDLIVYGKQTSLYILEQMPQIIKEVYFSK------EMERGV 55

Query: 88  PHPFPVKTVPPQTID----KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            H F     P   ID    + + K   HQG+ L+ + L       ++ S+ L++L  + D
Sbjct: 56  FHQFAKIHKPILKIDNKKAQALSKNGNHQGVFLKISALEYTPFKILKKSEKLLILHGITD 115

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIG+I RSA     DGI+       S   VL +++ GA+  +P+  + N+ D + ++ 
Sbjct: 116 TGNIGSIFRSAYCLGVDGIVLCGVRGFSIEGVL-RTSVGAILQMPFCVVENILDVIHELK 174

Query: 204 SWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           +   +T+ L +D++   E  I    K AL LG+E  GL  +       +  + M     +
Sbjct: 175 NE--KTLCLGADARGEEEGRIAGVQKWALFLGSENTGLPSQVLSKLDRILAIKMHRGFNS 232

Query: 263 LNVSNAAAVAL 273
           LNV  AA + +
Sbjct: 233 LNVGVAAGILI 243


>gi|17986712|ref|NP_539346.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|23502453|ref|NP_698580.1| RNA methyltransferase [Brucella suis 1330]
 gi|161619530|ref|YP_001593417.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163843839|ref|YP_001628243.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|225628025|ref|ZP_03786061.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|225853064|ref|YP_002733297.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|254689771|ref|ZP_05153025.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870]
 gi|254694260|ref|ZP_05156088.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str.
           Tulya]
 gi|254702308|ref|ZP_05164136.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513]
 gi|254704836|ref|ZP_05166664.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686]
 gi|254710622|ref|ZP_05172433.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94]
 gi|254714806|ref|ZP_05176617.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1]
 gi|254717866|ref|ZP_05179677.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1]
 gi|256032115|ref|ZP_05445729.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1]
 gi|256045207|ref|ZP_05448106.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061637|ref|ZP_05451776.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33]
 gi|256114159|ref|ZP_05454913.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160311|ref|ZP_05458005.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1]
 gi|256258023|ref|ZP_05463559.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68]
 gi|256263453|ref|ZP_05465985.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|260169250|ref|ZP_05756061.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. F5/99]
 gi|260755304|ref|ZP_05867652.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260884319|ref|ZP_05895933.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261214568|ref|ZP_05928849.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219713|ref|ZP_05933994.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261318195|ref|ZP_05957392.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322602|ref|ZP_05961799.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261325647|ref|ZP_05964844.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261752875|ref|ZP_05996584.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755532|ref|ZP_05999241.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|265989226|ref|ZP_06101783.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991641|ref|ZP_06104198.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995478|ref|ZP_06108035.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998688|ref|ZP_06111245.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|297248855|ref|ZP_06932573.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|17982336|gb|AAL51610.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|23348443|gb|AAN30495.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|161336341|gb|ABX62646.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163674562|gb|ABY38673.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|225617188|gb|EEH14234.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|225641429|gb|ACO01343.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|260675412|gb|EEX62233.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873847|gb|EEX80916.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916175|gb|EEX83036.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260924802|gb|EEX91370.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261295292|gb|EEX98788.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297418|gb|EEY00915.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261301627|gb|EEY05124.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261742628|gb|EEY30554.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261745285|gb|EEY33211.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262553312|gb|EEZ09146.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766591|gb|EEZ12380.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002425|gb|EEZ15000.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093460|gb|EEZ17510.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661423|gb|EEZ31684.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|297176024|gb|EFH35371.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|326409607|gb|ADZ66672.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
 gi|326539310|gb|ADZ87525.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
          Length = 276

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R  ++ + + L  + + SA 
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58

Query: 61  LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116
               S     LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+  
Sbjct: 59  FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +         
Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG 
Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           EG+GL  +  E   + A + M     +LNV+ A+ +AL
Sbjct: 233 EGEGLPSRLLERLET-ARIPMSKTFDSLNVATASGIAL 269


>gi|254719617|ref|ZP_05181428.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13]
 gi|265984627|ref|ZP_06097362.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|264663219|gb|EEZ33480.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
          Length = 276

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R  ++ + + L  + + SA 
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58

Query: 61  LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116
               S     LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+  
Sbjct: 59  FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +         
Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG 
Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           EG+GL  +  E   + A + M     +LNV+ A+ +AL
Sbjct: 233 EGEGLPSRLLERLKT-ARIPMSTTFDSLNVATASGIAL 269


>gi|294852903|ref|ZP_06793576.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|294821492|gb|EFG38491.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 276

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R  ++ + + L  + + SA 
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58

Query: 61  LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116
               S     LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+  
Sbjct: 59  FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +         
Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG 
Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           EG+GL  +  E   + A + M     +LNV+ A+ +AL
Sbjct: 233 EGEGLPSRFLERLET-ARIPMSKTFDSLNVATASGIAL 269


>gi|12045106|ref|NP_072917.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|1723134|sp|P47494|Y252_MYCGE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
 gi|3844850|gb|AAC71472.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma genitalium
           G37]
 gi|166079076|gb|ABY79694.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 242

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 9/177 (5%)

Query: 111 HQGLA--LETAPLLSPT---LDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQ L   L+T  LL P    +  V N +   L++LD + DP+N GAILR+ +A   DGII
Sbjct: 66  HQELVAVLDTNQLLIPLDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGII 125

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLE- 221
             K      +  + K++ G++ +   ++++NL+  + K+   GF T+  + D   KP++ 
Sbjct: 126 FKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVSTLDPIWKPIDY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++   K  LI+G E +G+     + A     + M   I +LNVS A  + L+  +N
Sbjct: 186 RKVDFAKKILIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAWKN 242


>gi|222628624|gb|EEE60756.1| hypothetical protein OsJ_14313 [Oryza sativa Japonica Group]
          Length = 783

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 13/197 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102
           E  ++ GV+ V++++ N +  + ++L    A    L  ++ +A       V+ V  Q +D
Sbjct: 386 EGQWIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARR-KGIDVRKVNSQALD 444

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A         L   + A     LL+VLD V DPHN+GA LRSA 
Sbjct: 445 G-VGGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAA 503

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S + +A + K+++GA + IP + ++NL+  L+ +   G    GL+ +
Sbjct: 504 AAGATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGE 563

Query: 216 SKKPLEQEIKNDKIALI 232
           +   L Q      IALI
Sbjct: 564 ATASLYQLDLKGNIALI 580


>gi|327404233|ref|YP_004345071.1| TrmH family RNA methylase [Fluviicola taffensis DSM 16823]
 gi|327319741|gb|AEA44233.1| RNA methyltransferase, TrmH family, group 3 [Fluviicola taffensis
           DSM 16823]
          Length = 274

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 20/266 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           ++N R+ ++   FNQ  R+  +     P ++ +YG+  V  A+ N   +I ++L  K   
Sbjct: 4   KKNDRE-ERGGGFNQDKRNFERKPKEDPTDI-IYGIRVVIEAIKNEV-EINKILIQKGID 60

Query: 79  ARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL- 134
             L  +         + ++ VP + ++K+      HQG+   T+P+    ++ + +  L 
Sbjct: 61  KDLFEELRTVLTGKEYQLQFVPVEKLNKLTVNN--HQGVIAFTSPVEYKNIEELCDQWLS 118

Query: 135 ------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 ++VLD + D  N G I R+A     D I+   + S   SA   K+++GAL  IP
Sbjct: 119 EGKEPCILVLDRITDVRNFGGIARTAACMGVDAILVPSKGSALVSADAIKTSAGALHSIP 178

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             +   L ++L  +   GFQ +  +  SK   E        A+I+G+E  G+     + +
Sbjct: 179 VCKTDLLKNSLFYLQQSGFQLVSCTEKSKVSAENYSFFGPTAIIVGSEEDGISHDLLKMS 238

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M G I +LNV  A  + LY
Sbjct: 239 DVRLSIPMAGDISSLNVGVATGMILY 264


>gi|152965580|ref|YP_001361364.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151360097|gb|ABS03100.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 272

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 118/268 (44%), Gaps = 32/268 (11%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNP--------SRKIFQLLATKNAL 78
           RDY  ++    ++R     E L+L  GV  +  AL           SR  F+ LA     
Sbjct: 19  RDYTALKDVQLRARREPA-EGLYLAEGVEVIRRALAAGHVPRSLLLSRSRFEDLADV--- 74

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRN 131
                   LP    V   P      + G + +H+G        A  + P L  +L A   
Sbjct: 75  --------LPAGATVFVAPVAAFADLTGVD-LHRGALASMQRPAQRSVPDLLASLPA--G 123

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              L+VL+ V D  N+GA+ RSA AF  DG++ + R +        + + G + H+P+ R
Sbjct: 124 PARLVVLEDVVDHTNVGALFRSAAAFGVDGVVVSPRCADPLYRRSVRVSMGTVLHLPWAR 183

Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++    L  + S GF    L+ ++    L      +++AL+LG EG GL  +    A  
Sbjct: 184 AASWPGDLDLLRSAGFAVAALALTEDSVALGSFAVPERLALLLGTEGDGLSRRALSGADL 243

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  + M   + +LNV+ A+AVAL+ T+ 
Sbjct: 244 VVRIPMDPRVDSLNVAAASAVALWETRR 271


>gi|88856163|ref|ZP_01130823.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814482|gb|EAR24344.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 267

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 5/187 (2%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           PV     + ++++ G   +H+G LA    P L    + +++++ +++L+ + D  N+GA+
Sbjct: 77  PVYVGESELLEQLTGFN-LHRGALASMHRPALRSVSELIKDARRIVILEDIVDHTNVGAV 135

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++ T R +        + + G +  +P+ RI N       + + GF   
Sbjct: 136 FRSAAALGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRILNWPADAALLKAAGFHLA 195

Query: 211 GLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            L+ +D    L+    N  +++ALILG EG GL  +T E A S+  + M   + +LNV+ 
Sbjct: 196 ALALNDDSIDLDTFAANAPERVALILGTEGDGLSRQTIEAADSVVKIPMMHGVDSLNVAA 255

Query: 268 AAAVALY 274
           A+AV +Y
Sbjct: 256 ASAVGMY 262


>gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
           10379]
 gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
           10379]
          Length = 251

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 88/169 (52%), Gaps = 6/169 (3%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ +    ++   LD + N   +++LD + DP N+G I+R+A AF+ D II  K  +  
Sbjct: 85  QGI-IAVCRIVKKELD-INNYSKVLILDKIQDPGNLGTIIRTADAFNFDCIILGKGTTSL 142

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIA 230
               + +S  G+  HI      +L + + +MH +      L +D  K +EQ +    K+A
Sbjct: 143 YGQKVIRSTQGSNFHIDCFDNIDLVELIDEMHEFNIFATSLKAD--KYIEQLDNITGKVA 200

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YITQN 278
           ++ G EG G+  +      ++  + MPG  ++LNVS AA + + YI+ N
Sbjct: 201 VVFGNEGAGVSEEILSKVNNLLKISMPGRAESLNVSIAAGIVMHYISTN 249


>gi|171780263|ref|ZP_02921167.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281611|gb|EDT47046.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 218

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL+ V DP N+G ++R+A A   DG++ +++ +   +    +S  G+  H+P +  +N+
Sbjct: 77  LVLEDVQDPGNVGTMIRTADAAGLDGVLISEKTADIYNQKTLRSMQGSHFHLP-VWCTNV 135

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            +A QK+ S G   +   LS DS      E K +  AL++G EG G+  +  + A  +AH
Sbjct: 136 YEACQKLQSLGVPLVATTLSKDSVDYKTVEHKGE-FALVMGNEGNGISEQMTKQADILAH 194

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ A  + L+
Sbjct: 195 IIMPGQAESLNVAVATGIVLF 215


>gi|295094033|emb|CBK83124.1| rRNA methylase, putative, group 3 [Coprococcus sp. ART55/1]
          Length = 260

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
              +LD + DPHN+GAI+R+A      G+I  KR +   +A + K+++GA+ + P  +++
Sbjct: 112 FFFILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVT 171

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N++  ++++   G        D +   +  +    + L++G EG G+    +E    +  
Sbjct: 172 NISKTIEELKDRGMWFACADMDGELMYKCNLTG-SLGLVIGNEGSGVSRLVKEKCDYVVS 230

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 231 VPMKGDIDSLNASVAAGVLAY 251


>gi|239939998|ref|ZP_04691935.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291443427|ref|ZP_06582817.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291346374|gb|EFE73278.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
          Length = 256

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146
           P PV  V P+  +++ G   VH+G   +++  PL  P  D +   ++ ++V++ VND  N
Sbjct: 60  PAPVYAVAPELAERVTGYH-VHRGALASMQRKPL--PAADELLATARRVVVMESVNDHTN 116

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   G
Sbjct: 117 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAG 176

Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+ + L+ D+K     E    + +++AL+LGAEG GL  +    A     + M   + +L
Sbjct: 177 FRLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSL 236

Query: 264 N 264
           N
Sbjct: 237 N 237


>gi|329939002|ref|ZP_08288376.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329301887|gb|EGG45780.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 272

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 5/178 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            PV  V P+  +++ G   VH+G LA      L    D +R ++ ++V++ VND  NIGA
Sbjct: 77  VPVYVVDPELAERVTGYH-VHRGALASMRRKPLPAAADLLRGARRVVVMEAVNDHTNIGA 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ +   +        K + GA+  +PY R+     +L  +   GF  
Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEQWPGSLAAVTEAGFDL 195

Query: 210 IGLSSDS-KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + L+ D+  + L++    + D++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 196 LALTPDAGARSLDEAAPHRRDRVALMLGAEGDGLSRRALAAADEPVRIPMSHGVDSLN 253


>gi|124514779|gb|EAY56291.1| putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
           rubarum]
          Length = 192

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 11/145 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ +D V DP N+GA+LR+  A    G++  KR     S V AK++SGAL  IP IR+ N
Sbjct: 47  LVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTIPLIRVGN 106

Query: 195 LTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETAT 249
           L+ +L  +   G+      +G S+  + P         + +++G E KG+ RP  Q++  
Sbjct: 107 LSQSLMYLRKRGYGVASLALGGSTAYRDPFPA-----PLVVVVGEEEKGVSRPVLQQSDW 161

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            ++ L M G + +LN+S A  + LY
Sbjct: 162 KVS-LPMRGKVSSLNLSVALGIFLY 185


>gi|300789799|ref|YP_003770090.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
 gi|299799313|gb|ADJ49688.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
          Length = 253

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 19/244 (7%)

Query: 42  HTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            T  P++ FL  YG   V  AL +   ++ +++    A  R    A +        VP Q
Sbjct: 5   STISPKDRFLTVYGRKPVLEALADDGLRVDKVILADTA--RGPGAAEIQRAAKAAGVPVQ 62

Query: 100 T-----IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147
                 +  + G     QG+    A +L+P + A+       R    +++LD +  P N+
Sbjct: 63  RASAHRVKVLAGNGKQDQGV---LADVLAPRMRALSAALADRRPPSRVLLLDGITTPANV 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+A A   DG+I  +R   +   ++ K+++G     P +R  +  +A + +   GF
Sbjct: 120 GMILRTATAAGLDGVIVPRRGVAALDPLVVKASAGVAFRAPVLRCGSAREAAEMLAEAGF 179

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               L + ++  +       + A +LG E  G+  +  E  T    + MPG +++LNVS 
Sbjct: 180 GLYALGASARTTVFDVDLPQRAAFVLGGETAGVGAEVGELVTEWLSIPMPGDVESLNVSA 239

Query: 268 AAAV 271
           AAAV
Sbjct: 240 AAAV 243


>gi|294790826|ref|ZP_06755984.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
 gi|294458723|gb|EFG27076.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
          Length = 284

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 21/205 (10%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147
           +  PV       + KI G   +H+G          PT+ D  R++  + VL+++ D  N+
Sbjct: 83  YDIPVFVAGFDLLHKITGYR-LHRGALSAMRRWKLPTVEDICRDAHRVAVLENIVDYTNV 141

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-- 205
           GAI+RSA A + D ++ T   +       A+ + G +  +P+ RI          H+W  
Sbjct: 142 GAIMRSAAALNVDAVLLTPSCADPLYRRAARVSMGTVFQVPWTRIGG-----DNPHAWPQ 196

Query: 206 ---------GFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253
                    GF T+ ++ +D    L+Q +  K D++ALI G EG GL  +T   A     
Sbjct: 197 PSIHQLTDLGFTTVSMALTDDSISLDQLVSRKIDRLALIFGTEGDGLSRRTLAAADLTVK 256

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M   + +LNV+ ++AVA Y T  
Sbjct: 257 IPMSHQVDSLNVAASSAVAFYATMT 281


>gi|6324775|ref|NP_014844.1| Mrm1p [Saccharomyces cerevisiae S288c]
 gi|1346886|sp|P25270|MRM1_YEAST RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
           Full=21S rRNA [GM2251] 2'O-methyltransferase; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|431760|gb|AAA74564.1| ribosomal RNA methylase [Saccharomyces cerevisiae]
 gi|1420475|emb|CAA99414.1| PET56 [Saccharomyces cerevisiae]
 gi|285815081|tpg|DAA10974.1| TPA: Mrm1p [Saccharomyces cerevisiae S288c]
          Length = 412

 Score = 75.1 bits (183), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 136/341 (39%), Gaps = 94/341 (27%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58
           +  K +H  KL+    + K     NQKS H S+ +N               ++YG ++V 
Sbjct: 79  YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 133

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPF----PVKTVPPQTIDK----IVGKEAV 110
           AAL NPSR         N  +RL +   +P  F        V  + +DK    ++    V
Sbjct: 134 AALLNPSR---------NCHSRLLYHGTIPSKFLQIVDELKVTTELVDKHRLNLLTNYGV 184

Query: 111 HQGLALETAPL-----------------LS-----------------PTLDAVRNSQLLM 136
           H  +ALET PL                 LS                  T    +   L +
Sbjct: 185 HNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGL 244

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            LD + DPHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +    
Sbjct: 245 YLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPL 304

Query: 197 DAL---QKMHSWGFQTIGLSSDSKK-----------PLEQEIKNDKIALILGAEGKGLRP 242
           +     Q+M  W F T  L++ + +            L        + L++G E +G+R 
Sbjct: 305 EFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRT 364

Query: 243 KTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273
             +  +     +   G          I+ +LNVS A A+ +
Sbjct: 365 NLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262084581|gb|ACY20549.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 284

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 9/210 (4%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVP-----PQTIDKIVGKEAVHQGLALETAPLLSPT 125
            L     LA LD D   P    V  VP      + +  +VG       LA+   P +   
Sbjct: 68  FLGVDKRLAELDADLRTPS---VSGVPFYRASAEVMAAVVGFHLNRGVLAVARRPPVRTV 124

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            + + N++ + +L+ VND  NIG+I R+A     D ++     +        + + G   
Sbjct: 125 DEILANARSVAILEGVNDHENIGSIFRNAAGLGIDAVLFGAGCADPLYRRCVRVSMGHAL 184

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +P+ R       L  + + GF+ I L+ D +  PL Q ++  K+  ++GAEG GL    
Sbjct: 185 LVPFARFDEWPRGLDALRAGGFRLISLTPDPAAMPLAQAVEATKVGFLVGAEGPGLSAHA 244

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  A + M     +LNV+ AAA+A Y
Sbjct: 245 MAATDVRARIPMSRGTDSLNVATAAAIAFY 274


>gi|302671185|ref|YP_003831145.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395658|gb|ADL34563.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 249

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD++ DPHN+GAI+R+A      G+I  K  + S +A +AK+++GA+ + P  +++
Sbjct: 102 FIIILDNIEDPHNLGAIIRTANLAGAHGVIIPKHRAASLTATVAKASAGAINYTPVAKVT 161

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + ++ +   G              +  +K   I L++G EG G+    +E    +A 
Sbjct: 162 NIANTIEDLKDKGLWFACADMGGTTMYQLNLKG-PIGLVIGNEGSGVSRLVREKCDMIAS 220

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S A  V  +
Sbjct: 221 IPMKGDIDSLNASVACGVLAF 241


>gi|332521645|ref|ZP_08398098.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
           5H-3-7-4]
 gi|332042734|gb|EGI78934.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
           5H-3-7-4]
          Length = 244

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIG 148
           VP + ++++   +  HQG   + +P+     + + ++        L ++LD ++D  N G
Sbjct: 54  VPVEKLNRLT--KGNHQGAVAQISPIAFHDFETLVDNTIASGVTPLFLLLDQLSDVRNFG 111

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R+A      GI+  K+     +    K+++GA+  +P  ++ ++ DA+  + + G +
Sbjct: 112 AIIRTAECTGVHGIVIQKKGGAPVNGDTIKTSAGAVFKVPICKVDHIKDAMFHLQASGVK 171

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            I  +  +   +         A+++G+EG+G+ P   + A + A L + G I++LNVS A
Sbjct: 172 VIAATEKTNDTVFDVSFKQPCAIVMGSEGRGINPSVLKLADARAKLPLLGDIESLNVSVA 231

Query: 269 AAVALY 274
               LY
Sbjct: 232 CGAFLY 237


>gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
 gi|153794471|gb|EDN76891.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
          Length = 275

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 72/140 (51%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           LM+LD++ DP N+G I R+A A    GII ++      +    +S  GAL  +P++ + +
Sbjct: 128 LMILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRMPFVYVED 187

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + +  +     ++     D K   ++E      A ++G EG GLR +  + A +   +
Sbjct: 188 LRETIHTLKEKNIKSYAAHLDGKNTYDKEDYRQGTAFLIGNEGNGLREEIAQCADTWIRI 247

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + AA V ++
Sbjct: 248 PMCGQVESLNAAVAATVLMF 267


>gi|226324182|ref|ZP_03799700.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
 gi|225207731|gb|EEG90085.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
          Length = 159

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 76/149 (51%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LDA     LLMVLD++ DP N+G ILR+  A    G+I +       +  + +S  G++ 
Sbjct: 4   LDAQGRKPLLMVLDNLQDPGNLGTILRAGEAAGVTGVIMSHDCVDIYNPKVIRSTMGSVY 63

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P++ + +L + L+ +   G  +       K   +QE      A ++G EG GLR +  
Sbjct: 64  RMPFVYVEHLPETLEVLAEAGIHSYAAHLKGKNSYDQEDYTRGTAFLIGNEGNGLRDEVA 123

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + A     + M G +++LN + A++V ++
Sbjct: 124 DVAECYIKIPMCGEVESLNAAVASSVLMF 152


>gi|163816511|ref|ZP_02207875.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
 gi|158448211|gb|EDP25206.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
          Length = 264

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
              +LD + DPHN+GAI+R+A      G+I  KR +   +A + K+++GA+ + P  +++
Sbjct: 116 FFFILDEIEDPHNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVT 175

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N++  ++++   G        D +   +  +    + L++G EG G+    +E    +  
Sbjct: 176 NISKTIEELKERGMWFACADMDGELMYKCNLTG-SLGLVIGNEGNGVSRLVKEKCDYVVS 234

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I +LN S AA V  Y
Sbjct: 235 VPMKGDIDSLNASVAAGVLAY 255


>gi|254388527|ref|ZP_05003761.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326442462|ref|ZP_08217196.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197702248|gb|EDY48060.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 316

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P   +D++ G    HQGL L+  P        L+ +        L++ LD V DP N+GA
Sbjct: 125 PRPELDRMTGG-LNHQGLVLQVPPYEYAHPEDLAASAADHGEDPLIVALDGVTDPRNLGA 183

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RS  AF   G++  +R +   +A   K+++G     P  R +NLT AL+     G   
Sbjct: 184 VVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTV 243

Query: 210 IGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL++D +  + + E     + +++G+EGKGL     ET   +  + MPG  ++LN   A
Sbjct: 244 VGLAADGEHEVGDLEALGGPVVVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVA 303

Query: 269 AAVALY 274
           A V LY
Sbjct: 304 AGVVLY 309


>gi|255660253|ref|ZP_05405662.1| RNA methyltransferase [Mycoplasma genitalium G37]
          Length = 201

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 9/177 (5%)

Query: 111 HQGLA--LETAPLLSPT---LDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQ L   L+T  LL P    +  V N +   L++LD + DP+N GAILR+ +A   DGII
Sbjct: 25  HQELVAVLDTNQLLIPLDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGII 84

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLE- 221
             K      +  + K++ G++ +   ++++NL+  + K+   GF T+  + D   KP++ 
Sbjct: 85  FKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVSTLDPIWKPIDY 144

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++   K  LI+G E +G+     + A     + M   I +LNVS A  + L+  +N
Sbjct: 145 RKVDFAKKILIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAWKN 201


>gi|53714267|ref|YP_100259.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60682323|ref|YP_212467.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|253564783|ref|ZP_04842239.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|265766241|ref|ZP_06094282.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|52217132|dbj|BAD49725.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493757|emb|CAH08547.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|251946248|gb|EES86625.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263253909|gb|EEZ25374.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|301163797|emb|CBW23352.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 246

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + I++I  
Sbjct: 7   MIFGVRAVIEAIQ-AGKEIDKILVKKDIQSDLSKELFTALKGTLIPVQRVPVERINRITR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     +   ++LD + D  N GAI R+      
Sbjct: 66  KN--HQGVVAFISSVTYQKTEDLVPFLFEEGKNPFFVMLDGITDVRNFGAIARTCECAGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +      
Sbjct: 124 DAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKGDYD 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      + +I+GAE  G+             + M G I++LNVS AA + +Y
Sbjct: 184 YTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIY 238


>gi|325954869|ref|YP_004238529.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
           16922]
 gi|323437487|gb|ADX67951.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
           16922]
          Length = 249

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 15/196 (7%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVL 138
           +  P   VP + ++++ GK   HQG+    +P+     D++ N          +  L++L
Sbjct: 47  YEIPTSYVPVEKLNRLTGKN--HQGVYAFLSPI---EFDSIENVLPQIYERGKTPFLLIL 101

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V+D  N GAI R+A     D II   + S S +A   K+++GAL +IP  + +NL   
Sbjct: 102 DRVSDVRNFGAIARTAECVGIDAIIIPYKGSASVNADAVKTSAGALYNIPICKENNLKKT 161

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +  +   G      S  S   L        +A+I+G+E  G+     + +  +  L M G
Sbjct: 162 VDYLQQSGIVLAAASEKSDTYLYDVDFTTPLAIIMGSEEDGVSDALLKVSDYIIKLPMAG 221

Query: 259 IIKALNVSNAAAVALY 274
              +LNVS A    LY
Sbjct: 222 QTASLNVSVACGAILY 237


>gi|11499975|ref|NP_071221.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
 gi|3915500|sp|O30272|Y2399_ARCFU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase AF_2399
 gi|2650693|gb|AAB91264.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 224

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 1/147 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+     ++ LD+V D  NIGA +R+A  F   G++  KR   S      K+++GA+ HI
Sbjct: 72  ALTGGSFILFLDNVVDQRNIGACIRTAEFFGAAGVVLPKRRVGSIQEGAVKASAGAVFHI 131

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  R+ N   A++K+   GF T+    D +  LE        A+++G E +G+    ++ 
Sbjct: 132 PIARVENFASAIKKLKKLGFTTLAADLDGED-LEAVSLLLPAAVVIGGEDRGVSRPVKKQ 190

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  +   G + +LN+S AA + LY
Sbjct: 191 CDFVVKIPGVGKVNSLNLSVAAGIFLY 217


>gi|160893354|ref|ZP_02074141.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
 gi|156865046|gb|EDO58477.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
          Length = 251

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-----RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    A      +D +        Q   + +LD + DPHN+GAI+R+A      G+I
Sbjct: 72  HQGVIAHVAAYEYSAIDEIFAKAEEKGQPPFIFILDEIEDPHNLGAIVRTANLCGAHGVI 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +A + K+++GA+ + P ++++NL   + ++   G        D +      
Sbjct: 132 IPKRRAVGITATVVKASAGAIAYTPVVKVTNLAKTIDELKKRGMWFACADMDGELMYRCN 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    + L++G EG G+    +E    +  + M G I +LN S AA V  Y
Sbjct: 192 LTG-PMGLVIGNEGTGVSRLVKEKCDYVVSIPMSGDIDSLNASVAAGVLGY 241


>gi|291297886|ref|YP_003509164.1| RNA methyltransferase TrmH family, group 3 [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567106|gb|ADD40071.1| RNA methyltransferase, TrmH family, group 3 [Stackebrandtia
           nassauensis DSM 44728]
          Length = 339

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 9/172 (5%)

Query: 101 IDKIVGKEAVHQGLALETAPL----LSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRS 153
           +D++  + A+HQGL L+  P      +  L A        LL+ LD V DP N+GA +RS
Sbjct: 151 LDRLC-QGALHQGLGLQVPPFHYEEYADVLAAAGEHPQPPLLVALDGVTDPRNLGATIRS 209

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   G++  +R +   +A   ++++GA   +P  + +NLT A+Q+    G    GL 
Sbjct: 210 AAAFGAHGVVVPQRRAAGMTATAWRASAGAAARLPIAKATNLTRAIQQAQQAGLLVAGLD 269

Query: 214 SDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +D +  L +     D + L++G+EG+GL     E+      + +   +++LN
Sbjct: 270 ADGEIDLFDLPAAVDPLMLVVGSEGRGLSRLVGESCDLRVRIPIASAVESLN 321


>gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter
           thermophilus TK-6]
          Length = 240

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 11/153 (7%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALE 185
           DA++ +  ++VLDH+ DP N+G +LR+       G ++ T R SP  + V+ K+++G++ 
Sbjct: 83  DALKKNSFILVLDHLTDPQNVGNLLRTCEVLGGVGALLPTHRSSPI-NQVVVKASAGSVF 141

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLR 241
           H+   ++ +L+ AL+     G   I +    K     +I+   I    AL+LG+EG+G+ 
Sbjct: 142 HLKISKVPSLSKALKDFKKQGGWVISVERGGK-----DIRYTSIPLPCALVLGSEGEGVS 196

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               E +  +  + M G I +LNVS+A A+A++
Sbjct: 197 KSLLEISDLVLSIPMVGKINSLNVSSAGAIAMW 229


>gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
 gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
          Length = 268

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 1/149 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +R+++ + VL+ VND  NIG++ R+A     D I+     +        + + G    
Sbjct: 113 DVLRDARTVAVLEGVNDHENIGSMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALR 172

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P+ +I      L  +   GFQ I L+ +   P L + +  +++AL+LGAEG GL     
Sbjct: 173 VPFAQIPEWPRGLNILRDRGFQLISLTPNPSAPTLAEAMTGERVALLLGAEGPGLTEDAM 232

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 A + M     +LNV+ AAA+A Y
Sbjct: 233 RVTDVRARIPMSAGTDSLNVATAAAMAFY 261


>gi|320547387|ref|ZP_08041676.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447983|gb|EFW88737.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 246

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 13/204 (6%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQ 133
           N     D+   + H   V  V P+ + ++   +   QG+  E A  + P   L A R   
Sbjct: 48  NIFVLEDFADRVEHMSNVTFVTPEVLKELTDSKT-PQGIIAEVAMPILPLANLKAGR--- 103

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL+ V DP N+G ++R+A A   DG++ + + +   +    +S  G+  H+P  R +
Sbjct: 104 -YLVLEDVQDPGNVGTMIRTADAAGLDGVLISDKSADIYNQKTLRSMQGSHFHLPVWR-T 161

Query: 194 NLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250
           N+ +A + + + G   I   LS DS     + +K+D   AL++G EG G+  K    A  
Sbjct: 162 NVYEACETLQNLGVPIIATTLSKDSVD--YKTVKHDGNFALVMGNEGNGISNKMTNQADV 219

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +AH+ MPG  ++LNV+ A  + L+
Sbjct: 220 LAHIIMPGQAESLNVAVATGIVLF 243


>gi|153810011|ref|ZP_01962679.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
 gi|149834189|gb|EDM89269.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
          Length = 275

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 17/196 (8%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149
            PV T   +T+ K+ G  A+ +G+         P+++ + +NS+ + +L+++ +P NIGA
Sbjct: 79  IPVYTAEYETLVKMTGY-ALARGMLCAMKRRTLPSVEEICKNSRRVAILENIVNPTNIGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT----DALQKMHSW 205
           I RSA A   D ++ T   S       A+ + G +  IP+      T    D ++ + + 
Sbjct: 138 IFRSAAALHMDAVLLTGGCSNPLYRRAARVSMGTVFQIPWTYFEKKTSWPEDGMKAIQNL 197

Query: 206 GFQTIGL-------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           GF+T+ +       S D  + L QE    K+A++LG EG GL  +T         + M  
Sbjct: 198 GFKTVAMALRDDSYSIDDPELLAQE----KLAIVLGTEGDGLASETIADCDYTVKIPMAH 253

Query: 259 IIKALNVSNAAAVALY 274
            + +LNV+ A+AVA +
Sbjct: 254 GVDSLNVAAASAVAFW 269


>gi|239986481|ref|ZP_04707145.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
          Length = 272

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146
           P PV  V P+  +++ G   VH+G   +++  PL  P  D +   ++ ++V++ VND  N
Sbjct: 76  PAPVYAVAPELAERVTGYH-VHRGALASMQRKPL--PAADELLATARRVVVMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   G
Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAG 192

Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+ + L+ D+K     E    + +++AL+LGAEG GL  +    A     + M   + +L
Sbjct: 193 FRLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSL 252

Query: 264 N 264
           N
Sbjct: 253 N 253


>gi|254245541|ref|ZP_04938862.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
           PC184]
 gi|124870317|gb|EAY62033.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
           PC184]
          Length = 106

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 60/95 (63%)

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGA + +PYI ++NL  AL+++   G   IG S ++   L +   +  +AL++GAEG+G
Sbjct: 2   ASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLYETKLDGPVALVMGAEGEG 61

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +R  T++T   +  + M G +++LNVS A+ V LY
Sbjct: 62  MRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLY 96


>gi|298736242|ref|YP_003728768.1| TrmH family RNA methyltransferase [Helicobacter pylori B8]
 gi|298355432|emb|CBI66304.1| RNA methyltransferase, TrmH family [Helicobacter pylori B8]
          Length = 227

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG H ++  LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   VYGKHVITHLLNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I 
Sbjct: 57  LAKGGNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E  +
Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|291456687|ref|ZP_06596077.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
 gi|291381964|gb|EFE89482.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
          Length = 292

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 101/221 (45%), Gaps = 32/221 (14%)

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALETAPLLSPTLDAVRNSQLLMVLDH 140
           W A++P    V    P+ + ++ G   +H+G   A+   PL S   +  ++++ + V+++
Sbjct: 78  WGADIP----VYVASPEQLKRLTGYR-LHRGALCAMRRWPLPS-VAEVCKDARRVAVMEN 131

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT-DAL 199
           + D  N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+    D  
Sbjct: 132 IVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGRNEDGT 191

Query: 200 QKMHSW-----------GFQTIGLSSDSKK------------PLEQEIKNDKIALILGAE 236
           +  H W           GF T+ ++ + +             P E     +K+ALI G E
Sbjct: 192 ENKHYWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIEKLALIFGTE 251

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GL   T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 252 GDGLSHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 261

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           TLD   N    ++ D V DP N+G I+R+A A   DGII TK      +    +S  G+L
Sbjct: 105 TLDL--NGSFYLLCDKVQDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRSTMGSL 162

Query: 185 EHIP-YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            ++P +    N+T  ++ +    F+ +  S D+ K   QE    K+ L +G EG G+  +
Sbjct: 163 FYVPVHYDDENMT-LVKSLKDKKFKIVVTSLDTDKDFFQESLKGKVLLTVGNEGNGVSDE 221

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E A +   + MPG  ++LNV+ A +V +Y
Sbjct: 222 VYELADTKVKIPMPGNAESLNVAIATSVIMY 252


>gi|197302656|ref|ZP_03167710.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
           29176]
 gi|197298238|gb|EDY32784.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
           29176]
          Length = 271

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 84/154 (54%), Gaps = 8/154 (5%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            +N++ + VL++V +P N+GAI RSA A + D ++ T   S       ++ + G +  IP
Sbjct: 114 CQNAKKVAVLENVMNPTNVGAIFRSAAALNMDAVLLTGGCSNPLYRRASRVSMGTVFQIP 173

Query: 189 YIRISN-----LTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGL 240
           +  I       + + ++++H  GFQT  + LS DS    ++ ++ + K+A+ILG EG GL
Sbjct: 174 WTFIGEKQEDWIENGIRRLHGLGFQTAALALSDDSVSIDDKRLREEKKLAIILGTEGDGL 233

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +T         + M   + +LNV+ A+AVA +
Sbjct: 234 AEQTIAECDYTVKIPMTHGVDSLNVAAASAVAFW 267


>gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 235

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 16/235 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP--QTIDKIVGK 107
           ++YG   V  A+ N   ++ ++   KNA   +     +     V TV    + ++++ G 
Sbjct: 3   YIYGRGPVMEAIKN--EEVEKVYVGKNASGSIKKILGMARDAKVPTVTSDNEKLEELAGT 60

Query: 108 EAVHQGLA--------LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +  HQ +         +E   L+    D  +    + +LD + DPHN GAI RS   F  
Sbjct: 61  KN-HQAVVALVSDFEYIELEDLIRKLED--KEDARIFILDKIEDPHNFGAIARSCNFFGI 117

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II   R + + +  + KS++GA+  I   ++SN++ ++ K+   GF       + +  
Sbjct: 118 DAIIFPNRRAATVNDTVVKSSAGAIYDIDVCKVSNISQSIDKLKEAGFWIYATDLEGEDI 177

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E +    K A+++G EGKG+     + +     +       +LN S AAA+ +Y
Sbjct: 178 RECDFSG-KAAVVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMY 231


>gi|206602427|gb|EDZ38908.1| Putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 192

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 11/145 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ +D V DP N+GA+LR+  A    G++  KR     S V AK++SGAL  IP IR+ N
Sbjct: 47  LVAVDGVQDPRNLGALLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTIPLIRVGN 106

Query: 195 LTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETAT 249
           L+ +L  +   G+      +G S+  + P         + +++G E KG+ RP  Q++  
Sbjct: 107 LSQSLIYLRKQGYGVASLALGGSTAYRDPFPA-----PLVIVVGEEEKGVSRPVLQQSDW 161

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            ++ L M G + +LN+S A  + LY
Sbjct: 162 KVS-LPMRGKVSSLNLSVALGIFLY 185


>gi|328875034|gb|EGG23399.1| hypothetical protein DFA_05531 [Dictyostelium fasciculatum]
          Length = 487

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 15/162 (9%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----------LDAVRNSQLLMVLDH 140
           PV  V  Q +D    K  VH G+ ++ +PL + +           +D +++  L++ LD 
Sbjct: 285 PVYPVKKQLLD-TFSKWNVHNGMVMDCSPLTAESIDKLQVITKEAMDKLKSPPLVVALDE 343

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N GAI+R+   F   G++TT ++S   + V +K+++GALE  P  +  ++   L+
Sbjct: 344 IWDPQNTGAIIRTCHFFGVSGVVTTDKHSSPLTPVASKASAGALEDTPIYKTMSMYGFLK 403

Query: 201 --KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
             K + W      L  DS KPL          L++G EG G+
Sbjct: 404 GSKENGWKIMGTSLGEDS-KPLNSVKLTQPTILVIGNEGFGV 444


>gi|294814058|ref|ZP_06772701.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294326657|gb|EFG08300.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 363

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 9/186 (4%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P   +D++ G    HQGL L+  P        L+ +        L++ LD V DP N+GA
Sbjct: 172 PRPELDRMTGG-LNHQGLVLQVPPYEYAHPEDLAASAADHGEDPLIVALDGVTDPRNLGA 230

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RS  AF   G++  +R +   +A   K+++G     P  R +NLT AL+     G   
Sbjct: 231 VVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTV 290

Query: 210 IGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL++D +  + + E     + +++G+EGKGL     ET   +  + MPG  ++LN   A
Sbjct: 291 VGLAADGEHEVGDLEALGGPVVVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVA 350

Query: 269 AAVALY 274
           A V LY
Sbjct: 351 AGVVLY 356


>gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 268

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 1/149 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +R+++ + VL+ VND  NIG++ R+A     D I+     +        + + G    
Sbjct: 113 DVLRDARTVAVLEGVNDHENIGSMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALR 172

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P+ +I      L  +   GFQ I L+ +   P L + +  +++AL+LGAEG GL     
Sbjct: 173 VPFAQIPEWPRGLNILRDRGFQLISLTPNPAAPTLAEAMTGERVALLLGAEGPGLTEDAM 232

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 A + M     +LNV+ AAA+A Y
Sbjct: 233 RVTDVRARIPMSAGTDSLNVATAAAMAFY 261


>gi|62290470|ref|YP_222263.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700394|ref|YP_414968.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|237815979|ref|ZP_04594976.1| RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|254697915|ref|ZP_05159743.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730805|ref|ZP_05189383.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
           292]
 gi|260758525|ref|ZP_05870873.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762349|ref|ZP_05874692.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|62196602|gb|AAX74902.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616495|emb|CAJ11562.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|237789277|gb|EEP63488.1| RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260668843|gb|EEX55783.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672781|gb|EEX59602.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 276

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 14/278 (5%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R  ++ + + L  + + SA 
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58

Query: 61  LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116
               S     LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+  
Sbjct: 59  FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +         
Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG 
Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           EG+GL  +  E   + A + M     +LNV+ A+ +AL
Sbjct: 233 EGEGLPSRLLERLET-ARIPMSKTFDSLNVATASDIAL 269


>gi|153008909|ref|YP_001370124.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151560797|gb|ABS14295.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 275

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)

Query: 71  LLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125
           LL  +N LA L    + LP   PV +VP   +D + G   VH+G LA+   +T P L   
Sbjct: 63  LLVLENRLAGLGEQLSQLPSEVPVYSVPQTVMDAVAGFH-VHRGILAVGRRKTPPSLQAM 121

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD +    L++VL  +++  N+G+I R+A AF  D ++              + + GA  
Sbjct: 122 LDTLPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDDTCCDPLYRKAIRVSVGATL 181

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY    ++ + +  +    F  + LS  S   +    K+ + AL+LG EG+GL P+  
Sbjct: 182 KVPYFHGGSIDEIIAALGDADFNLLALSPSSSLSVYDATKHGRQALLLGTEGEGLPPRLL 241

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E   + A + M     +LNV+ A+ +AL
Sbjct: 242 EKLQT-ARIPMSTAFDSLNVATASGIAL 268


>gi|302872439|ref|YP_003841075.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 253

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DP N G+I+RSA      GI+   R S   +  + K+++GA+E++   R+ 
Sbjct: 95  FLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAIEYMKIARVV 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G       + S KP+ +        +++G+EGKG+    +E A  +  
Sbjct: 155 NLRRTIEELKEKGIWVFAADASSPKPVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIK 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G I + N S AA +  +
Sbjct: 215 IPQKGYINSFNASVAAGIIFF 235


>gi|296270633|ref|YP_003653265.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296093420|gb|ADG89372.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 275

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 21/261 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPE-NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           DY +++  + + R + + E  LF+     V         ++  +L T   L RL   A++
Sbjct: 15  DYVRLR--DSELRKSLEAERGLFIAEGEKVIRRAVATGHRLRSVLTTAKWLDRL---ADV 69

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGL--ALE------TAPLLSPTLDAVRNSQLLMVLD 139
               P   V  + +  I G + VH+G   A+E       A LL+           +++L+
Sbjct: 70  IGDVPTYLVSDEVMRGIAGFQ-VHRGALAAVERPELPSVAGLLTGPGSGEGPPGRILILE 128

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GAI R A A   D II + R +        K + GA+  IPY R+ +    L
Sbjct: 129 DLVDHGNVGAIFRCAAALGVDAIILSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGL 188

Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPK-----TQETATSMAH 253
            ++ + GF+ + L+ D S  PL +    +++AL+LG+EG GL  +      +     M+ 
Sbjct: 189 GEVRAAGFRLLALTPDQSAVPLHEAELGERVALLLGSEGDGLSARWLDLADERVCIPMSP 248

Query: 254 LHMPGIIKALNVSNAAAVALY 274
             M   + +LNV  AAA+A +
Sbjct: 249 AAMARGVDSLNVVAAAAIACH 269


>gi|315281992|ref|ZP_07870501.1| RNA methyltransferase [Listeria marthii FSL S4-120]
 gi|313614371|gb|EFR88006.1| RNA methyltransferase [Listeria marthii FSL S4-120]
          Length = 252

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  AL      + +LL +       +W   L
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEW---L 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V  +  + I  ++ +    QG+         P +  +   +LL+V D V DP N+
Sbjct: 65  KGDYDVFEISAE-ISHLISETMTEQGV-FAVVATSEPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  +  +   +  + +S  G+  HIP I+ ++L D +  +   G 
Sbjct: 122 GTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFDWIANLEEEGV 180

Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG +  D  K L    K + +AL++G EG G+ P+ Q+  +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|194217234|ref|XP_001917920.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Equus caballus]
          Length = 355

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 22/187 (11%)

Query: 110 VHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+ +E +PL        R +       QL ++L+ + DP N+GA+LRSA     D +
Sbjct: 117 VHQGVCMEVSPLRPLPWTESREARPGDDPQQLWLILEGLQDPRNLGAVLRSAYFLGVDKV 176

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTIGL-----SS 214
           IT++R S   + V++K+++GA+E +      +L   LQ     G+    T+G      S 
Sbjct: 177 ITSRRNSCPLTPVVSKASAGAVEVMDVFSTDDLAGFLQVKARQGWLVAGTVGCPGPETSL 236

Query: 215 DSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKALNVSN 267
            S+ P+   ++   +    L+LG EG GL  + Q +     T +    +P  +++LNVS 
Sbjct: 237 SSEMPITSCLEFVWDQPTLLVLGNEGSGLSQEVQASCQVLLTILPGRQLPPGLESLNVSV 296

Query: 268 AAAVALY 274
           A  + L+
Sbjct: 297 ATGILLH 303


>gi|308182709|ref|YP_003926836.1| RNA methyltransferase [Helicobacter pylori PeCan4]
 gi|308064894|gb|ADO06786.1| RNA methyltransferase [Helicobacter pylori PeCan4]
          Length = 227

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 104/229 (45%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   ++  LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVITHLLNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+       L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I 
Sbjct: 57  LAKGGNHQGVLARVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+  + N+ D + ++ + GF  +G S      +E  +
Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVVPNMLDLINELKTSGFLCLGASMQGSSQVEN-L 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|296125362|ref|YP_003632614.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
           DSM 12563]
 gi|296017178|gb|ADG70415.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
           DSM 12563]
          Length = 237

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 6/187 (3%)

Query: 93  VKTVPPQTIDKIVGK-----EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           +K V    ++KIVGK       + +   +     L   L+  +++ L+ +LD + D HN+
Sbjct: 45  IKNVDKNEMEKIVGKVYSIAADIKENAEIGIENFLQKALEK-KDNPLIFILDSITDVHNL 103

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+A  F   GII  K  S   +  + + ++GA  H+P    +NL   ++ M   GF
Sbjct: 104 GAIIRNAYFFGSSGIIIPKDNSAPINEKVYEISAGAAYHLPISIETNLNRTIELMKDKGF 163

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                S + +  LE    N   A+ILG E  G+R   ++ +     ++      +LNVS 
Sbjct: 164 WIYYASEEGETSLEDFKFNTPTAIILGNEHSGVRDILKKNSDGSIIINKSNDFDSLNVSA 223

Query: 268 AAAVALY 274
           A+AV  Y
Sbjct: 224 ASAVIAY 230


>gi|155371979|ref|NP_001094596.1| rRNA methyltransferase 1, mitochondrial [Bos taurus]
 gi|154425820|gb|AAI51495.1| MRM1 protein [Bos taurus]
 gi|296477019|gb|DAA19134.1| mitochondrial rRNA methyltransferase 1 homolog [Bos taurus]
          Length = 360

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 22/193 (11%)

Query: 104 IVGKEAVHQGLALETAPLLS-PTLDA--VRNS----QLLMVLDHVNDPHNIGAILRSAVA 156
           ++ +  VHQG+ +E +PL   P  +A   R      QL +VL+ + DP N+GA+LRSA  
Sbjct: 116 VLCRHQVHQGVCMEVSPLRPRPWAEAEVARPGDDPQQLWLVLEGLQDPRNLGAVLRSAHF 175

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG----- 211
              D +IT++R S   + V++K+++GA+E +      +L   LQ     G+   G     
Sbjct: 176 LGVDKVITSRRNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQARARQGWLVAGTVGCP 235

Query: 212 ---LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIK 261
              ++  SK P+ + +    +    L+LG EG GL    Q +     T +    +P  ++
Sbjct: 236 GPEIALSSKIPVTRCLDFLWDRPTLLVLGNEGSGLSRAVQASCQLLLTILPGRQLPPGLE 295

Query: 262 ALNVSNAAAVALY 274
           +LNVS AA + L+
Sbjct: 296 SLNVSVAAGILLH 308


>gi|183601561|ref|ZP_02962931.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219683904|ref|YP_002470287.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190940|ref|YP_002968334.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196346|ref|YP_002969901.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219167|gb|EDT89808.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621554|gb|ACL29711.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249332|gb|ACS46272.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250900|gb|ACS47839.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178682|gb|ADC85928.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793929|gb|ADG33464.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 290

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 18/212 (8%)

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVN 142
           D +     PV    P+ + +I G   +H+G          PT+ +   N+  + VL+++ 
Sbjct: 75  DEHWGDDIPVYVASPEQLRRITGYR-LHRGALAAMHRWELPTVAEVCANATRIAVLENIV 133

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------ 196
           D  N+GAI+RSA A   D ++ T   S        + + G +  +P+ RI          
Sbjct: 134 DHTNVGAIMRSAAALDVDAVLVTPSCSDPLYRRAIRVSMGTVFQVPWTRIGGDDVHYWPW 193

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKN---------DKIALILGAEGKGLRPKTQE 246
             L+++H  GF T  ++ SD    L+  +           DK+ALI G EG GL   T  
Sbjct: 194 QGLEELHGLGFTTAAMALSDDSISLDDLVWRLHANDNTHIDKLALIFGTEGDGLSRHTIA 253

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            A     + M   + +LNV+ ++AVA Y T++
Sbjct: 254 NADLTVKIPMSHDVDSLNVAASSAVAFYSTRD 285


>gi|182439778|ref|YP_001827497.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780442|ref|ZP_08239707.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468294|dbj|BAG22814.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326660775|gb|EGE45621.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 272

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 94/180 (52%), Gaps = 7/180 (3%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P PV  V P+  +++ G   VH+G   +++  PL + + + +  ++ +++++ VND  NI
Sbjct: 76  PAPVYAVAPELAERVTGYH-VHRGALASMQRKPLPA-SEELLATARRVVIMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+     AL+ +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKALEGVREAGF 193

Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + + L+ D+K     E    + +++AL+LGAEG GL  +    A +   + M   + +LN
Sbjct: 194 RLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTQALMAADAWVRIPMAHGVDSLN 253


>gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
           27755]
 gi|166029498|gb|EDR48255.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
           27755]
          Length = 264

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD + DP N+G I+R+A      GI+ ++      +  + +S  GA   +P+  + 
Sbjct: 117 LLLVLDQIQDPGNLGTIVRTAEGAGVTGIVMSQDCVDMYNPKVVRSTMGAAYRVPFCYVD 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L + +++M   G  T     + K   ++E      A ++G EG GLR +  + A     
Sbjct: 177 DLAEEVKQMKEAGICTYAAHLEGKNSYDEEDYRKASAFLIGNEGNGLRDEVADQAQVYIR 236

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + A A+  +
Sbjct: 237 IPMKGQVESLNAAVATAILTF 257


>gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129]
 gi|2500862|sp|P75424|Y355_MYCPN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
           homolog
 gi|1674172|gb|AAB96129.1| tRNA/rRNA methyltransferase-like protein [Mycoplasma pneumoniae
           M129]
          Length = 242

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           L+T   L    D+   S L+M L  + DPHN GAILR+ +A   DGII  K      ++ 
Sbjct: 79  LKTIEQLIQITDSKSTSTLVM-LHEIQDPHNFGAILRTCMAAEVDGIIFKKHNQAPINST 137

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLE-QEIKNDKIALIL 233
           + +++ G + +   ++++NL+ A+  +   GF T+  + D + KP + +++  DK  L++
Sbjct: 138 VIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERLKPKDYRQVDFDKRILLV 197

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G E KGL     + A     + M   + +LNVS A  + L+
Sbjct: 198 GNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 238


>gi|224282928|ref|ZP_03646250.1| tRNA/rRNA methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|311064212|ref|YP_003970937.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
           PRL2010]
 gi|313140087|ref|ZP_07802280.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
 gi|310866531|gb|ADP35900.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
           PRL2010]
 gi|313132597|gb|EFR50214.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 292

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 22/206 (10%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            PV    P+ + ++ G   +H+G   A+   PL S   +  R+++ + V++++ D  N+G
Sbjct: 82  IPVYVASPEQLRQLTGYR-LHRGALSAMRRWPLPS-VEETCRDARRVAVMENIVDHTNVG 139

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKM 202
           A++RSA A   D ++ T           A+ + G +  IP+ RI            L+++
Sbjct: 140 ALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRGLEEL 199

Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATS 250
            S GF T+ ++ SD    L++  +            DK+ALI G EG GL   T   A  
Sbjct: 200 RSLGFTTVAMALSDDSISLDELTRRLNNSPESADHIDKLALIFGTEGDGLSRHTIAGADL 259

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M   + +LNV+ ++AVA Y T
Sbjct: 260 TVKIPMSHGVDSLNVAASSAVAFYAT 285


>gi|296122016|ref|YP_003629794.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           limnophilus DSM 3776]
 gi|296014356|gb|ADG67595.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           limnophilus DSM 3776]
          Length = 271

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 3/175 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           HQGLA           + +  +QL   L++LD + D  N+GAI+R A A    GI+  ++
Sbjct: 96  HQGLAARMPEFPYADFEGLFQAQLPALLVILDGIQDSFNLGAIIRCAEALGAGGIVLPEK 155

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                ++  A+S++GA+  +P  R+  L  A+ ++ S G + +  +  S++ L   +   
Sbjct: 156 GQSGVNSQAARSSAGAVNFLPIYRVPALDRAIDQLKSRGMKILAATEKSEQSLWNVVIPA 215

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + LI+G EGKG+             + M G   +LN + AA + L   Q    K
Sbjct: 216 PLCLIIGNEGKGVSSALLSACDIQVRIPMAGQTSSLNAAVAAGILLAEIQRQSLK 270


>gi|15644487|ref|NP_229539.1| hypothetical protein TM1741 [Thermotoga maritima MSB8]
 gi|4982318|gb|AAD36806.1|AE001812_16 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 242

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 4/167 (2%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           HQG+  +       +++ +  ++   L+++LD + DPHN+GAI+R++V    +GII  K 
Sbjct: 65  HQGVVFDIGEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIIIPKD 124

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K ++G +       ++NL   ++++   G  T     D   P+ +E    
Sbjct: 125 KSVKVTETVVKVSAGTVFRARIAVVTNLARTIEELKEKGVWTYASDIDG-TPIYEEDFTF 183

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A + G EG+G+R   +E    +  + M   I +LNVS +  V L+
Sbjct: 184 PTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLF 230


>gi|256380292|ref|YP_003103952.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
 gi|255924595|gb|ACU40106.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
          Length = 248

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 117/236 (49%), Gaps = 7/236 (2%)

Query: 46  PENLFL--YGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQT 100
           P++ F+  YG   V  AL++P  ++ ++L  + A    A+   DA       V+    Q 
Sbjct: 5   PKDRFVTVYGRKPVLEALDDPRLEVDKVLMAEGARGPAAKEILDAASRRGVRVQRATAQR 64

Query: 101 IDKIVGKEAVHQG-LALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFS 158
           +  + G     QG LA   AP ++P   A+ +  + +++LD +  P N+G ILR+A A  
Sbjct: 65  VKVLAGNGRHDQGVLADVVAPRMAPLALALESRPRGVLLLDGITTPANVGMILRTATAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            +GI+  +R   S   ++ K+++G     P +R     +A  ++ + G+    L + +K+
Sbjct: 125 VEGIVVPRRGVASIDPLVVKASAGVAFRAPVLRCGTAAEAAAQLRAAGYPLFALDASAKR 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +      ++ A +LG+E  G+    +E  T    + M   +++LNV++AAAV  +
Sbjct: 185 SVYAAELPERAAFVLGSETAGVSDGVREHVTDWLSIPMAAGVESLNVASAAAVLCF 240


>gi|149276383|ref|ZP_01882527.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
 gi|149232903|gb|EDM38278.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
          Length = 255

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 25/254 (9%)

Query: 38  QKSRHTSQPE--NLFLYGVHTVSAALN---NPSRKIFQLLATKNALARL-----DWDANL 87
           + SR  ++P+  N F++G+ +V  A+    +      Q   T   +  L     D DA  
Sbjct: 2   ENSRRPARPKENNEFIFGIRSVIEAIKAGKDIESIYIQRGLTGGIILELKALLKDVDA-- 59

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDH 140
               PV  VP + ++++  K   HQG+    + +       + P +     + L+++LD 
Sbjct: 60  ----PVHNVPVEKLNRMTQKN--HQGVIAVISSITFQKIEDIIPAVYEKGETPLILILDG 113

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+GAI R+A       I+   + S   +A   K+++GAL  IP  R  NL     
Sbjct: 114 ITDVRNMGAIARTAACAGVHAIVVPTKNSAQINADAIKTSAGALFTIPVCRHPNLHKTAL 173

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   G Q +  +  +   +         A+++GAE +G+  +    A  +A + M G I
Sbjct: 174 FLQECGLQIVACTEKTNDLIYAPDYTTPTAIVMGAEDEGISNEIMRMANHLAKIPMIGEI 233

Query: 261 KALNVSNAAAVALY 274
            +LNVS +A V LY
Sbjct: 234 SSLNVSVSAGVILY 247


>gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 253

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 74/145 (51%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +  L++LD + DP N G+I+RSA      GI+   R S   +  + K+++GA+E++  
Sbjct: 91  KEAPFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKI 150

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R+ NL   ++++   G       + S KP+ +        +++G+EGKG+    +E A 
Sbjct: 151 ARVVNLRRTIEELKEKGIWVFAADASSPKPVYECDFTIPTCIVIGSEGKGISRLVKEGAD 210

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  +   G + + N S AA +  +
Sbjct: 211 FLIKIPQKGYVNSFNASVAAGIIFF 235


>gi|256848250|ref|ZP_05553693.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714848|gb|EEU29826.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 289

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALE---TAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNI 147
           P+  +  Q I ++ G   +   LA       P  +  L A+ N+   + +L+H+ +P NI
Sbjct: 88  PIYVINDQQIRQLAGYNLLRGALAAMYRVQRPSFADFLKALPNAHPRIAILEHIVNPANI 147

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN---LTDALQKMHS 204
           GAI RSA A   DG+I T   +       ++ + G +  +P+  I      T+ +  +H 
Sbjct: 148 GAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQVPWTYIDAKIWQTEGISLLHR 207

Query: 205 WGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            G+QT  ++   +  +    Q +K DK+A+ILG+EG GL  +T   +     + M   + 
Sbjct: 208 LGYQTAAMALRHNTIRIDDPQLVKIDKLAVILGSEGPGLEERTIMQSDFSIKIPMATGVD 267

Query: 262 ALNVSNAAAVALY 274
           +LNV+ A+A+A +
Sbjct: 268 SLNVAAASALAFW 280


>gi|254457298|ref|ZP_05070726.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
           bacterium GD 1]
 gi|207086090|gb|EDZ63374.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
           bacterium GD 1]
          Length = 226

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +Y    V   + N   KI  L   K+ + + ++   +   F VK +P     K+  K 
Sbjct: 1   MLIYAKQPVQYIIKNYPNKIRTLYLAKD-VDKKEYSELMKMNFEVKRIPADAAGKMC-KN 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A HQG+  E         ++  +   ++VL  + D  NIGAI+R+A A   + I+     
Sbjct: 59  ANHQGILAEVDDYELHPFNSFLDKDFVLVLSGLTDVGNIGAIVRTAYALGVEAIVACGIK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   V+ ++++GAL  +P+    N+ D +  + + GF   G         + +IK  K
Sbjct: 119 KLNFEPVM-RTSTGALFDMPFALQHNIHDVMNDLKTSGFCIYGADMGGTDIRDVKIKQ-K 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL+LG EG+GL  +       +  + M     +LNVS A A+ +
Sbjct: 177 RALVLGNEGEGLTSRIVSKLDEVVSIQMSHDFDSLNVSVAGAILM 221


>gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 288

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 5/198 (2%)

Query: 82  DWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           + DA+L  P     P      + + +++G       LA    P+    +D + +++ + V
Sbjct: 86  ELDADLRDPSLRGVPFYRASAEVMAEVIGFHLNRGVLAAARRPVERTVVDVIEHARTVAV 145

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ VND  NIG+I R+A     D ++     +        + + G    +P+ +  +   
Sbjct: 146 LEGVNDHENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSMGHALLVPFAKSQDWPG 205

Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L  +   GF T+ L+  +   PL   +   K+A ++GAEG GL   T       A + M
Sbjct: 206 DLDVLRDSGFTTVALTPGEGSVPLAGAVSGGKVAFLVGAEGPGLAEHTMRRCDVRARIPM 265

Query: 257 PGIIKALNVSNAAAVALY 274
                +LNV+ AAAVA Y
Sbjct: 266 SRGTDSLNVATAAAVAFY 283


>gi|291519018|emb|CBK74239.1| rRNA methylase, putative, group 3 [Butyrivibrio fibrisolvens 16/4]
          Length = 249

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 111 HQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    A      L   L A R       L++LD++ DPHN+GAI+R+A      G++
Sbjct: 69  HQGVIAYAASYDYAELDDILAAAREKGEDPFLIILDNIEDPHNLGAIIRTANQAGAHGVV 128

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +A +AK+++GA+ + P  +++N++  ++++   G   +          +  
Sbjct: 129 IPKHRAVGLTATVAKASAGAINYTPVAKVTNISKTMEELKEQGMWFVCADMGGTTMYDLN 188

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    I L++G EG G+    ++    +A + M G I +LN S A  V  Y
Sbjct: 189 LTG-SIGLVIGNEGHGVSDLVKKNCDMIASIPMYGDIDSLNASVACGVLAY 238


>gi|154492222|ref|ZP_02031848.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
           43184]
 gi|154087447|gb|EDN86492.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
           43184]
          Length = 249

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 117/241 (48%), Gaps = 19/241 (7%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK 103
           EN  ++G+  V  A+    ++I ++L  +     L+R  ++       PV+ VP + +D+
Sbjct: 3   ENEMVFGIRAVIEAIQ-ADKEIDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQG-------LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG       +  E    + P +     +  +++LD V D  N GAI R+   
Sbjct: 62  LTRKN--HQGVIAFIPAITYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   R S + +A   K+++GAL  +   +  ++T+A++ + + G +   + + S
Sbjct: 120 AGVDAIVIPSRGSVTVNADAIKTSAGALHVLSVCKEKSITEAIRFLQASGVK---VYAAS 176

Query: 217 KKPLEQ--EIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +K  E    IK D  +A+++GAE  G+         SM  +   G I +LNVS A+++ +
Sbjct: 177 EKAFENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILI 236

Query: 274 Y 274
           Y
Sbjct: 237 Y 237


>gi|195952691|ref|YP_002120981.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932303|gb|ACG57003.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 251

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +      +VLDH+ DP N+G+I R+   F   G++  K  S   +AV+ KS+SGA+ H+ 
Sbjct: 93  IEEKGFFVVLDHITDPQNVGSIARTVEVFGGIGLLIPKDRSAPINAVVVKSSSGAIFHLK 152

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             +  +++ A++     G     L    K   + +     + ++LG+EG+G+     E +
Sbjct: 153 ISKTPSISKAIKTFKEMGGWVYALEKGGKDITKVDFAYP-MCIVLGSEGEGVSKNVLEHS 211

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M G + +LNVS A A+ L+
Sbjct: 212 DVRVSIPMKGKVTSLNVSAAGAICLW 237


>gi|117928367|ref|YP_872918.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
 gi|117648830|gb|ABK52932.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
          Length = 304

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 11/192 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           PV    P+ +  + G   VH+G LA      LS   + +R S+ ++VL+ VN+  N+GA+
Sbjct: 108 PVYVGAPEVLQSVTGFH-VHRGALAAFARRPLSSVEEILRTSRRIVVLEDVNNHTNLGAV 166

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R A A   DG++ + R +        + + GA+  IPY R     D L  + +  F+ +
Sbjct: 167 FRCAAALGMDGVLLSPRCADPLYRRSVRVSMGAVFAIPYARFDTWPDELTGVSAAQFRLL 226

Query: 211 GLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            L+ D   P   +I+       ++IAL+LGAEG GL  +  + A     + M   + +LN
Sbjct: 227 ALTPD---PAATDIRTLRVAAGERIALMLGAEGPGLSKQALDRAELRVRIPMHAGVDSLN 283

Query: 265 VSNAAAVALYIT 276
           V+ AAA+A ++ 
Sbjct: 284 VAAAAAIACFVV 295


>gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 394

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 21/211 (9%)

Query: 92  PVKTVPPQT-----IDKIVGKEAV-------HQGLALETAPLLSPTL-DAVRNSQ----- 133
           P++T+  +      I K V KE +       HQG+    A     T+ D  + ++     
Sbjct: 185 PIRTIVREAKKTDAILKFVDKERLNQLTNEHHQGVVAIVAAYEYGTIEDLFKRAEEKGED 244

Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++LD + DPHN+GAI+R+A      G+I  K  +   +  +AK+++GA+ + P +++
Sbjct: 245 PFFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKV 304

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +N+   + ++   G        D +    Q +    I L++G EG G+    +E    ++
Sbjct: 305 TNIGKTMDELKERGMWFACADMDGEVIYRQNLTG-SIGLVIGNEGSGVSRLVKEKCDFIS 363

Query: 253 HLHMPGIIKALNVSNAAAV-ALYITQNHFAK 282
            + M G I +LN S AA V A  + +    K
Sbjct: 364 SIPMKGDIDSLNASVAAGVLAFEVVRQRLGK 394


>gi|167765723|ref|ZP_02437776.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
 gi|167712596|gb|EDS23175.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
 gi|291559859|emb|CBL38659.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
           SSC/2]
          Length = 246

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 2/150 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + DPHN+GAI+R+A      G+I  K  +   +  +AK+++GA+ + P ++++
Sbjct: 98  FFILLDGIEDPHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVT 157

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   + ++   G        D +    Q +    I L++G EG G+    +E    ++ 
Sbjct: 158 NIGKTMDELKERGMWFACADMDGEVIYRQNLTG-SIGLVIGNEGSGVSRLVKEKCDFISS 216

Query: 254 LHMPGIIKALNVSNAAAV-ALYITQNHFAK 282
           + M G I +LN S AA V A  + +    K
Sbjct: 217 IPMKGDIDSLNASVAAGVLAFEVVRQRLGK 246


>gi|150007357|ref|YP_001302100.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|301310641|ref|ZP_07216580.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
 gi|149935781|gb|ABR42478.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|300832215|gb|EFK62846.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
          Length = 248

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 110/238 (46%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDK 103
           EN  ++G+  V  A+    +++ ++L  ++    L    ++       PV+ VP + +D+
Sbjct: 3   ENEMVFGIRAVIEAIQ-ADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG+    + +   +L+ +            +++LD V D  N GAI R+   
Sbjct: 62  LTRKN--HQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   + S S +A   K+++GAL  +P  +  ++  A++ +   G +    S  +
Sbjct: 120 AGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +          +A+++GAE  G+ P+      +M  +   G I +LNVS A ++ +Y
Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVY 237


>gi|311267819|ref|XP_003131753.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Sus
           scrofa]
          Length = 361

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 22/193 (11%)

Query: 104 IVGKEAVHQGLALETAPLL-SPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVA 156
           ++ +  VHQG+ +E +PL   P  +A  +       QL +VL+ + DP N+GA+LRSA  
Sbjct: 116 VLCRYQVHQGVCMEVSPLRPQPWAEAGESRPGDDPQQLWLVLEGLQDPRNLGAVLRSAHF 175

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG----- 211
              + +IT+++ S   + V++K+++GA+E +      +L   LQ     G+   G     
Sbjct: 176 LGVEKVITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQAKARQGWLVAGTVGCP 235

Query: 212 ---LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIK 261
              +S  S+ P+   +    +    L+LG EG GL  + Q +     T +    +P  ++
Sbjct: 236 GPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGLSREVQASCQLLLTILPGRQLPPGLE 295

Query: 262 ALNVSNAAAVALY 274
           +LNVS AA + L+
Sbjct: 296 SLNVSVAAGILLH 308


>gi|184200893|ref|YP_001855100.1| RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581123|dbj|BAG29594.1| RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 275

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           PV     + +++I G   +H+G +A    P   P    + +++ + +L+ + D  N+GAI
Sbjct: 85  PVYVGADEVLEQITGFH-LHRGAMAAMHRPEPLPLESVLASARRVAILEDIVDHTNVGAI 143

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++ T R +        + + G +  +P++R+ + T  LQ++   GF T 
Sbjct: 144 FRSAAALDVDAVLVTPRCADPLYRRAVRVSMGTVFQVPWVRLEHWTADLQRVKDAGFLTA 203

Query: 211 GLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            L+ SD    ++       +K+ALILG EG+GL   T   A     + M   + +LNV+ 
Sbjct: 204 ALALSDDAVTVDALAAEAPEKLALILGTEGQGLGAATLHHADRHVIIPMSHGVDSLNVAA 263

Query: 268 AAAVALYITQ 277
           A+AVA + T+
Sbjct: 264 ASAVAFWETR 273


>gi|291538217|emb|CBL11328.1| rRNA methylases [Roseburia intestinalis XB6B4]
          Length = 296

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 7/193 (3%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H  PV     + + KI G +     L     P LS      +N++ + +L++V +P N+G
Sbjct: 96  HVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVVNPTNVG 155

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD----ALQKMHS 204
           AI RSA A   D ++ T+  +       ++ + G +  IP+            A+  +H 
Sbjct: 156 AIFRSAAALGMDAVLLTQACADPLYRRASRVSMGTVFQIPWTYFDKSASWPDGAMDVLHK 215

Query: 205 WGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            G++T  ++  D    ++ E  +  +K+A++LG EG GL   T         + M   + 
Sbjct: 216 LGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMTHGVD 275

Query: 262 ALNVSNAAAVALY 274
           +LNV+ A+AVA +
Sbjct: 276 SLNVAAASAVAFW 288


>gi|329766852|ref|ZP_08258380.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
 gi|328837577|gb|EGF87202.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
          Length = 251

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 6/147 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD V DP N+G I+R+A AF+ D II  K  +      + +S  G+  HI      +
Sbjct: 106 VLILDRVQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNVD 165

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMA 252
           L D L+ M  +      L +D  K +EQ + N    +A+I G EG G+  +  +   ++ 
Sbjct: 166 LVDLLEHMKDFSIFATSLKAD--KYIEQ-LDNIVGNVAVIFGNEGSGVSEEILDKVNNLL 222

Query: 253 HLHMPGIIKALNVSNAAAVAL-YITQN 278
            + MPG  ++LNVS AA + + YI+ N
Sbjct: 223 KISMPGKAESLNVSIAAGIVMHYISTN 249


>gi|226289866|gb|EEH45350.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb18]
          Length = 565

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 20/154 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD + DP N+GAI+RSA  F  D +I + R S   SAV  K+++GA E+IP +  +N 
Sbjct: 361 LFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKASAGAAENIPILTTTNP 420

Query: 196 TDALQKMHS--WGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237
           T  ++  H+  W F             QT+G  ++   S++ +  ++      L+LG+E 
Sbjct: 421 TLFVKSSHTNGWKFFAAEAPAAANASQQTLGTPTEQVLSRREVSTKLNEAPCVLMLGSEE 480

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +GL    ++ A     + +PG I A NV + A V
Sbjct: 481 QGLPRSIRQQADGA--VVIPGAITASNVEDRAGV 512


>gi|239626147|ref|ZP_04669178.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520377|gb|EEQ60243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 264

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 9/158 (5%)

Query: 122 LSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVL 176
           L   L A RN +L +MVL+ + DP N+G I+R+A      GI+    TT  Y+P     +
Sbjct: 100 LEDILKAPRNGKLAIMVLETIQDPGNLGTIVRAAEGAGITGIVMNRETTDIYNPK----V 155

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S  G++  +P++ + ++  A Q M   G +            +QE   D +  ++G E
Sbjct: 156 IRSTMGSICRMPFVCVDDIRQACQTMKDSGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNE 215

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL   T   A     + M G +++LN + AA+V ++
Sbjct: 216 AGGLTDGTAAMADCYVKIPMAGRVESLNAAVAASVLMF 253


>gi|284031597|ref|YP_003381528.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283810890|gb|ADB32729.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 268

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 9/193 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           PV  V  +  +++ G   VH+G AL +    AP    TL A      + + D + D  N+
Sbjct: 77  PVYLVSAELAEQVTGFH-VHRG-ALASYRRQAPADLDTLLAGVTHGRIAIFDDIVDHTNV 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA  R+A A   D ++ +   +        K + G +  +P+ R+++   AL ++   GF
Sbjct: 135 GAGFRAAAALGVDAVLVSPTCADPLYRRSVKVSMGTVFQVPWTRVASWPGALDQLREHGF 194

Query: 208 QT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            T    L+ DS    E   + D K+ALI G EG GL P           + M G + +LN
Sbjct: 195 VTAAFALTDDSISLDELAARRDAKLALIFGTEGHGLSPHVLRQTDLTVKIPMAGGVDSLN 254

Query: 265 VSNAAAVALYITQ 277
           V+++AAVA Y T+
Sbjct: 255 VASSAAVAFYATR 267


>gi|154245126|ref|YP_001416084.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
 gi|154159211|gb|ABS66427.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
          Length = 268

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 117/253 (46%), Gaps = 8/253 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           + RD ++     ++    ++ E +    V  +  A ++  R +  LL+   A    D  A
Sbjct: 15  DFRDVRERDLVGRQGAFMAEGEVVLRLLVSRLGGADSHCLRAL--LLSEAQAQRLGDVIA 72

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETA-PLLSPT--LDAVRNSQLLMVLDHV 141
            LP   PV     + +D++VG   +H+G LAL  A PL  P   L+ +    L++    +
Sbjct: 73  ALPQDVPVYVAGQKVMDQVVGFP-IHRGILALGVARPLPEPAALLERLGERALVVAALGL 131

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            +  N+G I R+A AF  D ++              + + GA   +P+ R+++   A++ 
Sbjct: 132 TNHDNMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFARVADGAAAVEL 191

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + + GF+ + LS   ++PL + ++  ++A + G EG GL P      T    + M     
Sbjct: 192 LKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGL-PDAVMAMTRTVAIPMAAGFD 250

Query: 262 ALNVSNAAAVALY 274
           +LNV+  + + L+
Sbjct: 251 SLNVATTSGIVLH 263


>gi|333030107|ref|ZP_08458168.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
           DSM 18011]
 gi|332740704|gb|EGJ71186.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
           DSM 18011]
          Length = 249

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            ++GV  V  A+    ++I ++L  K+  + L    + A      PV+ VP + ++++  
Sbjct: 7   IIFGVRAVIEAVE-AGKEIDKILVKKDIQSDLSKELFTALRGKMVPVQRVPVERLNRVTR 65

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +       L P L     +   ++LD V D  N GAI R+      
Sbjct: 66  KN--HQGVIAYVSAVTYQKVEDLVPFLYEQGKNPFFVMLDGVTDVRNFGAIARTCECGGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++   + S S +A   K+++GAL  +P  R  +L   ++ +   GF+ +  +      
Sbjct: 124 DAVVIPMKGSVSVNADAVKTSAGALHTLPVCREQSLNTTIKYLKDSGFRILAATEKGDYN 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             Q      I LI+G+E KG+  +          + + G I++LNVS AA V +Y
Sbjct: 184 YTQGDYTGPICLIMGSEDKGISAENLSLCDEWMTIPILGNIQSLNVSVAAGVLIY 238


>gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           owensensis OL]
 gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           owensensis OL]
          Length = 253

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 73/144 (50%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            +  L++LD + DP N G+I+RSA      GI+   R S   +  + K+++GA+E++   
Sbjct: 92  EAAFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIA 151

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R+ NL   ++++   G       + S KP+ +        +++G+EGKG+    +E A  
Sbjct: 152 RVVNLRRTIEELKEKGIWVFAADASSPKPVYECDFTIPACIVIGSEGKGISRLVKEGADF 211

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G I + N S AA +  +
Sbjct: 212 LIKIPQKGYINSFNASVAAGIIFF 235


>gi|225682465|gb|EEH20749.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb03]
          Length = 565

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 20/156 (12%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             + LD + DP N+GAI+RSA  F  D +I + R S   SAV  K+++GA E+IP +  +
Sbjct: 359 FALFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKASAGAAENIPILTTT 418

Query: 194 NLTDALQKMHS--WGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGA 235
           N T  ++  H+  W F             QT+G  ++   S++ +  ++      L+LG+
Sbjct: 419 NPTLFVKSSHTNGWKFFAAEAPAAANASQQTLGTPTEQVLSRREVSTKLNEAPCVLMLGS 478

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           E +GL    ++ A     + +PG I A NV + A V
Sbjct: 479 EEQGLPRSIRQQADGA--VVIPGAITASNVEDRAGV 512


>gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905]
 gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905]
          Length = 254

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 24/253 (9%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y K  +  +K R  S      + G H V  AL N   ++ Q++  +          +LP 
Sbjct: 14  YWKKLATTRKERERSG--EFIVEGFHLVEEALKN-KEQVLQIIVREGV--------DLPM 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVH----QGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +P+  +    +  +V KE       QG+ A+   P L   + A     LL  +D V DP
Sbjct: 63  LWPIDGIAIIEVTSVVAKEFAETETSQGVFAICKQPALEEEVKASWRKVLL--IDAVQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ++R+A A   D +I  K  +   +    ++A G+  HIP +R   LT+ +  + +
Sbjct: 121 GNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAAQGSHFHIPVVR-EELTECVDFLQA 179

Query: 205 WGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIK 261
            G    G + D       +I+     A+I+G EG G++P  Q  A +  ++ +P  G  +
Sbjct: 180 QGVPVFGTALDEDAVPYSDIQHTGAFAIIMGNEGSGIQP--QLLAMTDQNIIIPIFGQAE 237

Query: 262 ALNVSNAAAVALY 274
           +LNV+ A  + LY
Sbjct: 238 SLNVAVATGIVLY 250


>gi|37912927|gb|AAR05259.1| predicted 23S rRNA methylase [uncultured marine gamma
           proteobacterium EB000-45B06]
 gi|40063153|gb|AAR37990.1| RNA methyltransferase, TrmH family, group 3 [uncultured marine
           bacterium 562]
          Length = 240

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD++ DP N+GA +RSA     D +I  K +    +++  K + G  E I    ++
Sbjct: 92  LILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEVIKIFHVT 151

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL + L+ +        GLS  + K        +  A+I+GAE  G+R KT E      +
Sbjct: 152 NLVNCLKYLQGININIYGLSEHASKSHTDYNFTEASAIIMGAEESGVREKTLERCDHKIN 211

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           L    + K+ NVS A  + L
Sbjct: 212 LSSNKLFKSFNVSVATGIIL 231


>gi|14970548|emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi]
          Length = 366

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            L+ A  LS   D    +  ++ L+ V +PHN+G I+RS   F   G++     +  ES 
Sbjct: 204 GLDVAAYLSEAGD----TDCVLALEDVGNPHNLGGIMRSCAHFGVKGLLVND-AAQLESG 258

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              ++A G  EH+  I    L DAL +  + G+  +  SS     L +     K  ++LG
Sbjct: 259 AAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSHKGTTLSKVSLPAKTVIVLG 318

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
            EG GL     +       +   G +++LN+S A  + L  +  QNH
Sbjct: 319 QEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAEWWRQNH 365


>gi|307325496|ref|ZP_07604698.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306888965|gb|EFN19949.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 272

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 9/181 (4%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146
           P PV  V P+  +++ G   VH+G   +++  PL  P  ++V +N++ + +++ VND  N
Sbjct: 76  PAPVYAVSPELAERVTGYH-VHRGALASMQRKPL--PDAESVLQNARRVAIMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAI RSA A   D ++ +   +        K + GA+  +PY R+ +    L+ +   G
Sbjct: 133 TGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLESWPRGLEAVRDAG 192

Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+ + L+ D K     +    + +++AL+LGAEG GL  +    A     + M   + +L
Sbjct: 193 FKILALTPDEKATTIDDAAPHRLERVALMLGAEGDGLSTQALMAADEWVRIPMAHGVDSL 252

Query: 264 N 264
           N
Sbjct: 253 N 253


>gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 246

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 11/194 (5%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-------LALETAPLLSPTLDAVRNSQLLMVLDHV 141
           H   V+ VP + +D+   K   HQG       +  E    + P L        ++VLD +
Sbjct: 47  HDVAVQRVPNERLDRFTRKN--HQGVIAFLSAITYEKIEDIVPFLYENGKDPFILVLDGI 104

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N GAI R+      + I+   + S + +A   K+++GAL  IP  +  NLT A+Q 
Sbjct: 105 TDVRNFGAIARTCEVAGVNAIVIPAKGSVTVNADAVKTSAGALLKIPVCKEPNLTSAIQF 164

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + + G + +  +S+    +  EI     IA ++GAE  G+  +    A ++  +   G I
Sbjct: 165 LRNSGIKVVA-ASERGADIYTEIDYTGPIAFVMGAEDVGVANENLRIADNLVKIPQFGTI 223

Query: 261 KALNVSNAAAVALY 274
            +LNVS AA V +Y
Sbjct: 224 GSLNVSVAAGVLIY 237


>gi|163782847|ref|ZP_02177843.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881968|gb|EDP75476.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 239

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALE 185
           + ++ +   +V DH+ DP N+G +LR+       G +I  +R SP    V+ K++SGA+ 
Sbjct: 86  ETIKRNSFFLVTDHITDPQNVGNLLRTCEVLGGVGALIPRERSSPMNQTVV-KASSGAIF 144

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+   +++NL   L++    G     +    K   E EI     AL+LG+E KG+     
Sbjct: 145 HLEISKVANLGRVLKEFKEMGGWVFAVEKGGKDIRELEIVLP-CALVLGSEDKGVSKSLL 203

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E +  +  + M G   +LNV +A A+A++
Sbjct: 204 EVSDEVLSIPMKGKTTSLNVGSAGAIAMW 232


>gi|307132323|ref|YP_003884339.1| putative methyltransferase [Dickeya dadantii 3937]
 gi|306529852|gb|ADM99782.1| predicted methyltransferase [Dickeya dadantii 3937]
          Length = 362

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 7/167 (4%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            L+ A  LS   D    +  ++ L+ V +PHN+G I+RS   F   G++     +  ES 
Sbjct: 200 GLDVAAYLSEAGD----TDCVLALEDVGNPHNLGGIMRSCAHFGVKGLLVND-AAQLESG 254

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              ++A G  EH+  I    L DAL +  + G+  +  SS     L +     K  ++LG
Sbjct: 255 AAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSHKGTTLSKVSLPAKTVIVLG 314

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
            EG GL     +       +   G +++LN+S A  + L  +  QNH
Sbjct: 315 QEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAEWWRQNH 361


>gi|34112942|gb|AAQ62387.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
           EBAC31A08]
          Length = 240

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD++ DP N+GA +RSA     D +I  K +    +++  K + G  E I    ++
Sbjct: 92  LILILDNIIDPRNLGACIRSAAVIGVDAMIINKHHCAPINSIAHKVSVGGAEVIKIFHVT 151

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL + L+ +        GLS  + K        +  A+I+GAE  G+R KT E      +
Sbjct: 152 NLVNCLKYLQGININIYGLSEHASKSHTDYNFTEASAIIMGAEESGVREKTLERCDHKIN 211

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           L    + K+ NVS A  + L
Sbjct: 212 LSSNKLFKSFNVSVATGIIL 231


>gi|225619496|ref|YP_002720753.1| TrmH family RNA methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225214315|gb|ACN83049.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira
           hyodysenteriae WA1]
          Length = 236

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 6/188 (3%)

Query: 92  PVKTVPPQTIDKIVGK-----EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           P+K V    ++KIVGK       + + + +     +    +  R + L+ +LD + D HN
Sbjct: 44  PIKNVDKNEMEKIVGKIYSIAADIKENVEIGIDSFIEKAFEK-RENPLIFILDSITDVHN 102

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+R+A  F   GII  K  S   +  + + + GA  H+P    +NL   +  M   G
Sbjct: 103 LGAIIRNAYFFDVAGIIMPKDNSAPINEKVYEISEGAAYHLPISIETNLNRVIDLMKDKG 162

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F     S   +  LE    N   A+ILG E  G+R   ++ +     ++      +LNVS
Sbjct: 163 FWIYYASEKGETSLEDFKFNSPTAIILGNEHSGVRDILKKNSDGSIIINAVNDFDSLNVS 222

Query: 267 NAAAVALY 274
            A+A+  Y
Sbjct: 223 AASAIIGY 230


>gi|261749353|ref|YP_003257038.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497445|gb|ACX83895.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 249

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 22/240 (9%)

Query: 51  LYGVHTVSAALNNP---SRKIFQLLATKNA------LARLDWDANLPHPFPVKTVPPQTI 101
           +YG+H +  A+ +    S+  FQ+   K        L  L    N+P    +  VP    
Sbjct: 7   IYGIHPLIEAIQSKRSISKLFFQIGWKKKCNPYYKKLISLSKRENIP----IHIVPKNKF 62

Query: 102 DKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            ++  K   HQG+    +P+       L P       + LL++LD + D  N G+I+R+A
Sbjct: 63  HQLNNKN--HQGVFALLSPIETYSIEDLLPIFYEKGKNPLLLILDRITDVRNFGSIIRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                D II   +Y+    +   K++SGAL  +P  +  N+   ++ +   G + +  + 
Sbjct: 121 ACAGVDAIIIPNKYTAMICSDSIKTSSGALFKVPICQEKNIKKTIEYLMKSGLKIVSATE 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            S     +   +   A+ILG E  G+ PK  E     A +     I +LNVS A  + LY
Sbjct: 181 KSNIYWYKIDFSGPTAIILGNESNGICPKYLEITYEKAKIPAIHGISSLNVSVACGIILY 240


>gi|332670241|ref|YP_004453249.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332339279|gb|AEE45862.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 280

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 22/266 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTV-SAALNNPSRKIFQLLATK------NALARL 81
           DY  +     +SRH    + L++    TV   AL    R    LLA +        LA L
Sbjct: 19  DYVSLTDVALRSRHEPA-KGLYIAESSTVLGRALRAGHRPRSVLLAPRWVPDLERMLAEL 77

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMV--- 137
             D       PV       ++ I G   VH+G LA    P L P  D +  ++       
Sbjct: 78  PDDGAT---VPVYVADEPVLEAITGFH-VHRGALAAMHRPPLPPVADVLAAARGGAGARR 133

Query: 138 ---LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
              L+ V D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI  
Sbjct: 134 VAVLEDVVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDP 193

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSM 251
             D ++++ S GF T  L+ +D    L++ + +  +++AL+LGAEG GL+P T   +  +
Sbjct: 194 WPDGIEELRSHGFVTASLALADDALTLDELVADPPERLALVLGAEGHGLKPATVAASDLV 253

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M G + +LNV+ AAAVA + T+
Sbjct: 254 VRIPMAGGVDSLNVAAAAAVAFWATR 279


>gi|323335423|gb|EGA76709.1| Mrm1p [Saccharomyces cerevisiae Vin13]
 gi|323346586|gb|EGA80873.1| Mrm1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 412

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 94/341 (27%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58
           +  K +H  KL+    + K     NQKS H S+ +N               ++YG ++V 
Sbjct: 79  YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 133

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPF----PVKTVPPQTIDK----IVGKEAV 110
           AAL NPSR         N  +RL +   +P           V  + +DK    ++    V
Sbjct: 134 AALLNPSR---------NCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGV 184

Query: 111 HQGLALETAPL-----------------LS-----------------PTLDAVRNSQLLM 136
           H  +ALET PL                 LS                  T    +   L +
Sbjct: 185 HNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGL 244

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            LD + DPHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +    
Sbjct: 245 YLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPL 304

Query: 197 DAL---QKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242
           +     Q+M  W F T  L++ + +            L        + L++G E +G+R 
Sbjct: 305 EFFTKSQEMGGWTFITSHLANXTSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRT 364

Query: 243 KTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273
             +  +     +   G          I+ +LNVS A A+ +
Sbjct: 365 NLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|171743049|ref|ZP_02918856.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
           27678]
 gi|171278663|gb|EDT46324.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
           27678]
          Length = 288

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149
            PV    P+ + ++ G   +H+G          P+++ V R ++ + V++++ D  N+GA
Sbjct: 82  IPVYVASPEQLKRLTGYR-LHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHTNVGA 140

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQKMH 203
           ++RSA A   D ++ T           A+ + G +  IP+ RI            ++++H
Sbjct: 141 LMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGMRELH 200

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATSM 251
             GF T+ ++  D    L++ ++            D++ALI G EG GL   T   A   
Sbjct: 201 DLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISRADLT 260

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
             + M   + +LNV+ ++AVA Y T
Sbjct: 261 VKIPMSHSVDSLNVAASSAVAFYST 285


>gi|225011636|ref|ZP_03702074.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-2A]
 gi|225004139|gb|EEG42111.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-2A]
          Length = 244

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 11/189 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAV---RNSQLLMVLDHVNDPHNIG 148
           VP + +D+   K   HQG       L    + P +++V   + + + ++LD V D  N G
Sbjct: 54  VPVERLDRFSSKN--HQGAVARIGALSTQDMEPLIESVLKEKENPVFVLLDGVTDTRNFG 111

Query: 149 AILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           AILRSA A   D + I++   +P    V+  SA GA + +P  ++ +L D +  + +   
Sbjct: 112 AILRSAAATGVDAVFISSTGSAPLNGDVVKTSAGGAFK-VPISKVQHLKDVVYYLKAHDI 170

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T+G++  S + L        +AL+ GAE  G+     +     A L M   + +LNVS 
Sbjct: 171 PTLGITEKSTETLYDSDLKGPLALVFGAEDVGISNGLLKILDHKAKLPMTEAVDSLNVSV 230

Query: 268 AAAVALYIT 276
           A AV  Y T
Sbjct: 231 ACAVVFYET 239


>gi|301633558|gb|ADK87112.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma pneumoniae
           FH]
          Length = 239

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           L+T   L    D+   S L+M LD + D HN GAILR+ +A   DGII  K      ++ 
Sbjct: 76  LKTIEQLIQITDSKSTSTLVM-LDEIQDLHNFGAILRTCMAAEVDGIIFKKHNQAPINST 134

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLE-QEIKNDKIALIL 233
           + +++ G + +   ++++NL+ A+  +   GF T+  + D + KP + +++  DK  L++
Sbjct: 135 VIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERLKPKDYRQVDFDKRILLV 194

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G E KGL     + A     + M   + +LNVS A  + L+
Sbjct: 195 GNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 235


>gi|312601582|gb|ADQ90837.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 233

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 5/193 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           VK V    +DK+V     HQG    LE               +++++LDH+ D +N+G I
Sbjct: 40  VKIVSRDFLDKLVSLN--HQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNI 97

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A  F    II  K+ +   +    K +SG    + +I ++++  A+ K+    F   
Sbjct: 98  IRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIY 157

Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                 K    QEI+ N   A+ILG E  G++  +   +     + + G + +LNV+ A 
Sbjct: 158 ATDLKEKSRKIQEIQFNYPCAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVAT 217

Query: 270 AVALYITQNHFAK 282
            + L+  + +  K
Sbjct: 218 GIILFFLKQNIKK 230


>gi|332701318|ref|ZP_08421406.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551467|gb|EGJ48511.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 196

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 4/149 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A R   L +V+D+V+DPHN+ AILRS  AF    +     Y+ S   VL  KS++ A + 
Sbjct: 18  ARRQKGLTLVIDNVHDPHNVSAILRSCDAFGVPSVHLY--YTTSAFPVLGQKSSASARKW 75

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   R S+ T   + +    FQ +    S+  KPL     +   A+ILG E  G  P+  
Sbjct: 76  VMRTRHSDATSMYRGLKDQNFQVLATGFSERAKPLTAWDLSAPTAVILGNEHNGASPELA 135

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + A    ++ M G++++LNVS AAA+ LY
Sbjct: 136 QVADGEIYIPMMGMVQSLNVSVAAAIILY 164


>gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 270

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 10/251 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   GV  V   + +P   +  LL  +    R++  A+L 
Sbjct: 20  DFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPY-PVRALLGVRR---RIEALADLL 75

Query: 89  HPF--PVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            P   P     P  +  +VG       LA+ + AP L+     V  S+ L VL+ V D  
Sbjct: 76  APLDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAE-HLVATSRRLAVLEGVGDHE 134

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+ R+A A   DG++  +  S        + + G +  +P+ R+ +  D L  +   
Sbjct: 135 NLGALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDG 194

Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           GF+   L+  +D+    E  + +  +A++LG+EG GL  +    A     + M G + +L
Sbjct: 195 GFRVAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSL 254

Query: 264 NVSNAAAVALY 274
           NV+ A A+A +
Sbjct: 255 NVATAGAIAFH 265


>gi|208434474|ref|YP_002266140.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
 gi|208432403|gb|ACI27274.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
          Length = 218

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 8/189 (4%)

Query: 91  FPVKTVPPQTID------KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           F +K   P  I       + + K   HQG+  +    L+ +L  V+ +Q L+VL  + D 
Sbjct: 28  FALKKACPNIIKVDNKKAQSLAKGGNHQGVLAKVELPLAASLKEVKKAQKLLVLCGITDV 87

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG I RSA     DG+I       +   ++ +S+ G +  +P+  +SN  D + ++ +
Sbjct: 88  GNIGGIFRSAYCLGMDGVILDFAKELAYEGIV-RSSLGLMYDLPFSVMSNTLDLINELKT 146

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            GF  +G S      +E  +   K AL LG+E +GL  K      ++  + M     +LN
Sbjct: 147 SGFLCLGASMQGSSQVEN-LSLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLN 205

Query: 265 VSNAAAVAL 273
           VS AA + +
Sbjct: 206 VSVAAGILM 214


>gi|219125428|ref|XP_002182984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405778|gb|EEC45720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 212

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 30/215 (13%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVND 143
            P+ +V    ++ + G    HQG  L    L   +L+ + +         + +VLD V D
Sbjct: 1   IPIASVDKGVLNTLSGNRP-HQGYVLRCGKLFFESLNKIPHPDEDSAAPSMWLVLDEVVD 59

Query: 144 PHNIGAILRSAVAFSCD---GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           P N+GA+LRSA         GI+   + S   S  ++ +++GALE +     SNL   L 
Sbjct: 60  PQNLGALLRSAYFLGGSTKVGILVCAKNSAPPSPTVSAASAGALELVDLYSTSNLPRTLA 119

Query: 201 KMHSWGFQTIGLSSDSKKPLE------QEIK--NDKIALILGAEGKGLRPKTQETATSMA 252
              S GF+ +G S+   + L       QEI   +    L+LG+EG GLR    ++ T   
Sbjct: 120 AAESDGFRIVGASASVPRDLNVPLYELQEISEMSGPTILVLGSEGHGLRSLVAKSCTEF- 178

Query: 253 HLHMPGIIKA-----LNVSNAAAVALYITQNHFAK 282
            + +PG + A     LNVS    + L+    HF K
Sbjct: 179 -VKVPGAVDAGGVDSLNVSVTGGILLW----HFLK 208


>gi|326800453|ref|YP_004318272.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
           21]
 gi|326551217|gb|ADZ79602.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
           21]
          Length = 241

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 9/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           VP + +D+I  K   HQG+    +P+       + PT+       L+++LD + D  N G
Sbjct: 49  VPIEKLDRITRKN--HQGVIAVISPITYQKIEDVIPTIYEEGKVPLILILDGITDVRNFG 106

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A     D ++   + S   +    K+++GAL  I   R  +LT  ++ +   G Q
Sbjct: 107 AIARTAACAGVDALVVPNKGSAEINPDAIKTSAGALYKIAVCRHESLTQVIKFLQESGLQ 166

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +  +   + +       A+++GAE  G+       A  +A + M G I +LNVS +
Sbjct: 167 VVACTEKTGDTIYKPDFKSPTAIVMGAEDTGISDSIIRNADYLAKIPMFGDIASLNVSVS 226

Query: 269 AAVALY 274
           A V +Y
Sbjct: 227 AGVIIY 232


>gi|72080967|ref|YP_288025.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|71914091|gb|AAZ54002.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 233

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 5/193 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           VK V    +DK+V     HQG    LE               +++++LDH+ D +N+G I
Sbjct: 40  VKIVSRDFLDKLVSLN--HQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNI 97

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A  F    II  K+ +   +    K +SG    + +I ++++  A+ K+    F   
Sbjct: 98  IRTANCFGIKHIILPKKRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIY 157

Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                 K    QEI+ N   A+ILG E  G++  +   +     + + G + +LNV+ A 
Sbjct: 158 ATDLKEKSRKIQEIQFNYPCAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVAT 217

Query: 270 AVALYITQNHFAK 282
            + L+  + +  K
Sbjct: 218 GIILFFLKQNIKK 230


>gi|283455940|ref|YP_003360504.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|283102574|gb|ADB09680.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
          Length = 288

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149
            PV    P+ + ++ G   +H+G          P+++ V R ++ + V++++ D  N+GA
Sbjct: 82  IPVYVASPEQLKRLTGYR-LHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHTNVGA 140

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQKMH 203
           ++RSA A   D ++ T           A+ + G +  IP+ RI            ++++H
Sbjct: 141 LMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTGMRELH 200

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATSM 251
             GF T+ ++  D    L++ ++            D++ALI G EG GL   T   A   
Sbjct: 201 DLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISRADLT 260

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
             + M   + +LNV+ ++AVA Y T
Sbjct: 261 VKIPMSHGVDSLNVAASSAVAFYST 285


>gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 287

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 10/251 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   GV  V   + +P   +  LL  +    R++  A+L 
Sbjct: 37  DFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPY-PVRALLGVRR---RIEALADLL 92

Query: 89  HPF--PVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            P   P     P  +  +VG       LA+ + AP L+     V  S+ L VL+ V D  
Sbjct: 93  APLDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAE-HLVATSRRLAVLEGVGDHE 151

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+ R+A A   DG++  +  S        + + G +  +P+ R+ +  D L  +   
Sbjct: 152 NLGALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDG 211

Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           GF+   L+  +D+    E  + +  +A++LG+EG GL  +    A     + M G + +L
Sbjct: 212 GFRVAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSL 271

Query: 264 NVSNAAAVALY 274
           NV+ A A+A +
Sbjct: 272 NVATAGAIAFH 282


>gi|306822854|ref|ZP_07456230.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801341|ref|ZP_07695470.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553486|gb|EFM41397.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308222230|gb|EFO78513.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 288

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 20/205 (9%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149
            PV    P+ + ++ G   +H+G          P+++ V R ++ + V++++ D  N+GA
Sbjct: 82  IPVYVASPEQLKRLTGYR-LHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDHTNVGA 140

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DALQKMH 203
           ++RSA A   D ++ T           A+ + G +  IP+ RI            ++++H
Sbjct: 141 LMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGEDKHYWPFTGMRELH 200

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATSM 251
             GF T+ ++  D    L++ ++            D++ALI G EG GL   T   A   
Sbjct: 201 DLGFTTVAMALEDDSISLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTISRADLT 260

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
             + M   + +LNV+ ++AVA Y T
Sbjct: 261 VKIPMSHGVDSLNVAASSAVAFYST 285


>gi|323302933|gb|EGA56737.1| Mrm1p [Saccharomyces cerevisiae FostersB]
          Length = 412

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 138/342 (40%), Gaps = 96/342 (28%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58
           +  K +H  KL+    + K     NQKS H S+ +N               ++YG ++V 
Sbjct: 79  YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 133

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP-----QTIDK----IVGKEA 109
           AAL NPSR         N  +RL +   +P    ++TV       + +DK    ++    
Sbjct: 134 AALLNPSR---------NCHSRLLYHGTIPSKI-LQTVDELKVTTELVDKHRLNLLTNYG 183

Query: 110 VHQGLALETAPL-----------------LS-----------------PTLDAVRNSQLL 135
           VH  +ALET PL                 LS                  T    +   L 
Sbjct: 184 VHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLG 243

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD + DPHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +   
Sbjct: 244 LYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKP 303

Query: 196 TDAL---QKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLR 241
            +     Q+M  W F T  L++ + +            L        + L++G E +G+R
Sbjct: 304 LEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVR 363

Query: 242 PKTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273
              +  +     +   G          I+ +LNVS A A+ +
Sbjct: 364 TNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|320162456|ref|YP_004175681.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319996310|dbj|BAJ65081.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 250

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 112/241 (46%), Gaps = 23/241 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIV 105
           ++ G + V   L    R+ F+LL       +   +  L        PV  VP   +D + 
Sbjct: 4   WICGRNAVYETLRARRRQFFRLLIASGVEEKGRIEEILALCAARRVPVSRVPRPQLDSL- 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMV-LDHVNDPHNIGAILRSAVAFS 158
                HQG+ALE +      L  +      R   LL + LD + +P N+G +LRSA A  
Sbjct: 63  --SESHQGVALECSGYPYAGLHDILALARQRGEPLLALGLDLIQNPQNLGTLLRSAEAVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL----QKMHSWGFQTIGL-S 213
             G++     +   +  + +++SGA EH+  +  +NL  AL    ++  +W    +GL  
Sbjct: 121 AHGVVIPLARAAGITPAVVQASSGASEHL-LVAQANLAQALETFKEEADAW---VVGLEG 176

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           S   +P ++   +  + L++G EG+G+RP  +     +  L M G I++LN + A ++ L
Sbjct: 177 SPESEPYDRVRLDGALVLVVGNEGEGMRPLVRRHCDVLVSLPMRGKIESLNAAVAGSIML 236

Query: 274 Y 274
           Y
Sbjct: 237 Y 237


>gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 249

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 15/234 (6%)

Query: 48  NLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +FL  G H    AL     K  +L+ ++NA   + WD       PV  V  + I  +  
Sbjct: 28  GMFLAEGYHLAEEALK--GEKAIELIISENAELPVRWDYG---ELPVTMVTDEIIKSLSD 82

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            E   QG+        +P   +V+ S  L++ D V DP N+G ++R+A A   D +I  K
Sbjct: 83  TE-TPQGVIAVCKEEKTPA--SVKGSTFLLI-DAVQDPGNLGTMIRTADAAGIDAVIVGK 138

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   +  + +SA G+  H+P IR  +L + + ++        G + ++  P ++    
Sbjct: 139 GSADIYNPKVLRSAQGSHFHLPIIR-GSLNEWMDRLEEEEIPVYGTALENGSPYKETHPA 197

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALYITQN 278
            + AL++G EG G+ P+    A +  +L++P  G  ++LNV+ AA + LY  +N
Sbjct: 198 GRFALLVGNEGSGVSPEL--LARTDKNLYIPIYGKSESLNVAVAAGILLYYLKN 249


>gi|331703851|ref|YP_004400538.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802406|emb|CBW54561.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 244

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 116/252 (46%), Gaps = 33/252 (13%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVK-------TVPPQT 100
            +YG H V           F+LL     + +  W  D  + + F +K        V    
Sbjct: 5   LIYGKHVV-----------FELLKKHQNMVKEIWVKDLKILNEFDLKNTKIKVNVVSENK 53

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSA 154
           +D+++  +  HQG+  +       + + + N        L+++LD ++DP+N GAI+RS 
Sbjct: 54  LDQLLETQTQHQGIIAQIKDYNYTSFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSC 113

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGL 212
              + DGII   +     ++ + K++SG+  +I   + +NL +A++ + + GF      L
Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFNIKISKTNNLNNAIKILKNNGFWIYATNL 173

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAA 270
           + +S    + +  N K A+I+G E KG+      T  S  ++++P    I + N S A +
Sbjct: 174 NQNSIDMTKTQFAN-KTAVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVACS 230

Query: 271 VALYITQNHFAK 282
           +  +   N+  K
Sbjct: 231 IICFWIANYLNK 242


>gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039827|gb|EEG50073.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
           10507]
          Length = 260

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LLMVL+ + DP N+G I+R+A     DGI+ +K      +  + +S  G++  +P++ I 
Sbjct: 110 LLMVLEDLQDPGNVGTIIRTAEGAGADGILLSKNTVDIFNPKVIRSTMGSIYRMPFVYIE 169

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ +AL+ +      T       K   + E      A  +G EG GL  +  E A     
Sbjct: 170 NMEEALRLLKKKKVSTYAAHLQGKNTYDGESYLRGTAFFVGNEGNGLSRQLSEKADCWIR 229

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + AA + +Y
Sbjct: 230 IPMEGQVESLNAAMAAGILMY 250


>gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 253

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 72/141 (51%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DP N G+I+RSA      GI+   R S   +  + K+++GA+E++   R+ 
Sbjct: 95  FLVLLDGITDPQNFGSIIRSAHLCGVHGIVIETRNSCPVTPAVEKASAGAVEYMKIARVV 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G       ++  KP+ +        +++G+EGKG+    +E A  +  
Sbjct: 155 NLRRTIEELKEKGIWVFAADANGSKPVYECDFTIPTCVVIGSEGKGITRLVKEGADFLIK 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G + + N S AA +  +
Sbjct: 215 IPQKGYVNSFNASVAAGIIFF 235


>gi|255014012|ref|ZP_05286138.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|256839648|ref|ZP_05545157.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|298375345|ref|ZP_06985302.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_19]
 gi|256738578|gb|EEU51903.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|298267845|gb|EFI09501.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_19]
          Length = 248

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 110/238 (46%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDK 103
           EN  ++G+  V  A+    +++ ++L  ++    L    ++       PV+ VP + +D+
Sbjct: 3   ENEMVFGIRAVIEAIQ-ADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG+    + +   +L+ +            +++LD V D  N GAI R+   
Sbjct: 62  LTRKN--HQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   + S S +A   K+++GAL  +P  +  ++  A++ +   G +    S  +
Sbjct: 120 AGVDTIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +          +A+++GAE  G+ P+      +M  +   G I +LNVS A ++ +Y
Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVY 237


>gi|151945292|gb|EDN63535.1| mitochondrial rRNA methyltransferase [Saccharomyces cerevisiae
           YJM789]
 gi|207341047|gb|EDZ69213.1| YOR201Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269588|gb|EEU04870.1| Mrm1p [Saccharomyces cerevisiae JAY291]
 gi|323331535|gb|EGA72950.1| Mrm1p [Saccharomyces cerevisiae AWRI796]
 gi|323352137|gb|EGA84674.1| Mrm1p [Saccharomyces cerevisiae VL3]
          Length = 412

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 94/341 (27%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58
           +  K +H  KL+    + K     NQKS H S+ +N               ++YG ++V 
Sbjct: 79  YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 133

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPF----PVKTVPPQTIDK----IVGKEAV 110
           AAL NPSR         N  +RL +   +P           V  + +DK    ++    V
Sbjct: 134 AALLNPSR---------NCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGV 184

Query: 111 HQGLALETAPL-----------------LS-----------------PTLDAVRNSQLLM 136
           H  +ALET PL                 LS                  T    +   L +
Sbjct: 185 HNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGL 244

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            LD + DPHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +    
Sbjct: 245 YLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPL 304

Query: 197 DAL---QKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242
           +     Q+M  W F T  L++ + +            L        + L++G E +G+R 
Sbjct: 305 EFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRT 364

Query: 243 KTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273
             +  +     +   G          I+ +LNVS A A+ +
Sbjct: 365 NLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|223038607|ref|ZP_03608900.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
           RM3267]
 gi|222880009|gb|EEF15097.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
           RM3267]
          Length = 226

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG   E       +LD ++    + +L  ++D  NIGAI+R+A A  C G++   +   
Sbjct: 61  HQGFLAEVEEFEFKSLDEIKKQNFIAILYGLSDVGNIGAIVRTAHALGCGGVVIVAKNLA 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KI 229
            E  +  +++SGA        + +    L ++   GF+    +S  K     E+K D K+
Sbjct: 121 MEGVL--RASSGAAYETDIALVEDGLSLLNELKQVGFKIYATASGGKNA--HEVKFDRKV 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           AL++G+EG+GL  K    +  +  + M     +LNVS A A+
Sbjct: 177 ALVMGSEGEGLHKKVLTKSDEIVGIKMKNDWDSLNVSAAFAI 218


>gi|253580061|ref|ZP_04857328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848580|gb|EES76543.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 272

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 9/191 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150
           PV T   + + K+ G  A+ +G+         P+++ + RN+  + VL++V +P NIGAI
Sbjct: 78  PVYTAEYELLVKLTGF-ALTRGMLCAMRRNSLPSVEEICRNASRIAVLENVVNPTNIGAI 136

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT----DALQKMHSWG 206
            RSA A   D ++ T   S       A+ + G +  IP+      T    D +Q + + G
Sbjct: 137 FRSAAALHMDAVLLTGGCSDPLYRRAARVSMGTVFQIPWTYFDKKTVWPQDGMQILQNLG 196

Query: 207 FQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+T  + L  DS    ++ +++ +K+A+ILG EG GL  +T         + M   + +L
Sbjct: 197 FKTAAMALRDDSVGIDDKALRSEEKLAVILGTEGDGLASQTIADCDYTVKIPMSHGVDSL 256

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 257 NVAAASAVAFW 267


>gi|254779454|ref|YP_003057559.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
 gi|254001365|emb|CAX29350.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
          Length = 227

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 8/225 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   ++  LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   IYGKQVITHLLNSHKEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I     
Sbjct: 61  GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAK 120

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E  +   K
Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLKK 178

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 179 CALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|222152573|ref|YP_002561748.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113384|emb|CAR41028.1| SpoU rRNA Methylase family protein [Streptococcus uberis 0140J]
          Length = 245

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 11/187 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           P+  V P+ + ++  +    QG+  E A   SP   + +   LL  L+ V DP N+G ++
Sbjct: 63  PIYIVTPEVLKELT-ESPSPQGIVAEIAMPDSPLPLSQKGKYLL--LEDVQDPGNLGTMI 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A   DG+I +++     +    +S  G+  H+P  R +++    Q + S G   + 
Sbjct: 120 RTADAACFDGVILSEKTVDLYNQKTLRSMQGSHFHLPVWR-TDVYSFCQTIQSNGVPVLA 178

Query: 212 --LSSDS--KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             LS DS   K L Q   ND   L++G EG+G+  +    A  + H++MPG  ++LNV+ 
Sbjct: 179 TTLSKDSIDYKALPQ---NDSFVLVMGNEGRGISDEMAALANQLVHINMPGQAESLNVAV 235

Query: 268 AAAVALY 274
           AA + ++
Sbjct: 236 AAGILIF 242


>gi|306834157|ref|ZP_07467277.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304423730|gb|EFM26876.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 247

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 103/203 (50%), Gaps = 11/203 (5%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           N     D+   + H   V  V P+ + ++   +   QG+  E A + S  L+ ++  + L
Sbjct: 49  NIFVLEDYADRVSHFSMVTYVTPEILKELTDSKT-PQGIIAELA-MPSLPLENLKVGRYL 106

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            VL+ V DP N+G ++R+A A   DG++ +++ +   +    +S  G+  H+P  R +N+
Sbjct: 107 -VLEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQGSHFHLPIWR-TNV 164

Query: 196 TDALQKMHSWGF----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +A QK+ +        T+   S S K +E    N   AL++G EG G+     + A  +
Sbjct: 165 YEACQKLQNLDVPLIATTLSKESVSYKTVEH---NGNFALVMGNEGNGISDSMTKQADIL 221

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           AH+ MPG  ++LNV+ A  + L+
Sbjct: 222 AHIIMPGQAESLNVAVATGIVLF 244


>gi|119025735|ref|YP_909580.1| tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
 gi|154487443|ref|ZP_02028850.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
           L2-32]
 gi|118765319|dbj|BAF39498.1| possible tRNA/rRNA methyltransferase [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154083961|gb|EDN83006.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
           L2-32]
          Length = 292

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 20/206 (9%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149
            PV    P+ + ++ G   +H+G          P+++ V R ++ + V++++ D  N+GA
Sbjct: 82  IPVYVASPEQLKRLTGYR-LHRGALAAMKRWSLPSVEEVCRGARRVAVMENIVDHTNVGA 140

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKMH 203
           ++RSA A   D ++ T           A+ + G +  +P+ RI            ++++H
Sbjct: 141 LMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIGGDDKHYWPFTGMRELH 200

Query: 204 SWGFQTIGLS----SDSKKPLEQEIKN--------DKIALILGAEGKGLRPKTQETATSM 251
             GF T+ ++    S S   L + + N        DK+ALI G EG GL   T   A   
Sbjct: 201 DLGFTTVAMALEDDSISLAELVRRLNNAETESDHIDKLALIFGTEGDGLSHHTISRADLT 260

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M   + +LNV+ ++AVA Y T+
Sbjct: 261 VKIPMSHGVDSLNVAASSAVAFYATR 286


>gi|288926613|ref|ZP_06420528.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
 gi|288336582|gb|EFC74953.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
          Length = 273

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T P   +  + G       L     PLL    +  R ++ ++V+  V D  NIGAI
Sbjct: 78  LPVYTGPRPVLAALTGYTLTRGVLCAMRRPLLPDVKEVCRGARRVVVIHGVVDTTNIGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++ T+      +    + + G++  +P+   + L D++  +   GF+T 
Sbjct: 138 FRSAAALGIDAVLLTRDSCDPLNRRAVRVSMGSVFLVPW---TWLDDSIASLSRLGFRTA 194

Query: 211 GLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++ +D   PL+        ++A+++G EG GL  +T E A  +  + M   + +LNV+ 
Sbjct: 195 AMALTDRSVPLDDPALATEPRLAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAA 254

Query: 268 AAAVALY 274
           A+AVA +
Sbjct: 255 ASAVAFW 261


>gi|167766952|ref|ZP_02439005.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
 gi|167710927|gb|EDS21506.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
          Length = 273

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 102/193 (52%), Gaps = 12/193 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNI 147
            PV T     + ++ G   + +G+  A+   PL  P L+ + + ++ +++L++V +P N+
Sbjct: 78  IPVYTASFDVLKQLTGF-GLTRGMLCAMRRKPL--PALETICDHAKRIVILENVMNPTNV 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHS 204
           GAI RSA A + D I+ +K  S        + + G +  IP+  + + T   D + ++  
Sbjct: 135 GAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMHRLKE 194

Query: 205 WGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            G++ + ++ +D    ++ E  +  DK+A+ILG EG GL  +T +       + M   + 
Sbjct: 195 LGYKNVAMALTDRSVSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVD 254

Query: 262 ALNVSNAAAVALY 274
           +LNV+ A+AVA +
Sbjct: 255 SLNVAAASAVAFW 267


>gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 253

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 72/141 (51%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DP N G+I+RSA      GI+   R S   +  + K+++GA+E++   R+ 
Sbjct: 95  FLVLLDGITDPQNFGSIIRSAHLCGVHGIVIETRNSCPVTPAVEKASAGAVEYMKIARVV 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G       ++  KP+ +        +++G+EGKG+    +E A  +  
Sbjct: 155 NLRRTIEELKEKGIWVFAADANGSKPVYECDFTIPTCVVIGSEGKGISRLVKEGADFLIK 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G + + N S AA +  +
Sbjct: 215 IPQKGYVNSFNASVAAGIIFF 235


>gi|255321809|ref|ZP_05362959.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
           RM3277]
 gi|255300913|gb|EET80180.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
           RM3277]
          Length = 226

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 5/162 (3%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG   E       ++D ++    + VL  ++D  NIGAI+R+A A  C GI+   +   
Sbjct: 61  HQGFLAEVEEFEFKSIDEIKKQNFIAVLYGLSDVGNIGAIVRTAHALGCGGIVVVAKNLA 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KI 229
            E  +  +++SGA        + +    L ++   GF+    +S  K     E+K D K+
Sbjct: 121 MEGVL--RASSGAAYEANIALVEDGLSLLNELKQVGFKIYATASGGKNA--HEVKFDQKV 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           AL++G+EG+GL  K    +  +  + M     +LNVS A A+
Sbjct: 177 ALVMGSEGEGLHKKVLAKSDEIVGIKMKNDWDSLNVSAAFAI 218


>gi|190407514|gb|EDV10781.1| ribose methyltransferase for mitochondrial 21S rRNA [Saccharomyces
           cerevisiae RM11-1a]
          Length = 385

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 135/341 (39%), Gaps = 94/341 (27%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--------------FLYGVHTVS 58
           +  K +H  KL+    + K     NQKS H S+ +N               ++YG ++V 
Sbjct: 52  YGKKKAHVEKLK----EIKNQAKLNQKS-HKSKFQNKDIALKLMNDNPIFEYVYGTNSVY 106

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPF----PVKTVPPQTIDK----IVGKEAV 110
           AAL NPSR         N  +RL +   +P           V  + +DK    ++    V
Sbjct: 107 AALLNPSR---------NCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNYGV 157

Query: 111 HQGLALETAPL-----------------LS-----------------PTLDAVRNSQLLM 136
           H  +ALET PL                 LS                  T    +   L +
Sbjct: 158 HNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGL 217

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            LD + DPHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +    
Sbjct: 218 YLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPL 277

Query: 197 DAL---QKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRP 242
           +     Q+M  W F T  L++ + +            L        + L++G E +G+R 
Sbjct: 278 EFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRT 337

Query: 243 KTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273
             +  +     +   G          I+ +LNVS A A+ +
Sbjct: 338 NLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 378


>gi|298531014|ref|ZP_07018415.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509037|gb|EFI32942.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 240

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 70/140 (50%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +L++LD V DP N+G + R+  A    GII  +  S        K+++GAL  I   +++
Sbjct: 94  VLLLLDQVQDPGNLGTLARTLAALGGAGIIIPRDRSAPLGPGAMKASAGALNRIGVAQVT 153

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   L  +   GF     + D  + + ++       L+LG E KG+RP   +      H
Sbjct: 154 NLARTLDHIDQAGFNIYAATMDQGQSVLEQTFVFPAVLVLGGEEKGIRPNVLKRCPGKIH 213

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G + +LNV++A A+ L
Sbjct: 214 IPMAGGMDSLNVAHAGALIL 233


>gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
           255-15]
 gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
           255-15]
          Length = 251

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 18/254 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+    +K R   Q +   + G H V  A+   +  I +L+  ++      W  N 
Sbjct: 13  KQWKKL--LTKKGR--LQTKRFLIEGEHLVEEAVR--AGIIKELIVREDVQVPGSWKKNA 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                +     +++ K++ +    QG+      +   T    R   LL  LD + DP N+
Sbjct: 67  ADLITID----ESVAKVLSETETTQGI-FAVCEMKQQTERLERGRYLL--LDRLQDPGNV 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   DG+I         ++ + ++  G++ H+P I +S L +A+Q +H  G 
Sbjct: 120 GTMIRTADAAGFDGVIIGHGTVDVYNSKVLRATQGSIFHLPVIMMS-LEEAIQDLHELGV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +G +    +P         I LI+G E +G+ P+  +     A++ + G  ++LN + 
Sbjct: 179 FILGTALRGAQPYTDVENLGAIGLIIGNEAQGVAPELLDQCDGRAYIPIRGKAESLNAAV 238

Query: 268 AAAVALYITQNHFA 281
           AA + LY    HFA
Sbjct: 239 AAGILLY----HFA 248


>gi|317499573|ref|ZP_07957836.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893122|gb|EFV15341.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 273

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 102/193 (52%), Gaps = 12/193 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNI 147
            PV T     + ++ G   + +G+  A+   PL  P L+ + + ++ +++L++V +P N+
Sbjct: 78  IPVYTASFDVLKQLTGF-GLTRGMLCAMRRKPL--PALETICDHAKRIVILENVMNPTNV 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHS 204
           GAI RSA A + D I+ +K  S        + + G +  IP+  + + T   D + ++  
Sbjct: 135 GAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMYRLKE 194

Query: 205 WGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            G++ + ++ +D    ++ E  +  DK+A+ILG EG GL  +T +       + M   + 
Sbjct: 195 LGYKNVAMALTDRSVSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVD 254

Query: 262 ALNVSNAAAVALY 274
           +LNV+ A+AVA +
Sbjct: 255 SLNVAAASAVAFW 267


>gi|315607159|ref|ZP_07882163.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315251213|gb|EFU31198.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 273

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T P   +  + G       L     PLL    +  R ++ ++V+  V D  NIGAI
Sbjct: 78  LPVYTGPRPVLAALTGYTLTRGVLCAMRRPLLPDVKEVCRGARRVVVIHGVVDTTNIGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++ T+      +    + + G++  +P+   + L D++  +   GF+T 
Sbjct: 138 FRSAAALGIDAVLLTRDSCDPLNRRAVRVSMGSVFLVPW---TWLDDSIASLSRLGFRTA 194

Query: 211 GLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++ +D   PL+        ++A+++G EG GL  +T E A  +  + M   + +LNV+ 
Sbjct: 195 AMALTDRSVPLDDPALAAEPRLAIVMGTEGDGLPRETIEQADYVVRIPMAHGVDSLNVAA 254

Query: 268 AAAVALY 274
           A+AVA +
Sbjct: 255 ASAVAFW 261


>gi|302518015|ref|ZP_07270357.1| rRNA methylase [Streptomyces sp. SPB78]
 gi|302426910|gb|EFK98725.1| rRNA methylase [Streptomyces sp. SPB78]
          Length = 273

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 11/257 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           DY  +     + R   + E LF+  G   V  AL++    +  +L T+  L  +  D   
Sbjct: 17  DYTSLTDVQLRRRREPE-EGLFIAEGEKVVRRALDS-GHGMRSMLLTEKWLPAMA-DVIE 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
               PV  V P+T +++ G   VH+G   +L   PL +P  D +  ++ + V + + D  
Sbjct: 74  ASEAPVYLVSPETAERVTGYH-VHRGALASLHRTPLPAPA-DVLAGARRVAVFEDLVDHA 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA  R+A A   D  + T R +        K + GA+  +PY R+ +       +   
Sbjct: 132 NLGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQA 191

Query: 206 GFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF       SD    L+  +  ++ ++AL+ G+EG GL P     A     + M   I +
Sbjct: 192 GFTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDS 251

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A AV  Y T+ +
Sbjct: 252 LNVAAATAVVFYATRKN 268


>gi|254416700|ref|ZP_05030450.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176440|gb|EDX71454.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 269

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 113/256 (44%), Gaps = 23/256 (8%)

Query: 39  KSRHTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKT 95
           K+  T  P + F+  YG   V  AL+NP   I +LL   NA    +D          VK 
Sbjct: 2   KTNQTKHPRDKFITVYGRKPVLEALSNPDIIIDKLLIANNARGEFIDEIIKQARQRGVKV 61

Query: 96  V--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---------------SQLLMVL 138
               P+ I +I       QG+ ++  P   P ++A+                 +   + L
Sbjct: 62  SRESPKYITRISRNGRHDQGVVVDVIP---PAMEALSTYLERQQSHPPNQKPQTHKFLAL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V +P N+G I+R+ +A   DGII  ++  P  + ++ K+++G   +   +R + L+DA
Sbjct: 119 DGVKNPSNVGMIIRTCLAAGFDGIILPRKGCPDLNPLVIKASAGTAFYTRVLRCAELSDA 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           LQ++    +   GLS  +   L     +     +LG E +G+         +   + +  
Sbjct: 179 LQQLRQANYTIYGLSGTATSTLYNLSFSPFSVFVLGNETEGINRDHHNLIDTWVSIPIEF 238

Query: 259 IIKALNVSNAAAVALY 274
             ++LNV++AAAV  +
Sbjct: 239 PAESLNVASAAAVVCF 254


>gi|323704472|ref|ZP_08116050.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535934|gb|EGB25707.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 256

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 8/152 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASG 182
           D V+     ++LD V DP N+G I+RSA AF+ DG+     T   Y+P     + +S  G
Sbjct: 100 DIVKEGGFYVILDEVQDPGNVGTIIRSADAFNVDGVFAINNTVDIYNPK----VLRSTMG 155

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P +     +     +   G + +  S  ++K +     +   ALI G E +G+  
Sbjct: 156 SIFHLPVVNDVEPSRLFHVLKKHGIRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNR 215

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              E   S   + M G+ ++LNVS AA++ LY
Sbjct: 216 LLDEFIDSSFKIPMDGMAESLNVSVAASICLY 247


>gi|325103518|ref|YP_004273172.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
           12145]
 gi|324972366|gb|ADY51350.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
           12145]
          Length = 255

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 14/252 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPF 91
           MQ  N K R   +  N  ++G+  V  A+    + I  L   +     +  +   L   F
Sbjct: 1   MQDRNFK-RQEPRESNQMIFGIRAVIEAIK-AGKDIESLFIQRGLTGGIYTELKTLLREF 58

Query: 92  --PVKTVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVN 142
             P + VP + +++I  K   HQG+    +P+       + P +     + L+++LD++ 
Sbjct: 59  DIPSQQVPVEKLNRITAKN--HQGVIAFISPITYQKIEDIIPQVYEKGETPLILILDNIT 116

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N GAI R+A       I+  KR +   +    K+++GAL  +P  R  +L   L+ +
Sbjct: 117 DVRNFGAIARTAECSGVHAIVIPKRGAAQINPDAVKTSAGALYKVPVCRHDSLLQILRFL 176

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +  +  +   + +       A+I+GAE  G+  +    +  +  + M G I++
Sbjct: 177 KDSGLQIVSCTEKTDDLIYKPDYTVPTAVIMGAEDTGISFELIRNSDYLTKIPMAGEIES 236

Query: 263 LNVSNAAAVALY 274
           LNVS +A + LY
Sbjct: 237 LNVSVSAGIILY 248


>gi|318060548|ref|ZP_07979271.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080422|ref|ZP_07987754.1| rRNA methylase [Streptomyces sp. SA3_actF]
 gi|333028301|ref|ZP_08456365.1| putative rRNA methylase [Streptomyces sp. Tu6071]
 gi|332748153|gb|EGJ78594.1| putative rRNA methylase [Streptomyces sp. Tu6071]
          Length = 273

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 11/257 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           DY  +     + R   + E LF+  G   V  AL++    +  +L T+  L  +  D   
Sbjct: 17  DYTSLTDVQLRRRREPE-EGLFIAEGEKVVRRALDS-GHGMRSMLLTEKWLPAMA-DVIE 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
               PV  V P+T +++ G   VH+G   +L   PL +P  D +  ++ + V + + D  
Sbjct: 74  ASEAPVYLVSPETAERVTGYH-VHRGALASLHRTPLPAPA-DVLAGARRVAVFEDLVDHA 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA  R+A A   D  + T R +        K + GA+  +PY R+ +       +   
Sbjct: 132 NLGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQA 191

Query: 206 GFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF       SD    L+  +  ++ ++AL+ G+EG GL P     A     + M   I +
Sbjct: 192 GFTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDS 251

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A AV  Y T+ +
Sbjct: 252 LNVAAATAVVFYATRKN 268


>gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
           Nor1]
 gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
           Nor1]
          Length = 270

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)

Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           T D +++S  +L++VLD+V DP N+G ++R+A A  C G+I TK  +   S    ++  G
Sbjct: 108 TFDDLQSSDRELIVVLDNVQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMG 167

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +L H+P I      +    +   G + +  + DS            +A++ G EG G+  
Sbjct: 168 SLFHLPVITGVAEQEVAAFLERQGIRLLATALDSSSLYHDVDLRSPVAIVFGNEGAGVSK 227

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              E A    ++ + G  ++LNV+ AAAV LY
Sbjct: 228 VILEKADERLYIPLYGRAESLNVAVAAAVILY 259


>gi|154482486|ref|ZP_02024934.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
           27560]
 gi|149736687|gb|EDM52573.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
           27560]
          Length = 270

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 95/188 (50%), Gaps = 4/188 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P+ T P   +  I G +     L     P L    +  ++ + + VL+++ +P N+GAI
Sbjct: 79  IPIFTAPFDVLTGITGFKLTRGMLCAMHRPKLKTVEEICKDKRRVAVLENIMNPTNVGAI 138

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-ALQKMHSWGFQT 209
            RSA A + D ++ T   S        + + G +  IP+  I       ++ +H+ GF+T
Sbjct: 139 FRSAAALNIDAVLLTHGCSNPLYRRAIRVSMGTVFQIPWTFIDEKEGTGIELLHNMGFKT 198

Query: 210 --IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             + L+ +S    ++ +K+ +K+A+ILG EG+GL   T  ++     + M   + +LNV+
Sbjct: 199 AAMALTDNSVSIDDKNVKSEEKLAIILGTEGEGLHQNTINSSDYTIKIPMSHGVDSLNVA 258

Query: 267 NAAAVALY 274
            A+AVA +
Sbjct: 259 AASAVAFW 266


>gi|148270170|ref|YP_001244630.1| RNA methyltransferase [Thermotoga petrophila RKU-1]
 gi|170288875|ref|YP_001739113.1| RNA methyltransferase [Thermotoga sp. RQ2]
 gi|281412488|ref|YP_003346567.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
           naphthophila RKU-10]
 gi|147735714|gb|ABQ47054.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga petrophila
           RKU-1]
 gi|170176378|gb|ACB09430.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga sp. RQ2]
 gi|281373591|gb|ADA67153.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
           naphthophila RKU-10]
          Length = 242

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           HQG+  +       +++ +  ++   L+++LD + DPHN+GAI+R++V    +GII  K 
Sbjct: 65  HQGVVFDIEEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGIIIPKD 124

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K + G +       ++NL   ++++   G  T     D   P+ +E    
Sbjct: 125 KSVKVTETVVKVSVGTVFRARIAVVTNLARTIEELKEKGVWTYASDIDG-TPIYEEDFTF 183

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A + G EG+G+R   +E    +  + M   I +LNVS +  V L+
Sbjct: 184 PTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLF 230


>gi|139436965|ref|ZP_01771125.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
           25986]
 gi|133776612|gb|EBA40432.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
           25986]
          Length = 304

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAVRNSQ-----LLMVLDHV 141
           P PV     + ++++ G       LA    P   P    LD V  +       + VL+ +
Sbjct: 86  PVPVFVASMELMEQLTGFNVTRGALAAFRRPRQIPVDEFLDGVVEAAGERPVRVCVLEGI 145

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT----- 196
            D  N+GAI RSA A + DGI+ +           A+ + G +  +P+ RI +       
Sbjct: 146 VDHTNVGAIFRSAAALNVDGILVSPTCCDPLYRRSARVSMGTVFQVPWTRIGSEARVWPH 205

Query: 197 DALQKMHSWGFQT--IGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           D L  +H  GF    + L+ DS     P+ QEI  D++A+ +G EG GL  KT       
Sbjct: 206 DGLAVLHEAGFSCAAMALTDDSVSLDDPVLQEI--DRLAIFMGTEGAGLGAKTIAGCDRA 263

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M   + +LNV+ A+AVA +
Sbjct: 264 VRIPMAHGVDSLNVAAASAVAFW 286


>gi|224076677|ref|XP_002196774.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Taeniopygia guttata]
          Length = 198

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 26/186 (13%)

Query: 113 GLALETAPL-LSPTLDAVR---------NSQLL-MVLDHVNDPHNIGAILRSAVAFSCDG 161
           G+ LE APL L    DA           N QLL +VL+H+ DP N+GA+LRSA     D 
Sbjct: 4   GVCLEAAPLPLRSLRDAEEPQLGHGERGNRQLLWLVLEHIQDPMNLGALLRSAYFLGVDR 63

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ T+  S   + V++K+++GA+E        +L   L+   + G++ +G  S  +   +
Sbjct: 64  VVATRGNSCPLTPVVSKASAGAMEVFDVYGTDDLQGFLKAKSAEGWEVVGTVSRPEDVED 123

Query: 222 ------QEIKNDK-IALILGAEGKGLRPKTQETATSM------AHLHMPGIIKALNVSNA 268
                  E + DK + +++G+EG+GL  +TQ+    M        LH PG + +LNVS A
Sbjct: 124 VPVISCSEFQWDKPVIVVIGSEGEGLSLETQQQCQRMLAIPPGRALH-PG-LDSLNVSVA 181

Query: 269 AAVALY 274
           A + L+
Sbjct: 182 AGILLH 187


>gi|15611567|ref|NP_223218.1| hypothetical protein jhp0500 [Helicobacter pylori J99]
 gi|4155040|gb|AAD06078.1| putative [Helicobacter pylori J99]
          Length = 227

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 10/226 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   ++  LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   IYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KR 167
             HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    R
Sbjct: 61  GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVRNIGGIFRSAYCLGMDGVILDFAR 120

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
               E  V  +S+ G +  +P+  + N  D + ++ + GF  +G S       E  +   
Sbjct: 121 EFAYEGIV--RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAEN-LSLK 177

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 178 KCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|325830209|ref|ZP_08163666.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
 gi|325487676|gb|EGC90114.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
          Length = 283

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 17/199 (8%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV   P   + K+ G E     L     P L    D VR ++ + VL+ + +  N+GAI 
Sbjct: 82  PVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRIAVLEDITNHTNVGAIF 141

Query: 152 RSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRISNLT------------DA 198
           RSA A   D ++ T   Y P     + + + G +  +P+ RI                  
Sbjct: 142 RSAAALGIDAVLVTPACYDPLYRRAV-RVSMGTVFQVPWTRIGEEAGAGATGTGGWAPTG 200

Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLH 255
           +  +H  GF+T   + +D   PL+    N  +++AL+ G EG GL   T         + 
Sbjct: 201 VPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDYTVRIP 260

Query: 256 MPGIIKALNVSNAAAVALY 274
           M   + +LNV+ A+AVA +
Sbjct: 261 MACGVDSLNVAAASAVAFW 279


>gi|144575178|gb|AAZ43977.2| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 239

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 42/255 (16%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDW 83
           ++YKK+Q  N+K R   Q     L G + +S A       +  L ++K+ +     R+D+
Sbjct: 12  KEYKKLQ--NKKYRKEKQQ--FLLEGFNLISEA--KKYTNVITLESSKDLIYKDSIRVDY 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  + H    K+  PQ+I   +G            A  L PT + +  +   ++L++V+D
Sbjct: 66  EI-IKHLSETKS--PQSI---IG-----------VASFLKPT-NKINKT---VILNNVSD 104

Query: 144 PHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGAL-EHIPYIRISNLTDALQ 200
           P NIG ILRSA+AF  D +I      Y+P     + +S+ GA+  ++  I  SNL + L+
Sbjct: 105 PGNIGTILRSALAFEFDTVIIENIDIYNPK----IIRSSLGAIFSNLNIISTSNLEEILK 160

Query: 201 KMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            + +  F+     L  ++KK  E    N+KIA+++G E  G+     + A+    +++P 
Sbjct: 161 DLKAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASE--KVYIPI 218

Query: 259 IIKALNVSNAAAVAL 273
             ++LNV++A A+ L
Sbjct: 219 AFESLNVASALAIIL 233


>gi|296133375|ref|YP_003640622.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
 gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
          Length = 268

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 10/247 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPF 91
           +QS  QK ++  +     + G+  V  AL + +  I +L+     L +   + + +P   
Sbjct: 16  LQSLLQK-KYRDREGKFLVEGLRFVQEALQSGA-DIEELILAAGVLEKNPSFQSIIPDKI 73

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P+  +  Q   KI   E   QG+A  +      +  L  V N   L+++D V DP N+G 
Sbjct: 74  PITIIADQLFKKITDTET-PQGIAALVRKKEFRAEDLFVVANP-FLLIIDKVQDPGNLGT 131

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGF 207
           I+R+A A    G+   K  +   +    ++  G++ H+P I   ++ +A  L K H    
Sbjct: 132 IIRTADAAGVTGVALVKGTADLYNPKTLRATMGSVFHVPIINFDSIEEACHLAKKHGLKL 191

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               +S DS   L  +  ++ +AL++G E +G      E +     + MPG  ++LNVS 
Sbjct: 192 IVTDISKDSSSYLAVDY-SEPVALVVGNEARGASSFAIENSDYRVAIKMPGKAESLNVSV 250

Query: 268 AAAVALY 274
           AA + L+
Sbjct: 251 AAGIILF 257


>gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 290

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 1/140 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD V DP N+G I+R+A A   DGII + + +   +  + + A G++ H+P ++   L
Sbjct: 143 VILDDVQDPGNVGTIIRTADAAGFDGIICSSKTADIYNEKVLRGAMGSVFHLPVLQTGAL 202

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHL 254
              +  +   G + IG S   K  L   +   K + +ILG E KG+     +    +  L
Sbjct: 203 EKTVLFLKEQGTRMIGTSLQGKTSLSASLAAQKAVGIILGNESKGMSKSMADLCDDLYKL 262

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G  ++LNVS AA + +Y
Sbjct: 263 PMYGHAESLNVSVAAGILMY 282


>gi|313113411|ref|ZP_07799000.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624138|gb|EFQ07504.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 275

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 8/196 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   +T+  + G E     L     PL     +  RN++ + VL+ + D  N+GAI 
Sbjct: 80  PVYTADRETLASLTGFELTRGVLCAFRRPLPRSVEEVCRNARRVAVLEGIVDSTNVGAIF 139

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-----TDALQKMHSWG 206
           RSA A + D ++ T            + + G +  +P+ +I         + + ++HS G
Sbjct: 140 RSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGIAQLHSLG 199

Query: 207 FQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+T  ++ SD    ++        K+A++LG EG GL   T         + M   + +L
Sbjct: 200 FKTAAMALSDRSVSIDDSALSAEPKLAIVLGTEGDGLAHSTIAACDYTVKIPMSHGVDSL 259

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A+AVA +   N 
Sbjct: 260 NVAAASAVAFWQLGNR 275


>gi|71894580|ref|YP_278688.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 237

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 129/255 (50%), Gaps = 42/255 (16%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDW 83
           ++YKK+Q  N+K R   Q     L G + +S A       +  L ++K+ +     R+D+
Sbjct: 10  KEYKKLQ--NKKYRKEKQQ--FLLEGFNLISEA--KKYTNVITLESSKDLIYKDSIRVDY 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  + H    K+  PQ+I   +G            A  L PT + +  +   ++L++V+D
Sbjct: 64  EI-IKHLSETKS--PQSI---IG-----------VASFLKPT-NKINKT---VILNNVSD 102

Query: 144 PHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGAL-EHIPYIRISNLTDALQ 200
           P NIG ILRSA+AF  D +I      Y+P     + +S+ GA+  ++  I  SNL + L+
Sbjct: 103 PGNIGTILRSALAFEFDTVIIENIDIYNPK----IIRSSLGAIFSNLNIISTSNLEEILK 158

Query: 201 KMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            + +  F+     L  ++KK  E    N+KIA+++G E  G+     + A+    +++P 
Sbjct: 159 DLKAQNFKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASE--KVYIPI 216

Query: 259 IIKALNVSNAAAVAL 273
             ++LNV++A A+ L
Sbjct: 217 AFESLNVASALAIIL 231


>gi|332292458|ref|YP_004431067.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170544|gb|AEE19799.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 244

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 71/141 (50%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++LD ++D  N GAI+R+A      GII  K+     + V  K+++GA  +IP  ++ 
Sbjct: 97  LFILLDQLSDVRNFGAIIRTAECTGVHGIIIPKKGGAPVNGVAIKTSAGAAFNIPIAKVD 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ DA+  +   G Q +  +  ++  L +       A+++G E  G+ P   +     A 
Sbjct: 157 HIKDAIYYLQGSGVQVVAATEKTETTLFETDFTSPTAIVMGREDSGVSPGVLKIVDKQAK 216

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L + G I +LNVS A    LY
Sbjct: 217 LPLKGSIASLNVSVACGAFLY 237


>gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
           E980]
 gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
           E980]
          Length = 254

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-QDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           T+ +  M   GF   G   ++    L++  K+D  A+I+G EG+G+  +         ++
Sbjct: 171 TEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|302530010|ref|ZP_07282352.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
 gi|302438905|gb|EFL10721.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
          Length = 233

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L+  LD  R    +++LD +  P N+G ILR+A A    G+I  +R   +   ++ KS++
Sbjct: 73  LAAALDDRRPPARVLLLDGITTPANVGMILRTATAAGLSGVIVPRRGVAALDPMVVKSSA 132

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G     P +R  +  +A + +   G+    L + +   +       + A +LG E +G+ 
Sbjct: 133 GVAFRAPVLRCGSAREAAELLVEAGYSLFALGASATTSIFDAELPQRSAFVLGGETEGVG 192

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAV 271
               E  T    + MPG +++LNVS AAAV
Sbjct: 193 EAVAELVTEWLSIPMPGDVESLNVSAAAAV 222


>gi|303242604|ref|ZP_07329080.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
 gi|302589861|gb|EFL59633.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
          Length = 267

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 119/263 (45%), Gaps = 36/263 (13%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--------SRKIFQLLATKNALARLD 82
           K++++  +K ++  Q    F+ G+  V  AL           S K+  +   K  L +L+
Sbjct: 13  KEIKALKEK-KYRDQTGLFFIEGIRFVEEALKEKIEISKILVSDKLADVHGGKEILEQLE 71

Query: 83  WDANLPHPFPV---------KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NS 132
            ++N  + + +          T  PQ I  I+ K+++              +L++V  N 
Sbjct: 72  -NSNCCNVYTLTNKLYMEVTDTENPQGILAILNKKSI--------------SLESVYDNK 116

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VLD + DP N+G I+R+A A    G+I +K      +  + +S  G+L HIP    
Sbjct: 117 NFFLVLDSLQDPGNMGTIIRTADAAGVTGVIVSKGCVDVYNPKVLRSTMGSLFHIPICYS 176

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            N+   L++M + G +      S SK   E + K D IA+I+G E  G+       +  +
Sbjct: 177 ENILQTLEEMKNKGIRLCAAHLSGSKNYFELDYK-DNIAIIVGNEANGISDSVAGISNEL 235

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M G  ++LN S AA + +Y
Sbjct: 236 VRIPMAGKSESLNASVAAGLLMY 258


>gi|109947425|ref|YP_664653.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
 gi|109714646|emb|CAJ99654.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
          Length = 227

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 8/225 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   V   LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   IYGKQVVMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+       ++ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I     
Sbjct: 61  GNHQGILARVELPIAISLKEIKKAQKLLVLCSITDVGNIGGIFRSAYCLGMDGVILDFAK 120

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G +     P ++ +   K
Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVVPNTLDLINELKTSGFLCLGANMQGSSP-KEYLALKK 178

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 179 CALFLGSEHEGLSKKILAKMDTILSIKMRRDFDSLNVSVAAGILM 223


>gi|229823223|ref|ZP_04449292.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
 gi|229787389|gb|EEP23503.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
          Length = 255

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 127/281 (45%), Gaps = 31/281 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++ KI + K    AK R+    Y                    + G H V  A
Sbjct: 1   MEVIQSKQNPKIKAWKKLATAKGRQKAGQY-------------------LIEGTHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTID--KIVGKEAVHQGLALE 117
           L +  + +  L+AT      LD+D + LP       +   + +  K + +    QG+ + 
Sbjct: 42  LKS-GQPVRHLVAT------LDYDLSQLPDQALSLPLLLVSPELLKDLSETPTPQGI-MA 93

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              L S  LD   + Q  ++LD V DP N+G ++R+A A + DG+I  K      +  + 
Sbjct: 94  IIDLPSSPLDWQPSGQRYLILDAVQDPGNLGTLIRTADAAAYDGVILGKGTVDVYNDKVL 153

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAE 236
           +++ G+L H+  + +  L +A     + G   +  +   +    QE+  N K+AL+LG E
Sbjct: 154 RASQGSLWHLEVVSLDLLQEARPAFEAAGIPWLVTALHQEAKAYQEVPANQKLALVLGNE 213

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G+G+     + A    ++ MPG  ++LNV+ A  + ++  Q
Sbjct: 214 GQGVSEAVIQVADQTIYIPMPGQAESLNVAVAGGILMFYFQ 254


>gi|153855701|ref|ZP_01996715.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
 gi|149751924|gb|EDM61855.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
          Length = 289

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + + K+ G +     L       L    +       + VL++V +P N+GAI 
Sbjct: 95  PVYTAEFEVLTKLTGFKLTRGMLCAMKRRRLPGLQEICSGCDRIAVLENVMNPTNVGAIF 154

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT----DALQKMHSWGF 207
           RSA A   D +I T   S       ++ + G +  IP+  + N      + ++ +   GF
Sbjct: 155 RSAAALHMDAVILTGGCSNPLYRRASRVSMGTVFQIPWTFVDNSVIWPEEGMKILRELGF 214

Query: 208 QT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +T  + L  DS    + E+ K DK+A+ILG EG GL P+T         + M   + +LN
Sbjct: 215 KTAAMALKEDSASIDDPELMKEDKLAVILGTEGDGLAPETIADCDYTVMIPMSHGVDSLN 274

Query: 265 VSNAAAVALY 274
           V+ A+AVA +
Sbjct: 275 VAAASAVAFW 284


>gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
 gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
 gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
 gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68]
 gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
 gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
 gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0082]
 gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
 gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
 gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
 gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68]
 gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
 gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
 gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0082]
          Length = 254

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           T+ +  M   GF   G   ++    L++  K+D  A+I+G EG+G+  +         ++
Sbjct: 171 TEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|262382068|ref|ZP_06075206.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           2_1_33B]
 gi|262297245|gb|EEY85175.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           2_1_33B]
          Length = 248

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 109/238 (45%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDK 103
           EN  ++G+  V  A+    +++ ++L  ++    L    ++       PV+ VP + +D+
Sbjct: 3   ENEMVFGIRAVIEAIQ-ADKEVDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG+    + +   +L+ +            +++LD V D  N GAI R+   
Sbjct: 62  LTRKN--HQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+   + S S +A   K+++GAL  +P  +  ++   ++ +   G +    S  +
Sbjct: 120 AGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQVIRFLQQSGVKVFAASEKA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +          +A+++GAE  G+ P+      +M  +   G I +LNVS A ++ +Y
Sbjct: 180 AENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVY 237


>gi|297180013|gb|ADI16238.1| rRNA methylases [uncultured bacterium HF0010_16H03]
          Length = 241

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD+V DP N+GA +R A     D +I  K      +AV  K + G  E I    ++
Sbjct: 92  LILILDNVIDPRNLGACIRCAAVAGVDAMIINKHQCAPLNAVAHKVSVGGAEVIKLFHVT 151

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL + L+ ++       GLS  + +   +       ALI+GAE  G+R KT E      +
Sbjct: 152 NLINCLKFLNEKNINIYGLSEHADESYHECNFKFATALIMGAEESGIREKTLERCDHKIN 211

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           L    + K+ NVS A  + L
Sbjct: 212 LSGNKLFKSFNVSVATGIIL 231


>gi|300856606|ref|YP_003781590.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300436721|gb|ADK16488.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 260

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 7/195 (3%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N    FPV  +       +V  E   QG+A   A + +  L A       ++ D + DP 
Sbjct: 69  NFQCDFPVYFMEKGVFKAMVNTEN-PQGIA---AVVENRELKASNKEGFYILADKIQDPG 124

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA A    G+I TK      +    +S  G++ H+P I   +L   ++ +   
Sbjct: 125 NMGTIIRSAHASGALGVIITKGTVDIYNEKTLRSTMGSIFHVPVIYDEDLK-KVELLRKS 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF+ IG S D+           K+ + +G EG GL    Q+ +     + MPG  ++LNV
Sbjct: 184 GFKLIGSSLDTDISFYSANLKGKVIIAVGNEGNGLSKTIQDISDIKVKIPMPGGAESLNV 243

Query: 266 SNAAAVALY--ITQN 278
           S AA++ ++  + QN
Sbjct: 244 SAAASIMMFEAVRQN 258


>gi|297182173|gb|ADI18344.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
          Length = 172

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 1/143 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++LD V  P+N+GAILR+A A+    +      +P   A  AK+A G   ++ +   
Sbjct: 23  EVALLLDSVQTPYNVGAILRTAAAYRVAHLWLAGSTAPPTHAKTAKTALGTGRYLTWTIC 82

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +++A++ + + G+  +G+  +D   P+ +    +K  L  G E +GL   T      +
Sbjct: 83  EEVSEAIEGIRAAGYGLVGVELADQAVPINEAALPEKACLAFGHEDRGLSATTLAACDVV 142

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           A +   G + +LNVS AA +ALY
Sbjct: 143 AFIPQLGKVGSLNVSTAAGIALY 165


>gi|45187604|ref|NP_983827.1| ADL269Wp [Ashbya gossypii ATCC 10895]
 gi|44982342|gb|AAS51651.1| ADL269Wp [Ashbya gossypii ATCC 10895]
          Length = 397

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 122/287 (42%), Gaps = 62/287 (21%)

Query: 39  KSRHTSQP---ENLF--LYGVHTVSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFP 92
           KSRH   P   + L   +YG +++  AL +  R+ F +LL + N   ++   A L     
Sbjct: 102 KSRHAFDPLTPDPLLDRIYGRNSILLALQSNRREYFVRLLHSGNLDPQI---AKLAGQLG 158

Query: 93  VKTVPPQTID-KIVGKEAVHQGLALETAPLLSPTLDAV---------------------- 129
           +K    Q     ++   AVH GL LE  PL    ++A+                      
Sbjct: 159 IKVQSAQRHQLNMMTNNAVHNGLVLEAKPLYPQEINALGAVDHEAGTFELIDQWSNNGTA 218

Query: 130 ----------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                     +   + + LD V DPHN+GAILRSA     D +  + R S   SA ++K+
Sbjct: 219 QKVPFLQSAKKRYPVGLYLDEVVDPHNVGAILRSAYFLGADFVAVSHRNSAPLSAAVSKT 278

Query: 180 ASGALEHIPYIRISNLTDALQKM---HSWGF------QTIGLSSDSKK---PLEQE---I 224
           +SGALE +P   +       ++    H W F      Q  G+SS  K    P+E      
Sbjct: 279 SSGALEVLPIYSVDKPLQFFERSRDEHDWVFVASHLTQGPGISSHVKNRVLPIEDMADLA 338

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHM-----PGIIKALNVS 266
           ++  + L++G EG G+R   Q+ +     +       P ++ +LNVS
Sbjct: 339 QSSPVMLVVGNEGTGIRSNLQQRSDFFVQVPFGRADEPQLVDSLNVS 385


>gi|312886272|ref|ZP_07745886.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
           paludis DSM 18603]
 gi|311301297|gb|EFQ78352.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
           paludis DSM 18603]
          Length = 269

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 17/253 (6%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHP 90
           +M   N+  R  +Q     ++G+  V  A+ +  ++I  L   +     L ++  NL + 
Sbjct: 11  EMSFRNEPKREYNQ----MVFGIRAVIEAIRS-GKEIESLFIQRGLGGELFYELKNLLNE 65

Query: 91  FPVKT--VPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHV 141
           + +++  VP + ++++  K   HQG+    +P+       + P +       L+++LD V
Sbjct: 66  YKIESQQVPVEKLNRVTTKN--HQGVIAIISPITYYKIEDIIPMVFEKGEVPLILILDGV 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+GAI R+A       I+   + S   +    K+++GAL +IP  R S+L   ++ 
Sbjct: 124 TDVRNVGAIARTAECAGVHAIVVPAKGSAQINPDTIKTSAGALYNIPVCRESSLLQTVKF 183

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + S G Q +  +  +   +         A+++G E  G+  +    A  +A + M G I+
Sbjct: 184 LQSSGLQIVCCTEKTTDFIYAPDYTLPTAIVMGGEDDGVSNEIIRIADHLAKIPMYGEIE 243

Query: 262 ALNVSNAAAVALY 274
           +LNVS +  V LY
Sbjct: 244 SLNVSVSTGVILY 256


>gi|240144927|ref|ZP_04743528.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
 gi|257203016|gb|EEV01301.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
          Length = 296

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 15/197 (7%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H  PV     + + KI G +     L     P LS      +N++ + +L++V +P N+G
Sbjct: 96  HVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVVNPTNVG 155

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSAS----GALEHIPYIRISNLT----DALQ 200
           AI RSA A   D ++ T    P+ +  L + AS    G +  IP+            A+ 
Sbjct: 156 AIFRSAAALGMDAVLLT----PACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGAMD 211

Query: 201 KMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +H  G++T  ++  D    ++ E  +  +K+A++LG EG GL   T         + M 
Sbjct: 212 VLHKLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMT 271

Query: 258 GIIKALNVSNAAAVALY 274
             + +LNV+ A+AVA +
Sbjct: 272 HGVDSLNVAAASAVAFW 288


>gi|242310426|ref|ZP_04809581.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239522824|gb|EEQ62690.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 228

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 3/163 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG  LE  PL       ++    ++VL  ++D  N+G+I RSA A   DGI+       
Sbjct: 61  HQGYLLEIKPLEVLEFSKIKEMDFVLVLCGISDVGNLGSIFRSAYALGVDGIVVCGIKDF 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            +  VL +++SGA+  +P+  + N  D + ++    F   G +S   K L+  +   K A
Sbjct: 121 KQEGVL-RASSGAMLGMPFCVVHNPLDVINELKQSDFTLFG-TSMQGKDLQNALSGKK-A 177

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L LG+EG GL  K          + M     +LNV  A A+ +
Sbjct: 178 LFLGSEGHGLSNKILAKMDYNLTIPMKREFDSLNVGVAGAILI 220


>gi|146423438|ref|XP_001487647.1| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 395

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 130/321 (40%), Gaps = 67/321 (20%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           K++ Y+  R + R+    +     +  +  P   ++YG H V AAL    R  F  L   
Sbjct: 72  KEAEYSSQRESSRETTSYRP----TGMSRNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127

Query: 76  NALARLDWDANLPHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTL------- 126
           N         +      +  V  Q+     I+    VH G+ LET PL  P +       
Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQSKGDMNILADNGVHNGVVLETKPLEIPFIHELGVCD 187

Query: 127 -----------DAVRNSQ--------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                      + + NSQ              L + LD + DP N+GAI+R+A     D 
Sbjct: 188 PEAEEYDVSITNEILNSQTPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAYYMGVDF 247

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+  +  +     V AK+A+G+L+ +   + S+    ++++   G+  I  SS + + L+
Sbjct: 248 IVVPEHDTARLGPVAAKAAAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQTSESLQ 307

Query: 222 QE--IKNDKIA-----------------------LILGAEGKGLRPKTQETATSMAHLHM 256
           Q+  +K+ K+                        L++G+EG G+R   Q  +  +  L  
Sbjct: 308 QDQKLKHQKVQQQLGTKFIDPSELSTIANESPVLLVMGSEGAGVRTHLQLRSDYLVGLSK 367

Query: 257 ----PGIIKALNVSNAAAVAL 273
                GI+ +LNVS A A+ +
Sbjct: 368 GREDEGIVDSLNVSVACALMV 388


>gi|312876807|ref|ZP_07736785.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796426|gb|EFR12777.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 253

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 71/141 (50%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DP N G+I+RSA      GI+   R S   +  + K+++GA+E++   R+ 
Sbjct: 95  FLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIARVV 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G       +   KP+ +        +++G+EGKG+    +E A  +  
Sbjct: 155 NLRRTIEELKEKGIWVFATDASGPKPVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIK 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G + + N S AA +  +
Sbjct: 215 IPQKGYVNSFNASVAAGIIFF 235


>gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 253

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 71/141 (50%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD + DP N G+I+RSA      GI+   R S   +  + K+++GA+E++   R+ 
Sbjct: 95  FLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIARVV 154

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL   ++++   G       +   KP+ +        +++G+EGKG+    +E A  +  
Sbjct: 155 NLRRTIEELKEKGIWVFATDASGPKPVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIK 214

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G + + N S AA +  +
Sbjct: 215 IPQKGYVNSFNASVAAGIIFF 235


>gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
          Length = 265

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 75/148 (50%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           + +     +++LD + DP N G I+R+A A     ++ +K      S  + +S  G++ H
Sbjct: 110 EVIEKGNSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVLRSTMGSVFH 169

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P     N+T+ +Q +   G++ I      K    QE    + A+I+G E  G+  +T  
Sbjct: 170 VPIFEGLNITETIQLLKQKGYKVIASHLSGKNNYFQEDLTGRSAIIVGNEANGISDETAN 229

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A S+  + MPG  ++LN S AA++ +Y
Sbjct: 230 MADSLVKIPMPGKAESLNASVAASIMIY 257


>gi|284038016|ref|YP_003387946.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
           74]
 gi|283817309|gb|ADB39147.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
           74]
          Length = 276

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 38/274 (13%)

Query: 24  RRNHR----DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           RRN R    +YK  +    K ++  QP+ + ++G+ +V            + L +   + 
Sbjct: 4   RRNPRVNRPNYKP-RPGGSKPQYQPQPDEM-VFGIQSV-----------IETLKSDQQID 50

Query: 80  RLDWDANLPHP----------FPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPT 125
           +L  +  L +P            ++ VP + +D+   K   HQG+    A +    LS  
Sbjct: 51  KLYMEKGLSNPDIQNLAFQKRVTIQRVPVERLDRFTRKN--HQGVVCLIAQVQYVKLSNV 108

Query: 126 L-DAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           + D     ++   ++LD + D  N GAI R+A       I+   R + + ++   K++SG
Sbjct: 109 IADVFERGEVPFFLLLDRITDVRNFGAIARTAECTGIQCIVIPGRGAAAINSDAMKTSSG 168

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGL 240
           AL HI   R  +LT+ ++ +   G   +  +  S + L +   +    +A+I+G+E  G+
Sbjct: 169 ALNHISVCREPDLTETVKYLQESGITVVACTEKSARDLYERTTDLTGPMAIIMGSEEDGI 228

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P+      +   + + G + +LNVS A  V LY
Sbjct: 229 SPELLRMVDTHVKIPLLGAVGSLNVSVATGVILY 262


>gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12]
 gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
 gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12]
 gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
          Length = 254

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           T+ +  M   GF   G   ++    L++  K+D  A+I+G EG+G+  +         ++
Sbjct: 171 TEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQEILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|94986499|ref|YP_594432.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
 gi|94730748|emb|CAJ54110.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
          Length = 290

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V D + DP N G I+R+  +    G+I  K           ++A G LE +P  +  
Sbjct: 138 LIVVFDQIQDPGNAGTIIRTLYSLGGAGVIIPKHNGVFLGQDARRAAVGCLERLPISKAI 197

Query: 194 NLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           NL+ A++  +  GF   G S   DSK   E E+K   + LILG+E  G+R + ++   ++
Sbjct: 198 NLSRAIETANEKGFHIYGTSIEKDSKNVFEAELKFPAL-LILGSEKSGIRLQLKKRCHTI 256

Query: 252 AHLHMPGIIKALNVSNAAAVALYI---TQNHFA 281
            H+ M   + +LNV+ A  + +      QN+F 
Sbjct: 257 LHIPMVRDVNSLNVAQAGGIIISCFARCQNNFT 289


>gi|320011830|gb|ADW06680.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 274

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 15/185 (8%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPL------LSPTLDAVRNSQLLMVLDHVND 143
           PV  V P   +++ G   VH+G   +++  PL      LSP    VR    + V + + D
Sbjct: 78  PVYAVTPALAERVTGYH-VHRGALASMQRKPLPDAGALLSPGTGDVRR---VAVFEDIVD 133

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GA  R+A A   D ++ T R +        K + G++ H+P+ R+++  + L  + 
Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLTSWPEDLALLR 193

Query: 204 SWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             GF T  L  SD    L++ +  + +K+AL+ G EG GL P+    A +   + M   +
Sbjct: 194 QAGFTTAALCLSDRSITLDELVARRYEKLALVFGTEGDGLTPRALAAADAHVRIPMDAGV 253

Query: 261 KALNV 265
            +LNV
Sbjct: 254 DSLNV 258


>gi|271501802|ref|YP_003334828.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586]
 gi|270345357|gb|ACZ78122.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586]
          Length = 380

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +  ++ L+ V +PHN+G I+RS   F   G++     S  ES    ++A G  EH+  I 
Sbjct: 231 TDCVLALEDVGNPHNLGGIMRSCAHFGVKGVLVND-ASQLESGAAVRTAEGGAEHVKAIS 289

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
              L DAL +  + G+  +  SS     L Q     K  ++LG EG GL     +     
Sbjct: 290 AEGLVDALAQFRAAGYTIVTTSSHKGTTLSQVSLPAKTVIVLGQEGDGLSDSAWQQGDVK 349

Query: 252 AHLHMPGIIKALNVSNAAAV--ALYITQNH 279
             +   G +++LN+S A  +  A +  Q+H
Sbjct: 350 VSIDGTGNVESLNISVATGILLAEWWRQHH 379


>gi|313665041|ref|YP_004046912.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii
           PG50]
 gi|312949507|gb|ADR24103.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii
           PG50]
          Length = 244

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 33/252 (13%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVK-------TVPPQT 100
            +YG H V           ++LL     + +  W  NL   + F +K        V    
Sbjct: 5   LIYGKHVV-----------YELLKKHKNMVKEIWVKNLKLLNEFDLKNTKIKINVVSENK 53

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSA 154
           +D+++     HQG+  E         D + N        L++VLD ++DP+N GAI+RS 
Sbjct: 54  LDQLLKTNEPHQGIIAEIKDFNYTPFDELINDLNTKEKSLVLVLDQIHDPYNFGAIIRSC 113

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGL 212
              + DGII   +     ++ + K++SG+   I   + +NL +A++ + + GF      L
Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNL 173

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAA 270
           + +S    + +  N K  +I+G E KG+      T  S  ++++P    I + N S A +
Sbjct: 174 NQNSTDMTKTQFAN-KTVVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVACS 230

Query: 271 VALYITQNHFAK 282
           +  +   N+  K
Sbjct: 231 IICFWIANYLNK 242


>gi|319956873|ref|YP_004168136.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319419277|gb|ADV46387.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 270

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 125/272 (45%), Gaps = 17/272 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LAT 74
           K+S +   R     Y++ +SF +K         L +YG + V  AL +PS +I +L L+ 
Sbjct: 4   KNSTHNAQRTTLVSYEEKKSFYEKV--------LTIYGRNPVLEALEDPSLQIHRLHLSE 55

Query: 75  KNALAR-LDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
            N  ++ LD    L       ++T   + + +I       QG+AL+       T DA  N
Sbjct: 56  SNKPSKQLDRMVALAKKRGIEIRTHEKKALSRISKNSRQDQGVALDVVLENLTTPDAFLN 115

Query: 132 SQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187
                 L+ LD V +P N+G I+RS  A   DGI+ + K  +P  S +  K+++G L  I
Sbjct: 116 EHKRFRLIALDRVTNPQNVGMIIRSCAAGRIDGIVMSAKGNAPLVSPLTIKASAGTLFKI 175

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P IR  +L   L+     G +   L S +     +     +   ILG E +G+ P+    
Sbjct: 176 PIIRADSLLGTLRLFREAGAKLYTLDSHASTDYRKLDPTSREVFILGNESEGVSPEIAAL 235

Query: 248 ATSMAHLHMPGIIKALNVS-NAAAVALYITQN 278
           +     + M   +++LNV+  A+ +A  + +N
Sbjct: 236 SDERIAIPMNRGVESLNVAVTASLLAFCLPEN 267


>gi|329769782|ref|ZP_08261183.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
 gi|328838144|gb|EGF87762.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
          Length = 170

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 10/154 (6%)

Query: 129 VRNSQL-------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++N QL       ++++D V DP N+G I+R+A AFS D II  K  +      + +S  
Sbjct: 12  IKNKQLDISKYSRVLIIDQVQDPGNLGTIIRTADAFSFDCIILGKGTTSIYGQKVIRSTQ 71

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGL 240
           G+  HI      ++ D + KM  +      L  D  + LEQ +   +K+A+I G EG G+
Sbjct: 72  GSNFHIDCFDNIDILDVIPKMEDFDLYATSLKGD--RYLEQIDSVGEKVAVIFGNEGSGV 129

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  +   ++  ++M G  ++LNV+ AA + ++
Sbjct: 130 SEEILDKVNNLLKINMTGQAESLNVAVAAGIVMH 163


>gi|294811612|ref|ZP_06770255.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326440200|ref|ZP_08214934.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294324211|gb|EFG05854.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 272

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 13/244 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           RDY  +     + R     E LF+  G   +  A +        LL++K   A  D    
Sbjct: 16  RDYTGLTDVELRRRREPA-EGLFIAEGEKVIRRAKDAGYAMRSMLLSSKWVDAMRDVIDE 74

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVND 143
           LP P  V  V P+  +++ G   VH+G AL +     P  DA      ++ + +++ VND
Sbjct: 75  LPAP--VYAVSPELAERVTGYH-VHRG-ALASM-QRKPEPDAAELLAGARRVAIMEAVND 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIGAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ + 
Sbjct: 130 HTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDGWPKGLEGVR 189

Query: 204 SWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             GF  + L+   K     E+   + D++AL+LGAEG+GL  +    A     + M   +
Sbjct: 190 EAGFTLLALTPHEKAAPIDEVAPHRLDRVALMLGAEGEGLSRRALMAADEWVRIPMAHGV 249

Query: 261 KALN 264
            +LN
Sbjct: 250 DSLN 253


>gi|315054983|ref|XP_003176866.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
 gi|311338712|gb|EFQ97914.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
          Length = 565

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 128/318 (40%), Gaps = 97/318 (30%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84
           S P + F+YG   V+AA+    RK+  L     ++++ L    W+               
Sbjct: 223 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRLGEPKWEQPEIRSIAKYASLAG 282

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135
           A + H   P KT    T+DK+ GK   H G+ LE +PL  P      T+ +  NS  L  
Sbjct: 283 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLGFQTVVSKSNSHFLAQ 337

Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160
                                              ++LD + DP N+GAI RSA  F  D
Sbjct: 338 LAPQPEEQAAVNGTDGHIQFDSRRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 397

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKMHSWGF-------QTIG 211
            I+ + + S   S V+ K+A+GA E IP + + +++  +   + + W F        T+ 
Sbjct: 398 AIVFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQTNGWKFFAADAPDATLA 457

Query: 212 LSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259
                K P       L  E+      L+LG EG GL+ K +  A     + +PG      
Sbjct: 458 NDYTRKIPVTKSLDSLSSELTKAPCVLMLGGEGSGLQQKIKNRADMF--VTIPGAYSDNI 515

Query: 260 ------IKALNVSNAAAV 271
                 + +LNVS A+A+
Sbjct: 516 RDDTAGVSSLNVSVASAL 533


>gi|190345104|gb|EDK36926.2| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 395

 Score = 72.0 bits (175), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 129/321 (40%), Gaps = 67/321 (20%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           K++ Y+  R + R+    +     +  +  P   ++YG H V AAL    R  F  L   
Sbjct: 72  KEAEYSSQRESSRETTSYRP----TGMSRNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127

Query: 76  NALARLDWDANLPHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTL------- 126
           N         +      +  V  Q+     I+    VH G+ LET PL  P +       
Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQSKGDMNILADNGVHNGVVLETKPLEIPFIHELGVCD 187

Query: 127 -----------DAVRNSQ--------------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                      + + NSQ              L + LD + DP N+GAI+R+A     D 
Sbjct: 188 PEAEEYDVSITNEILNSQTPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAYYMGVDF 247

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+  +  +     V AK+A+G+L+ +   + S+    ++++   G+  I  SS + + L+
Sbjct: 248 IVVPEHDTARLGPVAAKAAAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQTSESLQ 307

Query: 222 QE------------------------IKNDK-IALILGAEGKGLRPKTQETATSMAHLHM 256
           Q+                        I N+  + L++G+EG G+R   Q  +  +  L  
Sbjct: 308 QDQKSKHQKVQQQLGTKFIDPSELSTIANESPVLLVMGSEGAGVRTHLQLRSDYLVGLSK 367

Query: 257 ----PGIIKALNVSNAAAVAL 273
                GI+ +LNVS A A+ +
Sbjct: 368 GREDEGIVDSLNVSVACALMV 388


>gi|189911203|ref|YP_001962758.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775879|gb|ABZ94180.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 257

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 101/201 (50%), Gaps = 16/201 (7%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVR-----NSQLLM 136
           A LP+     TV  + +D+I  ++  HQG  +   +    LS   +  +     N   ++
Sbjct: 53  AYLPNSVKFTTVSARELDRI-AQDKNHQGYVIIRTKQKSYLSLGFEQFKQNIKPNEGPVL 111

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195
           +LD + DP N+G +LR+A       ++ + R +   + V+ K ++GA+ HI   R++NL 
Sbjct: 112 ILDRIQDPGNLGNLLRTAECMGVKHVLMSDRDTSPITPVVEKVSAGAIHHIQIYRVANLK 171

Query: 196 --TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA 252
              D L+K   W   T     + ++ + + + +  ++A+I+G EG+G++    E A  +A
Sbjct: 172 HGIDFLKKNEYWILAT---DEEGEEGIWETLPDVSQMAVIMGNEGEGVKRILLEDADYVA 228

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
            + + G + +LNV  A  + L
Sbjct: 229 RIPLYGAVTSLNVVVACGITL 249


>gi|197284301|ref|YP_002150173.1| methyltransferase [Proteus mirabilis HI4320]
 gi|227358559|ref|ZP_03842884.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|194681788|emb|CAR41011.1| putative tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
 gi|227161270|gb|EEI46344.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 367

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 10/160 (6%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +PT D V      + L+ V +PHN+GAI+RS   F   G+I+    S  ES    ++A G
Sbjct: 214 APTKDCV------LALEDVGNPHNVGAIMRSCAHFGVKGVISPD-SSVLESGAAVRTAEG 266

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLR 241
             E+I  I   N    L++    G+  +  SS     PL +    +K+ LILG E  GL 
Sbjct: 267 GAEYIQGIDADNFAQTLEQFKQAGYTLVTTSSHKGSVPLAKAQLPEKMVLILGQEKDGLS 326

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
             T +      ++   G I++LNVS A+ V L  +  Q+H
Sbjct: 327 DSTLKQGDMSIYIGGTGHIESLNVSVASGVLLAEWWRQHH 366


>gi|256830639|ref|YP_003159367.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579815|gb|ACU90951.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 201

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASG-AL 184
           A R   L +VL++++DPHN+ AILRS  AF   G+    TK   PS    LA S+SG A 
Sbjct: 19  ARRQPDLTLVLNNIHDPHNVSAILRSCDAFGVFGVHLYYTKEKFPS----LANSSSGSAK 74

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + I   R       +Q +   G Q +G   S + +P+         A+ILG E +G+ P 
Sbjct: 75  KWIDLTRHREAGPMIQGLRGRGMQIVGTGFSPTARPIMDIDFTRPTAIILGNEHRGMDPD 134

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +       ++ M G++++LNVS AAA  LY
Sbjct: 135 VKIHVPDEIYIPMFGMVQSLNVSVAAATILY 165


>gi|322373861|ref|ZP_08048396.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
 gi|321277233|gb|EFX54303.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
          Length = 245

 Score = 72.0 bits (175), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 94/185 (50%), Gaps = 9/185 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           VK V P+ + ++  +    QG+  E A       +++    LL  L+ V DP N+G ++R
Sbjct: 65  VKLVSPEVLKELC-ETQTPQGIVAEVAKESQSLPESLSGKYLL--LEDVQDPGNVGTMIR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210
           +A A   DG+  + + +   +    +S  G+  H+P  R  I  + +  QK    GF  +
Sbjct: 122 TADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPIFEMIETCQKQ---GFPIL 178

Query: 211 GLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             +  +     + +K +D  AL++G EG+G+     E+A  + H++MPG  ++LNV+ AA
Sbjct: 179 ATTLSTVSVDYRAVKTDDNFALVMGNEGQGISQDMAESANQLVHINMPGRAESLNVAVAA 238

Query: 270 AVALY 274
            + ++
Sbjct: 239 GILMF 243


>gi|260565194|ref|ZP_05835678.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260565921|ref|ZP_05836391.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261758764|ref|ZP_06002473.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|260151262|gb|EEW86356.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155439|gb|EEW90519.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261738748|gb|EEY26744.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
          Length = 242

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 71  LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125
           LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+   ++ P L   
Sbjct: 30  LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 88

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L A+    L++VL  +++  N+G+I R+A AF  D ++  +           + + GA  
Sbjct: 89  LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 148

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG+GL  +  
Sbjct: 149 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 208

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E   + A + M     +LNV+ A+ +AL
Sbjct: 209 ERLET-ARIPMSKTFDSLNVATASGIAL 235


>gi|78358620|ref|YP_390069.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78221025|gb|ABB40374.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 253

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L++ LD V DP N G + R+  A    GII  K  + +  +   K+++GAL  +P  R 
Sbjct: 103 KLVLALDQVQDPGNAGTLARTLYALGGGGIIMPKHNASALGSAAVKASAGALARLPVARA 162

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETATSM 251
           +NL+ AL+     GF       D         + D  A L+LG E KG+RP   +  T+ 
Sbjct: 163 TNLSRALETAADQGFSIYAARFDDGSVNAFTARLDTPAVLVLGNEDKGVRPGVAKRCTAS 222

Query: 252 AHLHMPGIIKALNVSNAAAV 271
            H+ M     +LNV+ A A+
Sbjct: 223 IHIPMQREFDSLNVAQAGAM 242


>gi|237733780|ref|ZP_04564261.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
 gi|229383118|gb|EEO33209.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 238

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 6/145 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + DP NIG ++R+A+AFS D +I +       +  L +S  GA  H+  I   NL
Sbjct: 99  LLLDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIY-GNL 157

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T  + ++   G   IG + ++ K + Q  +  K+A ++G EG G+ P+       + ++ 
Sbjct: 158 TQLISQLQEKGVVVIGSALENGKNIAQINRYSKMAFVVGNEGNGMNPEVLAKCDDIGYIP 217

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           +   I++LNV+ A ++ +Y    HF
Sbjct: 218 I-NTIESLNVAIAGSIMMY----HF 237


>gi|319408924|emb|CBI82581.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           schoenbuchensis R1]
          Length = 271

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 10/194 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P+  VP + +D I G   VH+G+      +T P L   L  +    L+ VL  +++  N+
Sbjct: 78  PIYCVPQKVMDDIAGFH-VHRGMLGIGERKTLPSLQDFLQNLPEKTLVPVLCGISNHDNM 136

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A AF+  GII  K           + + GA   IPY + +++   ++ ++   F
Sbjct: 137 GAIFRNAAAFASHGIIVDKTSCDPLYRKAIRVSVGAALKIPYTQGADIDSIIEALNDADF 196

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               LS  + + L++     + A+ILGAEG GL     + + ++  + M     +LNV+ 
Sbjct: 197 HLYALSPSAPRYLKEAKSTKRTAIILGAEGDGLPAHILQKSETL-RIPMAYGFDSLNVAT 255

Query: 268 AAAVALYITQNHFA 281
           A+ +AL     HFA
Sbjct: 256 ASGIAL----AHFA 265


>gi|306844590|ref|ZP_07477177.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
 gi|306275034|gb|EFM56797.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
          Length = 228

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 71  LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125
           LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+   ++ P L   
Sbjct: 16  LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 74

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L A+    L++VL  +++  N+G+I R+A AF  D ++  +           + + GA  
Sbjct: 75  LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 134

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG+GL  +  
Sbjct: 135 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 194

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E   + A + M     +LNV+ A+ +AL
Sbjct: 195 ERLET-ARIPMSKTFDSLNVATASGIAL 221


>gi|146312707|ref|YP_001177781.1| putative methyltransferase [Enterobacter sp. 638]
 gi|145319583|gb|ABP61730.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638]
          Length = 365

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+GA++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 218 CVLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAAIVESGAAIRTAEGGAEHVQPITGE 276

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ DA+++    G+  +  SS +  PL Q     K+ L+LG E  GL      TA     
Sbjct: 277 SVLDAIEEFRKAGYSIVTTSSHTGTPLFQATLPRKMVLVLGQERDGLSDAALSTADLSVS 336

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 337 IEGTGKVESLNVSVATGVLLAEWWRQN 363


>gi|108562956|ref|YP_627272.1| hypothetical protein HPAG1_0531 [Helicobacter pylori HPAG1]
 gi|107836729|gb|ABF84598.1| 23S rRNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 227

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   ++  LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVITHLLNSHKEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I 
Sbjct: 57  LAKGGNHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E  +
Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|83319473|ref|YP_424103.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283359|gb|ABC01291.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
          Length = 244

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 22/234 (9%)

Query: 68  IFQLLATKNALARLDWDANLP--HPFPVK-------TVPPQTIDKIVGKEAVHQGLALET 118
           I++LL     + +  W  NL     F +K        V    +D+++    +HQG+  + 
Sbjct: 12  IYELLKKHKNMVKEIWVKNLKLLDEFDLKNTKIKINVVSENKLDQLLKTNELHQGIIAQI 71

Query: 119 APLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                   D + N        L++VLD ++DP+N GAI+RS    + DGII   +     
Sbjct: 72  KDFNYTPFDELLNDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQV 131

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIA 230
           ++ + K++SG+   I   + +NL +A++ + + GF      L+ +S    + +  N K  
Sbjct: 132 NSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTKTQFAN-KSV 190

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQNHFAK 282
           +I+G E KG+      T  S  ++++P    I + N S A ++  +   N+  K
Sbjct: 191 VIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|153840022|ref|ZP_01992689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
           parahaemolyticus AQ3810]
 gi|149746420|gb|EDM57441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
           parahaemolyticus AQ3810]
          Length = 128

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 63/113 (55%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++   + 
Sbjct: 6   IIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATHDIY 65

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+
Sbjct: 66  QAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLF 118


>gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
 gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
          Length = 243

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD V DP N+G I+R+AV+F  D ++ +       +  + +S  GAL HIP IR  +
Sbjct: 102 VIVLDDVQDPGNVGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIPVIR-GD 160

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +   L  +   G + +  S  +   L +    D  AL+ G EGKG+  +    A +   +
Sbjct: 161 VQAMLMSLKQKGNRILATSLHNASALREIAVPDAFALVFGNEGKGVSEEVLRLADTHVFI 220

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + +Y
Sbjct: 221 EMH-TFESLNVAVAAGICMY 239


>gi|332299742|ref|YP_004441663.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176805|gb|AEE12495.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 247

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 14/243 (5%)

Query: 50  FLYGVHTVSAALNNPSR--KIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H ++ +L + S   KI+ +  A    L  +   A      PV  VP + +++   
Sbjct: 6   LIYGIHALNESLASHSDIDKIYMKKGAVTGELLEIKRTAR-TQGVPVMEVPAERLNRF-- 62

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+    +P+       L P L        +++LD V D  N GAI R+      
Sbjct: 63  TRGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+  +R S S +A    +++GAL  IP  R  +L  A + +   G Q +G   D+   
Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDATTN 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
                    + +++G+E KG+     +  T    +   G I +LNVS A  + LY + + 
Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242

Query: 279 HFA 281
           H A
Sbjct: 243 HNA 245


>gi|288920452|ref|ZP_06414761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
 gi|288348181|gb|EFC82449.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
          Length = 288

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 26/202 (12%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQG-LA-------LETAPLLSPTLDAVRNSQLLMVLD 139
           P P PV    P  +  I G E VH+G LA       L+ A LLS        ++ ++V +
Sbjct: 86  PAP-PVYLAGPAVLAAITGFE-VHRGALASMCRREPLDPAHLLS-------TARRVLVCE 136

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            +    N+GAI RSA     D ++ + R +        + + G +  +PY R+     AL
Sbjct: 137 DLVSHTNLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPAAL 196

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEI------KNDKIALILGAEGKGLRPKTQETATSMAH 253
             + + GF+ + L+     P  QE+       +D++A++LG EG GL  +   TAT  A 
Sbjct: 197 SLLRTAGFEVVALT---PAPDAQELTAAWAAPDDRVAVLLGTEGSGLTDQVLATATRRAR 253

Query: 254 LHMPGIIKALNVSNAAAVALYI 275
           + M   + +LNV+  AA+A Y+
Sbjct: 254 IPMAHGVDSLNVAATAAIACYV 275


>gi|297195464|ref|ZP_06912862.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152803|gb|EFH31995.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 272

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 7/180 (3%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P PV  V P   +++ G   VH+G   +++  PL     + +  ++ ++V++ VND  NI
Sbjct: 76  PAPVFAVDPALAERVTGYH-VHRGALASMQRKPL-PDAAELLGTARRVVVMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAGF 193

Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + + L+ D K     E    + +++AL+LGAEG GL  K    A     + M   + +LN
Sbjct: 194 RLLALTPDEKATSIDEAAPHRLERVALMLGAEGDGLSTKALMAADEWVRIPMSHGVDSLN 253


>gi|88856437|ref|ZP_01131095.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814304|gb|EAR24168.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 266

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 86/161 (53%), Gaps = 6/161 (3%)

Query: 110 VHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +H+G+  +++  PL +PT + + +++ +++L++V DP N+GAI RS      D ++ T++
Sbjct: 93  LHRGVIASMQRPPLPTPT-ELLTDARRIVILENVVDPTNVGAIFRSVAGIGADAVLVTEQ 151

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226
            S        + + G +  +P+ RI N  D    + + GFQ   L+  D    L     +
Sbjct: 152 CSDPFYRRAIRVSMGTVLQVPWTRIGNWADTRVLLTASGFQIAALALEDGAVSLRDYAAD 211

Query: 227 --DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             +K+AL+LG EG GL  +  + A ++  + M   I +LNV
Sbjct: 212 APEKVALVLGTEGHGLTREAIDAADTIVQIPMRHGIDSLNV 252


>gi|21220051|ref|NP_625830.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|256788841|ref|ZP_05527272.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289772734|ref|ZP_06532112.1| rRNA methylase [Streptomyces lividans TK24]
 gi|7106669|emb|CAB76071.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|289702933|gb|EFD70362.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 272

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 7/180 (3%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P PV  V P   +++ G   VH+G   +++  PL       +  ++ ++V++ VND  NI
Sbjct: 76  PAPVYVVDPALAERVTGYH-VHRGALASMQRKPL-DTAAGLLTTARRVVVMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D I+ +   +        K + GA+  +PY R+      L  +   GF
Sbjct: 134 GAIFRSAAALGMDAILLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPAGLAAVGEAGF 193

Query: 208 QTIGLSSDSK-KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             + L+ D + +PL+     + D++AL+LGAEG GL  +    + +   + M   + +LN
Sbjct: 194 TLLALTPDERAEPLDAVAPHRMDRVALMLGAEGSGLTRRALAASDTWVRIPMSHGVDSLN 253


>gi|116670673|ref|YP_831606.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116610782|gb|ABK03506.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 269

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N++ + VL+ + D  N+GAI RSA A   D ++ + R          + + G +  +P+ 
Sbjct: 117 NARRVAVLEDIVDHTNVGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWA 176

Query: 191 RISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQET 247
           R+ +    L  +   GF    + L+ D+    E   +N DK+AL+LG EG G+ P+T   
Sbjct: 177 RLESWPGDLAVLREQGFTVAAMELTDDAVDVDELAARNLDKLALVLGTEGAGMSPETLSA 236

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + M   + +LNV+ A+AVA +
Sbjct: 237 VDLAVRIPMRAGVDSLNVAAASAVAFW 263


>gi|167754583|ref|ZP_02426710.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
 gi|167705415|gb|EDS19994.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
          Length = 238

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 6/145 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + DP NIG ++R+A+AFS D +I +       +  L +S  GA  H+  I   NL
Sbjct: 99  LLLDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIY-GNL 157

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T  + ++   G   IG + ++ K + Q  +  K+A ++G EG G+ P+       + ++ 
Sbjct: 158 TQLISQLQEKGVVVIGSALENGKNIAQINRYSKMAFVVGNEGNGMNPEVLAKCDDIGYIP 217

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           +   I++LNV+ A  + +Y    HF
Sbjct: 218 I-NTIESLNVAIAGGIMMY----HF 237


>gi|148560365|ref|YP_001259457.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148371622|gb|ABQ61601.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
          Length = 226

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 71  LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125
           LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+   ++ P L   
Sbjct: 14  LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 72

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L A+    L++VL  +++  N+G+I R+A AF  D ++  +           + + GA  
Sbjct: 73  LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 132

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG+GL  +  
Sbjct: 133 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRFL 192

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E   + A + M     +LNV+ A+ +AL
Sbjct: 193 ERLET-ARIPMSKTFDSLNVATASGIAL 219


>gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15]
 gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15]
          Length = 254

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-QDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           T+ +  M   GF   G   ++    L++  K+D  A+I+G EG+G+            ++
Sbjct: 171 TEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQGVSQGILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|307721830|ref|YP_003892970.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979923|gb|ADN09958.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
           autotrophica DSM 16294]
          Length = 228

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +Y    +   +NN  +KI  L   K  L + ++   +   F +K +P +   K+  K 
Sbjct: 1   MLIYAKQPIYYLINNYPQKIKTLYLAKE-LDKKEYSRLMKMGFEIKRIPNEAAVKM-SKN 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A HQG   E             N   ++VL  + D  NIGAI+RSA A   D II +   
Sbjct: 59  ANHQGFLAEVEDYKLHDYQTFLNKDFVVVLAGLTDVGNIGAIVRSAYALGVDAIIVSGIK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   +L ++++GAL  +P    +N+ + L      GF + G         E +I   +
Sbjct: 119 HLNIEPLL-RTSTGALFDMPLAVENNIHNLLNDFKMSGFISYGADMGGVDIREAKIVKKR 177

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + L+LG EG+GL  +      ++  + M     +LNVS A A+ +
Sbjct: 178 V-LVLGNEGEGLTSRVSSKLDNIVSIKMAHDFDSLNVSVAGAILM 221


>gi|306837891|ref|ZP_07470751.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
 gi|306406979|gb|EFM63198.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
          Length = 228

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 71  LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125
           LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+   ++ P L   
Sbjct: 16  LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 74

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L A+    L++VL  +++  N+G+I R+A AF  D ++  +           + + GA  
Sbjct: 75  LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 134

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG+GL  +  
Sbjct: 135 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 194

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E   + A + M     +LNV+ A+ +AL
Sbjct: 195 ERLKT-ARIPMSTTFDSLNVATASGIAL 221


>gi|228471324|ref|ZP_04056127.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
           60-3]
 gi|228306901|gb|EEK16009.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
           60-3]
          Length = 247

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 13/235 (5%)

Query: 50  FLYGVHTVSAALNNPSR--KIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H ++ +L + S   KI+ +  A    L  +   A      PV  VP + +++   
Sbjct: 6   LIYGIHALTESLASHSDIDKIYMKKGAATGELLEIKRTAR-AQGIPVMEVPAERLNRF-- 62

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+    +P+       L P L        +++LD V D  N GAI R+      
Sbjct: 63  TRGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+  +R S S +A    +++GAL  IP  R  +L  A + +   G Q +G   D+   
Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDATTN 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + +++G+E KG+     +  T    +   G I +LNVS A  + LY
Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLY 237


>gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162]
          Length = 258

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 69/141 (48%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LLMVL+ + DP N G I+R+       G+  TK      +  + ++  G++  IP+  + 
Sbjct: 110 LLMVLEDLQDPGNAGTIIRTGEGAGIGGVFLTKTCVDITNPKVIRATMGSIYRIPFFYVE 169

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++    QK+ + G +        K   ++E   +  A ++G EGKGL  +  + A  +  
Sbjct: 170 DVVLLKQKLQNCGIRFFAAHLQGKNAYDRESYQEGTAFLIGNEGKGLTDRAADAADCLIR 229

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + A  + +Y
Sbjct: 230 IPMCGHVESLNAAMAGGILMY 250


>gi|332299037|ref|YP_004440959.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           brennaborense DSM 12168]
 gi|332182140|gb|AEE17828.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           brennaborense DSM 12168]
          Length = 262

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 32/210 (15%)

Query: 91  FPVKTVPPQTIDKIVGKEAV----HQGLALETAPLLSPTLDAV--------------RNS 132
            P K      +DK+    +V    H+G+ L  +     TL+ +                 
Sbjct: 52  IPCKKTESGELDKLTASLSVTAREHRGVVLRVSGAAEETLNRIDFDGYVASVSAPGAAER 111

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--------SAVLAKSASGAL 184
           Q ++VLD V DPHNIGAILR     SCD +  +    P          S V++++++GA 
Sbjct: 112 QTVVVLDSVTDPHNIGAILR-----SCDQLGVSLAVLPERRGVKNVDGSEVISRASAGAS 166

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P    SNL  A+ ++ + GF   G  S    P+       +  LI+G+EG G+    
Sbjct: 167 AWVPISIASNLVRAVGQLKAAGFWIYGADSGG-TPVTDVDFPPRTVLIMGSEGSGISRLL 225

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E    +  +   G + +LNVS AA + LY
Sbjct: 226 AEQCDRIVSIPTCGKLDSLNVSVAAGILLY 255


>gi|296129890|ref|YP_003637140.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296021705|gb|ADG74941.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 279

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 3/143 (2%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI    D
Sbjct: 136 LEDLVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRAVRVSMGTVFQVPWTRIDPWPD 195

Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHL 254
            +  +   GF T  L+ S+   PL++ + +  +++AL+LGAEG GL+P+T         +
Sbjct: 196 GIATLRQAGFVTASLALSEDSVPLDELVADPPERLALVLGAEGDGLKPETVAAGDLTVRI 255

Query: 255 HMPGIIKALNVSNAAAVALYITQ 277
            M G + +LNV+ AAAVA + T+
Sbjct: 256 PMAGGVDSLNVAAAAAVAFWATR 278


>gi|222099913|ref|YP_002534481.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
           DSM 4359]
 gi|221572303|gb|ACM23115.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
           DSM 4359]
          Length = 216

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 4/167 (2%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           HQG+  +       +++ +  S+   L+++LD + DPHN+GAI+R++V    +GII  K 
Sbjct: 39  HQGVVFDIQEYRYSSVEEILESKTPPLIVILDQIQDPHNLGAIVRTSVGAGANGIIIPKD 98

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  + K ++G +       ++NL   ++++   G      S  +  P+ +E    
Sbjct: 99  KSVKVTETVVKVSAGTVFRAKIAIVTNLARTIEELKERGVWVYA-SDVNGTPIYEEDFTL 157

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A + G EG+G+R   +E    +  + M   I +LNVS +  + L+
Sbjct: 158 PTAFVFGNEGEGIRRLVKEKCDRVLTIPMENDIDSLNVSVSVGIVLF 204


>gi|295394712|ref|ZP_06804928.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972445|gb|EFG48304.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 293

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 3/180 (1%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H  P+       ++K+ G       LA    P L    + VR++ ++++++ + D  N+G
Sbjct: 97  HDVPIYVGSEADLEKVAGFRLHRGALASTQRPHLPSVAEVVRDTSVVVIIEDLVDHTNVG 156

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RS  A   D ++ T R +        + + G +  +P+ RI    +++      GF 
Sbjct: 157 AIFRSVAALGADAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPESIDTFQDAGFV 216

Query: 209 TIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             G++  +    L++ +  D  K+AL+ G+EG GL   T++       + M G + +LNV
Sbjct: 217 VAGMTLGEGAITLDELVAEDYEKLALVFGSEGPGLTQATEQRLDRRVTIPMMGGVDSLNV 276


>gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
 gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
          Length = 254

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            + +  M   GF   G   ++    L++  K +  A+I+G EG+G+  +   +A    ++
Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSSADQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
          Length = 259

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 14/214 (6%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDA 128
           L  T++AL +    + LP    +  V     DK+      HQG+        +P  TL+ 
Sbjct: 51  LFCTESALEKCPELSELPGEHYL--VEDHVADKLA-DVGTHQGV---FGVFRTPVHTLEE 104

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V+     + L+ V DP N+G +LRSA AF  DG++ +   +   +    +++ GA   IP
Sbjct: 105 VKTGGRYLALERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE 246
            I    + +A+  +   G   +  +    +PL     +  D + +++G+EG+GL  +T  
Sbjct: 165 VIEAGKMPEAIALLREKGITCLAAALYQSQPLSAAASSYPDGVCVVIGSEGQGLTDETIA 224

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             T    + M   +++LN   A ++ L+    HF
Sbjct: 225 ACTGTVRIPMTDRVESLNAGIAGSILLW----HF 254


>gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 263

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            APLL+      +   L++VLD V DP N+G I+RSA A + DG+I     +      + 
Sbjct: 105 VAPLLA------KERSLVVVLDGVQDPGNVGTIIRSADAVAADGVIVGAGCADIYGPKVL 158

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++  G+L H+P +  ++L + L +    G +  G S  +            + L+ G+EG
Sbjct: 159 RATMGSLFHLPVVH-ADLAEVLPQAKQRGIRLAGTSLQAAANCFAYDFTQPVWLLFGSEG 217

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL P  +E       + M G  ++LNV+ AA+V LY
Sbjct: 218 GGLSPAVRELMDDGLLIPMRGQAESLNVAMAASVLLY 254


>gi|183221112|ref|YP_001839108.1| TrmH family tRNA/rRNA methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167779534|gb|ABZ97832.1| Putative tRNA/rRNA methyltransferase, trmH family [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 233

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 101/201 (50%), Gaps = 16/201 (7%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVR-----NSQLLM 136
           A LP+     TV  + +D+I  ++  HQG  +   +    LS   +  +     N   ++
Sbjct: 29  AYLPNSVKFTTVSARELDRI-AQDKNHQGYVIIRTKQKSYLSLGFEQFKQNIKPNEGPVL 87

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195
           +LD + DP N+G +LR+A       ++ + R +   + V+ K ++GA+ HI   R++NL 
Sbjct: 88  ILDRIQDPGNLGNLLRTAECMGVKHVLMSDRDTSPITPVVEKVSAGAIHHIQIYRVANLK 147

Query: 196 --TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA 252
              D L+K   W   T     + ++ + + + +  ++A+I+G EG+G++    E A  +A
Sbjct: 148 HGIDFLKKNEYWILAT---DEEGEEGIWETLPDVSQMAVIMGNEGEGVKRILLEDADYVA 204

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
            + + G + +LNV  A  + L
Sbjct: 205 RIPLYGAVTSLNVVVACGITL 225


>gi|310287371|ref|YP_003938629.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|309251307|gb|ADO53055.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
          Length = 292

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 22/206 (10%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            PV    P+ + ++ G   +H+G   A+   PL S   +  R+++ + V++++ D  N+G
Sbjct: 82  IPVYVASPEQLRQLTGYR-LHRGALSAMRRWPLPS-VEETCRDARRVAVMENIVDHTNVG 139

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKM 202
           A++RSA A   D ++ T           A+ + G +  IP+ RI            L+++
Sbjct: 140 ALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHFWPRRGLEEL 199

Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATS 250
            S GF T+ ++ SD    L++  +             K+ALI G EG GL   T   A  
Sbjct: 200 RSLGFTTVAMALSDDSISLDELTRRLNNSPESADHIGKLALIFGTEGDGLSRHTIAGADL 259

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M   + +LNV+ ++AVA Y T
Sbjct: 260 TVKIPMSHGVDSLNVAASSAVAFYAT 285


>gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 235

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 14/173 (8%)

Query: 111 HQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+    +P+   + +      +      +VLD V +P N+GAI R+  +F   GI+  
Sbjct: 64  HQGIVAILSPIEYISCEKLFKSTIEKESFFVVLDRVTEPQNLGAIARTVESFGGVGILLP 123

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           ++ S   + +  K++SGAL H+   R+ +L ++L       F+ +G S  + +   ++I+
Sbjct: 124 EKNSAPINEIALKASSGALFHLMVSRVPSLNESLIT-----FKKLGGSIYAVETGGKDIR 178

Query: 226 N----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           N      + LILG+EGKG+     + +  +  +   G   +LNVS AA +A++
Sbjct: 179 NINFQKPLGLILGSEGKGIEKNLLKLSNEIVSIPTVGKTPSLNVSVAAGIAIW 231


>gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
           15053]
 gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
           15053]
          Length = 263

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD++ DP N+G ++R+A      GI+ +       +    +S  G++  +P  R  +
Sbjct: 115 ILVLDNLQDPGNMGTVIRTAEGAGVTGIVMSSECVDVYNPKTIRSTMGSVYRMPLYRAKD 174

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           LT+A+++M   G  T     D     ++       A  +G EG GLR +    A +   +
Sbjct: 175 LTEAVRRMKESGIHTYAAHLDGVLSYDEADLTKPCAFFIGNEGSGLREEVAALADTYIRI 234

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + AAAV ++
Sbjct: 235 PMEGEVESLNAATAAAVLMF 254


>gi|159185217|ref|NP_355393.2| RNA methylase [Agrobacterium tumefaciens str. C58]
 gi|159140480|gb|AAK88178.2| RNA methylase [Agrobacterium tumefaciens str. C58]
          Length = 232

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 7/209 (3%)

Query: 71  LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-- 127
           +L  +N L+ + D  A+ P   PV       +D IVG   +H+G+      +    L+  
Sbjct: 17  ILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFH-LHRGILALGRRVRDDGLEQM 75

Query: 128 --AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             A+  S L++V   +++  N+GA+ R+A AF  D ++  +           + + G++ 
Sbjct: 76  TAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGSVL 135

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY R     + L+++   GF   GLS D K  +    +++++AL++G EG+GL P++ 
Sbjct: 136 SVPYHRGGGAVEMLERLSEEGFAIWGLSPDGKTEIRDIPRSERMALVIGTEGEGL-PQSV 194

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +    A +     + +LN   A+ +ALY
Sbjct: 195 LSRFQTARIAQSPQVDSLNAGTASGLALY 223


>gi|47213835|emb|CAG00639.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 364

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 134/272 (49%), Gaps = 32/272 (11%)

Query: 31  KKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLL------ATKNALARLDW 83
           +K Q   QK++  S+ ++   ++G+     AL+   RK F+L       A + ++ ++  
Sbjct: 90  EKWQQLRQKTKVDSRSDSHEIVFGIAPCLLALSQGRRKAFKLFVKDGEAAERASVLKVCE 149

Query: 84  DANLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETAPL--LSPTLDAVRNSQ------L 134
           +A+      +  V    +DK+ +G+  VHQG+ L+ + L  L+ T    R S+      L
Sbjct: 150 EAH-SRGVQICHVRKNDLDKMSLGR--VHQGVCLQASRLDFLTKTTCNSRGSKDSNRPPL 206

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VL+ + DP N+GAILRSA     D + ++   S   S V++K++SG +E +      +
Sbjct: 207 WLVLEEIQDPMNLGAILRSAYFLGVDRVASSVHRSCPLSPVVSKASSGVMEVMEVYGYES 266

Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQET 247
           L D L+   + G+Q +G + ++++      I+           L++G EG+GL       
Sbjct: 267 LEDMLRMKVAQGWQVVGSVGTEAEATHIPIIRCSDFHLTKPTLLLMGGEGEGLSRGLLSL 326

Query: 248 ATSMAHL-----HMPGIIKALNVSNAAAVALY 274
             ++  +       PG I++LNVS AA + L+
Sbjct: 327 CQALLSIPAGRNLFPG-IESLNVSVAAGIILH 357


>gi|323307222|gb|EGA60505.1| Mrm1p [Saccharomyces cerevisiae FostersO]
          Length = 295

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 117/290 (40%), Gaps = 75/290 (25%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDK-- 103
           ++YG ++V AAL NPSR         N  +RL +   +P           V  + +DK  
Sbjct: 9   YVYGTNSVYAALLNPSR---------NCHSRLLYHGTIPSKILQXVDEMKVTTELVDKHR 59

Query: 104 --IVGKEAVHQGLALETAPL-----------------LS-----------------PTLD 127
             ++    VH  +ALET PL                 LS                  T  
Sbjct: 60  LNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKT 119

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +   L + LD + DPHNIGAI+RSA     D I+ ++R     + V++K++SGALE +
Sbjct: 120 DAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELL 179

Query: 188 PYIRISNLTDAL---QKMHSWGFQTIGLSSDSKK-----------PLEQEIKNDKIALIL 233
           P   +    +     Q+M  W F T  L++ + +            L        + L++
Sbjct: 180 PIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVV 239

Query: 234 GAEGKGLRPKTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273
           G E +G+R   +  +     +   G          I+ +LNVS A A+ +
Sbjct: 240 GNESQGVRTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 289


>gi|254708588|ref|ZP_05170416.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis
           M163/99/10]
 gi|261316094|ref|ZP_05955291.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261305120|gb|EEY08617.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
          Length = 265

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 127/274 (46%), Gaps = 14/274 (5%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R  ++ + + L  + + SA 
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58

Query: 61  LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116
               S     LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+  
Sbjct: 59  FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +         
Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG 
Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           EG+GL  +  E   + A + M     +LNV+ A+
Sbjct: 233 EGEGLPSRLLERLET-ARIPMSKTFDSLNVATAS 265


>gi|291546244|emb|CBL19352.1| rRNA methylases [Ruminococcus sp. SR1/5]
          Length = 274

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 11/192 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T     + ++ G +     L     P L   +D  +N++ + VL++V +P NIGAI 
Sbjct: 80  PVYTAEFDVLTQLTGFKLTRGMLCAMRRPALPDIVDVCKNARRIAVLENVVNPTNIGAIF 139

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSWGF 207
           RSA A   D ++ T   S        + + G +  IP+     +    T+ ++ + + GF
Sbjct: 140 RSAAALGMDAVLLTPGCSNPLYRRAIRVSMGTVFQIPWTFFDEKTEWKTEGIRSLKAMGF 199

Query: 208 QTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           +T  +     S D   P    +  +K+A++LG EG GL  +T         + M   + +
Sbjct: 200 KTAAMALREDSFDIDDP--HLMAEEKLAVVLGTEGDGLASETIADCDYTVCIPMAHGVDS 257

Query: 263 LNVSNAAAVALY 274
           LNV+ A+AVA +
Sbjct: 258 LNVAAASAVAFW 269


>gi|66817954|ref|XP_642670.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
 gi|74876335|sp|Q76NT0|MRM1_DICDI RecName: Full=Mitochondrial rRNA methyltransferase; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase
 gi|60470728|gb|EAL68702.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
          Length = 531

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 38/220 (17%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------------------------ 127
           PV++V   T+D    K   HQG+ L+ +PL    +D                        
Sbjct: 303 PVRSVNKGTLDSF-SKGRPHQGIILDASPLTLLNIDFLEKFDINERVNKRMNGGGGGGGG 361

Query: 128 ----AVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                + N +  L +VLD + DP N+GAI+R+   F+ DG++ + + S   +   +KS+S
Sbjct: 362 GGGNKINNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSS 421

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS---KKPLE--QEIKNDK-IALILGA 235
           GA E     R  ++   L+     G+  +G S D     +P     +IK D+   LILG 
Sbjct: 422 GACESFVINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTILILGN 481

Query: 236 EGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALY 274
           EG GL+P   E       +      I +LNVS  + + ++
Sbjct: 482 EGFGLKPSVLEICNKTIKIVGGNYKIDSLNVSVTSGILIH 521


>gi|160913562|ref|ZP_02076253.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
 gi|158434114|gb|EDP12403.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
          Length = 244

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 3/149 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +D V   ++++ LD V DP N+G ILRSA +F  D ++ +K  +   S  + +S  GAL 
Sbjct: 95  MDFVMGEKVIL-LDDVQDPGNVGTILRSAYSFGFDTVVLSKHCADVYSDKVIRSTQGALF 153

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+  IR ++L+  + ++       IG + ++   +      D++AL+ G EG G+  +  
Sbjct: 154 HMQVIR-TDLSQIIDQLKEKKIPVIGTALENASAMSTIEAVDRVALLFGNEGNGVSKELL 212

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  ++ M    ++LNV+ AA +A+Y
Sbjct: 213 AKCDETMYIEMHA-FESLNVAVAAGIAMY 240


>gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
 gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
          Length = 247

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 17/156 (10%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-----AKSA 180
           LD  + ++LL+ LD + DP N+G ++R+A++F  DG+     Y  +E+  L      +S 
Sbjct: 96  LDITKQNRLLL-LDGIQDPGNLGTLIRTAISFGFDGV-----YCSTETCDLYNDKAIRST 149

Query: 181 SGALEHIPYIR--ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            GAL HIP +R   S L  ALQ   S G + I  S      + +    + +A ++G EG+
Sbjct: 150 QGALFHIPVVRKDFSTLIPALQ---SQGVKVIATSLQESTTMGEIPVTECMAFVMGNEGQ 206

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+       A     + M G  ++LNV+ A  + +Y
Sbjct: 207 GVHQDIIAQADFRVRIEMEG-FESLNVAVAGGIIMY 241


>gi|306843065|ref|ZP_07475688.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
 gi|306286744|gb|EFM58294.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
          Length = 203

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 94/192 (48%), Gaps = 6/192 (3%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPTLDAVRNSQLLMVLDHV 141
            LP   PV +VP   +D + G   VH+G LA+   ++ P L   L A+    L++VL  +
Sbjct: 7   QLPLGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGI 65

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++  N+G+I R+A AF  D ++  +           + + GA   +PY     + D    
Sbjct: 66  SNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAA 125

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF  + L+  + + + +    ++ AL+LG EG+GL  +  E   + A + M     
Sbjct: 126 LAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLLERLET-ARIPMSKTFD 184

Query: 262 ALNVSNAAAVAL 273
           +LNV+ A+ +AL
Sbjct: 185 SLNVATASGIAL 196


>gi|282890318|ref|ZP_06298846.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499700|gb|EFB41991.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 254

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 92/174 (52%), Gaps = 6/174 (3%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +DKI G +     LA    P  SP    ++N + L+VL+ +NDP N+G ++RSA+AF  +
Sbjct: 83  LDKISGMQHSPGVLAEVKMPSPSP----LKNIRSLLVLNQINDPGNLGTLIRSALAFGWE 138

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI    +     +    +SA GA   +PY R  +L + L+++ +    T  ++  S  P+
Sbjct: 139 GIFIVNQSCDIFNEKAIRSARGATFRLPY-RKGDLQE-LEEILTHNKLTTWVADVSGTPM 196

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     +K+AL+L  E +G+   T    +    + M G +++LNV+ A A+ L+
Sbjct: 197 QDITPPEKVALVLSNEARGVSSSTHPLFSQHVTIPMSGKMESLNVAVAGAILLH 250


>gi|291535725|emb|CBL08837.1| rRNA methylases [Roseburia intestinalis M50/1]
          Length = 294

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 15/197 (7%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H  PV     + + KI G +     L     P L       +N++ + +L++V +P N+G
Sbjct: 96  HVIPVYVAEVEVLAKITGYQLTRGMLCAMYRPTLPSVEQLCKNARRVAILENVVNPTNVG 155

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSAS----GALEHIPYIRISNLT----DALQ 200
           AI RSA A   D ++ T    P+ +  L + AS    G +  IP+            A+ 
Sbjct: 156 AIFRSAAALGMDAVLLT----PACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGAMD 211

Query: 201 KMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +H  G++T  ++  D    ++ E  +  +K+A++LG EG GL   T         + M 
Sbjct: 212 VLHKLGYKTAAMALRDDSVSIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMT 271

Query: 258 GIIKALNVSNAAAVALY 274
             + +LNV+ A+AVA +
Sbjct: 272 HGVDSLNVAAASAVAFW 288


>gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 248

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 15/195 (7%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPH 145
           P + VP + + K+ G   +H G+     P      +AV++       + L++LD + +PH
Sbjct: 52  PFRHVPTEELTKVAGTP-LHGGIVAVCQPKGLTPFEAVKSFNWAKAKEPLVILDGIGNPH 110

Query: 146 NIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           N+GAI R+   F    +I +   ++  PS++A   + A G LE +   +++NL  AL ++
Sbjct: 111 NLGAIARTMAFFGLGRLIVSDHPEQALPSDAAF--RIAEGGLEWVDVYQVANLGKALPRL 168

Query: 203 HSWGFQTIGLSSDSKKPLEQEI-KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               +Q IG +  + + ++     NDK +AL+LG E +GL   T      +  +   G +
Sbjct: 169 KPH-YQVIGTALGAHRSMKDTFSSNDKPLALVLGNEEEGLPATTLAACDDIVTIPGSGRV 227

Query: 261 KALNVSNAAAVALYI 275
           ++LNVS  AA+ +++
Sbjct: 228 QSLNVSATAAILIHL 242


>gi|308063657|gb|ADO05544.1| RNA methyltransferase [Helicobacter pylori Sat464]
          Length = 227

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   +   LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   IYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+  +    L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I     
Sbjct: 61  GNHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAK 120

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  +   K
Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLKK 178

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 179 CALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
          Length = 242

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 76/141 (53%), Gaps = 4/141 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD V DP N+G ILRSA+AF    I+ +       +    +S  GA+ H+  +R  +
Sbjct: 98  VLILDGVQDPGNLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFHLDIVR-DD 156

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   + ++   G + I  S  +   ++     DK+A ++G EG G+R +T   A S A L
Sbjct: 157 LHHVIPELQKLGVRVIATSLHNASSIDDIKSTDKMAFVMGNEGNGVRDET--IAMSDASL 214

Query: 255 HMP-GIIKALNVSNAAAVALY 274
           ++P   +++LNV  AA + +Y
Sbjct: 215 YIPIDTMESLNVGVAAGIVMY 235


>gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268]
 gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268]
          Length = 260

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++L+++ DP N+G + R+A A   + I  ++      S  + +S  G+L  +P+    
Sbjct: 107 LFLILENIQDPGNLGTLFRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSLFRLPFSIEE 166

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L    + + S G Q   L  D KK   Q       A + G EG GL  +  + AT    
Sbjct: 167 DLFFLCESLKSAGVQVFALDLDGKKTHFQAAFQGPSAFLFGNEGNGLTKELSQCATEKLL 226

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFAK 282
           + M G I++LNV+ +A++ LY  + Q  + K
Sbjct: 227 IPMEGKIESLNVATSASIVLYEAVRQRRYIK 257


>gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 308

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 15/192 (7%)

Query: 99  QTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +T+ ++ G + +H+GL  A   AP LS + + ++ +  ++VL+ V D  NIG+I R+A  
Sbjct: 111 ETLAQVAGYD-MHRGLLAAANRAPELSLS-EVIKTATTVVVLEGVGDHENIGSIFRNAAG 168

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKMHSWGFQTIGL 212
              D I+     +        + + G +  +P+       +N    L ++   GFQ + L
Sbjct: 169 LGVDAILFGNGCADPLYRRSVRVSMGHVLRLPHASFEGKHTNWHYGLDQLKESGFQLVSL 228

Query: 213 SS-DSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           +  +   PL+Q + +      +KIAL++GAEG GL  +T       A + M     +LNV
Sbjct: 229 TPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTERTMRRTDIRARIPMSAGTDSLNV 288

Query: 266 SNAAAVALYITQ 277
           + AAA+ALY  Q
Sbjct: 289 ATAAAIALYERQ 300


>gi|331703507|ref|YP_004400194.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802062|emb|CBW54216.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 255

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 36/279 (12%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +S  K ++I  LKD       R HR+ +K+                 + G H +  A N+
Sbjct: 7   VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             + I  LL T  AL  L  +  +P+   V  +      KI       Q  A+ + P  +
Sbjct: 45  --QIIKTLLGTSKALEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S  G 
Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239
           L  +  +    L   + ++H   +  IG S  D  KPL + +K   +DK ALI+G EGKG
Sbjct: 157 LFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKPLSK-VKFDSDDKYALIIGNEGKG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 215 ISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253


>gi|302390627|ref|YP_003826448.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
 gi|302201255|gb|ADL08825.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
          Length = 252

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T +  R +  + VL+ + DP N+G+ILR+A      G+I  KR +   +  + K + GA 
Sbjct: 93  TAERRREAPFVFVLNEITDPQNLGSILRTADCLGVHGVIIPKRRACGVTPAVVKVSEGAA 152

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            ++   R++N+   L+ +   G   +G   D  +P  +      +AL++G E KGL    
Sbjct: 153 GYVNVARVTNIASTLECLKEKGLWVVGADMDG-EPYHRVDLTGPVALVIGGEDKGLGRLV 211

Query: 245 QETATSMAHLHMPGIIKALN 264
           +E    +  L M G + +LN
Sbjct: 212 REKCDLLVKLPMRGHVPSLN 231


>gi|291559697|emb|CBL38497.1| rRNA methylases [butyrate-producing bacterium SSC/2]
          Length = 273

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 102/193 (52%), Gaps = 12/193 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNI 147
            PV T     + ++ G   + +G+  A+   PL  P L+ + + ++ +++L++V +P N+
Sbjct: 78  IPVYTASFDVLKQLTGF-GLTRGMLCAMRRKPL--PALETICDHAKRIVILENVMNPTNV 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHS 204
           GAI RSA A + D I+ +K  S        + + G +  IP+  + + T   D + ++  
Sbjct: 135 GAIFRSAAALNMDAILLSKGCSDPLYRRSVRVSMGTVFQIPWTFLGDDTWPADGMHRLKE 194

Query: 205 WGFQTIGLSSDSKK-PLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            G++ + ++  ++   ++ E  +  DK+A+ILG EG GL  +T +       + M   + 
Sbjct: 195 LGYKNVAMALTARSVSIDDEALMSEDKLAIILGTEGDGLCQETIDACDYTVKIPMAHGVD 254

Query: 262 ALNVSNAAAVALY 274
           +LNV+ A+AVA +
Sbjct: 255 SLNVAAASAVAFW 267


>gi|284931714|gb|ADC31652.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           F]
          Length = 260

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 117/251 (46%), Gaps = 18/251 (7%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPF-PV 93
           FN K ++  + E L L+G + V   L NN   K   L    + L +L     + +    +
Sbjct: 9   FNNKHQNKHKKERLCLFGYNAVYEGLINNLKIKKVYLHKEDHLLLKLIKQKGIEYELHTI 68

Query: 94  KTVPPQTIDKIVGKEAVHQGLALET-----APLLSPTLDAVRNSQ--LLMVLDHVNDPHN 146
           K    Q  D      + HQG   E          +   + ++N Q  +++VLD ++DP N
Sbjct: 69  KWFDNQYRDL-----SNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-W 205
            G ILRS +A +  G+I  K    S +  + K++ GA  ++  I ++NL+ A++ +   +
Sbjct: 124 FGGILRSCLAANVLGVIFKKDNQASINNTVIKTSLGACFYLNLIEVANLSYAIKDLQDKY 183

Query: 206 GFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKAL 263
           GF + +   SD  +    +  N  I LI+G E KG+  +  + A     + M    I++L
Sbjct: 184 GFWSYVSNLSDQAQDYNVDYANKSI-LIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSL 242

Query: 264 NVSNAAAVALY 274
           NVS A  + L+
Sbjct: 243 NVSVATGIMLF 253


>gi|116328523|ref|YP_798243.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331251|ref|YP_800969.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121267|gb|ABJ79310.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124940|gb|ABJ76211.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 253

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 10/195 (5%)

Query: 87  LPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLL-------MVL 138
           LP    V  +    +D +V G+   HQG+    +P      D     + L       +VL
Sbjct: 54  LPSFVKVHRISGSKLDSLVPGRN--HQGVVALKSPFRQQISDKKNLEEYLSEKPGTFLVL 111

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+G ILR+A  F    II  +R S   + V+ K +SGAL  +    + NL + 
Sbjct: 112 DRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVSSGALSFLKIFTVKNLANT 171

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+ +   G+  +  S    +   +  +  ++A+++G EG+G++    E +  +  + + G
Sbjct: 172 LELLKENGYWIVSTSDRGTENWSKLPELKELAILMGNEGEGVKRILLEKSDFVLRIPIHG 231

Query: 259 IIKALNVSNAAAVAL 273
            + +LNV+ A  + L
Sbjct: 232 NLSSLNVTVATGIVL 246


>gi|42524391|ref|NP_969771.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39576600|emb|CAE80764.1| RNA methyltransferase, TrmH family, group [Bdellovibrio
           bacteriovorus HD100]
          Length = 297

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 65/124 (52%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +  ++++LD + DPHN+GAILR++      G++  +  +   +  + K A G +EH+P  
Sbjct: 139 DKSMVLILDGIEDPHNLGAILRTSWLVGAQGVLIPEDRAVGLTPTVHKVACGGVEHVPVE 198

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +N  +  +++   G+   GLS   K+ + +    DK+   +G+E KG+R  T+     
Sbjct: 199 ETTNFANYAEELKKQGYWIYGLSPRGKRSIFELELPDKVVWAIGSEDKGMRVTTERLCDE 258

Query: 251 MAHL 254
           +  +
Sbjct: 259 LVFI 262


>gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 278

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 3/157 (1%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           APL  P  D + +++ + VL+ VND  N+G++ R+A     D ++  K  +        +
Sbjct: 117 APLELP--DVLEHTRTVAVLEGVNDHENLGSMFRNAAGLGVDAVVFGKGCADPLYRRAVR 174

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEG 237
            + G +  +P+  ++     L  +   GFQ I L+ + +   L + +  +K+AL+LGAEG
Sbjct: 175 VSMGHVLRVPFAHVTKWPHDLDALRERGFQLISLTPNPEAVTLAEAMTGEKVALLLGAEG 234

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL           A + M     +LNV+ AAA+A Y
Sbjct: 235 PGLTEHAMRATDIRARIPMAPGTDSLNVATAAAMAFY 271


>gi|313665349|ref|YP_004047220.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
 gi|312949359|gb|ADR23955.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
          Length = 255

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 36/279 (12%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +S  K ++I  LKD       R HR+ +K+                 + G H +  A N+
Sbjct: 7   VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             + I  LL T  AL  L  +  +P+   V  +      KI       Q  A+ + P  +
Sbjct: 45  --QIIKTLLGTSKALEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S  G 
Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239
           L  +  +    L   + ++H   +  IG S  D  KPL + +K   +DK ALI+G EGKG
Sbjct: 157 LFQVNLVN-EYLVKVINQLHDNNYIIIGTSLHDDSKPLSK-VKFDSDDKYALIIGNEGKG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 215 ISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253


>gi|260547003|ref|ZP_05822742.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260096053|gb|EEW79930.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
          Length = 242

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 71  LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125
           LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+   ++ P L   
Sbjct: 30  LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 88

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L A+    L++VL  +++  N+G+I R+A AF  D ++  +           + + GA  
Sbjct: 89  LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 148

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG+GL  +  
Sbjct: 149 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 208

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E   + A + M     +LNV+ A+ +AL
Sbjct: 209 ERLET-ARIPMSKTFDSLNVATASDIAL 235


>gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
 gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a04]
 gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133C]
 gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133A]
 gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133B]
 gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a01]
 gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
 gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a01]
 gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133B]
 gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133A]
 gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133C]
 gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a04]
          Length = 254

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +  M   GF   G   ++    L++  K +  A+I+G EG+G+  +         ++
Sbjct: 171 ADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|189024698|ref|YP_001935466.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|189020270|gb|ACD72992.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
          Length = 228

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 71  LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125
           LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+   ++ P L   
Sbjct: 16  LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDM 74

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L A+    L++VL  +++  N+G+I R+A AF  D ++  +           + + GA  
Sbjct: 75  LAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAAL 134

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG+GL  +  
Sbjct: 135 KVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLL 194

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E   + A + M     +LNV+ A+ +AL
Sbjct: 195 ERLET-ARIPMSKTFDSLNVATASDIAL 221


>gi|157371980|ref|YP_001479969.1| putative methyltransferase [Serratia proteamaculans 568]
 gi|157323744|gb|ABV42841.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568]
          Length = 366

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 13/173 (7%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            QGL  +T    +P  D V      + L+ V +PHN+GAI+RS   F  +G++      P
Sbjct: 202 RQGLDAQTYLKEAPAKDCV------LALEEVGNPHNLGAIVRSCAHFGVNGVLLQ---DP 252

Query: 171 S--ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +  ES    ++A G  EHI  I   +    L      G+  +  SS    PL Q     K
Sbjct: 253 AVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYAIVTTSSHKGTPLAQAKLPAK 312

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           + L+LG E  GL     +       +   G +++LNVS A  + L  +  QN 
Sbjct: 313 MVLVLGQERDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLADWWRQNQ 365


>gi|258614352|ref|ZP_05712122.1| RNA methyltransferase [Enterococcus faecium DO]
          Length = 254

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +  M   GF   G   ++    L++  K +  A+I+G EG+G+  +         ++
Sbjct: 171 ADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|256384063|gb|ACU78633.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384895|gb|ACU79464.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455884|gb|ADH22119.1| rRNA methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 255

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 36/279 (12%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +S  K ++I  LKD       R HR+ +K+                 + G H +  A N+
Sbjct: 7   VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             + I  LL T  AL  L  +  +P+   V  +      KI       Q  A+ + P  +
Sbjct: 45  --QIIKTLLGTSKALEILKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S  G 
Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239
           L  +  +    L   + ++H   +  IG S  D  KPL + +K   +DK ALI+G EGKG
Sbjct: 157 LFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKPLSK-VKFDSDDKYALIIGNEGKG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 215 ISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253


>gi|194467106|ref|ZP_03073093.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
 gi|194454142|gb|EDX43039.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
          Length = 290

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L+ V +P NIGAI RSA A   DG+I T   +       ++ A G +  +P+  +  
Sbjct: 137 IAILESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDA 196

Query: 195 ---LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               ++ +  +H +G++T  +     + D   P  Q  + D++A+ILG+EG GLR +T  
Sbjct: 197 KAWRSEGIDLLHRFGYKTAAMALRHNTVDIDDP--QLAEADRLAIILGSEGPGLREETIT 254

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +     + M   + +LNV+ A+A+A +   N   K
Sbjct: 255 QSDFTIKIPMAAGVDSLNVAAASALAFWELGNRKVK 290


>gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 214

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 17/195 (8%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDA---VRNSQLLMVLDHVNDP 144
           P +  P + + KI+G   +H G+   T P    +  P  DA    +  + L+VLD V +P
Sbjct: 18  PYRMAPTEELTKILGSP-LHGGILAVTRPKPIRVFDPA-DAHVWAKEGRPLLVLDGVGNP 75

Query: 145 HNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           HN+GAI R+   F  + ++ +    + SPSE+++  + + G LE +  IR      AL++
Sbjct: 76  HNLGAIARTMAFFGLERLLISDHPGQASPSEASL--RVSEGGLEWVEVIRAQKFVAALKR 133

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +     + +G +  S KP+ + +      IALILG E  GL   T      +  L   G 
Sbjct: 134 LRD-SHRIVGTALGSGKPVAEVLNRPGKPIALILGNEEDGLPTATLAACDDIVTLPGSGR 192

Query: 260 IKALNVSNAAAVALY 274
           +++LNV+  AA+ ++
Sbjct: 193 VQSLNVAATAAILIH 207


>gi|308184337|ref|YP_003928470.1| RNA methyltransferase [Helicobacter pylori SJM180]
 gi|308060257|gb|ADO02153.1| RNA methyltransferase [Helicobacter pylori SJM180]
          Length = 227

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 18/230 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YG   V   LN+   K+ ++  +K      + D  L   F +K   P  I K+  K+A 
Sbjct: 5   IYGKQVVMHILNSHKEKLQEIYLSK------EIDKKLF--FALKKACPNII-KVDNKKAQ 55

Query: 111 -------HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                  HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I
Sbjct: 56  SLARGGNHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI 115

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                  +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S       E  
Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAEN- 173

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 256

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 74/153 (48%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D ++   L ++LD V DP N+G I+RSA AF+ D + T        +    +S  G++ H
Sbjct: 100 DLIKEDGLYIILDEVQDPGNLGTIIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFH 159

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P +    +    + +   G + +  +  ++K +     +  IALI G E +G+      
Sbjct: 160 LPVVNDVPVDKLFEALKRNGVRVLSTNLKAEKYIYDCDISKNIALIFGNESRGVNKSLDI 219

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + M G+ ++LNVS AA++ LY +Q  
Sbjct: 220 YVDGSFKIPMDGMAESLNVSVAASICLYESQRQ 252


>gi|261838205|gb|ACX97971.1| 23S rRNA methyltransferase [Helicobacter pylori 51]
          Length = 227

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   V   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVVMRILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I 
Sbjct: 57  LAKGGNHQGVLAKVELPLAVSLKEIKKAQKLLVLCAITDVGNIGGIFRSAYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  +
Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|256384318|gb|ACU78888.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256385151|gb|ACU79720.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455808|gb|ADH22043.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 244

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 115/253 (45%), Gaps = 35/253 (13%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVK-------TVPPQT 100
            +YG H V           F+LL     + +  W  D  + + F +K        V    
Sbjct: 5   LIYGKHVV-----------FELLKKHQNMVKEIWVKDLKILNEFDLKNTKIKVNVVSENK 53

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSA 154
           +D+++  +  HQG+  +         + + N        L+++LD ++DP+N GAI+RS 
Sbjct: 54  LDQLLETQTQHQGIIAQIKDYNYTPFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSC 113

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIG 211
              + DGII   +     ++ + K++SG+   I   + +NL +A++ + +   W + T  
Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNDFWIYAT-N 172

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAA 269
           L+ +S    + +  N K A+I+G E KG+      T  S  ++++P    I + N S A 
Sbjct: 173 LNQNSTDMTKIDFAN-KTAVIIGNEQKGVSELL--TKNSDFNVYVPSNKNIDSFNASVAC 229

Query: 270 AVALYITQNHFAK 282
           ++  +   N+  K
Sbjct: 230 SIICFWIANYLNK 242


>gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 278

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 3/157 (1%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           APL  P  D + +S+ + VL+ VND  N+G++ R+A     D ++  K  +        +
Sbjct: 117 APLELP--DVLEHSRTVAVLEGVNDHENLGSMFRNAAGLGVDAVVFGKGCADPLYRRAVR 174

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEG 237
            + G +  +P+  ++     L  +   GFQ I L+ +     L + +  +K+AL+LGAEG
Sbjct: 175 VSMGHVLRVPFAHVTKWPHDLDALRERGFQLISLTPNPGAVTLAEAMTGEKVALLLGAEG 234

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL           A + M     +LNV+ AAA+A Y
Sbjct: 235 PGLTEHAMRATDIRARIPMAPGTDSLNVATAAAMAFY 271


>gi|50954851|ref|YP_062139.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951333|gb|AAT89034.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 277

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 88/169 (52%), Gaps = 4/169 (2%)

Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           +H+G LA    P L   +D +R ++ ++VL+ + D  N+GAI RS      D ++ + R 
Sbjct: 95  LHRGALAAMHRPALPAPVDLLREARRIVVLEDIVDHTNVGAIFRSVAGLGADAVLVSPRC 154

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IK 225
           +        + + G +  +P+ RI    +A   +   GF+   L+ +D    L++     
Sbjct: 155 ADPLYRRSVRVSMGTVLQVPWTRIPEWDEAAPLLRDAGFEIAALALADEAVALDEYAVAP 214

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +++A++LG+EG GL  +    A  +  + M   + +LNV++A+AVAL+
Sbjct: 215 PERVAMVLGSEGDGLSRRELAAADRVVAIPMLHGVDSLNVASASAVALW 263


>gi|317010773|gb|ADU84520.1| RNA methyltransferase [Helicobacter pylori SouthAfrica7]
          Length = 227

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   +   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   VYGKQVIMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I 
Sbjct: 57  LAKGGNHQGVLAKVELPLAISLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+    N  D + ++ + GF  +G +     P E ++
Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGANMQGSNPRE-DL 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 175 ALKKCALFLGSEHEGLSKKILAKMDTILSIKMRRNFDSLNVSVAAGILM 223


>gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 1313]
          Length = 267

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 2/149 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D        ++LD V DP N+G I+R+A A    G+I +K      +  + +S  G++ H
Sbjct: 110 DVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVLRSTMGSIFH 169

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           IP  +  ++ + + +M   G +      + S    + E KN+ IA+++G E  G+  + +
Sbjct: 170 IPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNN-IAIVIGNEANGISEEVK 228

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A  +  + MPG  ++LN S AA + +Y
Sbjct: 229 NFADILVRIPMPGRAESLNASVAAGILMY 257


>gi|78189687|ref|YP_380025.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
           CaD3]
 gi|78171886|gb|ABB28982.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
           CaD3]
          Length = 248

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 5/169 (2%)

Query: 111 HQGLALETAPLLSPTLDAV----RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+    + +   +L+ V    RNS  LL+VL  ++DPHN+GAI+R+A A + D ++  
Sbjct: 72  HQGVCALISSVTYYSLEEVLAQPRNSAPLLVVLQGLDDPHNLGAIIRTAEAVAADAVVVV 131

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +      +A + K+A+GAL H+   ++ +L   L+ +H    Q      D+++       
Sbjct: 132 EGKGSPINAAVHKAAAGALSHLRVCKVKSLVRTLEFLHQQKVQVFAADMDAERNYTDVDM 191

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               AL+LG EG GL P+  +   ++  L M G +++LNVS  A V LY
Sbjct: 192 RQPTALVLGMEGSGLAPEAMQFCDTVVRLPMAGCVESLNVSVTAGVLLY 240


>gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum ATCC 27405]
 gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
          Length = 267

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 2/149 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D        ++LD V DP N+G I+R+A A    G+I +K      +  + +S  G++ H
Sbjct: 110 DVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVLRSTMGSIFH 169

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           IP  +  ++ + + +M   G +      + S    + E KN+ IA+++G E  G+  + +
Sbjct: 170 IPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNN-IAIVIGNEANGISEEVK 228

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A  +  + MPG  ++LN S AA + +Y
Sbjct: 229 NFADILVRIPMPGRAESLNASVAAGILMY 257


>gi|317181870|dbj|BAJ59654.1| hypothetical protein HPF57_0580 [Helicobacter pylori F57]
          Length = 227

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   +   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVIMHILNSYQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+  +    L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I 
Sbjct: 57  LAKGGNHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  +
Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|269125514|ref|YP_003298884.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268310472|gb|ACY96846.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 273

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 98/194 (50%), Gaps = 14/194 (7%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIG 148
           PV     + ++ + G   VH+G   A+   PL S P L  +  ++ ++VL+ + D  N+G
Sbjct: 78  PVYLADERVLEGVAGFP-VHRGALAAMARTPLPSVPEL--IAAARRVLVLEDLVDHGNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R A A   D ++ + R +        K + GA+  IPY R+ +    L  + + GF+
Sbjct: 135 AIYRCAAALGVDAVVLSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLGDLRAAGFR 194

Query: 209 TIGLSSD-SKKPLEQEI--KNDKIALILGAEGKGLRPK-----TQETATSMAHLHMPGII 260
            + L+ D S  P+++ +    +++AL+LG+EG GL  +      +     M+   M   +
Sbjct: 195 LLALTPDQSAVPIDKAVPAAGERVALLLGSEGDGLSSRWLKEADEAVCIPMSPDAMDRGV 254

Query: 261 KALNVSNAAAVALY 274
            +LNV  AA++A Y
Sbjct: 255 DSLNVVAAASIACY 268


>gi|322831470|ref|YP_004211497.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
 gi|321166671|gb|ADW72370.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
          Length = 367

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            QGL  ET    +P  D V      + L++V +PHN+G I+RS   F  +G++      P
Sbjct: 203 RQGLDAETYLQTAPAKDCV------LALENVGNPHNLGGIMRSCAHFGINGMMVQ---DP 253

Query: 171 S--ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +  ES    ++A G  EH+  I   N  + L+     G+  +  SS     L +     K
Sbjct: 254 AQLESGAAVRTAEGGAEHVKAISADNFLEVLETFRKAGYTIVTTSSHKGTALGKAQLPAK 313

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           + L+LG E  GL     +       +   G +++LNVS A+ + L  +  QN 
Sbjct: 314 MVLVLGEESDGLSDSAWQQGDLSVSIGGTGKVESLNVSVASGILLAEWWRQNQ 366


>gi|307637236|gb|ADN79686.1| rRNA methylase [Helicobacter pylori 908]
 gi|325995827|gb|ADZ51232.1| rRNA methylase [Helicobacter pylori 2018]
 gi|325997421|gb|ADZ49629.1| putative rRNA methyltransferase [Helicobacter pylori 2017]
          Length = 227

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 10/226 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   ++  LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   VYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KR 167
             HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    R
Sbjct: 61  GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAR 120

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
               E  V  +S+ G +  +P+  + N  D + ++ + GF  +G S       E  +   
Sbjct: 121 EFAYEGIV--RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAEN-LSLK 177

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K AL LG+E +GL  K       +  + M     +LNVS AA + +
Sbjct: 178 KCALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223


>gi|289672601|ref|ZP_06493491.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
          Length = 129

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L 
Sbjct: 2   VIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELY 61

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 62  QQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 114


>gi|15672589|ref|NP_266763.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723502|gb|AAK04705.1|AE006293_11 tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406108|gb|ADZ63179.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis CV56]
          Length = 252

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 120/257 (46%), Gaps = 23/257 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WD 84
           +D KK++   +      +  +  + G H +  AL    R I Q+   +N L +L      
Sbjct: 7   KDNKKIKEARKLLTKKYRKNSYLIEGFHLLEEALK-AGRSIKQIFVEENKLTKLTEMIGS 65

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
             L     V  V  + +  +   E+  QGL  E   +    +D   ++   ++L++V DP
Sbjct: 66  EKLLTDLSVNLVSKEVLKSLADSES-PQGLIAEVTKI-EEVIDF--SAAKFLLLENVQDP 121

Query: 145 HNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
            N+G ++R+A A     +I    T   YSP     + +S  G+  H+P +R++   D   
Sbjct: 122 GNVGTMIRTADAAGFSAVILLGETADIYSPK----VMRSMQGSNFHLPLVRMAK-EDCFA 176

Query: 201 KMHSWGFQ--TIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP 257
           ++   G    T  LS++S   +  +I N+   ALI+G EG G+  +  + A  + H+ MP
Sbjct: 177 QLKKAGISILTTTLSANS---VSYKIINEPHFALIMGNEGAGVSDEAVKAADKLVHIDMP 233

Query: 258 GIIKALNVSNAAAVALY 274
           G  ++LNV+ AA + ++
Sbjct: 234 GQAESLNVAVAAGILMF 250


>gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
          Length = 260

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDA 128
           L  T+NAL +    A LP    +  V     DK+      HQG+        +P  TL+ 
Sbjct: 52  LFYTENALEKCPELAALPGEHYL--VEDHVADKLA-DVGTHQGV---FGVFRTPVHTLEE 105

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           VR     + L+ V DP N+G +LRSA AF  DG+I ++  +   +    +++ GA   IP
Sbjct: 106 VRPGGRYLALERVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIP 165

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE 246
            I    +  A+  +   G   +  +    +PL          + +++G+EG+GL  +T  
Sbjct: 166 VIETGAMPQAITLLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIA 225

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              S   + M   +++LN   A ++ L+    HF
Sbjct: 226 ACNSTVRIPMTDRVESLNAGIAGSILLW----HF 255


>gi|255713698|ref|XP_002553131.1| KLTH0D09680p [Lachancea thermotolerans]
 gi|238934511|emb|CAR22693.1| KLTH0D09680p [Lachancea thermotolerans]
          Length = 393

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 49/219 (22%)

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ------------------------------ 133
           I+   AVH  + LET PL  P +  V +                                
Sbjct: 170 ILTNYAVHNNVVLETKPLQLPEISQVGSCDPEGSTFAYDELFFDEASERRTSFIQKENKK 229

Query: 134 --LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + LD V+DPHN+GAI+RSA     D +I ++R     S  ++K++SGA E +P   
Sbjct: 230 FPLGLYLDEVSDPHNMGAIIRSAYFLGVDFMIMSRRNCAPLSPTVSKTSSGATELLPIFT 289

Query: 192 ISNLTDALQKMH--SWGFQTIGLSSDSK----KPLEQE-----IKNDKIALILGAEGKGL 240
           +    D   K     W F + G+S  +K    K +E +     +K   + L++G EG+G+
Sbjct: 290 VDKPLDFFSKSQKEGWTFVSAGVSKQNKFAKNKKIEAQDLHGMLKELPVILVVGNEGEGV 349

Query: 241 RPKTQETATSMAHL----HMPGI--IKALNVSNAAAVAL 273
           R   Q  +  +  +       G   + +LNVS A A+ L
Sbjct: 350 RTNLQMRSDFLVEIPQGRGAAGTRSVDSLNVSVATAILL 388


>gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
          Length = 260

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDA 128
           L  T+NAL +    A LP    +  V     DK+      HQG+        +P  TL+ 
Sbjct: 52  LFYTENALEKCPELAALPGEHYL--VEDHVADKLA-DVGTHQGV---FGVFRTPVHTLEE 105

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           VR     + L+ V DP N+G +LRSA AF  DG+I ++  +   +    +++ GA   IP
Sbjct: 106 VRPGGRYLALERVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIP 165

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE 246
            I    +  A+  +   G   +  +    +PL          + +++G+EG+GL  +T  
Sbjct: 166 VIETGAMPQAIALLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIA 225

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              S   + M   +++LN   A ++ L+    HF
Sbjct: 226 ACNSTVRIPMTDRVESLNAGIAGSILLW----HF 255


>gi|210134755|ref|YP_002301194.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
 gi|210132723|gb|ACJ07714.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
          Length = 227

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 18/230 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YG   +   LN+   K+ ++  +K        + +    F +K   P  I K+  K+A 
Sbjct: 5   VYGKQVIMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNII-KVDNKKAQ 55

Query: 111 -------HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                  HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I
Sbjct: 56  SLARGGNHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI 115

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                  +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E  
Sbjct: 116 LDFAKELAYEGIV-RSSLGLIYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|242238337|ref|YP_002986518.1| methyltransferase [Dickeya dadantii Ech703]
 gi|242130394|gb|ACS84696.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
          Length = 349

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 7/163 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            +GL ++T    +P  D V      + L+ V +PHN+G I+RS   F  +G++  +  S 
Sbjct: 185 RRGLDVQTYLPHAPEKDCV------LALEDVGNPHNLGGIVRSCAHFGVNGVLV-RDASQ 237

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            ES    ++A G  EH+  I+  NL DAL +    G+  +  SS     L       +  
Sbjct: 238 LESGAAVRTAEGGAEHVKAIQSDNLIDALSQFRKAGYTIVTTSSHKGTALYDTQLPARTV 297

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++LG E  GL     +       ++  G +++LN+S A  + L
Sbjct: 298 IVLGQESDGLSDGAWQQGDMKVSINGTGNVESLNISVATGILL 340


>gi|268590433|ref|ZP_06124654.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291314348|gb|EFE54801.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 364

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 100/244 (40%), Gaps = 15/244 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102
           E   +YG +   A   N    I +    ++   R    L W A     + V  V  + + 
Sbjct: 123 EETRIYGENACQAMFKNRPDAIVRAWFLQSVTPRFRDALKWMAANRKAYHV--VDDEELS 180

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           K  G E  H G+          + DA       +  ++ L+ V +PHN+G I+RS   F 
Sbjct: 181 KASGTEH-HGGVCFIIKKRGGMSADAYLQQAAGNDCVLALEDVGNPHNLGGIMRSCAHFG 239

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSK 217
             G+I  +     ES    ++A G  EHI  I    LTD L K    G+  +  SS    
Sbjct: 240 IKGVI-LQDAGMLESGAAIRTAEGGAEHIKAIDADGLTDTLDKFRKAGYTIVTTSSHKGS 298

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YI 275
           + L +     K+ L+LG E  GL   T +      ++   G +++LNVS A  + L  + 
Sbjct: 299 QDLAKAKLPAKMVLVLGQESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVATGIMLAQWW 358

Query: 276 TQNH 279
            QN 
Sbjct: 359 QQNQ 362


>gi|261839617|gb|ACX99382.1| 23S rRNA methyltransferase [Helicobacter pylori 52]
          Length = 227

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   ++  LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVITHLLNSHKEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RS+     DG+I 
Sbjct: 57  LAKGGNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSSYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E  +
Sbjct: 117 DFTKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K       +  + M     +LNVS AA + +
Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDMILSVKMRRDFDSLNVSVAAGILM 223


>gi|317012366|gb|ADU82974.1| RNA methyltransferase [Helicobacter pylori Lithuania75]
          Length = 227

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   V   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVVMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I 
Sbjct: 57  LAKGGNHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S       E  +
Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSNQAEN-L 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5]
          Length = 258

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 69/141 (48%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+MVL+ + DP N G ILR+       G+  TK      +  + +S  G++  +P++ + 
Sbjct: 110 LVMVLEDLQDPGNAGTILRTGEGAGVSGVFLTKTCVDITNPKVIRSTMGSIYRMPFLYVE 169

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++    +K+   G ++       +   +QE      A  +G EGKGL  +  E A  +  
Sbjct: 170 DVVSLEKKLKEKGIRSFAAHLKGENSYDQESYKGGTAFFIGNEGKGLTDQAAEAADCLIR 229

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + A+ + +Y
Sbjct: 230 IPMCGKVESLNAAMASGILMY 250


>gi|149195112|ref|ZP_01872204.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
           TB-2]
 gi|149134825|gb|EDM23309.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
           TB-2]
          Length = 221

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 14/186 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           F +K +  +   K+  K + HQG    +E  P      D + +   +++LD+V D  NIG
Sbjct: 40  FEIKFIDNKLAQKL-SKNSNHQGFFAKIEFTP---QNWDIIGDK--ILILDNVTDMGNIG 93

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A A   D +I T         ++ +++SGA   +  I I N+ D +  + + G+ 
Sbjct: 94  AITRTAYALGIDLLIITGINELKWDRII-RTSSGAALDMKIISIKNILDVINILKTKGYL 152

Query: 209 TIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +G     K KP     + +KIALILG EG+GL  K ++    +  + M     +LNVS 
Sbjct: 153 IVGADLGGKCKPS----RKNKIALILGNEGEGLNKKIKQKLDEVITIEMKREFDSLNVSV 208

Query: 268 AAAVAL 273
           AA + +
Sbjct: 209 AAGILI 214


>gi|290476233|ref|YP_003469133.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289175566|emb|CBJ82369.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 339

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           GL +ET    +P  D V      + L++V +PHN+GAI+RS   F   G+I  +  +  E
Sbjct: 176 GLDVETYLQQAPAKDCV------LALENVGNPHNLGAIMRSCAHFGVQGVI-LQDVAMLE 228

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIAL 231
           S    ++A G  EHI  I     T  L +    G+  +  SS      L +    +K+ L
Sbjct: 229 SGAAVRTAEGGAEHIKGIDADGFTTTLNQFRCAGYTIVTTSSHKGSTTLAKADLPEKMVL 288

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +LG E  GL     E       +   G I++LNVS A  + L
Sbjct: 289 VLGQESDGLSDSIWEDGDIRLSIGGTGRIESLNVSVATGIML 330


>gi|196006710|ref|XP_002113221.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
 gi|190583625|gb|EDV23695.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
          Length = 267

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 109/252 (43%), Gaps = 29/252 (11%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH------PFPVKTVPP--QTI 101
            +YG+     AL    RKI+ +   ++    L  + ++ H         +  +P   + +
Sbjct: 9   IIYGIAPCQLALKADRRKIYHIY-VRDPAGTLKPNKSIEHIIFKARKLGIHVLPSDKRYL 67

Query: 102 DKIVGKEAVHQGLALETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           DK+      HQG+A++  PL        L  T  A     L + L+ V DP N+GA++R+
Sbjct: 68  DKLTEGRP-HQGVAMKATPLRPNLIRHDLDKTAMANNRKALWLGLNDVQDPMNLGALIRT 126

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A     + ++   R +   SAV++K+++GA+E  P   + NL+  L  +    +  IG  
Sbjct: 127 AALMGVNRVVVNSRKTARLSAVVSKASAGAMEVYPIYAVKNLSKYLDYLVENDWNIIGTV 186

Query: 214 SDSKKPLEQEIKNDKI-------ALILGAEGKGLRPKTQETATSMAHL----HMPGIIKA 262
              +    Q +             L+LG EG G+    +E   S   +      P  I +
Sbjct: 187 GHKEVNQYQAMSCQNFNHNGKPTILMLGNEGFGISASIKEKCNSFLTIPTSSSCPPDIDS 246

Query: 263 LNVSNAAAVALY 274
           LNVS AA + LY
Sbjct: 247 LNVSVAAGILLY 258


>gi|257482400|ref|ZP_05636441.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 138

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L 
Sbjct: 11  VIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELY 70

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 71  QQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 123


>gi|237708881|ref|ZP_04539362.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724754|ref|ZP_04555235.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265756251|ref|ZP_06090580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229436949|gb|EEO47026.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456943|gb|EEO62664.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263233842|gb|EEZ19451.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 268

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 6/186 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI 
Sbjct: 79  PVYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++ T+      +    + + G++  +P+  +      L K+   GF+T  
Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTIGDLNKL---GFRTAA 195

Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           ++ +D    ++  I     ++A+++G EG+GL  KT   A  +  + M   + +LNV+ A
Sbjct: 196 MALTDDSISIDHPILAAEPRLAIVMGTEGEGLSYKTIAEADYVVRIPMAHGVDSLNVATA 255

Query: 269 AAVALY 274
           AAVA +
Sbjct: 256 AAVAFW 261


>gi|78189691|ref|YP_380029.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
 gi|78171890|gb|ABB28986.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
          Length = 265

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            A+   P   PT+   +   L++ LD V DP N+G I+R+A  F  D ++ ++  +   +
Sbjct: 97  FAIFRQPTFQPTIVNPQRRSLVVALDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYN 156

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             + +S +G+L  +P+ R + +   L +    G+  +  S + +     E   DK  +++
Sbjct: 157 PKVVRSCAGSLFALPHYRCNLMVHELSRWQQQGYSIVCSSLEGRDICGGEAFGDKTVIVI 216

Query: 234 GAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNAAAV 271
           G E  G+    Q +A  +  +   G    +++LN S AAA+
Sbjct: 217 GNEANGVSQAVQASADMLVRIPHAGSKPAVESLNASIAAAI 257


>gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX]
 gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX]
          Length = 275

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 113/253 (44%), Gaps = 30/253 (11%)

Query: 41  RHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT---- 95
           R   Q E  FL  G   V  AL+ P   + +L AT  A+ R        H   ++T    
Sbjct: 23  RAFRQRERRFLAEGPQAVREALDLPD-VVHELYATAEAMQR--------HTALIRTAEQA 73

Query: 96  -VPPQ--TIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            +P    T+D +  + +    QGL L     +   L AV   +L++VL HV DP N G +
Sbjct: 74  GIPVHRVTLDVMGELAQTVTPQGL-LAVCSFVDVPLSAVDRPRLVVVLSHVRDPGNAGTV 132

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY---IRISNLTDALQKMHSWGF 207
           LRSA A   D +I T       +    ++++G+L H+P    +RI  +T  L+     G 
Sbjct: 133 LRSADAAGADAVIFTDASVDPYNGKCVRASAGSLFHLPVVVGVRIEEVTGFLRDA---GL 189

Query: 208 QTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             +      K+ L++     +    +A I G E  GL  +T   A     + + G  ++L
Sbjct: 190 TLLAADGQGKRTLDEAADAGMLTGPVAWIFGNEAWGLPQETLALADETVSVPIYGRAESL 249

Query: 264 NVSNAAAVALYIT 276
           N++ AAAV LY T
Sbjct: 250 NLATAAAVCLYAT 262


>gi|332885426|gb|EGK05675.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas mossii
           DSM 22836]
          Length = 246

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 23/217 (10%)

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-------LALE 117
           S+++F LL +++                V+ VP + +D+   K   HQG       +  E
Sbjct: 37  SKELFALLKSRD--------------IAVQRVPNERLDRFTRKN--HQGVIAFLSAITYE 80

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               + P L        ++VLD + D  N GAI R+      D I+   + S + +A   
Sbjct: 81  HIEDIIPFLYEQGKDPFILVLDGITDVRNFGAIARTCEVAGVDAIVIPAKGSVTVNADAI 140

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GAL  IP  +  +LT+A+Q + + G + +  +            +  IA ++GAE 
Sbjct: 141 KTSAGALLKIPVCKEQSLTNAIQFLKNSGIKVVAATERGADDYTAVDYSGPIAFVMGAED 200

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+       A ++  +   G I +LNVS AA V +Y
Sbjct: 201 TGVSNDNLRIADNLVKIPQFGTIGSLNVSVAAGVLIY 237


>gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
 gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
          Length = 223

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 81  LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 139

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +  M   GF   G   ++    L++  K +  A+I+G EG+G+  +         ++
Sbjct: 140 ADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 199

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 200 PMKGNAESLNVGVAAGIVLY----HFS 222


>gi|197301328|ref|ZP_03166413.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
           29176]
 gi|197299646|gb|EDY34161.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
           29176]
          Length = 279

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 68/130 (52%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD++ DP N+G I R+A A    GI+ +       +  + +S  GA+  +P+  + +
Sbjct: 132 VIVLDNLQDPGNLGTIFRTAEAAGATGILLSSDSVDVYNPKVIRSTMGAVFRMPFFYVKD 191

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L  A++ + S G +T     + K   ++E   +  A ++G EG GLR +  E A  +  +
Sbjct: 192 LPAAVKSLSSQGIRTYAAHLNGKNVYDEEDYTEGCAFLIGNEGNGLRDEVSECADCLIRI 251

Query: 255 HMPGIIKALN 264
            M G  ++LN
Sbjct: 252 PMCGKAESLN 261


>gi|303248118|ref|ZP_07334383.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
           JJ]
 gi|302490517|gb|EFL50425.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
           JJ]
          Length = 196

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 4/149 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEH 186
           A R + L +V+++++DPHN+ AILRS  AF    +     Y+ +    L K +SG A + 
Sbjct: 18  AKRQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLL--YTDTAFPALGKKSSGSAKKW 75

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   R  +       +   GF  +  S S++ +PL++     K+A+ILG E +G+  +  
Sbjct: 76  VETTRHPDAASLASSLKGQGFALVATSFSETARPLQEWDLTGKVAIILGNEHRGVDEELA 135

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  ++ M G++++LNVS AAAV LY
Sbjct: 136 PYVDGALYIPMQGMVQSLNVSVAAAVILY 164


>gi|257063283|ref|YP_003142955.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
 gi|256790936|gb|ACV21606.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
          Length = 286

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 8/146 (5%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A + D ++ T            + + G +  +P+ R+    
Sbjct: 136 VLEGIVDHTNVGAIFRSAAALNVDAVLVTPTCCDPLYRRAVRVSMGTVFQVPWTRLGEDV 195

Query: 197 -----DALQKMHSWGFQT--IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETA 248
                  L+++H+ GF+T  + LS DS    +  +   +K+AL+ G EG GL P+T  T 
Sbjct: 196 HDWPGQGLERLHALGFKTAAMALSDDSVSLGDPTLAAEEKLALVFGTEGDGLSPRTIATC 255

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   + +LNV+ A+AVA +
Sbjct: 256 DYTVRIPMSHGVDSLNVAAASAVAFW 281


>gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
 gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
          Length = 268

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 1/149 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +++++ ++VL+ VND  N+G++ R+A     D ++  K  +        + + G +  
Sbjct: 113 DVLKDAKTVVVLEGVNDHENLGSMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLR 172

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P+  ++     L ++   GFQ I L+ + +   L + +  +K+AL+LGAEG GL     
Sbjct: 173 VPFAHVAKWPHDLDELRGNGFQLISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAM 232

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 A + M     +LNV+ AAA+A Y
Sbjct: 233 RATDIRAKIPMAPGTDSLNVATAAAMAFY 261


>gi|295660999|ref|XP_002791055.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
 gi|226280982|gb|EEH36548.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
          Length = 623

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 20/154 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD + DP N+GAI+RSA  F  D +I + R S   SAV  K+++GA E+IP +  +N 
Sbjct: 419 LFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKASAGAAENIPILTTTNP 478

Query: 196 TDALQKMHS--WGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237
           T  ++  H+  W F             QT+   ++   S++ +  ++      L+LG+E 
Sbjct: 479 TLFVKSSHTNGWKFFAAEAPAAANASQQTLEAPTEQVLSRREVSTKLNEAPCVLMLGSEE 538

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +GL    ++ A     + +PG I A NV + A V
Sbjct: 539 QGLPRSIRQQADGA--VVIPGAITASNVEDRAGV 570


>gi|306832022|ref|ZP_07465177.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304425948|gb|EFM29065.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 246

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 7/201 (3%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           N     D+   + H   V  V P+ + ++   +   QG+  E A    P  D      L 
Sbjct: 48  NIFVLEDYADRVSHFSMVTYVTPEVLKELTDSKT-PQGIIAEVAMPSLPLADLKAGRYL- 105

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            VL+ V DP N+G ++R+A A   DG++ +++ +   +    +S  G+  H+P  R +++
Sbjct: 106 -VLEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQGSHFHLPIWR-TDV 163

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAH 253
            +A QK+ +     I  ++ SK+ ++ +    N   AL++G EG G+     + A  +AH
Sbjct: 164 YEACQKLQNLDVPLIA-TTLSKESVDYKTVEHNGDFALVMGNEGNGISELMTKQADILAH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ A  + L+
Sbjct: 223 IIMPGQAESLNVAVATGIVLF 243


>gi|291459362|ref|ZP_06598752.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417961|gb|EFE91680.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 250

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 15/193 (7%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLA--------LETAPLLSPTLDAVRNSQ--LLMVLDHV 141
           P+  V    +D++ G E  HQG+          E + +LS   DA    +   L++LD +
Sbjct: 51  PLDFVKRSRLDEMSGGEN-HQGVMAYLAAYRYYEISDMLS---DAREKGEDPFLILLDGI 106

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+GAI+R+A      G++  KR +   +A  AK+++GAL +    +++NL+  +++
Sbjct: 107 EDPHNLGAIIRTANLAGAHGVVIPKRRAAGLTASAAKASAGALNYTKVAKVTNLSKTIEE 166

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G   +    + +    Q +    IAL++G EG+G+    +E+    A + M G I 
Sbjct: 167 LKKEGIWFLCADMEGESMYRQRLTG-PIALVIGNEGEGVSRLVRESCDMRASIPMKGEID 225

Query: 262 ALNVSNAAAVALY 274
           +LN S A  V  Y
Sbjct: 226 SLNASVACGVLAY 238


>gi|166032323|ref|ZP_02235152.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
           27755]
 gi|166028046|gb|EDR46803.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
           27755]
          Length = 288

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 25/203 (12%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           P+ T   + + K+ G +     L A++  PLL+   D       +++L++V +P N+GAI
Sbjct: 84  PIFTAEFEVLTKLTGFKLTRGMLCAMKRKPLLNYQ-DMCAGKDRIVILENVMNPTNVGAI 142

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSAS----GALEHIPYIRISNLTD--------- 197
            RSA A + D +  T    P  S  L + AS    G +  IP+  I +  +         
Sbjct: 143 FRSAAALNMDAVFLT----PGCSDPLYRRASRVSMGTVFQIPWTFIQDNNEMRCQREILW 198

Query: 198 ---ALQKMHSWGFQT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSM 251
              A+ ++   G++T  + L+ DS      E+ + +K+A+ILG EG+GL  +T E     
Sbjct: 199 PRQAITELREMGYKTAALALTDDSVGIDNPELMQEEKLAIILGTEGEGLMDRTIEMCDYT 258

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M   + +LNV+ A+AVA +
Sbjct: 259 VKIPMSHDVDSLNVAAASAVAFW 281


>gi|308187856|ref|YP_003931987.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
 gi|308058366|gb|ADO10538.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
          Length = 394

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 3/159 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +S  L        ++ L+ V++PHN+GAI+RS   F   G++     S  ES    ++A 
Sbjct: 236 VSEWLSQANTKDCVLALEDVSNPHNLGAIMRSCAHFGVKGLLVND-ASLLESGAAVRTAE 294

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G  EH+  I  +  ++ L+     G+  +  SS    PL Q    +K+ L+LG E +GL 
Sbjct: 295 GGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAQLPEKMVLVLGQEREGLS 354

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQN 278
               +       +   G +++LNVS A  V  A +  QN
Sbjct: 355 DTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQN 393


>gi|119505868|ref|ZP_01627933.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2080]
 gi|119458296|gb|EAW39406.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2080]
          Length = 255

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQL-LATKN----ALARLDWDANLPHPFPVKTVPPQTIDK 103
           L +YG + V  AL++P+    +L  AT N    A  R+   A+      V+    +T+ +
Sbjct: 14  LTIYGRNAVFEALSDPTIACLRLHWATSNQKSPATKRI-LQASEARGIDVREHTRKTLSR 72

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFS 158
           I       QG+AL+       + D +++S       ++ LD + +P N+G I+RSAVA  
Sbjct: 73  ISRNGKQDQGVALDITCEKFSSFDELKDSLSTSSLRILALDGITNPQNVGMIIRSAVAGG 132

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D I+  K+   +   ++ K+++G +   P I   +L  AL+++   G     L  +S  
Sbjct: 133 IDAILYPKKGVATLGPLVIKASAGIVFKAPIIPCDSLAPALEQLQIGGAAIATLEGNSAT 192

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L        +  +LG E  G+  +    A    H+ M   +++LNV+ AA++  Y
Sbjct: 193 SLFTYRPAKSVVYVLGGESDGVSSQVSNLADIKLHIPMGSGVESLNVAVAASLVAY 248


>gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 281

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 77/149 (51%), Gaps = 1/149 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +++++ ++VL+ VND  N+G++ R+A     D ++  K  +        + + G +  
Sbjct: 126 DVLKDAKTVVVLEGVNDHENLGSMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLR 185

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P+  ++     L ++   GFQ I L+ + +   L + +  +K+AL+LGAEG GL     
Sbjct: 186 VPFAHVAKWPHDLDELRGNGFQLISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAM 245

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 A + M     +LNV+ AAA+A Y
Sbjct: 246 RATDIRAKIPMAPGTDSLNVATAAAMAFY 274


>gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 256

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 15/168 (8%)

Query: 122 LSPTLDAVRNSQLL-----MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           L   LD V+    L     ++L+++ DP N+G I+R+  AF    I +   +  S+   +
Sbjct: 90  LCNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSGVDFYNSK---V 146

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKND-KIALIL 233
             ++ GA+   P +++ NL+  L K+H   F +IG  LS  + K  +  I+N+ K A+I 
Sbjct: 147 ISASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIF 206

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNH 279
           G E  G+    ++       +++P   ++LN++NA A+ LY   TQN+
Sbjct: 207 GNESSGISAALEKIIQK--QIYIPIAFESLNIANATAILLYEFSTQNY 252


>gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
          Length = 261

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 74/139 (53%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           M++D V DP N+G I+R+A A    G+I TK      +    ++  G++  IP I   + 
Sbjct: 116 MLVDKVQDPGNMGTIIRTANAAGALGVIITKGTVDIYNNKTLRATMGSIFKIPIIFEDDN 175

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++++   GF+ I  S D++        N+K+ + +G EG G+  K  + + +   + 
Sbjct: 176 FSKIKELKKNGFKIIASSLDTEHNFYDVSLNEKLIIAVGNEGNGISDKIVDISDTKVKIP 235

Query: 256 MPGIIKALNVSNAAAVALY 274
           MPG +++LNV  AAA+ ++
Sbjct: 236 MPGNVESLNVGVAAAIMMF 254


>gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6]
 gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF]
 gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6]
 gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF]
          Length = 254

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            + +  M   GF   G   ++    L++  K +  A+I+G EG+G+  +   +     ++
Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSSTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|84496489|ref|ZP_00995343.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84383257|gb|EAP99138.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 269

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 4/159 (2%)

Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           +H+G LA    P L    + V +++ ++V++ V D  N+GA+ RSA A   D ++ T R 
Sbjct: 96  LHRGTLASMQRPELKSVEEVVADARRVLVIEDVVDHTNVGAVFRSAAALGMDAVLVTPRC 155

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN- 226
           +        + + G +  +P+ RI      +  +   GF    L+ SD    L++   N 
Sbjct: 156 ADPLYRRAIRVSMGTVFQVPWTRIDPWPRGINLLRDSGFTVAALALSDDAVGLDELAANP 215

Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            +++AL+LG EG GL  +T E A  +  + M G + +LN
Sbjct: 216 PERLALVLGTEGDGLSRRTVEGADVVVKIPMAGGVDSLN 254


>gi|256372440|ref|YP_003110264.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009024|gb|ACU54591.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 232

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGAL 184
           ++A+ +  +++ LD V DP N+G ++R+A A S   G++     +   +   A++A+GAL
Sbjct: 72  VEALEDRLVVLALDGVQDPGNVGTLVRTAAALSDAVGVLVGPGSADPFNPKAARAAAGAL 131

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E +P   +  LT AL+++   G + IGL   +  PL  E +  +  L++GAEG GL    
Sbjct: 132 ERVPIAEVDELTPALRELRVRGARVIGLDPRAPSPLAPETQ--RRVLVVGAEGAGLSAAV 189

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  A L +P  +++LN + A A+AL+++    A
Sbjct: 190 DGELDERAALVVPPRLESLNAAVAGALALWVSLGGGA 226


>gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 256

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 15/168 (8%)

Query: 122 LSPTLDAVRNSQLL-----MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           L   LD V+    L     ++L+++ DP N+G I+R+  AF    I +   +  S+   +
Sbjct: 90  LCNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSGVDFYNSK---V 146

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKND-KIALIL 233
             ++ GA+   P +++ NL+  L K+H   F +IG  LS  + K  +  I+N+ K A+I 
Sbjct: 147 ISASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIF 206

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNH 279
           G E  G+    ++       +++P   ++LN++NA A+ LY   TQN+
Sbjct: 207 GNESSGISAALEKIIQK--QIYIPIAFESLNIANATAILLYEFSTQNY 252


>gi|86132534|ref|ZP_01051127.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85816776|gb|EAQ37961.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 244

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 9/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIG 148
           VP + ++K+   +  HQG     +P+     + + N       + L ++LD ++D  N G
Sbjct: 54  VPIEKLNKLT--QLNHQGAVATISPVKYHDFEELVNRTVESGETPLFILLDQLSDVRNFG 111

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R+A      G+I  K+     + V  K+++GA   +P  ++ ++ DA+  +   G Q
Sbjct: 112 AIIRTAECTGAHGVIIPKKGGAPLNGVAVKTSAGAAFSMPIAKVDHIKDAIYYLQGSGIQ 171

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +  +   L      +  A+++G E  G+ P   +     A L + G I +LNVS A
Sbjct: 172 VVAATEKTDNTLYDVDFKEPTAIVMGREDSGVSPGVLKIVDHQAKLPLKGSIASLNVSVA 231

Query: 269 AAVALY 274
               LY
Sbjct: 232 CGAFLY 237


>gi|57168674|ref|ZP_00367806.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
           RM2228]
 gi|305432697|ref|ZP_07401857.1| RNA methyltransferase [Campylobacter coli JV20]
 gi|57019955|gb|EAL56635.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
           RM2228]
 gi|304444206|gb|EFM36859.1| RNA methyltransferase [Campylobacter coli JV20]
          Length = 227

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 3/182 (1%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            F +K +  +T  +   K   HQG  L+        L  ++  + + +L  ++D  NIGA
Sbjct: 41  GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKEYEFKDLHTLKKGEFIAILYGISDVGNIGA 99

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A   DG+I        E  +  +++SGA   +     +++   L ++   GF+ 
Sbjct: 100 IVRTAYALGVDGLIFIGERLAMEGVI--RTSSGAALDLEIALNNDIFTVLNELKQVGFKL 157

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
              +S  K+    ++   K ALILG+EG GL  K  +       + M     +LNVS A 
Sbjct: 158 FASASGGKQIHHYKVDKGKKALILGSEGLGLSAKIIKKCDECVGIEMKNNFDSLNVSVAF 217

Query: 270 AV 271
           A+
Sbjct: 218 AI 219


>gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 277

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 9/210 (4%)

Query: 71  LLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA- 128
           LL T   LA L  D A    PF       + + ++VG   +++G+      +  PT+   
Sbjct: 64  LLGTDRRLAELAGDLAGRAVPF--YRTSAEVMAQVVGFH-LNRGVLAAARRVPEPTVAGL 120

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V  ++ + VL+ VND  N+G+I R+A     D ++     +        + + G    +P
Sbjct: 121 VEGARTVAVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVP 180

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKT 244
           Y R ++    L+ +   GF+ + ++ DS      E     ++++IA+++GAEG GL P T
Sbjct: 181 YARATDWPAELKMLKQKGFRVLAMTPDSTACALPEAMAAARDERIAVVVGAEGPGLTPAT 240

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + +   + M     +LNV+ AAA+A Y
Sbjct: 241 LRLSDARVRIPMSRGTDSLNVATAAALAFY 270


>gi|288906003|ref|YP_003431225.1| rRNA methylase [Streptococcus gallolyticus UCN34]
 gi|288732729|emb|CBI14303.1| putative rRNA methylase [Streptococcus gallolyticus UCN34]
          Length = 246

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 17/206 (8%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGK---EAVHQGLALETAPLLSPTLDAVRNS 132
           N     D+   + H   V  V P+ + ++      + +   LA+ + PL    L A R  
Sbjct: 48  NIFVLEDYADRVSHFSMVTYVTPEVLKELTDSKTPQGIIAELAMPSLPL--ADLKAGR-- 103

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL+ V DP N+G ++R+A A   DG++ +++ +   +    +S  G+  H+P  R 
Sbjct: 104 --YLVLEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQGSHFHLPIWR- 160

Query: 193 SNLTDALQKMHSWGFQTIG--LSSDS--KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +++ +A QK+ +     I   LS +S   K +E    N   AL++G EG G+     + A
Sbjct: 161 TDVYEACQKLQNLDVPLIATTLSKESVDYKTIEH---NGDFALVMGNEGNGISELMTKQA 217

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +AH+ MPG  ++LNV+ A  + L+
Sbjct: 218 DILAHIIMPGQAESLNVAVATGIVLF 243


>gi|89897126|ref|YP_520613.1| hypothetical protein DSY4380 [Desulfitobacterium hafniense Y51]
 gi|89336574|dbj|BAE86169.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 275

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 8/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     +  + G +     L     P L    +A   +  + VL+ + D  N+GAI
Sbjct: 79  IPVYTADSNLLAGLTGFQLTRGVLCAMRRPHLPSVEEACAGASRVAVLEGIADSTNVGAI 138

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQKMHSW 205
            RSA A   D ++ T            + + G +  +P+ RI + +       ++ +   
Sbjct: 139 FRSAAALGIDTVLLTPSCCDPLCRRAVRVSMGTIFQVPWARIGSESSQWPQQGMKSLRKL 198

Query: 206 GFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF+T+ ++ +D+   ++  Q +  +K+A++LG+EG GL P T       A + M   + +
Sbjct: 199 GFKTVAMALNDNAVSIDDPQLMAEEKLAIVLGSEGNGLAPCTIADCDYTACIPMSHNVDS 258

Query: 263 LNVSNAAAVALY 274
           LNV+ A+AVA +
Sbjct: 259 LNVAAASAVAFW 270


>gi|251788493|ref|YP_003003214.1| putative methyltransferase [Dickeya zeae Ech1591]
 gi|247537114|gb|ACT05735.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
          Length = 397

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +  ++ L+ V +PHN+G I+RS   F   G++     S  ES    ++A G  EH+  I 
Sbjct: 248 TDCVLALEDVGNPHNLGGIMRSCAHFGVKGVLVND-ASQLESGAAVRTAEGGAEHVKAIS 306

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
              L DAL +  + G+  +  SS     L +     K  ++LG EG GL     +     
Sbjct: 307 AEGLVDALAQFRAAGYTIVTTSSHKGTTLSKVALPAKSVIVLGQEGDGLSDSAWQQGDVK 366

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQNH 279
             +   G +++LN+S A  + L  +  Q+H
Sbjct: 367 VSIDGTGNVESLNISVATGILLAEWWRQHH 396


>gi|313624066|gb|EFR94149.1| rRNA methyltransferase [Listeria innocua FSL J1-023]
          Length = 252

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  AL      + +LL +       +W   L
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEW---L 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V  +  + I  ++      QG+      +  P +  +   +LL+V D V DP N+
Sbjct: 65  KGDYDVFEISSE-ISHLISDTMTEQGV-FAVVAISEPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  +  +   +  + +S  G+  HIP I+ ++L + +  +   G 
Sbjct: 122 GTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFEWVGNLEEEGV 180

Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG +  D  K L    K + +AL++G EG G+  + Q+  +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISEELQDRLSEKVYIPIYGDSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|283850256|ref|ZP_06367545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
 gi|283574282|gb|EFC22253.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
          Length = 196

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIP 188
           R + L +V+++++DPHN+ AILRS  AF    +     Y+ +    L K +SG A + + 
Sbjct: 20  RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLL--YTDTAFPALGKKSSGSAKKWVE 77

Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            IR  +       +   G+  +  L S++ +PL+      K+A+ILG E +G+       
Sbjct: 78  TIRHPDAASLAASLKGQGYTLVATLCSETARPLQDWDLTGKVAIILGNEHRGVDEDLAPH 137

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
                ++ M G++++LNVS AAAV LY    Q H A
Sbjct: 138 VDGALYIPMQGMVQSLNVSVAAAVILYEGFRQRHAA 173


>gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 240

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V + Q  ++LD V DP N+G ++R+A+AF  D +I ++      +  + ++  GAL  + 
Sbjct: 93  VEDGQRYLLLDRVQDPGNVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQGALFQMN 152

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            + + NL DA+  +   G    G        +E     DK+A ++G EG+G+  +  E  
Sbjct: 153 -VCVMNLKDAIVFLKHQGVDVYGTCLRDASSIETYQVKDKMAFVMGNEGQGVCDEILELC 211

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHFAK 282
                L++P   +++LNV  A+A+ +Y    HF K
Sbjct: 212 QH--RLYIPIQTVESLNVGIASAITMY----HFQK 240


>gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
 gi|156867100|gb|EDO60472.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
          Length = 270

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 4/240 (1%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT-V 96
           + ++   Q E     GV     A  +  R I ++  T+ AL R   D  L      +  +
Sbjct: 21  KSAKFRRQEEAFLAEGVRLCRDAAYSGVR-ILRMFYTEEALERYPKDVELLREKAERAFL 79

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             Q +   +      QG+    A L  +  LD +  S  L+ L+ + DP N+G +LR+A 
Sbjct: 80  LSQQLAGGLSATVTPQGIFCVCAMLDKTDCLDKMDASGQLLGLEDIQDPSNLGTVLRTAE 139

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I T+      S  + + + GA+  +P   +  +  A+  +   GF T+    D
Sbjct: 140 ALGIGGVILTRGCCDIYSPKVLRGSMGAVFRLPMALVETMPPAVNALEQKGFVTMAAVPD 199

Query: 216 SK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +P+ Q + +    +++G EG GL+P+T         + M G  ++LN S AA++ ++
Sbjct: 200 REAEPITQVLFSSPSIVLVGNEGNGLKPETIRACQRRVTIPMLGRAESLNASVAASLLMW 259


>gi|145510039|ref|XP_001440955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408189|emb|CAK73558.1| unnamed protein product [Paramecium tetraurelia]
          Length = 261

 Score = 69.7 bits (169), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 39/260 (15%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK------------NALAR---LDWD 84
           SR +SQ    +LYG++ V +AL    R   QL   +            N L R   L  D
Sbjct: 8   SRFSSQKSYDYLYGINPVMSALYANKRSFTQLYVNQTQQNDYINPRVSNILNRAQSLKLD 67

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                   V+ +P   +++    +  HQ + L+ + L     + + +    ++LD V DP
Sbjct: 68  --------VQMIPKNKLERYCSNDH-HQNVILKCSKL--NYCNQLPDESNFVLLDSVQDP 116

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL-QKMH 203
            N GAILR       + +I  K+     S  ++K+++GALE +      NL + + Q+ H
Sbjct: 117 QNFGAILRVCFFLGINTVIVEKKGQCPLSPTVSKTSAGALELMNIFETDNLANFVKQRKH 176

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMA------H 253
              FQ IG   +S      E + D    K  +I G+E  G+R +  +   ++       H
Sbjct: 177 E--FQVIGSGFESNSIPIDEFQKDQNKPKKIIIFGSESSGIRTELFKQCDTIVNIMTSRH 234

Query: 254 LHMPGIIKALNVSNAAAVAL 273
                ++ +LNVS +A + L
Sbjct: 235 TFPETLVDSLNVSVSAGIIL 254


>gi|315586762|gb|ADU41143.1| RNA methyltransferase [Helicobacter pylori 35A]
          Length = 227

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 10/226 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   +   LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   IYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             HQG LA    PL  P L  V+ +Q L+VL  + D  NIG I RSA     DG+I    
Sbjct: 61  GNHQGVLAKVELPLALP-LKEVKKTQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFA 119

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
              +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  +   
Sbjct: 120 KELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLK 177

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 178 KCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|291523643|emb|CBK81936.1| rRNA methylases [Coprococcus catus GD/7]
          Length = 274

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     + ++ G       L +     L    D  +N++ + +L+ V +P N+GAI
Sbjct: 79  IPVYTAEFDVLTQLTGFGLTRGMLCVMRRKGLPSVEDVCKNARRIAILEDVMNPTNVGAI 138

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSWG 206
            RSA A   DGI+ T   S        + + G +  IP+     ++S    A+ ++H  G
Sbjct: 139 FRSAAALGMDGILLTSASSNPLYRRAIRVSMGTVFQIPWTFMDSQMSWPEPAVGRLHEMG 198

Query: 207 FQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+   ++ D         Q +  +K+A++LG EG GL   T         + M   + +L
Sbjct: 199 FKIAAMALDDNSVSIDDPQLVHEEKLAIVLGTEGDGLAANTIADCDYTVKIPMYHGVDSL 258

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 259 NVAAASAVAFW 269


>gi|327351571|gb|EGE80428.1| RNA methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 596

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 20/154 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  N+GAI+RSA  F  D II + R S   SAV+ K+++GA E+IP +  +N 
Sbjct: 393 LLLDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVVIKASAGAAENIPILTTTNP 452

Query: 196 TDALQ--KMHSWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237
           T+ L+  +M+ W               QT G S++   S++ +  ++      L+LG+E 
Sbjct: 453 TNFLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRRDVSTKLSEAPCILMLGSED 512

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +GL+   ++ A     + +PG I   +  + A V
Sbjct: 513 QGLQRSVRQQAD--GAVVIPGAITLSSAEDRAGV 544


>gi|56478867|ref|YP_160456.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56314910|emb|CAI09555.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 261

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 34/265 (12%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++   K++ +    +R         L G H V AAL+     + +L+A+   L R +  
Sbjct: 7   RDNPAVKRLHALAHSARDRRSEGRTLLDGAHLVRAALDA-GWPLRELVASDQGLGRAEI- 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPT-LDAVRN---------- 131
           A+L             +++  G  A+H   AL    +P+ +P+ L AV +          
Sbjct: 65  ADL-------------LERCTGVPAIHLTDALFAHVSPVDTPSGLLAVIDLPVPPPTRAF 111

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++ L+VLD V D  N+G ILR+A A     ++ T   + + S  + ++  G   H   +R
Sbjct: 112 AESLLVLDGVQDAGNLGTILRTAAAAGMRDVLLTPGCAQAWSPRVLRAGMGG--HF-CLR 168

Query: 192 ISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +    D    +  +  Q +  GL + ++   E +++   +A + GAEG+GL       AT
Sbjct: 169 LYEHADVAVLLQGYPGQILATGLGAGARGLYEMDLRG-TVAWLFGAEGRGLSMAVAALAT 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + MPG +++LNV+ AAAV L+
Sbjct: 228 DTVVIPMPGAVESLNVAAAAAVCLF 252


>gi|317013971|gb|ADU81407.1| RNA methyltransferase [Helicobacter pylori Gambia94/24]
          Length = 227

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 10/226 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   +   LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   VYGKQVIMHILNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KR 167
             HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I    R
Sbjct: 61  GNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAR 120

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
               E  V  +S+ G +  +P+  + N  D + ++ + GF  +G S       E  +   
Sbjct: 121 EFAYEGIV--RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAEN-LSLK 177

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K AL LG+E +GL  K       +  + M     +LNVS AA + +
Sbjct: 178 KCALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223


>gi|283853731|ref|ZP_06370959.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           FW1012B]
 gi|283570881|gb|EFC18913.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           FW1012B]
          Length = 274

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 3/155 (1%)

Query: 122 LSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           L   L+A RN+ L   + LD V DP N+GA+ R+  A    GII  +          AK+
Sbjct: 108 LDDVLEATRNAPLPVALALDRVQDPGNVGALARTLYALGGGGIILPRHEGARLGPGAAKA 167

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGK 238
           ++G L  +P  +++NL+ AL++    GF  +G + +         + +  + L+LG E +
Sbjct: 168 SAGTLSRLPVAKVANLSRALEEAAEAGFAVVGAAGEDGAENALAARPEFPLVLVLGNEDE 227

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G+R   ++   ++  +     + +LNV+ A A+ L
Sbjct: 228 GIRLGVRKRCQTLYRIPQARPLDSLNVAQAGAILL 262


>gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 285

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 15/192 (7%)

Query: 99  QTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +T+ ++ G + +H+GL  A   AP L  + + ++ +  ++VL+ V D  NIG+I R+A  
Sbjct: 88  ETLAQVAGYD-MHRGLLAAANRAPELGLS-EVIKTATTVVVLEGVGDHENIGSIFRNAAG 145

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKMHSWGFQTIGL 212
              D I+     +        + + G +  +P+       +N    L ++   GFQ + L
Sbjct: 146 LGVDAILFGNGCADPLYRRSVRVSMGHVLRLPHASFEGKHTNWHYGLDQLKESGFQLVSL 205

Query: 213 SS-DSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           +  +   PL+Q + +      +KIAL++GAEG GL  +T       A + M     +LNV
Sbjct: 206 TPHEDAVPLDQALYDGNGVPYEKIALLVGAEGPGLTERTMRRTDIRARIPMSAGTDSLNV 265

Query: 266 SNAAAVALYITQ 277
           + AAA+ALY  Q
Sbjct: 266 ATAAAIALYERQ 277


>gi|239606661|gb|EEQ83648.1| RNA methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 522

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 20/154 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  N+GAI+RSA  F  D II + R S   SAV+ K+++GA E+IP +  +N 
Sbjct: 319 LLLDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVVIKASAGAAENIPILTTTNP 378

Query: 196 TDALQ--KMHSWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237
           T+ L+  +M+ W               QT G S++   S++ +  ++      L+LG+E 
Sbjct: 379 TNFLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRRDVSTKLSEAPCILMLGSED 438

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +GL+   ++ A     + +PG I   +  + A V
Sbjct: 439 QGLQRSVRQQAD--GAVVIPGAITLSSAEDRAGV 470


>gi|282601244|ref|ZP_05981182.2| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
 gi|282569669|gb|EFB75204.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
          Length = 297

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 16/160 (10%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA----SG 182
           +  RN++ + VL+ + D  NIGAI RSA A   D ++     SPS    L + A     G
Sbjct: 137 EVCRNARRVAVLEGIVDSTNIGAIFRSAAALGMDAVL----LSPSCCDPLCRRAIRVSMG 192

Query: 183 ALEHIPYIRISN-----LTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILG 234
            +  +P+ R+           L ++H+ GF T  ++ D +  P++       +K+A++LG
Sbjct: 193 TVFQVPWARLGEDKTQWPEAGLARLHAMGFTTAAMALDDRALPVDDPALQAAEKLAIVLG 252

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            EG GL  +T     +   + M   + +LNV  AAAVA +
Sbjct: 253 TEGDGLAAETIARCDATVMIPMQHGVDSLNVGAAAAVAFW 292


>gi|50290571|ref|XP_447717.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527027|emb|CAG60662.1| unnamed protein product [Candida glabrata]
          Length = 384

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 60/328 (18%)

Query: 6   KKKSEKIFSL--KDSHYAKLR---RNHRDYKKMQSFNQKSRHTS------QPENLFLYGV 54
           +KK +K  SL  +++H  +L     ++RD K       K+ +T+       P + +LYGV
Sbjct: 53  QKKRQKAGSLGKREAHEQRLDGICHSYRDNKNAHRQKFKNLYTNVTKFAINPLSEYLYGV 112

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IVGKEAV 110
           + + AAL +  R  F  L   +   +      +      K +   T DK    ++ K AV
Sbjct: 113 NPILAALESDRRGYFTRLLHHDTNDKDSNKLTILRLCKEKGIKIDTADKHQLNLITKSAV 172

Query: 111 HQGLALETAPLLSPTLDAVRNSQL--------------------------------LMVL 138
           H  + LE  PL  P +++++N  +                                 + L
Sbjct: 173 HNNMVLECKPLSIPEINSLQNVNIDTASFNVLQTDGITQWSKSEKFHNNERKKYPVGIYL 232

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DPHN+GAI+RSA     D +  +++   +   V+AK++SGA++++P   +      
Sbjct: 233 DEVTDPHNMGAIIRSAFFLGADFVALSRKNCAAIGPVVAKTSSGAVDYLPMFYVDKPLKF 292

Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETA 248
            +   + G+  +  S   SKK + + +          +  I L++G E  G+R   ++ +
Sbjct: 293 FELSQAEGWTVVSSSHGHSKKDVAKTLDLGDLHNMSHSMPILLVMGNEYSGIRTNLKQRS 352

Query: 249 ---TSMAHLHMPGIIKALNVSNAAAVAL 273
               ++  +     + +LNVS A  + L
Sbjct: 353 DFLVAIPQMTNNSTVDSLNVSVATGILL 380


>gi|15645178|ref|NP_207348.1| hypothetical protein HP0553 [Helicobacter pylori 26695]
 gi|2313669|gb|AAD07619.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 227

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   +   LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   IYGKQVIMHLLNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+  +    L+ +L  V+ +Q L+VL  + D  NIG I RSA      G+I     
Sbjct: 61  GNHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMGGVILDFAK 120

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E  +   K
Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQIEN-LSLKK 178

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 179 CALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|221194652|ref|ZP_03567709.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
 gi|221185556|gb|EEE17946.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
          Length = 292

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 101/217 (46%), Gaps = 17/217 (7%)

Query: 71  LLATKNALARLDW-----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           +L     L R  W     D N+    P+  +PPQ ++++VG +     L     P  +  
Sbjct: 67  ILQASEILERCGWHRCTQDQNV---IPLLVMPPQELERLVGYKITRGLLTAMERPQGASI 123

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            + +  ++ + VL+++ D  N+GA+ R+A A   D ++     +   +    + + G + 
Sbjct: 124 TETLGKARTVAVLENLVDVSNVGAVFRNAAALDVDAVLLAPHCADHLARRAIRVSMGTVF 183

Query: 186 HIPYIRISN---LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN----DKIALILGAEG 237
            +P+  +     +   +  +H  GF T  L+ +D+  PL  +IK      K AL  G+EG
Sbjct: 184 QVPWAHVPEELWVEGLMHMLHEEGFITTALALTDTAVPL-TDIKRTSSLGKHALFFGSEG 242

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL  +T E     A + M   + +LNV+ ++AVA +
Sbjct: 243 YGLDQRTIEACDQTAIIPMSHAVDSLNVAASSAVAFW 279


>gi|293372857|ref|ZP_06619231.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292632146|gb|EFF50750.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 147

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 66/138 (47%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD V D  N GAI R+    + D +I   R S S +A   K+++GAL  +P  R  NL 
Sbjct: 1   MLDGVTDVRNFGAIARTCECAAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLR 60

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             LQ +   GF+ +  +        +      + +I+GAE  G+  +          + M
Sbjct: 61  STLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPM 120

Query: 257 PGIIKALNVSNAAAVALY 274
            G I++LNVS AA + +Y
Sbjct: 121 LGTIESLNVSVAAGILIY 138


>gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 257

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 71/141 (50%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+M+L+ + DP N G ILR+       G++ TK      +  + +S  G++  +P++ + 
Sbjct: 110 LVMILEDLQDPGNAGTILRTGEGAGVSGVLLTKTCVDITNPKVIRSTMGSVYRMPFLYVE 169

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++    Q++     +T       K   +QE      A ++G EGKGL  +  ++A  +  
Sbjct: 170 SVVSLAQELKDRNIRTFAAHLHGKNSYDQESYTGGTAFLIGNEGKGLTDEAADSADCLIR 229

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + A+ + +Y
Sbjct: 230 IPMCGKVESLNAAMASGILMY 250


>gi|261197279|ref|XP_002625042.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239595672|gb|EEQ78253.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
          Length = 522

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 20/154 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  N+GAI+RSA  F  D II + R S   SAV+ K+++GA E+IP +  +N 
Sbjct: 319 LLLDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVVIKASAGAAENIPILTTTNP 378

Query: 196 TDALQ--KMHSWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237
           T+ L+  +M+ W               QT G S++   S++ +  ++      L+LG+E 
Sbjct: 379 TNFLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRRDVSTKLSEAPCILMLGSED 438

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +GL+   ++ A     + +PG I   +  + A V
Sbjct: 439 QGLQRSVRQQAD--GAVVIPGAITLSSAEDRAGV 470


>gi|169829514|ref|YP_001699672.1| putative tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
 gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
          Length = 254

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 20/251 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y K  +  +K R  S      + G H +  AL +   ++ Q++  +          +LP 
Sbjct: 14  YWKKLATTRKERERSG--EFIVEGFHLIEEALKH-KEQVLQIIVREGV--------DLPM 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVH----QGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +P+  +    +  +V KE       QG+ A+   P+L    +A  + + ++++D V DP
Sbjct: 63  LWPIDGIAIVEVTSVVAKEFAETETSQGVFAICKQPVLEE--EAKTSWRKVLLIDAVQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG ++R+A A   D +I  K  +   +    ++A G+  HIP +R   LT+ +  +  
Sbjct: 121 GNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAAQGSHFHIPVVR-EELTECVDFLQD 179

Query: 205 WGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G    G + D       +I      A+I+G EG G++P+          + + G  ++L
Sbjct: 180 QGVPVFGTALDEDAVPYSDIHHTGAFAIIMGNEGSGIQPQLLAMTDQNIIIPILGQAESL 239

Query: 264 NVSNAAAVALY 274
           NV+ A  + LY
Sbjct: 240 NVAVATGIVLY 250


>gi|260577991|ref|ZP_05845915.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
 gi|258603881|gb|EEW17134.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
          Length = 285

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL+ V    NDP N G ++R A A   D ++     +  +S   A++++G+L H+P  R 
Sbjct: 123 QLVSVPVETNDPGNAGTLIRVADAMGADAVVFAGETADPQSCKAARASAGSLFHVPVARS 182

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
           +N+ D L ++ + G Q +  ++D +  L+   EI     A + G E  GL  +    A  
Sbjct: 183 TNVKDVLGQLRAQGLQILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADL 242

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + + G  ++LN++ AA++ +Y
Sbjct: 243 RVSIPIRGRAESLNLATAASICMY 266


>gi|530425|emb|CAA83745.1| rRNA methylase [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 223

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 96/200 (48%), Gaps = 13/200 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHN 146
           +  V    +D+++    +HQG+  +         D + N        L++VLD ++DP+N
Sbjct: 25  INVVSENKLDQLLKTNELHQGIIAQIKDFNYTPFDELLNDLNTKEKSLVLVLDQIHDPYN 84

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAI+RS    + DGII   +     ++ + K++SG+   I   + +NL +A++ + + G
Sbjct: 85  FGAIIRSCSLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNG 144

Query: 207 FQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKA 262
           F      L+ +S    + +  N K  +I+G E KG+      T  S  ++++P    I +
Sbjct: 145 FWIYATNLNQNSTDMTKTQFAN-KSVVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDS 201

Query: 263 LNVSNAAAVALYITQNHFAK 282
            N S A ++  +   N+  K
Sbjct: 202 FNSSVACSIICFWIANYLNK 221


>gi|47458982|ref|YP_015844.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458310|gb|AAT27633.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 230

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 21/234 (8%)

Query: 49  LFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           L+L G +++  A+ N    +KIF        + + D+++ +     V+    QT++++V 
Sbjct: 3   LYLSGKNSIREAIENKVEIKKIF-------LINKKDYES-IYKDIIVEYTNLQTLNELV- 53

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            +  HQ +  E       +L+ +   +   +++LDH+ D  N G+ILRSA AF  + II 
Sbjct: 54  -KTNHQNIVAELKEFNYFSLENIIKDKADKVLILDHIQDSFNFGSILRSANAFGWNYIII 112

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             + S   + V  K +SG   ++  I+I +L  A+  +   GF   G   D       EI
Sbjct: 113 PSKRSVEINDVALKVSSGGFYNVKIIKIDSLIVAINFLKEHGFWIYGSMLDENSF---EI 169

Query: 225 KND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           KN      I LI+G E  GL      +      + M G +++LN + A  + L+
Sbjct: 170 KNAPINFPIGLIIGNEHSGLSKTMINSLDVKVKIMMSGTVQSLNAAVATGILLH 223


>gi|325283202|ref|YP_004255743.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
 gi|324315011|gb|ADY26126.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
          Length = 260

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VL  +  P N+GAILR+      DG++   R +   S  + +++ G++  +P +R  
Sbjct: 115 LLVVLHGLEKPGNVGAILRTVDGVGADGVLILGRGADPYSPNVIRASQGSVFTVP-LRQQ 173

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  +AL  +   GF  +  + D+ +   Q     ++AL+LG E +GL P+      S   
Sbjct: 174 DEAEALAWLEEEGFTLVACTPDAPRTFWQADLTGRVALLLGTEHEGL-PEHWRRHESAVS 232

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G   +LNV+ AAAV LY
Sbjct: 233 IPMRGQADSLNVATAAAVVLY 253


>gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
          Length = 262

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 68/130 (52%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VLD++ DP N+G I R+A A    GI+ +K      +  + +S  GA+  +P++ + +
Sbjct: 114 LVVLDNLQDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGAVFRMPFLYVED 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + ++++   G +T       +   ++E      A ++G EG GLR +  + A  +  +
Sbjct: 174 LPEKIKELQKEGIKTYAAYLRGENAYDEEDYTTGCAFLIGNEGNGLRDEVADCADCLIRI 233

Query: 255 HMPGIIKALN 264
            M G  ++LN
Sbjct: 234 PMEGEAESLN 243


>gi|304398699|ref|ZP_07380571.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
 gi|304353910|gb|EFM18285.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
          Length = 394

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 3/159 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +S  L        ++ L+ V++PHN+GAI+RS   F   G++     S  ES    ++A 
Sbjct: 236 VSEWLSQATTKDCVLALEDVSNPHNLGAIMRSCAHFGVKGLLVND-ASLLESGAAVRTAE 294

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G  EH+  I  +  ++ L+     G+  +  SS    PL Q    +K+ L+LG E +GL 
Sbjct: 295 GGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSHQGTPLAQAKLPEKMVLVLGQEREGLS 354

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQN 278
               +       +   G +++LNVS A  V  A +  QN
Sbjct: 355 DTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQN 393


>gi|302533437|ref|ZP_07285779.1| rRNA methylase [Streptomyces sp. C]
 gi|302442332|gb|EFL14148.1| rRNA methylase [Streptomyces sp. C]
          Length = 271

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 13/244 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           RDY  +     + R     E LF+  G   +  A +        LL+ K      D    
Sbjct: 16  RDYTGLTDVELRRRREPA-EGLFIAEGEKVIRRAKDAGYEMRSMLLSAKWVDVMRDVIDE 74

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRNSQLLMVLDHVND 143
           LP P  V  V P   +++ G   VH+G   +++  PL  PT  + + +++ + V++ VND
Sbjct: 75  LPAP--VYAVSPDLAERVTGYH-VHRGALASMQRKPL--PTAQELLASARRVAVMEAVND 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIGAI RSA A   D ++ +   +        K + GA+  +PY R+     +L  + 
Sbjct: 130 HTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKSLDTVR 189

Query: 204 SWGFQTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             GF+ + L+   K  P++       D++AL+LGAEG GL  +    A     + M   +
Sbjct: 190 EAGFKLLALTPHEKASPIDVAAPQTLDRVALMLGAEGDGLSTQALVAADEWVRIPMAHGV 249

Query: 261 KALN 264
            +LN
Sbjct: 250 DSLN 253


>gi|327538381|gb|EGF25053.1| rRNA methylase [Rhodopirellula baltica WH47]
          Length = 302

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 15/198 (7%)

Query: 90  PFPVKTVPPQTIDKIVGKEAV----HQG-LALETAPLLSPTLDAVRNS---QLLMVLDHV 141
           P    +VP   ID+ +GKE      H+G LA   +P + P L+  R+S    L + L  +
Sbjct: 94  PLIPDSVPVYLIDRELGKELAGYDFHRGVLAHGFSPTIEP-LEKFRDSPQSSLALALMGL 152

Query: 142 NDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +DP N+G++LRSA A    D ++  +  SP    V+  S +    H  Y R  N    L+
Sbjct: 153 SDPENVGSLLRSAAALGVRDILLGPQTISPMTRRVIRVSMASVFRHRFY-RFDNPVGQLR 211

Query: 201 KMHSWGFQTIG-LSSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            + + G  +I  L  D+  P   L   I++ +  L++G E  GL P+  E AT  + L M
Sbjct: 212 DLANAGIASIATLLDDTAIPLIDLSSAIQSKRRILMVGNEANGLPPEIAEAATHRSTLPM 271

Query: 257 PGIIKALNVSNAAAVALY 274
                +LNV  A+A+ LY
Sbjct: 272 RNDTDSLNVGVASAIFLY 289


>gi|260914536|ref|ZP_05921004.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260631327|gb|EEX49510.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 361

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 6/134 (4%)

Query: 111 HQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           H G+ +   +  PL LS  LD  R    L+ +D V + HN+G ++R++ AF   G+I  K
Sbjct: 188 HGGICMLVKKARPLTLSGYLDIPRKQDCLVFIDGVQNAHNLGGVIRTSAAFGVKGVIVEK 247

Query: 167 RYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEI 224
            ++ +  S+  A+ A G +E+I  +      +ALQ++   G+Q + L+S+ + KPL +  
Sbjct: 248 VFADNLNSSAAARVAEGGMEYIRVLETDYADNALQQLRKAGYQIVHLTSNKQAKPLAKLK 307

Query: 225 KNDKIALILGAEGK 238
              K+  ++  +GK
Sbjct: 308 FAQKVVFVVNEQGK 321


>gi|297379754|gb|ADI34641.1| RNA methyltransferase, TrmH family, group 3 [Helicobacter pylori
           v225d]
          Length = 227

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   +   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVIMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+       L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I 
Sbjct: 57  LAKGGNHQGVLARVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  +
Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-L 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|317179082|dbj|BAJ56870.1| hypothetical protein HPF30_0773 [Helicobacter pylori F30]
          Length = 227

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   +   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVLMRILNSYQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + K   HQG LA    PL  P L  V+ +Q L+VL  + D  NIG I RSA     DGII
Sbjct: 57  LAKGGNHQGVLAKVELPLALP-LKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGII 115

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                  +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  
Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|323699577|ref|ZP_08111489.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           ND132]
 gi|323459509|gb|EGB15374.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           desulfuricans ND132]
          Length = 253

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPH 145
           P K+V  + +D +      HQG+A   A L    L+ +    L      ++ LD V D  
Sbjct: 59  PYKSVSAKELDYMF--RGNHQGVAARCAALDYTPLEQLLEEALQAPLPLIVALDQVQDTG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--H 203
           N+G + R+  A    G+I  + +     A   +S++GAL  +P  ++ NL +A++    +
Sbjct: 117 NVGVLARTVYALGGAGLIVCQHHGAYIGAGAVRSSAGALNKLPVAKVGNLANAMKDCVNY 176

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            +      L+ DS      +++   + LILG E KG+RP   + A    H+       +L
Sbjct: 177 DYTLYCARLAPDSDNVYTADLQTPAV-LILGNEEKGIRPGVAKFAQHSLHIPFLREFDSL 235

Query: 264 NVSNAAAV 271
           NV+ A A+
Sbjct: 236 NVAQAGAI 243


>gi|118475710|ref|YP_891491.1| RNA methyltransferase [Campylobacter fetus subsp. fetus 82-40]
 gi|261886292|ref|ZP_06010331.1| RNA methyltransferase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|118414936|gb|ABK83356.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 226

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 3/161 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG   E       +L+ ++    L+VL  ++D  NIG+I+R+  A    G+I   + + 
Sbjct: 61  HQGFLAEVCEFEFASLNEIKKQDFLVVLYGLSDVGNIGSIVRTTYALGGGGVIMISKSAS 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            E  + A SA  A   +P   +S+    L ++   GF+  G  +  K P E +    K  
Sbjct: 121 MEGIIRASSA--AAYELPITLVSDGLSLLNELKQLGFKIYGSDAKGKNPSECKF-GKKTV 177

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L++G+EG+G+  K  E       ++M     +LNVS A  +
Sbjct: 178 LVMGSEGEGIPRKALEKCDENLGINMREGWDSLNVSVAFGI 218


>gi|42561043|ref|NP_975494.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492540|emb|CAE77136.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320852|gb|ADK69495.1| RNA methyltransferase, TrmH family [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 255

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 123/279 (44%), Gaps = 36/279 (12%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +S  K ++I  LKD       R HR+ +K+                 + G H +  A N+
Sbjct: 7   VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             + I  LL T   L  L  +  +P+   V  +      KI       Q  A+ + P  +
Sbjct: 45  --QIIKTLLGTSKTLEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S  G 
Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239
           L  +  +    L   + ++H   +  IG S  D  KPL + +K   +DK ALI+G EGKG
Sbjct: 157 LFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKPLSK-VKFDSDDKYALIIGNEGKG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 215 ISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253


>gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262]
 gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262]
 gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378]
          Length = 252

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R  +      + G H V  AL      + +LL +       +W   L
Sbjct: 13  KTWKKLQT--RKGRDKTG--TYLVEGFHLVEEALRQDGL-VLELLISSGVSVPEEW---L 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V  +  + I  ++      QG+      +  P +  +   +LL+V D V DP N+
Sbjct: 65  KGDYDVFEISSE-ISHLISDTMTEQGV-FAVVAISEPDMMLLYGKKLLLV-DAVQDPGNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  +  +   +  + +S  G+  HIP I+ ++L + +  +   G 
Sbjct: 122 GTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFEWVANLEEEGV 180

Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG +  D  K L    K + +AL++G EG G+  + Q+  +   ++ + G  ++LNV+
Sbjct: 181 PVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISEELQDRLSEKVYIPIYGDSESLNVA 240

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 241 VAAGILLY 248


>gi|119963510|ref|YP_947871.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119950369|gb|ABM09280.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 269

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 6/191 (3%)

Query: 89  HP-FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           HP  PV       +++I G   +H+G +A    P   P    + N+Q + VL+ + D  N
Sbjct: 74  HPDVPVYIGKASLLEEITGFH-LHRGAMAAMHRPAPVPLATLLANAQRIAVLEDIVDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RSA A   D ++ + R          + + G +  +P+ R+ +  D L ++   G
Sbjct: 133 VGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWPDHLAQLKEQG 192

Query: 207 FQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F    +  +D+   L+     K  K+AL+LG EG G+  +T         + M   + +L
Sbjct: 193 FTVAAMELTDNAVDLDDLAARKIPKLALVLGTEGAGMSEETLAAVDLAVKIPMRAGVDSL 252

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 253 NVAAASAVAFW 263


>gi|332702320|ref|ZP_08422408.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552469|gb|EGJ49513.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 262

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+ LD V DP N+GA++R+  A    G++  K ++        K+++GAL  +P  R++
Sbjct: 104 LLVALDQVLDPGNVGALVRTVYALGGAGLLVPKHHAARLGTGALKASAGALLRLPIARVT 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL  AL++    G+   G   +  + L          ++LG E KG+RP   +       
Sbjct: 164 NLARALEECAEAGYTIYGTQGEVGENLFFLEPRLPAVVVLGGEEKGMRPGVAKRCDFTLR 223

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + +     +LNV+ A A    +   HFA+
Sbjct: 224 IPLQHGFDSLNVAQAGA----LITGHFAR 248


>gi|255531956|ref|YP_003092328.1| TrmH family RNA methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255344940|gb|ACU04266.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter heparinus
           DSM 2366]
          Length = 254

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 9/246 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-------ALARLDWDANLP- 88
           N +     +  N F++G+  V  A+    ++I  +   +         L  L  + + P 
Sbjct: 3   NSRRPARGKESNEFIFGIRAVIEAIK-AGKEIESIYIQRGLTGGIIMELKALLKEVDAPV 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H  PV+ +   T+    G  AV   +  +    + P +     + L+++LD + D  N+G
Sbjct: 62  HNVPVEKLNRMTLKNHQGVIAVISAITFQKIEDIIPAIYEKGETPLVLILDGITDVRNMG 121

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A       I+   + S   +A   K+++GAL  IP  R  NL      +   G Q
Sbjct: 122 AIARTAACAGVHAIVVPSKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECGLQ 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +  +   +         A+++GAE +G+  +    A  +A + M G I +LNVS +
Sbjct: 182 IVACTEKTNDLIYVPDYTAPTAIVMGAEDEGISNELMRMANHLAKIPMIGEISSLNVSVS 241

Query: 269 AAVALY 274
           A + LY
Sbjct: 242 AGIILY 247


>gi|325978970|ref|YP_004288686.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178898|emb|CBZ48942.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 246

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 103/204 (50%), Gaps = 13/204 (6%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGK---EAVHQGLALETAPLLSPTLDAVRNS 132
           N     D+   + H   V  V P+ + ++      + +   LA+ + PL    L A R  
Sbjct: 48  NIFVLEDYADRVSHFSMVTYVTPEVLKELTDSKTPQGIIAELAMPSLPL--ADLKAGR-- 103

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++L+ V DP N+G ++R+A A   DG++ +++ +   +    +S  G+  H+P  R 
Sbjct: 104 --YLILEDVQDPGNVGTMIRTADAAGLDGVLISEKSADIYNQKTLRSMQGSHFHLPIWR- 160

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATS 250
           +++ +A QK+ +     I  ++ SK+ ++ +    N   AL++G EG G+     + A  
Sbjct: 161 TDVYEACQKLQNLDVPLIA-TTLSKESVDYKTVEHNGDFALVMGNEGNGISELMTKQADI 219

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +AH+ MPG  ++LNV+ A  + L+
Sbjct: 220 LAHIIMPGQAESLNVAVATGIVLF 243


>gi|222824411|ref|YP_002575985.1| rRNA methyltransferase, TrmH family [Campylobacter lari RM2100]
 gi|222539632|gb|ACM64733.1| conserved hypothetical protein, probable rRNA methyltransferase,
           TrmH family [Campylobacter lari RM2100]
          Length = 226

 Score = 69.3 bits (168), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 3/161 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG  +E       + ++++    +++L +++D  NIGAI+RSA A   DGII   +   
Sbjct: 61  HQGFLMEIDEFEFSSFESLKEKDFIVILYNISDVGNIGAIVRSAYALGADGIILVAKSVA 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            +  +  +++SGA   +  +   ++   + ++   GF  I  S+     +      DK  
Sbjct: 121 MDGVI--RASSGAALDMKIVLNDDILSMINELKQKGFY-IYASASGGSDIHTIKTKDKKV 177

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           LI+G+EG G+ PK  +       + M     +LNVS A A+
Sbjct: 178 LIMGSEGFGIAPKVLKKCDECVGIKMHNDFDSLNVSAAFAI 218


>gi|239917665|ref|YP_002957223.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|281413844|ref|ZP_06245586.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239838872|gb|ACS30669.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 280

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 103/198 (52%), Gaps = 16/198 (8%)

Query: 89  HP-FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           HP  PV T P   ++ + G   +H+G LA    P   P  D +  ++ +++ + V D  N
Sbjct: 82  HPDVPVFTGPDDVLEALTGFH-LHRGALAAMDRPAPRPLADVLAGARRVLIAEDVVDHTN 140

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSW 205
           +GA++RSAVA   D ++ T + +        + + G +  +P+ R+   + ++L  + + 
Sbjct: 141 LGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAESLPALRAA 200

Query: 206 GF---------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           GF         + +GL S   +PL      +++AL+LG EG G+RP+T     +   + M
Sbjct: 201 GFAVAALEVTERAVGLDSPEIEPLR---TAERLALVLGQEGPGVRPETLAQTDADVVIPM 257

Query: 257 PGIIKALNVSNAAAVALY 274
           P  + +LNV+ AAAVAL+
Sbjct: 258 PDGVDSLNVAAAAAVALW 275


>gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 257

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 72/140 (51%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           LM+LD++ DP N+G I+R+A      GII +K      +    +S  G++  +P++ + +
Sbjct: 111 LMILDNLQDPGNLGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIYRMPFLYVED 170

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + ++++     +        K   ++E      A ++G EG GLR +  E A     +
Sbjct: 171 LENTIEEVKKQDIKVYAAHLQGKNNYDEENYKTGCAFLIGNEGNGLRDEIAEKADIWVKI 230

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + A+++ ++
Sbjct: 231 KMHGEVESLNAAIASSILMF 250


>gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1]
 gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1]
          Length = 267

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 127 DAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSA 180
           D +R  Q  L++++D V DP N+G I+RSA A    G+I    T   Y+P       ++ 
Sbjct: 108 DIIRPDQKPLVVIVDGVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKT----LRAT 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L H+P I++S++ +AL+ + S G   +        P+ +      + +I+  EG G 
Sbjct: 164 MGSLFHLPVIQVSDVNEALEYLASIGVTLLVGEPAGGIPVFKANLQTPVGIIVANEGAGP 223

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNH 279
           R +          + MPG  ++LNV+ A ++ LY  I Q H
Sbjct: 224 REEIFRYNHQKITIPMPGCAESLNVAIATSIILYEAIRQRH 264


>gi|13472492|ref|NP_104059.1| hypothetical protein mlr2808 [Mesorhizobium loti MAFF303099]
 gi|14023238|dbj|BAB49845.1| mlr2808 [Mesorhizobium loti MAFF303099]
          Length = 265

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGL------ALETAPLLSPTLDAVRNSQLLMVLDHV 141
           P   PV  V    +D I G   +H+G+      A   AP   P LDA+ +  L++VL  +
Sbjct: 72  PADLPVYVVTSAVMDAIAGFH-MHRGILAIGRKATPQAP--GPLLDALPDQALVLVLVGI 128

Query: 142 NDPHNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
            +  N+G+I R+A AF  D ++  T    P     +  S   AL+ IP+   ++ +    
Sbjct: 129 ANHDNMGSIFRNAAAFGADAVLMDTTCCDPLYRKAIRVSVGAALK-IPFASFTDTSGFTA 187

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF+ + LS   +  +      +++AL LG EG+GL P+          + M    
Sbjct: 188 MLAERGFEQLALSPRGRTDIRDAKPAERLALYLGTEGEGL-PERLLARLQTVRITMSKGF 246

Query: 261 KALNVSNAAAVALYITQNHFA 281
            +LNV+ A+A+AL+    HF+
Sbjct: 247 DSLNVAAASAIALH----HFS 263


>gi|300781739|ref|ZP_07091593.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
 gi|300533446|gb|EFK54507.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
          Length = 273

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 12/201 (5%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P   PV  V  + + ++ G + +H+GL          ++  + N++ L+VL+ V D  NI
Sbjct: 70  PIDAPVYVVTRELLAEVAGYD-MHRGLIAVADRAEETSISEMLNARTLIVLEGVGDHENI 128

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK----MH 203
           GAI R+A     DG++     +        + + G +  +P+  +   +   Q+    + 
Sbjct: 129 GAIFRNAAGMDVDGVLLGAGTADPLYRRSVRVSMGHVLRLPFAHLDGTSTTWQRSLDQLR 188

Query: 204 SWGFQTIGLSSDSKKP-LEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHM 256
             GF+ + L+ DS+   L + + +D      K+AL++G EG GL           A + M
Sbjct: 189 EQGFRLVSLTPDSRAVHLAEALVDDTGHPYKKVALLVGGEGPGLTEHAMRATDVRARIPM 248

Query: 257 PGIIKALNVSNAAAVALYITQ 277
                +LNV+ +AA+A Y  Q
Sbjct: 249 AAGTDSLNVATSAAIAFYERQ 269


>gi|217033500|ref|ZP_03438929.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
 gi|216944025|gb|EEC23456.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
          Length = 227

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 10/226 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   +   LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   IYGKQVLMRILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             HQG LA    PL  P L  V+ +Q L+VL  + D  NIG I RSA     DG+I    
Sbjct: 61  GNHQGVLAKVELPLALP-LKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFA 119

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
              +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  +   
Sbjct: 120 KELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLK 177

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 178 KCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|260435563|ref|ZP_05789533.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
 gi|260413437|gb|EEX06733.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
          Length = 250

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 21/168 (12%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           L+  P + P LD       L+VLD + DP N+G +LR+A+A   + +       P  + V
Sbjct: 70  LDRLPTVPPELD------FLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAGVDPLGTKV 123

Query: 176 LAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTI------GLSSDSKKPLE 221
           L ++++GAL  +P+ R        IS L   L+++ S+G Q +         +D   P  
Sbjct: 124 L-RASAGALLQLPHQRFGPSEAMAISQLLQELKQLVSFGVQVVATLVPDATKADPPSPYW 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                   AL+LG EG GL P  Q   T    L     +++LNV++AA
Sbjct: 183 DLDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAA 230


>gi|308189702|ref|YP_003922633.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|319776886|ref|YP_004136537.1| rRNA methylase [Mycoplasma fermentans M64]
 gi|307624444|gb|ADN68749.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|318037961|gb|ADV34160.1| rRNA methylase [Mycoplasma fermentans M64]
          Length = 237

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 77/141 (54%), Gaps = 7/141 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD+V DP N+G I+R+A  F  D +I+   +   +   + ++  GAL  +  I+ +N
Sbjct: 96  VILLDNVQDPGNVGTIIRNAACFGFDTVISNVNFYNDK---VVRATQGALFQVSLIKENN 152

Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             D ++ +++ G+  +   L  DS K  E +I  +K+ LILG EG G+     +      
Sbjct: 153 NEDLIKVLNNEGYFIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNLYKYCDQ-- 210

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
            +++P   ++LNV+ A+ + L
Sbjct: 211 KVYIPIEFESLNVAVASGIIL 231


>gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 266

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 22/236 (9%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            F+ G+++V  AL++  +  + ++         D +      F +  +  +   KI    
Sbjct: 29  FFVEGLNSVKEALDSDFKVEYVVVGE-------DVEFEFKGDFKLIRIANKLFKKISDTV 81

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR- 167
              + +A+   P+     D ++   + ++ D+V DP N+G I+R+A AF  D + T    
Sbjct: 82  TPQKIMAIVRMPVYREE-DFIKEEGVYVIADNVQDPGNLGTIIRTADAFGADAVFTINNS 140

Query: 168 ---YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
              Y+P     + +++ G++ HIP I  +N  + L K+   G +        +K +  E+
Sbjct: 141 VDIYNPK----VLRASMGSIFHIPVIATAN--EVLYKLKGKGVKVFATHLKGEKFV-HEV 193

Query: 225 KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + DK  A ILG E +G+   + +       + M G  ++LNVS AAA+ LY +Q  
Sbjct: 194 EIDKGTAFILGNEARGV--SSLDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQ 247


>gi|317124864|ref|YP_004098976.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315588952|gb|ADU48249.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 271

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 5/181 (2%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           H  PV       I+++ G   +H+G LA    P L      V +++ ++VL+ + D  N+
Sbjct: 76  HDVPVFVGEHDVIERLTGFH-LHRGALASMQRPGLPEVASLVADARRIVVLEDIVDHTNV 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+ RSA A   D ++ T R +        + + G +  +P+ RI      +  + S GF
Sbjct: 135 GAVFRSAAALGVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIDPWPGGMAVLQSHGF 194

Query: 208 QTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               L+ SD    L+  +     K+A++LGAEG GL   T   A  +  + M G + +LN
Sbjct: 195 TVAALALSDDAVALDVLEAAPPTKVAVVLGAEGDGLGGTTVAAADVVVRIPMAGGVDSLN 254

Query: 265 V 265
           V
Sbjct: 255 V 255


>gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
 gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
          Length = 254

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            + +  M   GF   G   ++    L++  K +  A+I+G EG+G+  +         ++
Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|299535511|ref|ZP_07048832.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
           ZC1]
 gi|298728711|gb|EFI69265.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
           ZC1]
          Length = 254

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 119/260 (45%), Gaps = 26/260 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y K  +  +K R  S      + G H V  AL N + ++ Q++  +          +LP 
Sbjct: 14  YWKKLATTRKERERSG--EFLVEGFHLVEEALKNKN-QVLQIIVREGI--------DLPM 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVH----QGL-ALETAPLLSPTLDAVRNS-QLLMVLDHVND 143
            +P+  +    +   V KE       QG+ A+   P+L   +D V  + + ++++D V D
Sbjct: 63  LWPIDDIAIVEVSTAVAKEFAETETSQGVFAVCKQPVL---VDNVMTTWRKVLLIDAVQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIG ++R+A A   D +I  K  +   +    ++A G+  HIP +R  +L + +  + 
Sbjct: 120 PGNIGTMIRTADAADLDAVILGKGCADLYNPKTLRAAQGSHFHIPVVR-GDLAEWIDILQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G    G + D +     +I+     A+I+G EG G++P+          + + G  ++
Sbjct: 179 DQGVPVFGTALDEEAVPYSDIQHTGAFAIIMGNEGSGIQPQLLAMTDQNMIIPLFGQAES 238

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ A  + LY     FAK
Sbjct: 239 LNVAVATGIVLY----GFAK 254


>gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
 gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
          Length = 254

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            + +  M   GF   G   ++    L++  K +  A+I+G EG+G+  +         ++
Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
 gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
          Length = 254

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            + +  M   GF   G   ++    L++  K +  A+I+G EG+G+  +         ++
Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|207092282|ref|ZP_03240069.1| hypothetical protein HpylHP_04814 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 227

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 16/229 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   V   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVVMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           + K   HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I 
Sbjct: 57  LAKGGNHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVIL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                 +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S       E  +
Sbjct: 117 DFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQAEN-L 174

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 175 SLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|262091797|gb|ACY25385.1| rRNA methylase [uncultured actinobacterium]
          Length = 259

 Score = 68.9 bits (167), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 42/194 (21%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +T+ PQ I            LA+ T P ++    A+  S+  + L  V DP N G ILRS
Sbjct: 88  ETITPQGI------------LAVCTIPQITFDSIALNGSRRFIYLSEVQDPGNAGTILRS 135

Query: 154 AVAFSCDGIITT----KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW---- 205
           A AF+ D +IT+      YSP     + +S +G+L HIP               SW    
Sbjct: 136 ADAFAMDAVITSPGSVDMYSPK----VVRSTAGSLWHIPV------------FESWRLEE 179

Query: 206 ----GFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               G     L ++  K L Q ++  D +A + G E +GL       +  +  + MPG  
Sbjct: 180 LLNLGLNAFSLGAEGSKSLSQYQMSGDTLA-VFGNEARGLSTAQNADSIDVVSIPMPGNA 238

Query: 261 KALNVSNAAAVALY 274
           ++LN+S AA++ +Y
Sbjct: 239 ESLNLSAAASIVMY 252


>gi|332673651|gb|AEE70468.1| RNA methyltransferase [Helicobacter pylori 83]
          Length = 227

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   +   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVLMRILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + K   HQG LA    PL  P L  V+ +Q L+VL  + D  NIG I RSA     DGII
Sbjct: 57  LAKGGNHQGVLAKVELPLALP-LKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGII 115

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                  +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  
Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|238809673|dbj|BAH69463.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 249

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 77/141 (54%), Gaps = 7/141 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD+V DP N+G I+R+A  F  D +I+   +   +   + ++  GAL  +  I+ +N
Sbjct: 108 VILLDNVQDPGNVGTIIRNAACFGFDTVISNVNFYNDK---VVRATQGALFQVSLIKENN 164

Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             D ++ +++ G+  +   L  DS K  E +I  +K+ LILG EG G+     +      
Sbjct: 165 NEDLIKVLNNEGYFIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNLYKYCDQ-- 222

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
            +++P   ++LNV+ A+ + L
Sbjct: 223 KVYIPIEFESLNVAVASGIIL 243


>gi|332663829|ref|YP_004446617.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332332643|gb|AEE49744.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 247

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 13/240 (5%)

Query: 46  PENL--FLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           PE L   +YG H V  A+ +  P  K+      +    +        +  P + VP + +
Sbjct: 2   PEKLSEIVYGRHPVVDAIKSGWPVDKVVLQQGIRGEFEKEIRHLTKEYEVPFQVVPKERL 61

Query: 102 DKIVGKEAVHQGLALETAPL----LSPTLDAV-RNSQ--LLMVLDHVNDPHNIGAILRSA 154
           +K+ G    HQG+    +P+    L   L +V  N Q  L+++LD + D  N GAI RSA
Sbjct: 62  NKLAGGN--HQGVVAFISPIPFQRLEDILPSVFENGQNPLIVLLDGITDVRNFGAIARSA 119

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    ++ + + S   +A   K+++GAL  IP  R  ++  A++ +   G +      
Sbjct: 120 EVFGAHALVISSKKSAQVNAEAVKTSAGALTLIPVCREKSMVGAIELLKLSGVKVYVSDL 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +        +AL++G+E +G+ P     A     +   G   +LN S AA + LY
Sbjct: 180 AATASIAALDWTIPVALVIGSESEGITPAVAALADDRFLIPQLGQTDSLNASVAAGIILY 239


>gi|295101732|emb|CBK99277.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
          Length = 275

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 8/191 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + + ++ G E     L     P   P  +  +N++ + VL+ + D  N+GAI 
Sbjct: 80  PVYTADREMLAELTGFELTRGVLCAFRRPAPRPVEELCKNARRVAVLEGIVDSTNVGAIF 139

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-----TDALQKMHSWG 206
           RSA A + D ++              + + G +  +P+ ++           +  +HS G
Sbjct: 140 RSAAALNMDAVLINPSCCDPLCRRAVRVSMGTVFQVPWGQLGETPADWPEKGMDILHSLG 199

Query: 207 FQTIGLS-SDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+T  ++ SD    +  EQ  K  K+A++LG EG GL   T  +      + M   + +L
Sbjct: 200 FKTAAMALSDRSVSIDDEQLAKEPKLAIVLGTEGDGLAAGTIASCDYTVKIPMSHGVDSL 259

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 260 NVAAASAVAFW 270


>gi|258404224|ref|YP_003196966.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
           retbaense DSM 5692]
 gi|257796451|gb|ACV67388.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
           retbaense DSM 5692]
          Length = 244

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 17/189 (8%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQL--LMVLDHVNDP 144
           + +P   +DK++   A HQG+A   A + SP        L+ V ++ L  L+ LD V DP
Sbjct: 52  QILPRAQLDKLI--SAHHQGIA---ARVFSPGFVDPQVLLETVADAPLPLLIALDQVQDP 106

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG + R+  +    G++  K  S        K++SGAL ++P  +++NL   L++   
Sbjct: 107 GNIGTLARTLYSLGGAGLVLPKNRSAPLGGGALKASSGALNYLPVAQVTNLGRFLEQATQ 166

Query: 205 WGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                I  GL+ DS    +  +    + L+LG E KG+RP   +   ++  + +     +
Sbjct: 167 AALPVIGTGLTPDSLSVYKARLSTPAV-LVLGNEHKGMRPGVAKKCETVVSIPLQRQFDS 225

Query: 263 LNVSNAAAV 271
           LNV+ A A+
Sbjct: 226 LNVAQAGAI 234


>gi|123966693|ref|YP_001011774.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123201059|gb|ABM72667.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 296

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 16/162 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191
            ++VLD + DP N+G + R+A+A   + ++     +P    VL +++SG++ H+P+ R  
Sbjct: 128 FMLVLDRIQDPGNMGNLFRTALAAGVNKVLLAGGANPLGQKVL-RASSGSVFHLPFKRFD 186

Query: 192 ------ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDK-IALILGAEGKG 239
                 I++L  +L +    GFQ I  SS +K P +      EI   K  ALILG EG G
Sbjct: 187 GGEEEIINSLLTSLDQFSKNGFQIISTSSHNKNPDKSQKPYWEIDWSKPTALILGNEGNG 246

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  + QE  T    +    ++++LNV+   AV L + +   A
Sbjct: 247 IHERIQEAFTETITIPHSELVESLNVA-CVAVPLLLERKRVA 287


>gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
 gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
          Length = 254

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            + +  M   GF   G   ++    L++  K +  A+I+G EG+G+  +         ++
Sbjct: 171 AEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQGVSQEILSLTDQNVYI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G  ++LNV  AA + LY    HF+
Sbjct: 231 PMKGNAESLNVGVAAGIVLY----HFS 253


>gi|313141621|ref|ZP_07803814.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313130652|gb|EFR48269.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
          Length = 244

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 104/246 (42%), Gaps = 15/246 (6%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M   N+   + ++ + + +YG   V   L     KI  +   K      + D    +   
Sbjct: 1   MSKINKYKNNENRIKLMVVYGKRIVELILAQHQEKIINIYLAK------EVDKTFFNRLK 54

Query: 93  VKTVPPQTID----KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               P   +D    + + K   HQG  LE   L       +++   ++VL  ++D  N+G
Sbjct: 55  KTQKPILRLDAKKAQAMAKGGNHQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLG 114

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ RSA     DGI+    ++  +  VL +++SGA+  +P+  + N  D   ++    F 
Sbjct: 115 SLFRSAYGLGVDGIVICGIHNFKQEGVL-RASSGAMLGMPFCVVYNPLDVFHELKQADFV 173

Query: 209 TIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +G S   +  P+  E K    AL+LG EG+GL  K          + M     +LNV  
Sbjct: 174 LLGTSLQGQNLPISLESKK---ALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGV 230

Query: 268 AAAVAL 273
           A A+ +
Sbjct: 231 AGAILI 236


>gi|269218391|ref|ZP_06162245.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212250|gb|EEZ78590.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 285

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLS---PTLDAVRNS-QLLMVLDHVNDPH 145
            PV     + + +I G   +H+G +A    P L+     L+AV +    ++VL+++ D  
Sbjct: 82  IPVYVCDEEKLQEIAGFH-LHRGAIAAMNRPALADPRAMLEAVGSGPARIVVLENLVDHT 140

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RSA A   D +  T   +        + + G +  +P+ RI     + + +   
Sbjct: 141 NVGAIFRSAAALGVDAVFVTSDCADPLYRRSVRVSMGTVFQVPWTRIDGWPRSAKMLSEC 200

Query: 206 GFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           G+ T  L+ +D    L+          K+ KIA+ILGAEG GLR  T         + M 
Sbjct: 201 GYTTAALALTDDAVALDAFSRLEVCSAKDSKIAIILGAEGDGLRDSTIAAVDHSVVIPMA 260

Query: 258 GIIKALNVSNAAAVALY 274
           G + +LNV+ A AVA +
Sbjct: 261 GDVDSLNVAAAMAVACW 277


>gi|258512124|ref|YP_003185558.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478850|gb|ACV59169.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 256

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKR-YSPSESAVLAKSASGALEH 186
           R S + + ++ V+D HN  AILRSA AF      +I  K+ + PS+         GA + 
Sbjct: 45  RTSYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFHPSKGVT-----QGAHKW 99

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   R+ ++  A+  +H+ GFQ       +  +P++        A++ G E  G+ P+ +
Sbjct: 100 LTLQRMPDIGRAIDALHARGFQVYATDLGEGAQPIDAVDLARPTAILFGNEKDGVSPEAR 159

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A    ++ M G +++ NVS AAA+ALY
Sbjct: 160 ERADGRFYIPMAGFVQSFNVSVAAAIALY 188


>gi|188527602|ref|YP_001910289.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
 gi|188143842|gb|ACD48259.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
          Length = 227

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 8/225 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG   +   LN+   K+ ++  +K    +L +      P+   V     Q++     K 
Sbjct: 5   IYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSL----AKG 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I     
Sbjct: 61  GNHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAK 120

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  +   K
Sbjct: 121 ELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLKK 178

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 179 CTLFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|312864040|ref|ZP_07724276.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
           F0396]
 gi|311100453|gb|EFQ58660.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
           F0396]
          Length = 245

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 13/187 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           VK V P+ + ++   +   QG+  E A       D++    LL  L+ V DP N+G ++R
Sbjct: 65  VKLVSPEVLKELCETQT-PQGIVAEVAKQTQALPDSLSGKYLL--LEDVQDPGNVGTMIR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210
           +A A   DG+  + + +   +    +S  G+  H+P  R  I  + +  +K       T 
Sbjct: 122 TADAADYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPILEMVETCKKQDLPVLATT 181

Query: 211 --GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              +S D K      +K D   AL++G EG+G+  +  E+A  + H++MPG  ++LNV+ 
Sbjct: 182 LSEVSVDYKA-----VKTDGNFALVMGNEGQGISKEMAESANQLVHINMPGQAESLNVAV 236

Query: 268 AAAVALY 274
           AA + ++
Sbjct: 237 AAGILMF 243


>gi|312868681|ref|ZP_07728874.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
 gi|311095795|gb|EFQ54046.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
          Length = 289

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALE---TAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNI 147
           P+  +  Q I ++ G   +   LA       P L+    ++ N    + +L+ V +P NI
Sbjct: 88  PIYVINDQQIRQLAGYNLLRGALAAMYRVQRPNLASLFKSIPNPHPRIAILERVVNPANI 147

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHS 204
           GAI RSA A   DG+I T   +       ++ + G +  IP+  I   T   + +  +H 
Sbjct: 148 GAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQIPWTYIDAKTWHMEGIDLLHR 207

Query: 205 WGFQT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +G+QT  + L  ++ +  +  + K DK+A+ILG+EG GL  +T   +     + M   + 
Sbjct: 208 FGYQTAAMALRHNTIRIDDPRLAKLDKLAIILGSEGPGLEEQTITQSDFTIKIPMAVGVD 267

Query: 262 ALNVSNAAAVALY 274
           +LNV+ A+A+A +
Sbjct: 268 SLNVAAASALAFW 280


>gi|317180325|dbj|BAJ58111.1| hypothetical protein HPF32_0529 [Helicobacter pylori F32]
          Length = 227

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   V   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVVMHILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + K   HQG LA    PL  P L  ++ +Q L+VL  + D  NIG I RSA     DG+I
Sbjct: 57  LAKGGNHQGVLAKVELPLALP-LKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI 115

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                  +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  
Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|255008645|ref|ZP_05280771.1| putative rRNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146380|ref|ZP_07808573.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135147|gb|EFR52507.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 269

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 6/187 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + +  + G       L     P+L    +  R ++ ++++D V D  NIGAI
Sbjct: 78  IPVYTGDRELLATLTGYVLTRGVLCAMRLPVLRSMEEVCRRARRIVIIDGVVDTTNIGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++  +      +    + + GA+  +P+   + L   L  +  WGF+T+
Sbjct: 138 FRSAAALGIDAVLLMRNSCSPLNRRAIRVSMGAVFLVPW---TWLDGPLSDLARWGFRTV 194

Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++ +D+   ++  +     K+A+++G EG GL  +    A  +  + M   + +LNV+ 
Sbjct: 195 AMALTDNSISIDDPVLTTEPKLAIVMGTEGDGLSHERIAEADYVVRIPMSHGVDSLNVAA 254

Query: 268 AAAVALY 274
           A+A+A +
Sbjct: 255 ASAIAFW 261


>gi|55820344|ref|YP_138786.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|116627180|ref|YP_819799.1| rRNA methyltransferase [Streptococcus thermophilus LMD-9]
 gi|55736329|gb|AAV59971.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|116100457|gb|ABJ65603.1| rRNA methylase [Streptococcus thermophilus LMD-9]
 gi|312277659|gb|ADQ62316.1| RRNA methyltransferase [Streptococcus thermophilus ND03]
          Length = 245

 Score = 68.9 bits (167), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 13/187 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           VK V P+ + ++   +   QG+  E A       D++    LL  L+ V DP N+G ++R
Sbjct: 65  VKLVSPEVLKELCETQT-PQGIVAEVAKQTQALPDSLSGKYLL--LEDVQDPGNVGTMIR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210
           +A A   DG+  + + +   +    +S  G+  H+P  R  I  + +  +K       T 
Sbjct: 122 TADAADYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPILEMVETCKKQDLPVLATT 181

Query: 211 --GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              +S D K      +K D   AL++G EG+G+  +  E+A  + H++MPG  ++LNV+ 
Sbjct: 182 LSEVSVDYKA-----VKTDGNFALVMGNEGQGISKEMAESANQLVHINMPGQAESLNVAV 236

Query: 268 AAAVALY 274
           AA + ++
Sbjct: 237 AAGILMF 243


>gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4]
          Length = 272

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 3/179 (1%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             I+ I G       LA    P L    + + N++ + +L+ V +P N+GAI RSA A  
Sbjct: 88  NVINNITGFNLTRGVLAACRRPALPDPKELLANTKRIAILEDVMNPTNVGAIFRSAAALG 147

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSK 217
            + +  T   +       A+ + G +  +P+      +D +  +H  GF+ + ++  ++ 
Sbjct: 148 VEAVFLTHPSADPFYRRAARVSMGTVFQVPWTYFYKDSDYIGALHQAGFKVVSMALKENA 207

Query: 218 KPLEQ-EIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            PL   E+KN DK+A++ G E  G++  T   +  +  + M   + +LNV+ A+AV  +
Sbjct: 208 IPLSAPELKNQDKLAIVFGTESTGIKDDTISKSDYVTIIPMYNEVDSLNVAAASAVTFW 266


>gi|85059886|ref|YP_455588.1| putative methyltransferase [Sodalis glossinidius str. 'morsitans']
 gi|84780406|dbj|BAE75183.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 367

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A +    ++ L+ V++PHN+GA+LRS   F  + ++ +   +  +S    ++A G  EH+
Sbjct: 214 AAQQQDCVLALEQVSNPHNLGAMLRSCAHFGVNSVMVSD-SALLDSGAAVRTAEGGAEHV 272

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             I+  ++   LQ+    G+  + L+ +S   L       +  L+LG EG  L       
Sbjct: 273 KAIKCDDVLQDLQRFQRAGYTVVTLAGNSGTSLSTVKMPARTVLVLGEEGSALSEAVLSQ 332

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           A     ++  G + +LNVS +A + L  +  QNH
Sbjct: 333 ADIAVTINGSGRVPSLNVSVSAGILLAEWWRQNH 366


>gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
 gi|158449339|gb|EDP26334.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
          Length = 272

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++LD + DP N+G I RSA A    G+I    +   Y+P     + +S  GA+  +P+++
Sbjct: 123 LILDTIQDPGNMGTIFRSAEAAGITGVIIGPGSCDPYNPK----VVRSTMGAIFRVPFVQ 178

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +L   +  +   G    G   D ++  + E   DKIA ++G EG GL     +TA  +
Sbjct: 179 SDDLIYTIDALKRKGVLIYGAHLDGEELYDTEFP-DKIAFLIGNEGNGLSKAVSDTADRL 237

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M G +++LN + +A +  Y
Sbjct: 238 LRIPMEGKVESLNAAISATLLSY 260


>gi|311894893|dbj|BAJ27301.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 267

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 6/179 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           PV  V P   +++ G   VH+G   ++E  PL     + +  ++ + VL+ + D  N+GA
Sbjct: 78  PVHLVDPVLAERVTGYH-VHRGALASMERKPLPGAP-EVLAGARRVAVLEGLVDHTNLGA 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA A   D ++ +   +        K++ GA+  +PY R+    DAL  +   GF+ 
Sbjct: 136 IFRSAAALGMDAVLLSPDCADPLYRRAVKTSMGAVFSVPYARLDPWPDALGAVRDAGFEL 195

Query: 210 IGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           + L+    +       +   K AL+LGAEG GL PK    A     + M   I +LNV 
Sbjct: 196 LALTPSGAEDFTAARPHLLPKAALMLGAEGDGLTPKALAAADQRVRIPMAHGIDSLNVG 254


>gi|308061885|gb|ADO03773.1| RNA methyltransferase [Helicobacter pylori Cuz20]
          Length = 227

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   +   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVIMHILNSRPEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + K   HQG LA    PL  P L  V+ +Q L+VL  + D  NIG I RSA     DG+I
Sbjct: 57  LAKGGNHQGVLAKVELPLAVP-LKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVI 115

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                  +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  
Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|296875965|ref|ZP_06900024.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
 gi|296433040|gb|EFH18828.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
          Length = 248

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 115/249 (46%), Gaps = 15/249 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K  +  +QK   T   ++  + G H    A+ N + +I Q+   +  L R++   N+   
Sbjct: 13  KNAKKLHQKKYRT---DSYLIEGWHLFEEAVENQA-EIRQVFVLEAYLDRVENIQNV--- 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
               TV    I  ++      QG+  E   L  P L      + L  L+ V DP N+G +
Sbjct: 66  ----TVVTSEILSLLADSKTPQGIVAEIL-LEQPVLPYQLQGRYLY-LEDVQDPGNVGTM 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A   DG++ +K  +   S    +S  G+  H+P  ++    +  ++        +
Sbjct: 120 IRTADAAGFDGVMLSKASADLYSLKTLRSMQGSHFHLPIWKLDR-EELFERASQSNLAVL 178

Query: 211 GLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             + S++     Q  + D++ L++G EGKG+ P+    A  + H+ MPG  ++LNV+ AA
Sbjct: 179 ATTLSEASIDYRQLPQIDQLILVMGNEGKGISPEMATRADQLVHITMPGRAESLNVAVAA 238

Query: 270 AVALYITQN 278
            + ++  +N
Sbjct: 239 GILMFYLRN 247


>gi|317009469|gb|ADU80049.1| RNA methyltransferase [Helicobacter pylori India7]
          Length = 227

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 91  FPVKTVPPQTID------KIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           F +K   P  I       + + K   HQG LA    PL  P L  ++ +Q L+VL  + D
Sbjct: 37  FALKKACPNIIKVDNKKAQSLAKGGNHQGVLAKVELPLALP-LKEIKKAQKLLVLCGITD 95

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             NIG I RSA     DG+I       +   ++ +S+ G +  +P+  + N  D + ++ 
Sbjct: 96  VGNIGGIFRSAYCLGMDGVILDFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELK 154

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + GF  +G S      +E  +   K AL LG+E +GL  K      ++  + M     +L
Sbjct: 155 TSGFLCLGASMQGSSQVEN-LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMQRDFDSL 213

Query: 264 NVSNAAAVAL 273
           NVS AA + +
Sbjct: 214 NVSVAAGILM 223


>gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
           14600]
 gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
           14600]
          Length = 278

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 69/141 (48%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LLM+L+++ DP N+G I R+A      GI+ ++      S  + +S  G+L  +P++   
Sbjct: 129 LLMILENIQDPGNLGTIFRTAEGAGATGILMSRDTVDLFSPKVIRSTMGSLYRVPWLITE 188

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L+  L++    G         +K   +Q         ++G EG GLR  T   A +   
Sbjct: 189 DLSSYLKRARESGVCLYAADLQAKCDYDQADCRTACGFLIGNEGSGLRDATAALAEARIR 248

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + AA + +Y
Sbjct: 249 IPMGGRLESLNAAMAAGILMY 269


>gi|77405800|ref|ZP_00782884.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
 gi|77408463|ref|ZP_00785201.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
 gi|77172905|gb|EAO76036.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
 gi|77175587|gb|EAO78372.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
          Length = 229

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VL+ V DP N+G ++R+A A + D +  +++ +   +    +S  G+  H+P  R+  
Sbjct: 87  FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 145

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   +    + G   I  + S+     +   K D  ALI+G EG+G+     E A  +AH
Sbjct: 146 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDYFALIMGNEGQGISKTMTEEADVLAH 205

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA V ++
Sbjct: 206 IEMPGQAESLNVAVAAGVVIF 226


>gi|294786867|ref|ZP_06752121.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|294485700|gb|EFG33334.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
          Length = 302

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 25/209 (11%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150
           PV     + + ++ G   +H+G        + PT++ V + ++ + VL+++ D  N+GAI
Sbjct: 83  PVFVASAELLHRLTGYR-LHRGALSAMHRWVLPTVEEVCKEARRVAVLENIVDYTNVGAI 141

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKMHS 204
           +RSA A   D ++ T   +       A+ + G +  +P+ RI            +  +H 
Sbjct: 142 MRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGDDSHAWPHPGIDLLHR 201

Query: 205 WGFQTIGLS-----------------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            GF T+ ++                  D+     ++ + DK+ALI G EG GL  KT  +
Sbjct: 202 LGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVDKVALIFGTEGDGLSRKTLAS 261

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 + M   + +LNV+ ++AVA Y T
Sbjct: 262 TDLTVKIPMSHQVDSLNVAASSAVAFYAT 290


>gi|77414383|ref|ZP_00790538.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
 gi|77159573|gb|EAO70729.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
          Length = 229

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VL+ V DP N+G ++R+A A + D +  +++ +   +    +S  G+  H+P  R+  
Sbjct: 87  FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 145

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   +    + G   I  + S+     +   K D  ALI+G EG+G+     E A  +AH
Sbjct: 146 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDHFALIMGNEGQGISKTMTEEADVLAH 205

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA V ++
Sbjct: 206 IEMPGQAESLNVAVAAGVVIF 226


>gi|212704886|ref|ZP_03313014.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
 gi|212671728|gb|EEB32211.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
          Length = 261

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD V DP N+G + R+  A    G+I  +  S        ++A+GALE +P  R++
Sbjct: 112 LVVALDQVQDPGNVGTLCRTLYALGGAGVILPRHNSAYLGPAAHRAAAGALERLPVARVT 171

Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           NL  AL +    GF     G   D+    E  ++   + L+LG E KGLRP   +    M
Sbjct: 172 NLAHALDEAEEAGFSIYGAGCGPDAADAFEHAMQLPAV-LVLGNEDKGLRPGVAKRCGRM 230

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
             + +     +LNV+ A A+ L + 
Sbjct: 231 LRIPLARKFDSLNVAQAGAILLGLA 255


>gi|42561476|ref|NP_975927.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492975|emb|CAE77569.1| rRNA Methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
          Length = 244

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 116/253 (45%), Gaps = 35/253 (13%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVK-------TVPPQT 100
            +YG H V           F+LL     + +  W  D  + + F +K        V    
Sbjct: 5   LIYGKHVV-----------FELLKKHQNMVKEIWVKDLKILNEFDLKKTKIKVNVVSENK 53

Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D+++  +  HQG+  +      +P  + +     +   L+++LD ++D +N GAI+RS 
Sbjct: 54  LDQLLETQTQHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHDSYNFGAIIRSC 113

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIG 211
              + DGII   +     ++ + K++SG+   I   + +NL +A++ + +   W + T  
Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYAT-N 172

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAA 269
           L+ +S    + +  N K A+I+G E KG+      T  S  ++++P    I + N S A 
Sbjct: 173 LNQNSTDMTKIDFAN-KTAVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVAC 229

Query: 270 AVALYITQNHFAK 282
           ++  +   N+  K
Sbjct: 230 SIICFWIANYLNK 242


>gi|55822234|ref|YP_140675.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|55738219|gb|AAV61860.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
          Length = 245

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 13/187 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           VK V P+ + ++   +   QG+  E A       D++    LL  L+ V DP N+G ++R
Sbjct: 65  VKLVSPEVLKELCETQT-PQGIVAEVAKQTQALPDSLSGKYLL--LEDVRDPGNVGTMIR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210
           +A A   DG+  + + +   +    +S  G+  H+P  R  I  + +  +K       T 
Sbjct: 122 TADAADYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPILEMVETCKKQDLPVLATT 181

Query: 211 --GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              +S D K      +K D   AL++G EG+G+  +  E+A  + H++MPG  ++LNV+ 
Sbjct: 182 LSEVSVDYKA-----VKTDGNFALVMGNEGQGISKEMAESANQLVHINMPGQAESLNVAV 236

Query: 268 AAAVALY 274
           AA + ++
Sbjct: 237 AAGILMF 243


>gi|77412543|ref|ZP_00788838.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           CJB111]
 gi|77161411|gb|EAO72427.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           CJB111]
          Length = 247

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VL+ V DP N+G ++R+A A + D +  +++ +   +    +S  G+  H+P  R+  
Sbjct: 105 FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 163

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   +    + G   I  + S+     +   K D  ALI+G EG+G+     E A  +AH
Sbjct: 164 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDYFALIMGNEGQGISKTMTEEADVLAH 223

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA V ++
Sbjct: 224 IEMPGQAESLNVAVAAGVVIF 244


>gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
 gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
          Length = 251

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 116/251 (46%), Gaps = 16/251 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           + +KK+    +K R  +    LFL  G H V  A+ + +  + +L+  +       W+  
Sbjct: 13  KQWKKL--LTKKGRDET---GLFLLEGFHLVEEAIKS-NAPLVELIVDERTAVPPGWNVT 66

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV T+  + + K +      QG+A      LS  L+ V+ +   +++D V DP N
Sbjct: 67  ---GVPV-TIVTEAVMKAISSTETPQGIA-AVCRQLSTELEGVKTA---LLIDAVQDPGN 118

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ++R+A A   D +I  +  +   +  + ++  G+L H+P ++  +L   + +    G
Sbjct: 119 LGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLPVVK-GDLAQWIARFKEQG 177

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G + ++        ++   AL+ G EG G+RP      T   ++ + G  ++LNV+
Sbjct: 178 IPVYGTALENAVDYRTVPQSPSFALLFGNEGSGVRPDLLRLTTENVYIPIYGRAESLNVA 237

Query: 267 NAAAVALYITQ 277
            AA + LY  Q
Sbjct: 238 VAAGILLYSLQ 248


>gi|148241713|ref|YP_001226870.1| rRNA methylase [Synechococcus sp. RCC307]
 gi|147850023|emb|CAK27517.1| rRNA methylase [Synechococcus sp. RCC307]
          Length = 279

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNI 147
           P++ V P+ +  +   ++    +AL   P  +P L A    Q    LL+ LD V DP N+
Sbjct: 77  PLQPVSPEVLQAMASTDSPDGVIALLPHP--APGLQAPSWPQAKSPLLLALDRVQDPGNL 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+A+A   D +       P +  VL  SA  ALE +   R+ +L   L      G 
Sbjct: 135 GTILRTALAAGVDRVWLGGGADPWQPKVLRASAGAALE-LSMQRLDDLAPVLAMARERGV 193

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVS 266
                  D  +P  Q   +    L+LG EG GL P   Q+  T++   H    +++LNV+
Sbjct: 194 ACYAALRDGGQPYWQPDWHQPSLLLLGNEGSGLDPALVQQGVTALTIPHH-AAVESLNVA 252

Query: 267 NAAAVALY--ITQNH 279
            AA V L   + Q H
Sbjct: 253 VAAGVLLLERVRQGH 267


>gi|22537746|ref|NP_688597.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76788278|ref|YP_330224.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|76799024|ref|ZP_00781219.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           18RS21]
 gi|22534636|gb|AAN00470.1|AE014264_25 RNA methyltransferase, TrmH family [Streptococcus agalactiae
           2603V/R]
 gi|76563335|gb|ABA45919.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|76585610|gb|EAO62173.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           18RS21]
 gi|319745519|gb|EFV97821.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 247

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VL+ V DP N+G ++R+A A + D +  +++ +   +    +S  G+  H+P  R+  
Sbjct: 105 FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 163

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   +    + G   I  + S+     +   K D  ALI+G EG+G+     E A  +AH
Sbjct: 164 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDYFALIMGNEGQGISKTMTEEADVLAH 223

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA V ++
Sbjct: 224 IEMPGQAESLNVAVAAGVVIF 244


>gi|254786479|ref|YP_003073908.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
 gi|237686026|gb|ACR13290.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
          Length = 258

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + LD V +P N+G I+RS  A     +I  ++      A++ K+++G L   P IR   
Sbjct: 113 FIALDSVTNPQNLGMIIRSVCASPATALILPRKGCAKLDALVIKASAGTLFKAPVIRCDT 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   LQ   + G   +GL+ D+K  LE E        +LG E  G+ P           +
Sbjct: 173 LMSCLQAFKTKGACVVGLALDAKTSLENESSAGTRIYVLGNETDGISPDVSRLCDEQLKI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M   +++LNV+  A++  +
Sbjct: 233 PMRNGVESLNVAVTASLIAF 252


>gi|25011695|ref|NP_736090.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           NEM316]
 gi|24413235|emb|CAD47314.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 247

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VL+ V DP N+G ++R+A A + D +  +++ +   +    +S  G+  H+P  R+  
Sbjct: 105 FLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPVFRVE- 163

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   +    + G   I  + S+     +   K D  ALI+G EG+G+     E A  +AH
Sbjct: 164 IEQFVNFCKAEGITMIATTLSEQSVNYKNLPKYDHFALIMGNEGQGISKTMTEEADVLAH 223

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA V ++
Sbjct: 224 IEMPGQAESLNVAVAAGVVIF 244


>gi|325973155|ref|YP_004250219.1| spoU rRNA methylase family protein [Mycoplasma suis str. Illinois]
 gi|325989598|ref|YP_004249297.1| SpoU rRNA methylase family protein [Mycoplasma suis KI3806]
 gi|323574683|emb|CBZ40339.1| SpoU rRNA methylase family protein [Mycoplasma suis]
 gi|323651757|gb|ADX97839.1| spoU rRNA Methylase family protein [Mycoplasma suis str. Illinois]
          Length = 253

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D    S L+++++ + DP+N GAI+R+ VA   + II +   +   + V+ K++ G    
Sbjct: 96  DQKNTSYLIVMVEKIQDPYNFGAIIRTCVAAGVNYIIYSSSNNTKLNNVVLKTSQGYALK 155

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +  I++ +L+ AL ++  + F +    L S SK     + +N  I ++LG EG+G+ P+ 
Sbjct: 156 MQLIQVKDLSKALAELKKFNFLSYAASLKSPSKNYFSVKYENRTI-IVLGNEGEGISPRL 214

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +      + M   +++LNVS A  + +Y
Sbjct: 215 ENSVDYRIKIPMNNGVESLNVSVANGILIY 244


>gi|326392900|ref|ZP_08214113.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325991058|gb|EGD49837.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 82

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 51/77 (66%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD + DPHN+GAI+RSA AF   GII  KR +   +A + K+++GA+EH+   ++SN
Sbjct: 1   MLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSN 60

Query: 195 LTDALQKMHSWGFQTIG 211
           + + ++ +   G   +G
Sbjct: 61  INNTIRGLKERGLWIVG 77


>gi|326478018|gb|EGE02028.1| RNA methyltransferase [Trichophyton equinum CBS 127.97]
          Length = 572

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 126/318 (39%), Gaps = 97/318 (30%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84
           S P + F+YG   V+AA+    RK+  L     ++++      W+               
Sbjct: 230 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 289

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135
           A + H   P KT    T+DK+ GK   H G+ LE +PL  P      T+ +  NS  L  
Sbjct: 290 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQ 344

Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160
                                              ++LD + DP N+GAI RSA  F  D
Sbjct: 345 LAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 404

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS------ 214
            I  + + S   S V+ K+A+GA E IP + + +++  +    + G++     +      
Sbjct: 405 AIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLV 464

Query: 215 ----------DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259
                     +S   L  E+      L+LG EG GL+ K +  A S   + +PG      
Sbjct: 465 NDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSANI 522

Query: 260 ------IKALNVSNAAAV 271
                 + +LNVS A+A+
Sbjct: 523 RDDTAGVSSLNVSVASAL 540


>gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
 gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
          Length = 260

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T+++  +    ++ D V DP N+G I+R+A A     II TK      +    +S  G++
Sbjct: 103 TMESKFDGDFYLLCDKVQDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTMGSI 162

Query: 185 EHIP-YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            +IP Y    NL+  ++++   GF  +  S D+ K   Q     ++ L +G EG G+  +
Sbjct: 163 FYIPIYYDDENLS-LVKELKGKGFNLVVTSLDTDKNFFQADLRGRVLLTVGNEGNGVSRE 221

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280
             E A +   + MPG  ++LNV+ A++V +Y  + QN  
Sbjct: 222 VLEMADTKVKIPMPGNAESLNVAVASSVIMYEKVRQNQL 260


>gi|227875536|ref|ZP_03993676.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227843872|gb|EEJ54041.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 307

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 10/195 (5%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           P PV       ++++VG + +H+G +A    P L      +  S+ ++VL+ + D  N+G
Sbjct: 113 PIPVFVATEAVLEQLVGFQ-LHRGAIASMERPALPDPAAILAQSRRVLVLEDLVDHTNVG 171

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A +RSA A + D I+ T   +        + + G +  +P+ R+    DA    H+ GF+
Sbjct: 172 AAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA-DLFHAAGFE 230

Query: 209 --TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              + L  D+   +   +++  D   K+AL+ GAE  GL+  T   A  +  + M   + 
Sbjct: 231 LAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVRIEMAHGVD 290

Query: 262 ALNVSNAAAVALYIT 276
           +LNV+ A AVA + T
Sbjct: 291 SLNVAGACAVACWAT 305


>gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
           8239]
 gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
           8239]
          Length = 257

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +++ +L++++D V DP N+G I+R+A A    GI+ TK      +    +S  G++ +IP
Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   +L D ++ +   G++ +  S   K    +E    K+ + +G EG G+  K  + A
Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDKVYDIA 223

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + MPG  ++LNV+ A ++ +Y
Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249


>gi|21232594|ref|NP_638511.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|188990408|ref|YP_001902418.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21114393|gb|AAM42435.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|167732168|emb|CAP50360.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 300

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 68/138 (49%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 150 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 209

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF       D  + +       ++  ++GAE +G+  +          
Sbjct: 210 DNAQAMAQLRQAGFAVAATLVDGGQDVFATALPQRLVYVMGAESEGMDRQFASACDLQLS 269

Query: 254 LHMPGIIKALNVSNAAAV 271
           +H  G++++LNV++A AV
Sbjct: 270 IHGSGLVESLNVASATAV 287


>gi|313887237|ref|ZP_07820932.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923328|gb|EFR34142.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 247

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 105/243 (43%), Gaps = 14/243 (5%)

Query: 50  FLYGVHTVSAALNNPSR--KIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H ++ +L + S   KI+ +  A    L  +   A      PV  VP + +++   
Sbjct: 6   LIYGIHALNESLASHSDIDKIYMKKGAVTGELLEIKRTAR-TQGVPVMEVPAERLNRF-- 62

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+    +P+       L P L        +++LD V D  N GAI R+      
Sbjct: 63  TRGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+  +R S S +A    +++GAL  I   R  +L  A + +   G Q +G   D+   
Sbjct: 123 HAIVIPERDSVSVTADAVNASAGALMRISVCRERDLVTACRFLRDSGLQLVGADVDATTN 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
                    + +++G+E KG+     +  T    +   G I +LNVS A  + LY + + 
Sbjct: 183 YTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVVRQ 242

Query: 279 HFA 281
           H A
Sbjct: 243 HNA 245


>gi|66767332|ref|YP_242094.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|66572664|gb|AAY48074.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 300

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 68/138 (49%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 150 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGTAARVAEGGAEAVPLVQLP 209

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF       D  + +       ++  ++GAE +G+  +          
Sbjct: 210 DNAQAMAQLRQAGFAVAATLVDGGQDVFATALPQRLVYVMGAESEGMDRQFASACDLQLS 269

Query: 254 LHMPGIIKALNVSNAAAV 271
           +H  G++++LNV++A AV
Sbjct: 270 IHGSGLVESLNVASATAV 287


>gi|326473173|gb|EGD97182.1| hypothetical protein TESG_04597 [Trichophyton tonsurans CBS 112818]
          Length = 572

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 126/318 (39%), Gaps = 97/318 (30%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84
           S P + F+YG   V+AA+    RK+  L     ++++      W+               
Sbjct: 230 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 289

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135
           A + H   P KT    T+DK+ GK   H G+ LE +PL  P      T+ +  NS  L  
Sbjct: 290 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQ 344

Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160
                                              ++LD + DP N+GAI RSA  F  D
Sbjct: 345 LAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 404

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS------ 214
            I  + + S   S V+ K+A+GA E IP + + +++  +    + G++     +      
Sbjct: 405 AIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLV 464

Query: 215 ----------DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259
                     +S   L  E+      L+LG EG GL+ K +  A S   + +PG      
Sbjct: 465 NDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSANI 522

Query: 260 ------IKALNVSNAAAV 271
                 + +LNVS A+A+
Sbjct: 523 RDDTAGVSSLNVSVASAL 540


>gi|315655485|ref|ZP_07908384.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490140|gb|EFU79766.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 283

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 96/196 (48%), Gaps = 12/196 (6%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P PV       ++++VG   +H+G   A+   P   P  + ++++  +++L+ + D  N+
Sbjct: 86  PIPVFVASEDLLERLVGFH-LHRGAIAAMLRKPAPDPR-EILKHASRVLILEDLVDHTNV 143

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA +RSA A   D I+ T   +        + + G +  +P+ R+    D     H  GF
Sbjct: 144 GAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDP-ALFHEAGF 202

Query: 208 Q--TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   + L  DS+  +    E+  D   K+ALI GAE  GL+P+T   A  +  + M   +
Sbjct: 203 ELAALALREDSQDLRDYATELAGDPTRKVALIAGAERDGLKPQTIARADKVVRIAMAHGV 262

Query: 261 KALNVSNAAAVALYIT 276
            +LNV+ A A+A + T
Sbjct: 263 DSLNVAGAIAIACWAT 278


>gi|281343848|gb|EFB19432.1| hypothetical protein PANDA_012560 [Ailuropoda melanoleuca]
          Length = 366

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 31/206 (15%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151
           Q +D +  +  VHQG+ +E +PL       V  +       QL +VL+ + DP N+GA+L
Sbjct: 112 QKLDALC-RSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQLWLVLERIQDPRNLGALL 170

Query: 152 RSAVAFSCDGIITTKRYSPSE--------SAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           RSA     D IIT+ R             + V++K+++GA+E +      +L   LQ   
Sbjct: 171 RSAHFLGVDKIITSGRNRHGRPLVPTCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQAKA 230

Query: 204 SWGFQTIG--------LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA---- 248
             G+   G        +S  S+ P+   ++   +    L+LG EG GL    Q +     
Sbjct: 231 REGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQAVQASCQLLL 290

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T +    +P  +++LNVS AA + L+
Sbjct: 291 TILPGRQLPPGLESLNVSVAAGILLH 316


>gi|47458955|ref|YP_015817.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458283|gb|AAT27606.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 231

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 85/152 (55%), Gaps = 15/152 (9%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT--TKRYSPSESAVLAKSASGALEHIPY 189
           S+ ++VL+++NDP N+G ++RSA AF  + +I      Y+        +++ GA  ++  
Sbjct: 88  SKRILVLENINDPGNLGTLVRSAFAFGFNDVIVEGVDIYNHK----FLQASQGAFFYVNL 143

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
           I++ N  D L+ +H++      L SD+ +     ++N K +AL+LG E  G+  + ++ A
Sbjct: 144 IKVKNAVDFLKSLHNYQIYVTTLRSDAFEY--DAVENPKWLALVLGNEANGISLEMEKLA 201

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + + ++      ++LNV++A A+ L    NHF
Sbjct: 202 SKLIYIKTN--FESLNVASAGAILL----NHF 227


>gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
 gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
          Length = 253

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 22/236 (9%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            F+ G+++V  AL++  +  + ++         D +      F +  +  +   KI    
Sbjct: 29  FFVEGLNSVKEALDSDFKVEYVVVGE-------DVEFEFKGDFMLIRIANKLFKKISDTV 81

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR- 167
              + +A+   P+     D ++   + ++ D+V DP N+G I+R+A AF  D + T    
Sbjct: 82  TPQKIMAIVRMPVYREE-DFIKEEGVYVIADNVQDPGNLGTIIRTADAFGVDAVFTINNS 140

Query: 168 ---YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
              Y+P     + +++ G++ HIP I  +N  + L K+   G +        +K +  E+
Sbjct: 141 VDIYNPK----VLRASMGSIFHIPVIATAN--EVLYKLKGKGVKVFATHLKGEKFV-HEV 193

Query: 225 KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + DK  A ILG E +G+   + +       + M G  ++LNVS AAA+ LY +Q  
Sbjct: 194 EIDKGTAFILGNEARGV--SSLDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQ 247


>gi|227545546|ref|ZP_03975595.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
 gi|300908384|ref|ZP_07125847.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227184483|gb|EEI64554.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
 gi|300893791|gb|EFK87149.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 290

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 10/156 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L+ V +P NIGAI RSA A   DG+I T   +       ++ A G +  +P+  +  
Sbjct: 137 IAILESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDA 196

Query: 195 ---LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               ++ +  +H  G++T  +     + D   P  Q  K D++A+ILG+EG GLR  T  
Sbjct: 197 KVWQSEGVDLLHRAGYKTAAMALRHNTVDIDDP--QLAKVDRLAIILGSEGPGLRENTIT 254

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +     + M   + +LNV+ A+A+A +   N   K
Sbjct: 255 QSDFTIKIPMATGVDSLNVAAASALAFWELGNRKVK 290


>gi|31544882|ref|NP_853460.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541729|gb|AAP57028.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930958|gb|ADC30897.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(high)]
          Length = 260

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 18/251 (7%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPF-PV 93
           FN K ++  + E L L+G + V   L NN   K   L    + L +L     + +    +
Sbjct: 9   FNNKHQNKHKKERLCLFGYNGVYEGLINNLKIKKVYLHKEDHPLLKLIKQKGIEYELHTI 68

Query: 94  KTVPPQTIDKIVGKEAVHQGLALET-----APLLSPTLDAVRNSQ--LLMVLDHVNDPHN 146
           K    Q  D        HQG   E          +   + ++N Q  +++VLD ++DP N
Sbjct: 69  KWFDNQYRDL-----PNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-W 205
            G ILRS +A +  G+I  K    S +  + K++ GA  ++  I ++NL+ A++ +   +
Sbjct: 124 FGGILRSCLAANVLGVIFKKDNQVSINNTVIKTSLGACFYLNLIEVANLSYAIKDLQEKY 183

Query: 206 GFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKAL 263
           GF + +   SD  +    +  N  I LI+G E KG+  +  + A     + M    I++L
Sbjct: 184 GFWSYVSNLSDQAQDYNVDYANKSI-LIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSL 242

Query: 264 NVSNAAAVALY 274
           NVS A  + L+
Sbjct: 243 NVSVATGIMLF 253


>gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter sp. Re1]
 gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter sp. Re1]
          Length = 271

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 76/148 (51%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  + + L++ LD + DP N+G I+R+A A   D I+  ++     +  + +SA G+L H
Sbjct: 109 DVQKENFLMIALDRIQDPGNMGTIIRTADAAGADAIVIGQKCVDIYNPKVVRSAMGSLFH 168

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P I+  +L   L ++   G + +     +KKP           +++G+E +G+  +   
Sbjct: 169 VPIIQTDDLIKTLIELKEKGGKVVTTHLKAKKPYYDVNYMACTIIVMGSEDEGVSKEIVR 228

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  +  + MPG  ++LNV+ A  + ++
Sbjct: 229 ISDELVKIPMPGSAESLNVAIAHGIMVF 256


>gi|325293791|ref|YP_004279655.1| RNA methylase [Agrobacterium sp. H13-3]
 gi|325061644|gb|ADY65335.1| RNA methylase [Agrobacterium sp. H13-3]
          Length = 290

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 14/254 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARL-DWD 84
           RD ++     ++ R  ++   +   L   H    A    S     +L  KN L+ + D  
Sbjct: 35  RDIRERDLTGRQGRFIAEGTVVLRMLAAAHKAGGAFAAES-----ILILKNRLSGVADIL 89

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----SQLLMVLDH 140
           A+ P   PV       +D IVG   +H+G+      +   TLD + +    S L++V   
Sbjct: 90  ADFPPDVPVYVAEAPVLDGIVGFH-LHRGILALGRRVRDITLDGLTDALPASSLVLVGCG 148

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +++  N+GA+ R+A AF  D +   +           + + G++  +PY R       L+
Sbjct: 149 ISNHDNLGAMFRNAAAFYADAVFLDETSCDPLYRKALRVSVGSVLSVPYHRGGGAVQMLE 208

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++   GF    LS + +  +    ++D++AL++G EG+GL P++  +    A +     +
Sbjct: 209 RLSQAGFAIWSLSPNGETEIRDIPRSDRMALVIGTEGEGL-PQSVLSRFHTARIAQSPQL 267

Query: 261 KALNVSNAAAVALY 274
            +LN   A+ +ALY
Sbjct: 268 DSLNAGTASGLALY 281


>gi|217032394|ref|ZP_03437889.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
 gi|216945961|gb|EEC24577.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
          Length = 179

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I       
Sbjct: 15  HQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKEL 74

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E  +   K A
Sbjct: 75  AYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVEN-LSLKKCA 132

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 133 LFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 175


>gi|116490953|ref|YP_810497.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|290890427|ref|ZP_06553502.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
 gi|116091678|gb|ABJ56832.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|290479823|gb|EFD88472.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
          Length = 255

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L G H V  ALN  +  I  ++AT+  + +   D  +P   P   V  + + + + K  
Sbjct: 31  MLDGWHLVQEALNQAA-PIQAVIATEEQMDQHLID--VPQGVPAFQVS-EEVARHIAKTN 86

Query: 110 VHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             QG+  +T+ L + + D   V N   L+ LD + DP N+G ++R+A A    G+  +K 
Sbjct: 87  TPQGIFAQTS-LPNNSFDPKYVHNGSWLL-LDRIQDPGNVGTLIRTADAAGFSGVALSKE 144

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226
            +   +  + ++  G+  H+  ++  +L D + K+ +  +   G + S++    +  +  
Sbjct: 145 SADPFNPKVVRAMQGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPE 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ALILG EG+G+ P+ Q   +   H++  G  ++LNV+ A  + ++
Sbjct: 205 KNFALILGNEGQGIDPEIQAKTSENLHINFLGKAESLNVAVAGGILMF 252


>gi|224418084|ref|ZP_03656090.1| hypothetical protein HcanM9_02289 [Helicobacter canadensis MIT
           98-5491]
 gi|253827413|ref|ZP_04870298.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
 gi|253510819|gb|EES89478.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
          Length = 228

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 5/164 (3%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG  LE   L       +++   ++VL  ++D  N+G++ RSA     DGI+    ++ 
Sbjct: 61  HQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIHNF 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKI 229
            +  VL +++SGA+  +P+  + N  D   ++    F  +G S   +  P+  E K    
Sbjct: 121 KQEGVL-RASSGAMLGMPFCVVYNPLDVFHELKQADFVLLGTSLQGQNLPISLESKK--- 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL+LG EG+GL  K          + M     +LNV  A A+ +
Sbjct: 177 ALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAILI 220


>gi|152992314|ref|YP_001358035.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151424175|dbj|BAF71678.1| RNA methyltransferase, TrmA family [Sulfurovum sp. NBC37-1]
          Length = 263

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 76/141 (53%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD V +P N+G I+RS  A + D I+   + +   S ++ K++ G L  +  I+ SN
Sbjct: 123 IIALDGVTNPQNLGMIIRSCAAGNIDAILLPTKGAAQISPLVIKASVGTLFKMSIIKTSN 182

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + L+     G     LSS + K  +++I ++K   +LG E +G+ P  ++   +   +
Sbjct: 183 LKETLKHFRKEGASLYTLSSHADKSYKEQIYSEKTIFVLGNESEGVSPAVEKLCNASIAI 242

Query: 255 HMPGIIKALNVSNAAAVALYI 275
            M   +++LNV+  A++  ++
Sbjct: 243 PMQRGVESLNVAVTASLLAFL 263


>gi|281491073|ref|YP_003353053.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
 gi|281374831|gb|ADA64351.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
          Length = 252

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 119/257 (46%), Gaps = 23/257 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +D KK++   +      +  +  + G H +  AL    R I Q+   +N L +L      
Sbjct: 7   KDNKKIKEARKLLTKKYRKNSYLIEGFHLLEEALK-AGRSIKQIFVEENKLTKLTEMIGA 65

Query: 88  PHPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                   V  V  + +  +   E+  QGL  E   +    +D   ++   ++L++V DP
Sbjct: 66  EKSLTDLSVNLVSKEVLKSLADSES-PQGLIAEVTKI-EEVID--FSAAKFLLLENVQDP 121

Query: 145 HNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
            N+G ++R+A A     +I    T   YSP     + +S  G+  H+P +R++   D   
Sbjct: 122 GNVGTMIRTADAAGFSAVILLGETADIYSPK----VMRSMQGSNFHLPLVRMAK-EDCFA 176

Query: 201 KMHSWGFQ--TIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP 257
           ++   G    T  LS++S   +  +I N+   ALI+G EG G+  +  + A  + H+ MP
Sbjct: 177 QLKKAGISILTTTLSANS---VSYKIINEPHFALIMGNEGAGVSDEAVKAADKLVHIDMP 233

Query: 258 GIIKALNVSNAAAVALY 274
           G  ++LNV+ AA + ++
Sbjct: 234 GQAESLNVAVAAGILMF 250


>gi|218288912|ref|ZP_03493163.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241001|gb|EED08178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 249

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKR-YSPSESAVLAKSASGALEH 186
           R   + + ++ V+D HN  AILRSA AF      +I  K+ + PS+         GA + 
Sbjct: 41  RTGYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFQPSKGVT-----QGAHKW 95

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   R+ ++  A+  +H+ GFQ       D  +P++        A++ G E  G+ P+ +
Sbjct: 96  LTIHRMPSVGRAIDALHARGFQVYATDLGDGAEPIDAVDLARPTAILFGNEKDGVSPEAR 155

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A    ++ M G +++ NVS AAA+ALY
Sbjct: 156 ERADGRFYIPMAGFVQSFNVSVAAAIALY 184


>gi|227519879|ref|ZP_03949928.1| RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227072673|gb|EEI10636.1| RNA methyltransferase [Enterococcus faecalis TX0104]
          Length = 258

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  QN+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFQNN 257


>gi|291618555|ref|YP_003521297.1| YfiF [Pantoea ananatis LMG 20103]
 gi|291153585|gb|ADD78169.1| YfiF [Pantoea ananatis LMG 20103]
 gi|327394935|dbj|BAK12357.1| tRNA/rRNA methyltransferase YfiF [Pantoea ananatis AJ13355]
          Length = 377

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L+   +   ++ L+ V++PHN+GAI+RS   F   G++     S  ES    ++A G  E
Sbjct: 223 LNKAESKDCVLALEDVSNPHNLGAIMRSCAHFGVKGLLVND-ASLLESGAAVRTAEGGAE 281

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+  I  +   + L+     G+  +  SS     L   +   K+ L+LG E +GL   T 
Sbjct: 282 HVQAISGATFNEGLEAFRKAGYTIVTTSSHQGTSLSDAVLPAKMVLVLGQEREGLSDSTF 341

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +       +   G +++LNVS A  V L  +  QN
Sbjct: 342 QQGDMSLSIGGTGNVESLNVSVATGVLLAEWWRQN 376


>gi|210633174|ref|ZP_03297710.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
 gi|210159214|gb|EEA90185.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
          Length = 303

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L+ + D  N+GAI RSA A + DGI+ +           A+ + G +  +P+ RI  
Sbjct: 138 VCILEGIVDHSNVGAIFRSAAALNVDGILASPTCVDPLYRRSARVSMGTVFQVPWTRIGT 197

Query: 195 LT-----DALQKMHSWGFQT--IGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKT 244
                  D L  +H  GF    + LS DS     P  Q I  +++A+ +G EG GL+PKT
Sbjct: 198 EARTWPRDGLAVLHDAGFTCAAMALSDDSVSLDDPALQSI--ERLAVFMGTEGAGLQPKT 255

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M   + +LNV+ A+AVA +
Sbjct: 256 IAGCDKTIRIPMAHGVDSLNVAAASAVAFW 285


>gi|226331060|ref|ZP_03806578.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
 gi|225201855|gb|EEG84209.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
          Length = 367

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 10/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS----ESAVLAKSASGALEHIPY 189
            ++ L+ V +PHN+GAI+RS   F   G+I     SP     ES    ++A G  E+I  
Sbjct: 219 CVLALEDVGNPHNVGAIMRSCAHFGVKGVI-----SPDSAVLESGAAVRTAEGGAEYIQG 273

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I   N    L K    G+  +  SS     PL +     K+ LILG E  GL   T    
Sbjct: 274 IDADNFAQTLDKFKKAGYTLVATSSHKGSVPLSKAQLPAKMVLILGQEKDGLSESTLNQG 333

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
               ++   G +++LNVS A+ V L
Sbjct: 334 DMSIYIGGTGHVESLNVSVASGVLL 358


>gi|220912632|ref|YP_002487941.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219859510|gb|ACL39852.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 269

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 11/202 (5%)

Query: 83  WDANLPHPF------PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLL 135
           W A+L   F      PV       +++I G   +H+G +A    P   P  + +  ++ +
Sbjct: 63  WLADLDDVFQAYPDVPVFIGKAALLEEITGFH-LHRGAMAAMERPDPVPLPELLAGARRV 121

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            VL+ + D  N+GAI RSA A   D ++ + R          + + G +  +P+ R+ + 
Sbjct: 122 AVLEDIVDHTNVGAIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESW 181

Query: 196 TDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA 252
              LQ +   GF    + L+ D++        N D++AL+LG EG G+ P+T        
Sbjct: 182 PQDLQVLKDHGFTVAALELTGDARDVDAVAATNPDRLALVLGTEGAGMSPETLAAVDLAV 241

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M   + +LNV+ A+AVA +
Sbjct: 242 KIPMRNGVDSLNVAAASAVAFW 263


>gi|297155855|gb|ADI05567.1| putative rRNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 272

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146
           P PV  V P   +++ G   VH+G   +++  PL  P  + +   ++ + +++ VND  N
Sbjct: 76  PAPVYAVSPDLAERVTGYH-VHRGALASMQRKPL--PEAEQLLEGARRVAIMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   G
Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLETWPRGLEAVRHTG 192

Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+ + L+ D K     +    + +++AL+LGAEG GL  +    A     + M   + +L
Sbjct: 193 FKILALTPDEKATSIDDAAPHRIERVALMLGAEGDGLSVQALMAADEWVRIPMAHGVDSL 252

Query: 264 N 264
           N
Sbjct: 253 N 253


>gi|123969030|ref|YP_001009888.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
 gi|123199140|gb|ABM70781.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
          Length = 236

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 16/172 (9%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P     R    ++VLD + DP N+G + R+A+A   + I       P    VL +++SGA
Sbjct: 63  PNYQFNRKDDFVLVLDRIQDPGNMGNLFRTALAAGVNAIFLAGGAHPLGQKVL-RASSGA 121

Query: 184 LEHIPYIRISNLTDALQKMHSW--------GFQTIGLSS---DSKKPLEQEIKND---KI 229
           + H+P++R   + + +              GF+    SS    +KKP +   + D   + 
Sbjct: 122 VFHLPFLRFDGIEEEILNSLLNSLSELSNVGFKIFSTSSHNESTKKPSKPYWEVDWSRRT 181

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           ALILG EGKG+  K QE       +    I+++LNV+   AV L + +   A
Sbjct: 182 ALILGNEGKGIHKKIQEAFNETITIPHSEIVESLNVA-CVAVPLLLERKRVA 232


>gi|260803601|ref|XP_002596678.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
 gi|229281937|gb|EEN52690.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
          Length = 471

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTV--PPQTI 101
           N FL+G+     AL    R   QL       +    R++   +L     VK V  P   +
Sbjct: 254 NEFLFGIAPCLLALQQGQRSFSQLFLKDAPYQTGADRIEEIESLADEKEVKVVRIPKHRM 313

Query: 102 DKIVGKEAVHQGLALETA-----PL----LSPTLDA-VRNSQLLMVLDHVNDPHNIGAIL 151
            K++G +  HQG+ LE       PL    +SPT+D       + +VL+ V DP N GAIL
Sbjct: 314 TKMIG-DGTHQGVCLEATKRRAEPLSLEDISPTVDVDSERPPIWLVLNEVQDPMNFGAIL 372

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RS+     D II +       + V++K++SGA+E      + ++   LQ + S G+  +G
Sbjct: 373 RSSYYLGVDKIIASSSNCCPLTPVVSKASSGAMETQTVYSMEDIPALLQNLSSSGWTVVG 432


>gi|289644294|ref|ZP_06476380.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
 gi|289505906|gb|EFD26919.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
          Length = 310

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 113/256 (44%), Gaps = 16/256 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  +     + R     E LF+     V         +   LL     +A +   A+L
Sbjct: 48  RDYVGLTDVALRRRREPA-EGLFIAEGEMVIERARRAGYRPRSLLVGPAKVATVP--ADL 104

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               PV    P  +  I G + VH+G LA       +P  D +  ++ ++V + +    N
Sbjct: 105 EPGVPVYLAGPDVLATITGFQ-VHRGALASMCRRPPAPAADVLATARRVLVCEDIVSHTN 163

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVL----AKSASGALEHIPYIRISNLTDALQKM 202
           +GAI RSA     D ++     SPS +  L     + + G +  +PY R+     AL  +
Sbjct: 164 LGAIFRSAAGLGMDAVL----LSPSCADPLYRRSVRVSMGEVFAVPYARLDPWPAALSLL 219

Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
              GF  + L+ S +  PL++   +  D++AL+LG+EG GL       AT    + M   
Sbjct: 220 VKHGFMLVALTPSATAVPLDELAVSSYDRLALLLGSEGPGLTRDALGVATVRVRIPMAHG 279

Query: 260 IKALNVSNAAAVALYI 275
           + +LNV+  AA+A Y+
Sbjct: 280 VDSLNVAATAAIACYV 295


>gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 278

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 8/146 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           L++L+ + DP N+G ILR+       G+I    T   Y+P     + +S  G++  +P++
Sbjct: 124 LVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPK----VIRSTMGSVYRVPFV 179

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + +L DA++++   G +        +K  +Q+        ++G E  GL  +T E A +
Sbjct: 180 YVEDLADAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADA 239

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M G +++LN + AA++ +Y T
Sbjct: 240 YIKIPMLGKVESLNAAVAASILMYET 265


>gi|325088121|gb|EGC41431.1| RNA methyltransferase [Ajellomyces capsulatus H88]
          Length = 462

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 20/154 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  N+GAI+RSA  F  D II + R S + SAV  K+++GA E+IP +  +N 
Sbjct: 258 LLLDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSATISAVAVKASAGAAENIPILTTTNP 317

Query: 196 TDALQKMH--SWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237
           T  L+  H   W F             Q++  S++   S++ ++ ++      L+LG+E 
Sbjct: 318 TLFLKNTHMNGWRFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNEAPCILMLGSED 377

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +GL+   ++ A  +  + +PG I +    + A V
Sbjct: 378 QGLQKSVRQQADGV--VVIPGAITSTGEEDRAGV 409


>gi|68535913|ref|YP_250618.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68263512|emb|CAI37000.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 285

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V    NDP N G ++R A A   D ++     +  +S   A++++G+L H+P  R 
Sbjct: 123 RLVSVPVETNDPGNAGTLIRVADAMGADAVVFVGETADPQSCKAARASAGSLFHVPVARS 182

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
           +N+ D L ++ + G Q +  ++D +  L+   EI     A + G E  GL  +    A  
Sbjct: 183 TNVKDVLGQLRAQGMQILATAADGEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADL 242

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + + G  ++LN++ AA++ +Y
Sbjct: 243 RVSIPIRGRAESLNLATAASICMY 266


>gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118170397|gb|ABK71293.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 277

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D + +++ + VL+ VND  N+G+I R+A   + D +I     +        + + G    
Sbjct: 119 DVIADARTIAVLEGVNDHENLGSIFRNAAGLAVDAVIFGAGCADPLYRRAVRVSMGHALL 178

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ---EIKNDKIALILGAEGKGLRP 242
           +P+ R S+    L+ +   GF+ + ++ D S   L     +++ D++A+++GAEG GL  
Sbjct: 179 VPFARASSWPTDLELLRDKGFRLLAMTPDPSAATLSDAMVQLEGDRVAILVGAEGPGLTE 238

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +T   +     + M     +LNV+ AAA+A Y
Sbjct: 239 RTMRASDVRVRIPMSRGTDSLNVATAAALAFY 270


>gi|225390226|ref|ZP_03759950.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
           DSM 15981]
 gi|225043714|gb|EEG53960.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
           DSM 15981]
          Length = 275

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 8/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGA 149
            PV T     + K+ G +     L     P L P ++AV R ++ + VL++V +P NIGA
Sbjct: 79  IPVYTAEFDVLTKLTGFKLTRGMLCAMYRPKL-PAVEAVCRGARRIAVLENVMNPTNIGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWG 206
           I RSA A + D ++ T   S        + + G +  +P+  +         ++ +   G
Sbjct: 138 IFRSAAALNMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWTFLEGTEWPQHGMELLSGLG 197

Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+T  ++ SD    ++    +  D++ALILG EG GL  +T         + M   + +L
Sbjct: 198 FKTAAMALSDESVRIDDPRLMAEDRLALILGTEGDGLAEETIADCDYTVRIPMAHGVDSL 257

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 258 NVAAASAVAFW 268


>gi|240281983|gb|EER45486.1| RNA methyltransferase [Ajellomyces capsulatus H143]
          Length = 419

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 20/154 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  N+GAI+RSA  F  D II + R S + SAV  K+++GA E+IP +  +N 
Sbjct: 215 LLLDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSATISAVAVKASAGAAENIPILTTTNP 274

Query: 196 TDALQKMH--SWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237
           T  L+  H   W F             Q++  S++   S++ ++ ++      L+LG+E 
Sbjct: 275 TLFLKNTHMNGWRFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNEAPCILMLGSED 334

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +GL+   ++ A  +  + +PG I +    + A V
Sbjct: 335 QGLQKSVRQQADGV--VVIPGAITSTGEEDRAGV 366


>gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
           19977]
 gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 270

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 110/249 (44%), Gaps = 6/249 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +  R +  LL T   L+ L  D   P 
Sbjct: 17  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPL-ALLGTDRRLSELAADLE-PV 74

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P      + + ++VG       LA    P   P  D ++ ++ + VL+ VND  N+G+
Sbjct: 75  DVPYYRASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAVLEGVNDHENLGS 134

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A     D ++     +        + + G    +P+ R+     +L ++   GF+ 
Sbjct: 135 IFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEWPKSLYRLRDSGFRL 194

Query: 210 IGLS--SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + ++   DSK   +    ++ +K+AL++GAEG GL       +     + M     +LNV
Sbjct: 195 LAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLRVRIPMANGTDSLNV 254

Query: 266 SNAAAVALY 274
           + AAA+A Y
Sbjct: 255 ATAAALAFY 263


>gi|315226503|ref|ZP_07868291.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
 gi|315120635|gb|EFT83767.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 324

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 25/209 (11%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150
           PV     + + ++ G   +H+G        + PT++ V + ++ + VL+++ D  N+GAI
Sbjct: 105 PVFVASAELLHRLTGYR-LHRGALSAMHRWVLPTVEEVCKEARRVAVLENIVDYTNVGAI 163

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------ALQKMHS 204
           +RSA A   D ++ T   +       A+ + G +  +P+ RI            +  +H 
Sbjct: 164 MRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGDDSHAWPHPGIDLLHR 223

Query: 205 WGFQTIGLS-----------------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            GF T+ ++                  D+     ++ + DK+ALI G EG GL  KT  +
Sbjct: 224 LGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRDQRVDKVALIFGTEGDGLSRKTLAS 283

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 + M   + +LNV+ ++AVA Y T
Sbjct: 284 TDLTVKIPMSHQVDSLNVAASSAVAFYAT 312


>gi|319946452|ref|ZP_08020689.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
 gi|319747420|gb|EFV99676.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
          Length = 254

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--S 193
           ++L+ V DP N+G ++R+A A   DG++ T + +   +    +S  G+  H+P IR+   
Sbjct: 111 LLLEDVQDPGNVGTMIRTADAAGFDGVLLTDQSADLYNMKTLRSMQGSHFHLPVIRLPKE 170

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L  A+++     + T  LS +S    + E K     L++G EG+G+  K  E+A  + H
Sbjct: 171 QLLTAIEESQLPIYATT-LSQNSVDYKQVE-KVPAFVLVMGNEGQGISSKMAESADQLVH 228

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA + ++
Sbjct: 229 ITMPGQAESLNVAVAAGILIF 249


>gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4]
          Length = 260

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 70/142 (49%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           LMVL+++ DP N+G ILR+       G+I ++      +  + +S  G++  +P+    +
Sbjct: 113 LMVLENLQDPGNLGTILRAGEGAGITGLIMSRDTVDIYNPKVIRSTMGSVFRVPFFYTDD 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   +  + + G +        K   EQE      A ++G EG GL  K  + A +   +
Sbjct: 173 LEQTVLDLKARGIRVFAAHLAGKNNYEQEDYTGNTAFLIGNEGNGLTEKLSDMADTWVKI 232

Query: 255 HMPGIIKALNVSNAAAVALYIT 276
            M G +++LN + AA++ ++ T
Sbjct: 233 PMEGKVESLNAAIAASILMFET 254


>gi|328881199|emb|CCA54438.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 272

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 7/180 (3%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P PV  + P   +++ G   VH+G   +++  PL     + +  ++ ++V++ VND  NI
Sbjct: 76  PAPVYAIQPDLAERVTGYH-VHRGALASMQRKPL-PDAAELLVGARRVVVMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPRGLEAVREAGF 193

Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + + L+   K     E    + +++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 194 KLLALTPAEKAMSIDEAAPHRLERVALMLGAEGDGLTTQALRAADEWVRIPMAHGVDSLN 253


>gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
           JGS1987]
 gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
           JGS1495]
 gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
           JGS1495]
 gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
           JGS1987]
          Length = 257

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 78/146 (53%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +++ +L++++D V DP N+G I+RSA A    GI+ TK      +    +S  G++ +IP
Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRSAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   +L D ++ +   G++ +  S   K    +E    K+ + +G EG G+  +  + A
Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + MPG  ++LNV+ A ++ +Y
Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249


>gi|118586223|ref|ZP_01543687.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
 gi|118433339|gb|EAV40041.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
          Length = 255

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L G H V  ALN  +  I  ++AT+  + +   D  +P   P   V  + + + + K  
Sbjct: 31  MLDGWHLVQDALNQAA-PIQAVIATEEQMDQHLID--VPQGVPAFQVS-EEVARHIAKTN 86

Query: 110 VHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             QG+  +T+ L + + D   V N   L+ LD + DP N+G ++R+A A    G+  +K 
Sbjct: 87  TPQGIFAQTS-LPNNSFDPKYVHNGSWLL-LDRIQDPGNVGTLIRTADAAGFSGVALSKE 144

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226
            +   +  + ++  G+  H+  ++  +L D + K+ +  +   G + S++    +  +  
Sbjct: 145 SADPFNPKVVRAMQGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPE 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ALILG EG+G+ P+ Q   +   H++  G  ++LNV+ A  + ++
Sbjct: 205 KNFALILGNEGQGIDPEIQAKTSENLHINFLGKAESLNVAVAGGILMF 252


>gi|320096169|ref|ZP_08027762.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976914|gb|EFW08664.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 299

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 17/208 (8%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           P P+ T P + ++++ G   +H+G        AL  A  L  T      ++ ++VL+ + 
Sbjct: 84  PVPIFTAPEEVLEQLTGFH-LHRGALAAMHRPALPRADELLATARGGAPARRVVVLEDLV 142

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GA+ RSA A   D ++ T   +        + + G +  +P+ R+    D +  +
Sbjct: 143 DHTNVGAVFRSAAALGVDAVLVTPSCADPLYRRSVRVSMGTVFQVPWTRLEAWPD-MGAL 201

Query: 203 HSWGFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           H  GF    L+ SD   PL+             K+A+++G EG GL  +T   +     +
Sbjct: 202 HGAGFTVAALALSDEAVPLDDFAALPVLAAPGAKLAMVMGTEGDGLGRRTIAASDYTVRI 261

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M   + +LNV+ A+AV  + T+   A+
Sbjct: 262 PMEHGVDSLNVAAASAVVFWATRGVGAR 289


>gi|261414903|ref|YP_003248586.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371359|gb|ACX74104.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302325885|gb|ADL25086.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 371

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 75/142 (52%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V  ++ DP N+GA +RS++A   D ++   +     +  +A++++GALE +   R 
Sbjct: 221 KLIAVATNIEDPRNLGACIRSSLALGVDILLLPAKGMCGITPSVARTSAGALEKLRICRP 280

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  A+ ++   G+Q +GL +D++  L      D + L +G E  GL P  ++   ++ 
Sbjct: 281 DNLEGAIGELKMAGYQILGLDADTETNLAGFDFADHVVLAVGGEDVGLPPFIKKQCDAVL 340

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M     + N S A ++ LY
Sbjct: 341 RIPMKPEAHSYNASVALSLGLY 362


>gi|160941168|ref|ZP_02088505.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435729|gb|EDP13496.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
           BAA-613]
          Length = 270

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 8/146 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           +MVL+ + DP N+G I+R+       GI+    T   Y+P     + +S  G++  +P++
Sbjct: 115 IMVLETIQDPGNLGTIIRAGEGAGITGIVMNHDTADIYNPK----VIRSTMGSIFRMPFV 170

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +L DA   M + G +            +QE   D +  ++G E  GL  +T   A  
Sbjct: 171 YADDLQDACLLMKNRGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEANGLTEETTSLADC 230

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
           +  + M G +++LN + AA+V ++ T
Sbjct: 231 LVKIPMEGKVESLNAAIAASVLMFET 256


>gi|228476493|ref|ZP_04061183.1| rRNA methylase [Streptococcus salivarius SK126]
 gi|228251914|gb|EEK10960.1| rRNA methylase [Streptococcus salivarius SK126]
          Length = 245

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 5/183 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           VK V P+ + ++  +    QG+  E A       +++    LL  L+ V DP N+G ++R
Sbjct: 65  VKLVSPEVLKELC-ETQTPQGIVAEVAKQSQALPESLSGKYLL--LEDVQDPGNVGTMIR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A   DG+  + + +   +    +S  G+  H+P  R   + D ++     G   +  
Sbjct: 122 TADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYR-GPILDMVEACKKQGVPVLAT 180

Query: 213 SSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +        + +K D   AL++G EG+G+     E+A  + H+ MPG  ++LNV+ AA +
Sbjct: 181 TLSDISVDYKAVKTDGNFALVMGNEGQGISQDMAESADQLVHISMPGQAESLNVAVAAGI 240

Query: 272 ALY 274
            ++
Sbjct: 241 LMF 243


>gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
 gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
          Length = 260

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 34/280 (12%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALN-NPSRKIF 69
           I SLK+    ++R+ HR   + +            +NL L+ G H +  A   N S    
Sbjct: 2   ITSLKNPLVKQIRQLHRTKGRRE------------QNLLLFEGTHLLETACEVNCSLDCL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP------LLS 123
              A         W +  P  + + T   Q I+ +V  E V Q LA    P       ++
Sbjct: 50  CYTA--------QWQSRYPQLWELATQKAQRIE-LVSPE-VLQALATTVNPDGVIATAVN 99

Query: 124 PTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           P +    + + ++ ++L+ + DP N+G I+R+AVA   DGI  +      ++  + +S++
Sbjct: 100 PKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSA 159

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           GA  H+P I   +L+  ++   + G Q I  L + +    + ++    + ++LG EG GL
Sbjct: 160 GAWFHVPLIVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDLTQPSL-ILLGNEGAGL 218

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +    A     + +   I++LNV+ A A+ LY  Q   
Sbjct: 219 SEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQM 258


>gi|78212412|ref|YP_381191.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
 gi|78196871|gb|ABB34636.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
          Length = 249

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 20/167 (11%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           L+  P + P LD       L+VLD + DP N+G +LR+A+A   + +       P  + V
Sbjct: 70  LDRLPAVPPELD------FLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAGVDPLGTKV 123

Query: 176 LAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIG-LSSDSKK----PLEQ 222
           L ++++GAL  +P+ R        IS L   L+++ + G Q +  L  DS +    P   
Sbjct: 124 L-RASAGALLQLPHQRFGPSEAMAISQLRQGLKQLAALGVQVVATLVPDSTQASPIPYWD 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                  AL+LG EG GL P  Q   T    L     +++LNV++AA
Sbjct: 183 LDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVASAA 229


>gi|328955415|ref|YP_004372748.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
 gi|328455739|gb|AEB06933.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
          Length = 291

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 8/199 (4%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            P P+     + +  + G       LA    P L   ++ +   + + VLD + D  N+G
Sbjct: 80  EPIPIFVAAQELLVSLTGFALTRGALAAMRRPPLPDPVEMLAGCRRVCVLDGLVDHTNVG 139

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMH 203
           A  RSA A + D ++ +            + + G +  +P+ R+     S   D +  + 
Sbjct: 140 AAFRSAAALNVDAVLVSPTCCDPLYRRAVRVSMGTVFQVPWTRLGADRASWPQDGMATLR 199

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + GF    L+ +D    L+  I    D++AL  G EG+GL  +  E    +  + M G +
Sbjct: 200 AAGFTCAALALADESISLDDPILTAIDRLALFFGTEGRGLSDRVIEACDMIVRIPMAGGV 259

Query: 261 KALNVSNAAAVALYITQNH 279
            +LNV+ A+AV  +    H
Sbjct: 260 DSLNVAAASAVVFWQLCPH 278


>gi|148544812|ref|YP_001272182.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|184154155|ref|YP_001842496.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363952|ref|ZP_03848053.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
 gi|325683156|ref|ZP_08162672.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148531846|gb|ABQ83845.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|183225499|dbj|BAG26016.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071007|gb|EEI09329.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
 gi|324977506|gb|EGC14457.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 290

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 10/156 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L+ V +P NIGAI RSA A   DG+I T   +       ++ A G +  +P+  +  
Sbjct: 137 IAILESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDA 196

Query: 195 ---LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               ++ +  +H  G++T  +     + D   P   E+  D++A+ILG+EG GLR  T  
Sbjct: 197 KVWQSEGVDLLHRAGYKTAAMALRHNTVDIDDPQLAEV--DRLAIILGSEGPGLRENTIT 254

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +     + M   + +LNV+ A+A+A +   N   K
Sbjct: 255 QSDFTIKIPMATGVDSLNVAAASALAFWELGNRKVK 290


>gi|146319366|ref|YP_001199078.1| rRNA methylase [Streptococcus suis 05ZYH33]
 gi|146321571|ref|YP_001201282.1| rRNA methylase [Streptococcus suis 98HAH33]
 gi|253752395|ref|YP_003025536.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84]
 gi|253754221|ref|YP_003027362.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7]
 gi|253756155|ref|YP_003029295.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407]
 gi|145690172|gb|ABP90678.1| rRNA methylase [Streptococcus suis 05ZYH33]
 gi|145692377|gb|ABP92882.1| rRNA methylase [Streptococcus suis 98HAH33]
 gi|251816684|emb|CAZ52325.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84]
 gi|251818619|emb|CAZ56453.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407]
 gi|251820467|emb|CAR47189.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7]
 gi|292558998|gb|ADE31999.1| rRNA methyltransferase [Streptococcus suis GZ1]
 gi|319758800|gb|ADV70742.1| rRNA methylase [Streptococcus suis JS14]
          Length = 246

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VL+ V DP N+G ++R+A A   DG+  + + +   +  + +S  G+  H+P  R+  
Sbjct: 104 FLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSMQGSHFHLPVYRMP- 162

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253
           ++  L  + S   Q +  +  S+    +EI  +   AL++G EG+G+     + A  + H
Sbjct: 163 ISSILTALKSNQIQILATTLSSQSVDYKEITPHSSFALVMGNEGQGISDLVADEADQLVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA + L+
Sbjct: 223 ITMPGQAESLNVAIAAGILLF 243


>gi|298712193|emb|CBJ33064.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 550

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 17/159 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            Q+ + LD V DP N GA+LRSA  F   G++   + S + +A ++KS++GA+E +    
Sbjct: 376 GQVWLALDEVTDPQNFGALLRSAHFFGASGVVACAKNSAALTATVSKSSAGAVEVMRVHS 435

Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIA----LILGAEGKGLRPKT-- 244
            +N+   L++    G++ +G S S+   PL  E+     A    ++LG EG G+R     
Sbjct: 436 TANMMRFLKRSRENGWRVVGTSVSERSGPL-HELPAGPGAPPTIVVLGNEGYGVRTNVLR 494

Query: 245 ---------QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     +   ++A    P  + +LNVS    V L+
Sbjct: 495 ECEFLVEVAGDGGGALAEGATPSTVDSLNVSVTGGVVLF 533


>gi|289613400|emb|CBI59653.1| unnamed protein product [Sordaria macrospora]
          Length = 593

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 145/344 (42%), Gaps = 82/344 (23%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYK-KMQSFNQKSRHTSQPENL----------FLYGVH 55
           ++ E+  S +D+  +   R   D   + + F    R  + P++L          FLYG  
Sbjct: 226 QRPERRDSFRDTRSSTRERRETDRTPRRELFRDNDREETTPKSLSIPYTTAASQFLYGTS 285

Query: 56  TVSAALNNPSRKIFQL----------LATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            V AAL    RK+++L          LA   A+ +L     +   F V     + +DK+ 
Sbjct: 286 VVEAALQAARRKLYKLYIYAGANREKLAKDAAIQKLAQRNKVEIVF-VNEDGLKMMDKMS 344

Query: 106 GKEAVHQGLALETAPLLSPTL----------------------------DAVRNSQ---- 133
           G    H G  LE +PL  P +                            +A+ N +    
Sbjct: 345 GSRP-HNGYILEASPLPQPPVISLGEVVEAETGQGTTGYKVVLGHQSHEEALINGKSDFV 403

Query: 134 ---------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++V+D + DP N+GAILRS        +  TKR S S + V  K+++GA 
Sbjct: 404 SASSTTHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRESASMTPVALKASAGAS 463

Query: 185 EHIPYIRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLE----QEI---KNDKIA 230
           E +    + +L   LQ     G+       +T G S + +K L+    +EI   + +   
Sbjct: 464 ESLALFSVGHLPKFLQDSRENGWLVYAAVPRTSG-SGNLQKHLDLHEIEEIDPLRTNPCI 522

Query: 231 LILGAEGKGLRPKTQETATSMAHL-HMPG--IIKALNVSNAAAV 271
           L+LG+EG+GL  + +  A    ++ +M G  +I +LNVS AA +
Sbjct: 523 LLLGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGL 566


>gi|50365074|ref|YP_053499.1| rRNA methylase [Mesoplasma florum L1]
 gi|50363630|gb|AAT75615.1| rRNA methylase [Mesoplasma florum L1]
          Length = 251

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 115/255 (45%), Gaps = 34/255 (13%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           RD KK Q+           ENLF+  G+H V+ A+    R I + +  +  +    +D N
Sbjct: 19  RDDKKFQT----------VENLFVIEGLHMVNEAI---KRNIVKTIFLEEKMFSKIYDIN 65

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               F    +     +KI   +   QG+   T  L    ++ + N   +++LD + DP N
Sbjct: 66  ---NFECVLISENVSNKISSTKT-SQGI-FATCILEDQKINMLEN---ILILDQIQDPGN 117

Query: 147 IGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +G ++RSA +F    ++ +      Y+P     + +S  G L  I  I   +L   + ++
Sbjct: 118 MGTLIRSAASFEFQTVVASNNSVSFYNPK----VLRSTQGNLFSINLIN-DDLIKTIDEL 172

Query: 203 HSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
               +Q IG   + +    ++I   KN K ALI+G E KG+  + +       ++ M   
Sbjct: 173 KQNNYQIIGTVLNDETKFMKQIEFSKNQKYALIIGNEAKGISDELKPLIDINLNIEMSNE 232

Query: 260 IKALNVSNAAAVALY 274
           +++LN + A ++ +Y
Sbjct: 233 VESLNAAIAGSIIMY 247


>gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
 gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
          Length = 252

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           +KK+   N+K R     + LF+  G H V  A+ N    + +L+  ++      W+ +  
Sbjct: 15  WKKLH--NKKDR---DKQGLFMVEGFHLVEEAIKNKDC-VKELIIRESIEVPAQWNIDGI 68

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                 TV  + I K++      QG+        +   + +  +Q +++LD V DP N+G
Sbjct: 69  EI----TVVNEAIIKLLSDTETPQGII--AVCFQTKHAEIIHTAQKVLLLDAVQDPGNLG 122

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R+A A   D II  +      +  + +S  GA+ H+P ++  +L + +  +   G  
Sbjct: 123 TIIRTADAAGVDAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVK-GDLLEMISLLKERGIA 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G S  + K       +++ ALI+G EG G+  K  E      ++ + G  ++LNV+ A
Sbjct: 182 VYGTSLQNGKVYTCVKPSNEFALIVGNEGNGVSEKVLEQTDQNLYIPIYGKSESLNVAIA 241

Query: 269 AAVALY 274
           + + LY
Sbjct: 242 SGILLY 247


>gi|225872630|ref|YP_002754087.1| RNA methyltransferase, TrmH family protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 283

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+V   + DP N+G ++RSA AF   GI+T        +A + ++++G++  +P +   
Sbjct: 131 LLLVTASLQDPGNLGTLIRSAEAFGASGILTLPGTVNLWNAKVVRASAGSVFRMPVVARC 190

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              + L ++ + G      ++D   P  Q       AL++G EG GL P   + A +   
Sbjct: 191 E-EEVLARLAAQGVTLFATTADGDLPATQAALTQPCALLIGNEGAGLTPHLLQAADARLA 249

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +  PG +++LN + A ++ LY
Sbjct: 250 IPTPGPVESLNAAIAGSILLY 270


>gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801]
 gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801]
          Length = 260

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 34/280 (12%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALN-NPSRKIF 69
           I SLK+    ++R+ HR   + +            +NL L+ G H +  A   N S    
Sbjct: 2   ITSLKNPLVKQIRQLHRTKGRRE------------QNLLLFEGTHLLETACEVNCSLDCL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP------LLS 123
              A         W +  P  + + T   Q I+ +V  E V Q LA    P       ++
Sbjct: 50  CYTA--------QWQSRYPQLWELATQKAQRIE-LVSPE-VLQALATTVNPDGVIATAVN 99

Query: 124 PTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           P +    + + ++ ++L+ + DP N+G I+R+AVA   DGI  +      ++  + +S++
Sbjct: 100 PKISKPTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSA 159

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           GA  H+P I   +L+  ++   + G Q I  L + +    + ++    + ++LG EG GL
Sbjct: 160 GAWFHVPLIVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDLTQPSL-ILLGNEGAGL 218

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +    A     + +   I++LNV+ A A+ LY  Q   
Sbjct: 219 SEELASLADQTVSIPLGNTIESLNVAIACALLLYERQRQI 258


>gi|212550964|ref|YP_002309281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549202|dbj|BAG83870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 247

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPH 145
           ++ VP + +D++  +   HQGL    + +    L+++           L+++LD + D H
Sbjct: 51  IRRVPREKLDRLTRRN--HQGLVAFISTITYQKLESIVPFLYEEGKVPLILLLDGITDVH 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI RS      + I+     S S +A   K ++GAL  +   R SN+ +A++ +   
Sbjct: 109 NFGAIARSCECAGVNAIVIPLVNSVSVNADAIKISAGALMSLSVCRESNIMNAVKFLKLC 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G++    +  +     +       A+++G+E KG+ P        +  +   G I +LNV
Sbjct: 169 GYKVYAATEKATTLYTKTDYTYPTAIVIGSEDKGISPAVLYLCDKLVKIPTLGNITSLNV 228

Query: 266 SNAAAVALY 274
           S A AV LY
Sbjct: 229 SAATAVLLY 237


>gi|322517494|ref|ZP_08070367.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123976|gb|EFX95535.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 245

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 9/185 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           VK V P+ + ++  +    QG+  E A       +++    LL  L+ V DP N+G ++R
Sbjct: 65  VKLVSPEVLKELC-ETQTPQGIVAEVAKQSQALPESLSGKYLL--LEDVQDPGNVGTMIR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTI 210
           +A A   DG+  + + +   +    +S  G+  H+P  R  I  + +  +K H       
Sbjct: 122 TADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGPILEMVETCKK-HDLTVLAT 180

Query: 211 GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            LS  S     + +K D   AL++G EG+G+  +  E+A  + H++MPG  ++LNV+ AA
Sbjct: 181 TLSEVSVDY--KAVKTDGNFALVMGNEGQGISKEMAESADQLVHINMPGQAESLNVAVAA 238

Query: 270 AVALY 274
            + ++
Sbjct: 239 GIIMF 243


>gi|225559060|gb|EEH07343.1| RNA methyltransferase [Ajellomyces capsulatus G186AR]
          Length = 462

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 20/154 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  N+GAI+RSA  F  D II + R S   SAV  K+++GA E+IP +  +N 
Sbjct: 258 LLLDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSAPISAVAVKASAGAAENIPILTTTNP 317

Query: 196 TDALQKMH--SWGF-------------QTIGLSSD---SKKPLEQEIKNDKIALILGAEG 237
           T  L+  H   W F             Q++  S++   S++ ++ ++      L+LG+E 
Sbjct: 318 TLFLKNTHMNGWKFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNESPCILMLGSED 377

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +GL+   ++ A  +  + +PG I +    + A V
Sbjct: 378 QGLQKSVRQQADGV--VVIPGAITSTGEEDRAGV 409


>gi|83319453|ref|YP_424436.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283339|gb|ABC01271.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 255

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 122/279 (43%), Gaps = 36/279 (12%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +S  K ++I  LKD       R HR+ +K+                 + G H +  A N+
Sbjct: 7   VSNPKIKEILKLKD-------RKHRNKQKL---------------FIVEGFHMIMEAYND 44

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
              K   LL T  AL  L  +  +P+   V  +      KI       Q  A+ + P  +
Sbjct: 45  QIIK--TLLGTSKALEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMPE-N 99

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S  G 
Sbjct: 100 TKIDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGN 156

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK---NDKIALILGAEGKG 239
           L  +  +    L   + ++H   +  IG S  D  K L + +K   +DK ALI+G EGKG
Sbjct: 157 LFQVNLVN-EYLVKVINQLHDNNYIIIGTSLHDDSKALSK-VKFDSDDKYALIIGNEGKG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 215 ISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253


>gi|15674507|ref|NP_268681.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71910113|ref|YP_281663.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94987928|ref|YP_596029.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94991812|ref|YP_599911.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|13621609|gb|AAK33402.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
 gi|71852895|gb|AAZ50918.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94541436|gb|ABF31485.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94545320|gb|ABF35367.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 245

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           +VL+ V DP N+G I+R+A A   DG+  +++ +   +    +S  G+  H+P  R  + 
Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251
            L   LQ+  +     I  ++ SKK ++ +    ++++AL+LG EG+G+  +    A  +
Sbjct: 164 QLCRELQEYET----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|303260346|ref|ZP_07346316.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303265125|ref|ZP_07351038.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
 gi|302638512|gb|EFL68977.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302645342|gb|EFL75576.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
          Length = 212

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  N    + L+ V DP N+G I+R+A A 
Sbjct: 48  PQGIVAVVQKEEVGQ---------------ADLNQGKFLFLEDVQDPGNVGTIIRTADAA 92

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 93  GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 151

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 152 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209


>gi|303254103|ref|ZP_07340218.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
 gi|303262494|ref|ZP_07348436.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303266013|ref|ZP_07351908.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
 gi|303268055|ref|ZP_07353856.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
 gi|302598936|gb|EFL65967.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
 gi|302636394|gb|EFL66887.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302642415|gb|EFL72761.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
 gi|302644454|gb|EFL74706.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
          Length = 246

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  N    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLNQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|270265372|ref|ZP_06193633.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
 gi|270040776|gb|EFA13879.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
          Length = 147

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ L+ V +PHN+GAI+RS   F  +G++  +  +  ES    ++A G  EHI  I   +
Sbjct: 1   MLALEEVGNPHNLGAIVRSCAHFGVNGVLL-QDPAVLESGAAVRTAEGGAEHIKAINADD 59

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
               L      G+  +  SS    PL Q     K+ L+LG E  GL     +       +
Sbjct: 60  FLSVLDTFRKAGYTIVTTSSHKGTPLAQAKLPSKMVLVLGQERDGLSDSAWQQGDMSVSI 119

Query: 255 HMPGIIKALNVSNAAAVAL--YITQNH 279
              G +++LNVS A  + L  +  QN 
Sbjct: 120 GGTGKVESLNVSVATGILLADWWRQNQ 146


>gi|307700896|ref|ZP_07637921.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|307613891|gb|EFN93135.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 307

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 10/195 (5%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           P PV       ++++VG   +H+G +A    P L      +  S+ ++VL+ + D  N+G
Sbjct: 113 PIPVFVATEAVLEQLVGFH-LHRGAIASMERPALPDPAAILAQSRRVLVLEDLVDHTNVG 171

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A +RSA A + D I+ T   +        + + G +  +P+ R+    DA    H+ GF+
Sbjct: 172 AAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA-DLFHAAGFE 230

Query: 209 --TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              + L  D+   +   +++  D   K+AL+ GAE  GL+  T   A  +  + M   + 
Sbjct: 231 LAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVRIEMAHGVD 290

Query: 262 ALNVSNAAAVALYIT 276
           +LNV+ A AVA + T
Sbjct: 291 SLNVAGACAVACWAT 305


>gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum]
          Length = 282

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           L ++ D +  P N+GA++R+A A    GI +T     P +   L ++A+G+   +P I  
Sbjct: 117 LFVLADGIQSPGNLGALIRTAEAAGATGILVTVGTVDPFQPKAL-RAAAGSAFRLPIIAG 175

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           S++ D LQK++  G + +        P E       + L LG+EG GLR  T +    +A
Sbjct: 176 SSVADELQKLYRQGVRLVTADIHGDTPYEAFDWRQPVLLWLGSEGHGLRSLTDDFKHRLA 235

Query: 253 H---LHMPGIIKALNVSNAAAVALY 274
               + M G +++LNV+ A A+ LY
Sbjct: 236 ARLVIPMEGQVESLNVAVAGAILLY 260


>gi|195978751|ref|YP_002123995.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867931|ref|YP_002743879.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|195975456|gb|ACG62982.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225701207|emb|CAW98137.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 245

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           ++L+ + DP N+G I+R+A A + DG+  +++ +   +    +S  G+  H+P  R  I 
Sbjct: 104 LILEDIQDPGNLGTIIRTADAANFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDIY 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            ++ A+Q+       T  LS DS    +   ++  +AL+LG EG+G+ P+    A  + H
Sbjct: 164 QVSQAMQQQKIPVLATT-LSQDSIDYKDLSARS-SLALVLGNEGQGISPEMAALADQLIH 221

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA + ++
Sbjct: 222 ISMPGQAESLNVAVAAGILIF 242


>gi|78185098|ref|YP_377533.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
 gi|78169392|gb|ABB26489.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
          Length = 279

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 16/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---- 191
           +VLD + DP N+G++LRSA+A     +       P    VL ++++GAL  +P+ R    
Sbjct: 116 LVLDRIQDPGNLGSLLRSALAADVQSVWMGSGVDPLGGKVL-RASAGALLQLPHRRFGPE 174

Query: 192 ----ISNLTDALQKMHSWGFQTIG-LSSDSKKPLE----QEIKNDK-IALILGAEGKGLR 241
               I +L  AL+ + + G Q +  L  D+  PL      E+   K  AL+LG EG GL 
Sbjct: 175 QEKAIDDLDQALRVLVAQGIQVVATLVPDASGPLPPIPYWELDWTKPTALVLGTEGAGLH 234

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           P+ Q   T    L     +++LNV+ AAAV L + +  
Sbjct: 235 PRLQACCTHAVTLPHSSRVESLNVA-AAAVPLLLERRR 271


>gi|170767257|ref|ZP_02901710.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
 gi|170123591|gb|EDS92522.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
          Length = 345

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +    +K+ L+LG E +GL    ++      +
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTTLPEKMVLVLGQEYEGLPDAARDPNDVRVN 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLAEWWRQN 343


>gi|17555908|ref|NP_499333.1| hypothetical protein Y45F3A.9 [Caenorhabditis elegans]
 gi|3881022|emb|CAA21494.1| C. elegans protein Y45F3A.9, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 294

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 110/245 (44%), Gaps = 25/245 (10%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP-------VKTV-PPQTID 102
           L+G+H+V  A+ +  R    +   K    R D DA +             KT+     +D
Sbjct: 45  LFGLHSVLEAIRSGKRDFHSVFLKKAVENRADSDARIKEILSRIDELGIQKTLLTDDQLD 104

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           ++  +  +H G+ ++ + L     +    S   + +D V DP N+GAI RSA  F  DG+
Sbjct: 105 RLT-EFQLHNGICMDASALQFSNFEPKTVS---IFVDKVLDPGNLGAIGRSAWYFGADGL 160

Query: 163 ITTKRYSP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--------S 213
              K   P S +  + KS+ GALEH+P  +  N  +   K+ + G + +          +
Sbjct: 161 GLVKGRGPKSITPAMIKSSCGALEHLPVQQFLNFNEFRDKIKAAGGELVATCDPGAAEKA 220

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKT---QETATSMAHLHMPGI-IKALNVSNAA 269
             S K L+Q      + ++LG EG G+        +T  S++ +   G  + +LNVS  A
Sbjct: 221 GISAKSLDQWTPEKPVGIVLGDEGVGISRGILNLCDTVISISPVRKDGSNVTSLNVSVVA 280

Query: 270 AVALY 274
            + L+
Sbjct: 281 GILLH 285


>gi|37525241|ref|NP_928585.1| putative methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784668|emb|CAE13568.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 338

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 99/248 (39%), Gaps = 25/248 (10%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102
           E   +YG +   A   N S  I +    ++   R    L W A     + V  V    + 
Sbjct: 98  EETRIYGENACQAMFKNRSEAIVRAWFVESVTPRFRNALKWMAANRKAYHV--VDEAELT 155

Query: 103 KIVGKE---------AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           K+ G E             GL  ET    +P  D V      + L+ V +PHN+G I+RS
Sbjct: 156 KVSGTEHHGGVCFLIKKRNGLDAETYLKDAPVKDCV------LALEDVGNPHNLGGIMRS 209

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   G+I  +  +  ES    ++A G  EHI  I   +L   L      G+  +  S
Sbjct: 210 CAHFGVQGVI-LQDVALLESGAAIRTAEGGAEHIKGIDADSLVTTLNNFRKAGYTIVTTS 268

Query: 214 S-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S      L +    +K+ L+LG E  GL     E       +   G++++LNVS A  + 
Sbjct: 269 SHKGSTALAKAELPEKMVLVLGQERDGLSDSAWEHGDMSLFVGGSGLVESLNVSVATGIM 328

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 329 LAEWWRQN 336


>gi|298571681|gb|ADI87833.1| hypothetical protein AKSOIL_0325 [uncultured bacterium Ak20-3]
          Length = 250

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 7/155 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  QL++ LDH+ DP N+GAI RSA  F    I+  K      +     ++ GA      
Sbjct: 93  KQDQLVLALDHITDPRNLGAIARSAAFFGVKYILIPKMRQVLLTPASVATSQGAFAFSEL 152

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETA 248
           + + NL  AL+K+   GF  I   +  +K  E+ I +  K+ L+LG+E KG+    ++ +
Sbjct: 153 VLVPNLGQALEKLKEEGFWVICADAKGEK-FEKVIGEYQKVVLLLGSEDKGVSELLKKRS 211

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNHFAK 282
             +  +      + +LNVS AA + L    N FAK
Sbjct: 212 DRVVSISTDTQTLDSLNVSVAAGILL----NGFAK 242


>gi|289450456|ref|YP_003475578.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185003|gb|ADC91428.1| RNA methyltransferase, TrmH family [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 267

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 4/147 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPY 189
           N + +++L+ V DP N+G+I RSA AF  D +I      SP+    L +SA G++ H+P 
Sbjct: 116 NWRRVLLLERVQDPGNLGSIWRSADAFGFDAVILAAGGASPNNRKTL-RSAMGSVFHVPV 174

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247
           +  S+   A   +    F     + D +   E   ++D  KIAL +G EG GL    ++ 
Sbjct: 175 LPFSDTEAAYTFLKQENFWIAAATLDGRPLAEIARRHDLPKIALAIGNEGNGLSSYARKE 234

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A +  ++ + G  ++LN + AA +  Y
Sbjct: 235 ADATVYIPISGKAESLNAACAAGILCY 261


>gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4]
          Length = 281

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 125/271 (46%), Gaps = 19/271 (7%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           + +K  ++I S+K+          + +KK+ +  +K R  +      + G H V  AL  
Sbjct: 26  VKEKSMKRIDSVKNEQV-------KGWKKLHT--KKGRDKAG--RFLIEGFHLVEEALK- 73

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
               I  +L T+  +  L W+    +   +  V PQ + +I   E   QG+A   A    
Sbjct: 74  AKFHIEVILMTEQTVLPLTWEV---YENDIIIVSPQVLKEISETET-PQGIAAVCAIPAP 129

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P++  +    LL  +D V DP NIG ++R+A A    G++  +      ++ + +++ G+
Sbjct: 130 PSMTTLSGQFLL--IDRVQDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRASQGS 187

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + H+P IR  +L + ++K+        G S              + ALI+G EG+G++ +
Sbjct: 188 IFHMPVIR-GSLIEWVEKLKEKNIPVFGTSLTEASSYTAIEPQPEFALIVGNEGEGVQSE 246

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E +    ++ + G  ++LNV+ A  + LY
Sbjct: 247 LLEGSDQNIYIPIYGQAESLNVAVATGILLY 277


>gi|259502996|ref|ZP_05745898.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169034|gb|EEW53529.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 288

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-- 192
           + VL+ + +P N+GAI RSA A   DGII T   +       ++ A G +  +P+  I  
Sbjct: 135 IAVLERIVNPANVGAIFRSAAALGIDGIIVTSDSADPLYRRSSRVAMGTVFQVPWTYIDA 194

Query: 193 -SNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  T  ++ +H  G+QT  ++   +  +    Q  + DK+A+ILG+EG GL  +T   +
Sbjct: 195 HTWQTAGVRLLHRLGYQTAAMALRHNTVRIDDPQLAQVDKLAIILGSEGPGLAEQTIAQS 254

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   + +LNV+ A+A+A +
Sbjct: 255 DFTIKIPMAAGVDSLNVAAASALAFW 280


>gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 254

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 67  VEMYIV----PEVIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|242038529|ref|XP_002466659.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
 gi|241920513|gb|EER93657.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
          Length = 345

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +    
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVS-GT 241

Query: 195 LTDALQKMHSWGFQTIG----LSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPK 243
             D    M  +G + +      SSD+        K L   + N+ + L+LG+EG GL  +
Sbjct: 242 WHDLHALMTKYGMKMMAGHPESSSDASKGIYSLSKELADSLLNESLCLVLGSEGNGLSAE 301

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           T + A  + ++ M G  ++LNVS A  + L++ Q
Sbjct: 302 TLQ-ACELVNIPMEGTFESLNVSVAGGIFLFMLQ 334


>gi|306818845|ref|ZP_07452567.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|304648531|gb|EFM45834.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 307

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 10/195 (5%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           P PV       ++++VG   +H+G +A    P L      +  S+ ++VL+ + D  N+G
Sbjct: 113 PIPVFVATEAVLEQLVGFH-LHRGAIASMERPALPDPAAILAQSRRVLVLEDLVDHTNVG 171

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A +RSA A + D I+ T   +        + + G +  +P+ R+    DA    H+ GF+
Sbjct: 172 AAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA-DLFHAAGFE 230

Query: 209 --TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              + L  D+   +   +++  D   K+AL+ GAE  GL+  T   A  +  + M   + 
Sbjct: 231 LAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVRIEMAHGVD 290

Query: 262 ALNVSNAAAVALYIT 276
           +LNV+ A AVA + T
Sbjct: 291 SLNVAGACAVACWAT 305


>gi|326525807|dbj|BAJ88950.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 333

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +   N
Sbjct: 177 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKALRAARGASLQLPIVS-GN 235

Query: 195 LTDALQKMHSWGFQTIG----LSSDS-------KKPLEQEIKNDKIALILGAEGKGLRPK 243
             D    +  +G +        SSD         K L   + ++ + L+LG+EG GL  +
Sbjct: 236 WCDLHALVTRYGMKMFAGHPESSSDGSARTHALSKELADSLVSESLCLVLGSEGNGLSEE 295

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           T + A  +  + M GI ++LNVS A  + L++ Q
Sbjct: 296 TVQ-ACDLVSIPMEGIFESLNVSVAGGIFLFMLQ 328


>gi|302389955|ref|YP_003825776.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
 gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
          Length = 265

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 10/240 (4%)

Query: 37  NQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           N + RH      LFL  G+     ALN+     F L+ + + L R            V  
Sbjct: 22  NYRKRH-----GLFLVEGLRATEEALNSDYLVEF-LVVSDDFLERHREKIKEYENIKVYE 75

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-LDHVNDPHNIGAILRSA 154
           VP +  D +   EA  QG+ +    + +  L ++     L+V LD + DP NIG I+R+A
Sbjct: 76  VPRKVYDTLSDTEA-PQGI-MAVVRMKNHELTSIYEDNFLIVALDGIKDPGNIGTIIRTA 133

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GI+  K      +  + +S  G++ H+P I   +L   L ++     + +    
Sbjct: 134 DAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLPVIEGVDLPVVLHELSQKRAKIVVTHL 193

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++K          + L+ G+E +G+ P+  + +T +  + MPG  ++LNV+ A  + L+
Sbjct: 194 GAEKSYFDADLTGPVVLVFGSEAEGVSPEILKISTEVVKIPMPGKAESLNVAVAGGIVLF 253


>gi|293394750|ref|ZP_06639041.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422701|gb|EFE95939.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 362

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 13/173 (7%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            QGL  +T    +P  D V      + L+ V +PHN+GAI+RS   F  +G++      P
Sbjct: 198 RQGLDAQTYLQSAPAKDCV------LALEEVGNPHNLGAIVRSCAHFGVNGVLLQ---DP 248

Query: 171 S--ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +  ES    ++A G  EHI  I   +    L      G+  +  SS     L Q     K
Sbjct: 249 ALLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSHKGTTLAQAKLPAK 308

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           + L+LG E  GL     +       +   G +++LNVS A  + L  +  QN 
Sbjct: 309 MVLVLGQERDGLSDSAWQQGDMSISIGGTGKVESLNVSVATGILLADWWRQNQ 361


>gi|213163301|ref|ZP_03349011.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 124

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 60/113 (53%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L 
Sbjct: 5   VIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLY 64

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 65  QSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 117


>gi|190575636|ref|YP_001973481.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190013558|emb|CAQ47193.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 277

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 111 HQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           H+GL  +       PL     D  +   L + LD V +PHN GAILRSA  F    ++  
Sbjct: 102 HEGLVADVLRAPVVPLAQWLADLEQGPVLALWLDGVGNPHNFGAILRSAAHFGVKALLLP 161

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
              + + S   A+ A G  E +P +++     A+ ++ S GF       +    + +   
Sbjct: 162 AGSTLALSGAAARVAEGGAESVPLVQLPETAQAMAQLRSAGFGLAATLVEGGDDVFRASL 221

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +++  ++GAEG+G+             +   G +++LNV++A AV L
Sbjct: 222 PERLVYVMGAEGEGMDRGLAGQCDLQVSIPGSGAVESLNVASATAVLL 269


>gi|153955807|ref|YP_001396572.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|219856174|ref|YP_002473296.1| hypothetical protein CKR_2831 [Clostridium kluyveri NBRC 12016]
 gi|146348665|gb|EDK35201.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
 gi|219569898|dbj|BAH07882.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 266

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 2/147 (1%)

Query: 129 VRNSQLLMVL-DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +++ Q   +L D + DP N+G I+RSA A    GIITTK      +    ++  G++ +I
Sbjct: 107 IKDEQGFYILADRIQDPGNMGTIIRSAHASGALGIITTKGTVDVYNEKTLRATMGSIFYI 166

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P I+  NL + +  +   GF+ I  S DS           KI + +G EG GL    ++ 
Sbjct: 167 PIIQDENL-EKVSTLRQMGFKLISSSLDSDINFYDMDLRGKIIIAIGNEGNGLLQDVKKI 225

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    ++ MPG  ++LN + AA++ ++
Sbjct: 226 SDIEVNIPMPGNAESLNAAVAASIMMF 252


>gi|329851903|ref|ZP_08266584.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328839752|gb|EGF89325.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 257

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 118/267 (44%), Gaps = 19/267 (7%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIF 69
           +I ++ D    +LR  +RD K         R  +  E LF+  G   +     +P     
Sbjct: 3   EIIAITDPSDVRLRL-YRDVKD--------RDLTGREGLFMAEGRVVIERLFVSPWCVCI 53

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDA 128
            +L T + L  LD   +     PV  V    +D++ G  A+H+G LAL      +   + 
Sbjct: 54  SVLTTPDRLKMLDI--SQAGDVPVYVVDQAIMDQVAGF-AIHRGYLALGRYSGPAGLGEV 110

Query: 129 VRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++  ++ ++ L  + +  N+G ++R+A AF  D ++              + + G +  +
Sbjct: 111 LKPGRVRVLALSTIANTDNMGGLMRNAAAFGVDAVLLDAACCDPLYRKAIRVSVGGVFQV 170

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P+IR+ NL +AL    + G     LS      L+     ++ A + GAEG GL P+    
Sbjct: 171 PHIRVPNLVEALT---AHGVAPYALSPSGAVVLDDVAPAERSAFLFGAEGPGLAPEVMAA 227

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
            TS+  + M G   +LNV+  + + LY
Sbjct: 228 CTSV-RIDMHGGFDSLNVATTSGIVLY 253


>gi|296104254|ref|YP_003614400.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058713|gb|ADF63451.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 361

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+GA++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 214 CVLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGD 272

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ DA+++    G+  +  SS +  PL +     K+ L+LG E  GL      +A     
Sbjct: 273 SVLDAIEQFRKAGYSIVTTSSHAGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVS 332

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359


>gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC
           13124]
          Length = 257

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +++ +L++++D V DP N+G I+R+A A    GI+ TK      +    +S  G++ +IP
Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   N  D ++ +   G++ +  S   K    +E    K+ + +G EG G+  +  + A
Sbjct: 165 IVE-DNSLDFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + MPG  ++LNV+ A ++ +Y
Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249


>gi|282864224|ref|ZP_06273280.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282560711|gb|EFB66257.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 274

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 15/185 (8%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPL------LSPTLDAVRNSQLLMVLDHVND 143
           PV  V P+  +++ G   VH+G   A+   PL      L+P    VR    + V + + D
Sbjct: 78  PVYAVTPELAERVTGYH-VHRGALAAMRRRPLPAVDTLLAPATGDVRR---VAVFEDIVD 133

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GA  R+A A   D ++ T R +        K + G++ H+P+ R+ +  D L  + 
Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLESWPDDLALLG 193

Query: 204 SWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + GF T  L  SD    L+  +   ++K+ALI G EG GL  +    A +   + M   +
Sbjct: 194 AAGFTTAALCLSDRSITLDALVARAHEKLALIFGTEGDGLTAQALAAADAHVRIPMDAGV 253

Query: 261 KALNV 265
            +LNV
Sbjct: 254 DSLNV 258


>gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
 gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
          Length = 265

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  +K R T      F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQT--KKERDTKGL--FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKESNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 SVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|218905788|ref|YP_002453622.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
 gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
 gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
 gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
 gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
 gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
 gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 265

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|71894373|ref|YP_278481.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
 gi|71851161|gb|AAZ43770.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 233

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 5/187 (2%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIG 148
           F V+ +    + K+    A HQG   E     S  ++ +  S+  +++VLDH+ D +N+G
Sbjct: 41  FKVEILSNLELSKLTN-NANHQGFVAELDFTYSD-INKIYESKPKIVLVLDHIMDTYNLG 98

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA A     I+  K      ++ + K +SG    I + ++S+L   L K+    + 
Sbjct: 99  AIIRSANAAGIKDIVMPKENCADITSNVLKVSSGGFIGINFYKVSSLNAFLNKLKKHSYW 158

Query: 209 TIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             G   D         K N  +A ILG E KG+            H+   G +++LNVS 
Sbjct: 159 IYGSMLDKNSTSYYSAKYNFPMAFILGNEEKGISKSALVEVDEKIHIPQSGSVESLNVSV 218

Query: 268 AAAVALY 274
           AA + L+
Sbjct: 219 AAGILLF 225


>gi|308812149|ref|XP_003083382.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
 gi|116055262|emb|CAL57658.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
          Length = 320

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 19/179 (10%)

Query: 111 HQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+ L+   L  PT++       V +  + + LD V DP N+GA+LRSA     DGI+ 
Sbjct: 138 HQGVLLDAEALEIPTVEELPRWNGVGSPPVWLALDEVVDPQNLGAMLRSAHFLGVDGIVV 197

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             + S   +A ++K+++GA+E     R   +   L +    G+  +G ++D   P  + I
Sbjct: 198 CTKNSAPFNATVSKASAGAMEAQVVHRTGVMHRFLARARDDGWDVVGAAAD---PRAENI 254

Query: 225 KNDKIA----LILGAEGKGLRPKTQETATSMAHLHMPGI-----IKALNVSNAAAVALY 274
              ++A    L++G EG G+R   +     +  +   G+     + +LNVS AA + ++
Sbjct: 255 HAFEVAAPTVLVVGNEGVGIRTNVRRACNRLVSIPR-GVSATDGVDSLNVSVAAGILIH 312


>gi|256255515|ref|ZP_05461051.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94]
 gi|261222725|ref|ZP_05937006.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
 gi|260921309|gb|EEX87962.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
          Length = 249

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 13/245 (5%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R  ++ + + L  + + SA 
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQRFIAEGK-VVLNVLFSSSAR 58

Query: 61  LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-- 116
               S     LL  +N L  L +    LP   PV +VP   +D + G   VH+G LA+  
Sbjct: 59  FETES-----LLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGR 112

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +         
Sbjct: 113 RKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRK 172

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG 
Sbjct: 173 AIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGT 232

Query: 236 EGKGL 240
           EG+GL
Sbjct: 233 EGEGL 237


>gi|254283647|ref|ZP_04958615.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
           proteobacterium NOR51-B]
 gi|219679850|gb|EED36199.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
           proteobacterium NOR51-B]
          Length = 250

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 70/143 (48%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD V +P N+G I+RSAVA    GI+  ++   S   ++ K+++G L   P I    
Sbjct: 105 VLALDGVTNPQNVGMIIRSAVASGIGGILYPRKGVASLGPLVIKASAGTLFKAPIISCET 164

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L  AL++    G   + L   +   L  +  +     +LG E  G+   T+  AT    +
Sbjct: 165 LAPALRQCLENGLDIVALDGAAPDSLFGDRPSRAAVYVLGGETHGVSDATRSLATRSLSI 224

Query: 255 HMPGIIKALNVSNAAAVALYITQ 277
            M G +++LNV+  AA+  Y  Q
Sbjct: 225 PMAGGVESLNVAVTAALIGYAAQ 247


>gi|301108904|ref|XP_002903533.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
 gi|262097257|gb|EEY55309.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
          Length = 326

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 14/160 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI---- 187
           S +++VLD ++DP N GAILRSA    C  ++ + R +   S  +++++ GALE +    
Sbjct: 169 SPVILVLDEIHDPQNFGAILRSAHFLGCSAVVVSDRNTAPLSPAVSRASVGALEVMVAND 228

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
             ++  NL + L     +G++ +G SS        ++ + +   L++G E +GLR   ++
Sbjct: 229 KLMKARNLHEMLAVSGDFGWRVVGASSGPNSVTSTKLSDGQPTILVMGNEHRGLRKHIRQ 288

Query: 247 TATSMAHLHMPG-------IIKALNVSNAAAVALYITQNH 279
               +  + +PG        + +LNVS A+A+ LY   +H
Sbjct: 289 CCQDV--VIIPGQATDEDTRVDSLNVSVASAILLYELLHH 326


>gi|56964446|ref|YP_176177.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
 gi|56910689|dbj|BAD65216.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
          Length = 246

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD V DP N+G I+R+A+A    G++     +   +A + ++  GAL H+P + + +
Sbjct: 104 FVLLDRVQDPGNVGTIIRTALAADAAGVVLGSGCADLFNAKVIRATQGALFHLP-VYMGD 162

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   ++ +   G    G S     P +Q    ++ AL+LG EG+G++    + AT    +
Sbjct: 163 LVTWIEALKESGIPVYGTSLQDATPHDQFHSQEQFALLLGNEGEGVQSHLLDAATENLFI 222

Query: 255 HMPGIIKALNVSNAAAVALY 274
                 ++LNVS AA + L+
Sbjct: 223 RQNRKAESLNVSVAAGILLF 242


>gi|261343573|ref|ZP_05971218.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282568722|gb|EFB74257.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 368

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 119/289 (41%), Gaps = 32/289 (11%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           ISK+ SE+   L++ H     ++  D ++++   Q        E   +YG +   A   N
Sbjct: 94  ISKQDSEE---LENDHGGISGKSQIDPEQLRKQRQ--------EETRIYGENACQAMFKN 142

Query: 64  PSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--- 116
               I +    ++   R    L W A     + V  V  + ++K  G E  H G+     
Sbjct: 143 RPDGIVRAWFLQSVTPRFRDALKWMAANRKAYHV--VDAEELEKASGTEH-HGGVCFIIK 199

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                     L    ++  ++ L+ V +PHN+G I+RS   F   G+I  +     ES  
Sbjct: 200 KRGGMQAEAYLQEAADTDCVLALEDVGNPHNLGGIMRSCAHFGIQGVI-LQDAGMLESGA 258

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIAL 231
             ++A G  EH+  I     T  L+K    G+  +  SS       Q+I       K+ L
Sbjct: 259 AIRTAEGGAEHVKAIDADGFTPTLEKFRQAGYTIVTTSSHKGS---QDIAKVQLPKKMVL 315

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +LG E  GL   T +      ++   G +++LNVS A  + L  + +QN
Sbjct: 316 VLGQESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVATGIMLSQWWSQN 364


>gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13]
          Length = 252

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            Q     + G H V  AL      + +++ +++     +WD N  H   +  VP   + K
Sbjct: 25  EQSGTFIIEGFHLVEEALK-VDNLVEEIIISEDRSIPSEWDLN--HVELIYAVP--NVLK 79

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            + +    QG+A      +   L    N ++L+ LD+V DP N+G ++R+A A   D +I
Sbjct: 80  EISETETPQGVAAICRIPVQHDLTLQPNQKILL-LDNVQDPGNVGTMIRTADAAGMDMVI 138

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  +   S+ + +S  G++ H+P  R  +L   +++         G S  +  P ++ 
Sbjct: 139 LGEGCADLYSSKVIRSTQGSIFHLPIAR-GDLKTYIKQCKELQTPVYGTSLQNGVPFQEV 197

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++  ALILG EGKG+  +  E      ++ + G  ++LNV  AA + +Y
Sbjct: 198 QSSNTFALILGNEGKGMAQEHLEMTDQNLYIPIHGQSESLNVGVAAGILMY 248


>gi|297626567|ref|YP_003688330.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922332|emb|CBL56904.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 286

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 5/148 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+++   V DP N G ++R A AF  D ++ T       +    +++ G++ H+P I  
Sbjct: 122 RLVVICAQVRDPGNAGTVVRCADAFGADAVVLTHGSVDITNPKTVRASVGSIFHLPIISG 181

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
             LT A++  H+ G Q +  +  S +P++      ++    A ++G E  GL     E A
Sbjct: 182 VELTGAIEWAHASGLQVLA-ADGSGQPVDLMAGAGQLGQPTAWLMGNEAWGLPRHDLELA 240

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +A + M G  ++LN+S AAA+ LY T
Sbjct: 241 DRVAAVPMWGAAESLNLSTAAAICLYAT 268


>gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599]
 gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599]
          Length = 271

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 23/258 (8%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93
           Q  ++K R   Q     + G H V  AL + +  +  +   +  +      A   HP  V
Sbjct: 19  QLLSRKGREEQQ--RFLVEGAHLVEEALKSGAEVVTVIYDQQRDMDPACQRALANHPEAV 76

Query: 94  KTVP-PQTIDKIVGKEAVHQGLALE---TAPLLSPTLDAVRNSQ---LLMVLDHVNDPHN 146
           + +  P+T+   + +    QG+  E   TA   +  +D  R  Q   LL+ LD + DP N
Sbjct: 77  QVIAAPETVLAKLSETKSPQGIVAEVKKTAADWAKWVDQKREEQGSLLLLFLDEIQDPGN 136

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ILR+A A + DG++         +  + ++  GAL  IP +   +L D   +  + G
Sbjct: 137 LGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRATMGALFRIP-VFTQSLVDTADEWKAKG 195

Query: 207 FQTIGLSSDSKKPLEQ-EIKNDK------IALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            + + +SS     LEQ  +  D+       AL++G EG+G+  +    A    H+ + G 
Sbjct: 196 GRVL-ISS-----LEQNSVSYDEADYAGLTALVIGNEGRGVSKEMFAKADQFVHIPLYGG 249

Query: 260 IKALNVSNAAAVALYITQ 277
            ++LN + AA + +Y  Q
Sbjct: 250 AESLNAAVAAGIFVYEAQ 267


>gi|19745515|ref|NP_606651.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|94989802|ref|YP_597902.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94993688|ref|YP_601786.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|139474366|ref|YP_001129082.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|19747633|gb|AAL97150.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
 gi|94543310|gb|ABF33358.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94547196|gb|ABF37242.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|134272613|emb|CAM30880.1| SpoU rRNA Methylase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 245

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           +VL+ V DP N+G I+R+A A   DG+  +++ +   +    +S  G+  H+P  R  + 
Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251
            L   LQ+  +     I  ++ SKK ++ +    ++++AL+LG EG+G+  +    A  +
Sbjct: 164 QLCRELQEYKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|220928862|ref|YP_002505771.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
 gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
          Length = 269

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 121/279 (43%), Gaps = 27/279 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I   ++  I  +K  H  K R  H  Y                   F+ G+  VS A
Sbjct: 1   MNYIQSSQNSTIKDIKSLHLKKNRDAHGLY-------------------FVEGIRFVSDA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVK----TVPPQTIDKIVGKEAVHQGLAL 116
           ++N  + I +++ ++  L  L+  + L           ++ P+ I + V      QG+ L
Sbjct: 42  IDN-GQSIAKIIISEK-LEGLNGGSELIEKVKGACSDISLVPEKIFREVSDTQTPQGI-L 98

Query: 117 ETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                   + D V      +++LD + DP N G I+R+A A     ++ +K      S  
Sbjct: 99  AVIKKNKYSFDKVITEGSSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPK 158

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + +S  G++ HIP     N+T+ ++ +    ++ I      K    QE    + A+I+G 
Sbjct: 159 VLRSTMGSVFHIPIFEGLNITEIIRVLKQNDYKVIASHLSGKNNYFQEDLTGRSAIIVGN 218

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E  G+  +T   A S+  + MPG  ++LN S AA+V +Y
Sbjct: 219 EANGISDETAYMADSLVKIPMPGKAESLNASVAASVMIY 257


>gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
 gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
          Length = 265

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
 gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           A1055]
 gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
          Length = 254

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|21909794|ref|NP_664062.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28896513|ref|NP_802863.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|306827961|ref|ZP_07461228.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|21903979|gb|AAM78865.1| putative spoU rRNA Methylase family protein [Streptococcus pyogenes
           MGAS315]
 gi|28811767|dbj|BAC64696.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
 gi|304429880|gb|EFM32922.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 245

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           +VL+ V DP N+G I+R+A A   DG+  +++ +   +    +S  G+  H+P  R  + 
Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251
            L   LQ+  +     I  ++ SKK ++ +    ++++AL+LG EG+G+  +    A  +
Sbjct: 164 QLCRELQEYKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
 gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
 gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
 gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
 gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
 gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
 gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817345|ref|YP_002817354.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
           684]
 gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
 gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
 gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
 gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
 gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
 gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
 gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
 gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
           684]
 gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
          Length = 265

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLKEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|253563391|ref|ZP_04840848.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947167|gb|EES87449.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 270

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P L    +  R ++ ++V+D V D  NIGAI RSA A   D ++ T+      +    + 
Sbjct: 107 PELRSVEEVCREAKRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKND-KIALILGAE 236
           + G++  + +  I     +L ++   GF+T+   L+ DS    +  +K + K+A+I+G E
Sbjct: 167 SMGSIFLVSWTWIDG---SLSRLGDLGFRTVAMALTDDSISIDDPVLKTEPKLAIIMGTE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G GL  +T   A  +  + M   + +LNV+ AA+VA +
Sbjct: 224 GDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFW 261


>gi|88705071|ref|ZP_01102783.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71]
 gi|88700766|gb|EAQ97873.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71]
          Length = 257

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 112 QGLALETAPLLSPTLDA-VRNS----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           QG+AL+        LDA +R+     Q ++ LD V +P N+G ++RSA A    G+I   
Sbjct: 83  QGVALDVYCAAMGELDAYLRDMSDAPQRILALDGVTNPQNMGMVIRSAAAAGIQGLIYAD 142

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIK 225
           R +P+   ++ K+++G +   P +R   + D  +++   GF    L +D ++ L + +  
Sbjct: 143 RGNPALGPLVIKASAGTVFRAPLLRCQTVMDGARQLSDAGFTLYRLQADGRRSLFDGQDF 202

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +   +LG E  G+    +        + M   +++LNV+ + A+  YI 
Sbjct: 203 AQRALFVLGGESDGISEALRGLPGENLSIPMRNGVESLNVAVSGALVAYIA 253


>gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
           5427]
 gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
           5427]
          Length = 263

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 16/161 (9%)

Query: 124 PTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVL 176
           PT D V     +   +VL+++ DP N+G I+R+A AF   G+  TK     YSP     +
Sbjct: 99  PTYDLVHFNIEAGHYLVLENLQDPGNLGTIIRTAHAFDFKGVFITKGSVDLYSPK----V 154

Query: 177 AKSASGALEHIPYI---RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
            +S   +L H+P +    I    D L++     + T  +     KP+      +K+A+I+
Sbjct: 155 VRSTMSSLFHVPIVIEEEIDTYMDFLKQKGVTLYTTALIP--GAKPIYDVTFEEKVAIII 212

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G EG G+  + +E +     + MPG  ++LN + A ++ +Y
Sbjct: 213 GNEGNGVSERVKEASDHTVIIPMPGAAESLNAAIATSICMY 253


>gi|239978462|ref|ZP_04700986.1| rRNA methylase [Streptomyces albus J1074]
 gi|291450358|ref|ZP_06589748.1| rRNA methylase [Streptomyces albus J1074]
 gi|291353307|gb|EFE80209.1| rRNA methylase [Streptomyces albus J1074]
          Length = 267

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 7/179 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           PV  V P+  +++ G   VH+G   A+E  PL  P  D +  ++ + VL+ + D  N+GA
Sbjct: 78  PVHLVTPELAEQVTGYH-VHRGALAAMERKPLPDPA-DILTTARRVAVLEDIVDHANVGA 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
             R+A A   D ++ + R +        K + GA+  +P+ R+ +       +   GF T
Sbjct: 136 AFRNAAALGVDAVLLSPRCADPLYRRAVKVSMGAVLQLPWTRLPDWPAGAGLLGRHGFLT 195

Query: 210 IGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  +     E+   + +K+AL+ G EG GL P     A +   + M   I +LNV
Sbjct: 196 AAFCLGDRSITLDELAARRPEKLALMFGTEGDGLTPGALAAADTWVRIPMDAGIDSLNV 254


>gi|237721658|ref|ZP_04552139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449454|gb|EEO55245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 267

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 6/151 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  R ++ + V++ V D  NIGAI RSA A   D I+ T+      +    + + G++  
Sbjct: 114 EICRGARRIAVIEGVVDTTNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFL 173

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKGLRPK 243
           IP+   + L  +  ++H  GF+T+ ++   K   ++  I     K+A+++G EG GLR +
Sbjct: 174 IPW---AWLDGSPNELHKLGFRTVAMALTEKSISIDSPILATEPKLAIVMGTEGDGLRNE 230

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           T   A  +  + M   + +LNV+ A+A+A +
Sbjct: 231 TITEADYVVRIPMANGVDSLNVAAASAIAFW 261


>gi|71902954|ref|YP_279757.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|71802049|gb|AAX71402.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
          Length = 245

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           +VL+ V DP N+G I+R+A A   DG+  +++ +   +    +S  G+  H+P  R  + 
Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251
            L   LQ+  +     I  ++ SKK ++ +    ++++AL+LG EG+G+  +    A  +
Sbjct: 164 QLCRELQEYKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|315150158|gb|EFT94174.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0012]
          Length = 258

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|311742538|ref|ZP_07716347.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314166|gb|EFQ84074.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 270

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 2/167 (1%)

Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           VH+G LA    P   P    +  ++ ++VL+ + D  N+GAI RSA A   D ++ + R 
Sbjct: 95  VHRGALAALERPPARPAATVLAGARRVVVLEDLVDHTNVGAIFRSAAALGWDAVLLSPRC 154

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND 227
           +        K + GA+  +P+ R+ +     + +   GF  + ++  +   P+++   + 
Sbjct: 155 ADPLYRRSIKVSMGAVFRLPWARVDDWASTPELLADAGFTAVAMTLGEGAVPIDEVDTDR 214

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +AL++G+EG GL    +  +   A + M   I +LNV+ + AVA +
Sbjct: 215 PLALVVGSEGHGLTRHWESASPVRATIPMAEDIDSLNVAASVAVACW 261


>gi|254518665|ref|ZP_05130721.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226912414|gb|EEH97615.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 260

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +V D V DP N+G I+R+  A   DGII TK      +    +S  G++ ++P     
Sbjct: 112 FFLVCDKVQDPGNLGTIIRTGHAAGVDGIILTKGTVDIYNDKTIRSTMGSIFYVPIFYDD 171

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
                ++K+   G   +  S +  K   +E    KI L +G EG G+  +  E A+    
Sbjct: 172 EDFSIIKKLKDNGVALVTTSLEESKNFFEENLKGKIMLAVGNEGNGISNELFELASKKVK 231

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ A ++ L+
Sbjct: 232 IPMPGGAESLNVAIATSIILF 252


>gi|219670018|ref|YP_002460453.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219540278|gb|ACL22017.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 275

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     +  + G +     L     P L    +   ++  + VL+ + D  N+GAI
Sbjct: 79  IPVYTADRNLLAGLTGFQLTRGVLCAMRRPHLPSVEEVCADASRVAVLEGIADSTNMGAI 138

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTD----ALQKMHSW 205
            RSA A   D ++ T            + + G +  +P+ RI S L+      ++ +   
Sbjct: 139 FRSAAALGIDAVLLTPSCCDPLCRRGVRVSMGTIFQVPWARIGSELSQWPQQGMKILRKL 198

Query: 206 GFQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF+T+ ++ + K       Q +  +K+A++LG+EG GL P T       A + M   + +
Sbjct: 199 GFKTVAMALNDKAVSIDDSQLMAEEKLAIVLGSEGNGLAPGTIADCDYTACIPMSHNVDS 258

Query: 263 LNVSNAAAVALY 274
           LNV+ A+AVA +
Sbjct: 259 LNVAAASAVAFW 270


>gi|257087434|ref|ZP_05581795.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
 gi|257416641|ref|ZP_05593635.1| 23S rRNA methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257419857|ref|ZP_05596851.1| rRNA methylase [Enterococcus faecalis T11]
 gi|257421954|ref|ZP_05598944.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|256995464|gb|EEU82766.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
 gi|257158469|gb|EEU88429.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG]
 gi|257161685|gb|EEU91645.1| rRNA methylase [Enterococcus faecalis T11]
 gi|257163778|gb|EEU93738.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|315025411|gb|EFT37343.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX2137]
 gi|315155336|gb|EFT99352.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0043]
 gi|315173665|gb|EFU17682.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1346]
          Length = 258

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|238755721|ref|ZP_04617055.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
           ATCC 29473]
 gi|238706088|gb|EEP98471.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
           ATCC 29473]
          Length = 372

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 13/172 (7%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            QGL  ET    +P  D V      + L+ V +PHN+GAI+R+   F  +G++      P
Sbjct: 207 RQGLDAETYLQQAPKQDCV------LALEEVGNPHNLGAIMRTCAHFGINGVLLQ---DP 257

Query: 171 S--ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +  ES    ++A G  EHI  I   +    L    + G+  +  SS     L +     K
Sbjct: 258 AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRNAGYTIVTTSSHKGTSLSKAELPAK 317

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           + L+LG E  GL     +       +   G +++LNVS A  + L  +  QN
Sbjct: 318 MVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQN 369


>gi|311278485|ref|YP_003940716.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
 gi|308747680|gb|ADO47432.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
          Length = 352

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+GA++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 205 CVLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGD 263

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ +A+++  S G+  +  SS    PL +     K+ L+LG E  GL      +A     
Sbjct: 264 SVLEAIEQFRSAGYTIVTTSSHEGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVS 323

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           ++  G +++LNVS A  V L  +  QN
Sbjct: 324 INGTGNVESLNVSVATGVLLAEWWRQN 350


>gi|198274931|ref|ZP_03207463.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
 gi|198272378|gb|EDY96647.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
          Length = 269

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 9/195 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + + ++ G       L     P   P  +  R ++ ++V+  V D  NIGAI
Sbjct: 78  LPVYTGDRELLARLTGYTLTRGVLCAMRRPAPRPVEEVCRGARRVVVIHGVVDTTNIGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++ T       +    + + G++  +P+  +      L+++   GF+T 
Sbjct: 138 FRSAAALGIDAVLLTTDSCDPLNRRAVRVSMGSVFLVPWTWVDR---PLEQLKELGFRTA 194

Query: 211 GLS-SDSKKPLEQ-EIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++ +D   PL+   +K + ++AL++G EG GL     E A  +  + M   + +LNV+ 
Sbjct: 195 AMALTDRSVPLDYPPLKEEPRLALVMGTEGDGLPEAAIEGADYVVRIPMAHGVDSLNVAA 254

Query: 268 AAAVALY---ITQNH 279
           A+AVA +     +NH
Sbjct: 255 ASAVAFWELRCGENH 269


>gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 270

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 12/253 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVS---AALNNPSRKIFQLLATKNALARLDWDA 85
           D++ + S +++    S    +   GV  V    A+   P      LL T   L  L  D 
Sbjct: 17  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTPR----ALLGTDRRLTELGTDL 72

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +     P      + + ++VG       LA  + P      DA+  ++ + VL+ VND  
Sbjct: 73  DAVDA-PFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARAVAVLEGVNDHE 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I R+A     D +I     +        + + G    +P+ R +   D L  +   
Sbjct: 132 NLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFARAATWPDELNTLRDK 191

Query: 206 GFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           GFQ + ++    +D+       +  +K+A ++GAEG GL  +    +     + M     
Sbjct: 192 GFQLLAMTPDPAADTLATAMTALAGEKVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTD 251

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AAA+A Y
Sbjct: 252 SLNVATAAALAFY 264


>gi|332295141|ref|YP_004437064.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
 gi|332178244|gb|AEE13933.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
          Length = 253

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 73/137 (53%), Gaps = 5/137 (3%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+G ILRS++AF C GI  ++      +  + +S++GA   +P+ R  N +D
Sbjct: 112 LDKIQDPGNLGTILRSSLAFGCGGIFLSEDSCNIYNPKVIRSSAGAFFKVPF-RKRNFSD 170

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            ++ M +   +    S  +K+P      + +  L+ G EG+G+  + +  + S   +++P
Sbjct: 171 IVRDMDT-SLRVFSFSPRAKEPFFLHNYDGRCLLVFGNEGRGISSEIE--SKSYKRVYIP 227

Query: 258 GI-IKALNVSNAAAVAL 273
              +++LNV+    + L
Sbjct: 228 TQNVESLNVAMCVNIVL 244


>gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
 gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Kruger B]
 gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Vollum]
 gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Australia 94]
 gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames]
 gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne]
          Length = 254

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLKEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|312899832|ref|ZP_07759151.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0470]
 gi|311293082|gb|EFQ71638.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0470]
 gi|315170301|gb|EFU14318.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1342]
          Length = 258

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|18310871|ref|NP_562805.1| RNA methyltransferase, TrmH family [Clostridium perfringens str.
           13]
 gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
           str. F4969]
 gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13]
 gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
           str. F4969]
          Length = 257

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +++ +L++++D V DP N+G I+R+A A    GI+ TK      +    +S  G++ +IP
Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   +L D ++ +   G++ +  S   K    +E    K+ + +G EG G+  +  + A
Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + MPG  ++LNV+ A ++ +Y
Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249


>gi|300870064|ref|YP_003784935.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
           95/1000]
 gi|300687763|gb|ADK30434.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
           95/1000]
          Length = 237

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 6/187 (3%)

Query: 93  VKTVPPQTIDKIVGK-----EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           +K V  + ++ IVGK      +V +   +     L   L+   ++ L+ +LD + D HN+
Sbjct: 45  IKNVDKREMESIVGKVYSIAASVKENAEIGIDVFLDRALEKT-STPLIFILDSITDVHNL 103

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+A  F   GII  K  +   +  + + ++GA  H+P    +NL   ++ M   GF
Sbjct: 104 GAIIRNAYFFDLGGIIIPKDNAAPINEKVYEISAGAAYHLPISIETNLNRVIEIMKDKGF 163

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                S      LE    +   A+ILG E  G+R   ++ +     +       +LNVS 
Sbjct: 164 WVYYASEKGDTSLENFKFDTPTAIILGNEHSGVRDSLKKNSDGSIIIRAQSDFDSLNVSA 223

Query: 268 AAAVALY 274
           A+A+  Y
Sbjct: 224 ASAIISY 230


>gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426]
          Length = 251

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 117/251 (46%), Gaps = 16/251 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           + +KK+    +K R  +    LFL  G H V  A+ + +  + +L+  +       W+  
Sbjct: 13  KQWKKL--LTKKGRDET---GLFLLEGFHLVEEAIKS-NAPLVELIVDERTAVPPGWNVT 66

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV T+  + + + +      QG+A      LS  L+ V+ +   +++D V DP N
Sbjct: 67  ---GVPV-TIVTEAVMRAISSTETPQGIA-AVCRQLSTELEGVKTA---LLIDAVQDPGN 118

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ++R+A +   D +I  +  +   +  + ++  G+L H+P ++  +L   + +    G
Sbjct: 119 LGTMIRTADSAGIDAVILGEGCADLYNPKVVRATQGSLFHLPVVK-GDLAQWIARFKEQG 177

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G + ++        ++   AL++G EG G+RP      T   ++ + G  ++LNV+
Sbjct: 178 IPVYGTALENAVDYRTVPQSSSFALLVGNEGSGVRPDLLRLTTENVYIPIYGRAESLNVA 237

Query: 267 NAAAVALYITQ 277
            AA + LY  Q
Sbjct: 238 VAAGILLYSLQ 248


>gi|315638089|ref|ZP_07893274.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481937|gb|EFU72556.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
          Length = 229

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 2/161 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG  ++           ++ S+ +++L  ++D  NIGAI+R+A A   DG++   +   
Sbjct: 61  HQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNIGAIIRTAYALGVDGLLFIGKNLA 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            ES V  +S+SGA   +P    ++   AL ++    F+  G     ++         K  
Sbjct: 121 QESIV--RSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGKKV 178

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           LI+G+EG GL  K  +       + M     +LNVS A A+
Sbjct: 179 LIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAI 219


>gi|29376897|ref|NP_816051.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227553934|ref|ZP_03983981.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229545177|ref|ZP_04433902.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|229549425|ref|ZP_04438150.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255972129|ref|ZP_05422715.1| predicted protein [Enterococcus faecalis T1]
 gi|256763096|ref|ZP_05503676.1| rRNA methylase [Enterococcus faecalis T3]
 gi|256853763|ref|ZP_05559128.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256961303|ref|ZP_05565474.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256963570|ref|ZP_05567741.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|257079635|ref|ZP_05573996.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|257082019|ref|ZP_05576380.1| rRNA methylase [Enterococcus faecalis E1Sol]
 gi|257084570|ref|ZP_05578931.1| rRNA methylase [Enterococcus faecalis Fly1]
 gi|293383588|ref|ZP_06629498.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
 gi|293387299|ref|ZP_06631856.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
 gi|294780915|ref|ZP_06746269.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
 gi|307270842|ref|ZP_07552129.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4248]
 gi|307271508|ref|ZP_07552780.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0855]
 gi|307287718|ref|ZP_07567761.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0109]
 gi|312906138|ref|ZP_07765150.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 512]
 gi|312909483|ref|ZP_07768338.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 516]
 gi|312953482|ref|ZP_07772322.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0102]
 gi|29344362|gb|AAO82121.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
 gi|227176920|gb|EEI57892.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229305662|gb|EEN71658.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229309722|gb|EEN75709.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|255963147|gb|EET95623.1| predicted protein [Enterococcus faecalis T1]
 gi|256684347|gb|EEU24042.1| rRNA methylase [Enterococcus faecalis T3]
 gi|256710706|gb|EEU25749.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256951799|gb|EEU68431.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256954066|gb|EEU70698.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|256987665|gb|EEU74967.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|256990049|gb|EEU77351.1| rRNA methylase [Enterococcus faecalis E1Sol]
 gi|256992600|gb|EEU79902.1| rRNA methylase [Enterococcus faecalis Fly1]
 gi|291079100|gb|EFE16464.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
 gi|291083336|gb|EFE20299.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
 gi|294452041|gb|EFG20489.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
 gi|306501456|gb|EFM70759.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0109]
 gi|306511780|gb|EFM80778.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0855]
 gi|306512755|gb|EFM81400.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4248]
 gi|310627784|gb|EFQ11067.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 512]
 gi|310628691|gb|EFQ11974.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0102]
 gi|311290156|gb|EFQ68712.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 516]
 gi|315030220|gb|EFT42152.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX4000]
 gi|315144757|gb|EFT88773.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2141]
 gi|315152149|gb|EFT96165.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0031]
 gi|315159088|gb|EFU03105.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0312]
 gi|315161681|gb|EFU05698.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0645]
 gi|315164817|gb|EFU08834.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1302]
 gi|315574365|gb|EFU86556.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0309B]
 gi|315580160|gb|EFU92351.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0309A]
 gi|323481392|gb|ADX80831.1| SpoU type rRNA methylase [Enterococcus faecalis 62]
 gi|327535688|gb|AEA94522.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329572242|gb|EGG53902.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467]
          Length = 258

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|315640649|ref|ZP_07895754.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
 gi|315483588|gb|EFU74079.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
          Length = 251

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 37/276 (13%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           S K+++  +L++ HR         +K R   Q     L G H V  A+N+ +  +  L++
Sbjct: 5   STKNTYVKELKKLHR---------KKGRQDQQ--RYLLEGFHLVEEAVNSQAEVVDILIS 53

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            + A    +W A +       T   + +   + ++   QG+    A +  P +  +R   
Sbjct: 54  PRGAK---EWAAWIEEQALDVTYVSEEVMAAISEQPTPQGI---MAVVALPRVKEMRVKG 107

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD+V DP N+G ++R+A A    G+   +  +   +    +S  G+  HI  I+  
Sbjct: 108 KWLLLDNVQDPGNVGTMIRTADAAGFTGVFLGEGTADIYNLKTLRSMQGSHFHIE-IQNG 166

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI------KNDKIALILGAEGKGLRPKTQET 247
            + D  Q      F+ +G+     +  EQ +      K D++ALI+G EG+G+  +    
Sbjct: 167 TIQDICQV-----FKEVGIPVYGSELNEQAVAYDTVEKTDQVALIMGNEGQGVAKEI--L 219

Query: 248 ATSMAHLHMP--GIIKALNVSNAAAVALYITQNHFA 281
           A + A+L++P  G  ++LNV  AA + +Y    HF+
Sbjct: 220 AQTDANLYIPIYGKAESLNVGIAAGILMY----HFS 251


>gi|257090594|ref|ZP_05584955.1| predicted protein [Enterococcus faecalis CH188]
 gi|312905124|ref|ZP_07764245.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0635]
 gi|256999406|gb|EEU85926.1| predicted protein [Enterococcus faecalis CH188]
 gi|310631514|gb|EFQ14797.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0635]
 gi|315166404|gb|EFU10421.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1341]
 gi|315579047|gb|EFU91238.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0630]
          Length = 258

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101]
          Length = 257

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +++ +L++++D V DP N+G I+R+A A    GI+ TK      +    +S  G++ +IP
Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   +L D ++ +   G++ +  S   K    +E    K+ + +G EG G+  +  + A
Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + MPG  ++LNV+ A ++ +Y
Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249


>gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
 gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
          Length = 260

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 9/236 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           H ++     + G   V  AL +  +   IF   + K+     D  + L     +  V  Q
Sbjct: 23  HRTKNNQFLIEGFRFVEEALKSEFQVPMIFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQ 82

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + K++      QG+   TA + +  L+        +++D V DP N+G I+R+A A   
Sbjct: 83  VL-KLLSDTETPQGI---TAVVDNKELNVENKEGFYVLVDKVQDPGNMGTIIRTAHASKA 138

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I TK      +    +S  G++ H+P I+ ++L + +  +   GF  +  S ++ K 
Sbjct: 139 LGVIITKGTVDIYNEKTLRSTMGSIFHVPVIQDNDL-NKVNFLKEKGFNLVASSLNTDKN 197

Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + ++K  KI + +G EG G+  +    A     + MPG  ++LNVS AA V ++
Sbjct: 198 FYDVDLKGKKI-IAVGNEGSGISDEIYNMADIKVKIPMPGGAESLNVSVAAGVMMF 252


>gi|229492736|ref|ZP_04386537.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
 gi|229320395|gb|EEN86215.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
          Length = 276

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 6/218 (2%)

Query: 62  NNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           N  +R +  L  T++A  R     D  L     V  V  + I K +       GL   + 
Sbjct: 47  NGEARPVHDLFYTEDAAERYQHVIDRALTAGVSVALVTDRAI-KALSDTVTPPGLVAVSD 105

Query: 120 PLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            L  P   AV + ++LL V   VN+P N G ++R A A   D  I         +  + +
Sbjct: 106 LLDVPLSAAVHQETRLLAVPVEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVR 165

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAE 236
           S++G+L H+P +R  +    ++++ + G Q +  ++D +  L++  E+ +   A + G E
Sbjct: 166 SSAGSLFHLPVVRDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSKPTAWLFGNE 225

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL P     A     + + G  ++LN++ AAA+ LY
Sbjct: 226 AHGLDPAIAAQADHRVRIPIHGRAESLNLATAAAICLY 263


>gi|315146678|gb|EFT90694.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4244]
          Length = 258

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|302561652|ref|ZP_07313994.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302479270|gb|EFL42363.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 277

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 24/194 (12%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL-----------------ALETAPLLSPTLDAVRNSQL 134
           PV  V P   +K+ G   VH+G                   + T P  +P   AVR    
Sbjct: 75  PVYVVEPALAEKVTGYH-VHRGALASMQRTPLPTAADVLRGVGTMPSSAPREAAVRR--- 130

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + V + + D  N+GA  R+A A   D ++ T R +        K + GA+ H+P+ R+++
Sbjct: 131 VAVFEDLVDHANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGAVFHVPWTRLTS 190

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSM 251
                      GF T  L  D K    +E+   +++K+ L+LG EG GL      +A   
Sbjct: 191 WPQDAGIFREHGFVTAALCLDEKSITLEELAARRHEKLVLMLGTEGDGLSADALRSADEW 250

Query: 252 AHLHMPGIIKALNV 265
             + M G + +LNV
Sbjct: 251 VRIPMSGGVDSLNV 264


>gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10]
 gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens
           MLS10]
          Length = 251

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 21/249 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +KK+ +  +K R  S     F+ G H +  A+ + +  I +L+  +N      W+   P 
Sbjct: 15  WKKLHT--KKGRDKSGL--FFIEGDHLIEEAIRS-AITIKELILEENQSLPEAWED--PE 67

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             PV  V    ++++   E   QG A   E  PL++  LD  R     + +D V DP N+
Sbjct: 68  -VPVVWVTQPVLNELCETET-PQGFAAVCEKPPLVNLPLDDGR----FLFIDGVQDPGNL 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA++R+A A    G++         +  + +S  G+L HIP  ++ +L +A++       
Sbjct: 122 GAMIRTAEAAGITGVVIGDGTVDVYNGKVIRSTQGSLFHIPVQKM-DLEEAVEICKEANV 180

Query: 208 QTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              G  L   +   LE +   D  ALI+G EG G+R +  E      ++ + G  ++LNV
Sbjct: 181 PVFGTSLQGSTFNALEPQ---DTFALIMGNEGSGVRARLLEMTDQNLYIPIYGKAESLNV 237

Query: 266 SNAAAVALY 274
           + A  + LY
Sbjct: 238 AVACGIVLY 246


>gi|315498045|ref|YP_004086849.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315416057|gb|ADU12698.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 253

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 110/242 (45%), Gaps = 14/242 (5%)

Query: 37  NQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           + K R  +  + LF+  G   +     +P  +   +L T   L  L    +LP   PV  
Sbjct: 18  DVKDRDLTGRQGLFMAEGKVVLERLFTSPVAETVSVLTTPERLGGL---VSLPDA-PVYV 73

Query: 96  VPPQTIDKIVGKEAVHQG-LAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           VP   ++++ G   +H+G LAL   AP  + +      +  ++ L  + +  N+G ++R+
Sbjct: 74  VPQGVMNQVAGFP-IHRGYLALGRYAPKQALSERVSGTTARVLALYGIANTDNMGGLMRN 132

Query: 154 AVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           A AF  D ++  T    P     +  S  GALE +P+ R  ++   L+ +   G    GL
Sbjct: 133 AAAFGADAVLLDTTCCDPLYRKAIRVSVGGALE-VPHYRTDDMVGTLRGL---GLTPYGL 188

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S      LE+ + + + A++ GAEG GL P     A     + M G   +LNV+  + + 
Sbjct: 189 SPSGAVTLEEVMPDPRSAVLFGAEGPGL-PAELMAACRTVRIDMHGGFDSLNVATTSGIV 247

Query: 273 LY 274
           LY
Sbjct: 248 LY 249


>gi|315032894|gb|EFT44826.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0017]
          Length = 258

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|256617041|ref|ZP_05473887.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
 gi|307277164|ref|ZP_07558268.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2134]
 gi|256596568|gb|EEU15744.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
 gi|295113457|emb|CBL32094.1| rRNA methylases [Enterococcus sp. 7L76]
 gi|306506094|gb|EFM75260.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2134]
          Length = 258

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
           JGS1721]
 gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
           JGS1721]
          Length = 257

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 1/146 (0%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +++ +L++++D V DP N+G I+R+A A    GI+ TK      +    +S  G++ +IP
Sbjct: 105 LKSGELVVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   +L D ++ +   G++ +  S   K    +E    K+ + +G EG G+  +  + A
Sbjct: 165 IVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIA 223

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + MPG  ++LNV+ A ++ +Y
Sbjct: 224 DIKVKIPMPGEAESLNVAVATSIMIY 249


>gi|156365597|ref|XP_001626731.1| predicted protein [Nematostella vectensis]
 gi|156213618|gb|EDO34631.1| predicted protein [Nematostella vectensis]
          Length = 301

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 126/271 (46%), Gaps = 43/271 (15%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALA 79
           L R+H    + ++ + +   TS     F++G+     AL++  RK+F++   +   N   
Sbjct: 38  LTRHHSGSTRYETKSTRKSGTSSRRE-FIFGIGPCVLALSSGRRKVFKIYMNEEANNTTR 96

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            L W       FPV ++    + +++  + ++   +L                 L++ LD
Sbjct: 97  ILLWK------FPV-SIFVILMKRMMSYKGINHIASLHP---------------LVLALD 134

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N GAI+R++     D I+  K+ S   S V++K+++GA+E     +  +L   L
Sbjct: 135 EIQDPMNFGAIIRTSWLLGVDKIVVPKQNSAPLSPVVSKASAGAMEVFNVYQTPDLPKFL 194

Query: 200 QKMHSWGFQTIG----LSSDS-KKPL---EQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           Q+  + G+  +G    ++ DS  +P+   E  +    + L+LG EG+GLR   Q+  T +
Sbjct: 195 QERAAIGWDVLGAVQPITDDSHHRPVNCAEYSLSKPTV-LVLGNEGRGLRNTVQQQCTQL 253

Query: 252 AHLH-------MPGI-IKALNVSNAAAVALY 274
             ++          I + + NVS AA + ++
Sbjct: 254 LSIYPHQAQNSFQSIDLDSFNVSVAAGILVF 284


>gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
 gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
          Length = 267

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R + L++VLD + DP N+G I+R A A    G+I  +  +   +    +S  G+L H+P
Sbjct: 110 MRENGLVIVLDGLQDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTMGSLFHLP 169

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L   L +    G + +    + K+   +        +++G+EG+G+ P+     
Sbjct: 170 VLE-GELLSILPEARERGARLVTTMLEGKRSCFEYDFRGTSWIVIGSEGRGVSPEVAAIV 228

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
                + MPG  ++LN + AA+V +Y  + Q H+A
Sbjct: 229 DDAIRIPMPGQAESLNAAMAASVLMYEALRQRHYA 263


>gi|291563020|emb|CBL41836.1| rRNA methylases [butyrate-producing bacterium SS3/4]
          Length = 280

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 16/157 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + VL++V +P NIGAI RSA A   D ++ T   S       A+ + G +  IP+     
Sbjct: 123 IAVLENVMNPTNIGAIFRSAAALGMDAVLLTSGCSDPLYRRAARVSMGTVFQIPWTFFPK 182

Query: 195 LTD----ALQKMHSWGFQTIGL-------SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             D     L+ + S GFQT  +       S D  K L  E    K+A+ILG EG GL   
Sbjct: 183 NADLSCGGLEALRSLGFQTAAMALKEDSVSIDDPKLLAAE----KLAVILGTEGDGLASA 238

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           T         + M   + +LNV+ A+AVA + +T+N 
Sbjct: 239 TIGGCDHTVMIPMAHGVDSLNVAAASAVAFWELTKNR 275


>gi|288549949|ref|ZP_06390860.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317311|gb|EFC56249.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 199

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+GA++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 52  CVLALEDVGNPHNLGAMMRSCAHFGVKGVLL-QDAALLESGAAIRTAEGGAEHVQPITGD 110

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ DA+++    G+  +  SS +  PL +     K+ L+LG E  GL      +A     
Sbjct: 111 SVLDAIEQFRKAGYSIVTTSSHAATPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVS 170

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           +   G +++LNVS A  V L
Sbjct: 171 IDGTGNVESLNVSVATGVLL 190


>gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
 gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
 gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
 gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
          Length = 265

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 117/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
 gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
          Length = 264

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALE 185
           RN+ L++VLD V DP N+G I+RSA A   D ++  K     Y+P       +S  G+L 
Sbjct: 112 RNNSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGKGSVDLYNPKT----VRSTMGSLF 167

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+P I  ++L + L +  S G + +G S  +              L++G E +GL    +
Sbjct: 168 HLPIIE-ADLAELLPEAQSKGIKLVGTSLQATHTCYTYDWTAGTWLLMGNESEGLSDAVR 226

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   + M G  ++LNV+ AA V LY
Sbjct: 227 LAVDESVIIPMQGEAESLNVAMAATVLLY 255


>gi|153873345|ref|ZP_02001957.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
 gi|152070192|gb|EDN68046.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
          Length = 141

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 64/124 (51%)

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A       II  K  +   ++++   A GA +++P I ++NL   L+ +   G   +
Sbjct: 1   MRTADVAGIQAIIVPKNNAVKLTSIVHAVACGAADNVPLIEVTNLARTLRWLQEQGVWIV 60

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   +S++ L +      +A + G+EG GLR  T+ET   +  +   G IK+LNVS A  
Sbjct: 61  GTDENSQESLFETNLTGPLAFVFGSEGTGLRRLTKETCDILVRIPSLGKIKSLNVSVATG 120

Query: 271 VALY 274
           + LY
Sbjct: 121 ICLY 124


>gi|226306779|ref|YP_002766739.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226185896|dbj|BAH34000.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 276

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + ++LL V   VN+P N G ++R A A   D  I         +  + +S++G+L H+P 
Sbjct: 117 QETRLLAVPVEVNEPGNAGTVIRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPV 176

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQET 247
           +R  +    ++++ + G Q +  ++D +  L++  E+ +   A + G E  GL P     
Sbjct: 177 VRDRDTVSVIEQIRAAGIQILATAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQ 236

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + + G  ++LN++ AAA+ LY
Sbjct: 237 ADHRVRIPIHGRAESLNLATAAAICLY 263


>gi|183598085|ref|ZP_02959578.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
 gi|188020242|gb|EDU58282.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
          Length = 347

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 10/169 (5%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+++ET    +P  D V      + L+ V +PHN+G I+RS   F   G+I  +     E
Sbjct: 183 GMSVETYLQQAPATDCV------LALEDVGNPHNLGGIMRSCAHFGVQGVI-LQDAGVVE 235

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIAL 231
           S    ++A G  EHI  I    L++ L +    G+  +  SS    + + +     K+ L
Sbjct: 236 SGAAIRTAEGGAEHIKAIDADGLSNTLSQFRQAGYTIVTTSSHKGSQDISKAKLPAKMVL 295

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +LG E  GL            ++   G +++LNVS A  + L  +  QN
Sbjct: 296 VLGQERDGLSDSVWNEGDMSLYIGGTGKVESLNVSVATGIMLAQWWQQN 344


>gi|152993149|ref|YP_001358870.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425010|dbj|BAF72513.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 258

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 11/197 (5%)

Query: 82  DWDANLPHPFPVKTVPPQTI-DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           D+ AN  +  PV  V P+T+ ++IVG    H  +     P  S TLDA+ N   +++LD 
Sbjct: 64  DFLAN--YTIPVAYVAPKTVLEQIVGHRLHHNVMMHGVRPKES-TLDALGNH--IIMLDE 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRISNLTDAL 199
           +++  NIG+I RSA A    G +   R  P   A  A   S G +  + + R  N+ + +
Sbjct: 119 ISNTDNIGSIARSAAALDV-GSLLLPRQGPHPYARRALRVSMGHIGKLKFHRYDNIKETI 177

Query: 200 QKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           QK+   G++     ++ DS  PL Q     K AL++G E  G+  +       +  + M 
Sbjct: 178 QKLKKMGYRIFAAEVTKDS-TPLSQVRVPGKWALLMGHEQLGISDEILALCDEVVTIEME 236

Query: 258 GIIKALNVSNAAAVALY 274
             IK+ NV+ AA++ +Y
Sbjct: 237 EGIKSFNVAVAASIMMY 253


>gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
 gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
          Length = 254

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 117/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +        ++LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKVLRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|240949299|ref|ZP_04753642.1| predicted rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240296250|gb|EER46899.1| predicted rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 332

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 11/198 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101
           ++ E + +YG ++  A        I +L AT     +L D  + L  H      V  + +
Sbjct: 91  NRAEEMKVYGENSCLAVFQQRPESIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVSREEM 150

Query: 102 DKIVGKEAVHQG---LALETAPLLS--PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +K+ G E  H G   L ++ AP+ S    L   R    L++LD+VN+  N+G I+R+   
Sbjct: 151 EKVTGTE--HHGDVCLLIKKAPVFSLEGYLQIARARDCLVLLDNVNNAQNVGGIIRTCAF 208

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           +   GIIT      + SA  A+ A G LE +  +   +   ALQ++ + G+Q I L+   
Sbjct: 209 YGVKGIITESNDRLNSSAA-ARVAEGGLEFVHALETKHKQIALQQLRNAGYQIIHLTRQK 267

Query: 217 KKPLEQEIK-NDKIALIL 233
           + P   +I   +K+  +L
Sbjct: 268 QAPTLTKIALAEKVVFVL 285


>gi|313679270|ref|YP_004057009.1| tRNA guanosine-2'-o-methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313151985|gb|ADR35836.1| tRNA guanosine-2'-O-methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 214

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 5/150 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +++++V+ PHN+ AILR+A A    G+      +P+         SG  E   Y
Sbjct: 16  RQPDLTVLMENVHKPHNLSAILRTADAV---GVYEAHAVNPTGGVPTFHDTSGGSEKWVY 72

Query: 190 IRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
           +R+  N+  AL+ +   GF     +   +    +E+   +  A++LGAE  G+ P+  E 
Sbjct: 73  LRVHPNVEAALEHLKGRGFTVYAANLSERAVDYREVDYTRPSAVLLGAEKWGVSPRAAEL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A +   + M G++++LNVS AAAV L+  Q
Sbjct: 133 ADADVIIPMMGMVQSLNVSVAAAVILFEAQ 162


>gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 276

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 10/196 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           PV  V  + + ++ G + +H+GL  A + AP  S   + V  +  L +L+ V D  NIG+
Sbjct: 81  PVYEVTREVLAEVAGFD-MHRGLVAAADRAPEYS-VGEVVDGASTLCILEGVGDHENIGS 138

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSW 205
           I R+A     DG++     +      + + + G +  +PY     + +N    L  +   
Sbjct: 139 IFRNAAGLGIDGVLFGAGCADPLYRRVVRVSMGHVLRLPYAHMEGKTTNWQHGLAYLQEK 198

Query: 206 GFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           GFQ I L+ + +    Q++ +   K A+++GAEG GL           A + M     +L
Sbjct: 199 GFQIIALTPNPEAANLQDVIDPTKKTAILVGAEGPGLTEHAMRATDVRARIPMQPGTDSL 258

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+  Y    H
Sbjct: 259 NVATAAAIGFYEALRH 274


>gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           metalliredigens QYMF]
          Length = 272

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 75/145 (51%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +  ++VLD + DP N+G I+R+A     D II TK      ++   ++  GA+ H+P 
Sbjct: 118 KENPFIVVLDEIQDPGNLGTIIRTAEGAKTDAIILTKGCVDPYNSKSIRATMGAIFHLPI 177

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I+ +N  + +  + +   + +  + ++ K   Q   N+ IA+I+G E +G+ P       
Sbjct: 178 IQSNNNEEWIYYLKANAVKLVASTLETDKNHFQLDYNNPIAMIIGNEARGIHPDILAQVD 237

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G I++LN S AA + +Y
Sbjct: 238 ERVKIPILGKIESLNASVAAGILIY 262


>gi|291008734|ref|ZP_06566707.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 253

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD +  P N+G ILR+A A   DGI+   R   S   ++ K+++G   H P +R   
Sbjct: 106 VLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVIKASAGVAFHAPVLRAQT 165

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              A + +   G+    L + +++ + +     +   +LG+E  GL    Q        +
Sbjct: 166 AGHAAELLTEAGYPLYALEAGAQESIYEADFGSRAVFVLGSETAGLSEDVQTRIAQSVAI 225

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LNV++AAAV  +
Sbjct: 226 PMRGGVESLNVASAAAVLCF 245


>gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 251

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 75/143 (52%), Gaps = 4/143 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S  +++LD + DP NIG I+R+A +FS + I  +K  +   S  + ++  G++  + +++
Sbjct: 109 SDKILILDRIQDPGNIGTIIRTAESFSINTIFYSKGTADVFSPKVVRATMGSIYFVNFVK 168

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           +    D + K+ S G++      ++    +    ++K+ALILG E  G+       +   
Sbjct: 169 L----DDISKLKSEGYKIYASCLENAISSKSAFTDEKMALILGNESVGISEDLINQSDKK 224

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M G  ++LNV+ A A+ +Y
Sbjct: 225 IKIDMTGNAQSLNVATAGAILIY 247


>gi|302653550|ref|XP_003018599.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
           0517]
 gi|291182256|gb|EFE37954.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
           0517]
          Length = 573

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 127/318 (39%), Gaps = 97/318 (30%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84
           S P + F+YG   V+AA+    RK+  L     ++++      W+               
Sbjct: 231 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 290

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135
           A + H   P KT    T+DK+ GK   H G+ LE +PL  P      T+ +  NS  L  
Sbjct: 291 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQ 345

Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160
                                              ++LD + DP N+GAI RSA  F  D
Sbjct: 346 LAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 405

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKMHSWGF-------QTIG 211
            I  + + S   S V+ K+A+GA E IP + + +++  +   + + W F        T+ 
Sbjct: 406 AIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLV 465

Query: 212 LSSDSKKPL-------EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259
                K P+         E+      L+LG EG GL+ K +  A S   + +PG      
Sbjct: 466 NDYTRKIPVMNSLSSLSSELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSDNI 523

Query: 260 ------IKALNVSNAAAV 271
                 + +LNVS A+A+
Sbjct: 524 RDDTAGVSSLNVSVASAL 541


>gi|256956680|ref|ZP_05560851.1| rRNA methylase [Enterococcus faecalis DS5]
 gi|300860699|ref|ZP_07106786.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
           Ef11]
 gi|256947176|gb|EEU63808.1| rRNA methylase [Enterococcus faecalis DS5]
 gi|300849738|gb|EFK77488.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
           Ef11]
 gi|315035621|gb|EFT47553.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0027]
          Length = 258

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 4/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M G  ++LNV+ AA V ++  +N
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFEN 256


>gi|298346938|ref|YP_003719625.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389351|ref|ZP_07371316.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656609|ref|ZP_07909496.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236999|gb|ADI68131.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327469|gb|EFL94702.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492564|gb|EFU82168.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 283

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 12/199 (6%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P PV       ++++VG   +H+G   A+   P  +P  + ++++  +++L+ + D  N+
Sbjct: 86  PIPVFVASEDLLERLVGFH-LHRGAIAAMLRKPAPNPR-EILKHASRVLILEDLVDHTNV 143

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA +RSA A   D I+ T   +        + + G +  +P+ R+    D     H  GF
Sbjct: 144 GAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDP-ALFHEAGF 202

Query: 208 Q--TIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   + L  DS+   +  ++     + K+ALI GAE  GL+P+T   A  +  + M   +
Sbjct: 203 ELAALALREDSQDLRDYAMELGAAPSRKVALIAGAERDGLKPQTIARADKVVRIAMAHGV 262

Query: 261 KALNVSNAAAVALYITQNH 279
            +LNV+ A A+A + T  +
Sbjct: 263 DSLNVAGAIAIACWATATN 281


>gi|212712922|ref|ZP_03321050.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
           30120]
 gi|212684400|gb|EEB43928.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
           30120]
          Length = 370

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L+   ++  ++ L+ V +PHN+G I+RS   F   G+I  +     ES    ++A G  E
Sbjct: 213 LENAVDTDCVLALEDVGNPHNLGGIMRSCAHFGVKGVI-LQDAGMLESGAAIRTAEGGAE 271

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLR 241
           HI  I     T  L K    G+  +  SS       Q+I       K+ L+LG E  GL 
Sbjct: 272 HIKAIDADGFTTTLDKFRQAGYTIVTTSSHKGS---QDIAKVQLPKKMVLVLGQESDGLS 328

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
             T +      ++   G +++LNVS A  + L  + +QN
Sbjct: 329 DSTWDQGDMSLYIGGTGKVESLNVSVATGIMLSQWWSQN 367


>gi|33866165|ref|NP_897724.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
 gi|33639140|emb|CAE08146.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
          Length = 278

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 16/166 (9%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A +++  L+VLD + DP N+G +LR+A+A     +       P  S  L ++++GAL  +
Sbjct: 104 APKDAHFLLVLDRIQDPGNLGTLLRTALAADVQNVWLGSGVDPLGSKSL-RASAGALLQL 162

Query: 188 PYIR--------ISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKI--ALIL 233
           P+ R        IS LTD L+++ + G Q +      S    +P+     N ++  AL+L
Sbjct: 163 PHHRFGPDEDTAISQLTDELKRLAAGGMQVVATLVPGSQVPIRPVPYWELNWRLPTALVL 222

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G EG GL P+     T    L     +++LNV+ AAAV L + +  
Sbjct: 223 GTEGAGLHPELLACCTHAVTLPHSSRVESLNVA-AAAVPLLLERRR 267


>gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
           15579]
 gi|187775605|gb|EDU39407.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
           15579]
          Length = 259

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 6/239 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ ++ +Q ++  + G      AL  N+   K+F    + N L +L    N+ +      
Sbjct: 17  REKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEKLYKKYNINNDIETYV 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    +  I   E   QG+        +  LD    +   +++D V DP N+G I+R+A 
Sbjct: 77  VNYSVLKSISNTEN-PQGIVSVINYFKTEKLDL--ENGFYILVDKVQDPGNMGTIIRTAH 133

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GIITTK      +    +S  G++ +IP I   NL + ++ +   GF+ +  S D
Sbjct: 134 AAGALGIITTKGTVDVYNEKTLRSTMGSIFYIPIIEDENL-ETVKSLQRNGFKLLVSSLD 192

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          D + + +G EG G+       +     + MPG  ++LNV+ A ++  +
Sbjct: 193 TNSNFYDVNMKDNMIIAVGNEGNGISEDLNSLSDIKVKIPMPGAAESLNVAVACSIMTF 251


>gi|255975196|ref|ZP_05425782.1| rRNA methylase [Enterococcus faecalis T2]
 gi|307285815|ref|ZP_07565949.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0860]
 gi|255968068|gb|EET98690.1| rRNA methylase [Enterococcus faecalis T2]
 gi|306502576|gb|EFM71843.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0860]
          Length = 258

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-ENYALILGNEGSGVLPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|209558854|ref|YP_002285326.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
 gi|209540055|gb|ACI60631.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
          Length = 245

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           +VL+ V DP N+G I+R+A A   DG+  +++ +   +    +S  G+  H+P  R  + 
Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTNVY 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251
            L   LQ+  +     I  ++ SKK ++ +    ++++AL+LG EG+G+  +    A  +
Sbjct: 164 QLCRELQEHKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|325678815|ref|ZP_08158413.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
 gi|324109319|gb|EGC03537.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
          Length = 266

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 23/198 (11%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           PV T   + + KI G + + QG+       A++  P          N++ + VL+ + + 
Sbjct: 75  PVYTADREQLTKITGFK-LTQGVLCAMKRRAMQAFP---------ENARRIAVLEDIMNQ 124

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKM 202
            NIGA+ RSA A   DGI+ T   S        + + G +  I + R +  +D+  ++K+
Sbjct: 125 TNIGAVFRSAAAMGIDGILLTDGCSDPLFRRTIRVSMGTVFQIAW-RYAGTSDSGYIEKL 183

Query: 203 HSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            + G+ T  + L  D+    ++ +KN +K+A++LG EG GLR  T         + M   
Sbjct: 184 KADGWLTAAMALRDDTVSIADERLKNAEKLAIVLGTEGDGLREDTISACDLTVKIPMAHG 243

Query: 260 IKALNVSNAAAVALYITQ 277
           + +LNV+ A AVA + T+
Sbjct: 244 VDSLNVAAAGAVAFWETR 261


>gi|319786089|ref|YP_004145564.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464601|gb|ADV26333.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
           11-1]
          Length = 301

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 24/242 (9%)

Query: 47  ENLFLYGVHTVSAALNN-PS--RKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTID 102
           E + LYG++ V A     P   RK++ L A  +AL   L W   + +    + V  + +D
Sbjct: 61  EEVRLYGLNAVQAVFERRPQAIRKLYLLQARVHALRPLLAW--CVQNRVGYRVVENEDLD 118

Query: 103 KIVGKEAVHQGLA---LETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           ++    + H+G+    L + PL        L+P   A     L + LD V +PHN GAIL
Sbjct: 119 RLA-ASSHHEGVVADVLRSDPLPLEDWLASLAPGAPA-----LALWLDGVGNPHNFGAIL 172

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    ++  +R + + S   A+ A G  E +  +R+     AL ++H+ GF +  
Sbjct: 173 RSAAHFGA-AVLLPERSTLALSGAAARVAEGGAEGVALVRLPGNDAALARLHAAGFASAA 231

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                 + L       ++  ++GAEG+G+             +   G +++LNV+ A AV
Sbjct: 232 TVVRDGEDLFAMQPQPRLVYVMGAEGEGMDAGLAGACQHRVSIAGTGAVESLNVAAATAV 291

Query: 272 AL 273
            L
Sbjct: 292 FL 293


>gi|46445775|ref|YP_007140.1| hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399416|emb|CAF22865.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 249

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 8/160 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASG 182
           P   +++ +Q ++VLD +NDP N+G ++R+A+AF  +GI +      P    VL +SA G
Sbjct: 95  PPFSSLKQAQNILVLDGINDPGNLGTLMRTALAFGWNGIYLLPTSCDPYNEKVL-RSARG 153

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLR 241
           A   IP +R  N+ +         FQT  L +D K + L+  +   +  LI+G E  G  
Sbjct: 154 AHFKIP-LRRGNINELELLAKQGNFQT--LVADLKGQILKSTVSKKRKILIMGNEAHGPS 210

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
           P+  + A  +  + M G +++LNV+ A  + LY + Q +F
Sbjct: 211 PEVFKFAEPIC-IPMSGEMESLNVAVAGGILLYALNQMNF 249


>gi|160894110|ref|ZP_02074888.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
 gi|156864143|gb|EDO57574.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
          Length = 287

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 10/213 (4%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129
            LA K  LA  +   +     P+   P + + K+ G   + +GL         PT++ V 
Sbjct: 68  FLAEKGQLAEAEEILDRMEDVPIYVAPDEILTKLTGYH-LTRGLWCTMRRRTLPTIEEVC 126

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + ++ + +L+ V +P N+GA+ R A A   D +I T   S       ++ + G +  IP+
Sbjct: 127 QGAKRIAILEEVVNPTNVGALFRCAAALGMDAVILTGGCSDPLYRRASRVSMGTVFQIPW 186

Query: 190 IRISNL-----TDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLR 241
             +S         A++ +   GF+T  + L  DS    + ++ + +K+A++LG EG GL 
Sbjct: 187 TMLSKKDGVWPEQAMKTLKEMGFKTAAMALREDSVGIDDPQLNSEEKLAIVLGTEGDGLA 246

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             T         + M   + +LNV+ A AVA +
Sbjct: 247 GDTIADCDYTVMIPMAHGVDSLNVAAAGAVAFW 279


>gi|56808573|ref|ZP_00366304.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
          Length = 245

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           +VL+ V DP N+G I+R+A A   DG+  +++ +   +    +S  G+  H+P  R  + 
Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTNVY 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251
            L   LQ+  +     I  ++ SKK ++ +    ++++AL+LG EG+G+  +    A  +
Sbjct: 164 QLCRELQEHKT----PILATTLSKKSVDYKSLTHHERLALVLGNEGQGISAEMAALADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|258645251|ref|ZP_05732720.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
 gi|260402601|gb|EEW96148.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
          Length = 269

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD V DP N+GAI+R+A A  C G++ TK  +   S  + +S+ G++  +P     ++
Sbjct: 121 VLLDTVQDPGNVGAIIRTAAAAGCSGVLLTKGSADPYSEKVVRSSMGSILRLPIYHDLDI 180

Query: 196 TDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            + L+++ S+     IG S  + +         +   I G EG G+ P+  +       +
Sbjct: 181 -EFLKEIKSFSKVPFIGTSLSASQNYRHAKFVTEGVFIFGNEGSGISPEILDLTDWNVFI 239

Query: 255 HMPGIIKALNVSNAAAVAL--YITQNHF 280
            M G +++LNVS+ AA+ L  Y+  N F
Sbjct: 240 PMAGTVESLNVSSTAAIILFYYLDDNEF 267


>gi|53712583|ref|YP_098575.1| putative rRNA methylase [Bacteroides fragilis YCH46]
 gi|52215448|dbj|BAD48041.1| putative rRNA methylase [Bacteroides fragilis YCH46]
          Length = 270

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P L    +  R ++ ++V+D V D  NIGAI RSA A   D ++ T+      +    + 
Sbjct: 107 PELRSVEEVCREAKRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAE 236
           + G++  + +  I     +L ++   GF+T  + L+ DS    +  +K + K+A+I+G E
Sbjct: 167 SMGSIFLVSWTWIDG---SLSRLGDLGFRTAAMALTDDSISIDDPVLKTEPKLAIIMGTE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G GL  +T   A  +  + M   + +LNV+ AA+VA +
Sbjct: 224 GDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFW 261


>gi|125718589|ref|YP_001035722.1| SpoU rRNA methylase family protein [Streptococcus sanguinis SK36]
 gi|125498506|gb|ABN45172.1| SpoU rRNA Methylase family protein, putative [Streptococcus
           sanguinis SK36]
 gi|324995033|gb|EGC26946.1| SpoU rRNA methylase [Streptococcus sanguinis SK678]
          Length = 246

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D ++   S     +   LSS S    E + K D  AL++G EG+G+ P+  E A  + H
Sbjct: 164 ADFIRLAQSSSLPILASTLSSTSIDYREVDSK-DSFALVMGNEGQGISPEMTEAADVLVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243


>gi|60680796|ref|YP_210940.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
 gi|265762723|ref|ZP_06091291.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60492230|emb|CAH06995.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
 gi|263255331|gb|EEZ26677.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162293|emb|CBW21838.1| putative SpoU-like rRNA methylase [Bacteroides fragilis 638R]
          Length = 270

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P L    +  R ++ ++V+D V D  NIGAI RSA A   D ++ T+      +    + 
Sbjct: 107 PELRSVEEVCREAKRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRV 166

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAE 236
           + G++  + +  I     +L ++   GF+T  + L+ DS    +  +K + K+A+I+G E
Sbjct: 167 SMGSIFLVSWTWIDG---SLSRLGDLGFRTAAMALTDDSISIDDPVLKTEPKLAIIMGTE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G GL  +T   A  +  + M   + +LNV+ AA+VA +
Sbjct: 224 GDGLPYETISEADYVVRIPMSHSVDSLNVAAAASVAFW 261


>gi|289704605|ref|ZP_06501036.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
 gi|289558669|gb|EFD51929.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
          Length = 280

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 16/198 (8%)

Query: 89  HP-FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           HP  PV T P   ++ + G   +H+G LA    P   P  D +  ++ +++ + + D  N
Sbjct: 82  HPDVPVFTGPDDVLEALTGFH-LHRGALAAMDRPAPRPLADVLAGARRVLIAEDLVDHTN 140

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSW 205
           +GA++RSAVA   D ++ T + +        + + G +  +P+ R+   +  +L  + + 
Sbjct: 141 LGAVVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAASLPALRAA 200

Query: 206 GF---------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           GF         + +GL S   +PL      +++AL+LG EG G+RP+T     +   + M
Sbjct: 201 GFAVAALEVTERAVGLDSARIEPLR---TAERLALVLGQEGPGVRPETLAQTDADVVIPM 257

Query: 257 PGIIKALNVSNAAAVALY 274
           P  + +LNV+ AAAVAL+
Sbjct: 258 PDGVDSLNVAAAAAVALW 275


>gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 265

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|298209194|ref|YP_003717373.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849121|gb|EAP86990.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
           HTCC2559]
          Length = 171

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD +  P N+G+I R A AF    I+  +      S+   ++A      +P  RI 
Sbjct: 18  IVLVLDQLTSPANLGSIFRLADAFGITKIVQYRCDIDMNSSRFKRTARTTNTTVPSERID 77

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
           +++  +  + S G+ TI L  +DS KP++       +K+ LI+G+E KG+  +  +    
Sbjct: 78  DISSYITSLKSDGYTTIALEITDSSKPIDAIPLSSENKLILIIGSERKGVSEQLLKHCDF 137

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
             H+ M G   ++NV+ A  +AL+
Sbjct: 138 ATHITMFGKNSSMNVAQATGIALF 161


>gi|226355931|ref|YP_002785671.1| rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase)
           [Deinococcus deserti VCD115]
 gi|226317921|gb|ACO45917.1| putative rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA
           methylase) [Deinococcus deserti VCD115]
          Length = 270

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +K+ G+E    GL L  A L +P L    N  +L+VL  +  P N+GAILRSA A    
Sbjct: 84  FEKVSGREN-PDGL-LGVADLPAPRLPEPGNDAVLVVLHGLEKPGNVGAILRSADAAGAQ 141

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++   R +      + +S+ G++  +P   +   T AL+ + + GF T+  + D+ +  
Sbjct: 142 GVLVLGRGADPYGPNVIRSSQGSVFTMPVAVLDEGT-ALEWLSTRGFTTVACTPDAPRTY 200

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274
                  ++AL+LG E  GL    + T  S++  +H      +LNV+ AAA+ L+
Sbjct: 201 WDAPLTGRVALLLGTEHAGLPESWRHTDHSVSIPMHEGSGADSLNVATAAALVLF 255


>gi|116072328|ref|ZP_01469595.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
 gi|116064850|gb|EAU70609.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
          Length = 279

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     +VLD + DP N+G++LRSA+A     +       P     L ++++GAL  +P+
Sbjct: 110 KTCDFWLVLDRIQDPGNLGSLLRSALAADVQSVWMGSGVDPLGGKAL-RASAGALLQLPH 168

Query: 190 IR--------ISNLTDALQKMHSWGFQTIG-LSSDSKKPLE----QEIK-NDKIALILGA 235
            R        I +L  AL+ + + G Q +  L  D+  PL      E+      AL+LG 
Sbjct: 169 RRFGPEQQQAIDDLDQALRLLMAQGIQVVATLVPDASGPLRPIPYWELDWTQPTALVLGT 228

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           EG GL P+ Q   T    L     +++LNV+ AAAV L + +  
Sbjct: 229 EGAGLHPRLQACCTHAVTLPHSSRVESLNVA-AAAVPLLLERRR 271


>gi|302504246|ref|XP_003014082.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS
           112371]
 gi|291177649|gb|EFE33442.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS
           112371]
          Length = 573

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 127/318 (39%), Gaps = 97/318 (30%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWD--------------- 84
           S P + F+YG   V+AA+    RK+  L     ++++      W+               
Sbjct: 231 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 290

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL-- 135
           A + H   P KT    T+DK+ GK   H G+ LE +PL  P      T+ +  NS  L  
Sbjct: 291 AQVKHVTGPWKT----TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQ 345

Query: 136 -----------------------------------MVLDHVNDPHNIGAILRSAVAFSCD 160
                                              ++LD + DP N+GAI RSA  F  D
Sbjct: 346 LAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGAD 405

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKMHSWGF-------QTIG 211
            I  + + S   S V+ K+A+GA E IP + + +++  +   + + W F        T+ 
Sbjct: 406 AIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLV 465

Query: 212 LSSDSKKPL-------EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----- 259
                K P+         E+      L+LG EG GL+ K +  A S   + +PG      
Sbjct: 466 NDYTRKIPVVNSLSSLSSELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSDNI 523

Query: 260 ------IKALNVSNAAAV 271
                 + +LNVS A+A+
Sbjct: 524 RDDTAGVSSLNVSVASAL 541


>gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
 gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
          Length = 248

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  + ++VLD V DP N+G ++R+A A   D ++  K      +A + ++  G+L H+  
Sbjct: 100 RKMKKVLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVRATQGSLFHVNV 159

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             + +L + L ++   GF   G +       EQ    +K+AL++G E +G+         
Sbjct: 160 TSV-DLLEKLPELKEDGFHVYGTALSKATSYEQVAFEEKVALVIGNEAQGVHADVLALCD 218

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +  H+ + G +++LN + AA + +Y
Sbjct: 219 TRVHIPVLGDVESLNAAVAAGILMY 243


>gi|134102874|ref|YP_001108535.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915497|emb|CAM05610.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 234

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD +  P N+G ILR+A A   DGI+   R   S   ++ K+++G   H P +R   
Sbjct: 87  VLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGVASLDPLVIKASAGVAFHAPVLRAQT 146

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              A + +   G+    L + +++ + +     +   +LG+E  GL    Q        +
Sbjct: 147 AGHAAELLTEAGYPLYALEAGAQESIYEADFGSRAVFVLGSETAGLSEDVQTRIAQSVAI 206

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LNV++AAAV  +
Sbjct: 207 PMRGGVESLNVASAAAVLCF 226


>gi|296138567|ref|YP_003645810.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296026701|gb|ADG77471.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 266

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 126 LDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           LD  R    +++++VL+ VND  N+G+I R+  A   D ++   R S        + + G
Sbjct: 105 LDPARLLDEARIVVVLEGVNDHENLGSIFRNCAALGADAVLFGPRCSDPLYRRAVRVSMG 164

Query: 183 ALEHIPYIRISNLT---DALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEG 237
            +  +P+  +       D L  +   GF+T+ L+   +  + Q +  + +++AL++GAEG
Sbjct: 165 HVLLVPFAHLPAAGWPGDGLALLAERGFRTVALTPSGESTVAQALAGRPERVALVVGAEG 224

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL  +    A   A + M     +LNV+ A AVALY
Sbjct: 225 PGLSAEMLAAADVRAAIPMHRGTDSLNVATATAVALY 261


>gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 265

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVIRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGGFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|288934040|ref|YP_003438099.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
 gi|288888769|gb|ADC57087.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
          Length = 361

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+GAI+RS   F   G++  +     ES    ++A G  EH+  I   
Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGD 272

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  D L +    G+  +  SS +  PL +     K+ L+LG E  GL      ++     
Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVA 332

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359


>gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
           Eklund 17B]
          Length = 260

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 2/150 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +  D V DP N+G I+R+A A   +GII +K      +    +S  G+L ++P   
Sbjct: 110 GDFYLFCDKVQDPGNLGTIIRTAHAAGVNGIILSKGTVDIYNEKTIRSTMGSLFYMPIYY 169

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             N    ++ +   GF+ I  S +S K   +E    K  L +G EG G+  +  + A   
Sbjct: 170 DDNEFSLIKSLKKDGFKLIVTSLESSKDFFKEDLKGKTILTVGNEGNGVSNEVLDLADRR 229

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNH 279
             + MPG  ++LNV+ A ++ +Y  I QN 
Sbjct: 230 VKIPMPGGAESLNVAIATSIIIYEKIRQNF 259


>gi|313890877|ref|ZP_07824501.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120775|gb|EFR43890.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 255

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 3/152 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P L ++   + L+ L+ V DP N+G ++R+A A   DG++ +++ +   +    +S  G+
Sbjct: 103 PDLPSIGKGKYLL-LEDVQDPGNLGTMIRTADAAGFDGVLLSEKSADVFNQKTLRSMQGS 161

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             HIP  R +++    + M +     +  + SD     +Q        L++G EG+G+ P
Sbjct: 162 HYHIPVWR-TDVYAFCRTMKTKEMPILATTLSDQSIDYKQVGTLTDFILVMGNEGQGISP 220

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K  E ++ + H+ MPG  ++LNV+ AA + ++
Sbjct: 221 KMAELSSQLVHISMPGQAESLNVAVAAGILIF 252


>gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
           YK9]
 gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
           YK9]
          Length = 264

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALE 185
           R   L++VLD V DP N+G I+RSA A   D ++        Y+P       +S  G+L 
Sbjct: 114 REQSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGRGCVDLYNPKT----VRSTMGSLF 169

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+P I  ++L + L K    G +    S  S              L++G+E  GL P+  
Sbjct: 170 HLPVIE-ADLLELLPKAQERGIRLAATSLQSAVSCYDCDWTSATWLLMGSESDGLSPEVL 228

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A     + + G  ++LNV+ AA V LY
Sbjct: 229 ELADQSVIIPIRGRAESLNVAMAATVILY 257


>gi|290508236|ref|ZP_06547607.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
 gi|289777630|gb|EFD85627.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
          Length = 361

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+GAI+RS   F   G++  +     ES    ++A G  EH+  I   
Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVVV-QDAGVLESGAAIRTAEGGAEHVEPITGD 272

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  D L +    G+  +  SS +  PL +     K+ L+LG E  GL      ++     
Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVA 332

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359


>gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
 gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
          Length = 265

 Score = 66.2 bits (160), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDRNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|254514484|ref|ZP_05126545.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3]
 gi|219676727|gb|EED33092.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3]
          Length = 263

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 113/260 (43%), Gaps = 17/260 (6%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKN---ALARLDWDANLP 88
           M  F +  R   +   L +YG   V  ALN+       L LA+ N    + R   DA   
Sbjct: 1   MSQFRKPDRQERR-RFLTVYGRKAVLEALNDRHMDCRILHLASSNRSGGVLREIQDAADA 59

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRN----------SQLLMV 137
                +    + + +I       QG+AL+   P +    D + +           Q L+ 
Sbjct: 60  RGLDCREHSREELARISRNGRQDQGVALDVYCPAMRELDDYINDINDISGESGKPQRLLA 119

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V +P N+G ++RSA A   DG++   R +P+   ++ K+++G +   P +R ++L  
Sbjct: 120 LDGVTNPQNMGMVIRSAAAAGIDGVLYADRGNPALGPLVIKASAGTVFRAPLLRCASLFK 179

Query: 198 ALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           A Q +   GF+   L +S S+   + +    +   +LG E  G+  +          + M
Sbjct: 180 ASQSLCEQGFRLYRLQASGSRTLFDGQPFAHRALFVLGGESDGISRELSALPGENLSIPM 239

Query: 257 PGIIKALNVSNAAAVALYIT 276
              +++LNV+ + A+  Y+ 
Sbjct: 240 ANGVESLNVAVSGALVAYVA 259


>gi|157144486|ref|YP_001451805.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157081691|gb|ABV11369.1| hypothetical protein CKO_00203 [Citrobacter koseri ATCC BAA-895]
          Length = 348

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 201 CVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 259

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ D L      G+  +  SSD  KPL       K+ L+LG E + L    +E       
Sbjct: 260 SIVDVLDDFRQAGYTIVTTSSDQGKPLFSTALPAKMVLVLGRELESLPEAAREPGDLCVK 319

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G ++ LNVS A  V L  +  QN
Sbjct: 320 IDGTGNVENLNVSVATGVLLGEWWRQN 346


>gi|299148911|ref|ZP_07041973.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
 gi|295087094|emb|CBK68617.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
 gi|298513672|gb|EFI37559.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
          Length = 280

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 85/155 (54%), Gaps = 7/155 (4%)

Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           P+++ V R ++ ++V++ V D  NIGAI RSA A   D I+ T+      +    + + G
Sbjct: 110 PSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMG 169

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKG 239
           ++  IP+  +    + L+K+   GF+T+ ++   K   ++  I     K+A+++G EG G
Sbjct: 170 SVFLIPWTWLDGSPNELRKL---GFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDG 226

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L+ +T   A  +  + M   + +LNV+ A+A+A +
Sbjct: 227 LQNETINEADYVVRIPMANGVDSLNVAAASAIAFW 261


>gi|322387093|ref|ZP_08060704.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
 gi|321142080|gb|EFX37574.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
          Length = 246

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           + L+ V DP N+G I+R+A A    G+I + + +   S    +S  G+  H+P  R  + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFSGVIVSSKSADIYSLKTLRSMQGSHFHLPIYRMPVE 164

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              +  +K H     T  LS +SK   E +   D  AL++G EG+G+ P   + A  + H
Sbjct: 165 TFVEEAKKNHLPILATT-LSQNSKDYRELDRLED-FALVMGNEGQGISPFMTDQADQLVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 ISMKGQAESLNVAIAAGILMF 243


>gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
 gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
          Length = 265

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--TGIVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGVF---AVCEKREKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENDV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTNQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|269977219|ref|ZP_06184192.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|269934522|gb|EEZ91083.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
          Length = 307

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 10/193 (5%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           P PV       ++++VG   +H+G +A    P L      +  S+ ++VL+ + D  N+G
Sbjct: 113 PIPVFVATEAVLEQLVGFH-LHRGAIASMERPALPDPAAILAQSRRVLVLEDLVDHTNVG 171

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A +RSA A + D I+ T   +        + + G +  +P+ R+    DA    H+ GF+
Sbjct: 172 AAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA-DLFHAAGFE 230

Query: 209 --TIGLSSDSK--KPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              + L  D+   +   +++  D   K+AL+ GAE  GL+  T   A  +  + M   + 
Sbjct: 231 LAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVVRIEMAHGVD 290

Query: 262 ALNVSNAAAVALY 274
           +LNV+ A AVA +
Sbjct: 291 SLNVAGACAVACW 303


>gi|223933718|ref|ZP_03625692.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|330833335|ref|YP_004402160.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
 gi|223897599|gb|EEF63986.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|329307558|gb|AEB81974.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
          Length = 246

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 81/155 (52%), Gaps = 7/155 (4%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           LL  TLD        +VL+ V DP N+G ++R+A A   DG+  + + +   +  + +S 
Sbjct: 95  LLPETLDGK-----FLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKG 239
            G+  H+P  R+  ++  L  + S   + +  +  S+    +EI  +   AL++G EG+G
Sbjct: 150 QGSHFHLPVYRMP-ISSILTALKSNQIKILATTLSSQSVDYKEITPHSSFALLMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + A  + H+ MPG  ++LNV+ AA + L+
Sbjct: 209 ISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243


>gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 268

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 75/141 (53%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VL+++ DP N+G +LRS       GII +K  +   +  + +S  G++  +P+I + 
Sbjct: 119 LILVLENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTMGSIFRMPFIYVE 178

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ + L+ + + G  T       +K  ++       A ++G EG GL  +T + A +   
Sbjct: 179 SIPEVLETLKANGIHTYAAHLKGEKNYDEFDYTHPTAFLIGNEGNGLTKETADAADTYIL 238

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G ++++N + ++A+  +
Sbjct: 239 IPMKGEVESMNAATSSAILTF 259


>gi|317177613|dbj|BAJ55402.1| hypothetical protein HPF16_0805 [Helicobacter pylori F16]
          Length = 227

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 18/230 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID------KI 104
           +YG   +   LN+   K+ ++  +K        + +    F +K   P  I       + 
Sbjct: 5   IYGKQVLMRILNSHQEKLQEIYLSK--------EIDKKFFFALKKACPNIIKVDNKKAQS 56

Query: 105 VGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + K   HQG LA    PL  P L  V+  Q L+VL  + D  NIG I RSA     +G+I
Sbjct: 57  LAKGGNHQGVLARVELPLALP-LKEVKKVQKLLVLCGITDVGNIGGIFRSAYCLGMEGVI 115

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                  +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E  
Sbjct: 116 LDFAKELAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVEN- 173

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 174 LSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
 gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
          Length = 265

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++          F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDNKAL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A S  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPFAEVTPAGSFALIVGNEGSGVRQEI--LAKSDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
 gi|213950934|gb|EEB62338.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
          Length = 290

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 16/222 (7%)

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA----VHQGL--ALE 117
           P R +F    T+  LA L            +TVP   +D+ V   A    +H+GL    +
Sbjct: 62  PLRAVF---GTRQKLASLADGLTASEAAIAETVPWFELDREVLAAAAGFDLHRGLLATAD 118

Query: 118 TAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            AP LS  +D V   +  L V++ V D  NIGA+ R+A     DG++     +       
Sbjct: 119 RAPELS--VDQVLSGATTLAVMEGVGDHENIGALFRNAAGMGVDGVVFGAACADPLYRRS 176

Query: 177 AKSASGALEHIPYIRISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
            + + G +  +P+  +   T   Q+    +   GF+ + ++      L   +  DKIA++
Sbjct: 177 VRVSMGHVLTVPFATLPGTTTTWQRSLDQLKEQGFRVVSMTPAGTVDLWDAMDTDKIAIL 236

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +GAEG GL           A + M     +LNV+ +AA+A Y
Sbjct: 237 VGAEGPGLTEHAMAATDVRARIPMSPGTDSLNVATSAAIAFY 278


>gi|170754304|ref|YP_001782766.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169119516|gb|ACA43352.1| RNA methyltransferase, TrmH family [Clostridium botulinum B1 str.
           Okra]
          Length = 259

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 6/239 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ ++ +Q ++  + G      AL  N+   K+F    + N L  L    N+ +      
Sbjct: 17  REKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    + K +G     QG+           LD ++N   ++V D V DP N+G I+R+A 
Sbjct: 77  VNYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+ITTK      +    +S  G++ +IP I   NL + ++ +   GF+ +  S D
Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLQKKGFKLLVSSLD 192

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          + I + +G EG G+       +   A + MPG  ++LNV+ A ++  +
Sbjct: 193 TNSNFYDVNMENNIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAAESLNVAVACSIMTF 251


>gi|227113626|ref|ZP_03827282.1| putative methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 383

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+G I+RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 236 CVLALEDVGNPHNLGGIMRSCAHFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINAD 294

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L +  + G+  +  SS     L Q     K  ++LG EG GL     +       
Sbjct: 295 DFLSVLTEFRNAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 354

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           +   G +++LN+S A  + L  +  QN 
Sbjct: 355 IGGTGKVESLNISVATGILLSEWWRQNQ 382


>gi|307290546|ref|ZP_07570458.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0411]
 gi|306498401|gb|EFM67906.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0411]
          Length = 258

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S  G+  H+P ++   L
Sbjct: 114 LLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSMQGSHYHLPVLQ-REL 172

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           T+ +Q     G    G  L+  +    EQE   +  ALILG EG G+ P+     T   +
Sbjct: 173 TEVVQAFKKQGLPVFGTELNEAAIAYYEQEAV-EIYALILGNEGSGVSPELLAETTKNLY 231

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G  ++LNV+ AA V ++  +N+
Sbjct: 232 IPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|288799638|ref|ZP_06405097.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332886|gb|EFC71365.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 267

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 16/192 (8%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P+ T     +  I G       L     P L       + +  + ++D V D  NIGAI
Sbjct: 78  IPIYTGTRDMLASITGYTLSRGVLCAMKRPTLPSVESICKTASRIAIVDGVVDTTNIGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   DGI+ TK      +      + G++  IP+  + N    + ++  +GF+T+
Sbjct: 138 FRSAAALGIDGILLTKSSCDPFNRRAVGVSMGSIFLIPWTWLDN---NISEVSQYGFKTV 194

Query: 211 GLS--------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            ++        +D++   E+     K+A+ILG EG GL   T      +  + M   + +
Sbjct: 195 AMALRHNSIDINDARLKAEK-----KLAIILGTEGDGLAESTILDTDYVVKIPMYNAVDS 249

Query: 263 LNVSNAAAVALY 274
           LNV+ A+A+A +
Sbjct: 250 LNVAAASAIAFW 261


>gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
 gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
 gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
 gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
          Length = 265

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENSV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGAPYGEVTPAGSFALIVGNEGSGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|225871153|ref|YP_002747100.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700557|emb|CAW95049.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 245

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 76/141 (53%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L+ + DP N+G I+R+A A   DG+  +++ +   +    +S  G+  H+P  R +++
Sbjct: 104 LILEDIQDPGNLGTIIRTADAAKFDGVFLSEKSADVYNQKTLRSMQGSHFHLPIWR-TDI 162

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               Q M       +   LS DS    +   ++  +AL+LG EG+G+ P+    A  + H
Sbjct: 163 YQVSQVMQQQKIPVLATTLSQDSIDYKDLSARS-SLALVLGNEGQGISPEMAALADQLIH 221

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA + ++
Sbjct: 222 ISMPGQAESLNVAVAAGILIF 242


>gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
 gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
 gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
 gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
          Length = 265

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++          F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDNKAL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A S  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEI--LAKSDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|238896030|ref|YP_002920766.1| putative methyltransferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548348|dbj|BAH64699.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 361

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+GAI+RS   F   G++  +     ES    ++A G  EH+  I   
Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGD 272

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  D L +    G+  +  SS +  PL +     K+ L LG E  GL      +A     
Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVA 332

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359


>gi|238917600|ref|YP_002931117.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
 gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
          Length = 279

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 8/152 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASG 182
           D + ++ LL++++++ DP N+G ILR        G+I    T   Y+P       +S  G
Sbjct: 124 DMLTDNPLLILVENLQDPGNLGTILRMGEGAGVTGVIMSSNTVDIYNPKT----IRSTMG 179

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++  +P++ + + +DA+ +  + G +      D K     E   +  A ++G EG GL  
Sbjct: 180 SIFRVPFVYVQDFSDAVSQCKNAGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTE 239

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + A ++  + M G +++LN + A  +  Y
Sbjct: 240 DITKQADTLIRIPMQGEVESLNAAIACTILTY 271


>gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
 gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
          Length = 265

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 20/257 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYMV----PEAIVKVLRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMP--GIIKALN 264
              G + ++  P  +       ALI+G EG G+R   QE  T    +L++P  G  ++LN
Sbjct: 190 PVYGTALENGVPYGEVTPTGSFALIVGNEGNGVR---QEILTKTDQNLYIPIYGGAESLN 246

Query: 265 VSNAAAVALYITQNHFA 281
           V+ AA +  Y  Q+  A
Sbjct: 247 VAVAAGILTYYLQSPVA 263


>gi|218234920|ref|YP_002369360.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
 gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
          Length = 265

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--TGIVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGVF---AVCEKREKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENDV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
 gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
          Length = 265

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKQGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENSV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|307709738|ref|ZP_07646189.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307619440|gb|EFN98565.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 246

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 28/217 (12%)

Query: 66  RKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
            KIF L + +N LA      W +         +  PQ I  +V KE V Q          
Sbjct: 47  EKIFALESYRNQLAAFPQTIWVSEDILLDLADSQTPQGIVAVVQKEEVGQ---------- 96

Query: 123 SPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                 V  SQ   + L+ V DP N+G I+R+A A    G+I + + +   S    +S  
Sbjct: 97  ------VDFSQGKFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQ 150

Query: 182 GALEHIPYIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEG 237
           G+  H+P  R+S+   L +A  K  S       LS DS    E   I+N    L++G EG
Sbjct: 151 GSHFHLPIYRMSSQRLLEEA--KKASIPVLATTLSKDSVDYRELPSIEN--FVLVMGNEG 206

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 207 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|253689696|ref|YP_003018886.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756274|gb|ACT14350.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 382

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+G I+RS   F   GI+  +  +  ES    ++A G  EH+  I   
Sbjct: 235 CVLALEDVGNPHNLGGIMRSCAHFGVKGILV-QDAALLESGAAVRTAEGGAEHVKAINAD 293

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L +    G+  +  SS     L Q     K  ++LG EG GL     +       
Sbjct: 294 DFLSVLAEFRRAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 353

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           +   G +++LN+S A  + L  +  QN 
Sbjct: 354 IGGTGKVESLNISVATGILLSEWWRQNQ 381


>gi|85098226|ref|XP_960584.1| hypothetical protein NCU01404 [Neurospora crassa OR74A]
 gi|28922085|gb|EAA31348.1| predicted protein [Neurospora crassa OR74A]
 gi|38566824|emb|CAE76131.1| related to rRNA (guanine-N1-)-methyltransferase [Neurospora crassa]
          Length = 644

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 128/290 (44%), Gaps = 71/290 (24%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTV-----PPQT 100
           FLYG   V AAL +  RK+++L     A +  LA+      L     V+TV       + 
Sbjct: 331 FLYGTSVVEAALQSARRKLYKLYIYAGANREKLAKDAAIQKLAQRNKVETVFVNEEGLKM 390

Query: 101 IDKIVGKEAVHQGLALETAPLLSP---TLDAVRNSQ------------------------ 133
           +DK+ G    H G  LE +PL  P   +L  V +++                        
Sbjct: 391 MDKMSGSRP-HNGYILEASPLPQPPVISLGEVVDAESGQGTTGYKVVLGHQSHEEALING 449

Query: 134 --------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                         L++V+D + DP N+GAILRS        +  TKR S S + V  K+
Sbjct: 450 KSDFVAASSATHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRDSASLTPVALKA 509

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLE----QEI---- 224
           ++GA E +    I +L   LQ     G+       +T G S + +K L+    +EI    
Sbjct: 510 SAGASESLTLFSIDHLPKFLQDSRENGWLVYAAVPRTSG-SGNLQKHLDLHEIEEIDPLG 568

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHL-HMPG--IIKALNVSNAAAV 271
           KN  I L+LG+EG+GL  + +  A    ++ +M G  +I +LNVS AA +
Sbjct: 569 KNPCI-LLLGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGL 617


>gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus anthracis CI]
 gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 254

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V   L   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEVLK--AGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALTDGKFLL-LDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
 gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
          Length = 265

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|194366972|ref|YP_002029582.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
           R551-3]
 gi|194349776|gb|ACF52899.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
          Length = 278

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 14/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102
           + L LYG + V A  +   + + +L   ++ + R    L W   + +    + V    ++
Sbjct: 37  DELRLYGWNAVQALFDKRPQALRKLYLVESLIPRMQPVLKW--CVANRVGYRVVEEGDLN 94

Query: 103 KIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           K+      H+GL  +       PL     D      L + LD V +PHN GAILRSA  F
Sbjct: 95  KLAATTH-HEGLVADVLRAPVVPLAQWLEDLGEGPALALWLDGVGNPHNFGAILRSAAHF 153

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++     + + S   A+ A G  E +P +++ +   A+ ++ + GF       +  
Sbjct: 154 GVKALLLPAGSTLALSGAAARVAEGGAESVPLVQLPDNAQAMAQLRAAGFGLAATLVEGG 213

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YI 275
           + + +     ++  ++GAEG+G+             +   G +++LNV++A AV L  + 
Sbjct: 214 EDVFRASLPARLVYVMGAEGEGMDRSLASECDLQVSIPGSGAVESLNVASATAVLLAQWA 273

Query: 276 TQNH 279
           ++ H
Sbjct: 274 SRRH 277


>gi|297522035|ref|ZP_06940421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           OP50]
          Length = 103

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 53/95 (55%)

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A GA E +P IR++NL   ++ +       +G + ++   L Q     ++AL++GAEG+G
Sbjct: 2   ACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEG 61

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +R  T+E    +  + M G + +LNVS A  + L+
Sbjct: 62  MRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 96


>gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
 gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
          Length = 265

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 121/257 (47%), Gaps = 20/257 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHESEV--ALADGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMP--GIIKALN 264
              G + ++  P  +       ALI+G EG G+   +QE  A S  +L++P  G  ++LN
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGV---SQEILAKSDQNLYIPIYGGAESLN 246

Query: 265 VSNAAAVALYITQNHFA 281
           V+ AA +  Y  Q+  A
Sbjct: 247 VAVAAGILTYYLQSPVA 263


>gi|152971435|ref|YP_001336544.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150956284|gb|ABR78314.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 361

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+GAI+RS   F   G++  +     ES    ++A G  EH+  I   
Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVV-VQDAGVLESGAAIRTAEGGAEHVEPITGD 272

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  D L +    G+  +  SS +  PL +     K+ L LG E  GL      +A     
Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVA 332

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 333 IDGTGNVESLNVSVATGVLLAEWWRQN 359


>gi|78186184|ref|YP_374227.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
 gi|78166086|gb|ABB23184.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
          Length = 265

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 3/141 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+ LD V DP N G ILR+A     DG++         +A   +S++G+L  +P+ R  
Sbjct: 118 LLVALDEVQDPGNAGTILRTAAWLGADGLLAGPGTVDLYNAKTVRSSAGSLLGMPHTRAG 177

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252
           +L  AL+++   GF+ I  S + +         ++  L++G E  G+ P+ +  A  +  
Sbjct: 178 DLPAALRQLQKAGFKVICSSLEGEDFRSGGAWPERTVLVVGNEANGVGPEVRVLADRLVK 237

Query: 253 --HLHMPGIIKALNVSNAAAV 271
             H   P  +++LN + +AA+
Sbjct: 238 IPHGRGPARVESLNAAVSAAI 258


>gi|320667558|gb|EFX34478.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61]
          Length = 345

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++VL++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLVLENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|319405240|emb|CBI78845.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
           15-3]
          Length = 271

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 10/194 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P+  VP + +D I G   VH+G+      +  PLL   L  +    L+ VL  +++  N+
Sbjct: 78  PIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPLLKEFLQNLPEKALISVLCGISNHDNM 136

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A AF+  GII  K           + ++GA  ++PY +  ++   +  + +  F
Sbjct: 137 GAIFRNAAAFASTGIIIDKTSCDPLYRKSIRVSAGAALNVPYTQGDDIDSIVTALSNANF 196

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               LS  + + L+        ALI G EG GL     + + ++  + M     ++NV+ 
Sbjct: 197 HLYALSPSASRYLKDAKATKHTALIFGTEGNGLPAHILQKSETL-RIPMAYGFDSINVAT 255

Query: 268 AAAVALYITQNHFA 281
           A+ +AL     HFA
Sbjct: 256 ASGLAL----AHFA 265


>gi|237713180|ref|ZP_04543661.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409427|ref|ZP_06085969.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647368|ref|ZP_06724961.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294809011|ref|ZP_06767733.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446838|gb|EEO52629.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352639|gb|EEZ01737.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637327|gb|EFF55752.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294443736|gb|EFG12481.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
          Length = 267

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 6/151 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  + ++ + V++ V D  NIGAI RSA A   D I+ T+      +    + + G++  
Sbjct: 114 EICKGARRIAVIEGVVDTTNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFL 173

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKGLRPK 243
           IP+   + L  +  ++H  GF+T+ ++   K   ++  I     K+A+++G EG GLR +
Sbjct: 174 IPW---AWLDGSPNELHKLGFRTVAMALTEKSISIDSPILATEPKLAIVMGTEGDGLRNE 230

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           T   A  +  + M   + +LNV+ A+A+A +
Sbjct: 231 TITEADYVVRIPMANGVDSLNVAAASAIAFW 261


>gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
           KBAB4]
 gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
           KBAB4]
          Length = 254

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++          F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDNKAL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +        ++LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKVLRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A S  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEI--LAKSDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|291556141|emb|CBL33258.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
          Length = 303

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 22/198 (11%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + +  + G E     L     P      +  RN++ + VL+++ D  N GAI
Sbjct: 106 IPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGAI 165

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSA----SGALEHIPYIRISNLTDALQK----- 201
           +RSA A   D ++ T    PS    L + A     G +  IP+  I       Q      
Sbjct: 166 IRSAAALGIDAVLIT----PSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAY 221

Query: 202 MHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           ++S GF+T  ++      S   K L+ E   +++A+ILG+EG GL  KT +       + 
Sbjct: 222 LNSLGFKTAAMALTDNSVSIDDKTLQSE---ERLAIILGSEGYGLSQKTIDGCDYTVKIP 278

Query: 256 MPGIIKALNVSNAAAVAL 273
           M   + +LNV  AAAVA 
Sbjct: 279 MYHGVDSLNVGAAAAVAF 296


>gi|148993166|ref|ZP_01822732.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|147928140|gb|EDK79158.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP9-BS68]
          Length = 236

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 72  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 116

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 117 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 175

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 176 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 233


>gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 289

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 10/251 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLP 88
           ++ + S +++    S    +   GV  V   L +  R    LL T+  LA L  D A +P
Sbjct: 22  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLAGVP 80

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147
            P+   +     + ++VG   +++G+      +  P + + +  S+ + VL+ VND  N+
Sbjct: 81  VPYYRTSA--DVMARVVGFH-LNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A     D +I     +        + + G    +PY R ++    L+ +   GF
Sbjct: 138 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGF 197

Query: 208 QTIGLS-SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + + ++   S   L + +   + D++A+++GAEG GL P     +     + M     +L
Sbjct: 198 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 257

Query: 264 NVSNAAAVALY 274
           NV+ AAA+A Y
Sbjct: 258 NVATAAALAFY 268


>gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
 gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
 gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
 gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
 gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
 gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
 gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
 gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
 gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 265

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--TGIVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
          Length = 254

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--TGIVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046]
          Length = 253

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++++D V DP NIG ++R+A A   D ++  K    + +    +SA G+  HIP +R  +
Sbjct: 111 VLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSAQGSHFHIPVVR-GD 169

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + ++ + + G +  G S D     ++   +D  ALI+G EG G+ P+          +
Sbjct: 170 LMEWVENLQADGIRVFGTSLDESISYKKVEPSDSFALIVGNEGSGINPQILAKTDQNIII 229

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LNV+ A  + LY
Sbjct: 230 PILGGAESLNVAVATGILLY 249


>gi|168489978|ref|ZP_02714177.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
 gi|183571629|gb|EDT92157.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
          Length = 246

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
 gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
 gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
 gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
          Length = 257

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 112/254 (44%), Gaps = 14/254 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  I +L+ +       DW    
Sbjct: 16  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVITELIVSDQTDLPKDWTVTD 69

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +        ++LD + DP N+
Sbjct: 70  VEMYIV----PEAIVKVLRETETTQGVF---AVCEKHEKEIALTDGKFLLLDGLQDPGNL 122

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 123 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKEKNV 181

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G S ++  P  +       ALI+G EG G+R +         ++ + G  ++LNV+ 
Sbjct: 182 PVYGTSLENGIPYGEVTPTGSFALIVGNEGNGVRLEILTKCNQNLYIPIYGGAESLNVAV 241

Query: 268 AAAVALYITQNHFA 281
           AA +  Y  Q+  A
Sbjct: 242 AAGILTYYLQSPVA 255


>gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
 gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
 gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
 gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
 gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
 gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
 gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
 gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
 gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
 gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
 gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
 gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
 gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
 gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
          Length = 265

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|331269142|ref|YP_004395634.1| rRNA methylase [Clostridium botulinum BKT015925]
 gi|329125692|gb|AEB75637.1| rRNA methylase [Clostridium botulinum BKT015925]
          Length = 260

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +++D + DP N+G I+RSA A    G+ITTK      +    +S  G++  IP +   
Sbjct: 113 FYVLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLRSTMGSIFKIPIVE-D 171

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N  + L+ + S GF+ +  S D+K          K  + +G EG G+     E       
Sbjct: 172 NDFEVLKNLKSKGFKVVVSSLDTKNNFYDIDLTGKSIICVGNEGNGVSDYIYELGDEKVK 231

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LN   AA++ +Y
Sbjct: 232 IPMPGDAESLNAGVAASIMMY 252


>gi|325496341|gb|EGC94200.1| putative methyltransferase [Escherichia fergusonii ECD227]
          Length = 370

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 223 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 281

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +    +K+ L+LG E +GL    ++       
Sbjct: 282 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVK 341

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 342 IDGTGNVAGLNISVATGVLLGEWWRQN 368


>gi|225572082|ref|ZP_03780946.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040416|gb|EEG50662.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
           10507]
          Length = 290

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 21/197 (10%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T P   + ++ G       L     P      +    ++ + VL++V +P N+GAI 
Sbjct: 95  PVYTAPFHVLTQLTGFALTRGMLCAMRRPKQPSVGEICAGARRIAVLENVVNPTNVGAIF 154

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW------ 205
           RSA A + DG++ T+  S        + + G +  IP+         L K  SW      
Sbjct: 155 RSAAALNVDGVLLTQACSDPLYRRAIRVSMGTVFQIPW-------TFLDKQFSWPLQGIA 207

Query: 206 -----GFQTI--GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                GFQT+   L  DS +  +  + +  ++A++LG EG GL  +T         + M 
Sbjct: 208 HLRELGFQTVAMALREDSLRVDDSRLVDAPRLAIVLGTEGDGLACETIAACDYTVCIPMS 267

Query: 258 GIIKALNVSNAAAVALY 274
             + +LNV+ A++VA +
Sbjct: 268 HGVDSLNVAAASSVAFW 284


>gi|149003632|ref|ZP_01828497.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758364|gb|EDK65364.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
          Length = 236

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 72  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 116

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 117 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 175

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 176 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 233


>gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
 gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
          Length = 264

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY---I 190
           + + LD V DP N+G I+R+AVA    GI   K      +    +S   AL  IP    +
Sbjct: 116 VYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPVYEDV 175

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            +S L D + + +   + T   + +  KP      + +  LILG EG G+ P+       
Sbjct: 176 TLSMLNDLIAESNMSTYVT---ALEESKPYNMVTYDKRCMLILGNEGNGVTPEVMNLCKH 232

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M G I++LNVS AAA+ +Y  Q   
Sbjct: 233 RIMIPMYGDIESLNVSVAAALCMYKAQEQL 262


>gi|227530112|ref|ZP_03960161.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
           49540]
 gi|227349968|gb|EEJ40259.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
           49540]
          Length = 288

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 10/153 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + VL+ V +P NIGAI RSA A   DG++ T   +       ++ + G +  +P+  +  
Sbjct: 135 IAVLESVVNPTNIGAIFRSAAALGIDGVVVTSDSADPFYRRASRVSMGTVFQVPWTYVDA 194

Query: 195 ---LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                + +  +H  G++T  +     + +   P   ++  DK+A+ILG+EG GLR KT  
Sbjct: 195 KLWQAEGISLLHRLGYKTAAMALRHNTVNIDDPQLDQV--DKLAIILGSEGPGLREKTIA 252

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +     + M   + +LNV+ A+A+A +   N 
Sbjct: 253 QSDFTIKIPMAPGVDSLNVAAASALAFWELGNR 285


>gi|225857547|ref|YP_002739058.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
 gi|225724882|gb|ACO20734.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
          Length = 246

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|167750209|ref|ZP_02422336.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
 gi|167656771|gb|EDS00901.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
          Length = 303

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 16/195 (8%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + +  + G E     L     P      +  RN++ + VL+++ D  N GAI
Sbjct: 106 IPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGAI 165

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSA----SGALEHIPYIRISNLTDALQK----- 201
           +RSA A   D ++ T    PS    L + A     G +  IP+  I       Q      
Sbjct: 166 IRSAAALGIDAVLIT----PSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAY 221

Query: 202 MHSWGFQT--IGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++S GF+T  + L+ +S    ++ ++++K +A+ILG+EG GL  KT +       + M  
Sbjct: 222 LNSLGFKTAAMALTDNSVSIDDKTLQSEKRLAIILGSEGYGLSQKTIDGCDYTVKIPMYH 281

Query: 259 IIKALNVSNAAAVAL 273
            + +LNV  AAAVA 
Sbjct: 282 GVDSLNVGAAAAVAF 296


>gi|325963236|ref|YP_004241142.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469323|gb|ADX73008.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 269

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           +H+G +A    P   P  D +  ++ + VL+ + D  N+GAI RSA A   D ++ + R 
Sbjct: 95  LHRGAMAAMQRPAPVPLPDLLAGARRVAVLEDIVDHTNVGAIFRSAAALDIDAVLVSPRC 154

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN 226
                    + + G +  +P+ R+S+    L  +   GF    + L++D++       +N
Sbjct: 155 GDPLYRRSVRVSMGTVFQVPWARLSSWPQDLYLLKEHGFTVAALELTADARDVDAVAAQN 214

Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +K+AL+LG EG G+  +T         + M   + +LNV+ A+AVA +
Sbjct: 215 PEKLALVLGTEGAGMSAETLAAVDLAVKIPMRNGVDSLNVAAASAVAFW 263


>gi|149012438|ref|ZP_01833469.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763494|gb|EDK70430.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP19-BS75]
          Length = 246

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|56750360|ref|YP_171061.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56685319|dbj|BAD78541.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 258

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPY 189
           ++ LL+ ++ + DP N+G I+R+A A   DG+ +T     P    VL ++++G    +P 
Sbjct: 107 SASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVL-RASAGQWFRLP- 164

Query: 190 IRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             I+  TD  Q + SW   G+Q +     +   L Q        L+LG EG GL P    
Sbjct: 165 --IAIATDLGQTLRSWQQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAA 222

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A S   +     +++LNV+ AAA+ LY
Sbjct: 223 IADSAVTIPQAAGVESLNVAIAAALLLY 250


>gi|148381081|ref|YP_001255622.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930840|ref|YP_001385454.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
 gi|153936028|ref|YP_001388861.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
 gi|168179627|ref|ZP_02614291.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
           2916]
 gi|148290565|emb|CAL84694.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
 gi|152926884|gb|ABS32384.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931942|gb|ABS37441.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
           Hall]
 gi|182669725|gb|EDT81701.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
           2916]
          Length = 259

 Score = 65.5 bits (158), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ ++ +Q ++  + G      AL  N+   K+F    + N L  L    N+ +      
Sbjct: 17  REKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    + K +G     QG+           LD ++N   ++V D V DP N+G I+R+A 
Sbjct: 77  VSYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GIITTK      +    +S  G++ +IP I   NL + ++ +   GF+ +  S D
Sbjct: 134 AAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLRKKGFKLLVSSLD 192

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          D + + +G EG G+       +     + MPG  ++LNV+ A ++  +
Sbjct: 193 TNSNFYDVNMKDNMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251


>gi|218547893|ref|YP_002381684.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218355434|emb|CAQ88042.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|323967625|gb|EGB63038.1| SpoU rRNA methylase [Escherichia coli M863]
 gi|323978389|gb|EGB73474.1| SpoU rRNA methylase [Escherichia coli TW10509]
 gi|327252291|gb|EGE63963.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli STEC_7v]
          Length = 345

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +    +K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|169833146|ref|YP_001695327.1| rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995648|gb|ACA36260.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 246

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
 gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
          Length = 254

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 119/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+             A+ + + L+ LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEV--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|57505789|ref|ZP_00371714.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
           upsaliensis RM3195]
 gi|57015819|gb|EAL52608.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
           upsaliensis RM3195]
          Length = 229

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 2/161 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG  ++           ++ S+ +++L  ++D  N+GAI+R+A A   DG++   +   
Sbjct: 61  HQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNMGAIIRTAYALGVDGLLFIGKNLA 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            ES V  +S+SGA   +P    ++   AL ++    F+  G     ++         K  
Sbjct: 121 QESIV--RSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGKKV 178

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           LI+G+EG GL  K  +       + M     +LNVS A A+
Sbjct: 179 LIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAI 219


>gi|327389138|gb|EGE87484.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA04375]
          Length = 212

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 48  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 92

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 93  GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 151

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 152 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209


>gi|81300008|ref|YP_400216.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942]
 gi|81168889|gb|ABB57229.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           7942]
          Length = 234

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPY 189
           ++ LL+ ++ + DP N+G I+R+A A   DG+ +T     P    VL ++++G    +P 
Sbjct: 83  SASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVL-RASAGQWFRLP- 140

Query: 190 IRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             I+  TD  Q + SW   G+Q +     +   L Q        L+LG EG GL P    
Sbjct: 141 --IAIATDLGQTLRSWQQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAA 198

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A S   +     +++LNV+ AAA+ LY
Sbjct: 199 IADSAVTIPQAAGVESLNVAIAAALLLY 226


>gi|116516909|ref|YP_817193.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae D39]
 gi|172079590|ref|ZP_02709224.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
 gi|116077485|gb|ABJ55205.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae D39]
 gi|172042492|gb|EDT50538.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
 gi|332199399|gb|EGJ13476.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47368]
          Length = 246

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|15903830|ref|NP_359380.1| rRNA/tRNA methylase [Streptococcus pneumoniae R6]
 gi|15459472|gb|AAL00591.1| Possible rRNA/tRNA methylase [Streptococcus pneumoniae R6]
          Length = 252

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 88  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 132

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 133 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSPALLDETKKVAIPVLATT-LSKD 191

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 192 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 249


>gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 254

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|183603699|ref|ZP_02718929.2| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|221232698|ref|YP_002511852.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|237650991|ref|ZP_04525243.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
           1974]
 gi|298230170|ref|ZP_06963851.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254776|ref|ZP_06978362.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503744|ref|YP_003725684.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|183575321|gb|EDT95849.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|220675160|emb|CAR69744.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|298239339|gb|ADI70470.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 246

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|149007448|ref|ZP_01831091.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|225861791|ref|YP_002743300.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|147761020|gb|EDK67989.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|225727319|gb|ACO23170.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|332071951|gb|EGI82439.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17545]
          Length = 246

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119958803|gb|ABM15808.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 275

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ-LLATKNALARLDWD-AN 86
           D++ + S +++    S    +   GV  V   L   SR + + LL T   L  L  D A 
Sbjct: 21  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRML--ASRFVPRALLGTDRRLTELGTDLAG 78

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSP--TLDAVRNSQLLMVLDHVND 143
           L  PF       + +  +VG       LA  + AP L+    LD  R    + VL+ VND
Sbjct: 79  LDAPF--YRASAEVMADVVGFHLNRGVLASASRAPELTVPHVLDGART---VAVLEGVND 133

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G++ R+A     DG+I     +        + + G    +P+ + +N    L+ + 
Sbjct: 134 HENLGSVFRNAAGLGVDGVIFGSGCADPLYRRAVRVSMGHALLVPFAKAANWPGDLELLR 193

Query: 204 SWGFQTIGLSSD-SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             GF+ + ++ D + + L Q +      ++A+++GAEG GL+  T   +     + M   
Sbjct: 194 DQGFRLLAMTPDPTVQTLAQAMSGLAEQRVAILVGAEGPGLKEHTMRASDVRVRIPMSRG 253

Query: 260 IKALNVSNAAAVALY 274
             +LNV+ AAA+A Y
Sbjct: 254 TDSLNVATAAALAFY 268


>gi|224437650|ref|ZP_03658597.1| hypothetical protein HcinC1_06720 [Helicobacter cinaedi CCUG 18818]
 gi|313144097|ref|ZP_07806290.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
 gi|313129128|gb|EFR46745.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
          Length = 230

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 6/165 (3%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG+  +  P  + +L  ++    L+VL  ++D  NIG+I R+A A    GI+     S 
Sbjct: 61  HQGILAQIIPPQALSLKELKEKDSLLVLCEISDVGNIGSIFRTAYALGVGGIVICLP-SL 119

Query: 171 SESAV--LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S+ A+  + + +SGA  ++PY   + + D L ++ +  F  +G     ++ +E      K
Sbjct: 120 SQKAIEGIVRLSSGAFLNMPYGVFTQVFDVLNELKNANFTLVGADMRGQERIENP---QK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL LG+E  GL  + +    +M  + M     +LNV+ A  + +
Sbjct: 177 WALFLGSESMGLSARLKHKLDTMLSIKMKHHFDSLNVAVATGILI 221


>gi|15901796|ref|NP_346400.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|111658860|ref|ZP_01409481.1| hypothetical protein SpneT_02000031 [Streptococcus pneumoniae
           TIGR4]
 gi|14973480|gb|AAK76040.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|301802651|emb|CBW35417.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           INV200]
          Length = 246

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|225859729|ref|YP_002741239.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
 gi|225720207|gb|ACO16061.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
 gi|301794916|emb|CBW37377.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|332072159|gb|EGI82645.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41301]
          Length = 246

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|90419031|ref|ZP_01226942.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337111|gb|EAS50816.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 297

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 12/251 (4%)

Query: 32  KMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPH 89
           +++ F N + R     E     G   +   L +   +   LL  +N LA L +  A  P 
Sbjct: 41  RVEPFRNVRDRDLVGREGFIAEGTVVLDQLLVSRRFRPTSLLILRNRLAGLAERLARFPG 100

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDP 144
             P+        D I G  AVH+G+    A     P  + T+ A     +++ +   N  
Sbjct: 101 DAPIHVADQAVFDGIAGF-AVHRGVLAHGAERGARPSAADTIAAAGGRPIIIAVGLSNH- 158

Query: 145 HNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
            N+GAI R+A AF    ++  T    P     L  S   AL  +P+ R       +    
Sbjct: 159 DNLGAIFRNAAAFGAGAVLCDTTSCHPLYRKALRVSVGTALT-VPWCREGTGESLVAACR 217

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G++ + LS   + PL   +   + AL LGAEG+GL P       ++     PG + +L
Sbjct: 218 AAGYRVLALSPAGETPLAGLVTAGRTALCLGAEGQGLSPDLMRAVETVRIEMAPG-LDSL 276

Query: 264 NVSNAAAVALY 274
           NV+ +AA+ L+
Sbjct: 277 NVATSAAIVLH 287


>gi|269123340|ref|YP_003305917.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
 gi|268314666|gb|ACZ01040.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
          Length = 254

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 9/145 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALE-HIPY 189
           L++LD + DP NIG I+R+ VA +   +I TK     YSP    V+  +  G    +I Y
Sbjct: 108 LIILDAIQDPGNIGTIIRTLVAANYRTLILTKSSVDVYSPK---VVRATMGGIFNVNIIY 164

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               N+   L K + +   +  LS +S    E E+K DK A I G EG G+  +  E + 
Sbjct: 165 EEKENIIKFL-KENGYNIISTALSKESIDYREVELKKDKNAYIFGNEGGGVSDEFLEISH 223

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
             A + + G I++LNVS A  + LY
Sbjct: 224 QKAIIPIYGKIESLNVSIALGIFLY 248


>gi|157164272|ref|YP_001466038.1| RNA methyltransferase [Campylobacter concisus 13826]
 gi|112801236|gb|EAT98580.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter concisus
           13826]
          Length = 226

 Score = 65.5 bits (158), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 3/161 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG     +         ++    + VL  ++D  NIGAI RSA A  C+G++   + S 
Sbjct: 61  HQGFLASVSEFEFSDFSELKKLNFIAVLYGISDVGNIGAIARSAYALGCEGLVIVTK-SV 119

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           +   VL +S+SGA   IP     +    L ++   GF+    +S+ K   E +    + A
Sbjct: 120 NMQGVL-RSSSGAAYEIPIAIFEDGLSLLNELKQCGFRLYATASNGKNIKEMKFAGKR-A 177

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L++G+EG+G+  K          + +     +LNVS A A+
Sbjct: 178 LVMGSEGEGIPQKALAKCDECVGIKLKDGWDSLNVSAAFAI 218


>gi|300718026|ref|YP_003742829.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299063862|emb|CAX60982.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 345

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +S  L        ++ L+ + +PHN+G ++RS   F   G++     S  ES    ++A 
Sbjct: 187 VSEWLSNAGEKDCVVALEQIGNPHNLGGMMRSCAHFGAKGLLVDD-ASLLESGAAVRTAE 245

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G  EH+  I   +  + L      G+  +  SS    PL Q     K  L+LG E  GL 
Sbjct: 246 GGAEHVQAISGESFAEGLNAFRKAGYTIVTTSSHKGTPLAQAELPAKTVLVLGQERDGLS 305

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
             T +       +   G +++LNVS A  + L  +  QN
Sbjct: 306 DSTWQQGDLSVSIGGTGNVESLNVSVATGILLAEWWRQN 344


>gi|163758758|ref|ZP_02165845.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
 gi|162284048|gb|EDQ34332.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
          Length = 289

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 22/210 (10%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALET---APLLSPTLDAVRNSQLL 135
           RLD D       PV     + +D  VG  A+H+G LAL      P L   L+ + +  L+
Sbjct: 88  RLDADC------PVYVAGREVLDAAVGF-AMHRGILALGRHLPPPSLGGFLEGLPDQALV 140

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V   + +  N+G I R+A  F  D ++  +           + + GA   +P+ R  ++
Sbjct: 141 VVACGIANHDNVGGIFRNAGVFGADAVVLDQSCCDPLYRKAIRVSVGAALRVPFCRGGSI 200

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              + ++ S GF+ +GLS    + L +     +  L+LG EG+GL    +E   ++A L 
Sbjct: 201 LALVGELVSHGFEVVGLSPRGAEELSRFQPGRRQVLLLGTEGEGL---PEELLNALATLR 257

Query: 256 M---PGIIKALNVSNAAAVALYITQNHFAK 282
           +   PG + +LNV+  + +AL+    H AK
Sbjct: 258 IEQAPG-LDSLNVATTSGIALW----HIAK 282


>gi|332072055|gb|EGI82542.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17570]
          Length = 212

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 48  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 92

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 93  GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 151

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 152 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209


>gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT]
 gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT]
          Length = 262

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +++D V DP N+G I+RSA A    G+I TK      +    +S  G++  IP I   N 
Sbjct: 115 ILIDKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTLRSTMGSIFKIPIIE-DND 173

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + +  +   GF+ I  S D++          K+ + +G EG G+  +          + 
Sbjct: 174 FEVINDLKLKGFKLIVSSLDTENNFFDIDLTKKVIICVGNEGNGVSDEVYNLGDERVKIP 233

Query: 256 MPGIIKALNVSNAAAVALY--ITQNH 279
           MPG  ++LNV  AA++ +Y  + QNH
Sbjct: 234 MPGDAESLNVGVAASIMMYEVVRQNH 259


>gi|262182925|ref|ZP_06042346.1| hypothetical protein CaurA7_02930 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 273

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 14/196 (7%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150
           PV  V   T+ ++ G + +H+GL        + T+D V   ++ L +++ V D  NIG++
Sbjct: 71  PVYQVTRATLGEVTGFD-MHRGLVAAADRAEAWTVDEVIEGARTLAIMEGVGDHENIGSL 129

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI---PYIRI----SNLTDALQKMH 203
            R+A     DGI+     S +   +  +S   ++ H+   P+ R     +     L+++ 
Sbjct: 130 FRNAAGMDVDGILLG---SGAADPLYRRSVRVSMGHVLRLPWARFDGGFTTWQRGLEQLR 186

Query: 204 SWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             GF+ + L+   D+    +     DK+AL++GAEG GL           A + M     
Sbjct: 187 EKGFRLVSLTPHPDAVHIADALEGADKVALLVGAEGPGLTEHAMRATNVRARIPMAEGTD 246

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+ +AA+A Y  Q
Sbjct: 247 SLNVATSAAIAFYERQ 262


>gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601]
          Length = 252

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 122/266 (45%), Gaps = 20/266 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I SL++ H        + +KK+Q+  +K R  S      + G H V  AL      + 
Sbjct: 2   EVITSLQNVHV-------KTWKKLQT--RKGRQKSG--QYLVEGFHLVEEALAQDGL-VK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +++ TK+ +            F V  V  + +   +      QG+      +L P++  +
Sbjct: 50  EVIYTKDTILPFSLTET---AFDVYEVTRE-VSHAISDTKTDQGV-FAVVEMLEPSILML 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              + L+V D V DP N+G ++R+A A   D ++  +  +   +  + +SA G+  HIP 
Sbjct: 105 FGKRFLLV-DAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSAQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ +NL + +  +   G   IG L  +    LE     + +AL++G EG G+     E  
Sbjct: 164 IQ-ANLLEWIGGLEEEGVPVIGALLDEHATKLEDIGPKETLALVVGNEGAGISAPIVERL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           +   ++ + G  ++LNV+ AA + +Y
Sbjct: 223 SERVYIPIYGKSESLNVAVAAGILMY 248


>gi|226950562|ref|YP_002805653.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
           Kyoto]
 gi|226840837|gb|ACO83503.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
           Kyoto]
          Length = 259

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 6/239 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ ++ +Q ++  + G      AL  N+   K+F    + N L  L    N+ +      
Sbjct: 17  REKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    + K +G     QG+           LD ++N   ++V D V DP N+G I+R+A 
Sbjct: 77  VNYFVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GIITTK      +    +S  G++ +IP I   NL + ++ +   GF+ +  S D
Sbjct: 134 AAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLRKKGFKLLVSSLD 192

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          D + + +G EG G+    +  +     + MPG  ++LNV+ A ++  +
Sbjct: 193 TNSNFYDVNMKDNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAAESLNVAVACSIMTF 251


>gi|332199288|gb|EGJ13366.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41317]
 gi|332199985|gb|EGJ14059.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47901]
          Length = 212

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 48  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 92

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 93  GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 151

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 152 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209


>gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
 gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
          Length = 257

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 63/130 (48%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD++ DP N+G I R+A A    GI+ +       +    +S  GA+  +P++ + +
Sbjct: 111 ILVLDNLQDPGNLGTIFRTAEAAGVTGILMSGDCVDIYNPKTIRSTMGAVYRMPFLYVED 170

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           + + +  +     +      D K   ++E      A ++G EG GLRP+  E A     +
Sbjct: 171 MIEGIDNLKKNNIRVYAAHLDGKNSYDKEDYCGGTAFLIGNEGNGLRPEVAEKADVWVRI 230

Query: 255 HMPGIIKALN 264
            M G  ++LN
Sbjct: 231 PMEGQAESLN 240


>gi|227823292|ref|YP_002827264.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
 gi|227342293|gb|ACP26511.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
          Length = 276

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 7/209 (3%)

Query: 71  LLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPT 125
           +L  +N LA L +  A  P   PV     +  D I G   +H+G LAL   +  P     
Sbjct: 61  ILLLENRLAGLAELLAEFPADVPVFVADARVFDAIAGFN-MHRGVLALGRSDAVPDRDAL 119

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           + A+  S L++    +++  N+G++ R+A AF  D ++              + + G++ 
Sbjct: 120 IAALPASSLVLAACGLSNHDNMGSLFRNAAAFGVDAVLMDAASCDPMYRKSIRVSVGSVL 179

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P+ R     + ++++H+ GF   GLS   +  + +     ++AL++G EG+GL P+  
Sbjct: 180 TLPFARQGTAAELIERLHAAGFAIWGLSPRGETEVTEIPPAQRVALLVGTEGEGL-PQAV 238

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +A   A +     + +LNV+ AA +AL+
Sbjct: 239 LSAVRTARIRQRPGLDSLNVAMAAGIALH 267


>gi|168181825|ref|ZP_02616489.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
 gi|237796588|ref|YP_002864140.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
           657]
 gi|182675129|gb|EDT87090.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
 gi|229263217|gb|ACQ54250.1| RNA methyltransferase, TrmH family [Clostridium botulinum Ba4 str.
           657]
          Length = 259

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ ++ +Q ++  + G      AL  N+   K+F    + N L  L    N+ +      
Sbjct: 17  REKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    + K +G     QG+           LD ++N   ++V D V DP N+G I+R+A 
Sbjct: 77  VSYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+ITTK      +    +S  G++ +IP I   NL + ++ +   GF+ +  S D
Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLQKKGFKLLVSSLD 192

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          D + + +G EG G+       +     + MPG  ++LNV+ A ++  +
Sbjct: 193 TNSNFYDVNMKDDMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251


>gi|317495389|ref|ZP_07953758.1| SpoU rRNA methylase [Gemella moribillum M424]
 gi|316914448|gb|EFV35925.1| SpoU rRNA methylase [Gemella moribillum M424]
          Length = 177

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 5/142 (3%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD + DP N+G I+R+A AF+ D II  K  +      + +S  G+  HI      +
Sbjct: 32  VLILDRIQDPGNLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFENID 91

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMA 252
           +   + +M  +      L +D  K LE E+ N    +A+I G EG G+  +      ++ 
Sbjct: 92  IKQLVTEMKEFNIYATSLKAD--KYLE-ELDNITGHVAIIFGNEGSGVTDEILGEVNNLL 148

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            ++MPG  ++LNVS AA + ++
Sbjct: 149 KINMPGRAESLNVSIAAGIVMH 170


>gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
 gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
          Length = 251

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/251 (22%), Positives = 116/251 (46%), Gaps = 16/251 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           + +KK+    +K R  +    LFL  G H V  A+ + +  + +L+  +       W+  
Sbjct: 13  KQWKKL--LTKKGRDET---GLFLLEGFHLVEEAIKS-NAPLVELIVDERTAVPPGWNVT 66

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV T+  + + + +      QG+A      L   L+ V+ +   +++D V DP N
Sbjct: 67  ---GVPV-TIVTEAVMRAISSTETPQGIA-AVCRKLPAELEGVKTA---LLIDAVQDPGN 118

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ++R+A A   D +I  +  +   +  + ++  G+L H+P ++  +L   + +    G
Sbjct: 119 LGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLPVVK-GDLAQWIARFKEQG 177

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G + ++        ++   A+++G EG G+RP      T   ++ + G  ++LNV+
Sbjct: 178 IPVYGTALENAVDYRTVPQSSSFAILVGNEGSGVRPDLLRLTTENVYIPIYGRAESLNVA 237

Query: 267 NAAAVALYITQ 277
            AA + LY  Q
Sbjct: 238 VAAGILLYSLQ 248


>gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 269

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 2/154 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           LS  L    N  LLM+L+ + DP N+G ILR+       G+I ++      +  + +S  
Sbjct: 108 LSEILSGEENP-LLMILEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTM 166

Query: 182 GALEHIPYIRISNLTD-ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           G++  +P I ++++ D  L  +   G  T     + +   ++E      A ++G EG GL
Sbjct: 167 GSVYRMPIIYVNSIEDEVLPLLKEKGITTYAAHLEGRNDYDKECYTKGTAFLIGNEGNGL 226

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                E A ++  + M G +++LN + A+ + +Y
Sbjct: 227 SEHLTERADTLIKIPMQGKVESLNAAMASGILMY 260


>gi|225388537|ref|ZP_03758261.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
           DSM 15981]
 gi|225045382|gb|EEG55628.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
           DSM 15981]
          Length = 279

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 70/141 (49%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            LM+L+ + DP N+G ILR+       G++  +  +   +  + +S  G++  +P++ + 
Sbjct: 127 CLMILETLQDPGNLGTILRAGEGAGITGLVMNRDTADIYNPKVIRSTMGSILRVPFVYVD 186

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L+ AL ++ S G +            +QE     I  ++G E  GL  +T   A     
Sbjct: 187 DLSAALAQIKSAGVRLFAAHLKGTNNYDQEDYTGNIGFLIGNEAAGLTEETAAMADCYIK 246

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + A++V ++
Sbjct: 247 IPMAGQVESLNAAVASSVLMF 267


>gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
          Length = 278

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 74/146 (50%), Gaps = 8/146 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           L++L+ + DP N+G ILR+       G+I    T   Y+P     + +S  G++  +P++
Sbjct: 124 LVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPK----VIRSTMGSVYRVPFV 179

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + +L  A++++   G +        +K  +Q+        ++G E  GL  +T E A +
Sbjct: 180 YVEDLAGAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADA 239

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M G +++LN + AA++ +Y T
Sbjct: 240 YIKIPMLGKVESLNAAVAASILMYET 265


>gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 270

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 12/253 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVS---AALNNPSRKIFQLLATKNALARLDWDA 85
           D++ + S +++    S    +   GV  V    A+   P      LL T   L  L  D 
Sbjct: 17  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTPR----ALLGTDRRLTELGTDL 72

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +     P      + + ++VG       LA  + P      DA+  ++ + VL+ VND  
Sbjct: 73  DAVDA-PFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARTVAVLEGVNDHE 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I R+A     D +I     +        + + G    +P+ R +   D L  +   
Sbjct: 132 NLGSIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARAAAWPDELNTLRDK 191

Query: 206 GFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           GFQ + ++    +D+       +  +++A ++GAEG GL  +    +     + M     
Sbjct: 192 GFQLLAMTPDPAADTLATAMTALAGERVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTD 251

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AAA+A Y
Sbjct: 252 SLNVATAAALAFY 264


>gi|293372222|ref|ZP_06618608.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|298482640|ref|ZP_07000824.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|292632798|gb|EFF51390.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|298271103|gb|EFI12680.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
          Length = 280

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 7/155 (4%)

Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           P+++ V R ++ ++V++ V D  NIGAI RSA A   D I+ T+      +    + + G
Sbjct: 110 PSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMG 169

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKG 239
           ++  IP+  +    + L+K    GF+T+ ++   K   ++  I     K+A+++G EG G
Sbjct: 170 SVFLIPWTWLDGSPNELRKQ---GFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDG 226

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L+ +T   A  +  + M   + +LNV+ A+A+A +
Sbjct: 227 LQNETINEADYVVRIPMANGVDSLNVAAASAIAFW 261


>gi|160887319|ref|ZP_02068322.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
 gi|156107730|gb|EDO09475.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
          Length = 280

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 84/155 (54%), Gaps = 7/155 (4%)

Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           P+++ V R ++ ++V++ V D  NIGAI RSA A   D I+ T+      +    + + G
Sbjct: 110 PSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMG 169

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKG 239
           ++  IP+  +    + L+K    GF+T+ ++   K   ++  I     K+A+++G EG G
Sbjct: 170 SVFLIPWTWLDGSPNELRKQ---GFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDG 226

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L+ +T   A  +  + M   + +LNV+ A+A+A +
Sbjct: 227 LQNETINEADYVVRIPMANGVDSLNVAAASAIAFW 261


>gi|242280259|ref|YP_002992388.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
           2638]
 gi|242123153|gb|ACS80849.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
           2638]
          Length = 196

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R     +++D+V DPHN+ AILRS  AF   GI     Y+ S+   LAK +S + +  
Sbjct: 18  AKRQKDFTLIIDNVWDPHNVSAILRSCDAFGIYGIHLY--YTVSQWPELAKKSSASGKK- 74

Query: 188 PYIRISNLTDALQ---KMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            ++  +  TD ++    +   G+Q +    S++ +PL     +   A+IL  E  G  P+
Sbjct: 75  -WVERTKHTDPVKMVGGLRDQGYQVLRTGFSETARPLMDFDLSKPSAVILSNEHSGTAPE 133

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E      ++ M G+I++ NVS AAA+ LY
Sbjct: 134 LAELVPDEVYIPMQGMIQSFNVSVAAALILY 164


>gi|315652372|ref|ZP_07905361.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485346|gb|EFU75739.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 251

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 9/180 (5%)

Query: 111 HQGL-----ALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+     A E A +      A +N +   + +LD + DPHN+GAI+R+A      G+I
Sbjct: 67  HQGVIAIVAAYEYASVEDILEKARQNDEPPFVFILDGIEDPHNLGAIIRTANLCGAHGVI 126

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +A +A++++GA+ + P  +++N+   ++++   G   +      +K    +
Sbjct: 127 IPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMKELKDAGMWFVCADMGGEKMYNID 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
           +    I LI+G EG G+    ++    +A + M G I +LN S A  V  Y I +   AK
Sbjct: 187 LTG-SIGLIIGNEGDGVSESVKKNCDFIASIPMKGNIDSLNASVACGVLAYEIVRQRIAK 245


>gi|148989973|ref|ZP_01821248.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924633|gb|EDK75719.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP6-BS73]
          Length = 246

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 6/143 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + L+ V DP N+G I+R+A A    G+I + + +   S    +S  G+  H+P  R+++
Sbjct: 104 FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTS 163

Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSM 251
             L D  +K+      T  LS DS    E   I+N    L++G EG+G+ P   E+A  +
Sbjct: 164 QALLDETKKVAIPVLATT-LSKDSVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQL 220

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ M G  ++LNV+ AA + ++
Sbjct: 221 VHISMKGQAESLNVAVAAGILIF 243


>gi|145354481|ref|XP_001421512.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581749|gb|ABO99805.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 318

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 17/178 (9%)

Query: 111 HQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+ L+   L  PTL      D      + + LD + DP N+GA LRSA     DG++ 
Sbjct: 134 HQGVLLDAEALEIPTLEDLPKWDGRGEPPVWLALDEIVDPQNLGAALRSAHFLGVDGVVC 193

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             + S   +A ++K+++GA+E     +   +   L K    G+  +G ++D++    +++
Sbjct: 194 CAKNSAPFNATVSKASAGAMEAQVVHQTGVMHRFLAKARDEGWDVVGAAADARA---EDV 250

Query: 225 KNDKI----ALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALY 274
            +  +     L++G EG GLR   +     +  +         + +LNVS AA + ++
Sbjct: 251 SDFSVRAPTILVMGNEGSGLRTNVRRACNRLIEIPRSASSAAGVDSLNVSVAAGILIH 308


>gi|198435468|ref|XP_002131824.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Ciona intestinalis]
          Length = 326

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 128/306 (41%), Gaps = 57/306 (18%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRH-------TSQPENLFLYGVHTVSAALNNPSRKI 68
           KDS   K+ +  R  K   + N K+RH       TS   N FLYG    + AL +  R I
Sbjct: 24  KDSKPIKISKQKR--KTNLNHNTKARHQRFDKIETSDFGNEFLYGRSVCNLALLSSRRPI 81

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV-------------HQGLA 115
           F++           W+   P    V+T   +  ++ +  E V             HQG+ 
Sbjct: 82  FKMFINSK------WEVQEPEDPRVQTSLKEAEERNIPIEFVSVSDLFEITQGFPHQGIC 135

Query: 116 LETA--PLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           LE    P++  T D +            + ++L  + DP N+G ILR+        +I T
Sbjct: 136 LEVGQLPVIPLTQDTITSLIHHKLEQCPVWVLLYDIIDPMNVGNILRTCHFLGVHAVIMT 195

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKP- 219
            + +P  S+   K++SGA E +    +   T  +Q M    ++ +G       +++  P 
Sbjct: 196 PQCAPLSSSA-CKASSGATEIMQIYSVRKPTQFIQDMSEKNWEILGTDIFREDNNTHCPV 254

Query: 220 ---LEQEIKNDKIALILGAEGKGLRPKTQETATSM-------AHLHMPGI-IKALNVSNA 268
              +E ++    + LILG+EG G+    +E  T +        +   P + +  LNVS A
Sbjct: 255 LDVVEHKVTKPSL-LILGSEGSGIPSDVKEICTKLLTIKPLKTNTENPQLSVPCLNVSAA 313

Query: 269 AAVALY 274
            A+ L+
Sbjct: 314 TAIILH 319


>gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62389715|ref|YP_225117.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|145294994|ref|YP_001137815.1| hypothetical protein cgR_0939 [Corynebacterium glutamicum R]
 gi|21323591|dbj|BAB98218.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
 gi|41325050|emb|CAF19531.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
 gi|140844914|dbj|BAF53913.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 276

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 10/199 (5%)

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNSQLLMVLDHV 141
           DA+L    PV  V  + + ++ G + +H+GL L TA     +     + N++ ++VL+ V
Sbjct: 73  DASLVEGIPVYEVSRELLAEVAGFD-MHRGL-LATADRTEEASVAQVLENARTVVVLEGV 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTD 197
            D  NIG++ R+A     D I+     +      + + + G +  +P+  +    +    
Sbjct: 131 GDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPFAHLEGTYTTWQR 190

Query: 198 ALQKMHSWGFQTIGLSSDSKKP-LEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLH 255
           +L+++   GF  + L+ D +   LE  +   DK+AL++GAEG GL           A + 
Sbjct: 191 SLEQLKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVGAEGPGLTEHAMRATDVRARIP 250

Query: 256 MPGIIKALNVSNAAAVALY 274
           M     +LN++ +AA+A Y
Sbjct: 251 MAPGTDSLNLATSAAIAFY 269


>gi|329961963|ref|ZP_08299974.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328530611|gb|EGF57469.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 282

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 85/155 (54%), Gaps = 7/155 (4%)

Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           P+++ V R ++ ++V+D V D  NIGAI RSA A   D ++ T+      +    + + G
Sbjct: 110 PSVEEVCREARRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMG 169

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKG 239
           ++  +P+   + L  +L  ++ +GF+T  ++ SD    ++  +     K+A+++G EG G
Sbjct: 170 SVFLLPW---TWLDGSLSGLNKYGFRTAAMALSDHSISIDDPVLTAEPKLAIVMGTEGDG 226

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L  +T   A  +  + M   + +LNV+ A+AVA +
Sbjct: 227 LPHETITEADYVVRIPMSHGVDSLNVAAASAVAFW 261


>gi|241743103|ref|XP_002414182.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215508036|gb|EEC17490.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 156

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 14/155 (9%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            V N +L +++D + DP N GA+LRS+  F    + TT+  S   S V++K++SGALE +
Sbjct: 1   GVLNDRLWVLMDRIQDPMNFGAVLRSSYYFGVQKVFTTRTDSCRLSPVVSKASSGALEVM 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKND----------KIALILGAE 236
               + +  + LQ + S G+  +G +      P E   ++D             LI+G E
Sbjct: 61  DLYSLQSPAEFLQALKSKGWWVVGTAGVKQDGPFEAGPRSDLSWVLPPTDKPAILIVGNE 120

Query: 237 GKGLRPK---TQETATSMAHLHMPGIIKALNVSNA 268
            +G+ P+     ++  S++      +I +LNVS A
Sbjct: 121 NQGMHPELGAVCDSVLSISPAASSDLIGSLNVSVA 155


>gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72]
 gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72]
          Length = 263

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VLD V DP N+G ILR+A A   + ++ T   +   S    ++  GA  H   +RI  
Sbjct: 116 LVVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFH---LRIHE 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            TD    + ++    +  + D++ K L +      +A + GAEG+GL    +  AT    
Sbjct: 173 CTDLAGLLATYPGAVLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKALATGTVL 232

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M   I++LNV+ AAAV L+
Sbjct: 233 IPMAAGIESLNVAAAAAVCLF 253


>gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 265

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGKVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|168487111|ref|ZP_02711619.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569960|gb|EDT90488.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC1087-00]
          Length = 246

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 6/143 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + L+ V DP N+G I+R+A A    G+I + + +   S    +S  G+  H+P  R+++
Sbjct: 104 FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTS 163

Query: 195 --LTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSM 251
             L D  +K+      T  LS DS    E   I+N    L++G EG+G+ P   E+A  +
Sbjct: 164 QALLDETKKVAIPVLATT-LSKDSVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQL 220

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ M G  ++LNV+ AA + ++
Sbjct: 221 VHISMKGQAESLNVAVAAGILIF 243


>gi|124023679|ref|YP_001017986.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963965|gb|ABM78721.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 275

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 16/162 (9%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           AV  ++ ++ LD + DP N+G +LR+A+A   + +       P    VL ++++GA+  +
Sbjct: 104 AVNQAKFVLALDRLQDPGNLGTLLRTALAAEVEAVWLASGADPLSPKVL-RASAGAILQL 162

Query: 188 PYIR--------ISNLTDALQKMHSWGFQTIGL------SSDSKKPLEQEIKNDKIALIL 233
           P+ R        +  L + L+   S G Q +        ++ S  P  Q        L+L
Sbjct: 163 PHERFGSSGQEAVEQLAEQLECAASRGLQVVATMVPASSAAHSCLPYWQLDWRKPTVLVL 222

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           G EG GL P+ QE  T    L     +++LNV+ A AV L +
Sbjct: 223 GNEGSGLHPRLQECCTDCVTLPHSAAVESLNVA-AVAVPLLL 263


>gi|324008438|gb|EGB77657.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 57-2]
          Length = 345

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +   + K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLSAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|290956646|ref|YP_003487828.1| rRNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260646172|emb|CBG69265.1| putative rRNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 276

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           VR+  L +V D    P NIG+I+RSA AF   G+I T   +        ++++G+   +P
Sbjct: 113 VRDDFLGLVFDRPTQPGNIGSIVRSADAFGASGLIVTGHAADPYDPKSVRASTGSFFAVP 172

Query: 189 YIRISN---LTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            +R  +   + + L+K  + G     +G   D    + +      + L++G E  GL   
Sbjct: 173 VVRSQSHHEVMEWLEKERAQGRPVAVVGTDEDGDAEVSEFDLTQPVLLLIGNETAGLSSA 232

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +E    +  + M G   +LN SNAA+V LY
Sbjct: 233 WRELCDQVISIPMTGSASSLNASNAASVVLY 263


>gi|156843950|ref|XP_001645040.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115695|gb|EDO17182.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 398

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 136/349 (38%), Gaps = 92/349 (26%)

Query: 10  EKIFSLKDSH-YAKLRRNHRDYKK----------MQSFNQKSRHTSQPENL--------F 50
           +  F  K +H +A+ +   R Y+K           QSF  + R  + P           +
Sbjct: 52  DDFFRRKYAHVHARQKEGRRSYEKHSAKEETQPPRQSFFDRPRRNANPSRYLQANPLLEY 111

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IVG 106
           +YG ++V AAL +  R+ F  L    +L       ++ +    ++V     DK    ++ 
Sbjct: 112 VYGTNSVLAALQSNKREYFTKLYYHGSLQ-----PDIENLSKSRSVELVKTDKHNLNLLT 166

Query: 107 KEAVHQGLALETAPLL---------------------------SPTLDAVRNSQ----LL 135
           K+AVH  + LET PL                            + ++  + N      L 
Sbjct: 167 KDAVHNNVVLETKPLKPIEINNLETVNTEDCTFQITEQSLIKKTKSIGYISNENKKFPLG 226

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V DPHN+GAI+RSA     D ++ +++     S  + K++SG++E +P   +   
Sbjct: 227 VYLDEVMDPHNVGAIIRSAYFLGADFVVMSRKNCAPLSGTVNKTSSGSMELLPIYYVDKP 286

Query: 196 TDALQKMHS---WGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGK 238
               QK      W F +  ++ D      + IKN                + L++G E  
Sbjct: 287 LTFFQKSSEEGGWSFISSCITDDIISKDNKFIKNKMLSLEDLSGLCKEFPVVLVVGNENT 346

Query: 239 GLRPKTQETATSMAHLHMP--------------GIIKALNVSNAAAVAL 273
           G+R  T     S  ++ +P                + +LNVS A A+ L
Sbjct: 347 GIR--TNLRMRSDFYVEIPFGRDSESDSNRQAISTVDSLNVSVATALLL 393


>gi|269956236|ref|YP_003326025.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304917|gb|ACZ30467.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 276

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 16/249 (6%)

Query: 29  DYKKMQSFNQKSRHTSQP-ENLFLYGVHTV-SAALNNPSRKIFQLLATKNALARLDWDAN 86
           DY  ++  + K R   +P E L++    TV   AL    R    L+A +   +  D  A+
Sbjct: 19  DYTDLK--DVKLRAVREPAEGLYMAESSTVIRRALAAGHRPRSLLMADRWLESMADVIAD 76

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLD 139
            P   PV     + +++I G   +H+G LA    P L P  + V +++       + VL+
Sbjct: 77  WPG-VPVFVGSEEVLEQITGFH-LHRGALAAMHRPALMPVRELVASARGGAGARRVAVLE 134

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V D  N+GA  RSA A   D ++ T R +        + + G +  +P+ R+      L
Sbjct: 135 DVVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLETWPGGL 194

Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHM 256
           +++   GF  + L+ SD    L++   +  +K+A++LG EG G+     +    +  + M
Sbjct: 195 RELQDDGFVVVALALSDDAVSLDELAADPPEKLAVVLGTEGHGMTAAALDACDVVVKIPM 254

Query: 257 PGIIKALNV 265
            G + +LNV
Sbjct: 255 AGGVDSLNV 263


>gi|229820795|ref|YP_002882321.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566708|gb|ACQ80559.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 267

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 110 VHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           +H+G LA    P L    D +  ++ + VL+ V D  N+GA+ RSA     D ++ T R 
Sbjct: 95  LHRGALAAMHRPPLPAARDLLAGARRVAVLEDVVDHTNVGAMFRSAAGLGVDAVLVTPRC 154

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-- 226
           +        + + G +  +P+ RI      + ++   GF    L+         E+ +  
Sbjct: 155 ADPLYRRSVRVSMGTVFQVPWTRIEEWPAGMDELRGAGFTVAALALADDAVTLDELASSP 214

Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +++AL+LG EG GL P T   A  +  + M G + +LNV
Sbjct: 215 PERLALVLGTEGHGLAPTTVAAADVVVRIPMTGGVDSLNV 254


>gi|118466066|ref|YP_880268.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
 gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
          Length = 432

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 116/251 (46%), Gaps = 10/251 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLP 88
           ++ + S +++    S    +   GV  V   L +  R    LL T+  LA L  D A +P
Sbjct: 165 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLAGVP 223

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147
            P+   +     + ++VG   +++G+      +  P + + +  S+ + VL+ VND  N+
Sbjct: 224 VPYYRTSA--DVMARVVGFH-LNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 280

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A     D +I     +        + + G    +PY R ++    L+ +   GF
Sbjct: 281 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGF 340

Query: 208 QTIGLS-SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + + ++   S   L + +   + D++A+++GAEG GL P     +     + M     +L
Sbjct: 341 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 400

Query: 264 NVSNAAAVALY 274
           NV+ AAA+A Y
Sbjct: 401 NVATAAALAFY 411


>gi|255724784|ref|XP_002547321.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
 gi|240135212|gb|EER34766.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
          Length = 434

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 119/308 (38%), Gaps = 87/308 (28%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105
           +++G H V AAL    R++ +L    N    +   A   + F +  +P    DK    ++
Sbjct: 139 YIFGTHAVKAALTAGKRRVLELYTYNNVDPEITKLAE--NKFGI--LPRMVRDKHALNVL 194

Query: 106 GKEAVHQGLALETAPLLSPTLD------------AVRNSQ-------------------- 133
            K  VH G+ L+T  L  P L              + NS+                    
Sbjct: 195 CKNGVHNGVVLKTRKLDVPYLKELGRAEDGKYTLTIENSEDGTISEESKSVLRDAKKDET 254

Query: 134 -----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L++ LD V DP N+G++LRSA  F  DG+I     +     +  K+++GAL+ I 
Sbjct: 255 EELYPLMLYLDEVTDPQNMGSVLRSAFFFGIDGVILPDHSTAKLGPIAFKASAGALDLID 314

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA------------------ 230
             +  +    +  +   G+  I   S S KP   E+ ND++A                  
Sbjct: 315 LYQTESSLKFIDSVRKNGWHVI---STSGKP--DEVSNDELADKHPKTISQLASKFIDLE 369

Query: 231 ------------LILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALY 274
                       L++G+EG+G+R   +  +  +  +        I+ +LNV  A  V   
Sbjct: 370 DLQIILRKSPVMLVIGSEGEGVRTNVKLRSDYLVGIPKYRSDDVIVDSLNVGVATGV--- 426

Query: 275 ITQNHFAK 282
           I QN   K
Sbjct: 427 ILQNCIGK 434


>gi|223041927|ref|ZP_03612112.1| predicted rRNA methyltransferase [Actinobacillus minor 202]
 gi|223017281|gb|EEF15708.1| predicted rRNA methyltransferase [Actinobacillus minor 202]
          Length = 334

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 11/198 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101
           ++ E + +YG ++  A        I +L AT     +L D  + L  H      V  + +
Sbjct: 93  NRAEEMRVYGENSCLAVFQQRPESIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVSREEM 152

Query: 102 DKIVGKEAVHQG---LALETAPLLS--PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +K+ G E  H G   L ++ +P+ S    L   R    L++LD+VN+  N+G ++R+   
Sbjct: 153 EKVTGTE--HHGDVCLLVKKSPVFSLEGYLQITRARDCLVLLDNVNNAQNVGGVIRTCAF 210

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           +   GIIT      + SA  A+ A G LE +  +   +   ALQ++ + G+Q I L+   
Sbjct: 211 YGVKGIITESSDRLNSSAA-ARVAEGGLEFVHALETKHKQIALQQLRNAGYQIIHLTRQK 269

Query: 217 KKPLEQEIK-NDKIALIL 233
           + P   +I   +K+  +L
Sbjct: 270 QVPTLTKIALAEKVVFVL 287


>gi|146302323|ref|YP_001196914.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146156741|gb|ABQ07595.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 165

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 3/142 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V DH+    NIG++ R + AF  + II   +  P     + K++     H+P+  I   
Sbjct: 19  LVCDHIYFQQNIGSLFRISEAFGVENIIFLGKDIPLTPRKINKTSRSTHLHVPHQIIEET 78

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMA 252
           T+    +    F+ I L  + + KPL++ +  K+ K AL++G+E  G+  +  + +  + 
Sbjct: 79  TELTAYLQENNFEIIALEITSNSKPLKEVLIPKDKKTALLIGSEIAGISEELLKISHQIV 138

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
           H++M G   ++NV  AA++ALY
Sbjct: 139 HINMFGKNSSMNVVQAASIALY 160


>gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
 gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
          Length = 243

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 79/146 (54%), Gaps = 13/146 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193
           ++ LD+V DP N+G I+R+A +F+ D +++   +   +   + +S+ GAL  +  +  + 
Sbjct: 98  VVFLDNVQDPGNVGTIIRAAKSFNFDTVVSNVNFYNDK---IVRSSQGALFTVNLVNYAY 154

Query: 194 -NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATS 250
            NL   L+K    GF+    S S +  P+ +   +N+KI +I G EG G      ET+  
Sbjct: 155 DNLHSVLKKYKQNGFKIYCTSLSKNSVPINKISFENEKIVIIFGNEGSG----ASETSIK 210

Query: 251 MAH--LHMPGIIKALNVSNAAAVALY 274
           +A   +++P   ++LNV+  A + LY
Sbjct: 211 IADKLVYVPIDFESLNVAVCAGIVLY 236


>gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
 gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
          Length = 271

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DP N G I+R+A A   DG+I TK      S    ++  G+L H+P +   
Sbjct: 122 LLVVLDGVQDPGNAGTIIRTADAVGADGVILTKGSVDVFSDKTVRATMGSLFHLPVVTDV 181

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252
           +  +      + G Q +  + D +      +   K +LI  G EG G+  +    A  + 
Sbjct: 182 SAEEVATFAQAAGCQLLATALDEQAKPHFAVDFGKGSLIAFGNEGGGVSEELLAAAEKV- 240

Query: 253 HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           ++ M G  ++LNV  ++AV LY  + Q HFA
Sbjct: 241 YIPMYGEAESLNVGVSSAVVLYEAVRQRHFA 271


>gi|121601762|ref|YP_989293.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120613939|gb|ABM44540.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 271

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 10/193 (5%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           +  VP + +D I G   VH+G+      +  P L   L  +    L+ VL  +++  N+G
Sbjct: 79  IYCVPQKIMDDIAGFH-VHRGMLGIGERKALPSLQEFLQDLPERALVPVLCGISNNENMG 137

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A AF+  GII  K         + +S+ GA   IPY + +++   ++ +    F 
Sbjct: 138 AIFRNAAAFASYGIIVDKTSCDPLDRTVIRSSVGATLRIPYTQGNDIESIIKTLSDANFH 197

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
              LS  + + L++       ALILG EG  L P      + +  + M     +LN++ A
Sbjct: 198 LYALSPSAPRYLKEAKTMKHTALILGTEGDSL-PTHVLQKSEILRIPMAYGFDSLNIATA 256

Query: 269 AAVALYITQNHFA 281
           + +AL     HFA
Sbjct: 257 SGLAL----AHFA 265


>gi|312865883|ref|ZP_07726104.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
 gi|311098287|gb|EFQ56510.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
          Length = 252

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 96/195 (49%), Gaps = 7/195 (3%)

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           D+   LP+   V  V P+ + K +      QG+  E     S   +  +   L  VL+ +
Sbjct: 60  DFLERLPNQEKVVVVTPEVL-KELSDSPSSQGIVAEVQMDQSSLPETWQGPYL--VLEDI 116

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A A +   +  + + +   ++   +S  G+  H+P  R  ++ D L  
Sbjct: 117 QDPGNLGTMIRTADAAAYQAVFISDKSADIYNSKTLRSMQGSHFHLPIYR-GSMADFLAS 175

Query: 202 MHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
               G + +   L+ DS    + E + +  AL++G EG+G+  +T + A  + H+ MPG 
Sbjct: 176 FKQAGVRILATTLAEDSMDYRKIE-RPESFALVMGNEGQGISEQTAKKADDLLHIDMPGQ 234

Query: 260 IKALNVSNAAAVALY 274
            ++LNV+ AA + ++
Sbjct: 235 AESLNVAVAAGIMMF 249


>gi|194445716|ref|YP_002041915.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404379|gb|ACF64601.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 345

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +KI L+LG E   L    +E    
Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKIVLVLGREYDYLPEAAREPDDL 313

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
 gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
 gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
 gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
          Length = 254

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +++  + ++ D++ DP N+G I+R+A AF    I T        +  + +++ G++ HIP
Sbjct: 102 IKDKGIYIIADNIQDPGNLGTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHIP 161

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            I  +  +  L K+   G +       ++K + +   +DK+A +LG E KG+     +  
Sbjct: 162 VIVTA--SQILLKLKQRGIKVFATHLKARKLVHECNISDKVAFVLGNEAKGV--SVVDLV 217

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + M G  ++LNVS AA + LY +Q
Sbjct: 218 DDFVKIPMTGEAESLNVSIAAGIFLYESQ 246


>gi|170759752|ref|YP_001788451.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406741|gb|ACA55152.1| RNA methyltransferase, TrmH family [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 259

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ ++ +Q ++  + G      AL  N+   K+F    + N L  L    N+ +      
Sbjct: 17  REKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    + K +G     QG+           LD ++N   ++V D V DP N+G I+R+A 
Sbjct: 77  VNYSVL-KSIGNTENPQGIVSVINYFKREKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+ITTK      +    +S  G++ +IP I   NL + ++ +   GF+ +  S D
Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKLLQKKGFKLLVSSLD 192

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          D I + +G EG G+       +     + MPG  ++LNV+ A ++  +
Sbjct: 193 TNSNFYDVNMKDNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251


>gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 289

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 10/251 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLP 88
           ++ + S +++    S    +   GV  V   L +  R    LL T+  LA L  D A +P
Sbjct: 22  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLAGVP 80

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147
            P+         + ++VG   +++G+      +  P + + +  S+ + VL+ VND  N+
Sbjct: 81  VPY--YRTSADVMARVVGFH-LNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENL 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A     D +I     +        + + G    +PY R ++    L+ +   GF
Sbjct: 138 GAIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKENGF 197

Query: 208 QTIGLS-SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + + ++   S   L + +   + D++A+++GAEG GL P     +     + M     +L
Sbjct: 198 RLLAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSL 257

Query: 264 NVSNAAAVALY 274
           NV+ AAA+A Y
Sbjct: 258 NVATAAALAFY 268


>gi|284053061|ref|ZP_06383271.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str.
           Paraca]
 gi|291572137|dbj|BAI94409.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 259

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 10/153 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYI 190
           + L +VL+ V DP N+G ++R+A A   +G+ +++    P+   VL  SA GA   +P  
Sbjct: 108 TSLGLVLETVQDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASA-GAWFEVPIA 166

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             S+L   L  +   G Q +   +D+     +       A++LG EG GL P      TS
Sbjct: 167 VHSDLITQLSDIQKQGIQIVATRADASLSYWEIDLRPPTAIVLGNEGSGLSPDL----TS 222

Query: 251 MA--HLHMP--GIIKALNVSNAAAVALYITQNH 279
           +A  H+ +P  G +++LNV+  AA+ LY  Q  
Sbjct: 223 LADYHIRVPLLGNVESLNVAICAALILYEAQRQ 255


>gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
          Length = 269

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 2/154 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           LS  L    N  LLM+L+ + DP N+G ILR+       G+I ++      +  + +S  
Sbjct: 108 LSEILSGEENP-LLMILEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTM 166

Query: 182 GALEHIPYIRISNL-TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           G++  +P I ++++  + L  +   G  T       +   ++E      A ++G EG GL
Sbjct: 167 GSVYRMPIIYVNSIEEEVLPLLKEKGITTYAAHLKGRNDYDEECYTKGTAFLIGNEGNGL 226

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  E+A ++  + M G +++LN + A+ + +Y
Sbjct: 227 TEQLTESADTLIKIPMQGKVESLNAAMASGILMY 260


>gi|313123601|ref|YP_004033860.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280164|gb|ADQ60883.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 291

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194
           VL+ V +P N+GAI RSA A   DG++ T   S        + + G +  +P+  +    
Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDQKL 200

Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +  +   GF+T  +     + D   P+ +E   D++A+ILG+EG GL P+T   +
Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPVLKE--ADRLAVILGSEGPGLLPQTIAES 258

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   + +LNV+ A+A+A +
Sbjct: 259 DYTIKIPMAEGVDSLNVAAASALAFW 284


>gi|254571825|ref|XP_002493022.1| Ribose methyltransferase [Pichia pastoris GS115]
 gi|238032820|emb|CAY70843.1| Ribose methyltransferase [Pichia pastoris GS115]
          Length = 397

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 15/155 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + +D V+DPHN+GAI+RS+     D +   ++     ++V +KS++G +E +P   + 
Sbjct: 238 LGVYIDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVV 297

Query: 194 NLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIA---------LILGAEGKGLRPK 243
                L+  +  G+ T+  +SS  KK   +E+ +++++         LI+G+EG G+R  
Sbjct: 298 KPLQFLEAANENGWATVSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKS 357

Query: 244 TQETATSMAHL-----HMPGIIKALNVSNAAAVAL 273
             + ++ +  L     ++   + +LNVS A AV L
Sbjct: 358 LLDRSSHLVSLKSQRKNLDSSVDSLNVSVATAVLL 392


>gi|188533075|ref|YP_001906872.1| putative methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188028117|emb|CAO95974.1| Predicted tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 344

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 94/242 (38%), Gaps = 14/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTID 102
           E   +YG H   A   +    I +    ++   R    L W A     +   TV    + 
Sbjct: 106 EETRVYGEHACQALFQSRPESIVRAWFVQSVTPRFRDALKWMAANRKAY--HTVDDAELQ 163

Query: 103 KIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           K  G E  H G+           +S  L        ++ L+ + +PHN+G I+RS   F 
Sbjct: 164 KASGTEH-HGGVCFLIKKRVGMPVSEWLAQSGQKDCVLALEDIGNPHNLGGIMRSCAHFG 222

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS    
Sbjct: 223 AKGLLVDD-ASLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRKAGYTIVTTSSHQGI 281

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YIT 276
           PL +     K+ L+LG E  GL   T E       +   G +++LNVS A  V L  +  
Sbjct: 282 PLAKAELPAKMVLVLGQERDGLSDSTLEQGDLSVSISGTGNVESLNVSVATGVLLAEWWR 341

Query: 277 QN 278
           QN
Sbjct: 342 QN 343


>gi|261822727|ref|YP_003260833.1| methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261606740|gb|ACX89226.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
          Length = 383

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+G I+RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 236 CVLALEDVGNPHNLGGIMRSCAHFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINAD 294

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L +    G+  +  SS     L Q     K  ++LG EG GL     +       
Sbjct: 295 DFLSVLAEFRHAGYTIVTTSSHKGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 354

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           +   G +++LN+S A  + L  +  QN 
Sbjct: 355 IGGTGKVESLNISVATGILLSEWWRQNQ 382


>gi|269217371|ref|ZP_06161225.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
 gi|269129508|gb|EEZ60593.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
          Length = 332

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++ + +L+ + D  N+GAI RSA A   D ++              + + G +  +P+ 
Sbjct: 177 GARRIAMLEGIVDHTNVGAIFRSAAALGVDAVLVAPTCCDPLYRRSVRVSMGTVFQVPWT 236

Query: 191 RISNLTDA-------LQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGL 240
           RI N  DA       L+++H  G+ T  ++ SD   PL+       +++AL+ G EG GL
Sbjct: 237 RIGN--DAHDWPRAGLEELHRLGYATAAMALSDDSIPLDDARLAACERLALVFGTEGDGL 294

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +T E       + M   + +LNV+ A+AVA +
Sbjct: 295 TARTIEGCDYTVRIPMAHHVDSLNVAAASAVAFW 328


>gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
 gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
          Length = 254

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 117/252 (46%), Gaps = 14/252 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +++KK+ +     +   +   LFL  G H V  AL + +  + +L+  +       W+A 
Sbjct: 13  KEWKKLLT-----KKGQEKMGLFLIEGFHLVEEALKSHA-PLVELIVDEKKEIPPSWNAG 66

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV T+  + + K +      QG+A          +D  + + LL  +D V DP N
Sbjct: 67  ---HLPV-TIVTEEVMKAISDTETPQGIAAVCEQFSYGDIDWTQANVLL--IDAVQDPGN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG ++R+A A   D +I  +  +   +  + ++  G+L H+P IR  NL + ++++    
Sbjct: 121 IGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPIIR-GNLREWIERLCEKN 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G + ++ +           AL++G EG G+  K  +  T   ++ + G  ++LNV+
Sbjct: 180 VAIYGTALENGEDYRHIKPARPFALLVGNEGSGVHKKLLQMTTKNLYIPIYGQAESLNVA 239

Query: 267 NAAAVALYITQN 278
            AA + LY  Q+
Sbjct: 240 VAAGILLYHLQD 251


>gi|310658445|ref|YP_003936166.1| RNA methyltransferase, trmh family [Clostridium sticklandii DSM
           519]
 gi|308825223|emb|CBH21261.1| RNA methyltransferase, TrmH family [Clostridium sticklandii]
          Length = 261

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 114/248 (45%), Gaps = 9/248 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           YK   S  Q S++  + +     G+  V  A+ NP + I+ +   ++ +    +   + +
Sbjct: 12  YKLAMSLMQ-SKYRKKNQMFLAEGLRNVELAIENP-KTIYLIFIQEDRINEPRYSNIIKN 69

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                 V P  + + +      QG+ +      S  +D +  +  +++LD + DP N+G 
Sbjct: 70  TGDKSFVVPSKLMETISDTVTSQGI-VAICNFESFMIDDIDFNNDILILDKIQDPGNLGT 128

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A A     +I TK  +   S+ + +SA G+L H+  + I +  ++L  +    ++ 
Sbjct: 129 ILRTADAAGISTVICTKGTTDIYSSKVVRSAMGSLMHLKILFIDDY-ESLNILKKNDYKI 187

Query: 210 IGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           I  SS  +  L+  + +    K+A++LG E  G+  K    +     + + G  ++LNV 
Sbjct: 188 I--SSSLENALDYNVLSTIQSKVAIVLGNEANGIDDKLLNLSDIKVKIPLYGAAESLNVG 245

Query: 267 NAAAVALY 274
            A  + +Y
Sbjct: 246 IAGGILMY 253


>gi|296118312|ref|ZP_06836893.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968870|gb|EFG82114.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 266

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 12/195 (6%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           P+  V   T+ ++VG + +H+GL   A   APL     +A+ +++ ++VL+ V D  NIG
Sbjct: 69  PMYEVDRATLAEVVGFD-MHRGLVAAADRVAPL--EVSEAISDAKTVVVLEGVGDHENIG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK----MHS 204
           ++ R+A     D ++     +        + + G +  +P+ R        Q+    +  
Sbjct: 126 SLFRNAAGMDVDAVLLGAGAADPLYRRSVRVSMGHVLRLPFARFDGGFTTWQRNLDLLAD 185

Query: 205 WGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            GF  + L+ D++     E    +DK+AL++GAEG GL           A + M     +
Sbjct: 186 AGFHLVSLTPDNEAVHLAEALAGHDKVALMVGAEGPGLTEHAMRATHVRARIPMAEGTDS 245

Query: 263 LNVSNAAAVALYITQ 277
            NV+ AAA+A Y  Q
Sbjct: 246 FNVATAAAIAFYERQ 260


>gi|301320680|gb|ADK69323.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 244

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 115/253 (45%), Gaps = 35/253 (13%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVK-------TVPPQT 100
            +YG H V           F+LL     + +  W  D  + + F +K        V    
Sbjct: 5   LIYGKHVV-----------FELLKKHQNMVKEIWVKDLKILNEFDLKKTKIKVNVVSENK 53

Query: 101 IDKIVGKEAVHQGLALETAPL-LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154
           +D+++  +  HQG+  +      +P  + +     +   L+++LD ++  +N GAI+RS 
Sbjct: 54  LDQLLETQTQHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHYSYNFGAIIRSC 113

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIG 211
              + DGII   +     ++ + K++SG+   I   + +NL +A++ + +   W + T  
Sbjct: 114 SLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYAT-N 172

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAA 269
           L+ +S    + +  N K A+I+G E KG+      T  S  ++++P    I + N S A 
Sbjct: 173 LNQNSTDMTKIDFAN-KTAVIIGNEQKGVSELL--TKNSDFNIYVPSNKNIDSFNASVAC 229

Query: 270 AVALYITQNHFAK 282
           ++  +   N+  K
Sbjct: 230 SIICFWIANYLNK 242


>gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 262

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +  D V DP N+G I+R+A A   +GI+ +K      +    +S  G+L ++P   
Sbjct: 110 GDFYLFCDKVQDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYY 169

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    ++ +   GF  I  S +S K   +E    KI L +G EG G+  +  + A   
Sbjct: 170 DDDEFSLIKSLKKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRR 229

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + MPG  ++LNV+ A ++ +Y
Sbjct: 230 VKIPMPGGAESLNVAIATSIIIY 252


>gi|283786196|ref|YP_003366061.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282949650|emb|CBG89269.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 345

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 129 VRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           V N+Q    ++ L+++ +PHN+G ++RS   F   G++  +  +  ES    ++A G  E
Sbjct: 190 VGNAQAQDCVLALENIANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAE 248

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+  I   ++ + L      G+  +  S D  KPL      +K+ L+LG E  GL    +
Sbjct: 249 HVQPITGDSIVNVLDDFRQAGYTVVTTSGDRGKPLFATALPEKMVLVLGQEADGLPDAAR 308

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +       +   G +++LNVS    + L  +  QN
Sbjct: 309 DPDDLCVKIDGTGNVESLNVSVVTGILLAEWWRQN 343


>gi|168238343|ref|ZP_02663401.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735064|ref|YP_002115660.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|204929676|ref|ZP_03220750.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194710566|gb|ACF89787.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288803|gb|EDY28176.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204321395|gb|EDZ06595.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322613365|gb|EFY10307.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620431|gb|EFY17296.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625101|gb|EFY21930.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629455|gb|EFY26231.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633842|gb|EFY30581.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635448|gb|EFY32159.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639876|gb|EFY36555.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644238|gb|EFY40782.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649930|gb|EFY46350.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654887|gb|EFY51204.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658185|gb|EFY54451.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661743|gb|EFY57961.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669724|gb|EFY65870.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673269|gb|EFY69374.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674942|gb|EFY71029.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682965|gb|EFY78983.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685626|gb|EFY81621.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323191946|gb|EFZ77184.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200421|gb|EFZ85502.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201320|gb|EFZ86387.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208391|gb|EFZ93331.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211534|gb|EFZ96372.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215965|gb|EGA00697.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221746|gb|EGA06154.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225646|gb|EGA09873.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229364|gb|EGA13488.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235321|gb|EGA19405.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237493|gb|EGA21556.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245248|gb|EGA29249.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246473|gb|EGA30454.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253996|gb|EGA37818.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259046|gb|EGA42694.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261969|gb|EGA45534.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267752|gb|EGA51233.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269689|gb|EGA53141.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 345

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDFLPEAAREPGDL 313

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|154147987|ref|YP_001405828.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381]
 gi|153803996|gb|ABS51003.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter hominis
           ATCC BAA-381]
          Length = 226

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG   +        +  ++ ++ L++L +++D  NIGAI+RSA A   D I    +   
Sbjct: 61  HQGFLAKVDEFEFCEIADLKEAKFLVILWNLSDIGNIGAIVRSAYALGADAICVVSKNLQ 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI- 229
            E  +  +++SGA   I   RI +    + ++   GFQ    + D      ++IK  KI 
Sbjct: 121 IEGVI--RASSGAAYEIKIARIDDGAGLINELKQIGFQIFAATMDG-----EDIKTAKIG 173

Query: 230 ---ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              ALILG+EG+G+  K          + M     +LNVS A A+
Sbjct: 174 AKTALILGSEGEGIPQKIVTKCDHSVSIKMKHGWDSLNVSAAFAI 218


>gi|33862607|ref|NP_894167.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634523|emb|CAE20509.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
          Length = 275

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 16/162 (9%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           AV  ++ ++ LD + DP N+G +LR+A+A   + +       P    VL ++++GA+  +
Sbjct: 104 AVNQAKFVLALDRLQDPGNLGTLLRTALAAEVEAVWLASGADPLSPKVL-RASAGAILQL 162

Query: 188 PYIR--------ISNLTDALQKMHSWGFQTIGL------SSDSKKPLEQEIKNDKIALIL 233
           PY R        +  L + L+   S G Q +        ++ S  P  Q        L+L
Sbjct: 163 PYQRFGSSGQEAVEQLAEQLEWAASHGLQVVATMVPGSSAAHSCLPYWQLDWRKPTVLVL 222

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           G EG GL P+ Q   T    L     +++LNV+ A AV L +
Sbjct: 223 GNEGSGLHPRLQACCTDCVTLPHSAAVESLNVA-AVAVPLLL 263


>gi|168232176|ref|ZP_02657234.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472133|ref|ZP_03078117.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458497|gb|EDX47336.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333582|gb|EDZ20346.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 345

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPGDL 313

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|50913671|ref|YP_059643.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|50902745|gb|AAT86460.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 245

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 80/143 (55%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           +VL+ V DP N+G I+R+A A   +G+  +++ +   +    +S  G+  H+P  R  + 
Sbjct: 104 LVLEDVQDPGNLGTIIRTADAARFNGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVY 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251
            L   LQ+  +     I  ++ SKK ++ +    ++++AL+LG EG+G+  +    A  +
Sbjct: 164 QLCRELQEYKT----PILATTLSKKSVDYKSLTYHERLALVLGNEGQGISAEMVALADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|238912713|ref|ZP_04656550.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 345

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E +  
Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPSDL 313

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|50122437|ref|YP_051604.1| putative methyltransferase [Pectobacterium atrosepticum SCRI1043]
 gi|49612963|emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 383

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+G I+RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 236 CVLALEDVGNPHNLGGIMRSCAHFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINAD 294

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L +  S G+  +  SS     L +     K  ++LG EG GL     +       
Sbjct: 295 DFLSVLAEFRSAGYTIVTTSSHKGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 354

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           +   G +++LN+S A  + L  +  QN 
Sbjct: 355 IGGTGKVESLNISVATGILLSEWWRQNQ 382


>gi|119357948|ref|YP_912592.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
 gi|119355297|gb|ABL66168.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
          Length = 268

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  +   LL+ LD V DP N+G ILR+A  F  D +I +   +   +A + +S++G+L  
Sbjct: 114 DEKKGRSLLIALDEVQDPGNVGTILRTAAWFGADALICSTGTADRYNAKVVRSSAGSLYA 173

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P+  +  L  AL+++ + G+  I  S D +          K  L++G E  G+    Q 
Sbjct: 174 LPHYTVERLDLALEELAASGYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQN 233

Query: 247 TATSMAHL-HMPG--IIKALNVSNAAAVAL 273
            A  +  + H  G   +++LN S +AA+ +
Sbjct: 234 LAERLVRIPHGGGKSRVESLNASVSAAILM 263


>gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81637729|sp|P94538|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA
 gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis]
 gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++++D V DP N+G ++R+A A   D ++     + + +    +SA G+  HIP +R  N
Sbjct: 106 VLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVR-RN 164

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   + ++ + G +  G +  +  P ++  +++  ALI+G EG G+     E      ++
Sbjct: 165 LPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTDLNLYV 224

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LNV+ AAA+ +Y
Sbjct: 225 PLYGQAESLNVAVAAAILVY 244


>gi|320182094|gb|EFW56998.1| putative methyltransferase [Shigella boydii ATCC 9905]
          Length = 345

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EHI  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHIQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5]
 gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5]
          Length = 248

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 76/140 (54%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++++D V DP N+G ++R+A A   D ++     + + +    +SA G+  HIP +R  N
Sbjct: 106 VLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPVVR-RN 164

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   + ++ + G +  G +  +  P ++  +++  ALI+G EG G+     E      ++
Sbjct: 165 LPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTDLNLYV 224

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LNV+ AAA+ +Y
Sbjct: 225 PLYGQAESLNVAVAAAILVY 244


>gi|308177384|ref|YP_003916790.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744847|emb|CBT75819.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 277

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           LS  L+A   S  + +L+ + D  N+GAI+RSA     D ++ T +         A+ + 
Sbjct: 118 LSQVLEA---SSRVAILEDIADHTNLGAIIRSASGLGVDAVLLTPKCVDPWYRRSARVSM 174

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGK 238
           G +  +P++R+ +  + ++ +   G+Q + +  +D   PL   Q     K+A+ILG EG+
Sbjct: 175 GTVFDLPWVRMLSWPEDIRTLKQHGYQMLAMELTDDAIPLNEVQITAGQKVAMILGNEGR 234

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+  +  E       + M   + +LNV  A+A+A +
Sbjct: 235 GVTAQALEAVDQTVIIPMHREVDSLNVGAASAIAFW 270


>gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
 gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
          Length = 257

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 112/254 (44%), Gaps = 14/254 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  I +L+ +       DW    
Sbjct: 16  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVITELIVSDQTDLPKDWTVTD 69

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +        ++LD + DP N+
Sbjct: 70  VEMYIV----PEAIVKVLRETETTQGV---FAVCEKHEKEIALTDGKFLLLDGLQDPGNL 122

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 123 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKEKNV 181

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G + ++  P  +       ALI+G EG G+R +         ++ + G  ++LNV+ 
Sbjct: 182 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEVLAKCDQNLYIPIYGGAESLNVAV 241

Query: 268 AAAVALYITQNHFA 281
           AA +  Y  Q+  A
Sbjct: 242 AAGILTYYLQSPVA 255


>gi|239627006|ref|ZP_04670037.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517152|gb|EEQ57018.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 287

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 7/197 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     + ++ G       L     P L    D    ++ + VL++V +P NIGA+
Sbjct: 79  IPVYTAEFHVLTQLTGFHLTRGMLCAMYRPPLPGLEDVCGGARRIAVLENVMNPTNIGAV 138

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSWG 206
            RSA A   D ++ T   S        + + G +  IP+     R S     + ++   G
Sbjct: 139 FRSAAALGMDAVLLTAACSNPLYRRAIRVSMGTVFQIPWTILDSRCSWPQPGISRLRGMG 198

Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+T  ++  D    ++    +  DK+A+ILG EG GL  +T         + M   + +L
Sbjct: 199 FKTAAMALGDDSICIDDAGLMAEDKLAVILGTEGDGLSKETIADCDYTVRIPMSHGVDSL 258

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A+AV  +     F
Sbjct: 259 NVAAASAVMFWQIGRAF 275


>gi|300811210|ref|ZP_07091718.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497810|gb|EFK32824.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 291

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194
           VL+ V +P N+GAI RSA A   DG++ T   S        + + G +  +P+  +    
Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDQKL 200

Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +  +   GF+T  +     + D   P+ +E   D++A+ILG+EG GL P+T   +
Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPVLKE--ADRLAVILGSEGPGLLPQTIAES 258

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   + +LNV+ A+A+A +
Sbjct: 259 DYTIKIPMAEGVDSLNVAAASALAFW 284


>gi|283955409|ref|ZP_06372908.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793169|gb|EFC31939.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 227

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 2/161 (1%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG  L+        L+ ++ S  +++L  ++D  NIGAI R+A A     +I       
Sbjct: 61  HQGFLLDIKEGSFANLNEIKKSDFIVMLYGISDVGNIGAIARTAYALGVGALIFIGEKLA 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            E  +  +++SGA   +P +  ++    + ++   GF         K+    +I N K  
Sbjct: 121 MEGVI--RTSSGAALDLPIVISNDALSVINELKQIGFYFYASDGSGKEIHNVKINNGKKV 178

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L+LG+EG GL  K  +       + M     +LNVS A A+
Sbjct: 179 LVLGSEGFGLSSKIAKKCDECVGITMKNNFDSLNVSAAFAI 219


>gi|159903887|ref|YP_001551231.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889063|gb|ABX09277.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 285

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 17/152 (11%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY---- 189
            ++VLD + DP N+G + R+A+A   D +       P    VL +S++GA+  +P+    
Sbjct: 112 FILVLDRLQDPGNVGTLFRTALAADIDALWLALGADPLSQKVL-RSSAGAVLKLPFERLA 170

Query: 190 ----IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKI---ALILGAEGK 238
               I I  L D L+ +   G+Q +  +  + KP + E+    + D I    L+LG EG 
Sbjct: 171 DSEDIAIDGLVDKLRGVSQEGYQVVA-TYVAGKPSDFEVIPYWELDWIKPTVLVLGNEGS 229

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL P+ Q   T    L     +++LNV+ AAA
Sbjct: 230 GLSPRIQACCTHGVTLPHSEAVESLNVAVAAA 261


>gi|328352968|emb|CCA39366.1| RNA methylase [Pichia pastoris CBS 7435]
          Length = 344

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 15/155 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + +D V+DPHN+GAI+RS+     D +   ++     ++V +KS++G +E +P   + 
Sbjct: 185 LGVYIDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVV 244

Query: 194 NLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIA---------LILGAEGKGLRPK 243
                L+  +  G+ T+  +SS  KK   +E+ +++++         LI+G+EG G+R  
Sbjct: 245 KPLQFLEAANENGWATVSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKS 304

Query: 244 TQETATSMAHL-----HMPGIIKALNVSNAAAVAL 273
             + ++ +  L     ++   + +LNVS A AV L
Sbjct: 305 LLDRSSHLVSLKSQRKNLDSSVDSLNVSVATAVLL 339


>gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 254

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++   + ++ D++ DP N+G I+R+A AF    I T        +  + +++ G++ HIP
Sbjct: 102 IKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIP 161

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              I+  +  L K+   G +       ++K + +   +DKIA +LG E KG+     +  
Sbjct: 162 V--IATTSQILLKLKRRGIKVFATHLKAQKLVHECNISDKIAFVLGNEAKGV--SVVDLV 217

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G  ++LNVS AA++ LY +Q  
Sbjct: 218 DDFVKIPMTGEAESLNVSIAASIFLYESQRQ 248


>gi|310793697|gb|EFQ29158.1| SpoU rRNA methylase [Glomerella graminicola M1.001]
          Length = 588

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 120/284 (42%), Gaps = 64/284 (22%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTV-----PPQT 100
           FL+G   V AAL N  RK+++L     + KN     DW         +K         + 
Sbjct: 274 FLFGRSVVKAALKNSKRKLYRLYVYQGSNKNTTKDDDWILASAEKKNIKVTRIYENDQKL 333

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV---------------RNSQ------------ 133
           +DK+  K   H GL +E +PL    L  +               R S+            
Sbjct: 334 LDKM-SKGRPHNGLVIEASPLPQLPLTGLGAESSELRGYPVHVARQSKEESEINGTEGFI 392

Query: 134 ---------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L+++L+ + DP N+GAILR+A       +  T+R S + +  + K+A+GA 
Sbjct: 393 PCRPGSPKPLVLLLNEILDPGNLGAILRTARFLGVSAVAITQRTSSAITPTVLKAAAGAA 452

Query: 185 EHIPYIRISN---LTDALQKMHSWG-----FQTIGLSSDSKKPLEQEIKNDK------IA 230
           E +    + +     DA QK   W        T GL +DS++   + I++ K        
Sbjct: 453 EELRLFSVEDPVAFLDASQKA-GWASYAAVAPTAGLRNDSRQWTPEGIEDAKPLTKEPTI 511

Query: 231 LILGAEGKGLRPKTQETAT---SMAHLHMPGIIKALNVSNAAAV 271
           LILG EG GL    ++ A+   ++  + M   + +LNVS A A+
Sbjct: 512 LILGNEGSGLPYDIRKKASREITIPRMVMSSSVDSLNVSVATAL 555


>gi|239907184|ref|YP_002953925.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239797050|dbj|BAH76039.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 196

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 4/147 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIP 188
           R + L +V+++++DPHN+ AILRS  AF    +     Y+ +    L K +SG A + + 
Sbjct: 20  RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLL--YTDTAFPALGKKSSGSAKKWVE 77

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R  +       +   GF+ +  S +++  PL++     K A+ILG E  G+       
Sbjct: 78  TVRHKDAASLAAALKGQGFRLVATSFTETAVPLQKWDLTTKTAIILGNEHSGVDEDLAPH 137

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                ++ M G++++LNVS AAAV LY
Sbjct: 138 VDGALYIPMMGMVQSLNVSVAAAVILY 164


>gi|159038777|ref|YP_001538030.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157917612|gb|ABV99039.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 307

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 16/254 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAAL--NNPSRKIFQLLATKNALARLD-WD 84
           DY+ +     ++R    P  LF+  G   +  AL    P+R           LA LD  D
Sbjct: 54  DYRALTDVELRTRW-EPPHGLFIAEGELVLRRALRAGYPARSYLVDAKRVEQLADLDTGD 112

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVND 143
           A      PV    P  + ++ G   VH+G+         PT  D +  ++ +++L+ VN+
Sbjct: 113 A------PVYAAAPDVLRRVTGFH-VHRGVLASFRRRRQPTATDLLATARRVVILEDVNN 165

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+I R+      D ++ +   +        + + G +  +PY  +    DAL ++ 
Sbjct: 166 HTNLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYAMLGPWPDALAEVR 225

Query: 204 SWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + GF  + L+ +    P++  +  +  + AL+LGAEG GL  +  E +     + M   +
Sbjct: 226 AAGFTVLALTPAPDAVPIQRLEPGQRSRAALLLGAEGSGLTREAMEASDVRVVIPMRRGV 285

Query: 261 KALNVSNAAAVALY 274
            +LNV+ A AVA +
Sbjct: 286 DSLNVAAATAVACW 299


>gi|327308270|ref|XP_003238826.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
 gi|326459082|gb|EGD84535.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
          Length = 505

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 99/242 (40%), Gaps = 73/242 (30%)

Query: 100 TIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL------------------ 135
           T+DK+ GK   H G+ LE +PL  P      T+ +  NS  L                  
Sbjct: 235 TLDKMTGKRP-HNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQLAAQPEEQAAVNGTDG 293

Query: 136 -------------------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                              ++LD + DP N+GAI RSA  F  D I  + + S   S V+
Sbjct: 294 HIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGADAIAFSSQNSAPISPVV 353

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS----------------DSKKPL 220
            K+A+GA E IP + + +++  +    + G++     +                +S + L
Sbjct: 354 MKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLVNDYTRKIPVINSLEAL 413

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----------IKALNVSNAA 269
             E+      L+LG EG GL+ K +  A S   + +PG            + +LNVS A+
Sbjct: 414 ASELTKAPCVLMLGGEGSGLQQKIKNRADSF--VTIPGAYSANIRDDTAGVSSLNVSVAS 471

Query: 270 AV 271
           A+
Sbjct: 472 AL 473


>gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675454|ref|YP_003867126.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 248

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 23/251 (9%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +D+KK+ +  ++++      N FL  G H V  AL +P   + ++L         D D +
Sbjct: 13  KDWKKLHTKKERTK-----TNTFLIEGEHLVEEALKSPG-TVKEILIKDETKIPSDLDVS 66

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQLLMVLDHVND 143
           +        +       +   E   Q  A+   P   L SP        Q ++++D V D
Sbjct: 67  IQ----CYVLSEDAFSAVTETETPQQIAAVCHMPEEKLASP--------QRVLLIDAVQD 114

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A   D ++     + + +    +SA G+  HIP +R  NL   + ++ 
Sbjct: 115 PGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSAQGSHFHIPVVR-RNLHTYVDELK 173

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G +  G +  +  P     + +  ALI+G EG G+     E      ++ + G  ++L
Sbjct: 174 AEGVKVYGTALQNGAPYRDMSQAEFFALIVGNEGAGVNAALLEKTDLNLYVPLYGQAESL 233

Query: 264 NVSNAAAVALY 274
           NV+ AAA+ +Y
Sbjct: 234 NVAIAAAILVY 244


>gi|194432143|ref|ZP_03064432.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
 gi|194419672|gb|EDX35752.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
 gi|332088093|gb|EGI93218.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 5216-82]
 gi|332089180|gb|EGI94287.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 155-74]
          Length = 345

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EHI  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHIQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 254

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+             A+ + + L+ LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|324113107|gb|EGC07083.1| SpoU rRNA methylase [Escherichia fergusonii B253]
          Length = 345

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +    +K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRLAGYTVVTTSSEQGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|225155853|ref|ZP_03724339.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224803403|gb|EEG21640.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 254

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 19/196 (9%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           + V P  + KI G   +H G  +         APL        +    L++LD + + HN
Sbjct: 53  RCVEPAELAKIAGT--LHHGGVVAVVDEPALRAPLPREMRAWAKAGTPLLLLDRIGNAHN 110

Query: 147 IGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           +GAI R+A  F    II     S   P ESA   + A G LEH+   R+  L     ++ 
Sbjct: 111 VGAIARTAAFFGVAHIIIPAHASAALPGESA--HRIAEGGLEHLTLWRVPTLARFCAELR 168

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKI-----ALILGAEGKGLRPKTQETATSMAHLHMPG 258
             G++ +G ++         +          AL+LG E  GL  +  +  T +  +   G
Sbjct: 169 EAGYEVVGAATRGGALTLPALTGGGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSG 228

Query: 259 IIKALNVSNAAAVALY 274
            I++LNVS AAA+ ++
Sbjct: 229 KIESLNVSAAAAILMF 244


>gi|33861855|ref|NP_893416.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640223|emb|CAE19758.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 246

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 15/151 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191
            ++VLD + DP N+G + R+A+A     I+      P    VL +++SG++ H+P+ R  
Sbjct: 78  FILVLDRIQDPGNMGNLFRTALAAGVSKILLAGGAHPLGQKVL-RASSGSVFHLPFKRFD 136

Query: 192 ------ISNLTDALQKMHSWGFQTIGLSS------DSKKPLEQEIKNDKIALILGAEGKG 239
                 I++L  +L +    GFQ I  SS       S+KP  +   +   ALILG EG G
Sbjct: 137 GGEEEIINSLLSSLDQFSKNGFQIISTSSHNKNLYKSQKPYWEIDWSKPTALILGNEGNG 196

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           +  + QE       +    ++++LNV+  A 
Sbjct: 197 IHKRIQEAFNETITIPHSELVESLNVACVAV 227


>gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 264

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 13/211 (6%)

Query: 75  KNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NS 132
           KN L  L  D A   H + V+      ID  V  + V   +A+ + P     +++V    
Sbjct: 60  KNVLDLLTLDSAQSAHTYIVQDPVFDKIDNTVNGQGV---VAIVSKP--KHNIESVSIED 114

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--- 189
            L + LD V DP N+G I+R+AVA    GI   K      +    +S   AL  IP    
Sbjct: 115 GLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYED 174

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I +S L D + + +   + T   + ++ +P        +  L+LG EG G+ P+     T
Sbjct: 175 ITLSMLHDIVAESNMTTYVT---ALENSEPYHSVNYAKRTMLVLGNEGNGVTPEVMNLCT 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   + M G +++LNVS AAA+ +Y  Q   
Sbjct: 232 NRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262


>gi|256825192|ref|YP_003149152.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256688585|gb|ACV06387.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 269

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 5/178 (2%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           PV    P  ++ + G   +H+G LA    P L    D +  ++ ++V++ V D  N+GAI
Sbjct: 79  PVYVAEPAVVESMTGFH-LHRGALAAMQRPELPAVADLLGGARRVVVVEDVVDHTNVGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RS  A   D ++ T R +        + + G +  +P+ RI      + ++   GF   
Sbjct: 138 FRSVAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPAGMAELQGAGFTVA 197

Query: 211 GLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            L+        Q++  D   ++AL+LG EG GL P+T E A     + M G + +LNV
Sbjct: 198 ALALRDDAVTMQQLAADPPERLALVLGTEGDGLAPQTVEGADLAVRIPMSGGVDSLNV 255


>gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
          Length = 265

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+             A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 262

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 69/143 (48%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +  D V DP N+G I+R+A A   +GI+ +K      +    +S  G+L ++P   
Sbjct: 110 GDFYLFCDKVQDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYY 169

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    ++ +   GF  I  S +S K   +E    KI L +G EG G+  +  + A   
Sbjct: 170 DDDEFSLIKSLKKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRR 229

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + MPG  ++LNV+ A ++ +Y
Sbjct: 230 VKIPMPGGAESLNVAIATSIIIY 252


>gi|169824566|ref|YP_001692177.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|167831371|dbj|BAG08287.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
          Length = 256

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 12/151 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EH 186
           V++ Q+L  L+++NDP N+G I+RSA AF  + I+ +       ++   +SA G+L   +
Sbjct: 106 VKSDQILF-LENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMN 164

Query: 187 IPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPK 243
           I Y  I    + L+K  S GF+     L  +S+  L  EIKN +K  LI+G E  G+  +
Sbjct: 165 ISYENI----NVLEKYKSKGFKIYETSLEKNSRSIL--EIKNKEKHVLIIGNEANGISDE 218

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ A     + M  + ++LN S AA+++++
Sbjct: 219 IKKYADEFLIIPMDNVTESLNASIAASLSMF 249


>gi|32475415|ref|NP_868409.1| rRNA methylase [Rhodopirellula baltica SH 1]
 gi|32445956|emb|CAD78687.1| putative rRNA methylase [Rhodopirellula baltica SH 1]
          Length = 302

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 15/198 (7%)

Query: 90  PFPVKTVPPQTIDKIVGKEAV----HQG-LALETAPLLSPTLDAVRNS---QLLMVLDHV 141
           P    +VP   ID+ +GKE      H+G LA   +P + P L+  R+S    L + L  +
Sbjct: 94  PLIPDSVPVYLIDRELGKELAGYDFHRGVLAHGFSPAIEP-LEKFRDSPQSSLALALVGL 152

Query: 142 NDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +DP N+G++LRSA A    D ++     SP    V+  S +    H  Y R  N    L+
Sbjct: 153 SDPENVGSLLRSAAALGVRDILLGPHTISPMTRRVIRVSMASVFRHRFY-RFDNPVGQLR 211

Query: 201 KMHSWGFQTIG-LSSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            + + G  +I  L  D+  P   L   I++ +  L++G E  GL  +  E AT  + L M
Sbjct: 212 DLANAGIASIATLLDDTAIPLIDLSNAIQSKRRILMVGNEANGLPREIAEAATHRSTLPM 271

Query: 257 PGIIKALNVSNAAAVALY 274
                +LNV  A+A+ LY
Sbjct: 272 RNDTDSLNVGVASAIFLY 289


>gi|291531350|emb|CBK96935.1| rRNA methylases [Eubacterium siraeum 70/3]
          Length = 303

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 22/198 (11%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + +  + G E     L     P      +  +N++ + VL+++ D  N GAI
Sbjct: 106 IPVYTADSKIMSGLTGYELTRGMLCAMERPAPKRAEELCKNARRIAVLENIADVSNTGAI 165

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSA----SGALEHIPYIRISNLTDALQK----- 201
           +RSA A   D ++ T    PS    L + A     G +  IP+  I       Q      
Sbjct: 166 IRSAAALGIDAVLIT----PSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAY 221

Query: 202 MHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           ++S GF+T  ++      S   K L+ E   +++A+ILG+EG GL  KT +       + 
Sbjct: 222 LNSLGFKTAAMALTDNSVSIDDKTLQSE---ERLAIILGSEGYGLSQKTIDGCDYTVKIP 278

Query: 256 MPGIIKALNVSNAAAVAL 273
           M   + +LNV  AAAVA 
Sbjct: 279 MYHGVDSLNVGAAAAVAF 296


>gi|296123594|ref|YP_003631372.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296015934|gb|ADG69173.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 285

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 2/147 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+V  + ++P N+GAI+R A AF   G++  K      S  + + + G +  +      
Sbjct: 139 LLIVCPNCDNPENLGAIIRIASAFRATGLLLGKACCDPFSRRVIRVSMGNIFGLTIRESR 198

Query: 194 NLTDALQKMHS-WGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           +L   LQ++ + +GF+T+G + S+S   L+   +  ++AL+LG E +GL  +  +    +
Sbjct: 199 HLDHDLQRLKTEFGFETMGAILSESAVSLKNVQRPHRLALLLGNEAEGLTTEWMDHCNHL 258

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278
             + MP  + +LNV+ AA + LY   N
Sbjct: 259 VTIPMPPDVDSLNVAVAAGIFLYQLTN 285


>gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
 gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
 gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
 gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
 gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
 gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
          Length = 265

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+             A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDRNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|302380365|ref|ZP_07268835.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311855|gb|EFK93866.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 243

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 12/151 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EH 186
           V++ Q+L  L+++NDP N+G I+RSA AF  + I+ +       ++   +SA G+L   +
Sbjct: 93  VKSDQILF-LENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMN 151

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPK 243
           I Y  I    + L+K  S GF+     L  +S+  L  EIKN +K  LI+G E  G+  +
Sbjct: 152 ISYENI----NVLEKYKSNGFKIYETSLEKNSRSIL--EIKNKEKHVLIIGNEANGISDE 205

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ A     + M  + ++LN S AA+++++
Sbjct: 206 IKKYADEFLIIPMDNVTESLNASIAASLSMF 236


>gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 175

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 7/152 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   HN+G++LRS  AF  + +      +   SA + K+A GA + + +   +
Sbjct: 17  LIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAEDSVTWKYFA 76

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
             TDA+ ++H+ G +   +   +   + Q +  +   + A++LG E KG++    +    
Sbjct: 77  QTTDAIDELHAKGTKVFAVEQVAGSTMLQNLDTEVGTRYAVVLGNEVKGVQQTVVDLCDG 136

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS AA + ++     FAK
Sbjct: 137 CLEIPQFGTKHSLNVSVAAGIVVW----EFAK 164


>gi|251781823|ref|YP_002996125.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390452|dbj|BAH80911.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 245

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           ++L+ V DP N+G I+R+A A   DG+  +++ +   ++   +S  G+  H+P  R  I 
Sbjct: 104 LILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLPIWRTDIY 163

Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +   +Q+ ++    T    +S D K    QE      AL++G EG+G+  +    A  +
Sbjct: 164 KICREMQEHNTPVLATTLSKVSVDYKTVPHQE----SFALVMGNEGQGISAEMTTLADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|331003584|ref|ZP_08327081.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412425|gb|EGG91816.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 251

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            + +LD + DPHN+GAI+R+A      G+I  K  +   +A +A++++GA+ + P  +++
Sbjct: 97  FIFILDGIEDPHNLGAIIRTANLSGAHGVIIPKHRAVGLTAAVARASAGAINYTPVAKVT 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   +Q++   G   +      +K    ++    I L++G EG G+    ++    +A 
Sbjct: 157 NINKTMQELKDAGMWFVCADMGGEKMYNIDLTG-SIGLVIGNEGDGVSESVKKNCDFIAS 215

Query: 254 LHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
           + M G I +LN S A  V  Y I +   AK
Sbjct: 216 IPMNGDIDSLNASVACGVLAYEIVRQRIAK 245


>gi|284029149|ref|YP_003379080.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283808442|gb|ADB30281.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 270

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 99/215 (46%), Gaps = 8/215 (3%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLD--WDANLPHP 90
           QS   ++  + + + + +YG   V  ALN+P+  + +++   NA    LD    A     
Sbjct: 20  QSGADRAELSPRDKWITIYGRKPVLEALNDPALSVAKVVVADNAGGGSLDEILAAARRLG 79

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRNSQL----LMVLDHVNDPH 145
            PV+      +  + G     QG+  +  AP ++P  + +R        + +LD V +P 
Sbjct: 80  TPVERASSTRVKWLAGNGKQDQGVVADVDAPRMTPLPNFLRQRGRRPTKVFLLDGVTNPG 139

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+A     DG+I  +  +P    ++ K+++G     P +       A+  + + 
Sbjct: 140 NVGMILRTATGAGFDGVILPRAGTPHVGPLVIKASAGVAFQAPIVNAPTAKGAVDALRAA 199

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           G++  GLS+ S++ L +     +   +LG E  G+
Sbjct: 200 GYEIYGLSARSQRSLFRTELAPRAVFVLGGETHGI 234


>gi|217962043|ref|YP_002340613.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
 gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
 gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
 gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
          Length = 254

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+             A+ + + L+ LD + DP N+
Sbjct: 67  VEMYIV----PEAIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDRNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|167464658|ref|ZP_02329747.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381394|ref|ZP_08055393.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154621|gb|EFX46896.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 272

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 21/184 (11%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           T  PQ I  +V K    Q L L TA              L++V+D V DP N+G I+RSA
Sbjct: 91  TETPQGIFAVVRKS--EQSLELITA----------EEWDLVVVVDGVQDPGNLGTIIRSA 138

Query: 155 VAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            A     I+    T   Y+P       +S  G+L H+P I  ++L D L K    G Q +
Sbjct: 139 DAVGASAIVLGRGTVDIYNPKA----IRSTMGSLFHLPVIE-ADLADLLPKAVKAGIQVL 193

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
                ++K   +        +I+G EGKG   +  E AT    + M G  ++LNV+ AA 
Sbjct: 194 CTDLKAEKNCYEIDFTIPTWIIVGNEGKGTSREAGELATQSMIIPMKGHAESLNVAMAAT 253

Query: 271 VALY 274
           V L+
Sbjct: 254 VLLF 257


>gi|160941410|ref|ZP_02088747.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435971|gb|EDP13738.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
           BAA-613]
          Length = 274

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A+   PL  P  +    ++ + VL++V +P N+GAI RSA A + DG++ T   S     
Sbjct: 104 AMYRPPLPGPE-EICEGARRIAVLENVMNPTNVGAIFRSAAALNMDGVLLTSACSNPLYR 162

Query: 175 VLAKSASGALEHIPYI----RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKND 227
              + + G +  IP+     R+S   + +  +   GF T  ++ +D    ++    +  +
Sbjct: 163 RAVRVSMGTVFQIPWTFLDSRLSWPQEGVGFLRELGFATAAMALNDDSVSIDDSGLMSEE 222

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K+A+ILG EG GL   T         + M   + +LNV+ A+AVA +
Sbjct: 223 KLAIILGTEGDGLAAGTIAGCDYTVRIPMSHGVDSLNVAAASAVAFW 269


>gi|148377354|ref|YP_001256230.1| rRNA methylase [Mycoplasma agalactiae PG2]
 gi|148291400|emb|CAL58784.1| rRNA methylase [Mycoplasma agalactiae PG2]
          Length = 243

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 11/145 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193
           ++ LD+V DP N+G I+R A +F  D +++   +   +   + +S+ GAL  +  +  + 
Sbjct: 98  VVFLDNVQDPGNVGTIIRVAKSFGFDTVVSNVNFYNDK---VIRSSQGALFTVNLVNYNY 154

Query: 194 -NLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETAT 249
            NLT+ L K    GF+    S D K  +E E    ++DK  ++ G EG G+     + A 
Sbjct: 155 DNLTNILLKYKQNGFKIYATSLD-KSSVEIEKVKFESDKAVIVFGNEGSGISSALADIAD 213

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  +++P   ++LNV+  A + LY
Sbjct: 214 ML--IYVPINFESLNVAICAGIVLY 236


>gi|307267644|ref|ZP_07549106.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917333|gb|EFN47645.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 217

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++   + ++ D++ DP N+G I+R+A AF    I T        +  + +++ G++ HIP
Sbjct: 65  IKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIP 124

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              I+  +  L K+   G +       ++K + +   +DK+A +LG E KG+     +  
Sbjct: 125 V--IATTSQILLKLKRRGIKVFATHLKAQKLVHECNISDKVAFVLGNEAKGV--SVVDLV 180

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G  ++LNVS AA++ LY +Q  
Sbjct: 181 DDFVKIPMTGEAESLNVSIAASIFLYESQRQ 211


>gi|153939007|ref|YP_001392409.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
 gi|152934903|gb|ABS40401.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
           Langeland]
 gi|295320398|gb|ADG00776.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
           230613]
          Length = 259

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ ++ +Q ++  + G      AL  N+   K+F    + N L  L    N+ +      
Sbjct: 17  REKKYRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    + K +G     QG+           LD ++N   ++V D V DP N+G I+R+A 
Sbjct: 77  VNYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+ITTK      +    +S  G++ +IP I   NL + ++ +   GF+ +  S D
Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLQKKGFKLLVSSLD 192

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          + I + +G EG G+       +     + MPG  ++LNV+ A ++  +
Sbjct: 193 TNSNFYDVNMKNNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251


>gi|257439912|ref|ZP_05615667.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
 gi|257197640|gb|EEU95924.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
          Length = 275

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 8/191 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           P+ T   + +  + G E     L     P      +  RN++ + VL+ + D  N+GAI 
Sbjct: 80  PIYTADRELLAALTGYELTRGVLCAFQRPKPRTVEELCRNARRVAVLEGIVDSTNVGAIF 139

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-----TDALQKMHSWG 206
           RSA A + D ++              + + G +  +P+ +I           L ++++ G
Sbjct: 140 RSAAALNMDAVLVNPSCCDPLCRRAVRVSMGTVFQVPWAQIGETPADWPEKGLAQLNALG 199

Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+T  ++ SD    ++ E   +  K+A++LG EG GL   T  +      + M   + +L
Sbjct: 200 FKTAAMALSDRSVSIDDEALAREPKLAIVLGTEGDGLSHTTIASCDYTVKIPMSHGVDSL 259

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 260 NVAAASAVAFW 270


>gi|148998503|ref|ZP_01825944.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|183603868|ref|ZP_02722493.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
 gi|307068582|ref|YP_003877548.1| rRNA methylase [Streptococcus pneumoniae AP200]
 gi|147755696|gb|EDK62742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|183577619|gb|EDT98147.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
 gi|306410119|gb|ADM85546.1| rRNA methylase [Streptococcus pneumoniae AP200]
          Length = 246

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTAEAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ A  + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 243


>gi|257068791|ref|YP_003155046.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256559609|gb|ACU85456.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 289

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 123/266 (46%), Gaps = 12/266 (4%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-TKN 76
           S  A++ R +  +++ Q+        ++   + + GV  ++ A+++   +I  LL+  + 
Sbjct: 16  SPPARIERRNALFQQWQALLTNRTKRTRSGEMLIQGVRPITQAISH-GVEIRALLSDGRE 74

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE-AVHQGLALETAPLLSPTLDAVR--NSQ 133
             +R   D     P PV  + P+ + ++  +E    + LAL   P  S +LD +    + 
Sbjct: 75  QPSRWAQDLLANAPAPVVVLAPELMAELGEREDGAPELLALAAVP--SDSLDRLEPTGAS 132

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V D  + P NIG++ RS  A   D ++ T   + +      ++++G+L  +P +R+ 
Sbjct: 133 LVVVFDRPSGPGNIGSLARSVDALGADALLLTGHSADAWDPAAIRASTGSLFAVPVMRLP 192

Query: 194 N---LTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   + D L +  + G  +  +GL       L          L++G E  G+    +E  
Sbjct: 193 SHREVLDWLTRRRALGEPWTVLGLDEAGGHDLAAADLTGPTLLVVGNETVGMSSGWREAC 252

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +A + M G   +LN S A +VALY
Sbjct: 253 DVIAEIPMTGAASSLNASVAGSVALY 278


>gi|170717985|ref|YP_001783524.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336]
 gi|168826114|gb|ACA31485.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336]
          Length = 350

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD  +    L+VL+ V +PHNIG I+R+ V +    ++         SAV  + A G +E
Sbjct: 196 LDIPQQKNCLLVLNGVRNPHNIGGIIRTCVCYGISAVVIDD-VELLHSAVAMRVAEGGME 254

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILG-AEGKGLRPK 243
           +I  + I     AL K+   G+Q + LSS+   K ++Q   +DK+A +L  A+ + L  K
Sbjct: 255 YIHPLEIDRTETALVKLRQAGYQIVHLSSNKHAKTIKQLQLDDKVAFVLSEADTESLADK 314

Query: 244 TQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273
             E    + +L +   +K  LNVS A  + L
Sbjct: 315 ADE----LINLSLVNPLKHGLNVSVATGILL 341


>gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 270

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 115/256 (44%), Gaps = 8/256 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-- 82
           R +   K+++  N K ++  +  +  + G+  V  A+N     I  ++ ++ A  R    
Sbjct: 12  RENECIKRVKKLNDK-KYREEFRSFIIEGLKLVKEAINYQIECINLVIFSQQAKDRYQEF 70

Query: 83  -WDA-NLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
            W+   L     +K V   P  + + +   +  QG+ L     +   ++ ++N + ++V 
Sbjct: 71  YWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGI-LAECNFVDKDINFIKNLKRVVVA 129

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+G ++R A AF  D ++TTK      +    ++  G+L H+  +R +     
Sbjct: 130 DKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIRATMGSLFHLQIMREAEEGKL 189

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ +    F     +      + + + + K  +++G E +G+     + A     + M G
Sbjct: 190 IKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIGNESEGVSDSFAKVAARKIKIPMAG 249

Query: 259 IIKALNVSNAAAVALY 274
             ++LN + AA++ LY
Sbjct: 250 KAESLNAAVAASIVLY 265


>gi|291320023|ref|YP_003515281.1| rRNA methylase [Mycoplasma agalactiae]
 gi|290752352|emb|CBH40323.1| rRNA methylase [Mycoplasma agalactiae]
          Length = 243

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 11/145 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193
           ++ LD+V DP N+G I+R A +F  D +++   +   +   + +S+ GAL  +  +  + 
Sbjct: 98  VVFLDNVQDPGNVGTIIRIAKSFGFDTVVSNVNFYNDK---VIRSSQGALFTVNLVNYNY 154

Query: 194 -NLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETAT 249
            NLT+ L K    GF+    S D K  +E E    ++DK  ++ G EG G+     + A 
Sbjct: 155 DNLTNILLKYKQNGFKIYATSLD-KSSVEIEKVKFESDKAVIVFGNEGSGISSALADIAD 213

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  +++P   ++LNV+  A + LY
Sbjct: 214 ML--IYVPINFESLNVAVCAGIVLY 236


>gi|238504252|ref|XP_002383357.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
 gi|220690828|gb|EED47177.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
          Length = 495

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 127/314 (40%), Gaps = 92/314 (29%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLL----------ATKNALARL------------ 81
           + P + F+YG   V AAL    R++++L           + K AL +L            
Sbjct: 171 TTPASEFIYGTSAVEAALRCSRRRMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAF 230

Query: 82  -DWD-------ANLPH--------PFP------VKTVPPQTIDKIVGKEAVHQGLALETA 119
             WD       A  PH        P P      +K+VP    +       V  G      
Sbjct: 231 GGWDRLLDKMSAGRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDF----GVELGAQSREE 286

Query: 120 PLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            L++ T D ++           ++++LD + DP N+GAI+RSA     D II   R S  
Sbjct: 287 ALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAP 346

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            S V  K+++GA E++  + +SN  D +Q  K + W F     ++D+  P  + +    I
Sbjct: 347 LSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKF----YAADAPGPASKYVDTASI 402

Query: 230 ------------------ALILGAEGKGLRPKTQETATSM-----AHLHMP-GI------ 259
                              +++G+EG GL    +  A S+     A L  P G+      
Sbjct: 403 VEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSR 462

Query: 260 IKALNVSNAAAVAL 273
           + +LNVS AAA+ +
Sbjct: 463 VDSLNVSVAAALLM 476


>gi|296187098|ref|ZP_06855496.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
 gi|296048292|gb|EFG87728.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
          Length = 213

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 7/208 (3%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           IF   + K+     D  + L     +  V  Q + K++      QG+   TA + +  L+
Sbjct: 4   IFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQVL-KLLSDTETPQGI---TAVVDNKELN 59

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                   +++D V DP N+G I+R+A A    G+I TK      +    +S  G++ H+
Sbjct: 60  VENKEGFYVLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHV 119

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQE 246
           P I+ ++L + +  +   GF  +  S ++ K   + ++K  KI + +G EG G+  +   
Sbjct: 120 PVIQDNDL-NKVNFLKEKGFNLVASSLNTDKNFYDVDLKGKKI-IAVGNEGSGISDEIYN 177

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     + MPG  ++LNVS AA V ++
Sbjct: 178 MADIKVKIPMPGGAESLNVSVAAGVMMF 205


>gi|269137918|ref|YP_003294618.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267983578|gb|ACY83407.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304557970|gb|ADM40634.1| hypothetical tRNA/rRNA methyltransferase YfiF [Edwardsiella tarda
           FL6-60]
          Length = 393

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +   DAV     ++ L++V +PHN+G I+R+   F   GII  +  +  ES    ++A
Sbjct: 235 LANQAEDAV---DCVLALENVANPHNLGGIMRTCAHFGIRGIIAPE-SAALESGAAVRTA 290

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G  EH+  I   + + AL      G+  +  SS      L +     KI L++G EG G
Sbjct: 291 EGGAEHVQAIDAEDFSAALDTFRRAGYTIVTTSSHKGTTQLHRATLPAKIVLVVGHEGDG 350

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           L   T +       +   G +++LNVS A  + L  +  QN
Sbjct: 351 LSDGTLQQGDLSVSIGGTGSVESLNVSVATGIMLAEWWRQN 391


>gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
 gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
          Length = 253

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 73/144 (50%), Gaps = 9/144 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
            ++LD V DP N+G I+R+A A   D I+    T   Y+P     + +SA G+  H+P I
Sbjct: 109 FLMLDEVQDPGNLGTIIRTADAAGIDVIVLGEGTADLYNPK----VLRSAQGSHFHLPII 164

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +  NL+  + ++ +      G + ++          D  ALILG EG G+ P   ++   
Sbjct: 165 K-GNLSSWIDRLRTEEIPVYGTALENSAAYHTVNSTDSFALILGNEGNGVSPSILDSTDQ 223

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
             ++ + G  ++LNV+ AA + +Y
Sbjct: 224 NLYVPIYGKSESLNVAIAAGILMY 247


>gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987]
          Length = 254

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 118/256 (46%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL      + +L+ +       DW  N 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--VGVVTELIVSDQTDLPKDWTVND 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P++I K++ +    QG+             A+ + + L+ LD + DP N+
Sbjct: 67  VEMYIV----PESIVKVLRETETTQGVFAVCEKHEKEV--ALADGKFLL-LDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 120 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKENNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 179 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 237 AVAAGILTYYLQSPVA 252


>gi|195646036|gb|ACG42486.1| spoU rRNA Methylase family protein [Zea mays]
          Length = 345

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 17/156 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 242

Query: 194 -----NLTDALQKMHSWGFQTIGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLR 241
                 +T    KM +   ++   SSD+ K        L   + N+ + L+LG+EG GL 
Sbjct: 243 HDLHALVTKYRMKMMAGHPES---SSDASKETYSLSNELADSLLNESLCLVLGSEGNGLS 299

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +T + A  + ++ M G  ++LNVS A  + L++ Q
Sbjct: 300 AETLQ-ACELVNIPMEGTFESLNVSVAGGIFLFMLQ 334


>gi|317049240|ref|YP_004116888.1| tRNA/rRNA methyltransferase SpoU [Pantoea sp. At-9b]
 gi|316950857|gb|ADU70332.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. At-9b]
          Length = 359

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +S  L        ++ L+ V++PHN+G I+RS   F   G++     S  ES    ++A 
Sbjct: 201 VSEWLSQAEAKDCVLALEDVSNPHNLGGIMRSCAHFGVKGLLVND-ASLLESGAAVRTAE 259

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G  EH+  I   + +  L+     G+  +  SS    PL +     K+ L+LG E +GL 
Sbjct: 260 GGAEHVQAISGESFSAGLEAFRKAGYTIVTTSSHEGTPLAKAELPAKMVLVLGQEREGLS 319

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
               +       +   G +++LNVS A  + L  +  QN
Sbjct: 320 DSAFQQGDMSLSIGGTGNVESLNVSVATGILLAEWWRQN 358


>gi|148985553|ref|ZP_01818742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922273|gb|EDK73394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP3-BS71]
          Length = 236

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 72  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 116

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 117 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 175

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ A  + ++
Sbjct: 176 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 233


>gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 260

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 26/254 (10%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIF----QLLATKNALARLDWD 84
           K ++S  + +RH  +  +  + GV  V+ AL   +  R +     QL  T    A L+  
Sbjct: 13  KWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAGTALLNRL 72

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +LPH FP     P  I      E     +A  T P L P         L +VLD + DP
Sbjct: 73  RHLPHCFPAT---PAVIVAAADTEQPQGVVAAVTWPELPP------RPGLRLVLDAIQDP 123

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G +LRSA A     ++         +  +A++A GA   +P +R+S       ++ S
Sbjct: 124 GNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMGAHFLVP-LRVSPWETIRAELQS 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH----LHMPGII 260
             +      S  ++P          ALI+G E  GL     E A ++AH    + M G I
Sbjct: 183 --YTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGL----SEPARALAHQTITIPMSGSI 236

Query: 261 KALNVSNAAAVALY 274
           ++LN   A ++ L+
Sbjct: 237 ESLNAGVAGSIILF 250


>gi|188586434|ref|YP_001917979.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351121|gb|ACB85391.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 269

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 10/148 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---R 191
           +++L  V DP N+G ++RSA AF   G++ +K      +  + +S+ G+L HIP +    
Sbjct: 116 ILILYQVQDPGNMGTLIRSADAFGFQGVVCSKGCVDPTNDKVVRSSMGSLFHIPVVMNSE 175

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-----KTQE 246
           I  L   LQ+     F   G  S SK  +  ++ N  +AL +G E +GL+      K  +
Sbjct: 176 IDQLFQVLQREQY--FILFGDKSGSKPIMTIDLSNTAVALFVGNESRGLQDLNFDQKFNQ 233

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                  + M G  ++LN   A ++ +Y
Sbjct: 234 VRHQKVEIPMFGKAESLNAGIAGSIMMY 261


>gi|224023886|ref|ZP_03642252.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
           18228]
 gi|224017108|gb|EEF75120.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
           18228]
          Length = 282

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 6/187 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     + ++ G       L     P +    +  ++++ ++V+  V D  NIGAI
Sbjct: 78  IPVYTGERDLLARLTGYTLTRGVLCAMRRPCVREVAEVCKDARRVVVIHGVVDTTNIGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++ T       +    + + G++  +P+       + L+++   GF+T 
Sbjct: 138 FRSAAALGIDAVLLTPDSCDPLNRRAVRVSMGSVFLVPWTWADRPLECLKEL---GFKTA 194

Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            L+ +D   PL+  +  +  ++AL++G EG GL     + A  +A + M   + +LNV+ 
Sbjct: 195 ALALTDRSVPLDYPLLKQESRLALVMGTEGDGLPQTAIDGADYVARIPMYHGVDSLNVAA 254

Query: 268 AAAVALY 274
           A+AVA +
Sbjct: 255 ASAVAFW 261


>gi|331643205|ref|ZP_08344340.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H736]
 gi|332278261|ref|ZP_08390674.1| conserved hypothetical protein [Shigella sp. D9]
 gi|331040003|gb|EGI12223.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H736]
 gi|332100613|gb|EGJ03959.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 349

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347


>gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
 gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
          Length = 266

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 5/156 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R + L++VLD + DP N+G I+RSA A    G++  +  +   +    +S  G+L H+P
Sbjct: 110 LRENGLVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLP 169

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET 247
            +   +L   L +    G + +    + ++   E + K     +++G+EG+G+ P+    
Sbjct: 170 VLE-GDLLSILPEARERGARLVTTMLEGQRSCFEYDFKGTSW-IVIGSEGRGVSPEVAAL 227

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
                 + MPG  ++LN + AA+V +Y  + Q  +A
Sbjct: 228 VDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYA 263


>gi|149021923|ref|ZP_01835910.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929961|gb|EDK80949.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP23-BS72]
          Length = 236

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 72  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 116

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 117 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 175

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ A  + ++
Sbjct: 176 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 233


>gi|331648328|ref|ZP_08349417.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M605]
 gi|331042877|gb|EGI15018.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M605]
          Length = 349

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347


>gi|323484883|ref|ZP_08090238.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
 gi|323401764|gb|EGA94107.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
          Length = 266

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 17/177 (9%)

Query: 112 QGLALETAPLLSPTLDAV-------RNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           QG+ L  A  LS +L+ +       RNS   LM+L+ + DP N+G ILR+       G++
Sbjct: 89  QGI-LAVAAQLSHSLNEIVKGDGIKRNSPAHLMILETIQDPGNLGTILRAGEGAGITGVV 147

Query: 164 ----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
               T   Y+P     + +S  G++  +P++ + +   AL ++ + G +        K  
Sbjct: 148 MNSATADIYNPK----VIRSTMGSIYRVPFVYVEDWQQALGRIKAEGIRLYAAHLKGKVS 203

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            E E        ++G E  GL  +T   A     + M G +++LN + AA++ ++ T
Sbjct: 204 YENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMAGQVESLNAAVAASILMFET 260


>gi|30063982|ref|NP_838153.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|30042238|gb|AAP17963.1| hypothetical protein S2816 [Shigella flexneri 2a str. 2457T]
 gi|281601993|gb|ADA74977.1| putative rRNA methylase [Shigella flexneri 2002017]
 gi|313648260|gb|EFS12704.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2a str. 2457T]
 gi|332753991|gb|EGJ84365.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 4343-70]
 gi|332755829|gb|EGJ86187.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2747-71]
 gi|332761975|gb|EGJ92248.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-671]
 gi|332766583|gb|EGJ96788.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2930-71]
 gi|333000441|gb|EGK20023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri VA-6]
 gi|333000847|gb|EGK20419.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-218]
 gi|333001674|gb|EGK21241.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-272]
 gi|333015950|gb|EGK35285.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-227]
 gi|333016824|gb|EGK36150.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-304]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|301024868|ref|ZP_07188505.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 69-1]
 gi|300396399|gb|EFJ79937.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 69-1]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|157156261|ref|YP_001463905.1| putative methyltransferase [Escherichia coli E24377A]
 gi|191167962|ref|ZP_03029764.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
 gi|218696209|ref|YP_002403876.1| putative methyltransferase [Escherichia coli 55989]
 gi|300820739|ref|ZP_07100889.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 119-7]
 gi|300927042|ref|ZP_07142794.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 182-1]
 gi|301330317|ref|ZP_07222964.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 78-1]
 gi|307313848|ref|ZP_07593464.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
 gi|309794365|ref|ZP_07688788.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 145-7]
 gi|331669332|ref|ZP_08370180.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA271]
 gi|157078291|gb|ABV17999.1| RNA methyltransferase, TrmH family [Escherichia coli E24377A]
 gi|190901969|gb|EDV61716.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
 gi|218352941|emb|CAU98740.1| putative methyltransferase [Escherichia coli 55989]
 gi|300416926|gb|EFK00237.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 182-1]
 gi|300526492|gb|EFK47561.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 119-7]
 gi|300843651|gb|EFK71411.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 78-1]
 gi|306906349|gb|EFN36864.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
 gi|308121821|gb|EFO59083.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 145-7]
 gi|315061900|gb|ADT76227.1| predicted methyltransferase [Escherichia coli W]
 gi|323377519|gb|ADX49787.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli KO11]
 gi|324118209|gb|EGC12105.1| SpoU rRNA methylase [Escherichia coli E1167]
 gi|331064526|gb|EGI36437.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA271]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|331654044|ref|ZP_08355045.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M718]
 gi|331048893|gb|EGI20969.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M718]
          Length = 349

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347


>gi|331674030|ref|ZP_08374793.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA280]
 gi|331069303|gb|EGI40695.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA280]
          Length = 349

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347


>gi|159030692|emb|CAO88365.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 264

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL +VL+ + DP N+G I+R+AVA    GI  +      ++  + +S++G     P +  
Sbjct: 111 QLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSPLVVE 170

Query: 193 SNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           S+L+  ++K  + G + I  L + +K   E +     + ++LG EG GL P+    A   
Sbjct: 171 SDLSALVKKYQAQGVKAIATLPTATKNHWEIDFTRPTL-ILLGNEGAGLSPQLATLADET 229

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + + G +++LNV+ A AV LY
Sbjct: 230 VKIPLFGGVESLNVAIATAVILY 252


>gi|110642743|ref|YP_670473.1| putative methyltransferase [Escherichia coli 536]
 gi|191174012|ref|ZP_03035529.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
 gi|227887617|ref|ZP_04005422.1| methyltransferase [Escherichia coli 83972]
 gi|300935715|ref|ZP_07150684.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 21-1]
 gi|300974114|ref|ZP_07172464.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 200-1]
 gi|301047220|ref|ZP_07194312.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 185-1]
 gi|306814355|ref|ZP_07448517.1| putative methyltransferase [Escherichia coli NC101]
 gi|110344335|gb|ABG70572.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           536]
 gi|190905703|gb|EDV65325.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
 gi|227835967|gb|EEJ46433.1| methyltransferase [Escherichia coli 83972]
 gi|281179630|dbj|BAI55960.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|300300897|gb|EFJ57282.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 185-1]
 gi|300308937|gb|EFJ63457.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 200-1]
 gi|300459104|gb|EFK22597.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 21-1]
 gi|305851749|gb|EFM52201.1| putative methyltransferase [Escherichia coli NC101]
 gi|307554600|gb|ADN47375.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli ABU
           83972]
 gi|320196417|gb|EFW71041.1| putative methyltransferase [Escherichia coli WV_060327]
 gi|324014374|gb|EGB83593.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 60-1]
 gi|330912349|gb|EGH40859.1| hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           AA86]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 254

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++   + ++ D++ DP N+G I+R+A AF    I T        +  + +++ G++ HIP
Sbjct: 102 IKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDVFNPKVLRASMGSIFHIP 161

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            I  +  +  L K+   G +       ++K + +   +DK+A +LG E KG+     +  
Sbjct: 162 VIAAT--SQILLKLKQRGIKVFATYLKAQKLVHECNISDKVAFVLGNEAKGV--SVVDLV 217

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G  ++LNVS AA++ LY +Q  
Sbjct: 218 DDFVKIPMTGEAESLNVSIAASIFLYESQRQ 248


>gi|327490084|gb|EGF21872.1| SpoU rRNA methylase [Streptococcus sanguinis SK1058]
          Length = 246

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L++V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
            D ++   S     +  +  S     +E+ N +   L++G EG+G+ P+  E A  + H+
Sbjct: 164 ADFIRLARSSSLPILASTLSSTSIDYREVVNKESFVLVMGNEGQGISPEMTEAADLLVHI 223

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G  ++LNV+ AA + ++
Sbjct: 224 SMKGQAESLNVAVAAGILIF 243


>gi|168492052|ref|ZP_02716195.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|307128172|ref|YP_003880203.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
 gi|183573736|gb|EDT94264.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|301800735|emb|CBW33383.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|306485234|gb|ADM92103.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
          Length = 246

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ A  + ++
Sbjct: 186 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 243


>gi|323156241|gb|EFZ42400.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli EPECa14]
          Length = 247

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 100 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 159 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 218

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           +   G +  LN+S A  V L
Sbjct: 219 IDGTGNVAGLNISVATGVLL 238


>gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
 gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
          Length = 264

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 115/263 (43%), Gaps = 22/263 (8%)

Query: 20  YAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATK 75
           Y  L   H D  K +    Q +R   + + + L G+H + AAL     P+    Q    +
Sbjct: 5   YRSLTSPHNDTLKHLARLVQFARDRRKDDVIVLEGIHLLEAALEQGIVPA----QCFINE 60

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLL---SPTLDAVRN 131
            AL R +    L          PQT+  +V  EA+   L +L +AP L    P     R 
Sbjct: 61  AALGRAEVSVLLARL-------PQTLSPLVVPEALLGKLTSLSSAPELIAVCPRPHPPRR 113

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S   ++L+ + DP N+G ILRSA A     +  +K  +   S  + ++  GA   +    
Sbjct: 114 SGSCLLLEDIQDPGNMGTILRSAAASGVMEVFLSKGCADVFSPKVLRAGMGAHFVLNLHE 173

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            ++L + L      G + +     S+    Q+++ D +A + G EG G+     + A   
Sbjct: 174 AADLAEVLGGF--AGRKLVTHLEGSQSLYAQDLRGD-VAFVFGNEGAGVSAGLLQLADCR 230

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + MPG  ++LNV+ AA + L+
Sbjct: 231 VRIPMPGHAESLNVAMAATICLF 253


>gi|168468062|ref|ZP_02701899.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195628860|gb|EDX48274.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 313

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|15832701|ref|NP_311474.1| methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|16130506|ref|NP_417076.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|74313144|ref|YP_311563.1| putative methyltransferase [Shigella sonnei Ss046]
 gi|82778009|ref|YP_404358.1| putative methyltransferase [Shigella dysenteriae Sd197]
 gi|89109387|ref|AP_003167.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|168752077|ref|ZP_02777099.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757754|ref|ZP_02782761.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168765025|ref|ZP_02790032.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768686|ref|ZP_02793693.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773490|ref|ZP_02798497.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778560|ref|ZP_02803567.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790382|ref|ZP_02815389.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC869]
 gi|168801700|ref|ZP_02826707.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC508]
 gi|170019136|ref|YP_001724090.1| putative methyltransferase [Escherichia coli ATCC 8739]
 gi|170082190|ref|YP_001731510.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683534|ref|YP_001744770.1| putative methyltransferase [Escherichia coli SMS-3-5]
 gi|187730537|ref|YP_001881368.1| putative methyltransferase [Shigella boydii CDC 3083-94]
 gi|188494800|ref|ZP_03002070.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
 gi|193064052|ref|ZP_03045137.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
 gi|193068401|ref|ZP_03049364.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
 gi|194429284|ref|ZP_03061811.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
 gi|194437701|ref|ZP_03069797.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
 gi|195936729|ref|ZP_03082111.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208808899|ref|ZP_03251236.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814513|ref|ZP_03255842.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821234|ref|ZP_03261554.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397290|ref|YP_002272056.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920061|ref|YP_002294145.1| putative methyltransferase [Escherichia coli SE11]
 gi|217327232|ref|ZP_03443315.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555164|ref|YP_002388077.1| putative methyltransferase [Escherichia coli IAI1]
 gi|238901746|ref|YP_002927542.1| putative methyltransferase [Escherichia coli BW2952]
 gi|253772519|ref|YP_003035350.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162556|ref|YP_003045664.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|254794532|ref|YP_003079369.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|256017269|ref|ZP_05431134.1| putative methyltransferase [Shigella sp. D9]
 gi|256021732|ref|ZP_05435597.1| putative methyltransferase [Escherichia sp. 4_1_40B]
 gi|260845267|ref|YP_003223045.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260856675|ref|YP_003230566.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|260869267|ref|YP_003235669.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|261222983|ref|ZP_05937264.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259467|ref|ZP_05952000.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283857|ref|YP_003500675.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
 gi|293410997|ref|ZP_06654573.1| RNA methyltransferase [Escherichia coli B354]
 gi|293446936|ref|ZP_06663358.1| methyltransferase [Escherichia coli B088]
 gi|297517286|ref|ZP_06935672.1| putative methyltransferase [Escherichia coli OP50]
 gi|300817642|ref|ZP_07097857.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 107-1]
 gi|300904235|ref|ZP_07122094.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 84-1]
 gi|300920749|ref|ZP_07137155.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 115-1]
 gi|300927708|ref|ZP_07143276.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 187-1]
 gi|300951699|ref|ZP_07165519.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 116-1]
 gi|300958777|ref|ZP_07170890.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 175-1]
 gi|301021932|ref|ZP_07185891.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 196-1]
 gi|301302948|ref|ZP_07209076.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 124-1]
 gi|301648346|ref|ZP_07248086.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 146-1]
 gi|307139219|ref|ZP_07498575.1| putative methyltransferase [Escherichia coli H736]
 gi|309784597|ref|ZP_07679232.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|312973173|ref|ZP_07787345.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|84027943|sp|P0AGJ6|YFIF_ECO57 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
 gi|84027944|sp|P0AGJ5|YFIF_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
 gi|1788935|gb|AAC75634.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362918|dbj|BAB36870.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|73856621|gb|AAZ89328.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81242157|gb|ABB62867.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675469|dbj|BAA16467.2| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|169754064|gb|ACA76763.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli ATCC 8739]
 gi|169890025|gb|ACB03732.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521252|gb|ACB19430.1| RNA methyltransferase, TrmH family [Escherichia coli SMS-3-5]
 gi|187427529|gb|ACD06803.1| RNA methyltransferase, TrmH family [Shigella boydii CDC 3083-94]
 gi|187770634|gb|EDU34478.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013998|gb|EDU52120.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489999|gb|EDU65102.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
 gi|189003528|gb|EDU72514.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355309|gb|EDU73728.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362321|gb|EDU80740.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365089|gb|EDU83505.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370139|gb|EDU88555.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC869]
 gi|189376184|gb|EDU94600.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC508]
 gi|192929287|gb|EDV82896.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
 gi|192958353|gb|EDV88793.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
 gi|194412692|gb|EDX28987.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
 gi|194423507|gb|EDX39498.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
 gi|208728700|gb|EDZ78301.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735790|gb|EDZ84477.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741357|gb|EDZ89039.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158690|gb|ACI36123.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762748|gb|ACI79686.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762750|gb|ACI79687.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762752|gb|ACI79688.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762754|gb|ACI79689.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762756|gb|ACI79690.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209913320|dbj|BAG78394.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217319599|gb|EEC28024.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           TW14588]
 gi|218361932|emb|CAQ99533.1| putative methyltransferase [Escherichia coli IAI1]
 gi|238862664|gb|ACR64662.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|242378181|emb|CAQ32956.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323563|gb|ACT28165.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974457|gb|ACT40128.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253978624|gb|ACT44294.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|254593932|gb|ACT73293.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|257755324|dbj|BAI26826.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257760414|dbj|BAI31911.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257765623|dbj|BAI37118.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|260448339|gb|ACX38761.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli DH1]
 gi|290763730|gb|ADD57691.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
 gi|291323766|gb|EFE63194.1| methyltransferase [Escherichia coli B088]
 gi|291471465|gb|EFF13949.1| RNA methyltransferase [Escherichia coli B354]
 gi|299881399|gb|EFI89610.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 196-1]
 gi|300314585|gb|EFJ64369.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 175-1]
 gi|300403768|gb|EFJ87306.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 84-1]
 gi|300412320|gb|EFJ95630.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 115-1]
 gi|300449061|gb|EFK12681.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 116-1]
 gi|300464261|gb|EFK27754.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 187-1]
 gi|300529630|gb|EFK50692.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 107-1]
 gi|300841883|gb|EFK69643.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 124-1]
 gi|301073622|gb|EFK88428.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 146-1]
 gi|308927494|gb|EFP72966.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|309702967|emb|CBJ02298.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
 gi|310331768|gb|EFP99003.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|315137205|dbj|BAJ44364.1| rRNA methylase [Escherichia coli DH1]
 gi|315256609|gb|EFU36577.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 85-1]
 gi|315615843|gb|EFU96475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 3431]
 gi|320176115|gb|EFW51182.1| putative methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320188922|gb|EFW63581.1| putative methyltransferase [Escherichia coli O157:H7 str. EC1212]
 gi|320200145|gb|EFW74734.1| putative methyltransferase [Escherichia coli EC4100B]
 gi|320640830|gb|EFX10324.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101]
 gi|320646176|gb|EFX15116.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89]
 gi|320651471|gb|EFX19867.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687]
 gi|320657073|gb|EFX24892.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662738|gb|EFX30077.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905]
 gi|323159154|gb|EFZ45145.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli E128010]
 gi|323167780|gb|EFZ53475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella sonnei 53G]
 gi|323173100|gb|EFZ58731.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli LT-68]
 gi|323177288|gb|EFZ62876.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1180]
 gi|323184539|gb|EFZ69913.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1357]
 gi|323936321|gb|EGB32612.1| SpoU rRNA methylase [Escherichia coli E1520]
 gi|323941156|gb|EGB37341.1| SpoU rRNA methylase [Escherichia coli E482]
 gi|323944581|gb|EGB40650.1| SpoU rRNA methylase [Escherichia coli H120]
 gi|323961196|gb|EGB56809.1| SpoU rRNA methylase [Escherichia coli H489]
 gi|323971092|gb|EGB66339.1| SpoU rRNA methylase [Escherichia coli TA007]
 gi|324020040|gb|EGB89259.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 117-3]
 gi|326340387|gb|EGD64191.1| putative methyltransferase [Escherichia coli O157:H7 str. 1125]
 gi|326345070|gb|EGD68814.1| putative methyltransferase [Escherichia coli O157:H7 str. 1044]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|322807442|emb|CBZ05016.1| RNA methyltransferase, TrmH family [Clostridium botulinum H04402
           065]
          Length = 259

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 6/239 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ ++ +Q ++  + G      AL  N+   K+F    + N L  L    N+ +      
Sbjct: 17  REKKYRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLEELYKKYNINNDIETYV 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    + K +G     QG+           LD ++N   ++V D V DP N+G I+R+A 
Sbjct: 77  VNYSVL-KSIGNTENPQGIVSVINYFKKEKLD-LQNGFYILV-DKVQDPGNMGTIIRTAH 133

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+ITTK      +    +S  G++ +IP I   NL + ++ +   GF+ +  S D
Sbjct: 134 AAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVKSLQKKGFKLLVSSLD 192

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          + I + +G EG G+       +     + MPG  ++LNV+ A ++  +
Sbjct: 193 TNSNFYDVNMKNNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAAESLNVAVACSIMTF 251


>gi|229106374|ref|NP_754987.2| putative methyltransferase [Escherichia coli CFT073]
 gi|300982304|ref|ZP_07176012.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 45-1]
 gi|300408791|gb|EFJ92329.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 45-1]
 gi|315294515|gb|EFU53863.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 153-1]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|227505050|ref|ZP_03935099.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198414|gb|EEI78462.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 267

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++P N G ++R++ A   DG+I            +A++++G+L HIP  R  N+ D L +
Sbjct: 127 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGQ 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G Q +  ++D +  L +   +   A + G E  GL  + QE A     + + G  +
Sbjct: 187 LRKSGMQILATAADGEVDLAEADLSQPTAWLFGNEAHGL-GELQEEADMRVRIPILGRAE 245

Query: 262 ALNVSNAAAVALY 274
           +LN++ AA++ LY
Sbjct: 246 SLNLATAASICLY 258


>gi|222034286|emb|CAP77027.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Escherichia coli
           LF82]
 gi|312947153|gb|ADR27980.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|121708633|ref|XP_001272196.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
           NRRL 1]
 gi|119400344|gb|EAW10770.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
           NRRL 1]
          Length = 495

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 143/353 (40%), Gaps = 89/353 (25%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRN-HRDYKKMQSFNQKSRHT------SQPENLFLYGVHT 56
           +   K E    +K +   KL+R  HR  + M  F +           + P + FLYG   
Sbjct: 130 VEASKEEDPPKMKRAGRMKLKRGVHRFTETMPEFLKHHIKVPDFISHATPASQFLYGTSA 189

Query: 57  VSAALNNPSRKIFQLLA--------------------TKN---ALARLDWD-------AN 86
           V AAL    R++++L                      +KN    +A   WD       + 
Sbjct: 190 VEAALRCGRRQMYRLYIYQGDTDELGSNRSKLRKLALSKNIKVKMAYAGWDRLFDQMSSG 249

Query: 87  LPH--------PFPVKTVPPQTIDKI----VGKEAVHQGLALETAPLLSPTLDAV----- 129
            PH        P PV  +P +++  +    V +  V          L++ T D +     
Sbjct: 250 RPHNGCILDASPLPV--LPIKSLCAVPSLDVNEFRVTLAAQSREEALVNSTNDRIEIRHP 307

Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
              R   ++++LD + D  N+G I+RSA     D I+   R     S V  K+++GA E+
Sbjct: 308 PNRRRYPVIILLDGIVDKGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPVTIKASAGAAEN 367

Query: 187 IPYIRISNLTDALQKMHSWGFQ-------TIGLS-------SDSKKPLEQEIKNDKIALI 232
           +P ++++N  D +Q+  + G+Q        +G +       + ++ PL Q        L+
Sbjct: 368 MPMLKVTNEVDFIQQSKANGWQFYAADAPVLGATYLDNFDMAMTRNPLTQAPS----VLM 423

Query: 233 LGAEGKGLRPKTQETATSMAHL------------HMPGIIKALNVSNAAAVAL 273
           LG+EG GL P  +  A S+  +              P  + +LNVS AAA+ +
Sbjct: 424 LGSEGFGLSPHIKSQADSIVSIPGARAPTEWGTDSDPARVDSLNVSVAAAILM 476


>gi|293415850|ref|ZP_06658493.1| methyltransferase [Escherichia coli B185]
 gi|291433498|gb|EFF06477.1| methyltransferase [Escherichia coli B185]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFDVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLSEWWRQN 343


>gi|256370817|ref|YP_003108642.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009609|gb|ACU52969.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 242

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 1/142 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++LD + D  N G+I+R++     D II   + S + ++   K++SG +  IP  +  
Sbjct: 91  LLIILDSITDVRNFGSIVRTSACTGVDAIIIATKNSVTINSDSIKTSSGGIFKIPICKEK 150

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++ + S+G Q I ++  +     +    +  A ILG+E KG+  K      +   
Sbjct: 151 NIIKIIRYLKSFGIQVIAVTEKTDNICYKFNYKNPTAFILGSEQKGISKKYLSLCNNTVK 210

Query: 254 L-HMPGIIKALNVSNAAAVALY 274
           L  +   + +LNVS A    LY
Sbjct: 211 LPLIKNSLTSLNVSVACGAILY 232


>gi|209523883|ref|ZP_03272435.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
 gi|209495555|gb|EDZ95858.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
          Length = 259

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 2/149 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYI 190
           + L +VL+ V DP N+G ++R+A A   +G+ +++    P+   VL  SA GA   +P  
Sbjct: 108 TSLGLVLETVQDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASA-GAWFEVPIA 166

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             S+L   L      G Q +   +D+     +       A++LG EG GL P     A  
Sbjct: 167 VHSDLITQLSNSQKQGIQVVATRADASLSYWEIDLRQPTAIVLGNEGSGLSPDLNSLADY 226

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + + G +++LNV+  AA+ LY  Q  
Sbjct: 227 HIRVPLLGNVESLNVAICAALILYEAQRQ 255


>gi|197263980|ref|ZP_03164054.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242235|gb|EDY24855.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 345

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 313

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|315611869|ref|ZP_07886788.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296]
 gi|315316047|gb|EFU64080.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296]
          Length = 246

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 19/182 (10%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           T  PQ I  ++ KE V               L   R  + L  L+ V DP N+G ++R+A
Sbjct: 79  TQTPQGIVAVIQKEEVG--------------LPDFRQGKYLF-LEDVQDPGNVGTMIRTA 123

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-KMHSWGFQTIGLS 213
            A    G+I + + +   S    +S  G+  H+P  R+   T  ++ K  +  F    LS
Sbjct: 124 DAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPVATFVVEAKKSNLPFLATTLS 183

Query: 214 SDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            DSK   E   ++N    L++G EG+G+     E+A  + H+ M G  ++LNV+ AA + 
Sbjct: 184 RDSKDYRELSSLEN--FVLVMGNEGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGIL 241

Query: 273 LY 274
           ++
Sbjct: 242 MF 243


>gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
 gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
          Length = 265

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 121/257 (47%), Gaps = 20/257 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  + 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVDD 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+        S    A+ + + L+ LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGVFAVCEKHESEV--ALADGKFLL-LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPVVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMP--GIIKALN 264
              G + ++  P  +       ALI+G EG G+   +QE  A +  +L++P  G  ++LN
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGV---SQEILAKTDQNLYIPIYGGAESLN 246

Query: 265 VSNAAAVALYITQNHFA 281
           V+ AA +  Y  Q+  A
Sbjct: 247 VAVAAGILTYYLQSPVA 263


>gi|213425263|ref|ZP_03358013.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 274

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 1/143 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 124 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 182

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 183 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 242

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
              ++  G +++LNVS A  V L
Sbjct: 243 CVKINGTGNVESLNVSVATGVLL 265


>gi|26109353|gb|AAN81555.1|AE016764_237 Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           CFT073]
          Length = 370

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 223 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 281

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 282 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 341

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 342 IDGTGNVAGLNISVATGVLLGEWWRQN 368


>gi|332344456|gb|AEE57790.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli UMNK88]
          Length = 345

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|215487924|ref|YP_002330355.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gi|218690697|ref|YP_002398909.1| putative methyltransferase [Escherichia coli ED1a]
 gi|218701096|ref|YP_002408725.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218706086|ref|YP_002413605.1| putative methyltransferase [Escherichia coli UMN026]
 gi|293406024|ref|ZP_06650016.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298381824|ref|ZP_06991423.1| methyltransferase [Escherichia coli FVEC1302]
 gi|300895649|ref|ZP_07114249.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 198-1]
 gi|312965497|ref|ZP_07779729.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|331684231|ref|ZP_08384827.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H299]
 gi|215265996|emb|CAS10406.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218371082|emb|CAR18911.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218428261|emb|CAR09180.2| putative methyltransferase [Escherichia coli ED1a]
 gi|218433183|emb|CAR14081.1| putative methyltransferase [Escherichia coli UMN026]
 gi|284922533|emb|CBG35620.1| putative RNA methyltransferase [Escherichia coli 042]
 gi|291428232|gb|EFF01259.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298279266|gb|EFI20780.1| methyltransferase [Escherichia coli FVEC1302]
 gi|300360409|gb|EFJ76279.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 198-1]
 gi|312289917|gb|EFR17805.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|323188304|gb|EFZ73596.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli RN587/1]
 gi|331079183|gb|EGI50385.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H299]
          Length = 345

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|325695046|gb|EGD36949.1| SpoU rRNA methylase [Streptococcus sanguinis SK150]
          Length = 246

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  ++  +   +    +S  G+  H+P  RI + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISRLSADIYNLKTLRSMQGSHFHLPVYRI-DT 163

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D ++   S     +   LSS S    E + K +  AL++G EG+G+ P+    A  + H
Sbjct: 164 ADFIRLAQSSSLPILASTLSSTSIDYREVDSK-ESFALVMGNEGQGISPEMTAAADILVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243


>gi|194695936|gb|ACF82052.1| unknown [Zea mays]
          Length = 209

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 17/156 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 47  ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 106

Query: 195 ------LTDALQKMHSWGFQTIGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLR 241
                 +T    KM +   ++   SSD+ K        L   + N+ + L+LG+EG GL 
Sbjct: 107 HDLHALVTKYRMKMMAGHPES---SSDASKETYSLSNELADSLLNESLCLVLGSEGNGLS 163

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +T + A  + ++ M G  ++LNVS A  + L++ Q
Sbjct: 164 AETLQ-ACELVNIPMEGTFESLNVSVAGGIFLFMLQ 198


>gi|303233677|ref|ZP_07320331.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
 gi|302495111|gb|EFL54863.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
          Length = 243

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 12/151 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EH 186
           V++ Q+L  L+++NDP N+G I+RSA AF  + I+ +       ++   +SA G+L   +
Sbjct: 93  VKSDQILF-LENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMN 151

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPK 243
           I Y  I    + L+K  S GF+     L  +S+  L  EIKN +K  LI+G E  G+  +
Sbjct: 152 ISYENI----NVLEKYKSNGFKIYETSLEKNSRSIL--EIKNKEKHVLIIGNEANGISDE 205

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ A     + M  + ++LN S AA+++++
Sbjct: 206 IKKYADEFLIIPMDNLTESLNASIAASLSMF 236


>gi|295114857|emb|CBL35704.1| rRNA methylases [butyrate-producing bacterium SM4/1]
          Length = 281

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 12/244 (4%)

Query: 42  HTSQPE-NLFL-YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPP 98
           H  +PE  +F+      +  AL+     I  L+ TKN   +  +  A   H  PV T   
Sbjct: 35  HLYEPEPGIFIAESPKVIERALDAGYEPISLLMETKNVEGQGREVIARCGH-IPVYTAQF 93

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + ++ G +     L       +         ++ ++VL++V +P N+GAI RSA A  
Sbjct: 94  DVLTRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALG 153

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQKMHSWGFQT--IG 211
            D ++ T   S        + + G +  IP+      ++    +  + +   GF+T  + 
Sbjct: 154 MDAVLLTLGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMA 213

Query: 212 LSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           LS DS    E  + + +K+A+I+G EG+GL  +T   +  +  + M   + +LNV+ A+A
Sbjct: 214 LSDDSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASA 273

Query: 271 VALY 274
           VA +
Sbjct: 274 VAFW 277


>gi|255635868|gb|ACU18281.1| unknown [Glycine max]
          Length = 324

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 18/156 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193
           ++VLD + DP N+G +LRSAVAF  DG+          +    +++ GA   +P +  S 
Sbjct: 170 ILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALRASRGASFQLPVVSGSW 229

Query: 194 NLTDALQKMHSWGFQTIGLSSDSK-----KPLE-------QEIKNDKIALILGAEGKGLR 241
           N  ++L+K     FQ   L+   +     KP+          + +  + L+LG+EG GL 
Sbjct: 230 NHLESLKKE----FQMRFLAGHPEHEGLVKPVSSLSPSFCDSLSDTPLCLVLGSEGSGLS 285

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            K+ +T   +  + M G  ++LNVS A  + LY+ Q
Sbjct: 286 EKSLQTC-ELVSIAMTGEYESLNVSVAGGIFLYMLQ 320


>gi|224584503|ref|YP_002638301.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469030|gb|ACN46860.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|323130986|gb|ADX18416.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326628796|gb|EGE35139.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 349

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 199 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 257

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 258 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 317

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 318 CVKINGTGNVESLNVSVATGVLLAEWWRQN 347


>gi|206577025|ref|YP_002237077.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
 gi|206566083|gb|ACI07859.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
          Length = 361

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+GAI+RS   F   G++  +     ES    ++A G  E +  I   
Sbjct: 214 CVLALEDVGNPHNLGAIMRSCAHFGVKGVVV-QDAGVLESGAAIRTAEGGAERVEPITGD 272

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  D L +    G+  +  SS +  PL +     K+ L+LG E  GL      ++     
Sbjct: 273 SFIDTLDQFRKAGYAIVSTSSHNGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVA 332

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           ++  G +++LNVS A  V L  +  QN
Sbjct: 333 INGTGNVESLNVSVATGVLLAEWWRQN 359


>gi|212723624|ref|NP_001132172.1| hypothetical protein LOC100193597 [Zea mays]
 gi|194693648|gb|ACF80908.1| unknown [Zea mays]
          Length = 365

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 17/156 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 203 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTW 262

Query: 195 ------LTDALQKMHSWGFQTIGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLR 241
                 +T    KM +   ++   SSD+ K        L   + N+ + L+LG+EG GL 
Sbjct: 263 HDLHALVTKYRMKMMAGHPES---SSDASKETYSLSNELADSLLNESLCLVLGSEGNGLS 319

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +T + A  + ++ M G  ++LNVS A  + L++ Q
Sbjct: 320 AETLQ-ACELVNIPMEGTFESLNVSVAGGIFLFMLQ 354


>gi|192359318|ref|YP_001982265.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190685483|gb|ACE83161.1| RNA methyltransferase, TrmH family [Cellvibrio japonicus Ueda107]
          Length = 259

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +N+  L+ LD + +P N+G I+RSA A + DGI+   + +     ++ K+++G L   P 
Sbjct: 111 KNNYRLLALDGITNPQNLGMIIRSACAGNIDGILLPLKGAAQIDPLVIKASAGTLFRAPI 170

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +R  NL DAL+     G     LSS +   L           +LG E  G+     +  T
Sbjct: 171 LRCQNLVDALKDFSRHGASLCALSSHAHHNLSGFRPEGASIYVLGNETHGVSDPVFQLCT 230

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M   +++LNV+  AA+  +
Sbjct: 231 EKIKIPMNNGVESLNVAVTAALIAF 255


>gi|16761506|ref|NP_457123.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765968|ref|NP_461583.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140797|ref|NP_804139.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62181223|ref|YP_217640.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161612632|ref|YP_001586597.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167553664|ref|ZP_02347411.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994861|ref|ZP_02575951.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168245088|ref|ZP_02670020.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168823163|ref|ZP_02835163.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194448811|ref|YP_002046657.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197247519|ref|YP_002147552.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|198243831|ref|YP_002216663.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387404|ref|ZP_03214016.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205353691|ref|YP_002227492.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858002|ref|YP_002244653.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213161475|ref|ZP_03347185.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213646341|ref|ZP_03376394.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289812223|ref|ZP_06542852.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289825485|ref|ZP_06544692.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25325047|pir||AI0830 probable RNA methyltransferase STY2841 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421198|gb|AAL21542.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503807|emb|CAD05832.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136422|gb|AAO67988.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128856|gb|AAX66559.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161361996|gb|ABX65764.1| hypothetical protein SPAB_00327 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407115|gb|ACF67334.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197211222|gb|ACH48619.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197938347|gb|ACH75680.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604502|gb|EDZ03047.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205273472|emb|CAR38449.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321946|gb|EDZ09785.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327360|gb|EDZ14124.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205336134|gb|EDZ22898.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340551|gb|EDZ27315.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206709805|emb|CAR34157.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247846|emb|CBG25675.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994789|gb|ACY89674.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159199|emb|CBW18714.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913642|dbj|BAJ37616.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085531|emb|CBY95310.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321226003|gb|EFX51056.1| hypothetical tRNA/rRNA methyltransferase yfiF [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322715711|gb|EFZ07282.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|326624419|gb|EGE30764.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332989577|gb|AEF08560.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 345

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 313

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|331678578|ref|ZP_08379253.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H591]
 gi|331075038|gb|EGI46358.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H591]
          Length = 349

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 202 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 260

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 261 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 320

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 321 IDGTGNVAGLNISVATGVLLGEWWRQN 347


>gi|227833180|ref|YP_002834887.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454196|gb|ACP32949.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 266

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++P N G ++R++ A   DG+I            +A++++G+L HIP  R  N+ D L K
Sbjct: 127 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGK 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + S G Q +  ++D +  L +   +   A + G E  GL     E A     + + G  +
Sbjct: 187 LRSSGMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLGELLDE-ADMRVRIPILGRAE 245

Query: 262 ALNVSNAAAVALY 274
           +LN++ AA++ LY
Sbjct: 246 SLNLATAASICLY 258


>gi|331658726|ref|ZP_08359670.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA206]
 gi|315300563|gb|EFU59792.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 16-3]
 gi|331054391|gb|EGI26418.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA206]
          Length = 345

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAERDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|156059718|ref|XP_001595782.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980]
 gi|154701658|gb|EDO01397.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 600

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 125/304 (41%), Gaps = 81/304 (26%)

Query: 46  PENLFLYGVHTVSAALNN---PSRKIFQLLATKN----------ALARL----------- 81
           P + FLYG   V AALN     SRK+++L   K           AL RL           
Sbjct: 266 PASEFLYGTSVVEAALNTQRRKSRKLYKLYIHKGEDRHNGDRDGALTRLAQRKGVEVAIV 325

Query: 82  ---DWDANL-------PH------PFPVKTVPPQTIDKIVGKEAVHQGLALETAP----- 120
              DW   L       PH        P+  +P  ++  ++ +   +   A++ AP     
Sbjct: 326 RGQDWLRTLDKMSQGRPHNGYILEASPLPRLPVISLGSVIDQ---NDSFAIQLAPDHQSR 382

Query: 121 ----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                     +++   D+     L+++LD + DP N+GAILR+A+      +  + R S 
Sbjct: 383 EELEVNGNDTIINVPKDSTGRKPLVLLLDSIEDPQNLGAILRTALFMGVTAVAISVRNSA 442

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--SKKP--------- 219
           S + V+ K+++GA E I    ++     ++   + G++     +    +KP         
Sbjct: 443 SFTPVVFKASAGAAETIEIFSVNKPGGFIKDSQASGWKIYAAVAPPAPRKPDSRHMWPAA 502

Query: 220 ---------LEQEIKNDKIALILGAEGKGLRPKTQETAT---SMAHLHMPGIIKALNVSN 267
                    L+  ++ D   L++G EG+GLR   ++ A    S+    M G + +LNVS 
Sbjct: 503 SQEFVWSHKLQDPLREDPCILMVGGEGEGLRKNLRDLADVHISIKGASMRGKLDSLNVSV 562

Query: 268 AAAV 271
           A  +
Sbjct: 563 ATGM 566


>gi|323700776|ref|ZP_08112688.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. ND132]
 gi|323460708|gb|EGB16573.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           ND132]
          Length = 196

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 7/154 (4%)

Query: 126 LDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSAS 181
           +DAV   R   L +V+D++ DPHN+ A+LRS  AF   G+     Y+ S+   LA KS+ 
Sbjct: 13  IDAVLARRQKDLTLVMDNIWDPHNVSAVLRSCDAFGVAGVHLY--YTDSQWPDLALKSSG 70

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGL 240
            A + +      +  + + ++   G + +    SDS +P+         A+IL  E +G 
Sbjct: 71  SATKWVERTEHVDAAEMVAELKGRGMRVLRTGFSDSARPVMDFDFTKPTAIILSNEHRGT 130

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P          ++ M G++++ NVS AAA+ LY
Sbjct: 131 SPDLAALVPDEIYIPMQGMVQSFNVSVAAAIILY 164


>gi|182684908|ref|YP_001836655.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
 gi|182630242|gb|ACB91190.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           CGSP14]
          Length = 252

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 88  PQGIVAVVQKEEVGQ---------------ADLSQGKFLFLEDVQDPGNVGTIIRTADAA 132

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R+++  L D  +K+      T  LS D
Sbjct: 133 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETKKVAIPVLATT-LSKD 191

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ A  + ++
Sbjct: 192 SVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVATGILIF 249


>gi|218193529|gb|EEC75956.1| hypothetical protein OsI_13060 [Oryza sativa Indica Group]
          Length = 329

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +   N
Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVS-GN 227

Query: 195 LTDALQKMHSWGFQTIGLSSDS-----------KKPLEQEIKNDKIALILGAEGKGLRPK 243
            +D    M     + +    +S            K L   + ++ + L+LG+EG GL  +
Sbjct: 228 WSDLHALMAKPDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGSEGNGLSAE 287

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T + A  + ++ M G  ++LNVS A  + L++ Q 
Sbjct: 288 TLQ-ACELVNIPMQGTFESLNVSVAGGIFLFMLQT 321


>gi|166368966|ref|YP_001661239.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166091339|dbj|BAG06047.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 268

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 2/143 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL +VL+ + DP N+G I+R+AVA    GI  +      ++  + +S++G     P +  
Sbjct: 111 QLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSPLVVE 170

Query: 193 SNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           S+L+  ++K  + G + I  L + +K   E +     + ++LG EG GL P+    A   
Sbjct: 171 SDLSALVKKYQAQGVKAIATLPTATKSHWEIDFTRPTL-ILLGNEGAGLSPQLAALADET 229

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + + G +++LNV+ A AV LY
Sbjct: 230 VKIPLFGGVESLNVAIATAVILY 252


>gi|291087701|ref|ZP_06572067.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291074221|gb|EFE11585.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 297

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++ ++VL++V +P N+GAI RSA A   D ++ T   S        + + G +  IP+ 
Sbjct: 142 GARRIVVLENVMNPTNVGAIFRSAAALGMDAVLLTPGCSDPLYRRAVRVSMGTVFQIPWT 201

Query: 191 -----RISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRP 242
                ++    +  + +   GF+T  + LS DS    E  + + +K+A+I+G EG+GL  
Sbjct: 202 FFDGKKVKWPENGQELLREMGFKTAAMALSDDSVSIDEPALRREEKLAVIMGTEGEGLCA 261

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +T   +  +  + M   + +LNV+ A+AVA +
Sbjct: 262 QTIRESDYVVRIPMSHGVDSLNVAAASAVAFW 293


>gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
 gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
          Length = 246

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 3/146 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            ++ L+++LD + DP N+G I+R+A A   D ++         +  + ++  G++ HIP 
Sbjct: 99  EDNNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQGSIFHIP- 157

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I  + L   +  + + GF  +  +  D+ +  E  + N K+ LILG EG G+ P     A
Sbjct: 158 IYTATLEQEIHMLQTQGFTILATALHDAVEYTEVSVHN-KVGLILGNEGAGIAPSLLNKA 216

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
               ++ + G  ++LNV  AA + +Y
Sbjct: 217 NQRINIPIYGKAESLNVGIAAGILMY 242


>gi|15806040|ref|NP_294741.1| rRNA methylase [Deinococcus radiodurans R1]
 gi|6458745|gb|AAF10591.1|AE001953_5 rRNA methylase [Deinococcus radiodurans R1]
          Length = 265

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +K+ G+E  +    L  APL +P L    +  +++VL  +  P N+GAILR+A A    
Sbjct: 85  FEKVSGRE--NPDGVLGVAPLPAPRLPQPGDDTVVVVLHGLEKPGNVGAILRTADAAGAA 142

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++   R +      + +++ GA+  +P   +     AL  +    F+T+  + D+    
Sbjct: 143 GVLVLGRGADPYGPNVIRASQGAVFSVPTAVLGE-DAALGWLAEHNFRTVACTPDAPADY 201

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  ++AL+LG E  GL P     A     + M G   +LNV+ AAA+ LY
Sbjct: 202 WDTPLTGRVALLLGTEHAGL-PAEWRAAHQAVRVPMHGQADSLNVATAAALVLY 254


>gi|325068620|ref|ZP_08127293.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
          Length = 286

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL-------ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           PV   P + ++ I G   +H+G        AL   P L  +      ++ + +L+ + D 
Sbjct: 86  PVFVAPEEVLESITGFH-LHRGALAAMNRPALAGVPELLSSARGGAGARRVAILEDLVDH 144

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA  RSA A   D ++ T R +        + + G +  +P+ RI     A+ ++H+
Sbjct: 145 TNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWP-AMDELHA 203

Query: 205 WGFQTIGLS-SDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            GF    L+ SD+   L++          + ++A++LG EG GL  +T   A  +  + M
Sbjct: 204 QGFTVAALALSDTSVALDEFAASAACTGVDSRVAVVLGTEGDGLSHRTITAADEVVRIPM 263

Query: 257 PGIIKALN 264
            G + +LN
Sbjct: 264 AGGVDSLN 271


>gi|225164081|ref|ZP_03726364.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224801322|gb|EEG19635.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 252

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 17/194 (8%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           + V P  + KI G   +H G  +         APL        +    L++LD + + HN
Sbjct: 53  RCVEPAELAKIAGT--LHHGGVVAVVDEPALRAPLPREVRAWAKAGTPLLLLDRIGNAHN 110

Query: 147 IGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           +GAI R+A  F    II         P ESA   + A G LEH+   R+  L     ++H
Sbjct: 111 VGAIARTAAFFGVAHIIIPAHAFAALPGESA--HRIAEGGLEHLTLWRVPTLARFCAELH 168

Query: 204 SWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             G++ +G ++       P          AL+LG E  GL  +  +  T +  +   G I
Sbjct: 169 EAGYEVVGAATRGGALTLPALPGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKI 228

Query: 261 KALNVSNAAAVALY 274
           ++LNVS AAA+ ++
Sbjct: 229 ESLNVSAAAAILMF 242


>gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
 gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
          Length = 257

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD++ DP N+G I+R+A       +  +       +    +S  G++  +P++ + +
Sbjct: 111 FIVLDNLQDPGNLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIYRVPFVYVDD 170

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L K       T       K   ++E      A+++G EG GLR +  E A     +
Sbjct: 171 LLALLDKFQKKKVTTYAAHLKGKNTYDKENYQSGTAILIGNEGNGLRDEVAEKADVWVQI 230

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + AA++ ++
Sbjct: 231 PMQGKVESLNAAIAASILMF 250


>gi|154500722|ref|ZP_02038760.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
           29799]
 gi|150270611|gb|EDM97920.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
           29799]
          Length = 284

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     +  + G +     L     P+L    +    ++ + VL+ + D  N+GAI
Sbjct: 87  IPVYTGDNDLLAALTGYQVNRGILCAMRRPVLPTVEELCAGARRVAVLEGIVDSTNVGAI 146

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-----TDALQKMHSW 205
            RSA A   D ++ T            + + G +  IP+ RI +         L ++++ 
Sbjct: 147 FRSAAALHMDAVLVTPTCCDPLYRRAVRVSMGTVFQIPWTRIGDSPADWPEKGLSRLNAL 206

Query: 206 GFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF+T  ++ SD+   ++    +  DK+A++LG EG GL   T         + M   + +
Sbjct: 207 GFKTAAMALSDNSVSIDDPALMAEDKLAIVLGTEGDGLSHTTIAHCDYTVRIPMSHGVDS 266

Query: 263 LNVSNAAAVALY 274
           LNV+ A+AVA +
Sbjct: 267 LNVAAASAVAFW 278


>gi|56412529|ref|YP_149604.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361464|ref|YP_002141100.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56126786|gb|AAV76292.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092940|emb|CAR58370.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 345

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 195 DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 313

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|294625418|ref|ZP_06704050.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600293|gb|EFF44398.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 305

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 154 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 213

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   AL ++   GF       D  + +       ++  ++GAE +G+             
Sbjct: 214 DTATALAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 273

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 274 IRGSGKVESLNVASATAV 291


>gi|116513973|ref|YP_812879.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093288|gb|ABJ58441.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 291

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194
           VL+ V +P N+GAI RSA A   DG++ T   S        + + G +  +P+  +    
Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDQKL 200

Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +  +   GF+T  +     + D   P  +E   D++A+ILG+EG GL P+T   +
Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPALKEA--DRLAVILGSEGPGLLPQTIAES 258

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   + +LNV+ A+A+A +
Sbjct: 259 DYTIKIPMAEGVDSLNVAAASALAFW 284


>gi|213612386|ref|ZP_03370212.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 223

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ V +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 73  DQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 131

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 132 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDL 191

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 192 CVKINGTGNVESLNVSVATGVLLAEWWRQN 221


>gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund]
 gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund]
          Length = 261

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 110/248 (44%), Gaps = 13/248 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           +K ++  Q E   + G   V  AL   + KI  +L  ++A  + +   N+ +     T  
Sbjct: 19  RKKKYRVQEEKFLVEGFRFVEEALK-STFKISHVLVGESAKEKCN-SFNIFNIVSENTKI 76

Query: 98  PQTIDKIVGKEAVH----QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
               D+I+ KE       QG+    A + +  ++    S   ++ D V DP N+G I+RS
Sbjct: 77  SLVKDEIL-KELCETNNPQGI---IAIVDNKIINIEDKSGFYVLADKVQDPGNMGTIIRS 132

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I TK      +    +S  G++  IP I   N  + +  + S GF+ I  S
Sbjct: 133 ANASGALGVIVTKGTVDIYNDKTLRSTMGSIFKIPIIE-DNEFEIINVLKSKGFKLIVSS 191

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D++          K+ + +G EG G+  +          + MPG  ++LN   AA++ +
Sbjct: 192 LDTENNFFDIDLTGKVIICVGNEGNGVSDEVYSLGDEKVKIPMPGNAESLNAGVAASIMM 251

Query: 274 Y--ITQNH 279
           Y  + QNH
Sbjct: 252 YEVVRQNH 259


>gi|295091750|emb|CBK77857.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
          Length = 274

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 80/152 (52%), Gaps = 8/152 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++ ++VL++V +P N+GAI RSA A   D ++ T   S        + + G +  IP+ 
Sbjct: 119 GARRIVVLENVMNPTNVGAIFRSAAALGMDAVLLTPGCSDPLYRRAVRVSMGTVFQIPWT 178

Query: 191 -----RISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRP 242
                ++    +  + +   GF+T  + LS DS    E  + + +K+A+I+G EG+GL  
Sbjct: 179 FFDGKKVKWPENGQELLREMGFKTAAMALSDDSVSIDEPALRREEKLAVIMGTEGEGLCA 238

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +T   +  +  + M   + +LNV+ A+AVA +
Sbjct: 239 QTIRESDYVVRIPMSHGVDSLNVAAASAVAFW 270


>gi|289167184|ref|YP_003445451.1| rRNA/tRNA methylase [Streptococcus mitis B6]
 gi|288906749|emb|CBJ21583.1| rRNA/tRNA methylase [Streptococcus mitis B6]
          Length = 246

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 23/181 (12%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q             +D  +     + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ-------------VDLSQGK--FLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I +++ +   S    +S  G+  H+P  R+S  + AL K        +  ++ SK
Sbjct: 127 GFTGVIVSEKSADIYSLKTLRSMQGSHFHLPIYRMS--SQALLKETKEAAIPVLATTLSK 184

Query: 218 KPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             ++      I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + +
Sbjct: 185 DSVDYRELPPIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILI 242

Query: 274 Y 274
           +
Sbjct: 243 F 243


>gi|238918595|ref|YP_002932109.1| methyltransferase [Edwardsiella ictaluri 93-146]
 gi|238868163|gb|ACR67874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 357

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 7/155 (4%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           DAV     ++ L++V +PHN+G I+R+   F   GII  +  +  ES    ++A G  EH
Sbjct: 205 DAV---DCVLALENVANPHNLGGIMRTCAHFGIRGIIAPE-SAALESGAAVRTAEGGAEH 260

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  I   + +  L      G+  +  SS      L + +   KI L++G EG GL   T 
Sbjct: 261 VQAIDAEDFSATLDTFRRAGYTIVTTSSHKGTTQLHRAVLPAKIVLVVGHEGDGLSDGTL 320

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +       +   G +++LNVS A  + L  +  QN
Sbjct: 321 QQGDLSISIGGTGSVESLNVSVATGIMLAEWWRQN 355


>gi|110806525|ref|YP_690045.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|110616073|gb|ABF04740.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 345

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRMK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|222151576|ref|YP_002560732.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
          Length = 246

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 122/295 (41%), Gaps = 62/295 (21%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I   +++KI  +   H      N +D KKMQ F              + G H V  A
Sbjct: 1   MEIIESIQNQKIKQIAKLH------NRKDRKKMQQF-------------IIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +N  S    +++ T N                    P +  + +V        +  + A 
Sbjct: 42  VN--SNIDIEMILTVN--------------------PDRLTEAMVAGSKQQYEITFKVAE 79

Query: 121 LLSPT-----LDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            LS T     + AV N +         ++ LD + DP N+G I+R+A A   D +I  K 
Sbjct: 80  KLSQTEAPQGIYAVCNMKDGKDAELNRVIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKG 139

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                +  + +++ G++ HIP I + +  +   K +   +   G S +  +  ++ I +D
Sbjct: 140 TVDIYNDKVLRASQGSVFHIPVIEM-DFDEVSSKFNGTIY---GTSLEEARDYKEVIPSD 195

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              ++LG EG+G+ P+         ++ + G  ++LNV+  A + +Y    HF K
Sbjct: 196 NFMIVLGNEGQGVNPEILSATDENLYIPIYGRAESLNVAVCAGILMY----HFVK 246


>gi|32267245|ref|NP_861277.1| hypothetical protein HH1746 [Helicobacter hepaticus ATCC 51449]
 gi|32263298|gb|AAP78343.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 229

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYS 169
           HQG+     P    +L+ +++   L+VL +V D  NIG+I R+A A    G +I     S
Sbjct: 61  HQGILASIIPPSPLSLNDLKSKDSLLVLYNVTDVGNIGSIFRTAYALGVGGVVICLSNLS 120

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                 +A+ +SGA  H+PY    ++ D + ++ +  F  IG  +D +      +K  K 
Sbjct: 121 QKAIESIARLSSGAFLHMPYGVFPHIFDIINELKNADFMLIG--ADMQGQESCNVKK-KW 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  + +    ++  + M     +LNV+ A  + +
Sbjct: 178 ALFLGSESEGLSARLKHKLDTILSIKMEHHFDSLNVAVATGILI 221


>gi|323693749|ref|ZP_08107946.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323502200|gb|EGB18065.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 266

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           LM+L+ + DP N+G ILR+       G++    T   Y+P     + +S  G++  +P++
Sbjct: 119 LMILETIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPK----VIRSTMGSIYRVPFV 174

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + +   AL ++ + G +        K   E E        ++G E  GL  +T   A  
Sbjct: 175 YVEDWQQALGRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADC 234

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M G +++LN + AA++ ++ T
Sbjct: 235 YVRIPMAGQVESLNAAVAASILMFET 260


>gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437]
          Length = 263

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 10/181 (5%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           P T  ++V  +   QG+A E     +     +R  + +++LD + DP N+G ILR+A A 
Sbjct: 79  PSTFAQLVDTQT-PQGIAAEVVVPENKEGYRIRGEEPVLLLDAIRDPGNLGTILRTAEAA 137

Query: 158 SCD----GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
                  G  T   ++P     + +SA G+L     IR  +L +A+ ++   G+  +G S
Sbjct: 138 GVGDVWLGAGTVDPFNPK----VVRSAMGSLFRT-RIRRVDLREAIPELKKQGYWVVGTS 192

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +++         + A++LG EGKG+  +          + MPG +++LNVS  A + L
Sbjct: 193 PRAERAHFDCHYPKQTAILLGNEGKGISAEIDSLVDDRVKIPMPGQVESLNVSVTAGILL 252

Query: 274 Y 274
           +
Sbjct: 253 F 253


>gi|104773970|ref|YP_618950.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423051|emb|CAI97747.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125661|gb|ADY84991.1| Putative rRNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 291

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194
           VL+ V +P N+GAI RSA A   DG++ T   S        + + G +  +P+  +    
Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDRKL 200

Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +  +   GF+T  +     + D   P  +E   D++A+ILG+EG GL P+T   +
Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPALKEA--DRLAVILGSEGPGLLPQTIAES 258

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   + +LNV+ A+A+A +
Sbjct: 259 DYTIKIPMAEGVDSLNVAAASALAFW 284


>gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
           700633]
 gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
           700633]
          Length = 252

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 118/253 (46%), Gaps = 17/253 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDAN 86
           ++Y+K+Q+    S+   + E   + G H V  A+ + +  I +L+ +++ +   + W  +
Sbjct: 13  KNYQKLQT----SKGRKKSEAYMIEGEHLVEEAIQS-NISIQRLVVSEDTIQFYEKWTKS 67

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
            P  F  K V  +     +     +QG+ L   PL    L  V   + L+  D V DP N
Sbjct: 68  YPTMFVSKEVFEK-----LSMTQTNQGI-LAIVPLEKKPLVEVPQGRYLLA-DAVQDPGN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--HS 204
           +G I+R+A A   D ++  +      +  + +S  G+  H+  I   NL D   K+  + 
Sbjct: 121 LGTIIRTADAAGFDAVVLGEGCVDLYNDKVVRSMQGSQFHVA-IYHENLMDVYGKLKEND 179

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                  L  D+K   +     D +A+++G EG G+R +  E+A  +  + M G  ++LN
Sbjct: 180 IPIAVTALHRDAKD-FKWLTGRDSVAIVVGNEGNGVRDELIESADFIIQIPMFGQAESLN 238

Query: 265 VSNAAAVALYITQ 277
           V+ A  V +Y T+
Sbjct: 239 VAIATGVLMYQTR 251


>gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
           DSM 574]
          Length = 264

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           L++V+D V DP N+G I+RSA A    G++    T   Y+P       ++  G+L H+P 
Sbjct: 117 LVVVVDGVQDPGNLGTIVRSADAAGASGVLLLKGTVDIYNPKT----IRATMGSLFHLPV 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  ++  AL  + S G   I       +P+ +      +A+++G EG G R        
Sbjct: 173 VKAEDVDGALAYLASAGVTLIVGDPVLGEPIFKANLKVPVAIMVGNEGAGPRADLDRFKH 232

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
              ++ MPG  ++LNV+ A ++ LY
Sbjct: 233 VKVNIPMPGRAESLNVAMATSIMLY 257


>gi|319442536|ref|ZP_07991692.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 281

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 91/196 (46%), Gaps = 11/196 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146
           P+  V  + + ++ G + +H+GL      +  PT+  V      +++++ VL+ V D  N
Sbjct: 86  PIYEVSREVLAEVAGFD-MHRGLVAAADRVGEPTVGEVLDGLDEDNRVIGVLEGVGDHEN 144

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKM 202
           IGA+ R+A       ++     +      + + + G +  +P+  +    +     L  +
Sbjct: 145 IGALFRNAAGLGVGAVLLGAGCADPLYRRVVRVSMGHVLRVPFAHVPGKPTTWQRGLADL 204

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              G++ + ++ ++   L   ++  DK+A+++GAEG GL       A   A + M     
Sbjct: 205 QERGYRVVAMTPNTDNTLADAVRGADKVAVMVGAEGPGLTEHAMRAADVRAKIPMSPGTD 264

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+ +AAV  Y  Q
Sbjct: 265 SLNVATSAAVGFYAAQ 280


>gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC
           13950]
          Length = 281

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           + +  ++ + VL+ VND  N+G+I R+A     D ++     +        + + G    
Sbjct: 117 EVIAGARTVAVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALL 176

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI---KNDKIALILGAEGKGLRP 242
           +PY R +     L  +   GF+ + ++  +S  PL + +   + +++A+++GAEG GL P
Sbjct: 177 VPYARATCWPAELMTLKENGFRLLAMTPHESACPLAEAMTAARGERVAVLVGAEGPGLTP 236

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            T   +     + M     +LNV+ AAA+A Y
Sbjct: 237 ATLRCSDVRVRVPMSRGTDSLNVATAAALAFY 268


>gi|13174243|gb|AAK14417.1|AC087851_9 putative RNA methyltransferases [Oryza sativa Japonica Group]
 gi|222625582|gb|EEE59714.1| hypothetical protein OsJ_12143 [Oryza sativa Japonica Group]
          Length = 329

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +   N
Sbjct: 169 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVS-GN 227

Query: 195 LTDALQKMHSWGFQTIGLSSDS-----------KKPLEQEIKNDKIALILGAEGKGLRPK 243
            +D    M     + +    +S            K L   + ++ + L+LG+EG GL   
Sbjct: 228 WSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGSEGNGLSAD 287

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T + A  + ++ M G  ++LNVS A  + L++ Q 
Sbjct: 288 TLQ-ACELVNIPMQGTFESLNVSVAGGIFLFMLQT 321


>gi|311069356|ref|YP_003974279.1| putative RNA methylase [Bacillus atrophaeus 1942]
 gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942]
          Length = 248

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D++ + + L+++D V DP N+G ++R+A A   D ++       + +    +SA G+  H
Sbjct: 98  DSLTSYKRLLLIDAVQDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSAQGSHFH 157

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP ++  NL   ++++ + G +  G S  +    ++       ALI+G EG G+     E
Sbjct: 158 IPIVK-RNLHVFIEELKASGVKVYGTSLQNGSAFQETAPIGSFALIVGNEGAGVDSAILE 216

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ + G  ++LNV+ AAAV LY
Sbjct: 217 KTDLNLYVPLYGQAESLNVAIAAAVLLY 244


>gi|323126636|gb|ADX23933.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 245

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           ++L+ V DP N+G I+R+A A   DG+  +++ +   ++   +S  G+  H+P  R  I 
Sbjct: 104 LILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLPIWRTDIY 163

Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +   +Q+ ++    T    +S D K    QE      AL++G EG+G+  +    A  +
Sbjct: 164 KICREMQEHNTPVLATTLSKVSVDYKTVPHQE----SFALVMGNEGQGISAEMTILADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|320528151|ref|ZP_08029316.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
 gi|320131499|gb|EFW24064.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
          Length = 238

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 97/200 (48%), Gaps = 12/200 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-LPHPFPVKTVPPQTIDK---- 103
           + L G  +V AA+    RK+ +L   K+   + D D N + H    K +P   +++    
Sbjct: 1   MLLEGNVSVKAAILGNHRKVEKLYYDKH---KNDKDLNFILHRAMEKEIPCMPLEREEIN 57

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +     H GL  E +P +   L    + +   L++L+ V DP N+G I+R+  +  CDG
Sbjct: 58  AMAAGRTHGGLVAEASPRIYQELSECMHGKTPFLVLLEGVEDPFNLGYIIRTLYSAGCDG 117

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPL 220
           +I  +    S  + +AKS++GA E++  +   +L   ++ +   G +T   +  D+   L
Sbjct: 118 LILPRHDWASAESTIAKSSAGAFEYMNIVMSDDLPKLVKDIKKQGIKTYAAMRKDAITYL 177

Query: 221 EQEIKNDKIALILGAEGKGL 240
           E + +   + L +G E +GL
Sbjct: 178 EADYRQPCL-LAIGGEMRGL 196


>gi|115454647|ref|NP_001050924.1| Os03g0685100 [Oryza sativa Japonica Group]
 gi|108710455|gb|ABF98250.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113549395|dbj|BAF12838.1| Os03g0685100 [Oryza sativa Japonica Group]
 gi|215765471|dbj|BAG87168.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 340

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +   N
Sbjct: 180 ILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVS-GN 238

Query: 195 LTDALQKMHSWGFQTIGLSSDS-----------KKPLEQEIKNDKIALILGAEGKGLRPK 243
            +D    M     + +    +S            K L   + ++ + L+LG+EG GL   
Sbjct: 239 WSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGSEGNGLSAD 298

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T + A  + ++ M G  ++LNVS A  + L++ Q 
Sbjct: 299 TLQ-ACELVNIPMQGTFESLNVSVAGGIFLFMLQT 332


>gi|15803108|ref|NP_289139.1| putative methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|25325044|pir||E85904 hypothetical protein yfiF [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517002|gb|AAG57697.1|AE005488_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 345

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++  +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENEXNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|227329037|ref|ZP_03833061.1| putative methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 383

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ V +PHN+G I+RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 236 CVLALEDVGNPHNLGGIMRSCAHFGVKGVLV-QDAALLESGAAVRTAEGGAEHVKAINAD 294

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L +  + G+  +  SS     L +     K  ++LG EG GL     +       
Sbjct: 295 DFLSVLTEFRNAGYTIVTTSSHKGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVS 354

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           +   G +++LN+S A  + L  +  QN 
Sbjct: 355 IGGTGKVESLNISVATGILLSEWWRQNQ 382


>gi|322377611|ref|ZP_08052101.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
 gi|321281376|gb|EFX58386.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
          Length = 252

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 6/143 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + L+ V DP N+G I+R+A A    G+I + + +   S    +S  G+  H+P  R+S+
Sbjct: 110 FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSS 169

Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSM 251
               L+K    G   +   LS DS    E   I+N    L++G EG+G+     E+A  +
Sbjct: 170 QA-LLEKAKKAGISVLATTLSKDSVDYRELPPIEN--FVLVMGNEGQGISSLMAESADQL 226

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ M G  ++LNV+ AA + ++
Sbjct: 227 VHISMKGQAESLNVAVAAGILIF 249


>gi|319901467|ref|YP_004161195.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319416498|gb|ADV43609.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 267

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 82/151 (54%), Gaps = 6/151 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  ++++ +++++ V D  NIGAI RSA A   D ++ T       +    + + G++  
Sbjct: 114 EVCQDARRIVIINGVVDTTNIGAIFRSAAALGIDAVLLTHNSCDPLNRRAVRVSMGSVFL 173

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPK 243
           +P+  I N   +L  +   GF+T+ ++ +++  P++  I +   K+A+I+G EG GL  +
Sbjct: 174 VPWTWIDN---SLSDLCGLGFRTVAMALTENSIPIDNPILSSEPKLAIIMGTEGDGLPYE 230

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A  +  + M   + +LNV+ A+A+A +
Sbjct: 231 AITEADYVVRIPMSHGVDSLNVAAASAIAFW 261


>gi|306824475|ref|ZP_07457821.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433262|gb|EFM36232.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 246

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 24/215 (11%)

Query: 66  RKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
            KIF L + ++ LA      W +         T  PQ I  ++ KE V            
Sbjct: 47  EKIFALESYRDQLAAFPQTVWVSEEVLLDLADTQTPQGIVAVIQKEEV------------ 94

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              L   R  + L  L+ V DP N+G ++R+A A    G+I + + +   S    +S  G
Sbjct: 95  --GLPDFRQGKFLF-LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQG 151

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLE-QEIKNDKIALILGAEGKG 239
           +  H+P  R+S L   +++        +   LS DSK   E   I+N   AL++G EG+G
Sbjct: 152 SHFHLPIYRMS-LASFVEEAKKSNLPILATTLSKDSKDYHELSPIEN--FALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|149372809|ref|ZP_01891830.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
 gi|149354506|gb|EDM43071.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
          Length = 170

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + ++ DH++ P N GA+ R   AF  + II        +S+ L ++A    + IPY  +S
Sbjct: 19  ITVICDHLDSPANQGALFRVCEAFGVNNIIFFGNTIDIKSSRLKRTARSTEKLIPYSCVS 78

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           ++ + +  +     + IGL   S     QE+  D    IALI+G+E  G+     +   S
Sbjct: 79  DIKETIATLKQNNTRLIGLEITSDSAAIQELTIDTQTSIALIIGSEKHGISEDILQYLDS 138

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           + H+ M G   ++NV  +  +ALY
Sbjct: 139 VYHITMFGNNSSMNVIQSTGIALY 162


>gi|253681735|ref|ZP_04862532.1| rRNA methylase [Clostridium botulinum D str. 1873]
 gi|253561447|gb|EES90899.1| rRNA methylase [Clostridium botulinum D str. 1873]
          Length = 260

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +++D + DP N+G I+RSA A    G+ITTK      +    +S  G++  IP I  +
Sbjct: 113 FYVLVDRIQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLRSTMGSIFKIPIIEDN 172

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N    L+ + S GF+ +  S D++          K  + +G EG G+     E       
Sbjct: 173 NFQ-ILKILKSKGFKLVVSSLDTENNFYDIDLTGKSIICVGNEGNGVSDYIYELGDEKVK 231

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LN   AA++ +Y
Sbjct: 232 IPMPGDAESLNAGVAASIMMY 252


>gi|126632662|emb|CAM56560.1| novel protein similar to vertebrate mitochondrial rRNA
           methyltransferase 1 homolog (S. cerevisiae) (MRM1)
           [Danio rerio]
          Length = 206

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 28/211 (13%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            ++GV     AL    R    L         ++A+ R+  +A +     +K V  QT++K
Sbjct: 1   IVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEA-IRRGVQIKRVNKQTLEK 59

Query: 104 IV-GKEAVHQGLAL---------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +  GK  VHQGL L         E  P+ S  L+      L +VLD V DP N+GAILRS
Sbjct: 60  MCDGK--VHQGLCLQASCLGFIKEERPITS--LEVKNQRPLWLVLDGVQDPMNLGAILRS 115

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ---TI 210
           A     D I+++   S   +  ++K+++G +E +     SNL   ++     G+Q   T+
Sbjct: 116 AYYLGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGWQVVGTV 175

Query: 211 GLSSDSKKPLEQEIKNDKIA----LILGAEG 237
           GL   S +       + K++    L++G EG
Sbjct: 176 GLEEGSSQSNVLSCSDFKMSRPTLLLMGGEG 206


>gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
 gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
          Length = 259

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 72/141 (51%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            LMVL+++ DP N+G ILR+       G++ ++  +   +  + +S  G++  +P++   
Sbjct: 111 FLMVLENIQDPGNLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSVFRVPFVYTE 170

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L  +L+ + + G +      + +   E+E        ++G E  GL  +T   A +   
Sbjct: 171 DLPASLKALKAGGVRLYAAHLNGRNNYEKEDYTVDTGFLVGNEANGLTDETAALADACVK 230

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + AA+V ++
Sbjct: 231 IPMKGKVESLNAAVAASVLMF 251


>gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
 gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
          Length = 288

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 23/159 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS----GALEHIP-- 188
           + +L++V +P N+GAI RSA A + + ++     SP  S  L + AS    G +  IP  
Sbjct: 127 IAILENVQNPTNVGAIFRSAAALNMEAVL----LSPGCSDPLYRRASRVSMGTVFQIPWT 182

Query: 189 YIRISNLT----------DALQKMHSWGFQT--IGLSSDSKKPLEQEI-KNDKIALILGA 235
           +IR SN             A+ ++   G++T  + L+ DS    + E+ K +K+A+ILG 
Sbjct: 183 FIRDSNEMRCKREVIWPKQAIAELKKLGYKTAALALTDDSVSIDDSELMKEEKLAVILGN 242

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           EG+GL  +T         + M   + +LNV+ A+AVA +
Sbjct: 243 EGEGLENETIALCDYTVKIPMTHGVDSLNVAAASAVAFW 281


>gi|298530210|ref|ZP_07017612.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509584|gb|EFI33488.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 197

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 6/156 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+++++DPHN+ AILRS  AF+   +       P    V  KS++ A + +  
Sbjct: 21  RQRDLTLVMNNIHDPHNVSAILRSCDAFAVPDVHLLYVGQPF-PEVGRKSSASARKWVRR 79

Query: 190 IRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           IR  +  + +Q++   G   I  G    S    E +      A+ILG E  G++   ++ 
Sbjct: 80  IRHRDAGEMVQRLEGQGLCLIRTGFGPQSISLPEWDFTR-PTAVILGNEHSGVQEDLEQM 138

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
                ++ M G++++LNVS AAAV LY    Q H A
Sbjct: 139 VAQEIYIPMQGMVQSLNVSVAAAVILYEAFRQRHQA 174


>gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
           ES-2]
 gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
           ES-2]
          Length = 258

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  ++  ++L+ V DP N+G++LRSA A  CD +  +   + + S  + ++A G   H  
Sbjct: 107 IVTARFALLLEAVQDPGNLGSMLRSAAAAGCDAVFLSPACADAWSPKVLRAAMGG--HF- 163

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            + I    D  +    +  + +  +  +   L        IA ++G EG GL P+ +  A
Sbjct: 164 CLAIYEQQDLFKVAQGYSGKLLATTLQATDSLFDCDLTGNIAFMVGNEGAGLTPELRALA 223

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T    + MPG +++LN + A A+ L+
Sbjct: 224 THPVTIPMPGAVESLNAAAATAICLF 249


>gi|262184166|ref|ZP_06043587.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 285

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++P N G ++R++ A   DG+I            +A++++G+L HIP  R  N+ D L K
Sbjct: 146 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGK 205

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + S G Q +  ++D +  L +   +   A + G E  GL     E A     + + G  +
Sbjct: 206 LRSSGMQVLATAADGEVDLAEADLSQPTAWLFGNEAHGLGELLDE-ADMRVRIPILGRAE 264

Query: 262 ALNVSNAAAVALY 274
           +LN++ AA++ LY
Sbjct: 265 SLNLATAASICLY 277


>gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
 gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
          Length = 261

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 27/261 (10%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNA--LA 79
           R++  YK +   +  +R   +     L G H + A L+N  +    LL   A ++A  +A
Sbjct: 10  RDNPFYKSLHRISSSARERREAGQTLLDGSHLLRAFLDNGGKPKHLLLNEQAQQDAEIVA 69

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQ 133
            LD   ++P          Q  D +  + +      L+T   L   +D       V +SQ
Sbjct: 70  LLDACVDVPQT--------QFEDALFAQLS-----ELKTPNGLLALIDIPAAQVEVAHSQ 116

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++L+ + DP N+G+ILRSA A  CD +  +   + + S  + ++  G   H   + I 
Sbjct: 117 FALLLEDIQDPGNLGSILRSAAAAGCDAVFMSPGCADAWSPKVLRAGMGG--HFA-LSIL 173

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              D L+    +  + +  S  ++K L       K+A  +G EG GL P+    A     
Sbjct: 174 ESADLLKVATGFTGKILAASLHARKSLYDCNLRGKLAFAIGNEGAGLSPELLTAAQQHFI 233

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I++LN + A AV L+
Sbjct: 234 IPMQGKIESLNAAAATAVCLF 254


>gi|311746904|ref|ZP_07720689.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
 gi|126578593|gb|EAZ82757.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
          Length = 234

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEH 186
           A R     +VL+++  PHN  A+LR+   F    + I  K      +  + + AS  L  
Sbjct: 34  AQRTRHFTVVLENIYKPHNASAVLRTCDCFGIQDVHIIEKTREYKVNPFVTRGASQWLTL 93

Query: 187 IPYIRISN----LTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLR 241
             Y +       + +    + S GF+  G S D + +P++    N+KIAL+ G E +G+ 
Sbjct: 94  HKYFQPEEPENAVINCFSSLKSNGFKIYGTSPDPQTRPIQDLDPNEKIALVFGNEHEGIS 153

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + +  A  + H+ M G  ++ N+S AA++ L
Sbjct: 154 NEVKNAADGLVHIPMRGFTESFNISVAASLFL 185


>gi|227504260|ref|ZP_03934309.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
 gi|227199147|gb|EEI79195.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
          Length = 270

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150
           P+  V  +T+ ++ G + +H+GL         PTL+ + R ++ ++VL+ V D  NIGAI
Sbjct: 71  PMYEVTRETLAQVAGFD-MHRGLVAAADRAAEPTLEEILRTAKTVVVLEGVGDHENIGAI 129

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-------LQKMH 203
            R+A     D ++     S +   +  +S   ++ H+  +  ++L          LQ + 
Sbjct: 130 FRNAAGMDVDAVLLG---SGAADPLYRRSVRVSMGHVLRLPFAHLDGGYTTWQRSLQVLR 186

Query: 204 SWGFQTIGLSSDSKKP-LEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              F+ + L+   +   L Q +   +K+AL++GAEG GL     +     A + M     
Sbjct: 187 DANFRLVSLTPHPEAVHLAQALHGAEKVALLVGAEGPGLTEHAMKATDVRARIPMAPGTD 246

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ +AA+A Y  Q 
Sbjct: 247 SLNVATSAAIAFYERQR 263


>gi|266624299|ref|ZP_06117234.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
 gi|288863863|gb|EFC96161.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
          Length = 259

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 8/145 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           LLM+LD + DP N+G ILR+       G+I    T   Y+P     + +S  G++  +P+
Sbjct: 111 LLMILDTIQDPGNLGTILRAGEGAGITGVIMNDTTADIYNPK----VIRSTMGSVCRVPF 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +  + L   L  +   G +      + +   E+E        ++G E  GL  +T   A 
Sbjct: 167 VYTAALPQTLANIKKRGVRLYAAHLEGRNNYEKEDYTVDTGFLIGNEANGLSSETASMAD 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +   + M G +++LN + AA+V ++
Sbjct: 227 AYVKIPMMGKVESLNAAVAASVLMF 251


>gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
 gi|156865178|gb|EDO58609.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
          Length = 268

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 114/264 (43%), Gaps = 34/264 (12%)

Query: 32  KMQSFNQKSRHTS--QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           K+++ N+ +++ S  + E +F+  V  +      P  ++ Q+  ++ A  R  +   LP 
Sbjct: 11  KIKNINKLNKNASFRKEEQVFI--VEGIRMFRELPVDRVKQVFVSETAYQR--YGTELPE 66

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---------------LSPTLDAVRNSQL 134
               K +  Q    +V  ++V + ++    P                L   +D   N   
Sbjct: 67  ----KGITEQDRRLVVVSDSVFRSMSQTKTPQGLLAVVERYHYTMEDLISVMDKRENGNT 122

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
            +VL+ + DP N+G I+R+A A    GII    +   Y+P     + +S  G +  +P++
Sbjct: 123 FLVLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDIYNPK----VVRSTMGTIFRVPFV 178

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + +   A+ ++   G    G   D       ++K +  A ++G EG GL  +    A  
Sbjct: 179 YVDDPAKAVDRLKEHGIVVYGAHLDGCDLYAGKLKRNN-AFLIGNEGNGLTDELSSKADR 237

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  + M G +++LN + +A +  Y
Sbjct: 238 LLRIPMAGQVESLNAAISATLLAY 261


>gi|54023885|ref|YP_118127.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54015393|dbj|BAD56763.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 279

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 2/147 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+ +LL V   + +P N G ++R A A   DG++         +    ++++G+L H+P 
Sbjct: 120 RDPRLLAVPVEIAEPGNAGTLIRVADAVGADGVVLAGHTVDPHNGKCVRASAGSLFHVPV 179

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQET 247
           +R   +   L  +H+ G   +  ++D +  L++  EI    +A + G E  GL P     
Sbjct: 180 VRGREVVPTLDALHAAGLTLLATAADGEVVLDEADEILAGPVAWLFGNEAHGLDPAVAAR 239

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + + G  ++LN++ AAA+ LY
Sbjct: 240 ADHRVRIPIHGRAESLNLAAAAAICLY 266


>gi|313206520|ref|YP_004045697.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445836|gb|ADQ82191.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315023539|gb|EFT36543.1| RNA methylase, SpoU family protein [Riemerella anatipestifer RA-YM]
 gi|325336032|gb|ADZ12306.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 176

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T      + L++VLD++   HN+GA+ R+A AF  + I+            + K+A GA 
Sbjct: 17  TFKKTSKTPLVVVLDNIRSMHNVGALFRTADAFLIEKIVLCGITPQPPHREIHKAALGAT 76

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIK-NDKIALILGAEGKGLR 241
           E + ++   ++++A++++ + G+  IG+  ++DS    + EI  N K AL+LG E +GL 
Sbjct: 77  ESVDWVYQKDISEAIKELKTQGYNIIGVEQTTDSISLSDFEINPNQKYALVLGNEVEGLS 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +      +   +   G   +LNVS    + ++
Sbjct: 137 DEALPLYDNFIEIPQLGTKHSLNVSVCGGIVIW 169


>gi|317138163|ref|XP_001816718.2| hypothetical protein AOR_1_376184 [Aspergillus oryzae RIB40]
          Length = 351

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 130/324 (40%), Gaps = 95/324 (29%)

Query: 37  NQKSRHTSQPE---NLFLYGVHTVSAALNNPSRKIFQLL----------ATKNALARL-- 81
            Q  R+T+ P+     F+YG   V AAL    R +++L           + K AL +L  
Sbjct: 17  EQNQRNTTVPQREYQKFIYGTSAVEAALRCSRRHMYKLYVYQASGEELSSAKVALRKLAL 76

Query: 82  -----------DWD-------ANLPH--------PFP------VKTVPPQTIDKIVGKEA 109
                       WD       A  PH        P P      +K+VP    +       
Sbjct: 77  SKNVKVKMAFGGWDRLLDKMSAGRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDF----G 132

Query: 110 VHQGLALETAPLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           V  G       L++ T D ++           ++++LD + DP N+GAI+RSA     D 
Sbjct: 133 VELGAQSREEALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDA 192

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKKP 219
           II   R S   S V  K+++GA E++  + +SN  D +Q  K + W F     ++D+  P
Sbjct: 193 IIFAGRNSAPLSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKF----YAADAPGP 248

Query: 220 LEQEIKNDKI------------------ALILGAEGKGLRPKTQETATSM-----AHLHM 256
             + +    I                   +++G+EG GL    +  A S+     A L  
Sbjct: 249 ASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLAT 308

Query: 257 P-GI------IKALNVSNAAAVAL 273
           P G+      + +LNVS AAA+ +
Sbjct: 309 PLGVESDPSRVDSLNVSVAAALLM 332


>gi|86153786|ref|ZP_01071989.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613667|ref|YP_999878.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004845|ref|ZP_02270603.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85842747|gb|EAQ59959.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87250040|gb|EAQ72998.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 227

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            F +K +  +T  +   K   HQG  L+        L+ ++ +  +++L  ++D  NIGA
Sbjct: 41  GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A A     +I        E  +  +++SGA   +P +  ++    + ++   GF  
Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                  K+    +I N K  L+LG+EG GL  K  +       + M     +LNVS A 
Sbjct: 158 YASDGSGKEIHSVKINNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217

Query: 270 AV 271
           A+
Sbjct: 218 AI 219


>gi|255283672|ref|ZP_05348227.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255265737|gb|EET58942.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 277

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 8/191 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T     + K+ G       L     P L    +    ++ + VL++V +P N+GAI 
Sbjct: 80  PVYTADFDVLTKLTGFALTRGVLCAMRRPPLPSVREVCSGARRIAVLENVMNPTNVGAIF 139

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHSWG 206
           RSA A   D ++ T   S        + + G +  IP+  ++     +    ++ + S  
Sbjct: 140 RSAAALGMDAVLLTPDCSNPLYRRSIRVSMGTVFQIPWTWLTAKETQHFPSYVRFLKSLC 199

Query: 207 FQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F T  ++ +DS  P+  +     +K+A+ILG+EG GL   T         + M   + +L
Sbjct: 200 FGTAAMALTDSSIPVSDQRLAGEEKLAVILGSEGDGLSAATLADCDYTVRIPMAHGVDSL 259

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 260 NVAAASAVAFW 270


>gi|270607381|ref|ZP_06221632.1| rRNA methylase [Haemophilus influenzae HK1212]
 gi|270318140|gb|EFA29373.1| rRNA methylase [Haemophilus influenzae HK1212]
          Length = 105

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 7/106 (6%)

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHS----WGFQTIGLSSDSKKPLEQEIKNDK 228
           +++  K A GA E +P IR++NL+  L+ +      W    +G + ++ + + Q      
Sbjct: 1   TSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW---VVGTAGEATETIYQSKLTGP 57

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 58  LALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLF 103


>gi|260171370|ref|ZP_05757782.1| putative SpoU-like rRNA methylase [Bacteroides sp. D2]
 gi|315919681|ref|ZP_07915921.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693556|gb|EFS30391.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 280

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 7/155 (4%)

Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           P+++ V R ++ ++V++ V D  NIG I RSA A   D I+ T+      +    + + G
Sbjct: 110 PSVEEVCRKARRIVVIEGVVDATNIGTIFRSAAALGIDAILLTRNSCDPLNRRAVRVSMG 169

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI--KNDKIALILGAEGKG 239
           ++  IP+  +      L+K+   GF+T+ ++   K   ++  I     K+A+++G EG G
Sbjct: 170 SVFLIPWTWLDGSPYELRKL---GFRTVAMALTEKSISIDNPILATEPKLAIVMGTEGDG 226

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L+ +T   A  +  + M   + +LNV+ A+A+A +
Sbjct: 227 LQNETINEADYVVRIPMANGVDSLNVAAASAIAFW 261


>gi|153951021|ref|YP_001397411.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938467|gb|ABS43208.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 227

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            F +K +  +T  +   K   HQG  L+        L+ ++ +  +++L  ++D  NIGA
Sbjct: 41  GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A A     +I        E  +  +++SGA   +P +  ++    + ++   GF  
Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RASSGAALDLPIVISNDALSVINELKQVGFYF 157

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                  K+    +I N K  L+LG+EG GL  K  +       + M     +LNVS A 
Sbjct: 158 YASDGSGKEIHSVKINNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217

Query: 270 AV 271
           A+
Sbjct: 218 AI 219


>gi|328907932|gb|EGG27692.1| putative rRNA methylase [Propionibacterium sp. P08]
          Length = 271

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 7/151 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + +L ++   V DP N G ++R A AF  D +I T+      +    +S+ G++ H+P I
Sbjct: 117 DVRLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVI 176

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDK----IALILGAEGKGLRPKTQ 245
               L DA++  H        L++D     L+   ++ +    IA ++G E  GL    +
Sbjct: 177 VGVELADAVEWAHQREMSV--LAADGGGHSLDAVARSGRLKRPIAWLMGNEAWGLPEADR 234

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             A  +  + M G +++LN+S AAAV LY T
Sbjct: 235 ALADEVVGVPMWGAVESLNLSTAAAVVLYAT 265


>gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 264

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+G I+R+AVA    GI   K      +    +S   AL +IP     
Sbjct: 118 LYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFEDV 177

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L++    +     +T   S ++ KP        +  +ILG EG G+  +  E       
Sbjct: 178 TLSEFYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEMCDQAIT 237

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I++LNVS AAA+ +Y
Sbjct: 238 IPMYGDIESLNVSIAAALCMY 258


>gi|283955600|ref|ZP_06373093.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792825|gb|EFC31601.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 227

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            F +K +  +T  +   K   HQG  L+        L+ ++ +  +++L  ++D  NIGA
Sbjct: 41  GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A A     +I        E  +  +++SGA   +P +  ++    + ++   GF  
Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                  K+    +I N K  L+LG+EG GL  K  +       + M     +LNVS A 
Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217

Query: 270 AV 271
           A+
Sbjct: 218 AI 219


>gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
 gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
          Length = 251

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 114/249 (45%), Gaps = 14/249 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +KK+    +K R  +      L G H V  A+ + +  + +L+  +       WD +   
Sbjct: 15  WKKL--LTKKGREETG--CFLLEGFHLVEEAVKSQA-PLVELIVDERTTIPPGWDVS--- 66

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV  V  +T+ K +      QG+A     +       +   +  +++D V DP N+G 
Sbjct: 67  DVPVVIVT-ETVMKAISSTETPQGIA----AICRQRPHELTGVKTALLIDAVQDPGNLGT 121

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++R+A A   D +I  +  +   +  + ++  G+L H+P ++  ++ + + ++   G   
Sbjct: 122 MIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPVVK-GDVAEWITRLKEQGVPV 180

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G + ++        ++   AL++G EG G+R +  E  T   ++ + G  ++LNV+ AA
Sbjct: 181 YGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTTENVYIPIYGQAESLNVAVAA 240

Query: 270 AVALYITQN 278
            + LY  Q 
Sbjct: 241 GILLYSLQT 249


>gi|313898435|ref|ZP_07831972.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
 gi|312956817|gb|EFR38448.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
          Length = 243

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 5/157 (3%)

Query: 92  PVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148
           P++    Q ID++  GK   H GL          TL AV  ++S  L +++ V DP N G
Sbjct: 50  PIEQNSRQAIDELAQGK--THGGLLALCGERRFQTLQAVAEKDSVFLALIEGVEDPFNFG 107

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILR+  A  CDG+I   R   + + V+ K+++GA E++  I  +++   L +M     Q
Sbjct: 108 YILRTLYAAGCDGVIIPPRNWTTAAGVVTKASAGASEYLNLIVATDMEALLHEMKQADIQ 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            I         L       K+ L +G E +GL    Q
Sbjct: 168 LICAQRKDAISLYDYAFPLKLCLAIGGEMRGLSKHVQ 204


>gi|296826196|ref|XP_002850935.1| RNA methyltransferase [Arthroderma otae CBS 113480]
 gi|238838489|gb|EEQ28151.1| RNA methyltransferase [Arthroderma otae CBS 113480]
          Length = 510

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 100/242 (41%), Gaps = 73/242 (30%)

Query: 100 TIDKIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLL------------------ 135
           T+DK+ GK   H G+ LE +PL  P      T+ ++ NS  L                  
Sbjct: 241 TLDKMTGKRP-HNGMVLEASPLPKPPVLNFQTVVSMSNSHFLAQLAPQPDEQAAVNGTDG 299

Query: 136 -------------------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                              ++LD + DP N+GAI RSA  F  D I  +   S   S V+
Sbjct: 300 YIPFEARRKGAKASRYPFTLLLDGILDPGNLGAIFRSAHWFGADAIAFSPLNSAPISPVV 359

Query: 177 AKSASGALEHIPYIRISNLTDAL--QKMHSWGF-----QTIGLSSD---------SKKPL 220
            K+A+GA E +P + I ++T  +   + + W F         L++D         S   L
Sbjct: 360 MKAAAGATETVPTLAIRDVTTFITASQANGWKFFAADAPEATLTNDYTRKIPVVKSLSSL 419

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----------IKALNVSNAA 269
             E+      L+LG EG GL+ K +  A   A + +PG            + +LNVS A+
Sbjct: 420 STELTKAPCVLMLGGEGSGLQQKIKNRAD--AFVTIPGAYSDNICDDIAGVSSLNVSVAS 477

Query: 270 AV 271
           A+
Sbjct: 478 AL 479


>gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10]
 gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10]
          Length = 266

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 80/156 (51%), Gaps = 5/156 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R + +++VLD + DP N+G I+RSA A    G++  +  +   +    +S  G+L H+P
Sbjct: 110 LRENGMVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLP 169

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET 247
            +   +L   L +    G + +    + ++   E + K     +++G+EG+G+ P+    
Sbjct: 170 VLE-GDLLSILPEARERGARLVTTMLEGQRSCFEYDFKGTSW-IVIGSEGRGVSPEVAAL 227

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
                 + MPG  ++LN + AA+V +Y  + Q  +A
Sbjct: 228 VDDAIRIPMPGRAESLNAAMAASVLMYEALRQREYA 263


>gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 177

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   HN+G++LRS  AF  + +      +   SA + K+A GA + + +   +
Sbjct: 25  LVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGAEDSVTWKYFA 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250
             +DA+ ++H+ G +   +   +   + Q ++    ++ A++LG E KG++    +    
Sbjct: 85  ETSDAVDELHANGTKVFAVEQVANATMLQSLETKGGERYAVVLGNEVKGVQQTVVDRCDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS AA + ++     FAK
Sbjct: 145 CLEIPQFGTKHSLNVSVAAGIVVW----EFAK 172


>gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
 gi|169293904|gb|EDS76037.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
          Length = 238

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 6/145 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + DP NIG ++R+A+AFS D +I +       +  L +S  GA  HI  I   +L
Sbjct: 99  LILDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHINCIY-DDL 157

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              +  +     + IG + ++ + ++Q   ++K+A I+G EG G+     +    + ++ 
Sbjct: 158 KTVISTLKKNNVKIIGSALENGQDIKQIKISEKMAFIVGNEGNGMNKDILQECDYVGYIP 217

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           +   I++LNV+ A ++ +Y    HF
Sbjct: 218 I-NTIESLNVAIAGSIMMY----HF 237


>gi|239636367|ref|ZP_04677369.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
 gi|239597722|gb|EEQ80217.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
          Length = 246

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 9/153 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D     Q+L++ D + DP N+G ++R+A A   D I+  K  + P +  VL +++ G
Sbjct: 97  PDYDVTTAKQVLLI-DRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           ++ HIP I     +++LQ  ++++     G + D+    ++    +  ALILG EG+G+ 
Sbjct: 155 SVFHIPVI-----SESLQSYINTFNGPVYGTALDNAVSFKEIEAQETFALILGNEGEGVD 209

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P   E  T    + + G  ++LNV+ A ++ LY
Sbjct: 210 PALLEHTTQNITIPIYGQAESLNVAIAGSILLY 242


>gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
 gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
          Length = 281

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 18/198 (9%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPH 145
            P+ T+P + +  +VG  +VH+G     A +  P+   V      ++ L+ VL+ ++D  
Sbjct: 81  LPIYTLPKEEMSTLVGF-SVHRGY---FACMPRPSRRTVASLNLNSASLICVLETISDVS 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------DAL 199
           NIGA+ RSA AF  DGII     +   +    +++ GA+  +P+ + ++ T      D  
Sbjct: 137 NIGALFRSAAAFGVDGIILNASCADPYNRRSVRTSMGAVLSLPWAQAASATSHTWAADTA 196

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHM 256
             + S GF  I  + D        ++     K AL  G+EG GL  + +        + M
Sbjct: 197 CVLSSHGFVNIACALDDNAMSLNAVQMQSFSKKALWFGSEGWGLSQEARAACDMSVMIPM 256

Query: 257 PGIIKALNVSNAAAVALY 274
              I +LNV+ ++AV  +
Sbjct: 257 QRGIDSLNVAASSAVFFW 274


>gi|294631997|ref|ZP_06710557.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
 gi|292835330|gb|EFF93679.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
          Length = 290

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           AV +  L ++ D    P NIG+I+RSA AF  DG+I T   +        ++++G+   +
Sbjct: 112 AVHDGFLGLLFDRPTQPGNIGSIVRSADAFGADGLIVTGHAADPYDPKSVRASTGSFFAV 171

Query: 188 PYIRISN---LTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           P +R  +   + + L K  + G     +G   D +  + +      + L++G E  GL  
Sbjct: 172 PVVRSPSHHEVVEWLAKERAQGRPVAVVGTDEDGEADVSEFDLTQPVLLLIGNETAGLSA 231

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++    +  + M G   +LN SNAA+V LY
Sbjct: 232 AWRDLCDHVVSIPMTGSASSLNASNAASVVLY 263


>gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 271

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +N++  + LD V DP N+G I+R+A A   D +I +K  +   S    +S+ G++  IP 
Sbjct: 124 KNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPV 183

Query: 190 IRISNLTD-ALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +     TD ++ ++  W  +T    +G S    +P  Q   +     I G EG G+  K 
Sbjct: 184 V-----TDVSIDELIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGISQKI 238

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +    ++ +   +++LNVS A AV L+
Sbjct: 239 LNISDKKIYIPLKSNVESLNVSIATAVILF 268


>gi|302831964|ref|XP_002947547.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
           nagariensis]
 gi|300267411|gb|EFJ51595.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
           nagariensis]
          Length = 620

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 2/125 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + LD V DP N+GA++RSA      G++   R     SAV++K+++GALE +      
Sbjct: 347 VWLALDEVVDPQNLGAVVRSAYCLGAGGVLACARNCAPLSAVVSKASAGALEALQVHSCR 406

Query: 194 NLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSM 251
           NL   L       G+  +G ++ S       +  D+   L+LG+EG GLR   +   + +
Sbjct: 407 NLPRTLMDARDRKGWTVLGAAAGSGSEAVGRVVVDRPTILVLGSEGFGLRTNVRRACSGL 466

Query: 252 AHLHM 256
             + M
Sbjct: 467 VRVDM 471


>gi|157414470|ref|YP_001481726.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385434|gb|ABV51749.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747114|gb|ADN90384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931966|gb|EFV10919.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 227

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            F +K +  +T  +   K   HQG  L+        L+ ++ +  +++L  ++D  NIGA
Sbjct: 41  GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A A     +I        E  +  +++SGA   +P +  ++    + ++   GF  
Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                  K+    +I N K  L+LG+EG GL  K  +       + M     +LNVS A 
Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217

Query: 270 AV 271
           A+
Sbjct: 218 AI 219


>gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
 gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846701|gb|EDK23619.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
 gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 261

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VL+++ DP N+G I R+A A    GI+ +K      +  + +S  GA+  IP+I   +
Sbjct: 111 VLVLENIQDPGNLGTIFRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFRIPFIYTDD 170

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   + ++   G          +   + E      A ++G EG GL  +T   A     +
Sbjct: 171 LKGTIDELKREGITVYAAHLKGENSYDMEDYKTACAFLIGNEGNGLTEETAACADRKILI 230

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G  ++LN + A+AV ++
Sbjct: 231 PMEGGAESLNAAVASAVLMF 250


>gi|116073311|ref|ZP_01470573.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9916]
 gi|116068616|gb|EAU74368.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9916]
          Length = 229

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAK 178
           L   LD  R + L ++L+HV  PHN+ AILRS     CD +   + ++ S          
Sbjct: 11  LKAVLDG-RMANLTVLLEHVEKPHNLSAILRS-----CDAVGALEAHAVSLQGRPRTFNS 64

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAE 236
           +A G+ + +P     +  DA+Q++ + GF+  G  L  ++K   + +      A +LGAE
Sbjct: 65  TAQGSQKWVPLYDHPSTEDAVQQLKAKGFKLYGTHLGVNAKDYRDCDFTG-PTAFVLGAE 123

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL    ++       + M G++++LNVS AAA  L+
Sbjct: 124 KWGLSDTARDLMDEAVFIPMTGMVQSLNVSVAAATLLF 161


>gi|86149717|ref|ZP_01067947.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597269|ref|ZP_01100504.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561834|ref|YP_002343613.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839985|gb|EAQ57244.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190330|gb|EAQ94304.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359540|emb|CAL34324.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315928789|gb|EFV08060.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 227

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            F +K +  +T  +   K   HQG  L+        L+ ++ +  +++L  ++D  NIGA
Sbjct: 41  GFKIKKLDFKT-AQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A A     +I        E  +  +++SGA   +P +  ++    + ++   GF  
Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                  K+    +I N K  L+LG+EG GL  K  +       + M     +LNVS A 
Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAF 217

Query: 270 AV 271
           A+
Sbjct: 218 AI 219


>gi|303249293|ref|ZP_07335525.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           fructosovorans JJ]
 gi|302489299|gb|EFL49256.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           fructosovorans JJ]
          Length = 264

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 111 HQG----LALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG    LA      L   L A R + L   + LD V DP N+G + R+  A    GI+ 
Sbjct: 87  HQGVVARLAAGELTSLDDVLAATRAAPLPVAVALDRVQDPGNVGTLARTLFALGGGGILL 146

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +          AK+++G L  +P  +++NL  AL      GF  +G + + +     E 
Sbjct: 147 PRHEGARLGPGAAKASAGTLARLPVAKVTNLAQALDAAIEAGFSIVGAAGEPEADNALEA 206

Query: 225 KND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             D  + L+LG E +G+R   ++    +  +     I +LNV+ A A+ L
Sbjct: 207 TADFPLILVLGNEDEGIRQGIRKRCGRLWRIPQARPIDSLNVAQAGAIIL 256


>gi|311740492|ref|ZP_07714319.1| TrmH family rRNA methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304012|gb|EFQ80088.1| TrmH family rRNA methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 267

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++P N G ++R++ A   DG+I         S  +A++++G+L H+P  R  N+ D L +
Sbjct: 127 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQ 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G Q +  ++D +  L +   +   A + G E  GL    +E A     + + G  +
Sbjct: 187 LRKSGMQIVATAADGEVDLAEADLSQPTAWLFGNEAHGLGELLEE-ADMRVRIPLRGRAE 245

Query: 262 ALNVSNAAAVALY 274
           +LN++ AA++ LY
Sbjct: 246 SLNLATAASICLY 258


>gi|325297905|ref|YP_004257822.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324317458|gb|ADY35349.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 268

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 6/187 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + + ++ G       L     P +    +    ++ ++V+  V D  NIGAI
Sbjct: 81  IPVYTGGRELLARLTGYTLTRGVLCAMRRPPVKSVEEVCGGARRIVVIHGVTDTTNIGAI 140

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   DG++ T       +    + + G++  IP+        AL+++   GF+T 
Sbjct: 141 FRSAAALGIDGVLLTPDSCDPLNRRAVRVSMGSVFLIPWTWADAPLAALRRL---GFRTA 197

Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            L+ SD   PL+     +  ++AL++G EG GL   T   A     + M   + +LNV+ 
Sbjct: 198 ALALSDDSVPLDTPALKQEPRLALVMGTEGDGLPHATIAEADYTVRIPMAHGVDSLNVAA 257

Query: 268 AAAVALY 274
           A+AVA +
Sbjct: 258 ASAVAFW 264


>gi|327462015|gb|EGF08344.1| SpoU rRNA methylase [Streptococcus sanguinis SK1057]
          Length = 246

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
            D ++   S     +  +  S     +E+ + +  AL++G EG+G+ P+  E A  + H+
Sbjct: 164 ADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGISPEMTEAADILVHI 223

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G  ++LNV+ AA + ++
Sbjct: 224 SMKGQAESLNVAVAAGILIF 243


>gi|255324641|ref|ZP_05365758.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298547|gb|EET77847.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 267

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++P N G ++R++ A   DG+I         S  +A++++G+L H+P  R  N+ D L +
Sbjct: 127 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQ 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G Q +  ++D +  L +   +   A + G E  GL    +E A     + + G  +
Sbjct: 187 LRKSGMQIVATAADGEVDLAEADLSQPTAWLFGNEAHGLGELLEE-ADMRVRIPLRGRAE 245

Query: 262 ALNVSNAAAVALY 274
           +LN++ AA++ LY
Sbjct: 246 SLNLATAASICLY 258


>gi|57237161|ref|YP_178173.1| RNA methyltransferase [Campylobacter jejuni RM1221]
 gi|86151169|ref|ZP_01069384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315123758|ref|YP_004065762.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|57165965|gb|AAW34744.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
 gi|85841516|gb|EAQ58763.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|284925446|gb|ADC27798.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315017480|gb|ADT65573.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315057593|gb|ADT71922.1| rRNA methylase [Campylobacter jejuni subsp. jejuni S3]
          Length = 227

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            F +K +  +T  +   K   HQG  L+        L+ ++ +  +++L  ++D  NIGA
Sbjct: 41  GFKIKKLDFKTA-QAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL---QKMHSWG 206
           I R+A A     +I        E  +  +++SGA   +P I ISN  DAL    ++   G
Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLP-IAISN--DALSVINELKQVG 154

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F         K+    +I N K  L+LG+EG GL  K  +       + M     +LNVS
Sbjct: 155 FYFYASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVS 214

Query: 267 NAAAV 271
            A A+
Sbjct: 215 AAFAI 219


>gi|322390078|ref|ZP_08063613.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
 gi|321143205|gb|EFX38648.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
          Length = 181

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 112 QGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           QG+  E A L  P L D ++   L   L+ V DP N+G ++R+A A   DG++ +K  + 
Sbjct: 16  QGIVAEIA-LEQPVLPDQLQGRYL--YLEDVQDPGNVGTMIRTADAAGFDGVMLSKASAD 72

Query: 171 SESAVLAKSASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
             S    +S  G+  HIP  ++     L  A Q   +    T+  +S   + L Q    D
Sbjct: 73  LYSLKTLRSMQGSHFHIPIWKLDREELLERATQSHLAVLATTLSEASIDYRQLPQ---TD 129

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L++G EG G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 130 RFILVMGNEGNGISQEMATQADQLVHIPMPGRAESLNVAVAAGILMF 176


>gi|81428990|ref|YP_395990.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610632|emb|CAI55683.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 253

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++LD V DP NIG ++R+A A    G++    +   Y+P     L +S  G+  H+P I 
Sbjct: 110 LLLDAVQDPGNIGTMIRTADAAGFAGVVLGNGSVDLYNPK----LLRSMQGSHFHLP-IY 164

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATS 250
             NL D ++K +S      G   + +    Q++ K   +ALILG EG G+        T 
Sbjct: 165 QGNLIDWMKKFNSQDVPVYGTELNPEAISYQDVPKTADMALILGNEGNGVAKDVLAATTQ 224

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
             ++ +PG  ++LNV+ AA + ++
Sbjct: 225 NLYIPIPGNAESLNVAVAAGILMF 248


>gi|325919147|ref|ZP_08181205.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
 gi|325550388|gb|EGD21184.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
          Length = 153

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 67/138 (48%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 2   LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF      +D  + +       ++  ++GAE +G+  +          
Sbjct: 62  DTALAMAQLRQAGFAVAATLADGGEDVFAAALPQRLVYVMGAESEGMDRQFARDCDLQLS 121

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 122 IRGSGKVESLNVASATAV 139


>gi|307705545|ref|ZP_07642397.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307620822|gb|EFN99906.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 246

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 23/181 (12%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADFSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSS 214
              G+I + + +   S    +S  G+  H+P  R+S+   L +A  K  +       LS 
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQALLEEA--KEAAIPVLATTLSK 184

Query: 215 DSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           DS    E   I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + +
Sbjct: 185 DSVDYRELPPIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILI 242

Query: 274 Y 274
           +
Sbjct: 243 F 243


>gi|149053706|gb|EDM05523.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_b
           [Rattus norvegicus]
          Length = 221

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 21/166 (12%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---------ATKNALARLDWDANLPHPFPVKTVPPQTI 101
           L+GV     AL    R + +LL           +  L R+     +P   P +    Q +
Sbjct: 50  LFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRR----QKL 105

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSA 154
           D + G + VHQG+ +E + L     D   ++       QL +VL+ + DP N+GA++RSA
Sbjct: 106 DALCGYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRSA 164

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
                D +IT++R S   + V++K+++GA+E +      +L   LQ
Sbjct: 165 YFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQ 210


>gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
          Length = 190

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 12/153 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKR-YSPSESAVLAK-SASGA 183
           A R   L +V+++V+DPHNI A+LRS     CD  G++T    Y+  E   L++ S++ A
Sbjct: 6   ARRQPDLTVVIENVHDPHNISAVLRS-----CDAVGLLTVHLVYTIEEWPELSRVSSASA 60

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           ++ +  +R  ++    Q + + GF      LS+ S+   + ++    +AL+ G E +G+ 
Sbjct: 61  VKWLDIVRHESIEACYQALRAQGFTIYATHLSAASRDLYDLDLTG-PVALVFGNEHRGVS 119

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +    A     + M G++++LN+S A AV+LY
Sbjct: 120 DEAVANADGSVVIPMMGMVQSLNISVACAVSLY 152


>gi|21244041|ref|NP_643623.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109661|gb|AAM38159.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 154 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 213

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   AL ++   GF       D  + +       ++  ++GAE  G+             
Sbjct: 214 DTATALAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESDGMDRAFARDCDLQLS 273

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 274 IRGSGKVESLNVASATAV 291


>gi|225469664|ref|XP_002266337.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 459

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-----Y 189
           ++VLD + DP N+G +LRSA+AF   G+          +    +++ GA   +P     +
Sbjct: 303 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLPIVSGSW 362

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQ 245
           I +  L +  Q     G            PL Q + +      + L+LG+EG GL  K+ 
Sbjct: 363 IHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLCLVLGSEGSGLSEKSW 422

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    +  + M G  ++LNVS A  + LY+ Q
Sbjct: 423 QLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQ 453


>gi|330685097|gb|EGG96763.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU121]
          Length = 246

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 9/153 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D     Q+L++ D + DP N+G ++R+A A   D I+  K  + P +  VL +++ G
Sbjct: 97  PDYDITTAKQVLLI-DRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           ++ HIP I     +++LQ  ++++     G + D+    ++    +  ALILG EG+G+ 
Sbjct: 155 SVFHIPVI-----SESLQSYINTFNGPVYGTALDNAVSFKEVEAQETFALILGNEGEGVD 209

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P   E  T    + + G  ++LNV+ A ++ LY
Sbjct: 210 PALLEHTTQNITIPIYGQAESLNVAIAGSILLY 242


>gi|325928467|ref|ZP_08189658.1| rRNA methylase [Xanthomonas perforans 91-118]
 gi|325541184|gb|EGD12735.1| rRNA methylase [Xanthomonas perforans 91-118]
          Length = 356

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 205 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 264

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF       D  + +       ++  ++GAE +G+             
Sbjct: 265 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 324

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 325 IRGSGKVESLNVASATAV 342


>gi|306830168|ref|ZP_07463352.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
 gi|304427694|gb|EFM30790.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
          Length = 246

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 32/233 (13%)

Query: 53  GVHTVSAALNNPSR--KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGK 107
           G H    A+    R  KIF L + ++ LA      W +         T  PQ I  ++ K
Sbjct: 32  GWHLFEEAVQAGVRIEKIFALESYRDQLAAFPQTVWVSEDILQDLADTQTPQGIVAVIQK 91

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           E V  GL         P     +     + L+ V DP N+G ++R+A A    G+I + +
Sbjct: 92  EEV--GL---------PDFSQGK----FLFLEDVQDPGNVGTMIRTADATGFTGVIVSDK 136

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQ-KMHSWGFQTIGLSSDSK-----KPLE 221
            +   S    +S  G+  H+P  R+S  T   + K  +       LS +SK      PLE
Sbjct: 137 SADIHSLKTLRSMQGSHFHLPIYRMSLATFIEEAKKSNLPILATTLSKESKDYRELSPLE 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   AL++G EG+G+     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 197 ------NFALVMGNEGQGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|218899716|ref|YP_002448127.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
 gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
 gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
 gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
          Length = 265

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 115/257 (44%), Gaps = 20/257 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++  +P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMP--GIIKALN 264
              G + ++  P  +       ALI+G EG G+R   QE  T    +L++P  G  ++LN
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVR---QEILTKTDQNLYIPIYGGAESLN 246

Query: 265 VSNAAAVALYITQNHFA 281
           V+ AA +  Y  Q+  A
Sbjct: 247 VAVAAGILTYYLQSPVA 263


>gi|254458669|ref|ZP_05072093.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
 gi|207084435|gb|EDZ61723.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
          Length = 250

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 1/141 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ LD + +P N+G I+RS  A + DGII  K+ S   S ++ K++SG L  +P I   N
Sbjct: 110 LIALDGIQNPQNLGMIIRSCAAGNVDGIILPKKSSAKISPLVIKASSGTLFKLP-IYYCN 168

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             D +        +   LSS +K  +   +  +K   +LG E  G+ P+ ++       +
Sbjct: 169 TLDEIFPDLDADTRIYSLSSHAKTSIYDVVPTEKSIFVLGNESDGVSPEVEKLCNDSISI 228

Query: 255 HMPGIIKALNVSNAAAVALYI 275
            M   +++LNV+  A++  ++
Sbjct: 229 PMQRGVESLNVAVTASLLAFM 249


>gi|148926322|ref|ZP_01810006.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844714|gb|EDK21819.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 227

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            F +K +  +T  +   K   HQG  L+        L+ ++ +  +++L  ++D  NIGA
Sbjct: 41  GFKIKKLDFKT-AQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A A     +I        E  +  +++SGA   +P +  ++    + ++   GF  
Sbjct: 100 ITRTAYALGVGALIFIGEKLTMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                  K+    +I N K  L+LG+EG GL  K  +       + M     +LNVS A 
Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAF 217

Query: 270 AV 271
           A+
Sbjct: 218 AI 219


>gi|317493379|ref|ZP_07951801.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918772|gb|EFV40109.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 371

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 4/151 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++  ++ L+ V +PHN+G I+R+   F   G++  +  S  ES    ++A G  EHI  I
Sbjct: 221 DTDCVLALEDVGNPHNLGGIMRTCAHFGVKGLM-VQDASMLESGAAVRTAEGGAEHIQAI 279

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                  AL +    G+  +  SS     PL +     K+ L+LG E  GL     +   
Sbjct: 280 DADGFDGALDEFRRAGYTIVTTSSHKGTTPLTKATLPKKMVLVLGQERDGLSETVMQQGD 339

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
               +   G +++LNVS A  + L  +  QN
Sbjct: 340 LSLSIGGTGQVESLNVSVATGILLAEWWRQN 370


>gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 264

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+G I+R+AVA    GI   K      +    +S   AL +IP     
Sbjct: 118 LYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFEDV 177

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L++    +     +T   S ++ KP        +  +ILG EG G+  +  E       
Sbjct: 178 TLSEFYDFIKDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEMCDQAIT 237

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I++LNVS AAA+ +Y
Sbjct: 238 IPMYGDIESLNVSIAAALCMY 258


>gi|227875291|ref|ZP_03993433.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269978178|ref|ZP_06185128.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
           mulieris 28-1]
 gi|306818553|ref|ZP_07452276.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700888|ref|ZP_07637913.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|227844196|gb|EEJ54363.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269933687|gb|EEZ90271.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
           mulieris 28-1]
 gi|304648726|gb|EFM46028.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307613883|gb|EFN93127.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 269

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 88/182 (48%), Gaps = 7/182 (3%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + + ++V + A  QG     +  + P L  +R  ++ ++L    DP N+G +LR A A  
Sbjct: 85  ERVARVVAEAA--QGWFATASFAVFPPLHELRG-RVALILPETQDPGNVGTMLRLADACG 141

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +   ++ +   S  + +++ G++ H+P  R S+L   +  +H   +   G + D+  
Sbjct: 142 AGSVFMGEQSADVSSPKVIRASVGSVFHVPTPRFSDLAQLVSTLHESQWLVAGTALDAPL 201

Query: 219 PLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               E+     + K+A ++G E  GL    +E    +  + M G  ++ NVS AA +AL+
Sbjct: 202 AWGFEVASQFADKKVAWMMGNEAHGLNAAQRELCDVLMAIPMFGQAESFNVSQAATLALW 261

Query: 275 IT 276
           +T
Sbjct: 262 MT 263


>gi|161502249|ref|YP_001569361.1| putative methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863596|gb|ABX20219.1| hypothetical protein SARI_00277 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 345

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   ++ L+ + +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I
Sbjct: 195 DQDCVLALEDIANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPI 253

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              ++ D L      G+  +  SSD  + L      +K+ L+LG E   L    +E    
Sbjct: 254 TGESIVDVLDDFRQAGYTVVTTSSDRGQALFGATLPEKMVLVLGREYDFLPEAAREPDDL 313

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++  G +++LNVS A  V L  +  QN
Sbjct: 314 CVKINGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|33240822|ref|NP_875764.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238351|gb|AAQ00417.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 264

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S  ++ LD + DP N+G + R+A+A   D +       P    VL +S++GA+  +P+ R
Sbjct: 100 SNFVLALDRLQDPGNLGTLFRTALAADVDLVWLALGADPLGQKVL-RSSAGAVLKLPFQR 158

Query: 192 --------ISNLTDALQKMHSWGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEG 237
                   I+ L + L+K    GFQ +G  S +        P  +        L+LG EG
Sbjct: 159 LGGAEKHSINELVEKLEKARKQGFQIVGTYSPNSCHVLAVSPYWELDWTKPTVLVLGNEG 218

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G+ P  Q+  T    L     +++LNV++AA
Sbjct: 219 DGVHPTIQDCCTHSVSLPHNQQVESLNVASAA 250


>gi|312868274|ref|ZP_07728474.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
           F0405]
 gi|311096019|gb|EFQ54263.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
           F0405]
          Length = 181

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+  E A L  P L      + L  L+ V DP N+G ++R+A A   DG++ +K  +  
Sbjct: 16  QGIVAEIA-LEQPELPDQLQGRFL-YLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADL 73

Query: 172 ESAVLAKSASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
            S    +S  G+  HIP  ++     L  A Q   +    T+  +S   + L Q    D+
Sbjct: 74  YSLKTLRSMQGSHFHIPIWKLDREELLERATQSHLAVLATTLSEASIDYRQLPQ---TDR 130

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L++G EG G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 131 FILVMGNEGNGISQEMAAQADQLVHIPMPGRAESLNVAVAAGILMF 176


>gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera]
          Length = 1306

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 135  LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-----Y 189
            ++VLD + DP N+G +LRSA+AF   G+          +    +++ GA   +P     +
Sbjct: 1141 ILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRASRGASFQLPIVSGSW 1200

Query: 190  IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQ 245
            I +  L +  Q     G            PL Q + +      + L+LG+EG GL  K+ 
Sbjct: 1201 IHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLCLVLGSEGSGLSEKSW 1260

Query: 246  ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +    +  + M G  ++LNVS A  + LY+ Q
Sbjct: 1261 QLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQ 1291


>gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
 gi|257196892|gb|EEU95176.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
          Length = 259

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 12/213 (5%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAV 129
           L  T+ AL +    A LP    +  V     DK+      HQG+  +   P+   TLD  
Sbjct: 51  LFCTEAALEKCPELAGLPGEHYL--VEDHVADKLA-DVGTHQGVFGIFRTPV--HTLDEA 105

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     + L+ V DP N+G +LRSA AF  DG++ +   +   +    +++ GA   +P 
Sbjct: 106 KTGGRYLALERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRVPV 165

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET 247
           + +  +  A+  + +     +  +    +PL          + +++G+EG+GL  +T   
Sbjct: 166 MEVGAMPAAIAALRAKNITCLAAALYQSQPLSAARPGYPGGVCVVIGSEGQGLTEETIAA 225

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +    + M   +++LN   A ++ L+    HF
Sbjct: 226 CSGTVRIPMTDRVESLNAGIAGSILLW----HF 254


>gi|268316035|ref|YP_003289754.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262333569|gb|ACY47366.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 257

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 16/149 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ LD + DP N G ILR+A  F  + ++    T   Y+P     + ++A G+   +  +
Sbjct: 109 ILALDGLQDPGNAGTILRAAAWFGIEAVVAGAGTVDLYNPK----VVRAAMGSHWDLALV 164

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R   L D L ++ + GF   G   +   P  +    +   L+LG+E  GL+P  +E  T 
Sbjct: 165 RTGALPDLLAQLQANGFTCYGADLEG-TPASRWQPREPAVLVLGSEAHGLQPAVRERLT- 222

Query: 251 MAHLHMPG-----IIKALNVSNAAAVALY 274
            A + +PG       ++LNV+ AA V LY
Sbjct: 223 -ARVTVPGSPRRQATESLNVAMAATVLLY 250


>gi|332362244|gb|EGJ40044.1| SpoU rRNA methylase [Streptococcus sanguinis SK1056]
          Length = 246

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
            D ++   S     +  +  S     +E+ + +  AL++G EG+G+ P+  E A  + H+
Sbjct: 164 ADFIRLAQSSHLPILASTLSSTSIDYREVNSRESFALVMGNEGQGISPEMTEAADILVHI 223

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G  ++LNV+ AA + ++
Sbjct: 224 SMNGQAESLNVAVAAGILIF 243


>gi|307710737|ref|ZP_07647165.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
 gi|307617343|gb|EFN96515.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
          Length = 246

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 86/181 (47%), Gaps = 23/181 (12%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADFSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I + + +   S    +S  G+  H+P  R+S  + AL K        +  ++ SK
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMS--SQALLKETKEAAIPVLATTLSK 184

Query: 218 KPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             ++      I+N    L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA + +
Sbjct: 185 DSVDYRELPPIEN--FVLVMGNEGQGISPLMVESADQLVHISMKGQAESLNVAVAAGILI 242

Query: 274 Y 274
           +
Sbjct: 243 F 243


>gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
 gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
 gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
 gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
          Length = 265

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++  +P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|315604404|ref|ZP_07879470.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314110|gb|EFU62161.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 293

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 17/171 (9%)

Query: 125 TLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +LDA+R         + L+V+    DP N+G I+R+A AF    +I       + S  + 
Sbjct: 107 SLDALRRELPDAEVGETLVVIAQGRDPGNVGTIIRTADAFGARAVIAVAGTVDAASPKVV 166

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-------- 229
           +S++G++ H+P   + +  +A   +H  G   +G S  S      ++  + I        
Sbjct: 167 RSSAGSVFHLPVCLVPSFAEARDLIHGRGAALLGTSGGSGSLDLADLLVEGISSRSRLSQ 226

Query: 230 --ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             A   G E +GL  +       +  + M G  ++LNV++AAA  L+ +Q 
Sbjct: 227 SHAWAFGNEARGLSAEEMRACDGLVAIPMTGRAESLNVASAAATCLFASQT 277


>gi|332359132|gb|EGJ36953.1| SpoU rRNA methylase [Streptococcus sanguinis SK49]
          Length = 246

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAACFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D ++   S     +   LSS S    E + K D   L++G EG+G+ P+    A  + H
Sbjct: 164 ADFIRLAQSSSLLILASTLSSTSIDYREVDSK-DSFVLVMGNEGQGISPEMTAAADVLVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243


>gi|205356595|ref|ZP_03223358.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345600|gb|EDZ32240.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 227

 Score = 62.4 bits (150), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            F +K +  +T  +   K   HQG  L+        L+ ++ +  +++L  ++D  NIGA
Sbjct: 41  GFKIKKLDFKT-AQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGA 99

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A A     +I        E  +  +++SGA   +P +  ++    + ++   GF  
Sbjct: 100 ITRTAYALGVGALIFIGEKLAMEGVI--RTSSGAALDLPIVISNDALSVINELKQVGFYF 157

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                  K+    +I N K  L+LG+EG GL  K  +       + M     +LNVS A 
Sbjct: 158 YASDGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIVMKNNFDSLNVSAAF 217

Query: 270 AV 271
           A+
Sbjct: 218 AI 219


>gi|83764572|dbj|BAE54716.1| unnamed protein product [Aspergillus oryzae]
          Length = 495

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 126/314 (40%), Gaps = 92/314 (29%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLL----------ATKNALARL------------ 81
           + P + F+YG   V AAL    R +++L           + K AL +L            
Sbjct: 171 TTPASEFIYGTSAVEAALRCSRRHMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAF 230

Query: 82  -DWD-------ANLPH--------PFP------VKTVPPQTIDKIVGKEAVHQGLALETA 119
             WD       A  PH        P P      +K+VP    +       V  G      
Sbjct: 231 GGWDRLLDKMSAGRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDF----GVELGAQSREE 286

Query: 120 PLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            L++ T D ++           ++++LD + DP N+GAI+RSA     D II   R S  
Sbjct: 287 ALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAP 346

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            S V  K+++GA E++  + +SN  D +Q  K + W F     ++D+  P  + +    I
Sbjct: 347 LSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKF----YAADAPGPASKYVDTASI 402

Query: 230 ------------------ALILGAEGKGLRPKTQETATSM-----AHLHMP-GI------ 259
                              +++G+EG GL    +  A S+     A L  P G+      
Sbjct: 403 VEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSR 462

Query: 260 IKALNVSNAAAVAL 273
           + +LNVS AAA+ +
Sbjct: 463 VDSLNVSVAAALLM 476


>gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 265

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 18/256 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGV---FAVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++  +P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK-GNLEEWVDKLKENNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNV 265
              G + ++  P  +       ALI+G EG G+R +    A +  +L++P  G  ++LNV
Sbjct: 190 PVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEI--LAKTDQNLYIPIYGGAESLNV 247

Query: 266 SNAAAVALYITQNHFA 281
           + AA +  Y  Q+  A
Sbjct: 248 AVAAGILTYYLQSPVA 263


>gi|283769025|ref|ZP_06341931.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
 gi|283104382|gb|EFC05759.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
          Length = 237

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 5/185 (2%)

Query: 92  PVKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           PV  +  + I+ +  GK   H GL  +    +   L+  R+S  L+VL+ V DP N G +
Sbjct: 47  PVYRLKREEINTLAFGK--THGGLLADVEERIMDHLEISRSS-FLLVLEGVVDPFNFGYM 103

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A +   DGI+  + +     +V+ KS++GA +H   I   +L   L+ +   GF   
Sbjct: 104 VRTAYSAGVDGILIPEYHWHDLESVILKSSAGAFDHCSIIPSKDLAQDLRLLKEKGFTIY 163

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSNAA 269
               D+    ++    +     +G E +GL  +  E      ++ +  G   ALN ++A 
Sbjct: 164 AGYRDNAIVYDEADYTNPTVFCVGGELRGLSKQVLEQVDQAVYIPYANGFKNALNAASAC 223

Query: 270 AVALY 274
           +V  +
Sbjct: 224 SVFCF 228


>gi|209966487|ref|YP_002299402.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
 gi|209959953|gb|ACJ00590.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
          Length = 265

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 7/141 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSASGALEHIPYIR 191
           L++LD + +PHN+GAI+R+A  F  D ++ +   ++  PSESA   + A G  E++   R
Sbjct: 120 LLLLDGIGNPHNLGAIVRTAAFFGLDRLVISDHPEQAQPSESAY--RVAEGGFEYVQIYR 177

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATS 250
                 A++++    ++ +G +      L +     K  A++LG E  GL  +T      
Sbjct: 178 ADRFATAVRRLAE-SYRVVGTALGGHPALGRLTGGPKPPAVLLGNEEDGLPAETLRACAE 236

Query: 251 MAHLHMPGIIKALNVSNAAAV 271
           +A +   G +++LNV+  AA+
Sbjct: 237 LATIPGAGQVQSLNVAATAAI 257


>gi|53805210|ref|YP_113068.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53758971|gb|AAU93262.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str.
           Bath]
          Length = 282

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 15/194 (7%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRN----SQLLMVLDHVNDPH 145
           P + +PP+ + ++ G   +H G+     P   P  TL+  +         ++LD V +PH
Sbjct: 84  PYRLLPPEEMARVAGT-VLHGGIVAAVRPREVPDLTLETAQRWAKAGAATVLLDGVGNPH 142

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAV---LAKSASGALEHIPYIRISNLTDALQKM 202
           N+GAI R+   F    ++ +    P+++ +     + A G LE +   R++    AL+ +
Sbjct: 143 NLGAIARTLAFFGLGHLVLSD--HPAQAGLSDAAYRVAEGGLEFLDVRRLTGAAQALRSL 200

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               F  +G +  ++    + +  D+  I L+LG E  GL P T     ++  +   G I
Sbjct: 201 RPH-FHVVGTALHARGIPPEAVPRDRRPILLVLGNEENGLPPPTLAACETVVTIPGGGQI 259

Query: 261 KALNVSNAAAVALY 274
           ++LNVS  AA+  Y
Sbjct: 260 QSLNVSATAAILTY 273


>gi|258591300|emb|CBE67599.1| putative enzyme [NC10 bacterium 'Dutch sediment']
          Length = 261

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 71/136 (52%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+GAI+R+A A   +G+   K  +   +  +AK+++GA EH+   R++ L   
Sbjct: 103 DGVQDPQNLGAIIRTAEAAGANGLFIAKHRAAGITPAVAKASAGASEHLAVARVAGLPAF 162

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   G  T+G    + + L +      + +++G E +GL    ++    +A +   G
Sbjct: 163 LAWLKDQGIWTLGADPSAVQSLYEIDLRAPMGVVIGGEHRGLTMLVRQRCDLLARIPTRG 222

Query: 259 IIKALNVSNAAAVALY 274
            + +LN + AAAV L+
Sbjct: 223 RVDSLNAAAAAAVFLF 238


>gi|256545522|ref|ZP_05472882.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
 gi|256398733|gb|EEU12350.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
          Length = 243

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190
           S  +++LDH+ DP N+G I+RSA AFS   II         +    +++ G++  + +I 
Sbjct: 98  SDKILLLDHIQDPGNLGTIIRSAEAFSFKDIILLNSCVDIYNEKTIRASMGSIFRLNFIE 157

Query: 191 -RISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             I++L D L K +      + G S D  K        DKI L +G E  G+    +  +
Sbjct: 158 VEINDLKDLLDKNYKLVLADMNGKSVDYYKSC------DKIILAIGNEANGISKSLKGLS 211

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G I++LN    AA+A  I  N+F++
Sbjct: 212 NDFVSIKMDGRIESLN----AAIAASILMNNFSQ 241


>gi|119476215|ref|ZP_01616566.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2143]
 gi|119450079|gb|EAW31314.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2143]
          Length = 255

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 70/140 (50%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ LD++ +P N+G I+RS  A + DG+I  ++   + S ++ K++ G +   P +    
Sbjct: 114 LIALDNITNPQNVGMIIRSVCAGNIDGLIIPRKGCAALSPLVIKASVGTVFKAPLLHCET 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L  +         LSS +K+ L +      +  ILG E +G+  + Q+ +     +
Sbjct: 174 LAQGLGALRDRDVTICTLSSHAKQSLFEYQAQQSVVYILGNETEGVSEEVQKLSDQQLSI 233

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M   +++LNV+  AA+  +
Sbjct: 234 PMNNGVESLNVAVTAALIAF 253


>gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
 gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
          Length = 264

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 17/213 (7%)

Query: 75  KNALARLDWDANLPHPFPVKTVPP-QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
           KN L  LD D     P  +   P    +D  V  + V        A +  PT D    S 
Sbjct: 60  KNILDLLDLDTVQSVPKYIAQDPVFDKVDNTVNGQGV-------VAIVSKPTYDIESISI 112

Query: 133 --QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
              L + LD V DP N+G I+R+AVA    GI   K      +    +S   AL  IP  
Sbjct: 113 VDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLY 172

Query: 190 --IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             I ++ L D + + +   + T   + +   P        +  L+LG EG G+ P+    
Sbjct: 173 EDITLTLLHDMVTESNMTSYVT---ALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNL 229

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            T+   + M G +++LNVS AAA+ +Y  Q   
Sbjct: 230 CTNRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262


>gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 266

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 74/147 (50%), Gaps = 10/147 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP 188
           QLL+++D + DP N+G I+R++ A   D +I    T   Y+P       ++  G+L H+P
Sbjct: 117 QLLVLVDGIQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKT----LRATMGSLFHLP 172

Query: 189 YIRISNLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            I       A + +   G +  +G+  D  +P+        +AL++G+E  G+    +  
Sbjct: 173 VIMAGEPVQAAELLLQAGIRLVVGMPQDC-QPVYSVDLTGPVALVVGSEANGVSEGLKRL 231

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                ++ MPG  ++LN + AAA+ LY
Sbjct: 232 PAIPVNIPMPGHAESLNAAIAAAIMLY 258


>gi|78048990|ref|YP_365165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037420|emb|CAJ25165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 390

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 239 LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 298

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF       D  + +       ++  ++GAE +G+             
Sbjct: 299 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 358

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 359 IRGSGKVESLNVASATAV 376


>gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
           5501]
 gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
           5501]
          Length = 268

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 6/149 (4%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + ++ L +++D + DP N+G ILR+A     DG+   K      +    ++  G+L  +P
Sbjct: 113 IEDNDLFLIIDRIQDPGNLGTILRTADGAGVDGVFLLKGTVDIYNLKTIRATMGSLFRVP 172

Query: 189 YIRI---SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              +   S+LTD LQ       Q +    ++K    +   N   AL++G EG G +P+T 
Sbjct: 173 VFGLNSPSDLTDILQMKD---IQMVAADIEAKDYYYELDYNQPTALVIGNEGAGAQPETL 229

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + A     + +   I +LN + A+ + +Y
Sbjct: 230 KLADKKVKIPLSEGIDSLNAAIASGIIMY 258


>gi|154174304|ref|YP_001407505.1| RNA methyltransferase [Campylobacter curvus 525.92]
 gi|112803838|gb|EAU01182.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter curvus
           525.92]
          Length = 226

 Score = 62.4 bits (150), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 5/162 (3%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG   +        ++ ++    + VL  ++D  NIGAI RSA A  C+G+I   +   
Sbjct: 61  HQGFLAKVGEYEFAAMNELKKMSFIAVLYGISDVGNIGAITRSAYALGCEGLIVVAKSIN 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KI 229
            E  +  +++SGA   IP     +    L ++   GF     +S+ K     E+K D K 
Sbjct: 121 MEGVL--RASSGAAYEIPIALFEDGLSLLNELKQSGFCLYATASNGKNV--HEMKFDPKR 176

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ALI+G+E +G+  K          + +     +LNVS A A+
Sbjct: 177 ALIMGSESEGIPQKALAKCDECVGIKLKEGWDSLNVSAAFAI 218


>gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414431|gb|EFY05245.1| putative RNA methyltransferase, TrmH family, group 3
           [Phascolarctobacterium sp. YIT 12067]
          Length = 261

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 26/249 (10%)

Query: 39  KSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +   Q + LFL  G+ TV  A+   + +     A ++   R   +        +  V 
Sbjct: 18  KQKKYRQQQGLFLAEGLRTVEEAVRYGAVQSIFYTAIEDDRTRAVLEEAAAKQIKLVCVS 77

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            + + KI   E   QG+ +    + S  LD  + + ++L+VLD V DP NIG +LR+A A
Sbjct: 78  DKVLKKIADTE-TPQGI-IAVCEMRSKRLDEFLASGKMLLVLDRVTDPGNIGTMLRTADA 135

Query: 157 ---------FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL--QKMHSW 205
                      C  I     Y+P       +++ G+L H+P   +S L++ L  Q     
Sbjct: 136 AGVGGLLLLQGCADI-----YAPKT----VRASMGSLFHLPV--LSGLSEELLVQAARKA 184

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G++ +    D    L +     ++A ++G E  G+ P     A     + M G  ++LNV
Sbjct: 185 GYELLVTCLDGADNLYKADLQGRLAFVMGNEANGVSPALLAAADKRVFIPMQGRAESLNV 244

Query: 266 SNAAAVALY 274
           + AA + ++
Sbjct: 245 AMAAGIVMF 253


>gi|310764912|gb|ADP09862.1| putative methyltransferase [Erwinia sp. Ejp617]
          Length = 344

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ + +PHN+G I+RS   F   G++     S  ES    ++A G  EH+  I   
Sbjct: 198 CVVALEDIGNPHNLGGIMRSCAHFGAKGLLVDD-ASLLESGAAVRTAEGGAEHVQAISGE 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L      G+  +  SS    PL       K+ L+LG E  GL   T +       
Sbjct: 257 SFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAKMVLVLGQERDGLSDSTFQQGDLSVS 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 317 ISGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|315223129|ref|ZP_07864997.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
           anginosus F0211]
 gi|315187818|gb|EFU21565.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
           anginosus F0211]
          Length = 246

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  ++  +   +    +S  G+  H+P  R+   
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRSMQGSHFHLPVYRVKT- 163

Query: 196 TDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D L+  K          LS DS    E    +D  AL+LG EG+G+  +  E A ++ H
Sbjct: 164 ADFLELAKQVQLPILATTLSKDSMDYRELAPLSD-FALVLGNEGQGISHEMAEAADNLIH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 ISMKGRAESLNVAVAAGILIF 243


>gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
 gi|259165275|gb|EEW49829.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
          Length = 278

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 8/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNIGA 149
            PV  V  + + ++ G + +H+GL      +  PT+ +V + ++ ++VL+ V D  NIG+
Sbjct: 79  IPVYEVTREVLAEVAGFD-MHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENIGS 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK----MHSW 205
           + R+A     D I+     +      + + + G +  +PY  ++      Q+    +   
Sbjct: 138 MFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELADA 197

Query: 206 GFQTIGLSSDSKKP-LEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           GF  + L+ D +   LE  +   +K+AL++GAEG GL           A + M     +L
Sbjct: 198 GFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDSL 257

Query: 264 NVSNAAAVALY 274
           N++ +AA+A Y
Sbjct: 258 NLATSAAIAFY 268


>gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255267915|gb|EET61120.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 260

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           LL++L+ + DP N+G I R+A A    GII    T   Y+P       +S  G++  +P+
Sbjct: 110 LLLLLEDIQDPGNLGTIFRAAEAAGATGIIMSSGTADIYNPK----TIRSTMGSIYRMPF 165

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +   ++    +K+ + G +T            ++      A ++G EG+GL     E A 
Sbjct: 166 LYTKDIAAMQEKLKARGIRTYAAHLKGSCTYTEQAYRKGCAFLIGNEGRGLSDALAEKAD 225

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +   + M G +++LN + +AA+ ++
Sbjct: 226 ARIKIPMSGEVESLNAAVSAAILMF 250


>gi|329116746|ref|ZP_08245463.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
           2020]
 gi|326907151|gb|EGE54065.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
           2020]
          Length = 247

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 123 SPT-LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           SPT L+ ++   LL  L+ V DP N+G ++R+A A    G+  + + +   +    +S  
Sbjct: 94  SPTVLEDMQGKYLL--LEDVQDPGNLGTLIRTADAAGFTGVFLSDKSADLYNPKTLRSMQ 151

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGL 240
           G+  H+P  R  N+    Q+    G   I  +   +    Q I+  +   L++G EG G+
Sbjct: 152 GSHFHLPVWR-DNVLQFCQQAKEVGVPVIASTLSDQSVDYQSIETPESFILVMGNEGAGI 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  E A ++ H+ MPG  ++LNV+ AA + ++
Sbjct: 211 SSQMTEIADTLVHITMPGQAESLNVAVAAGILIF 244


>gi|224372518|ref|YP_002606890.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
 gi|223588486|gb|ACM92222.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
          Length = 221

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 14/226 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGK 107
           + +YG   V   +      + +LL  K    +LD  + N    F +  +  +T  KI  +
Sbjct: 1   MIVYGKRVVEYIIQKHGNIVKELLIAK----KLDKKELNKLKQFKINFIDNKTAQKI-SR 55

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
              HQG   +     +P    +  +++ ++LD V D  NIGAI R+A A   D +I T  
Sbjct: 56  NGNHQGYFAKID--FTPGEWEITGNKI-VILDGVTDMGNIGAITRTAYALGVDLLIITGI 112

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                  V+  SA  AL+ +  +   N+ D +  + + G+   G         E +I+ D
Sbjct: 113 KELKWPQVIRTSAGAALD-MKILTYHNILDLINILKTKGYIIAGADMGG----ECKIEAD 167

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K+ALILG EG+GL+ K +E    +  + M     +LNVS AA + +
Sbjct: 168 KLALILGNEGEGLKKKVKEKLDKILSIEMKNGFDSLNVSVAAGILI 213


>gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
 gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
 gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
 gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
 gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
 gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
          Length = 264

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 6/153 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
           +  L + LD V DP N+G I+R+AVA    GI   K      +    +S   AL  IP  
Sbjct: 113 DDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLY 172

Query: 190 --IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             I +S L D + + +   + T   + +   P        +  L+LG EG G+ P+    
Sbjct: 173 EDITLSLLHDMVTESNMTTYVT---ALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNL 229

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            T+   + M G +++LNVS AAA+ +Y  Q   
Sbjct: 230 CTNRIMIPMYGDMESLNVSVAAALCMYKVQEQL 262


>gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|315261043|gb|ADT97784.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 271

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 16/255 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ-LLATKNALARLDWDAN- 86
           D++ + S +++    S    +   GV  V   L   SR + + LL T   L  L  D + 
Sbjct: 17  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRML--ASRFVPRALLGTDRRLTELGTDLDG 74

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLS--PTLDAVRNSQLLMVLDHVND 143
           L  PF   T   + + + +G       LA  + AP L+    LD  R    + VL+ VND
Sbjct: 75  LAAPFYRATA--EVMAEAIGFHLNRGVLASASRAPELTVAEVLDGART---VAVLEGVND 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G++ R+A     D +I     +        + + G    +P+ R +N    L  + 
Sbjct: 130 HENLGSVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWPADLNILR 189

Query: 204 SWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
              F+ + ++ D   P   +    +  ++IA+++GAEG GL+  T  +A     + M   
Sbjct: 190 DNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMARG 249

Query: 260 IKALNVSNAAAVALY 274
             +LNV+ AAA+A Y
Sbjct: 250 TDSLNVATAAALAFY 264


>gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|23492738|dbj|BAC17710.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
          Length = 301

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 8/191 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNIGA 149
            PV  V  + + ++ G + +H+GL      +  PT+ +V + ++ ++VL+ V D  NIG+
Sbjct: 102 IPVYEVTREVLAEVAGFD-MHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENIGS 160

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK----MHSW 205
           + R+A     D I+     +      + + + G +  +PY  ++      Q+    +   
Sbjct: 161 MFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELADA 220

Query: 206 GFQTIGLSSDSKKP-LEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           GF  + L+ D +   LE  +   +K+AL++GAEG GL           A + M     +L
Sbjct: 221 GFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTDSL 280

Query: 264 NVSNAAAVALY 274
           N++ +AA+A Y
Sbjct: 281 NLATSAAIAFY 291


>gi|307707580|ref|ZP_07644061.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
 gi|307616293|gb|EFN95485.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
          Length = 246

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 21/180 (11%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  +V KE V Q               A  +    + L+ V DP N+G I+R+A A 
Sbjct: 82  PQGIVAVVQKEEVGQ---------------ADFSQGKFLFLEDVQDPGNVGTIIRTADAA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSD 215
              G+I + + +   S    +S  G+  H+P  R+S+    L++    G   +   LS D
Sbjct: 127 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMSSQA-LLKETKEAGISVLATTLSKD 185

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    E   I+N    L++G EG+G+     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 186 SVDYRELPPIEN--FVLVMGNEGQGISSLMAESADQLVHISMKGKAESLNVAVAAGILIF 243


>gi|326773519|ref|ZP_08232802.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
 gi|326636749|gb|EGE37652.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
          Length = 286

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPT---LDAVRN---SQLLMVLDHVNDP 144
           PV   P + ++ I G   +H+G LA    P L+     L + R    ++ + +L+ + D 
Sbjct: 86  PVFVAPEEVLESITGFH-LHRGALAAMNRPELAGVPELLSSARGGAGAKRVAILEDLVDH 144

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA  RSA A   D ++ T R +        + + G +  +P+ RI     A+ ++H+
Sbjct: 145 TNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWP-AMDELHA 203

Query: 205 WGFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            GF    L+ SD+   L++          + ++A++LG EG GL  +T   A  +  + M
Sbjct: 204 QGFTVAALALSDTSVALDEFAASPACTAPDSRVAVVLGTEGDGLSHRTITAADEVVRIPM 263

Query: 257 PGIIKALN 264
            G + +LN
Sbjct: 264 AGGVDSLN 271


>gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 263

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           L++VLD ++DP N+G ++R+A A +  G+I    +   Y+P     + ++A G L HIP 
Sbjct: 112 LILVLDEIHDPGNVGTMIRTARAMNAQGVILLSGSADLYNPK----VVRAAMGNLFHIPV 167

Query: 190 IRISNLT-DALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              + +T DAL       G+  +  + D    L       K  LI+G+E +G+     E 
Sbjct: 168 --FTGITEDALMTFAQKAGWTLVATALDGAADLRDFTYPQKTLLIMGSEAEGVSHSLLEK 225

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +   + M G  ++LNV  AA + LY
Sbjct: 226 SAARVKIPMLGEAESLNVGVAAGILLY 252


>gi|325690945|gb|EGD32945.1| SpoU rRNA methylase [Streptococcus sanguinis SK115]
          Length = 246

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
            D +    S G   +  +  S     +E+ + +  AL++G EG+G+ P+    A  + H+
Sbjct: 164 ADFIILAQSSGLPILASTLSSASIDYREVGSKESFALVMGNEGQGISPEMTAAADILVHI 223

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G  ++LNV+ AA + ++
Sbjct: 224 SMKGQAESLNVAVAAGILIF 243


>gi|237732567|ref|ZP_04563048.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908106|gb|EEH94024.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 363

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 5/148 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ + +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 216 CVLALEDIANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 274

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252
           ++ D L      G+  +  SS   KPL      +K+ L+LG E + L P+   +A  +  
Sbjct: 275 SIVDVLDDFRQAGYTVVMTSSAKGKPLFTTTLPEKMVLVLGREREAL-PEAACSADDLCI 333

Query: 253 HLHMPGIIKALNVSNAAAVAL--YITQN 278
            +   G ++ LNVS A  V L  +  QN
Sbjct: 334 AIDGTGKVETLNVSVATGVLLAEWWRQN 361


>gi|167647515|ref|YP_001685178.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349945|gb|ABZ72680.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 268

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           K R     + LF+    TV  A   + P R +  L+  K A    +    LP   PV  V
Sbjct: 22  KERDLVGRQGLFIAEGETVLRAFVRDAPERVLSLLIDGKRADKLGEVFDGLPDGVPVYVV 81

Query: 97  PPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILR 152
               +D I G   +H+G+    A   PL +  L A    + +++VL  + +  N+G I R
Sbjct: 82  GQAVLDAIAGFH-LHRGVLAVGAKPQPLSADALLARAGERAIVLVLMGIANHDNLGGIFR 140

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  DG+I              + + GA   +P   ++   D +  +    FQ + L
Sbjct: 141 NAAAFGVDGVILDADCCDPFYRKAIRVSIGATLGVPTAWLAPGEDVVALLERHDFQALAL 200

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S  +   L +     + A++LGAEG GL P     A ++  + M G   +LNV+  + + 
Sbjct: 201 SPAADLTLARLDPPARAAVLLGAEGPGLSPAVMARARTVG-IPMAGGFDSLNVATTSGIV 259

Query: 273 LY 274
           L+
Sbjct: 260 LH 261


>gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON]
 gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON]
          Length = 261

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           LL+VLD V DP N+G ++R+A A     +I    T  +Y+P     + ++A G+  H+P 
Sbjct: 112 LLLVLDAVQDPGNVGTMIRTADAMGFSAVIAGRGTADQYNPK----VLRAAMGSSFHMPV 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                L +AL ++       +         +++    D+ A+I+G E +G+  K  + A 
Sbjct: 168 YNDVPLPEALTELMER-VSVLAAVPRGGIDIDEAPLADRTAIIIGNEARGISDKVMDNAA 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + MPG  ++LN S AA + +Y
Sbjct: 227 YTVSIGMPGRAESLNASIAAGIIMY 251


>gi|295395440|ref|ZP_06805639.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971762|gb|EFG47638.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 330

 Score = 62.0 bits (149), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           ++S+L++VL  V DP N G +LR A A   D +I T       +    ++ +G+L H+P 
Sbjct: 171 KDSKLVVVLSQVRDPGNAGTVLRVADAAGADSVIFTNSSVDVYNPKTVRATAGSLFHLPV 230

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-----DSKKPLEQEIK-NDKIALILGAEGKGLRPK 243
           +    L + ++   + G Q +   +     D   P +  +  +   A + G E  GL  K
Sbjct: 231 VTGVGLPEVVELARARGLQVLAADAHPPAHDLHVPWDTGLDLSQPTAWVFGNEAWGLPEK 290

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279
            ++ A S   + + G  ++LN++ AAAV LY + +NH
Sbjct: 291 DRKQADSAVAIPLYGQAESLNLATAAAVCLYESARNH 327


>gi|113460445|ref|YP_718507.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|112822488|gb|ABI24577.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
          Length = 364

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 8/151 (5%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD       L+VL+ V + HNIG I+R+ V +    ++         SAV  + A G +E
Sbjct: 210 LDIPHQKNCLLVLNGVRNAHNIGGIIRTCVCYGISAVVIDD-VELLHSAVAMRVAEGGME 268

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILG-AEGKGLRPK 243
           +I  + I     AL K+   G+Q + LSS+   K ++Q   NDK+A +L  A+ + L  K
Sbjct: 269 YIHPLEIDRTETALVKLRQAGYQIVHLSSNKHAKTIKQLQLNDKVAFVLSEADTESLADK 328

Query: 244 TQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273
             E    + +L +   +K  LNVS A  + L
Sbjct: 329 ADE----LINLSLVNPLKHGLNVSVATGILL 355


>gi|325916659|ref|ZP_08178919.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537102|gb|EGD08838.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 235

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 84  LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 143

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               A+ ++   GF       +  + +       ++  ++GAE +G+  +          
Sbjct: 144 EAPLAMTQLRQTGFAVAATLVEGGQDVFAAALPQRLVYVMGAESEGMDRQFARDCDLQLS 203

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G++++LNV++A AV
Sbjct: 204 IRGSGLVESLNVASATAV 221


>gi|94969640|ref|YP_591688.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551690|gb|ABF41614.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
          Length = 285

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 5/143 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ +  V DP N+G ILRSA AF   G+ I  K  SP    V+ + +SG++  +P +++
Sbjct: 137 MLLGVAGVQDPGNLGTILRSAEAFGATGVLIGDKTASPWNPKVI-RGSSGSVFRLPVVKV 195

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSM 251
                AL+++ + G Q +  SS   +PL +        +++G EG G+ R        ++
Sbjct: 196 -EWPAALEQLRAKGVQILATSSHKGEPLPEVDFTGPTIVLIGGEGAGVPRDVLASVDGTL 254

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           A  H P  +++LN   AA++ +Y
Sbjct: 255 AIPHSPK-VESLNAGIAASIVMY 276


>gi|325696356|gb|EGD38247.1| SpoU rRNA methylase [Streptococcus sanguinis SK160]
          Length = 246

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  RI + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRI-DT 163

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D ++   S     +   LSS S    E + K +  AL++G EG+G+ P+    A  + H
Sbjct: 164 ADFIRLAQSSRLPILASTLSSTSIDYREVDSK-ESFALVMGNEGQGISPEMTAAADILVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243


>gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
           345-E]
 gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
           345-E]
          Length = 261

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +N++  + LD V DP N+G I+R+A A   D +I +K  +   S    +S+ G++  IP 
Sbjct: 114 KNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPV 173

Query: 190 IRISNLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   + TD L K   W  +T    +G S    +P  Q   +     I G EG G+  K  
Sbjct: 174 VTDVS-TDELIK---WKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGVSQKIL 229

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +    ++ +   +++LNVS A AV L+
Sbjct: 230 NISDKKIYIPLKSNVESLNVSIATAVILF 258


>gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           RP62A]
 gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 246

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           PT D  +  Q+L++ D + DP N+G ++R+A A   D I+  K  +      + +++ G+
Sbjct: 97  PTYDKTQAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + HIP I      D    +H +     G + ++             AL+LG EG+G+ P 
Sbjct: 156 IFHIPVI----FDDIYNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPD 211

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  T    + + G  ++LNV+ A ++ +Y
Sbjct: 212 LLKETTQNLTIPIYGKAESLNVAIAGSILMY 242


>gi|288957949|ref|YP_003448290.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
 gi|288910257|dbj|BAI71746.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
          Length = 271

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 8/244 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ--LLATKNALARLDWDANLPHPFPVK 94
           + + R     + LF+     V  +L   SR + +  L+A K   A     A LP   PV 
Sbjct: 20  DVRERDLVGRDGLFIAEGAVVVRSLVQSSRTLARSLLVAEKRVTALEPMLAALPPGTPVY 79

Query: 95  TVPPQTIDKIVGKEAVHQG-LALE---TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           T     +D+I G   +H+G LA+    + P  +  LDA      +++L  + +  N+G I
Sbjct: 80  TATQPVLDRIAGFP-LHRGILAVGERISIPSAADLLDACGPVARVVMLFGIGNHDNMGGI 138

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+A AF  D +I              + + GA   +P  R+    D L  +  + F+ +
Sbjct: 139 FRNAAAFGADAVILDPGCCDPLYRKAIRVSVGATLLVPTARLDAGEDPLALLDRFRFEAV 198

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            LS    + L       + AL+ G+EG GL P     A S+  + M G   +LNV+  + 
Sbjct: 199 ALSPAGAETLAALTPPRRAALLFGSEGPGLPPALLARARSV-RIPMAGGFDSLNVATTSG 257

Query: 271 VALY 274
           + L+
Sbjct: 258 IVLH 261


>gi|322391338|ref|ZP_08064808.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
 gi|321145764|gb|EFX41155.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
          Length = 179

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           + L+ V DP N+G ++R+A A    G+I + + +   S    +S  G+  H+P  R  + 
Sbjct: 38  LFLEDVQDPGNVGTMIRTADAADFTGVIVSSKSADIYSLKTLRSMQGSHFHVPIYRMPVE 97

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              +  +K +     T  LS +SK   E   + +  AL++G EG+G+ P   E A  + H
Sbjct: 98  TFVEEAKKGNLPILATT-LSQESKDYRELA-RLENFALVMGNEGQGISPFMVEQADQLVH 155

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 156 ISMKGQAESLNVAVAAGILMF 176


>gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145214792|gb|ABP44196.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 268

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 7/157 (4%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++  LD  R    + VL+ VND  N+G++ R+A     D +I     +        + + 
Sbjct: 108 VAEVLDGART---VAVLEGVNDHENLGSVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSM 164

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEG 237
           G    +P+ R +N    L  +    F+ + ++ D   P   +    +  ++IA+++GAEG
Sbjct: 165 GHALLVPFARAANWPADLNILRDNDFRLLAMTPDPTVPTLADAVSGLTEERIAILVGAEG 224

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL+  T  +A     + M     +LNV+ AAA+A Y
Sbjct: 225 PGLKEHTMRSADVRVRIPMARGTDSLNVATAAALAFY 261


>gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 235

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D V DP N+G I+R+A +F  D +I ++      +  + +S  G++ HIP IR+  L
Sbjct: 95  LICDGVQDPGNLGTIIRTAHSFGFDAVIVSETCVDEFNDKVIRSTQGSIFHIPVIRMP-L 153

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             A+ ++ +W                Q+IK   IA+++G+EG G+     +       + 
Sbjct: 154 DVAIAQIKAWNIPVYASYLGENTHNLQDIKTCPIAVVMGSEGSGVSDAVVDLCDGTVKIE 213

Query: 256 MPGIIKALNVSNAAAVALY 274
                ++LNV+ A+A+  Y
Sbjct: 214 TSQ-FESLNVAIASAIICY 231


>gi|145219176|ref|YP_001129885.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205340|gb|ABP36383.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
           265]
          Length = 250

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 112/253 (44%), Gaps = 29/253 (11%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLP----H 89
           Q+ ++  Q E     G+ TV        R++   L   ++L  L    D +A LP    +
Sbjct: 5   QRKKYRDQEEMFLGEGLRTV--------RELLLHLPGPDSLVALFLSPDAEALLPEAEAY 56

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVNDPHNI 147
              V +V      ++ G E+    +     P  SP   L      ++++ LD V DP N 
Sbjct: 57  RGKVFSVDSADFLRLTGTESPQGVVGAFRQPRFSPVDELPVTGEGRMVVALDGVQDPGNA 116

Query: 148 GAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           G ILR+A  F  D ++    T   Y+P       +S++G+L  +P+  + +LTD L+++ 
Sbjct: 117 GTILRTAAWFGADALLSGPGTVDLYNPKT----VRSSAGSLFSLPHYSVDSLTDELERLK 172

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK- 261
             G+  +  S + +   E     ++  L++G E  G+       A  +  + H  G ++ 
Sbjct: 173 QNGYGVLCSSLEGRDFREFTDWPERKVLVVGNEANGISSGVLSLADRLVLIPHGRGGVRV 232

Query: 262 -ALNVSNAAAVAL 273
            +LN S +AAV L
Sbjct: 233 ESLNASVSAAVLL 245


>gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
          Length = 252

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 114/248 (45%), Gaps = 14/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           + +KK+   N+K R     + LF+  G H V  A+ N    + +L+  ++      W+ +
Sbjct: 13  KAWKKLH--NKKDR---DKQGLFMVEGFHLVEEAIKNKDC-VKELIIRESIEVPAQWNID 66

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                   TV  + I K++      QG+        +   + +  +Q +++LD V DP N
Sbjct: 67  GIEI----TVVNEAIIKLLSDTETPQGII--AVCFQTKHAEIIHTAQKVLLLDAVQDPGN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R+A A   + II  +      +  + +S  GA+ H+P ++  +L + +  +    
Sbjct: 121 LGTIIRTADAAGVEAIIVGEGSVDVYNPKVVRSTQGAIFHLPIVK-GDLLEMISLLKERE 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G S  + K       +++ AL++G EG G+  K  E      ++ + G  ++LNV+
Sbjct: 180 IAVYGTSLQNGKVYTCVKPSNEFALVVGNEGNGVSEKVLEQTDQNLYIPIYGKSESLNVA 239

Query: 267 NAAAVALY 274
            A+ + LY
Sbjct: 240 IASGILLY 247


>gi|148240081|ref|YP_001225468.1| rRNA methylase [Synechococcus sp. WH 7803]
 gi|147848620|emb|CAK24171.1| rRNA methylase [Synechococcus sp. WH 7803]
          Length = 291

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 126/295 (42%), Gaps = 39/295 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I++ + E I S         RRN    K+++S   K+   S+ + + L   H V   
Sbjct: 1   MPVIARAEGEPISS---------RRNPL-IKRIRSLQSKAGRESE-QCVLLEVTHQVQEL 49

Query: 61  L--NNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQTID---KIVGKEAVHQGL 114
           L           +L T   L R  D  A LP P  V+ + P+ +      V  + V    
Sbjct: 50  LAQGEAWTDPLSVLVTPLWLQRHRDLLAQLPGPVQVQLMTPEALGAALTTVHPDGVACLW 109

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            L++ P   P      +   ++ LD + DP N+G +LR+A+A   + +       P  S 
Sbjct: 110 PLKSLPAAGP------HPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAGADPLGSK 163

Query: 175 VLAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIG-LSSDSK-----KPL 220
           V+ +SA+GAL  +PY R        +  L  AL+   + G Q +  L  D+      +P 
Sbjct: 164 VV-RSAAGALLSMPYQRFGPTDAQGVEQLATALKDARTRGLQVVATLVPDAAAGLPVQPY 222

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            Q        L+LG EG GL P+     +    L     +++LNV+ AAAV L +
Sbjct: 223 WQLDWCRPTVLVLGNEGAGLHPQLLGCCSHGVTLPHGRKVESLNVA-AAAVPLLL 276


>gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
 gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
          Length = 260

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           +++VLD + DP N+G ++R+A A    G++    T   Y+P     + +S  G+L H+P 
Sbjct: 112 MVLVLDRIRDPGNLGTLIRTADALGAAGVVLLENTADLYNPK----VVRSTMGSLFHLPV 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                  +  +     G+     + +  + + +    +K AL+LG+E +G+ P+    A 
Sbjct: 168 FTGVKTGELEEWCRQHGYALWATALEGAEDMTRLTWPEKTALVLGSEAEGVSPEILAAAD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M G  ++LNV+ A  + ++     F+
Sbjct: 228 QKVKIPMAGHAESLNVAVAGGIVMFEAARAFS 259


>gi|331006043|ref|ZP_08329383.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
 gi|330420152|gb|EGG94478.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
          Length = 266

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 97/211 (45%), Gaps = 17/211 (8%)

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPP--QTIDKIVGKEAVHQGLALETAPLLS 123
           R+I  L  +K AL+R+  +A       +  + P  Q+ +  +   ++ Q          S
Sbjct: 66  REIEVLYHSKQALSRISKNAKQDQGVCIDILCPKHQSYEDFLASVSLSQ----------S 115

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P    +R    L+ LD + +P N+G I+RS  A   DG++   +   +  +++ K+++G 
Sbjct: 116 PD-KTIR----LIALDRITNPQNLGMIIRSVCAGKIDGLLLPSKGCATIDSLVVKASAGT 170

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L   P +   +LT AL +    G    GLSS + + +  +  +  +  +LG E +G+  +
Sbjct: 171 LFKAPLLHCESLTGALHESKKQGATVYGLSSHATQSISDKQTDQFVIYVLGNETEGMSQE 230

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     + M   +++LNV+  A++  +
Sbjct: 231 ISTLCDKRISIPMNNGVESLNVAITASLLAF 261


>gi|56480145|ref|NP_708432.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|56383696|gb|AAN44139.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 345

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGH 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+   PL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLHDFRQAGYSVVNTSSEQGTPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|163840834|ref|YP_001625239.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162954310|gb|ABY23825.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 278

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A   D ++ + R +        + + GA+  +P+ R++   
Sbjct: 124 VLEDIVDHTNLGAIFRSAAALEIDAVLISPRCADPLYRRSIRVSMGAVFQVPWARLTQWP 183

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAH 253
           + L K+ S GF T+ L+ +       E+     +++ALILG EG+G              
Sbjct: 184 EDLSKLKSAGFSTVALALEQDSMTLDELATKLPERLALILGTEGEGPSAPVLAEVDQTVM 243

Query: 254 LHMPGIIKALN 264
           + M G + +LN
Sbjct: 244 IPMSGGVDSLN 254


>gi|319781799|ref|YP_004141275.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167687|gb|ADV11225.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 271

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 11/215 (5%)

Query: 72  LATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPT---L 126
           L  +N LA LD   +  P   PV       +D I G   +H+G LA+       P    L
Sbjct: 55  LVLENRLAGLDKILSKAPADLPVYVATSAVMDAIAGFH-MHRGILAMGRKGAPQPAEALL 113

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +    L++VL  + +  N+G+I R+A AF  D ++              + + GA   
Sbjct: 114 DGLPPRALVVVLVGIANHDNVGSIFRNAAAFGADAVLLDATCCDPLYRKAIRVSVGAALK 173

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP+   ++       +   GF+   LS   K  +    +++++AL LG EG+GL P    
Sbjct: 174 IPFASFTDTAGFTTTLARRGFEQFALSPRGKTDIRDAQRSERLALYLGTEGEGL-PDDLL 232

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +     + M     +LNV+ A+A+AL+    HF+
Sbjct: 233 ASLHNVRITMAEGFDSLNVAAASAIALH----HFS 263


>gi|162448040|ref|YP_001621172.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161986147|gb|ABX81796.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 233

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 4/143 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S  ++VLD V +P N+GAILRSA+AF+   ++ +   +   +    +++ GAL  + YI 
Sbjct: 90  SNQILVLDDVQNPDNVGAILRSALAFNFMHVVFSNHTADLYNDKTIRASGGALFDL-YIE 148

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             ++ + +      G+Q  G  +D+ K   +  K     L+LG EG+GLR KT E     
Sbjct: 149 RLDIHEFITLKKQNGYQVFG--ADAHKSELEPDKTKPFILVLGNEGQGLRSKTIELLDGR 206

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            ++     +++LNV+ A ++ +Y
Sbjct: 207 LNIETHH-VESLNVTVAGSILMY 228


>gi|319938687|ref|ZP_08013051.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
 gi|319811737|gb|EFW08003.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
          Length = 246

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 16/170 (9%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+  E A     T+ +V   + L  L+ V DP N+G I+R+A A   DG+  ++  +  
Sbjct: 83  QGIVAELA-FEEATIPSVLKGKYLF-LEDVQDPGNVGTIIRTADAAGYDGVFISQHSADI 140

Query: 172 ESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-----PLEQEI 224
            +    +S  G+  H+P  R+  ++  D L K          LS DS       PL    
Sbjct: 141 YNLKTLRSMQGSHFHLPIYRVKTADFLD-LAKQAQLPILATTLSKDSMDYRKLAPLSN-- 197

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                AL+LG EG+G+  +  E A  + H+ M G  ++LNV+ AA + ++
Sbjct: 198 ----FALVLGNEGQGISSEMAEAADYLIHISMKGRAESLNVAVAAGILIF 243


>gi|227495981|ref|ZP_03926292.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226834469|gb|EEH66852.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 287

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 9/142 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++ + VL+ + D  N+GA  RSA A   D ++ T   +        + + G +  +P+ 
Sbjct: 131 GARRVAVLEDLVDHTNVGAAFRSAAALGIDAVLVTPHCADPLYRRSVRVSMGTVFQVPWT 190

Query: 191 RISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRP 242
           RI +   AL ++H+ GF    + LS DS    E          + ++A++LG EG GL P
Sbjct: 191 RIDHWP-ALDELHAGGFTVAALALSEDSVSLGEFSASPACSGADSRVAVVLGTEGDGLAP 249

Query: 243 KTQETATSMAHLHMPGIIKALN 264
           +T   A ++  + M G + +LN
Sbjct: 250 RTIAAADAVVRIPMAGAVDSLN 271


>gi|254419713|ref|ZP_05033437.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185890|gb|EDX80866.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 270

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 10/257 (3%)

Query: 26  NHRDYKKMQSFNQ-KSRHTSQPENLFLYG---VHTVSAALNNPSRKIFQLLATKNALARL 81
           N  D  ++  F   + R  +  E LF+     V  V A+  +  R    LL  K   A  
Sbjct: 7   NDPDDARISGFRDIRERDLTGREGLFVAEGEVVVRVLASTASRCRPRALLLTEKRVAALS 66

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPT---LDAVRNSQLLMV 137
           D  A L    PV       +D+I G   +H+G LAL   P+  P    L AV +  + ++
Sbjct: 67  DVIAALAPSVPVYVAGQTVLDRIAGFP-LHRGILALGEKPVAPPVEHLLAAVADEDVFVI 125

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
              + +  N+G + R+A AF    ++  +           + + GA+   P+    +  D
Sbjct: 126 ASGIGNHDNMGGVFRNAAAFGARAVLLDETCCDPFYRKAIRVSVGAVLRSPFTVGGSAED 185

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +  M + G + + L+  +   L        +AL++G+EG GL P+          + M 
Sbjct: 186 LVAAMQTAGVEVLALTPSATLRLADYRPQGPVALMVGSEGPGL-PRVVIDRCRAVGVPMA 244

Query: 258 GIIKALNVSNAAAVALY 274
           G   +LNV+  +A+AL+
Sbjct: 245 GGFDSLNVAVTSALALH 261


>gi|91211908|ref|YP_541894.1| putative methyltransferase [Escherichia coli UTI89]
 gi|237705091|ref|ZP_04535572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073482|gb|ABE08363.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           UTI89]
 gi|226901457|gb|EEH87716.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 370

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  E++  I   
Sbjct: 223 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEYVQPITGD 281

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 282 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 341

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 342 IDGTGNVAGLNISVATGVLLGEWWRQN 368


>gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
           2522]
 gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
           2522]
          Length = 250

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 32/247 (12%)

Query: 40  SRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           SR   +   LFL  GVH +  AL          +  K  +  +D D  +P  + V  VP 
Sbjct: 20  SRKGREKTGLFLVEGVHLIEEALK-------AFIHMKELV--IDVDKEIPVEWKVSNVPQ 70

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMVLDHVNDPHNIGAILR 152
             +   V KE        ET        +   N  +       + LD + DP N+GAI+R
Sbjct: 71  VFVTNKVMKEICET----ETPQGFVAICELPDNKNVPLERGKFLFLDGLQDPGNVGAIIR 126

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGF 207
           +A A   +G++  +      +  + ++  G++ H+P  R+ +L +A+Q      +  +G 
Sbjct: 127 TADAAGINGVVLGEGTVDPFNGKVIRATQGSIFHLPVQRM-DLKEAVQICKEKNIPVFGT 185

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G + ++ +P       D  ALI+G EG G+     E      ++ + G  ++LNVS 
Sbjct: 186 SLQGSTYNAIQP------QDNFALIVGNEGSGVEDTLLEMTDQNLYIPIHGKAESLNVSI 239

Query: 268 AAAVALY 274
           A  + LY
Sbjct: 240 ATGILLY 246


>gi|218559502|ref|YP_002392415.1| methyltransferase [Escherichia coli S88]
 gi|218366271|emb|CAR04018.1| putative methyltransferase [Escherichia coli S88]
 gi|294490617|gb|ADE89373.1| RNA methyltransferase, TrmH family [Escherichia coli IHE3034]
 gi|307625870|gb|ADN70174.1| putative methyltransferase [Escherichia coli UM146]
 gi|315287997|gb|EFU47399.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 110-3]
 gi|323949235|gb|EGB45126.1| SpoU rRNA methylase [Escherichia coli H252]
 gi|323955817|gb|EGB51575.1| SpoU rRNA methylase [Escherichia coli H263]
          Length = 345

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  E++  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEYVQPITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|76809686|ref|YP_333959.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|76579139|gb|ABA48614.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710b]
          Length = 281

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 9/260 (3%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DS  A   R++  YK++++    +    + E   L G H  SA L+   +    ++ T  
Sbjct: 18  DSMKAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCVV-TDG 76

Query: 77  ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQL 134
           ALA  +    +    P + V  P  +   +       GL L  A P  +P L A R +  
Sbjct: 77  ALAHEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGT 133

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V D  N+G+ILRSA A   + +      + + S+ + +SA GA  H   + I  
Sbjct: 134 SVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHE 190

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             DA   +           S   + +        +A + G EG G+  + +E AT    +
Sbjct: 191 DVDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTI 250

Query: 255 HMPGIIKALNVSNAAAVALY 274
             PG +++LNV+ AAAV L+
Sbjct: 251 PQPGGMESLNVAAAAAVCLF 270


>gi|261416042|ref|YP_003249725.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372498|gb|ACX75243.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327067|gb|ADL26268.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 415

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +L ++D V DP N+G + R+++ F+  G+I  +      +  + + +SG    +P+    
Sbjct: 263 VLTLVDAVQDPGNLGTLFRTSLGFNSSGMILGRGTVSPFNPKVVRGSSGTFLRVPFEFDV 322

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           +L D +  + S G+  I     +K+ L +EI   K  K+A ++G EG G  P   E A  
Sbjct: 323 DLVDQINFLRSKGYTIIATDLHAKQSL-REIPAHKLRKMAFLVGNEGAGTNPYFIELADE 381

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M   +++LNV+ A  +  Y
Sbjct: 382 TVKIPMSSELESLNVAVAHGILSY 405


>gi|78779779|ref|YP_397891.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
 gi|78713278|gb|ABB50455.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
          Length = 237

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 16/162 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191
            ++VL+ + DP N+G++ R+A+A   D I+      P    VL +++SGA+ H+P++R  
Sbjct: 73  FVLVLERIQDPGNMGSLFRTALAAGVDAILLAGGAHPLSQKVL-RASSGAVFHLPFLRFD 131

Query: 192 ------ISNLTDALQKMHSWGFQTI------GLSSDSKKPLEQEIKNDKIALILGAEGKG 239
                 +++L  +L ++ + GF+          S  S KP  +       ALILG EG+G
Sbjct: 132 GTEEEILNSLCKSLYELSNVGFKIFTTSSHNKSSKKSSKPYWEIDWTKSTALILGNEGQG 191

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  K QE       +    ++++LNV+   AV L + +   A
Sbjct: 192 IHKKIQEAFNETITIPHSELVESLNVA-CVAVPLLLERKRVA 232


>gi|284929697|ref|YP_003422219.1| rRNA methylase [cyanobacterium UCYN-A]
 gi|284810141|gb|ADB95838.1| rRNA methylase [cyanobacterium UCYN-A]
          Length = 260

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 3/181 (1%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +TV P+ +  I     V+    + TA L  P   A  + +L ++L+ + DP N+G I+R+
Sbjct: 74  ETVSPEVLKSIT--TTVNPDGVIVTA-LSRPFDKAKTDIKLGLILERLQDPGNLGTIIRT 130

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           AVA + DGI  +      +++ + ++++GA    P +  SNL D +    + G   +   
Sbjct: 131 AVATNIDGIWLSSDSVNIDNSKVIRASAGAWFKAPLVITSNLKDIVMNYKNQGVNVVATL 190

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++KK            ++LG EG GL  +    A     + +   I++LNV+   A+ L
Sbjct: 191 PNAKKNYWDLDLTRPTIILLGNEGSGLSEQLVNMADETVKIPLEQNIESLNVAVTGALIL 250

Query: 274 Y 274
           Y
Sbjct: 251 Y 251


>gi|222086838|ref|YP_002545372.1| RNA methylase protein [Agrobacterium radiobacter K84]
 gi|221724286|gb|ACM27442.1| RNA methylase protein [Agrobacterium radiobacter K84]
          Length = 276

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 12/255 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
             RD ++     ++SR  ++   +   L G H  +A  +  + K+  LL    A    + 
Sbjct: 19  EFRDIRERDLTGRESRFIAEGTVVLRLLAGAH--AAGGDFVAEKV--LLLRNRAAGLEEI 74

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQG---LALETAPL-LSPTLDAVRNSQLLMVLD 139
               P   P+       +D IVG   +H+G   L   TA   +   L  +    L++V  
Sbjct: 75  ITAFPPDVPIYVADGSVLDGIVGFH-LHRGVLALGRRTADTGMDAFLGRLPKRPLVLVGC 133

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            +++  NIG++ R+A AF  D ++  +           + + G++  +PY R     D L
Sbjct: 134 GISNHDNIGSMFRNAAAFGADAVLLDETCCDPLYRKALRVSVGSVLTMPYRREFRDVDLL 193

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +   GF    LS   K  +      D IAL++G EG+GL  +   T  S+     PG 
Sbjct: 194 TALAERGFAIWSLSPRGKTDIRAVPPTDHIALVVGTEGEGLPQEILSTFGSVRIPQAPG- 252

Query: 260 IKALNVSNAAAVALY 274
           + +LNV+ A+ +AL+
Sbjct: 253 LDSLNVATASGIALF 267


>gi|125623434|ref|YP_001031917.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492242|emb|CAL97171.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070181|gb|ADJ59581.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 252

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 21/256 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---- 83
           +D KK++   +      +  +  + G H +  AL      I Q+   +N LA+L      
Sbjct: 7   KDNKKVKEARKLLTKKYRKNSYLIEGFHLLEEALK-AGHSIKQIFVEENKLAKLTAMIGS 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           + +L     V  V    +  +   E+  QGL  E A ++   +D   +  LL  L++V D
Sbjct: 66  EKSLT-DLSVNLVSKDVLKSLADSES-PQGLIAEVA-IIEEVIDFSASKFLL--LENVQD 120

Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNL-TDA 198
           P N+G ++R+A A     +I    T   YSP     + +S  G+  H+   R++     A
Sbjct: 121 PGNVGTMIRTADAAGFSAVILLGETADLYSPK----VMRSMQGSNFHLAIARMNEEECFA 176

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             K       T  LS++S     + ++    AL++G EG G+     E+A  + H+ MPG
Sbjct: 177 ALKQAKISILTTTLSANSVSY--KTVEESSFALVMGNEGAGVSDFAVESADKLVHIDMPG 234

Query: 259 IIKALNVSNAAAVALY 274
             ++LNV+ AA + ++
Sbjct: 235 QAESLNVAVAAGILMF 250


>gi|229917708|ref|YP_002886354.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
 gi|229469137|gb|ACQ70909.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
          Length = 254

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 5/147 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R + + ++ + V+DPHN  A+LRSA AF    + +   R     ++++AKSA   ++ + 
Sbjct: 54  RTNHITILTEGVDDPHNQSAVLRSADAFGVQTLHVVEGRAKFKPNSIIAKSADRWVDVVE 113

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +  I    DAL++    G+Q    + S+   PLE+   +    L+ G E  G+       
Sbjct: 114 HGSIEEAIDALKES---GYQVYATALSEEAIPLEEVDVSKPTVLLFGNEHSGVSETALHK 170

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G +++LN+S AAA++LY
Sbjct: 171 ADGNFVIPMQGYVQSLNISVAAAISLY 197


>gi|268611052|ref|ZP_06144779.1| hypothetical protein RflaF_16350 [Ruminococcus flavefaciens FD-1]
          Length = 269

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 12/151 (7%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL----AKSASGALEHIPYIRI 192
           VL+ V +  NIGA+ RSA A   D ++ T    PS S  L     + + G +  +P+  +
Sbjct: 122 VLEDVMNQTNIGAVFRSAAALGFDAVLLT----PSSSDPLFRRSVRVSMGTVFQLPWTYL 177

Query: 193 SNLT-DALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETA 248
            N + D + ++ + GF T  + L  D+ K  +  + + D++A++LG EG+GL+ +T ++ 
Sbjct: 178 ENGSPDYIGELRNAGFVTAAMALRRDTIKINDPRLASVDRLAVLLGTEGEGLKDETIDSC 237

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   + +LNV+ A+AVA +    H
Sbjct: 238 DYTIKIPMSHGVDSLNVAAASAVAFWQLGKH 268


>gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH
           391-98]
          Length = 254

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 114/254 (44%), Gaps = 14/254 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  + 
Sbjct: 13  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--ADIVTELIVSDQTDLPKDWIVSD 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+    A       +   ++   ++LD + DP N+
Sbjct: 67  VEMYIV----PEPIVKVLRETETTQGVF---AVCEKQEKEVELSNGKFLLLDGLQDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +    + ++ + +S  G++ H+P ++  NL + + K+ +   
Sbjct: 120 GTIIRTADAAGVHAVVLGEGCVDAYNSKVLRSTQGSIFHLPVVK-GNLEEWIDKLKTHNV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G + ++  P  +       ALI+G EG G+            ++ + G  ++LNV+ 
Sbjct: 179 PVYGTALENGVPYGEITPTGSFALIVGNEGNGVHQDILAKCDQNLYIPIYGGAESLNVAV 238

Query: 268 AAAVALYITQNHFA 281
           AA +  Y  Q+  A
Sbjct: 239 AAGILTYYLQSPVA 252


>gi|259907580|ref|YP_002647936.1| putative methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224963202|emb|CAX54686.1| Predicted tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283477422|emb|CAY73338.1| hypothetical protein EPYR_00958 [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ + +PHN+G I+RS   F   G++     S  ES    ++A G  EH+  I   
Sbjct: 198 CVVALEDIGNPHNLGGIMRSCAHFGAKGLLVDD-ASLLESGAAVRTAEGGAEHVRAISGE 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L      G+  +  SS    PL       K+ L+LG E  GL   T         
Sbjct: 257 SFAAGLDAFRQAGYTIVTTSSHQGVPLSTAELPAKMVLVLGQERDGLSDSTFRQGDLSVS 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 317 ISGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|319898475|ref|YP_004158568.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           clarridgeiae 73]
 gi|319402439|emb|CBI75980.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           clarridgeiae 73]
          Length = 271

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 10/194 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P+  VP + +D I G   VH+G+      +  P L   L  +    L+ VL  +++  N+
Sbjct: 78  PIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPSLKEFLQNLPEKALIPVLCGISNHDNM 136

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A AF+  GII  K           + ++GA  ++PY +  ++   +  + +  F
Sbjct: 137 GAIFRNAAAFASTGIIVDKTSCDPLYRKSIRVSAGAALNVPYTQGDDIDSIITALSNADF 196

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               LS  + + L+        ALI G EG GL     + + ++  + M     ++NV+ 
Sbjct: 197 HLYALSPSAPRYLKDTKAIKHTALIFGTEGNGLPAHVLQKSETL-RIPMAYGFDSINVAT 255

Query: 268 AAAVALYITQNHFA 281
           A+ +AL     HFA
Sbjct: 256 ASGLAL----AHFA 265


>gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 261

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 123/281 (43%), Gaps = 41/281 (14%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSA 59
           N+I+  ++++I         KL+++ R+ +K + F  +     T  PE  +LY V+  S 
Sbjct: 4   NMITTTQNKQI-----KQIIKLKKSARERRKQELFLVEGIRMFTEIPEE-YLYKVYA-SE 56

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              N  R IF+ +                    V+ V PQ + +I         LAL   
Sbjct: 57  DFYNEHRVIFEHM-------------------DVELVSPQVMKEISDTMTPQGVLAL--V 95

Query: 120 PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSES 173
            ++  +L+ +   +  L +VL+++ DP N+G ILR+      +G+I    T   Y+P   
Sbjct: 96  KMMKYSLEDLLEQEKPLFLVLENLQDPGNLGTILRTGEGAGINGVIMSHDTVDIYNPK-- 153

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             + +S  G++  +P++ + +L +  + M      T     +     +++ +    A  +
Sbjct: 154 --VTRSTMGSIFRVPFVYVDDLLEVAETMKQKNIITYAAHLNGTDYTKEDYQKG-TAFFI 210

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G EG GL  K  +       + M G +++LN + A+ + +Y
Sbjct: 211 GNEGNGLTDKLTDKVQKKIKIPMCGKVESLNAAMASGLLVY 251


>gi|322697910|gb|EFY89685.1| RNA methyltransferase, putative [Metarhizium acridum CQMa 102]
          Length = 556

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 120/296 (40%), Gaps = 82/296 (27%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDA--NLP--HPFPVKTVPPQT--- 100
           FLYG   V AAL    R++++L     +N     D DA  NL      PV  VP +    
Sbjct: 231 FLYGRSVVKAALQQGRRQLYKLYVYGGENRRGFDDNDAIINLAKARGVPVTIVPNEDQRL 290

Query: 101 IDKI-VGKEAVHQGLALETAPL-------------------------------------- 121
           +DK+ +G+   H G  LET+PL                                      
Sbjct: 291 MDKMSMGRP--HNGFVLETSPLPQLPVKALGSLEESPSKLGFHIELVHQTMEQKAINGEN 348

Query: 122 -LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P  +      L+++L  + DP N+GA+LR+A     D +  T R S + + V+ KSA
Sbjct: 349 TFVPKANNSATKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKSA 408

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-----------------LSSD---SKKPL 220
           +GA E +    + +  + L+   + G++T                   +S+D      PL
Sbjct: 409 AGAAEEVTIFTVDSPVEFLKGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDYVEQTSPL 468

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-----ALNVSNAAAV 271
           +Q        L+LG EG GL P+  + A     L +P  ++     +LNVS AA +
Sbjct: 469 DQH----PCVLVLGNEGHGL-PRQVKVAADF-ELSVPRFVQGSSVDSLNVSVAAGL 518


>gi|320160779|ref|YP_004174003.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994632|dbj|BAJ63403.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 271

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 18/156 (11%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGA 183
           +V N +  + LD V DP N+G ILR+  A    G+I    +T  Y PS      +++ GA
Sbjct: 110 SVENGKPWVALDSVADPGNLGTILRTLDAVGGAGVILLDQSTDPYDPS----CVRASMGA 165

Query: 184 LEHIPYIRISNLTDALQKMHSW-----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           L  +  +R S      ++   W     G   IG S  +K+         ++ L++G+E  
Sbjct: 166 LFDLHLVRTS-----FEQFRDWIKRQTGVALIGTSGAAKQDYHDFPYPSRLVLLMGSERL 220

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           GL+P   E    +  + M G   +LN++ A AV LY
Sbjct: 221 GLQPYHLELCDEVVRIPMVGRSDSLNLAVATAVVLY 256


>gi|15639048|ref|NP_218494.1| hypothetical protein TP0054 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025288|ref|YP_001933060.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322312|gb|AAC65050.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017863|gb|ACD70481.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059469|gb|ADD72204.1| RNA methyltransferase, TrmH family [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 319

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 20/178 (11%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQL---------LMVLDHVNDPHNIGAILRSAVAFSCDG 161
           HQG+A   A +  P   AV +SQ+         +++LD V D HN+GAI+RSA  F    
Sbjct: 89  HQGVA---ATIDEPRFPAVTHSQVEFWVQRREFVVLLDRVGDAHNLGAIIRSAAFFGVHS 145

Query: 162 IITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           ++ +  R     ++   + A G +E +  +R +N  + L+ M +     +G S  + + L
Sbjct: 146 LVVSDCRQQAQVTSATYRVAQGGMEFVQLLRCTNAQEVLE-MCAGKMTRVGASPHAFRSL 204

Query: 221 EQEIKN-----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + + N     + + L+LG E  GL          +  +   G +++LNV+ A A+ L
Sbjct: 205 TR-LSNILSPEEAVILVLGNEETGLSEHLTAHCDHLCRIAGSGQVESLNVAQAGALFL 261


>gi|78776544|ref|YP_392859.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
 gi|78497084|gb|ABB43624.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
          Length = 249

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 4/166 (2%)

Query: 112 QGLALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           QG+A++         + ++N +   L+ LD + +P N+G I+RS  A   DG+I  K+ S
Sbjct: 85  QGVAIDIIANSYKNANEIKNLKKFKLLALDGIQNPQNLGMIIRSCAAGYIDGVILPKKNS 144

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              S ++ K+++G L  +P    + L + L+++         LSS +KK +    + DK 
Sbjct: 145 AKISPLVIKASAGTLFKLPIYYCNTLDEVLKELKDTKIYL--LSSHAKKSIYDLRQEDKS 202

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +LG E  G+  + +       ++ M   +++LNV+  A++  ++
Sbjct: 203 IFVLGNESDGVSREIEALCNDSINIPMNRDVESLNVAVTASLIAFM 248


>gi|255536513|ref|YP_003096884.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
 gi|255342709|gb|ACU08822.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
          Length = 197

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 11/157 (7%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T    + + L +VLD+V   HN+GAI R+A AF  + ++            + K+A GA 
Sbjct: 38  TFKQTQKTGLTVVLDNVRSMHNVGAIFRTADAFLIEKVVLCGITPQPPHREIHKAALGAT 97

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEI-KNDKIALILGAEGKGLR 241
           E + +I +  ++ AL+ +    +  IG+  +S+S+K  +  I K+ K A++LG E  GL 
Sbjct: 98  ESVEWIYVDTVSAALETLKKENYTVIGIEQTSNSQKIGDYHISKDQKYAVVLGNEVDGL- 156

Query: 242 PKTQETATSM--AHLHMP--GIIKALNVSNAAAVALY 274
               E A ++  A L +P  G   +LNVS    + ++
Sbjct: 157 ---SEDALALYDAFLEIPQLGTKHSLNVSVCGGIVMW 190


>gi|305681831|ref|ZP_07404635.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658304|gb|EFM47807.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 266

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+ +L+ V    NDP N G ++R + A   D +I        +S+   ++++G++ H+P 
Sbjct: 116 RSPRLVTVAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVPV 175

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQET 247
            R  ++ + L+ +   G Q +  ++D +  L    E+     A + G E  GL P+  E 
Sbjct: 176 ARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLARPTAWLFGNEAHGLGPELMEL 235

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + + G  ++LN++ AA++ L+
Sbjct: 236 ADHRVAIPIKGSAESLNLATAASICLW 262


>gi|22002552|gb|AAM82703.1| rRNA methylase-like protein [Synechococcus elongatus PCC 7942]
          Length = 258

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 8/141 (5%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           ++ + DP N+G I+R+A A   DG+ +T     P    VL ++++G    +P   I+  T
Sbjct: 114 VETLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVL-RASAGQWFRLP---IAIAT 169

Query: 197 DALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           D  Q + SW   G+Q +     +   L Q        L+LG EG GL P     A S   
Sbjct: 170 DLGQTLRSWQQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVT 229

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +     +++LNV+ AAA+ LY
Sbjct: 230 IPQAAGVESLNVAIAAALLLY 250


>gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
 gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
          Length = 255

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 12/252 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  +K+++   +  R   +     L GVH V A        +  L+  ++A A  +  
Sbjct: 7   RDNAFFKQLKRLAESGRERRKTGQTLLDGVHLVEA-YEKAFGPLENLIVAESAAAGGEIA 65

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQLLMVLDHVN 142
           A L     V  V    + + +G      GL L  AP+   T  +D  +++ LL   D V 
Sbjct: 66  AYLEGRQAV--VLADALMRDLGLVDTPSGL-LAVAPMPQRTALVDLGKDAVLL---DGVQ 119

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+A A     ++     + + S  + ++  GA  H   + I    D    M
Sbjct: 120 DPGNVGTLLRTAAASGVKQVLMAPGCASAWSPKVLRAGQGA--HF-VLAIHEEADLAAFM 176

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             +   T     D    L +      +A I GAEG G+R +  ETA     + MPG +++
Sbjct: 177 ADYRGTTAVTCLDGATSLYEARWTGPLAWIFGAEGLGVRRELIETAKLRIKIPMPGAVES 236

Query: 263 LNVSNAAAVALY 274
           LNV  AAAV L+
Sbjct: 237 LNVGAAAAVCLF 248


>gi|225022603|ref|ZP_03711795.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944511|gb|EEG25720.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 266

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+ +L+ V    NDP N G ++R + A   D +I        +S+   ++++G++ H+P 
Sbjct: 116 RSPRLVTVAVGTNDPGNAGTLVRVSDALGADAVIFAGDTVDPQSSKAVRASAGSVFHVPV 175

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQET 247
            R  ++ + L+ +   G Q +  ++D +  L    E+     A + G E  GL P+  E 
Sbjct: 176 ARSRDVGEVLRLLKGRGLQLMATAADGEVDLGTANELLARPTAWLFGNEAHGLGPELMEL 235

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + + G  ++LN++ AA++ L+
Sbjct: 236 ADHRVAIPIKGSAESLNLATAASICLW 262


>gi|229825756|ref|ZP_04451825.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
           49176]
 gi|229790319|gb|EEP26433.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
           49176]
          Length = 279

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 72/140 (51%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VL+   DP N+G I+R+A A    G+I  K      +  + +S  G++  +P+  + +
Sbjct: 138 LLVLEDTADPGNLGTIMRTAEAAGVTGVIMGKGTVDIFNPKVVRSTMGSIFRLPFTYVED 197

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + ++++   G          +K  +    + + A+I+G E +GL  +  + A +   +
Sbjct: 198 LKETIKELKKSGISFYATHLKGEKSYKDIKYSGRSAIIVGNEARGLSDEVADLADTYVLI 257

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + AAA+ +Y
Sbjct: 258 PMQGKVESLNAAVAAALMMY 277


>gi|188577836|ref|YP_001914765.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522288|gb|ACD60233.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 240

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GA+LRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 92  LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 151

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF       D  + +       ++  ++GAE +G+             
Sbjct: 152 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 211

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 212 IRGSGKVESLNVASATAV 229


>gi|261250548|ref|ZP_05943123.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260939117|gb|EEX95104.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 227

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    GI       P E   L+ +++GA   +  
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADAT---GIHKVHAVWPHEMRTLSHTSAGARNWVDV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               N+ DA+ ++ + G Q +  + SD+     +       A+ILG+E  G   K ++ A
Sbjct: 73  ETHDNIEDAIAELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + M G++++LNVS A+AV LY  Q
Sbjct: 133 DQDIIVPMVGMVQSLNVSVASAVILYEAQ 161


>gi|332367397|gb|EGJ45130.1| SpoU rRNA methylase [Streptococcus sanguinis SK1059]
          Length = 269

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 128 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 186

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D ++   S     +   LSS S    E + K +  AL++G EG+G+ P+    A  + H
Sbjct: 187 ADFIRLAQSSRLPILASTLSSTSIDYREVDSK-ESFALVMGNEGQGISPEMTAAADILVH 245

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 246 ISMKGQAESLNVAVAAGILIF 266


>gi|320539497|ref|ZP_08039166.1| putative methyltransferase [Serratia symbiotica str. Tucson]
 gi|320030622|gb|EFW12632.1| putative methyltransferase [Serratia symbiotica str. Tucson]
          Length = 360

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPY 189
           +  ++ L+ V +PHN+GAI+RS   F  +G++      P+  ES    ++A G  EHI  
Sbjct: 211 TDCVLALEEVGNPHNLGAIVRSCAHFGVNGVLLQ---DPAVLESGAAVRTAEGGAEHIKA 267

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I   +    L      G+  +  SS     L Q     KI L+L  E  GL     +   
Sbjct: 268 INADDFLSVLDIFRQAGYTIVTTSSHKGTALAQAKLPAKIVLVLRQERDGLSDSAWQQGD 327

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
               +   G + +LNVS A  + L  +  QN 
Sbjct: 328 MSISIGGTGKVDSLNVSVATGILLADWWRQNQ 359


>gi|295690458|ref|YP_003594151.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295432361|gb|ADG11533.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 268

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 39  KSRHTSQPENLFLYGVHTV-SAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTV 96
           K R     E LF+    TV  A + +   ++  LL       +L D  A+LP   PV   
Sbjct: 22  KERDLVGREGLFIAEGETVLRAFVRDALERVVSLLIDPKRRDKLEDVFASLPEDVPVHFA 81

Query: 97  PPQTIDKIVGKEAVHQG-LALETAP---LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
               +D I G   +H+G LA+   P     +  L  +    +++VL  + +  NIG I R
Sbjct: 82  DQAVLDSIAGFH-LHRGVLAVGRKPQPVAANALLAGLPARAVVLVLCGIANHDNIGGIYR 140

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  D +I              + + GA   +P  R+    D    + + GF+ + L
Sbjct: 141 NAAAFGADAVILDADCCDPLYRKAIRVSVGAALSVPTARLGRGEDIADLLANTGFEALAL 200

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S  + + L +     + A++LGAEG GL P     A ++  + M     +LNV+  + + 
Sbjct: 201 SPSASEVLARLKPAPRTAVLLGAEGPGLSPDVMARARTVG-VPMAKGFDSLNVATTSGIV 259

Query: 273 LY 274
           L+
Sbjct: 260 LH 261


>gi|296119687|ref|ZP_06838245.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967570|gb|EFG80837.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 267

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 71/142 (50%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +LL V    ++P N G ++R++ A   DG+I          + ++++++G+L HIP  R 
Sbjct: 118 KLLSVPVETSEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVSRASAGSLFHIPTARD 177

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +N+ D L K+ +   Q +  +      L++       A + G E  GL  +  + A    
Sbjct: 178 TNIKDVLGKLRASNLQILATAPQGDATLDEVDLTKPTAWLFGNEAHGLSQELLDAADIRV 237

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + + G  ++LN++ AA++ LY
Sbjct: 238 SIPLRGRAESLNLATAASICLY 259


>gi|84624847|ref|YP_452219.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368787|dbj|BAE69945.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 303

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GA+LRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 155 LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 214

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF       D  + +       ++  ++GAE +G+             
Sbjct: 215 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 274

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 275 IRGSGKVESLNVASATAV 292


>gi|25028075|ref|NP_738129.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
           YS-314]
 gi|23493359|dbj|BAC18329.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 282

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 2/145 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L+ V     +P N G ++R A A   D ++        +   + ++++G+L H+P  R
Sbjct: 127 SRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVPVAR 186

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETAT 249
             N+ D L ++ S G Q +  ++D +  L+   E+ +   A + G E  GL  +    A 
Sbjct: 187 NVNIDDVLGQLRSQGLQILATAADGEVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKAD 246

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LN++ AA++ LY
Sbjct: 247 HRVRIPIRGRAESLNLATAASICLY 271


>gi|238060046|ref|ZP_04604755.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237881857|gb|EEP70685.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 297

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 26/259 (10%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAAL--NNPSRKIFQLLATKNALARLD-WD 84
           DY+ +     ++R    P  LF+  G   +  AL    P+R         + LA LD  D
Sbjct: 40  DYRALTDVELRTRW-EPPHGLFIAEGELVLRRALRAGYPARSFLVDAKRVDQLADLDTGD 98

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           A      PV    P  +++  G   VH+G+  +    PL       + +++  ++L+ VN
Sbjct: 99  A------PVYAATPDVLERATGFH-VHRGVLASFRRKPLPD-AAGVLADARRAVILEDVN 150

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL----AKSASGALEHIPYIRISNLTDA 198
           +  N+GAI R+  A   D ++     SPS +  L     + + G +  +PY R+    +A
Sbjct: 151 NHTNLGAIFRAVAALGVDAVL----LSPSCADPLYRRSVRVSMGEVFAVPYARLEPWPEA 206

Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           L  + + GF  + ++ +    P+++    +  + AL+LGAEG GL     + + +   + 
Sbjct: 207 LAGVRAAGFTVLAMTPAPDAVPIQRLTVAQRARSALLLGAEGAGLTRAALDASDARVVIP 266

Query: 256 MPGIIKALNVSNAAAVALY 274
           M   + +LNV+ A AVA +
Sbjct: 267 MRRGVDSLNVAAATAVACW 285


>gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M]
 gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M]
          Length = 279

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 12/253 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWD-AN 86
           D++ + S +++    S    +   GV  V   L   SR     LL T   L  L  D A 
Sbjct: 25  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLA--SRFSPRALLGTDRRLLELKDDLAG 82

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPH 145
           +  P+    V P  + ++VG   +++G+    + ++ P++   V  ++ + VL+ VND  
Sbjct: 83  VGVPY--YRVSPDVMAQVVGFH-LNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHE 139

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I R+A     D +I     +        + + G    +PY R ++    L  +   
Sbjct: 140 NLGSIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKER 199

Query: 206 GFQTIGLS--SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           GF+ + L+   D++   E    + +  +AL++GAEG GL       +     + M     
Sbjct: 200 GFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTD 259

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AAA+A Y
Sbjct: 260 SLNVATAAALAFY 272


>gi|332523947|ref|ZP_08400199.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315211|gb|EGJ28196.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 245

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L+ V DP N+G ++R+A A   DG++ +++ +   +    +S  G+  HIP  R +++
Sbjct: 104 LLLEDVQDPGNLGTMIRTADAAGFDGVLLSEKSADIFNQKTLRSMQGSHYHIPVWR-TDI 162

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
               + M S     +  + S+     +Q        L++G EG+G+  K  E ++ + H+
Sbjct: 163 YAFCETMKSKEMPILATTLSEQSIDYKQLGTLTDFILVMGNEGQGISTKMAEHSSQLVHI 222

Query: 255 HMPGIIKALNVSNAAAVALY 274
            MPG  ++LNV+ AA + ++
Sbjct: 223 SMPGQAESLNVAVAAGILIF 242


>gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
 gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
          Length = 223

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 3/148 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L++VLD V   HNIGA+ R+A AF  D I      +      L K+A GA   + +
Sbjct: 64  RKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTALGAEFTVDW 123

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQE 246
               N  DA+  +H  G+  + +       +  ++   K+ K A++ G E KG++ +   
Sbjct: 124 KYFKNTQDAVNDLHKDGYVVLAIEQCEGSTMLDDLILEKDKKYAIVFGNEVKGVQQEVVN 183

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      +   G   +LNVS  A + L+
Sbjct: 184 SCDGCIEIPQYGTKHSLNVSVTAGIVLW 211


>gi|319779560|ref|YP_004130473.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
 gi|317109584|gb|ADU92330.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
          Length = 259

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD + DP N+G +LR+ VA     +   K  S + S+ + +SA G+   +      +
Sbjct: 110 IVLLDSIQDPGNLGTLLRTCVAVGISDVALNKGCSSAWSSKVLRSAQGSHAFLKIYHHVD 169

Query: 195 LTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L   ++ + + G++ I  + D S K L +   N KIA I G EG G+  +          
Sbjct: 170 LIGLIEILQAGGYEIIATALDLSSKNLFELNLNKKIAWIFGNEGNGVSSEILSLGLEKCI 229

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + +   I++LNV  AA++ LY
Sbjct: 230 IPINQNIESLNVGVAASICLY 250


>gi|313206869|ref|YP_004046046.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312446185|gb|ADQ82540.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315023943|gb|EFT36945.1| putative rRNA methylase [Riemerella anatipestifer RA-YM]
 gi|325335693|gb|ADZ11967.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 257

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 11/145 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSPSESAVLAKSASGALEHIPYI 190
           +++++ +  P N+GAILRS  AF  D +I T      Y+P+    + +S+ G L  +   
Sbjct: 112 VIIVESIEKPGNLGAILRSCEAFGIDALIVTDPKVDFYNPN----VIRSSVGCLFGMNIF 167

Query: 191 RISNL-TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +  N  T A  K H +   T  +S D++   +++ K  K ALI G E  G+    +  A 
Sbjct: 168 QADNQSTLAFLKKHHFKVYTTFMSEDAQLIHQKDFKT-KTALIFGTEHSGISDFWKGKAE 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           ++  + M G I +LN+SNA AV+ Y
Sbjct: 227 NIL-VPMAGTIDSLNLSNAVAVSCY 250


>gi|259505627|ref|ZP_05748529.1| rRNA methylase [Corynebacterium efficiens YS-314]
 gi|259166792|gb|EEW51346.1| rRNA methylase [Corynebacterium efficiens YS-314]
          Length = 272

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 2/145 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L+ V     +P N G ++R A A   D ++        +   + ++++G+L H+P  R
Sbjct: 117 SRLVSVPVETREPGNAGTLIRVADAVGADAVVFAGETVDPQGPKVVRASAGSLFHVPVAR 176

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETAT 249
             N+ D L ++ S G Q +  ++D +  L+   E+ +   A + G E  GL  +    A 
Sbjct: 177 NVNIDDVLGQLRSQGLQILATAADGEVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKAD 236

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LN++ AA++ LY
Sbjct: 237 HRVRIPIRGRAESLNLATAASICLY 261


>gi|254443559|ref|ZP_05057035.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198257867|gb|EDY82175.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 258

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++LD V DP N G+++R+A  F  DG++  K  +  E+   +++  G L ++P     +
Sbjct: 110 LLLLDEVGDPGNCGSMVRAADWFGLDGVVFGKGCAELENGKTSRATMGGLFYLPVAVGVD 169

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAH 253
           L  A+ ++   G Q      D      ++ +  ++ AL++G E +G+     E A     
Sbjct: 170 LAAAVSELRRSGVQVFTTELDESAVSLRDFEFPERCALVIGNEARGVSAAISELADGKLF 229

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           +   G  ++LN + AAAV L
Sbjct: 230 VERFGSGESLNAAVAAAVFL 249


>gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 223

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +++++V+ PHN+ AILR+A A    G+      +P+         SG  E   Y
Sbjct: 16  RQPDLTVLMENVHKPHNLSAILRTADAV---GVYEAHAVNPTGGVPTYNETSGGSEKWVY 72

Query: 190 IRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +R+  ++  A+Q +   GF       SD             +A++LGAE  G+ P+    
Sbjct: 73  LRVHPDIATAVQHLKERGFLVYAAHLSDEAVDYRAVDYTRPVAVLLGAEKWGVSPEAAAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS AAAV L+  Q  
Sbjct: 133 ADRHIVIPMMGMVQSLNVSVAAAVILFEAQRQ 164


>gi|262282150|ref|ZP_06059919.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
 gi|262262604|gb|EEY81301.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
          Length = 246

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 6/142 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--S 193
           + L+ V DP N+G I+R+A A   DGI  ++  +   +    +S  G+  H+P  R+  +
Sbjct: 105 LFLEDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRSMQGSHFHLPIYRLATA 164

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMA 252
           NL D L K          LS DS     Q++K  K   L++G EG+G+    +  A  + 
Sbjct: 165 NLID-LAKKSDLPILASTLSDDSID--YQKLKGSKNFILVMGNEGQGISSMIEAAADQLV 221

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
           H+ M G  ++LNV+ AA + ++
Sbjct: 222 HIPMKGKAESLNVAVAAGILIF 243


>gi|320534170|ref|ZP_08034700.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133606|gb|EFW26024.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 278

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 27/195 (13%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL------------MVLD 139
           PV   P + ++ I G   +H+G     A +  P L  V  S+LL             +L+
Sbjct: 86  PVFVAPEEVLESITGFH-LHRG---ALAAMNRPELIGV--SELLSAARGGAGARRVAILE 139

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI     A+
Sbjct: 140 DLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIERWP-AM 198

Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETATSM 251
            ++H  GF    L+ SD+   L++          + ++A++LG EG GL  +T   A  +
Sbjct: 199 DELHGQGFTVAALALSDTSVALDEFAASTACTGADSRVAVVLGTEGDGLSHRTIAAADEV 258

Query: 252 AHLHMPGIIKALNVS 266
             + M G + +LNV+
Sbjct: 259 VRIPMAGGVDSLNVA 273


>gi|270292099|ref|ZP_06198314.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
 gi|270279627|gb|EFA25469.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
          Length = 252

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 19/179 (10%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ I  IV KE V  GL         P L   R  + L  L+ V DP N+G ++R+A A 
Sbjct: 88  PQGIVAIVQKEEV--GL---------PDL---RQGKFLF-LEDVQDPGNVGTMIRTADAA 132

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTIGLSSD 215
              G+I + + +   S    +S  G+  H+P  R  ++   +  +K       T  LS +
Sbjct: 133 GFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPVATFVEGAKKSDLPILATT-LSRE 191

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           SK   E     D + L++G EG+G+     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 192 SKDYRELSPLEDFV-LVMGNEGQGISSVMAESADQLVHISMKGRAESLNVAVAAGILMF 249


>gi|58583011|ref|YP_202027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427605|gb|AAW76642.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 353

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GA+LRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 205 LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 264

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF       D  + +       ++  ++GAE +G+             
Sbjct: 265 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 324

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 325 IRGSGKVESLNVASATAV 342


>gi|269126608|ref|YP_003299978.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311566|gb|ACY97940.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 186

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 1/144 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + +L ++++ V  P N+G+I+R+   F  + +      +P       K+A G    +P+ 
Sbjct: 27  HGRLGLIVESVTQPFNVGSIVRTCAVFGVEHLWLAGNTTPPTHRNAGKTALGTERLVPWS 86

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +      A+++ H  G + I L  +    PL +      + L +G E  G  P   E A 
Sbjct: 87  QAGTPQQAVREAHDQGLRVIALELAGGAIPLHRAPLEGDVCLAVGGEDHGCSPALLEAAD 146

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
           ++A++   G + +LNV+ A A+AL
Sbjct: 147 AVAYIPQIGRVGSLNVAVATAIAL 170


>gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
 gi|167709677|gb|EDS20256.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
 gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2]
          Length = 257

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 114/261 (43%), Gaps = 36/261 (13%)

Query: 22  KLRRNHRDYKKMQSFNQKS--RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           KL+++ R+ +K + F  +     T  PE  +LY V+  S    N  R IF+ +       
Sbjct: 15  KLKKSARERRKQELFLVEGIRMFTEIPEE-YLYKVYA-SEDFYNEHRVIFEHM------- 65

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMV 137
                        V+ V PQ + +I         LAL    ++  +L+ +   +  L +V
Sbjct: 66  ------------DVELVSPQVMKEISDTMTPQGVLAL--VKMMKYSLEDLLEQEKPLFLV 111

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++ DP N+G ILR+      +G+I    T   Y+P     + +S  G++  +P++ + 
Sbjct: 112 LENLQDPGNLGTILRTGEGAGINGVIMSHDTVDIYNPK----VTRSTMGSIFRVPFVYVD 167

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L +  + M      T     +     +++ +    A  +G EG GL  K  +       
Sbjct: 168 DLLEVAETMKQKNIITYAAHLNGTDYTKEDYQKG-TAFFIGNEGNGLTDKLTDKVQKKIK 226

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + A+ + +Y
Sbjct: 227 IPMCGKVESLNAAMASGLLVY 247


>gi|332358339|gb|EGJ36165.1| SpoU rRNA methylase [Streptococcus sanguinis SK355]
          Length = 246

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L++V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  RI + 
Sbjct: 105 LFLENVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRI-DT 163

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D ++   S     +   LSS S    E  +  +   L++G EG+G+ P+    A  + H
Sbjct: 164 ADFIRLARSSSLPILASTLSSTSIDYREV-VSKESFVLVMGNEGQGISPEMTVAADILVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243


>gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 280

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   + ++ T      Y+P       +++ G+L H+P
Sbjct: 117 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 172

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 + +A+  +   G + +      +  L+ E+    +    A + G E  GL  +T
Sbjct: 173 VAVGVPVEEAVAGLRDAGVRILAADGAGEDDLDAELDKGTMGGPTAWVFGNEAWGLPEET 232

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +E A ++  + + G  ++LN++ AAAV LY
Sbjct: 233 RELADAVVRVPIHGKAESLNLATAAAVCLY 262


>gi|284009258|emb|CBA76372.1| tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
          Length = 331

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           GL  E     S  +D V      + ++ + +PHN+GAI+RS   F   GII     +  E
Sbjct: 168 GLDAEAYLAQSNKIDCV------LAVEDIGNPHNLGAIMRSCAHFGVQGIILHD-TAAME 220

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIA 230
           S    ++A+G  E+I  I+  N    L K    G+  I  +S+ K  ++  + +  +KI 
Sbjct: 221 SGSAVRTAAGGAEYIKGIQSDNFATTLNKFRHAGY-IIVTTSNHKDNIDIAKAVLPEKIV 279

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L+L  E  GL     +       +   G +K+LNVS AA + L
Sbjct: 280 LLLEQESDGLTASLCQKGDMSLSIGGTGQVKSLNVSVAAGIIL 322


>gi|294777466|ref|ZP_06742917.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294448534|gb|EFG17083.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 178

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA   + +    
Sbjct: 25  LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYKK 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  DA+Q++H  GF  + +       L  +++ D   K A+++G E KG++ +       
Sbjct: 85  NTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS    + L+   N   K
Sbjct: 145 CVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176


>gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF]
          Length = 296

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L+ VL HV DP N G +LR A A   D +I T       +    +++ G+L H+P 
Sbjct: 137 RRPRLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHLPV 196

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245
           +    + +A+  +   G + +         L+ E+    +    A + G E  GL  +T+
Sbjct: 197 VTGVPVEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTMGGPSAWVFGNEAWGLPEETR 256

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A ++  + + G  ++LN++ AAAV LY
Sbjct: 257 ALADAVVRVPLHGKAESLNLATAAAVCLY 285


>gi|145230059|ref|XP_001389338.1| RNA methyltransferase, TrmH family [Aspergillus niger CBS 513.88]
 gi|134055453|emb|CAK43968.1| unnamed protein product [Aspergillus niger]
          Length = 497

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 120/302 (39%), Gaps = 74/302 (24%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLL----------ATKNALARL------------ 81
           + P + F+YG+    AAL    R+I++L             K AL +L            
Sbjct: 179 TTPASQFVYGISACMAALRCSRRRIYKLYIYQSEGRELSPEKKALRKLALLKNVTVKMAF 238

Query: 82  -DWDANL-------PHPF------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             W   L       PH        P+  +P Q    +   EA + GL L         ++
Sbjct: 239 ASWGRLLDQMSDGRPHQGCILEVSPLPRLPVQNFRPVPSPEADNFGLELGAQSREEAQVN 298

Query: 128 AVRNS-----------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
              N+            ++++LD + DP N+GAI+RSA     D I+   R S   S V+
Sbjct: 299 TTNNTVDINNTFGKRYPVVILLDGIVDPGNLGAIIRSAYYLGADAIVFAGRNSAEISPVV 358

Query: 177 AKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTI-----GLSSDSKKPLE----QEIK 225
            K+++GA E +  + + N  D ++  K + W F        G +S    P E      + 
Sbjct: 359 LKASAGAAELMTLLHVRNEVDFIRRSKDNGWRFYAADAPGKGSTSTYIDPAEFGNGAPVA 418

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--------------IKALNVSNAAAV 271
                +++G+EG GL P     A ++  + +PG               + +LNVS AAA+
Sbjct: 419 QAPSVIMMGSEGTGLSPHILSQADAV--IGIPGAKFSPELGAESDPARVDSLNVSVAAAL 476

Query: 272 AL 273
            +
Sbjct: 477 LM 478


>gi|268319892|ref|YP_003293548.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|262398267|emb|CAX67281.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
          Length = 253

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 118/266 (44%), Gaps = 30/266 (11%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL N    ++ +L T  AL +LD   
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-VLGTAEALKKLDASY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVG-KEAVHQGLA--------LETAPLLSPTLDAVRNSQLLM 136
            L              DK++   +A+ Q L+            P+  P   +    + + 
Sbjct: 66  KLKD------------DKVIQITDAISQHLSSTKNSQDIFMVLPINQPKSFSFEYGKWV- 112

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD++ DP N+G I+R+A A   DG++ ++      +  + +S  G+  HI  I+ + + 
Sbjct: 113 VLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQ-NPIL 171

Query: 197 DALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +A+      G    + +   + K L       ++AL++G E  G   +  ETA    ++ 
Sbjct: 172 EAISSFKENGLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIP 231

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           + G  ++LN + AA + +Y    HF+
Sbjct: 232 IKGKAESLNAAVAAGIMIY----HFS 253


>gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 283

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   D +I T      Y+P       +++ G+  H+P
Sbjct: 122 KLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSHFHLP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+Q +   G + +      ++ L+ E+    +    A I G E  GL  +T
Sbjct: 178 VAVGVPVEQAVQGLRDAGVRVLAADGAGEQDLDDELDAGTMGGPTAWIFGNEAWGLPEET 237

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  A ++  + + G  ++LN++ AAAV LY +
Sbjct: 238 RALADAVVRVPIHGKAESLNLATAAAVCLYAS 269


>gi|166713190|ref|ZP_02244397.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 303

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 64/138 (46%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GA+LRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 155 LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 214

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               A+ ++   GF       D  + +       ++  ++GAE +G+             
Sbjct: 215 GTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 274

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 275 IRGSGKVESLNVASATAV 292


>gi|289665109|ref|ZP_06486690.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 197

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GA+LRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 46  LALWLDGVGNPHNFGAMLRSSAHFGVAGLLLPAASTLGLSGAAARVAEGGAEAVPLVQLP 105

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF       D  + +       ++  ++GAE +G+             
Sbjct: 106 DTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 165

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 166 IRGSGKVESLNVASATAV 183


>gi|322411169|gb|EFY02077.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 245

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 75/143 (52%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--IS 193
           ++L+ V DP N+G I+R+A A   DG+  +++ +   ++   +S  G+  H+   R  I 
Sbjct: 104 LILEDVQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLSIWRTDIY 163

Query: 194 NLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +   +Q+ ++    T    +S D K    QE      AL++G EG+G+  +    A  +
Sbjct: 164 KICREMQEHNTPVLATTLSKVSVDYKTVPHQE----SFALVMGNEGQGISAEMTALADQL 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ MPG  ++LNV+ AA + ++
Sbjct: 220 VHITMPGQAESLNVAVAAGILIF 242


>gi|300932625|ref|ZP_07147881.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 304

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 21/162 (12%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI--- 187
            ++++ VL+ V D  NIGA+ R+A     D ++     + +   +  +S   ++ H+   
Sbjct: 142 GAKVVAVLEGVGDHENIGAMFRNAAGLGVDAVLFG---AATADPLYRRSVRVSMGHVLRT 198

Query: 188 PYIRISNLTD----ALQKMHSWGFQTIGLSSDSKKPL-----------EQEIKNDKIALI 232
           P+ R+   T     +L+++   G+  I L+ ++++ L           E E +  +IA++
Sbjct: 199 PFARLEGKTTTWQRSLEQLRRRGYTVIALTPNTEETLMSAVALAQRRAEAEQRESRIAIM 258

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +GAEG GL       A   A + M     +LNV+ AAA+  Y
Sbjct: 259 VGAEGPGLTEHAMRAADIRAAIPMASGTDSLNVATAAAIGFY 300


>gi|15603722|ref|NP_246796.1| hypothetical protein PM1857 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722284|gb|AAK03941.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 359

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 66/118 (55%), Gaps = 2/118 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSA 180
           L+  LD  R    L+++D V +PHN+G ++R+   F   G++  +  + + +A  A + A
Sbjct: 202 LAGYLDIPRKQDCLVLIDGVQNPHNLGGVVRTCAVFGVKGVVIEQALADNLNAPAAMRVA 261

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEG 237
            G +E++  +  +++  AL ++   G+Q I ++++ + KPL +    +K+  +L  +G
Sbjct: 262 EGGMEYVRVLETTDVPKALAQLRQAGYQLIHVTANKQAKPLSKLHFTEKVVFVLNEQG 319


>gi|291085009|ref|ZP_06570899.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291071645|gb|EFE09754.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 246

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 5/148 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ + +PHN+G ++RS   F   G++  +  +  ES    ++A G  EH+  I   
Sbjct: 99  CVLALEDIANPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGD 157

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252
           ++ D L      G+  +  SS   KPL      +K+ L+LG E + L P+   +A  +  
Sbjct: 158 SIVDVLDDFRHAGYTVVMTSSVKGKPLFTTTLPEKMVLVLGREREAL-PEAACSADDLCV 216

Query: 253 HLHMPGIIKALNVSNAAAVAL--YITQN 278
            +   G ++ LNVS A  V L  +  QN
Sbjct: 217 AIDGTGNVETLNVSVATGVLLAEWWRQN 244


>gi|320093952|ref|ZP_08025781.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979110|gb|EFW10624.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 287

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 5/153 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +    +++    DP N+G I+R+A A     ++T    +   S  + ++++G++ H+P I
Sbjct: 108 DGGFYVIIAQGRDPGNVGTIIRTADAMGARAVLTVAGTADVTSPKVVRASAGSVFHLPVI 167

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK-PL----EQEIKNDKIALILGAEGKGLRPKTQ 245
                  A+  +H+ G + +G S   +  PL    E+       A  LG E +GL     
Sbjct: 168 PHPAFGAAVDALHARGARVLGTSGGPRAVPLPAVEEEGALAGPHAWALGNEARGLDADEV 227

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                +  + M G+ ++LNV++AAAV LY +Q 
Sbjct: 228 AACDLLVAIPMTGLAESLNVASAAAVCLYASQR 260


>gi|238759744|ref|ZP_04620903.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
           ATCC 35236]
 gi|238702070|gb|EEP94628.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
           ATCC 35236]
          Length = 296

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 147 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAILESGAAVRTAEGGAEHIKAIN 203

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 204 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDVS 263

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 264 VSIGGTGKVESLNVSVATGILLAEWWRQN 292


>gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus epidermidis FRI909]
          Length = 246

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           PT D  +  Q+L++ D + DP N+G ++R+A A   D I+  K  +      + +++ G+
Sbjct: 97  PTYDKTQAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + HIP I      D    +H +     G + ++             AL+LG EG+G+ P 
Sbjct: 156 IFHIPVI----FDDINNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPD 211

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  T    + + G  ++LNV+ A ++ +Y
Sbjct: 212 LLKETTQNLTIPIYGKAESLNVAIAGSILMY 242


>gi|154315816|ref|XP_001557230.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10]
 gi|150846876|gb|EDN22069.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10]
          Length = 586

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 126/306 (41%), Gaps = 85/306 (27%)

Query: 46  PENLFLYGVHTVSAALN---NPSRKIFQLLATKN----------ALARL----------- 81
           P + FLYG   V AALN     SRK+++L   K           A+A+L           
Sbjct: 252 PASEFLYGTSVVEAALNARRKRSRKLYKLYILKGEDRQNGERDGAIAKLAQKKGVEVAIV 311

Query: 82  ---DWDANL-------PHPF------PVKTVPPQTIDKIVGKEAVHQGLALETAP----- 120
              DW   L       PH        P+  +P  ++  I+ ++      A++  P     
Sbjct: 312 RGHDWLRTLDKMSQGRPHNGYILEVSPLPRLPLMSLGSIIDQD---DSFAIKLTPDHQSR 368

Query: 121 ----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                     ++    D+     L+++LD + DP N+GAILR+A+      +  + R S 
Sbjct: 369 EEIEVNGNDTIIKVAKDSTGRKPLILLLDSIEDPQNLGAILRTALFMGVTAVAISTRNSA 428

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-------SSDSK---KPL 220
           S + V+ K+++GA E+I    ++     +    + G++            +DS+    P 
Sbjct: 429 SFTPVVFKASAGAAENIEIFSVNKPGGFVTGSQAAGWKIYAAVAPPAPRKADSRHMWPPT 488

Query: 221 EQE----------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----IKALNV 265
            QE          +++D   L++G EG+GLR   ++ A    HL + G      + +LNV
Sbjct: 489 SQEFVWTHDLQDPLRDDPCILMVGGEGEGLRKALRDHAD--VHLSIKGAGNRGRLDSLNV 546

Query: 266 SNAAAV 271
           S A  +
Sbjct: 547 SVATGM 552


>gi|116511397|ref|YP_808613.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107051|gb|ABJ72191.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 252

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 115/256 (44%), Gaps = 21/256 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---- 83
           +D KK++   +      +  +  + G H +  AL      I Q+   +N LA+L      
Sbjct: 7   KDNKKVKEARKLLTKKYRKNSYLIEGFHLLEEALK-AGHSIKQIFVEENKLAKLTAMIGS 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           + +L     V  V    +  +   E+  QGL  E A +    +D   +  LL  L++V D
Sbjct: 66  EKSLT-DLSVNLVSKDVLKSLADSES-PQGLIAEVAKI-EEVIDFSASKFLL--LENVQD 120

Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNL-TDA 198
           P N+G ++R+A A     +I    T   YSP     + +S  G+  H+   R++     A
Sbjct: 121 PGNVGTMIRTADAAGFSAVILLGETADLYSPK----VMRSMQGSNFHLAIARMNEEECFA 176

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             K       T  LS++S     + ++    AL++G EG G+     E+A  + H+ MPG
Sbjct: 177 ALKQAKISILTTTLSANSVSY--KTVEESSFALVMGNEGAGVSDFAVESADKLVHIDMPG 234

Query: 259 IIKALNVSNAAAVALY 274
             ++LNV+ AA + ++
Sbjct: 235 QAESLNVAVAAGILIF 250


>gi|119499892|ref|XP_001266703.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
           NRRL 181]
 gi|119414868|gb|EAW24806.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
           NRRL 181]
          Length = 484

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 136/340 (40%), Gaps = 96/340 (28%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENL--------FLYGVHTVSAALNNPSRKIFQLL 72
           ++L+R  + + + +   QK +H   P+++        F+YG   V AAL +  R++++L 
Sbjct: 133 SRLKRGEKRFTEGEP-EQKKKHVLVPDSVPYTTPASEFIYGTSAVEAALRSGRRQLYKLY 191

Query: 73  ----------ATKNALARL-------------DWD-------ANLPH--------PFPVK 94
                      T++ L +L              WD       +  PH        P P  
Sbjct: 192 IYQGDNEELGPTRSMLRKLALSKNIKVKMAYAGWDRLFDQMSSGRPHNGCILDASPLPQL 251

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------------QLLMVLDHVN 142
            V        +G +     LA ++      T+++  N              ++++LD + 
Sbjct: 252 PVKSLCATPTLGADEFRVVLAPQSKE--EATVNSTNNRIPVRHLPGKSRYPVVLLLDGIT 309

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-- 200
           D  N+G I+RSA     D I+   R     S +  K+++GA E++P I++SN  D +Q  
Sbjct: 310 DTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITIKASAGAAENMPLIKVSNEVDFIQQS 369

Query: 201 KMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRPKTQET 247
           K + W F     ++D+  P                 +      ++LG+EG GL    +  
Sbjct: 370 KANGWHF----FAADAPLPGSRYPDTTGDIDLTRNAVTQAPSVIMLGSEGSGLSGHIKSH 425

Query: 248 ATSMAHLHMPGI--------------IKALNVSNAAAVAL 273
           A S+  + +PG               + +LNVS AAA+ +
Sbjct: 426 ADSI--VSIPGARNATEWGYEKDSARVDSLNVSVAAAILM 463


>gi|238795639|ref|ZP_04639154.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           mollaretii ATCC 43969]
 gi|238720758|gb|EEQ12559.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           mollaretii ATCC 43969]
          Length = 358

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 210 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAILESGAAVRTAEGGAEHIKAIN 266

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 267 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMS 326

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 327 VSIGGTGRVESLNVSVATGILLAEWWRQN 355


>gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78]
 gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78]
          Length = 297

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 12/153 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALE 185
           R  +L+ VL HV DP N G +LR A A   D +I T      Y+P       +++ G+L 
Sbjct: 138 RRPRLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPK----CVRASVGSLF 193

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLR 241
           H+P +    + +A+  +   G + +         L+ E+    +    A + G E  GL 
Sbjct: 194 HLPVVTGVPVEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLP 253

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 254 EETRALADAVVRVPLHGKAESLNLATAAAVCLY 286


>gi|116333650|ref|YP_795177.1| rRNA methylase [Lactobacillus brevis ATCC 367]
 gi|116098997|gb|ABJ64146.1| rRNA methylase [Lactobacillus brevis ATCC 367]
          Length = 256

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 19/198 (9%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHVNDP 144
           +LP   P+  +   ++ K +G     QG+   TAP+   T +D    +   + LD+V DP
Sbjct: 65  SLPTDVPIYELT-DSLAKTIGDTGTPQGI-FATAPMPDETAIDPKTATGAWLFLDYVQDP 122

Query: 145 HNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
            NIG ++R+A A    G++    T  R+ P     + ++  G+  HI  +  ++L D + 
Sbjct: 123 GNIGTMVRTADAAGLTGVVFGKGTASRFLPK----VLRAMQGSQFHIQLVE-ADLHDWIG 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHM 256
              +      G + D   P  Q+ ++       A+++G EG G+ P  Q   T   ++ +
Sbjct: 178 AFTARQLPVYGTNLD---PQAQDYRDVPALTNGAIVMGNEGNGMAPDLQRLTTQNLYIPI 234

Query: 257 PGIIKALNVSNAAAVALY 274
            G  ++LNV+ AA V ++
Sbjct: 235 KGQAESLNVAVAAGVVMF 252


>gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
 gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
          Length = 256

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 39/285 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+EKI  L     AK R+    Y                    L G H V  A
Sbjct: 1   MESISSPKNEKIKELVKLQTAKGRKKAGMY-------------------LLEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   ++ I  ++ T N   RL+   NL     V+ +       +V ++  H+    ETA 
Sbjct: 42  IKERAQ-IKLIVVTSN---RLEDYKNLLAQTDVQVL-------VVSQDVFHKLSMTETAQ 90

Query: 121 LLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            +   ++ V+   L      +VLD V DP N+G I+R+A A   D ++         +  
Sbjct: 91  GILAVVEIVKQEILPHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDK 150

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALIL 233
           + +S  G+  HIP  + +NL + L  +   G Q     L  DSK     +   D +A+++
Sbjct: 151 VLRSMQGSHFHIPVFQ-ANLQEYLPILKEKGVQVAVTALHRDSKDYSVLQGATD-VAIVV 208

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G EG+G+     + A  +  + + G  ++LNVS A+A+ +Y T+ 
Sbjct: 209 GNEGQGVSDDVIDLADVVVTIPIFGKAESLNVSIASALLMYKTKE 253


>gi|256820057|ref|YP_003141336.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256581640|gb|ACU92775.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 267

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 9/154 (5%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSA 180
           TL  V +S LL+V +    P NIGA+LR+A A + D +I     T  Y+P+    + +S+
Sbjct: 109 TLAFVTDSPLLLVAEAPEKPGNIGALLRTADAANIDAVIIANPKTDLYNPN----IIRSS 164

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G +  +P I   + T+ +  + + G  +   +  + KP  +    +  A+++G E +GL
Sbjct: 165 VGCVFTVP-IATGSTTEVIDFLKAKGINSYCAALTAFKPYYEVSFEEASAIVVGTEDQGL 223

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +    +T    + M G+I ++NVS AAAV ++
Sbjct: 224 TEEWLTHSTQNIIIPMEGVIDSMNVSVAAAVLIF 257


>gi|153807708|ref|ZP_01960376.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
 gi|149129317|gb|EDM20531.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
          Length = 268

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  R ++ ++V+D V D  NIGAI RSA A   D ++ T+      +  + + + GA+  
Sbjct: 114 EVCREARRIVVIDSVVDATNIGAIFRSAAALGIDAVLLTRNSCDPLNRRVVRVSMGAVFF 173

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPK 243
           +P+   + +  +L  +   GF+T  ++ +D   P++    +   K+A+++G EG+GL   
Sbjct: 174 VPW---AWMNGSLSDLGKLGFRTAAMALTDDSIPIDNPALVNESKLAIVMGNEGEGLSHD 230

Query: 244 TQETATSMAHLHMPGIIKALN 264
           T   A  +  + M   + +LN
Sbjct: 231 TITEADYVVRIPMVHGVDSLN 251


>gi|87302985|ref|ZP_01085789.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
 gi|87282481|gb|EAQ74440.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
          Length = 290

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P   A      ++ LD + DP N+G ++R+A+A   + +  ++   P +  VL  SA  A
Sbjct: 122 PEPPACERVDFVLALDRLQDPGNLGTLMRTALAAGVEELWHSEGADPFQPKVLRASAGAA 181

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L  +P  R+  L   L+   + G Q +        P  Q        L+LG EG GL P+
Sbjct: 182 LA-LPCRRLEQLLPRLESARTGGVQVVASVVAGGIPYWQLDWTLPTVLLLGNEGAGLAPE 240

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAA 270
               ++    +   G +++LNV+ AAA
Sbjct: 241 LLAASSHQVTIPHSGAVESLNVAVAAA 267


>gi|238793926|ref|ZP_04637545.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           intermedia ATCC 29909]
 gi|238726693|gb|EEQ18228.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           intermedia ATCC 29909]
          Length = 364

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 216 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 272

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 273 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMS 332

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 333 VSIGGTGRVESLNVSVATGILLAEWWRQN 361


>gi|120603957|ref|YP_968357.1| RNA methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120564186|gb|ABM29930.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           DP4]
          Length = 274

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD V DP N G + RS  A    G+I  +  +    A   ++A+GALE +P  R++
Sbjct: 123 LIIALDQVQDPGNAGTLARSLYALGGAGLIVPRHNAAYLGAGAHRAAAGALEKLPVARVA 182

Query: 194 NLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           NL  AL +    G+   G      S       ++   + L+LG E KG+RP   +   ++
Sbjct: 183 NLARALDEAAEAGYAIYGAMCGEGSVNAFTATLRTPCV-LVLGNEDKGIRPNVAKRCDTL 241

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
            H+ M     + NV+ A A+ L
Sbjct: 242 LHIPMLRDFDSFNVAQAGALLL 263


>gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 248

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 21/181 (11%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           TV PQ I  I+ K            P +S  ++  +    +++LD + DP N+G ++R+A
Sbjct: 84  TVTPQGIFAIIEK------------PDVSKQVEVAKQ---VLLLDRIQDPGNLGTLIRTA 128

Query: 155 VAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
            A + D I+ +     P +  VL +++ G++ H+P I      D  + +  +     G +
Sbjct: 129 DAAALDLIVMSPGSADPFQDKVL-RASQGSVFHLPIIS----QDIKEFVQDFDGPVYGTA 183

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D+     +    +K  L+LG EG+G+ P+  E  T    + M G  ++LNV+ A ++ +
Sbjct: 184 LDNAINFNEVESQEKFGLLLGNEGQGVDPELLEYTTQRLTIPMYGEAESLNVAIAGSILI 243

Query: 274 Y 274
           Y
Sbjct: 244 Y 244


>gi|312135023|ref|YP_004002361.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
           OL]
 gi|311775074|gb|ADQ04561.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
           OL]
          Length = 270

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/280 (20%), Positives = 118/280 (42%), Gaps = 26/280 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  IS +++E I  +K  H  K R   R +                    + G+  V  A
Sbjct: 6   VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46

Query: 61  LNNPSRKIFQLLATKNALARLD---WDA-NLPHPFPVKTV--PPQTIDKIVGKEAVHQGL 114
           ++     I  ++ ++ A  R     W+   L     +K V   P  + + +   +  QG+
Sbjct: 47  IDYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGI 106

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            L     +   ++ ++N + ++V D + DP N+G ++R A AF  D ++TTK      + 
Sbjct: 107 -LAECNFVDKDINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              ++  G+L H+  +R +     ++ +    F     +      + + + + K  +++G
Sbjct: 166 KTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIG 225

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E +G+     + A     + M G  ++LN + AA+V LY
Sbjct: 226 NESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASVVLY 265


>gi|70993278|ref|XP_751486.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           Af293]
 gi|66849120|gb|EAL89448.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           Af293]
 gi|159125580|gb|EDP50697.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           A1163]
          Length = 484

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++LD + D  N+G I+RSA     D I+   R     S +  K+++GA E++P I++S
Sbjct: 301 VVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITIKASAGAAENMPLIKVS 360

Query: 194 NLTDALQ--KMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGK 238
           N  D +Q  K + W F     ++D+  P                 +      ++LG+EG 
Sbjct: 361 NEVDFIQQSKANGWRF----FAADAPLPGTRYPDTTGDIDLTRNAVTQAPSVIMLGSEGS 416

Query: 239 GLRPKTQ------------ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           GL    +              AT   +   P  + +LNVS AAA+ +
Sbjct: 417 GLSGHIKSHADSIVSIPGARNATEWGYEKDPARVDSLNVSVAAAILM 463


>gi|108808751|ref|YP_652667.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|108810992|ref|YP_646759.1| putative methyltransferase [Yersinia pestis Nepal516]
 gi|145600164|ref|YP_001164240.1| putative methyltransferase [Yersinia pestis Pestoides F]
 gi|149364890|ref|ZP_01886925.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
 gi|165926567|ref|ZP_02222399.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936079|ref|ZP_02224649.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010984|ref|ZP_02231882.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213137|ref|ZP_02239172.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399004|ref|ZP_02304528.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421660|ref|ZP_02313413.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423225|ref|ZP_02314978.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469723|ref|ZP_02334427.1| predicted methyltransferase [Yersinia pestis FV-1]
 gi|170025557|ref|YP_001722062.1| putative methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|186894222|ref|YP_001871334.1| putative methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|218930294|ref|YP_002348169.1| putative methyltransferase [Yersinia pestis CO92]
 gi|229013132|ref|NP_668251.2| putative methyltransferase [Yersinia pestis KIM 10]
 gi|229220784|ref|NP_992052.2| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|229838881|ref|ZP_04459040.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896374|ref|ZP_04511543.1| predicted methyltransferase [Yersinia pestis Pestoides A]
 gi|229899450|ref|ZP_04514593.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901210|ref|ZP_04516332.1| predicted methyltransferase [Yersinia pestis Nepal516]
 gi|270489397|ref|ZP_06206471.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Yersinia pestis KIM D27]
 gi|294504983|ref|YP_003569045.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
 gi|108774640|gb|ABG17159.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516]
 gi|108780664|gb|ABG14722.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua]
 gi|115348905|emb|CAL21862.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92]
 gi|145211860|gb|ABP41267.1| tRNA/rRNA methyltransferase [Yersinia pestis Pestoides F]
 gi|149291303|gb|EDM41377.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
 gi|165916224|gb|EDR34831.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921495|gb|EDR38692.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989984|gb|EDR42285.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205924|gb|EDR50404.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960579|gb|EDR56600.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051508|gb|EDR62916.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057395|gb|EDR67141.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752091|gb|ACA69609.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           YPIII]
 gi|186697248|gb|ACC87877.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681139|gb|EEO77233.1| predicted methyltransferase [Yersinia pestis Nepal516]
 gi|229687852|gb|EEO79925.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695247|gb|EEO85294.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700650|gb|EEO88680.1| predicted methyltransferase [Yersinia pestis Pestoides A]
 gi|262363048|gb|ACY59769.1| putative tRNA/rRNA methyltransferase [Yersinia pestis D106004]
 gi|270337901|gb|EFA48678.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Yersinia pestis KIM D27]
 gi|294355442|gb|ADE65783.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
 gi|320016459|gb|ADW00031.1| putative methyltransferase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 388

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 239 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 295

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 296 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 355

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 356 VSIGGTGRVESLNVSVATGILLAEWWRQN 384


>gi|291549718|emb|CBL25980.1| rRNA methylases [Ruminococcus torques L2-14]
          Length = 285

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L+ V +P N+GAI RSA A   D ++ T   S       ++ + G +  IP+  I +
Sbjct: 127 IAILEDVMNPTNVGAIFRSAAAMHIDTVLLTSGCSNPLYRRASRVSMGTVFQIPWTFIQD 186

Query: 195 LTD------------ALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKG 239
             +            A++ + + G++T  L+ +D    ++  Q +  +K+A+ILG EG G
Sbjct: 187 DKERRCDRKDIWPVQAIENLKALGYKTAALALTDDSVSIDDPQLMSEEKLAVILGTEGDG 246

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L  +T +       + M   + +LNV+ A+AVA +
Sbjct: 247 LMQETIKACDYTVKIPMSHGVDSLNVAAASAVAFW 281


>gi|238752954|ref|ZP_04614415.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
           ATCC 43380]
 gi|238708815|gb|EEQ01072.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
           ATCC 43380]
          Length = 371

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 223 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAILESGAAVRTAEGGAEHIKAIN 279

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 280 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMS 339

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 340 VSIGGTGRVESLNVSVATGILLAEWWRQN 368


>gi|21957656|gb|AAM84502.1|AE013695_4 hypothetical protein y0920 [Yersinia pestis KIM 10]
 gi|45435370|gb|AAS60929.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 393

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 244 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 300

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 301 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 360

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 361 VSIGGTGRVESLNVSVATGILLAEWWRQN 389


>gi|291520861|emb|CBK79154.1| rRNA methylases [Coprococcus catus GD/7]
          Length = 260

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 125 TLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +LDA+  +   LL+ L+++ DP N+G ++R+A      GII ++  +   +    ++  G
Sbjct: 99  SLDAIMKQPDALLLFLENIQDPGNLGTMMRTAEGAGVTGIIMSRETTDIYNPKTIRATMG 158

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +L  +P++ + +  + ++   + G +        K   + E        ++G EG GL  
Sbjct: 159 SLYRMPFVYVDDFCETIRMAKAQGIRLYAAHLKGKHTYDGEDYRQPSGFLIGNEGNGLTQ 218

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  ++AT    + M G +++LN + AAAV +Y
Sbjct: 219 EAADSATDYIRIPMGGQLESLNAAVAAAVLMY 250


>gi|283458458|ref|YP_003363084.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134499|dbj|BAI65264.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 344

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 77/177 (43%), Gaps = 35/177 (19%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASG 182
           D   N +L+ VL  V DP N G ILR A A   D +ITTK     Y+P       +S +G
Sbjct: 163 DGALNPKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKT----VRSTAG 218

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIA----------- 230
           +L H+P I+   L D  + + S G  T  L++D    +  QE+     A           
Sbjct: 219 SLFHVPIIQGVQLEDFAEDVKSQG--TAVLAADGYGAVNLQELSEYTAARRAGVEASAPS 276

Query: 231 -------------LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                         + G E +GL  + +  AT    + + G  ++LNV  AAAV LY
Sbjct: 277 GVKGNFDLSKPTMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLY 333


>gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 175

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 79/156 (50%), Gaps = 6/156 (3%)

Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++D  ++++   L+++LD+V   +NIG++ R++ AF  + +      +   +A + K+A 
Sbjct: 13  SIDEFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTAL 72

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGK 238
           GA   + ++   +  DAL+ +   GF    +    +  +  E+  DK    A++LG E K
Sbjct: 73  GAENSVDWVYYEDTRDALRGLKDRGFTICAIEQAERSIMLDELVVDKAKGYAVVLGNEVK 132

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+R +  +       +   G   +LNVS AA + ++
Sbjct: 133 GVRQEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIW 168


>gi|238784486|ref|ZP_04628495.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           bercovieri ATCC 43970]
 gi|238714655|gb|EEQ06658.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           bercovieri ATCC 43970]
          Length = 363

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 215 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 271

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 272 ADDFLSVLDTFRKAGYTIVTTSSHKGVTLSKAELPAKMVLVLGQESDGLTDSAWQQGDMS 331

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 332 VSIGGTGRVESLNVSVATGILLAEWWRQN 360


>gi|153950911|ref|YP_001402163.1| methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|152962406|gb|ABS49867.1| RNA methyltransferase, TrmH family [Yersinia pseudotuberculosis IP
           31758]
          Length = 395

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 246 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 302

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 303 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 362

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 363 VSIGGTGRVESLNVSVATGILLAEWWRQN 391


>gi|327540299|gb|EGF26885.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopirellula baltica WH47]
          Length = 275

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 11/149 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALEH 186
           N  L++VLD V  P N+GA+ RSA A     ++ +     R++P+      + + GA+  
Sbjct: 124 NDGLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNA----IRGSLGAVFT 179

Query: 187 IPYIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P    S +  +A  K H  G++   +  +  +PL       K+A++LG+E  GL  +  
Sbjct: 180 VPSASGSESQMEAFLKTH--GYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWA 237

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     L M G + +LNVS +AA+  +
Sbjct: 238 GDSIDPVALPMAGHVDSLNVSVSAAIVAF 266


>gi|331265656|ref|YP_004325286.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
 gi|326682328|emb|CBY99945.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
          Length = 246

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 14/147 (9%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-- 192
            + L+ V DP N+G ++R+A A    G+I + + +   S    +S  G+  H+P  R+  
Sbjct: 104 FLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRLPL 163

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSK-----KPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           ++  +  +K +     T  LS +SK      PLE        AL++G EG+G+     E+
Sbjct: 164 ASFVEEAKKSYLPILATT-LSRESKDYRELSPLE------NFALVMGNEGQGISSVMAES 216

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A  + H+ M G  ++LNV+ AA + ++
Sbjct: 217 ADQLVHISMKGRAESLNVAVAAGILMF 243


>gi|46447870|gb|AAS94526.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 249

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD V DP N G + RS  A    G+I  +  +    A   ++A+GALE +P  R++
Sbjct: 98  LIIALDQVQDPGNAGTLARSLYALGGAGLIVPRHNAAYLGAGAHRAAAGALEKLPVARVA 157

Query: 194 NLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           NL  AL +    G+   G      S       ++   + L+LG E KG+RP   +   ++
Sbjct: 158 NLARALDEAAEAGYAIYGAMCGEGSVNAFTATLRTPCV-LVLGNEDKGIRPNVAKRCDTL 216

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
            H+ M     + NV+ A A+ L
Sbjct: 217 LHIPMLRDFDSFNVAQAGALLL 238


>gi|120404299|ref|YP_954128.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119957117|gb|ABM14122.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 248

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 68/144 (47%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N +L+ V   +++P N G ++R A A   D ++         +    ++++G++  IP +
Sbjct: 96  NPKLVAVPVGISEPGNAGTLIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVL 155

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +   A+ K+   G Q +    D    LE    +   A + G E  GL       AT+
Sbjct: 156 SAPDAVAAVTKLKDAGLQVLATVLDGPVSLEDADLSVPTAWLFGPEAHGLPADVAGLATA 215

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + MPG  ++LNV++AAA+ LY
Sbjct: 216 GVRIPMPGNAESLNVASAAAICLY 239


>gi|306835998|ref|ZP_07468990.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304568164|gb|EFM43737.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 268

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 1/133 (0%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++P N G ++R++ A   DG+I          + +A++++G+L H+P  R  N+ D L +
Sbjct: 128 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQ 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G Q +  ++D +  L         A + G E  GL    +E A     + + G  +
Sbjct: 188 LRKSGMQIVATAADGEVELADADLTQPTAWLFGNEAHGLGELLEE-ADMRVRIPLRGRAE 246

Query: 262 ALNVSNAAAVALY 274
           +LN++ AA++ LY
Sbjct: 247 SLNLATAASICLY 259


>gi|260435545|ref|ZP_05789515.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
 gi|260413419|gb|EEX06715.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
          Length = 210

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R + L ++L+HV  PHN+ AILRS     CD +   + ++ S +        +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILRS-----CDAVGALEAHAVSFNGRPRTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P     +   A++ + + GF+  G  L  D+K   E +      A +LGAE  GL  + 
Sbjct: 73  VPLHDHPDTETAIRHLKAKGFRLYGTHLGVDAKDYRECDFTG-PTAFVLGAEKWGLTDQA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q+       + M G++++LNVS A A  L+
Sbjct: 132 QDLMDEALFIPMRGMVQSLNVSVATATLLF 161


>gi|163784271|ref|ZP_02179188.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880460|gb|EDP74047.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 131

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 1/118 (0%)

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G++  +  S   + V+ K ++GA+ H+P  ++S+L D+L+K    G   + +    
Sbjct: 1   MGASGVVVPRERSAPINEVVVKGSAGAVFHLPIAKVSSLRDSLEKFQKLGGWILAIEKGG 60

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K P+ +      +AL+LG+EGKG      + A  +A + M G I +LNV++A A+ ++
Sbjct: 61  K-PIHKLKFPFPLALVLGSEGKGTSKSILKLADIIATIPMKGKITSLNVASAGAIGMW 117


>gi|312622555|ref|YP_004024168.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203022|gb|ADQ46349.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 270

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---- 167
           QG+  E    +   ++ ++N + +++ D++ DP N+G ++R A AF  D ++TTK     
Sbjct: 104 QGILAECI-FVDKDINFIKNLRRVVIADNLQDPGNLGTLIRCADAFGFDAVVTTKGTVDI 162

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
           Y+P  +    ++  G+L H+  +R +     ++ +    F     +      + + + + 
Sbjct: 163 YNPKTT----RATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDK 218

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +++G E +G+     + AT    + M G  ++LN + AA++ LY
Sbjct: 219 RFCIVIGNESEGVSDSFAKVATRKIKIPMVGKTESLNAAVAASIVLY 265


>gi|330997272|ref|ZP_08321125.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
 gi|329571067|gb|EGG52774.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
          Length = 180

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLDHV   +N+G++ RS+ AF  + +      +      + K+A GA + + ++   
Sbjct: 29  LIVVLDHVRSLYNVGSVFRSSDAFRVESVYLCGITATPPQVEIHKTALGAEDSVDWVYYE 88

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
              DA++ + + G++   +       + Q+ + D   K A+ILG E KG++ +  +    
Sbjct: 89  RTQDAVEHLKAEGYEVWAVEQVEGSVMLQDFRPDKAKKYAIILGNEVKGVQQEVVDQCDG 148

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 149 CIEIPQFGTKHSLNVSVTAGILVW 172


>gi|307720229|ref|YP_003891369.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306978322|gb|ADN08357.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 250

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 2/142 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ LD + +P N+G I+RS  A + DGII  K+ S   S ++ K+++G L  +P    + 
Sbjct: 110 LIALDGIQNPQNLGMIIRSCAAGNIDGIILPKKNSAKISPLVVKASAGTLFKLPIYFCNT 169

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + L +       T  LSS +K  +    +++K   +LG E +G+  +  +   +   +
Sbjct: 170 LQEVLTEQQEAKIYT--LSSYAKTTIYDIQESEKTIYVLGNENEGVSHEVAKLCNNSVSI 227

Query: 255 HMPGIIKALNVSNAAAVALYIT 276
            M   +++LNV+  A++  ++T
Sbjct: 228 PMNRGVESLNVAVTASLIAFMT 249


>gi|238787892|ref|ZP_04631688.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           frederiksenii ATCC 33641]
 gi|238723840|gb|EEQ15484.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           frederiksenii ATCC 33641]
          Length = 363

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 215 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 271

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 272 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMS 331

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 332 VSIGGTGRVESLNVSVATGILLSEWWRQN 360


>gi|227501820|ref|ZP_03931869.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227077845|gb|EEI15808.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 268

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ++P N G ++R++ A   DG+I          + +A++++G+L H+P  R  N+ D L +
Sbjct: 128 SEPGNAGTLIRTSDAMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQ 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G Q +  ++D +  L     +   A + G E  GL    +E A     + + G  +
Sbjct: 188 LRKSGMQIVATAADGEVELADADLSQPTAWLFGNEAHGLGELLEE-ADMRVRIPLRGRAE 246

Query: 262 ALNVSNAAAVALY 274
           +LN++ AA++ LY
Sbjct: 247 SLNLATAASICLY 259


>gi|150003712|ref|YP_001298456.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254881058|ref|ZP_05253768.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|319640065|ref|ZP_07994792.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|149932136|gb|ABR38834.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254833851|gb|EET14160.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|317388343|gb|EFV69195.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 178

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA   + +    
Sbjct: 25  LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAEYSVEWRYKK 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  DA+Q++H  GF  + +       L  +++ D   K A+++G E KG++ +       
Sbjct: 85  NTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS    + L+   N   K
Sbjct: 145 CVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176


>gi|260949181|ref|XP_002618887.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
 gi|238846459|gb|EEQ35923.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
          Length = 405

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 111/300 (37%), Gaps = 67/300 (22%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           K + T  P   ++YG H V AAL    R  F  L   N          L   F VK +  
Sbjct: 99  KPKMTLNPLCEYVYGTHPVIAALTAKKRDAFSKLFIHNTKEHTPKILKLAKNFGVKIIEK 158

Query: 99  QTIDK--IVGKEAVHQGLALETAPLLSPTLDAVRN---------SQLLM----------- 136
            T  +  ++    VH G+ LET PL  P +  + N         S  LM           
Sbjct: 159 DTKGEMNVLSSNGVHNGVVLETKPLSFPLISTLENDFDGETGEYSVTLMNELTGDEKSFQ 218

Query: 137 ------------------VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                             +LD + DP N+G+I+R+A     D I+  +  S       AK
Sbjct: 219 HTVARHTPHNYKRFPFGLLLDGITDPQNVGSIIRTAYYLGVDFIVIPESESARLGPATAK 278

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS------------------DSKKPL 220
           +++GAL+ +   +  +    L  +   G+  +  SS                  ++K   
Sbjct: 279 ASAGALDLLTIYKTDDTLTFLDNVRKSGWNVVTTSSRMSEDELNSMKSKHRPALENKYIE 338

Query: 221 EQEI----KNDKIALILGAEGKGLRPKTQETATSM-----AHLHMPGIIKALNVSNAAAV 271
            QE+        + ++ G+EG G+R   +  +  +       L    ++ +LNV  AA++
Sbjct: 339 PQELPALMNQTPMLMVFGSEGAGVRTNIKFRSDYLVGLPKGRLETDEVVDSLNVGVAASL 398


>gi|238765059|ref|ZP_04625995.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           kristensenii ATCC 33638]
 gi|238696745|gb|EEP89526.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           kristensenii ATCC 33638]
          Length = 365

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 216 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAVLESGAAVRTAEGGAEHIKAIN 272

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 273 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVS 332

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +   G +++LNVS A  + L  +  QN
Sbjct: 333 VSIGGTGKVESLNVSVATGILLAEWWRQN 361


>gi|313826065|gb|EFS63779.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL063PA1]
          Length = 273

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L ++   V DP N G ++R A AF  D +I T+      +    +S+ G++ H+P +  
Sbjct: 121 RLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVVVG 180

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDK----IALILGAEGKGLRPKTQET 247
             L DA++  H    Q   L++D     L+   ++      IA ++G E  GL    +  
Sbjct: 181 VELADAVEWAHQ--HQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRAL 238

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A  +  + M G  ++LN+S AAAV LY T + 
Sbjct: 239 ADEIVGVPMWGAAESLNLSTAAAVVLYATASE 270


>gi|82545036|ref|YP_408983.1| methyltransferase [Shigella boydii Sb227]
 gi|81246447|gb|ABB67155.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320186384|gb|EFW61118.1| putative methyltransferase [Shigella flexneri CDC 796-83]
 gi|332092607|gb|EGI97679.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 3594-74]
          Length = 345

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++ ++PHN+G ++RS   F   G++  +  +  ES    ++A G  E +  I   
Sbjct: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAELVQSITGD 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+ + L      G+  +  SS+  KPL +     K+ L+LG E +GL    ++       
Sbjct: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +  LN+S A  V L  +  QN
Sbjct: 317 IDGTGNVAGLNISVATGVLLGEWWRQN 343


>gi|283777897|ref|YP_003368652.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283436350|gb|ADB14792.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 272

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 18/190 (9%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIG 148
           V  Q ++K+   + V + + +  +P  SP LD       A +   L+ V++ V  P N+G
Sbjct: 81  VSRQVMEKLAFGDRVEEVILVAESP--SPALDTFLQDKLAAKRDLLVAVVEGVEKPGNLG 138

Query: 149 AILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           AILRSA A   DG+I        Y+P+      +++ GAL  +P I ++ +  AL  +  
Sbjct: 139 AILRSADAAGIDGVIVCGARLDLYNPNA----IRASLGALFTLPVIGMT-VPQALAWLRM 193

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             FQ +    D            + A+ILG+E +GL  +          L M G + +LN
Sbjct: 194 HQFQMLATRVDGAIDYTTADLRGRTAIILGSEAEGLSREWLGDDIRAISLPMLGTVDSLN 253

Query: 265 VSNAAAVALY 274
           +S  AA+  Y
Sbjct: 254 LSVTAAILFY 263


>gi|148272891|ref|YP_001222452.1| hypothetical protein CMM_1709 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830821|emb|CAN01762.1| unnamed protein product [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 269

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           PV       ++++ G   +H+G LA    P L    D +R+++ ++VL+ + D  N+GAI
Sbjct: 78  PVFVGAAAVLERLTGYN-LHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVGAI 136

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+      D ++ T R +        + + G +  +P+ R+   ++A   +H  GF   
Sbjct: 137 FRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFHLA 196

Query: 211 GLS-SDSKKPLEQEIKN--DKIALILGAEGKGL 240
            L+  D    L+    +  ++IAL+LG EG GL
Sbjct: 197 ALALEDDAVTLDAFAADPPERIALVLGTEGDGL 229


>gi|292489188|ref|YP_003532075.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|291554622|emb|CBA22290.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
          Length = 344

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ + +PHN+G I+RS   F   G++     S  ES    ++A G  EH+  I   
Sbjct: 198 CVVALEDIGNPHNLGGIMRSCAHFGAKGLLVDD-ASLLESGAAVRTAEGGAEHVQAISGE 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L      G+  +  SS    PL       ++ L+LG E  GL   + +       
Sbjct: 257 SFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELPARMVLVLGQERDGLSDSSFQQGDLSVS 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 317 IGGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|145595526|ref|YP_001159823.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145304863|gb|ABP55445.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 321

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 5/187 (2%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAI 150
           PV    P  + +I G   VH+G+         PT  + +  ++ +++L+ VN+  N+G+I
Sbjct: 128 PVYAATPDVLRQITGFH-VHRGVLASFRRQRQPTAAEVLGTARRVVILEDVNNHTNLGSI 186

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+      D ++ +   +        + + G +  +PY  +    DAL ++ + GF  +
Sbjct: 187 FRAVAGLGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYATLGPWPDALAEVRAAGFSVL 246

Query: 211 GLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            L+ +    P++  +  +  + AL+LGAEG GL  +  E +     + M   + +LNV+ 
Sbjct: 247 ALTPAPDAVPIQRLEPGQRARAALLLGAEGSGLTREAMEASDVRLVIPMRRSVDSLNVAA 306

Query: 268 AAAVALY 274
           A AVA +
Sbjct: 307 ATAVACW 313


>gi|296425385|ref|XP_002842222.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638483|emb|CAZ86413.1| unnamed protein product [Tuber melanosporum]
          Length = 420

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 16/161 (9%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  R    +++LD + DP N+GAILRSA     D +  T R     S V  K+++GA E 
Sbjct: 252 DPKRRYPFVLMLDEILDPGNMGAILRSAYFLGVDAVTITARNCARLSPVCLKASAGAAEL 311

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILG 234
           +P    +     + +    G+          K             + + +K   + L++G
Sbjct: 312 LPIFEHAKSERMITQSTENGWTVYAAIPPPTKNQARRDRYVYAPEVAEVVKEGPVVLLVG 371

Query: 235 AEGKGLRPKTQETATSMAHL-HMPG---IIKALNVSNAAAV 271
            EG+GLRP  ++ A     L   PG   ++ +LNVS A A+
Sbjct: 372 NEGEGLRPPLKKLAKFCVSLVKGPGTDSLVDSLNVSVATAL 412


>gi|123443445|ref|YP_001007418.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090406|emb|CAL13274.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 368

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 7/150 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 221 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 277

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 278 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVS 337

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQNH 279
             +   G +++LNVS A  + L  +  QN 
Sbjct: 338 VSIGGTGKVESLNVSVATGILLSEWWRQNQ 367


>gi|32475172|ref|NP_868166.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
 gi|32445713|emb|CAD78444.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
          Length = 281

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 11/149 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALEH 186
           N  L++VLD V  P N+GA+ RSA A     ++ +     R++P+      + + GA+  
Sbjct: 130 NDGLILVLDRVEKPGNLGAVFRSADAAGVSAVLLSDCPSDRFNPNA----IRGSLGAVFT 185

Query: 187 IPYIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P    S +  +A  K H  G++   +  +  +PL       K+A++LG+E  GL  +  
Sbjct: 186 VPSASGSESQMEAFLKTH--GYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWA 243

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     L M G + +LNVS +AA+  +
Sbjct: 244 GDSIDPVALPMAGHVDSLNVSVSAAIVAF 272


>gi|324993655|gb|EGC25574.1| SpoU rRNA methylase [Streptococcus sanguinis SK405]
 gi|327462924|gb|EGF09245.1| SpoU rRNA methylase [Streptococcus sanguinis SK1]
 gi|327474528|gb|EGF19933.1| SpoU rRNA methylase [Streptococcus sanguinis SK408]
          Length = 246

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  ++  +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D ++   S     +   LSS S      + K +   L++G EG+G+ P+  E A  + H
Sbjct: 164 ADFIRLAQSSRLPILASTLSSTSIDYRNVDSK-ESFVLVMGNEGQGISPEMTEAADVLVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243


>gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
 gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
          Length = 261

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 75/150 (50%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T + + + QL +V++ + DP N+G I+R+A A   D I  +      ++  + ++++G+ 
Sbjct: 103 TEEEITDFQLGLVIERLQDPGNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSW 162

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P    S+LT  ++K  + G   I    D+ +   Q        ++LG EG GL    
Sbjct: 163 FQVPIFVTSDLTTVIKKSKNKGINIIATLPDATQSYWQLSFTKPTLILLGNEGSGLSNSL 222

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A ++  + +   +++LNV+ A A+ LY
Sbjct: 223 ISLADNLVSIPLGPGVESLNVAIATALLLY 252


>gi|304569674|ref|YP_009267.2| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232387|gb|ADP85241.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           RCH1]
          Length = 383

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 3/142 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD V DP N G + RS  A    G+I  +  +    A   ++A+GALE +P  R++
Sbjct: 232 LIIALDQVQDPGNAGTLARSLYALGGAGLIVPRHNAAYLGAGAHRAAAGALEKLPVARVA 291

Query: 194 NLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           NL  AL +    G+   G      S       ++   + L+LG E KG+RP   +   ++
Sbjct: 292 NLARALDEAAEAGYAIYGAMCGEGSVNAFTATLRTPCV-LVLGNEDKGIRPNVAKRCDTL 350

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
            H+ M     + NV+ A A+ L
Sbjct: 351 LHIPMLRDFDSFNVAQAGALLL 372


>gi|292900306|ref|YP_003539675.1| RNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200154|emb|CBJ47280.1| putative RNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|312173349|emb|CBX81604.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 344

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ + +PHN+G I+RS   F   G++     S  ES    ++A G  EH+  I   
Sbjct: 198 CVVALEDIGNPHNLGGIMRSCAHFGAKGLLVDD-ASLLESGAAVRTAEGGAEHVQAISGE 256

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L      G+  +  SS    PL       ++ L+LG E  GL   + +       
Sbjct: 257 SFAAGLDAFRQAGYTIVTTSSHQGVPLSSAELPARMVLVLGQERDGLSDSSFQRGDLSVS 316

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           +   G +++LNVS A  V L  +  QN
Sbjct: 317 IGGTGNVESLNVSVATGVLLAEWWRQN 343


>gi|50842892|ref|YP_056119.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
 gi|289426403|ref|ZP_06428146.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|50840494|gb|AAT83161.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
 gi|289153131|gb|EFD01849.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|313808089|gb|EFS46566.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA2]
 gi|313813590|gb|EFS51304.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL025PA1]
 gi|313819728|gb|EFS57442.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL046PA2]
 gi|313823743|gb|EFS61457.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL036PA2]
 gi|313829638|gb|EFS67352.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL063PA2]
 gi|313840042|gb|EFS77756.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL086PA1]
 gi|314919433|gb|EFS83264.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL050PA1]
 gi|314923955|gb|EFS87786.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL001PA1]
 gi|314954516|gb|EFS98922.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL027PA1]
 gi|314962173|gb|EFT06274.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL002PA2]
 gi|314963802|gb|EFT07902.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL082PA1]
 gi|314976761|gb|EFT20856.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL045PA1]
 gi|314984483|gb|EFT28575.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA1]
 gi|314986660|gb|EFT30752.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA2]
 gi|314990775|gb|EFT34866.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA3]
 gi|315079654|gb|EFT51644.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL053PA2]
 gi|315100540|gb|EFT72516.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL046PA1]
 gi|327327988|gb|EGE69757.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL103PA1]
 gi|327329586|gb|EGE71344.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL096PA2]
 gi|327444366|gb|EGE91020.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL043PA2]
 gi|327452174|gb|EGE98828.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL092PA1]
 gi|327452807|gb|EGE99461.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA3]
 gi|327457884|gb|EGF04539.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL083PA2]
 gi|328755365|gb|EGF68981.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA1]
 gi|328760149|gb|EGF73726.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL099PA1]
 gi|332675828|gb|AEE72644.1| tRNA/rRNA methyltransferase YsgA [Propionibacterium acnes 266]
          Length = 273

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L ++   V DP N G ++R A AF  D +I T+      +    +S+ G++ H+P +  
Sbjct: 121 RLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVVVG 180

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDK----IALILGAEGKGLRPKTQET 247
             L DA++  H    Q   L++D     L+   ++      IA ++G E  GL    +  
Sbjct: 181 VELADAVEWAHQ--HQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRAL 238

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A  +  + M G  ++LN+S AAAV LY T + 
Sbjct: 239 ADEIVGVPMWGAAESLNLSTAAAVVLYATASE 270


>gi|291524802|emb|CBK90389.1| rRNA methylases [Eubacterium rectale DSM 17629]
          Length = 302

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 35/219 (15%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     + K+ G       L     P      +  R+++ + VL+ V +P N+GAI
Sbjct: 80  IPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGAI 139

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-------------------- 190
            RSA A   D ++ T   S        + + G +  +P+                     
Sbjct: 140 FRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLHD 199

Query: 191 ----RISNLTDA--------LQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGA 235
               R  N +D         +  +H  GF+T  ++ +D    ++  + N  +++A++LG 
Sbjct: 200 KCDSRDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLNSEERLAIVLGT 259

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           EG GL  +T ++      + M   + +LNV+ A+AVA +
Sbjct: 260 EGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFW 298


>gi|282854556|ref|ZP_06263891.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|289427763|ref|ZP_06429474.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|295130948|ref|YP_003581611.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|282582138|gb|EFB87520.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|289159027|gb|EFD07220.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|291375145|gb|ADD98999.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
          Length = 271

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L ++   V DP N G ++R A AF  D +I T+      +    +S+ G++ H+P +  
Sbjct: 119 RLAVICAQVRDPGNAGTVIRCADAFGADCVILTRGSVDPHNPKTVRSSVGSIFHLPVVVG 178

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND----KIALILGAEGKGLRPKTQET 247
             L DA++  H    Q   L++D     L+   ++      IA ++G E  GL    +  
Sbjct: 179 VELADAVEWAHQ--HQMSVLAADGGGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRAL 236

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A  +  + M G  ++LN+S AAAV LY T + 
Sbjct: 237 ADEIVGVPMWGAAESLNLSTAAAVVLYATASE 268


>gi|260579765|ref|ZP_05847622.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
 gi|258602117|gb|EEW15437.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
          Length = 306

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 9/157 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +A   S ++ VL+ V D  NIG+I R+A   + D ++     +        + + G +  
Sbjct: 146 EAADTSGVIAVLEGVGDHENIGSIFRNAAGLNVDAVLFGAATADPLYRRSVRVSMGHVLR 205

Query: 187 IPYIRISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEG 237
           +P+ R    T   Q+    +   G++ + L+      L +      ++  K+A+++GAEG
Sbjct: 206 LPWARFPGTTTTWQRDLELLQRRGYEVVALTPAGDTTLREATEAARMRGRKVAVMVGAEG 265

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL       A   A + M     +LNV+ AAA+A Y
Sbjct: 266 PGLTEHAMRAADVRASIPMARGTDSLNVATAAAIAFY 302


>gi|172040800|ref|YP_001800514.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852104|emb|CAQ05080.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 269

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           AV+NS L+ V    N+P N G I+R A AF   G++        +     ++++G+L ++
Sbjct: 108 AVKNSPLIAVPVETNEPGNAGTIIRVADAFGAGGVLFAGNTVDPQGGKAVRASAGSLFNL 167

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE------IKNDKIALILGAEGKGLR 241
           P  R +++ + ++K+H   FQ +  ++D    L +       +     A + G E  GL 
Sbjct: 168 PVARNTSVVEVVEKLHEAEFQILATAADGDVNLHEAADPANGMLAQPTAWLFGNEAHGL- 226

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               + A     + M G  ++LN++ AA+V LY
Sbjct: 227 GDWLDLADIRVSIPMQGQAESLNLATAASVCLY 259


>gi|90021356|ref|YP_527183.1| von Willebrand factor, type A [Saccharophagus degradans 2-40]
 gi|89950956|gb|ABD80971.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
          Length = 256

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD V +P N+G I+RSA A   + II  ++       ++ K+++G L   P +R   
Sbjct: 113 ILALDGVTNPQNVGMIIRSACASPINAIILPEKGCAKLDPLVIKASTGTLFRAPILRCKT 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L+     G   IGL +++   L +E        +LG E +GL    +        +
Sbjct: 173 LASCLKAFAESGADIIGLDANAPHTLGEEPLTGAKVFVLGNETEGLSSDVRAICNKHVSI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M   +++LNV+  A++  +
Sbjct: 233 PMLNNVESLNVAVTASLIAF 252


>gi|172041241|ref|YP_001800955.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852545|emb|CAQ05521.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 286

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++ +L+ V D  NIGA+ R+A     D ++     +        + + G +  +P+ R S
Sbjct: 130 VIAILEGVGDHENIGALFRNAAGLGVDAVLFGAATADPLYRRAVRVSMGHVLRVPWARFS 189

Query: 194 ----NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------KNDKIALILGAEGKGLR 241
               N    L  +   GFQ I ++ D++  L   +        +  +IA+++GAEG GL 
Sbjct: 190 GKTTNWQHGLDAVREAGFQIIAMTPDTELSLADAVLAVRREQGEGARIAIMVGAEGPGLT 249

Query: 242 PKTQETATSMAHL-HMPGIIKALNVSNAAAVALYITQ 277
                 A   A +  MPG   +LNV+ AAA+  Y ++
Sbjct: 250 EHAMRAADMRAKIPMMPG-TDSLNVATAAAIGFYASR 285


>gi|170782313|ref|YP_001710646.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156882|emb|CAQ02050.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 284

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            PV       ++++ G   +H+G LA    P L    D +R+++ ++VL+ + D  N+GA
Sbjct: 92  VPVFVGAAAVLERLTGYN-LHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVGA 150

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+      D ++ T R +        + + G +  +P+ R+   ++A   +H  GF  
Sbjct: 151 IFRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFHL 210

Query: 210 IGLS-SDSKKPLEQEIKN--DKIALILGAEGKGL 240
             L+  D    L+    +  ++IAL+LG EG GL
Sbjct: 211 AALALEDDAVTLDAFAADAPERIALVLGTEGDGL 244


>gi|224538883|ref|ZP_03679422.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519490|gb|EEF88595.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 227

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 6/141 (4%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  R+++ ++V+D V D  NIGAI RSA A   D ++ T+      +    + + G++  
Sbjct: 74  DTCRDARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGSVFL 133

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPK 243
           +P+   + L   L  +   GF+T  + L+ DS    +  + ++ ++A+++G EG+GL P 
Sbjct: 134 VPW---TWLDGTLSDLARHGFRTAAMALTDDSISIADPVLASEPRLAIVMGTEGEGLPPD 190

Query: 244 TQETATSMAHLHMPGIIKALN 264
           T   A  +  + M   + +LN
Sbjct: 191 TIAAADYVVRIPMAHGVDSLN 211


>gi|51595204|ref|YP_069395.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|51588486|emb|CAH20094.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 390

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 241 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 297

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 298 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 357

Query: 252 AHLHMPGIIKALNVSNAAAV--ALYITQN 278
             +   G +++LNVS A  +  A +  QN
Sbjct: 358 VSIGGTGRVESLNVSVATGILLAEWWRQN 386


>gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
 gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
          Length = 270

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           RN  ++++LD + DP N+G I+R+AVA   +GII  K      +  + +++ GA+  IP 
Sbjct: 114 RNRGIILILDRIQDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGAIFSIPI 173

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +   +    LQK+      ++ I    ++ K   +    + + L++G E +G+R +    
Sbjct: 174 LTGVSFK-RLQKIRDEYPDYKLICTDLNTSKFYHEIDYQEPLMLVIGNEARGIREELLSL 232

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + + G I +LN + + A+ LY
Sbjct: 233 ADIKIKIPLMGNIDSLNAAVSTAIVLY 259


>gi|294667071|ref|ZP_06732297.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603163|gb|EFF46588.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 305

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + L  V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 154 LALWLCGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 213

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   AL ++   GF       D  + +       ++  ++GAE +G+             
Sbjct: 214 DTATALAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLS 273

Query: 254 LHMPGIIKALNVSNAAAV 271
           +   G +++LNV++A AV
Sbjct: 274 IRGSGKVESLNVASATAV 291


>gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 269

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 10/152 (6%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGA 183
           A+R   +L+V +    P NIGA+LR+A A + +G+I     T  Y+P+    + +++ G 
Sbjct: 112 ALRERSILLVAEAPEKPGNIGAMLRTADAANIEGVIIANPKTDLYNPN----IIRASVGC 167

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242
           +  +P I + + T+ +  +    F     +  + KP  E        A+++G E +GL  
Sbjct: 168 VFTVP-IAVGSTTEVIDYLKKKDFNIYCAALSASKPYYEVPFAEKNTAIVVGTEDEGLTQ 226

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  + +T    + M G+I ++NVS AAAV ++
Sbjct: 227 EWLKNSTQNIIIPMEGVIDSMNVSVAAAVLIF 258


>gi|332160630|ref|YP_004297207.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604499|emb|CBY25997.1| hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664860|gb|ADZ41504.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 368

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 7/150 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 221 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 277

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 278 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMS 337

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQNH 279
             +   G +++LNVS A  + L  +  QN 
Sbjct: 338 VSIGGTGKVESLNVSVATGILLSEWWRQNR 367


>gi|237751640|ref|ZP_04582120.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
 gi|229373006|gb|EEO23397.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
          Length = 235

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG+  +  P+      A+ +   L+VL  ++D  NIGAI+R+A A    GI+ + R + 
Sbjct: 61  HQGVFAKIKPIEQTPFKALLDFSSLVVLCGMSDIGNIGAIVRTAYALGIGGIVISDRDTL 120

Query: 171 SESAV--LAKSASGALEHIPY-IRISNLTDALQ-KMHSWGFQTIGLSSDSKKPLEQEIKN 226
           +  A+  + +S+SGAL ++P+    S+L+ A + KM    F  IG   ++K  LE     
Sbjct: 121 NTQALEGIFRSSSGALLNMPFSFHKSSLSVANEAKMKQ--FTLIGAGKNNKNILEST--P 176

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +K A+ +G E  GL  K         H+ M     +LN S AA + +
Sbjct: 177 NKWAIFIGREDTGLPQKLLNKLDYALHIAMCNGFDSLNASVAAGILI 223


>gi|162418675|ref|YP_001607797.1| putative methyltransferase [Yersinia pestis Angola]
 gi|162351490|gb|ABX85438.1| RNA methyltransferase, TrmH family [Yersinia pestis Angola]
          Length = 388

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 239 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 295

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 296 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 355

Query: 252 AHLHMPGIIKALNVSNAAAV--ALYITQN 278
             +   G +++LNVS A  +  A +  QN
Sbjct: 356 VSIGGTGRVESLNVSVATGILLAEWWRQN 384


>gi|237821623|ref|ZP_04597468.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 135

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 6/135 (4%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQ 200
           DP N+G I+R+A A    G+I + + +   S    +S  G+  H+P  R+++  L D  +
Sbjct: 1   DPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQALLDETK 60

Query: 201 KMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           K+      T  LS DS    E   I+N    L++G EG+G+ P   E+A  + H+ M G 
Sbjct: 61  KVAIPVLATT-LSKDSVDYRELPSIEN--FVLVMGNEGQGISPLMAESADQLVHISMKGQ 117

Query: 260 IKALNVSNAAAVALY 274
            ++LNV+ AA + ++
Sbjct: 118 AESLNVAVAAGILIF 132


>gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 289

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+ VL HV DP N G +LR+A A  CD ++ T       +    ++++G+L H+P +  +
Sbjct: 118 LVTVLAHVRDPGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAGSLFHVPVVAGT 177

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETAT 249
                +  +   G   +      +  L+  +    +    A + G E  GL  +      
Sbjct: 178 RFETLIGALRECGLTVLAADGAGEHTLDAALDGGLLDRPTAWVFGNEAWGLPEEILRAVD 237

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + + G  ++LN++ AAAV LY
Sbjct: 238 HVVRVPIYGRAESLNLATAAAVCLY 262


>gi|40786353|dbj|BAD07003.1| conserved hypothetical protein [Onion yellows phytoplasma]
          Length = 119

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 61/112 (54%)

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +K++    ++ +AK + GALE+     ++NL   + K+       +G  S+S +   Q  
Sbjct: 2   SKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIP 61

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           KN  +A+I+G EG G+R   ++    +  + M G I +LNVS AAA+ +Y T
Sbjct: 62  KNSSLAIIVGNEGIGIRHLLKQQCDFLVKIPMYGKINSLNVSVAAALMIYST 113


>gi|68535492|ref|YP_250197.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68263091|emb|CAI36579.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 306

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 9/157 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +A   S ++ VL+ V D  NIG+I R+A   + D ++     +        + + G +  
Sbjct: 146 EAADTSGVIAVLEGVGDHENIGSIFRNAAGLNVDAVLFGAATADPLYRRSVRVSMGHVLR 205

Query: 187 IPYIRISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEG 237
           +P+ R    T   Q+    +   G++ + L+      L +      ++  K+A+++GAEG
Sbjct: 206 LPWARFPGTTTTWQRDLELLQRRGYEVVALTPAGDTTLREATEAARMRGRKVAVMVGAEG 265

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL       A   A + M     +LNV+ AAA+A Y
Sbjct: 266 PGLTEHAMRAADVRASIPMARGTDSLNVATAAAIAFY 302


>gi|254432253|ref|ZP_05045956.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
           7001]
 gi|197626706|gb|EDY39265.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
           7001]
          Length = 229

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186
           R + L ++L+HV  PHN+ AILRS     CD +   + ++      L     +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILRS-----CDAVGVLEAHAVCLKGRLPTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P  R  +   ALQ +   GF+  G  LS+++      +      A +LGAE  GL P+ 
Sbjct: 73  VPLHRHPSAAAALQSLREQGFRLYGTHLSAEAVDYRSCDF-TGPTAFVLGAEKWGLSPEC 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS A A  L+
Sbjct: 132 AGLVDQAIVIPMSGMVQSLNVSVATATLLF 161


>gi|297181103|gb|ADI17301.1| rRNA methylases [uncultured actinobacterium HF0070_17F14]
 gi|297181194|gb|ADI17389.1| rRNA methylases [uncultured Verrucomicrobiales bacterium
           HF0070_30L02]
          Length = 254

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRI 192
           +++VL  + DP N+G ++R+A A + D ++      P    AV  ++++G++  +P ++ 
Sbjct: 112 VVLVLAGIGDPGNLGTLVRAADAVAADAVVVVGGADPWGPKAV--RASAGSMLRVPIVQY 169

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             L D +  +   G   +G      +P +Q + +  +A+++G+E  GL       A   A
Sbjct: 170 DQLDDTVDALREAGVTVVGTDVTGGEPFDQGVLDRPVAIVMGSEPHGLDRGVDLDA--WA 227

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
           H+ MPG  ++LNV+ A  + LY
Sbjct: 228 HIAMPGRTESLNVAMAGTLLLY 249


>gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
 gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
          Length = 261

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 78/144 (54%), Gaps = 4/144 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+ ++ L++V+DP N G I+R+A AF  + I+T        S VL ++  GA+     I 
Sbjct: 116 SKNIICLENVSDPGNFGTIIRTANAFGINDILTINCVDKYNSKVL-RATMGAIFRTNIID 174

Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                + ++++ S G++ I  + S + K LE+   + K  +++G E  G+  +  + + +
Sbjct: 175 CK--IEKIKELQSGGYRLISTTLSKNSKFLEEFTFDGKNIVVMGNEANGISAEMLKISNN 232

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M   +++LNVS AAA+ +Y
Sbjct: 233 HLKIDMDNSMESLNVSIAAAIIMY 256


>gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
 gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
          Length = 265

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 110/254 (43%), Gaps = 14/254 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +    +L+ +       DW  + 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGVAVELIVSDQTDLPKDWTVSD 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I K++ +    QG+           +D      LL  LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKVLRETETTQGV-FAVCEKHEKEVDLTDGKFLL--LDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A     ++  +      ++ + +S  G++ H+P ++  NL + + K+     
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPIVK-GNLEEWVDKLKEKNV 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G + ++     +       ALI+G EG G+R +         ++ + G  ++LNV+ 
Sbjct: 190 PVYGTALENGVSYGEVTPTGSFALIVGNEGNGVRQEILTKCDQNLYIPIYGGAESLNVAV 249

Query: 268 AAAVALYITQNHFA 281
           AA +  Y  Q+  A
Sbjct: 250 AAGILTYYLQSPVA 263


>gi|296270012|ref|YP_003652644.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296092799|gb|ADG88751.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 277

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 1/164 (0%)

Query: 112 QGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           QGL      +  P  +AVR  ++L+ VL HV DP N G +LR+A A   D ++ T     
Sbjct: 93  QGLVAVCRFVHVPLEEAVRPGARLVAVLAHVRDPGNAGTVLRTADAAGADAVVFTDASVD 152

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++++G+L H+P    +   + +++    G + +   +   + L++   +   A
Sbjct: 153 PYNGKCVRASAGSLFHLPVSINARFPETVRQAREAGLRILAADASGARTLDEVDLSRPTA 212

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + G E  GL P+  E A  +  + + G  ++LN++ AAAV LY
Sbjct: 213 WVFGNEAWGLPPELLELADEVVRVPIYGRAESLNLATAAAVCLY 256


>gi|197104628|ref|YP_002130005.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196478048|gb|ACG77576.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 235

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 92/212 (43%), Gaps = 6/212 (2%)

Query: 67  KIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSP 124
           +I  +L  +N LA L    A+LP   PV       +D IVG   +H+G LAL   P  S 
Sbjct: 18  RIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGFP-IHRGILALGRRPERSA 76

Query: 125 T--LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              L  + +  L++ L  + +  NIG I R+A AF    +I              + + G
Sbjct: 77  AGLLAGLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDAACCDPLYRKAIRVSVG 136

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A   +P+ R+    D +  +   G + + LS   +  L       ++A + GAEG GL P
Sbjct: 137 AALTMPFARLEAGEDLVGALAGAGLEVLALSPAGETDLADLAPPARVAALFGAEGPGL-P 195

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 T    + M G   +LNV+  + + L+
Sbjct: 196 DDVLARTRTVRIPMAGGFDSLNVATTSGIVLH 227


>gi|308070687|ref|YP_003872292.1| rRNA methylase [Paenibacillus polymyxa E681]
 gi|305859966|gb|ADM71754.1| rRNA methylase [Paenibacillus polymyxa E681]
          Length = 262

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 20/184 (10%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           T  PQ++  IV KE      AL   P      DA     L+MVLD V DP N+G I+RSA
Sbjct: 88  TKTPQSVFAIVRKEERSVFSALLEQP------DA-----LVMVLDGVQDPGNVGTIIRSA 136

Query: 155 VAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            A    G+I        Y+P       +S  G+L H+P I   +L + L +  S G + I
Sbjct: 137 DAAGAAGVILGHGCADLYNPKT----IRSTMGSLFHLPVIE-GSLEEFLPQAKSKGARLI 191

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             S D+              L++G EG+G+   T         + M G  ++LN + A+ 
Sbjct: 192 STSLDASLSCYTIDLRVSTWLVIGNEGQGISAATARMVDESVFIPMQGQAESLNAAMAST 251

Query: 271 VALY 274
           V L+
Sbjct: 252 VLLF 255


>gi|254883838|ref|ZP_05256548.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641488|ref|ZP_07996178.1| rRNA methylase [Bacteroides sp. 3_1_40A]
 gi|254836631|gb|EET16940.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386889|gb|EFV67778.1| rRNA methylase [Bacteroides sp. 3_1_40A]
          Length = 268

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI 
Sbjct: 79  PVYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++ T+      +    + + G++  +P+   + L   +  ++ +GF+T  
Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNCRAVRVSMGSVFLVPW---TWLNGTIGDLNKFGFRTAA 195

Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++ +D    ++  I     ++A+++G EG GL  KT   A  +  + M   + +LN
Sbjct: 196 MALTDDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLN 251


>gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228]
          Length = 246

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 38/236 (16%)

Query: 42  HTSQPE--NLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPP 98
           + SQ E   LF+     +S+++ + +++++Q+ L    AL+               TV P
Sbjct: 42  YQSQIEVIQLFIVDTDRMSSSIIDYAKEVYQINLKVAEALS--------------GTVTP 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           Q    I+ K                PT D     Q+L++ D + DP N+G ++R+A A  
Sbjct: 88  QGFFAIIKK----------------PTYDKTLAKQVLLI-DRIQDPGNLGTLIRTADAAG 130

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D I+  K  +      + +++ G++ HIP I      D    +H +     G + ++  
Sbjct: 131 LDLIVMEKGTADPFQDKVIRASQGSIFHIPVI----FDDINNYIHQFNGPVYGTALENAV 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                      ALILG EG+G+ P   +  T    + + G  ++LNV+ A ++ +Y
Sbjct: 187 SFNDIEAQANFALILGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSILMY 242


>gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. SIP3-4]
 gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. SIP3-4]
          Length = 260

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +P L      + +++L+ + DP N+G++LRSA A     +  ++  + + S    +   G
Sbjct: 103 TPQLPLPETLEFVLMLEDIQDPGNLGSMLRSAAAAGVQAVYLSEGCAEAWSPKALRGGQG 162

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A   +P +  S+L   L    ++  +T+      +   EQ+++   +A ++G EG GL  
Sbjct: 163 AQFVLPVVERSDL---LALTGNFPGETLATVMQGESLYEQDLRQ-PVAFLIGNEGAGLSL 218

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K Q  A+   H+ M G +++LN + A ++ ++
Sbjct: 219 KLQAAASRKIHIPMQGQVESLNAAAATSICVF 250


>gi|39974237|ref|XP_368509.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
 gi|145018333|gb|EDK02612.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
          Length = 616

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 24/157 (15%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD + DP N+G ILR+A       ++ ++R S + + V  K+A+GA E +P     
Sbjct: 435 LVLLLDRILDPGNLGNILRTASFLGVSAVVISQRNSATLTPVALKAAAGASETLPLFACD 494

Query: 194 NLTDAL--QKMHSWGFQTIGLSSDSKKPLEQEIKN---------DKIALILGAEGKGL-- 240
           N    L   K   W        S S+K  EQ++ +         D   L++G+EG+GL  
Sbjct: 495 NPASFLHNSKESGWKIYAAVAPSRSRKKSEQDVYDIEDLDPLATDPCVLVVGSEGEGLPT 554

Query: 241 --RPKTQETAT----SMAHLHMPGIIKALNVSNAAAV 271
             + K+    T    S AH      I +LNVS AA +
Sbjct: 555 MIKTKSHHAVTIPNSSGAH-----TIDSLNVSVAAGL 586


>gi|53719753|ref|YP_108739.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
 gi|53723724|ref|YP_103180.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|67641695|ref|ZP_00440464.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
           4]
 gi|121599003|ref|YP_993356.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124384612|ref|YP_001029207.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126438845|ref|YP_001059453.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126448589|ref|YP_001080863.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|126452067|ref|YP_001066736.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|134277081|ref|ZP_01763796.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
 gi|167000565|ref|ZP_02266376.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
 gi|167720148|ref|ZP_02403384.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei DM98]
 gi|167739155|ref|ZP_02411929.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 14]
 gi|167824745|ref|ZP_02456216.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 9]
 gi|167846277|ref|ZP_02471785.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei B7210]
 gi|167894858|ref|ZP_02482260.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 7894]
 gi|167903247|ref|ZP_02490452.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167919498|ref|ZP_02506589.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei BCC215]
 gi|226200151|ref|ZP_03795697.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812792|ref|YP_002897243.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           MSHR346]
 gi|242314873|ref|ZP_04813889.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106b]
 gi|254177512|ref|ZP_04884167.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
 gi|254179337|ref|ZP_04885936.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
 gi|254197657|ref|ZP_04904079.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
 gi|254200132|ref|ZP_04906498.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
 gi|254206470|ref|ZP_04912822.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
 gi|254261411|ref|ZP_04952465.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710a]
 gi|254297221|ref|ZP_04964674.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
 gi|254358122|ref|ZP_04974395.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
 gi|52210167|emb|CAH36146.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
 gi|52427147|gb|AAU47740.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 23344]
 gi|121227813|gb|ABM50331.1| RNA methyltransferase, TrmH family [Burkholderia mallei SAVP1]
 gi|124292632|gb|ABN01901.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10229]
 gi|126218338|gb|ABN81844.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 668]
 gi|126225709|gb|ABN89249.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106a]
 gi|126241459|gb|ABO04552.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10247]
 gi|134250731|gb|EBA50810.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
 gi|147749728|gb|EDK56802.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
 gi|147753913|gb|EDK60978.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
 gi|148027249|gb|EDK85270.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
 gi|157807495|gb|EDO84665.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
 gi|160698551|gb|EDP88521.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
 gi|169654398|gb|EDS87091.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
 gi|184209877|gb|EDU06920.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
 gi|225927835|gb|EEH23876.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505869|gb|ACQ98187.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           MSHR346]
 gi|238522656|gb|EEP86099.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
           4]
 gi|242138112|gb|EES24514.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106b]
 gi|243063496|gb|EES45682.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
 gi|254220100|gb|EET09484.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710a]
          Length = 262

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 9/252 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    + E   L G H  SA L+   +    ++ T  ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCVV-TDGALAHEEAR 65

Query: 85  ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142
             +    P + V  P  +   +       GL L  A P  +P L A R +   +VLD V 
Sbjct: 66  GIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGTSVVLDGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A   + +      + + S+ + +SA GA  H   + I    DA   +
Sbjct: 123 DAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTLI 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + +        +A + G EG G+  + +E AT    +  PG +++
Sbjct: 180 ERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALY 274
           LNV+ AAAV L+
Sbjct: 240 LNVAAAAAVCLF 251


>gi|328946840|gb|EGG40977.1| SpoU rRNA methylase [Streptococcus sanguinis SK1087]
          Length = 269

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 128 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 186

Query: 196 TDALQKMHSWGF----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            D ++   S        T+ L+S   + ++ +   +   L++G EG+G+ P+    A  +
Sbjct: 187 ADFIRLAQSSSLPILASTLSLTSIDYREVDSK---ESFVLVMGNEGQGISPEMTAAADIL 243

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ M G  ++LNV+ AA + ++
Sbjct: 244 VHISMKGQAESLNVAVAAGILIF 266


>gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
           2876]
 gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
           2876]
          Length = 246

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 2/149 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +L+VL+++ DP N+G I+R+A      GII + +     +    +S  G+L  +P++   
Sbjct: 96  MLVVLENIQDPGNLGTIIRTAEGAGATGIIMSDKTVDIYNPKTIRSTMGSLFRMPFVYSE 155

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++  A+  +     +      + +    +E     +A+++G EG GL  +  + A     
Sbjct: 156 DVVAAIHSLKQQNIKVFAAHLEGRNYYYEEDMKVPMAVLIGNEGNGLTEELSKEADVRIK 215

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHF 280
           + M G +++LN + + AV LY  + Q H 
Sbjct: 216 IPMEGKLESLNAAVSTAVILYEAMRQRHI 244


>gi|262366971|gb|ACY63528.1| tRNA/rRNA methyltransferase [Yersinia pestis D182038]
          Length = 213

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 64  CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 120

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +    L      G+  +  SS     L +     K+ L+LG E  GL     +     
Sbjct: 121 ADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLS 180

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             +   G +++LNVS A  + L
Sbjct: 181 VSIGGTGRVESLNVSVATGILL 202


>gi|322385982|ref|ZP_08059622.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
 gi|321269965|gb|EFX52885.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
          Length = 286

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A    G+  +   +   +    +S  G+  H+P  R+S  
Sbjct: 145 LFLEDVQDPGNVGTIIRTADAAGYQGVFISSHSADIYNLKTLRSMQGSHFHLPIYRVSR- 203

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D L        Q +  + S+     ++  K++   L++G EG+G+  +  E A  + H+
Sbjct: 204 EDMLALARQSDLQILASTLSEYSVDYQKVEKHEDFLLVMGNEGQGISQEMTEVADVLVHI 263

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G  ++LNV+ AA + ++
Sbjct: 264 SMKGQAESLNVAVAAGILMF 283


>gi|268608625|ref|ZP_06142352.1| hypothetical protein RflaF_03872 [Ruminococcus flavefaciens FD-1]
          Length = 214

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 10/191 (5%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P+ T   + I  I G   V   L       L    +  R  + + VL++V +P N+GAI
Sbjct: 20  IPLYTGEEEEITAITGFRLVRGALCAMRRRELPSAEELCRGKKRIAVLENVVNPTNMGAI 79

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY----IRISNLTDALQKMHSWG 206
            RSA A   + +I T   +       ++ + G +  +P+     R     D L   H  G
Sbjct: 80  FRSAAALGMEAVILTSDCTDPLYRRSSRVSMGTVFQVPWTIMKCRNEEYPDIL---HGLG 136

Query: 207 FQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           ++   ++  D+   ++ +  N  +K+A+I+G EG+GL   T +       + M   + +L
Sbjct: 137 YKMAAMALKDNSVDIDDDRLNSEEKLAVIMGTEGEGLADHTIDACDYTVKIPMYNGVDSL 196

Query: 264 NVSNAAAVALY 274
           NV+ A+AVA +
Sbjct: 197 NVAAASAVAFW 207


>gi|254189277|ref|ZP_04895788.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157936956|gb|EDO92626.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 262

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 9/252 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    + E   L G H  SA L+   +    ++ T  ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCVV-TDGALAHEEAR 65

Query: 85  ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142
             +    P + V  P  +   +       GL L  A P  +P L A R +   +VLD V 
Sbjct: 66  GIVARIEPTRVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGTSVVLDGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A   + +      + + S+ + +SA GA  H   + I    DA   +
Sbjct: 123 DAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTLI 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + +        +A + G EG G+  + +E AT    +  PG +++
Sbjct: 180 ERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALY 274
           LNV+ AAAV L+
Sbjct: 240 LNVAAAAAVCLF 251


>gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 246

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 81/147 (55%), Gaps = 6/147 (4%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHI 187
           +  +Q ++++D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G++ H+
Sbjct: 101 ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQGSVFHL 159

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P + I +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P+    
Sbjct: 160 P-VMIQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAH 215

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
            T    + + G  ++LNV+ A ++ LY
Sbjct: 216 TTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|145295523|ref|YP_001138344.1| hypothetical protein cgR_1451 [Corynebacterium glutamicum R]
 gi|140845443|dbj|BAF54442.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 271

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V     +P N G ++R + A   D ++          A   +S++G+L HIP  R 
Sbjct: 118 RLVSVPVETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARN 177

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250
           +N+ D L ++ S G Q +  S+D +  L+   E+     A + G E  GL       A  
Sbjct: 178 NNIADVLGQLRSKGLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADH 237

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + + G  ++LN++ AA++ LY
Sbjct: 238 RVRIPIRGRAESLNLATAASICLY 261


>gi|310643902|ref|YP_003948660.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus polymyxa SC2]
 gi|309248852|gb|ADO58419.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus polymyxa SC2]
          Length = 262

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 107/262 (40%), Gaps = 51/262 (19%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF------- 91
           + +H ++     + G+H V  AL +         A   ++A  D D  +P          
Sbjct: 19  EKKHRTRQHKYIVEGIHLVQEALRSN--------AAVESVA-YDLDKGIPAELNGLDSAD 69

Query: 92  -PVKTVP--------------PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            PV+ +P              PQ++  IV KE      AL   P      DA     L+M
Sbjct: 70  QPVEWIPVSAAVIAKCTDTKTPQSVFAIVRKEERSAFAALLEQP------DA-----LVM 118

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRI 192
           VLD V DP N+G I+RSA A    G+I        Y+P       +S  G+L H+P I  
Sbjct: 119 VLDGVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKT----IRSTMGSLFHLPVIE- 173

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +L + L +  S G + +  S D+              L++G EG+G+   T        
Sbjct: 174 GSLEELLPQAKSKGARLLSTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATASMVDESV 233

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G  ++LN + A+ V L+
Sbjct: 234 FIPMQGQAESLNAAMASTVLLF 255


>gi|300778322|ref|ZP_07088180.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300503832|gb|EFK34972.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 241

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 31/251 (12%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH 89
           K +QS ++K     Q  NLFL   + +   L N + K+ ++L+T    L R D       
Sbjct: 8   KVLQSLDKKKFR--QKYNLFLVEGNKIICELFNSNFKVKEILSTDPQKLDRTD------- 58

Query: 90  PFPVKTVPPQTIDKI----VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
             PV  +    + KI      K++V      E   L         +  + +VLD + DP 
Sbjct: 59  -IPVTHISENELKKISFLKTPKDSVAVCYLAEEKKL--------EDKNIQLVLDGIQDPG 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F  + +I ++      +  + ++  G+   +  +  ++L + L K  + 
Sbjct: 110 NLGTIIRLADWFGIEQVICSEDTVDVYNPKVIQATMGSFTRVNVVY-TDLVEYLSKTENV 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ---ETATSMAHLHMPGIIKA 262
               IG   + +     E K +KI LILG EG G+RP+T+   + + S+         ++
Sbjct: 169 ---NIGTDMEGENIYTFE-KPEKINLILGNEGNGMRPETEKLLQKSISIPRFGKSQSTES 224

Query: 263 LNVSNAAAVAL 273
           LNVS AA + L
Sbjct: 225 LNVSMAAGIIL 235


>gi|284989407|ref|YP_003407961.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284062652|gb|ADB73590.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 269

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 23/241 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +++ ++          + + GV  V   L +P R +  +L     LA LD    LP
Sbjct: 18  DFRDLKAGDRPPGTERGTGPVIVEGVPAVERLLTSPYR-VRAVLGVPGRLAALD----LP 72

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPT-LDAVRNS------QLLMVL 138
                + VP    DK V  E +   L    L +A    P  LDA+         + L VL
Sbjct: 73  -----EGVPAYEADKWVLSEVIGFRLTRGVLASADRRPPADLDALLTGPDPAAPRRLAVL 127

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + +ND  N+G+I RSAVA   DG++   R +        + + G +  +P+  + +    
Sbjct: 128 EALNDAENLGSIARSAVALGVDGLLLDPRCADPLYRRSVRVSMGHVLALPFAALPDWPGG 187

Query: 199 LQKMHSWGFQTIGLS--SDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLH 255
           L ++H  G+ T+ L+   D+    E + + + + A++LGAEG GL P+ Q  A   A + 
Sbjct: 188 LDRLHDAGYLTVALTPAEDAVDLAEVDPRAHPRTAVLLGAEGPGLTPQAQRAARVRARIP 247

Query: 256 M 256
           M
Sbjct: 248 M 248


>gi|325677835|ref|ZP_08157477.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
 gi|324110389|gb|EGC04563.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
          Length = 270

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 112 QGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           QG+ + TA  L   L  D ++     +VLD + DP N+G ++R+A A   DG++ +    
Sbjct: 100 QGVFV-TAKRLDKALSADGLKAGGKYLVLDELQDPGNLGTMIRTADAVGLDGVVLSGNCV 158

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +    +SA G++  +      +     + +   G +T     D    ++Q       
Sbjct: 159 DLYNPKTVRSAVGSMPRVDIFVEKDFEAVTEMLGKKGIRTAAAVIDGGTEIKQFDFGGGC 218

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G EG+GL  +  E  +    + M G I +LN + AA + L+
Sbjct: 219 AVVIGNEGRGLSQEHVEMCSDRVTIKMYGHIDSLNAATAATIFLW 263


>gi|293364739|ref|ZP_06611456.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
 gi|291316189|gb|EFE56625.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
          Length = 246

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 23/184 (12%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           T  PQ I  ++ KE V               L   R  + L  L+ V DP N+G ++R+A
Sbjct: 79  TQTPQGIVAVIQKEEV--------------GLPDFRQGKYLF-LEDVQDPGNVGTMIRTA 123

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---ISNLTDALQKMHSWGFQTIG 211
            A    G+I + + +   S    +S  G+  H+P  R   +S + +A  K  +       
Sbjct: 124 DAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPLVSFVEEA--KKSNLPILATT 181

Query: 212 LSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           LS DSK   E   ++N    L++G EG+G+     E+A  + H+ M G  ++LNV+ AA 
Sbjct: 182 LSRDSKDYRELSSLEN--FVLVMGNEGQGISSVMAESADQLVHIGMKGRAESLNVAVAAG 239

Query: 271 VALY 274
           + ++
Sbjct: 240 ILMF 243


>gi|288957122|ref|YP_003447463.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909430|dbj|BAI70919.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 279

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 19/190 (10%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIG 148
           P + V    + K+ G   +H G+    AP   P  D   A R ++ L++LD V +PHN+G
Sbjct: 81  PYRMVEADELAKVAGT-VLHGGVVALMAPRTLPLFDTEAARRAAEPLLILDGVGNPHNLG 139

Query: 149 AILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           AILR+A  F    ++ +       PSE+A   + A G  E +   R   L   L+++ + 
Sbjct: 140 AILRTAAFFGLPRVLVSDHPGQALPSEAAY--RVAEGGFEWVALERAPALPAVLKRLRA- 196

Query: 206 GFQTIGLSSDSKKP---------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             +  G + D  +P            +      A++LG E  G+ P T     ++  +  
Sbjct: 197 SHRLFGTALDQSRPAVDAGALTGWRGKADTKPPAVVLGNEEDGIPPATLAACEAVLTIPG 256

Query: 257 PGIIKALNVS 266
            G +++LNV+
Sbjct: 257 SGHVQSLNVA 266


>gi|119493555|ref|ZP_01624220.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
 gi|119452609|gb|EAW33791.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
          Length = 328

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           + TAP   P   A+  +Q+ + L+ V DP N+G ++R+A A   DG+  +      +   
Sbjct: 156 IATAPRPQPQTVAI--TQIGLALETVQDPGNLGTMIRTAAAAGIDGLWLSDDSVDLDHPK 213

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++++GA   +P     +LT+ L      G Q +    D+     +        ++LG 
Sbjct: 214 VLRASAGAWFRLPMAVGGDLTEQLTIAQQQGVQIVATLPDADLTYWELDFQQPTIVVLGN 273

Query: 236 EGKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALYITQNH 279
           EG GL   +  TA +  H+ +P  G +++LNV+  AA+ LY  Q  
Sbjct: 274 EGAGL--SSSLTALADQHVQIPLSGGVESLNVAICAALMLYEGQRQ 317


>gi|289551058|ref|YP_003471962.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180590|gb|ADC87835.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
           HKU09-01]
          Length = 246

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 5/156 (3%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           A +  P  D     Q+L++ D + DP N+G ++RSA A   D I+  K  + +    + +
Sbjct: 92  AVIEKPNYDVTHAKQVLLI-DRIQDPGNLGTLIRSADAAGIDLIVMEKGTADAYQDKVLR 150

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ G++ HIP +  ++L   +++     F T   ++ S K LE +   +  AL+LG EG 
Sbjct: 151 ASQGSVFHIPVVT-ADLQGFIKQFEGPVFGTALENAVSYKNLEPQ---ETFALLLGNEGD 206

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+     E  T    + + G  ++LNV+ A ++ LY
Sbjct: 207 GVNNALLEHTTKNLIIPIYGKAESLNVAIAGSILLY 242


>gi|323351009|ref|ZP_08086666.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
 gi|322122733|gb|EFX94442.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
          Length = 246

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSASADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +D ++   S     +   LSS S    E  +  +   L++G EG+G+ P+    A  + H
Sbjct: 164 SDFIRLARSSSLPILASTLSSTSIDYREV-VSKESFVLVMGNEGQGISPEMTVAADILVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 ISMKGQAESLNVAVAAGILIF 243


>gi|167816366|ref|ZP_02448046.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 91]
          Length = 262

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 9/252 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    + E   L G H  SA L+   +    ++ T  ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCVV-TDGALAHEEAR 65

Query: 85  ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142
             +    P + V  P  +   +       GL L  A P  +P L A R +   +VLD V 
Sbjct: 66  GIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGTSVVLDGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A   + +      + + S+ + +SA GA  H   + I    DA   +
Sbjct: 123 DAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTLI 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + +        +A + G EG G+  + +E AT    +  PG +++
Sbjct: 180 ERLSIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALY 274
           LNV+ AAAV L+
Sbjct: 240 LNVAAAAAVCLF 251


>gi|15966476|ref|NP_386829.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307300487|ref|ZP_07580267.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307318352|ref|ZP_07597787.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15075747|emb|CAC47302.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306896034|gb|EFN26785.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306904653|gb|EFN35237.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 275

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 6/194 (3%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPTLDAVRNSQLLMVLDH 140
           A  P   PV     +  D I G   +H+G LAL   + AP     +  +  S L++    
Sbjct: 75  AQFPPDVPVYVAASRVFDAIAGFN-MHRGVLALGRRDAAPGRDALIAGLPQSSLVLAACG 133

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +++  N+G++ R+A AF  D ++              + + G++  +P+ R     + ++
Sbjct: 134 ISNHDNMGSLFRNAAAFGVDAVLMDSTSCDPMYRKAIRVSVGSVLTLPFAREGTAAELIE 193

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++ + GF   GLS      +       + AL++G EG+GL P+T  +    A +     +
Sbjct: 194 RLQTAGFVVWGLSPRGTADINAIPPAPRTALLVGTEGEGL-PETILSQIRTARIRQRPGL 252

Query: 261 KALNVSNAAAVALY 274
            +LNV+ AA +AL+
Sbjct: 253 DSLNVAMAAGIALH 266


>gi|298346967|ref|YP_003719654.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|315656580|ref|ZP_07909467.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298237028|gb|ADI68160.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|315492535|gb|EFU82139.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 275

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P++       L ++L    DP N+G ++R A A     +   +  + + S  + +++ G+
Sbjct: 113 PSVTGSPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSK-KPLEQEI-KNDKIALILGAEGKG 239
           + H+P  R  +L   ++ + S G+  +G  LS D    P+      N K+A ++G E  G
Sbjct: 173 VFHVPTPRFQDLAAVVKALRSEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHG 232

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L    +     +  + M G  ++LNV++AA + L+++
Sbjct: 233 LDATEESWCDVLVSIPMFGRAESLNVTSAATLCLWMS 269


>gi|313683406|ref|YP_004061144.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM
           16994]
 gi|313156266|gb|ADR34944.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM
           16994]
          Length = 250

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ LD +N+P N+G I+RSA A   DGI+  +R S   S ++ K+++G L  IP     +
Sbjct: 112 LLALDGINNPQNLGMIVRSAAASKIDGIVLPRRNSTKLSPLVMKASAGTLFKIPIYYCED 171

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L++ L    +     I LSS +K  +       +   +LG E +G+       +T    +
Sbjct: 172 LSEILGIKDT---AIITLSSHAKDDIHTLKIPSRAIFVLGNETEGVSDAVMRASTHSVSI 228

Query: 255 HMPGIIKALNVSNAAAVALYI 275
            M   +++LNV+  A +  ++
Sbjct: 229 PMYRGVESLNVAVTAGIVSFL 249


>gi|62390273|ref|YP_225675.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325610|emb|CAF21399.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 282

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V     +P N G ++R + A   D ++          A   +S++G+L HIP  R 
Sbjct: 129 RLVSVPVETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARN 188

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250
           +N+ D L ++ S G Q +  S+D +  L+   E+     A + G E  GL       A  
Sbjct: 189 NNIADVLGQLRSKGLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADH 248

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + + G  ++LN++ AA++ LY
Sbjct: 249 RVRIPIRGRAESLNLATAASICLY 272


>gi|317151947|ref|YP_004119995.1| TrmH family RNA methyltransferase, group 3 [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942198|gb|ADU61249.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 266

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 17/191 (8%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ-----LLMVLDHVNDPH 145
           P ++V  + +D +      HQG+A   A L   P L  +  +      L++ LD V D  
Sbjct: 72  PYRSVSAKDLDFMY--RGNHQGVAARCAALSYVPLLTMLETAPDAPLPLIIALDQVQDTG 129

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G + R+  A    G+I  +       A   +S++GAL  +P  +  NL  AL+   ++
Sbjct: 130 NVGVLARTLYALGGAGLIVCQHQGAYLGAGAVRSSAGALNKLPVAKAGNLAAALKDCANY 189

Query: 206 GF-----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +     QT      S    E E+K   + L+LG E KG+RP   +       +      
Sbjct: 190 DYTLYYAQT---GEGSLNAYEAELKTPAV-LVLGNEEKGVRPGVAKLCHHSLSIPFRREF 245

Query: 261 KALNVSNAAAV 271
            +LNV+ A AV
Sbjct: 246 DSLNVAQAGAV 256


>gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
           27560]
 gi|149734771|gb|EDM50688.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
           27560]
          Length = 255

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 24/187 (12%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILR 152
           TV PQ I  +V +++      +E            RN +   ++VLD + DP N+G I+R
Sbjct: 82  TVTPQGIVAVVKQKSYSIDYIIEK-----------RNKEKSCIVVLDRLQDPGNMGTIVR 130

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  A    GII +K  +   +  + +S  G++  +P+  + +L  A+  +   G  T   
Sbjct: 131 TGEAAGISGIIMSKDSADIYNPKVIRSTMGSIFRVPFAIVDDLAAAVDTLKDNGITTYAA 190

Query: 213 SSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                  L+ E+ N        AL++G E +GL  +    A  +  + M G +++LN + 
Sbjct: 191 H------LKGELYNSGSLTKDCALLIGNEARGLSEEISAKADKLIKIPMHGKVESLNAAI 244

Query: 268 AAAVALY 274
           A A+ +Y
Sbjct: 245 ATAILMY 251


>gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum
 gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 257

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 26/168 (15%)

Query: 123 SPTLDAVRNSQLL-------MVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSE 172
           SP L  V+  Q +       ++LD++ DP N+G ILR+  AF+   +I       Y+P  
Sbjct: 96  SPILAVVKIKQEMCDINDNILLLDNIQDPGNLGTILRTCFAFNIKQVIFNNCVDLYNPKT 155

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIAL 231
                K++ GA+  I ++R ++   AL  +    F  I    D       EI    K  L
Sbjct: 156 ----IKASMGAIFKINFLRFNDSKLALNFLLKNKFYLIATILDKNAISLNEITIKQKYCL 211

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIK-----ALNVSNAAAVALY 274
           ++G EG GL        T + H H+  +IK     +LNV+ AAA+ LY
Sbjct: 212 MVGNEGHGL------VQTFIDHAHIKTMIKMNQTESLNVAVAAAIFLY 253


>gi|294634934|ref|ZP_06713452.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291091643|gb|EFE24204.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 267

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 2/141 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L++V +PHN+G I+R+   F   GI+  +  +  ES    ++A G  EH+  I   
Sbjct: 119 CVLALENVANPHNLGGIMRTCAHFGIRGIMAPES-AALESGAAVRTAEGGAEHVQAIDAE 177

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +    L      G+  +  SS      L +     KI L++G EG GL   T        
Sbjct: 178 DFAATLDTFRRAGYTIVTTSSHKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLRQGDLSI 237

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
            +   G +++LNVS A  + L
Sbjct: 238 SIGGTGSVESLNVSVATGIML 258


>gi|254507286|ref|ZP_05119422.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
 gi|219549746|gb|EED26735.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
          Length = 227

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P+E   L+ +++GA   +  
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADAT---GVHKVHAVWPNEMRTLSHTSAGARNWVDV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
               ++ DA+ ++ S G Q +  +        +EI   K  A+ILG+E  G   + ++ A
Sbjct: 73  ETHDSIEDAINELKSQGMQVLVTNLSETAVDFREIDYTKPTAIILGSEKTGASEQAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + M G++++LNVS A+AV LY  Q
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQ 161


>gi|324991298|gb|EGC23231.1| SpoU rRNA methylase [Streptococcus sanguinis SK353]
 gi|325687125|gb|EGD29148.1| SpoU rRNA methylase [Streptococcus sanguinis SK72]
          Length = 246

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 10/144 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  ++  +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISQLSADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTI-----GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            D ++   S     +      +S D +K   +E      ALI+G EG+G+ P+    A  
Sbjct: 164 ADFIRLARSSRLPILVSTLSSISIDYRKVDSKE----SFALIMGNEGQGISPEMTAAADI 219

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           + H+ M G  ++LNV+ AA + ++
Sbjct: 220 LVHISMKGQAESLNVAVAAGILIF 243


>gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125]
 gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125]
          Length = 251

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + +DHV DP N+G ++R+  A     +I ++      ++ + +++ G++ H+P I+  
Sbjct: 108 MFLCIDHVQDPGNVGTMIRTCDAAGMSAVIVSEGSVDIYNSKVVRASQGSIFHLPVIK-G 166

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L   + +    G    G + +            + AL++G EG+G+ P+  + A    +
Sbjct: 167 DLHGWVDQFKEAGIPVFGTALEGGSTYTAIEPQARFALLVGNEGEGVEPELLDKADQNLY 226

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G  ++LNV+ A  + LY
Sbjct: 227 IPLYGKAESLNVAVATGILLY 247


>gi|332296699|ref|YP_004438621.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332179802|gb|AEE15490.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 250

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 19/198 (9%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSP-----TLDAVRNSQLLMVLDHVNDP 144
            P   V    ++K+ G    HQG+ A+   P + P     T D VR  +  ++LD V + 
Sbjct: 53  IPYNKVETLDLEKLCGS-VHHQGVVAMIAQPEIEPLTVEITADWVRGGESAVLLDRVGNA 111

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           +N+GAI+RSA  F    I+       ++S+V   S   A   + Y+R+ ++  A++ +  
Sbjct: 112 NNLGAIVRSAAFFGIRNIVIP--LDEAQSSVTTSSYRVAQGGMEYVRVYSVRSAVRLLQD 169

Query: 205 WGFQTIGLSSDSK--KPLEQ--EIKNDKIAL-ILGAEGKGLRPKTQETATSMAHLHMPGI 259
              + +   +D +   P+     ++  K AL +LG E  G+ P  +E    +  + +P +
Sbjct: 170 MSGKMVRFGTDVRGAAPVSNMARLRAGKAALVVLGNEEAGISPLIRENCDHL--IIIPAV 227

Query: 260 ---IKALNVSNAAAVALY 274
              +++LNV+ AA++ LY
Sbjct: 228 NAAVESLNVAQAASIILY 245


>gi|307702986|ref|ZP_07639933.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|307623379|gb|EFO02369.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
          Length = 212

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---I 192
           + L+ V DP N+G ++R+A A    G+I + + +   S    +S  G+  H+P  R   +
Sbjct: 71  LFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPLV 130

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSM 251
           S + +A  K  +       LS DSK   E   ++N    L++G EG+G+     E+A  +
Sbjct: 131 SFVEEA--KKSNLPILATTLSRDSKDYRELSSLEN--FVLVMGNEGQGISSVMAESADQL 186

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            H+ M G  ++LNV+ AA + ++
Sbjct: 187 VHIGMKGRAESLNVAVAAGILMF 209


>gi|282890121|ref|ZP_06298652.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499972|gb|EFB42260.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 277

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +N+  L+V + +  P N+G ILR + A   D +I     +   +  + +++ G L  +P 
Sbjct: 124 QNNPFLIVAEAIEKPGNLGTILRCSDAVGLDALIVCDACTDIHNPNVVRASVGTLFTVPV 183

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  S   + LQ +   G   +  +  +K+ L        +A+ +G E  GL P+  E A 
Sbjct: 184 IE-SQGAETLQWLKQKGISILAATPHAKQELADIDLTGPLAIAVGTEQLGLSPQWMEQAD 242

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M GI  +LNV+ A  + LY
Sbjct: 243 IQVRIPMYGIADSLNVAMATTILLY 267


>gi|212534794|ref|XP_002147553.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
           18224]
 gi|210069952|gb|EEA24042.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
           18224]
          Length = 506

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 125/317 (39%), Gaps = 89/317 (28%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLA---------------TKNALAR-------- 80
           + P + F+YG+  V AAL    RK++ L                  K ALAR        
Sbjct: 156 TTPASEFIYGLSAVEAALRCTRRKLYMLYIYQAAGEELSPERIALRKLALARGIHVKMAF 215

Query: 81  LDWD-------ANLPH--------PFP------VKTVPPQT-------IDKIVGKEAVHQ 112
             WD          PH        P P      +++VP  T       +DK   +EA   
Sbjct: 216 AGWDRIMDKMSTGRPHNGLILEASPMPQVPVTSLQSVPSPTDEYFDVGLDKQSVEEAEVN 275

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G +   A +      A     L+++LD + DP N+GA++RSA     D ++ T R S   
Sbjct: 276 GSSNRIARVERFEEVAKSRYPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPL 335

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKM--HSWGF---------------------QT 209
           + V  K+++GA E++  ++ +N  D +++   + W F                      T
Sbjct: 336 TPVTIKASAGAAENMTILKANNEVDFIRRSRENGWRFYAADSPENVADLAATHGTLADDT 395

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---------- 259
             ++S++       +      L+LG EG GL P+ +  A     + +PG           
Sbjct: 396 TSIASNNTNQSANLLTTAPTVLMLGNEGTGLLPRIKAQADGF--VSIPGARIRPDMGIND 453

Query: 260 ---IKALNVSNAAAVAL 273
              + +LNVS AAA+ +
Sbjct: 454 AARVDSLNVSVAAALLM 470


>gi|291166497|gb|EFE28543.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896]
          Length = 266

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 6/146 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +    +++LD + DP N G I+R+++A+  D I  TK    S S  + +++ G    +P 
Sbjct: 116 KEKSFILLLDQIQDPGNFGTIIRTSLAYGIDAIFFTKGSVDSFSPKVTRASMGGNLCLPL 175

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET 247
           I   +  D  +K       T+  +S S+K +     N   K+ALILG EG G+      T
Sbjct: 176 IEAEDGIDYFKKFR----YTVYSASLSEKSVSYRDVNFESKVALILGNEGNGISADILNT 231

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           +     + +   +++LNV  AA + +
Sbjct: 232 SDYQIIIPIKEGMESLNVGVAAGILI 257


>gi|323526473|ref|YP_004228626.1| tRNA/rRNA methyltransferase SpoU [Burkholderia sp. CCGE1001]
 gi|323383475|gb|ADX55566.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1001]
          Length = 262

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 15/255 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +  +  L G H  SA L+   R     + T+ ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGRPDM-CIVTEGALAHDEAQ 65

Query: 85  ANLP--HPFPVKTVPPQTIDKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLD 139
           A +       + T+P    D + G+    VH  G+ L    L +P  D V  +   +VLD
Sbjct: 66  AIVSRIEDHLIVTLP----DALFGQLSNVVHGVGMLLLVEKLSAPLPDTVEET--CIVLD 119

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V D  N+G+ILRSA A     +      + + S+ + +S  GA  H   ++I    DA 
Sbjct: 120 GVQDAGNVGSILRSAAAAGIQRVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVDAA 176

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +       +   S   + +++   + ++A + G EG G+    ++  +    +  PG 
Sbjct: 177 ALIGRLAVPIVITDSHGAEAIDECDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQPGG 236

Query: 260 IKALNVSNAAAVALY 274
           +++LNV+ AAAV ++
Sbjct: 237 MESLNVAAAAAVCMF 251


>gi|229495405|ref|ZP_04389140.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
           35406]
 gi|229317848|gb|EEN83746.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
           35406]
          Length = 261

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 16/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G+ILR+A  F C  + TT+  +   S  + ++  GAL     ++++ +
Sbjct: 112 LLLDNVQDPGNVGSILRTADWFGCRSVFTTEGTADPFSPKVVQATMGALAR---VKVTPI 168

Query: 196 TDA--LQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQETATS 250
           TD   L + H  G   +G   + +  L      + +    LI+G EG+G+ P   +  T 
Sbjct: 169 TDVHTLGQAHRDGVAILGTFLEGEDILAHHSTPLFSSPYLLIMGNEGQGISPTVAQYVTQ 228

Query: 251 MAHLHMPGI------IKALNVSNAAAVALYITQNH 279
              L +P        +++LNV+ A A+ L     H
Sbjct: 229 --RLTIPSSSPDGKQVESLNVAAATAIVLACLHRH 261


>gi|156093651|ref|XP_001612864.1| rRNA methylase [Plasmodium vivax SaI-1]
 gi|148801738|gb|EDL43137.1| rRNA methylase, putative [Plasmodium vivax]
          Length = 314

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 116/285 (40%), Gaps = 55/285 (19%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---------TKNALARLDWDANLPHPFPVKTVPPQT 100
           ++YG+++VS+ L    R I  +L          T+    R  +D       P++T   + 
Sbjct: 32  YVYGINSVSSVLVKNERTIHSVLVNQHIRLNKKTRKQAYRYIFDTLKERGIPIRTTSKRK 91

Query: 101 IDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +D +VG    H  + ++T+          L       +   + + L  V D  NIG I R
Sbjct: 92  MDDLVGGFP-HNDIIMQTSYRTMKRAKHFLKDYPQKGKQKSIYICLHDVYDNMNIGNICR 150

Query: 153 SAVAFSCDGIITTKRYSPS-----------ESAVLAKSASGALEHIPYIRISNLTDALQK 201
           S   F  D I   K+               ++ VL  S+ G  E + +  ++++   +  
Sbjct: 151 SIFFFGGDSIFLKKKKKKKKLQEKLLQMKIDTPVL-HSSVGTSEFLDFFHVNDMLSFMDD 209

Query: 202 MHSWGFQTIG----LSSDSKKPLEQEI------KNDKIALILGAEGKGLRPK-------- 243
           + S GF+ +     L + S     QE+      KN+K  +ILG E KGL  +        
Sbjct: 210 LKSCGFKILSTCCRLDNSSTNDRLQELANVRLSKNEKAFIILGNETKGLSKEILDRSDAC 269

Query: 244 -------TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  T+E +T   + +    + +LNV+NA A+ L+   +H A
Sbjct: 270 IYISGHHTEEASTPALNSNGNFTLDSLNVNNACAILLHHFASHLA 314


>gi|110634557|ref|YP_674765.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110285541|gb|ABG63600.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 266

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ L  + +  N+GAI R+A AF  D I+              + + GA+  +P+ R  
Sbjct: 123 LVVALSGIANHDNMGAIFRNAAAFGADAILLDSHCCDPLYRKAIRVSVGAVLKVPFARGG 182

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + +  ++ + + GF  + LS   ++ +E   +  + A++LGAEG GL P           
Sbjct: 183 DASTLIETLTARGFDILALSPSGEREIETVKRAPRTAVLLGAEGPGL-PAALLARLPSVR 241

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M     +LNV+ A A+AL+
Sbjct: 242 IPMRNDFDSLNVAAATAIALH 262


>gi|298384290|ref|ZP_06993850.1| rRNA methylase [Bacteroides sp. 1_1_14]
 gi|298262569|gb|EFI05433.1| rRNA methylase [Bacteroides sp. 1_1_14]
          Length = 266

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 6/176 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + +  + G       L     P++    +  R ++ ++V+D V D  NIGAI 
Sbjct: 79  PVYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIF 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++ T+      +    + + G +  +P+   + +  +L  +   GF+T  
Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPW---TWMDGSLSDLGKLGFRTAA 195

Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++ +D+   ++  +     ++A+++G EG GL P+T   A  +  + M   + +LN
Sbjct: 196 MALTDNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLN 251


>gi|254480449|ref|ZP_05093696.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
 gi|214039032|gb|EEB79692.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
          Length = 261

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 119/263 (45%), Gaps = 24/263 (9%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKN---ALAR 80
           ++  DY + ++F ++         L +YG      AL +P  +   L L++ N    +  
Sbjct: 2   QDSEDYTQKKAFFERV--------LTVYGRKPALEALRDPLLQCHALHLSSSNRGGGIIT 53

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--------- 131
              DA      PV     + + +I       QG+AL+   +L P+  +++          
Sbjct: 54  ELLDAAAKKSIPVHEHSREALARISKNGKQDQGVALD---ILCPSFRSLQTYVEELPGLA 110

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            Q ++ LD + +P N+G ILRSA A   D ++ + + + +   ++ K+++G L   P + 
Sbjct: 111 PQRVLALDGITNPQNLGMILRSAAAGHIDAVLWSSKGNAALGPLVIKASAGTLYRAPLVM 170

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  +AL+++     +   L +++ + L +      +A +LG E +G+     + A   
Sbjct: 171 CDSQVNALRRLAQQEVEICSLEANASQTLFEFTPKKHVAYVLGNETEGVSKDVVQLADKS 230

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M   +++LNV+  A++  +
Sbjct: 231 LSIPMNNGVESLNVAVTASLIAF 253


>gi|253569710|ref|ZP_04847119.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840091|gb|EES68173.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 266

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 6/176 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + +  + G       L     P++    +  R ++ ++V+D V D  NIGAI 
Sbjct: 79  PVYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIF 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++ T+      +    + + G +  +P+   + +  +L  +   GF+T  
Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPW---TWMDGSLSDLGKLGFRTAA 195

Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++ +D+   ++  +     ++A+++G EG GL P+T   A  +  + M   + +LN
Sbjct: 196 MALTDNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLN 251


>gi|150006258|ref|YP_001301002.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
 gi|149934682|gb|ABR41380.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
          Length = 268

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI 
Sbjct: 79  PVYTGDRELLTTLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++ T+      +    + + G++  +P+   + L   +  ++ +GF+T  
Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLNGTIGDLNKFGFRTAA 195

Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++ +D    ++  I     ++A+++G EG GL  KT   A  +  + M   + +LN
Sbjct: 196 MALTDDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLN 251


>gi|255326342|ref|ZP_05367426.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296559|gb|EET75892.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 333

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 35/173 (20%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186
           N +L+ VL  V DP N G ILR A A   D +ITTK     Y+P       +S +G+L H
Sbjct: 156 NPKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKT----VRSTAGSLFH 211

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIA--------------- 230
           +P I+   L D  + + S G  T  L++D    +  QE+     A               
Sbjct: 212 VPIIQGVQLEDFAEDVKSQG--TAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKG 269

Query: 231 ---------LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     + G E +GL  + +  AT    + + G  ++LNV  AAAV LY
Sbjct: 270 NFDLSKPTMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLY 322


>gi|16126553|ref|NP_421117.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221235335|ref|YP_002517772.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|13423835|gb|AAK24285.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220964508|gb|ACL95864.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 268

 Score = 59.3 bits (142), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 8/242 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           K R     E LF+    TV  A   + P R +  L+  K      D  A LP   P+   
Sbjct: 22  KERDLVGREGLFIAEGETVLRAFTRDAPQRVVSLLIDPKRREKLADVFAGLPEFTPIYLA 81

Query: 97  PPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILR 152
               +D I G   +H+G LA+   P      D + +     +++VL  + +  N+G I R
Sbjct: 82  EQGVLDAIAGFH-LHRGILAVGRKPPAVAARDLLASLPARAMVLVLCGIANHDNMGGIYR 140

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  D I+              + + GA+  +P  R+S        + + GF+ + L
Sbjct: 141 NAAAFGADAIVLDADCCDPLYRKAIRVSVGAVLSVPTARLSRDESIADLLDATGFEGLAL 200

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S  + + L       + A++LG EG GL P     A  +  + M     +LNV+  + + 
Sbjct: 201 SPSADEILATLKPAARTAVLLGTEGPGLSPDVMARARRIG-IPMANSFDSLNVATTSGIV 259

Query: 273 LY 274
           L+
Sbjct: 260 LH 261


>gi|269103907|ref|ZP_06156604.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163805|gb|EEZ42301.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 236

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ P+N+ AI+R+A A     +     +   +  + + +++G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPNNVSAIIRTADAVGVHKVHAV--WQAEQLRLHSHTSAGSRNWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                +N+TDA+  M + G Q +  +   +    +EI   K  A+ILG E  G+ P+   
Sbjct: 72  ELETHANITDAVHAMKAQGMQVLATNLSERAVDFREIDYTKPTAIILGGEKHGITPEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G++++LNVS A+A+ LY  Q
Sbjct: 132 LADQDIIIPMVGMVQSLNVSVASALILYEAQ 162


>gi|119357014|ref|YP_911658.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354363|gb|ABL65234.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 224

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+D+VN  HN+ AI+RS     CD +   + ++ S    +    + A     +
Sbjct: 5   RQPDLSLVMDNVNKAHNLSAIIRS-----CDAVGIHEIHAVSYRKNIFDRQTAAAGTTRW 59

Query: 190 IRIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           + ++   ++T  L  +   G Q +  S  SK    + I   +  ALILGAE  G+  +  
Sbjct: 60  VEVTLHQSITSGLSMIAGRGMQILAASGSSKNVDFRSIDYTRPTALILGAEWDGVSTEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A     + M G+I++LNVS AAAV L+
Sbjct: 120 EAADHHISIPMHGMIESLNVSVAAAVILF 148


>gi|170780648|ref|YP_001708980.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155216|emb|CAQ00317.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 270

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 17/184 (9%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHN 146
            PV T P + + ++ G   +H+G+    A L  P L +V     +++ ++VL+ V DP N
Sbjct: 77  VPVFTGPGELLAELTGY-VLHRGV---VASLDRPALPSVASLLADARRVVVLEDVVDPTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RS  A   D ++ T R +        + + G +  +P+ R     +    +   G
Sbjct: 133 VGAIFRSVGAIGADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTGEWPETRAALADAG 192

Query: 207 FQT--IGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           F    + L+ D+      P E    ++K+ ++LG+EG GL  +   +A ++  + M   I
Sbjct: 193 FHVAALALTPDAVSIRDFPAED---HEKLVIVLGSEGPGLSAEAIRSADTVVQIPMAHGI 249

Query: 261 KALN 264
            +LN
Sbjct: 250 DSLN 253


>gi|189347569|ref|YP_001944098.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
 gi|189341716|gb|ACD91119.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
          Length = 263

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 40/269 (14%)

Query: 20  YAKL-RRNHRDYKKMQSFNQKSRHTSQ-----PEN------LFLYGVHTVSAALNNPSRK 67
           Y KL ++ +RD + +  F +  R  S+     PE       LF  G         + S +
Sbjct: 15  YGKLHQKKYRDSEGL-FFTEGFRTVSELLEALPEPGLLDALLFREGEQAAEGFYGSYSGR 73

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +F L  T+   ARL            +T  P  I  +  +++     AL   P      +
Sbjct: 74  VFTL--TEKECARLS-----------QTATPSGIFGVFRQQS-----ALPFEP------E 109

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               S L++ LD V DP N G ILR+A  F  D +I +   +   +A   +S++G++  +
Sbjct: 110 RTDGSSLIVALDDVQDPGNAGTILRTAAWFGADAMICSAGTADRYNAKAVRSSAGSIYAL 169

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P+  + +L   L ++   G+  I  S   +   E     +K  L++G E  G+    Q  
Sbjct: 170 PHYGVDSLETELLRLAGRGYAVIASSLAGQDFREFTSWPEKQVLVIGNEANGVSRPVQAL 229

Query: 248 ATSMA---HLHMPGIIKALNVSNAAAVAL 273
           A  +    H+     +++LN S +AA+ +
Sbjct: 230 AGRLVRIPHIGSKPRVESLNASVSAAILM 258


>gi|50557128|ref|XP_505972.1| YALI0F27995p [Yarrowia lipolytica]
 gi|49651842|emb|CAG78784.1| YALI0F27995p [Yarrowia lipolytica]
          Length = 608

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 15/127 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L++ LD +ND HN+G+ILRS      D +I T +     S  +AK++SGALE++P 
Sbjct: 438 RRFPLVVYLDQLNDTHNLGSILRSCQFLGADAVIVTAKNCAPLSPAVAKTSSGALEYMPV 497

Query: 190 IRISNL-TDALQKMHSWGFQTI---------GLSSDSKKPLEQE-----IKNDKIALILG 234
              S       QK  + G+  +            S + KPL        + N    L+LG
Sbjct: 498 FENSKTPAHFFQKCKNNGWNIVCAAVPTASGAAKSKADKPLSLRQCGSWLDNKPTVLVLG 557

Query: 235 AEGKGLR 241
            E  G+R
Sbjct: 558 GEHGGVR 564


>gi|323497036|ref|ZP_08102059.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
           21326]
 gi|323317880|gb|EGA70868.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
           21326]
          Length = 227

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    GI       P+E   L+ +++GA   +  
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADAT---GIHKIHAVWPNEMRTLSHTSAGARNWVDV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++ +A+ ++ S G Q +  + SDS     Q       A+ILG+E  G   + ++ A
Sbjct: 73  ETHDSIEEAISELKSQGMQVLVTNLSDSAVDFRQIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 133 DQDIIVPMVGMVQSLNVSVASAVILYEAQRQ 163


>gi|302550200|ref|ZP_07302542.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302467818|gb|EFL30911.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 271

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 16/184 (8%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHN 146
           P PV  V P+  +++ G   VH+G   +++  PL  PT  D +R ++ +++++ VND  N
Sbjct: 76  PAPVYAVSPELAERVTGYH-VHRGALASMQRKPL--PTAADLLRRTRRVVIMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R     D+  ++ S  
Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYAR----PDSWPRVWSRS 188

Query: 207 FQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +    SS   +  +   +       D++AL+LGAEG  L  +    A     + M   +
Sbjct: 189 ARPASRSSPDPRREDPPPRRGRPHTMDRVALMLGAEGDALSTQALVAADEWVRIPMSHGV 248

Query: 261 KALN 264
            +LN
Sbjct: 249 DSLN 252


>gi|309357472|emb|CAP35827.2| hypothetical protein CBG_18354 [Caenorhabditis briggsae AF16]
          Length = 645

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 21/207 (10%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--------KTVPPQTID 102
           L+G+H+V  A+ +  R+   +   K    R + D  +              + +    +D
Sbjct: 45  LFGLHSVLEAMRSGKREFHSVYLKKTLEKRAESDDRIKEVLEKIKNMGIRKELLTDDQLD 104

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           ++  +  +H G+ ++ + L      + +   + + +D V DP N+GAI RSA  F  DG+
Sbjct: 105 RLT-EYQLHNGICMDASAL---KFSSFQPKNVSIFVDKVLDPGNLGAIGRSAWFFGADGV 160

Query: 163 ITTKRYSP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD------ 215
              K   P S +  + KS+ GALEH+P  +     +   ++ S G + +           
Sbjct: 161 GLVKGRGPKSVTPSMIKSSCGALEHLPVQQFEGFHEFRDQIKSNGGEIVATCDPLAAKKA 220

Query: 216 --SKKPLEQEIKNDKIALILGAEGKGL 240
             + K L+Q   +  + ++LG EG G+
Sbjct: 221 GITAKSLDQWKPHKTVGIVLGDEGVGI 247


>gi|312127730|ref|YP_003992604.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777749|gb|ADQ07235.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 270

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/276 (19%), Positives = 120/276 (43%), Gaps = 18/276 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDY--KKMQSFNQKSRHTSQPENLFLYGVHTVS 58
           +  IS +++E I  LK  H  K R   R +  + ++   +   +  +  NL ++  H   
Sbjct: 6   VEFISSRENECIKRLKKLHDKKYREEFRSFITEGLKLVREAIDYQIECINLVIFSQH--- 62

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                 ++  +Q    +    RL  D  +     V    P  + + +   +  QG+ L  
Sbjct: 63  ------AKDRYQEFYWE--CKRLLEDGKIERVIEV----PDKLFEYITTTSTPQGI-LAE 109

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              +   ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK      +    +
Sbjct: 110 CNFVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNPKTIR 169

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  G+L H+  +R +     ++ +    F     +      + + + + +  +++G E +
Sbjct: 170 ATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCVVIGNESE 229

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+     + AT    + M G  ++LN + AA++ LY
Sbjct: 230 GVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLY 265


>gi|237711324|ref|ZP_04541805.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229454019|gb|EEO59740.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 178

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA   + +    
Sbjct: 25  LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYKK 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  DA+Q++H  GF  + +       L  +++ D   K A+++G E KG++ +       
Sbjct: 85  NTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS    + ++   N   K
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176


>gi|23308848|ref|NP_600607.2| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|21324156|dbj|BAB98781.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
          Length = 198

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V     +P N G ++R + A   D ++          A   +S++G+L HIP  R 
Sbjct: 45  RLVSVPVETREPGNAGTLIRVSDAVGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARN 104

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250
           +N+ D L ++ S G Q +  S+D +  L+   E+     A + G E  GL       A  
Sbjct: 105 NNIADVLGQLRSKGLQILATSADGEVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADH 164

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + + G  ++LN++ AA++ LY
Sbjct: 165 RVRIPIRGRAESLNLATAASICLY 188


>gi|260903735|ref|ZP_05912057.1| rRNA methylase [Brevibacterium linens BL2]
          Length = 147

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 15/142 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RSA AF  D ++ T R +        + + G +  +P+ RI +    +  +   
Sbjct: 11  NVGAIFRSAAAFGVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIESWPAGVDSLREL 70

Query: 206 GFQTIGLSSDSKKPLEQE---IKN------DKIALILGAEGKGLRPKTQETATSMAHLHM 256
           GF    L+      LEQ+   I++      ++ A++ G EG GLR  T     S   + M
Sbjct: 71  GFHVAALA------LEQDSVAIRDFAANAPERTAIVFGTEGDGLRRSTIAACDSTVMIPM 124

Query: 257 PGIIKALNVSNAAAVALYITQN 278
            G + +LNV+ A+AVA +  QN
Sbjct: 125 SGGVDSLNVAAASAVACFALQN 146


>gi|85858093|ref|YP_460295.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721184|gb|ABC76127.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
          Length = 272

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 76/140 (54%), Gaps = 3/140 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++L  +N+P N+G ++R+A+ F   G++ ++      +  + ++A G++ H+P++  ++
Sbjct: 123 LLLLHEINNPGNLGTLVRTALWFGFAGVVLSQGSVDPLNPKVIRAAMGSIFHVPFLFGAD 182

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L+  L ++    F  +G SS     L      +K AL+LG+E  GL     +      H+
Sbjct: 183 LSKVLPRVKE-NFHVVG-SSVRTGTLPHAC-GEKTALLLGSESHGLPETLLKLTDEQWHI 239

Query: 255 HMPGIIKALNVSNAAAVALY 274
              G+ ++L++  AAA+ +Y
Sbjct: 240 PRRGVGESLSLPQAAAILMY 259


>gi|330469058|ref|YP_004406801.1| tRNA/rRNA methyltransferase SpoU [Verrucosispora maris AB-18-032]
 gi|328812029|gb|AEB46201.1| tRNA/rRNA methyltransferase (SpoU) [Verrucosispora maris AB-18-032]
          Length = 267

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 124/287 (43%), Gaps = 41/287 (14%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSA 59
           M LI++   E+I                DY+ +     ++R    P  LF+  G   +  
Sbjct: 1   MELITEPDDERIA---------------DYRALTDVELRTRW-EPPHGLFIAEGELVLRR 44

Query: 60  AL--NNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-- 114
           AL    P+R         + LA LD  DA      PV    P  + +  G   VH+G+  
Sbjct: 45  ALRAGYPARSYLVDAKRVDQLADLDTGDA------PVYAATPDVLQEATGFH-VHRGVLA 97

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           +    PL S   + +  ++  ++L+ VN+  N+GAI R+  A   D ++     SPS + 
Sbjct: 98  SFRRKPLPS-AAEVLATARRTVILEDVNNHTNLGAIFRAVAALGVDAVL----LSPSCAD 152

Query: 175 VL----AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKND 227
            L     + + G +  +PY ++     AL ++   GF  + ++ +    P+++    +  
Sbjct: 153 PLYRRSVRVSMGEVFAVPYAKLDPWPTALAQVRDAGFTVLAMTPAPDAVPIQRLTPAQRA 212

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + AL+LGAEG GL       +     + M   + +LNV+ A AVA +
Sbjct: 213 RAALLLGAEGAGLTQAAMAASDVRVVIPMRRGVDSLNVAAATAVACW 259


>gi|303282009|ref|XP_003060296.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457767|gb|EEH55065.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 463

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + LD V DP N+GA+LRSA      G++   + S   S V++K+++GALE +    + 
Sbjct: 299 VWLALDEVVDPQNLGAVLRSAKFLGVAGVVVCAKNSAPLSPVVSKASAGALESMDVRSVG 358

Query: 194 NLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +   L +    G+   G +++  +    + + +     L++G EG GLR   +   TSM
Sbjct: 359 VMHRFLMRCVEDGWDVYGTAAEEGAADVADVDARGRPSVLVMGNEGAGLRTNVRRACTSM 418


>gi|317485211|ref|ZP_07944092.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923502|gb|EFV44707.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 286

 Score = 58.9 bits (141), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 107/256 (41%), Gaps = 20/256 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +++  S    S   S+ E   L GV  V   L     +I  +L  K   ++ D D  L  
Sbjct: 20  FEQDASLENASCSDSKEEQAVLSGVKPVLELLEREPERIDAVLVRKGKRSQ-DTDRILDL 78

Query: 90  PFPVKT----VPPQTIDKIVGKEAVHQGLA--------LETAPLLSPTLDAVRNSQLLMV 137
               K        Q++D++    A HQG+          E A LL+   DA     L++V
Sbjct: 79  CRTAKVRFTLADAQSLDRLC--PAGHQGVVARLFEAGFTEFADLLTDATDA--PLPLILV 134

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DP N G + R+  A    G++  +       A   ++A+GALE +P  ++ N+  
Sbjct: 135 LDQVQDPGNAGTLARTLYAMGGAGLVIPRHNGTFLGAGARRAAAGALERLPVAKVMNIAR 194

Query: 198 ALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           AL +    GF   G      S       +    + L+LG E  G+RP+  +    + H+ 
Sbjct: 195 ALDEARDAGFLIYGAAFGEGSLDAFTTRLHTPAL-LVLGNEEHGIRPQVAKRCHHLLHIP 253

Query: 256 MPGIIKALNVSNAAAV 271
           M     +LNV+ A  +
Sbjct: 254 MLRTFDSLNVAQAGGI 269


>gi|315225471|ref|ZP_07867284.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314944569|gb|EFS96605.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 283

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSA 180
           TL    +S LL+V +    P NIGA+LR+A A + D +I     T  Y+P+    + +S+
Sbjct: 125 TLAFATDSPLLLVAEAPEKPGNIGALLRTADAANIDAVIIANPKTDLYNPN----IIRSS 180

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G +  +P I   + T+ +  + + G  +   +  + KP  +       A+++G E +GL
Sbjct: 181 VGCVFTVP-IATGSTTEVIDFLKAKGINSYCAALTASKPYYEVSFKKASAIVVGTEDQGL 239

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +    +T    + M GII ++NVS AAAV ++
Sbjct: 240 TEEWLTHSTQNIIIPMEGIIDSMNVSVAAAVLIF 273


>gi|299143999|ref|ZP_07037079.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518484|gb|EFI42223.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 260

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRIS 193
           LD + DP N+G ++RSA AFS DGII +K     Y+P     L +S   ++  +  + I 
Sbjct: 121 LDDLQDPGNVGGLIRSADAFSLDGIILSKNTVELYNPK----LIRSTMASVFRVK-LYIV 175

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              + + K+   GF+ I  S ++ K   +   ++   +  G E KG+  +    +    +
Sbjct: 176 ESKNEILKLKEKGFKIISTSVENAKASYEYKFSENSVITFGNEAKGVSDEVFSYSDEKIY 235

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M   I +LNV+ AA++  Y
Sbjct: 236 IPMSEEINSLNVNVAASILFY 256


>gi|323490473|ref|ZP_08095680.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
           MPA1U2]
 gi|323395877|gb|EGA88716.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
           MPA1U2]
          Length = 255

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 30/261 (11%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           H+ KL    ++  K   F              + G H    AL    + + + L  +  +
Sbjct: 14  HWKKLSTTRKERDKFAEF-------------LVEGFHLTEEALRK--KDLVKSLIVREGV 58

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH----QGLALETA-PLLSPTLDAVRNSQ 133
                  ++P  + ++ V   ++   V KE       QG+    A P    T D  ++  
Sbjct: 59  -------DIPEGWDIEGVAHYSVTATVAKEISETEHTQGIFAHCAQPEF--TEDEQKSWT 109

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+++D V DP NIG ++R+A A   D +I  K  +   +    +SA G+   I  ++  
Sbjct: 110 KLLMIDAVQDPGNIGTMIRTASASGIDAVILGKGCADPYNPKTVRSAQGSHFQISIVK-G 168

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L +  ++  + G    G +  +  P+ +    ++ ALI+G EG G+ P   +       
Sbjct: 169 ELMEWTEQTKASGIPIFGTALQNSTPVHEAKTLEQFALIVGNEGSGVDPVLLQQTDQNLM 228

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G  ++LNV+ A  + LY
Sbjct: 229 VPLYGNAESLNVAVATGILLY 249


>gi|15828775|ref|NP_326135.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089718|emb|CAC13477.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 250

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 46/285 (16%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +IS K++EKI  LK     K R         Q FN+            + G H +  AL 
Sbjct: 4   VISSKENEKIKHLKKLQNKKYR---------QKFNE----------FLIEGDHLIDEALK 44

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           N      Q+ +TK          N  H F +     + +  +V  E   Q +A       
Sbjct: 45  NNFE--CQIYSTK---------PNEKHDFLITKEVLKHVSLLVNSE---QKIAKVKIKET 90

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSA 180
           S     +     ++ L+++ DP NIG +LRSA++F+   II      Y+P     + +++
Sbjct: 91  SNDFLNIDQKSNILFLNNLQDPTNIGTLLRSALSFNFKNIIYDNLDIYNPK----IIRAS 146

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGK 238
            GA+  + + +  N    L+ +    ++ IG  L SDS   L Q   + KI LILG EG 
Sbjct: 147 QGAIFALNFFKSKNHQKTLKYLQEKNYEIIGTFLHSDSTN-LYQNSFDKKIVLILGNEGL 205

Query: 239 GLRPKTQETATSM-AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+    +E  T +  ++ +P   ++LNV+ A ++ +   +N  +K
Sbjct: 206 GIE---KEILTLIDKNVIVPINFESLNVAIAGSIIMSYVENKGSK 247


>gi|312199666|ref|YP_004019727.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
 gi|311231002|gb|ADP83857.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
          Length = 281

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 14/244 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLD-WDAN 86
           DY  +     + R     E LF+  G   +  AL    R    +L + N   RLD   A 
Sbjct: 31  DYVALTDVVLRRRKEPA-EGLFIAEGERVIQRALRAGYRA-RSVLVSPN---RLDAVPAE 85

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           L    PV    P+ + KI G E VH+G   A+   P   P  + +  +  ++VL+ +   
Sbjct: 86  LGPEVPVYLAGPELMAKITGFE-VHRGALAAMARHPARDPA-ELLSWALRVLVLEDLVSH 143

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA+ RSA     D I+ + R +        + + G +  +PY R+     AL  +  
Sbjct: 144 TNLGAVFRSAAGLGMDAILLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPAALDTLAD 203

Query: 205 WGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF+T+ L+  +        + + + ++A++LG EG+GL    Q  AT    + M   + 
Sbjct: 204 RGFETLALTPAADAADLATLRPVADARLAVLLGTEGEGLSAAAQAAATRRVRIPMAAGVD 263

Query: 262 ALNV 265
           +LNV
Sbjct: 264 SLNV 267


>gi|308497766|ref|XP_003111070.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
 gi|308242950|gb|EFO86902.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
          Length = 698

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 32/244 (13%)

Query: 51  LYGVHTVSAALNNPSR---KIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIV 105
           L+G+H V  A+ +  R    I+   A +++  R+     +     +K  ++    +D++ 
Sbjct: 46  LFGLHAVLEAIRSGKRDFHSIYLKKAIEDSDTRIREILQIIQELGIKKESLTDDQLDRLT 105

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +  +H G+ ++ +PL              + +D V DP N+GAI RSA  F  DGI   
Sbjct: 106 -EYQLHNGICMDASPL---NFSNFETKNFSIFVDRVLDPGNLGAIGRSAWYFGADGICLV 161

Query: 166 KRYSPSE-SAVLAKSASGALEHIPYIRISN---LTDALQKMHSWGF---------QTIGL 212
           K   P   +  + KS+ GALEH+P  +  N     D++ K++S            +  G+
Sbjct: 162 KGRGPKTITPSMIKSSCGALEHLPVQQFENFHEFRDSI-KLNSGELVATCDPLAAEKAGI 220

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT---QETATSMA--HLHMPGIIKALNVSN 267
           +    K L +      + ++LG EG G+  +     +T  S+A    H   +  +LNVS 
Sbjct: 221 TV---KSLNEWKPKKTVGIVLGDEGVGISKEILNFCDTVISIAPTREHQSSVT-SLNVSV 276

Query: 268 AAAV 271
            AAV
Sbjct: 277 VAAV 280


>gi|86133500|ref|ZP_01052082.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820363|gb|EAQ41510.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 229

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 3/149 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEH 186
           A R     +VL+ +  PHN  A++R+   F    + +   RY    S  + K A   +  
Sbjct: 31  AERTRHFTVVLEDIYQPHNASAVVRTCDIFGVQDLHVIENRYINRVSKYVTKGAQKWITT 90

Query: 187 IPY-IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKT 244
             Y     N    L  + + G+Q I  S  +   L Q+ K DK  A + GAE  G+    
Sbjct: 91  KRYKTDGDNTKTCLNHLKTAGYQIIATSPHADANLLQDFKIDKKTAFVFGAEATGISDTV 150

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +E A     + M G  ++ N+S AAA+ L
Sbjct: 151 KEHADGFLKIPMVGFTESFNISVAAAIIL 179


>gi|329955404|ref|ZP_08296312.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328525807|gb|EGF52831.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 270

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  R ++ ++V+D V D  NIGAI RSA A   D ++ T       +    + + G++  
Sbjct: 114 EICREARRIVVIDGVVDATNIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFL 173

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDS---KKPLEQEIKNDKIALILGAEGKGLR 241
           +P+   + L   L K+H  GF+T  + L+ DS     PL       K+A+I+G EG GL 
Sbjct: 174 VPW---TWLDTTLSKLHDLGFRTAAMALTDDSISIDNPLLA--TEPKLAIIMGTEGDGLS 228

Query: 242 PKTQETATSMAHLHMPGIIKALN 264
            +T   A  +  + M   + +LN
Sbjct: 229 YETIAEADYVVRIPMSHDVDSLN 251


>gi|323494590|ref|ZP_08099694.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323311193|gb|EGA64353.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 227

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    GI       P+E   L+ +++GA   +  
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADAT---GIHKIHAVWPNEMRTLSHTSAGARNWVDV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++ +A+ ++ S G Q +  + SD+     +       A+ILG+E  G   K ++ A
Sbjct: 73  ETHDSIEEAITELKSQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163


>gi|254821223|ref|ZP_05226224.1| TsnR protein [Mycobacterium intracellulare ATCC 13950]
          Length = 268

 Score = 58.9 bits (141), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           TV P  +  +    A H    L  AP            QLL V   + +P N G ++R A
Sbjct: 87  TVTPAGLVAVCDMPATHLDDVLAGAP------------QLLAVAVEIGEPGNAGTLIRLA 134

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G+I   R     +    ++++G++  +P +   +   A+  + + G Q +  + 
Sbjct: 135 DAMGAAGVILGGRSVDPYNGKCLRASAGSIFCVPVVVAPDALAAVDAVRAAGLQALATTV 194

Query: 215 DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           D ++ L++  E+     A + G E  GL  +    A     + M G  ++LNV++AAA+ 
Sbjct: 195 DGERRLDEAGELLGRPTAWLFGPESHGLPSEIASAADHRLRIPMSGGAESLNVASAAAIC 254

Query: 273 LY 274
           LY
Sbjct: 255 LY 256


>gi|46447426|ref|YP_008791.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401067|emb|CAF24516.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 265

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +V + +  P N+G ILRS+ A   DG+I   R +   +  + +++ G L  +P +   
Sbjct: 116 FFVVAEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLFTVPTVEAR 175

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              D L  ++  G   +  +  ++K   Q      +A+ +G E  GL  +  + AT    
Sbjct: 176 G-EDILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVR 234

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G+  +LNV+ A  + LY
Sbjct: 235 IPMMGVADSLNVAMATTLLLY 255


>gi|148272114|ref|YP_001221675.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830044|emb|CAN00973.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 266

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 13/182 (7%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHN 146
            PV T P + + ++ G   +H+G+    A L  P L  V     +++ ++VL+ V DP N
Sbjct: 77  VPVFTGPGELLAELTGY-VLHRGV---VASLDRPALPTVASLLADARRVVVLEDVVDPTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RS  A   D ++ T R +        + + G +  +P+ R     +    +   G
Sbjct: 133 VGAIFRSVGAIGADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTGEWPETRAALADAG 192

Query: 207 FQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           F    L+    + S +    E ++ ++A++LG+EG GL  +   +A ++  + M   I +
Sbjct: 193 FHVAALALTPDAVSIRDFRAE-EHARLAIVLGSEGPGLSAEAISSADTVVRIPMAHGIDS 251

Query: 263 LN 264
           LN
Sbjct: 252 LN 253


>gi|260911205|ref|ZP_05917808.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634685|gb|EEX52772.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 267

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N+  + V+D V D  NIGAI RSA A   D ++  K      +    + + GA+  +P+ 
Sbjct: 118 NATRVCVIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGAVFLVPW- 176

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPL-EQEIKND-KIALILGAEGKGLRPKTQET 247
             +     L ++ + GF+T  ++ + +  PL +  +K + ++A+++G EG GL  +    
Sbjct: 177 --TWAEQPLAELSTIGFRTAAMALTHNSIPLNDARLKAEPRLAIVMGTEGDGLPSEVIAQ 234

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A  +  + M   + +LNV+ A+AVA +
Sbjct: 235 ADYVVRIPMAHGVDSLNVAAASAVAFW 261


>gi|94986799|ref|YP_594732.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
 gi|94731048|emb|CAJ54411.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
          Length = 196

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 2/147 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R   L +VL +++DPHN+ AI RSA AF  D I      +P    + +KS++ A + +
Sbjct: 18  SLRQKNLTLVLANIHDPHNVSAIYRSADAFGIDTIHLYYTDTPFPK-LGSKSSASAKKWV 76

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             I   +    ++ +    ++ I  S  S+ +PL         A+I+G E  G+ P+   
Sbjct: 77  KTIYHQSANKLIRMLKEDNYKVIATSCTSQAQPLLSHNFTGSTAIIMGNEHAGVPPELTG 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
              S  ++ M G++++ NVS AAA+ L
Sbjct: 137 LVDSELYIPMYGMVQSFNVSVAAAIIL 163


>gi|322710050|gb|EFZ01625.1| RNA methyltransferase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 548

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 119/296 (40%), Gaps = 82/296 (27%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDA--NLP--HPFPVKTVPPQT--- 100
           FLYG   V AAL    R++++L     +N     D D   NL      PV  VP +    
Sbjct: 223 FLYGRSVVKAALQQGRRQLYKLYVYGGENRRGVDDNDVIINLAKARGVPVTIVPNEDQRL 282

Query: 101 IDKI-VGKEAVHQGLALETAPL-------------------------------------- 121
           +DK+ +G+   H G  LET+PL                                      
Sbjct: 283 MDKMSMGRP--HNGFVLETSPLPQLPVKALGSLEESPSKLGFHIELVHQTMEQKAINGEN 340

Query: 122 -LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P  +      L+++L  + DP N+GA+LR+A     D +  T R S + + V+ KSA
Sbjct: 341 TFVPKANNSAMKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKSA 400

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-----------------LSSDS---KKPL 220
           +GA E +    + +  + L+   + G++T                   +S+D      PL
Sbjct: 401 AGAAEEVTIFTVDSPIEFLEGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDCVEQTSPL 460

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-----ALNVSNAAAV 271
           +Q        L+LG EG GL P+  + A     L +P  ++     +LNVS AA +
Sbjct: 461 DQH----PCVLVLGNEGHGL-PRQIKVAADF-ELSVPRFVQGSSVDSLNVSVAAGL 510


>gi|265752733|ref|ZP_06088302.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|263235919|gb|EEZ21414.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
          Length = 178

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA   + +    
Sbjct: 25  LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYKK 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  DA+Q++H  GF  + +       L  +++ D   K A+++G E KG++ +       
Sbjct: 85  NTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS    + ++   N   K
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIIVWEFVNKLMK 176


>gi|313836782|gb|EFS74496.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA2]
 gi|314929810|gb|EFS93641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL044PA1]
 gi|314972239|gb|EFT16336.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA3]
 gi|328907668|gb|EGG27432.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08]
          Length = 279

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +P+ R+ +
Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQ---EIKND--KIALILGAEGKGLRPKTQETA 248
               L ++   GF    ++ SD    L++   +++ +  KIAL++G EG GL       A
Sbjct: 180 WAGGLDELRDHGFTVAAMAPSDGAVTLDEFSADLRQNPRKIALLMGTEGAGLSAHWISQA 239

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G + +LNV+ AAAVA Y
Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265


>gi|294776509|ref|ZP_06741983.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294449638|gb|EFG18164.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 268

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI 
Sbjct: 79  PVYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++ T+      +    + + G++  +P+   + L   +  ++ +GF+T  
Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLNGTIGDLNKFGFRTAA 195

Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++ +D    ++  I     ++A+++G EG GL  KT   A  +  + M   + +LN
Sbjct: 196 MALTDDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLN 251


>gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 270

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R    L++LD +  P NIG ++RSA      GII T+         L +++ G+L  +P 
Sbjct: 119 RQKGTLLILDGLQIPGNIGTVIRSADGAGAHGIIITQSRQRLTHPKLVRASMGSLFALPI 178

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +  S++  A   +  +G+Q +  S  ++    Q   + + A+++G E +G+         
Sbjct: 179 VE-SDVETAYAWLKRYGYQVVTTSPRARVSFRQARYSTRTAIVMGNEREGVSEDWFARHD 237

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G   +LNV NAA + LY
Sbjct: 238 LSVSIPMHGRADSLNVGNAAVLMLY 262


>gi|212697338|ref|ZP_03305466.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675787|gb|EEB35394.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 243

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190
           S+ +++LDH+ DP N+G I+RSA AFS   II         +    +++ G++  + +I 
Sbjct: 98  SKKVLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIFRLNFID 157

Query: 191 -RISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             + ++ D + K +      + G S D  K        DKI L +G E  G+    ++ +
Sbjct: 158 LELEDVKDLINKDYKLILADMDGKSVDYFKSC------DKIILAIGNEANGISKSLKDLS 211

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G I++LN    AA+A  I  N+F++
Sbjct: 212 DDFVSIKMDGEIESLN----AAIAASILMNNFSQ 241


>gi|325847687|ref|ZP_08170010.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480899|gb|EGC83951.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 243

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190
           S+ +++LDH+ DP N+G I+RSA AFS   II         +    +++ G++  + +I 
Sbjct: 98  SKKVLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIFRLNFID 157

Query: 191 -RISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             + ++ D + K +      + G S D  K        DKI L +G E  G+    ++ +
Sbjct: 158 LELEDVKDLINKDYKLILADMDGKSVDYFKSC------DKIILAIGNEANGISKSLKDLS 211

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G I++LN    AA+A  I  N+F++
Sbjct: 212 DDFVSIKMDGEIESLN----AAIAASILMNNFSQ 241


>gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
 gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
          Length = 191

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187
           R   L ++L++V+ PHN+ AILR+     CD  GI+     +P+         SG     
Sbjct: 16  RQPDLTVLLENVHKPHNLSAILRT-----CDAVGILEAHAVNPTGGVPTFNETSGGSHKW 70

Query: 188 PYIRI-SNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            Y+R+  ++ +A+  +   GF+     L  D++   E +      A++LGAE  G+  +T
Sbjct: 71  VYLRVHPSIQEAISFLKEKGFRVYATALREDARDFREVDY-TQPTAILLGAEKWGVSEET 129

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +     + M G++++LNVS AAAV L+  Q    K
Sbjct: 130 LALSHGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLK 167


>gi|319440343|ref|ZP_07989499.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 299

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P N GA++R A A    G+I        +     +S++G+L H+P  R +++ + ++++
Sbjct: 152 EPGNAGALIRVADATGAAGVIFAGETVDPQGGKAVRSSAGSLFHLPVSRHTSIPEVVERL 211

Query: 203 HSWGFQTIGLSSDSKKPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAH 253
           H  G+  +  S D    L++          +   ++A + G E  GL    Q+ A     
Sbjct: 212 HEQGYVVLATSGDGDVSLDEASIAPAGETPLLGQRVAWLFGNEAHGL-GDWQDLADVRVS 270

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           + M G+ ++ N+  AAAV LY T
Sbjct: 271 IPMQGLAESFNLVTAAAVCLYET 293


>gi|206895173|ref|YP_002247200.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737790|gb|ACI16868.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 238

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 3/143 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             +++++D V D  N+GAI R++VA S   II     + S +  + + + GA       R
Sbjct: 84  GNMVVIVDGVTDSTNLGAIFRASVALSSPNIILDLHNTGSVTPKVVEISRGAALRARVWR 143

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + N+  A+ ++   GF  +GL +     +       K+AL++G+E KG+R   +      
Sbjct: 144 L-NIKQAIPRLKENGFSVVGLEAHHGTKVYHLDLTGKVALVVGSEDKGIRTTVRTLCDHF 202

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            ++  P   ++LNV  A ++ALY
Sbjct: 203 GNI--PTDFESLNVHVALSIALY 223


>gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11]
 gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46]
          Length = 246

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D  +  Q+L++ D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G
Sbjct: 97  PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P I   +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P
Sbjct: 155 SVFHLP-IMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     T    + + G  ++LNV+ A ++ LY
Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|313773496|gb|EFS39462.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL074PA1]
 gi|313831288|gb|EFS69002.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL007PA1]
 gi|313834898|gb|EFS72612.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL056PA1]
 gi|314974163|gb|EFT18259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA1]
 gi|314976546|gb|EFT20641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL045PA1]
 gi|314984365|gb|EFT28457.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA1]
 gi|315095303|gb|EFT67279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL038PA1]
 gi|327328435|gb|EGE70197.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA2]
 gi|327444221|gb|EGE90875.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA2]
 gi|327444899|gb|EGE91553.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA1]
 gi|328760022|gb|EGF73604.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL099PA1]
          Length = 269

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +P+ R+ +
Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248
               L ++   GF    ++         E+  D      K+AL++G EG GL       A
Sbjct: 180 WAGGLGELRDHGFTVAAMALSGDSVTLDEVSADLRQNPRKVALLMGTEGAGLSAHWISQA 239

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G + +LNV+ AAAVA Y
Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265


>gi|218135121|ref|ZP_03463925.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990506|gb|EEC56517.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
           43243]
          Length = 261

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           ++ L ++++++ DP N+G I+R + A   DGII    T   Y+P       +S  G+L  
Sbjct: 107 DNGLYVIVENLQDPGNLGTIIRMSEAAGVDGIIMSPNTVDIYNPK----TIRSTMGSLYR 162

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P++   +    L++M S G +      +      +       A ++G EG GL      
Sbjct: 163 VPFVYADDFAGTLEQMKSKGVELYAAHLEGSVEYTEPDYTKASAFVIGNEGNGLTDAVTN 222

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++   + M G +++LN + AA+V  +
Sbjct: 223 ICSNRIRIPMAGKVESLNAAIAASVLTF 250


>gi|46911829|emb|CAG18627.1| putative tRNA methyltransferase [Photobacterium profundum SS9]
          Length = 267

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A    GI       P E+  VL+ +++GA   
Sbjct: 47  ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GIHKVHAVWPKENMRVLSHTSAGARNW 103

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N+ DA+ ++ + G Q +  + SD+             A+ILG E  G+  +  
Sbjct: 104 VELDTHDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEAL 163

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A     + M G++++LNVS A+A+ LY  Q
Sbjct: 164 AQADQDIIIPMVGMVQSLNVSVASALILYEAQ 195


>gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana]
 gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana]
          Length = 400

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 11/154 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--- 191
           ++VLD + DP N+G ++RSA+AF+ DG           +    +++ GA   +P +    
Sbjct: 246 VLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSGNW 305

Query: 192 --ISNLTDALQKMHSWGF---QTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKT 244
             +  L +  Q     G     T  L   SK  +E  Q +    + LILG+EG GL  + 
Sbjct: 306 NHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGLSEQA 365

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++    +  + M G  ++LNVS A  + LY+ QN
Sbjct: 366 RKVCV-LVSIPMAGDFESLNVSVAGGIFLYMLQN 398


>gi|87312089|ref|ZP_01094195.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
 gi|87285185|gb|EAQ77113.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
          Length = 269

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASG 182
           D + +  L++VL+ V  P N+GAILR+A A   D +I     T  ++P+      +++ G
Sbjct: 113 DQLSDRPLIVVLEGVEKPGNLGAILRTADAVGADCLIAADARTDIFNPNA----IRASLG 168

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +  +P    +   + L  + + G Q      +     EQ       ALILG+E +GL  
Sbjct: 169 TIFAVPTFEATT-AETLAFLRAAGAQMFAARVEGAVSYEQVELIGPTALILGSEAEGLSD 227

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      +   L M GI  +LNVS  AAV LY
Sbjct: 228 RWLADDVTNIRLPMRGIADSLNVSTTAAVLLY 259


>gi|113953546|ref|YP_729908.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
 gi|113880897|gb|ABI45855.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
          Length = 229

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186
           R + L ++++HV+ PHN+ AILR     SCD +   + ++ S    S     +A G+   
Sbjct: 18  RMANLTVLVEHVDKPHNLSAILR-----SCDAVGVLEAHAVSLSGRSRTYNSTAQGSQRW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P     N+ +A++ +   GF   G  LS D+    + +      A +LGAE  GL    
Sbjct: 73  VPLHSHPNIEEAVKTLKDRGFHLYGTNLSVDALDYRDCDFTG-PTAFVLGAEKWGLSENA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +   + M G++++LNVS A A  L+
Sbjct: 132 TKLMDTDVFIPMRGMVQSLNVSVATATLLF 161


>gi|16330947|ref|NP_441675.1| rRNA methylase [Synechocystis sp. PCC 6803]
 gi|3915481|sp|P74261|Y1673_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr1673
 gi|1653441|dbj|BAA18355.1| rRNA methylase [Synechocystis sp. PCC 6803]
          Length = 274

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 2/145 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPY 189
           +++L +VL+ + DP N+G ILR+A A   +GI +T     P+   VL +S++G+   +P 
Sbjct: 118 HARLGLVLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSPKVL-RSSAGSSLLLPQ 176

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            ++ +L   L+K H+ G Q I     + + L +        +I G+EG+GL     E  T
Sbjct: 177 QQLQSLPPLLEKFHTQGLQLIATVPQATQTLWEIDFQRPTIVIFGSEGQGLSAPVLELTT 236

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               +     +++LNV+ A  V LY
Sbjct: 237 HQVAIPQAPQVESLNVAIAVGVMLY 261


>gi|301155625|emb|CBW15093.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 357

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 9/120 (7%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAK 178
           L   LD  R    L+VLD VN+  N+G ++R+ V +    ++T    + Y+P+   V   
Sbjct: 202 LQGYLDVPRQEDCLVVLDQVNNAQNLGGVVRTCVFYGIKNVVTNQVEQLYAPAAMRV--- 258

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEG 237
            A G +EHI  +   +   AL+ +   G+Q I +S++ +   LEQ     K+AL+L +EG
Sbjct: 259 -AEGGMEHIRILETESTEIALEALRKAGYQIIHVSTNKQGIALEQLKFAAKVALVL-SEG 316


>gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
          Length = 268

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 122/285 (42%), Gaps = 38/285 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+   K+  E++ S+K++         +++KK+Q+  +K R   Q     L G H V+ A
Sbjct: 3   MDFEVKELVEELTSVKNARV-------KEWKKLQT--RKGR--KQQGRYLLEGWHLVNEA 51

Query: 61  LNNPSRKIFQLLATKNALA-RLDWDANLPHPFPV---------KTVPPQTIDKIVGKEAV 110
           L    R + +L+ TK  LA   D  A     + V         +TV PQ I  +     +
Sbjct: 52  LQ-ADRGLHELIGTKEELAAHPDIVARFKEVYSVTPAIMAAVTETVTPQGIMVVADLPDL 110

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQ               A   S   + LD V DP N+G ++R+A A    G++     + 
Sbjct: 111 HQ--------------VATDLSGAWLFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSAD 156

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKI 229
             S  + +S  G+  H+      +L    + +   G+   G   + + K           
Sbjct: 157 LFSPKVVRSMQGSQFHLALYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGF 215

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL++G EG+G+  +  +  T+  ++ M G  ++LNV+ +A + ++
Sbjct: 216 ALVMGNEGRGMSEELLKQTTANLYIPMRGQAESLNVAVSAGILMF 260


>gi|255536170|ref|YP_003096541.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342366|gb|ACU08479.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
          Length = 257

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 18/248 (7%)

Query: 37  NQKSRHTSQ--PENLFL--YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           N+K +H ++   +N F    G   V     N   + F     +  L    +D + P    
Sbjct: 7   NEKIKHLTRLLTDNRFRKKSGTFAVEGKQENERARKFGYEPVEYFLCESIFDEDFPAG-K 65

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +  V  +  +K+  + +    + +      +    A++    +++++ V  P N+GA+LR
Sbjct: 66  ISLVSEKVYEKVAYRGSSEGIIGIYNTKSFNLNAFAIKEDSSVIIIESVEKPGNLGAVLR 125

Query: 153 SAVAFSCDGIITT----KRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQKMHSWG 206
           S  AF  D +I T      Y+P+    + +S+ G L  +   +  N  L D L+  H   
Sbjct: 126 SCEAFGIDALIITDPKVDFYNPN----VIRSSVGCLFGMDIFQSENNALLDFLESNHFKI 181

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F T  +S D+     Q+    + AL+ G E  GL        T+   + M G I +LN+S
Sbjct: 182 FTT-RMSDDATDIFNQDFGG-RSALVFGTEHSGLSDFWIGKGTNTL-VPMTGSIDSLNLS 238

Query: 267 NAAAVALY 274
           NA AV+ Y
Sbjct: 239 NAVAVSGY 246


>gi|299137092|ref|ZP_07030275.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
 gi|298601607|gb|EFI57762.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
          Length = 276

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L A +NS++ +VL+ + DP N G ++RSA AFS   +  T       +    ++++G++ 
Sbjct: 109 LGAPKNSEVCLVLEDIQDPGNFGTLIRSAEAFSVSRVYVTPGTVNQWNPKAMRASAGSVF 168

Query: 186 HIPYIR--ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            +P +R  +S +  AL       +  +  SS +  P+ Q       AL++G EG GL   
Sbjct: 169 RMPVVRGPLSEIKSALGAEGVRLYAAVARSSGA-TPVMQAKLLAPCALMIGNEGAGLSMT 227

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E A     +H+P  +++LN + A +  +Y
Sbjct: 228 ALELADE--QVHIPCSVESLNAAIAGSTLMY 256


>gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 261

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 8/144 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           L++LD + DP N+G ++R+       GII    T   Y+P     + +S  G++  +P+I
Sbjct: 114 LLILDSLQDPGNLGTLVRAGEGAGITGIIMNESTVDIYNPK----VIRSTMGSVFRVPFI 169

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + +L D ++++++        S +     +       IA I+G E  G+     +   +
Sbjct: 170 YVKDLKDIIEELYARKIDIYASSLEGATEYDAPDYRGSIAFIIGNEAAGISKDVLDAVKN 229

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G +++LN + A ++ +Y
Sbjct: 230 KVKIPMLGEVESLNAAVAGSILMY 253


>gi|255690837|ref|ZP_05414512.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
 gi|260623577|gb|EEX46448.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
          Length = 267

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 6/177 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + + K+ G       L     P+L    +    ++ ++V+D V D  NIGAI
Sbjct: 79  LPVYTGSRELLSKLTGYVLTRGVLCAMHRPILRRVEEICHEARRIVVIDGVVDATNIGAI 138

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++  +      +    + + GA+  IP+   + +  +L  + + GF+T 
Sbjct: 139 FRSAAALGMDAVLLRRNSCDPLNRRAVRVSMGAVFCIPW---TWMDGSLSDLSNLGFRTA 195

Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            ++ +D+   ++  I     K+A+++G+EG GL  +T   A  +  + M   + +LN
Sbjct: 196 AMALTDNSVSIDDPILMAESKLAIVVGSEGDGLAHETIAEADYVVRIPMSYGVDSLN 252


>gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 272

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L++VLD + DP N+G I+R+A A    G+IT +         + ++++GAL H+P 
Sbjct: 114 RGTPLVVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPKVVRASAGALFHLPA 173

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                    L+     G Q           L +   +   AL +G E +G        A 
Sbjct: 174 FGDLPAPAVLEFFTGAGVQKFVADPRGDYSLYECDFSRPTALFMGNEARGCGEMLHAAAD 233

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + MPG  ++LNV  AA++ +Y
Sbjct: 234 RVVAIPMPGQAESLNVGVAASLFIY 258


>gi|309810976|ref|ZP_07704774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308434940|gb|EFP58774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 270

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 10/187 (5%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAIL 151
           V    PQ +  +   E   QG+     P+  P  D +  S + +++  +V DP N G ++
Sbjct: 82  VHDCSPQVLAAMCDTEQ-PQGIIAVARPIDRPLADVLAGSPKFVVICTNVRDPGNAGTVI 140

Query: 152 RSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           R A A   D +I    +   Y+P     L +S+ G+L H+P  R S++ +      + G 
Sbjct: 141 RGADATGADAVILSDASVDLYNPK----LVRSSVGSLWHLPISRGSSIEEIFAACRAAGL 196

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                    +  L         A ++G E  GL P+ +E    +  + + G  ++LN++ 
Sbjct: 197 TLHAADGVGETFLPDVDLATPHAWVMGNEAWGLEPEVREQCDDVVRVPIYGHAESLNLAM 256

Query: 268 AAAVALY 274
           AA V LY
Sbjct: 257 AATVCLY 263


>gi|302382926|ref|YP_003818749.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193554|gb|ADL01126.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 268

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 9/198 (4%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVR----NSQLLMVLDH 140
            +P   PV  V    +D+IVG   +H+G LAL   PL + TLDAV        +++    
Sbjct: 71  TVPAGTPVFAVGQDVLDRIVGFP-LHRGILALGEKPL-ARTLDAVLADLPEQAVVVAASE 128

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + +  NIG + R+A AF    ++T  R          + + GA+   P     +L   + 
Sbjct: 129 IGNHDNIGGLYRNAAAFGAAAVLTDDRCGDPFYRKSIRVSVGAVLRTPGAAAPSLEALVD 188

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + +  F+ I LS  + +PL+      + AL+LG+EG GL P +    T    + M G  
Sbjct: 189 ALEAARFEVIALSPSAIEPLKGLKPGGRRALLLGSEGPGL-PASVMARTRTVGIPMAGGF 247

Query: 261 KALNVSNAAAVALY-ITQ 277
            +LNVS  +A+ LY +TQ
Sbjct: 248 DSLNVSVTSALGLYQLTQ 265


>gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 275

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V  ++ ++VL+ VND  N+G+I R+A     D ++     +        + + G    +P
Sbjct: 119 VDGARTVVVLEGVNDHENLGSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVP 178

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLE--QEIKNDKIALILGAEGKGLRPKT 244
           Y R ++    L  +   GF+ + ++   D+++  E    ++   IAL++GAEG GL    
Sbjct: 179 YARAADWPADLLMLQQLGFRLLAMTPHGDARELGEAMDAVREQPIALLVGAEGPGLTAAA 238

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +     + M     +LNV+ AAA+A Y
Sbjct: 239 LRISDLRVRIPMSRGTDSLNVATAAALAFY 268


>gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana]
 gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana]
 gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 352

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 11/154 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--- 191
           ++VLD + DP N+G ++RSA+AF+ DG           +    +++ GA   +P +    
Sbjct: 198 VLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSGNW 257

Query: 192 --ISNLTDALQKMHSWGF---QTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKT 244
             +  L +  Q     G     T  L   SK  +E  Q +    + LILG+EG GL  + 
Sbjct: 258 NHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCLILGSEGNGLSEQA 317

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++    +  + M G  ++LNVS A  + LY+ QN
Sbjct: 318 RKVCV-LVSIPMAGDFESLNVSVAGGIFLYMLQN 350


>gi|225376828|ref|ZP_03754049.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
           16841]
 gi|225211324|gb|EEG93678.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
           16841]
          Length = 284

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 72/146 (49%), Gaps = 8/146 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           L++L+ + DP N+G +LR+       G++    T   ++P       +S  G++  +P+ 
Sbjct: 121 LLILESIQDPGNLGTMLRTGEGAGISGVVMNHTTVDLFNPK----TIRSTMGSIYRMPFF 176

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +L + + ++ + G +T       K   ++       A ++G EG GL  +T + A +
Sbjct: 177 VTRDLAETICELKNAGVKTYAAHLKGKMQYDEPDYTGATAFMIGNEGNGLSDETADLADT 236

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M G +++LN + +A++ +Y T
Sbjct: 237 YIKIPMCGQVESLNAAISASLLMYET 262


>gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacterium bovis AF2122/97]
 gi|121636804|ref|YP_977027.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215402681|ref|ZP_03414862.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
           02_1987]
 gi|215410467|ref|ZP_03419275.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426147|ref|ZP_03424066.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|215429738|ref|ZP_03427657.1| putative rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215445022|ref|ZP_03431774.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|218752546|ref|ZP_03531342.1| putative rRNA methyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|219556746|ref|ZP_03535822.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|224989275|ref|YP_002643962.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800097|ref|YP_003033098.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254231189|ref|ZP_04924516.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
 gi|254363812|ref|ZP_04979858.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549858|ref|ZP_05140305.1| rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185777|ref|ZP_05763251.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|260199901|ref|ZP_05767392.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|260204083|ref|ZP_05771574.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289442291|ref|ZP_06432035.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289446446|ref|ZP_06436190.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289555338|ref|ZP_06444548.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289568845|ref|ZP_06449072.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289573507|ref|ZP_06453734.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289744611|ref|ZP_06503989.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289749403|ref|ZP_06508781.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289752936|ref|ZP_06512314.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
 gi|289756966|ref|ZP_06516344.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289761012|ref|ZP_06520390.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
 gi|294996361|ref|ZP_06802052.1| rRNA methyltransferase [Mycobacterium tuberculosis 210]
 gi|297633398|ref|ZP_06951178.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
 gi|297730383|ref|ZP_06959501.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN R506]
 gi|298524373|ref|ZP_07011782.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306792256|ref|ZP_07430558.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|313657710|ref|ZP_07814590.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475]
 gi|38258679|sp|P59968|Y905_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb0905
 gi|31617656|emb|CAD93766.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
           bovis AF2122/97]
 gi|121492451|emb|CAL70919.1| Possible rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600248|gb|EAY59258.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
 gi|134149326|gb|EBA41371.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
           Haarlem]
 gi|224772388|dbj|BAH25194.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321600|gb|ACT26203.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289415210|gb|EFD12450.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289419404|gb|EFD16605.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289439970|gb|EFD22463.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289537938|gb|EFD42516.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289542599|gb|EFD46247.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289685139|gb|EFD52627.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289689990|gb|EFD57419.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289693523|gb|EFD60952.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
 gi|289708518|gb|EFD72534.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
 gi|289712530|gb|EFD76542.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|298494167|gb|EFI29461.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308339179|gb|EFP28030.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|323720590|gb|EGB29668.1| rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326904900|gb|EGE51833.1| rRNA methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328459835|gb|AEB05258.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 288

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187
           V  ++ + VL+ VND  N+G+I R+A   S D ++  T    P     +  S   AL  +
Sbjct: 126 VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 184

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPK 243
           PY R ++    L  +   GF+ + ++         E    + +++IAL++GAEG GL   
Sbjct: 185 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 244

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +     + M     +LNV+ AAA+A Y
Sbjct: 245 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 275


>gi|269925433|ref|YP_003322056.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789093|gb|ACZ41234.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 212

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 30/161 (18%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKR-YSPSESAVLAKSASG-ALE 185
           R   L +VL++V+DPHN+ A+LR     SCD  G++     Y+  E   L+K+ SG AL+
Sbjct: 22  RQPDLTVVLENVHDPHNVSAVLR-----SCDAVGVLAVHLVYTIEEFPDLSKNVSGSALK 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIG------------LSSDSKKPLEQEIKNDKIALIL 233
            +  I+  ++ D    + S G                  S D  KP          AL+ 
Sbjct: 77  WLEIIKHKDIQDCYDTLRSQGMTIYTTYLADPQRSHDLYSLDLTKP---------TALVF 127

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G E +G+  +    A     + M G++++LN+S A AV LY
Sbjct: 128 GNEQRGVSEEASRLADGNFVIPMMGMVQSLNISVACAVTLY 168


>gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 253

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 2/142 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A A    G+   +  +   S  + +S  G+  H+P +    +
Sbjct: 111 LILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPILE-GAI 169

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              L+++ S G    G   + +  P  +  K    A ILG EG+G+ P+         ++
Sbjct: 170 PPFLKQLRSAGVTIYGTELNKEAVPYTELPKEQTAAFILGNEGQGVHPELLALTDKNVYI 229

Query: 255 HMPGIIKALNVSNAAAVALYIT 276
            + G  ++LNV+ AA + +Y +
Sbjct: 230 PIYGQAESLNVAIAAGILMYFS 251


>gi|297571490|ref|YP_003697264.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931837|gb|ADH92645.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 281

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 15/187 (8%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV----RNSQLLMVLDHVNDPH 145
            PV     + I+++ G   VH+G LA    P L P+++        ++ ++VL+++ +  
Sbjct: 82  IPVYVASEELIEELTGFH-VHRGALAAMNRPEL-PSVEEFLGPDSTARRIIVLENLVNHT 139

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+ RS  A   D ++ T   S        + + G +  +P+ RI +   ++Q +   
Sbjct: 140 NVGAVFRSMAALGFDAVLLTDSASDPLYRRAVRVSMGTVFQVPWTRIPHWPRSMQMLKDR 199

Query: 206 GFQTIGLS-SDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           G+ T  L+  D   PL+Q  +       + K+ALILG EG GL   T   A     + M 
Sbjct: 200 GWITASLALRDDALPLDQFAQLPDVMAPDSKVALILGTEGDGLSAATISHADHAVVIPMA 259

Query: 258 GIIKALN 264
           G + +LN
Sbjct: 260 GGVDSLN 266


>gi|254362652|ref|ZP_04978739.1| RNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|153094271|gb|EDN75135.1| RNA methyltransferase [Mannheimia haemolytica PHL213]
          Length = 344

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLP-HPFPVKTVPPQTIDKI 104
           E + +YG +   +        I +L AT     +L D  + L  H      +  + ++++
Sbjct: 106 EEMKVYGENACISLFQQRPESIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDREEMERV 165

Query: 105 VGKEAVHQG----LALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            G E  H G    L  +TA  +L   L   +    L++LD VN+  N+G I+R+   +  
Sbjct: 166 TGTE--HHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGV 223

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GIIT    S + SA  A+ A G LE +  +   N   AL ++   G+Q + L+   + P
Sbjct: 224 KGIITENVDSLNSSAA-ARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLTRHKQAP 282

Query: 220 LEQEIK-NDKIALIL 233
              +IK  +K+  +L
Sbjct: 283 SLTKIKLAEKVVFVL 297


>gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|148660658|ref|YP_001282181.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|167968352|ref|ZP_02550629.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|307083402|ref|ZP_07492515.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|1731374|sp|Q10543|Y881_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           Rv0881/MT0904
 gi|1314020|emb|CAA97388.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148504810|gb|ABQ72619.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|308366818|gb|EFP55669.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
          Length = 288

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187
           V  ++ + VL+ VND  N+G+I R+A   S D ++  T    P     +  S   AL  +
Sbjct: 126 VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 184

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPK 243
           PY R ++    L  +   GF+ + ++         E    + +++IAL++GAEG GL   
Sbjct: 185 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 244

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +     + M     +LNV+ AAA+A Y
Sbjct: 245 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 275


>gi|296111277|ref|YP_003621659.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
 gi|295832809|gb|ADG40690.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
          Length = 257

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 122/252 (48%), Gaps = 18/252 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+ +  +K R  ++     L G H V  A+   S K   ++AT+  +A    D  +
Sbjct: 13  KAWKKLAT--KKGRQENR--TYLLDGWHLVEEAIK-ASAKFHAVMATEEQMATHLPD--V 65

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHN 146
           PH  P   +  +    I G     QG+  E + L   T D    +    ++LD++ DP N
Sbjct: 66  PHGVPAFEISDEVAKHIAGTN-TPQGIFAEIS-LPDKTFDPTYVHDGAWLLLDNIQDPGN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDAL--QKM 202
           +G ++R+A A    G++  +  + + S  + ++  G+  H+  +   ++   DAL    +
Sbjct: 124 VGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAMQGSQFHLEVLNGDLNEWADALTANNL 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             +G Q +  S+ S + +E    + + ALI+G EG+G+  +  E  T+  ++ + G  ++
Sbjct: 184 SVYGSQ-LNESAQSYRAIE---PSTQFALIVGNEGQGMSNELAEKTTTNLYIPIQGQAES 239

Query: 263 LNVSNAAAVALY 274
           LNV+ A  + ++
Sbjct: 240 LNVAIAGGILMF 251


>gi|224010707|ref|XP_002294311.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220970328|gb|EED88666.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 253

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           + + LD V DP N+GA+LRSA       GI+   + S   +  ++ +++GALE +     
Sbjct: 90  VWLALDEVVDPQNLGALLRSAYFLGGRVGILVCSKNSSPLTTTVSAASAGALEFMTVYST 149

Query: 193 SNLTDALQKMHSWGFQTIGLSS---DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           SNL   L +    G++ +G ++   DS      E     I L+LG+EG+GLR     + +
Sbjct: 150 SNLPKMLNRAREDGWRVLGAAADIPDSGGAARSETGKPTI-LVLGSEGRGLRTWVARSCS 208

Query: 250 SMAHLHMPG 258
               + +PG
Sbjct: 209 GF--VKVPG 215


>gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
 gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
          Length = 194

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 9/150 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           L +++++V+ PHN+ AILR+     CD  GI+     +P+         SG      Y+ 
Sbjct: 23  LTVLMENVHKPHNLSAILRT-----CDAVGILQAHAVNPTGGVPTFNETSGGSHKWVYLE 77

Query: 192 ISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETAT 249
           +   T+A  + +   GF     +        +E+   +  A++LGAE  G+  +    A 
Sbjct: 78  VHPTTEAAFRHLRERGFSVYATALKEGARDYREVDYTRPTAIVLGAEKWGVSEEALALAD 137

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + H+ M G++++LNVS AAAV L+  Q  
Sbjct: 138 GLIHIPMLGMVQSLNVSVAAAVILFEAQRQ 167


>gi|169334564|ref|ZP_02861757.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259281|gb|EDS73247.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
           17244]
          Length = 252

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 5/148 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  +N  +L  LD V DP N+G ++RS+V    D +I     SP  S  +  SA   +  
Sbjct: 104 DINKNDNILY-LDTVQDPENVGGLIRSSVCTDFDAVILNSSASPFLSKAVRASAGSIIN- 161

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              I +      L+ +   GF  I  + + K+ +    KN+   LI+G EG G+  +  +
Sbjct: 162 -TKIILDEDYKILKTLKEKGFDIIASTLNGKEDITLNKKNN--VLIVGNEGNGISDECLK 218

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            AT    + M G  ++LN + + ++ +Y
Sbjct: 219 YATKEVKIPMSGKCESLNANVSGSILMY 246


>gi|222529198|ref|YP_002573080.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456045|gb|ACM60307.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
           6725]
          Length = 270

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 121/284 (42%), Gaps = 34/284 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  IS +++E I  +K  H  K R   R +                    + G+  V  A
Sbjct: 6   VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46

Query: 61  LNNPSRKIFQLLATKNALARLD---WDA-NLPHPFPVKTVP--PQTIDKIVGKEAVHQGL 114
           +      I  ++ ++ A  R     W+   L     +K V   P  + + +   +  QG+
Sbjct: 47  IEYQIECINLVIFSQQAKDRYQEFYWECKRLLQDGKIKRVIEIPDKLFEYITTTSTPQGI 106

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSP 170
             E    +   ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK     Y+P
Sbjct: 107 LAE-CNFVDKDINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G+L H+  +R +     ++ +    F     +      + + + + +  
Sbjct: 166 KTT----RATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFC 221

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +++G E +G+     + AT    + M G  ++LN + AA++ LY
Sbjct: 222 IVIGNESEGVSDSFAKVATRKIKIPMVGETESLNAAVAASIVLY 265


>gi|212692475|ref|ZP_03300603.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
 gi|237724320|ref|ZP_04554801.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
 gi|212664950|gb|EEB25522.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
 gi|229437189|gb|EEO47266.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 178

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD V   HNIG++ R++ AF  D I      +      + K+A GA   + +    
Sbjct: 25  LAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAENSVEWRYKK 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  DA+Q++H  GF  + +       L  +++ D   K A+++G E KG++ +       
Sbjct: 85  NTLDAVQELHDQGFIVLAIEQVEGSTLLDKLELDADKKYAIVMGNEVKGVQQEVVNACDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS    + ++   N   K
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176


>gi|161936340|ref|YP_128429.2| tRNA guanosine-2'-O-methyltransferase [Photobacterium profundum
           SS9]
          Length = 234

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A    GI       P E+  VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GIHKVHAVWPKENMRVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N+ DA+ ++ + G Q +  + SD+             A+ILG E  G+  +  
Sbjct: 71  VELDTHDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A     + M G++++LNVS A+A+ LY  Q
Sbjct: 131 AQADQDIIIPMVGMVQSLNVSVASALILYEAQ 162


>gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
           19718]
 gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
           19718]
          Length = 277

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 105/258 (40%), Gaps = 15/258 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA------- 77
           R H  +KK+      +R         L G+H + + L +    +  +++   +       
Sbjct: 7   REHPLFKKLFKLQHSARQRHDEGMTLLDGIHLLQSCLASGKTPVLLIVSESGSQHPEISQ 66

Query: 78  -LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            L  +D D   P       +     ++I   +     LAL   P  +   D  +NS   +
Sbjct: 67  LLIHIDKD---PQKTDCLMLSDTLFNQISPVKTPVGILALIDIPQHTLPADTYQNS-FSI 122

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L+ + DP N+G++LRSA A   +G+  +   + + S    ++  GA  H   ++I    
Sbjct: 123 LLEGIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAWSPKTLRAGMGA--HFS-LKIHENV 179

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           D +Q    +    +  +      L        +  + G EG G+  +  ET      + M
Sbjct: 180 DLIQVARQFAGNVVATTLHDASNLFHTDLRGAVVFVFGNEGGGISEELLETVHQRVMIPM 239

Query: 257 PGIIKALNVSNAAAVALY 274
           PG  ++LNV+ AAA+ L+
Sbjct: 240 PGCTESLNVATAAAICLF 257


>gi|304389322|ref|ZP_07371287.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327440|gb|EFL94673.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 275

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P++       L ++L    DP N+G ++R A A     +   +  + + S  + +++ G+
Sbjct: 113 PSVTGSPEGSLALILPATQDPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSK-KPLEQEI-KNDKIALILGAEGKG 239
           + H+P  R  +L   ++ + + G+  +G  LS D    P+      N K+A ++G E  G
Sbjct: 173 VFHVPTPRFQDLAAVVKALRAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHG 232

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L    +     +  + M G  ++LNV++AA + L+++
Sbjct: 233 LDATEESWCDVLVSIPMFGRAESLNVTSAATLCLWMS 269


>gi|157150531|ref|YP_001449839.1| spoU rRNA methylase family protein [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075325|gb|ABV10008.1| spoU rRNA Methylase family protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 246

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--S 193
           + L+ V DP N+G I+R+A A   DGI  ++  +   +    +S  G+  H+P  R+  +
Sbjct: 105 LFLEDVQDPGNLGTIIRTADAAGFDGIFISEHSADLYNLKTLRSMQGSHFHLPIYRLATA 164

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L D  +K     F +  LS DS    E+   +    L++G EG+G+    +  A  + H
Sbjct: 165 DLIDLAKKSDLPIFAST-LSDDSID-YEKLKGSQNFILVMGNEGQGISSMIEAAADQLVH 222

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA + ++
Sbjct: 223 IPMKGKAESLNVAVAAGILIF 243


>gi|325579151|ref|ZP_08149107.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159386|gb|EGC71520.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 357

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 9/120 (7%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---KRYSPSESAVLAK 178
           L   LD  R    L+VLD VN+  N+G ++R+   +    ++T    + Y+P+   V   
Sbjct: 202 LQGYLDVPRQEDCLVVLDQVNNAQNLGGVVRTCAFYGIKNVVTNQVEQLYAPAAMRV--- 258

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEG 237
            A G +EHI  +   +   AL+ +   G+Q I +S++ +   LEQ    +K+AL+L +EG
Sbjct: 259 -AEGGMEHIRILETESTEIALEALRKAGYQIIHVSTNKQGVALEQLKFAEKVALVL-SEG 316


>gi|116630022|ref|YP_815194.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853791|ref|ZP_04644157.1| rRNA methylase [Lactobacillus gasseri 202-4]
 gi|282851363|ref|ZP_06260728.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
 gi|311110348|ref|ZP_07711745.1| rRNA methylase [Lactobacillus gasseri MV-22]
 gi|116095604|gb|ABJ60756.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238833600|gb|EEQ25871.1| rRNA methylase [Lactobacillus gasseri 202-4]
 gi|282557331|gb|EFB62928.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
 gi|311065502|gb|EFQ45842.1| rRNA methylase [Lactobacillus gasseri MV-22]
          Length = 253

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 115/257 (44%), Gaps = 12/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL N    ++ +L T  AL +L    
Sbjct: 8   NNPTIKNLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSEALEKLTTSY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     +K      I + +      Q + +   P+  P   +    + + VLD++ DP 
Sbjct: 66  RLKDDKVIKIT--DAIAEHLSSTKNSQDIFM-VLPINQPKSFSFEYGKWV-VLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  ++ + + +A+      
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQ-NPILEAISSFKEN 180

Query: 206 GFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G    + +   + K L   I   ++AL++G E  G      ETA    ++ + G  ++LN
Sbjct: 181 GIPVYVSILDKTAKSLNNCIPVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLN 240

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 241 AAVAAGIMIY----HFS 253


>gi|220903872|ref|YP_002479184.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868171|gb|ACL48506.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 250

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 2/145 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +VL +++DPHN+ AI RS  AF    +      +P   A+  K+++ A + +  
Sbjct: 74  RQPDLTLVLANIHDPHNVSAIYRSCDAFGVSRVNLYYTNTPF-PALGRKTSASARKWVES 132

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R  +    ++ +     Q +  S S + +PL         A+I+G E  G+ P+  + A
Sbjct: 133 ARHKDSAALMESLRGQNMQVLATSCSPTARPLRDWDFTRPTAVIMGNEHSGVEPELLQMA 192

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
               ++ M G+I++ NVS AAA+ L
Sbjct: 193 DGELYIPMYGMIQSFNVSVAAAIIL 217


>gi|78356529|ref|YP_387978.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218934|gb|ABB38283.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 196

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALE 185
           ++R   L +VL +++DPHN+ AI RS  AF    +    T    P  S   + SA   +E
Sbjct: 18  SLRQKDLTLVLANIHDPHNVSAIYRSCDAFGVSRVHLYYTDTPFPPLSGRSSASARKWVE 77

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
              +   + L  AL+K    G + +  S S S +PL +       A+I+G E +G+  + 
Sbjct: 78  TERHEDPAQLAAALRKK---GCRILATSCSPSARPLREWDMTGPTAIIMGNEHRGVDAEL 134

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
            E      ++ M G+I++ NVS AAAV L
Sbjct: 135 MEIVDGEVYIPMFGMIQSFNVSVAAAVIL 163


>gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 257

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 109/227 (48%), Gaps = 8/227 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L G+H V  A+     K   ++AT+  +A  D+  N+PH  P   +  +    I G   
Sbjct: 31  LLDGLHLVEEAVK-AGAKFHAIMATEKQMA--DYLPNVPHGVPAFEISEEVAKHIAGTN- 86

Query: 110 VHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             QG+  E + L   T D +  +    ++LD + DP N+G ++R+A A    G++     
Sbjct: 87  TPQGIFAEIS-LPEKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGAGT 145

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227
           + + +  + ++  G+  H+  +   +L++ +  + +      G   + K    ++++ + 
Sbjct: 146 ADAFAPKVVRAMQGSQFHLEVLN-GDLSEWVAALATNNLPVYGSQLNEKAKSYRDVEPST 204

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  LI+G EG+G+  +  E  T+  ++ + G  ++LNV+ A  + ++
Sbjct: 205 QFGLIVGNEGQGMSAELAEKTTANLYIPIQGQAESLNVAIAGGILMF 251


>gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308370524|ref|ZP_07421873.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308371788|ref|ZP_07426239.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308374122|ref|ZP_07434956.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308375279|ref|ZP_07443391.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308376535|ref|ZP_07439209.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308377535|ref|ZP_07479580.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308325225|gb|EFP14076.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308331651|gb|EFP20502.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308335372|gb|EFP24223.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308342913|gb|EFP31764.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308346741|gb|EFP35592.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308350655|gb|EFP39506.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308355315|gb|EFP44166.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
          Length = 257

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187
           V  ++ + VL+ VND  N+G+I R+A   S D ++  T    P     +  S   AL  +
Sbjct: 95  VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 153

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLE-QEIKNDKIALILGAEGKGLRPK 243
           PY R ++    L  +   GF+ + ++   +  K P     + +++IAL++GAEG GL   
Sbjct: 154 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 213

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +     + M     +LNV+ AAA+A Y
Sbjct: 214 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 244


>gi|282907859|ref|ZP_06315694.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282328243|gb|EFB58521.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
          Length = 110

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 55/98 (56%)

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AK+++GA+EH+P IR++NL   + ++   GF   G  +++         +  +A+++G+E
Sbjct: 1   AKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSE 60

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+G+     +       + M G + +LN S AA++ +Y
Sbjct: 61  GQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMY 98


>gi|46137319|ref|XP_390351.1| hypothetical protein FG10175.1 [Gibberella zeae PH-1]
          Length = 695

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 115/296 (38%), Gaps = 82/296 (27%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-------PHPFPVKTVPP---Q 99
           FLYG   V AAL    RK++ L        R+D   N         H  P+ TVP    +
Sbjct: 312 FLYGRSVVKAALEQNRRKLYNLYIY-GGENRMDNKDNTIMTRMAEKHGVPITTVPTHEQR 370

Query: 100 TIDKI-VGKEAVHQGLALETAPL---------------------------------LSPT 125
            +DK+ +G+   H G  LE +PL                                 ++ T
Sbjct: 371 IMDKMSMGRP--HNGFVLEASPLPQLPIKSLGKLEESPGRLGFHVDLDYQTREEAAVNGT 428

Query: 126 LDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
               R S        +++L+ + DP N+G I+R+A     D +  T R S + + V+ KS
Sbjct: 429 DTFTRRSNDVTPKPFVLLLNEIMDPGNLGGIIRTASYLGVDAVCITNRGSSTLTPVVLKS 488

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQT-------------------IGLSS-DSKKP 219
           A GA+E I    + +    +++    G++T                   I L S +S  P
Sbjct: 489 AVGAVEEISLFTVDDPVKFVEESGKAGWKTYAAVAPPDRKLVRRHGDKFISLDSIESTSP 548

Query: 220 LEQEIKND-KIALILGAEGKGLRPKTQ---ETATSMAHLHMPGIIKALNVSNAAAV 271
           L     ND    L+LG EG GL    +   +   S+        + +LNVS AA +
Sbjct: 549 L-----NDHPCLLVLGNEGHGLSKPVKVASDYELSVPRFVQGSCVDSLNVSVAAGL 599


>gi|227889545|ref|ZP_04007350.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
 gi|227850023|gb|EEJ60109.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
          Length = 253

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 118/266 (44%), Gaps = 30/266 (11%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL +    ++ +L T  AL +LD   
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEDALKSHENYLY-VLGTAEALKKLDASY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVG-KEAVHQGLA--------LETAPLLSPTLDAVRNSQLLM 136
            L              DK++   +A+ Q L+            P+  P   +    + + 
Sbjct: 66  KLKD------------DKVIQITDAISQHLSSTKNSQDIFMVLPINQPKSFSFEYGKWV- 112

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD++ DP N+G I+R+A A   DG++ ++      +  + +S  G+  HI  I+ + + 
Sbjct: 113 VLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQ-NPIL 171

Query: 197 DALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +A+      G    + +   + K L       ++AL++G E  G   +  ETA    ++ 
Sbjct: 172 EAISSFKENGLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIP 231

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           + G  ++LN + AA + +Y    HF+
Sbjct: 232 IKGKAESLNAAVAAGIMIY----HFS 253


>gi|218960735|ref|YP_001740510.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
 gi|167729392|emb|CAO80303.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
          Length = 246

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD ++DP N+G I R A AF+ D +I + +     S  + +++ GA+  +P+        
Sbjct: 109 LDDISDPGNLGTIFRIAAAFNIDCLILSPKTCEISSPKVIRASLGAVYKVPFFFCE---- 164

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMAHLHM 256
            ++K+         L    K PL       +  ++ LG E KG+     + A     + M
Sbjct: 165 -MEKLQELKAHIFALDMQGKIPLTNFAPPSEPYIVALGNEAKGISSSILKIAEETLCIPM 223

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNVS ++A+  Y
Sbjct: 224 PGEMESLNVSVSSAILAY 241


>gi|29349921|ref|NP_813424.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341832|gb|AAO79618.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 266

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 6/176 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + +  + G       L     P +    +  R ++ ++V+D V D  NIGAI 
Sbjct: 79  PVYTGSRELLATLTGYVLTRGVLCAMRRPAVRSMAEVCREARRIVVIDGVVDTTNIGAIF 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++ T+      +    + + G +  +P+   + +  +L  +   GF+T  
Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPW---TWMDGSLSDLGKLGFRTAA 195

Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++ +D+   ++  +     ++A+++G EG GL P+T   A  +  + M   + +LN
Sbjct: 196 MALTDNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLN 251


>gi|292670656|ref|ZP_06604082.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647683|gb|EFF65655.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 294

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD V DP N+G ILR+A A    G+I  +  +   S  + ++  GAL H+P+    
Sbjct: 142 LYIVLDRVQDPGNVGTILRTADAAGASGVILLRGSADVYSGKVVRATMGALFHVPFAEGI 201

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMA 252
            + + +  + S        + D    +         + ++ G E  G+   ++E   +  
Sbjct: 202 AVMELMDFVRSERVTLCAAACDDGACMHYAADLRQPLVIVFGNEANGV---SEELLAASE 258

Query: 253 HLHMP--GIIKALNVSNAAAVALY 274
           H+++P  G  ++LNVS A A  LY
Sbjct: 259 HIYIPMCGSAESLNVSAAVAAVLY 282


>gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
 gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
          Length = 221

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   HNIGA+ R++ AF  + I      +      + K+A GA   + +    
Sbjct: 68  LVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAEYTVDWKYFK 127

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           +  DA+ ++H+ G+  + +   +   L  E+   K  K A++LG E KG++ +  +    
Sbjct: 128 HTQDAVNELHNDGYTVLAIEQCAGSTLLDELVLEKGRKYAIVLGNEVKGVQQEVVDMCDG 187

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 188 CIEIPQFGTKHSLNVSVTAGIMIW 211


>gi|285019054|ref|YP_003376765.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283474272|emb|CBA16773.1| putative trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 277

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 30/247 (12%)

Query: 27  HRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWD 84
           HRD  ++  FN  ++ +  +PE +                RK++   A   AL   L W 
Sbjct: 30  HRDELRLYGFNAVRAVYARRPEAI----------------RKLYLAEARIPALQPLLKW- 72

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA---LETAPLLSPTLDAVR----NSQLLMV 137
             + H    + V    ++K+    A H+G+    L  APL  P  D +R       L + 
Sbjct: 73  -CVAHRVGYRVVDDNDLNKLA-ASAHHEGVVADVLREAPL--PLADWLRTLAPGPALALW 128

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V +PHN GAILRSA  F    I+  +  + + S   A+ A G  E +P +R+     
Sbjct: 129 LDGVGNPHNFGAILRSAAHFGAAAILLPEGATLALSGAAARVAEGGAEAVPLVRLPAPAQ 188

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           AL ++ +  F       +    L       ++  ++GAE  G+     +       +   
Sbjct: 189 ALAQLRNADFALAATLVEGGDALFATALPQRLIYVMGAERDGMDRGFAQACDLRLSIPGS 248

Query: 258 GIIKALN 264
           G +++LN
Sbjct: 249 GAVESLN 255


>gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
 gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
          Length = 246

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D  +  Q+L++ D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G
Sbjct: 97  PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P +   +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P
Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     T    + + G  ++LNV+ A ++ LY
Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|258596931|ref|XP_001349687.2| apicoplast RNA methyltransferase precursor, putative [Plasmodium
           falciparum 3D7]
 gi|254688488|gb|AAC71960.3| apicoplast RNA methyltransferase precursor, putative [Plasmodium
           falciparum 3D7]
          Length = 354

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 118/278 (42%), Gaps = 47/278 (16%)

Query: 45  QPENL--FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPV---KTVPP 98
           Q +N+  ++YG+++V A L    R I +++  KN  L R     N  + F     + V  
Sbjct: 79  QNDNISDYIYGLNSVYAVLKKNERTIEEVIVNKNIKLNRKIHKQNYEYIFDELKKRNVSI 138

Query: 99  QTIDKIVGKEAV----HQGLALET-APLLSPTLDAVRN-------SQLLMVLDHVNDPHN 146
           Q ++K    E V    H  + ++T    ++   D ++N       + + + L  V D  N
Sbjct: 139 QYMEKYKMNELVGGFPHNDIIMKTHYRYMNNYKDFIKNIKHLPNKNNIFICLHDVYDNMN 198

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAV-------LAKSASGALEHIPYIRISNLTDAL 199
           IG + RS   F    I   K+   +E          +  S+ G+ E + +  I+N+ + +
Sbjct: 199 IGNVCRSIFFFGGHTIFLKKKKKVNEKKNNVKIDTPILHSSVGSSEFLNFYHINNMANFM 258

Query: 200 QKMHSWGFQTIGLSSDSKKPLE-------QEIK---NDKIALILGAEGKGLRPKTQETAT 249
             M   GF TI  +S  K             IK   N+KI +ILG E KGL+    E + 
Sbjct: 259 NHMKLNGF-TIYSTSCHKNNTSCHKYINLNNIKIRENEKILIILGNESKGLKEDILENSD 317

Query: 250 SMAHLHMPGI-------IKALNVSNAAAVALYITQNHF 280
              +++           I +LNV+N  ++ L    NHF
Sbjct: 318 YCVYINNLSYNENTQFHIDSLNVNNVCSIML----NHF 351


>gi|330469164|ref|YP_004406907.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328812135|gb|AEB46307.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 274

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 13/152 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L +V D    P NIG ++RSA AF   G+I T   +        ++++G+L  +P +R
Sbjct: 115 TMLTVVFDRPTSPGNIGTLVRSADAFGASGVIITGHAADVYDPKAVRASTGSLFALPVVR 174

Query: 192 ISNLTDALQKMHSWGFQT----IGL---SSDSKKPLEQEIKNDK--IALILGAEGKGLRP 242
           +     A Q + SWG       IG+    +D    L+    + +    +++G E  GL  
Sbjct: 175 VP----ARQAVLSWGVDVRAGGIGMNVVGTDELGALDVADYDFRQPTLIVIGNETTGLSS 230

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +E    +  + M G   +LN + AA V LY
Sbjct: 231 GWREACDQVVRIPMSGAASSLNAATAATVVLY 262


>gi|227501411|ref|ZP_03931460.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|306835564|ref|ZP_07468577.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
 gi|227077436|gb|EEI15399.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|304568564|gb|EFM44116.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 18/198 (9%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIG 148
           PV  V  +T+ ++ G + +H+GL  A + AP   P +  +   ++ + VL+ V D  NIG
Sbjct: 69  PVYEVSRETLAEVAGFD-MHRGLVAAADRAP--EPEVGEILEQARTIAVLEGVGDHENIG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-------LQK 201
           AI R A   + D ++     S +   +  +S   ++ H+  +  ++L          LQ 
Sbjct: 126 AIFRHAAGMNVDAVLLG---SGAADPLYRRSVRVSMGHVLRVPFAHLEGGFTTWQRSLQA 182

Query: 202 MHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +    F  I L+ + +     E     DK+A+++GAEG GL     +     A + M   
Sbjct: 183 LADASFTLISLTPNPQAVHLAEAMHGQDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPG 242

Query: 260 IKALNVSNAAAVALYITQ 277
             +LNV+ AAA++ Y  Q
Sbjct: 243 TDSLNVATAAAISFYERQ 260


>gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
           B-30929]
          Length = 256

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 29/257 (11%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARL----D 82
           +++ KMQS  +K R  S      + G H V  A+ +  + I QL+    + L  L    D
Sbjct: 15  KEWTKMQS--KKGRVKSG--EYVIEGWHIVDEAIRH-RQTIKQLMVVDESYLGDLPVDDD 69

Query: 83  WDANLPHPFPVK----TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
            +  L  P   K    T  PQ +  ++  E  H     E  P      D ++ + LL  L
Sbjct: 70  TEIFLITPEIAKHISSTETPQGVFAVLNTEDYH-----EQIP------DDLKGAWLL--L 116

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D++ DP NIG ++R+A A   +GI+  K  +   +  + +S  G+  H+  +   ++ + 
Sbjct: 117 DNIQDPGNIGTMVRTADAAGLNGIVFGKGSADLYNPKVVRSMQGSQFHMK-LFTGDILEW 175

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMP 257
           +      G +T G   + +     +I   K  ALI+G EG G+ PK  E      ++ M 
Sbjct: 176 MAAFKEAGVKTYGTELNDQAISYYDITPTKQFALIMGNEGNGVDPKILEKTDQNLYIPMN 235

Query: 258 GIIKALNVSNAAAVALY 274
           G  ++LNV+ A  + L+
Sbjct: 236 GEAESLNVAVATGILLF 252


>gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
          Length = 246

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D  +  Q+L++ D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G
Sbjct: 97  PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P +   +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P
Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     T    + + G  ++LNV+ A ++ LY
Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|28211878|ref|NP_782822.1| 23S rRNA methyltransferase [Clostridium tetani E88]
 gi|28204320|gb|AAO36759.1| 23S rRNA methyltransferase [Clostridium tetani E88]
          Length = 260

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++   L ++ D V DP N+G I+R+A A +  GI+ T+      +    +S+ G++ +IP
Sbjct: 107 LKEDGLYILADRVQDPGNMGTIIRTAHAANASGILITEGTVDVYNEKTLRSSMGSIFYIP 166

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET 247
            I    L D ++ +   GF+ +  S D+ K L + ++    + L +G EG G+  +    
Sbjct: 167 VIEDFKL-DKIKDLKLKGFKVLASSLDTNKSLYDLDLCKKNLILAVGNEGSGVSEEVYNI 225

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + MPG  ++LN   A ++ ++
Sbjct: 226 SDETFIIPMPGNAESLNAGVATSIIIF 252


>gi|300022376|ref|YP_003754987.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524197|gb|ADJ22666.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 269

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V   +  + L+ + DP N+G I+R+A A  C G+I         S    ++  G++  +P
Sbjct: 117 VNAGETWVALEEIRDPGNLGTIVRTADATGCAGVILVGTTCDPYSLDAVRATMGSIFAVP 176

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +++   +  +    +W    IG    +++      +  ++ +++G EG GL  +   + 
Sbjct: 177 IVKMER-SAFISLQRAWAGDVIGTHLTAREDFRSLYREPQL-IVMGGEGPGLSSEAAASC 234

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T +  + M G + +LN++ A  + LY
Sbjct: 235 TKLVKIPMAGKLDSLNLAVATGLMLY 260


>gi|183220443|ref|YP_001838439.1| putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910556|ref|YP_001962111.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775232|gb|ABZ93533.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778865|gb|ABZ97163.1| Putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 277

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 89/185 (48%), Gaps = 3/185 (1%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGA 149
           P+  +P +  +KI  ++     +A+   P      ++++ S+   +++++ V  P N+G 
Sbjct: 86  PIFELPRKIFEKISYRDRPDGLIAVAETPSAMVPWNSLQTSETNPILIIEGVEKPGNLGT 145

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A       +I T       +  + ++++G +  +P + I +LT+ L +    G++ 
Sbjct: 146 ILRTAEGAGVGLVIVTDPRIDLFNPNVVRASTGTIFTLP-VYIGDLTEVLTEFKKQGYKR 204

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             ++ + K         +K   + G+E  GL P  +E A +  +L M G   +LN++ + 
Sbjct: 205 YAVTPEGKTLYTSVNLKEKSVFLFGSEQYGLSPLAKELADTTLYLPMFGEADSLNLAMSC 264

Query: 270 AVALY 274
            + LY
Sbjct: 265 GIVLY 269


>gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 246

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D  +  Q+L++ D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G
Sbjct: 97  PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P +   +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P
Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     T    + + G  ++LNV+ A ++ LY
Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 257

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 109/227 (48%), Gaps = 8/227 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L G+H V  A+     K   ++AT+  +A  D+  N+PH  P   +  +    I G   
Sbjct: 31  LLDGLHLVEEAVK-AGAKFHAIMATEKQMA--DYLPNVPHGVPAFEISEEVAKHIAGTN- 86

Query: 110 VHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             QG+  E + L   T D +  +    ++LD + DP N+G ++R+A A    G++     
Sbjct: 87  TPQGIFAEIS-LPEKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGAGT 145

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-ND 227
           + + +  + ++  G+  H+  +   +L++ +  + +      G   + K    ++++ + 
Sbjct: 146 ADAFAPKVVRAMQGSQFHLEVLN-GDLSEWVAALAANNLPVYGSQLNEKAKSYRDVEPST 204

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  LI+G EG+G+  +  E  T+  ++ + G  ++LNV+ A  + ++
Sbjct: 205 QFGLIVGNEGQGMSAELAEKTTANLYIPIQGQAESLNVAIAGGILMF 251


>gi|223043735|ref|ZP_03613778.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
 gi|222442832|gb|EEE48934.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
          Length = 246

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 76/143 (53%), Gaps = 4/143 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +Q ++++D + DP N+G ++R+A A   D I+  K  +      + +++ G++ HIP I 
Sbjct: 104 AQQVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRASQGSIFHIP-IV 162

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           I  LT  + +     + T    + S K +E +    + AL+LG EG+G+  +  +  T  
Sbjct: 163 IKGLTTYINEFDGPVYGTALEDAVSFKEIEAQ---SRFALLLGNEGEGVNQELLQQTTQN 219

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + + G  ++LNV+ A ++ LY
Sbjct: 220 LIIPIYGKAESLNVAIAGSILLY 242


>gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308378747|ref|ZP_07483775.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308379893|ref|ZP_07488012.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308216360|gb|EFO75759.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308359254|gb|EFP48105.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308363164|gb|EFP52015.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
          Length = 230

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187
           V  ++ + VL+ VND  N+G+I R+A   S D ++  T    P     +  S   AL  +
Sbjct: 68  VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALL-V 126

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLE-QEIKNDKIALILGAEGKGLRPK 243
           PY R ++    L  +   GF+ + ++   +  K P     + +++IAL++GAEG GL   
Sbjct: 127 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 186

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +     + M     +LNV+ AAA+A Y
Sbjct: 187 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 217


>gi|281358057|ref|ZP_06244541.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281315430|gb|EFA99459.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 182

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALE 185
           D V   QL +VLD +   HN G I R A A     II    Y+P+     L K+A GA +
Sbjct: 21  DFVDVKQLCIVLDRLRSAHNTGNIFRIAEAVGAAEIIACG-YTPAPPHPKLEKTAMGADK 79

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEIKND-KIALILGAEGKGLRP 242
            +P   + +   A++ +   G++ I L+++         E+K +  +A++ G E  G+ P
Sbjct: 80  MVPCRVMPDSATAVRTLREEGYRMI-LAAECMPGSRFAWEMKYEFPLAIVFGNEALGVAP 138

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +T E    +  L M G   ++NV N+AA  LY
Sbjct: 139 ETLELVDGLVSLPMFGEKSSINVGNSAAAILY 170


>gi|189467568|ref|ZP_03016353.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
           17393]
 gi|189435832|gb|EDV04817.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
           17393]
          Length = 267

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 6/141 (4%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  R+++ ++V+D V D  NIGAI RSA A   D ++ T+      +    + + G++  
Sbjct: 114 DTCRDARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGSVFL 173

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPK 243
           +P+   + L   L  +   GF+T  + L+ +S    +  + ++ ++A+++G EG+GL P 
Sbjct: 174 VPW---TWLDGTLSDLARHGFRTAAMALTDNSISIADPVLTSEPRLAIVMGTEGEGLPPD 230

Query: 244 TQETATSMAHLHMPGIIKALN 264
           T   A  +  + M   + +LN
Sbjct: 231 TIAAADYVVRIPMAHGVDSLN 251


>gi|254468840|ref|ZP_05082246.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
 gi|207087650|gb|EDZ64933.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
          Length = 257

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 11/152 (7%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY---I 190
           + + LD V DP N+G ILR++ A    GI  +++ +   S    +++ G    +P    +
Sbjct: 114 MYLFLDKVQDPGNLGTILRTSQALGHKGIFLSEQCADPWSPKTLRASQGFQFQLPIYQNV 173

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ISNL        S GF  +    + +   +    + K  LILG+EG+G+  K ++ A  
Sbjct: 174 DISNLI-------SHGFSFVVADLNGQSVFDYNFSH-KTILILGSEGQGVTTKLKDIAHD 225

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              L M   +++LNV+ +AA+  Y   N F +
Sbjct: 226 EISLPMMNNVESLNVAVSAAIIGYQFLNQFNR 257


>gi|49483300|ref|YP_040524.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
 gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
 gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 246

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D  +  Q+L++ D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G
Sbjct: 97  PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P +   +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P
Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     T    + + G  ++LNV+ A ++ LY
Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|113476712|ref|YP_722773.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110167760|gb|ABG52300.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 261

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD + DP N+G I+R+AVA + DG+  ++         + ++++G   ++      NL
Sbjct: 112 IVLDKIQDPGNLGTIIRTAVATNIDGLFVSRDSVDLSHPKVVRASAGEWFNLHKAISENL 171

Query: 196 TDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            + + K+ S G Q +    +S     E +++   I ++LG EG G+     + A     +
Sbjct: 172 KNEILKLQSQGLQVLATVPNSNINYWEIDLRKPTI-IVLGNEGSGISKDLIDLADYSVKI 230

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            +   +++LNV+ +AA+ LY  Q  
Sbjct: 231 PLSNGVESLNVAVSAAIILYEIQRQ 255


>gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 246

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D  +  Q+L++ D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G
Sbjct: 97  PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P +   +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P
Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVTYKEVTSSDSFALLLGNEGEGVNP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     T    + + G  ++LNV+ A ++ LY
Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|269925611|ref|YP_003322234.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789271|gb|ACZ41412.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 180

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 127 DAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDG---IITTKRYSPSESAVLAK 178
           D +R  Q     L+ +L  + DP N+GA  R  +A  C+    I+T K  +P +S + A 
Sbjct: 17  DFLRGVQRPEVDLVFLLQDLEDPVNVGAAFR--IADGCEASEIILTGKTPTPPDSTI-AG 73

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237
              GA   IP+  + +  +AL ++   G+    +  ++   P       D++ L++G E 
Sbjct: 74  VGRGAHRRIPWRYVEHADEALVELKGMGYMACAIEVAEGAVPYYSLKYPDRVCLVVGHEY 133

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+  +T     +  ++ M G IK+LNV  A AV  +
Sbjct: 134 HGVTTRTLSVCDNAVYIPMYGKIKSLNVHVALAVVAF 170


>gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|13880456|gb|AAK45146.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
          Length = 242

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187
           V  ++ + VL+ VND  N+G+I R+A   S D ++  T    P     +  S   AL  +
Sbjct: 80  VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 138

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLE-QEIKNDKIALILGAEGKGLRPK 243
           PY R ++    L  +   GF+ + ++   +  K P     + +++IAL++GAEG GL   
Sbjct: 139 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 198

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +     + M     +LNV+ AAA+A Y
Sbjct: 199 ALRISDVRVRIPMSRGTDSLNVATAAALAFY 229


>gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122]
          Length = 246

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D  +  Q+L++ D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G
Sbjct: 97  PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P +   +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P
Sbjct: 155 SVFHLP-VMTQDLDTFITQFNGPVY---GTALENAVTYKEVTSSDSFALLLGNEGEGVNP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     T    + + G  ++LNV+ A ++ LY
Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|282854676|ref|ZP_06264011.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|282582258|gb|EFB87640.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|314981978|gb|EFT26071.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA3]
 gi|315090889|gb|EFT62865.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA4]
          Length = 277

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +P+ R+ +
Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179

Query: 195 LTDALQKMHSWGFQT--IGLSSD--SKKPLEQEIKND--KIALILGAEGKGLRPKTQETA 248
               L ++   GF    + LS D  S      +++ +  K+AL++G EG GL       A
Sbjct: 180 WAGGLDELRDHGFTVAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQA 239

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G + +LNV+ AAAVA Y
Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265


>gi|296164543|ref|ZP_06847114.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900143|gb|EFG79578.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 265

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V   + +P N G ++R A A    G+I         +    ++++G++  IP +  
Sbjct: 110 RLIAVAVEIGEPGNAGTVIRLAAAMGAHGVILGGHSVDPYNGKCLRASTGSIFSIPVVTE 169

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
            ++  AL  +   G Q +  + D +K L++  ++     A + G E +GL       A  
Sbjct: 170 PDVPAALDALRGAGLQVLATTVDGEKRLDESADLLGRPTAWLFGPESRGLPSDVAGAADH 229

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G  ++LNV++AAA+ LY
Sbjct: 230 RMRIPMSGGAESLNVASAAAICLY 253


>gi|315658555|ref|ZP_07911427.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
 gi|315496884|gb|EFU85207.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
          Length = 246

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 17/239 (7%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           +K R   +     + G+H +  A   N   +++F +   +   A +D+       F +  
Sbjct: 19  KKKRERDKTGQALIEGIHLIEEAYQSNLTIKQLFIIEPERTEQALIDY---AEETFQINM 75

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
              +T+   +  +          A +  P  D     Q+L++ D + DP N+G ++R+A 
Sbjct: 76  KVAETLSGTITPQGFF-------AVIEKPNYDVTHAKQVLLI-DRIQDPGNLGTLIRTAD 127

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D I+  K  + +    + +++ G++ HIP +  ++L   +++     F T   ++ 
Sbjct: 128 AAGIDLIVMEKGTADAYQDKVLRASQGSVFHIPVVT-ADLQGFIKQFEGPVFGTALENAV 186

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S K L+ +   +  AL+LG EG G+     E  T    + + G  ++LNV+ A ++ LY
Sbjct: 187 SYKNLDPQ---ETFALLLGNEGDGVNNALLEHTTKNLIIPIYGKAESLNVAIAGSILLY 242


>gi|314923774|gb|EFS87605.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL001PA1]
 gi|314966212|gb|EFT10311.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA2]
 gi|315095102|gb|EFT67078.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL060PA1]
 gi|315104331|gb|EFT76307.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA2]
 gi|327328119|gb|EGE69888.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL103PA1]
          Length = 277

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +P+ R+ +
Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179

Query: 195 LTDALQKMHSWGFQT--IGLSSD--SKKPLEQEIKND--KIALILGAEGKGLRPKTQETA 248
               L ++   GF    + LS D  S      +++ +  K+AL++G EG GL       A
Sbjct: 180 WAGGLDELRDHGFTVAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQA 239

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G + +LNV+ AAAVA Y
Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265


>gi|229815427|ref|ZP_04445759.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
           13280]
 gi|229808960|gb|EEP44730.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
           13280]
          Length = 303

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + VL+ + D  N+GAI RSA A + DGI+ +           A+ + G +  +P+ RI +
Sbjct: 138 VCVLEGIVDHSNVGAIFRSAAALNVDGILVSPTCVDPLYRRSARVSMGTVFQVPWTRIGS 197

Query: 195 LT-----DALQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQE 246
                  D  + +   GF    + LS DS    +  + + ++ A+ +G EG GL+ +T  
Sbjct: 198 EARAWPYDGFEVLKGAGFTCSAMALSDDSVSLDDPSLLDIERHAIFMGTEGTGLQARTIA 257

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                  + M   + +LNV+ A+AVA +
Sbjct: 258 GCDKTIRIPMAHGVDSLNVAAASAVAFW 285


>gi|297182196|gb|ADI18367.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
          Length = 260

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 1/149 (0%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +D    +  L+VL  V+DP N G ++RSA AF   G++      P     L ++A+G+  
Sbjct: 106 MDLATTTGPLLVLAEVSDPGNAGTLMRSAEAFGATGVVVAGGVDPYNPK-LVRAAAGSSF 164

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P+  + +   AL+ +   G+              +   +  +A+ILG E  GL  +  
Sbjct: 165 RVPFAVVDDPMAALRILEEAGYGCWATVPRGGLSPAEVPSDGPVAIILGNEPHGLSDEVV 224

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   +   G +++LNV+ A ++AL+
Sbjct: 225 AACVGTVSVPTVGGVESLNVAIAGSIALH 253


>gi|295104633|emb|CBL02177.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
          Length = 275

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195
           VL+ + D  N+GAI RSA A + D ++ T            + + G +  +P+ +I    
Sbjct: 125 VLEGIVDSTNVGAIFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCP 184

Query: 196 ----TDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETA 248
                +   ++H+ GF+T  ++ SD    ++        K+A++LG EG GL   T    
Sbjct: 185 ADWPENGSAQLHALGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAAC 244

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   + +LNV+ A+AVA +
Sbjct: 245 DYTVKIPMSHGVDSLNVAAASAVAFW 270


>gi|303327802|ref|ZP_07358242.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
 gi|302862163|gb|EFL85097.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
          Length = 239

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +VL +++DPHN+ AI RS  AF    +      +P  + +  K+++ A + +  
Sbjct: 63  RQNDLTLVLANIHDPHNVSAIYRSCDAFGLSKVHLYYTNTPFPT-LGRKTSASARKWVES 121

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R  N  D ++ +   GFQ +  S S++ +PL         A+I+G E  G+  +    A
Sbjct: 122 ERHKNSADLMRTLRGQGFQVLATSCSETARPLRDWDFIRPTAVIMGNEHSGVEEELLSLA 181

Query: 249 TSMAHLHMPGIIKALNVS 266
               ++ M G+I++ NVS
Sbjct: 182 DGQLYIPMYGMIQSFNVS 199


>gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 246

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 80/147 (54%), Gaps = 6/147 (4%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHI 187
           +  +Q ++++D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G++ H+
Sbjct: 101 ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQGSVFHL 159

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P +   +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P+    
Sbjct: 160 P-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAH 215

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
            T    + + G  ++LNV+ A ++ LY
Sbjct: 216 TTQKLIIPIYGKAESLNVAIAGSILLY 242


>gi|94986333|ref|YP_605697.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
           DSM 11300]
 gi|94556614|gb|ABF46528.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
           DSM 11300]
          Length = 216

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 12/158 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAK---SASGA 183
           A R   L +++D VN PHN  AILR+     CD + + T    P +S VL     ++  A
Sbjct: 14  ARRQPTLTVLMDEVNKPHNFSAILRT-----CDAVGVLTAHAVPPKSGVLPTFDATSGSA 68

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            + +   R  +   A++++ + G Q +   LS  S    E +       ++LGAE  G+ 
Sbjct: 69  HKWVAVQRQPDAVTAVRQLQAAGMQVLATHLSQRSLDYREPDYTR-PTCVLLGAEKWGVS 127

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  E A +   + M G++++LNVS AAA  L+  Q  
Sbjct: 128 DEAAEIADANIVIPMFGMVQSLNVSVAAATILFEAQRQ 165


>gi|82702991|ref|YP_412557.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
 gi|82411056|gb|ABB75165.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
          Length = 279

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 20/266 (7%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA--ALNNPSRKIFQLLATKNALARLD 82
           R++  +K++    + SR         L G+H V A  AL  P + +      +N   R  
Sbjct: 7   RDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALGKPEKLVASESGRENPEIRFL 66

Query: 83  WD----------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN- 131
            +              H      V P  + + V       GL +   P+ SP    ++  
Sbjct: 67  LEKVTKVTQVTKGGGSHREAAAIVLPDLLFREVSTVKTATGL-MAIVPIPSPEAIPLKKR 125

Query: 132 ---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                  ++L+ + DP N+G+ILRSA A     +  +   + + S    ++A GA  H  
Sbjct: 126 GQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGA--HF- 182

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +RI    +  +   ++G + I    D+KK L Q   +  +A + G EG GL  +  + A
Sbjct: 183 LVRIHERANLAEVARTFGGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDELLQVA 242

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + MPG  ++LN + AAAV  +
Sbjct: 243 HERITIPMPGDAESLNAAAAAAVCFF 268


>gi|78185144|ref|YP_377579.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
 gi|78169438|gb|ABB26535.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
          Length = 229

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R + L ++L+HV  PHN+ AILR     SCD +   + ++ S S        +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILR-----SCDAVGALEAHAVSFSGRPRTYNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P     ++  A++ + + GF+  G  L +++K   + +      A +LGAE  GL  + 
Sbjct: 73  VPLNDHPDIETAIKVLKAKGFRLYGTHLGTNAKDYRDCDFTG-PTAFVLGAEKWGLSDQA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++       + M G++++LNVS A A  L+
Sbjct: 132 RDLMDEALFIPMRGMVQSLNVSVATATLLF 161


>gi|300933427|ref|ZP_07148683.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 278

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 110/243 (45%), Gaps = 17/243 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G + V++ALN+ S  + ++  T++A  R     +     P+  +  +  D +  +     
Sbjct: 36  GENAVTSALNHGS--VIEIFVTESAAQRFSSLLDATSSTPISFISDRAADHL-SETVTST 92

Query: 113 GL-AL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           GL AL   + + L +    A +N  L+ V     +P N G ++R + A    G++   + 
Sbjct: 93  GLFALCNSQLSDLTAVVESAKKNLPLIAVPVETGEPGNAGTLIRVSDALGAAGVVFAGQS 152

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD---------SKKP 219
                    ++++G++ H+P  R + + D + ++H  GF  +  + D         + +P
Sbjct: 153 VDPLGGKAVRASAGSIFHLPVAREAGVADVIDRLHEEGFTVMATAMDGDVSLEEASTSEP 212

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E+ I     A + G E  GL    Q+ A     + M G  +++N++ AA++ LY + N 
Sbjct: 213 GEKPILAQPTAWLFGNEAHGLG-HWQDLADLRISIPMRGRAESMNLATAASICLYQSANA 271

Query: 280 FAK 282
            A+
Sbjct: 272 LAR 274


>gi|221104729|ref|XP_002169584.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog, partial [Hydra magnipapillata]
          Length = 183

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RSA  F  D II  ++ S   +A ++K +SGA+E        ++   L+ +
Sbjct: 36  DPMNLGAIIRSATYFGVDKIIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLKDL 95

Query: 203 HSWGFQTIG-LSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHL--- 254
            ++ +  IG ++ D  +       + +++    L++G EG G+ P      T +  +   
Sbjct: 96  LNYDWNLIGTVTKDYTQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTKLVTIPSF 155

Query: 255 --HMPGIIKALNVSNAAAVALY 274
              +P  + +LNVS A  + L+
Sbjct: 156 NDRLPEGLDSLNVSVATGILLH 177


>gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
 gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
          Length = 259

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 118/276 (42%), Gaps = 38/276 (13%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EK+ S+K++         +++KK+Q+  +K R   Q     L G H V+ AL    R + 
Sbjct: 3   EKLTSVKNARV-------KEWKKLQT--RKGR--KQQGRYLLEGWHLVNEALQ-ADRGLH 50

Query: 70  QLLATKNALA-RLDWDANLPHPFPV---------KTVPPQTIDKIVGKEAVHQGLALETA 119
           +L+ TK  LA   D  A     + V         +TV PQ I  +     +HQ       
Sbjct: 51  ELIGTKEELAAHPDIVARFKEVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQ------- 103

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                   A   S   + LD V DP N+G ++R+A A    G++     +   S  + +S
Sbjct: 104 -------VATDLSGAWLFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRS 156

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGK 238
             G+  H+      +L    + +   G+   G   + + K           AL++G EG+
Sbjct: 157 MQGSQFHLALYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGR 215

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+  +  +  T+  ++ M G  ++LNV+ +A + ++
Sbjct: 216 GMSEELLKQTTANLYIPMRGQAESLNVAVSAGILMF 251


>gi|152979660|ref|YP_001345289.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes
           130Z]
 gi|150841383|gb|ABR75354.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes
           130Z]
          Length = 361

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           V  + ++++ G E  H G+ +   +  P  L   LD  R    L++LD+V +P NIG IL
Sbjct: 177 VDREELERVSGTEH-HGGICMLVKKRHPFTLKGYLDITRKEDSLVLLDNVRNPQNIGGIL 235

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+   +    +IT +    ++SA   + A G  E +  ++I++   AL ++   G+Q I 
Sbjct: 236 RTCAVYGVKALITAE-PELTQSANAMRVAEGGAEFVNILQINDTEQALAQLRQAGYQVIF 294

Query: 212 LSSDSK-KPLEQEIKNDKIALIL 233
            S+D + K + + ++  K   +L
Sbjct: 295 TSTDKQAKSMNKLMRMKKAVFVL 317


>gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 259

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 28/257 (10%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + ++K+Q+  +K R  S  E   L G H V  A+ +   K+  ++ T   LA  +    L
Sbjct: 16  KAWQKLQT--KKGRQAS--ETYLLDGWHLVQEAIQHDG-KLHAVMGTAEQLA--EHQEEL 68

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-----MVLDHVN 142
           P   PV  +    I K +      QG+  E +    P+  A R  Q +     + LD + 
Sbjct: 69  PLGVPVFEIT-DDIAKKLSDLVTPQGIFAEVS---LPS--ATREPQFIHDGAWLFLDAIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           DP N+G ++R+A A    G++    +   YSP       ++  G+  H+      NL D 
Sbjct: 123 DPGNVGTMVRTADAAGFTGVVFGHGSVDPYSPKA----LRAMQGSQFHLT-TTTGNLADW 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                  G    G   D +      +    + ALI+G EG+G++P+  +  T   ++ + 
Sbjct: 178 TASFTQNGMNVYGTQLDPEAADVFTVPAQTQFALIMGNEGQGMQPELAKMTTQNLYIPIS 237

Query: 258 GIIKALNVSNAAAVALY 274
           G  ++LNV+ AA +A++
Sbjct: 238 GQAESLNVAVAAGIAMF 254


>gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 255

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 28/266 (10%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   KK+   NQK ++     +  + G H    A+    +K   +L T+ AL +++ D 
Sbjct: 8   NNATIKKLAKLNQK-KYRDDEGSYLIEGFHLFEEAIK-AGKKYQYILGTEEALDKVNEDY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHV 141
           NL      K V    I+K + +       + E   +L   +D  R    N    ++LD++
Sbjct: 66  NLE--LDGKNVI--LINKAIARHLSSTKNSQEIFMVLK--IDQPREFPFNYGKWVLLDNL 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-----AKSASGALEHIPYIRISNLT 196
            DP N+G I+R+A A   DG++ +     SESA L      ++  G+  HI  I+  +L 
Sbjct: 120 ADPGNVGTIIRTADAAGFDGVVLS-----SESADLYNPKTQRAMQGSQFHIELIK-RDLA 173

Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           DA+               D S K L+   K  ++ALI+G E  G+       +    ++ 
Sbjct: 174 DAITDFQDAAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIP 233

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           + G  ++LN + AA + +Y    HFA
Sbjct: 234 IKGKAESLNAAVAAGIMIY----HFA 255


>gi|332881584|ref|ZP_08449233.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680582|gb|EGJ53530.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 180

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLDHV   +N+G++ RS+ AF    +      +      + K+A GA + + ++   
Sbjct: 29  LIVVLDHVRSLYNVGSVFRSSDAFRVASVYLCGITATPPQVEIHKTALGAEDSVNWVYYE 88

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
              DA++ + + G++   +       + Q+ + D   K A+ILG E KG++ +  +    
Sbjct: 89  RTQDAVEHLKAEGYEVWAVEQVEGSIMLQDFQPDKAKKYAIILGNEVKGVQQEVVDQCDG 148

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 149 CIEIPQFGTKHSLNVSVTAGILVW 172


>gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 283

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 107/240 (44%), Gaps = 13/240 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + + +++         +   GV  V   L +P    + + A      R++    LP 
Sbjct: 41  FRDLSTADRRPDRPGGRGLVIAEGVVVVERLLASP----YPVRAVLGVRRRVEALGELPA 96

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P  V +     + ++VG   +++G+  A + AP   P+LD +   + L VL+ V D  N+
Sbjct: 97  PAYVASA--DVMARVVGFH-LNRGVLAAADRAP--QPSLDELATGRRLAVLEGVGDHENL 151

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+ R+A A   DG++     S        + + G +  +P+  + +    L+ +   GF
Sbjct: 152 GALFRNAAALGIDGVVLGPGCSDPLYRRSVRVSMGHVLRVPFAAVDDWPGGLKLLQDKGF 211

Query: 208 QTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               L+    S +  +  ++  ++A++LG+EG GL  +    A     + M   + +LNV
Sbjct: 212 VVAALTPRVGSVELPDAGLRGRRVAVLLGSEGPGLTEEAIGAADVAVRIPMSPGVDSLNV 271


>gi|20799558|gb|AAM28546.1|AF494517_1 putative tRNA/rRNA methyl transferase [Tomato big bud phytoplasma]
          Length = 210

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 6/148 (4%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S  +++LD + DP N G +LRSA AF    I  +       +    + + GA+ ++ + R
Sbjct: 51  SDKILILDDIQDPSNAGLLLRSACAFGFKNIFFSNNSVDIYNEKTIQVSQGAIFNLDFFR 110

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQE 246
             +L + L  +    +  IG        L   + N      KIALILG EG+G+   +++
Sbjct: 111 -GDLANFLSFLKKNDYFVIGTCGHENNFLSNNLINICSKYYKIALILGNEGQGISVISRQ 169

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  +  +    ++++LNV+ A ++ ++
Sbjct: 170 KSDYLIAIPTTNLVESLNVAVAGSIIMF 197


>gi|83720773|ref|YP_442566.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83654598|gb|ABC38661.1| RNA methyltransferase, TrmH family [Burkholderia thailandensis
           E264]
          Length = 281

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 115/266 (43%), Gaps = 21/266 (7%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DS  A   R++  YK++++    +    +     L G+H  SA L+   +    ++ T  
Sbjct: 18  DSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVV-TDG 76

Query: 77  ALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEA-VHQGLAL-----ETAPLLSPTLDA 128
           AL+  +    +    P  V T+P    D + G+ + V  G+ L       AP L      
Sbjct: 77  ALSHAEARETVARIEPARVVTLP----DALFGQLSNVVNGVGLLLLVARPAPALPE---- 128

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R S   +VLD V D  N+G+ILRSA A     +      + + S+ + +SA GA  H  
Sbjct: 129 -RVSNTSVVLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGA--HF- 184

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            + I    DA   +           S   + +        +A + G EG G+  + ++ A
Sbjct: 185 LLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAA 244

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T    +  PG +++LNV+ AAAV L+
Sbjct: 245 THRVTIPQPGGMESLNVAAAAAVCLF 270


>gi|33862541|ref|NP_894101.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640654|emb|CAE20443.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
          Length = 245

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---K 178
           L   LD  R + L ++L+HV  PHN+ AILR     SCD +   + ++ + S  L     
Sbjct: 27  LKAVLD-CRMADLTVLLEHVEKPHNLSAILR-----SCDAVGVLEAHAVNYSGRLPTFNS 80

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAE 236
           +A G+ + IP    S++  A++ +   GF+  G  L  +++   + +   +  A +LGAE
Sbjct: 81  TAQGSQKWIPLKEHSSIEVAVKAIKDSGFRLYGTHLGGNARDYRDCDF-CEPTAFVLGAE 139

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL             + M G++++LNVS AAA  L+
Sbjct: 140 KWGLSKLATPLMDEGIFIPMSGMVQSLNVSVAAATLLF 177


>gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
 gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R + L ++++HV  PHN+ AILR     SCD +   + ++ S S        +A G+   
Sbjct: 18  RMADLTVLVEHVEKPHNLSAILR-----SCDAVGVLEAHAVSLSGRPRTFNSTAQGSQRW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P     ++T A+  + + GF+  G  L  D++   + +      A +LGAE  GL    
Sbjct: 73  VPLRDHPDITAAVHHLKAQGFKLYGTNLGVDARDYRDCDFTG-PCAFVLGAEKWGLSDAA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS A A  L+
Sbjct: 132 TALMDQAVFIPMRGMVQSLNVSVATATLLF 161


>gi|124023764|ref|YP_001018071.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
 gi|123964050|gb|ABM78806.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---K 178
           L   LD  R + L ++L+HV  PHN+ AILR     SCD +   + ++ + S  L     
Sbjct: 11  LKAVLDC-RMADLTVLLEHVEKPHNLSAILR-----SCDAVGVLEAHAVNYSGRLPTFNS 64

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAE 236
           +A G+ + IP    S++  A++ +   GF+  G  L  +++   + +   +  A +LGAE
Sbjct: 65  TAQGSQKWIPLKEHSSIEVAVKAIKESGFRLYGTHLGGNARDYRDCDF-CEPTAFVLGAE 123

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL             + M G++++LNVS AAA  L+
Sbjct: 124 KWGLSELATPLMDEGIFIPMCGMVQSLNVSVAAATLLF 161


>gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
 gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
          Length = 229

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R + L ++L+HV  PHN+ AILR     SCD +   + ++ S          +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILR-----SCDAVGALEAHAVSFDGRPRTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P     +   A++ +   GF+  G  L  D+K   E +      A +LGAE  GL  + 
Sbjct: 73  VPLHDHPDTETAIRHLKGEGFRLYGTHLGVDAKDYRECDF-TVPTAFVLGAEKWGLTDQA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++       + M G++++LNVS A A  L+
Sbjct: 132 RDLMDEALFIPMRGMVQSLNVSVATATLLF 161


>gi|314968474|gb|EFT12572.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA1]
          Length = 269

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +P+ R+ +
Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248
               L ++   GF    ++         E   D      K+AL++G EG GL       A
Sbjct: 180 WAGGLGELRDHGFTVAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQA 239

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G + +LNV+ AAAVA Y
Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265


>gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 258

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 4/142 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRIS 193
           L++LD + DP N+G ++R+A A   D +I  +    P    VL ++  G++ H+P I   
Sbjct: 115 LLLLDAIQDPGNLGTMIRTADAAGFDAVILGQGCVDPYNDKVL-RATQGSIWHLPVIHY- 172

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMA 252
           +L  A+  + +     +  +      +  ++K +DK+ALI+G EG G+     + A    
Sbjct: 173 DLKAAIPALQATKIPVLATALHKDAQIYSDLKLDDKVALIMGNEGAGVAGDLIQAADHSV 232

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
           ++ M G  ++LNV+ A  + L+
Sbjct: 233 YIPMLGQAESLNVAVATGILLF 254


>gi|258406290|ref|YP_003199032.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
           DSM 5692]
 gi|257798517|gb|ACV69454.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
           DSM 5692]
          Length = 202

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 4/149 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L +V+++++DPHN+ AI+RS  AF    +     Y+      L + AS +    
Sbjct: 24  ARRQKDLTLVMNNIHDPHNVAAIMRSCDAFGVPDVHLL--YTSEAFPALGRRASASARKW 81

Query: 188 PYIRISNLTDALQ-KMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                   ++AL   +   G + +  S S S +PL +       A++LG E +G+ P  +
Sbjct: 82  VGRHHHTSSEALAGHLRDHGMRILSTSCSPSARPLPEWEFTSPTAIVLGNEHRGVDPALR 141

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   + M G++++ NVS AAA+ LY
Sbjct: 142 SHIDGELFIPMQGMVQSFNVSVAAAIILY 170


>gi|300776744|ref|ZP_07086602.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300502254|gb|EFK33394.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 249

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 9/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLA--LETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           VP + +++   K   HQG+   +   P      + P L     +  L++LD + D  N G
Sbjct: 53  VPVEKLNRFTRKN--HQGVVAFISDVPFHKVEDIVPQLFEQGKTPFLLILDRLTDVRNFG 110

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A     D +I  ++ +   ++   K+++GA+ +I   + +NL   +  +   G  
Sbjct: 111 AICRTAECVGIDAVIIPEKGAAPINSDAIKTSAGAIYNIKICKENNLAHTVDFLQQSGIS 170

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
               S  ++K +      +  A+++G E  G+  +    A     L + G  ++LNVS A
Sbjct: 171 VYAASEKAQKLIYDVNMTEPCAIVMGNEETGISKEVLHHADEKIKLPIEGKTQSLNVSVA 230

Query: 269 AAVALY 274
               LY
Sbjct: 231 CGAILY 236


>gi|282599849|ref|ZP_05972117.2| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282567380|gb|EFB72915.1| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 226

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A+R   L + L+ ++ PHN+ AI+RSA A    GI       P +   L+  SA+G+   
Sbjct: 3   AMRQPDLTLCLEEIHKPHNVSAIVRSADAI---GIHQIHAIWPDQHVKLSVSSAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +  I  S+  DA+ ++ + G Q +  +        +EI   +   +++G E KG+  K  
Sbjct: 60  VKVISHSSTEDAIAQIKAQGMQVLATNLSEHAVDFREIDYTRPTCIMMGQEKKGISQKAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ +Y  Q  
Sbjct: 120 ALADQHIIIPMAGMVQSLNVSVASALIMYEAQRQ 153


>gi|163754906|ref|ZP_02162027.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
 gi|161324973|gb|EDP96301.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
          Length = 171

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 4/152 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +V D V++  NIG++ R   AF  + II      P     + K++    + +P+   +
Sbjct: 18  ITLVSDQVSNAPNIGSLFRICDAFGVEKIIFCGDNIPVFGRRMTKTSRATEKVVPFEITT 77

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           ++   + K+   G+  I L           I   K +KIAL++G E  G+ P+T   +  
Sbjct: 78  DIHAVVSKLKDHGYTIISLEITENSQSIHTIDFSKYEKIALVIGDENFGVNPETIYESDV 137

Query: 251 MAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
           + H+ M G   ++NV  A  + LY IT+ H  
Sbjct: 138 VMHIDMFGQNSSMNVVQATNIVLYEITRQHLV 169


>gi|160943165|ref|ZP_02090402.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445634|gb|EDP22637.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
           M21/2]
          Length = 275

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195
           VL+ + D  N+GAI RSA A + D ++ T            + + G +  +P+ +I    
Sbjct: 125 VLEGIVDSTNVGAIFRSAAALNMDAVLITPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCP 184

Query: 196 ----TDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETA 248
                +   ++H+ GF+T  ++ SD    ++        K+A++LG EG GL   T    
Sbjct: 185 ADWPENGSAQLHALGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAAC 244

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   + +LNV+ A+AVA +
Sbjct: 245 DYTVKIPMSHGVDSLNVAAASAVAFW 270


>gi|50843004|ref|YP_056231.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
 gi|289426359|ref|ZP_06428102.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|295131075|ref|YP_003581738.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|50840606|gb|AAT83273.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
 gi|289153087|gb|EFD01805.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|291376146|gb|ADE00001.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|313763557|gb|EFS34921.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA1]
 gi|313793949|gb|EFS41973.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA1]
 gi|313801336|gb|EFS42587.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA2]
 gi|313811547|gb|EFS49261.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA1]
 gi|313813395|gb|EFS51109.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA1]
 gi|313816737|gb|EFS54451.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA1]
 gi|313829433|gb|EFS67147.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA2]
 gi|313839942|gb|EFS77656.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL086PA1]
 gi|314914711|gb|EFS78542.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA4]
 gi|314919328|gb|EFS83159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA1]
 gi|314920763|gb|EFS84594.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA3]
 gi|314930642|gb|EFS94473.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL067PA1]
 gi|314954402|gb|EFS98808.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA1]
 gi|314957514|gb|EFT01617.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA1]
 gi|314963698|gb|EFT07798.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA1]
 gi|315079548|gb|EFT51541.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA2]
 gi|315081223|gb|EFT53199.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL078PA1]
 gi|315099183|gb|EFT71159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA2]
 gi|315100333|gb|EFT72309.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA1]
 gi|315106854|gb|EFT78830.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA1]
 gi|315108983|gb|EFT80959.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA2]
 gi|327334215|gb|EGE75929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL097PA1]
 gi|327452027|gb|EGE98681.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL092PA1]
 gi|327454935|gb|EGF01590.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA3]
 gi|327457778|gb|EGF04433.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA2]
 gi|328755231|gb|EGF68847.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA1]
 gi|328758289|gb|EGF71905.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA2]
          Length = 269

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +P+ R+ +
Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248
               L ++   GF    ++         E   D      K+AL++G EG GL       A
Sbjct: 180 WAGGLGELRDHGFTVAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQA 239

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G + +LNV+ AAAVA Y
Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265


>gi|315633532|ref|ZP_07888822.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315477574|gb|EFU68316.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 358

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)

Query: 103 KIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           K+ G E  H G+ +   +  P  L   LD       L++LD+VN+  NIG ILR+   F 
Sbjct: 181 KVSGTEH-HGGICMLVKKAHPFTLQGYLDVPHQEDCLVLLDNVNNAQNIGGILRTCAFFG 239

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK- 217
              I+     S + SAV  + A G  E++  +  ++  +AL ++   G+Q + +SSD   
Sbjct: 240 VKNIVVENAESLN-SAVTLRVAEGGAEYVRVLETNDTRNALSQLRQAGYQILHVSSDENA 298

Query: 218 KPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273
             L++ ++KN  + ++  +  K L  K+ E       L     +K  LNVS  A + L
Sbjct: 299 TALDKVQLKNKTVFVLSESTTKALSEKSDE----QVRLAFASPVKNGLNVSVNAGILL 352


>gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|148720616|gb|ABR05241.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis F11]
          Length = 288

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187
           V  ++ + VL+ VND  N+G+I R+A   S D ++  T    P     +  S   AL  +
Sbjct: 126 VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHAL-LV 184

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPK 243
           PY R ++    L  +   GF+ + ++         E    + +++IAL++GAEG GL   
Sbjct: 185 PYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAA 244

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +     + M     +LNV+ AAA+A Y
Sbjct: 245 ALWISDVRVRIPMSRGTDSLNVATAAALAFY 275


>gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
 gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
          Length = 787

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 42/179 (23%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE------SAVLAKSASGALEHI 187
           ++++LD + +P NIGAI+RSAV F  + +I    +          SA   +S+ GA+E  
Sbjct: 507 VVLLLDGIENPQNIGAIIRSAVLFGVESVIFVNEFDKKTGSINPYSAESYRSSRGAVE-- 564

Query: 188 PYIRISNL------TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKN-- 226
            Y  IS L       + L +    G++ +  +S             +  KPL+   KN  
Sbjct: 565 -YCNISQLYLRRDAAEVLDEFVENGWEVVTTASNKLIDDNADNGIVEQFKPLKSLTKNIS 623

Query: 227 ------------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                         I L+LG+E KG+     + +T    +   G+I++LNVS A+++ L
Sbjct: 624 LYSDESNRVLGLKPIVLVLGSETKGISRTISKKSTVSISIPGTGLIESLNVSQASSIIL 682


>gi|221106776|ref|XP_002159774.1| PREDICTED: similar to rRNA methyltransferase 1, mitochondrial,
           partial [Hydra magnipapillata]
          Length = 227

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RSA  F  D II  ++ S   +A ++K +SGA+E        ++   L+ +
Sbjct: 80  DPMNLGAIIRSATYFGVDKIIVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLKDL 139

Query: 203 HSWGFQTIG-LSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHL--- 254
            ++ +  IG ++ D  +       + +++    L++G EG G+ P      T +  +   
Sbjct: 140 LNYDWNLIGTVTKDYTQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLITSICTKLVTIPSF 199

Query: 255 --HMPGIIKALNVSNAAAVALY 274
              +P  + +LNVS A  + L+
Sbjct: 200 NDRLPEGLDSLNVSVATGILLH 221


>gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
 gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
 gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
 gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
 gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115]
 gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
 gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
 gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
 gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
 gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
 gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
 gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
 gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
 gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
 gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
 gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
 gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
 gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315]
 gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721594|dbj|BAF78011.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
 gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
 gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
 gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
 gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115]
 gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
 gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
 gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
 gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
 gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
 gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
 gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
 gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
 gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981]
 gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
 gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
 gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
 gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21193]
 gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 246

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 80/147 (54%), Gaps = 6/147 (4%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHI 187
           +  +Q ++++D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G++ H+
Sbjct: 101 ISKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQGSVFHL 159

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P +   +L   + + +   +   G + ++    ++   +D  AL+LG EG+G+ P+    
Sbjct: 160 P-VMTQDLDTFITQFNGPVY---GTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAH 215

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
            T    + + G  ++LNV+ A ++ LY
Sbjct: 216 TTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|309775950|ref|ZP_07670942.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916232|gb|EFP61980.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 161

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 127 DAVRNSQLLMVL-DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           D  ++ Q+ + L + V DP N G ILR+  A  CDG+I   R   S + V+ K+++GA E
Sbjct: 3   DVCKSEQVFLALIEGVEDPFNFGYILRTLYAAGCDGVIIPPRNWTSAAGVVTKASAGASE 62

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           ++  I  +++   LQ+M       +     +   L       ++ L +G E +GL    Q
Sbjct: 63  YLNLIIANDMDALLQEMKQKDITLVCGQRSNAISLYAYTFPQRVCLAIGGEMRGLSKSVQ 122

Query: 246 ETATSMAHLHMP 257
               S  +L++P
Sbjct: 123 --GHSDQNLYIP 132


>gi|297626644|ref|YP_003688407.1| RRNA methylase family protein (tRNA/rRNA methyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922409|emb|CBL56981.1| RRNA methylase family protein (TRNA/rRNA methyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 269

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV  V     ++I G   VH+G       +++ ++  +     L+V + + D  N+GAI+
Sbjct: 78  PVYVVSEDLAEQITGFH-VHRGALASFKRIIAWSMHDLLAMDRLVVCEDIVDHTNVGAII 136

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A     DG++   R +        K++ G++  +P+ R+ +  D L  +   GF    
Sbjct: 137 RCAAGLGWDGVLLAPRAADPLYRRAIKTSMGSVFSMPWARMDDWRDGLATLQRAGFTVAA 196

Query: 212 LS-SDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           L+  D    L++       +  K+A+++G EG GL       A +   + M   I +LNV
Sbjct: 197 LALRDDAVGLDEFAARMRARPGKLAILMGTEGAGLSGHWISQADAAVRIPMAHGIDSLNV 256

Query: 266 SNAAAVALY 274
           + AAAVA Y
Sbjct: 257 AAAAAVACY 265


>gi|311742381|ref|ZP_07716190.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314009|gb|EFQ83917.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 274

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 20/192 (10%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V P  +D +    A  QG+    A +  P    LD  R+   L+V   + DP N GA++R
Sbjct: 86  VAPDVLDALTDTVA-PQGVVARCAMVDRPLKALLD--RSPTFLVVCADIRDPGNAGAVIR 142

Query: 153 SAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            A A   DG++ T      Y+P       ++  G+L H+P +   ++   L  + S G Q
Sbjct: 143 CADAAGADGVVFTGDSVDPYNPKS----VRATVGSLFHLPLVIDRDVEGTLAALQSAGLQ 198

Query: 209 TIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              L++D    ++    +  +    A ++G E  GL   T+  A  +  + + G  ++LN
Sbjct: 199 V--LAADGAGDVDLFDPSLDLAAPTAWLMGNEAWGLPEATRGRADHVVAVPIFGRAESLN 256

Query: 265 VSNAAAVALYIT 276
           ++ AAAV LY T
Sbjct: 257 LATAAAVCLYTT 268


>gi|294815551|ref|ZP_06774194.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326443902|ref|ZP_08218636.1| putative tRNA/rRNA methyltransferase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328150|gb|EFG09793.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 179

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 1/145 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++++ ++L++V  P N+G+I+R+A A     +      +   +A   K   G   ++   
Sbjct: 21  SAEVALLLENVQSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLDVQ 80

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               L +A++++ + G++ +GL  +D   PL +   +    + +G E  G+ P+      
Sbjct: 81  TFETLPEAVERVRADGYRLVGLELADEAVPLHEADLSGATCIAVGNEDHGISPQALGMCD 140

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           ++A +   G + +LNV+ A AVA Y
Sbjct: 141 AVAFIPQLGRVGSLNVATALAVACY 165


>gi|332295579|ref|YP_004437502.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
           narugense DSM 14796]
 gi|332178682|gb|AEE14371.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
           narugense DSM 14796]
          Length = 244

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 1/151 (0%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGA 183
            L+ +++ ++L+    + D  NIGA+ R+A A     GII  K  S   +    K+++G+
Sbjct: 84  VLNVIKSKKVLLAFSGIMDVRNIGAVARTAQASGLVGGIILPKHRSLDITPAAIKASTGS 143

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L  IP +R+SNL   ++ +   G   IG+        +    +  I  + G+E K L   
Sbjct: 144 LLSIPVVRLSNLRYFVKDLKRRGVSVIGVEKRGSVRYDMLKYDLPICCVFGSESKSLSDV 203

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    ++ M     +LN+S A+++ LY
Sbjct: 204 FLRDLDQNVYIPMSNDFNSLNLSVASSILLY 234


>gi|325126130|gb|ADY85460.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 254

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 118/268 (44%), Gaps = 56/268 (20%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q+ ++  +     + G H V  AL   S K  ++LAT+ AL+RL   A L   +      
Sbjct: 19  QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---AQLGLAY------ 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------------------MVL 138
                         +G  ++ +  ++  L + +NSQ +                   ++L
Sbjct: 69  -------------DEGKLIKISQSVASHLSSTKNSQDIFMTVKINRPKHFAFSYGKWVLL 115

Query: 139 DHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           D + DP N+G I+R+A A   DG+I    T   Y+P     + +S  G+  H+  I+ ++
Sbjct: 116 DDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK-AD 170

Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L DA+  + +        L   + K L   +   ++ALI+G E  G+ P+ +  A    +
Sbjct: 171 LPDAIASLKAADIPVYASLLDPAAKQLGDFVPVAQVALIIGNEAHGVSPEIEALADEKLY 230

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + + G  ++LN + AA + +Y    HF+
Sbjct: 231 IPIKGRAESLNAAVAAGIMIY----HFS 254


>gi|271966808|ref|YP_003341004.1| tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270509983|gb|ACZ88261.1| putative tRNA/rRNA methyltransferase [Streptosporangium roseum DSM
           43021]
          Length = 186

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 5/148 (3%)

Query: 130 RNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           RN++  L ++++ V  P NIG+I R+A AF  + I      +P  +    K+A G    +
Sbjct: 23  RNTEGRLALIVESVTGPFNIGSIFRTAAAFGVERIWLAGNATPPTNPKAQKTALGTDRLV 82

Query: 188 PYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +       +A++   + GF  +   L+ D+      E+  D + L++G+E  G  P   
Sbjct: 83  AWEEPVPAVEAVRAAKADGFTVVAVELTGDAAPLHAAELGGD-VCLVVGSEDHGCSPALL 141

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E A  + ++   G + + NV+ A A+AL
Sbjct: 142 EAADGVCYIPQVGRVGSFNVAVATAIAL 169


>gi|291528877|emb|CBK94463.1| rRNA methylases [Eubacterium rectale M104/1]
          Length = 302

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 35/219 (15%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     + K+ G       L     P      +  R+++ + VL+ V +P N+GAI
Sbjct: 80  IPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGAI 139

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--------SNLTDA---- 198
            RSA A   D ++ T   S        + + G +  +P+           +  +DA    
Sbjct: 140 FRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLHD 199

Query: 199 --------------------LQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGA 235
                               +  +H  GF+T  ++ +D    ++  +    +++A++LG 
Sbjct: 200 KCDSSDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLGT 259

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           EG GL  +T ++      + M   + +LNV+ A+AVA +
Sbjct: 260 EGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFW 298


>gi|238924067|ref|YP_002937583.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
 gi|238875742|gb|ACR75449.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
          Length = 302

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 35/219 (15%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T     + K+ G       L     P      +  R+++ + VL+ V +P N+GAI
Sbjct: 80  IPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGAI 139

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--------SNLTDA---- 198
            RSA A   D ++ T   S        + + G +  +P+           +  +DA    
Sbjct: 140 FRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLHD 199

Query: 199 --------------------LQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGA 235
                               +  +H  GF+T  ++ +D    ++  +    +++A++LG 
Sbjct: 200 KCDSSDQNCSDRNSSAYKYYIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLGT 259

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           EG GL  +T ++      + M   + +LNV+ A+AVA +
Sbjct: 260 EGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFW 298


>gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
 gi|48425869|pdb|1V2X|A Chain A, Trmh
 gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus]
 gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
          Length = 194

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187
           R   L ++L++V+ PHN+ AILR+     CD  G++     +P+         SG     
Sbjct: 19  RQPDLTVLLENVHKPHNLSAILRT-----CDAVGVLEAHAVNPTGGVPTFNETSGGSHKW 73

Query: 188 PYIRI-SNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            Y+R+  +L +A + +   GF      L  D++   E +      A++ GAE  G+  + 
Sbjct: 74  VYLRVHPDLHEAFRFLKERGFTVYATALREDARDFREVDY-TKPTAVLFGAEKWGVSEEA 132

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              A     + M G++++LNVS AAAV L+  Q  
Sbjct: 133 LALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQ 167


>gi|254391080|ref|ZP_05006288.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197704775|gb|EDY50587.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 182

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 1/145 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++++ ++L++V  P N+G+I+R+A A     +      +   +A   K   G   ++   
Sbjct: 24  SAEVALLLENVQSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLDVQ 83

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               L +A++++ + G++ +GL  +D   PL +   +    + +G E  G+ P+      
Sbjct: 84  TFETLPEAVERVRADGYRLVGLELADEAVPLHEADLSGATCIAVGNEDHGISPQALGMCD 143

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           ++A +   G + +LNV+ A AVA Y
Sbjct: 144 AVAFIPQLGRVGSLNVATALAVACY 168


>gi|322375834|ref|ZP_08050345.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
 gi|321279102|gb|EFX56144.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
          Length = 252

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 33/189 (17%)

Query: 95  TVPPQTIDKIVGKEAV-----HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           T  PQ I  ++ KE V     HQG  L                     L+ V DP N+G 
Sbjct: 85  TQTPQGIVAVIQKEEVGLPDLHQGKYL--------------------FLEDVQDPGNVGT 124

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---ISNLTDALQKMHSWG 206
           ++R+A A    G+I + + +   S    +S  G+  H+P  R   +S + +A  K  +  
Sbjct: 125 MIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMPLVSFVEEA--KKSNLP 182

Query: 207 FQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                LS +SK   E   ++N    L++G EG+G+     E+A  + H+ M G  ++LNV
Sbjct: 183 ILATTLSRESKDYRELSSLEN--FVLVMGNEGQGISSVMAESADQLVHIGMKGRAESLNV 240

Query: 266 SNAAAVALY 274
           + AA + ++
Sbjct: 241 AVAAGILMF 249


>gi|300744017|ref|ZP_07073037.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
 gi|300380378|gb|EFJ76941.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
          Length = 302

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 35/173 (20%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186
           N +L+ VL  + DP N G ILR A A   D +ITTK     Y+P       +S +G+L H
Sbjct: 126 NPKLIAVLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKT----VRSTAGSLFH 181

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL--------------- 231
           +P I+   L +  + + S G  T+ L++D    +  +   D  A+               
Sbjct: 182 VPIIQGVELEEFAEDVKSQG--TVVLAADGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKG 239

Query: 232 ----------ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     + G E +GL  + +  AT    + + G  ++LNV  AAA+ LY
Sbjct: 240 AFDLSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLY 292


>gi|311113269|ref|YP_003984491.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944763|gb|ADP41057.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 314

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 35/173 (20%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186
           N +L+ VL  + DP N G ILR A A   D +ITTK     Y+P       +S +G+L H
Sbjct: 138 NPKLIAVLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKT----VRSTAGSLFH 193

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL--------------- 231
           +P I+   L +  + + S G  T+ L++D    +  +   D  A+               
Sbjct: 194 VPIIQGVELEEFAEDVKSQG--TVVLAADGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKG 251

Query: 232 ----------ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     + G E +GL  + +  AT    + + G  ++LNV  AAA+ LY
Sbjct: 252 AFDLSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLY 304


>gi|242791156|ref|XP_002481702.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718290|gb|EED17710.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 536

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 130/317 (41%), Gaps = 89/317 (28%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLA---------------TKNALAR-------- 80
           + P + F+YG+  V AA+    RK++ L                  K ALAR        
Sbjct: 185 TTPASEFIYGLSAVDAAIRCTRRKLYMLYIYQAVGEELSPEKIALRKLALARGIQVKMAF 244

Query: 81  LDWD-------ANLPH------PFPVKTVP-------PQTIDKI--VG--KEAVHQGLAL 116
             WD       A  PH        P+  +P       P  ID    VG  K++V +    
Sbjct: 245 AGWDKLLDKMSAGRPHNGVILEASPMPQIPVTSLRPVPSPIDDFFEVGLDKQSVEEAEVN 304

Query: 117 ETAPLLSPT--LDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
            ++  ++     + V  S+  L+++LD + DP N+GA++RSA     D ++ T R S   
Sbjct: 305 GSSNRIARVERFEEVEKSRFPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPL 364

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ-----------------------T 209
           + V  K+++GA E++   +  +  D +++    G++                       T
Sbjct: 365 TPVTIKASAGAAENMTIFKAKSEIDFIRRSRENGWRFYAADSPQNVSDLAATHGTLADYT 424

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---------- 259
             ++++   P    + +    L+LG EG GL P+ +  A +  ++ +PG           
Sbjct: 425 ATVAANGSSPSASLLTSAPTVLMLGNEGTGLLPRIK--AQADGYVSIPGARIRPDLGIND 482

Query: 260 ---IKALNVSNAAAVAL 273
              + +LNVS AAA+ +
Sbjct: 483 AARVDSLNVSVAAALLM 499


>gi|262379400|ref|ZP_06072556.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262298857|gb|EEY86770.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 263

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 35/258 (13%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R   +  S+ +K R T       L G H   + L   ++KI  L +T+ AL   D++  L
Sbjct: 23  RGLIEQNSYRKKQRQT------ILEGTHLCLSWLQE-NKKIHSLFSTEQALNHPDFEQIL 75

Query: 88  P----HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLL------M 136
                H F             V  EA+++ L+ L T+      +D   N+Q L      +
Sbjct: 76  EYYQGHVF-------------VLSEALYRDLSTLGTSLACLAIIDLPTNTQPLQYHLDTL 122

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L++V DP N+G +LRSA A +   ++ T+  +   S  + ++  GA   +       L 
Sbjct: 123 ILENVQDPGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLE 182

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           D L+K     F T   SS   + + Q+      A ILG EG+G      + A ++  +  
Sbjct: 183 DILEKFEIPVFVT---SSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQ 238

Query: 257 PGIIKALNVSNAAAVALY 274
           PG  ++LNV+ A ++  +
Sbjct: 239 PGGQESLNVAVAGSICFF 256


>gi|312877039|ref|ZP_07737012.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796180|gb|EFR12536.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 270

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 1/163 (0%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+  E    +   ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK     
Sbjct: 104 QGILAE-CNFVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDI 162

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +    ++  G+L H+  +R +     ++ +    F     +      + + + + +  +
Sbjct: 163 YNPKTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVTTPYGDIEISKIVPDKRFCV 222

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++G E +G+     + AT    + M G  ++LN + AA++ LY
Sbjct: 223 VIGNESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLY 265


>gi|218258662|ref|ZP_03474983.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225287|gb|EEC97937.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
           DSM 18315]
          Length = 179

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L+P  +A ++S+   L++VLDHV   +N+G++ R++ AF  + I      +    A + K
Sbjct: 15  LTP--EAFKDSEKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 72

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGA 235
           +A GA E + +    +  DA+ K+   G+    +       +  ++   KN K A+I+G 
Sbjct: 73  TALGAEETVGWEYFEDTMDAVDKLKQQGYTVCAVEQAEGSTMLDKLLLDKNKKYAVIMGN 132

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E KG++    +       +   G   +LNVS    + ++
Sbjct: 133 EVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIW 171


>gi|255319437|ref|ZP_05360652.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|255303505|gb|EET82707.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
          Length = 258

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 35/258 (13%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R   +  S+ +K R T       L G H   + L   ++KI  L +T+ AL   D++  L
Sbjct: 18  RGLIEQNSYRKKQRQT------ILEGTHLCLSWLQE-NKKIHSLFSTEQALNHPDFEQIL 70

Query: 88  P----HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLL------M 136
                H F             V  EA+++ L+ L T+      +D   N+Q L      +
Sbjct: 71  EYYQGHVF-------------VLSEALYRDLSTLGTSLACLAIIDLPTNTQPLQYHLDTL 117

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L++V DP N+G +LRSA A +   ++ T+  +   S  + ++  GA   +       L 
Sbjct: 118 ILENVQDPGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLE 177

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           D L+K     F T   SS   + + Q+      A ILG EG+G      + A ++  +  
Sbjct: 178 DILEKFEIPVFVT---SSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQ 233

Query: 257 PGIIKALNVSNAAAVALY 274
           PG  ++LNV+ A ++  +
Sbjct: 234 PGGQESLNVAVAGSICFF 251


>gi|56753289|gb|AAW24848.1| SJCHGC03201 protein [Schistosoma japonicum]
          Length = 237

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 37/179 (20%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N   +++LDHV D  N G+ILRSA  F    +I +     S S +++K + GA+E I + 
Sbjct: 39  NRPTVLLLDHVMDIMNFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGAMESIRFY 98

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-------------NDK--------I 229
           R+++    ++ +   GF  +G   +++ P  +  K             ND         +
Sbjct: 99  RLTDTVMDMKSLSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPL 158

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPG--------------IIKALNVSNAAAVALY 274
            L LG+E +GL      +   +  L +PG              I  +LNV+ A  + LY
Sbjct: 159 VLALGSESRGLSENILNSCDLL--LRIPGFGDSTKFNHCVSQSIPSSLNVAVATGILLY 215


>gi|317153991|ref|YP_004122039.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944242|gb|ADU63293.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 226

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 14/157 (8%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEH 186
           A R   L +V+D++ DPHN+ A+LRS  AF    +     Y+ S+   L K +SG A++ 
Sbjct: 38  ARRQKDLTLVMDNIWDPHNVSAVLRSCDAFGVSDV--HLYYTTSQWPDLGKKSSGSAMKW 95

Query: 187 IPYIR-------ISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEG 237
           I  IR       + NL       H  G Q +  G S+ ++  ++ +      A+IL  E 
Sbjct: 96  IRLIRHVDAATMVGNLVGGGGSAHD-GGQILRTGFSATARPVMDFDF-TIPTAIILSNEH 153

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G  P+         ++ M G++++LNVS AAA+ LY
Sbjct: 154 RGTSPELAALVPDEVYIPMQGMVQSLNVSVAAAIILY 190


>gi|255023881|ref|ZP_05295867.1| rRNA methylase [Listeria monocytogenes FSL J1-208]
          Length = 131

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 2/128 (1%)

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  K  +   +  + +S  G+  HIP I+ ++L + +  +   G 
Sbjct: 1   GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFEWIANLEEEGV 59

Query: 208 QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG +  D  K L    K D +AL++G EG G+ P+ Q+  +   ++ + G  ++LNV+
Sbjct: 60  PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 119

Query: 267 NAAAVALY 274
            AA + LY
Sbjct: 120 VAAGILLY 127


>gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 258

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 36/276 (13%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EK+ S+ + H        +++KK+Q+     ++  Q     L G H V+ A+ +   +I 
Sbjct: 2   EKLTSIHNQHV-------KNWKKLQT----KKYRRQTGTYLLDGWHLVNEAVQS-GVQIL 49

Query: 70  QLLATKNALA-RLDWDANLPHPFPV---------KTVPPQTIDKIVGKEAVHQGLALETA 119
           QL+ T   LA   D ++     + V          TV PQ I  +V     H+       
Sbjct: 50  QLIGTSEQLAAHSDLNSLTNEVYEVTEEVMQHITDTVTPQGIAAVVPLPDAHK------- 102

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
               P ++++    L   LD V DP N+G ++R+A A    G++ + R +   S  + +S
Sbjct: 103 ---VPDMESLHGGWLF--LDRVQDPGNVGTMVRTADAAGFAGVVVSHRSADIFSPKVIRS 157

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGK 238
             G+  H+      +L   ++   +      G   + + K           ALI+G EG+
Sbjct: 158 MQGSQFHLKLYE-GDLAKWIEDFKTVNAPIYGTQLNPQAKSFRDAEPGKTFALIMGNEGQ 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+  +     T+  ++ M G  ++LNV+ +A + ++
Sbjct: 217 GMSDQLLSQTTANLYIPMRGQAESLNVAVSAGILMF 252


>gi|217421307|ref|ZP_03452811.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
 gi|217395049|gb|EEC35067.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
          Length = 262

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 9/252 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +     L G H  SA L+   +    ++ T  ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRGAQALLEGFHLASAYLDAAGQPQLCVV-TDGALAHEEAR 65

Query: 85  ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142
             +    P + V  P  +   +       GL L  A P  +P L A R +   +VLD V 
Sbjct: 66  GIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVARP--APALPA-RVAGTSVVLDGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A   + +      + + S+ + +SA GA  H   + I    DA   +
Sbjct: 123 DAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTLI 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + +        +A + G EG G+  + +E AT    +  PG +++
Sbjct: 180 ERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALY 274
           LNV+ AAAV L+
Sbjct: 240 LNVAAAAAVCLF 251


>gi|215430536|ref|ZP_03428455.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
 gi|289753732|ref|ZP_06513110.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
 gi|289694319|gb|EFD61748.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
          Length = 260

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 4/145 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIR 191
           QL+ V   + +P N G ++R A A     +I   R   P     L ++++G++  IP + 
Sbjct: 108 QLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPCNGKCL-RASTGSIFAIPVVV 166

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETAT 249
             ++  A+  + + G Q +  + D +  L+    +  +  A + G E  GL  +    A 
Sbjct: 167 APDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALAD 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
              H+ M G  ++LNV+ AAA+ LY
Sbjct: 227 HRVHIPMSGGAESLNVAAAAAICLY 251


>gi|15841100|ref|NP_336137.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31792831|ref|NP_855324.1| 23S rRNA methyltransferase TsnR [Mycobacterium bovis AF2122/97]
 gi|121637552|ref|YP_977775.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148822852|ref|YP_001287606.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
 gi|215411290|ref|ZP_03420098.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426963|ref|ZP_03424882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|218753350|ref|ZP_03532146.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|219557563|ref|ZP_03536639.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|224990027|ref|YP_002644714.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799316|ref|YP_003032317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           1435]
 gi|254231845|ref|ZP_04925172.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
 gi|254364493|ref|ZP_04980539.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260186592|ref|ZP_05764066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|260200707|ref|ZP_05768198.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|260204913|ref|ZP_05772404.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289443098|ref|ZP_06432842.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|289447254|ref|ZP_06436998.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|289554581|ref|ZP_06443791.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           605]
 gi|289569691|ref|ZP_06449918.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|289574313|ref|ZP_06454540.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289750192|ref|ZP_06509570.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|289761795|ref|ZP_06521173.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|294996594|ref|ZP_06802285.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 210]
 gi|297634197|ref|ZP_06951977.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           4207]
 gi|297731184|ref|ZP_06960302.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           R506]
 gi|298525142|ref|ZP_07012551.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306779644|ref|ZP_07417981.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu002]
 gi|306784375|ref|ZP_07422697.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu003]
 gi|306788744|ref|ZP_07427066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu004]
 gi|306793080|ref|ZP_07431382.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu005]
 gi|306797461|ref|ZP_07435763.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu006]
 gi|306803340|ref|ZP_07440008.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu008]
 gi|306807922|ref|ZP_07444590.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu007]
 gi|306967739|ref|ZP_07480400.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu009]
 gi|313658516|ref|ZP_07815396.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           V2475]
 gi|13881315|gb|AAK45951.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31618421|emb|CAD96339.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis
           AF2122/97]
 gi|121493199|emb|CAL71670.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600904|gb|EAY59914.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
 gi|134150007|gb|EBA42052.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148721379|gb|ABR06004.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
 gi|224773140|dbj|BAH25946.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320819|gb|ACT25422.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           1435]
 gi|289416017|gb|EFD13257.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|289420212|gb|EFD17413.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|289439213|gb|EFD21706.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           605]
 gi|289538744|gb|EFD43322.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289543445|gb|EFD47093.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|289690779|gb|EFD58208.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|289709301|gb|EFD73317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|298494936|gb|EFI30230.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308327413|gb|EFP16264.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu002]
 gi|308330923|gb|EFP19774.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu003]
 gi|308334693|gb|EFP23544.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu004]
 gi|308338535|gb|EFP27386.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu005]
 gi|308342205|gb|EFP31056.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu006]
 gi|308345731|gb|EFP34582.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu007]
 gi|308350031|gb|EFP38882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu008]
 gi|308354668|gb|EFP43519.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu009]
 gi|323719905|gb|EGB29018.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903259|gb|EGE50192.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148]
 gi|328459067|gb|AEB04490.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           4207]
          Length = 260

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL+ V   + +P N G ++R A A     +I   R     +    ++++G++  IP +  
Sbjct: 108 QLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVA 167

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++  A+  + + G Q +  + D +  L+    +  +  A + G E  GL  +    A  
Sbjct: 168 PDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADH 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
             H+ M G  ++LNV+ AAA+ LY
Sbjct: 228 RVHIPMSGGAESLNVAAAAAICLY 251


>gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
 gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
          Length = 263

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 112/258 (43%), Gaps = 22/258 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           R N R  +   +F  ++R +S    + + G H V  AL     K  Q L T     R++ 
Sbjct: 11  RTNPRLKQLRAAFQGQARLSSG--LIAVEGEHMVEEAL-----KSGQALKTVFLSERMEL 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMV 137
            A +P    V +V       I  +    QG+A     LL P   +V          L+++
Sbjct: 64  PAYVPASVEVVSVASDVFASIA-ETRTPQGIA----ALLVPPAHSVEKMLEGPGEALILI 118

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIRISNLT 196
              + DP N+G ++RSA AF   G++TT    SP     + ++++G++  +P    +   
Sbjct: 119 AVGLQDPGNLGTLIRSAEAFGATGVLTTPGTVSPWNQKAM-RASAGSVFRLPVAVAT--P 175

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           DA++ +   G + +    D    + +       A+++G EG GL       A     +  
Sbjct: 176 DAMETLEQQGIKLLAAMKDDAVAIGEADLTVGSAILIGNEGAGLNEDWLRLADQRVTIPC 235

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LN + A ++ LY
Sbjct: 236 PGWVESLNAAVAGSILLY 253


>gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
 gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
          Length = 232

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ A++R+A A     I     +  +    L  SA+G+   +
Sbjct: 14  AARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEIHAV--WPTTRMKTLVSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+ KM + G Q +  +   K    + I   +   ++LG E  G+ P+   
Sbjct: 72  QVKTHKTIQDAVAKMKAKGMQILATNLSEKAVDFRAIDYTRPTCILLGQEKTGITPEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A S   + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADSDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|304436951|ref|ZP_07396914.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369902|gb|EFM23564.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 276

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIG 148
           PV  VPP+        +A    L L   P      D V  ++     + LD V DP N+G
Sbjct: 80  PVNCVPPRLFAACAETDAPQGILLLMQRPPRRSLTDLVHAAEKVPFYLALDRVQDPGNVG 139

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWG 206
            ILR+A A    G+I  +  +   S+ + ++  G+L ++P+I   +  + L+  +  S  
Sbjct: 140 MILRTADAAGAAGVILLRGCADVYSSKVVRATMGSLFYVPFISGVDDEELLRFAQEQSLY 199

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKALN 264
                  +D+      ++    I ++LG E  G+   ++    +  HL++P  G  ++LN
Sbjct: 200 LYAAACDADAVTHFAADLCRPTI-VVLGNEANGV---SERLLGACQHLYVPMCGQAESLN 255

Query: 265 VSNAAAVALY 274
           V++AA   LY
Sbjct: 256 VASAATAILY 265


>gi|270290417|ref|ZP_06196642.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
 gi|304384701|ref|ZP_07367047.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
 gi|270281198|gb|EFA27031.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
 gi|304328895|gb|EFL96115.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
          Length = 256

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 123/275 (44%), Gaps = 35/275 (12%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI S+K+S         +++ K+++ N + ++       FL G H V  AL    +  +
Sbjct: 3   EKISSVKNSKV-------KEWVKLKTNNGRKKY----RRFFLEGRHPVETALVEERQYEY 51

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            ++     LA L+  AN+     +  V  + + K +      QG+ L     +    DAV
Sbjct: 52  LIVEEGFDLASLE--ANVDEDKLI--VVTKEVSKHIADTVHEQGIFL-----IGYVEDAV 102

Query: 130 RN-----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSA 180
                  +   ++LD+V DP NIG ++R+A A    G+I    T   Y+P     + ++ 
Sbjct: 103 YEMPNDTTGQWLLLDNVQDPGNIGTMVRTADAAGFTGVIFGSGTADFYNPK----ILRAM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKG 239
            G+  H+   R+ NL   ++  H       G   D      ++I   K  +LI+G EG G
Sbjct: 159 QGSQYHLQLKRL-NLQKWIEACHQAHQAVYGSILDEHAQSYRDIDAPKDFSLIMGNEGNG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P+  +      ++ + G  ++LNV+ AA V ++
Sbjct: 218 MSPELVKATDCNLYIPIKGNAESLNVAVAAGVLMF 252


>gi|289428651|ref|ZP_06430334.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|289158049|gb|EFD06269.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|313807984|gb|EFS46465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA2]
 gi|313819552|gb|EFS57266.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA2]
 gi|313822125|gb|EFS59839.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA1]
 gi|313823641|gb|EFS61355.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA2]
 gi|313825966|gb|EFS63680.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA1]
 gi|314924709|gb|EFS88540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA3]
 gi|314962120|gb|EFT06221.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA2]
 gi|314978998|gb|EFT23092.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA2]
 gi|314986555|gb|EFT30647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA2]
 gi|314990914|gb|EFT35005.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA3]
 gi|315087106|gb|EFT59082.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA3]
 gi|315089280|gb|EFT61256.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA1]
 gi|327329699|gb|EGE71455.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA3]
 gi|327446385|gb|EGE93039.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA2]
 gi|328752374|gb|EGF65990.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL020PA1]
 gi|332675955|gb|AEE72771.1| rRNA methylase family protein [Propionibacterium acnes 266]
          Length = 269

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +P+ R+ +
Sbjct: 120 LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 179

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248
               L ++   GF    +          E   D      K+AL++G EG GL       A
Sbjct: 180 WAGGLGELRDHGFTVAAMELSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQA 239

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G + +LNV+ AAAVA Y
Sbjct: 240 DVVVRIPMAGGVDSLNVAAAAAVACY 265


>gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
           44728]
 gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
           44728]
          Length = 236

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L +VLD + DP N G ILR+A A     ++         +    +++ G+L H+P +R 
Sbjct: 80  RLAVVLDGIADPGNAGTILRTADAAGAQAVVFPHGSVDPYNGKCVRASVGSLFHLPVVRG 139

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
            +  + L  + + G + +      +  L+  I +  +    A + G+E  GL     E A
Sbjct: 140 GDTDEHLDALRAKGLRILAADVRGETDLDAAIDDGLLRQPTAWLFGSEAHGLSDALTERA 199

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + + G  ++LN++ AAAV LY
Sbjct: 200 DVRVRVPIYGAAESLNLATAAAVCLY 225


>gi|254429253|ref|ZP_05042960.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
 gi|196195422|gb|EDX90381.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
          Length = 230

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAK- 178
           +  TLD  R   L +++D V+ PHNI AI+R+     CD  GI+      P   A +A  
Sbjct: 9   ICETLDR-RQPDLTVIMDGVHKPHNIAAIVRT-----CDAVGILDVHAVLPKNRARMAAG 62

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237
           +A G+   +   +    TD ++++   G Q +    SD   P  +       AL+LG E 
Sbjct: 63  TAMGSQRWVQVHKRDESTDVIRELQGQGVQVLAAHLSDDAIPYREVDYTRPTALLLGTEK 122

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G+  +          + M G++++ NVS AAA+ L
Sbjct: 123 FGVSDEVASVVDQNVTIPMMGMVESFNVSVAAAIIL 158


>gi|116072278|ref|ZP_01469545.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
 gi|116064800|gb|EAU70559.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
          Length = 229

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R + L ++L+HV  PHN+ AILR     SCD +   + ++ S S        +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILR-----SCDAVGALEAHAVSFSGRPRTYNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P     ++  A++ + + GF+  G  L ++++   + +      A +LGAE  GL  + 
Sbjct: 73  VPLNDHPDIETAIKVLKAKGFRLYGTHLGTNARDYRDCDFTG-PTAFVLGAEKWGLSDQA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++       + M G++++LNVS A A  L+
Sbjct: 132 RDLMDEALFIPMRGMVQSLNVSVATATLLF 161


>gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 325

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 21/204 (10%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LDAVRN-------SQLLM 136
            PV  V  + + +IVG + +H+GL      +  P+       LDA R+       S  + 
Sbjct: 95  IPVWCVSREVMAEIVGFD-MHRGLLASANRVDVPSISDVLDELDARRDRPDQPPVSGTIA 153

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---- 192
           VL+ V D  NIGA+ R+A     D +      +      + + + G +  +P+       
Sbjct: 154 VLEGVGDHENIGALFRNAAGLGVDAVFFGAGCADPLYRRVVRVSMGHVLRVPFAYFDGNR 213

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS 250
           S     L ++   G++ + L+ SD    L + +    + ALI+GAEG GL       +  
Sbjct: 214 STWQRGLSELQQRGYRCVALTPSDDAVMLPEALDGAQRAALIVGAEGPGLTEHAMRASDV 273

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
            A + M     +LNV+ AAA+  Y
Sbjct: 274 RARIPMAPGTDSLNVATAAAMGFY 297


>gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 286

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ VL HV DP N G +LR+A A   D ++ T       +    +++ G+L H+P    
Sbjct: 125 KLVAVLAHVRDPGNAGTVLRTADAAGADAVVLTDASVDPYNPKAVRASVGSLFHLPVATG 184

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
             + +A+ ++ + G + +      ++ L+QE+    +    A + G E  GL  +T+  A
Sbjct: 185 VPVEEAVARLRAAGVRVLAADGAGERDLDQELDQGTLEGPCAWVFGNEAWGLPEETRALA 244

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            ++  + + G  ++LN++ AAAV LY
Sbjct: 245 DAVVRVPIHGHAESLNLATAAAVCLY 270


>gi|86142668|ref|ZP_01061107.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85830700|gb|EAQ49158.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 175

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++V D +N P N G++ R A A     I         ES  L ++A  + + +PY   +
Sbjct: 22  FVLVCDGINSPANAGSLFRLADALGIAHIYFCNTTIQFESTRLKRTARSSEKLVPYSPDA 81

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250
           ++   L  +    +  IGL  + + KPL    E    KIAL+LG E  G+          
Sbjct: 82  DVITTLNGLKEKDYHLIGLELTTTSKPLASLNEYAFKKIALVLGHERYGICEDVLNILDH 141

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           + ++ M G   ++NVS AAA+A Y
Sbjct: 142 ITYIPMRGKNSSMNVSQAAAIAAY 165


>gi|291458961|ref|ZP_06598351.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418215|gb|EFE91934.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 248

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           + V +    ++L+ + DP N+G I R A A   +GI  +   +   S  L +S  G+L  
Sbjct: 90  ERVLSGDFFLLLESLQDPGNLGTIFRLAEAAGVNGIYMSSDCADIYSPKLVRSTMGSLYR 149

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P+  + +L + + ++   G +        +K           A ++G EG+GL P+  E
Sbjct: 150 LPFRIVPDLKETIAELKKKGVRCFASHLLGEKAHYDCDFRSPTAFLIGNEGRGLSPELSE 209

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            A     + M G +++LN + AAA+  Y T
Sbjct: 210 AADIRLRIPMKGGVESLNAAAAAAILSYET 239


>gi|297588550|ref|ZP_06947193.1| rRNA methylase [Finegoldia magna ATCC 53516]
 gi|297573923|gb|EFH92644.1| rRNA methylase [Finegoldia magna ATCC 53516]
          Length = 243

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 9/144 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRI 192
           ++ L+ +NDP N+G I+RSA AF  + II +       +    +SA G+L   +I Y  I
Sbjct: 98  ILFLECINDPGNLGTIIRSAEAFGYNNIILSDNSCDIYNLKTIRSAMGSLFRINISYESI 157

Query: 193 SNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                 L+   S GF+     L  +SK  LE + K +K  LI+G E  G+  + ++ A  
Sbjct: 158 H----VLENYKSNGFKIYETSLEKNSKSILEIKDK-EKHVLIIGNEANGISDEIKKYADE 212

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M  + ++LN S AA+++++
Sbjct: 213 FLIIPMDNVTESLNASIAASLSMF 236


>gi|226941122|ref|YP_002796196.1| tRNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226716049|gb|ACO75187.1| Probable tRNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 257

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIV 105
           L L G+H V A L    R + QL   ++ALA  +  A    L    PV  VP   + K  
Sbjct: 31  LVLEGLHLVDAWLARQPR-LDQLFVREDALAHPEVTALLARLSADTPVAVVPAALLGKAS 89

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
              +  + +AL   P+ +P      +   +++LD V DP N+G +LR+A A     +  +
Sbjct: 90  ELASPAEVIALAPIPVPAPY-----HGGSVLLLDDVQDPGNLGTLLRTAAAADVRRVYLS 144

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
              +   S    ++  GA   +     + L   LQ       + +    +   PL     
Sbjct: 145 AGCADVWSGKALRAGMGAQFALDLHERAVLPAVLQAFSG---RKVVTHLEGSVPLWSLDL 201

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +A + G EG G+     + A     + MPG+ ++LNV+ AAA+ L+
Sbjct: 202 TGDVAFVFGNEGAGVSAAVLDCAPDRVIIPMPGVAESLNVAAAAAICLF 250


>gi|50310205|ref|XP_455122.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644258|emb|CAG97829.1| KLLA0F00946p [Kluyveromyces lactis]
          Length = 400

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 119/322 (36%), Gaps = 64/322 (19%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL--FLYGVHTVSAALNN 63
           KK  ++I   + S   + R +  +Y KM           +P  L  +++G ++V +AL  
Sbjct: 84  KKYYDRIKQEESSKREQFRSHRSEYTKMHPL-----QGLKPNPLVDYVFGTNSVISALTA 138

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IVGKEAVHQGLALETA 119
             R+ F  L     L     +  +        +  + +DK    +    AVH  + LE  
Sbjct: 139 KKREYFVKLHHYGPL-----NTQIQSLCSKNNIQTEEVDKHRLNLYTNYAVHNNVVLECK 193

Query: 120 PLLSPTL---------------------DAVRNSQLLMV-----------LDHVNDPHNI 147
           PL  P L                      AV   +  M            LD V DPHN+
Sbjct: 194 PLQPPELSHLGLVNHEACTFDKSEIDYDQAVNTREKFMTNDNKKNPLGIYLDEVVDPHNV 253

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH---S 204
           GAI+RSA     D ++ + +     S V++K +SG +E +P    +      +K      
Sbjct: 254 GAIIRSAYFLGADFMVLSHKNCAPLSPVVSKVSSGTMELLPIFTTAKPLQFFEKSKQDGG 313

Query: 205 WGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKGLRPK-------TQETATSM 251
           W F T  +S   K        L   +    + L++G EG G+R         T E     
Sbjct: 314 WMFVTSHMSISQKGNHLTMNELSGMLNELPVVLVVGNEGNGVRTNLLNRSDFTVEIPFGR 373

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
                   I +LNVS A A+ +
Sbjct: 374 DPTEGRNTIDSLNVSVATALLI 395


>gi|325102944|ref|YP_004272598.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
 gi|324971792|gb|ADY50776.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
          Length = 176

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L  P+++  +N     +++VLD+V   HN+G+  R+A  F+ D +      +   
Sbjct: 4   LKLDELNRPSVEEFKNQDKLPIVVVLDNVRSLHNVGSAFRTADGFAVDALYLCGITAQPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKND-KI 229
              + K+A GA + I +   +N+ DA+  +   G+Q I +  + +S   L+ E K D K 
Sbjct: 64  HREIEKTALGATQSIDWQYFANVADAVADLKENGYQIIAIEQAENSISLLDFEPKKDQKF 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL  G E  G+  +  +   +   +   G   + N+  +  + L+
Sbjct: 124 ALFFGNEVNGVSEEVMKQIDTCIEIPQFGTKHSFNIVISTGIVLW 168


>gi|294675164|ref|YP_003575780.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294471809|gb|ADE81198.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 176

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 10/173 (5%)

Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L T  +   T+D  + +    L++VLD V   HN+G++ R+  AF  + +      S   
Sbjct: 4   LRTIEMDRLTVDEFKQADKLPLIVVLDDVRSMHNVGSVFRTGDAFRIEAVYLCGITSTPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKI 229
            A + K+A GA + + +       +A++ + + G++   +       + Q    I N K 
Sbjct: 64  MAEIHKTALGAEDSVTWKYFDTALEAVETLKAEGYEVYSVEQAHGSTMLQNFTPINNKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A++LG E KG+  +  + +     +   G   ++NVS    + ++    HFAK
Sbjct: 124 AVVLGNEVKGVHQEVIDASDGCLEIPQFGTKHSMNVSVTGGIIIW----HFAK 172


>gi|307084225|ref|ZP_07493338.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu012]
 gi|308366170|gb|EFP55021.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu012]
          Length = 256

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL+ V   + +P N G ++R A A     +I   R     +    ++++G++  IP +  
Sbjct: 108 QLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVA 167

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++  A+  + + G Q +  + D +  L+    +  +  A + G E  GL  +    A  
Sbjct: 168 PDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADH 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
             H+ M G  ++LNV+ AAA+ LY
Sbjct: 228 RVHILMSGGAESLNVAAAAAICLY 251


>gi|257459137|ref|ZP_05624256.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
           RM3268]
 gi|257443522|gb|EEV18646.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
           RM3268]
          Length = 233

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 7/163 (4%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG   E        L +V++ + + +L  + D  NIGAI+RSA A   D +I     + 
Sbjct: 61  HQGFLAEVEEFSFGDLASVKDDKFVPILYGLTDVGNIGAIMRSAYALGADSVIVVA--NN 118

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDK 228
              A + +++SGA   +  ++ ++    L ++   GF+    S+   S K LE   KN  
Sbjct: 119 LNMAGVVRASSGAAYELNVVKAADGLSVLNELKQSGFEIYAASAGGTSFKELELGAKN-- 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            AL++G E +G+  +  +       + M     +LNVS A A+
Sbjct: 177 -ALVMGNEEEGIPARALKKCDCAVSIKMREGWDSLNVSAAFAI 218


>gi|311740920|ref|ZP_07714747.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304440|gb|EFQ80516.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 18/198 (9%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIG 148
           P+  V  +T+ ++ G + +H+GL  A + AP   P + + V +++ + VL+ V D  NIG
Sbjct: 69  PIYEVSRETLAEVAGFD-MHRGLVAAADRAP--EPEVSEIVDSAKTIAVLEGVGDHENIG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-------LQK 201
           AI R A     D ++     S +   +  +S   ++ H+  +  ++L          LQ 
Sbjct: 126 AIFRHAAGMGVDAVLLG---SGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQA 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +    F  I L+ + +     E  +  DK+A+++GAEG GL     +     A + M   
Sbjct: 183 LADASFTLISLTPNPEAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPG 242

Query: 260 IKALNVSNAAAVALYITQ 277
             +LNV+ AAA++ Y  Q
Sbjct: 243 TDSLNVATAAAISFYERQ 260


>gi|330805649|ref|XP_003290792.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
 gi|325079070|gb|EGC32689.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
          Length = 591

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 31/165 (18%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII-----TTKRYSPSE--SAVLAKSASGALEH 186
           +++ LD V +P N+GAI R+   F    II     T    SP    S    +S+ GALEH
Sbjct: 377 IIVFLDGVENPMNLGAIARTCALFGVKSIIINASSTENTKSPINPFSGEAYRSSRGALEH 436

Query: 187 IPYIRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKND---------------K 228
           +    I+  T+ ++ ++ +   G++ +  SS+       E+KN+                
Sbjct: 437 VNISIINTYTETMECLNEFTSNGWELVVTSSN------LELKNNVTLYSKGSNKLLGLKP 490

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + L+ G+E KG+  K  + +T    +   G+I++LNV+ +A+V L
Sbjct: 491 MILVFGSESKGIGKKIMKASTRCLTIPGTGLIESLNVAQSASVIL 535


>gi|227543952|ref|ZP_03974001.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909702|ref|ZP_07127163.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227186068|gb|EEI66139.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300893567|gb|EFK86926.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 258

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 118/281 (41%), Gaps = 38/281 (13%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E++ S+ + H        +D+KK+Q+  +K+R   Q     L G H V  A +    ++ 
Sbjct: 2   EQLTSIHNQHV-------KDWKKLQT--KKARR--QTGTYLLDGWHLVQEA-SKAGIELL 49

Query: 70  QLLATKNALA---RLDWDANLPHPFP-------VKTVPPQTIDKIVGKEAVHQGLALETA 119
           +++ T   LA    L+  AN  +            TV PQ I  +V     H+   L   
Sbjct: 50  EVVGTTEQLAAHPELEGMANATYEVTEEIMKHITDTVTPQGIAAVVALPDSHR---LPAG 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L           LD V DP N+G ++R+A A    G++  +R +      + +S
Sbjct: 107 PLHGAWL----------FLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRS 156

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGK 238
             G+  H+      +L   +    S    T G   + + K        D  ALI+G EG+
Sbjct: 157 MQGSQFHLQMFE-GDLRKWIDDFKSINAPTYGTQLNPQAKNFRTVDPGDTFALIMGNEGQ 215

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
           G+        T   ++ M G  ++LNV+ +A + ++ + QN
Sbjct: 216 GMSDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQN 256


>gi|256830493|ref|YP_003159221.1| TrmH family RNA methyltransferase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579669|gb|ACU90805.1| RNA methyltransferase, TrmH family, group 3 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 251

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 3/142 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD V DP N+G + R+ +A    G++  K  +       AK+A+GAL+ +P  ++ 
Sbjct: 103 LILALDQVQDPGNVGTLARTLLALGGAGLLFPKDRTAFIGPAAAKAAAGALDSLPLCQVV 162

Query: 194 NLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           NL  AL      G    G  +  DS+  L Q   N    L+LG E KG+RP   +  T M
Sbjct: 163 NLARALDTCAEAGLAIYGSGTGPDSRN-LFQARLNFPAVLVLGNEDKGMRPNVGKRCTEM 221

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             + M G   +LNV+ A A+ +
Sbjct: 222 LSIPMQGGFDSLNVAQAGAMIM 243


>gi|15608782|ref|NP_216160.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Rv]
 gi|148661440|ref|YP_001282963.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|167968402|ref|ZP_02550679.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|306775831|ref|ZP_07414168.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu001]
 gi|306971937|ref|ZP_07484598.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu010]
 gi|307079653|ref|ZP_07488823.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu011]
 gi|1838995|emb|CAB06638.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium
           tuberculosis H37Rv]
 gi|148505592|gb|ABQ73401.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|308215746|gb|EFO75145.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu001]
 gi|308358624|gb|EFP47475.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu010]
 gi|308362550|gb|EFP51401.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu011]
          Length = 260

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL+ V   + +P N G ++R A A     +I   R     +    ++++G++  IP +  
Sbjct: 108 QLIAVTVEIREPGNAGTVIRIADAMGAAAVILAGRSVDPYNGKCLRASTGSIFAIPVVVA 167

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++  A+  + + G Q +  + D +  L+    +  +  A + G E  GL  +    A  
Sbjct: 168 PDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALADH 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
             H+ M G  ++LNV+ AAA+ LY
Sbjct: 228 RVHILMSGGAESLNVAAAAAICLY 251


>gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
          Length = 246

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 7/152 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG 182
           P  D  +  Q+L++ D V DP N+G ++R+A A   D +I  K  + P +  VL +++ G
Sbjct: 97  PQYDISKAQQVLLI-DRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVL-RASQG 154

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P + +    D    +  +     G + ++    ++    D  AL+LG EG+G+ P
Sbjct: 155 SVFHLPIMTL----DLDTFITQFNGPVYGTALENAVAYKEVTSIDSFALLLGNEGEGVNP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     T    + + G  ++LNV+ A ++ LY
Sbjct: 211 ELLAHTTQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 265

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 109/257 (42%), Gaps = 29/257 (11%)

Query: 40  SRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF-----PV 93
            R     E  FL  GV  V  A+  P    + L+A        D    +   F      V
Sbjct: 18  ERKARDREGKFLVEGVRMVREAMKRPELVEYVLVAC-------DVTGEMEEEFWRDAASV 70

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILR 152
             + P+ + +I   E     +A+   P+     +++  S  L++++D++ DP N+G ILR
Sbjct: 71  YRIRPELVKEITDTENPSGIVAVCRKPVWD--WESIPESDGLILIVDNLRDPGNLGTILR 128

Query: 153 SAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP-YIRISNLTDALQKMHSWGF 207
           +A A   D +     T   Y+P     + +S+ GA+ H P + R+ N  D ++++   G+
Sbjct: 129 TAWAAGVDAVFLLKGTVDMYNPK----VIRSSMGAVFHFPVFERVGN--DEVRELCHRGY 182

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + +     +            +A+++G E  G+    +E   S   + +   + +LN + 
Sbjct: 183 RLVVADPKASLVFTDADYYGNVAVVIGGETAGISAVFEELPASRVRIPLREGVDSLNAAV 242

Query: 268 AAAVALY--ITQNHFAK 282
           A  + LY   +Q H  +
Sbjct: 243 ACGIILYEAWSQRHLVR 259


>gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
 gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
          Length = 246

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 5/143 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S  +++LDH+NDP N+G ++RSA AF  + II T+      +    +++ G++  +  ++
Sbjct: 98  SNRVLLLDHINDPGNMGTMIRSAEAFGFNDIILTEGCVDIYNEKSLRASMGSVFRLKLVK 157

Query: 192 ISNLTDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +SN  D +  + S + F    +     +  +  ++N  I L +G E  GL    +    S
Sbjct: 158 LSN--DEIVNLKSRYKFLASHMEGCDVRKYDASLEN--IILAIGNEANGLSDFLRSLTDS 213

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
              + M G I++LN + AA++ +
Sbjct: 214 FVKIAMQGKIESLNAAIAASIMM 236


>gi|271967363|ref|YP_003341559.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
           43021]
 gi|270510538|gb|ACZ88816.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
           43021]
          Length = 276

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++L+ VL HV DP N G +LR+A A   D ++ T       +    ++++G+L H+P  
Sbjct: 115 GARLVAVLAHVRDPGNAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHLPVT 174

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
               +  A+Q++   G + +      K+ L+    +   A I G E  GL  +    A  
Sbjct: 175 TGVPVAQAVQRLKDAGLRVLAADGAGKQTLDDVDLSGPTAWIFGNEAWGLPEEILRLADE 234

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  + + G  ++LN++ AAAV LY
Sbjct: 235 VVRVPIHGRAESLNLATAAAVCLY 258


>gi|159901149|ref|YP_001547396.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894188|gb|ABX07268.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 262

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 17/253 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN--NPSRKIF---QLLATKNALARL 81
           H  Y +    ++K RH+ +     + GV  V  ALN   PS  ++   QL +T+     L
Sbjct: 13  HVKYLRSLLRSRKDRHSER--RFVVEGVRLVGEALNFATPSLLLYVPEQLASTERGQQLL 70

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           D  A LP+ F      P  +  +   E     +A+   P  +      +++ L+++LD V
Sbjct: 71  DLIAQLPNAFATT---PAILAGLSDVETPQGIIAVIPMPQFTS-----QSASLILMLDGV 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LRSA A     ++     +   S  + +S  G    +P +   N   AL  
Sbjct: 123 QDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRSGMGVHFRLPIVDGLNWETALPL 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +     Q      DS    +Q        LI+G E  G+   T   ++++  + M G ++
Sbjct: 183 IEHCQ-QRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYSSTIT-IPMLGSLE 240

Query: 262 ALNVSNAAAVALY 274
           +LN + A +V L+
Sbjct: 241 SLNAAVAGSVLLF 253


>gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4]
 gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4]
          Length = 261

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 114/250 (45%), Gaps = 17/250 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +++KK+QS     R   Q    +L  G H +  AL N +  I +++ ++  +       +
Sbjct: 19  KNWKKLQS-----RRGRQKAGAYLIEGFHLIEEALKNHA-IILEIMISEEVVV-----GD 67

Query: 87  LPHPFPVKTVPPQT-IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +P     K V   T I K++ +    QG+      +    LD    ++  + LD+V DP 
Sbjct: 68  IPEFDEAKQVEISTEIAKLLSETETSQGIFAVVKKI--DQLDKPILTKPFLFLDNVQDPG 125

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A A    G++  K      ++ + +S  G+  H+P  +  +L +        
Sbjct: 126 NVGTMVRTADAAGFGGVVLGKGSVDLYNSKVLRSMQGSHFHLPVYQ-GDLNEWFDLFFEL 184

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            F   G   + +    +EI+   +  L++G EG G+  +  +  T   ++ + G  ++LN
Sbjct: 185 EFPVFGTELNEEAVSYREIEPQAVYGLVMGNEGNGMAAELLKRTTKNLYIPIVGQAESLN 244

Query: 265 VSNAAAVALY 274
           V+ AA + ++
Sbjct: 245 VAVAAGILMF 254


>gi|323356730|ref|YP_004223126.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323273101|dbj|BAJ73246.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 265

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 1/145 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ + + V DP N+G I+R+A A   D ++ T R     +  + +S +G+L H+P    
Sbjct: 114 RLIAICEEVRDPGNLGTIIRAADAAGADAVVLTGRTVDPYNPKVVRSTTGSLFHLPVAVD 173

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             L   ++++H  G + +    D    L  +++ ++  A + G E +GL       A   
Sbjct: 174 LELAHVVERVHEAGLRVVAADVDGGDFLASRDLLSEPTAWLFGNEARGLDEAALAHADLS 233

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
             L + G  ++LN++ AA+V LY T
Sbjct: 234 LRLPIFGRAESLNLATAASVCLYET 258


>gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 262

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 76/157 (48%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TA     T + + + +L ++++ + DP N+G I+R+A A   D I  +      ++  + 
Sbjct: 96  TARFQPRTEEEITDFRLGLIIERLQDPGNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVL 155

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++++GA   +P    S+LT  ++K  + G   +    ++ +   Q        ++LG EG
Sbjct: 156 RASAGAWFQVPIFVTSDLTTVIKKHKNHGVNIVATLPNATETYWQLQFTQPTLILLGNEG 215

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL       A  +  + +   +++LNV+ A A+ LY
Sbjct: 216 SGLSNSLIALADELVSIPLSQGVESLNVAIATALLLY 252


>gi|227488138|ref|ZP_03918454.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092000|gb|EEI27312.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 436

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V    N+P N G ++R A A   D ++        +S   A+S++G+L HIP  R 
Sbjct: 213 KLVSVPVETNEPGNAGTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARE 272

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATS 250
            N+   +  +   G      ++D +  L   +++ +   A + G E  GL  + Q  A  
Sbjct: 273 RNIMKVVSMLRERGLAIAATAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEEVQAQADY 332

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              + + G  ++LN++ AA++ L+ +  + AK
Sbjct: 333 RVRIPIRGRAESLNLATAASICLFESSKYQAK 364


>gi|24380097|ref|NP_722052.1| putative rRNA methylase [Streptococcus mutans UA159]
 gi|24378093|gb|AAN59358.1|AE015001_3 putative rRNA methylase [Streptococcus mutans UA159]
          Length = 246

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L+ V DP N+G I+R+A A + D +  +++ +   ++   +S  G+  H+P  R+ NL
Sbjct: 105 LLLEDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSMQGSHFHLPIYRV-NL 163

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              +  + +    TI  + SD     +   K +  ALI+G EG+G+  +  E A  + H+
Sbjct: 164 LSLVNDLKNADVTTIATTLSDHSCDYKSLKKVENFALIMGNEGQGITSEMTEQADVLTHI 223

Query: 255 HMPGIIKALNV 265
            MPG  ++LNV
Sbjct: 224 TMPGRAESLNV 234


>gi|262373126|ref|ZP_06066405.1| SpoU rRNA methylase [Acinetobacter junii SH205]
 gi|262313151|gb|EEY94236.1| SpoU rRNA methylase [Acinetobacter junii SH205]
          Length = 258

 Score = 56.6 bits (135), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 23/232 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           L G H   + L    RKIF L  T+ AL          HP   + +        +  E +
Sbjct: 35  LEGTHLCLSWLQQ-QRKIFSLFTTEQAL---------DHPELQEIIEIHQGHIFIISEVL 84

Query: 111 HQGLAL--ETAPLLSPTLDAVRNSQLL------MVLDHVNDPHNIGAILRSAVAFSCDGI 162
           ++ L+    T P L+  +D  + SQ +      ++L++V DP N+G +LRSA A +   I
Sbjct: 85  YKDLSTLGTTLPCLA-IVDLPKTSQTIDFKADTLILENVQDPGNVGTLLRSAAAANIKQI 143

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I T+  +   S  + ++  GA   +       LTD L K     F T   SS     L  
Sbjct: 144 ICTQGSASLWSPRVLRAGMGAHFSVNCFENFQLTDILPKFEIPVFVT---SSHRSTSLYS 200

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +        ILG EG+G+     E A ++  +  PG  ++LNV+ A ++  +
Sbjct: 201 KDLTQACVWILGNEGQGVSDYALEHAEAVT-IPQPGGQESLNVAIAGSICFF 251


>gi|183221427|ref|YP_001839423.1| putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911515|ref|YP_001963070.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167776191|gb|ABZ94492.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779849|gb|ABZ98147.1| Putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 285

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALE 185
           +N    ++ D  +D  N G++LRSA AF  D +     +   Y P     + +S+ G L 
Sbjct: 130 QNKPFYLLFDRPSDLGNFGSLLRSADAFQVDCVFVIGHSIDVYDPK----VIRSSLGTLF 185

Query: 186 HIPYIRISNLTDALQKMHSW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           H   + ++     ++ +       G   +G  S     L +      I LILG E KG+ 
Sbjct: 186 HTKLVFVNEFESLVRFVQMEKKRNGLVVVGSDSSGDSNLREVSIQTPILLILGNEKKGMS 245

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            + Q     +  + M G++ +LNVS A ++ L+ +T+N 
Sbjct: 246 VQLQSICDRIVKIPMLGVVNSLNVSCAGSILLWEVTRNR 284


>gi|212691896|ref|ZP_03300024.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
 gi|212665568|gb|EEB26140.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
          Length = 254

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI 
Sbjct: 61  PVYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIF 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++ T+      +    + + G++  +P+  +      L K+   GF+T  
Sbjct: 121 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDGTIGDLNKL---GFRTAA 177

Query: 212 LS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKT 244
           ++ +D    ++  I     ++A+++G EG+GL  KT
Sbjct: 178 MALTDDSISIDHPILAAEPRLAIVMGTEGEGLSYKT 213


>gi|294672913|ref|YP_003573529.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294472688|gb|ADE82077.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 247

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 11/186 (5%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           K V PQ  +K+  + +    +A+      +     ++ S L++VL+ V  P N+GAILRS
Sbjct: 59  KNVSPQVYEKMAYRGSTEGHIAVVRCKEHTLEKLQLKESPLIVVLESVEKPGNLGAILRS 118

Query: 154 AVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY-IRISNLTDALQKMHSWGFQ 208
           A A   D +I     T  Y+P+    + +++ G +  +P  +  S    A  K H     
Sbjct: 119 AEAAGIDALIVCDPLTDMYNPN----VIRASIGGVFCVPTAVCSSQECIAFLKEHGIKIL 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           T  L  DS +  + ++     A+++G E  GL  + +E A +   + M G + +LNVS +
Sbjct: 175 TAQL-QDSYEYYDYDMTQGT-AIVMGTESTGLTNQWREAADAHIRIPMLGRLDSLNVSVS 232

Query: 269 AAVALY 274
           AA+ +Y
Sbjct: 233 AAILMY 238


>gi|148825296|ref|YP_001290049.1| rRNA methylase [Haemophilus influenzae PittEE]
 gi|148715456|gb|ABQ97666.1| rRNA methylase [Haemophilus influenzae PittEE]
          Length = 234

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 7/144 (4%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            V  + + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +
Sbjct: 49  VVDSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGV 107

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+   F    I+     +   +A + + A G  E+I  +   ++  AL ++   G+Q I
Sbjct: 108 LRTCAYFGVKNIVADNVENLYSAASM-RVAEGGAEYIRVLETDDIDSALMQLRKSGYQVI 166

Query: 211 GLSSDSK-KPLEQEIKNDKIALIL 233
            +S + +  PL++    +K+  +L
Sbjct: 167 HVSHNKQGDPLDKVRLKNKVVFVL 190


>gi|29841334|gb|AAP06366.1| similar to GenBank Accession Number AP001507 tRNA/rRNA
           methyltransferase in Bacillus halodurans [Schistosoma
           japonicum]
          Length = 179

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 23/152 (15%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LDHV D  N G+ILRSA  F    +I +     S S +++K + GA+E I + R+++
Sbjct: 19  VLLLDHVMDIMNFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGAMESIRFYRLTD 78

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-------------NDK--------IALIL 233
               ++ +   GF  +G   +++ P  +  K             ND         + L L
Sbjct: 79  TVMDMKSLSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPLVLAL 138

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+E +GL      +   +  L +PG+   LN+
Sbjct: 139 GSESRGLSENILNSCDLL--LRIPGLAIQLNL 168


>gi|327470414|gb|EGF15870.1| SpoU rRNA methylase [Streptococcus sanguinis SK330]
          Length = 246

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V DP N+G I+R+A A   DG+  +   +   +    +S  G+  H+P  R+ + 
Sbjct: 105 LFLEDVQDPGNVGTIIRTADAAGFDGVFISSSSADIYNLKTLRSMQGSHFHLPVYRM-DT 163

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
            D ++   S     +  +        +E+ + +  AL++G EG+G+ P+    A  + H+
Sbjct: 164 ADFIRLARSSRLPILASTLSFASIDYREVGSKESFALVMGNEGQGISPEMTAAADILIHI 223

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G  ++LNV+ AA + ++
Sbjct: 224 SMRGQAESLNVAVAAGILIF 243


>gi|159899036|ref|YP_001545283.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892075|gb|ABX05155.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 266

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L+ V +P N+GAI+R+  A  C+G+I    TT  Y P+      +++ G+L  +  +R
Sbjct: 120 VALNGVGNPGNLGAIMRTCDAVGCEGLILIGDTTDPYHPAA----IRASMGSLFALRMVR 175

Query: 192 ISNLTDALQKMHSW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +       +  +W    G+  IG + D ++  +         L++G+E  GL    Q  
Sbjct: 176 TT-----FDEFAAWKQTNGYHVIGTTPDVEQEYQTISYPSPAILLMGSERLGLSVGEQSV 230

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++  + M G   +LN+  A ++ LY
Sbjct: 231 CDTLVRIPMAGTCDSLNLGVATSIVLY 257


>gi|304312834|ref|YP_003812432.1| hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
 gi|301798567|emb|CBL46797.1| Hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
          Length = 565

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ L+ + +PHNIGAILR A  F    I+  +  S + S    ++A G  EH+  +   
Sbjct: 417 CILALEDLGNPHNIGAILRVAAHFGVSSIV-VRDASLARSGAALRTAEGGGEHVRLLEAD 475

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + +  L      GF  +  SS     L       ++ L++G E  GL    QE   S   
Sbjct: 476 DFSRMLAACRREGFTVVSTSSHEGTSLFAAPLPARVVLLIGQESTGLSSSLQE--GSDLK 533

Query: 254 LHMPGI--IKALNVSNAAAVAL 273
           + +PG   +++LNVS AA + L
Sbjct: 534 ISIPGTKNVESLNVSVAAGILL 555


>gi|315083589|gb|EFT55565.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA2]
          Length = 240

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +P+ R+ +
Sbjct: 91  LVVCEDIVDHTNVGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLED 150

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETA 248
               L ++   GF    +          E   D      K+AL++G EG GL       A
Sbjct: 151 WAGGLGELRDHGFTVAAMELSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQA 210

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G + +LNV+ AAAVA Y
Sbjct: 211 DVVVRIPMAGGVDSLNVAAAAAVACY 236


>gi|120601954|ref|YP_966354.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120562183|gb|ABM27927.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
          Length = 196

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHI 187
           R   L +VL +++DPHN+ AI RS  AF   G+     Y    +  A+  K+++ A + +
Sbjct: 20  RQKDLTLVLANIHDPHNVSAIYRSCDAF---GVAQVHLYYTDTAFPALSGKTSASARKWV 76

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +R  +    +  + + G Q +  S S   KP+         A+I+G E  G+  +  +
Sbjct: 77  DTVRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVD 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
                 ++ M G+I++ NVS AAA+ L
Sbjct: 137 VVDGEVYIPMYGMIQSFNVSVAAAILL 163


>gi|290579924|ref|YP_003484316.1| putative rRNA methylase [Streptococcus mutans NN2025]
 gi|254996823|dbj|BAH87424.1| putative rRNA methylase [Streptococcus mutans NN2025]
          Length = 246

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L+ V DP N+G I+R+A A + D +  +++ +   ++   +S  G+  H+P  R+ NL
Sbjct: 105 LLLEDVQDPGNVGTIIRTADAAAFDAVFVSEKTADIYNSKTLRSMQGSHFHLPIYRV-NL 163

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              +  + +    TI  + SD     +   K +  ALI+G EG+G+  +  E A  + H+
Sbjct: 164 LSLVNDLKNADVTTIATTLSDHSCDYKSLKKVENFALIMGNEGQGITSEMAEQADVLTHI 223

Query: 255 HMPGIIKALNV 265
            MPG  ++LNV
Sbjct: 224 TMPGRAESLNV 234


>gi|251810585|ref|ZP_04825058.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876415|ref|ZP_06285282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           SK135]
 gi|293366881|ref|ZP_06613557.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805745|gb|EES58402.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295440|gb|EFA87967.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           SK135]
 gi|291319182|gb|EFE59552.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329729977|gb|EGG66368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU144]
 gi|329734456|gb|EGG70769.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU045]
 gi|329736238|gb|EGG72510.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU028]
          Length = 246

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 38/236 (16%)

Query: 42  HTSQPE--NLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPP 98
           + SQ E   LF+     +S+++ + +++++Q+ L    AL+               TV P
Sbjct: 42  YQSQIEVIQLFIVDTDRMSSSIIDYAKEVYQINLKVAEALS--------------GTVTP 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           Q    I+ K                PT D     Q+L++ D + DP N+G ++R+A A  
Sbjct: 88  QGFFAIIKK----------------PTYDKTLAKQVLLI-DRIQDPGNLGTLIRTADAAG 130

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D I+  K  +      + +++ G++ HIP I      D    +H +     G + ++  
Sbjct: 131 LDLIVMEKGTADPFQDKVIRASQGSIFHIPVI----FDDINNYIHQFNGPVYGTALENAV 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                      ALILG EG+G+     +  T    + + G  ++LNV+ A ++ +Y
Sbjct: 187 SFNDIEAQANFALILGNEGEGVNSDLLKETTQNLTIPIYGKAESLNVAIAGSILMY 242


>gi|328554485|gb|AEB24977.1| RNA methylase [Bacillus amyloliquefaciens TA208]
          Length = 248

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+++D V DP N+G ++R+A A   D ++     +   S    +SA G+  HIP ++   
Sbjct: 106 LLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPILK-RP 164

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + + ++ S G    G + ++    +     +  ALI+G EG G+     +      ++
Sbjct: 165 LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIVGNEGAGVDAGLLQKTDLNLYV 224

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LNV+ AAA+ +Y
Sbjct: 225 PLYGQAESLNVAVAAAILVY 244


>gi|308174562|ref|YP_003921267.1| RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|307607426|emb|CBI43797.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|328912890|gb|AEB64486.1| putative RNA methylase [Bacillus amyloliquefaciens LL3]
          Length = 257

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+++D V DP N+G ++R+A A   D ++     +   S    +SA G+  HIP ++   
Sbjct: 115 LLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPILK-RP 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + + ++ S G    G + ++    +     +  ALI+G EG G+     +      ++
Sbjct: 174 LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIVGNEGAGVDAGLLQKTDLNLYV 233

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LNV+ AAA+ +Y
Sbjct: 234 PLYGQAESLNVAVAAAILVY 253


>gi|262091753|gb|ACY25342.1| rRNA methylase [uncultured actinobacterium]
          Length = 196

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 9/152 (5%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           ++ + + + +++ D ++DP N+G I RSA A    G++ T     + ++ + +S++G++ 
Sbjct: 41  VEELESCEWIVIADQISDPGNLGTIFRSAEAAGASGVVLTPGTVEAFNSKVVRSSAGSMF 100

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSK---KPLEQEIKNDKIALILGAEGKGLRP 242
           +IP      + +  Q     GF  +G SS  +   +P  +     KIA+++G E  G+  
Sbjct: 101 YIPVFEDITIDEVKQA----GFSIVGTSSHEQRGSRPFTEASLTGKIAIVVGNEAHGM-- 154

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              E       +   G  ++LNV+ AA V  +
Sbjct: 155 DDAELVDQWITIPHRGRSESLNVAMAATVVCF 186


>gi|194337498|ref|YP_002019292.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309975|gb|ACF44675.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 269

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 16/239 (6%)

Query: 47  ENLFL-YGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTID 102
           E LFL  G+ TV    LN PS ++   L  +   A +   A    P+  K  ++  +   
Sbjct: 29  ERLFLAEGLRTVRELCLNLPSEEMLVALLVREGEAEV---ARFAQPWKGKLFSIGEKECA 85

Query: 103 KIVGKEAVHQGL--ALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAF 157
           ++  + A  QG+         + P  +AV    +  L++ LD V DP N+G ILR+AV F
Sbjct: 86  QL-SETATSQGIFGVFRQQRPVEPAAEAVSATSDKSLIVALDDVQDPGNVGTILRTAVWF 144

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I +   +   +A   +S +G++  I +  +  L   L      G+     S + K
Sbjct: 145 GADALICSTGTADRYNAKAVRSCAGSIYAIRHYGVDRLERELLWFKKQGYSITSSSLEGK 204

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNAAAVAL 273
              E      K  L++G E  G+    +  A  +  +   G    +++LN + +AA+ +
Sbjct: 205 DFREFSSWPAKQVLVIGNEANGISEPVKALADRLVRIPHSGRSVRVESLNAAVSAAILM 263


>gi|296534733|ref|ZP_06897111.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296264940|gb|EFH11187.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 176

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 11/119 (9%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHN 146
           P + VPP  + KI G    H G+    AP   P L A     +    LL VLD V +PHN
Sbjct: 51  PYREVPPAELAKIAGTTH-HGGIVAIAAPRAVPALPAALPQTLFGPGLLPVLDGVGNPHN 109

Query: 147 IGAILRSAVAFSCDGIITT---KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +GAI RSA  F C  ++ +   ++   S+SA   +++ G LE +   R  +L  AL  +
Sbjct: 110 LGAIARSAAFFGCTSLLLSGDPRQAGLSDSAW--RTSEGGLEALSLYRAPDLPAALGAL 166


>gi|257869609|ref|ZP_05649262.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257803773|gb|EEV32595.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 255

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A A    G+      +   S  + +S  G+  H+P +   ++
Sbjct: 113 LILDNVQDPGNVGTMIRTADAAGFAGVFLGTGTADRYSTKVLRSMQGSNFHLPILE-GDV 171

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHL 254
              +QK+ + G    G   + +     E+ K    A ILG EG+G+ P          ++
Sbjct: 172 PAFIQKLKAQGTAIYGTELNKEAVSYTELSKKGTAAFILGNEGQGVHPDILGLTDQNVYI 231

Query: 255 HMPGIIKALNVSNAAAVALYI 275
            + G  ++LNV+ AA + +Y 
Sbjct: 232 PIYGQAESLNVAIAAGILMYF 252


>gi|324998026|ref|ZP_08119138.1| RNA methyltransferase [Pseudonocardia sp. P1]
          Length = 280

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 8/149 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            + V   ++DP N+G ++R A A  CD ++         +    ++++G++ H+P  R  
Sbjct: 118 FVTVCAGISDPGNVGTVVRVADAAGCDAVLLAGDTVDPHNGKAVRASTGSVFHLPLARDR 177

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE------QEIKNDKIALILGAEGKGLRPKTQET 247
           +    +    S G  T  L +D +  L+        I    +A ILG+E  G  P     
Sbjct: 178 DAQGVVAACRSAGLTT--LVADGRGELDLHAPEAAPILAGPVAWILGSEAHGPGPDVFAA 235

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           A     + + G  ++LN++ AAA+ LY T
Sbjct: 236 ADHRVRVPIHGRAESLNLATAAAICLYAT 264


>gi|312793386|ref|YP_004026309.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180526|gb|ADQ40696.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 270

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 1/163 (0%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ L     +   ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK     
Sbjct: 104 QGI-LAECNFVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDI 162

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +    ++  G+L H+  +R +     ++ +    F     +      + + + + +  +
Sbjct: 163 YNPKTIRATMGSLFHMQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCV 222

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++G E +G+     + AT    + M G  ++LN + AA++ LY
Sbjct: 223 VIGNESEGVSDSFAKMATRKIKIPMAGKAESLNAAVAASIVLY 265


>gi|296394203|ref|YP_003659087.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181350|gb|ADG98256.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 295

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 7/156 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VL    DP N+G  LR+A AF     +         +   A+S++G+L  +P +R  
Sbjct: 131 LVVVLVEPRDPGNVGTALRAAHAFGASAFLVLGDGVDPHNPKAARSSAGSLFAVPVVRER 190

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++  AL ++   G      ++D+  PL+  + +     A + G E  GL     + A   
Sbjct: 191 DVAAALGQLRDAGLLLFATTADADLPLDEAESLLQRPCAWLFGNEASGLPEPAAQAADRR 250

Query: 252 AHLHM---PGI--IKALNVSNAAAVALYITQNHFAK 282
             + M   PG   I++LN++ AA + LY T    ++
Sbjct: 251 IAVPMRPTPGFAPIESLNLAVAAGICLYETARQRSR 286


>gi|317055279|ref|YP_004103746.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315447548|gb|ADU21112.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 269

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + +  N+GAI RSA A   D ++ T   S        + + G +  +P+  I    
Sbjct: 118 VLEDIMNQTNMGAIFRSAAALGVDAVLLTDGCSDPLFRRTIRVSMGTVFQVPWKFIGKSD 177

Query: 197 DA-LQKMHSWGFQT--IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA 252
              + ++   GF T  + L +D+    ++ +K  +K+A++LG EG GL+  T E      
Sbjct: 178 SGYIYRLKKEGFLTAAMALRADTVSIEDEGLKRAEKLAIVLGTEGDGLKASTIEDCDMTI 237

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M   + +LNV+ A AVA +
Sbjct: 238 KIPMAHGVDSLNVAAAGAVAFW 259


>gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 299

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   + ++ T      Y+P       +++ G+L H+P
Sbjct: 136 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 191

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  +   G + +       + L+ E+    +    A + G E  GL  +T
Sbjct: 192 VAIGVPVEQAVAGLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEET 251

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    ++  + + G  ++LN++ AAAV LY
Sbjct: 252 RALTDAVVRVPIHGKAESLNLATAAAVCLY 281


>gi|288927311|ref|ZP_06421158.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330145|gb|EFC68729.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 267

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 79/151 (52%), Gaps = 6/151 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +A  ++  + V+D V D  NIGAI RSA A   D ++  K      +    + + G++  
Sbjct: 114 EACADATRVCVIDGVTDTTNIGAIFRSAAALGIDAVVLAKNACDPLNRRAVRVSMGSVFL 173

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPK 243
           +P+   +     L ++ + GF+T  + L+ +S    + ++K + ++A+++G EG GL  +
Sbjct: 174 VPW---TWSEQPLAELSALGFRTAAMALTHNSISLDDAKLKAEPRLAIVMGTEGDGLPHQ 230

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A  +  + M   + +LNV+ A+AVA +
Sbjct: 231 VIAQADYVVRIPMAHGVDSLNVAAASAVAFW 261


>gi|281358305|ref|ZP_06244787.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281315132|gb|EFA99163.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 273

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 11/151 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           VR + L +V + V  P N+G++LRSA A   DG I   + +   +  + ++++GAL  +P
Sbjct: 115 VRPNGLYLVAEAVEKPGNLGSMLRSADAAGVDGFIICNKCTDIYNPNVIRASTGALFSVP 174

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPK 243
                N     Q+ + W  +   + + +  P   +I  D      +A+++G E  GL   
Sbjct: 175 LAEAEN-----QEAYDW-LKKNNIRTLAATPHTDQIYTDVDMTQAVAIVVGTEQTGLTEL 228

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E +     + M G I +LNV+ A  + LY
Sbjct: 229 WMEHSDLPVRIPMLGKIDSLNVATATTILLY 259


>gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 289

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   + ++ T      Y+P       +++ G+L H+P
Sbjct: 126 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 181

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  +   G + +       + L+ E+    +    A + G E  GL  +T
Sbjct: 182 VAIGVPVEQAVAGLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEET 241

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    ++  + + G  ++LN++ AAAV LY
Sbjct: 242 RALTDAVVRVPIHGKAESLNLATAAAVCLY 271


>gi|70726825|ref|YP_253739.1| hypothetical protein SH1824 [Staphylococcus haemolyticus JCSC1435]
 gi|68447549|dbj|BAE05133.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 246

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 78/149 (52%), Gaps = 10/149 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHI 187
           V+ ++ ++++D + DP N+G ++R++ A   D I+  K  + P +  VL +++ G++ HI
Sbjct: 101 VKQAKQVLLIDRIQDPGNLGTLIRTSDAAGIDLIVMEKGTADPYQDKVL-RASQGSVFHI 159

Query: 188 PYIRISNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           P I       A  K    GF     G + ++ +P ++    D  AL+LG EG+G+     
Sbjct: 160 PVIT------ADLKTFIAGFNGPVYGTALENAQPYKEVASQDIFALLLGNEGEGVNKALL 213

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +    + + G  ++LNV+ A ++ LY
Sbjct: 214 NETSQNLTIPIYGKAESLNVAIAGSILLY 242


>gi|315655513|ref|ZP_07908412.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490168|gb|EFU79794.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 275

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 4/157 (2%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P++       L ++L    DP N G ++R A A     +   +  + + S  + +++ G+
Sbjct: 113 PSVTGSPEGNLALILPATQDPGNAGTLIRLADACGASTVFMGQDCADATSPKVIRASVGS 172

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSK-KPLEQEI-KNDKIALILGAEGKG 239
           + H+P  R  +L   ++ + + G+  +G  LS D    P+      N K+A ++G E  G
Sbjct: 173 VFHVPTPRFQDLAAVVKALRAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHG 232

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L    +     +  + M G  ++LNV++AA + L+++
Sbjct: 233 LDATEESWCDVLVSIPMFGRAESLNVTSAATLCLWMS 269


>gi|302206081|gb|ADL10423.1| Putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           C231]
          Length = 289

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V    ++P N G ++R A A   D II        +     +S++G+L HIP +R 
Sbjct: 133 RLVCVPVETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVRE 192

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
            NL      + + G + +  ++  +  L+   ++ +   A ++G E  GL     E A  
Sbjct: 193 PNLQRVWDSLKARGLKILATTAQGEISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADH 252

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT-------QNHF 280
              + + G  ++LN++ AA+V LY +       QNH 
Sbjct: 253 RVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNHL 289


>gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 277

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 8/145 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD V DP N+G ILR+AVA    GI+  +  +   +  + ++A G L ++   +  
Sbjct: 127 LYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMNVAQGV 186

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKND---KIALILGAEGKGLRPKTQETAT 249
              D LQ       +++ L + +   + QE I  D     A++ G E  G+       A 
Sbjct: 187 EEKDFLQWAQE---RSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNEANGVSSAILARAR 243

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            + ++ M G +++LNVS AAAV LY
Sbjct: 244 RV-YVPMFGPVESLNVSAAAAVILY 267


>gi|189913162|ref|YP_001965050.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|189913499|ref|YP_001964727.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167777838|gb|ABZ96137.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167781567|gb|ABZ99863.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 261

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 14/150 (9%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS---ASGALEHIPYIR 191
           +++++ + D  NIG+ILR+A AF    I+     S S S  L +S   + GA+  +   +
Sbjct: 111 ILIINAIVDSENIGSILRNAAAFGIKSILFD---SKSASPYLRRSVRVSMGAIFQLQLAK 167

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-------SKKPLEQEI-KNDKIALILGAEGKGLRPK 243
            +NL D++Q++       + L+         SK    QEI K + + LI+G E  G+   
Sbjct: 168 TTNLPDSIQRLKERPTNLVALALPKENSHHLSKTKTIQEIGKLENLVLIVGNEANGIEEG 227

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             + +  + ++ M   I +LNVS+A AVAL
Sbjct: 228 VLDASDVIGYIPMQNNIDSLNVSHALAVAL 257


>gi|257469642|ref|ZP_05633734.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317063878|ref|ZP_07928363.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689554|gb|EFS26389.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 255

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 84/168 (50%), Gaps = 7/168 (4%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ +   P +  +L+ ++ +  ++VLD + DP N+G I+R A A     II TK     
Sbjct: 88  QGVIV-VYPYIKGSLEKLQKN--IVVLDKIGDPGNLGTIIRVADAAGFKDIILTKGSVDC 144

Query: 172 ESAVLAKSASGAL--EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +  + +S+ G++   +I Y+    L   L++   +  +   L  DS    E ++  ++ 
Sbjct: 145 YNEKVVRSSMGSILNMNILYMEEEELITFLKR-EGYKIEVTALDKDSVSYTEMKL-TERN 202

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A++ G+EG G+     +       + + GI ++LNV+ A  + LY T+
Sbjct: 203 AIVFGSEGDGVSQNFLKMCDEKIIIPIYGIAESLNVAMACGIILYKTK 250


>gi|212638387|ref|YP_002314907.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559867|gb|ACJ32922.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 254

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 5/148 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V + Q  + +D V DP N+G I+R+A A   D ++  +      +A + ++  G+L H P
Sbjct: 105 VADVQTALFIDAVQDPGNVGTIIRTADAAGIDAVVVGEGSVDIYNAKVIRATQGSLFHFP 164

Query: 189 YIR--ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            I+  I       Q  H       G S  +         +   ALI+G EG G+  K  +
Sbjct: 165 VIKGDIGQWIAHFQNRH---IPIYGTSLQNGVDYRSVSPSSSFALIVGNEGSGVNDKWLQ 221

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
             T+  ++ + G  ++LNV+ A  + LY
Sbjct: 222 QTTANLYVPIYGQAESLNVAVATGILLY 249


>gi|126696822|ref|YP_001091708.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543865|gb|ABO18107.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 237

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 16/162 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++VLD + DP N+G + R+A+A   D I       P    VL ++++GA+ ++P+ R  
Sbjct: 73  FILVLDRIQDPGNMGNLFRTALAAGVDAIFLAGGAHPLNQKVL-RASTGAVFNLPFKRYE 131

Query: 194 NLTDAL--------QKMHSWGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKG 239
              + +         ++ + GF+    SS +K      KP  +        LILG EG+G
Sbjct: 132 GTEEEIINSLLKSLSELSNEGFKIFSTSSFNKSSKKTSKPYWEIDWTKSTVLILGNEGQG 191

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  K QE       +    ++++LNV+   AV L + +   A
Sbjct: 192 IHKKIQEAFNETITIPHSELVESLNVA-CVAVPLLLERKRVA 232


>gi|300858366|ref|YP_003783349.1| hypothetical protein cpfrc_00948 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685820|gb|ADK28742.1| hypothetical protein cpfrc_00948 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330634|gb|ADL20828.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276319|gb|ADO26218.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           I19]
          Length = 285

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V    ++P N G ++R A A   D II        +     +S++G+L HIP +R 
Sbjct: 129 RLVCVPVETSEPGNAGTLIRVADAMGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVRE 188

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
            NL      + + G + +  ++  +  L+   ++ +   A ++G E  GL     E A  
Sbjct: 189 PNLQRVWDSLKARGLKILATTAQGEISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADH 248

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT-------QNHF 280
              + + G  ++LN++ AA+V LY +       QNH 
Sbjct: 249 RVCIPIRGRAESLNLATAASVCLYESSKTLLSDQNHL 285


>gi|294084964|ref|YP_003551724.1| tRNA/rRNA methyltransferase SpoU [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664539|gb|ADE39640.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 307

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 6/154 (3%)

Query: 126 LDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           LDAV    S+  + LD V DP N+G I+RSA A    GII     +   S    +++ GA
Sbjct: 148 LDAVTPDLSRPWVALDRVRDPGNLGTIMRSADAAGAKGIILIDDCTDPYSVEAVRASMGA 207

Query: 184 LEHIPYIRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           + ++  ++  N +D +     W     Q IG +  +         +  + +++G E  GL
Sbjct: 208 IFNVEIVQ-CNQSDFVAFTQQWTNQNGQIIGTALPASVDYRDADYSGALMILMGNEQAGL 266

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P   +  T +  L M G   +LN++ A  V LY
Sbjct: 267 PPSLMQLCTQLIRLPMLGRSDSLNLAVATGVTLY 300


>gi|253996869|ref|YP_003048933.1| tRNA/rRNA methyltransferase SpoU [Methylotenera mobilis JLW8]
 gi|253983548|gb|ACT48406.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera mobilis JLW8]
          Length = 263

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P L      + +++L+ + DP NIG++LR+A A   D +  +   +   S    +   GA
Sbjct: 104 PQLPVPEQPEFVLMLEDIQDPGNIGSMLRTAAASGVDVVYLSTSCTDVWSPKALRGGQGA 163

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +P +   +L +ALQ+     + T  +  +S   L  +  +   A ++G EG GLR +
Sbjct: 164 QFVLPIVERVDLINALQEFDGNSYAT-AMQGES---LYAQDLSAPTAFVIGNEGAGLRKQ 219

Query: 244 TQETATSMAHLHMP----GIIKALNVSNAAAVALY 274
           T    +    + M     G +++LN   AAAV L+
Sbjct: 220 TMAATSKRITIPMANTALGSVESLNAGAAAAVCLF 254


>gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
           artemidis F0399]
 gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
           artemidis F0399]
          Length = 277

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 10/146 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD V DP N+G ILR+AVA    GI+  +  +   +  + ++A G L ++   +  
Sbjct: 127 LYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMNVAQGV 186

Query: 194 NLTDALQKMHSWGFQ-TIGLSSDSKKPLEQE-IKND---KIALILGAEGKGLRPKTQETA 248
              D LQ    W  + ++ L + +   + QE I  D     A++ G E  G+       A
Sbjct: 187 EEKDFLQ----WAQERSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNEANGVSSAILARA 242

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             + ++ M G +++LNVS AAAV LY
Sbjct: 243 RRV-YVPMFGPVESLNVSAAAAVILY 267


>gi|303232390|ref|ZP_07319082.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481474|gb|EFL44542.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
           PB189-T1-4]
          Length = 390

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 13/202 (6%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRN-----------S 132
           A +    P + V    +D        HQG+ L T P   +   D +R             
Sbjct: 153 ACIARDIPCEYVSKAALD-AASSHGAHQGVMLVTKPFTYTEFADVLRTIDERAAATSALP 211

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL++VLDHV D  N+GA +RSA       +I     +        K+++GA+  +P +++
Sbjct: 212 QLVVVLDHVVDEGNLGACVRSAEIVGATAVIIANARAAQVGVGAYKTSAGAVLRVPIVQV 271

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +N+  A+ ++ + GF  +  +  +++ +        + L++G+E +G+    +++     
Sbjct: 272 ANVARAVLELKNHGFWAMAATEHAERAVWSSPTAGNVCLVMGSEQQGISALVRKSCDFEC 331

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            L   G+I++LNV+ AA V  Y
Sbjct: 332 KLPQRGVIESLNVAQAATVMCY 353


>gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
 gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
          Length = 229

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R + L ++++HV  PHN+ AILR     SCD +   + ++ S S        +A G+   
Sbjct: 18  RMADLTVLVEHVEKPHNLSAILR-----SCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P    + +  A+  +   GF+  G  L  D++   + +      A +LGAE  GL  + 
Sbjct: 73  VPLRDHATIASAVHHLKDRGFKLYGTNLGVDARDYRDCDFTG-PCAFVLGAEKWGLTEEA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS A A  L+
Sbjct: 132 TGLMDQAVFIPMRGMVQSLNVSVATATLLF 161


>gi|330844482|ref|XP_003294153.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
 gi|325075433|gb|EGC29321.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
          Length = 224

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 9/85 (10%)

Query: 111 HQGLALETAPLLSPTLD------AVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           HQG+ L+ +PL    +D      A +N++   L +VLD + DP N+G I+RS   F+ DG
Sbjct: 37  HQGVILDCSPLTVLNIDFLKPFKANKNTKRYPLWIVLDELWDPQNVGTIIRSCSFFNVDG 96

Query: 162 IITTKRYSPSESAVLAKSASGALEH 186
           I+ + + S   +   +K +SGA+E+
Sbjct: 97  IVISDKCSNPITPTASKCSSGAVEN 121


>gi|269956119|ref|YP_003325908.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304800|gb|ACZ30350.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 301

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 21/164 (12%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R S L+ VL  V DP N G ++R+A A   D ++         +  + +S +G+L H+P 
Sbjct: 133 RRSLLVAVLATVRDPGNAGTVIRAADAAGADLVVLAGDSVDVHNPKVVRSTAGSLFHVPV 192

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------------KIA 230
           +    L D +  +H  G     L++D   P + +   D                     A
Sbjct: 193 VSGVPLADVVDAVHERGLTV--LAADGAGPHDLDDLLDVAGPSHAGERGAGTPDLAASTA 250

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + G E  GL  K +E A ++  + + G  ++LN++ AA V LY
Sbjct: 251 WVFGNEAWGLPEKDRELADAVVRVPIRGRAESLNLATAATVCLY 294


>gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
 gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
          Length = 261

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 71/146 (48%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + + +L +V++ + DP N+G I+R+A A   DGI  +      +   + ++++GA   +P
Sbjct: 107 ITDFRLGLVIERLQDPGNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWFQVP 166

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S+L   ++K  + GF  +    ++ +            ++LG EG GL       A
Sbjct: 167 IFISSDLKRIVEKYKNNGFNIVATLPNTTQTYWHLQLTKPTLILLGNEGSGLSDSLVSLA 226

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + +   I++LNV+ A A+ LY
Sbjct: 227 NEIVSIPLSEGIESLNVAIATALILY 252


>gi|221632050|ref|YP_002521271.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
           5159]
 gi|221155367|gb|ACM04494.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
           5159]
          Length = 217

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 12/154 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASG-A 183
           A R   L +VL++V+DPHN+ A+LR     SCD +   +    Y+  E   L+++ SG A
Sbjct: 18  ARRQPDLTVVLENVHDPHNVSAVLR-----SCDAVGLLRVHLVYTLEEFPELSENVSGSA 72

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDK-IALILGAEGKGL 240
           L+ +  +   ++    + + S GF   T  L   ++     ++   K +AL+ G E +G+
Sbjct: 73  LKWLELVFHPSIEACYRTLRSQGFTIYTTYLGDPARSVDLYDLDLTKPVALVFGNEQRGV 132

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +    A     + M G++++LN+S A AV+LY
Sbjct: 133 SDEAVAGADGNFVIPMMGMVRSLNISVACAVSLY 166


>gi|261496523|ref|ZP_05992903.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307726|gb|EEY09049.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 344

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLP-HPFPVKTVPPQTIDKI 104
           E + +YG +   +        I +L AT     +L D  + L  H      +  + ++++
Sbjct: 106 EEMKVYGENACISLFQQRPGSIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDREEMERV 165

Query: 105 VGKEAVHQG----LALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            G E  H G    L  +TA  +L   L   +    L++LD VN+  N+G I+R+   +  
Sbjct: 166 TGTE--HHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGV 223

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GIIT    S + S+  A+ A G LE +  +   N   AL ++   G+Q + L+   + P
Sbjct: 224 KGIITENVDSLNSSSA-ARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLTRHKQAP 282

Query: 220 LEQEIK-NDKIALIL 233
              +IK  +K+  +L
Sbjct: 283 SLTKIKLAEKVVFVL 297


>gi|325285057|ref|YP_004260847.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324320511|gb|ADY27976.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 219

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187
           R + + + ++ V   HN  A++RS  AF      +I +K   P +  +    A GA + +
Sbjct: 29  RTNYITVAIEDVFQMHNTSAVIRSCDAFGVQTAHLIESKYSEPLDKNI----AMGAQQWV 84

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQE 246
              R +  T+ +  +   G++ I  S  +   L  + K +DKIAL  G E  GL  +  +
Sbjct: 85  TTPRYNTTTECIDTLRKDGYKIIATSPHTDSYLLDDFKIDDKIALFFGTEKSGLSQEVLD 144

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
            A     + M G  ++LN+S +AA+ L
Sbjct: 145 KADGYVKIPMVGFSESLNISVSAAILL 171


>gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 283

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 4/155 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L+ V + +L  VL HV DP N G +LR+A A   D +I T       +    ++++G+L 
Sbjct: 122 LERVGDVRLAAVLSHVRDPGNAGTVLRTADAAGADVVIFTDASVDPYNGKCVRASAGSLF 181

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLR 241
           H+P +    +  A+  +   G +        ++ L    +    +  +  + G E  GL 
Sbjct: 182 HLPVVVGVPVARAVDFLRGVGARVWAADGSGQRDLHAVADSGDLDGPVGWVFGNEAWGLP 241

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +T         + + G  ++LN++ AAAV LY T
Sbjct: 242 EETVALTDGAVSVPIYGGAESLNLATAAAVCLYTT 276


>gi|145630401|ref|ZP_01786182.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|144984136|gb|EDJ91573.1| rRNA methylase [Haemophilus influenzae R3021]
          Length = 351

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 19/202 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96
           ++ E + +YG +   A     +  I +L AT          L+ L  +    H      V
Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167

Query: 97  PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             + + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +LR
Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +   F    I+         SA   + A G  E+I  +   ++  AL  +   G+Q I +
Sbjct: 227 TCAYFGVKNIVADN-VENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHV 285

Query: 213 SSDSK-KPLEQEIKNDKIALIL 233
           S + +  PL++    +K+  +L
Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307


>gi|302868678|ref|YP_003837315.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|315504850|ref|YP_004083737.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|302571537|gb|ADL47739.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
 gi|315411469|gb|ADU09586.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 269

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 110/245 (44%), Gaps = 18/245 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAAL--NNPSRKIFQLLATKNALARLD-WD 84
           DY+ +     ++R    P  LF+  G   +  AL    P+R         + LA LD  D
Sbjct: 16  DYRALTDVELRTRW-EPPHGLFIAEGELVLRRALRAGYPARSYLVDAKRVDQLADLDTGD 74

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           A      PV    P  + +  G   VH+G+  +    PL S   + +  ++ +++L+ VN
Sbjct: 75  A------PVYAATPDVLQRATGFH-VHRGVLASFHRKPLRSAD-EVLAAARRVVILEDVN 126

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +  N+GAI R A A   D ++ +   +        + + G +  +PY ++ +    L ++
Sbjct: 127 NHTNLGAIFRGAAALGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYAKLDSWPGGLDQV 186

Query: 203 HSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            + GF  + ++ +    P+++    + ++ AL+LGAEG GL    Q  +     + M   
Sbjct: 187 RAAGFTVLAMTPAPDAVPMQRLTPAQRERAALLLGAEGPGLTAAAQAASDVRVVIPMRRG 246

Query: 260 IKALN 264
           + +LN
Sbjct: 247 VDSLN 251


>gi|157413860|ref|YP_001484726.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388435|gb|ABV51140.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 276

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 41/282 (14%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARL 81
           +N+   K+ ++F + S    Q +   + G H +   L    NPS+    +L T+  L + 
Sbjct: 6   KNNNLVKRFRTFKRGSSPKHQ-DFFCIEGTHLIEELLKSGKNPSK----ILVTEKWLRK- 59

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVH--------QGLALETAPLLSPTLDAVRNSQ 133
             + NL   F       Q++  IV +E +          G+A        P         
Sbjct: 60  --NQNLSRKFH------QSLINIVTEEVLASAISTINPDGIAALVEISTIPNYKFDTKDD 111

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++VLD + DP N+G++ R+A+A   D I       P    VL +++SGA+ H+P++R  
Sbjct: 112 FVLVLDRIQDPGNMGSLFRTALAAGVDAIFLAGGAHPLGQKVL-RASSGAVFHLPFLRFD 170

Query: 194 NLTDALQKMHSW--------GFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKG 239
              + +              GF+    SS++K   +      ++      ALILG EG+G
Sbjct: 171 GTEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSRSTALILGNEGQG 230

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  K QE       +    ++++LNV+   AV L + +   A
Sbjct: 231 IHKKIQEAFNETITIPHSELVESLNVA-CVAVPLLLERKRVA 271


>gi|255535982|ref|YP_003096353.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342178|gb|ACU08291.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
          Length = 265

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 24/255 (9%)

Query: 40  SRHTSQPE---------NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANL-- 87
           S+H+ +PE         + F++G+  V  A+   + K    +  +NAL   + ++     
Sbjct: 4   SQHSHKPESGQAEPNKKDDFIFGLRPVIEAIE--AGKTIDKIFMQNALQGDIYYELKTLL 61

Query: 88  -PHPFPVKTVPPQTIDKIVGKEAVHQGLA-------LETAPLLSPTLDAVRNSQLLMVLD 139
             H      VP + +++   K   HQG+         E+   + P L     +  L++LD
Sbjct: 62  SKHNIRPNYVPIEKLNRFTRKN--HQGVVAFISDVPFESIQDVLPQLFEEGKTPFLLILD 119

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N GAI R+A       II  ++ +   ++   K+++GA+ ++   +  NL  A+
Sbjct: 120 RLTDVRNFGAICRTAECVGVHAIILPEKGAAPINSDAIKTSAGAIYNLRICKEKNLAHAV 179

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +   G Q    S  ++K +         A+++G E  G+  +    +     L + G 
Sbjct: 180 DFLQQSGLQVFSASEKAQKLIYDVDFTQPCAIVMGNEETGISKEVLHHSDEKIKLPIEGK 239

Query: 260 IKALNVSNAAAVALY 274
            ++LNVS A    LY
Sbjct: 240 TQSLNVSVACGAILY 254


>gi|300774602|ref|ZP_07084465.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300506417|gb|EFK37552.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 176

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 7/161 (4%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T   V    L+++LD++   HN+GA  R+A AF  + II            + K+A GA 
Sbjct: 17  TFKKVEKIPLVIILDNIRSMHNVGAAFRTADAFLIEKIILCGITPQPPHREIHKAALGAT 76

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEI-KNDKIALILGAEGKGLR 241
           E + +   ++   A+  + S G++ IG+  ++DS+   +  I K+ K ALILG E +G+ 
Sbjct: 77  ESVDWSHEADTNTAVADLKSNGYEIIGIEQTTDSQMITDFTIDKSKKYALILGNEVEGIS 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +          +   G   +LNVS    + ++     FAK
Sbjct: 137 DEVLPNIDVFLEIPQLGTKHSLNVSVCGGIVMW----EFAK 173


>gi|293189810|ref|ZP_06608524.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292821225|gb|EFF80170.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 290

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 17/189 (8%)

Query: 110 VHQG-LALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +H+G LA    P+L P+LD +  +       + ++VL+++ D  N+GA  RSA A   D 
Sbjct: 103 LHRGALAAMQRPVL-PSLDELLATAHGGTPARRVVVLENLVDHTNVGAAFRSATALGVDA 161

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPL 220
           ++ T + +        + + G +  IP+ R+ +    +  +   GF    L+ SD    L
Sbjct: 162 VLVTPQCADPLYRRSVRVSMGTVFQIPWTRLDSWPGDITALQEAGFTVASLALSDDSVSL 221

Query: 221 EQ-------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +        +    ++A+++G EG GL  +T   +     + M   + +LNV+ A+AV  
Sbjct: 222 DDFASLPALQGPGARLAMVMGTEGDGLGHRTIAASDYTVKIPMDHGVDSLNVAAASAVVF 281

Query: 274 YITQNHFAK 282
           + T+   A+
Sbjct: 282 WATRGVGAQ 290


>gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 259

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL+ + DP NIG ILRSA A     II  +  +   S  + ++A GA   +     SNL
Sbjct: 115 VVLERIQDPGNIGTILRSAAAAGVRQIIAGEGCADLWSPKVLRAAMGAHFLLRLHPASNL 174

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q      F T  L+++S  PL +       A + G EG GL    + TAT    + 
Sbjct: 175 AVWRQTYREPLFAT-ALTANST-PLYRLNLRPPCAWLFGNEGGGLTAAARNTATRTVKIP 232

Query: 256 MPGIIKALNVSNAAAVALY 274
           M G  ++LNV+ AA V L+
Sbjct: 233 MSGATESLNVAMAATVCLF 251


>gi|326803177|ref|YP_004320995.1| RNA methyltransferase, TrmH family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651120|gb|AEA01303.1| RNA methyltransferase, TrmH family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 259

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 8/149 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD V DP N+G ++RSA AF+   I   K      S  + +S  G+  H+   ++  
Sbjct: 103 VLLLDGVQDPGNLGTLIRSADAFNYQDIYLGKGTVDPYSPKVVRSMQGSQFHVRLHQVV- 161

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSM 251
           L +A+  +   G+       +D  + LE     K  K  +ILG EG G+RP+    +   
Sbjct: 162 LEEAMASLRKAGYCLAATELNDQAQALETYNLKKRQKWGIILGNEGNGVRPEIIAASDIS 221

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++ M G  ++LNV+ A ++A++    HF
Sbjct: 222 LYITMLGQAESLNVAIAGSIAMH----HF 246


>gi|145628790|ref|ZP_01784590.1| rRNA methylase [Haemophilus influenzae 22.1-21]
 gi|144979260|gb|EDJ88946.1| rRNA methylase [Haemophilus influenzae 22.1-21]
          Length = 268

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 15/239 (6%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQ 99
           ++ E + +YG +   A     +  I +L AT     +    L + A     + V  V  +
Sbjct: 30  NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHV--VDSE 87

Query: 100 TIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +LR+  
Sbjct: 88  ELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCA 146

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F    I+     +    A + + A G  E+I  +   ++  AL  +   G+Q I +S +
Sbjct: 147 YFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSHN 205

Query: 216 SK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  PL++    +K+  +L          +++T   +  L  P I   LN++  A V L
Sbjct: 206 KQGDPLDKVRLKNKVVFVLSESSTESLATSEDTQVRLT-LASP-IKSGLNIAVNAGVLL 262


>gi|145638666|ref|ZP_01794275.1| rRNA methylase [Haemophilus influenzae PittII]
 gi|145272261|gb|EDK12169.1| rRNA methylase [Haemophilus influenzae PittII]
 gi|309750160|gb|ADO80144.1| Putative rRNA methylase [Haemophilus influenzae R2866]
          Length = 351

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 103/242 (42%), Gaps = 21/242 (8%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96
           ++ E + +YG +   A     +  I +L AT          L+ L  +    H      V
Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167

Query: 97  PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             + + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +LR
Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +   F    I+     +    A + + A G  E+I  +   ++  AL  +   G+Q I +
Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHV 285

Query: 213 SSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           S + +  PL++    +K+  +L          +++T   +  L  P I   LN++  A V
Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVLSESSTESLATSEDTQVRLT-LASP-IKSGLNIAVNAGV 343

Query: 272 AL 273
            L
Sbjct: 344 LL 345


>gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
 gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
          Length = 296

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   + ++ T      Y+P       +++ G+L H+P
Sbjct: 133 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 188

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  +   G + +       + L+ E+    +    A + G E  GL  +T
Sbjct: 189 VAVGVPVGQAVTGLRDAGVRLLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEET 248

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    ++  + + G  ++LN++ AAAV LY
Sbjct: 249 RALTDAVVRVPIHGKAESLNLATAAAVCLY 278


>gi|327404354|ref|YP_004345192.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327319862|gb|AEA44354.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 242

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 21/146 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI- 192
           +VLD V DP N+G +LR A  F    +I +K      ++ + +S+ GA+  IP  Y+ + 
Sbjct: 105 LVLDGVQDPGNMGTMLRLADWFGVKQVICSKDTVDCYNSKVIQSSMGAIYRIPVHYLDLA 164

Query: 193 SNLTDALQK-----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           S L D  Q+     +H   ++ +    DS              LI+G EGKG+RP+ +  
Sbjct: 165 SYLKDNQQQKFGAMLHGTNYKKVSYPKDS-------------ILIMGNEGKGVRPEIEAL 211

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
                 +   G  ++LNV+ A A+ L
Sbjct: 212 FDVPVTIPRYGEAESLNVATATAILL 237


>gi|262091708|gb|ACY25298.1| rRNA methylase [uncultured actinobacterium]
          Length = 218

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 13/157 (8%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           S  L AV+ +  +++ D ++DP N+G ILRSA A     ++ T     + +  + ++++G
Sbjct: 60  SSGLAAVKGAHWVVIADRISDPGNLGTILRSAEAAGVSAVVLTPGTVEAFNPKVVRASAG 119

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKG 239
           A+ H+P I       +++++   GF+  G SS  ++        D   KIAL++G E  G
Sbjct: 120 AMFHVPIIE----DVSVEEIRDNGFKVFGTSSHEQQGSIDFTTADLTGKIALLVGNEAHG 175

Query: 240 LRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274
           L     +  +  A L +P  G  ++LNV+ A  +  +
Sbjct: 176 L----DDNVSVDAWLTIPHRGRSESLNVAMACTLVCF 208


>gi|262202744|ref|YP_003273952.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262086091|gb|ACY22059.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 269

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 121 LLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           LL  +LD V  +  +LL V     +P N G ++R A A   D ++         +    +
Sbjct: 99  LLDDSLDRVLAAAPRLLAVGVEPREPGNAGTLIRCADAMGADAVVLLGDAVDPHNGKCVR 158

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL------- 231
           S++G++ H+P +R  +++DAL  + + G   +  ++D +  L+ +I +D   L       
Sbjct: 159 SSAGSIFHLPIVRERSVSDALSAIAAAGVCVLATAADGELILD-DISDDADGLLTRPTAW 217

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + G E  GL    Q  A     + + G  ++LNV+  AA+ LY
Sbjct: 218 LFGNEAHGLPVDVQAMADHRVAVPIRGRAESLNVAATAAICLY 260


>gi|238927108|ref|ZP_04658868.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
           43531]
 gi|238885088|gb|EEQ48726.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
           43531]
          Length = 276

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 10/154 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+G ILR+A A    G+I  +  +    + + ++A G+L ++P++   
Sbjct: 125 LYLALDRVQDPGNVGTILRTADAAGASGVILLRGCADVYGSKVVRAAMGSLFYLPFVTGV 184

Query: 194 NLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           +  D ++  K +   F      +D       E+    + ++LG E  G+  +        
Sbjct: 185 DEEDLVRFAKENVLCFYAAACDTDGVTHFAAELSRPSL-VVLGNEANGVSERLLRAGQ-- 241

Query: 252 AHLHMP--GIIKALNVSNAAAVALY--ITQNHFA 281
            HL++P  G  ++LNV+ AA   LY  I Q  +A
Sbjct: 242 -HLYVPMCGRAESLNVAAAATAILYEAIRQRKYA 274


>gi|330447150|ref|ZP_08310800.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491341|dbj|GAA05297.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A    G+       P E   VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GVHKVHAVWPKEGMRVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ +A+Q +   G Q +  + SD+     +       A+ILG E  G+  +  
Sbjct: 71  VELDTHDSMVEAVQALKDQGMQVLATNLSDTAIDFREVDYTKPTAIILGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 SMADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164


>gi|255324981|ref|ZP_05366088.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297970|gb|EET77280.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 268

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 18/202 (8%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIG 148
           P+  V  +T+ ++ G + +H+GL  A + AP   P +  +   ++ + VL+ V D  NIG
Sbjct: 69  PIYEVSRETLAEVAGFD-MHRGLVAAADRAP--EPEVSEILETAKTIAVLEGVGDHENIG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-------LQK 201
           AI R A     D ++     S +   +  +S   ++ H+  +  ++L          LQ 
Sbjct: 126 AIFRHAAGMGVDAVLLG---SGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQA 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +    F  I L+ + +     E  +  DK+A+++GAEG GL     +     A + M   
Sbjct: 183 LADASFTLISLTPNPQAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPG 242

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LNV+ AAA++ Y  Q   +
Sbjct: 243 TDSLNVATAAAISFYERQRSLS 264


>gi|257463319|ref|ZP_05627716.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060896|ref|ZP_07925381.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313686572|gb|EFS23407.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 224

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 93/189 (49%), Gaps = 8/189 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV  +  +  +K+  +E   QG+ L  +    P ++  + ++ L+VLD + DP N+G ++
Sbjct: 36  PVFLLSRKCFEKVSVQEN-SQGVILLYS---YPVIEISKAAKQLIVLDDIQDPGNLGTMI 91

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI- 210
           R   A     I  TK      +  + +S+ G++ H+  + +    + L+ + +  +  + 
Sbjct: 92  RLVDAAGFSDIFLTKHSVDCYNEKVVRSSMGSIFHVR-LHVMEKKEILEYLQTENYHVLV 150

Query: 211 -GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             L  DS    E ++K +K A + G EG G+  +  E A     + + G  ++LNV+ AA
Sbjct: 151 TTLQRDSVAYTEMQLK-EKNAFVFGNEGHGVSKEFLELAEQKIIIPISGQAESLNVAMAA 209

Query: 270 AVALYITQN 278
            + L+ +++
Sbjct: 210 GIILFYSRD 218


>gi|225181655|ref|ZP_03735095.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
           1]
 gi|225167636|gb|EEG76447.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
           1]
          Length = 264

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 1/183 (0%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV ++  +  D+    ++    LA+   P    T   V+   LL+V D V DP N+G +L
Sbjct: 73  PVLSIAEKLFDRTAFTDSPQGILAVAPRPKSDLTDLFVKKPALLLVADGVQDPGNLGTML 132

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   DG I       + +    ++A GA   +  +  +N  D L  +   G   + 
Sbjct: 133 RSAAAAGADGAILLPGTVDATNPKALRAAMGAYFALSVVE-TNHQDCLSALAGHGVSLVT 191

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            ++ ++   ++   N  +A+++G EG G+ P   E A S   + M G +++LN + A +V
Sbjct: 192 TAARAEVAYDRYDWNTPVAVVIGNEGSGVSPAMAEAAKSRVSIPMAGAVESLNAAIAMSV 251

Query: 272 ALY 274
             +
Sbjct: 252 IFF 254


>gi|323464763|gb|ADX76916.1| RNA methyltransferase, TrmH family [Staphylococcus pseudintermedius
           ED99]
          Length = 248

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 21/181 (11%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           TV PQ I  I+ K                P +D     Q+L +LD + DP N+G ++R+A
Sbjct: 84  TVTPQGIFAIIEK----------------PQVDVTAAKQVL-ILDRIQDPGNLGTMIRTA 126

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS- 213
            A   D I+ TK  +      + +++ G++ HIP   I  + D    M S+     G + 
Sbjct: 127 DAAGLDLIVMTKGTADVYQDKVLRASQGSVFHIP---IQYVDDMSAWMSSFKGPIYGTAL 183

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D+    +   + D  ALILG EG+G+        T    + + G  ++LNV+ AA V +
Sbjct: 184 QDATTYHQVASQQDTFALILGNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGVLM 243

Query: 274 Y 274
           +
Sbjct: 244 F 244


>gi|319898055|ref|YP_004136252.1| methyltransferase [Haemophilus influenzae F3031]
 gi|317433561|emb|CBY81945.1| predicted methyltransferase [Haemophilus influenzae F3031]
          Length = 351

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 19/202 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96
           ++ E + +YG +   A     +  I +L AT          L+ L  +    H      V
Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167

Query: 97  PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             + + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +LR
Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +   F    I+     +    A + + A G  E+I  +   ++  AL  +   G+Q I +
Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIHV 285

Query: 213 SSDSK-KPLEQEIKNDKIALIL 233
           S + +  PL++    +K+  +L
Sbjct: 286 SHNKQGNPLDKVRLKNKVVFVL 307


>gi|258573751|ref|XP_002541057.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901323|gb|EEP75724.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 582

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 30/168 (17%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD + DP N+GAI+RSA  F  D I  + R S   SAV  K+++GA E++P I I 
Sbjct: 376 FILLLDGILDPGNLGAIIRSAYFFGADAIAFSSRNSAPLSAVTIKASAGAAENMPLISIH 435

Query: 194 NLTDALQKMHSWGFQTIGLS------SDS---------KKP------LEQEIKNDKIALI 232
           +    +      G++            DS         K P      L  E +     L+
Sbjct: 436 DPATFIDTSRGNGWRFFAAEPPASTFDDSQAQVDTMLTKTPILSPHNLSAEPRKSPCVLM 495

Query: 233 LGAEGKGLRPKTQETATSMAHL---------HMPGIIKALNVSNAAAV 271
           LG+EG GL    +  A +   +           P  + +LNVS A+A+
Sbjct: 496 LGSEGYGLSKYLKRKADAFVAIPGAQAAGLSDDPAGVDSLNVSVASAL 543


>gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
 gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
          Length = 234

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A    G+       P E+  VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GVHKVHAVWPKENMRVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N+ DA+  + + G Q +  + SD+             A+I G E  G+  +  
Sbjct: 71  VELDTHDNMVDAITHLKAQGMQVLATNLSDTAIDFRDVDYTKPTAIIFGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A     + M G++++LNVS A+A+ LY  Q
Sbjct: 131 AMADQDIIIPMVGMVQSLNVSVASALILYEAQ 162


>gi|218888224|ref|YP_002437545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759178|gb|ACL10077.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 187

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 4/141 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEHIP 188
           R   L +VL +++DPHN+ AI RS  AF    +     Y+ +   VL  KS++ A + + 
Sbjct: 11  RQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLY--YTDTAFPVLGRKSSASARKWVD 68

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R S+    ++ +   G + +  S + + KPL         A+I+G E  G+ P+  E 
Sbjct: 69  TVRHSDAQSLMRTLKEGGHRVLATSCTPAAKPLGDYDMTQPTAIIMGNEHSGVAPELVEL 128

Query: 248 ATSMAHLHMPGIIKALNVSNA 268
                ++ M G+I++ NVS A
Sbjct: 129 VDGEVYIPMYGMIQSFNVSVA 149


>gi|309389091|gb|ADO76971.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium praevalens DSM
           2228]
          Length = 269

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 124/291 (42%), Gaps = 50/291 (17%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+IS  +++KI      +  KL R              SR+  +     L G   + AA
Sbjct: 1   MNIISSSQNDKI-----KYLNKLYR--------------SRNRRKEGVFILEGKRLIEAA 41

Query: 61  LNNPSR--------KIFQLLATKNALARLDWDANLPH------PFPVKTVPPQTIDKIVG 106
           L   +           F+  A +  LA L  +A+L +           TV PQ I  +V 
Sbjct: 42  LAGGADFKQVFLTPAFFKSAANEKLLAALKLEADLIYLEEKLLKETASTVNPQGILAVV- 100

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +E+V +G             D    +  +++LD + DP N+G I+R+AVA   DGII  K
Sbjct: 101 EESVFKGQ------------DFYNKADKILLLDRIQDPGNMGTIIRTAVAAGFDGIIALK 148

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQE 223
                 +  + +S  G +  I   +  +  + L ++         L++D +      E +
Sbjct: 149 GSVDIYNQKVIRSTMGGIFSIAIRQKLSQQEFLVELKEKALDHELLAADIEAEEYHFEHQ 208

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ K+ L++G E  GL P+    A +   + + G I++LN + AA+V  +
Sbjct: 209 YQS-KLILMIGNEANGLDPQLLTKAKTKIKIPLAGEIESLNAAVAASVIAF 258


>gi|302762835|ref|XP_002964839.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
 gi|300167072|gb|EFJ33677.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
          Length = 321

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 19/163 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASG------A 183
           N   L++LD + DP N+G +LR+A AF+ DG+ +      P     L  S +       A
Sbjct: 160 NPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTLRASRAANFRMPIA 219

Query: 184 LEHIPYIRISNLTDAL-------QKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGA 235
               P I+     +A+       +++HS    +     +S + L ++IK++K + L+LG+
Sbjct: 220 AGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHS---KKNSPEALIEKIKSEKSLCLVLGS 276

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           EG+GL    +  +  +  + MPG  ++LNV+    + +++  N
Sbjct: 277 EGQGLSDPARRGSQHLT-VPMPGKFESLNVAVVGGILMFLLMN 318


>gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 264

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 100/196 (51%), Gaps = 15/196 (7%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           L    P+  V P+ + K + +   HQ + A+   P  + +LD  + ++ L++LD V DP 
Sbjct: 70  LKADLPLTQVTPE-VAKALSQTDHHQDIFAVANIPQ-AKSLDIDQLTKGLLILDQVQDPG 127

Query: 146 NIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           N+G ++R+A AF       G+ T   Y+      + +S  G+   +    + +L + + +
Sbjct: 128 NLGTLIRTADAFGYRDVLLGLGTVDLYNDK----VLRSMQGSHFAVNTYEV-DLVEVIPQ 182

Query: 202 MHSWGF--QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +   G+   T  L++ +K     ++K+  K AL++G EG G+   T + A +  ++ M G
Sbjct: 183 LQEAGYFITTTELNNQAKASNAFDLKSKGKWALVMGNEGNGVSQTTSQLADAALYIPMSG 242

Query: 259 IIKALNVSNAAAVALY 274
             ++LNV+ A A+ +Y
Sbjct: 243 SAESLNVAVAGAIVMY 258


>gi|52424303|ref|YP_087440.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306355|gb|AAU36855.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 369

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L+  LD  R    L++LD+V +P NIG I+R+   +   G+I       + +A + + A 
Sbjct: 215 LTGYLDIPRQQDALIILDNVRNPQNIGGIIRTCAFYGVKGVIVDNAELLNSAAAM-RVAE 273

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G +E+I  ++  +  DAL K+   G+Q +  +++ +     +++  K  + +  E +   
Sbjct: 274 GGMEYIHQLQTESPDDALAKLRKAGYQVVHTTTNKQAKGVHKLQLAKKVVFVLTESEN-- 331

Query: 242 PKTQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273
           P   ++   + +L     +K  LNV+ AA V L
Sbjct: 332 PALVQSGDEVINLSFANPLKTGLNVAVAAGVLL 364


>gi|315023474|gb|EFT36480.1| rRNA methylase [Riemerella anatipestifer RA-YM]
          Length = 264

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           VP + +++   K   HQG+    + +   +++AV         +  L++LD + D  N G
Sbjct: 72  VPIEKLNRFTRKN--HQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTDVRNFG 129

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A     D II  ++ +   ++   K+++GAL ++   +  NL   +  +   G  
Sbjct: 130 AICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQQSGVS 189

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
               +  ++K +         AL++G E KG+  +    +     L + G  ++LNVS A
Sbjct: 190 VFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVA 249

Query: 269 AAVALY 274
               LY
Sbjct: 250 CGAILY 255


>gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 261

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 106/253 (41%), Gaps = 28/253 (11%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP----PQ 99
           +Q   +F  GVH V  +L +      ++  T+  + +     N       K +P     +
Sbjct: 21  TQRRKIFFEGVHLVETSLVSDYVFTEKVFVTEKFIEK---QKNFLEILQEKKIPVIIISE 77

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + K +      QG+    A      ++ + N   +++ D + DP NIG I+R+A AF  
Sbjct: 78  KVAKTISDTVTPQGV-FAIADFKIKNINDLSNPTFIVIADRIQDPGNIGTIIRAAEAFGA 136

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--------- 210
           + ++ T       S    ++++G++  +P I+++ + +  + +  +G   +         
Sbjct: 137 EAVLVTHGTCNPFSNKALRASAGSIFFLPVIKVT-VKEIEEFVSKYGLNLVITDLKATIS 195

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             + D  KPL         A++ G E KG+    +    +   +   G  ++LNV+ AA 
Sbjct: 196 SFNMDFTKPL---------AIVFGNESKGVSQDLRAIKHTSCKIPHKGKAESLNVAMAAT 246

Query: 271 VALY-ITQNHFAK 282
             LY I +  F K
Sbjct: 247 AILYEILRQRFLK 259


>gi|229844416|ref|ZP_04464556.1| rRNA methylase [Haemophilus influenzae 6P18H1]
 gi|229812665|gb|EEP48354.1| rRNA methylase [Haemophilus influenzae 6P18H1]
          Length = 351

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 19/202 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96
           ++ E + +YG +   A     +  I +L AT          L+ L  +    H      V
Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167

Query: 97  PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             + + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +LR
Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +   F    I+         SA   + A G  E+I  +    +  AL ++   G+Q I +
Sbjct: 227 TCAYFGVKNIVADN-VENLYSAASMRVAEGGAEYIRVLETDYIDSALMQLRKSGYQVIHV 285

Query: 213 SSDSK-KPLEQEIKNDKIALIL 233
           S + +  PL++    +K+  +L
Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307


>gi|37520123|ref|NP_923500.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35211115|dbj|BAC88495.1| gll0554 [Gloeobacter violaceus PCC 7421]
          Length = 265

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188
           R+  LL++ + + DP N+G ++RS  A   DG++ +     P    VL ++++G     P
Sbjct: 110 RDVSLLVLGERLQDPGNVGTLVRSCAAVGADGLVLSADSVDPDHPKVL-RASAGLWFRSP 168

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            + + +LT  +  +   G Q +   + + + L +       A +LG+EG+GL    +   
Sbjct: 169 PLSVPDLTACVADLVRRGVQVLAADAGAGRSLWECDLRRPTAFVLGSEGQGLSEPLRRCL 228

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + +   +++LNV+ + A+ L+
Sbjct: 229 PERVGIPLAPGVESLNVAVSGALLLF 254


>gi|325335303|gb|ADZ11577.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 258

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           VP + +++   K   HQG+    + +   +++AV         +  L++LD + D  N G
Sbjct: 66  VPIEKLNRFTRKN--HQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTDVRNFG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A     D II  ++ +   ++   K+++GAL ++   +  NL   +  +   G  
Sbjct: 124 AICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQQSGVS 183

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
               +  ++K +         AL++G E KG+  +    +     L + G  ++LNVS A
Sbjct: 184 VFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVA 243

Query: 269 AAVALY 274
               LY
Sbjct: 244 CGAILY 249


>gi|86609412|ref|YP_478174.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557954|gb|ABD02911.1| RNA methyltransferase, TrmH family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 270

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSAS 181
           SP L  +R   L +V++ + DP N+G+++R   A   DG+ ++     P    VL  SA 
Sbjct: 107 SPPLSKLR---LGLVVETLQDPGNLGSLIRVVAAAGADGLWLSADSVDPENPKVLRASAG 163

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKG 239
                 P + + +L   +Q     G Q +   LS  +    +Q++    +  +LG EG G
Sbjct: 164 QWFRRPPQV-VPDLAAWIQSCRCHGIQVLAATLSPTANCYWDQDLTRPTL-FLLGNEGAG 221

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           LR  T + A +   + M   +++LNV+    + LY
Sbjct: 222 LREATIQQADAQVRIPMAEGVESLNVAMTGGLLLY 256


>gi|297624394|ref|YP_003705828.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297165574|gb|ADI15285.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 276

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V+D +  P N+GA+LR+A       +  T   +  E+  + +S+ G++  +P +R +
Sbjct: 126 LVLVVDGLEKPGNLGALLRTADGVGAAAVFATGAGTDFENPNVIRSSMGSVFSLPTLR-A 184

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              + L  + + GF+ +  +  +           + AL+LG E  GL     E A     
Sbjct: 185 PAAELLAWLRAQGFRLVAATPHADTLFWDAPYTGRTALLLGTEHDGLSALWLEAADVRVT 244

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G+  +LNV+ A A+ LY
Sbjct: 245 IPMGGLADSLNVATAGALLLY 265


>gi|257094430|ref|YP_003168071.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046954|gb|ACV36142.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 272

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 6/157 (3%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL  P  D   ++   +VLD V DP N+G+ILRSA A     I+ +   + + +    ++
Sbjct: 106 PLQGPAPDMQADT---VVLDGVQDPGNVGSILRSAAAAGFRQILLSPDCAQAWAPKTLRA 162

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A GA   +  +   +L   L         T+  +S S   L        +A + G+EG G
Sbjct: 163 AMGAHFQLDVLEHCDLPAFLSAYRGQPVATLLGASTS---LYGADLAGPVAWVFGSEGLG 219

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +RP           + MPG  ++LNV+ AAAV L+ T
Sbjct: 220 VRPAVAALTRLQVRIPMPGPSESLNVAAAAAVCLFET 256


>gi|302914804|ref|XP_003051213.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI
           77-13-4]
 gi|256732151|gb|EEU45500.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI
           77-13-4]
          Length = 710

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 112/292 (38%), Gaps = 74/292 (25%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------PHPFPVKTVPPQT--- 100
           FLYG   V AAL    RK++ L        R + D             P+  VP +    
Sbjct: 312 FLYGRSVVKAALEQGRRKLYNLYIYGGENRRDNKDNTFLSRLAEKQGVPITIVPTEEQRL 371

Query: 101 IDKI-VGKEAVHQGLALETAPLLSPTL----------------------------DAVRN 131
           +DK+ +G+   H G  LE +PL  P L                            +A+  
Sbjct: 372 MDKMSMGR--PHNGFVLEASPL--PQLPIRSLGKLEETPARLGFHVALDFQTKEEEAING 427

Query: 132 SQ-------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           ++              +++L+ + DP N+G I+R+A     D +  T R S + + V  K
Sbjct: 428 TESFFRRANDVMPKPFVLLLNEIMDPGNLGGIIRTASYLGIDAVGITSRGSSTLTPVALK 487

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-----EQEIKNDKIA--- 230
           SA+GA+E I    + +    ++     G++T    +   + L     ++ I  D I    
Sbjct: 488 SAAGAVEEISLFTVDDPLRFIEDSRKAGWKTFAAVAPPDRKLVRKHGDKFISTDVIEANS 547

Query: 231 --------LILGAEGKGLRPKTQETAT---SMAHLHMPGIIKALNVSNAAAV 271
                   L+LG EG GL    +  A    S+        I +LNVS AA +
Sbjct: 548 PLNEHPCLLVLGNEGHGLSKPLKVAADYELSVPRFVQGSCIDSLNVSVAAGL 599


>gi|227541536|ref|ZP_03971585.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182692|gb|EEI63664.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 436

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V    N+P N G ++R A A   D ++        +S   A+S++G+L HIP  R 
Sbjct: 213 KLVSVPVETNEPGNAGTLIRVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARE 272

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATS 250
            N+   +  +   G      ++D +  L   +++ +   A + G E  GL  + Q  A  
Sbjct: 273 RNIMKVVSMLRERGLAIAATAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEELQAQADY 332

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              + + G  ++LN++ AA++ L+ +  + AK
Sbjct: 333 RVRIPIRGRAESLNLATAASICLFESSKYQAK 364


>gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 309

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL +V DP N G +LR A A   + ++ T      Y+P       +++ G+L H+P
Sbjct: 145 KLVAVLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 200

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 + +A++ +   G + +         L+ E+    +    A + G E  GL  +T
Sbjct: 201 VAVGVPVEEAVEGLRRAGVRILAADGAGTDDLDAELDKGTMGGPTAWVFGNEAWGLPEET 260

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A ++  + + G  ++LN++ AAAV LY
Sbjct: 261 RALADAVVRVPIHGKAESLNLATAAAVCLY 290


>gi|118138229|pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The
           Trmh Family From Porphyromonas Gingivalis
          Length = 257

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGALEHIPY 189
           L ++LD V DP N+G ILR+A  F       G  +   +SP     + +++ GAL  +  
Sbjct: 104 LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPK----VVQASXGALARVQP 159

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK---- 243
             + N  D L      G    G   D +   E  + N  +   L+LG+EG+G+ P+    
Sbjct: 160 TPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAE 219

Query: 244 -TQETATSMAHLHMPGIIKALNVSNAAAV 271
            T       + L + G  ++LNV+ A A+
Sbjct: 220 ITDRLTIPASGLSVKGHTESLNVAIATAI 248


>gi|163785954|ref|ZP_02180402.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159877814|gb|EDP71870.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 265

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V +    P NIGAILR+A A S D +I     S   +  + +S+ G +     I ++
Sbjct: 117 LILVAEAPEKPGNIGAILRTADAASVDAVIIANPKSDLYNPNIIRSSVGCV-FTTEIAMA 175

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  DA+  +  + F          +P   +      A+++G E  GL    ++ AT    
Sbjct: 176 SSNDAILYLQKYNFNLFSAILQESEPYHTQDYTLPTAIVVGTEATGLTQAWRDAATQNIS 235

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G+I ++NVS AA + ++
Sbjct: 236 IPMHGVIDSMNVSVAAGILIF 256


>gi|16272372|ref|NP_438585.1| rRNA methylase [Haemophilus influenzae Rd KW20]
 gi|260580513|ref|ZP_05848341.1| rRNA methylase [Haemophilus influenzae RdAW]
 gi|1175994|sp|P44703|Y424_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0424
 gi|1573396|gb|AAC22080.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
 gi|260092855|gb|EEW76790.1| rRNA methylase [Haemophilus influenzae RdAW]
          Length = 351

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)

Query: 96  VPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           V  + + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +L
Sbjct: 167 VDSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVL 225

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+   F    I+         SA   + A G  E+I  +    +  AL ++   G+Q I 
Sbjct: 226 RTCAYFGVKNIVADN-VENLYSAASMRVAEGGAEYIRVLEADYIDSALMQLRKSGYQIIH 284

Query: 212 LSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETAT---SMAHLHMPGIIKA-LNVS 266
           +S + +  PL++    +K+  +L          T+  AT   + A L +   IK+ LN++
Sbjct: 285 VSHNKQGDPLDKVRLKNKVVFVLSESS------TESLATPEDTQARLTLASPIKSGLNIA 338

Query: 267 NAAAVAL 273
             A V L
Sbjct: 339 VNAGVLL 345


>gi|27364301|ref|NP_759829.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus CMCP6]
 gi|27360419|gb|AAO09356.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           CMCP6]
          Length = 228

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R + L + L+ V+ P+N+ A++R+A A    G+       P+E    L  +++GA   + 
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAMIRTADAT---GLHKVHAVWPTEQMKTLKNTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++ DA+  + + G Q +  + SDS     Q       A+ILG+E  G+  + +  
Sbjct: 73  VDTHDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A AV LY  Q  
Sbjct: 133 ADQDIMIPMVGMVQSLNVSVACAVILYEAQRQ 164


>gi|149199824|ref|ZP_01876854.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149137112|gb|EDM25535.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 168

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +A    ++++VLD +   HN+G I R A A + + + T    +      L K+A G  E 
Sbjct: 12  EASEKVEVIVVLDRLRSAHNVGNIFRLADAANVEAVYTCGYTASPPHPKLEKTAMGTDEF 71

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      +  +A+  +   G++   + + DS   + +   + K A + G E  G++ +T 
Sbjct: 72  VNCEHFDHSLEAVGSLKKNGYRVYAVDTIDSAIDVHEAQFSGKCAFVFGNEALGIQQETL 131

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E       L+  G   ++NVSN AAV L+
Sbjct: 132 EACDEYIRLNAHGRKNSINVSNCAAVVLF 160


>gi|42523228|ref|NP_968608.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575433|emb|CAE79601.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
          Length = 258

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 3/141 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-LAKSASGALEHIPYIRI 192
           L+ VLD++    N+G+I R+A     + I     Y+P  +   + K+A G  E++ +   
Sbjct: 108 LVFVLDNIRSAFNVGSIFRTAECLGAEKIYLCG-YTPLPTQWKVEKTAMGTQEYLAWEEA 166

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             L + L+++   G++ + L ++ S   L ++ +++  A +LG E  GL P+  +    +
Sbjct: 167 PKLLECLEELKDEGYRIVALETAASASDLFEKFESEPTAFVLGNERFGLDPEVLKIIDEV 226

Query: 252 AHLHMPGIIKALNVSNAAAVA 272
             + + G   +LNV   AAVA
Sbjct: 227 RIIPLRGRKNSLNVGVTAAVA 247


>gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa]
 gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa]
          Length = 359

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 12/153 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP----- 188
           ++VL+ + DP N+G +LRSA+A    G+ +      P  S VL +++ GA   IP     
Sbjct: 202 ILVLEGIQDPGNLGTLLRSALALGWGGVFLLPGCCDPFNSKVL-RASRGASFQIPIVSGS 260

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKT 244
           +  +  L D  Q     G       S     L Q + +      + L+LG+EG GL  K 
Sbjct: 261 WYHLEALKDEYQMKMLAGHPDCNDKSRPVSQLSQGLADCFARVPLCLVLGSEGHGLSEKA 320

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           Q     ++ + M G  ++LNV+ A  + LY+ Q
Sbjct: 321 QRECELLS-IPMAGEFESLNVAVAGGIFLYMLQ 352


>gi|239501022|ref|ZP_04660332.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
          Length = 258

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 15/228 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106
           L G H   A L    +K+F L  T+ AL   D     + +  H F +  V  + +  +  
Sbjct: 35  LEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDLKKIIELHQGHVFIISEVLYKDLSTLGN 93

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
             +    LA+   P  + T+D   ++   ++L++V DP N+G +LRSA A +   II T+
Sbjct: 94  TLSC---LAIIDLPKTASTIDYSVDT---LILENVQDPGNVGTLLRSAAAANIKQIICTQ 147

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   S  + ++  GA   +       LTD L K     F T   SS     L  +  +
Sbjct: 148 GSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSKDLS 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ILG EG+G      E A S+  +  PG  ++LNV+ A ++  +
Sbjct: 205 KPCVWILGNEGQGASDYALEHAQSVT-IPQPGGQESLNVAIAGSICFF 251


>gi|116514430|ref|YP_813336.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093745|gb|ABJ58898.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 254

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 117/268 (43%), Gaps = 56/268 (20%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q+ ++  +     + G H V  AL   S K  ++LAT+ AL+RL   A L   +      
Sbjct: 19  QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---AQLGLAY------ 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------------------MVL 138
                         +G  ++ +  ++  L + +NSQ +                   ++L
Sbjct: 69  -------------DEGKLIKISQSVASHLSSTKNSQDIFMTVKINRPKHFAFSYGKWVLL 115

Query: 139 DHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           D + DP N+G I+R+A A   DG+I    T   Y+P     + +S  G+  H+  I+ ++
Sbjct: 116 DDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK-AD 170

Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L DA+  + +        L   + K L       ++ALI+G E  G+ P+ +  A    +
Sbjct: 171 LPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLY 230

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + + G  ++LN + AA + +Y    HF+
Sbjct: 231 IPIKGRAESLNAAVAAGIMIY----HFS 254


>gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
 gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
          Length = 241

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 3/146 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++LD V+  +NI A+LRSA A     +     +  S   V   +ASG+ + +  
Sbjct: 16  RQPDLTVLLDQVHKTNNIAAVLRSADAVGVHQLHAV--WPESAMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
           +R   +TDA+  + + G Q +  +        +EI   K  A++LG E  G+  +    A
Sbjct: 74  LRHQTVTDAITALKADGMQVVVTNFSPNAKDFREIDYTKPTAIVLGHEKNGVSDEAVRLA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            +   + M G++++LNVS A A+ L+
Sbjct: 134 DAEVIIPMVGMVQSLNVSVAGALVLF 159


>gi|167837026|ref|ZP_02463909.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis MSMB43]
          Length = 262

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 115/258 (44%), Gaps = 21/258 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK+++S    +    +     L G+H  SA L+   +    ++ T  ALA  +  
Sbjct: 7   RDNPLYKRLKSLAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVV-TDGALAHAEAR 65

Query: 85  ANLP--HPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLL-----SPTLDAVRNSQLLM 136
             +    P  V T+P    D + G+ + V  G+ L    LL     +P L A R +   +
Sbjct: 66  EIVARIEPARVVTLP----DALFGQLSNVVNGVGL----LLLVARPAPALPA-RVADTSV 116

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V D  N+G+ILRSA A     +      + + S+ + +SA GA  H   + I    
Sbjct: 117 VLDGVQDAGNVGSILRSAAAAGVKRVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDI 173

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           DA   +           S   + +        +A + G EG G+  + ++ AT    +  
Sbjct: 174 DAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWRDAATHRVTIPQ 233

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNV+ AAAV L+
Sbjct: 234 PGGMESLNVAAAAAVCLF 251


>gi|42519503|ref|NP_965433.1| hypothetical protein LJ1627 [Lactobacillus johnsonii NCC 533]
 gi|41583791|gb|AAS09399.1| hypothetical protein LJ_1627 [Lactobacillus johnsonii NCC 533]
 gi|329667742|gb|AEB93690.1| rRNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 253

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 118/266 (44%), Gaps = 30/266 (11%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL +    ++ +L T  AL +LD   
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKSHENYLY-VLGTAEALKKLDTTY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVG-KEAVHQGLA--------LETAPLLSPTLDAVRNSQLLM 136
            L              +K++   +A+ Q L+            P+  P   +    + + 
Sbjct: 66  KLKD------------NKVIQITDAIAQHLSSTKNSQDIFMVLPINQPKSFSFEYGKWV- 112

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD++ DP N+G I+R+A A   DG++ ++      +  + +S  G+  HI  I+ + + 
Sbjct: 113 VLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQ-NPIL 171

Query: 197 DALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +A+      G    + +   + K L       ++AL++G E  G   +  ETA    ++ 
Sbjct: 172 EAISSFKENGLPVYVSILDKTAKSLNNCAPVPQLALVIGNEAHGASKEVIETADKKIYIP 231

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           + G  ++LN + AA + +Y    HF+
Sbjct: 232 IKGKAESLNAAVAAGIMIY----HFS 253


>gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
 gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
          Length = 276

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 75/156 (48%), Gaps = 1/156 (0%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L   ++  + S  L++    NDP N+G I+R   A     +I         ++   +S++
Sbjct: 117 LEEAIEVGKQSGCLVIPVECNDPGNVGTIVRMTDALGAGAVILAGDSVDPLNSKAVRSSA 176

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGL 240
           G++ H P  R  ++   ++++   GF T+  + D    L  + + +  +A + G E  GL
Sbjct: 177 GSVFHTPVARERDIDVVVERVREAGFTTLATAMDGALTLGVDALPDGPVAWLFGNEAHGL 236

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +   +A +   + + G  ++LN++ AAA+ L+ T
Sbjct: 237 SEEITASAGASVAIPIKGEAESLNLATAAAMCLWET 272


>gi|313680632|ref|YP_004058371.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
           14977]
 gi|313153347|gb|ADR37198.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
           14977]
          Length = 258

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++V   +  P N+GA+LRSA A   D ++        E+  + ++++G +  +P   + +
Sbjct: 111 VLVAVEIEKPGNLGAMLRSADASGADAVLVVGEAVDPENPNVIRASTGTVFTLPLAAVDH 170

Query: 195 LTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
             DA +  +   G Q +  +  +++   +   +   A ++GAE +GL P   E A     
Sbjct: 171 --DAARAWLRERGLQIVAAAPRARRVYWEADLSGPTAFVVGAEDRGLPPGWLEAADLAVR 228

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G+  +LN S +AA+ LY
Sbjct: 229 IPMEGVADSLNASVSAALLLY 249


>gi|260663516|ref|ZP_05864406.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552057|gb|EEX25110.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
          Length = 259

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 118/276 (42%), Gaps = 38/276 (13%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EK+ S+K++         +++KK+Q+  +K R   Q     L G H V+ AL    R + 
Sbjct: 3   EKLTSVKNARV-------KEWKKLQT--RKGR--KQQGRYLLEGWHLVNEALQ-ADRGLH 50

Query: 70  QLLATKNALA-RLDWDANLPHPFPV---------KTVPPQTIDKIVGKEAVHQGLALETA 119
           +L+ TK  LA   D  A     + V         +TV PQ I  +     +HQ       
Sbjct: 51  ELIGTKEELAAHPDIVARFKEVYSVTPAIMAAVTETVTPQGIMVVADLPDLHQ------- 103

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                   A   S   + LD V +P N+G ++R+A A    G++     +   S  + +S
Sbjct: 104 -------VATDLSGAWLFLDRVQNPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRS 156

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGK 238
             G+  H+      +L    + +   G+   G   + + K           AL++G EG+
Sbjct: 157 MQGSQFHLALYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGR 215

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+  +  +  T+  ++ M G  ++LNV+ +A + ++
Sbjct: 216 GMSEELLKQTTANLYIPMRGQAESLNVAVSAGILMF 251


>gi|294673755|ref|YP_003574371.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294473842|gb|ADE83231.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 268

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++V+D V D  NIGAI RSA A   D ++ T+      +    + + G++  +P+  +  
Sbjct: 126 IVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWL-- 183

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSM 251
             D+   + S G+QT  ++ +D    L+  +  + +++A I+G EG GL  +T   A   
Sbjct: 184 --DSYDTLRSLGYQTAAMALTDKSISLDDPVLKQQERLAFIMGTEGDGLPQQTITNADFT 241

Query: 252 AHLHMPGIIKALN 264
             + M   + +LN
Sbjct: 242 VRIPMSHQVDSLN 254


>gi|269115011|ref|YP_003302774.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322636|emb|CAX37371.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 241

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ L+ + DP NIG I R A +F  D +I       +E  +  +S+ GA+  +  I+ ++
Sbjct: 97  IIALNKLQDPGNIGTIFRLAKSFGFDSVIVENIDIYNEKII--RSSQGAMFSLNIIKTND 154

Query: 195 LTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L+  L       F   +  L+ +S K  + + +N KI ++LG EG G+  K  +   S  
Sbjct: 155 LSKELSAFKKDDFLVYSTTLNKNSIKLNDIDFRNKKIVIVLGNEGNGIDEKIID--LSDF 212

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
           ++++P   ++LNV+   A+ +
Sbjct: 213 NVYVPIEFESLNVACCGAIIM 233


>gi|307128744|ref|YP_003880774.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
 gi|306483206|gb|ADM90076.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
          Length = 246

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 3/142 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++LD + D  N G+++R++     D II T     +  ++  K++SG L  +P  + +
Sbjct: 98  LLLILDSITDVRNFGSLVRTSACTGVDAIIITNYNIVNSDSI--KTSSGGLFKVPICKEN 155

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++ + + G Q I ++  +          +  A ILG E KG+         +   
Sbjct: 156 NIIKIIKFLKNSGIQVIAVTEKTNSICYNINYRNPTAFILGNEEKGISKNYLSICNNTVK 215

Query: 254 L-HMPGIIKALNVSNAAAVALY 274
           L  +   + +LNVS A    LY
Sbjct: 216 LPLLKNSLSSLNVSVACGAILY 237


>gi|89889558|ref|ZP_01201069.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium
           BBFL7]
 gi|89517831|gb|EAS20487.1| tRNA/rRNA  methyltransferase, SpoU family [Flavobacteria bacterium
           BBFL7]
          Length = 175

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++D  R S    L++VLD+V   +NIG++ RSA A+  + I      +      + K+A 
Sbjct: 13  SVDRFRESDKTPLIIVLDNVRSLNNIGSVFRSADAYRVEKIYLCGITAQPPHKDIRKTAL 72

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKG 239
           GA E + +    +  D +++++  G  T  +  + DS      +    K+A+++G E KG
Sbjct: 73  GATETVAWEYRDHTIDIIKELNEQGVTTCAIEQAEDSVSLRGFKPSTKKVAVVMGNEVKG 132

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ +  ++  ++  L   G   +LN+S    + +Y
Sbjct: 133 VQQEVVDSCDTVIELEQYGTKHSLNISVCTGIVIY 167


>gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 271

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L+ VL HV DP N G +LR+A A   D ++ T       +    +S +G+L H+P 
Sbjct: 108 RRPRLVAVLAHVRDPGNAGTVLRAADAAGADAVVLTASSVDVHNPKTVRSTAGSLFHLPV 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------------NDKIALILGAEG 237
           +    L DA+  + S G   +  +   +  L+  +             +   A + G E 
Sbjct: 168 VPGPELPDAVGALRSAGLTVLAAAGSGEHDLDDLLDVVGAAPAGVPDLSRPTAWVFGNEA 227

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GLR +    A +   + + G  ++LN++ AA V LY
Sbjct: 228 WGLRDEDLALADATVRVPLRGRAESLNLATAATVCLY 264


>gi|169606800|ref|XP_001796820.1| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
 gi|160707082|gb|EAT86280.2| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
          Length = 283

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 42/186 (22%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ +D V D  N+GAI RSA     D ++T  R +   S +  K+++GA E +P  ++ 
Sbjct: 93  LILYVDGVLDEGNLGAIARSAYFLGVDAVVTPTRQTAPWSHIAVKASAGAAEAVPLFKVG 152

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKIA-------------------- 230
              D L K    G++     +    P+   E+E  + KI                     
Sbjct: 153 EPADFLGKSSRAGWRIYASDAIPPPPVTSGEKEEPSSKIVYSVARSTKRLPSDHCPVAEH 212

Query: 231 ---LILGAEGKGLRPKTQETATSMAHLHMPGI----------IKALNVSNAAAVALY-IT 276
              L++GAEG GLR    ++  ++AH  + GI          + +LNVS AA++  Y + 
Sbjct: 213 PTILMMGAEGTGLR----DSLLNLAHYKV-GIKHGREVDEIGVDSLNVSVAASILSYEML 267

Query: 277 QNHFAK 282
           Q   AK
Sbjct: 268 QKPIAK 273


>gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
 gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
          Length = 229

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186
           R + L ++L+HV  PHN+ AILRS     CD +   + +  S    +     +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILRS-----CDAVGALEAHIVSLQGRTRTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P      +  A+  +   GF+  G  L  ++K   + +      A +LGAE  GL  + 
Sbjct: 73  VPLNDHPTIETAIGSLKDRGFRVYGTHLGVEAKDYRDCDFTG-PTAFVLGAEKWGLTDRA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++       + M G++++LNVS A A  L+
Sbjct: 132 RDLMDEALFIPMRGMVQSLNVSVATATLLF 161


>gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 270

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 5/151 (3%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P  D  +  Q+L++ D + DP N+G ++R+A A   D I+  K  +      + +++ G+
Sbjct: 121 PQYDVSKAQQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPYQDKVMRASQGS 179

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + HIP +      D    M+++     G + ++    ++       AL+LG EG+G+  +
Sbjct: 180 IFHIPVVT----EDLATYMNNFDGPVYGTALENAVSFKEIEAQSTFALLLGNEGEGVNQE 235

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  T    + + G  ++LNV+ A ++ LY
Sbjct: 236 LLQQTTKNLIIPIYGKAESLNVAIAGSILLY 266


>gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 268

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 12/253 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWD-AN 86
           D++ + S +++    S    +   GV  V   L   SR     LL T   L  L  D A 
Sbjct: 14  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLA--SRFSPRALLGTDRRLLELKEDLAG 71

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPH 145
           +  P+    V P  + ++VG   +++G+    + ++ P++   V  ++ + VL+ VND  
Sbjct: 72  VGAPY--YRVSPDVMAQVVGFH-LNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHE 128

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+ +I R+A       +I     +        + + G    +PY R ++    L  +   
Sbjct: 129 NLSSIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKER 188

Query: 206 GFQTIGLS--SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           GF+ + L+   D++   E    + +  +AL++GAEG GL       +     + M     
Sbjct: 189 GFRLLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTD 248

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AAA+A Y
Sbjct: 249 SLNVATAAALAFY 261


>gi|194336785|ref|YP_002018579.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309262|gb|ACF43962.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 212

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 9/157 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAK--SASGALEH 186
           R   L +++D+VN  HN+ AI+RS     CDG+   + ++ S   ++ AK  +A+GA + 
Sbjct: 5   RQPDLTVIMDNVNKAHNLSAIIRS-----CDGVGIDEIHAVSYRKSIYAKQNAAAGASKW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++  A +K+ + G Q  +    +  +           AL++GAE  G+  +  
Sbjct: 60  LTLTLHPDIASAYRKVSACGMQILVATGKEGSRDFRAIDYTVPTALVMGAEWDGISEEAI 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A     + M G++++LNVS A AV L+  Q   A+
Sbjct: 120 KGADHAITVPMFGMVESLNVSVATAVILFEAQRQRAE 156


>gi|145636308|ref|ZP_01791977.1| rRNA methylase [Haemophilus influenzae PittHH]
 gi|145270473|gb|EDK10407.1| rRNA methylase [Haemophilus influenzae PittHH]
          Length = 234

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            V  + + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +
Sbjct: 49  VVDSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGV 107

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+   F    I+     +   +A + + A G  E+I  +   ++  AL  +   G+Q I
Sbjct: 108 LRTCAYFGVKNIVADNVENLYSAASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQII 166

Query: 211 GLSSDSK-KPLEQEIKNDKIALIL 233
            +S + +  PL++    +K+  +L
Sbjct: 167 HVSHNKQGDPLDKVRLKNKVVFVL 190


>gi|167619604|ref|ZP_02388235.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis Bt4]
 gi|257138775|ref|ZP_05587037.1| RNA methyltransferase [Burkholderia thailandensis E264]
          Length = 262

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 21/258 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +     L G+H  SA L+   +    ++ T  AL+  +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVV-TDGALSHAEAR 65

Query: 85  ANLP--HPFPVKTVPPQTIDKIVGKEA-VHQGLAL-----ETAPLLSPTLDAVRNSQLLM 136
             +    P  V T+P    D + G+ + V  G+ L       AP L       R S   +
Sbjct: 66  ETVARIEPARVVTLP----DALFGQLSNVVNGVGLLLLVARPAPALPE-----RVSNTSV 116

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V D  N+G+ILRSA A     +      + + S+ + +SA GA  H   + I    
Sbjct: 117 VLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDV 173

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           DA   +           S   + +        +A + G EG G+  + ++ AT    +  
Sbjct: 174 DAGTLIERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQ 233

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNV+ AAAV L+
Sbjct: 234 PGGMESLNVAAAAAVCLF 251


>gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
 gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
          Length = 176

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   HNIG++ R++ AF  + I      +    A + K+A GA   + +  ++
Sbjct: 26  LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTALGAEFTVDWKYVN 85

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           N  +A+  + + G+    +       +  E+   KN K A+++G E KG++ +  + +  
Sbjct: 86  NTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKNRKYAIVMGNEVKGVQQEVIDHSHG 145

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 146 CIEIPQYGTKHSLNVSVTAGIVIW 169


>gi|158321000|ref|YP_001513507.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
 gi|158141199|gb|ABW19511.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
          Length = 278

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRI 192
             ++LD + DP N+G I+R+A + + D +I TK    P  S  L ++  GA+ H+P I+ 
Sbjct: 122 FFVILDRIQDPGNMGTIIRTAESANADAVIITKGSVDPYNSKTL-RATMGAIFHMPIIQC 180

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +    L  +     + I    D+ K       N  I +I+G E  G+            
Sbjct: 181 DD-DRWLDDLKENEVKLIAADLDTDKTYIDIDYNTSIGIIIGNEANGISEALLSKVDQRV 239

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + + G I++LN S AA++ +Y
Sbjct: 240 IIPILGKIESLNASVAASILIY 261


>gi|313207250|ref|YP_004046427.1| RNA methyltransferase, trmh family, group 3 [Riemerella
           anatipestifer DSM 15868]
 gi|312446566|gb|ADQ82921.1| RNA methyltransferase, TrmH family, group 3 [Riemerella
           anatipestifer DSM 15868]
          Length = 258

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 7/171 (4%)

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    + +   +++AV         +  L++LD + D  N GAI R+A     D II
Sbjct: 79  HQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTDVRNFGAICRTAECVGVDAII 138

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             ++ +   ++   K+++GAL ++   +  NL   +  +   G      +  ++K +   
Sbjct: 139 IPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQQSGVSVFSATEKAEKLIYDV 198

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 AL++G E KG+  +    +     L + G  ++LNVS A    LY
Sbjct: 199 DFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSLNVSVACGAILY 249


>gi|325684149|gb|EGD26344.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 291

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 10/116 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-- 194
           VL+ V +P N+GAI RSA A   DG++ T   S        + + G +  +P+  +    
Sbjct: 141 VLESVVNPTNVGAIFRSAAALGMDGVLITTDSSDPLYRRSGRVSMGTVFQVPWTYLDQKL 200

Query: 195 -LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                +  +   GF+T  +     + D   P+ +E   D++A+ILG+EG GL P+T
Sbjct: 201 WREKGVASLQELGFKTAAMALRDNTVDIDDPVLKE--ADRLAVILGSEGPGLLPQT 254


>gi|147678286|ref|YP_001212501.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
 gi|146274383|dbj|BAF60132.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
          Length = 270

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 17/253 (6%)

Query: 40  SRHTSQPENLFLY-GVHTVSAALNNP--------SRKIFQLLATKNALARLDWDANLPHP 90
           SR   + E  FL  GV  V  ALN+          R+I +   T+   A L+  +     
Sbjct: 17  SRRFREKEGKFLIEGVRFVEEALNSAWPVEMLVYCRRITE---TRRGEALLEKASF--QG 71

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGA 149
            P+  V      ++ G       LA+     +S   L A     LL+++D V DP N+G 
Sbjct: 72  VPLVEVDESLFGELAGTTTPQGALAVVKKGKVSLEDLQAGGEPALLVIVDGVQDPGNLGT 131

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA A    G+I  K  +   +A   ++  GA+ ++P ++     +A+  +   G + 
Sbjct: 132 IVRSAGAAGAGGVILLKGTADIFNAKALRATMGAIFYVPVVQDVTSVEAMTYLKQLGIKA 191

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +       K +         AL+LG+E  G              + MPG  ++LNV+ ++
Sbjct: 192 VAGDPRGDKLIYDCDLTVPCALVLGSEAAGAGEPVLRMVAERVRIPMPGRAESLNVAVSS 251

Query: 270 AVALY--ITQNHF 280
           AV L+  + Q  F
Sbjct: 252 AVLLFEAVRQRCF 264


>gi|46580760|ref|YP_011568.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450180|gb|AAS96828.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234472|gb|ADP87326.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 196

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHI 187
           R   L +VL +++DPHN+ AI RS  AF   G+     Y    +  ++  K+++ A + +
Sbjct: 20  RQKDLTLVLANIHDPHNVSAIYRSCDAF---GVAQVHLYYTDTAFPSLSGKTSASARKWV 76

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +R  +    +  + + G Q +  S S   KP+         A+I+G E  G+  +  +
Sbjct: 77  DTVRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVD 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
                 ++ M G+I++ NVS AAA+ L
Sbjct: 137 VVDGEVYIPMYGMIQSFNVSVAAAILL 163


>gi|319892126|ref|YP_004149001.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161822|gb|ADV05365.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
          Length = 248

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 21/181 (11%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           TV PQ I  I+ K                P +D     Q+L +LD + DP N+G ++R+A
Sbjct: 84  TVTPQGIFAIIEK----------------PQVDVTAAKQVL-ILDRIQDPGNLGTMIRTA 126

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS- 213
            A   D I+ TK  +      + +++ G++ HIP   I  + D    M S+     G + 
Sbjct: 127 DAAGLDLIVMTKGTADVYQDKVLRASQGSVFHIP---IQYVDDMSAWMSSFKGPIYGTAL 183

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D+    +   + D  ALILG EG+G+        T    + + G  ++LNV+ AA + +
Sbjct: 184 QDATTYHQVASQQDTFALILGNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGILM 243

Query: 274 Y 274
           +
Sbjct: 244 F 244


>gi|291557091|emb|CBL34208.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
          Length = 262

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L  + +S+  ++L+++ D  NIG I+RS  AFS DG+I     +   +    +SA G+L 
Sbjct: 108 LSTIDSSRQFIILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLF 167

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +P I   +  +A+  +   GF       SD    L +E    K A+++G EG G+    
Sbjct: 168 RLP-IYCCDTEEAITLLQKGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTV 226

Query: 245 QETATSMAHLHMP-GIIKALNVSNAAAV 271
           ++       L +P    ++LN S AA+V
Sbjct: 227 KKLCDK--SLFIPISSAESLNASVAASV 252


>gi|291530276|emb|CBK95861.1| rRNA methylases [Eubacterium siraeum 70/3]
          Length = 262

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L  + +S+  ++L+++ D  NIG I+RS  AFS DG+I     +   +    +SA G+L 
Sbjct: 108 LSTIDSSRQFIILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLF 167

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +P I   +  +A+  +   GF       SD    L +E    K A+++G EG G+    
Sbjct: 168 RLP-IYCCDTEEAITLLQKGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTV 226

Query: 245 QETATSMAHLHMP-GIIKALNVSNAAAV 271
           ++       L +P    ++LN S AA+V
Sbjct: 227 KKLCDK--SLFIPISSAESLNASVAASV 252


>gi|212550772|ref|YP_002309089.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549010|dbj|BAG83678.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 274

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 11/184 (5%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSA 154
           V      KI  +E  HQG+     P L    D  + N+ L++VL+ +  P N+GAILR+A
Sbjct: 87  VSKAVFQKIACREN-HQGILALAKPKLHLLADLNLSNNPLIIVLESIEKPGNLGAILRTA 145

Query: 155 VAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            A   D  I    +T  Y+P+    + +S+ G L   P I +++  + L  + S   Q  
Sbjct: 146 EAAKIDATIICNPSTDIYNPN----VVRSSIGCLFSNP-IAVASNEETLAYLKSKSVQIF 200

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
                + K           A+++GAE  GL     + A     + M GII +LNVS + A
Sbjct: 201 AAELTAFKQYYNTDFTSASAIVIGAEVNGLTNFWLDNAHQRIKIPMQGIIDSLNVSVSVA 260

Query: 271 VALY 274
           +  +
Sbjct: 261 IITF 264


>gi|317052474|ref|YP_004113590.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316947558|gb|ADU67034.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 248

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G++LRS+VAF    I+  ++ +        ++++GA+ H  +     L D    
Sbjct: 115 QDPENVGSVLRSSVAFGVRDILLLEQCASPFLPKAIRASAGAVFHCRFFAGPRLEDIFHL 174

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            +    Q + LS++  KPL + + +D   L+ G EG G+  + +E + S+    M   ++
Sbjct: 175 PYPG--QIVSLSAEG-KPLAETVFSDPTMLVPGIEGAGIPARWREQSVSIP---MDAGVE 228

Query: 262 ALNVSNAAAVALY 274
           +LN + A ++ LY
Sbjct: 229 SLNAAVATSIVLY 241


>gi|38233380|ref|NP_939147.1| putative methyltransferase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199640|emb|CAE49299.1| Putative methyltransferase [Corynebacterium diphtheriae]
          Length = 298

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 89/195 (45%), Gaps = 13/195 (6%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAI 150
           PV +V  +T+ ++ G + +H+GL      +   ++  A+  ++ +++L+ V D  NIG++
Sbjct: 98  PVFSVDRETLAQVAGFD-MHRGLLASADRVAGMSIAQAIDGARTVVILEGVGDHENIGSM 156

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQKMHSWG 206
            R+A     D ++     +      + + + G +   P+      +      LQ++   G
Sbjct: 157 FRNAAGMGVDAVLFGNGCADPLYRRVVRVSMGHVLRTPFAHFGGKSTTWQRELQELRDAG 216

Query: 207 FQTIGLSSDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           F  + L+ + +     +   D       K+AL++GAEG GL           A + M   
Sbjct: 217 FHIVSLTPNPQADHLADALVDANGAPYAKVALLVGAEGPGLTEHAMRATDQRARIPMASG 276

Query: 260 IKALNVSNAAAVALY 274
             +LN++ +AA+A Y
Sbjct: 277 TDSLNLATSAAIAFY 291


>gi|257451967|ref|ZP_05617266.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|317058516|ref|ZP_07923001.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313684192|gb|EFS21027.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 257

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+++ L++LD + DP N+G I+R   A     II TK      +  + +S+ G++ H+  
Sbjct: 103 RDARQLIILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVNL 162

Query: 190 --IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +    + D L+K   +      L  DS   +E  + +++ A + G EG G+  +  E 
Sbjct: 163 HTMEKIEIVDYLKK-QQYNIVVTSLQEDSIPYMEMSL-DERNAFVFGNEGHGVSKEFLEI 220

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A     + + G  ++LNV+ A  + L+ +++
Sbjct: 221 ADEKVIIPISGQAESLNVAMALGILLFYSRD 251


>gi|189459984|ref|ZP_03008769.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
 gi|189433287|gb|EDV02272.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 6/151 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  R+++ + V+  V D  NIGAI RSA A   D I+ +       +    + + G++  
Sbjct: 143 EVCRDARRVAVIHGVVDTTNIGAIFRSAAALGIDAILLSPDSCDPLNRRAVRVSMGSVFL 202

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKN-DKIALILGAEGKGLRPK 243
           +P+  +     +L++M   GF T  L+ +D   P++  E+K   ++A+++G E  GL  +
Sbjct: 203 VPWTWLPRPVSSLREM---GFCTASLALTDRSVPIDYPELKEIPRLAIVMGTEDDGLPAE 259

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  +  + M   + +LNV+ A+AVA +
Sbjct: 260 VLSESDYVVRIPMWHGVDSLNVAAASAVAFW 290


>gi|319403804|emb|CBI77388.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 271

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 5/153 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P+  VP + +D I G   VH+G+      +  P L   L  +    L+ VL  +++  ++
Sbjct: 78  PIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPSLKKFLQNLPEKALISVLCGISNYESM 136

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A AF+  GII  K           +++SGA   +PY R  ++   +  + +  F
Sbjct: 137 GAIFRNAAAFASTGIILDKTSCDPLYRKSIRASSGAALSVPYTRGDDIESIITALSNANF 196

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +   LS  +   L+        ALI G EG  L
Sbjct: 197 KLYTLSPSATCYLKDAKATKHTALIFGIEGNDL 229


>gi|90416529|ref|ZP_01224460.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
 gi|90331728|gb|EAS46956.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
          Length = 258

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 67/140 (47%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ LD + +P N+G I+RS  A    G++   +     SA++ K+++G +     +R  +
Sbjct: 116 LIALDGITNPQNLGMIIRSITASPAYGLLLPSKGCADISALVIKASAGTVFKGNILRCES 175

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L  AL      GF+   LSS    PL +      I  +LG E +G+  +    +     +
Sbjct: 176 LAKALPAFIEKGFEVCTLSSHQATPLAEFKPQAPIIYVLGNETEGVSKEIAALSKHRVGI 235

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M   +++LNV+  AA+  +
Sbjct: 236 PMANGVESLNVAITAALIAF 255


>gi|300361215|ref|ZP_07057392.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353834|gb|EFJ69705.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 253

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 116/266 (43%), Gaps = 30/266 (11%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL N    ++ +L T  AL +L    
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSAALVKLTAHY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVG-KEAVHQGLA--------LETAPLLSPTLDAVRNSQLLM 136
            L              DK++   +A+ + L+            P+  P   +    + + 
Sbjct: 66  KLKD------------DKVIQITDAIAEHLSSTKNSQDIFMVLPINQPKSFSFEYGKWV- 112

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD++ DP N+G I+R+A A   DG++ ++      +  + +S  G+  HI  ++ + + 
Sbjct: 113 VLDNLTDPGNVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQ-NPIL 171

Query: 197 DALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            A+      G    + +   + K L   I   ++AL++G E  G      ETA    ++ 
Sbjct: 172 AAISSFKENGIPVYVSILDKTAKSLNNCISVPQLALVIGNEAHGASKDVIETADKKIYIP 231

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           + G  ++LN + AA + +Y    HF+
Sbjct: 232 IKGKAESLNAAVAAGIMIY----HFS 253


>gi|315652177|ref|ZP_07905174.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485572|gb|EFU75957.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 260

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
            ++LD + DP N+G ++R+A       II    T   Y+P     + +S  G++  +P+I
Sbjct: 113 FLILDSLQDPGNLGTLVRAAEGAGITCIIMNENTVDIYNPK----VIRSTMGSIFRVPFI 168

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + +L   + K+ S   +    S +     ++      IA ++G E  G+     +    
Sbjct: 169 YVKDLKKVIDKLQSKAVEIFASSLEGATEYDKPDYKKDIAFVIGNEAAGISKDILDIVEK 228

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G +++LN + A ++ +Y
Sbjct: 229 KIKIPMLGEVESLNAAVAGSILMY 252


>gi|217970565|ref|YP_002355799.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
 gi|217507892|gb|ACK54903.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
          Length = 277

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 4/141 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V+D V DP N+G++LR+A A      +  +  + + S    ++  GA + +  +RI  
Sbjct: 121 LIVVDGVQDPGNLGSLLRTAAAAGIRHALLGEGCAQAWSPRALRAGMGA-QFV--VRIEE 177

Query: 195 LTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
             + L ++ S+ G        +   PL +      +A + GAEG+GL P     A     
Sbjct: 178 GCELLARLESYPGLCLATALREDAHPLYELDLRGPVAWLFGAEGQGLSPALLARADGCVI 237

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M   I++LNV+ AAAV L+
Sbjct: 238 IPMTAGIESLNVAAAAAVCLF 258


>gi|94499900|ref|ZP_01306436.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
 gi|94428101|gb|EAT13075.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
          Length = 229

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ D V  PHN+ AI+RS  AF+ + +     Y   ++      A G+ +++  
Sbjct: 16  RQPDLTLITDAVFKPHNLSAIIRSCDAFAVNELNVVWPYDDYQT--FRGRAMGSQQYVNV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
               +++ A+Q     G+Q +      +     +I   K  A+++GAE  G+  K  +  
Sbjct: 74  KTHKDVSQAIQGFKQQGYQIVAAHFCDQAVPHYDIDYTKPTAIVMGAEKNGVSAKAMDLV 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G++++LNVS AAA+ L
Sbjct: 134 DHSIIVPMEGMVQSLNVSVAAALIL 158


>gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 280

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 12/154 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ VL +V DP N GA++R+A A   D ++ T       S  + +S +G+L H+P +  
Sbjct: 120 RLVAVLSNVRDPGNAGAVIRAADAAGADLVVLTTNSVDIHSPKVVRSTAGSLFHLPVVTG 179

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------------NDKIALILGAEGKGL 240
             L   +  + + G QT+         L++ +                 A + G E  GL
Sbjct: 180 VPLDQVVAALSAHGLQTLAADGVGTHDLDELLDVAGSAPEGVPDLAAHSAWVFGNEAWGL 239

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  A ++  + + G+ ++LN++ AA V LY
Sbjct: 240 TEDERGLADAVVRVPIRGLAESLNLATAATVCLY 273


>gi|315927808|gb|EFV07134.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 163

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 8/151 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L+ ++ +  +++L  ++D  NIGAI R+A A     +I        E  +  +++SGA
Sbjct: 10  ANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLAMEGVI--RTSSGA 67

Query: 184 LEHIPYIRISNLTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
              +P I ISN  DAL    ++   GF         K+    +I N K  L+LG+EG GL
Sbjct: 68  ALDLP-IVISN--DALSLINELKQVGFYFYASDGSGKEIHSVKISNGKKVLVLGSEGFGL 124

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             K  +       + M     +LNVS A A+
Sbjct: 125 SSKIVKKCDECVGIAMKNNFDSLNVSAAFAI 155


>gi|325982188|ref|YP_004294590.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
 gi|325531707|gb|ADZ26428.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
          Length = 274

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 16/258 (6%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTV---SAALNNPSRKIFQLLATKNALARL 81
           R+H   K++    + S++  +     L G+H +    + L  P      L+ +++  A  
Sbjct: 7   RDHPLIKRLIKLEESSQYRKRTGLTLLDGIHLIQIHCSILGKPE----NLIVSESYFADT 62

Query: 82  D----WDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLM 136
           D     D    +  P  T+   ++ + +       G LAL + P L       R   L +
Sbjct: 63  DNKHFMDIIFGYKPPKITIVGDSLFRAISPVKTPTGILALISKPALQGNTH-TRKEVLSV 121

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L+ + DP N+G+ILRSA A +   I  +K  + + S    ++A GA   +     SNL 
Sbjct: 122 LLETIQDPGNLGSILRSAAAANASHIYLSKHCADAWSPKTLRAAMGAHFFLHIYENSNLK 181

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
              Q+        I  S  + K L +       A + G EG GL  +  + A     + M
Sbjct: 182 QIAQQFPG---TVIATSIQATKNLFEISLAGPTAFLFGNEGAGLSAEMIQAAHLNIAITM 238

Query: 257 PGIIKALNVSNAAAVALY 274
           PG  ++LNV+ AAA+  +
Sbjct: 239 PGKTESLNVAAAAAICFF 256


>gi|194476573|ref|YP_002048752.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
 gi|171191580|gb|ACB42542.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
          Length = 268

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+VLDH+ DP N+G ++R+A+A   D +   +   P +  VL ++++GA   +P  R  
Sbjct: 111 FLLVLDHLQDPGNLGTLMRTALAAGVDYVWLLEGADPWQPKVL-RASAGATLALPLKRFL 169

Query: 194 NLTDALQKMHSW-GFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                LQ +    G Q +    +        +P  Q        L LG EG GL P  + 
Sbjct: 170 EKKLLLQNLQILKGMQRVATRVNKHEVTPFIQPYWQLNWCKPTILFLGNEGSGLDPGLEA 229

Query: 247 TATSMAHLHMPGIIKALNVSNAAA 270
             T    +    ++++LNV  AAA
Sbjct: 230 VCTDAVTIPHTSLVESLNVGVAAA 253


>gi|157693283|ref|YP_001487745.1| SpoU rRNA methylase family [Bacillus pumilus SAFR-032]
 gi|157682041|gb|ABV63185.1| possible SpoU family rRNA methyltransferase [Bacillus pumilus
           SAFR-032]
          Length = 247

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 18/248 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           + +KK+ +  ++++       LFL  G+H V  AL + + K   + +     + +D D  
Sbjct: 13  KQWKKLHTKKERTK-----TGLFLVEGIHLVEEALKSRAVKELMVTSPDKLPSHIDPDIE 67

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           L        +  +    +   E      A+ T P+        +  + L++LD V DP N
Sbjct: 68  L------YELSEEAFFAMTETETPQHIAAVCTVPVFEE-----KKYERLLLLDAVQDPGN 116

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ++R+A A   D +I       + +    +SA G+  H+P ++ S L   +      G
Sbjct: 117 LGTLIRTADAAGLDAVILGDGTVDAYNGKTLRSAQGSHFHLPILKQS-LQQTIAACKEQG 175

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G + ++ K  +        ALI+G EG G+ P+  +      ++ M G  ++LNV+
Sbjct: 176 IPVYGSALNNAKAYKSVTAEGPFALIVGNEGGGINPEILQMTDHNLYVPMYGQAESLNVA 235

Query: 267 NAAAVALY 274
            AAAV +Y
Sbjct: 236 VAAAVLVY 243


>gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 176

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L++VLD++   +NIG++ R+A AF  + I      +      + K+A GA + + +  
Sbjct: 23  SPLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGATDSVVWEY 82

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA 248
           + N  D +Q +      TI +          + K   ++K ALI G E KG+  +   + 
Sbjct: 83  VENTMDVIQSLKENKVTTIAIEQAENAVFLNDFKVSKDEKYALIFGNEVKGVAQEVVSSC 142

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            ++  +   G   +LN+S +A V ++
Sbjct: 143 DTVVEIPQYGTKHSLNISVSAGVVVW 168


>gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629]
          Length = 263

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 63/140 (45%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VL+ + DP N+G ++R+       GII  +      +    +S  G+L  +P+    +
Sbjct: 113 LLVLESIQDPGNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDD 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + ++   S G          K   ++         ++G EG GL  +  + A +   +
Sbjct: 173 LPETIEYAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + +A + +Y
Sbjct: 233 PMEGAVESLNAAISATLLMY 252


>gi|212705009|ref|ZP_03313137.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
 gi|212671561|gb|EEB32044.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
          Length = 196

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 4/148 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A R   L +VL +++DPHN+ AI RS  AF  D +     Y+ +   VL  K+++ A + 
Sbjct: 18  AHRQPDLTLVLANIHDPHNVSAIYRSCDAFGVDKVHLY--YTDTPFPVLGRKTSASARKW 75

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  +R  +  +    + +   Q +  + + + KPL         A+I+G E  G+  +  
Sbjct: 76  VESVRHRDRQELETSLRAQNMQILATTFTPTAKPLRTWDFTRPTAIIMGNEHSGVNEELI 135

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
             A    ++ M G+I++ NVS A+A+ L
Sbjct: 136 SMADGELYIPMYGMIQSFNVSVASAIIL 163


>gi|194466627|ref|ZP_03072614.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
 gi|194453663|gb|EDX42560.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
          Length = 258

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 38/281 (13%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E++ S+ + H        +D+KK+Q+  +K+R   Q     L G H V  A +    ++ 
Sbjct: 2   EQLTSIHNQHV-------KDWKKLQT--KKARR--QTGTYLLDGWHLVQEA-SKAGIELL 49

Query: 70  QLLATKNALA---RLDWDANLPHPFP-------VKTVPPQTIDKIVGKEAVHQGLALETA 119
           +++ T   LA    L+  AN  +            TV PQ I  +V     H+   L   
Sbjct: 50  EVVGTTEQLAAHPELEGMANATYEVTEEIMKHITDTVTPQGIAAVVALPDSHR---LPAG 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L           LD V DP N+G ++R+A A    G++  +R +      + +S
Sbjct: 107 PLHGAWL----------FLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRS 156

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGK 238
             G+  H+      +L   +    S      G   + + K        D  ALI+G EG+
Sbjct: 157 MQGSQFHLQMFE-GDLRKWIDDFKSTNAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQ 215

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
           G+        T   ++ M G  ++LNV+ +A + ++ + QN
Sbjct: 216 GMSDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQN 256


>gi|68071813|ref|XP_677820.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498081|emb|CAH95522.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 300

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 111/272 (40%), Gaps = 49/272 (18%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK-- 107
           ++YG+++V + L    RKI + +  KN + R        + + + T+  + I ++V K  
Sbjct: 24  YIYGLNSVYSVLKKNERKIDKAIINKN-IKRSKKIHKEAYDYILNTIKERNI-QVVYKTK 81

Query: 108 ----EAV----HQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRSA 154
               E V    H  + +E    +      +      N+ + + L +V D  N+G I RS 
Sbjct: 82  NEMCELVGGFPHNDIIIELYRYMKNYRHFINSKKTTNNNIYICLHNVYDNMNVGNICRSV 141

Query: 155 VAFSCDGIITTKRYSPSESAVLAK-------SASGALEHIPYIRISNLTDALQKMHSWGF 207
           + F  + I   ++    E     K       S+ GA E++ +  ++N+ + +  +   GF
Sbjct: 142 LFFGGESIFLKRKRKKGEHKNYIKINTPILHSSVGASEYLNFFHVNNMENFISSLKEKGF 201

Query: 208 QTIGLSSDSKKPLEQEI---------KNDKIALILGAEGKGLRP---KTQETATSMAHLH 255
             +  SS                   KN+K+ +ILG E KGL     K  +    + +L 
Sbjct: 202 TILSTSSPKNNTQMTNFVELKNVKINKNEKVMIILGNESKGLNEDIIKNSDICIYINNLF 261

Query: 256 -----MPG--------IIKALNVSNAAAVALY 274
                 P         I+ +LNV+N  ++ L+
Sbjct: 262 DEQNIQPNLKNTNDNIIVNSLNVNNVCSIILH 293


>gi|320157693|ref|YP_004190072.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|319933005|gb|ADV87869.1| tRNA (guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 228

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R + L + L+ V+ P+N+ A++R+A A    G+       P+E    L  +++GA   + 
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAMIRTADAT---GLHKVHAVWPTEQMKTLKNTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++ DA+  + + G Q +  + SDS     Q       A+ILG+E  G+  + +  
Sbjct: 73  VDTHDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A AV LY  Q  
Sbjct: 133 ADQDIIIPMVGMVQSLNVSVACAVILYEAQRQ 164


>gi|187928382|ref|YP_001898869.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12J]
 gi|187725272|gb|ACD26437.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12J]
          Length = 260

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 118/264 (44%), Gaps = 33/264 (12%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  +K +++ +  ++H  +     L GVH V A L+     +  L++ ++        
Sbjct: 7   RDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLVSERH-------- 58

Query: 85  ANLPHP---FPVKTVPPQTI----DKIVGK-EAVHQGLAL----ETAPLLSP-TLDAVRN 131
             + HP     +  V P T+    D + G+   V  G+ L    ETA    P T+DA   
Sbjct: 59  --VRHPEVAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETAEGKLPQTIDAD-- 114

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  + 
Sbjct: 115 ---CVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVE 171

Query: 192 ISNLTDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                   Q +HS      +  SS +K+ +     +  +  + G EG G+  +     T+
Sbjct: 172 HCTF----QSVHSRLRVPLLATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTT 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +  PG +++LNV+ AAA+ L+
Sbjct: 228 PVTIPQPGGMESLNVAAAAAICLF 251


>gi|54025800|ref|YP_120042.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54017308|dbj|BAD58678.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 278

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +++V D  N P N+G ++RSA +F    ++ T   +        ++++G+L  +P  
Sbjct: 119 DAPVVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRASTGSLFAVPVF 178

Query: 191 RISNLTDALQ---KMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           R+      L+   +  + G  T  + +D   +    + + ++  I L++G E  G+    
Sbjct: 179 RVPGPAQVLEFRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATI-LVIGNETSGMSAAW 237

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q+    +  + M G   +L   +A AVALY
Sbjct: 238 QDACDELVAIPMGGTASSLGAPSAGAVALY 267


>gi|298253912|ref|ZP_06977499.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532055|gb|EFH71030.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 302

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N GAI+R A    CD ++         +A L +S +G+L H+P +++S + D  
Sbjct: 148 QVRDPGNAGAIIRVADVAGCDAVVFVDDCVSRWNAKLVRSTAGSLFHLPVVQLS-VQDWF 206

Query: 200 QKMHSWGFQTIG---LSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +       + I      +D  KP       +  E+ +  +A++ G E +GL  +  +   
Sbjct: 207 ECAAKANIRVIAADIYGTDKIKPVPFPKILVNSEVISSSLAILFGNEARGLPKEVLQQVD 266

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            ++ + + G  +++N++ +AAV L
Sbjct: 267 DISIIPIYGKAESMNLATSAAVML 290


>gi|39938630|ref|NP_950396.1| rRNA methylase [Onion yellows phytoplasma OY-M]
 gi|39721739|dbj|BAD04229.1| rRNA methylase [Onion yellows phytoplasma OY-M]
          Length = 234

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 3/170 (1%)

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           KE        E   L  PT +    S  ++VLD + DP N+GA++RSA AF  + +  + 
Sbjct: 66  KELSQTKTVFEQMALCKPTSENNLLSDKILVLDDIQDPANLGALMRSASAFGFNQVFASF 125

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIK 225
             +        +S+ GAL  +   R  N    L+++    +         +   +E   K
Sbjct: 126 HSADFYHEKTIRSSQGALFSLSLKR-GNTKSFLEEIKEKNYSIFSAFPQKANITMEDAKK 184

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             K  L+LG EG+G+  +T+  +    ++     +++LNV+ A ++ +Y+
Sbjct: 185 YPKKVLVLGNEGQGISLETEALSDYFVNICTQN-VESLNVAVAGSILMYL 233


>gi|319404923|emb|CBI78523.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
           15-3]
          Length = 282

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 14/152 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALE 185
           R   + + LD V DP N+G I+R+A A    GI+    TT  +SP       ++  G++ 
Sbjct: 122 RVDDVYIALDRVRDPGNLGTIIRTADAAGVKGIVLIGETTDPFSPET----VRATMGSIF 177

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRP 242
            IP  R +  T      H   F+ + + +  K P++    + KN  I L++G E +GL  
Sbjct: 178 SIPLYRCNESTFLNWSTH---FRGMIVGTHLKGPVDYRTIDFKNGPIILLMGNEQQGLSD 234

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  ++A +   G   +LN++ A A+ LY
Sbjct: 235 VLVNHCNNLARIPQCGHADSLNLAVATAIMLY 266


>gi|291528371|emb|CBK93957.1| rRNA methylases [Eubacterium rectale M104/1]
          Length = 263

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 63/140 (45%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VL+ + DP N+G ++R+       GII  +      +    +S  G+L  +P+    +
Sbjct: 113 LLVLESIQDPGNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDD 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + ++   S G          K   ++         ++G EG GL  +  + A +   +
Sbjct: 173 LPETIEYAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + +A + +Y
Sbjct: 233 PMEGAVESLNAAISATLLMY 252


>gi|167751467|ref|ZP_02423594.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
 gi|167655275|gb|EDR99404.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
          Length = 262

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L  + +S+  ++L+++ D  NIG I+RS  AFS DG+I     +   +    +SA G+L 
Sbjct: 108 LSTIDSSRQFIILENLQDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLF 167

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +P I   +  +A+  +   GF       SD    L +E    K A+++G EG G+    
Sbjct: 168 RLP-IYCCDTEEAITLLQKGGFTVYSAELSDRSVRLGEEKLPQKTAVVIGNEGNGVSDTV 226

Query: 245 QETATSMAHLHMP-GIIKALNVSNAAAV 271
           ++       L +P    ++LN S AA+V
Sbjct: 227 KKLCDK--SLFIPISSAESLNASVAASV 252


>gi|34540534|ref|NP_905013.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|34396847|gb|AAQ65912.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
          Length = 254

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGALEHIPY 189
           L ++LD V DP N+G ILR+A  F       G  +   +SP     + +++ GAL  +  
Sbjct: 101 LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPK----VVQASMGALARVQP 156

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK---- 243
             + N  D L      G    G   D +   E  + N  +   L+LG+EG+G+ P+    
Sbjct: 157 TPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAE 216

Query: 244 -TQETATSMAHLHMPGIIKALNVSNAAAV 271
            T       + L + G  ++LNV+ A A+
Sbjct: 217 ITDRLTIPASGLSVKGHTESLNVAIATAI 245


>gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 355

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA+AF  DG           +    +++ GA   +P +   N
Sbjct: 199 VLVLDSIQDPGNLGTLIRSAMAFHWDGAFLLPGCCDPFNDKALRASRGASFQLPIVS-GN 257

Query: 195 LTDALQKMHSWGFQTIGL--SSDSKKP---------LEQEIKNDKIALILGAEGKGLRPK 243
                   H +  + +    ++ ++KP           Q +    + LILG+EG GL  +
Sbjct: 258 WNHLKVLEHEFQMKLLAGHPATSTQKPKLVSKLSVEFAQSVAEKPLCLILGSEGNGLSEQ 317

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +++    +  + M G  ++LNVS A  + L++ Q+
Sbjct: 318 SRKVC-ELVSIPMAGDFESLNVSVAGGIFLFMLQS 351


>gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 282

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   + ++ T      Y+P       +++ G+L H+P
Sbjct: 119 KLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 174

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  +   G + +      +  L+ E+    +    A + G E  GL  +T
Sbjct: 175 VAVGVPVERAVAGLREAGVRVLAADGAGEDDLDTELDGGTMRGPTAWVFGNEAWGLPEET 234

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    ++  + + G  ++LN++ AAAV LY
Sbjct: 235 RALTDAVLRVPIHGKAESLNLATAAAVCLY 264


>gi|150865226|ref|XP_001384357.2| hypothetical protein PICST_31242 [Scheffersomyces stipitis CBS
           6054]
 gi|149386482|gb|ABN66328.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 423

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 121/321 (37%), Gaps = 74/321 (23%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LD 82
           R NH D ++ +    ++         ++YG H+V +AL +  R  +  L   N   R L 
Sbjct: 101 RENHSDSEQYRVSRDRTPIGKNSLFEYVYGTHSVRSALESGKRSSYSRLYVHNCQDRQLI 160

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--------- 133
             A   +   +     +    I+    VH G+ LET  L   T+ ++   Q         
Sbjct: 161 KIAETKYGVKIVERSSKNDLNILCNNGVHNGVVLETKSLELNTIHSLGACQDNEYKVTVY 220

Query: 134 -----------------------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                                        L + LD + DP N+G I+RSA  F  D I+ 
Sbjct: 221 NDLDDAEVEIVKTVARTDPVEDEPVAKMPLGIFLDGITDPQNMGGIIRSAYYFGVDFIVV 280

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP----- 219
              ++     V  K++ GA++ I     +     + ++ + G+  +   S S KP     
Sbjct: 281 PGSHTARLGPVANKASVGAMDLIDIYETNESLKFIDRIRANGWSVV---STSAKPSVDEI 337

Query: 220 ---------LEQEIKNDKIA--------------LILGAEGKGLRPKTQETATSMAHLH- 255
                    +EQ++KN  +               L++G+EG+G+R   +  +  +  +  
Sbjct: 338 NDLKSKHEKVEQQLKNKYVDMNELPNILSQTPVLLVMGSEGEGIRTHMKLRSDFLVGIDK 397

Query: 256 ---MPGIIKALNVSNAAAVAL 273
                 I+ +LNVS A+ + +
Sbjct: 398 GRKQDHIVDSLNVSVASGILI 418


>gi|37678424|ref|NP_933033.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus YJ016]
 gi|37197164|dbj|BAC93004.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 228

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R + L + L+ V+ P+N+ A++R+A A    G+       P+E    L  +++GA   + 
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAMIRTADAT---GLHKVHAVWPTEQMKTLKNTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++ DA+  + + G Q +  + SDS     Q       A+ILG+E  G+  + +  
Sbjct: 73  VDTHDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A AV LY  Q  
Sbjct: 133 ADQDIIIPMVGMVQSLNVSVACAVILYEAQRQ 164


>gi|148544445|ref|YP_001271815.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|184153809|ref|YP_001842150.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363127|ref|ZP_03847262.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682767|ref|ZP_08162283.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148531479|gb|ABQ83478.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|183225153|dbj|BAG25670.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071845|gb|EEI10133.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324977117|gb|EGC14068.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 258

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 38/281 (13%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E++ S+ + H        +D+KK+Q+  +K+R   Q     L G H V  A +    ++ 
Sbjct: 2   EQLTSIHNQHV-------KDWKKLQT--KKARR--QTGTYLLDGWHLVQEA-SKAGIELL 49

Query: 70  QLLATKNALA---RLDWDANLPHPFP-------VKTVPPQTIDKIVGKEAVHQGLALETA 119
           +++ T   LA    L+  AN  +            TV PQ I  +V     H+   L   
Sbjct: 50  EVVGTAEQLAAHPELEGMANATYEVTEEIMKHITDTVTPQGIAAVVALPDSHR---LPAG 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    L           LD V DP N+G ++R+A A    G++  +R +      + +S
Sbjct: 107 PLHGAWL----------FLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRS 156

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGK 238
             G+  H+      +L   +    S      G   + + K        D  ALI+G EG+
Sbjct: 157 MQGSQFHLQMFE-GDLRKWIDDFKSINAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQ 215

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
           G+        T   ++ M G  ++LNV+ +A + ++ + QN
Sbjct: 216 GMSDDLLSQTTDNLYIPMRGEAESLNVAISAGILMFQLNQN 256


>gi|325954534|ref|YP_004238194.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323437152|gb|ADX67616.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 257

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 12/147 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           L++VL+ V  P N+GAILR+A     D +I    T   Y+P+    + +S+ G L     
Sbjct: 110 LILVLEAVEKPGNLGAILRTADGAKVDAVIVCDETVDFYNPN----VIRSSVGTL-FTNQ 164

Query: 190 IRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           I   +  + L  + +   Q +   L  ++K   E +  +   A++LG E  GL     + 
Sbjct: 165 IASGSKEEVLNFLKNNNIQIVSTFLRDNTKSLYEMDFSSSS-AIVLGTEATGLSDFWADE 223

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  + M G + +LNVSNAAA+ +Y
Sbjct: 224 SDVLIKIPMLGKVDSLNVSNAAAICVY 250


>gi|281425955|ref|ZP_06256868.1| RNA methylase, SpoU family [Prevotella oris F0302]
 gi|299142398|ref|ZP_07035530.1| RNA methylase, SpoU family [Prevotella oris C735]
 gi|281399848|gb|EFB30679.1| RNA methylase, SpoU family [Prevotella oris F0302]
 gi|298576120|gb|EFI47994.1| RNA methylase, SpoU family [Prevotella oris C735]
          Length = 179

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L T  +   ++D  + ++   L++VLD V   +N+G++ RS  AF  + +      +   
Sbjct: 4   LRTIEMKRLSIDEFKEAEKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---- 228
           +A + K+A G  + + +       +A++ +H  G+    +       + QE+  DK    
Sbjct: 64  NAEIHKTALGGEDSVAWKYFERTEEAVEALHHDGYFVYSIEQVEGSTMLQELTIDKPLTS 123

Query: 229 --IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A+I+G E KG++ +  + +     +   G   +LNVS  A + ++
Sbjct: 124 KGYAVIMGNEVKGVKQQVIDMSDGCLEIPQFGTKHSLNVSTTAGIVMW 171


>gi|169632711|ref|YP_001706447.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|169795055|ref|YP_001712848.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|184159160|ref|YP_001847499.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|213158283|ref|YP_002320334.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057]
 gi|215482603|ref|YP_002324795.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301346649|ref|ZP_07227390.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB056]
 gi|301512367|ref|ZP_07237604.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB058]
 gi|301596456|ref|ZP_07241464.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB059]
 gi|332851098|ref|ZP_08433207.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013150]
 gi|332869629|ref|ZP_08438840.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013113]
 gi|332875988|ref|ZP_08443774.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6014059]
 gi|169147982|emb|CAM85845.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|169151503|emb|CAP00266.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183210754|gb|ACC58152.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|213057443|gb|ACJ42345.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057]
 gi|213988442|gb|ACJ58741.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|322509073|gb|ADX04527.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323519054|gb|ADX93435.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332730262|gb|EGJ61587.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013150]
 gi|332732676|gb|EGJ63908.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013113]
 gi|332735854|gb|EGJ66895.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6014059]
          Length = 258

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106
           L G H   A L    +K+F L  T+ AL   D     + +  H F +  V  + +  +  
Sbjct: 35  LEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDLKKIIELHQGHVFIISEVLYKDLSTLGN 93

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  LA+   P  + T+D   ++   ++L++V DP N+G +LRSA A +   II T+
Sbjct: 94  TLPC---LAIIDLPKTASTIDYSVDT---LILENVQDPGNVGTLLRSAAAANIKQIICTQ 147

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   S  + ++  GA   +       LTD L K     F T   SS     L  +  +
Sbjct: 148 GSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSKDLS 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ILG EG+G      E A S+  +  PG  ++LNV+ A ++  +
Sbjct: 205 KPCVWILGNEGQGASDYALEHAQSVT-IPQPGGQESLNVAIAGSICFF 251


>gi|328545333|ref|YP_004305442.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1]
 gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
          Length = 279

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + + + LD V DP N+G I+R+A A    G++     +   +    ++  G+L H+P  R
Sbjct: 129 ATVWIALDRVRDPGNLGTIIRTADAVGASGVMLVGDCTDPFAVEAVRATMGSLFHVPLAR 188

Query: 192 ISNLTDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +S  TDA + + + W    +G   +          ++   L++G E +GL        + 
Sbjct: 189 LS--TDAFKALAAKWPGMVVGTHLEGSVDYRSLDYSEPALLLMGNEQQGLPADMAACCSH 246

Query: 251 MAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
           +  +   G   +LN++ A  +ALY I + H +
Sbjct: 247 LVRIPQVGQADSLNLAVATGIALYEIRRKHLS 278


>gi|154687000|ref|YP_001422161.1| YsgA [Bacillus amyloliquefaciens FZB42]
 gi|154352851|gb|ABS74930.1| YsgA [Bacillus amyloliquefaciens FZB42]
          Length = 248

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 3/147 (2%)

Query: 130 RNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           R  QL  L+++D V DP N+G ++R+A A   D ++  +  +   +    +SA G+  HI
Sbjct: 99  RPDQLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHI 158

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P ++   L +   ++ S G    G + ++    +     +  ALI+G EG G+     + 
Sbjct: 159 PILK-RPLDEFTAELKSQGVAIYGTALENGAAYQSVKPEESFALIVGNEGAGVDAGLLQK 217

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                ++ + G  ++LNV+ AAA+ +Y
Sbjct: 218 TDLNLYVPLYGQAESLNVAVAAAILVY 244


>gi|309812910|ref|ZP_07706638.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308432982|gb|EFP56886.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 270

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 89/183 (48%), Gaps = 3/183 (1%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           + TV  Q  +++  +E     LA+  +    P +  +  + LL+V + V  P N+GA+LR
Sbjct: 80  IVTVARQAFERVAYREGPDGFLAVVPSVNAHPRMLDLPANPLLLVAEGVEKPGNLGAMLR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A   DG+I     +   +  + + + G +  +P +  +  ++ L+ +       I  
Sbjct: 140 TADAVGVDGVIAADPVTDWGNPNVVRGSKGTVFSVP-VAAAPTSETLEWLRDNDIPLIAT 198

Query: 213 SSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           + D+   +  +I  +  +A+ +G E  GL  +    ATS   + M G + +LNV+ +AA+
Sbjct: 199 TPDTDV-MHTDIDLSGPVAVAVGTEKYGLTDEMLGAATSRVRIPMVGQVNSLNVATSAAI 257

Query: 272 ALY 274
            LY
Sbjct: 258 VLY 260


>gi|295693354|ref|YP_003601964.1| rRNA methylase [Lactobacillus crispatus ST1]
 gi|295031460|emb|CBL50939.1| rRNA methylase [Lactobacillus crispatus ST1]
          Length = 255

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG+I +   +   +    ++  G+  HI  I+  +L
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVILSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172

Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +    +          D S K L    K  ++ALI+G E  G+ P     A    ++
Sbjct: 173 ADVITDFQAAAIPVYASMLDRSAKQLPDFEKVPQLALIIGNEAHGVSPTIASLADEKLYI 232

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            + G  ++LN + AA + +Y    HFA
Sbjct: 233 PIKGQAESLNAAVAAGIMIY----HFA 255


>gi|227548325|ref|ZP_03978374.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079643|gb|EEI17606.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 273

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 92/209 (44%), Gaps = 13/209 (6%)

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDH 140
           D+   LP    V  V    + ++ G + +H+GL A+   P      +    ++ L++L+ 
Sbjct: 63  DYGEVLPASVGVYEVTRPLLAEVAGYD-MHRGLIAVAERPQPLSVAEVTDGARTLVILEG 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V D  NIG+I R+A     DG++     +        + + G    +P+  +       Q
Sbjct: 122 VGDHENIGSIFRNAAGMDVDGVLFGAATADPLYRRSVRVSMGHALRLPFAHLDGTATTWQ 181

Query: 201 K----MHSWGFQTIGLS-SDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETAT 249
           +    +   G++ + L+  D+ + L + + +      DK+AL++G EG GL         
Sbjct: 182 RSLDELRLTGWRLLSLTPDDAAEHLAEALVDATGRPWDKVALLVGGEGPGLTEHAMRATH 241

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
             A + M     +LNV+ +AA+A Y  Q 
Sbjct: 242 VRARIPMAPGTDSLNVATSAAIAFYERQR 270


>gi|145640385|ref|ZP_01795969.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae R3021]
 gi|145274971|gb|EDK14833.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 22.4-21]
          Length = 351

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 19/202 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96
           ++ E + +YG +   A     +  I +L AT          L+ L  +    H      V
Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167

Query: 97  PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             + + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +LR
Sbjct: 168 DSEELARVSGTEH-HAGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLR 226

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +   F    I+     +    A + + A G  E+I  +    +  AL  +   G+Q I +
Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDYIDSALMHLRKSGYQVIHV 285

Query: 213 SSDSK-KPLEQEIKNDKIALIL 233
           S + +  PL++    +K+  +L
Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307


>gi|209550660|ref|YP_002282577.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536416|gb|ACI56351.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 274

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 22/261 (8%)

Query: 29  DYKKMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-- 85
           D  ++  F N + R  +  EN F+     V   L     +    LA K  L R   D   
Sbjct: 12  DDPRIAEFRNIRERDLTGRENRFIAEGTVVLRMLAEAHAQDRGFLAEKILLLRNRVDGVM 71

Query: 86  ----NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-------ETAPLLSPTLDAVRNSQ 133
                LP   PV       +D +VG   +H+G LAL       E A      L+A+    
Sbjct: 72  PILERLPADVPVYVAEADVLDGVVGFH-LHRGVLALGRREDRGEAA-----LLEALPERA 125

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V   +++  N G++ R+A AF  D ++  +           + + G++  +P++R  
Sbjct: 126 LVLVGCGISNHDNAGSMFRNAAAFRADALLLDETCCDPLYRKALRVSVGSVLSVPHLRGG 185

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              D L  +   GF    LS   K  +     + ++AL++G EG+GL P+        A 
Sbjct: 186 KAMDVLLSLAERGFAIWTLSPHGKTDIRAIPASARMALVIGTEGEGL-PEALLARFHSAR 244

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +     + +LN + A  +AL+
Sbjct: 245 IPQSEDLDSLNAATATGIALF 265


>gi|154493345|ref|ZP_02032665.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
           43184]
 gi|154086555|gb|EDN85600.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
           43184]
          Length = 176

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 122 LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L+P  +A ++S+   L++VLDHV   +N+G++ R++ AF  + I      +    A + K
Sbjct: 12  LTP--EAFKDSKKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHK 69

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGA 235
           +A GA E + +    +  +A+ K+   G+    +       +   +   KN K A+I+G 
Sbjct: 70  TALGAEETVDWEYFEDTMEAVDKLKQQGYTVCAVEQAEGSTMLDNLLLDKNKKYAVIMGN 129

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E KG++    +       +   G   +LNVS    + ++
Sbjct: 130 EVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIW 168


>gi|295134598|ref|YP_003585274.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294982613|gb|ADF53078.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 168

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLDH++   NIG+I R + AF  + II         S  L K++    E++ +    N 
Sbjct: 19  LVLDHISGEANIGSIFRLSDAFHVEEIIFCGTEPNLNSNRLKKTSRSTHEYVKFQFSENP 78

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIK-NDKIALILGAEGKGLRPKTQETATSMA 252
           T  ++   +  +  I L  + +  P++Q E+K ++K+ LI G E  G+         S+ 
Sbjct: 79  TAIIKGKKAEAYSIIALEITQNSVPIQQLELKPSEKVVLIAGHENFGISEDLLRLCDSIV 138

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
           H+ M G   ++NV+ A  ++LY
Sbjct: 139 HIPMFGNNSSMNVAQAIGISLY 160


>gi|89076058|ref|ZP_01162418.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89048210|gb|EAR53792.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A    G+       P E+  VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GVHKVHAVWPKENMKVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ +A+Q +   G Q +  + SD+             A+ILG E  G+  +  
Sbjct: 71  VELDTHDSMVEAVQTLKDQGMQVLATNLSDTAIDFRDVDYTKPTAVILGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 AMADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164


>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
          Length = 1145

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 20/159 (12%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD--------GIITTKRYSPSESAVLAKSASGALE 185
           ++++LD V +P NIG+I+R+   F  +        G   + R +P  +A    S+ GA+E
Sbjct: 322 IVVLLDGVENPMNIGSIVRTCAGFGVETLYLFNQEGASASGRVNPFSTASYL-SSRGAIE 380

Query: 186 HIPYIRISNLTDALQKMHSWGFQ------TIGLSSDSKKPLEQE-----IKNDKIALILG 234
           H+  I I+    A+  +  +  Q      T    SD    L  E     +    + LI G
Sbjct: 381 HLDVIPITARNTAINMIKEFAEQKWEIVSTATAISDKALTLFSEGSALTLGTKPLLLIFG 440

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +E  G+ P   + +T+   +   G+I +LNVS +AA+ L
Sbjct: 441 SESHGINPGIAKLSTATLTIPGTGLIDSLNVSQSAAIIL 479


>gi|163792968|ref|ZP_02186944.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159181614|gb|EDP66126.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 270

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ + DP N+G+I+RSA AF+  G++         S    +++ G++ ++P IR+   
Sbjct: 125 LALEGIRDPGNLGSIIRSADAFAVAGVLLIGNTVDPFSTEAVRASMGSIVNVPLIRLDEA 184

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L     W  +T+G    ++   E   +     L++G E  GL  +   T   +  + 
Sbjct: 185 A-YLDWHRGWTGRTVGTHLRAELQPESVERGSATLLVMGNEQSGLPARIAATCNQLVRIP 243

Query: 256 MPGIIKALNVSNAAAVALY 274
           M     +LN++ A A+ LY
Sbjct: 244 MRDGADSLNLAAATAIMLY 262


>gi|288800355|ref|ZP_06405813.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332568|gb|EFC71048.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 176

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 13/174 (7%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            LE   L      A R   L++VLD+V   HN+G++ RS  AF  + +      +   SA
Sbjct: 6   VLEMNRLTVEEFKAARKLPLVVVLDNVRSLHNVGSVFRSCDAFRIEAVYLCGITATPPSA 65

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGF------QTIGLSSDSKKPLEQEIKNDK 228
            + K+A GA + + +    +  DA++++    +      Q  G  + +K  L+    + +
Sbjct: 66  EIHKTALGAEDSVSWKYYKSTLDAVEELKQQDYFVYSIEQVEGSQNMAKINLDH---SKR 122

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A++LG E KG++ +    + S   +   G   +LNVS  A + ++     FAK
Sbjct: 123 YAVVLGNEVKGVQQEVVNASDSCLEIPQLGTKHSLNVSVTAGIVVW----EFAK 172


>gi|256391520|ref|YP_003113084.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256357746|gb|ACU71243.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 269

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++V++ + +  N+GAI RSA A   D  + T   +        + + G +  +PY R+ +
Sbjct: 121 VVVMEDIVNHTNLGAIFRSAAALGMDAAVLTPSCADPLYRRSVRVSMGTVFALPYARLDS 180

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSM 251
               L  +   GF+TI L+        ++++    DK+AL+LG EG GL       A   
Sbjct: 181 WPGGLTTLAEHGFRTIALTPGPTAIDLRDLRFGPEDKVALLLGTEGDGLSDPALAAADMR 240

Query: 252 AHLHMPGIIKALNV 265
             + M   + +LNV
Sbjct: 241 VRIPMTAGVDSLNV 254


>gi|110833674|ref|YP_692533.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110646785|emb|CAL16261.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
          Length = 230

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 10/156 (6%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAK- 178
           +  TLD  R   L +++D V+ PHNI AI+R+     CD  GI+      P   A +A  
Sbjct: 9   ICDTLDR-RQPDLTVIMDGVHKPHNIAAIVRT-----CDAVGILDVHAVLPKNRARMAAG 62

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237
           +A G+   +   +    TD ++++   G Q +    SD      Q       AL+LG E 
Sbjct: 63  TAMGSQRWVQVHKRDESTDVIRELQGQGVQVLAAHLSDDAIEYRQVDYTRPTALLLGTEK 122

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G+  +          + M G++++ NVS AAA+ L
Sbjct: 123 FGVSDEVASAVDQNVTIPMMGMVESFNVSVAAAIIL 158


>gi|90581394|ref|ZP_01237189.1| putative tRNA methyltransferase [Vibrio angustum S14]
 gi|90437371|gb|EAS62567.1| putative tRNA methyltransferase [Vibrio angustum S14]
          Length = 241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A    G+       P E   VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAV---GVHKVHAVWPKEGMKVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ +A+Q +   G Q +  + SD+             A+ILG E  G+  +  
Sbjct: 71  VELDTHDSMVEAVQALKDQGMQVLATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 AMADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164


>gi|309782123|ref|ZP_07676853.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
 gi|308919189|gb|EFP64856.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
          Length = 260

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 31/263 (11%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  +K +++ +  ++H  +     L GVH V+A L+        L++ ++        
Sbjct: 7   RDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVAAYLDAGHMPAQCLVSERH-------- 58

Query: 85  ANLPHP---FPVKTVPPQTI----DKIVGK-EAVHQG---LALETAPL--LSPTLDAVRN 131
             + HP     +  V P T+    D + G+   V  G   +AL   P   L  T+DA   
Sbjct: 59  --IRHPEVAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETPEGKLPQTIDAD-- 114

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  + 
Sbjct: 115 ---CVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVE 171

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                    ++       +  SS +K+ +     N  +  + G EG G+  +     T+ 
Sbjct: 172 HCTFESVHSRLQ---VPLLATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTP 228

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +  PG +++LNV+ AAA+ L+
Sbjct: 229 VTIPQPGGMESLNVAAAAAICLF 251


>gi|167856325|ref|ZP_02479055.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219871054|ref|YP_002475429.1| rRNA methyltransferase [Haemophilus parasuis SH0165]
 gi|167852555|gb|EDS23839.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219691258|gb|ACL32481.1| rRNA methyltransferase [Haemophilus parasuis SH0165]
          Length = 335

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 13/192 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +YG H  SA        I +L  T    K   A L + A+  H      V  + + ++ G
Sbjct: 101 VYGEHACSAIFQQRPEAIVRLWITSECAKKTGALLSYLAD--HKKAYHLVDTEEMLRVTG 158

Query: 107 KEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            E  H G+ L   ++ P  L   L   R    L++LD VN+  NIG I+R+   +   GI
Sbjct: 159 TEH-HGGMCLLVKKSTPFSLEGYLQLERQHDCLILLDGVNNAQNIGGIIRTCAFYGIKGI 217

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LE 221
           I         S+  A+ A G LE +  +   +   AL ++   G+Q + L+   + P L 
Sbjct: 218 IVENN-DILNSSNAARVAEGGLEFVYPLETKHKHIALMQLRKAGYQIVHLTRQRQAPHLS 276

Query: 222 QEIKNDKIALIL 233
           + + + KI  +L
Sbjct: 277 RIVLSKKIVFVL 288


>gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 266

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 108/250 (43%), Gaps = 13/250 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIF--QLLATKNALARLDWD 84
           + K +    Q SR   +   + L G+H   + L       +I+  +  A K  + RL  D
Sbjct: 15  EVKALARLVQHSRDRRKEGVMVLEGIHLAESCLQAGGELSRIYLNEAAAGKPEVRRL-LD 73

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +LP    V ++P   + K+    +  + LAL   P  SP     + ++++  L+ + DP
Sbjct: 74  -SLPPGSTVVSLPEAVMSKVTALASAGELLALSPRP--SPEAPPAQAARVM--LEDIQDP 128

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+A A     +  +K      S  + ++  GA  H   +RI    D   ++  
Sbjct: 129 GNLGTILRTAAAAGVYDVFLSKGCVDVFSPKVLRAGMGA--HF-ALRIHEHADLAGELSR 185

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +G + +    +    L        +A + G EG G+       A +   + MPG  ++LN
Sbjct: 186 FGGRKLVTHLEGSSSLYGHDLTGPVAFVFGNEGAGVSDALLALADARIRIPMPGHAESLN 245

Query: 265 VSNAAAVALY 274
           V+ AA V L+
Sbjct: 246 VAMAATVCLF 255


>gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 287

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ +L +V DP N G +LR A A   + ++ T      Y+P       +++ G+L H+P
Sbjct: 124 RLVALLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDVYNPKA----VRASVGSLFHLP 179

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                ++  A++ + + G + +       + L+ E+    +    A + G E  GL  +T
Sbjct: 180 VAVGVSVERAVEGLRAEGVRVLAADGAGDRDLDAELDKGTMGGPTAWVFGNEAWGLPEET 239

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    ++  + + G  ++LN++ AAAV LY
Sbjct: 240 RALTDAVVRVPIHGKAESLNLATAAAVCLY 269


>gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688]
 gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688]
          Length = 260

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +P L      + +++L+ + DP N+G++LRSA A     +  ++  + + S    +   G
Sbjct: 103 TPQLPLPETLEFVLMLEDIQDPGNLGSMLRSAAAAGVQVVYLSEGCAEAWSPKALRGGQG 162

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A   +P +  S+L   L    ++  +T+      +    Q ++   +A ++G EG GL  
Sbjct: 163 AQFVLPVVERSDL---LALAGNFPGETLATVMQGESLYAQNLRQ-PVAFLIGNEGAGLSL 218

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K Q  A+   H+ M G +++LN + A ++ ++
Sbjct: 219 KLQAAASRKIHIPMQGQVESLNAAAATSICVF 250


>gi|189500156|ref|YP_001959626.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           BS1]
 gi|189495597|gb|ACE04145.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           BS1]
          Length = 216

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 11/157 (7%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL---AKSASG 182
           L A R   L +++D+VN PHN+ AI+RS     CD +     ++ SE  ++    ++A G
Sbjct: 13  LLAYRQPDLTVLMDNVNKPHNLSAIIRS-----CDAVGIETVHAVSEEKIIKNRQRAARG 67

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGL 240
           + + +       +  A   + + G Q + ++   ++ ++    +  +  A+++GAE  G 
Sbjct: 68  SSKWVNLELHETIEHAFACLRAQGMQVL-VAHHHEESVDFRTLDYTLPTAIVMGAELFGP 126

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              T   A    H+ M G++++LNVS AAAV L+  Q
Sbjct: 127 SATTLSGADHCIHIPMQGMVESLNVSVAAAVILFEAQ 163


>gi|319406810|emb|CBI80443.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
           1-1C]
          Length = 271

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 5/153 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P+  VP + +D I G   VH+G+      +  P L   L  +    L+ VL  +++  ++
Sbjct: 78  PIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPSLKKFLQNLPEKALISVLCGISNYESM 136

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R+A AF+  GII  K           ++++GA   +PY R  ++   +  +    F
Sbjct: 137 GAIFRNAAAFASTGIILDKTCCDPLYRKSIRASAGAALSVPYTRGDDIESIITALSDANF 196

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +   LS  +   L+        ALI G EG  L
Sbjct: 197 ELYTLSPSATCYLKDAKATKHTALIFGIEGNDL 229


>gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
 gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
          Length = 241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 17/149 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHIPY 189
           S  +++LDH++DP N+G I+RSA AF    II TK      +E  + A   S   E+I  
Sbjct: 98  SDRILLLDHISDPGNMGTIIRSAEAFGFSDIILTKGCVDIYNEKCLRASMGSVFRENIVE 157

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-----DSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           + +  +   L+K + +      LSS     D +K    +  ND I L +G E  GL    
Sbjct: 158 LSLEEIR-KLKKNYRF------LSSHMEGIDVRK---YDSSNDSIILAIGNEANGLSEDI 207

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++       + M G I++LN + AA++ +
Sbjct: 208 RKLTDDFIKISMQGKIESLNAAIAASIMM 236


>gi|320334385|ref|YP_004171096.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM
           21211]
 gi|319755674|gb|ADV67431.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM
           21211]
          Length = 266

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 2/141 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VL  V  P N+GA+LRSA     D ++           V+  S         +    
Sbjct: 117 LLLVLVGVEKPGNVGALLRSADGVGADAVLVVGGVDLENPNVIRASQGSVFTQTLFTLPE 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              DAL  + + GF+   ++ D  +         ++A+ LGAE  GL    +E       
Sbjct: 177 --ADALPWLRAQGFRVAAITPDGAQNYWDADLTGRVAVCLGAEHAGLPAAWREHPDLKLA 234

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G   +LNVS A A+ LY
Sbjct: 235 IPMRGAADSLNVSTAGALVLY 255


>gi|314933335|ref|ZP_07840700.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
 gi|313653485|gb|EFS17242.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
          Length = 246

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P  + +   Q+L++ D + DP N+G ++R+A A   D I+  K  +      + +++ G+
Sbjct: 97  PQYNEIEALQVLLI-DRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRASQGS 155

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + HIP + I +L   + +     + T   ++ S K +E +    + AL+LG EG+G+   
Sbjct: 156 IFHIPVV-IKDLATYITEFEGPVYGTALENAVSFKEIESQ---SQFALLLGNEGEGVNKD 211

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  T    + + G  ++LNV+ A ++ LY
Sbjct: 212 LLQRTTKNLIIPIYGKAESLNVAIAGSILLY 242


>gi|302326903|gb|ADL26104.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 241

 Score = 54.7 bits (130), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIR 191
           Q  +++ ++    N+G+I+RS   F  +G+  +  YS S   V  KSA+ G  E IP  R
Sbjct: 92  QFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSG-YSCSPDHVTVKSAARGCQEWIPIKR 150

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS 250
             +  D ++     G++ I L +    P    +K  +K  ++LG E  G+ P+    AT 
Sbjct: 151 WDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEIMAEATM 210

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M G   ++NV+ A A+  +  +++
Sbjct: 211 KVTIPMAGRKASMNVAGAFAIMAFCLRSN 239


>gi|261414776|ref|YP_003248459.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371232|gb|ACX73977.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 250

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIR 191
           Q  +++ ++    N+G+I+RS   F  +G+  +  YS S   V  KSA+ G  E IP  R
Sbjct: 101 QFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSG-YSCSPDHVTVKSAARGCQEWIPIKR 159

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250
             +  D ++     G++ I L +    P    +K  +K  ++LG E  G+ P+    AT 
Sbjct: 160 WDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGLIVLGNEELGIAPEIMAEATM 219

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M G   ++NV+ A A+  +  +++
Sbjct: 220 KVTIPMAGRKASMNVAGAFAIMAFCLRSN 248


>gi|238923439|ref|YP_002936955.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
           ATCC 33656]
 gi|238875114|gb|ACR74821.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
           ATCC 33656]
          Length = 263

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 63/140 (45%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VL+ + DP N+G ++R+       GII  +      +    +S  G+L  +P+    +
Sbjct: 113 LLVLESIQDPGNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDD 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + ++   S G          K   ++         ++G EG GL  +  + A +   +
Sbjct: 173 LPETIEYAKSKGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + +A + +Y
Sbjct: 233 PMEGAVESLNAAISATLLMY 252


>gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 257

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 122/272 (44%), Gaps = 30/272 (11%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+ + H        +D++K+Q+   + +         L G H V  A ++  R   
Sbjct: 3   EQITSVHNQHV-------KDWRKLQTRKGRKKFGQ----YLLDGWHLVQEASHSNQR--- 48

Query: 70  QLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            L+A   +   L    ++   F  V  V P+ I  I  +    QG+    A +  P ++ 
Sbjct: 49  -LIALIGSAEELSQHEDIVARFENVYEVTPEIIKHIT-ETNTPQGI---VAVVEMPDVNQ 103

Query: 129 VRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           V N  +   ++LD V DP N+G ++R+A A    G++ +KR +   +  + +S  G+  H
Sbjct: 104 VTNPKTGAWLLLDRVQDPGNVGTMVRTADAAGFAGVVASKRTADFFNPKVVRSMQGSQFH 163

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRP 242
           +  + +++L   +           G   +   PL +  +        AL++G EG+G+  
Sbjct: 164 LQLV-VADLKRWINDFQDDQHPVYGTQLN---PLAKNFRHVQPGKDFALVMGNEGQGMAE 219

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     T+  ++ M G  ++LNV+ +A + ++
Sbjct: 220 ELLNQTTTNLYIPMRGNAESLNVAVSAGILMF 251


>gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773]
          Length = 257

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 107/229 (46%), Gaps = 12/229 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L G H V  A+   + K   ++AT+  +A    D  +PH  P   +  +    I G   
Sbjct: 31  LLDGWHLVEEAIKAKA-KFHAVMATEAQMAEHLPD--VPHGVPAFEISEEVAKHIAGTN- 86

Query: 110 VHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             QG+  E + L   T D +  +    ++LD + DP N+G ++R+A A    G++  +  
Sbjct: 87  TPQGIFAEIS-LPDKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGEGT 145

Query: 169 SPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK- 225
           + + S  + ++  G+  H+  +   ++  TDAL      G    G   D      ++I+ 
Sbjct: 146 ADAYSPKVVRAMQGSQFHLEVLNGDLNEWTDALTAN---GLPVYGSQLDEAAQSYRQIEP 202

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + ALI+G EG+G+  +     T+  ++ + G  ++LNV+ A  + ++
Sbjct: 203 STQFALIVGNEGQGMSEELAAKTTANLYIPIQGQAESLNVAIAGGILMF 251


>gi|317480785|ref|ZP_07939871.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|316903126|gb|EFV24994.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 265

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + + ++ G       L     P+     D  R ++ ++V+D V D  NIGAI
Sbjct: 78  IPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++ T+      +    + + G +  +P+  +    D L ++   GF+T 
Sbjct: 138 FRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGEL---GFRTA 194

Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            ++ +D+   ++  +     ++A+++G EG GL  +    A  +  + M   + +LN
Sbjct: 195 AMALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLN 251


>gi|260462507|ref|ZP_05810714.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259031703|gb|EEW32972.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 265

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 10/198 (5%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPTLDAVRNSQLLMVLDHVND 143
           P   PV  V    +D I G   +H+G LA+   ET     P LDA+    L++VL  +++
Sbjct: 72  PVDLPVYIVTGAVMDAIAGFH-LHRGILAIGRKETPQPAGPLLDALPALALVVVLVGISN 130

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+I R+A AF  D ++              + + GA   IP+   ++       + 
Sbjct: 131 HDNMGSIFRNAAAFGADAVLIDATCCDPLYRKAIRVSVGAALKIPFASFTDTAGFTAMLA 190

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             GF+   LS   +  +       ++AL LG EG+GL P++         + M     +L
Sbjct: 191 ERGFEQFALSPRGRTDIRDAKSAGRLALYLGTEGEGL-PESLLARLQTVRITMAEGFDSL 249

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ A+A+AL+    HF+
Sbjct: 250 NVAAASAIALH----HFS 263


>gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
           105476]
 gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           tribocorum CIP 105476]
          Length = 284

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 18/148 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           + LD V DP N+G I+R+A A S  G+I    TT  +SP       ++  G++  IP  R
Sbjct: 128 IALDRVRDPGNLGTIIRTADAVSAKGVILIGETTDPFSPET----VRATMGSIFSIPLYR 183

Query: 192 ISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQE 246
                       +W   F+ + + +  K  L+    ++KN  I L++G E +GL      
Sbjct: 184 FDE-----SAFLNWSSCFKGMIVGTHLKGSLDYRKLDLKNGPIILLMGNEKQGLSDILTN 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
               +A +   G   +LN++ A AV LY
Sbjct: 239 RCDKLARIPQSGRADSLNLAIATAVMLY 266


>gi|313904294|ref|ZP_07837672.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
 gi|313470844|gb|EFR66168.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
          Length = 283

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 16/187 (8%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV     + + +I G       L     P L    +  R+ + ++ L+ V +P N+GAI 
Sbjct: 83  PVYVAEEKVLSRITGFRLTRGMLCAMRRPSLPGMEELCRDKRRIVFLEDVVNPTNVGAIF 142

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---------RISNLTDALQKM 202
           RSA A   + ++ T   S       A+ + G +  IP+          R       ++++
Sbjct: 143 RSAAALGMEAVVLTPGSSDPLYRRAARVSMGTVFQIPWTYSPAPASLPREEWPQAGIRRL 202

Query: 203 HSWGFQT--IGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
              GF T  + L +D+     P+    + +K+A++LG EG GL  K+ ET      + M 
Sbjct: 203 KELGFVTAAMALRNDTVSIDDPVFD--RTEKLAVVLGTEGDGLAAKSMETCDYTIKIPMT 260

Query: 258 GIIKALN 264
             + +LN
Sbjct: 261 HGVDSLN 267


>gi|218438771|ref|YP_002377100.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
 gi|218171499|gb|ACK70232.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
          Length = 265

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 2/142 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++L+ + DP N+G I+R+AVA   D +  T      ++  + ++++G    +P     
Sbjct: 112 LGLMLERLQDPGNLGTIIRTAVATEVDQLWLTHDSVDLDNPKVLRASAGEWFRVPMRVSD 171

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252
           NL   ++       Q IG      K    EI   +  LI LG EG GL P+         
Sbjct: 172 NLGALIEGYKRQQVQVIGTLPQGNKTY-WEIDFTRPTLILLGNEGAGLTPELVSLVDQQV 230

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + + G +++LNV+ AAA+ LY
Sbjct: 231 TIPLGGGVESLNVAIAAALLLY 252


>gi|182412678|ref|YP_001817744.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177839892|gb|ACB74144.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 296

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 17/218 (7%)

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ------TIDKIVGKEAVHQGLALETAP 120
           ++F+L  TK+A A++   A    P  +  V PQ       +DKIV            T P
Sbjct: 78  QLFEL--TKSAFAKV---AYRERPDGLLAVAPQWKRTLQDLDKIVAGSGGPG-RPGSTTP 131

Query: 121 LLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             +  + A    ++ +  ++V++ +  P N+G ILRSA A  CD +I     +   +  +
Sbjct: 132 ATTSAVGAGAPDLQRAPFILVVEAIEKPGNLGTILRSADAAGCDAVIVCDPVTDIFNPNV 191

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            ++++G L  +P + ++     L  + + G +TI  +  ++K          +A+++G+E
Sbjct: 192 VRASTGVLFSVPLV-VAESAPVLAWLRAQGVRTIATTPAAEKLYTDADLRGPLAIVMGSE 250

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL     +       + M G   +LNV+ A  + L+
Sbjct: 251 QYGLSEFWLKNCDLPVRIPMAGQADSLNVAMATIITLF 288


>gi|297560901|ref|YP_003679875.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845349|gb|ADH67369.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 221

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 1/144 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +L ++++ V  P+N+G+ILR+A  F  D +  T   +  +   + K+A G    + + 
Sbjct: 57  EGRLALLVESVTQPYNLGSILRTAATFGVDQLWLTGNSANPDDPKVGKTALGTAAKVEHT 116

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           R+++  DAL    + G++ + +   S   PL        + L +GAE  G  P     A 
Sbjct: 117 RMASTADALAAARADGYRVVAVELASGALPLHAAPLEPDVCLAVGAEDHGCSPALLAGAD 176

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
           ++ ++   G + +LNV+ A A+AL
Sbjct: 177 AVTYVPQIGRVGSLNVAVATAIAL 200


>gi|254527140|ref|ZP_05139192.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
 gi|221538564|gb|EEE41017.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
          Length = 237

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 16/162 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++VLD + DP N+G + R+A+A   D I       P    VL +++SGA+ H+P++R  
Sbjct: 73  FVLVLDRIQDPGNMGNLFRTALAAGVDAIFLAGGAHPLGQKVL-RASSGAVFHLPFLRFD 131

Query: 194 NLTDALQKMHSW--------GFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKG 239
              + +              GF+    SS++K   +          + + ALILG EG+G
Sbjct: 132 GTEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSRRTALILGNEGQG 191

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  K QE       +    ++++LNV+   AV L + +   A
Sbjct: 192 IHKKIQEAFNETITIPHSELVESLNVA-CVAVPLLLERKRVA 232


>gi|313674753|ref|YP_004052749.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312941451|gb|ADR20641.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 231

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 15/154 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IP 188
           R   + +VL+ + DPHN  AI+RS     C GI   + Y   E+  + K   G     I 
Sbjct: 32  RTDFIRVVLEDIRDPHNANAIIRSG---ECLGI---QHYHIIENENVFKLGRGVSRGAIK 85

Query: 189 YIRISNL-------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGL 240
           ++ +           DAL  + S G++ +  S + +    +E+  D+ IA+++G E  G+
Sbjct: 86  WVDVHQYPESKTPTADALHDLKSQGYKIVVTSPNKEACAPEELALDQPIAIVMGNERDGI 145

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + +  A     L M G  ++ NVS A+ +  Y
Sbjct: 146 SEEAKSMADEFVRLPMHGFTESYNVSVASGITFY 179


>gi|227495545|ref|ZP_03925861.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831092|gb|EEH63475.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 304

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 17/213 (7%)

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTL-DAVRN 131
           +  L R   DA      PV     + ++ + G   +H+G   A+   PL  PT  D ++ 
Sbjct: 99  REVLERFGPDAG---EVPVFIASEEMLETLTGFH-LHRGAMAAMHRLPL--PTAADLLKT 152

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++ + VL+ + D  N+GAI RSA A   D ++ T   +        + + G +  +P+ R
Sbjct: 153 ARRIAVLEDIVDHTNVGAIFRSAAAIGVDAVLVTPSCADPLFRRSVRVSMGTVFQVPWTR 212

Query: 192 ISNLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKT 244
           +    +  Q     GF+     +G ++ +      E+  D   ++A +LG+EG GL+ +T
Sbjct: 213 LETWPEP-QLFREHGFEVAALALGENTITLDDYTAELATDPARRVAWVLGSEGYGLKERT 271

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             T      + M   + +LNV+ AAAV  + T+
Sbjct: 272 LRTVDKTVMIPMQHGVDSLNVAAAAAVTFWATK 304


>gi|329946902|ref|ZP_08294314.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526713|gb|EGF53726.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 286

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 17/188 (9%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQG-LA------LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           PV   P + ++ I G   +H+G LA      L + P L         ++ + +L+ + D 
Sbjct: 86  PVFVAPEEVLESITGFH-LHRGALAAMNRPELASVPELLSAARGGAGARRVAILEDLVDH 144

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA  RSA A   D ++ T R +        + + G +  + + RI     A+ ++H+
Sbjct: 145 TNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVLWTRIERWP-AMDELHA 203

Query: 205 WGFQTIGLS-SDSKKPLEQ----EIKND---KIALILGAEGKGLRPKTQETATSMAHLHM 256
            GF    L+ S++   L++     +  D   ++A++LG EG GL  +T   A  +  + M
Sbjct: 204 QGFTVAALALSENSVALDELAASPVCTDPGSQVAVVLGKEGDGLSHRTIAEADEVVRIPM 263

Query: 257 PGIIKALN 264
            G + +LN
Sbjct: 264 AGAVDSLN 271


>gi|307150993|ref|YP_003886377.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7822]
 gi|306981221|gb|ADN13102.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7822]
          Length = 264

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 120/274 (43%), Gaps = 34/274 (12%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQ 70
           I SL++    ++R+ HR          K R     +NLFL  G H +  A    S  +  
Sbjct: 2   ITSLQNPLVKQMRKLHR---------AKGRRE---QNLFLIEGTHLLETACKVKS-SLMV 48

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH--------QGLALETAPLL 122
           +  T       DW    P  + + +   Q  + IV  E +          G+    A + 
Sbjct: 49  VCCTP------DWQNRYPQLWELASQKAQRAE-IVTPEILAAMTTTVNPDGVVASAARIS 101

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +PT + +    L +VL+ + DP N+G I+R+AVA   +G+  +      ++  + ++++G
Sbjct: 102 NPT-ELISPLSLGLVLEQLQDPGNLGTIIRTAVATEVEGLWLSDDSVDVDNPKVLRASAG 160

Query: 183 ALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL-GAEGKGL 240
               +P +R+S NL   ++   S   Q I       K    EI   +  LIL G EG GL
Sbjct: 161 EWFRVP-MRVSQNLPQVIEDYKSQNVQVIATLPQGTKTY-WEIDFTRPTLILMGNEGAGL 218

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +    A    ++ + G +++LNV+ A A+ LY
Sbjct: 219 SDELISLADIGVNIPLGGGVESLNVAIATALLLY 252


>gi|167581493|ref|ZP_02374367.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis TXDOH]
          Length = 262

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 11/253 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +     L G+H  SA L+   +    ++ T  AL+  +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCVV-TDGALSHAEAR 65

Query: 85  ANLP--HPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             +    P  V T+P    D + G+ + V  G+ L        +    R S   +VLD V
Sbjct: 66  ETVARIEPARVVTLP----DALFGQLSNVVNGVGLLLLVARPASALPERVSDTSVVLDGV 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G+ILRSA A     +      + + S+ + +SA GA  H   + I    DA   
Sbjct: 122 QDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDVDAGTL 178

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +           S   + +        +A + G EG G+  + ++ AT    +  PG ++
Sbjct: 179 IERLAIPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPGGME 238

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AAAV L+
Sbjct: 239 SLNVAAAAAVCLF 251


>gi|294673532|ref|YP_003574148.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294471919|gb|ADE81308.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 246

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 23/232 (9%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E LF+   H V   L        QL AT       +W A  P    ++ V    + K+  
Sbjct: 22  EGLFIAEGHKVVGDLLKAGYTPKQLFATA------EWIAANPVAGAIE-VTNDELTKLSL 74

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--- 163
           ++   Q LAL   P+ +P        QL ++LD+V DP N+G I+R A  F  D I    
Sbjct: 75  QQHPQQVLAL--FPIPTPQHQTPSTQQLSILLDNVQDPGNLGTIIRIADWFGIDTIFCSE 132

Query: 164 -TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T   ++P    V A   S A  H+ YI    L D+L K     F   G   D +    Q
Sbjct: 133 GTVDAWNP--KVVQATMGSIARVHLIYIDTMQLLDSLPK----DFPVYGTFLDGENIYTQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAV 271
           E+    + +++G EG G+    +   T    +   H      +LNV+ A A+
Sbjct: 187 ELSQQGL-IVMGNEGNGISDAVRARVTHKLLIPDFHKGPTADSLNVAIATAI 237


>gi|255085776|ref|XP_002505319.1| predicted protein [Micromonas sp. RCC299]
 gi|226520588|gb|ACO66577.1| predicted protein [Micromonas sp. RCC299]
          Length = 513

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + LD + DP N+GA+LRSA      G++   + S   S V++K++SGALE +    + 
Sbjct: 343 VWLALDEIVDPQNLGAMLRSAHFLGVAGVVVCAKNSAPLSPVVSKASSGALERMDVRSVG 402

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLR 241
            +   LQ+    G+   G  +    P  +++    +A    +++G EG GLR
Sbjct: 403 VMPRFLQRCVEEGWDVFGADN---APDAEDVTAVSVARPSVVVVGNEGAGLR 451


>gi|156743085|ref|YP_001433214.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
           13941]
 gi|156234413|gb|ABU59196.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
           13941]
          Length = 496

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++  + +N+P N+G  LR+A A   + +I     +        ++A GA+  IP    +
Sbjct: 335 VILATEQINNPENLGMTLRTADAAGVEAVIVAGSGADPFHRECVRAARGAVGRIPIYTCA 394

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L   + +  + G   +G + + ++ L        + +I+G E +GL   T    +S+  
Sbjct: 395 DLPTWVGQARARGIHVVGATGNVERTLYDADLPLPLMIIVGNETEGLTDATLAVCSSLVR 454

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M     +LNV  AA V LY
Sbjct: 455 IPMAPGQDSLNVGVAAGVILY 475


>gi|261493233|ref|ZP_05989760.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311083|gb|EEY12259.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 237

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 11/191 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLP-HPFPVKTVPPQTIDKIVGKE 108
           +YG +   +        I +L AT     +L D  + L  H      +  + ++++ G E
Sbjct: 3   VYGENACISLFQQRPGSIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDREEMERVTGTE 62

Query: 109 AVHQG----LALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             H G    L  +TA  +L   L   +    L++LD VN+  N+G I+R+   +   GII
Sbjct: 63  --HHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGVKGII 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
           T    S + S+  A+ A G LE +  +   N   AL ++   G+Q + L+   + P   +
Sbjct: 121 TENVDSLNSSSA-ARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLTRHKQAPSLTK 179

Query: 224 IK-NDKIALIL 233
           IK  +K+  +L
Sbjct: 180 IKLAEKVVFVL 190


>gi|256421016|ref|YP_003121669.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035924|gb|ACU59468.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 197

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +VL++V DPHNI A+LR+  A     +      +        KS+S A + +  
Sbjct: 16  RQAGLTVVLENVFDPHNISAVLRTCDAVGIQDVYVLNTTTARRKRWGHKSSSSAAKWLTV 75

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            + S+    +  +        T  L++D+K   E +     +AL+ G E +G+  + ++ 
Sbjct: 76  HQFSDTATCMAVVREKYDKIYTTHLAADAKSLYELDFTG-SVALVFGNEQEGVSEEIRKL 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GIIK+LN+S A AV++Y
Sbjct: 135 CDGNFIIPQVGIIKSLNISVACAVSIY 161


>gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis]
 gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis]
          Length = 342

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 16/155 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI---- 190
           ++VL+ + DP N+G ++RSAVAF   GI          +    K++ GA   +P +    
Sbjct: 185 ILVLEGIQDPGNLGTLVRSAVAFRWGGIFLLPGCCDPFNDKALKASRGASFQVPIVSGSW 244

Query: 191 -RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-------EIKNDKIALILGAEGKGLRP 242
             +  L D  Q     G      S D + P+ +        + +  I L+LG EG+GL  
Sbjct: 245 HHLEALKDEFQMKMLAGHPA---SDDEQTPVSELSQGFADSLADIPICLVLGNEGQGLSE 301

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K+ +    +  + M    ++LNV+ A  + LY+ Q
Sbjct: 302 KSLQEC-QLVSIPMARNYESLNVAVAGGIFLYMLQ 335


>gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 254

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 56/268 (20%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q+ ++  +     + G H V  AL   S K  ++LAT+ AL+RL   A L   +      
Sbjct: 19  QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---AQLGLAY------ 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------------------MVL 138
                         +G  ++ +  ++  L + +NSQ +                   ++L
Sbjct: 69  -------------DEGKLIKISQSVASHLSSTKNSQDIFMTVKINQSEHFFFSYGKWVLL 115

Query: 139 DHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           D + DP N+G I+R+A A   DG+I    T   Y+P     + +S  G+  H+  I+ ++
Sbjct: 116 DDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK-AD 170

Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L DA+  + +        L   + K L       ++ALI+G E  G+ P+    A    +
Sbjct: 171 LPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLY 230

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + + G  ++LN + AA + +Y    HF+
Sbjct: 231 IPIKGRAESLNAAVAAGIMIY----HFS 254


>gi|270296205|ref|ZP_06202405.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273609|gb|EFA19471.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 265

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + + ++ G       L     P+     D  R ++ ++V+D V D  NIGAI
Sbjct: 78  IPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++ T+      +    + + G +  +P+  +    D L ++   GF+T 
Sbjct: 138 FRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGEL---GFRTA 194

Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            ++ +D+   ++  +     ++A+++G EG GL  +    A  +  + M   + +LN
Sbjct: 195 AMALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLN 251


>gi|293402298|ref|ZP_06646436.1| RNA 2'-O ribose methyltransferase substrate binding subfamily
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304405|gb|EFE45656.1| RNA 2'-O ribose methyltransferase substrate binding subfamily
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 242

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 14/203 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHP-----FPVKTVPPQT 100
           E   + G  +V AAL    RK+ ++L       + D D A + H        +  V  + 
Sbjct: 2   ETCIVEGNISVKAALLGKKRKVHKILVDAK---KKDKDTAFILHKAKEAQVDIAYVKREE 58

Query: 101 IDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAF 157
           ID +  GK   H G+           L+ + N +   L +++ V DP N G +LR+  A 
Sbjct: 59  IDALATGK--THGGIIAYCGQRKYQNLEELVNKKQVFLALIEGVEDPFNFGYVLRTLYAA 116

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
            CDG++   R   + + V+ ++++GA E++  I   ++ D L  +H      +       
Sbjct: 117 GCDGVLVPLRNWTTAADVVTRASAGASEYMNIIIADDMEDTLTYLHQNDITLLCAQRKDA 176

Query: 218 KPLEQEIKNDKIALILGAEGKGL 240
             L      ++I L +G E +GL
Sbjct: 177 ISLYSYTFPERICLAIGGEMRGL 199


>gi|257069324|ref|YP_003155579.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256560142|gb|ACU85989.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 295

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VL  V DP N+G ++R+A A   D ++ T+  +   S    ++A+G+L H+P +  + 
Sbjct: 146 VVVLHEVRDPGNVGTLIRTADAAGADLVLLTRTSADPYSPKAVRAATGSLFHLPVLTGAE 205

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           + D L  + + G      S  +   L       +IA I G E  GL   T + A     +
Sbjct: 206 IGDVLAALAAGGLTAAATSGHASSELFDVELPPRIAWIFGNEAHGLDRATLDAAPLRVRI 265

Query: 255 HMPGIIKALNVSNAAAVALYIT 276
            + G  ++LNV  AA V L+ T
Sbjct: 266 PLAGRAESLNVHTAATVCLFET 287


>gi|241662958|ref|YP_002981318.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12D]
 gi|240864985|gb|ACS62646.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12D]
          Length = 260

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 31/263 (11%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  +K +++ +  ++H  +     L GVH V A L+        L++ ++        
Sbjct: 7   RDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPAQCLVSERH-------- 58

Query: 85  ANLPHP---FPVKTVPPQTI----DKIVGK-EAVHQG---LALETAPL--LSPTLDAVRN 131
             + HP     +  V P T+    D + G+   V  G   +AL   P   L  T+DA   
Sbjct: 59  --IRHPEVAAVLDRVDPDTVILLADNLFGQLTTVVNGVDLMALVETPEGKLPQTIDAD-- 114

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  + 
Sbjct: 115 ---CVILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVE 171

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                    ++       +  SS +K+ +     N  +  + G EG G+  +     T+ 
Sbjct: 172 HCTFESVHSRLQ---VPLLATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTP 228

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +  PG +++LNV+ AAAV L+
Sbjct: 229 VTIPQPGGMESLNVAAAAAVCLF 251


>gi|314936683|ref|ZP_07844030.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655302|gb|EFS19047.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
           hominis C80]
          Length = 246

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 78/146 (53%), Gaps = 4/146 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  ++ +++LD + DP N+G ++R+A A   D ++  K  + +    + +++ G++ HIP
Sbjct: 101 ISKAKQVLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRASQGSVFHIP 160

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            I  + L   +++     + T   ++ S K +E +   D  AL+LG EG+G+  +     
Sbjct: 161 -IVTTELNKFIEQFDGPVYGTALENAVSYKNIESQ---DTFALLLGNEGEGVNKELLAHT 216

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           +    + + G  ++LNV+ A ++ LY
Sbjct: 217 SQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|225159254|ref|ZP_03725555.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224802151|gb|EEG20422.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 289

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 19/168 (11%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           L+  PL  P  D    +  L+V++ +  P N+G ILRSA A   D +I     +   +  
Sbjct: 118 LDAPPLSPPAADRSERAPFLLVVEAIEKPGNLGTILRSADAAGVDALIVCDPVTDLFNPN 177

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS---------SDSKKPLEQEIKN 226
           + ++++G L  +P I ++   +  + +   G +++  +         SD + PL      
Sbjct: 178 VVRASTGVLFSVPVI-VAGSGEVREWLRERGIRSVATTPSATTLHTDSDLRGPL------ 230

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A+++G+E  GL       A +   + M G   +LNV+ A  + L+
Sbjct: 231 ---AIVMGSEQYGLSDYWLAEADARVRIPMAGQADSLNVAMATIITLF 275


>gi|311745086|ref|ZP_07718871.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
 gi|126577599|gb|EAZ81819.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
          Length = 179

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 3/149 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  S L++VLD++   +N+G+  R+  AF  + I+            + K+A GA E + 
Sbjct: 20  IEKSPLVLVLDNIRSLNNVGSAFRTGDAFRVEKIMLCGITGTPPHRDIQKTALGATESVE 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQ 245
           +       DAL+++   G+    L    +    QE + D   KIAL+ G E  G+  +  
Sbjct: 80  WEHYPQTVDALKELKKQGYTLCALEQVDQSIFLQEYQPDPKEKIALVFGNEVFGVEDEVL 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E    +  +   G   +LN+S    ++++
Sbjct: 140 ELCDHVLEIPQLGTKHSLNISVTLGISVW 168


>gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
 gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
          Length = 183

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ RS  AF  + +      +      + K+A G  + + +    
Sbjct: 25  LIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHPEIHKTALGGEDSVEWKYFK 84

Query: 194 NLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQ 245
           N  DA+ ++H  G+    +     S   + LE +I+    +   A+I+G E KG++ +  
Sbjct: 85  NTEDAVNELHKKGYYVYSIEQVEGSTKLQNLEVDIRQHNTDQHYAMIMGNEVKGVKQQVV 144

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + +     +   G   +LNVS  A + ++     FAK
Sbjct: 145 DMSDGCLEIPQFGTKHSLNVSTTAGIVIW----EFAK 177


>gi|218263084|ref|ZP_03477322.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222958|gb|EEC95608.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
           DSM 18315]
          Length = 256

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 10/147 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +S L++ LD + DP N+G I+R A  F  + I+ +   +   S    ++  GAL H+  +
Sbjct: 100 SSSLVLALDGIQDPGNLGTIIRLADWFGIEHIVCSPDTADVFSPKTVQATMGALAHVK-V 158

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             + L D L+   +      G   D +    +E+  + I +++G EG G+RP+ +E    
Sbjct: 159 HYTELEDYLKAQVARQIPLFGTFLDGENMYTKELSANGI-IVMGNEGNGIRPQIEELIDQ 217

Query: 251 MAHLHMPGI------IKALNVSNAAAV 271
              L++P         ++LNV+ A AV
Sbjct: 218 --KLYIPSFPPERETSESLNVAIATAV 242


>gi|148273189|ref|YP_001222750.1| putative rRNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831119|emb|CAN02071.1| putaive rRNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 266

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 24/256 (9%)

Query: 41  RHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNAL------ARLDWDANLPHPFPV 93
           R       LFL  G   VS AL      + +L AT  AL      AR   +A +   F  
Sbjct: 19  RDARADTGLFLLEGPQAVSEALAFRPDLVLELFATPTALDRYPDLARAVREAGVEVEFVT 78

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           + V     D +  +  V  G+  +    L   L    + +L+ +L+ V DP N G I+R+
Sbjct: 79  EDVIASMADTVTPQGVV--GVCRQFPTSLKQILG--DDPRLIAILEEVRDPGNAGTIIRA 134

Query: 154 AVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           A A   D +I T R    Y+P     + ++ +G+L H+P   +  L   L+++ + G Q 
Sbjct: 135 ADAAGADAVILTGRSVDLYNPK----VVRATTGSLFHLPVAIMPELDAVLERVKAAGLQV 190

Query: 210 IGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +         L +          A + G E +GL+ +    A     + + G  +++N++
Sbjct: 191 LAADVKGDDLLAERTSGGLAWPTAWLFGNEARGLQDEHLALADRAVVVPIYGQAESMNLA 250

Query: 267 NAAAVALYITQNHFAK 282
            AA+V LY  ++ FA+
Sbjct: 251 TAASVCLY--ESAFAQ 264


>gi|104774335|ref|YP_619315.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423416|emb|CAI98289.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 260

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 14/151 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++LD + DP N+G I+R+A A   DG+I    T   Y+P     + +S  G+  H+  I+
Sbjct: 119 VLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK 174

Query: 192 ISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++L DA+  + +        L   + K L       ++ALI+G E  G+ P+ +  A  
Sbjct: 175 -ADLPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADE 233

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             ++ + G  ++LN + AA + +Y    HF+
Sbjct: 234 KLYIPIKGRAESLNAAVAAGIMIY----HFS 260


>gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
 gi|167663817|gb|EDS07947.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
          Length = 263

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 67/140 (47%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VL+ + DP N+G ILR+A      GI+  +      +    +S  G++  +P+    +
Sbjct: 115 LIVLNRLQDPGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIRSTMGSIYRMPFYYSQD 174

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   + ++   G        + ++  ++       A ++G EG GL  +  + A +   +
Sbjct: 175 LKKDIGRLKDKGICIYAAHLNGRQDYDEADYTKPCAFLIGNEGNGLDEEIAQQADTYIKI 234

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN + A++V ++
Sbjct: 235 PMKGRVESLNAAIASSVLMF 254


>gi|193078079|gb|ABO13014.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 258

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 21/231 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           L G H   A L    +K+F L  T+ AL          HP   K +        +  E +
Sbjct: 35  LEGTHLCLAWLQQ-QKKLFSLFTTEQALE---------HPDLKKIIELHQGHVFIISEVL 84

Query: 111 HQGLAL--ETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           ++ L+    T P L       T   +  S   ++L++V DP N+G +LRSA A +   II
Sbjct: 85  YKDLSTLGNTLPCLGIIDLPKTASTIDYSVDTLILENVQDPGNVGTLLRSAAAANIKQII 144

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+  +   S  + ++  GA   +       LTD L K     F T   SS     L  +
Sbjct: 145 CTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSK 201

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     ILG EG+G      E A S+  +  PG  ++LNV+ A ++  +
Sbjct: 202 DLSKPCVWILGNEGQGASDYALEHAQSVT-IPQPGGQESLNVAIAGSICFF 251


>gi|160892176|ref|ZP_02073179.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
 gi|156858654|gb|EDO52085.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
          Length = 265

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV T   + + ++ G       L     P+     D  R ++ ++V+D V D  NIGAI
Sbjct: 78  IPVYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGAI 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RSA A   D ++ T+      +    + + G +  +P+  +    D L ++   GF+T 
Sbjct: 138 FRSAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGEL---GFRTA 194

Query: 211 GLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            ++ +D+   ++  +     ++A+++G EG GL  +    A  +  + M   + +LN
Sbjct: 195 AMALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLN 251


>gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
          Length = 282

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   + ++ T      Y+P       +++ G+L H+P
Sbjct: 119 KLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKA----VRASVGSLFHLP 174

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  +   G + +      +  L+ E+    +    A + G E  GL  +T
Sbjct: 175 VAVGVPVERAVAGLREAGVRVLAADGAGEDDLDTELDAGTMGGPTAWVFGNEAWGLPEET 234

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    ++  + + G  ++LN++ AAAV LY
Sbjct: 235 RALTDAVLRVPIHGKAESLNLATAAAVCLY 264


>gi|114706914|ref|ZP_01439813.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
 gi|114537464|gb|EAU40589.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
          Length = 282

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 111/251 (44%), Gaps = 14/251 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLP 88
           Y+ ++  +   RH    E   +     +S     PS     +L  +N L+ + D  ++LP
Sbjct: 27  YRDIRERDLTGRHGFIAEGTVVLDQLALSERFR-PS----SVLVLRNRLSSIADRLSHLP 81

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPT--LD-AVRNSQLLMVLDHVN 142
              P+       ID+I G   +H+G+    ++T P  S T  LD A+     +++   + 
Sbjct: 82  ADCPIYVSERAVIDQIAGFP-MHRGVLAHGIDTQPERSVTEVLDNAMAGYGPVLIAIGIA 140

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +  NIGA+ R+A AF   G++              + + G +    + R  N  D +   
Sbjct: 141 NHDNIGALFRNARAFGVGGVLLDDTSCNPLYRKALRVSVGTVLTADWCRSGNADDLIAAA 200

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            + G++ I L+   +  L+     +++AL++GAEG GL P+          + M   + +
Sbjct: 201 EAAGYRPIALTPKGEHSLDDLEPTERLALVVGAEGPGL-PENILDRLHGLRIAMESDVDS 259

Query: 263 LNVSNAAAVAL 273
           LNV+  AA+ L
Sbjct: 260 LNVATTAAIVL 270


>gi|228476265|ref|ZP_04060967.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
 gi|228269668|gb|EEK11170.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
          Length = 246

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 81/156 (51%), Gaps = 5/156 (3%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           A +  P  D  +  Q+L+ LD + DP N+G ++R+A A   D ++  K  + +    + +
Sbjct: 92  AVIEKPKHDISKAKQVLL-LDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMR 150

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ G++ HIP I  + L   +++     + T   ++ S K +E +   D  AL+LG EG+
Sbjct: 151 ASQGSVFHIP-IVTTELNKFIEQFDGPVYGTALENAVSYKNIESQ---DIFALLLGNEGE 206

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+  +     +    + + G  ++LNV+ A ++ LY
Sbjct: 207 GVNKELLAHTSQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 257

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 14/176 (7%)

Query: 108 EAVHQGLALETAPLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           E V + L++   P  SP L  V+        N  +L+ LD++ DP N+G ILR+  AF+ 
Sbjct: 83  ENVIKKLSVNIDP--SPILAIVKMKEETCDVNDNVLL-LDNIQDPGNLGTILRTCFAFNV 139

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I         +  + K++ GA+  I ++R ++    L+ +    F  I    D    
Sbjct: 140 KQVIFNNCVDLYNAKTI-KASMGAIFKINFLRFNSSKLTLEFLLKNNFYLIATILDKNAI 198

Query: 220 LEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              E+K   K  L++G EG GL     + A+    + M    ++LNV+ A A+ LY
Sbjct: 199 SLNELKIKQKYCLMVGNEGHGLSQNFIDYASIKTMIKMNQ-TESLNVAVATAIFLY 253


>gi|293192348|ref|ZP_06609459.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
           F0309]
 gi|292820263|gb|EFF79257.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
           F0309]
          Length = 246

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 10/156 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           + ++VL    DP N+G I+R+A AF   G++       + S  + +S++G++ HIP   +
Sbjct: 85  ETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHIPVCVV 144

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----------ALILGAEGKGLRP 242
            +  DA   +H      +G S  +      ++    +          A + G E +GL  
Sbjct: 145 PSFADARALIHGRSAALLGTSGGAASISLSDLLVQGVSARSRLSQSHAWVFGNEARGLSG 204

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   +  + M G  ++LNV++AAA  L+ +Q 
Sbjct: 205 DEMRLCDGLVSIPMTGDAESLNVASAAATCLFASQT 240


>gi|229496035|ref|ZP_04389759.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317127|gb|EEN83036.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 182

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD+V   +N+G++ R+A AF  +G+I           ++ K+A GA   + +    
Sbjct: 25  LTLVLDNVRSLNNVGSLFRTADAFRLEGLILCGITGLPPHPMIHKTALGAELSVAWEHAE 84

Query: 194 NLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250
           +  +A++++ S G++   L  ++DS  P E  +   +++AL++G E  G+          
Sbjct: 85  STLEAVEQLRSKGYKIWALEQATDSLCPEESPLTPPERVALVVGNEVHGVADDVIACVDR 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS +A +A+Y
Sbjct: 145 CIEIPQYGTKHSLNVSVSAGIAIY 168


>gi|284991463|ref|YP_003410017.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284064708|gb|ADB75646.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 261

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 11/258 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             R  + + +     R       LFL  G   V+ AL +P+  + ++LAT+ A A    D
Sbjct: 5   TERSARVVAARKLTRRAGRDAAGLFLAEGRQAVAEALADPA-GVREVLATEAAAA-AHRD 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVN 142
                P PV+ V  +    +  +    QGL    A    PT D + ++   L + L  + 
Sbjct: 63  LLAAAPVPVRLVTDKAAAAL-SETVTPQGLVAVCALRDVPT-DVLVDAPPSLTVALAELA 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N G +LR+A A     ++     +        +S++G+L H+  +R + L + L ++
Sbjct: 121 DPGNAGTVLRTADACGAGAVVFGAGSADPYGGKAVRSSAGSLFHVDVVRGAPLPELLPRL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            + G   +      +  L++   E+    +  + G E +G+       A +   + M G 
Sbjct: 181 RAAGVTVLAADGGGEAALDELGPELAG-PVLWLFGNEARGVPAALAALADARVRIPMRGR 239

Query: 260 IKALNVSNAAAVALYITQ 277
            ++LN++ AAA+ LY TQ
Sbjct: 240 AESLNLAAAAAICLYTTQ 257


>gi|227497644|ref|ZP_03927862.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226832915|gb|EEH65298.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 306

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 116/261 (44%), Gaps = 21/261 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           ++ +  ++S  T   E   + G   V  A+++    I  L AT++A AR     +     
Sbjct: 25  RVAALARRSTRTKY-ERFLVEGPQGVREAVHHACGDILDLYATQDASARYPEILSEARAA 83

Query: 92  PVKT--VPP----------QTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMV 137
            V T  V P          Q +  +V  +AV +  A     AP ++     + +++L+ V
Sbjct: 84  GVYTHLVTPAVMAAMSADAQGLLAVVRTQAVARPSAAGGSRAPQVAELKQVLDSARLVAV 143

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L    DP N G I+R+A A   D ++  +      +  + +S +G+L H+P +    L +
Sbjct: 144 LTQAQDPGNAGTIIRAADAAGADAVVLARGSVDPTNPKVVRSTAGSLFHLPVLWGLGLEE 203

Query: 198 ALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
             Q +H  G     L++D +  L     + +     A  LG E  GL P++   A ++  
Sbjct: 204 ISQAVHGAGLAI--LAADGRGELNLFESETLLARPTAWWLGNEAHGLSPESLTQADAVVS 261

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G  ++LNV+ AAAV  Y
Sbjct: 262 IPLYGQAESLNVATAAAVCFY 282


>gi|193214688|ref|YP_001995887.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088165|gb|ACF13440.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 219

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 37/168 (22%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186
           R   L +V+++VN  HN+ AI+R+     CD +   K ++ +   E      SASGA   
Sbjct: 19  RQPDLTVVMENVNKAHNLAAIIRT-----CDAVGIPKVHAVALRPEIRTKQNSASGANRW 73

Query: 187 IPYIRISNLT-DALQKMHSWGFQ----------TIGLSSDSKKPLEQEIKNDKIALILGA 235
           +  ++I N T D    +   GFQ          T   + D  KP          AL++GA
Sbjct: 74  VD-VQIHNSTEDVFSTLRQGGFQIFVAHFSPQATDFRAVDFTKP---------TALVVGA 123

Query: 236 EGKGLRPKTQETATSMA----HLHMPGIIKALNVSNAAAVALYITQNH 279
           E +G+     ETA S+A    ++ M G++++LNVS A A+ L+  Q  
Sbjct: 124 EWEGI----SETAISLADGSLYVPMVGMVESLNVSVATAIMLFEAQRQ 167


>gi|317057706|ref|YP_004106173.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315449975|gb|ADU23539.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 271

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 2/174 (1%)

Query: 102 DKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           DKI   ++  QG+ +    L  P T D ++     +VLD + DP N+G ++R++ A   D
Sbjct: 92  DKISDTDSC-QGIFVVAKMLDKPFTEDKLKKGGKYLVLDELQDPGNLGTMIRTSDAVGLD 150

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+ T       +    +SA G++  +      +    ++        T     +    +
Sbjct: 151 GIVLTGNCVDLYNPKTVRSAVGSMPRVDIFVEKDFERVIEAFRLKDIPTAAAVINGGTEI 210

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q   +   A+++G EG+GL     E  +    + M G I +LN + AA + L+
Sbjct: 211 RQYDFSKGCAVVIGNEGRGLMHDHAEMCSHKVTIAMHGHIDSLNAATAATIFLW 264


>gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 264

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 24/187 (12%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +T+ PQ I  IV K+ ++    + +        D++R    L++L+ + DP N+G ++R+
Sbjct: 87  ETITPQGILAIV-KQPIYTLKDMTSG-------DSIR----LLLLEDIRDPGNLGTMVRT 134

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A      GI+ +K      +  + +S  GA+  +P+    +    L ++ +   + I + 
Sbjct: 135 AEGVGMTGIVLSKDSVDMFNPKVIRSTMGAIFRVPFFYAEDFYACLNQIKN---EEIAIY 191

Query: 214 SDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +     L+  +  DK+      A+++G E  GL  K    +T    + M G +++LN + 
Sbjct: 192 A---AHLQGAVWYDKVSYQGKSAILIGNEANGLSDKATSLSTQRIKIPMEGNVESLNAAI 248

Query: 268 AAAVALY 274
           AAAV +Y
Sbjct: 249 AAAVLMY 255


>gi|154509022|ref|ZP_02044664.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798656|gb|EDN81076.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
           17982]
          Length = 246

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 10/156 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           + ++VL    DP N+G I+R+A AF   G++       + S  + +S++G++ HIP   +
Sbjct: 85  ETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAVAGTVDAASPKVVRSSAGSVFHIPVCVV 144

Query: 193 SNLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIKNDKI------ALILGAEGKGLRP 242
            +  DA   +H      +G S    S S   L  ++ + +       A + G E +GL  
Sbjct: 145 PSFADARALIHGRSAALLGTSGGAASISLSDLLVQVVSARSRLSQSHAWVFGNEARGLSG 204

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   +  + M G  ++LNV++AAA  L+ +Q 
Sbjct: 205 DEMRLCDGLVSIPMTGDAESLNVASAAATCLFASQT 240


>gi|294142851|ref|YP_003558829.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
           DSS12]
 gi|32562924|dbj|BAC79237.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea]
 gi|293329320|dbj|BAJ04051.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
           DSS12]
          Length = 232

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188
           R   L + LD V+  +NI A++R+A A    GI       P  E  V   +ASG+ + + 
Sbjct: 16  RQPDLTLCLDRVHKTNNIAAVIRTADAV---GIHQVHAVWPDIEMRVSGNTASGSQQWVK 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
            I+  ++ DA+Q   +   Q +  +  +     +EI   +   +ILG E  G+ P+    
Sbjct: 73  TIKHYHMDDAVQAFRAQDMQILATNFSADAVDFREIDYTRPTVIILGNEHDGVSPEGIAA 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A     + M G++++LNVS A+A+ +Y  Q
Sbjct: 133 ADQHIIIPMIGMVQSLNVSVASALIMYEAQ 162


>gi|255078650|ref|XP_002502905.1| predicted protein [Micromonas sp. RCC299]
 gi|226518171|gb|ACO64163.1| predicted protein [Micromonas sp. RCC299]
          Length = 234

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 88/178 (49%), Gaps = 12/178 (6%)

Query: 106 GKEAVHQGLALETAPLLSPT----LDAV---RNSQLLMVLDHVNDPHNIGAILRS--AVA 156
           GKE   +GL     P +S      LDAV   R+  L+ +L+ V D  N+ A+ RS  A+ 
Sbjct: 12  GKECTTEGLTRAFEPQVSEERIARLDAVVQQRSFDLMPILEGVYDIGNVLAVCRSTEALG 71

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I+    +  +S    +++ GA++     +  +  +A++++ + G++ +    + 
Sbjct: 72  IGSLGVISDAGLAFKQSG---RTSGGAVKWTNLEQWRSTEEAIREVKARGYRVLTTVFEG 128

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             PLE        A+ILG E  G+  + +  A    ++ M G  ++LNVS A+++ ++
Sbjct: 129 GHPLEHYDWTVPTAVILGNERDGVSDEAKRLADGGVYISMNGFTESLNVSVASSMIMH 186


>gi|145634580|ref|ZP_01790289.1| rRNA methylase [Haemophilus influenzae PittAA]
 gi|145268125|gb|EDK08120.1| rRNA methylase [Haemophilus influenzae PittAA]
          Length = 185

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 6/128 (4%)

Query: 111 HQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           H G+ L      A  L   LD  RN   L++LD+VN+  NIG +LR+   F    I+   
Sbjct: 15  HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVADN 74

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIK 225
             +   +A + + A G  E+I  +    +  AL ++   G+Q I +S + +  PL++   
Sbjct: 75  VENLYSAASM-RVAEGGAEYIRVLETDYIDSALMQLRKSGYQVIHVSHNKQGDPLDKVRL 133

Query: 226 NDKIALIL 233
            +K+  +L
Sbjct: 134 KNKVVFVL 141


>gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 269

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 13/147 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           LL+VL+ +  P N+GAILRSA     D II T      Y+P+      +S+ G +  +P 
Sbjct: 121 LLLVLEGIEKPGNLGAILRSADGAGADAIILTDCILDLYNPN----AIRSSQGLIFALPI 176

Query: 190 IRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +      L D LQK     +QT+  +  + +   +       AL  G+E  GL       
Sbjct: 177 VNADREALADWLQKGR---YQTVAATPHTDQSHWEIDYTKPTALFFGSESDGLSDYWMNH 233

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + M G   +LNV+ AAAV LY
Sbjct: 234 LDQRICIPMKGRADSLNVAAAAAVCLY 260


>gi|269837199|ref|YP_003319427.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
           20745]
 gi|269786462|gb|ACZ38605.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
           20745]
          Length = 293

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           + A   + L ++ D + DP N+G +LR+A+     G+  T   +   +  + ++  GA  
Sbjct: 121 IGAGATAPLFLIADGIRDPGNLGTLLRAALGAGAHGVYVTAGTTDPFAPKVVRAGMGAHF 180

Query: 186 HIPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +P   I+ L       H  G  T I  + D++   +         +I+G+E +GL P  
Sbjct: 181 RLP---IAYLDWRAPAPHIAGIATRIAATGDAETVYDAIDWTAPACVIIGSEAEGLSPAA 237

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +E AT  A + + G +++LN + A  V L+
Sbjct: 238 REFATGTARIPLAGGLESLNAAMAGTVILF 267


>gi|293364011|ref|ZP_06610747.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
 gi|292552501|gb|EFF41275.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
          Length = 201

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 12/143 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPYIRI 192
           ++ LD++ DP N+G I+R + +F  D +I      YSP       +S  GA+ +   I +
Sbjct: 61  VVFLDNLQDPGNVGTIIRLSKSFDIDTLIVKNFDIYSPK----CLRSTQGAIFNQNIILV 116

Query: 193 SNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +N  D L+++   GF+  T  L+ +S + L     N K  +I G EG G+  +      S
Sbjct: 117 NN-NDLLKELQHSGFEIVTTVLNQESIE-LNNFNFNKKTVVIFGNEGSGIEKEI--INNS 172

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
              +++P   ++LNV+  AA+ L
Sbjct: 173 NKKIYIPISFESLNVATCAAIVL 195


>gi|188025415|ref|ZP_02958530.2| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
 gi|188023696|gb|EDU61736.1| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
          Length = 226

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 7/155 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A+R   L + L+ V+ PHN+ AI+RSA A    GI T     P +   L+  SA+G+   
Sbjct: 3   AMRQPDLTICLEEVHKPHNVSAIVRSADAV---GIHTIHAIWPDQQVKLSVSSAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDK-IALILGAEGKGLRPKT 244
           +  I   +   A+ ++ S   Q + ++  S++ ++ +EI   +   +++G E KG+  K 
Sbjct: 60  VNVISHPSTEAAISQLKSQNMQVL-VTHLSEQAVDFREIDYTQPTCIMVGQEKKGISAKA 118

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 119 LELADKHIIIPMVGMVQSLNVSVASALILYEAQRQ 153


>gi|301169124|emb|CBW28721.1| predicted methyltransferase [Haemophilus influenzae 10810]
          Length = 351

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 13/199 (6%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQ 99
           ++ E + +YG +   A     +  I +L AT     +    L + A     + V  V  +
Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHV--VDSE 170

Query: 100 TIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + ++ G E  H G+ L      A  L   LD  RN   L++LD+VN+  NIG +LR+  
Sbjct: 171 ELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCA 229

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSS 214
            F    I+     +    A + + A G  E+I  +   ++  AL  +   G+Q I  L +
Sbjct: 230 YFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVLHN 288

Query: 215 DSKKPLEQEIKNDKIALIL 233
               PL++    +K+  +L
Sbjct: 289 KQGDPLDKVRLKNKVVFVL 307


>gi|255013118|ref|ZP_05285244.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|298373994|ref|ZP_06983952.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
 gi|301311793|ref|ZP_07217718.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
 gi|298268362|gb|EFI10017.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
 gi|300830353|gb|EFK60998.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
          Length = 176

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLDHV   +N+G++ R++ AF  + I      +   +A + K+A GA E + +    
Sbjct: 25  LIVVLDHVRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHKTALGAEETVDWEYFK 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250
           +  +A+ K+   G+    +       +   ++ DK    A+++G E KG++    +    
Sbjct: 85  DTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKYAIVMGNEVKGVQQNVVDNCDI 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|256394616|ref|YP_003116180.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256360842|gb|ACU74339.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 272

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGA 183
           A R  +L+ +L HV DP N G ++R A A   D +I T      Y+P       ++++G+
Sbjct: 115 AARAPKLVALLAHVRDPGNAGTVIRCADAAGADLVIVTSESVDVYNPKA----VRASAGS 170

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKG 239
           L H+P     +  +A+  + +   + +         L+ E+   ++A     + G E  G
Sbjct: 171 LFHVPVAVGVSAQEAVDMLRAAELRVLAADGGGAADLDDELDAGRLAAPTCWMFGNEAWG 230

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L       A     + + G  ++LN++ AAAV LY
Sbjct: 231 LPEALLALADEAVRVPIHGRAESLNLATAAAVCLY 265


>gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
 gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
          Length = 176

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++LD++   +N+G++ R+A AF  + I      S    A + K+A GA E + +  I 
Sbjct: 26  FIVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTALGAEESVDWEYIE 85

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           +    + ++   G+    +       +  E+   KN KIA+++G E KG++ +    +  
Sbjct: 86  DTVHIVDRLKEEGYTVFSIEQAEGSTMLNELELQKNQKIAIVMGNEVKGVQQEVINHSNG 145

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   ++NVS    + ++
Sbjct: 146 CIEIPQYGTKHSMNVSVTTGIVIW 169


>gi|257467228|ref|ZP_05631539.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918357|ref|ZP_07914597.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692232|gb|EFS29067.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 257

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+++ L++LD + DP N+G I+R   A     II TK      +  + +S+ G++ H+  
Sbjct: 103 RDARQLIILDDIQDPGNLGTIIRLVDASGFSDIILTKNSVDYYNEKVVRSSMGSIFHVNL 162

Query: 190 --IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +    + D L+K   +      L  DS   +E  + +++ A + G EG G+  +  + 
Sbjct: 163 HTMEKIEIVDYLKK-QQYNIVVTSLQEDSIPYMEMSL-DERNAFVFGNEGHGVSKEFLDI 220

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A     + + G  ++LNV+ A  + L+ +++
Sbjct: 221 ADEKVIIPISGQAESLNVAMALGILLFYSRD 251


>gi|227548138|ref|ZP_03978187.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079800|gb|EEI17763.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 273

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V    NDP N G ++R A     D ++        ES+   ++++G+L H+P  R 
Sbjct: 118 RLVAVCVETNDPGNAGTLIRIADVCGADAVVFAGDTVDPESSKAVRASAGSLFHVPVARE 177

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
            N++D + ++ + G      +      L+   E+     A + G E  GL  +  + A  
Sbjct: 178 RNISDVMGQLKAAGLSIAATTMGGDVSLDDAAEVVAQPTAWLFGNEAHGLPQELIDAADH 237

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + + G  ++LN++ AAA+ ++
Sbjct: 238 RVSIPIRGHAESLNLATAAAMCMW 261


>gi|158334661|ref|YP_001515833.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304902|gb|ABW26519.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 261

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 24/220 (10%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K+M+   Q+ +H  Q   L L G H + +A        F+++   +      W A  P  
Sbjct: 11  KQMRKL-QQVKHRRQQGKLLLEGTHLLQSAWEQ--NWSFEIVCYTDR-----WQAKYPQI 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----------SPTLDAVRNSQLLMVLDH 140
           +       Q  D+    E V   +   TA  +           P   ++    L + L+ 
Sbjct: 63  WQ------QIQDRTTRLERVSPEVLQATATTVHPDGVVAVISRPATPSLPIQTLGLALET 116

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G ++R++VA   +G++  ++ +  ES  + ++++GA  H+P          LQ
Sbjct: 117 IQDPGNLGTLIRTSVATQVEGLLLNQQCADLESPKVLRASAGAWFHLPQRATDKFVTVLQ 176

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
                G Q I    D+     Q        +++G EG GL
Sbjct: 177 TYKQQGMQLIATVPDASHTFWQVDYRQPTLILIGNEGAGL 216


>gi|72383592|ref|YP_292947.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str.
           NATL2A]
 gi|72003442|gb|AAZ59244.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
           str. NATL2A]
          Length = 229

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 33/161 (20%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEH 186
           R S L +++++V  PHN+ AI+RS     CD +   + Y+     +      +A G+ + 
Sbjct: 18  RISDLTVLIENVEKPHNLSAIIRS-----CDAVGVLEAYAIFNKEKFLTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS----------SDSKKPLEQEIKNDKIALILGAE 236
           +   +    T+A++ +   GF+  G +           D K P          A +LGAE
Sbjct: 73  VKINQYKKTTEAIKVLKEKGFKLYGTNLNPRSIDYRKCDFKGP---------TAFVLGAE 123

Query: 237 GKGLRPKTQETATSM-AHLHMP--GIIKALNVSNAAAVALY 274
             G+   ++E ++ M  H+H+P  G++++LNVS AA+  L+
Sbjct: 124 KWGI---SEEASSLMDEHIHIPMRGMVESLNVSVAASALLF 161


>gi|302756691|ref|XP_002961769.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
 gi|300170428|gb|EFJ37029.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
          Length = 321

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 19/163 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASG------A 183
           N   L++LD + DP N+G +LR+A AF+ DG+ +      P     L  S +       A
Sbjct: 160 NPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTLRASRAANFRMPIA 219

Query: 184 LEHIPYIRISNLTDAL-------QKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGA 235
               P I+     +A+       +++HS    +     +S + L ++IK+ K + L+LG+
Sbjct: 220 AGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHS---KKNSPEALIEKIKSVKSLCLVLGS 276

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           EG+GL    +  +  +  + MPG  ++LNV+    + +++  N
Sbjct: 277 EGQGLSDPARRGSQHLT-VPMPGKFESLNVAVVGGILMFLLMN 318


>gi|300173701|ref|YP_003772867.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888080|emb|CBL92048.1| Putative trmH family tRNA/rRNA methyltransferase TRMHL [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 257

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDP 144
           ++PH  P   +  +    I G     QG+  E + L   T D +  +    ++LD + DP
Sbjct: 64  DVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEIS-LPDKTFDPSYVHDGAWLLLDKIQDP 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDAL--Q 200
            N+G ++R+A A    G++  +  + + S  + ++  G+  H+  +   +   TDAL   
Sbjct: 122 GNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAMQGSQFHLEVLTGDLVEWTDALTAN 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +  +G Q +  S+ S + +E    + + ALI+G EG+G+  +     T+  ++ + G  
Sbjct: 182 NLSVYGSQ-LNESARSYREIE---SSTQFALIVGNEGQGMSDELAAKTTANLYIPIQGQA 237

Query: 261 KALNVSNAAAVALY 274
           ++LNV+ A  + ++
Sbjct: 238 ESLNVAIAGGILMF 251


>gi|87125512|ref|ZP_01081357.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
 gi|86166812|gb|EAQ68074.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
          Length = 277

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 16/163 (9%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++  ++ LD V DP N+G +LR+A+A   + ++      P    V+ +S+SGA+  +   
Sbjct: 109 HTSFVLALDRVQDPGNLGTLLRTALAADVELVLLASGADPLSPKVV-RSSSGAVLTLAQE 167

Query: 191 R--------ISNLTDALQKMHSWGFQTIG-LSSDSKKPLE----QEIKNDK-IALILGAE 236
           R        +  L + LQ +   G Q +  L  D+  P+E     E+   +  AL+LG E
Sbjct: 168 RLGPEERQGVRALAERLQDLRCDGLQVVATLVPDASAPVEVLPYWELDWTRPTALVLGNE 227

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G GL P+     +    L     +++LNV+ AAAV L + +  
Sbjct: 228 GSGLHPELLACCSHGVTLPHSPRVESLNVA-AAAVPLLLERRR 269


>gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
          Length = 231

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYS-PSESAVLAKSASGALEH 186
           R   L +VL+ V+ PHN+ AILR     +CD  G++     S P       K+A G+ + 
Sbjct: 18  RMGDLTVVLEAVDKPHNLSAILR-----TCDAVGVLEAHVVSLPGRPRTFNKTAKGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P     ++   L  +   GF+  G  LS D++   + +        ++GAE  G+  + 
Sbjct: 73  VPLHPHPSIETCLNGLKEKGFRIYGTHLSVDARDYRDCDFTGPS-CFLMGAEKWGMSDEA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS AAA  L+
Sbjct: 132 LAMVDQPLFIPMTGMVQSLNVSVAAATLLF 161


>gi|238854475|ref|ZP_04644814.1| rRNA methylase [Lactobacillus jensenii 269-3]
 gi|260665477|ref|ZP_05866324.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282934545|ref|ZP_06339797.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|313471838|ref|ZP_07812330.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|238832902|gb|EEQ25200.1| rRNA methylase [Lactobacillus jensenii 269-3]
 gi|239529248|gb|EEQ68249.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|260560745|gb|EEX26722.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281301383|gb|EFA93675.1| rRNA methylase [Lactobacillus jensenii 208-1]
          Length = 255

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + DP NIG I+R+A A   +G++ ++  +   +    ++  G+  H+P I+   L
Sbjct: 114 ILLDSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHLPIIKADLL 173

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q   ++      +  D  K L    K  ++ALI+G E  G+  +    A     + 
Sbjct: 174 KTIEQFKENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANGVSDEAVNLADEKLFIP 233

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           + G  ++LN + AA + +Y    HFA
Sbjct: 234 IKGQAESLNAAIAAGIMIY----HFA 255


>gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 254

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 114/274 (41%), Gaps = 68/274 (24%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q+ ++  +     + G H V  AL   S K  ++LAT+ AL+RL                
Sbjct: 19  QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---------------- 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPT------LDAVRNSQLL---------------- 135
                          GLA + + L+  +      L + +NSQ +                
Sbjct: 62  ------------AQLGLAYDESKLIKISQSVASHLSSTKNSQDIFMTVKINQSEHFAFSY 109

Query: 136 ---MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP 188
              ++LD + DP N+G I+R+A A   DG+I    T   Y+P     + +S  G+  H+ 
Sbjct: 110 GKWVLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLN 165

Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            I+ ++L DA+  + +        L   + K L       ++ALI+G E  G+ P+    
Sbjct: 166 LIK-ADLPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAAL 224

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A    ++ + G  ++LN + AA + +Y    HF+
Sbjct: 225 ADEKLYIPIKGRAESLNAAVAAGIMIY----HFS 254


>gi|196006305|ref|XP_002113019.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
 gi|190585060|gb|EDV25129.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
          Length = 246

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 9/197 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGA 149
           P+K       +    KE + +     T   L    +AV+N    + +VL+ + +  N  A
Sbjct: 25  PIKEFGTLANNASYNKELLQKLTCAFTKERLDKMTNAVKNRTRSIAVVLEGITNEGNEQA 84

Query: 150 ILRSAVAFSCDGIITTKRY-SP-SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           I R+  A    G  T  R  SP        ++ +GA++ I      +  + + ++ S G+
Sbjct: 85  IYRTMDAL---GFQTAHRIPSPLYRLKTCGRTDAGAMKWIDIESWKSTEECISQLKSCGY 141

Query: 208 QTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           + +  SS++K K L+    ++K A++LG+E +G+  +      ++  + M G +++ NVS
Sbjct: 142 KILATSSENKTKTLDSFDFSNKTAVVLGSEQEGISKEAMNLVDNVFRISMVGFVESYNVS 201

Query: 267 NAAAVALY-ITQNHFAK 282
            AAA+ LY I Q+   K
Sbjct: 202 VAAAIILYHIYQDRIRK 218


>gi|163802263|ref|ZP_02196158.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
 gi|159174068|gb|EDP58878.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
          Length = 227

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P +   LA +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLAHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ S G Q +  + SD+             A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIDTAISELKSQGMQVLVTNLSDTAVDFRDIDYTKPTAIILGSEKVGASDRAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163


>gi|332969175|gb|EGK08207.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 302

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHIPYIRIS 193
           +VL+ + D  N+GA+LRSA A     II +   + + +  + ++  GA  L HI + R+ 
Sbjct: 157 VVLERIQDAGNVGAVLRSAAAAGIVHIILSDGCADAYAPKVLRAGMGAHFLLHI-HERV- 214

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +LT    + H     T  LS  +   L         A I G EG G+ P+ Q  AT+   
Sbjct: 215 DLTQWRSQYHDRVLVT-ALSEHNNFSLYDLTLQQPSAWIFGNEGSGVSPQIQNIATANVK 273

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LN++ AA V L+
Sbjct: 274 IPMLGATESLNIAQAATVCLF 294


>gi|225026975|ref|ZP_03716167.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
 gi|224955711|gb|EEG36920.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
          Length = 257

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 2/159 (1%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T P +   L   +N    + L+++ DP N+G I+R+A      GII  +      +  + 
Sbjct: 94  TEPSIEELLHKEKNPCFFL-LENLQDPGNLGTIVRTAEGAGVTGIIMNRETVDIYNPKVI 152

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  GA+  +P++   +L + + ++   G              +Q+ + D  A ++G EG
Sbjct: 153 RSTMGAIFRVPFVIADSLPEVIFQLKQNGVSVYAGHLKGDVFYKQDYR-DGSAFLIGNEG 211

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            GL  +    A     + M G +++LN + +A + +Y T
Sbjct: 212 NGLTDEITALADYKIKIPMKGKVESLNAAVSATILMYET 250


>gi|532360|gb|AAA21799.1| ORFD1 [Bacillus subtilis]
          Length = 143

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 13/140 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V   L +  RK+++L   +N +   A+   +        ++ VP + +D++V 
Sbjct: 7   YVIGKNAVIETLKS-DRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVT 65

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+  + A      LD +      +N Q   ++LD + DPHN+G+I+R+A A   
Sbjct: 66  GQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGA 123

Query: 160 DGIITTKRYSPSESAVLAKS 179
            GI+  KR +   +  +AK+
Sbjct: 124 HGIVIPKRRAVGLTTTVAKA 143


>gi|72382704|ref|YP_292059.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str.
           NATL2A]
 gi|72002554|gb|AAZ58356.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL2A]
          Length = 278

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD + DP N+G + RSA+A   + +       P    VL +S++G++ H+P+ RI +
Sbjct: 111 ILALDRIQDPGNLGNLFRSALAGEYEAMWLASGADPLNQKVL-RSSAGSVLHMPFERIGH 169

Query: 195 --------LTDALQKMHSWGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKGL 240
                   L   L       +Q +G  S +K      KP  +   +    L+LG EG G+
Sbjct: 170 SSSSSIEMLVSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGV 229

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               +   T    L    ++ +LNV++AA 
Sbjct: 230 HASIEACCTDFVTLPHSSLVDSLNVASAAV 259


>gi|307128548|ref|YP_003880578.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
 gi|306483010|gb|ADM89880.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
          Length = 260

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 3/145 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L ++L+ +  P N+GAILR+A A   D I+         +  + +S+ G +     I 
Sbjct: 109 SALFLILEGIEKPGNLGAILRTADAVGIDAILLCNNKVDIFNPNVIRSSLGTI-FTNKIV 167

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I+N    +  ++    + I  S +        ++IK   +A+I+G+E KGL     +   
Sbjct: 168 IANYKIIISWLNKNKIKIISTSVNKIYNNFFMKKIKKKSLAIIIGSESKGLSDIWFKNKK 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +M ++ + G I +LNVS + A+ LY
Sbjct: 228 NMINIPIKGKIDSLNVSTSTAIILY 252


>gi|194017287|ref|ZP_03055899.1| YsgA [Bacillus pumilus ATCC 7061]
 gi|194011155|gb|EDW20725.1| YsgA [Bacillus pumilus ATCC 7061]
          Length = 247

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 18/250 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           N + +KK+ +  ++++       LFL  G+H V  AL + + K   + +     + +D D
Sbjct: 11  NIKQWKKLHTKKERTK-----TGLFLVEGIHLVEEALKSGAVKELMVTSPDKLPSHIDPD 65

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
             L        +  +    +   E      A+   P+        +  + L++LD V DP
Sbjct: 66  IEL------YELSEEAFSAMTETETPQHIAAVCAVPVFEE-----KKYERLLLLDAVQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+A A   D +I       + +    +SA G+  H+P ++   L   +     
Sbjct: 115 GNLGTLIRTADAAGLDAVILGDGTVDAFNGKTLRSAQGSHFHLPILK-QTLQQTIPVCKE 173

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G + ++ K           ALI+G EG G+ P+  +      ++ M G  ++LN
Sbjct: 174 QGIPVYGSALNNAKAYRSVTAEGSFALIVGNEGAGINPEILQMTDHNLYVPMYGQAESLN 233

Query: 265 VSNAAAVALY 274
           V+ AAAV +Y
Sbjct: 234 VAVAAAVLVY 243


>gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
 gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
          Length = 229

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R S L ++++HV  PHN+ AILR     SCD +   + ++ S S        +A G+   
Sbjct: 18  RMSDLTVLVEHVEKPHNLSAILR-----SCDAVGVLEAHAVSFSGRPRTFNSTAQGSQRW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +     ++++ A+  +    F+  G  L  D++   + +      A +LGAE  GL  + 
Sbjct: 73  VSLRDHADISTAVHHLKERSFRLYGTNLGVDARDYRDCDFTG-PCAFVLGAEKWGLTEEA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS A A  LY
Sbjct: 132 TALMDQAIFIPMRGMVQSLNVSVATATLLY 161


>gi|317485615|ref|ZP_07944491.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923152|gb|EFV44362.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 196

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHI 187
           R   L +VL +++DPHN+ AI RSA AF   G+     Y    +   +  KS++ A + +
Sbjct: 20  RQKDLTLVLANIHDPHNVSAIYRSADAF---GVAALHLYYTDTAFPELGKKSSASARKWV 76

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +R  +  +    + + G Q +  S +   KPL         A+I+G E  G+  +   
Sbjct: 77  ESVRHRSAEELYAALKAGGHQILATSCTPESKPLGAYDFTKPTAVIMGNEHSGVPAELNS 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
                 ++ M G+I++ NVS AAAV L
Sbjct: 137 LVDGEVYIPMYGMIQSFNVSVAAAVIL 163


>gi|149610160|ref|XP_001511112.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog, partial [Ornithorhynchus anatinus]
          Length = 96

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--------------QLLM 136
            PV+TVP + +D + G E VHQG+ LE  PL   +   +                 +L +
Sbjct: 6   VPVRTVPRKVLDGLCGHE-VHQGVCLEVTPLQPRSWAEIGRGGTEEDDGEGPGGRPRLWL 64

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           VLD + DP N+GA+LR+A     D +I+
Sbjct: 65  VLDRIQDPRNLGAVLRTAHFLGVDEVIS 92


>gi|254390184|ref|ZP_05005404.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294817173|ref|ZP_06775815.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326446044|ref|ZP_08220778.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197703891|gb|EDY49703.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294321988|gb|EFG04123.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 278

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 9/148 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI- 192
           L ++ D    P NIG+++RSA AF   G+I T   +        ++ +G+L  +P +R+ 
Sbjct: 119 LGVLFDRPTSPGNIGSVIRSADAFGAHGMIVTGHAADLYDPKSVRATTGSLFSLPAVRVP 178

Query: 193 --SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQE 246
               +   +++  + G   + + +D K   + ++ +      + L++G E  GL    +E
Sbjct: 179 APDEVMTWVERQRAAGLPLVLVGTDEKG--DADVYDFDLTQPVLLLVGNETSGLSSAWRE 236

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
              +M  + M G   +LN + AA   LY
Sbjct: 237 RCDAMVGIPMTGAASSLNAATAATAVLY 264


>gi|82915128|ref|XP_728972.1| rRNA methylase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485711|gb|EAA20537.1| rRNA methylase [Plasmodium yoelii yoelii]
          Length = 361

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 131/318 (41%), Gaps = 71/318 (22%)

Query: 25  RNHRDYKKMQSFNQKSRHT--SQPENLFL-----------YGVHTVSAALNNPSRKIFQL 71
           RN + YK +  +N + ++   +   N FL           YG+++V + L    RKI + 
Sbjct: 40  RNKKKYKLLNLYNDRKKNILXNIKRNSFLDIQNKNDIDYIYGLNSVYSVLKKNERKIDKA 99

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLD 127
           +  KNA  R        + + + T+  + I +IV K        +   P    ++  T  
Sbjct: 100 IINKNA-KRNKKIHKEAYDYILNTIKEKNI-QIVYKTKNEMDELVGGFPHNDIIIEATYR 157

Query: 128 AVRNSQ------------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT---- 165
            ++N +                  + + L +V D  N+G I RS + F  D I       
Sbjct: 158 YMKNYRHFINNKKTTNNNNNNNNNIFICLHNVYDNMNVGNICRSILFFGGDSIFLKRKKK 217

Query: 166 ----KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS---DSKK 218
               K Y   ++ +L  S+ GA E++ +  ++N+ + +  +   GF  +  SS   +++ 
Sbjct: 218 KGEHKNYIKIDTPILH-SSVGASEYLNFFHVNNMENFISSLKEKGFTILSTSSPKNNTRM 276

Query: 219 PLEQEIKN------DKIALILGAEGKGLRP---KTQETATSMAHLH-----MPG------ 258
               E+KN      +K+ +ILG E KGL     K  +    + +L+      P       
Sbjct: 277 TNFVELKNMKINKNEKVMIILGNESKGLSEDIIKNSDICIYINNLYDEKNIQPNLKNIND 336

Query: 259 --IIKALNVSNAAAVALY 274
             I+ +LNV+N  ++ L+
Sbjct: 337 NLIVNSLNVNNVCSIILH 354


>gi|325474590|gb|EGC77776.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 263

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 85/178 (47%), Gaps = 24/178 (13%)

Query: 111 HQGLALETAPLLSPTLDAV---------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           HQG+   TA +  P +  +         +N + +++LD + + +N+GAI+RSA  F  + 
Sbjct: 80  HQGV---TAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSAAFFGIEN 136

Query: 162 IITTKRYSPSESAVLA-KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS------- 213
           I+ TK    +     A + A G +E +   ++S+    L++        IG         
Sbjct: 137 IVLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRG-RLTCIGTDLRAHHEI 195

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +D  + +E   K++   ++LG E +G+  + ++    +  +   G +++LNV+ AA +
Sbjct: 196 ADLGRLIE---KDEACVIVLGNEERGISEEAKKLCAHLIKIKGSGNVESLNVAQAATL 250


>gi|297243612|ref|ZP_06927543.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888363|gb|EFH27104.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 302

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N GAI+R A    CD ++         ++ L +S +G+L H+P +++S + D  
Sbjct: 148 QVRDPGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLS-VQDWF 206

Query: 200 QKMHSWGFQTIG---LSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +       + I      +D  KP       +  E+ +  +A++ G E +GL  +  +   
Sbjct: 207 ECAAKSNIRVIAADIYGTDKIKPVPFPKILVNSEVISSSLAILFGNEARGLPKEVLQQVD 266

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            ++ + + G  +++N++ +AAV L
Sbjct: 267 DISIIPIYGKAESMNLATSAAVML 290


>gi|293609868|ref|ZP_06692170.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828320|gb|EFF86683.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123096|gb|ADY82619.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 258

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 19/242 (7%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFP 92
           N + +H    +   L G H   A L    +KIF L  T+ AL   D     + +  H F 
Sbjct: 25  NARKKH----QQTVLEGTHLCLAWLQQ-QKKIFSLFTTEQALEHEDLKKITELHQGHIFV 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +  V  + +  +         LA+   P  + T+D   ++   ++L+++ DP N+G +LR
Sbjct: 80  ISEVLYRDLSTLGTSLPC---LAIIDLPKTASTIDYNVDT---LILENIQDPGNVGTLLR 133

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A +   II T+  +   S  + ++  GA   +       LTD L K     F T   
Sbjct: 134 SAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFQIPVFVT--- 190

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           SS     L  +  +     ILG EG+G      + A S+  +  PG  ++LNV+ A ++ 
Sbjct: 191 SSHRSTSLYSKDLSKPCVWILGNEGQGASDYALDHAQSVT-IPQPGGQESLNVAIAGSIC 249

Query: 273 LY 274
            +
Sbjct: 250 FF 251


>gi|256850851|ref|ZP_05556240.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661062|ref|ZP_05861976.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934478|ref|ZP_06339733.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297205725|ref|ZP_06923120.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256615913|gb|EEU21101.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260547999|gb|EEX23975.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301425|gb|EFA93714.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297148851|gb|EFH29149.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 255

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + DP NIG I+R+A A   +G++ ++  +   +    ++  G+  HIP I+   L
Sbjct: 114 ILLDSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRAMQGSQFHIPIIKADLL 173

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q   ++      +  D  K L    K  ++ALI+G E  G+       A     + 
Sbjct: 174 KTIEQFKENYIPVYASVLDDEAKELPDFEKTKELALIIGNEANGVSGDAVNLADEKLFIP 233

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           + G  ++LN + AA + +Y    HFA
Sbjct: 234 IKGQAESLNAAIAAGIMIY----HFA 255


>gi|154509194|ref|ZP_02044836.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798828|gb|EDN81248.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
           17982]
          Length = 290

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 11/174 (6%)

Query: 120 PLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           P L+  L   R    ++ ++VL+++ D  N+GA  RSA A   D ++ T + +       
Sbjct: 117 PTLADLLATARGGAPARRVVVLENLVDHTNVGAAFRSAAALGIDTVLVTPQCADPLYRRS 176

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-------EIKNDK 228
            + + G +  +P+ R+ +    +  +   GF    L+ SD    L+        +  + +
Sbjct: 177 VRVSMGTVFQVPWTRLESWPGDIATLQEAGFTVASLALSDDSVSLDDFAALPALQGPDAR 236

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +A+++G EG GL   T   +     + M   + +LNV+ A+AV  + T+   A+
Sbjct: 237 LAMVMGTEGDGLGRHTIAASDYTVKIPMDHGVDSLNVAAASAVVFWATRGVGAQ 290


>gi|124025191|ref|YP_001014307.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
 gi|123960259|gb|ABM75042.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
          Length = 229

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 82/153 (53%), Gaps = 17/153 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEH 186
           R S L +++++V  PHN+ AI+RS     CD +   + Y+     +      +A G+ + 
Sbjct: 18  RISDLTVLIENVEKPHNLSAIIRS-----CDAVGVLEAYAIFNKEKFLTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKT 244
           +   +    T+A++ +   GF+  G + + +  ++    N K   A +LGAE  G+   +
Sbjct: 73  VKINQYKMTTEAIKVLKEKGFKLYGTNLNPRS-IDYRKCNFKGPTAFVLGAEKWGI---S 128

Query: 245 QETATSM-AHLHMP--GIIKALNVSNAAAVALY 274
           +E ++ M  H+H+P  G++++LNVS AA+  L+
Sbjct: 129 EEASSLMDEHIHIPMRGMVESLNVSVAASALLF 161


>gi|42528213|ref|NP_973311.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41819483|gb|AAS13230.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 255

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 85/178 (47%), Gaps = 24/178 (13%)

Query: 111 HQGLALETAPLLSPTLDAV---------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           HQG+   TA +  P +  +         +N + +++LD + + +N+GAI+RSA  F  + 
Sbjct: 72  HQGV---TAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSAAFFGIEN 128

Query: 162 IITTKRYSPSESAVLA-KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS------- 213
           I+ TK    +     A + A G +E +   ++S+    L++        IG         
Sbjct: 129 IVLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRG-RLTCIGTDLRAHHEI 187

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +D  + +E   K++   ++LG E +G+  + ++    +  +   G +++LNV+ AA +
Sbjct: 188 ADLGRLIE---KDEACVIVLGNEERGISEEAKKLCVHLIKIKGSGNVESLNVAQAATL 242


>gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
 gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
          Length = 259

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 6/143 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A A    G+   +  +   S  + +S  G+  H+P +    +
Sbjct: 117 LILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPIVE-GAI 175

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              L+++ + G    G   + +  P  +  K    A ILG EG+G+  +    A +  +L
Sbjct: 176 PPFLKQLQAAGVAIYGTELNKEAVPYTELPKGQAAAFILGNEGQGVNQEL--LALTDKNL 233

Query: 255 HMP--GIIKALNVSNAAAVALYI 275
           ++P  G  ++LNV+ AA + +Y 
Sbjct: 234 YIPIYGQAESLNVAIAAGILMYF 256


>gi|297531654|ref|YP_003672929.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
 gi|297254906|gb|ADI28352.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
          Length = 247

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKR-YSPSESAVLAKSASGALEH 186
           R   + ++++ V+DPHN  A+LR+A AF      I+T K  +SP+            L H
Sbjct: 45  RTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYADQWLTLHH 104

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            P I+      A+  + S G+Q       +   P+     +   AL+ G E  G+  +  
Sbjct: 105 KPDIKT-----AIADLKSQGYQVYASYFGEGTIPVSDIDLSQPTALLFGNEHSGVSEEAL 159

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A     + M G +++ N+S AAA+ALY
Sbjct: 160 RLADGTFVIPMYGFVQSFNISVAAALALY 188


>gi|116492486|ref|YP_804221.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116102636|gb|ABJ67779.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 255

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 10/144 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           +VLD+V DP NIG ++R+A A    G++    T   Y+P     + ++  G+  H+   R
Sbjct: 113 LVLDNVQDPGNIGTMVRTADAAGFTGVVFGDGTADFYNPK----ILRAMQGSQYHLQLKR 168

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS 250
           + NL   ++     G    G   D      ++I   D+ +LI+G EG G+  +  E    
Sbjct: 169 L-NLEKWIRNCKDQGSVIFGSILDENARDYRKIDVPDQFSLIMGNEGNGMSERLIEMTDM 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
             ++ + G  ++LNV+ AA V ++
Sbjct: 228 NLYIPIKGSAESLNVAVAAGVLMF 251


>gi|300781270|ref|ZP_07091124.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300532977|gb|EFK54038.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 269

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V    NDP N G I+R   A   D +I        ES  + +S++G+L H+P  R 
Sbjct: 118 KLVAVCVGTNDPGNAGTIIRLVDALGADAVIFAGDTVDPESPKVVRSSAGSLFHVPVARE 177

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
            ++  A+ ++ + G +    +   +  L+      +   A + G E  GL       A  
Sbjct: 178 RDVNGAIGQLRAAGLKLAATTMGGEVSLDDPGNALDQPTAWLFGNEAHGLPDDVLAAADY 237

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + + G  ++LN+S AA++ L+
Sbjct: 238 RVSIPIKGSAESLNLSTAASICLW 261


>gi|84496735|ref|ZP_00995589.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84383503|gb|EAP99384.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 264

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 12/180 (6%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            T  PQ +  +V  +A      L TAP            +L+++L +V DP N G ++R 
Sbjct: 87  DTESPQGVLAVVAAQAHTLEQVLATAP------------RLVVLLSNVRDPGNAGTVIRG 134

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  D ++ T       S  + +S  G+L H+P +   ++ + L  + + G +T    
Sbjct: 135 ADAFGADAVLVTDGSVDVLSPKVVRSTVGSLFHLPVVTGLDVNETLDALAAHGIRTYAAD 194

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 L     +   A ++G E  GL  + ++    +  + +   +++LN++ AA + L
Sbjct: 195 GVGTTLLPDVDVSQPHAWVMGNEAWGLPAEIRDRCNDVVRVPIHERVESLNLAMAATICL 254


>gi|283836029|ref|ZP_06355770.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291068213|gb|EFE06322.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 229

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A SA+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  ++DA+ ++ S G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHPTISDAVTQLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|297622073|ref|YP_003710210.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297377374|gb|ADI39204.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 243

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 99/199 (49%), Gaps = 15/199 (7%)

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           + +LP    V  V P+ I KI G ++  +G+  E      P+       Q L+VL+++ND
Sbjct: 57  EFSLPESAEVYAVSPEMIQKISGVKS-PEGVLAEVK---MPSFKLPARLQRLLVLENLND 112

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+++AF  DG+          +    +++ GA+  +P + + +L ++L+ + 
Sbjct: 113 PGNLGTLIRTSLAFGWDGVFLLGNCCDPFNDKAIRASKGAIFKLPIV-VGDL-ESLKTLL 170

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIK 261
                ++ ++    K +    K  K+AL+LG+E  G    ++E  +    L +P    + 
Sbjct: 171 IDHQMSVFIADLEGKKIGAIPKVSKMALVLGSEAHG---PSKEVISIGERLTIPISSGLD 227

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A  + L+    HF
Sbjct: 228 SLNVAVAGGILLH----HF 242


>gi|256823639|ref|YP_003147602.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
           16069]
 gi|256797178|gb|ACV27834.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
           16069]
          Length = 231

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 5/155 (3%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGA 183
           TL + R   L + +D V+ PHN+ AI+R+A A    GI       P +       ++SG+
Sbjct: 14  TLLSNRQPDLTVFMDQVHKPHNLAAIVRTADAV---GIGHVHAVFPEDVKFTGHHTSSGS 70

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              +   + SNL   + +M + G Q +    SD+              L++G+E  G+  
Sbjct: 71  KRWVTTHKHSNLKSGIAEMKAKGMQVLAAHFSDTAVDFRTIDYTQPTCLLVGSELVGVSD 130

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  E A     + M G++++LNVS A A+ LY  Q
Sbjct: 131 EAAEIADQHVIIPMVGMVQSLNVSVATALILYEAQ 165


>gi|269955140|ref|YP_003324929.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303821|gb|ACZ29371.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 272

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD    P N+G+I+RSA AF   G+I T   +        ++ +G+L  +P +R  
Sbjct: 117 LGVVLDRPTQPGNVGSIIRSADAFGAHGVIVTGHGADPYDPRAVRATTGSLFAVPVVRAP 176

Query: 194 NLTDALQKMHSWG-----FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  + L ++ +W         +    D    +        + L++G E  GL    +E+A
Sbjct: 177 SHREVLDQVAAWRAAGTPVTVVATDEDGDVDIAGVDLTGPVLLLVGNETAGLTRAWRESA 236

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            ++A + M G   +LN +NAA+V LY
Sbjct: 237 DAVASIPMVGAASSLNAANAASVVLY 262


>gi|260556538|ref|ZP_05828756.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606]
 gi|260409797|gb|EEX03097.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606]
          Length = 258

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106
           L G H   A L    +K+F L  T+ AL   D     + +  H F +  V  + +  +  
Sbjct: 35  LEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDLKKIIELHQGHVFIISEVLYKDLSTLGN 93

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  LA+   P  + T+D   ++   ++L++V DP N+G +LRSA A +   II T+
Sbjct: 94  TLPC---LAIIDLPKTASTIDYSVDT---LILENVQDPGNVGTLLRSAAAANIKQIICTQ 147

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   S  + ++  GA   +       LTD L K     F T   SS     L  +  +
Sbjct: 148 GSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSKDLS 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ILG EG+G      + A S+  +  PG  ++LNV+ A ++  +
Sbjct: 205 KPCVWILGNEGQGASDYALDHAQSVT-IPQPGGQESLNVAIAGSICFF 251


>gi|157373473|ref|YP_001472073.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|157315847|gb|ABV34945.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
           HAW-EB3]
          Length = 231

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188
           R   L + LD V+  +NI A++R+A A    GI       P  +  V   +ASG+ + + 
Sbjct: 16  RQPDLTLCLDKVHKTNNIAAVIRTADAV---GIHQVHAIWPDLDMRVSGNTASGSQQWVK 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
            IR  ++ +A  +  + G Q +  +        +EI   +  A+ILG E  G+ P+    
Sbjct: 73  TIRHDHMDEAQTQFRAQGMQILATNFSEDAVDFREIDYTRPTAIILGNERDGVSPEGIAA 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ +Y  Q  
Sbjct: 133 ADQHIIIPMIGMVQSLNVSVASALIMYEAQRQ 164


>gi|126435572|ref|YP_001071263.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126235372|gb|ABN98772.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 248

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 65/142 (45%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V    ++P N G ++R A A   D +I         +    ++++G++  +  +  
Sbjct: 98  RLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAGSIFGVSVVEA 157

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +    +  +H  G   +  + D +  L+    +   A + GAE  GL P+    A +  
Sbjct: 158 PDTAGLVAALHGAGLTVLATTLDGEVSLDDAELSGPTAWLFGAEAHGLAPEVAALADARV 217

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G  ++LNV+ AAA+ LY
Sbjct: 218 TIPMAGSAESLNVAAAAAICLY 239


>gi|33151661|ref|NP_873014.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33147882|gb|AAP95403.1| conserved putative tRNA/rRNA methyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 349

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 14/185 (7%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQ 99
           ++ E + +YG +   +      + I +L AT    K     L + AN    + +  V   
Sbjct: 108 NRAEEMKVYGENACLSVFQQRPQAIVRLWATVEGAKKLADELSYLANQKKAYHI--VDRI 165

Query: 100 TIDKIVGKEAVHQG----LALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            +D++ G    H G    L  ++AP +L   L+  R    L++LD++++  NIG I+R+ 
Sbjct: 166 EMDRVTG--TPHHGDICLLVKKSAPFILEGYLNIPRKRDCLVLLDNIHNAQNIGGIMRTC 223

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             ++  GII     +   SA  A+ A G LE I  +   +   AL ++   G+Q + L+ 
Sbjct: 224 AFYNVKGIIVENSDTLHSSAA-ARVAEGGLEFIRPLESKHKEIALTQLRQAGYQIVHLTR 282

Query: 215 DSKKP 219
           + + P
Sbjct: 283 NKQAP 287


>gi|312870534|ref|ZP_07730652.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
 gi|311093931|gb|EFQ52257.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
          Length = 257

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 109/259 (42%), Gaps = 33/259 (12%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDAN 86
           +++KK+Q+     +   Q     L G H V+ A+     ++ QL+ T + LA   D  A 
Sbjct: 13  KNWKKLQT----KKFRRQSGEYLLDGWHLVNEAVK-AGNQLRQLIGTADQLAAHQDLVAR 67

Query: 87  LPHPFPV---------KTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLM 136
               + V          TV PQ I  +V     H+  A ++ A LL              
Sbjct: 68  AAEAYVVTPEIMQHVTDTVTPQGIAAVVDLPDAHRVPANIQGAWLL-------------- 113

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            LD V DP N+G ++R+A A    G++   R +      + +S  G+  H+  +   +L 
Sbjct: 114 -LDRVQDPGNVGTMVRTADAAGFTGVVVGDRSADIFGPKVVRSMQGSQFHLTLLE-GDLH 171

Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             +Q     G    G   + + K           ALI+G EG+G+     +  T+  ++ 
Sbjct: 172 KWIQDFKQLGAPVYGTQLNPAAKNFRDVHPGQTFALIMGNEGQGMAADLLKETTANLYIP 231

Query: 256 MPGIIKALNVSNAAAVALY 274
           M G  ++LNV+ +A + ++
Sbjct: 232 MRGDAESLNVAVSAGILMF 250


>gi|330817424|ref|YP_004361129.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
           BSR3]
 gi|327369817|gb|AEA61173.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
           BSR3]
          Length = 260

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 115/268 (42%), Gaps = 41/268 (15%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    ++   +     L G+H  SA L+   +     + T  AL+  +  
Sbjct: 7   RDNPLYKRLKALAGSTQQQRRGAQALLEGLHLASAYLDARGQPEL-CVVTDGALSHDETQ 65

Query: 85  ANLPHPFPVKTVPPQTI----DKIVGK-EAVHQGLALETAPLLSPTLDAV----RNSQLL 135
           A       V  V PQ +    D + G+  +V  G+ +    LL     A     R ++  
Sbjct: 66  AI------VARVEPQRVVSLPDALFGQLSSVVNGIGM----LLLVERPAAELPGRVARTA 115

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA---------LEH 186
           MVLD V D  N+G+ILRSA A     +   +  + + S+ + +S  GA         +E 
Sbjct: 116 MVLDGVQDAGNVGSILRSAAAAGVSQVFCMRGTAYAWSSKVLRSGMGAHFLLDIHEDVEA 175

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              I   ++  AL   H  G Q I    D   P         +A + G EG G+    +E
Sbjct: 176 EALIPRLDVPVALTDSH--GAQAID-DCDLTGP---------VAWVFGNEGAGVSAAWRE 223

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     +  PG +++LNV+ AAAV L+
Sbjct: 224 AAGLRVTIPQPGGMESLNVAAAAAVCLF 251


>gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 184

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 72/144 (50%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++LDHV   +N+G++ R++ AF  + I      S  E+  + K+A GA + + +  + 
Sbjct: 28  VVILLDHVRSQNNVGSVFRTSDAFRIEKIFLCGITSTPENREVHKTALGAEDAVDWEYVK 87

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATS 250
           + T+A+ ++   G++   +  +++   LE        K ALI G E KG++ +  + +  
Sbjct: 88  DTTEAVDRLKKEGYRIFAIEQAENTTSLENFSLSPGQKYALIFGNEVKGVQQEVIDLSDG 147

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   + N+S    + L+
Sbjct: 148 CIEIPQFGTKHSFNISVTVGIVLW 171


>gi|212711590|ref|ZP_03319718.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
           30120]
 gi|212685692|gb|EEB45220.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
           30120]
          Length = 226

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A+R   L + L+ ++ PHN+ AI+RSA A    GI       P +   L+  SA+G+   
Sbjct: 3   AMRQPDLTLCLEEIHKPHNVSAIVRSADAV---GIHNIHAVWPDQHVKLSVSSAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  I   +  +A+ ++ S G Q +  + SDS     +        +++G E  G+  K  
Sbjct: 60  VKVIPHQSTENAISQIKSQGMQILVTNLSDSAVDFREIDYTQPTCIMVGQEKTGISDKAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A     + M G++++LNVS A+A+ LY  Q
Sbjct: 120 ALADQHIIIPMVGMVQSLNVSVASALILYEAQ 151


>gi|190149477|ref|YP_001968002.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262796|ref|ZP_07544423.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914608|gb|ACE60860.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871941|gb|EFN03658.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 345

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101
           ++ E + +YG +   A        I +L AT     +L D  + L  H      V    +
Sbjct: 104 NRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVDRAEM 163

Query: 102 DKIVGKEAVHQG----LALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +++ G E  H G    L  +  P  L   L   R    L++LD VN+  N+G I+R+   
Sbjct: 164 ERVTGTE--HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCAF 221

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           +  +G+I     + + SA  A+ A G LE +  +   N   AL ++ + G+Q + L+ + 
Sbjct: 222 YGVNGVIVESADTLNSSAA-ARVAEGGLEFVRPLETKNKQIALTQLRNAGYQVVHLTRNK 280

Query: 217 K 217
           +
Sbjct: 281 Q 281


>gi|167761866|ref|ZP_02433993.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
           43183]
 gi|167700236|gb|EDS16815.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
           43183]
          Length = 270

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  R ++ ++V+D V D  NIGAI RSA A   D ++ T       +    + + G++  
Sbjct: 114 EVCREARRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFL 173

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPK 243
           +P+   + L   + ++   GF+T  ++ +D+  P++        K+A+I+G EG GL  +
Sbjct: 174 VPW---TWLDAPIGRLSDLGFRTAAMALTDNSIPIDNPALTAEPKLAIIMGTEGDGLSRE 230

Query: 244 TQETATSMAHLHMPGIIKALN 264
           T   +  +  + M   + +LN
Sbjct: 231 TIAGSDYVVRIPMSHGVDSLN 251


>gi|32034434|ref|ZP_00134616.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207693|ref|YP_001052918.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae L20]
 gi|303250729|ref|ZP_07336925.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252028|ref|ZP_07338199.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245018|ref|ZP_07527115.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247192|ref|ZP_07529243.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307251737|ref|ZP_07533641.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307253971|ref|ZP_07535823.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307256232|ref|ZP_07538019.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307258426|ref|ZP_07540167.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|126096485|gb|ABN73313.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302649458|gb|EFL79643.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650399|gb|EFL80559.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854183|gb|EFM86391.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856330|gb|EFM88482.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306860823|gb|EFM92832.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306863175|gb|EFM95117.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306865413|gb|EFM97309.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306867610|gb|EFM99457.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 345

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101
           ++ E + +YG +   A        I +L AT     +L D  + L  H      V    +
Sbjct: 104 NRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVDRAEM 163

Query: 102 DKIVGKEAVHQG----LALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +++ G E  H G    L  +  P  L   L   R    L++LD VN+  N+G I+R+   
Sbjct: 164 ERVTGTE--HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCAF 221

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           +  +G+I     + + SA  A+ A G LE +  +   N   AL ++ + G+Q + L+ + 
Sbjct: 222 YGVNGVIVESADTLNSSAA-ARVAEGGLEFVRPLETKNKQIALTQLRNAGYQVVHLTRNK 280

Query: 217 K 217
           +
Sbjct: 281 Q 281


>gi|332710004|ref|ZP_08429960.1| rRNA methylase [Lyngbya majuscula 3L]
 gi|332351375|gb|EGJ30959.1| rRNA methylase [Lyngbya majuscula 3L]
          Length = 259

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ + DP N+G I+R+AVA   +G+  +      ++  + +++ G    +P     +L
Sbjct: 114 LALETIQDPGNLGTIIRTAVAAGAEGLWLSSDSVELDNPKVLRASVGQWFRLPMAVTPHL 173

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              + +  + G Q +    D+K             ++LG E  GLR    +TA    ++ 
Sbjct: 174 PTLVAQAQAQGIQVVATVPDAKVSYWDIDWRCPSLILLGNEAAGLREDLVKTADQQVNIP 233

Query: 256 -MPGIIKALNVSNAAAVALY 274
            MPG +++LNV+ AAA+ LY
Sbjct: 234 LMPG-VESLNVAIAAALMLY 252


>gi|293390750|ref|ZP_06635084.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951284|gb|EFE01403.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 358

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           V    + K+ G E  H G+ +   ++ P  L   LD       L++LD VN+  NIG IL
Sbjct: 174 VESDELTKVSGTEH-HGGICMLVKKSHPFTLQGYLDVPHQEDCLVLLDGVNNAQNIGGIL 232

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+   F    ++  +  S + SAV  + A G  E++  +   +  +AL ++   G+Q I 
Sbjct: 233 RTCAFFGVKNMVVEEAESLN-SAVTLRVAEGGAEYVRVLETDDTRNALAQLRHAGYQIIH 291

Query: 212 LSSD 215
           +S+D
Sbjct: 292 VSND 295


>gi|256389787|ref|YP_003111351.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256356013|gb|ACU69510.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 272

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 67/146 (45%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + ++ L +  D    P N+G ++RSA AF  DG++ T   +        ++++G+L  +P
Sbjct: 118 ITDTFLGVAFDRPAQPGNLGTLIRSADAFGADGVVVTGHAADVYDPRTVRASTGSLFGLP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +R  +  + L+ +   G   +G   D    +E          ++G E  G+    +E  
Sbjct: 178 TVRTQSHREVLEWLSETGVTVVGTDEDGDTDIEDYDFCAPTLFVVGNEAVGMSTGWREAC 237

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G   +LN +NAA V LY
Sbjct: 238 DRVLSIPMRGTASSLNAANAATVVLY 263


>gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus]
          Length = 308

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L+ VL +V DP N G +LR A A   D +I T      Y+P       +++ G+L H+P 
Sbjct: 150 LVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSLYHLPV 205

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245
                +  A+Q +   G + +         L+ E+    +    A + G E  GL  +T+
Sbjct: 206 AVGVPVEQAVQGLRDAGVRILAADGAGAADLDDELDAGTMGTPTAWVFGNEAWGLPEETR 265

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A ++  + + G  ++LN++ AAAV LY
Sbjct: 266 ALADAVVRVPIHGKAESLNLATAAAVCLY 294


>gi|320531672|ref|ZP_08032612.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320136092|gb|EFW28100.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 304

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 31/254 (12%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVK 94
           N +++H        + G   V  A+ +   ++  +  T+ AL R    WD  +     V 
Sbjct: 59  NARAKH----RRFLVEGPQGVREAVRHAPGRVLDVYLTEAALERHGEIWDEAVAVGLYVH 114

Query: 95  TVPPQTIDK----------IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
               Q +D           +V  E V    AL TA         +  ++L+ VL    DP
Sbjct: 115 VTTQQVMDAMSPDAQGLLAVVATEEVTGSEALTTA---------LEGARLVAVLAQAQDP 165

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G I+R+A A   D ++  +      +  + +S +G+L H+P +    L DA+  +HS
Sbjct: 166 GNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVTALHS 225

Query: 205 WGFQTIGLSSDSKKPLE----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            G     L++D +  L+    + +     A +LG E  GL  +    A ++  + + G  
Sbjct: 226 AGLTV--LAADGRGDLDLFEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYGKA 283

Query: 261 KALNVSNAAAVALY 274
           ++LNV+ AAAV LY
Sbjct: 284 ESLNVAAAAAVCLY 297


>gi|257068745|ref|YP_003155000.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256559563|gb|ACU85410.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 275

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 3/149 (2%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P +   L A      + VL+++ D  N+GA  RSA A   D ++ T + +        + 
Sbjct: 115 PAVEELLAATGGRSRIAVLENLVDHTNVGACFRSAAAMGVDAVLVTPQCADPLYRRSIRV 174

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAE 236
           + G +  +P+ RI N   ++  +   G+   GL+  +    L+     D   +AL+LG+E
Sbjct: 175 SMGTVFQVPWTRIENWPASVHDLQEAGYVVAGLTLGEGAITLDDLAAEDHENLALVLGSE 234

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G GL   T         + M   + +LNV
Sbjct: 235 GHGLMGSTDRALDRRVTIPMQHGVDSLNV 263


>gi|302528045|ref|ZP_07280387.1| predicted protein [Streptomyces sp. AA4]
 gi|302436940|gb|EFL08756.1| predicted protein [Streptomyces sp. AA4]
          Length = 266

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 15/227 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP---PQTIDKIVG--K 107
           GV+ V++AL + +  + +L  T+ A A         HP  V+  P   P T     G  +
Sbjct: 42  GVNAVTSALAHGT--VHELFVTERAAA--------AHPSLVEAAPRVSPITERAAAGLSE 91

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
               QG+    + +  P    + +++L++VL  V +P N G ++R A A   D ++    
Sbjct: 92  TVTPQGIVAVCSLVDRPLETVLASARLVVVLVDVAEPGNAGTVIRVADAAGADAVVLAGD 151

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                +    ++A+G+  H+P  R  N+   L  + + G +T+     +   LE     D
Sbjct: 152 TVDPHNGKSVRAAAGSTFHVPLARARNIPAVLTALRAAGLRTLAAHGYASASLETVRFGD 211

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +A I G E  GL      +      + + G  ++LN++ AAAV +Y
Sbjct: 212 PVAWIFGNEAHGLPEDVLSSVDEAVRIPLYGKAESLNLATAAAVCVY 258


>gi|150009602|ref|YP_001304345.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256838324|ref|ZP_05543834.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|262383110|ref|ZP_06076247.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
 gi|149938026|gb|ABR44723.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256739243|gb|EEU52567.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|262295988|gb|EEY83919.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
          Length = 176

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLDH+   +N+G++ R++ AF  + I      +   +A + K+A GA E + +    
Sbjct: 25  LIVVLDHIRSLNNVGSVFRTSDAFRVEAIYLCGITACPPNAEIHKTALGAEETVDWEYFK 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250
           +  +A+ K+   G+    +       +   ++ DK    A+++G E KG++    +    
Sbjct: 85  DTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKYAIVMGNEVKGVQQNVVDNCDI 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|238026918|ref|YP_002911149.1| TrmH family RNA methyltransferase protein [Burkholderia glumae
           BGR1]
 gi|237876112|gb|ACR28445.1| RNA methyltransferase, TrmH family protein [Burkholderia glumae
           BGR1]
          Length = 260

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 23/259 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    ++   +     L G+H  +A L+   +     + T  ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPEL-CVVTDGALAHDETR 65

Query: 85  ANLPHPFPVKTVPPQTI----DKIVGK-EAVHQGLAL----ETAPLLSPTLDAVRNSQLL 135
           A       V  V PQ +    D + G+  +V  G+ L    E      P     R +  +
Sbjct: 66  A------IVARVEPQRVVSLPDALFGQLSSVVNGVGLLLLVERPAAALPE----RVTGTV 115

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V D  N+G+ILRSA A     +      + + S+ + +S  GA  H   + I   
Sbjct: 116 VVLDGVQDAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGA--HF-LLDIHED 172

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            +A   +   G       S   + ++    +  +A + G EG G+    +E A     + 
Sbjct: 173 VEAADLIARLGVPVALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIP 232

Query: 256 MPGIIKALNVSNAAAVALY 274
            PG +++LNV+ AAAV L+
Sbjct: 233 QPGGMESLNVAAAAAVCLF 251


>gi|148241671|ref|YP_001226828.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
 gi|147849981|emb|CAK27475.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
          Length = 229

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 27/158 (17%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186
           R + L ++++ V  PHN+ AILR+     CD     + ++ S          +A G+ + 
Sbjct: 18  RMADLTVLMEAVEKPHNLSAILRT-----CDATGVFEAHAVSLKGRPRTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGL----------SSDSKKPLEQEIKNDKIALILGAE 236
           +P     ++ DA  ++ + GF+  G           S D  KP          A +LGAE
Sbjct: 73  VPIRDHDSVKDAFAELRAKGFRIYGTMLGVNAVDYRSCDFTKP---------SAFVLGAE 123

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL  +  +       + M G++++LNVS AAA  L+
Sbjct: 124 KWGLTAEAGDAVDQPVFIPMSGMVQSLNVSVAAATLLF 161


>gi|260551451|ref|ZP_05825635.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624]
 gi|260405445|gb|EEW98938.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624]
          Length = 258

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106
           L G H   A L    +K+F L  T+ AL   D     + +  H F +  V  + +  +  
Sbjct: 35  LEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDLKKIIELHQGHVFIISEVLYKDLSTLGN 93

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  LA+   P  + T+D   ++   ++L++V DP N+G +LRSA A +   II T+
Sbjct: 94  TLPC---LAIIDLPKTASTIDYNVDT---LILENVQDPGNVGTLLRSAAAANIKQIICTQ 147

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   +  + ++  GA   +       LTD L K     F T   SS     L  +  +
Sbjct: 148 GSASLWTPRVLRAGMGAHFSLSCFENFQLTDILPKFDIPVFVT---SSHRSTSLYSKDLS 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ILG EG+G      E A S+  +  PG  ++LNV+ A ++  +
Sbjct: 205 KPCVWILGNEGQGASDYALEHAQSVT-IPQPGGQESLNVAIAGSICFF 251


>gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 281

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L+ VL +V DP N G +LR A A   D +I T      Y+P       +++ G+L H+P 
Sbjct: 123 LVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSLYHLPV 178

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245
                +  A+Q +   G + +         L+ E+    +    A + G E  GL  +T+
Sbjct: 179 AVGVPVEQAVQGLRDAGVRILAADGAGAADLDDELDAGTMGTPTAWVFGNEAWGLPEETR 238

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A ++  + + G  ++LN++ AAAV LY
Sbjct: 239 ALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|86141816|ref|ZP_01060340.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
 gi|85831379|gb|EAQ49835.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
          Length = 179

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD+V   +NIG++ R+A AF  + I      +      +AK+A GA E + +    
Sbjct: 26  IVVVLDNVRSLNNIGSVFRTADAFLIEAIYLCGICAQPPHKDIAKTALGATESVNWKYFE 85

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250
           N  DA+  +   GF    +    K  +  + +       A+I G E KG++ K  + +  
Sbjct: 86  NTLDAVDALKKEGFTIASVEQAEKAVMLNDFEVNAETSYAIIFGNEVKGVKQKVVDASDI 145

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G   + N+S +  + L+
Sbjct: 146 VLEIPQVGTKHSFNISVSVGIVLW 169


>gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 235

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A+R   L + L+ V+ PHN+ A++R+A A    GI       P +S      SA+G+   
Sbjct: 14  AMRQPDLTICLEEVHKPHNVSAVIRTADAI---GIHQIHAIWPDQSLRTQLSSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +     S +  A+++  S G Q +    SD      Q        +I+G E KG+  +  
Sbjct: 71  VQVQTHSTIQQAIEQFKSDGMQVLATHLSDKAVDFRQIDYTKPTCIIMGQEKKGISKQAV 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 ALADHDIIIPMAGMVQSLNVSVASALILYEAQRQ 164


>gi|283783144|ref|YP_003373898.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
 gi|283441076|gb|ADB13542.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
          Length = 302

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N GAI+R A    CD ++         ++ L +S +G+L H+P +++S + D  
Sbjct: 148 QVRDPGNAGAIIRVADVAGCDAVVFVDDCVSRWNSKLVRSTAGSLFHLPVVQLS-VQDWF 206

Query: 200 QKMHSWGFQTIG---LSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +       + I      +D  KP       +  E+ +  +A++ G E +GL  +  +   
Sbjct: 207 ECAAKSNIRIIAADIYGTDKIKPVPFPKILVNSEVISSSLAILFGNEARGLPKEVLQQVD 266

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            ++ + + G  +++N++ +AAV L
Sbjct: 267 DISIIPIYGKAESMNLATSAAVML 290


>gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera sp. 301]
 gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera sp. 301]
          Length = 261

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 102/256 (39%), Gaps = 12/256 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           + R++  +K+++     SR         L GVH + A +      +  ++    +     
Sbjct: 7   ISRDNSVFKQLKKLADNSRERRSEGQTLLDGVHLIEAYMATFGEPVMIIIPEGKSSIEAT 66

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    P   +P     ++    +    LAL    +  P L A    +  ++L+ + 
Sbjct: 67  GLIQTLTEIPTIMLPTLMFAELTPVASATGILAL----VKIPQLTAPEQPKFALMLEDIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G++LR+A A   + +  +   + + S    +   GA   +P +  +NL   L   
Sbjct: 123 DPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSPKALRGGQGAQFVLPIVERANLIAELDNF 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----G 258
           +   + T    +   + L  +      A ++G EG GLR +T   A     + M     G
Sbjct: 183 NGNSYAT----AMHGESLYAQDLTQATAFVIGNEGAGLRKQTIAAADKSITIPMTESQFG 238

Query: 259 IIKALNVSNAAAVALY 274
            +++LN   AAA+ L+
Sbjct: 239 SVESLNAGAAAAICLF 254


>gi|159470575|ref|XP_001693432.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158282935|gb|EDP08686.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 145

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 14/99 (14%)

Query: 111 HQGLALETAPLLSPTLD--------------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           HQGL L+ APL    +D              A     + + LD V DP N+GA++RSA  
Sbjct: 7   HQGLVLDVAPLTWTHMDEFPPAAQAAAAAAEAGAPPPVWLALDEVVDPQNLGAVVRSAYC 66

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
               G++   R     S V++K+++GA+E +P     NL
Sbjct: 67  LGAAGVLACSRNCAPLSPVVSKASAGAVEALPLHSCHNL 105


>gi|56421995|ref|YP_149313.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|56381837|dbj|BAD77745.1| rRNA methylase [Geobacillus kaustophilus HTA426]
          Length = 247

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKR-YSPSESAVLAKSASGALEH 186
           R   + ++++ V+DPHN  A+LR+A AF      I+T K  +SP+            L H
Sbjct: 45  RTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYADQWLTLHH 104

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            P I+      A+  + S G+Q       +   P+     +   AL+ G E  G+  +  
Sbjct: 105 KPDIKT-----AIADLKSQGYQVYASYLGEETIPVSDIDLSQPTALLFGNEHSGVSEEAL 159

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A     + M G +++ N+S AAA+ALY
Sbjct: 160 RLADGTFVIPMYGFVQSFNISVAAALALY 188


>gi|326800581|ref|YP_004318400.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
 gi|326551345|gb|ADZ79730.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
          Length = 252

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 112 QGLA--LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           QG+   +ET   ++   D +R+ Q  +VLD + DP N+G I+R+A  F    II ++   
Sbjct: 83  QGIVALIETPSEVAVQEDELRD-QFSLVLDTIQDPGNLGTIIRTADWFGIKHIICSEETV 141

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +  + ++  G+L H+  I  ++L   L+ +    F T+    D +   E +  ++  
Sbjct: 142 ECFNPKVVQATMGSLAHVS-IHYTDLHAFLKNVTLPSFATV---LDGQSIYETDFGSEGF 197

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +ILG EG G+ P      T    +   G  ++LNV+ +AA+  
Sbjct: 198 -IILGNEGNGIAPDLISNKTQRITIPSFGNAESLNVAVSAAICC 240


>gi|308047831|ref|YP_003911397.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630021|gb|ADN74323.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 235

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L+ V+ PHN+ A++R+A A     +     +   ++ +   +A+G+ + + 
Sbjct: 15  MRQPDLTICLEDVHKPHNLSAMIRTADAIGVPEVHAV--FLGEDNRLRGGTATGSQQWVK 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
             R  ++ DA+ +M   G Q I  +   K    + I   K  A+++G E  G+  +    
Sbjct: 73  VNRHQSIGDAVARMREQGMQVIATNLSEKAVDFRSIDYTKPTAILMGQEKTGISQEALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADHDVIVPMVGMVQSLNVSVASALLLYEAQRQ 164


>gi|255015276|ref|ZP_05287402.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
          Length = 255

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L++ LD + DP N+G I+R A  F    I+ +K  +   S    ++  GAL H+  I  
Sbjct: 102 ELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVK-IHY 160

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           ++L   LQ   +      G     +   E+ +  + I LI+G EG G+RP  +  A    
Sbjct: 161 TDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSGNGI-LIMGNEGNGIRPAIE--AFVNE 217

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
            L++P   +  + S +  VA+
Sbjct: 218 KLYIPNYPEGRDTSESLNVAI 238


>gi|302874885|ref|YP_003843518.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
 gi|307690498|ref|ZP_07632944.1| RNA methyltransferase, TrmH family [Clostridium cellulovorans 743B]
 gi|302577742|gb|ADL51754.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
          Length = 259

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 79/149 (53%), Gaps = 4/149 (2%)

Query: 128 AVRNSQLLMVL-DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           AV+N +   +  D V DP N+G I+R+A A    G+I ++      +    +S  G++  
Sbjct: 105 AVKNEKGFYIYADKVQDPGNMGTIIRTAHASGALGVIYSQGTVDIYNEKTLRSTMGSIFR 164

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQ 245
           IP I   ++ + L+++ + GF+ I  S D+ K    ++   ++++I +G EG G+  +  
Sbjct: 165 IPVILDKDM-NKLKELKAQGFKLIVSSLDTNKNF-FDVDLSQMSIIAVGNEGNGVSDELY 222

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +     + MPG  ++LNV+ AA++  +
Sbjct: 223 NLSDEKVKIPMPGGAESLNVAVAASIMAF 251


>gi|300714631|ref|YP_003739434.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299060467|emb|CAX57574.1| Putative tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 232

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ A++R+A A     +     +  S    +  SA+G+   +
Sbjct: 14  AARQHDLTVCMEQVHKPHNVAAVIRTADAVGVHEVHAV--WPGSRMRTMVSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                SN+ DA+  +   G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHSNIADAVGHLKGQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQQALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|150007109|ref|YP_001301852.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
           ATCC 8503]
 gi|256840404|ref|ZP_05545912.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381103|ref|ZP_06074241.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377529|ref|ZP_06987481.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
 gi|301311228|ref|ZP_07217156.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
 gi|149935533|gb|ABR42230.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
           ATCC 8503]
 gi|256737676|gb|EEU51002.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296280|gb|EEY84210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265548|gb|EFI07209.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
 gi|300830802|gb|EFK61444.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
          Length = 255

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L++ LD + DP N+G I+R A  F    I+ +K  +   S    ++  GAL H+  I  
Sbjct: 102 ELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVK-IHY 160

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           ++L   LQ   +      G     +   E+ +  + I LI+G EG G+RP  +  A    
Sbjct: 161 TDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSGNGI-LIMGNEGNGIRPAIE--AFVNE 217

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
            L++P   +  + S +  VA+
Sbjct: 218 KLYIPNYPEGRDTSESLNVAI 238


>gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 254

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 115/268 (42%), Gaps = 56/268 (20%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q+ ++  +     + G H V  AL   S K  ++LAT+ AL+RL   A L   +      
Sbjct: 19  QQKKYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRL---AQLGLAY------ 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-------------------MVL 138
                         +G  ++ +  ++    + +NSQ +                   ++L
Sbjct: 69  -------------DEGKLIKISQSVASHFSSTKNSQDIFMTVKINQSEHFFFSYGKWVLL 115

Query: 139 DHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           D + DP N+G I+R+A A   DG+I    T   Y+P     + +S  G+  H+  I+ ++
Sbjct: 116 DDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPK----VQRSMQGSQFHLNLIK-AD 170

Query: 195 LTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L DA+  + +        L   + K L       ++ALI+G E  G+ P+    A    +
Sbjct: 171 LPDAIASLKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLY 230

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + + G  ++LN + AA + +Y    HF+
Sbjct: 231 IPIKGRAESLNAAVAAGIMIY----HFS 254


>gi|255036484|ref|YP_003087105.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
 gi|254949240|gb|ACT93940.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
          Length = 253

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 17/192 (8%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           H   V+TV  Q ++ +   +     LA+   +    LSP        + +++LD V DP 
Sbjct: 63  HNVSVETVTAQELEGLGSFQTNDSSLAVAKTKENAFLSPAA-----KEYILMLDDVRDPG 117

Query: 146 NIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           N+G I+R A  +    I+    TT  Y+P    V+A +A G+   +  +  ++L    ++
Sbjct: 118 NLGTIIRIADWYGITKIVCSRDTTDIYNPK---VIA-AAKGSFTRVN-LYYTDLIQYFEE 172

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G Q IG         E E   D   +I+G E  G+  + ++  T+   +   G  +
Sbjct: 173 IKDTGRQVIGAFLGGDSLYEFEYPADGGIIIMGNESNGISEQVEQFVTNKIMIPRFGAAE 232

Query: 262 ALNVSNAAAVAL 273
           +LNV  A AV L
Sbjct: 233 SLNVGIATAVML 244


>gi|33239873|ref|NP_874815.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237399|gb|AAP99467.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 229

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 27/171 (15%)

Query: 120 PLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSP 170
           PLL    D +      R S L ++ + V  PHN+ AILR+     CD I   +    +  
Sbjct: 2   PLLPRRFDRIKSVLNRRMSNLTVLAEEVEKPHNLSAILRT-----CDAIGILQAHAVFKQ 56

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI- 229
           S+      +A G+ + +  ++  N+  A++ +   GF+  G +      L ++ K+ ++ 
Sbjct: 57  SKIPTFNSTAQGSQKWVKLVKHPNIEVAIKSLKGEGFKIYGTN------LNEQAKDYRLF 110

Query: 230 ------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 A +LGAE  GL             + M G++++LNVS A+A  L+
Sbjct: 111 DYKGPTAFVLGAEKWGLSQLATSLVDESIFIPMRGMVQSLNVSVASATLLF 161


>gi|120610518|ref|YP_970196.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120588982|gb|ABM32422.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 260

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 4/144 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD + D  N+G+ILRSA AF    +   K  +   S  + ++  GA  H     +  L
Sbjct: 116 VVLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGA--HFALHLVEGL 173

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             A+  + +     +  SS     L +         ILG EG+G+    Q+ AT +  + 
Sbjct: 174 --AVDDIDALALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIA 231

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
            PG  ++LNV  AAA+ L+ +  H
Sbjct: 232 QPGGEESLNVGAAAAICLHASAAH 255


>gi|298247217|ref|ZP_06971022.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297549876|gb|EFH83742.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 291

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 13/188 (6%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           VP   ++K+  K    + LAL   P  +     +  + L++V D    P N+G I+RS  
Sbjct: 83  VPLHLLEKLSNKAESSELLALVAMPEDNLARIPLTQNLLVVVFDRPASPGNLGTIIRSCD 142

Query: 156 AFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-----WG 206
           A    G+I T      Y P        +++G+   +P +R+ +  D    + S       
Sbjct: 143 ALEAHGLILTGHAVDLYDPET----ISASTGSFFALPTVRLPSQRDIEPWLQSAKKKLGA 198

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            Q IG    +++ + Q        LI+G E  G+    +E   ++  + + G   +LNV+
Sbjct: 199 LQIIGTDEKAEQEISQHDFTVPTVLIVGNETWGMSAAYKELCDAVVQIPLVGSASSLNVA 258

Query: 267 NAAAVALY 274
            A ++ LY
Sbjct: 259 CATSICLY 266


>gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
 gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
          Length = 231

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A+R   L + ++ V+ PHN+ A++R+A A    GI       PS     +  +++G+   
Sbjct: 14  ALRQHDLTVCMEQVHKPHNVSAVIRTADAV---GIHEVHAVWPSVRMRTMVSASAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +      N+TDA+  + + G Q +  +  +K    +EI   +   +++G E  G+  +  
Sbjct: 71  VKVKTHRNITDAVSHLKTQGMQVLATNLSAKAVDFREIDYTRPTCILMGQEKTGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 ALADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164


>gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
 gi|167655267|gb|EDR99396.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
          Length = 257

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 84/187 (44%), Gaps = 7/187 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148
            P + V P+   +I   E   QG+ L    +   TL  +  R+   +++L+++ DP N+G
Sbjct: 65  IPFEEVSPKVFREISDTET-PQGI-LSLVKMKQSTLSEILKRSGSSILLLENLQDPGNLG 122

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++R+       GII ++      +  + +S  G++  +P+    +L + ++ +      
Sbjct: 123 TLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQQSVH 182

Query: 209 TIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                 +     ++    DKI A ++G EG GL  +    A     + M G +++LN + 
Sbjct: 183 VYAAHLNGTDYTDESY--DKISAFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAM 240

Query: 268 AAAVALY 274
           A  + +Y
Sbjct: 241 AGGLLMY 247


>gi|260582311|ref|ZP_05850104.1| rRNA methylase [Haemophilus influenzae NT127]
 gi|260094679|gb|EEW78574.1| rRNA methylase [Haemophilus influenzae NT127]
          Length = 351

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L   LD  RN   L++LD+VN+  NIG +LR+   F    I+         SA   + A 
Sbjct: 196 LQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVADN-VENLYSAASMRVAE 254

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALIL 233
           G  E+I  +   ++  AL  +   G+Q + +S + +  PL++    +K+  +L
Sbjct: 255 GGSEYIRVLETDDIDSALMHLRKSGYQVMHVSHNKQGDPLDKVRLKNKVVFVL 307


>gi|238755588|ref|ZP_04616925.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
 gi|238706188|gb|EEP98568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
          Length = 230

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ A++R+A A     I     +  +E   L  +A+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAVIRTADAVGIHQIHAI--WPTTEMYTLLSAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                 ++ DA+Q   S G Q +      K    +EI   +   +++G E  G+  +   
Sbjct: 72  QVKTHPDIGDAVQHFKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKQALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|197334204|ref|YP_002154872.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
 gi|197315694|gb|ACH65141.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
          Length = 229

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R + L + L+ V+  +N+ AI+R+A A    GI       P+E   +L  +++GA   + 
Sbjct: 16  RQTDLTLCLEEVHKANNVSAIVRTADA---TGIHKIHAVWPTEQMQMLGHTSAGARNWVD 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                N+ DA   +   G Q +  + SD+     +       A+ILG+E  G+  K    
Sbjct: 73  VETHKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIILGSEKTGISKKALAM 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164


>gi|218887307|ref|YP_002436628.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758261|gb|ACL09160.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 344

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 12/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD V DP N+G + R+  A    G++  +    +     A++A+GALE +P  +++
Sbjct: 185 LIVALDQVQDPGNVGTLARTLYALGAAGLVVVRHGGAALGGAAARAAAGALEKLPVAKVT 244

Query: 194 NLTDALQKMHSWGF----------QTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           NL  AL +    G+          +T G   S  + P  + ++   + L+LG E  G+RP
Sbjct: 245 NLARALDEADEAGYTIYAAGGAAPETDGKPGSGPRNPFTEPLRTPAV-LVLGNEDSGIRP 303

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +       + M     +LNV+ A A+
Sbjct: 304 NVAKRCHFTLSIPMARDFDSLNVAQAGAI 332


>gi|261420869|ref|YP_003254551.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|319768540|ref|YP_004134041.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
 gi|261377326|gb|ACX80069.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|300808463|gb|ADK35364.1| Rrm [Geobacillus stearothermophilus]
 gi|317113406|gb|ADU95898.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
          Length = 247

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKR-YSPSESAVLAKSASGALEH 186
           R   + ++++ V+DPHN  A+LR+A AF      I+T K  +SP+            L H
Sbjct: 45  RTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYADQWLTLHH 104

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            P I+      A+  + S G+Q       +   P+     +   AL+ G E  G+  +  
Sbjct: 105 KPDIKT-----AIADLKSQGYQVYASYLGEGTIPVSDIDLSQPTALLFGNEHSGVSEEAL 159

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A     + M G +++ N+S AAA+ALY
Sbjct: 160 RLADGTFVIPMYGFVQSFNISVAAALALY 188


>gi|189462421|ref|ZP_03011206.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
 gi|189430859|gb|EDU99843.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
          Length = 180

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 3/152 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   HNIGA+ R++ AF  + I      +      + K+A GA   + +    
Sbjct: 28  LVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEMHKTALGAEYTVDWKYCK 87

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
              +A+ ++H+ G+  + +       +   +    N K A+++G E KG++ +  +    
Sbjct: 88  QTQEAVNELHAEGYTVLAIEQCEGSTMLDHLVLDPNKKYAIVMGNEVKGVQQEVVDMCDG 147

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS    + L+   N   K
Sbjct: 148 CIEIPQYGTKHSLNVSVTTGIVLWEFANKMMK 179


>gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
 gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
          Length = 180

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 13/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188
           L+++LD+V   +NIG++ R     +CD  +  K Y    +A      + K+A GA + + 
Sbjct: 25  LIVILDNVRSLNNIGSVFR-----TCDAFLIEKIYLCGITATPPNKEIHKTALGATDSVA 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245
           +  + N   A++K+   G   I +       +  + +     K A+I G E KG+  +  
Sbjct: 80  WEYVENTLSAVEKLKEQGVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEVKGVEQEVV 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  +  +   G   +LN+S +A +A++
Sbjct: 140 SASDEVIEIPQYGTKHSLNISVSAGIAIW 168


>gi|309792699|ref|ZP_07687150.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
 gi|308225248|gb|EFO79025.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
          Length = 267

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           DP N+G ILR+A A    G++     + P + A L +++ GA+  +  +R +    A  K
Sbjct: 124 DPGNLGTILRTADAVGASGVMLLDHATDPYDPAAL-RASMGAIFALQVVRATFAEFAAWK 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             + G   +G +  +    +  +    + L++G+E +GL P  Q     M HL M G   
Sbjct: 183 -RAQGIFLVGAADKAPTHYQDLVYPQPLVLLMGSERQGLSPDQQALCDQMVHLPMCGRSD 241

Query: 262 ALNVSNAAAVALY 274
           +LN++ A  V LY
Sbjct: 242 SLNLAVATGVLLY 254


>gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 255

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 24/261 (9%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++++KMQS  +K R +S      + G H V  A+ +  +    ++   N L +L+ D   
Sbjct: 13  KEWRKMQS--KKGRLSSG--QYIIEGWHIVDEAIKHDQQIDAVIVTDANFLDQLEVD--- 65

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P       + P+    I   E      A+ T      ++        LM LD++ DP NI
Sbjct: 66  PAVTDTYLITPEVAKHISATETPQGVFAVLTTENYHESIPEKLGGSWLM-LDNIQDPGNI 124

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQK---- 201
           G ++R+A A   +G+I  K  +   +  + +S  G+  H+      ++    A  K    
Sbjct: 125 GTMVRTADAAGMNGVIFGKGTADIYNPKVVRSMQGSQFHVRLYSGDLAVWMAAFNKHNVP 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           ++        +S D  +P +Q       AL++G EG G+     +      ++ M G  +
Sbjct: 185 VYGTELNDQAISYDDVEPTKQ------FALVMGNEGNGVSADLLDKTDQNLYIPMNGEAE 238

Query: 262 ALNVSNAAAVALYITQNHFAK 282
           +LNV+ A  + ++    HF K
Sbjct: 239 SLNVAVATGILIF----HFVK 255


>gi|255947260|ref|XP_002564397.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591414|emb|CAP97644.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 597

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 42/174 (24%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++LD V D  N+GAI+RS+     D I+   R S   S +  KS++GA E++P + + 
Sbjct: 402 IVLLLDGVVDTGNMGAIIRSSYFLGVDAIVLAGRNSAPLSPITIKSSAGAAENMPILHVK 461

Query: 194 NLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKI------------------ALIL 233
           N  D +Q+   + W F     ++D+  PL   ++ D I                   +++
Sbjct: 462 NEVDFIQRSQQNGWRF----YAADA--PLPGSVQLDHIPADGDQSGAKLPITTAPSVIMM 515

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGI--------------IKALNVSNAAAVAL 273
           G+E  GL    +  A ++  + +PG               I +LNVS AAA+ +
Sbjct: 516 GSEATGLSSHIKSHANAI--ISIPGARQSSILGVESDPARIDSLNVSVAAALLM 567


>gi|241951390|ref|XP_002418417.1| 21s rRNA [GM2251] 2'o-methyltransferase; mitochondrial large
           ribosomal RNA ribose methylase, putative; ribose
           methyltransferase, putative [Candida dubliniensis CD36]
 gi|223641756|emb|CAX43718.1| 21s rRNA [GM2251] 2'o-methyltransferase [Candida dubliniensis CD36]
          Length = 440

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 105/291 (36%), Gaps = 68/291 (23%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +++G H V A L    R++  L    N    +   A   +    K +  +    I+ K  
Sbjct: 146 YVFGTHPVKAVLAAGKRRMLDLYTFNNDDPDIVELAVEKYGITPKRLKDKNALNILCKNG 205

Query: 110 VHQGLALETAPLLSPTLDAVRNSQ------------------------------------ 133
           VH G+ L+T  L  P +  V +++                                    
Sbjct: 206 VHNGVVLKTNKLEIPYIKEVGHAENGEYKLAIESLEDDSVNIETKTVIRDGNEEVEELYP 265

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD + DP N+G+ILRSA  F  D I+     +     V  K+++GAL+ I   +  
Sbjct: 266 LSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIYQTG 325

Query: 194 NLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKND------------------------ 227
           +    +  +   G+  I  S      KP E E+ +D                        
Sbjct: 326 SSLKFIDSVRQSGWHVISTSGRPTGAKPRE-EVNDDLEIPEPHLKNKFIELQDLRTILRK 384

Query: 228 -KIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVAL 273
             + LI+G+EG G+R   +  +  +  +        I+ +LN   A  V L
Sbjct: 385 TPVMLIIGSEGSGVRTNMKMRSDYLVGIPKLRRNDNIVDSLNAGVATGVIL 435


>gi|158426093|ref|YP_001527385.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
           571]
 gi|158332982|dbj|BAF90467.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
           571]
          Length = 281

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 109/252 (43%), Gaps = 13/252 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARL-DWDAN 86
           DY+ ++  +   R       LF+     V   L  +  R +  +L ++ +L R+ D    
Sbjct: 30  DYRDVRERDLVGR-----RGLFMAEGEVVLRLLTAHGGRDLHSVLVSQASLPRIADALDL 84

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPT---LDAVRNSQLLMVLDHVN 142
           LP   PV       +D IVG   +H+G LA+  A    P    L ++    L++ L  + 
Sbjct: 85  LPRNVPVHVAGQAVMDAIVGFH-IHRGILAVGRARPQVPAPELLASLPERALVVALQGIA 143

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +  N+G I R+A AF  D ++              + + GA   +P  R     + ++ +
Sbjct: 144 NHDNMGGIFRNAAAFGADAVLLDSACCDPLYRKAIRVSVGASLIVPTARAGTTAEMMEAI 203

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            + GF  + LS   ++ L   +   + A + G EG GL P+   +  +++ + M     +
Sbjct: 204 AAAGFDLVALSPSGRERLSDIVPGGRQAALFGTEGPGLPPEVLASTRTIS-IPMAASFDS 262

Query: 263 LNVSNAAAVALY 274
           LNV+  + + L+
Sbjct: 263 LNVATTSGIVLH 274


>gi|154495177|ref|ZP_02034182.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
           43184]
 gi|154085727|gb|EDN84772.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
           43184]
          Length = 269

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  + ++ ++V+D V D  NIGAI RSA A   D ++ T+      +    + + G +  
Sbjct: 114 DVCQKARRIVVIDGVVDTTNIGAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFL 173

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPK 243
           +P+   + +  +L  +   GF+T  ++ +D+   ++  +     ++A+++G EG GL  +
Sbjct: 174 VPW---TWMDGSLGDLGRLGFRTAAMALTDNSISIDNPVLATEPRLAIVMGTEGDGLSQE 230

Query: 244 TQETATSMAHLHMPGIIKALN 264
           T   A  +  + M   + +LN
Sbjct: 231 TIAAADYVVRIPMSHGVDSLN 251


>gi|38233754|ref|NP_939521.1| putative rRNA methyltransferase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200015|emb|CAE49684.1| Putative rRNA methyltransferase [Corynebacterium diphtheriae]
          Length = 272

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 3/158 (1%)

Query: 120 PLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           P+L    +A++ N  L+ V     +P N G ++R A A   D +I        +S    +
Sbjct: 104 PVLWSAREALKGNPSLVCVAVETGEPGNAGTLVRVADAMGADCVIFAGTTVDPQSPKAVR 163

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAE 236
           +++G+L HIP +R  ++    Q + +   Q +  ++  +  L+   E+     A ++G E
Sbjct: 164 ASAGSLFHIPVVREPDMQKVWQILRARNVQMLATAAQGEINLDTAGELLEKPTAWLMGNE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL  +    A     + + G  ++LN++ AA++ +Y
Sbjct: 224 AHGLNDEALSAADHSVRIPIRGRAESLNLATAASICMY 261


>gi|225012277|ref|ZP_03702714.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225003832|gb|EEG41805.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 174

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD++   +NIG++ R+A AF  + I      +      + K+A GA E++ +    
Sbjct: 25  LILILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIHKTALGATENVAWEYAE 84

Query: 194 NLTDALQKMHS-----WGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           N  + +QK+H      W  +     +  DS +P     KN + A ILG E +G+  +  +
Sbjct: 85  NTLEVVQKLHKENVSVWAIEQTEKAIFLDSFQPK----KNTRHAFILGNEVRGVSQEAVD 140

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  +   G   +LN+S A  V ++   ++F K
Sbjct: 141 ACGQALEIPQFGTKHSLNISVATGVVVW---DYFTK 173


>gi|294651075|ref|ZP_06728412.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823024|gb|EFF81890.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 258

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 15/228 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVG 106
           L G H   A L    +KIF L  T+ ALA  D    +     H F +  V  + +  +  
Sbjct: 35  LEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDLQKVMELHQGHVFVISEVLYKDLSTL-- 91

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  LA+   P  + T+D   ++   ++L+++ DP N+G +LRSA A +   II T+
Sbjct: 92  -GTTLPCLAIIDLPKTASTIDFGVDT---LILENIQDPGNVGTLLRSAAAANIKQIICTQ 147

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   S  + ++  GA   +       L + L K     F T   SS     L  +   
Sbjct: 148 GSATLWSPRVLRAGMGAHFSLNCFENFQLNEILPKFQIPVFVT---SSHRSTSLYSKDLT 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ILG EG+G      E A ++  +  PG  ++LNV+ A ++  +
Sbjct: 205 QPCVWILGNEGQGASEYALEHAQAVT-IPQPGGQESLNVAIAGSICFF 251


>gi|268316849|ref|YP_003290568.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262334383|gb|ACY48180.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 200

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           TL  +    +++VLD++   +N+G+I R++ A   + +  T      E   L K+A GA 
Sbjct: 16  TLRRLPRHPIVVVLDNIRSIYNVGSIFRTSDAARIEKLYLTGITGTPEHRQLHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRP 242
           E +P+  + +    +  +   G+    L          ++ +D   +ALI+G E  G++P
Sbjct: 76  ETVPWEYVRDPVPLVASLRKAGYTIAALELTDTPTYTHQLPDDIFPLALIVGHELYGVQP 135

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              E A     +   G  ++LNV+ A  +A++    H+ +
Sbjct: 136 ALIERADLALEIPQFGSKQSLNVAVAYGIAVFDLVRHYRR 175


>gi|212550666|ref|YP_002308983.1| rRNA methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548904|dbj|BAG83572.1| putative rRNA methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 180

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 5/158 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V+ + L++VLD++   +N+G++ R+  AF  + +      +   +  + K+A GA + + 
Sbjct: 20  VKKNPLVVVLDNIRSLNNVGSVFRTCDAFRVETVYLCGITAIPPNVEIHKTALGAEDSVN 79

Query: 189 YIRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQ 245
           + + S +T   ++++H  G+Q I +    +  +  E   K  K A+ILG E  G+  +  
Sbjct: 80  W-KYSPITLRIVEELHQKGYQIIAVEQAEESIMLDEFQSKYSKQAIILGNEVHGIDQEVM 138

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
               +   +   G   +LNVS  A + ++ IT+N F +
Sbjct: 139 NQCDACIEIPQFGTKHSLNVSITAGIVIWEITKNSFIR 176


>gi|332653528|ref|ZP_08419273.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332518674|gb|EGJ48277.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 253

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 3/140 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-N 194
           +VLD V DP N+G I RSA A   DG++     +   S  + ++  GA   +P    +  
Sbjct: 112 LVLDGVQDPGNVGTIWRSADALGADGLLLVNGCADPYSPKVVRATMGACFRLPVWETTVE 171

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             + L K          L  D+    + ++   + A+++G+EG+G+     + A     +
Sbjct: 172 ELEGLLKTSQIPLYATALREDTVDVRQADL--GRAAVVIGSEGRGVSQALLDRAEQTVKI 229

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LN ++AA V L+
Sbjct: 230 PMRERCESLNAASAAVVVLW 249


>gi|88803205|ref|ZP_01118731.1| spoU protein [Polaribacter irgensii 23-P]
 gi|88780771|gb|EAR11950.1| spoU protein [Polaribacter irgensii 23-P]
          Length = 225

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R     +VL+ +  PHN  A++R+   F    +     +Y+   S  +AK +   L    
Sbjct: 29  RTRHFTVVLEDIFQPHNASAVVRTCDIFGIQDVHAIENKYNTKVSRHVAKGSQKWLNQYR 88

Query: 189 YIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQE 246
           Y     N  + L  +   G+Q I  S  +   + Q+     K A + G E +G+     E
Sbjct: 89  YRSDGDNTKECLDGLKEKGYQIIATSPHNNSCVLQDFDFTKKTAFVFGVEAEGVSDCVIE 148

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
            A     + M G  ++LN+S AAA+ L
Sbjct: 149 NADGFLKIPMVGFTESLNISVAAAIIL 175


>gi|310287628|ref|YP_003938886.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
 gi|309251564|gb|ADO53312.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
          Length = 289

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G ++R+A A  CD ++         +  + ++ +G+L HIP      +T  +
Sbjct: 135 QVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPV-----MTMGV 189

Query: 200 QKMHSWG----FQTIG---LSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQ 245
            +   W      +T+      +D ++P E       Q++     A+I G E +GL P   
Sbjct: 190 DEFFGWAGEKVLRTVAADVYGTDGREPRELPEVLRDQDLSGVGKAVIFGNEARGLEPGLL 249

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
                +  + + G  ++LN++ +AA+ L
Sbjct: 250 GRCDDIVRIPLYGKAESLNLATSAAIML 277


>gi|260885962|ref|ZP_05897293.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
 gi|260851105|gb|EEX70974.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
          Length = 179

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   HN+G++ R+A AF   G+             + K+A GA + + +    
Sbjct: 25  LVVVLDNVRSLHNVGSVFRTADAFRLSGVCLCGITGRPPMVEIHKTALGAEDSVDWEYFE 84

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKND-KIALILGAEGKGLRPKTQETATS 250
           +   A++ +   G+    +      +PL Q  +  D K AL+LG E KG+     + + +
Sbjct: 85  DPLAAVEALRRRGYLIFAVEQVAGSRPLHQLRLSPDQKYALVLGNEVKGVTQSVVDASDA 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS +A + L+     FAK
Sbjct: 145 AVEIPQYGTKHSLNVSVSAGIVLW----EFAK 172


>gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 278

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           RN  + + LD V DP N+G I+R+  A    G+I     +   S    ++  G++  IP 
Sbjct: 127 RNEDVYVALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLETVRATMGSIFSIPL 186

Query: 190 IRISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKT 244
            R            +W   F+ + + +  K  ++    + KN  + L++G E +GL    
Sbjct: 187 YRFDE-----SAFLNWSAHFKGMVVGTHLKGSIDYRKIDFKNGPVILLMGNEKQGLPDTL 241

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A A+ LY
Sbjct: 242 ANRCDQLARIPQSGRADSLNLAVATAIMLY 271


>gi|59710710|ref|YP_203486.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri ES114]
 gi|59478811|gb|AAW84598.1| tRNA (Guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114]
          Length = 229

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA- 174
           LE    ++  L A R + L + L+ V+  +N+ AI+R+A A    GI       P+E   
Sbjct: 3   LERYQRITSVLKA-RQTDLTLCLEEVHKANNVSAIVRTADAT---GIHKIHAVWPTEQMQ 58

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
           +L  +++GA   +      N+ DA   +   G Q +  + SD+     +       A+IL
Sbjct: 59  MLGHTSAGARNWVDVETHKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIIL 118

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G+E  G+  K    A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 119 GSEKTGISKKALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164


>gi|87303170|ref|ZP_01085968.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 5701]
 gi|87282337|gb|EAQ74297.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 5701]
          Length = 229

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 19/154 (12%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186
           R + L +VL+ V+ PHN+ AILRS     CD +   + +  S          +A G+ + 
Sbjct: 18  RMADLTVVLEAVDKPHNLSAILRS-----CDAVGVLEAHVVSLKGRPRTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P      + + L ++   GF+  G  L +D+    + +      A +LGAE  GL    
Sbjct: 73  VPLRPHERVEEVLGQLKQQGFRLYGTQLGTDAVDYRQCDFTG-PTAFLLGAEKWGL---- 127

Query: 245 QETATSMAH--LHMP--GIIKALNVSNAAAVALY 274
            E A +M    L +P  G++++LNVS AAAV L+
Sbjct: 128 SEAAAAMVDQALFIPTGGMVQSLNVSVAAAVLLF 161


>gi|301165389|emb|CBW24960.1| putative SpoU-like rRNA methylase [Bacteriovorax marinus SJ]
          Length = 256

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 88/183 (48%), Gaps = 4/183 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           + T   + + +I+G    H  +AL   P    +LD +++   +++L+ +  P NIG I+R
Sbjct: 73  IYTADKEVMQEIIGHNLHHGVMALARRPEY-ISLDELQDK--VLILNGLTSPENIGTIVR 129

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  AF+ + II  KR          + + G +  +   + ++L   L+K+ S G + I  
Sbjct: 130 NCAAFNINSIIIDKRTCSPYVRRCIRVSMGNIFRVKVYKSNDLKSDLKKLQSLGHRVIST 189

Query: 213 SS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           ++ +    L +     K  +I+G+EG G+     E +  +  + +   +  LN + ++++
Sbjct: 190 ANQEGAIDLPKYSFPKKSCVIIGSEGHGIEKDILEVSDDIIRIPIDDTVAHLNAACSSSI 249

Query: 272 ALY 274
            LY
Sbjct: 250 FLY 252


>gi|167911489|ref|ZP_02498580.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 112]
          Length = 184

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +P L A R +   +VLD V D  N+G+ILRSA A   + +      + + S+ + +SA G
Sbjct: 26  APALPA-RVAGTSVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMG 84

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A  H   + I    DA   +           S   + +        +A + G EG G+  
Sbjct: 85  A--HF-LLDIHEDVDAGTLIERLAIPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSA 141

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +E AT    +  PG +++LNV+ AAAV L+
Sbjct: 142 RWREAATHRVTIPQPGGMESLNVAAAAAVCLF 173


>gi|206900335|ref|YP_002251024.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206739438|gb|ACI18496.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 266

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 121 LLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            LSP  + ++N  +++++  D + DP N+G I+R A     D  I ++      +  + +
Sbjct: 101 FLSPKWEILKNKDNKIVLYSDDIQDPGNLGTIIRVADGVGVDAFILSENTVDPYNYKVIR 160

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++G++  +P I IS+    ++    W    I     SK   E+  K +   LILG E  
Sbjct: 161 ASTGSIFRVP-IWISDDKTFVEFFKDWKI-VIADPKGSKLYFEENFK-ESFVLILGNEAW 217

Query: 239 GL-RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G+ + K  +    +  + +   + +LNVS AA+V L+  Q  
Sbjct: 218 GIKKEKYLDLNPILLRIPLRKGVDSLNVSVAASVFLFEAQRQ 259


>gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 289

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V DP N+G I+R+A A    G+I     +   S    ++  G++  +P  R+   
Sbjct: 133 IALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSTETVRATMGSIFSVPLYRLDE- 191

Query: 196 TDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATS 250
                   +W   F+ + + +  K  L+    + KN  I L++G E +GL          
Sbjct: 192 ----SAFLNWSAHFKGMIVGTHLKGSLDYRTLDFKNGPIILLMGNEKQGLSDLLTNRCDK 247

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +A +   G   +LN++ A AV LY
Sbjct: 248 LARIPQSGRADSLNLAVATAVMLY 271


>gi|313140417|ref|ZP_07802610.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132927|gb|EFR50544.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 289

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G ++R+A A  CD ++         +  + ++ +G+L HIP      +T  +
Sbjct: 135 QVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPV-----MTMGV 189

Query: 200 QKMHSWG----FQTIG---LSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQ 245
            +   W      +T+      +D ++P E       Q++     A+I G E +GL P   
Sbjct: 190 DEFFGWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLL 249

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
                +  + + G  ++LN++ +AA+ L
Sbjct: 250 GRCDDIVRIPLYGKAESLNLATSAAIML 277


>gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63]
          Length = 260

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +   D ++     + LD++ DP N+G ILR+A A +  GI+ +       S  + + + G
Sbjct: 106 TACFDKIKTGDKFLALDNLQDPGNLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGSMG 165

Query: 183 ALEHIPYI---RISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEG 237
           A+  +P++    IS   +A  ++ S+    +  S+D  +  P           + +G EG
Sbjct: 166 AVFRLPFVVSDTISGYLNAHSELESYA-AVVSASADKITTTPFVS-----PCIVAVGNEG 219

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL+ +T         + M G  ++LN + AA++ ++
Sbjct: 220 NGLKEETISACKHKITIPMEGRAESLNAAVAASIIMW 256


>gi|113475890|ref|YP_721951.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110166938|gb|ABG51478.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 234

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 6/150 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKR-YSPSESAVLAKSASGALEH 186
           R   + ++L+ +  PHN  A+LRS  +F      I+  K  ++ ++S  +       L  
Sbjct: 32  RTRDITVILEDIYQPHNASAVLRSCDSFGVQDVHIVENKNIFTITQSVTIGSDRWLTLYR 91

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKT 244
                I+N  + L+++ + G+  I  ++  K+   +E+   N K+AL+ G+E  GL    
Sbjct: 92  YNEQSINNTEECLKRLKNEGY-VIAATTPYKEHITIEELSVNTKVALMFGSEINGLSEYA 150

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A     + M G  ++ N+S +AA+ LY
Sbjct: 151 KNNADVSVKIPMVGFSESFNISVSAALCLY 180


>gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 228

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 84/187 (44%), Gaps = 7/187 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148
            P + V P+   +I   E   QG+ L    +   TL  +  R+   +++L+++ DP N+G
Sbjct: 36  IPFEEVSPKVFREISDTET-PQGI-LSLVKMKQSTLSEILKRSGSSILLLENLQDPGNLG 93

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++R+       GII ++      +  + +S  G++  +P+    +L + ++ +      
Sbjct: 94  TLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQQSVH 153

Query: 209 TIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                 +     ++    DKI A ++G EG GL  +    A     + M G +++LN + 
Sbjct: 154 VYAAHLNGTDYTDESY--DKISAFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLNAAM 211

Query: 268 AAAVALY 274
           A  + +Y
Sbjct: 212 AGGLLMY 218


>gi|219850021|ref|YP_002464454.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219544280|gb|ACL26018.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 257

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 3/141 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++LD + DP N+G +LRSA A     +I     +   S  +A++A GA   +P +R+ 
Sbjct: 111 LRLILDEIQDPGNVGTLLRSAAAAGVGLVICAPGTADPFSPKVARAAMGAHFIVP-LRLL 169

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              D   ++   G+      S +++P          ALI+G E  G+    +  A S   
Sbjct: 170 PWDDIATELA--GYTVYAADSAAQQPYYTVDWRQPAALIIGNEAHGVSTAARTLAHSTIT 227

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G I++LN   A ++ L+
Sbjct: 228 IPMAGPIESLNAGVAGSIILF 248


>gi|189502158|ref|YP_001957875.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497599|gb|ACE06146.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 177

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   HNIGA  R A AF  + I      +      + K+A GA E + +  + 
Sbjct: 25  LILVLDNLRSMHNIGAAFRIADAFLLEKIYLCGITAQPPHREIHKTALGAEETVIWEYVP 84

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS 250
           +    LQ + + G+  + L  +D   PL+  Q   N+K AL+ G E  G++ +       
Sbjct: 85  DTYTLLQSLKTKGYLIVALEQTDESIPLQSYQINSNNKCALVFGNEVFGIQEEALAACDL 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
              +   G   +LNVS +  +A++ +T++ F 
Sbjct: 145 ALEIPQHGTKHSLNVSVSMGIAIWELTKDKFG 176


>gi|315444459|ref|YP_004077338.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|315262762|gb|ADT99503.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 249

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 65/141 (46%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+ V   +++P N G ++R A A   D ++         +    ++++G++  IP I   
Sbjct: 99  LVAVPVGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHH 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    + ++   G Q +        PL++   +   A + G E  GL       AT+   
Sbjct: 159 DAVGVVTQLKGSGLQVLATVLGGSVPLDEVDLSGPTAWLFGPEAHGLPADVVALATAGVE 218

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV++AAA+ LY
Sbjct: 219 IPMAGGAESLNVASAAAICLY 239


>gi|313887355|ref|ZP_07821046.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923274|gb|EFR34092.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 184

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++LD+V   HN+G+I R+A AF  + ++           ++ K+A GA E +P+  + 
Sbjct: 27  LTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGAEEAVPWRHLD 86

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK-PL-EQEIKNDKIA-LILGAEGKGLRPKTQETATS 250
           +  + L++  + G   + L    +  PL  Q   +D+ A LI+G E  G+  +  + A  
Sbjct: 87  SAIEFLERCRAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQYADD 146

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS A  +A+Y
Sbjct: 147 CLEIPQHGTKHSLNVSVATGIAIY 170


>gi|238764307|ref|ZP_04625258.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
           33638]
 gi|238697458|gb|EEP90224.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
           33638]
          Length = 231

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A R   L + L+ V+ PHN+ AI+R+A A    GI       P+ E      SA+G+   
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAV---GIHQIHAIWPTPEMYTRLSSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +     S++T+A+  + S G Q +      K    +EI   +   +++G E  G+  +  
Sbjct: 71  VQVKTHSDITEAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 AMADKDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 3/151 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  +    +A SA+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGNRMRTMASSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                 N++DA+  + + G Q +      K    +EI   +   +++G E  G+  +   
Sbjct: 72  EVKTHRNISDAVNHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEEALS 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G++++LNVS A+A+ LY  Q
Sbjct: 132 LADQDIIIPMTGMVQSLNVSVASALILYEAQ 162


>gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
 gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
          Length = 180

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 71/149 (47%), Gaps = 13/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188
           L+++LD+V   +NIG++ R     +CD  +  K Y    +A      + K+A GA + + 
Sbjct: 25  LIVILDNVRSLNNIGSVFR-----TCDAFLIEKIYLCGITATPPNKEIHKTALGATDSVA 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQ 245
           +  + N    ++K+   G   I +       +  + +++   K A+I G E KG+  +  
Sbjct: 80  WEYVENTLSVVEKLKEQGVYIISIEQAENSTMLNDFQSNGKQKYAIIFGNEVKGVEQEVV 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  +  +   G   +LN+S +A +A++
Sbjct: 140 SASDEVIEIPQYGTKHSLNISVSAGIAIW 168


>gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 252

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+ V   +++P N G ++R A A   D ++         +    ++++G++  IP I   
Sbjct: 99  LVAVPVGISEPGNAGTVIRVADAMGADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHH 158

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  D + ++   G Q +         L++   +   A + G E  GL  +    AT+   
Sbjct: 159 DAADVVTQLKDAGLQVLATVLGGSVSLDEVDLSGPTAWLFGPEAHGLPAEVAALATAGVE 218

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV++AAA+ LY
Sbjct: 219 IPMTGGAESLNVASAAAICLY 239


>gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
 gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
          Length = 269

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHI 187
           S L++VL+ V  P N+GA+LRSA A   D +I     T  ++P+    L +S+ GA+  +
Sbjct: 119 SPLIVVLESVEKPGNLGAVLRSADASKADAVIVCNPLTDLFNPN----LIRSSIGAIFTV 174

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P +  S+    +  +     + +        P          A+++G E  GL    ++ 
Sbjct: 175 PTVACSSQA-CMNFLKERNIKILTAQLQDSAPYYDSDMRGGTAIVMGTESTGLTDAWRKA 233

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280
           A +   + M G + +LNVS +AA+ ++  + Q  F
Sbjct: 234 ADAHIRIPMLGQLDSLNVSVSAAILMFEAVRQRSF 268


>gi|15964143|ref|NP_384496.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307301288|ref|ZP_07581050.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307317959|ref|ZP_07597396.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti
           1021]
 gi|306896361|gb|EFN27110.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306903744|gb|EFN34331.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 288

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 2/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  +  + LD V DP N+G I+R+A A    GII     +   S    ++  G++  IP 
Sbjct: 131 QEGETYVALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPI 190

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R +N  D ++   + G Q +    + S      + K+  + L++G E  GL  +    A
Sbjct: 191 AR-ANTEDFIRWQRAAGVQVVATHLAGSVDYRTIDYKSKPVVLLMGNEQAGLPVELAREA 249

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++A +   G   +LN++ A  + L+  + H 
Sbjct: 250 GALARIPQAGRADSLNLAIATGIMLFEARRHL 281


>gi|261867060|ref|YP_003254982.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412392|gb|ACX81763.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 358

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           V    + K+ G E  H G+ +   ++ P  L   LD       L++LD VN+  NIG IL
Sbjct: 174 VESDELTKVSGTEH-HGGICMLVKKSYPFTLQGYLDVPHQEDCLVLLDGVNNAQNIGGIL 232

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+   F    ++  +  S + SAV  + A G  E++  +   +  +AL ++   G+Q I 
Sbjct: 233 RTCAFFGVKNMVLEEAESLN-SAVTLRVAEGGAEYVRVLETDDSRNALAQLRHAGYQIIH 291

Query: 212 LSSD 215
           +S+D
Sbjct: 292 VSND 295


>gi|52081372|ref|YP_080163.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580]
 gi|52786747|ref|YP_092576.1| YsgA [Bacillus licheniformis ATCC 14580]
 gi|319647279|ref|ZP_08001501.1| YsgA protein [Bacillus sp. BT1B_CT2]
 gi|52004583|gb|AAU24525.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580]
 gi|52349249|gb|AAU41883.1| YsgA [Bacillus licheniformis ATCC 14580]
 gi|317390626|gb|EFV71431.1| YsgA protein [Bacillus sp. BT1B_CT2]
          Length = 248

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 15/215 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +D+KK+ +  ++++  +      + G H V  AL  P   + +++    A    D+ A +
Sbjct: 13  KDWKKLHAKKERTKTNT----FLIEGEHLVEEALKTPGV-VKEIMVADEA----DFPAMI 63

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                   +       I   E      A+   P   P        + L++ D V DP N+
Sbjct: 64  DESVARYVLSADAFSAIAETETPQAVAAVCRMPESGPF-----QYEKLLLADAVQDPGNL 118

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A   D ++  +      +A   +SA G+  HIP ++   L++ ++++     
Sbjct: 119 GTIIRTADAAGIDAVVIGQGTVDPYNAKTLRSAQGSHFHIPILK-RELSELIEELKGKSV 177

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              G +     P  +   +   AL++G EG G+ P
Sbjct: 178 PVYGTALQGAVPFREAEPSQSFALLIGNEGSGVDP 212


>gi|227820613|ref|YP_002824583.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
 gi|227339612|gb|ACP23830.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
          Length = 285

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 25/206 (12%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM--------------------- 136
           PQ + ++  K     GL LE +  +  T+    N Q+++                     
Sbjct: 76  PQ-VGQVAAKAVARGGLVLEVSEKVISTITRRDNPQMVVGIFEQRYQPLKDIRPGEGETY 134

Query: 137 -VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
             LD V DP N+G I+R+A A    GII     +   S    ++  G++  +P  R S  
Sbjct: 135 VALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAMPVARASA- 193

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D L+   S G Q +    S S      + ++  + L++G E  GL  +    A ++A +
Sbjct: 194 EDFLRWQRSAGVQVVATHLSGSVDYRTIDYRSKPVVLLMGNEQAGLPAELAREAGALARI 253

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
              G   +LN++ A  + L+  + H 
Sbjct: 254 PQAGRADSLNLAIATGIMLFEARRHL 279


>gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus]
          Length = 354

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 10/162 (6%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L PTL      Q +++ D + DP N+G ++R+A     D ++ T       +    +++ 
Sbjct: 171 LPPTL------QTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASM 224

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL- 240
           GA   +P +R+ +  + ++ M + G +       ++            AL++GAE +GL 
Sbjct: 225 GASFRLPSLRLESWQEVVELMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLS 284

Query: 241 ---RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              R + +    +   + + G +++LN + A A+ L   Q  
Sbjct: 285 DAARLELESGGIAGVSVPLEGGVESLNAAVAGAIVLGEAQRQ 326


>gi|116495156|ref|YP_806890.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|116105306|gb|ABJ70448.1| rRNA methylase [Lactobacillus casei ATCC 334]
          Length = 253

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + DP N+G ++R+A A     ++     + +    + ++  G+  H+  +  + 
Sbjct: 109 FLLLDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAMQGSQFHVRIVS-AK 167

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253
           L   ++ +H  G    G   + K      I+ +++ ALI+G EG G+ P   +   +  +
Sbjct: 168 LMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNGMDPVLLQNTDTNLY 227

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G  ++LNV+ AAAV ++
Sbjct: 228 IPIRGKAESLNVAVAAAVMMF 248


>gi|320332674|ref|YP_004169385.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319753963|gb|ADV65720.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
           21211]
          Length = 217

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 14/157 (8%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLA--KSASGALEH 186
           R   L ++++ VN PHN  AILRS     CD +   + ++ P ++  L    + SG+ E 
Sbjct: 16  RQPTLTVLMEEVNKPHNFSAILRS-----CDAVGVWEAHAVPPKNGKLPTYNATSGSAEK 70

Query: 187 IPYIRISNLTDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242
             ++R+ +  DA   ++++   GFQ +     ++    +E+   +   ++LGAE  G+  
Sbjct: 71  --WVRVQSHADAPSAVRELQGRGFQVLATHLSARSVDYRELDYTRPTCVLLGAEKWGVSE 128

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  + A +   + M G++++LNVS A A  L+  Q  
Sbjct: 129 EAADAADANVVIPMLGMVQSLNVSVACATILFEAQRQ 165


>gi|260887113|ref|ZP_05898376.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|260863175|gb|EEX77675.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
          Length = 290

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 1/148 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R    ++VLD V DP N G I+R+A A   D ++         SA   +++ G++ H+
Sbjct: 129 AMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAVRASMGSVFHV 188

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P +R  + T   + +     + +    D + +P      + ++AL  G EG G+  + + 
Sbjct: 189 PVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFGNEGNGVSDEVRR 248

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A +   + M G  ++LNV+ AAA+ LY
Sbjct: 249 MAEAKLFIPMFGKAESLNVATAAALVLY 276


>gi|224283268|ref|ZP_03646590.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 279

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G ++R+A A  CD ++         +  + ++ +G+L HIP      +T  +
Sbjct: 125 QVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPV-----MTMGV 179

Query: 200 QKMHSWG----FQTIG---LSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQ 245
            +   W      +T+      +D ++P E       Q++     A+I G E +GL P   
Sbjct: 180 DEFFGWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLL 239

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
                +  + + G  ++LN++ +AA+ L
Sbjct: 240 GRCDDIVRIPLYGKAESLNLATSAAIML 267


>gi|88809150|ref|ZP_01124659.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
 gi|88787092|gb|EAR18250.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
          Length = 291

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 122/298 (40%), Gaps = 45/298 (15%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ IS  + E I S         RRN    K+++S   ++    + + + L G H V   
Sbjct: 1   MSAISGAEGEPISS---------RRNPL-IKRIRSLQSRTGREKE-QCVLLEGTHQVQEL 49

Query: 61  LNN--PSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTID---KIVGKEAVH 111
           L    P     Q+LAT    +N  A L   A LP P  ++ +  + +      V  + V 
Sbjct: 50  LAQALPWTDPLQVLATPLWFQNHQALL---AGLPGPVQLQLMSSEALGAALSTVHPDGVA 106

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                   P   P          ++ LD + DP N+G +LR+A+A   + +       P 
Sbjct: 107 CLWPFNRLPSPGP------QPNFVLALDRLQDPGNVGTLLRTALAADVEQVWMGAGADPL 160

Query: 172 ESAVLAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGL------SSDSK 217
            S V+ +SA+GA+  +P  R        +  L  AL++  + G Q +        +    
Sbjct: 161 GSKVV-RSAAGAILTLPLRRFGLTDAQGVEQLATALKEARTRGLQVVATLVPNAATGLQV 219

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +P  Q        L+LG EG GL P+     +    L     +++LNV+ AAAV L +
Sbjct: 220 EPYWQLDWCRPTVLVLGNEGSGLHPRLLACCSHGVTLPHGRKVESLNVA-AAAVPLLL 276


>gi|238784018|ref|ZP_04628034.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
           43970]
 gi|238715126|gb|EEQ07122.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
           43970]
          Length = 230

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183
           A R   L + L+ V+ PHN+ AI+R+A A     +     TT+ Y+   SA  + S    
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTEMYTRLSSAAGSNSWVQV 73

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242
             H P+I     TDA+  + S G Q +      K    +EI   +   +++G E  G+  
Sbjct: 74  KTH-PHI-----TDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISE 127

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +    A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 128 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|191638665|ref|YP_001987831.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227534828|ref|ZP_03964877.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239632038|ref|ZP_04675069.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066720|ref|YP_003788743.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|190712967|emb|CAQ66973.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227187584|gb|EEI67651.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239526503|gb|EEQ65504.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439127|gb|ADK18893.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|327382706|gb|AEA54182.1| RNA methyltransferase, TrmH family [Lactobacillus casei LC2W]
 gi|327385893|gb|AEA57367.1| RNA methyltransferase, TrmH family [Lactobacillus casei BD-II]
          Length = 253

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + DP N+G ++R+A A     ++     + +    + ++  G+  H+  +  + 
Sbjct: 109 FLLLDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAMQGSQFHVRIVS-AK 167

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253
           L   ++ +H  G    G   + K      I+ +++ ALI+G EG G+ P   +   +  +
Sbjct: 168 LMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNGMDPVLLQNTDTNLY 227

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G  ++LNV+ AAAV ++
Sbjct: 228 IPIRGKAESLNVAVAAAVMMF 248


>gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 286

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +  + LD V DP N+G I+R+A A    GI+     +   S    ++  G++  +P 
Sbjct: 129 REGETYVALDRVRDPGNLGTIIRTADAAGASGIVLVGETTDPFSLETVRATMGSVFAMPL 188

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
            R +N  D L+   + G Q +               N K + L++G E  GL  +    A
Sbjct: 189 AR-ANAEDFLRWQRAAGVQVVATHLAGSVDYRTIDYNSKPVVLLMGNEQAGLPVELAREA 247

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++A +   G   +LN++ A  + L+  + H 
Sbjct: 248 GALARIPQSGRADSLNLAIATGIMLFEARRHL 279


>gi|269965888|ref|ZP_06179981.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
 gi|269829441|gb|EEZ83682.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 236

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P +   L+ +++GA   +  
Sbjct: 25  RQTDLTLCLEEVHKPNNVSAVIRTADA---TGLHKVHAIWPDKMRTLSHTSAGARNWVEV 81

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 82  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLA 141

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 142 DQDIIIPMVGMVQSLNVSVASAVILYEAQRQ 172


>gi|302530537|ref|ZP_07282879.1| RNA methyltransferase [Streptomyces sp. AA4]
 gi|302439432|gb|EFL11248.1| RNA methyltransferase [Streptomyces sp. AA4]
          Length = 276

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 3/149 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V  +Q+L VL+ V D  N+GA+ R+A A    G++     S        + + G +  +P
Sbjct: 118 VDGTQVLAVLEGVGDHENLGALFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLE--QEIKNDKIALILGAEGKGLRPKTQ 245
           +    +    L  + + GF    L+  +   PL   +E     IAL+LGAEG GL  +  
Sbjct: 178 FATFDSWPGGLDVLRARGFTVAALTPRADSVPLRGLREKVPGPIALLLGAEGPGLTDEAI 237

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A     + M   + +LNV+ AAA+A +
Sbjct: 238 EAADVAVRVEMVSGVDSLNVATAAAIAFH 266


>gi|91224994|ref|ZP_01260253.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
 gi|91190240|gb|EAS76510.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
          Length = 227

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P +   L+ +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLSHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 133 EQDIIIPMVGMVQSLNVSVASAVILYEAQRQ 163


>gi|224370833|ref|YP_002604997.1| SpoU [Desulfobacterium autotrophicum HRM2]
 gi|223693550|gb|ACN16833.1| SpoU [Desulfobacterium autotrophicum HRM2]
          Length = 291

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISN 194
           + LD +    N+G+I RS  A     +I     +P  E+A + K+A G  + +P+ +  +
Sbjct: 136 IALDGLRSLFNVGSIFRSCDAAGFSSLILGN--TPGRENAAVRKTAMGTADWMPHTQTVD 193

Query: 195 LTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L   L  M + G+    + +++  KP      + +  L++G E  G+          + H
Sbjct: 194 LAQTLVDMKAQGYTITAVETAEQSKPYHDNDWHHRGVLVVGNEEYGISSHVLAVCDQVVH 253

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G   +LNV+NAAA+ ++
Sbjct: 254 IPMFGRKNSLNVANAAAILMF 274


>gi|120436002|ref|YP_861688.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117578152|emb|CAL66621.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 174

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++LD++    N+G++ R A AF  + I+        +S  L ++A    + + +    
Sbjct: 19  IILLLDNITSEANLGSMFRLADAFGVEKIVFCGSEPNLQSNRLKRTARNTFKTVQFEFFE 78

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATS 250
           +    ++ + + G++ I +  + S  P+     N+  K+ LI G E  G+  +       
Sbjct: 79  DSVKTIKNLKTEGYKNIAIEITSSSNPIGSFSLNEDEKLVLIAGNERHGISAEVLNLCDE 138

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + H+ M G   ++NV+ +  +ALY     F K
Sbjct: 139 LYHIEMFGENSSMNVAQSVGIALYEITKAFNK 170


>gi|226357312|ref|YP_002787052.1| tRNA guanosine-2-O-methyltransferase [Deinococcus deserti VCD115]
 gi|226319302|gb|ACO47298.1| putative tRNA guanosine-2-O-methyltransferase (transfer
           ribonucleate guanosine 2-methyltransferase) [Deinococcus
           deserti VCD115]
          Length = 222

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIP 188
           R   L +++D VN PHN+ AI+R+     CD +   + ++ P +   LA  +    E   
Sbjct: 17  RQPTLTVLMDEVNKPHNLSAIIRT-----CDAVGVLEAHAVPPKGGPLASFSGHTYEATS 71

Query: 189 -----YIRISNLTDALQKMHSW---GFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGK 238
                ++ + + TDA+  +H+    GFQ +   LS  S    E +       ++LGAE  
Sbjct: 72  GSAHKWVPVHSHTDAVSAVHALQGQGFQVLATHLSQRSVDYREPDYTR-PTCVLLGAEKW 130

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+  +  + A     + M G++++LNVS AAA  L+  Q 
Sbjct: 131 GVSDEAADAADHNIVIPMFGMVQSLNVSVAAATILFEAQR 170


>gi|262392639|ref|YP_003284493.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
 gi|262336233|gb|ACY50028.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
          Length = 227

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P +   L+ +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLSHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163


>gi|315604571|ref|ZP_07879634.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313583|gb|EFU61637.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 289

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 28/208 (13%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQ------LLMVLDHVNDP 144
           PV   P + ++++ G   +H+G LA    P L   +  + ++Q       ++VL+++ D 
Sbjct: 86  PVFVAPEEVLERMTGFH-LHRGALAAMQRPQLPSVVQLLTSAQPPQPTRRVVVLENLVDH 144

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA  RSA A   D ++ T   +        + + G +  +P+ R+ +    +  +  
Sbjct: 145 TNVGAAFRSAAALGIDAVLVTPSCADPLYRRSVRVSMGTVFQVPWTRLESWPGDIALLRD 204

Query: 205 WGFQ--TIGLSSDS------------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            GF   ++ L  DS            + P      + ++A+++G EG GL   T   +  
Sbjct: 205 AGFTLASLALCEDSISLDDFAALPALRGP------DARLAIVMGTEGHGLGKHTIAASDY 258

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + M   + +LNV+ A+AV  + T+ 
Sbjct: 259 TVKIPMDHGVDSLNVAAASAVVFWATRG 286


>gi|222110441|ref|YP_002552705.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
 gi|221729885|gb|ACM32705.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
          Length = 260

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 109/271 (40%), Gaps = 48/271 (17%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIF------QLLA-- 73
           R++   K+++  +Q S    +   ++L G H  SAAL     P+  +F      Q LA  
Sbjct: 11  RDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSESFWPQALAEY 70

Query: 74  ----TKNA-LARLDWD--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
               TKN  +A + W   + L  P P+  V P                         P  
Sbjct: 71  ARAATKNVVIADVLWSDISALESPAPMGFVLPL------------------------PEA 106

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           + +      +VLD + D  N+G+ILRSA AF    +   K  +   S  + ++  GA  H
Sbjct: 107 EGLDGRMPTVVLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGA--H 164

Query: 187 IPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                +  L  A + ++       +  SS     L +         I+G EG+G+ P  Q
Sbjct: 165 FALRLVEGLAPADIDRLE---VPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQ 221

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + A     +  PG  ++LNV  AAA+ L+ +
Sbjct: 222 QRARRHIRIAQPGGEESLNVGAAAAICLHAS 252


>gi|91794292|ref|YP_563943.1| tRNA guanosine-2'-O-methyltransferase [Shewanella denitrificans
           OS217]
 gi|91716294|gb|ABE56220.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans
           OS217]
          Length = 233

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188
           R   L + LD V+  +NI A++RSA    C GI       P  +  V   +ASG+ + + 
Sbjct: 16  RQIDLTVCLDKVHKTNNIAAVIRSA---DCVGIHQIHAVWPDIDMRVSGNTASGSQQWVK 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
            I+     +A Q  ++   Q +  +        ++I   K  A+++G E  G  P+    
Sbjct: 73  TIKHYRFEEAEQAFNAQNMQILTTTFSDTAVDYRDIDYTKPTAIVMGNERDGTSPEAIAA 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A+    + M G++++LNVS AAA+ +Y  Q
Sbjct: 133 ASQHILIPMIGMVQSLNVSVAAALVMYEAQ 162


>gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 254

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L+ V   + DP N G ++R+A A   D ++ T     + S  + +S++G+L H+P 
Sbjct: 100 RAPRLVAVCAQIRDPGNAGTVIRAADAAGADAVVLTTGSVEATSPKVVRSSAGSLFHLPV 159

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +    L +A+  + S     +   +     +E        A + G E +GL       A 
Sbjct: 160 VTGVTLQEAVAALRSAHLAVLAADASGTTDVETAPLAAPSAWVFGTEAQGLTADELALAD 219

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           ++  + + G  ++LNV+ AA V LY
Sbjct: 220 AVVRVPLRGHAESLNVAMAATVCLY 244


>gi|319762190|ref|YP_004126127.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
           BC]
 gi|330825998|ref|YP_004389301.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
           K601]
 gi|317116751|gb|ADU99239.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           BC]
 gi|329311370|gb|AEB85785.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           K601]
          Length = 258

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 22/258 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++   K ++  +Q S    +   ++L G H  SAAL    R    + +         W 
Sbjct: 12  RDNALLKDLRRLSQDSTAYRKQGRVWLEGDHLCSAALARGQRPAIAVFSESF------W- 64

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP------LLSPTLDAVRNSQLLMVL 138
                P   +         +V  +A+ Q ++   +P      L  P   A+      +VL
Sbjct: 65  -----PLAPEEYAQAATKNVVIADALWQDISGLESPARMGFVLPLPAQQALDAQSPTVVL 119

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + D  N+G+ILRSA AF    I   K  +   S  + ++  GA  H     +  L   
Sbjct: 120 DRLQDAGNVGSILRSASAFGFAQIAALKGTAALWSPKVLRAGMGA--HFALRLVEGLD-- 175

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +Q +       +  SS     L +         I+G EG+G+ P  Q  A+    +  PG
Sbjct: 176 VQDIDRLRVPLLATSSHQGDWLHRAQLPWPCGWIMGHEGQGVSPDLQRRASRHIRIVQPG 235

Query: 259 IIKALNVSNAAAVALYIT 276
             ++LNV  AAA+ L+ +
Sbjct: 236 GEESLNVGAAAAICLHAS 253


>gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 175

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSA 180
           T+D  R +    L+++LD+V   HN+G++ R+A  F   G++    Y+P      + K+A
Sbjct: 8   TVDQFRAADKTPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCG-YTPVPPHRDIQKTA 66

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDK-IALILGAEG 237
            GA E + +   +  T+A+  +   G+  + +  + +   L+Q I  +DK +ALI G E 
Sbjct: 67  LGATETVEWQYFATTTEAVAALQEAGYTVMAVEQAVNSIMLDQFIPASDKPLALIFGNEV 126

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            G+  +  +       +   G+  +LN+S +  + ++   + FAK
Sbjct: 127 SGVDAEVMKMVEGCIEIPQSGMKHSLNISVSTGIVVW---DIFAK 168


>gi|254228570|ref|ZP_04921995.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
 gi|151938952|gb|EDN57785.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
          Length = 236

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P +   L+ +++GA   +  
Sbjct: 25  RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLSHTSAGARNWVEV 81

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 82  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLA 141

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 142 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 172


>gi|330839114|ref|YP_004413694.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
 gi|329746878|gb|AEC00235.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
          Length = 273

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 1/148 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R    ++VLD V DP N G I+R+A A   D ++         SA   +++ G++ H+
Sbjct: 112 AMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAKAVRASMGSVFHV 171

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P +R  + T   + +     + +    D + +P      + ++AL  G EG G+  + + 
Sbjct: 172 PVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFGNEGNGVSDEVRR 231

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A +   + M G  ++LNV+ AAA+ LY
Sbjct: 232 MAEAKLFIPMFGKAESLNVATAAALVLY 259


>gi|226952113|ref|ZP_03822577.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226837141|gb|EEH69524.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 258

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 15/228 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDANLPHPFPVKTVPPQTIDKIVG 106
           L G H   A L    +KIF L  T+ ALA  D     + +  H F +  V  + +  +  
Sbjct: 35  LEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDLQNVMELHQGHVFVISEVLYKDLSTL-- 91

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  LA+   P  + T+D   ++   ++L+++ DP N+G +LRSA A +   I+ T+
Sbjct: 92  -GTTLPCLAIIDLPKTASTIDFSVDT---LILENIQDPGNVGTLLRSAAAANIKQIVCTQ 147

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   S  + ++  GA   +       L + L K     F T   SS     L  +   
Sbjct: 148 GSATLWSPRVLRAGMGAHFSLNCFENFQLNEILPKFQIPVFVT---SSHRSTSLYSKDLT 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ILG EG+G      E A ++  +  PG  ++LNV+ A ++  +
Sbjct: 205 QPCVWILGNEGQGASEYALEHAQAVT-IPQPGGQESLNVAIAGSICFF 251


>gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 225

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 19/165 (11%)

Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-------TKRYS 169
           P     +DAV   R   L +V++   DP N+ A+LR+  AF   G+ T        K Y 
Sbjct: 11  PERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAF---GVQTLHAIEGPMKPYD 67

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
            ++     K +  A + +   R S+ T+ L  + + GF        +  +P+       K
Sbjct: 68  RNK-----KISQNADKWLDVRRWSSTTECLAHLRAEGFAVYATHLGERSRPMAGLSFAGK 122

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +AL+ G E +G+  +    A +   + M G +++LNVS AAA++L
Sbjct: 123 VALVFGNEQRGVSEEALALADACYAIPMRGFVQSLNVSVAAAISL 167


>gi|258654827|ref|YP_003203983.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258558052|gb|ACV80994.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 268

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 64/142 (45%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P  D +  ++ + VL+ V D  N+G+I R+A       ++     +        + + G 
Sbjct: 110 PAADLLAGARSVAVLEGVGDHENLGSIFRNAAGLGIGAVLLADGCADPLYRRSVRVSMGT 169

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + H+P+  +  L + +  +   GFQ I L+   +  L     + ++AL++G+EG GL   
Sbjct: 170 VLHVPFAPLPWLDEGVDLLRRNGFQLIALTPAGECRLADTRVSGRVALLVGSEGPGLTDA 229

Query: 244 TQETATSMAHLHMPGIIKALNV 265
               A     + M   I +LNV
Sbjct: 230 AMAAADLRVRIPMHRGIDSLNV 251


>gi|304439586|ref|ZP_07399490.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371898|gb|EFM25500.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 252

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 6/139 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V DP NIG I+R++ AF  DG++ +   +   S  + +S   ++         NL
Sbjct: 116 LYLDGVKDPGNIGTIIRTSEAFGIDGVLLSSECAELYSPKVVRSTMASIFRTKVYSDINL 175

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D        GF+ I      K   E+   +D I +++G+E +G+  +  E       + 
Sbjct: 176 MDIRN-----GFKIICADLKGKNIREKTDWDDTI-VVIGSEAQGVSKEILEICDEAVLIP 229

Query: 256 MPGIIKALNVSNAAAVALY 274
           M   I +LN + AA++ +Y
Sbjct: 230 MDKNIDSLNAAVAASLFMY 248


>gi|262375582|ref|ZP_06068815.1| rRNA methylase [Acinetobacter lwoffii SH145]
 gi|262309836|gb|EEY90966.1| rRNA methylase [Acinetobacter lwoffii SH145]
          Length = 258

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 116/246 (47%), Gaps = 11/246 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++   +++ +  +     L G H +S A  + +RKI  +  T++AL+  D++  L   
Sbjct: 15  KHLRGLIEQNTYRKKQGQTVLEGTH-LSLAWLHENRKIDSIFTTEHALSHPDFEKILAKY 73

Query: 91  FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             +  V  +++ K +         LA+ T P  +  LD   ++   ++L++V DP N+G 
Sbjct: 74  TGMVFVLSESLYKDLSTLGTSLACLAVVTLPTANYALDFKADT---LILENVQDPGNVGT 130

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-MHSWGFQ 208
           +LRSA A   + I+ TK  +   S  + ++  GA  H       N+  AL++ +  +   
Sbjct: 131 LLRSAAAAGIEQIVCTKGSASLWSPRVLRAGMGA--HFTLQTFENI--ALEQILEQFQIP 186

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
               SS   + L  +        ILG EG+G+     + A +++ +  PG  ++LNV+ A
Sbjct: 187 VYVTSSHRAESLYSKDLRKPCVWILGNEGQGVSDYAMQHAEAVS-IPQPGGQESLNVAIA 245

Query: 269 AAVALY 274
            ++  +
Sbjct: 246 GSICFF 251


>gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 261

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 45/257 (17%)

Query: 39  KSRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDW--------DANLPH 89
           K+R   +   LFL  G   V+  LN+P R           L  L W        DA   H
Sbjct: 18  KTRRGRERLGLFLVEGERLVAELLNSPLR-----------LEALLWNVASDEPPDALWRH 66

Query: 90  PFPVK---TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           P        + PQ    +   E     +A+   P   P     R    ++VLD + DP N
Sbjct: 67  PKADGRRYELSPQAFAAVADTETPQGLMAVAAIPRAEP-----RYGPRVLVLDAIQDPGN 121

Query: 147 IGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            G ++RSA AF    I+    T   Y+P     + +++ G L  +  I      DA   +
Sbjct: 122 AGTLVRSAEAFGFGEILFGTGTADPYAPK----VVRASMGGLFRVHAI----AGDAEAYL 173

Query: 203 HSWGFQ-----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +W  +      +  ++D+ +  ++     ++A+++G E +G+    ++ A     + M 
Sbjct: 174 RAWRDRHPDGVIVATAADASERCDEAPMAGEVAVVIGNEARGVSDAVRQLAQRCVAIPMA 233

Query: 258 GIIKALNVSNAAAVALY 274
           G  ++LN + A  + LY
Sbjct: 234 GKAESLNAAMAGTILLY 250


>gi|219128759|ref|XP_002184573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404023|gb|EEC43972.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 343

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 16/203 (7%)

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           ++ LP   PV   PP  +          QG LA+   P+ S        + L +VLD V+
Sbjct: 132 ESRLPLTLPV--TPP--VFAACSDTITPQGILAITEIPIFSLERRDAPQNPLYLVLDGVS 187

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRS+VA    G++         +    +SA G    IP     N  +  +K+
Sbjct: 188 DPGNLGTLLRSSVATGVAGVLLLPGSCDPWAPKAIRSAMGTTFQIPVETFENWDECREKL 247

Query: 203 HSWG---FQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGL-RPKTQETATSMAHLH- 255
              G   F    +  D       E+   +   ALI+G+EG GL +P   + A +   L  
Sbjct: 248 VHLGCNNFWAATMLEDGVGRSHYEVNWLSGPNALIIGSEGNGLTKPIRDDLAVTSPRLKS 307

Query: 256 ----MPGIIKALNVSNAAAVALY 274
               M   I++LN +   +V L+
Sbjct: 308 VYVPMKAGIESLNAAVCGSVILF 330


>gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 264

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+ LD + DP N+G I+RS  A   DGI+ +       S  + +++ G + +IP + + 
Sbjct: 113 FLLYLDRIADPGNLGTIIRSGWALGVDGILLSPESVDPFSPKVVRASMGGIFNIPLL-LD 171

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              D L+++    +     S  +++ +          L +G+E +G+RP  +E       
Sbjct: 172 FSVDELKRLKQNAYTFFCASLQARQEIFSLDFTGPSLLAIGSESQGVRPVIEEICDFNCK 231

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + +   + +LN + A A+ +
Sbjct: 232 IPIKPGVDSLNAAVACAIII 251


>gi|326560889|gb|EGE11254.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
 gi|326570818|gb|EGE20843.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
          Length = 258

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  NIG +LR+A A     +IT+   +   S    ++  GA   I       +
Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSISIYEHIAV 173

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + LQK+ +  + T   SS + K +        IA +LG EG+G+R +    A  +A L 
Sbjct: 174 NEILQKLKTPLYAT---SSHTNKVIYDHDLTSPIAWVLGHEGQGVRDEFLNNAIPIA-LP 229

Query: 256 MPGIIKALNVSNAAAVALY--ITQNHF 280
            PG  ++LNV  A +V  Y  + Q H+
Sbjct: 230 QPGGQESLNVGIAGSVCFYEMLRQRHY 256


>gi|302866851|ref|YP_003835488.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302569710|gb|ADL45912.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 294

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 8/151 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L+ VL  + DP N G +LR+A A     +I         +    ++++G+L H+  
Sbjct: 124 RGPRLVAVLAGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASAGSLFHVDV 183

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQ 245
           +R ++   A++ + + G + +  +      L+      ++A     + G+E  GL    +
Sbjct: 184 VRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLAAPTAWLFGSEAHGL--PDE 241

Query: 246 ETATSMAHLHMP--GIIKALNVSNAAAVALY 274
            TA + A + +P  G  ++LN++ AAAV LY
Sbjct: 242 LTAAADARVRVPLHGRAESLNLAAAAAVCLY 272


>gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 180

 Score = 52.0 bits (123), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 13/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188
           L+++LD+V   +NIG++ R     +CD  +  K Y    +A      + K+A GA + + 
Sbjct: 25  LIVILDNVRSLNNIGSVFR-----TCDAFLIEKIYLCGITATPPNKEIHKTALGATDSVA 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245
           +  + N   A++K+       I +       +  + +     K A+I G E KG+  +  
Sbjct: 80  WEYVENTLSAVEKLKEQDVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEVKGVEQEVV 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            T+  +  +   G   +LN+S +A +A++
Sbjct: 140 STSDEVIEIPQYGTKHSLNISVSAGIAIW 168


>gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
 gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
          Length = 264

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 74/146 (50%), Gaps = 4/146 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  L +VL+ + DP N+G ++RSA AF    ++     +   +    ++++G+   IP 
Sbjct: 113 RSDGLFLVLERLQDPGNLGTLVRSAEAFGAAAVLCLPGTADVWNQKALRASAGSAFRIPV 172

Query: 190 IRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I +    + L  + + G + I  ++ +   P   +++    A+++G EG GL  +    +
Sbjct: 173 IAVE--IERLFALQNAGMRFIAAVAREGGTPEAIDLRGG-CAVMIGNEGAGLSVELLALS 229

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
              A +  PG +++LN + A ++ LY
Sbjct: 230 DERATIPCPGAVESLNAAVAGSLLLY 255


>gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 223

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 9/150 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185
            R   L ++++ VN PHN+ AILR+     CD  G+      S + +      +A G+ +
Sbjct: 17  CRMKNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
            +      N   A+  + + GF+  G + +SK    +    +     +LGAE  GL  + 
Sbjct: 72  WVKLNNHENTIKAISDLKNKGFKLYGTTLNSKSVDYRNFDYSQNTCFVLGAEKWGLSNEL 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS AA++ L+
Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLF 161


>gi|256587794|gb|ACU98926.1| rRNA methylase family protein [Propionibacterium jensenii]
          Length = 169

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 6/146 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +P+ R+S+
Sbjct: 18  LVVCEDIVDHTNVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGTVFALPWARLSD 77

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETA 248
               L  +   GF    ++ SD    L++       +  K+AL++G EG GL       A
Sbjct: 78  WCQGLGHLKEHGFTIAAMALSDDSVSLDEFAAQLRSRPRKVALLMGTEGAGLSSHWVNQA 137

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M   + +LNV+ AAAVA Y
Sbjct: 138 DVVVRIPMHHGVDSLNVAAAAAVACY 163


>gi|118464222|ref|YP_882308.1| TsnR protein [Mycobacterium avium 104]
 gi|254775574|ref|ZP_05217090.1| TsnR protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118165509|gb|ABK66406.1| TsnR protein [Mycobacterium avium 104]
          Length = 263

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V   +++P N G ++R + A    G++         +    ++++G++  +P +  
Sbjct: 108 RLIAVAVQISEPGNAGTLIRLSDAMGAAGVLLAGHSVDPYNGKCLRASAGSIFSVPVVAA 167

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
            +L +A+  +   G Q +  + D +  L++  E+     A + G E  GL  +    A  
Sbjct: 168 PDLREAVAAVREAGLQLLATTVDGEVRLDRAGELLAKPTAWLFGPESHGLPSEVAAAADH 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G  ++LNV++AAA+ LY
Sbjct: 228 RVRIPMAGGAESLNVASAAAICLY 251


>gi|194334722|ref|YP_002016582.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
           271]
 gi|194312540|gb|ACF46935.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
           271]
          Length = 265

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 70/141 (49%), Gaps = 3/141 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD V DP N+G I+R+A  F    +I+ +  +   +    +S++G+L  +      
Sbjct: 117 LVVALDDVQDPGNVGTIIRTAAWFGAAAVISGRGTADCYNPKSVRSSAGSLYGLELYSAD 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L   L ++ + GF  +  S         ++   ++ L++G E  G+    Q+ + SM  
Sbjct: 177 DLGVELGRLQARGFHIVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVM 236

Query: 254 L-HMPGI--IKALNVSNAAAV 271
           + H P    +++LN + +AA+
Sbjct: 237 IPHGPASPHVESLNAAVSAAI 257


>gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 223

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 9/150 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185
            R   L ++++ VN PHN+ AILR+     CD  G+      S + +      +A G+ +
Sbjct: 17  CRMKNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
            +      N   A+  + + GF+  G + +S+    +    +     +LGAE  GL  + 
Sbjct: 72  WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNEL 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +        + M G++++LNVS AA++ L+
Sbjct: 132 KSMVDQSIFIPMRGMVQSLNVSVAASILLF 161


>gi|228470939|ref|ZP_04055784.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
 gi|228307336|gb|EEK16350.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
          Length = 186

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++LD+V   HN+G+I R+A AF  + ++           +L K+A GA E +P+  + 
Sbjct: 27  LTILLDNVRSMHNVGSIFRTADAFRIEELLLVGITGCPPHPLLHKTAIGAEEAVPWRHLD 86

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIA-LILGAEGKGLRPKTQETATS 250
           +  +AL++    G   + L    +      Q   +D+ A LI+G E  G+  +  + A  
Sbjct: 87  SAIEALEQYRQEGRTILALEQTHQSITLGSQPALDDRGAVLIVGNEVHGVSDEVIQYADY 146

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS A  +A+Y
Sbjct: 147 CLEIPQYGTKHSLNVSVATGIAIY 170


>gi|312139879|ref|YP_004007215.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311889218|emb|CBH48532.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 266

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 2/145 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++LL V   + +P N G ++R A A   D  I         +    +S++G+L HIP +R
Sbjct: 112 TRLLAVPVAIGEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVR 171

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETAT 249
             N+   L  + S G Q +  ++D +  L++  ++     A + G E  GL       A 
Sbjct: 172 ERNVDAVLDALTSAGIQILATAADGEVDLDEADDLLARPTAWLFGNEAHGLDAAVARRAD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LN++ AA++ LY
Sbjct: 232 HRVRIPIRGRAESLNLATAASICLY 256


>gi|307729346|ref|YP_003906570.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
 gi|307583881|gb|ADN57279.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
          Length = 262

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 19/257 (7%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +  +  L G H  SA L+   +     + T+ AL   +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDAAGQPEM-CVVTEGALRHDEAQ 65

Query: 85  ANLPHPFPVKTVPPQTI----DKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMV 137
           A       V  +  Q I    D + G+    VH  G+ L    L +P  + V   Q  +V
Sbjct: 66  A------IVSRIDSQRIVTLPDALFGQLSNVVHGVGMLLLVEKLDTPLPETV--GQTCIV 117

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V D  N+G+ILRSA A     +      + + S+ + +S  GA  H   ++I    D
Sbjct: 118 LDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVD 174

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           A   +       +   S   + +     + ++A + G EG G+    ++  +    +  P
Sbjct: 175 AQTLIERLAVPVVITDSHGAEAIYDCDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQP 234

Query: 258 GIIKALNVSNAAAVALY 274
           G +++LNV+ AAAV ++
Sbjct: 235 GGMESLNVAAAAAVCMF 251


>gi|171059516|ref|YP_001791865.1| tRNA/rRNA methyltransferase SpoU [Leptothrix cholodnii SP-6]
 gi|170776961|gb|ACB35100.1| tRNA/rRNA methyltransferase (SpoU) [Leptothrix cholodnii SP-6]
          Length = 277

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA---LEHIPYIRI 192
           +VLD + DP N+G +LRSA A     ++  K  +   S  + ++  GA   L  +  + +
Sbjct: 134 LVLDRLQDPGNVGTLLRSAAALGVKQVLAMKGTAALWSPKVLRAGMGAHFALHLVEGVEV 193

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           + L D L          +  SS +++ L +       A +LG EG+G+            
Sbjct: 194 NEL-DTLD------LPLLATSSHAEQSLHEVRLPQPCAWVLGHEGQGVAEAVMRRCALTV 246

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            +  PG  ++LNV+ AAA+ LY
Sbjct: 247 RIPQPGGEESLNVAAAAAICLY 268


>gi|170781630|ref|YP_001709962.1| putative rRNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156198|emb|CAQ01340.1| putative rRNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 266

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 13/156 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L+ +L+ V DP N G I+R+A A   D +I T R    Y+P     + ++ +G+L H+P 
Sbjct: 115 LIAILEEVRDPGNAGTIIRAADAAGADAVILTGRSVDLYNPK----VVRATTGSLFHLPV 170

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQE 246
             +  L   L+++ + G Q +         L +          A + G E +GL+ +   
Sbjct: 171 AIMPELDAVLERVRAAGLQVLAADVKGDDLLAERTSGGLAGPTAWLFGNEARGLQDEHLA 230

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A     + + G  +++N++ AA+V LY  ++ FA+
Sbjct: 231 LADRAVVVPIYGQAESMNLATAASVCLY--ESAFAQ 264


>gi|94985187|ref|YP_604551.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
 gi|94555468|gb|ABF45382.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
          Length = 263

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 4/176 (2%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +  +K+ G+E     LAL   P  +P L  V  + +++VL  +  P NIGAILR+A A  
Sbjct: 81  EAFEKVSGRENPDGLLALVPTP--APRLPEVGEAGVVVVLHGLEKPGNIGAILRTADAAG 138

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++   R +   S  + +++ G++  +P +       AL  +       +  + D+ +
Sbjct: 139 AAGVLVLGRGADVYSPNVIRASQGSVFTLP-VANLEEAAALAWLAEHRLTRVACTPDAPQ 197

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    ++AL+LGAE +GL P     A     + M G   +LNV+ AAA+ LY
Sbjct: 198 VYWDAPLTGRVALVLGAEHEGL-PPAWRAAEMPVRVPMHGTADSLNVATAAALVLY 252


>gi|325674243|ref|ZP_08153932.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554923|gb|EGD24596.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 266

 Score = 52.0 bits (123), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 2/145 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++LL V   + +P N G ++R A A   D  I         +    +S++G+L HIP +R
Sbjct: 112 TRLLAVPVAIGEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVR 171

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETAT 249
             N+   L  + S G Q +  ++D +  L++  ++     A + G E  GL       A 
Sbjct: 172 ERNVDAVLDALTSAGIQILATAADGEVDLDEADDLLARPTAWLFGNEAHGLDAAVARRAD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LN++ AA++ LY
Sbjct: 232 HRVRIPIRGRAESLNLATAASICLY 256


>gi|224102553|ref|XP_002312722.1| predicted protein [Populus trichocarpa]
 gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa]
 gi|222852542|gb|EEE90089.1| predicted protein [Populus trichocarpa]
          Length = 216

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 9/148 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           VR S   +V+ ++   HN+G + RSA AF    +I   R   +     +  + G+  H+P
Sbjct: 2   VRES--YVVVHNIAKRHNVGTLARSATAFGVKELILVGRRDFN-----SFGSHGSTSHLP 54

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +    +L+DA   +        G+  +DS  P+ +       A +LG EG GL  K  E 
Sbjct: 55  FRHFHSLSDARNFLKEKDCDICGVEITDSAFPVNEHPFKRSTAFLLGNEGTGLSTKECEI 114

Query: 248 ATSMAHLHMPGIIKA-LNVSNAAAVALY 274
                ++   G   A LNV+ AA++ L+
Sbjct: 115 CDFFVYIPQYGCGTASLNVTVAASIVLH 142


>gi|320449193|ref|YP_004201289.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
 gi|320149362|gb|ADW20740.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
          Length = 257

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query: 125 TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKS 179
           TL  V+  Q  L++VL  +  P N+GAILRSA     D ++  +    YSP     + ++
Sbjct: 99  TLKEVQLPQDPLVLVLLGLEKPGNLGAILRSADGAGVDLVLVAEGVDLYSPQ----VIRN 154

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ++G +  +P   ++   +A + +   G   +  +   +K   +E     +A +LG E +G
Sbjct: 155 STGVVFSLPVYPVAE-EEAARFLEEKGLFLVAATPRGEKVYWEENYQRGVAFLLGTEDEG 213

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L       A     + M G+  +LNVS +AA+ LY
Sbjct: 214 LSEAWLARAGVRVRIPMRGVADSLNVSVSAALLLY 248


>gi|154495145|ref|ZP_02034150.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
           43184]
 gi|154085695|gb|EDN84740.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
           43184]
          Length = 256

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 10/147 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ L++ LD + DP N+G I+R A  F  + I+ +   +   S    ++  GAL H+  +
Sbjct: 100 STSLVLALDGIQDPGNLGTIIRLADWFGIEHIVCSPDTADVFSPKTVQATMGALAHVK-V 158

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             + L D L+   +      G   D +    +E+  + I +++G EG G+RP+ ++    
Sbjct: 159 HYTELEDYLKAQAARQIPLFGTFLDGENMYTKELSANGI-IVMGNEGNGIRPQIEKLINQ 217

Query: 251 MAHLHMPGI------IKALNVSNAAAV 271
              L++P         ++LNV+ A AV
Sbjct: 218 --KLYIPSFPPERETSESLNVAIATAV 242


>gi|123440446|ref|YP_001004440.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087407|emb|CAL10188.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 230

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A R   L + L+ V+ PHN+ AI+R+A A    GI       P+ +      SA+G+   
Sbjct: 14  ATRQPDLTVCLEEVHKPHNVSAIIRTADAV---GIHQIHAIWPTPAMYTRLSSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +     S++TDA+  + S G Q +      K    +EI   +   +++G E  G+  +  
Sbjct: 71  VQVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 AMADKDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|108799944|ref|YP_640141.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119869054|ref|YP_939006.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108770363|gb|ABG09085.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119695143|gb|ABL92216.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 248

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 2/152 (1%)

Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +LD V  +  +L+ V    ++P N G ++R A A   D +I         +    ++++G
Sbjct: 88  SLDEVLGASPRLVAVAVETSEPGNAGTLIRLADAMGADAVILAGNSVDPYNGKCLRASAG 147

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++  +  +   +    +  +H  G   +    D +  L+    +   A + GAE  GL P
Sbjct: 148 SIFGVSVVEAPDTAGLVAALHGAGLTVLATMLDGEVSLDDAELSGPTAWLFGAEAHGLAP 207

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                A +   + M G  ++LNV+ AAA+ LY
Sbjct: 208 DVAALADARVTIPMAGSAESLNVAAAAAICLY 239


>gi|238797645|ref|ZP_04641141.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
           43969]
 gi|238718509|gb|EEQ10329.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
           43969]
          Length = 233

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A R   L + L+ V+ PHN+ AI+R+A A    GI       PS E      +A+G+   
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAV---GIHQVHAIWPSTEMYTRLSAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +      ++TDA+  + S G Q +      K    +EI   +   +++G E  G+  +  
Sbjct: 71  VQVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|88802324|ref|ZP_01117851.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
 gi|88781182|gb|EAR12360.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
          Length = 168

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 129 VRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           ++N Q    + +V D +  P NIG   R + +F    I   +    +E+ ++ K+A   +
Sbjct: 9   IKNEQTQFPITIVCDAIRTPENIGMCFRISESFGVSKIYFHEASPSTENKIVKKTARNTI 68

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLR 241
               +   SN  + +  + + G + IG+    K    Q+    KN+KI L+LG+E  G+ 
Sbjct: 69  HQTEHETYSNFKELITTLRAQGNKIIGIEITDKSINIQDFDFQKNEKIVLLLGSERNGV- 127

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +A     + M G   ++NV ++ A+ LY
Sbjct: 128 -ENINSADETIAIPMYGKNSSMNVIHSLAITLY 159


>gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
 gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
          Length = 229

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R S L ++L+HV   HN+ AILRS     CD +   + ++ S    L    + AL    +
Sbjct: 18  RISDLTVILEHVEKSHNLSAILRS-----CDAVGIIEAHAVSLRERLRIFQNTALGSQKW 72

Query: 190 IRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRP 242
           +R+ N   +  A+ ++   GF+  G +         + +N       + +LGAE  GL  
Sbjct: 73  VRLRNYNSIVPAITQLKQRGFKIYGTNLGIGSI---DYRNCDFLGPSSFLLGAEKWGLSQ 129

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  E       + M G++++LNVS A A+ L+
Sbjct: 130 EAAELVDQSITIPMSGMVQSLNVSVATAILLF 161


>gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 178

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           LE + L   +++  + S    L++VLD +   HNIG++ R++ AF  + II     +   
Sbjct: 4   LENSELERKSIEDFKKSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKI 229
           +  + K+A GA E + +    N+ + ++ +      T+ +         Q+    KN K 
Sbjct: 64  NKEIHKTALGATETVAWEHHENVLEVIENLKKENVLTLAIEQVESAVFLQDFQVEKNQKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL+ G E  G+  +          +   G   +LN++ +A + ++
Sbjct: 124 ALVFGNEVYGVSQEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVW 168


>gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205]
          Length = 238

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS---PSESAVLAKSASGALEH 186
           R   L +V++ V+ PHN+ AILR     +CD +   + +    P        +A G+ + 
Sbjct: 25  RMGDLTVVMEQVDKPHNLSAILR-----TCDAVGALEAHVVSLPGRPRTFNNTAKGSQKW 79

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P     ++   LQ +   GF+  G  LS D+    + +        ++GAE  G+  + 
Sbjct: 80  VPLHPHPSIEGCLQGLKDKGFRIYGTHLSVDAVDYRDCDFTGPS-CFLMGAEKWGMSEEA 138

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS AAA  L+
Sbjct: 139 LALVDQPLFIPMTGMVQSLNVSVAAATLLF 168


>gi|326382700|ref|ZP_08204391.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198819|gb|EGD56002.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 251

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 14/192 (7%)

Query: 91  FPVKTVPPQTIDKIV------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            PV  V  +  DK+       G  AV Q L +  A +L        + +LL++     +P
Sbjct: 58  IPVHRVTARAADKLSETSTAPGVFAVCQLLTVGLAAVLGD------DPRLLVIAVEPREP 111

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G + R A A   D +I         +    ++++G++ HIP +R  ++   L  +  
Sbjct: 112 GNLGTLTRCADAMGADAVILLGDSVDPHNGKSVRASAGSVFHIPVVRTVDVAGGLAAVAD 171

Query: 205 WGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            G  T+  + D +  L+   ++     A + G E  GL  +  + A     + + G  ++
Sbjct: 172 AGIVTLATTMDGELSLDDADDVLARPHAWLFGNEAHGLPQQVLDGADRSVRIPLRGRAES 231

Query: 263 LNVSNAAAVALY 274
           LN++ A+AV LY
Sbjct: 232 LNLAAASAVCLY 243


>gi|332884280|gb|EGK04548.1| hypothetical protein HMPREF9456_00875 [Dysgonomonas mossii DSM
           22836]
          Length = 175

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   +NIG++ R++ AF  + +      +   +  + K+A GA   + +   S
Sbjct: 25  LIIVLDNVRSLNNIGSVFRTSDAFLVEAVYLCGITATPPNVEIHKTALGAENSVAWAYYS 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           +   A++++   G+    +       +  E++ D   K A+ILG E KG++         
Sbjct: 85  DTDQAVEELKKNGYTLCAVEQAQNSIMLDELQLDSTKKYAVILGNEVKGVQQDVVSRCDC 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS AA + ++
Sbjct: 145 CVEIPQYGTKHSLNVSVAAGMVIW 168


>gi|189346347|ref|YP_001942876.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
 gi|189340494|gb|ACD89897.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
          Length = 219

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +V+D+VN  HN+ A++RS     CD     + ++ S    +    + A     +
Sbjct: 17  RQTSLTVVMDNVNKSHNLAALVRS-----CDAAGIHEIHAVSRRKHIFTRHNAAAGSSKW 71

Query: 190 IRIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQ 245
           + I+   ++    +++   G Q +  +S  K    +EI      ALILGAE  G+     
Sbjct: 72  VNINLYHDIESVYRRLRDDGMQVLAAASTEKSVDFREIDYTLPTALILGAEWDGISEDAI 131

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A     + M G++++LNVS A AV +Y  Q
Sbjct: 132 SGADRCIGVPMFGMVESLNVSVAGAVIIYEAQ 163


>gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
 gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
          Length = 183

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 6/147 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ RS  AF  +GI      +   +A + K+A G  + + +   S
Sbjct: 28  LVVVLDDVRSLYNVGSVFRSGDAFRIEGIYLCGITATPPNAEIHKTALGGEDSVAWRYFS 87

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQET 247
              DA+ ++ S  +    +         Q++  DK       A++ G E KG++ +    
Sbjct: 88  RAEDAVTELQSHDYFVYSIEQVEGSIKLQDLTIDKTSQAKGYAVVFGNEVKGVKQEVVNM 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     +   G   +LNVS  A + ++
Sbjct: 148 SDGCLEIPQFGTKHSLNVSTTAGIVMW 174


>gi|260902542|ref|ZP_05910937.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308109724|gb|EFO47264.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
          Length = 227

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ AI+R+A A    G+       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAIIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  ETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + M G++++LNVS A+AV LY  Q
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQ 161


>gi|325299402|ref|YP_004259319.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324318955|gb|ADY36846.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 178

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   HNIGA+ R++ AF  D I      +      + K+A GA   + +    
Sbjct: 28  LVVVLDDVRSLHNIGAVFRTSDAFLVDCIYLCGITATPPHPEMHKTALGAEYTVDWKYFQ 87

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           +  DA+ ++ + G+    +       L  ++    + K A++LG E KG++ +       
Sbjct: 88  HTEDAVNELRTMGYTLFAIEQCEGSILLDKLVLEPDKKYAVVLGNEVKGVKQEVVNLCDG 147

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 148 CIEIPQFGTKHSLNVSVTAGIVIW 171


>gi|332159669|ref|YP_004296246.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318603765|emb|CBY25263.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325663899|gb|ADZ40543.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860934|emb|CBX71212.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           W22703]
          Length = 219

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A R   L + L+ V+ PHN+ AI+R+A A    GI       P+ +      SA+G+   
Sbjct: 3   ATRQPDLTVCLEEVHKPHNVSAIIRTADAV---GIHQIHAIWPTPAMYTRLSSAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +     S++TDA+  + S G Q +      K    +EI   +   +++G E  G+  +  
Sbjct: 60  VQVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 120 AMADKDIIIPMIGMVQSLNVSVASALILYEAQRQ 153


>gi|313906489|ref|ZP_07839823.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
 gi|313468679|gb|EFR64047.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
          Length = 263

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 66/141 (46%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VL+ + DP N+G I+R+A      GI  + + +      + +S  G++  +P+IR  
Sbjct: 115 LILVLEDLQDPGNLGTIIRTAEGAGVTGIFMSNKTADPFQPKVIRSTMGSIYRVPFIREE 174

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L   L  +              +    QE      A ++G EG GL  +    A  +  
Sbjct: 175 DLCARLDWLREREVYAYAAHLKGENSYNQEDYRKGTAFLIGNEGNGLSDQLAGKAAHLIR 234

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + AAA+ +Y
Sbjct: 235 IPMEGQVESLNAAVAAALLMY 255


>gi|332299307|ref|YP_004441228.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176370|gb|AEE12060.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 184

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++LD+V   HN+G+I R+A AF  + ++           ++ K+A GA E +P+  + 
Sbjct: 27  LTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHPLIHKTAIGAEEAVPWRHLD 86

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK-PL-EQEIKNDKIA-LILGAEGKGLRPKTQETATS 250
           +  + L++  + G   + L    +  PL  Q   +D+ A LI+G E  G+  +  + A  
Sbjct: 87  SAIEFLEQCRAAGRTILALEQTHQSIPLGNQPALDDRGAVLIVGNEVHGISDEVIQYADY 146

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS A  +A+Y
Sbjct: 147 CLEIPQYGTKHSLNVSVATGIAIY 170


>gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
 gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
          Length = 186

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L++VLD V   HN+G++ RS+ AF  + I      +   +A + K+A GA + + +
Sbjct: 21  RKMPLIVVLDDVRSLHNVGSVFRSSDAFRVEAIYLCGITATPPNAEIHKTALGAEDSVDW 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-----------SDSKKPLEQEIKNDK-IALILGAEG 237
                  +A++++ + G+    +            S    P+  E  ++K  A++LG E 
Sbjct: 81  QYFPTTEEAIEQLKANGYYVYSVEQVEGSTKLQTLSQQVAPITSEQTSEKRYAVVLGNEV 140

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           KG++    + + +   +   G   +LNVS  A + ++
Sbjct: 141 KGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIW 177


>gi|302864970|ref|YP_003833607.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302567829|gb|ADL44031.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 275

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++V D    P NIG ++RSA AF   G+I T   +        ++ +G+L  +P +R
Sbjct: 117 AMLVVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVR 176

Query: 192 I---SNLTDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +    ++ D +  + + G    Q IG        + +        L++G E  GL    Q
Sbjct: 177 VPSHRDVLDWVAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQ 236

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E +  M  + + G   +LN + A  VALY
Sbjct: 237 EASDRMVRIPIVGAASSLNAAAAGTVALY 265


>gi|170016763|ref|YP_001727682.1| rRNA methylase [Leuconostoc citreum KM20]
 gi|169803620|gb|ACA82238.1| rRNA methylase [Leuconostoc citreum KM20]
          Length = 257

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 24/235 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            L G H V  A+   + K   ++AT+  +A  L+   ++PH  P   V  +    I G  
Sbjct: 31  LLDGWHLVEEAIKAKA-KFHAVMATEAQMAEHLN---DVPHGVPAFEVSEEVAKHIAGTN 86

Query: 109 AVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---- 163
              QG+  E + L   T D    +    + LD++ DP N+G ++R+A A    G++    
Sbjct: 87  -TPQGIFAEIS-LPDKTFDPTYVHDGAWLFLDNIQDPGNVGTLVRTADAAGFRGVVLGTG 144

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDAL--QKMHSWGFQTIGLSSDSKKP 219
           T   YSP     + ++  G+  H+  +   +   TDAL    +  +G Q     +++ K 
Sbjct: 145 TADAYSPK----VVRAMQGSQFHLEILNGDLHEWTDALTANGLPVYGSQL----NEAAKS 196

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + + ALI+G EG+G+     +  T+  ++ + G  ++LNV+ A  + ++
Sbjct: 197 YRTIQPSTQFALIVGNEGQGMAESLADKTTANLYIPIQGQAESLNVAIAGGILMF 251


>gi|167563173|ref|ZP_02356089.1| RNA methyltransferase, TrmH family protein [Burkholderia
           oklahomensis EO147]
 gi|167570356|ref|ZP_02363230.1| RNA methyltransferase, TrmH family protein [Burkholderia
           oklahomensis C6786]
          Length = 262

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 21/258 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +     L G+H  SA L+   +     + T  ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDTAGQPEL-CVVTDGALAHAEAR 65

Query: 85  ANLPHPFPVK--TVPPQTIDKIVGKEA-VHQGLAL-----ETAPLLSPTLDAVRNSQLLM 136
             +    P +  T+P    D + G+ + V  G+ L       AP L       R     +
Sbjct: 66  EIVGRVEPARLVTLP----DALFGQLSNVVNGVGLLLLVERPAPALPE-----RVVDTSV 116

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V D  N+G+ILRSA A     +      + + S+ + +SA GA  H   + I    
Sbjct: 117 VLDGVQDAGNVGSILRSAAAAGVQQVFCAPGTAYAWSSKVLRSAMGA--HF-LLDIHEDV 173

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           D    +           S   + ++    +  +  + G EG G+  + ++ AT    +  
Sbjct: 174 DVDTLIERLAVPVALTDSHGARAIDDCDLSGPVVWVFGNEGAGVSARWRDAATHRVTIPQ 233

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNV+ AAA+ L+
Sbjct: 234 PGGMESLNVAAAAAICLF 251


>gi|298571690|gb|ADI87842.1| hypothetical protein AKSOIL_0334 [uncultured bacterium Ak20-3]
          Length = 272

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 24/187 (12%)

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +KIV ++++  G+ L   P L    D  V+ +  L++++ V  P N+GA+LR+A    
Sbjct: 86  CFNKIVVRQSL-DGIVLVMKPKLKALEDFPVKQNPFLLLIESVEKPGNLGALLRTADGSG 144

Query: 159 CDGIITTKR----YSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLS 213
            DG++  +     Y+P+    + +S+ G    +P    S     A  K          LS
Sbjct: 145 VDGVLVLESQIDLYNPN----VIRSSLGCCFSLPIAMCSREEAYAFCKERKIAIHAAVLS 200

Query: 214 SDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + S       +  D +      A++LG+E KGL P     A  +  + M G   +LNVS 
Sbjct: 201 NAS-------VYYDTVNYPSSTAILLGSEDKGLDPYWVSHANHLISIPMHGEADSLNVSA 253

Query: 268 AAAVALY 274
           A AV LY
Sbjct: 254 AGAVLLY 260


>gi|260892439|ref|YP_003238536.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
 gi|260864580|gb|ACX51686.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
          Length = 266

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+++D + DP N+G I+R+A A +  G++  K           ++ +GA+  +P ++  
Sbjct: 117 LLVIVDGLQDPGNLGTIVRTAQAVAATGVVVLKGSVDPFHPRAVRATAGAIFRLPVVKGP 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  + L  + + G + +      + P          AL++G+EG G  P    T     +
Sbjct: 177 SAEEVLPLLRTAGIELVVADPRGEVPFYAHSFLGPTALVIGSEGGGPGP-VWSTLARRVY 235

Query: 254 LHMPG 258
           + MPG
Sbjct: 236 IPMPG 240


>gi|229543606|ref|ZP_04432666.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
 gi|229328026|gb|EEN93701.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
          Length = 251

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +++D V DP N G ++R+A A   D +I  K  +   S  + ++A G+  H+  ++  +L
Sbjct: 108 LLIDAVQDPGNTGTMIRTADAAGFDAVIFGKGTADPYSPKVLRAAQGSHLHVGLLK-GDL 166

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++K++       G + ++     +    D  A+++G EG G+ P     A +  +L 
Sbjct: 167 NMWIEKLNEAAVPVYGTALENGVTFREVNPGDAFAILVGNEGSGVHPDL--LAQTEQNLS 224

Query: 256 MP--GIIKALNVSNAAAVALY 274
           +P  G  ++LNV+ AA + +Y
Sbjct: 225 IPIFGKSESLNVAVAAGILMY 245


>gi|29839982|ref|NP_829088.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
 gi|29834329|gb|AAP04966.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
          Length = 265

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
             ++++ V  P N+GAILR A     DG+I        Y+P+    + +S+ G +  +P 
Sbjct: 117 FYLIIEQVEKPGNVGAILRIADGVGADGVILCDPIVDLYNPN----VIRSSLGTVFTLP- 171

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  + L + LQ +    +Q    S  +      E  N  +AL+ G+E  GL     +   
Sbjct: 172 IWSATLDEVLQTIAEEKWQVFATSPRASTMYFCENYNQPLALVFGSEKDGLTSHWLKGNF 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +   L M G + +LN+S A +   Y
Sbjct: 232 AKISLPMLGQVDSLNLSTAVSAVAY 256


>gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
          Length = 273

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 27/252 (10%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHP----FP 92
           K R TSQ    F  G   V  AL    R  KIF   A  +   R   +  +        P
Sbjct: 20  KGRKTSQ--QFFAEGRRFVGEALMRSKRIEKIFYCPAKGSTWEREKLEELILEAGKLRIP 77

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + V    + +I   E     LAL      S     +    +L++LD + DP N+G ILR
Sbjct: 78  AEEVSEDVMKRISATEEPQGILALINQEEYSWDDIQIEPDTILLILDGIRDPGNLGTILR 137

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF----- 207
           +++A     ++ T+      +  + +S+ GA+  +  ++       +++   W F     
Sbjct: 138 ASLAAGVKNVVLTRGTVDYYNPKVLRSSMGAVFSMCILQ------EIERPDIWAFCRQNH 191

Query: 208 -----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +   S  ++ ++Q +    +AL++G+E  G+ P+  E +     + M   +++
Sbjct: 192 LNLVVSALEGQSVYRQKMDQSL---PLALVIGSEANGVAPEFSEISPKKIMIPMQNNVES 248

Query: 263 LNVSNAAAVALY 274
           LN + AA + L+
Sbjct: 249 LNAALAAGILLF 260


>gi|315501253|ref|YP_004080140.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315407872|gb|ADU05989.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 275

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++V D    P NIG ++RSA AF   G+I T   +        ++ +G+L  +P +R
Sbjct: 117 AMLVVVFDRPKTPGNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVR 176

Query: 192 I---SNLTDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +    ++ D +  + + G    Q IG        + +        L++G E  GL    Q
Sbjct: 177 VPSHRDVLDWVAAVRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQ 236

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E +  M  + + G   +LN + A  VALY
Sbjct: 237 EASDRMVRIPIVGAASSLNAAAAGTVALY 265


>gi|219127773|ref|XP_002184103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404334|gb|EEC44281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 389

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ LD + D  N+G+++R A AF    ++ +K           + + G +  IP +R+ N
Sbjct: 233 LLALDGICDTANLGSVVRCASAFGVHAVLLSKDCCDPWYRRAVRVSMGHIFRIPCVRVDN 292

Query: 195 LTDALQKMHSWGFQTIGLSS--DSKKPLEQE-IKNDKI----ALILGAEGKGLRPKTQET 247
           L  AL  +    F     ++  D +  L  E I    I      I+G+EGKG+     + 
Sbjct: 293 LVQALTALSQEPFAVTSYAAVIDPRADLLLENIAQGAIPKSWCCIVGSEGKGISCDVIQA 352

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           AT+   + M   + +L+V  A  + L+
Sbjct: 353 ATTTLRIGMYDHVDSLSVPVATGILLH 379


>gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
           17678]
 gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
           17678]
          Length = 256

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 1/139 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G I+R+A A   D I   K      +  + +SA G+  ++  I + +
Sbjct: 110 VLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVYNPKVVRSAMGSGFYMD-ILLES 168

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
               L  +   G Q +  S D+    ++    D  AL+LG E  G+     E +  +  +
Sbjct: 169 QEVILSILKGAGLQIVSSSLDTDNYYDEVTYADGCALVLGNEANGINDFWIENSDLLVKI 228

Query: 255 HMPGIIKALNVSNAAAVAL 273
            M G  ++ NV+ +AA+ +
Sbjct: 229 PMYGKAESFNVAISAALLM 247


>gi|255532027|ref|YP_003092399.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
 gi|255345011|gb|ACU04337.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
          Length = 176

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   HNIG++ R+A  F+ + +      +      + K+A GA + + +    
Sbjct: 25  LIVVLDNVRSMHNIGSVFRTADGFAIEKLYLCGITARPPHREIEKTALGATQSVAWAHFE 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250
              DA+  + + G+  IG+   +   +    K   + K ALI G E  G+  +       
Sbjct: 85  TTVDAIASLKADGYHIIGIEQAAGSTMLNTYKPTYSKKYALIFGNEVNGVSDEVMAQIDE 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   + N+  +A + L+   + FAK
Sbjct: 145 CIEIPQFGTKHSFNIVISAGIVLW---DFFAK 173


>gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 180

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 70/142 (49%), Gaps = 3/142 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD +   +N+G++ R+A AF  +G+      +      + K+A GA + + +   S++
Sbjct: 27  IILDDIRSMNNVGSVFRTADAFRLEGLCLCGITARPPHPDIHKTALGAEDSVKWEYFSSV 86

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMA 252
            DA++++ + G+    +  ++    LE     K  + ALI G E KG+R +  +      
Sbjct: 87  VDAIEELKAKGYSICAIEQAEGSLSLENFSPSKGTRYALIFGNEVKGVRQEAIDLCDLCL 146

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            +   G   +LNVS  A + ++
Sbjct: 147 EIPQFGTKHSLNVSVTAGIVIW 168


>gi|225019250|ref|ZP_03708442.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
           DSM 5476]
 gi|224947881|gb|EEG29090.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
           DSM 5476]
          Length = 259

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSASGA 183
           D +++    + L    DP NIG ++R+A A   DG++   T   YSP     + +S  G+
Sbjct: 108 DTIKSGGCYLALCSTQDPGNIGTMIRTADALGIDGVLLHNTCDIYSPK----VVRSTMGS 163

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L  + +    +L      +++ G  T     +   P+ +   +    L +G EG GL   
Sbjct: 164 LFRMRFALCPDLLGLTASLNACGVDTCAAVVEDALPVTRASFSGPRVLYIGNEGNGLPDS 223

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     + M G  ++LN ++AAA+ ++
Sbjct: 224 IAFACARRITIPMRGNAESLNAASAAAILMW 254


>gi|227892813|ref|ZP_04010618.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227865454|gb|EEJ72875.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 255

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG++ +   +   +    ++  G+  HI  I+  +L
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172

Query: 196 TDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +               D K K L+   K  ++ALI+G E  G+            ++
Sbjct: 173 ADVITDFQDVAIPVYASMLDKKAKQLQDFAKVPQLALIIGNEAHGVSSTIASLCDEKLYI 232

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            + G  ++LN + AA + +Y    HFA
Sbjct: 233 PIKGKAESLNAAVAAGIMIY----HFA 255


>gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 235

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK--SASGALEHI 187
           R + L + L++V+ PHN+ A++R+     CD +   + ++  E     +  +A G+ + +
Sbjct: 16  RQTDLTVCLENVHKPHNVSAVVRT-----CDAVGIHRVHTVWEKKYQFRRGTAMGSQQWV 70

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 N+ DA+ ++   G Q +    SD+             A++ G E  G   + + 
Sbjct: 71  RQTNHDNINDAMAELKGQGMQVLVTHLSDTAVDFRDIDYTKPTAILFGQEKYGASDEAKA 130

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS AAA+ LY  Q  
Sbjct: 131 IADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQ 163


>gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
 gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
          Length = 182

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 24/163 (14%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ RSA AF  + I      +   +A + K+A G  + + +    
Sbjct: 25  LIVVLDDVRSLYNVGSVFRSADAFRIEAIYLCGITATPPNAEIHKTALGGEDSVDWKYFE 84

Query: 194 NLTDALQKMHSWG--------------FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
              DA++ +H  G                T+ L+++S         N   A+I+G E KG
Sbjct: 85  RTEDAVEDLHKKGVFVYSVEQVEHSTKLHTLDLNAESTT------NNSHYAIIMGNEVKG 138

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           ++    + + +   +   G   +LNVS  A + ++     FAK
Sbjct: 139 VKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIW----EFAK 177


>gi|255075481|ref|XP_002501415.1| predicted protein [Micromonas sp. RCC299]
 gi|226516679|gb|ACO62673.1| predicted protein [Micromonas sp. RCC299]
          Length = 338

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 23/189 (12%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           Q++D++   +AV +   L   P++    L+       L+ LD + DP N+G ++R+A+A 
Sbjct: 162 QSVDRV---DAVAE---LSMPPVVGVAALEGAGRITRLLALDGIQDPGNLGTLVRTALAL 215

Query: 158 SCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
             D + +      P     L ++A G +  +P  R++   + L+++     +  GL    
Sbjct: 216 GWDAVALLPGTCDPYNDKAL-RAARGGVFRMPMARLT--WEELEEVT----RRDGLQRFC 268

Query: 217 KKP-------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            +P             +  + L+LG+EG+GL      T   +A + MPG +++LNV+ A 
Sbjct: 269 AEPTADATAADTAATGSKGLCLVLGSEGQGLSDVALRTCEPVA-IPMPGEMESLNVAVAG 327

Query: 270 AVALYITQN 278
            + LY+ + 
Sbjct: 328 GILLYLMRR 336


>gi|299769111|ref|YP_003731137.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
 gi|298699199|gb|ADI89764.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
          Length = 258

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 15/228 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVG 106
           L G H     L    +KIF L  T+ AL   D     + +  H F +  V  + +  +  
Sbjct: 35  LEGTHLCLTWLQQ-QKKIFSLFTTEQALEHTDLKKIIELHQGHIFVISEVLYRDLSTLGT 93

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  LA+   P  + T+D   ++   ++L+++ DP N+G +LRSA A +   II T+
Sbjct: 94  SLPC---LAIIDLPKTASTIDYKVDT---LILENIQDPGNVGTLLRSAAAANIKQIICTQ 147

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   S  + ++  GA   +       LTD L K     F T   SS     L  +  +
Sbjct: 148 GSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFPIPVFVT---SSHRSTSLYSKDLS 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ILG EG+G      + A S+  +  PG  ++LNV+ A ++  +
Sbjct: 205 KPCVWILGNEGQGASDYALDHAESVT-IPQPGGQESLNVAIAGSICFF 251


>gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_00602 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685474|gb|ADK28396.1| hypothetical protein cpfrc_00602 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205744|gb|ADL10086.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330299|gb|ADL20493.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308275979|gb|ADO25878.1| Putative methyltransferase [Corynebacterium pseudotuberculosis I19]
          Length = 290

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 15/203 (7%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           A L    PV ++  +T+  + G + +H+GL  A +    LS   +AV  ++ + +L+ V 
Sbjct: 83  AELVRDIPVYSLDRETLASVAGFD-MHRGLLAAADRVAGLS-IEEAVSTARTVAILEGVG 140

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDA 198
           D  NIG++ R+A     D I+     +      + + + G +   P+       +     
Sbjct: 141 DHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRTPFAHFGGKRTTWQRE 200

Query: 199 LQKMHSWGFQTIGLSSDSKKP-LEQEIKN------DKIALILGAEGKGLRPKTQETATSM 251
           L+ + + GF  + L+   +   L   + +      DK+AL++GAEG GL           
Sbjct: 201 LEGLKAAGFHLVSLTPHPEAVHLADALVDATGQPYDKVALLVGAEGPGLTEHAMRATDVR 260

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
           A + M     +LN++ +AA+A Y
Sbjct: 261 ARIPMAPGTDSLNLATSAAIAFY 283


>gi|226366171|ref|YP_002783954.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226244661|dbj|BAH55009.1| rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 282

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 116/266 (43%), Gaps = 26/266 (9%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           RN R +++ QS+       ++     + GV  ++ AL++    I  LL   +     DW 
Sbjct: 20  RNAR-FQQWQSYLTNRAKRTKAGRFLIQGVRPLNLALDH-DWPIESLLHRIDGPPLSDWA 77

Query: 85  ANLPHPFPVKTVPPQTIDKI-VGKEAVHQ-GLALETAPLL-------SPTLDAVR--NSQ 133
             L        +  +++++I V  E + + G   +TAP L        P L  +R  ++ 
Sbjct: 78  REL--------LASRSVEQIGVSAELMAELGEKTDTAPELIAVAKTRVPRLKELRLQSAP 129

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V D    P N+G ++RSA AF  D ++     +        ++++G+L  +P + +S
Sbjct: 130 LVVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVS 189

Query: 194 NLTDAL-----QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           ++ + L     ++        +G        ++         L++G E +G+    +   
Sbjct: 190 SVDEILAFRDARRASGTELHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRNAC 249

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ ++ + G   +L   +A AVALY
Sbjct: 250 DTVVNIPIGGAASSLGAPSAGAVALY 275


>gi|170077725|ref|YP_001734363.1| rRNA methylase [Synechococcus sp. PCC 7002]
 gi|169885394|gb|ACA99107.1| rRNA methylase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 262

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIR 191
           QL + ++ + DP N+G I+R+A A + DG++ +    +PS   VL  S     +  P + 
Sbjct: 109 QLGVAVERLQDPGNLGTIIRTATATTVDGLLLSHDSVNPSNPKVLRASVGAWFQTTPVV- 167

Query: 192 ISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           I    + LQ+  + G Q +  L   +K   + + +   + ++LG EG GL P     A  
Sbjct: 168 IPTFAEQLQRYRAQGVQIVATLPQATKTYWDVDWRQPSL-ILLGNEGAGLSPAIASLANE 226

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M   +++LNV+ A A+ LY
Sbjct: 227 TVQIPMGPGVESLNVAIACALMLY 250


>gi|86605783|ref|YP_474546.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86554325|gb|ABC99283.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-3-3Ab]
          Length = 270

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSAS 181
           SP  +A+R   L +V++ + DP N+G+++R   A   DG+ ++     P    VL  SA 
Sbjct: 107 SPPPEALR---LGLVVETLQDPGNLGSLIRVVAATGADGLWLSADSVDPENPKVLRASAG 163

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEG 237
                 P + +S+L   +Q     G Q +   + +  PL     +  +      +LG EG
Sbjct: 164 QWFRRPPQV-LSDLPAWIQSCRRQGIQVL---AATLAPLATCYWDHDLTRPTLFLLGNEG 219

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL+  T + A +   + M   +++LNV+    + LY
Sbjct: 220 AGLQESTIQLADAQVRIPMAAGVESLNVAMTGGLLLY 256


>gi|296269772|ref|YP_003652404.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296092559|gb|ADG88511.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 184

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 3/130 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +++L ++L+ V  P N+G++ R+A AF    I      +P       K+A G    + + 
Sbjct: 27  HNRLGLILESVTGPFNVGSVFRTAAAFGVAAIRLAGNATPPTHPKAQKTALGTDRLVEWH 86

Query: 191 RISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +T A+  M   G++ +   ++ D+    E ++  D + L+LGAE  G+ P   E A
Sbjct: 87  APVPVTQAIAAMREDGYRIVAVEITGDAVPIYEADLDGD-VCLLLGAEEHGVSPAALEAA 145

Query: 249 TSMAHLHMPG 258
            S+ ++   G
Sbjct: 146 DSVVYIPQVG 155


>gi|188994636|ref|YP_001928888.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594316|dbj|BAG33291.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 254

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 15/149 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGALEHIPY 189
           L ++LD V DP N+G ILR+A  F       G  +   +SP     + +++ GAL  +  
Sbjct: 101 LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPK----VVQASMGALARVQP 156

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK---- 243
             + N  D L      G    G   + +   E  + N  +   L+LG+EG G+ P+    
Sbjct: 157 TPLKNTVDTLAYFRRQGIPVYGAFLEGQSLYEAPLPNFTEPAILVLGSEGHGISPEVAAE 216

Query: 244 -TQETATSMAHLHMPGIIKALNVSNAAAV 271
            T       + L + G  ++LNV+ A A+
Sbjct: 217 ITDRLTIPASGLSVKGHTESLNVAIATAI 245


>gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
          Length = 233

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 5/150 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R   L + LD V+  +NI A+LRSA    C GI       P +   V   +ASG+ + + 
Sbjct: 16  RQVDLTVCLDKVHMTNNIAAVLRSA---DCVGIHQIHAVWPDDDMRVSGNTASGSQQWVD 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            ++     +A Q       Q +  + SDS     +       A+++G E  G+  +    
Sbjct: 73  TVKHYTFEEAHQAFKKQKMQVLTTTFSDSAVDFREIDYTQPTAIVMGNERDGVSAEAIAA 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A     + M G++++LNVS AAA+ +Y  Q
Sbjct: 133 ADQHIIIPMRGMVQSLNVSVAAALVMYEAQ 162


>gi|34396174|gb|AAP55640.1| rRNA methylase [Spiroplasma citri]
 gi|110004355|emb|CAK98693.1| putative rrna methyl transferase protein [Spiroplasma citri]
          Length = 262

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 74/147 (50%), Gaps = 5/147 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +Q +++L+++ DP N+G ++R+ + F    II         +  + +++ GA+  +  I+
Sbjct: 108 NQNILLLENIQDPGNVGTLIRTGLGFGFTNIILYNHTVDLFNDKVLRASQGAIFKVA-IK 166

Query: 192 ISNLTDALQ-KMHSWGFQTIGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +NL +    +++ +   T GL   S   +    Q  +N++  L LG EG GL    QE 
Sbjct: 167 EANLIEIKNFQLNRYKIITTGLKRQSVFLQDCHCQFKQNERYILALGNEGHGLSTTLQEI 226

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + +   +++LNV+ A  + +Y
Sbjct: 227 SDYNVQIKINSQLESLNVAQAGTILMY 253


>gi|297198395|ref|ZP_06915792.1| rRNA methylase [Streptomyces sviceus ATCC 29083]
 gi|297147074|gb|EFH28473.1| rRNA methylase [Streptomyces sviceus ATCC 29083]
          Length = 260

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 4/120 (3%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P PV  V P+  +++ G   VH+G   +++  PL +   + ++ ++ +++++ VND  NI
Sbjct: 76  PAPVYAVSPELAEQVTGYH-VHRGALASMQRKPLPT-AAELLQTARRVVIMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+     +L  +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPKSLDSVREAGF 193


>gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 216

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 12/156 (7%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVL---AKSASGALEHIPY 189
           L ++LD V+   N+ AILR+     CD + +    Y+ S++  L        GA   +  
Sbjct: 28  LKVMLDDVHSSQNLSAILRT-----CDAVGVQHLYYTTSDNRDLRIHKTITQGAHRWVER 82

Query: 190 IRISNLTDA--LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
            RIS       LQK    G+Q +    + +    +E+   K   +++G E  G+  +T E
Sbjct: 83  TRISTEEQRVFLQKKQKEGYQVVVTHLEERAVPFREVDYTKPTIIVMGNEKDGVSSETVE 142

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A ++  + M G++++LNVS AAA+ LY  +   A+
Sbjct: 143 LADTVIIIPMQGMVQSLNVSVAAALILYEAERQLAE 178


>gi|254411771|ref|ZP_05025547.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
 gi|196181493|gb|EDX76481.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
          Length = 306

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 4/143 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL+ + DP N+G I+R+A A   DG+  +      E+  + ++++G    +P    +
Sbjct: 152 LGLVLETLQDPGNLGTIIRTATAAGVDGLWLSPDSVDLENPKVLRASAGQWFRLPISANA 211

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPKTQETATSM 251
           NL+  +++  + G Q +  ++  K PL     + +I   ++LG E  GL  +    A   
Sbjct: 212 NLSQVVRQSQAQGVQVV--ATLPKAPLSYWEIDWRIPTLILLGNEAAGLSSELTVLADQA 269

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + +   +++LNV+ AAA+ +Y
Sbjct: 270 VQIPLGQDVESLNVAIAAALIVY 292


>gi|116073360|ref|ZP_01470622.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
 gi|116068665|gb|EAU74417.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
          Length = 284

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 17/151 (11%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191
            ++ LD + DP N+G +LR+A+A   + +       P    V+ +S++GA+  +P  R  
Sbjct: 116 FVLALDRIQDPGNLGTLLRTAMAADVEMVWQGSGADPLNPKVV-RSSTGAVLKLPLHRFG 174

Query: 192 ------ISNLTDALQKMHSWGFQTIG-LSSDSKKPL------EQEIKNDKIALILGAEGK 238
                 I+ L   L +    G Q +  L   +  PL      E + +   + L+LG EG+
Sbjct: 175 PAEAAGITELKQTLHQARDRGLQVVATLVPGAGGPLSVVPYWELDWRLPTV-LVLGNEGR 233

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           GL P+  +  T    L     +++LNV++AA
Sbjct: 234 GLHPELLDCCTHGVTLPHSPAVESLNVASAA 264


>gi|291456412|ref|ZP_06595802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Bifidobacterium breve DSM 20213]
 gi|291381689|gb|EFE89207.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Bifidobacterium breve DSM 20213]
          Length = 292

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTD 197
            V DP N G ++R+A A  CD +I         +  + +S +G+L H+P   +R +   D
Sbjct: 138 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVFTMRTNEFFD 197

Query: 198 ALQKMHS--WGFQTIGLSSDSKKPLE-QEIKNDKIAL------ILGAEGKGLRPKTQETA 248
                H   W     G  ++ +KP     +  DK A+      + G E +GL P+  E  
Sbjct: 198 WTSDHHVDVWAADVYG--TEKRKPESLPAVLADKAAVSMSQAVLFGNEARGLEPEILERC 255

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
             +  + + G  ++LN+  +AAV L
Sbjct: 256 GRIVSIPLYGKAESLNLGTSAAVML 280


>gi|124026423|ref|YP_001015538.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
 gi|123961491|gb|ABM76274.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
          Length = 278

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 15/150 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD + DP N+G + RS +A   + +       P    VL +S++G++ H+P+ RI +
Sbjct: 111 ILALDRIQDPGNLGNLFRSGLAGEYEVMWLASGADPLNQKVL-RSSAGSVLHMPFERIGH 169

Query: 195 --------LTDALQKMHSWGFQTIGLSSDSK------KPLEQEIKNDKIALILGAEGKGL 240
                   L   L       +Q +G  S +K      KP  +   +    L+LG EG G+
Sbjct: 170 SSSSSIEMLVSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGV 229

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               +   T    L    ++ +LNV++AA 
Sbjct: 230 HASIEACCTDFVTLPHSSLVDSLNVASAAV 259


>gi|119484369|ref|ZP_01618986.1| spoU protein [Lyngbya sp. PCC 8106]
 gi|119457843|gb|EAW38966.1| spoU protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 123 SPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKR--YSPSESAVL 176
           S  ++AV   R  QL ++L+ +  PHN  A LR+  +F    + I   R  +  +    L
Sbjct: 22  SQKIEAVVQQRTRQLTVILEDIYQPHNASACLRNCDSFGVQDVHIIENRNDFDLNREVSL 81

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGA 235
                  +      +I+N    L+K+ S G++ +  +  + +  +EQ    +K+ L+ G 
Sbjct: 82  GSHRWLTISRYNEPKINNTKICLEKLKSQGYKIVATTPHEEEITIEQISVEEKLGLMFGT 141

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E  GL       A  +  + M G  ++ N+S + A+ LY
Sbjct: 142 ELNGLSDDAVSQADYLVRIPMVGFSESFNISVSVALCLY 180


>gi|331697623|ref|YP_004333862.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952312|gb|AEA26009.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 279

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 4/146 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL+ VL  V DP N+G ++R A A   D ++         +    ++++G++ H+P  R 
Sbjct: 113 QLVAVLVGVADPGNVGTVVRCADAAGADAVLLAGDTVDPHNGKAVRASTGSVFHLPLARD 172

Query: 193 SNLTDALQKMHSWGFQTIGLSS----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L    + G   +   +    D   P    +   ++A + G E  G+  +    A
Sbjct: 173 RDAGAVLAACRAAGLVLLAADAHGELDLHDPAADAVLGGRVAWVFGNEAHGVPDEVLAAA 232

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + + G  ++LN++ AAA+ LY
Sbjct: 233 DHRVSVPIHGRAESLNLATAAAICLY 258


>gi|42522737|ref|NP_968117.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
 gi|39573933|emb|CAE79110.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
          Length = 238

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           A+RN    +VL+ + D  NI A++RSA  + F    +I T+      + V      GA +
Sbjct: 42  ALRNFDTAVVLEGIYDRGNISAVMRSAEGLGFGNFHVIETQEKFKEANRV----TQGADK 97

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKT 244
            +   +     D ++ + + G++      D+  KPL +   + K AL+LG E  G+ P+ 
Sbjct: 98  WVEVKKWKKTADCVKALKNQGYKIYVTHLDANAKPLHEIDFSGKTALVLGNERDGVTPEM 157

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
              A     + M G +++ N+S A A+ LY I+Q+   +
Sbjct: 158 IAAADQTIIIPMTGFVQSFNISVAGALGLYHISQDRLKR 196


>gi|294656094|ref|XP_458335.2| DEHA2C14982p [Debaryomyces hansenii CBS767]
 gi|199430853|emb|CAG86415.2| DEHA2C14982p [Debaryomyces hansenii]
          Length = 426

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 120/328 (36%), Gaps = 82/328 (25%)

Query: 25  RNHRDYKKMQSF-----NQKSRHT-SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           R +R ++K + F     N+  R     P + ++YG   V AAL    R  F  L T N  
Sbjct: 97  RQYRKHEKEERFSRFGGNRDFRQAFKNPLSEYVYGTFPVMAALMANKRGSFNKLITHNPK 156

Query: 79  ARLDWDANLPHPFPVKTVPPQTID--KIVGKEAVHQGLALETAPLLSPTLD--------- 127
                   L   + ++     + +   ++    VH G+ LET PL  P +          
Sbjct: 157 ESSGEIFKLAKRYGLRIDRKDSKNDLNVLSDNGVHNGIVLETKPLELPIISTLGECDPEL 216

Query: 128 ---------------------AVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFS 158
                                 VRN          L + LD + DP NIGAI+RSA    
Sbjct: 217 GTYKVSIVNDLYNTEVQKSEPVVRNFSDESSSKYPLGIYLDGITDPQNIGAIVRSAYYLG 276

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D I+     +     V  K+++G+L+      I    D+L+ + S       + + S K
Sbjct: 277 ADFIVVPDHETARLGPVANKASAGSLD---LTSIYQTVDSLRFVESVKNNGWNVITTSAK 333

Query: 219 P--------------LEQEIKN--------------DKIALILGAEGKGLRPKTQETATS 250
           P              +E+ +KN                I LI+G+EG G+R   +  +  
Sbjct: 334 PNHDELHDLKSKHEKVEEHLKNKFIEVDELSSMMAQSPILLIMGSEGAGVRTNLKLKSDY 393

Query: 251 MAHLHMP-----GIIKALNVSNAAAVAL 273
           +  L         I+ +LNVS A  + +
Sbjct: 394 LVGLDKGRRLGVDIVDSLNVSVACGLLI 421


>gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 223

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185
            R   L ++++ VN PHN+ AILR+     CD  G+      S + +      +A G+ +
Sbjct: 17  CRMQNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
            +      N   A+  + + GF+  G + +S+    +    +     +LGAE  GL  + 
Sbjct: 72  WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSKEI 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS AA++ L+
Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLF 161


>gi|255626589|gb|ACU13639.1| unknown [Glycine max]
          Length = 218

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +V+ ++   HN+G + RSA AF    +I   R   +        + G+  H+ +    +
Sbjct: 6   FVVVHNIAKRHNVGTLARSATAFGVSELILVGRRDFN-----CFGSHGSSSHLRFRHFHS 60

Query: 195 LTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L DA + +    F   G  +++DS  P+ Q       A +LG EG GL PK  E      
Sbjct: 61  LQDARKFLKDKDFDICGVEITTDS-LPVNQHPFTKSTAFLLGNEGTGLSPKEIEICGFFV 119

Query: 253 HL-HMPGIIKALNVSNAAAVALY 274
           ++    G   +LNV+ AA++ L+
Sbjct: 120 YIPQYGGGTASLNVTVAASIVLH 142


>gi|17546138|ref|NP_519540.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17428434|emb|CAD15121.1| probable trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 259

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 4/140 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +    
Sbjct: 115 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCT 174

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                 ++H      +  SS ++  +     N  +  + G EG G+  +     T ++ +
Sbjct: 175 FESVHARLH---VPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLSVTTPIS-I 230

Query: 255 HMPGIIKALNVSNAAAVALY 274
             PG +++LNV+ AAA+ L+
Sbjct: 231 PQPGGMESLNVAAAAAICLF 250


>gi|145219814|ref|YP_001130523.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205978|gb|ABP37021.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 232

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL---AKSASGAL 184
           A R   L +V+D+VN PHN+ AI+RS     CD +     Y+ S    +     +A+GA 
Sbjct: 15  ASRQPDLTVVMDNVNKPHNLSAIIRS-----CDAVGIHDLYAVSSKKSIHTTQNAAAGAG 69

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243
                    ++    +K+   G Q +  ++  +    + I      A++LGAE +G+  +
Sbjct: 70  RWTNLHLRKDIGTLCRKLGMEGMQVLAATNTEESRDFRTIDFTLPTAIVLGAEWEGVSAE 129

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + A     + M G++++LNVS AAA+ L+
Sbjct: 130 AIQAADMAITIPMYGMVESLNVSVAAALILF 160


>gi|28896932|ref|NP_796537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365880|ref|ZP_05778374.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260877833|ref|ZP_05890188.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260895518|ref|ZP_05904014.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|28805140|dbj|BAC58421.1| tRNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088577|gb|EFO38272.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308089712|gb|EFO39407.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308113480|gb|EFO51020.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|328471708|gb|EGF42585.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 227

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  ETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + M G++++LNVS A+AV LY  Q
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQ 161


>gi|241206031|ref|YP_002977127.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859921|gb|ACS57588.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 274

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 15/197 (7%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-------ETAPLLSPTLDAVRNSQLLMV 137
             P   PV       +D +VG   +H+G LAL       E A      LDA+    L++V
Sbjct: 76  RFPADVPVYVAGADVLDGVVGFH-LHRGVLALGRRQDRGEAA-----LLDALPERALVLV 129

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
              +++  N G++ R+A AF  D ++  +           + + G++  +P+ R     D
Sbjct: 130 GCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALD 189

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L  +   GF    LS   K  +     + ++AL++G EG+GL P+        A +   
Sbjct: 190 VLVALAERGFAIWTLSPHGKTDIRAIPASTRMALVVGTEGEGL-PEALLARFQSARIPQS 248

Query: 258 GIIKALNVSNAAAVALY 274
             + +LN + A  +AL+
Sbjct: 249 EELDSLNAATATGIALF 265


>gi|189501044|ref|YP_001960514.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
 gi|189496485|gb|ACE05033.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
          Length = 267

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 8/113 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHI 187
            +L++ LD V DP N+G ILR+A  F    ++    T  RY+P       ++ +G++  +
Sbjct: 118 GELVLALDDVQDPGNVGTILRTASWFGVSTVVCGPGTADRYNPKA----IRAGAGSVFCL 173

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            +  + +L   L+KM   G+  I  S        Q    ++  L++G E KG+
Sbjct: 174 NHYSVGDLEKELEKMRRAGYHIICSSLHGTDFRLQHAVPERTVLVIGNEAKGV 226


>gi|326569788|gb|EGE19838.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
          Length = 258

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189
           ++LD + D  NIG +LR+A A     +IT+   +   S    ++  GA       EHI  
Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIA- 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                + + LQK+ +  + T   SS + K +        IA +LG EG+G+R +    A 
Sbjct: 173 -----VNEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAI 224

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280
            +A L  PG  ++LNV  A +V  Y  + Q H+
Sbjct: 225 PIA-LPQPGGQESLNVGIAGSVCFYEMLRQRHY 256


>gi|300772007|ref|ZP_07081877.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760310|gb|EFK57136.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 177

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 15/157 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD-----GIITTKRYSPSESAVLAKSASGALEHIP 188
           +++VLD+V   HN+G+  R++ AF+ +     GI  T  +   E   L  ++S   EH P
Sbjct: 25  VVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTALGATSSVDWEHAP 84

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245
                +L   LQK+ + G+Q + +       +  + +   + K A + G E  G+  +  
Sbjct: 85  -----DLVSRLQKLKAEGYQILAIEQAEGSVMLHQFEPSSDQKYAFVFGNEVHGVDEEIM 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280
           + +     +   G   + N+S    + L  ++ +N F
Sbjct: 140 KISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRF 176


>gi|323343642|ref|ZP_08083869.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
 gi|323095461|gb|EFZ38035.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
          Length = 176

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 7/152 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   HN+G++ RS  AF  + +      +   SA + K+A G    + +   S
Sbjct: 25  LVVVLDDVRSLHNVGSVFRSCDAFRVEAVYLCGITATPPSAEIHKTALGGENSVEWKYFS 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
               A++++   G+    +         Q ++ +   K A++ G E KG++    +   S
Sbjct: 85  QTEKAIRQLRLEGYFCYAVEQAEGSVKLQTLRLNRAKKYAVVFGNEVKGVKQTVIDCCDS 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LNVS  A V ++     FAK
Sbjct: 145 CLEIPQLGTKHSLNVSVTAGVVVW----EFAK 172


>gi|237738319|ref|ZP_04568800.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420199|gb|EEO35246.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 255

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 4/140 (2%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPYIRISN 194
           VLD + DP N+G I+R+A A     II TK      +    +S+ G++   +I Y+    
Sbjct: 110 VLDKIQDPGNLGTIIRAADAAGFKDIILTKGSVDCYNEKCVRSSMGSIFNMNIVYMEELQ 169

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L K   + F    L ++S +  +  + ++K A+I G+EG G+     + A     +
Sbjct: 170 LIQFL-KEKKYKFLVTALENNSIEYTDITL-SEKNAIIFGSEGNGVSDNFLKVADETVII 227

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LNV+ A+ + LY
Sbjct: 228 PIYGSAESLNVAMASGIILY 247


>gi|193212564|ref|YP_001998517.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
           8327]
 gi|193086041|gb|ACF11317.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
           8327]
          Length = 221

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 9/154 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAK--SASGALEH 186
           R + L +V+D+VN PHN+ AI+R     SCD +   + ++ S  S++  K  +A+GA   
Sbjct: 17  RQTDLTLVMDNVNKPHNLAAIIR-----SCDAVGIHQVHAISRRSSIRTKQHTAAGASRW 71

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +      ++    +K+   G Q +  +        + I   +  A+++G E  G   +  
Sbjct: 72  VKVGLSDSIVPVGEKIREAGMQILVATYRPDAVDFRSIDYTRPTAIVMGEELTGPSEEAM 131

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A    ++ M G++++LNVS AAA+ L+  Q  
Sbjct: 132 NLADHFVYIPMFGMVESLNVSVAAALILFEAQRQ 165


>gi|189464794|ref|ZP_03013579.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
           17393]
 gi|189437068|gb|EDV06053.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
           17393]
          Length = 175

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +  + 
Sbjct: 25  LMVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  +A+  +   G+    +       +  E+  D   K A+++G E KG++ +  + +  
Sbjct: 85  NCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKYAVVMGNEVKGVQQEVIDHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|73662967|ref|YP_301748.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72495482|dbj|BAE18803.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 246

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N++ ++++D + DP N+G ++R+A A   D I+  K  +      + +++ G++ HIP I
Sbjct: 103 NAKQVLLIDCIQDPGNLGTLIRTADAAGLDLIVLEKGTADPYQDKVMRASQGSVFHIP-I 161

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             + L+  +           G + +      Q    +  AL+LG EG+G+  K     T 
Sbjct: 162 LTTELSGFIADFEG---DVYGTALEDAVVYNQIPSQETFALLLGNEGEGVNDKLLSQTTQ 218

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + + G  ++LNV+ A ++ +Y
Sbjct: 219 NLTIPIYGKAESLNVAIAGSIVMY 242


>gi|67523001|ref|XP_659561.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
 gi|40745966|gb|EAA65122.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
 gi|259487316|tpe|CBF85894.1| TPA: RNA methyltransferase, TrmH family family (AFU_orthologue;
           AFUA_4G13450) [Aspergillus nidulans FGSC A4]
          Length = 617

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 118/308 (38%), Gaps = 86/308 (27%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL-----------ATKNALARLDWDANLPHPFPVKTVPP 98
           F+YG   V AAL    R++++L            A K  L +L    N+           
Sbjct: 195 FIYGTTAVEAALRCCKRQLYKLYLYQTAGEEELSADKRVLRKLALSKNVKVKLAFGEWN- 253

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------------------------ 134
           + +DK+      H G  LE +PL    + A+R  QL                        
Sbjct: 254 RLLDKMSAGRP-HNGCVLEVSPLPRTPIQALRPVQLGDGEFKVELAPQTREEAKVNGTND 312

Query: 135 -----------------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                            +++L+ V D  N+G+I+RSA     D I+   R+S   S V  
Sbjct: 313 CIKINNSYTQQQIRYPVVVLLEGVVDTGNLGSIIRSAYYLGVDAIVFAGRHSAPLSPVTI 372

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIG----------LSSDSKKPLEQEIKND 227
           K+++GA E++  + + N  D +++  + G++             L   + +P    + N+
Sbjct: 373 KASAGAAENMTLLDVQNEVDFIKRSQANGWRFYAADVPKTGATYLEPGALQPPGSAVANE 432

Query: 228 K----------IALILGAEGKGLRPKTQETATSMAHLH----MPGI--------IKALNV 265
                        +++G EG GL    +  A S+  +     +PG+        + +LNV
Sbjct: 433 GHPDALIGQSPSVIMMGYEGSGLSNHIKGRADSIVSIPGARLLPGVGAASDPARVDSLNV 492

Query: 266 SNAAAVAL 273
           S AAA+ +
Sbjct: 493 SVAAALLM 500


>gi|319898202|ref|YP_004158295.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
           clarridgeiae 73]
 gi|319402166|emb|CBI75692.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
           clarridgeiae 73]
          Length = 282

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + + LD V DP N+G I+R+A A    GI      +   S    ++  G++  IP 
Sbjct: 122 RVDDVYIALDRVRDPGNLGTIIRTADAVGAKGIFLIGETTDPFSLETVRATMGSIFSIPL 181

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKT 244
            R +          +W   F+ + + +  K  ++    + KN  I L++G E KGL    
Sbjct: 182 YRCNE-----SAFLNWSTNFKGMIVGTHLKGSVDYRAIDFKNGPIILLMGNEQKGLSDVL 236

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                ++A +   G   +LN++ A A+ LY
Sbjct: 237 ANHCNNLARIPQCGYADSLNLAVATALMLY 266


>gi|153837870|ref|ZP_01990537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|149748733|gb|EDM59578.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
          Length = 231

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  ETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163


>gi|153833892|ref|ZP_01986559.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
 gi|269959394|ref|ZP_06173777.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|148869730|gb|EDL68707.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
 gi|269835831|gb|EEZ89907.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 227

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163


>gi|253584032|ref|ZP_04861230.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251834604|gb|EES63167.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 255

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ +   P +   L+ ++ +  ++VLD + DP N+G I+R A A     I+ TK     
Sbjct: 88  QGVII-IYPYIKGALENLQKN--VVVLDKIGDPGNLGTIIRVADAAGFKDILLTKGSVDC 144

Query: 172 ESAVLAKSASGAL--EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +  + +S+ G++   +I Y+    L  AL K   +      L  +S    + ++  +K 
Sbjct: 145 YNEKVVRSSMGSIFNMNIIYMEEEELI-ALLKKEEYKIVVTALEKNSVSYTQMKLA-EKN 202

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A++ G+EG G+     +       + + GI ++LNV+ A+ + LY T+
Sbjct: 203 AIVFGSEGDGVSQNFLKVCDEKIIIPIYGIAESLNVAMASGIILYKTK 250


>gi|226887998|pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase
           S-Adenosyl-L-Methionine Complex
 gi|226887999|pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase
           S-Adenosyl-L-Methionine Complex
          Length = 272

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 3/186 (1%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV+ +    ++++   E   +   +   P  +   D       ++VLD V    NIGAI
Sbjct: 77  IPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIVGNIGAI 136

Query: 151 LRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +R+++A    GII       S     L +++ G +  +P + +S   +A+  +   G Q 
Sbjct: 137 VRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVV-LSGREEAIAFIRDSGMQL 195

Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           + L +D    +++   N D++AL+ G+E  G     +E +++   + M    ++LNVS +
Sbjct: 196 MTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVS 255

Query: 269 AAVALY 274
             +AL+
Sbjct: 256 LGIALH 261


>gi|121594908|ref|YP_986804.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
 gi|120606988|gb|ABM42728.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
          Length = 260

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 108/261 (41%), Gaps = 28/261 (10%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARL 81
           R++   K+++  +Q S    +   ++L G H  SAAL     P+  +F     + A    
Sbjct: 11  RDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAVAVFSESFWRQA---- 66

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-AP----LLSPTLDAVRNSQLLM 136
                 P  +    +    I  ++  +      ALE+ AP    L  P  + +      +
Sbjct: 67  ------PAEYARAAIKNVVIADVLWSDIS----ALESPAPMGFVLPLPEAEGLDGRMPTV 116

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + D  N+G+ILRSA AF    +   K  +   S  + ++  GA  H     +  L 
Sbjct: 117 VLDRLQDAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGA--HFALRLVEGLA 174

Query: 197 DA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            A + ++       +  SS     L +         I+G EG+G+ P  Q+ A     + 
Sbjct: 175 PADIDRLE---VPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIA 231

Query: 256 MPGIIKALNVSNAAAVALYIT 276
            PG  ++LNV  AAA+ L+ +
Sbjct: 232 QPGGEESLNVGAAAAICLHAS 252


>gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 277

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L+ +L+ V DP N G I+R+A +   D ++ T R    Y+P     + +S +G+L HIP 
Sbjct: 124 LVAILEEVRDPGNAGTIIRAADSAGADAVVLTGRTVDLYNPK----VVRSTTGSLFHIPV 179

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQE 246
              ++L + +    + G + +      +  L            A + G E +GL  +   
Sbjct: 180 AVGADLPEVVSCARAAGLRVLAADIAGEDLLAARTAGQLARPTAWVFGNEARGLPDEWLG 239

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  + + G  +++N++ AA+V LY  ++ FA+
Sbjct: 240 LVDRAVAVPIYGRAESMNLATAASVCLY--ESAFAQ 273


>gi|313204822|ref|YP_004043479.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
           WB4]
 gi|312444138|gb|ADQ80494.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
           WB4]
          Length = 177

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   HN+G++ R+A AF  + +      S    A + K+A GA   + +    
Sbjct: 25  LIVVLDNVRSLHNVGSVFRTADAFLVEAVYLCGITSTPPQAEIHKTALGAENTVTWKYFE 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           +   AL+++ +  +    +   +   L  E+  +   K A++LG E KG++    +    
Sbjct: 85  DTHQALEELKAQAYTVFAIEQAAGSTLLPELALNPAMKYAVVLGNEVKGVQQSVVDACDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQFGTKHSLNVSVTGGIIIW 168


>gi|312891737|ref|ZP_07751246.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
 gi|311295820|gb|EFQ72980.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
          Length = 224

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 9/138 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRIS 193
           +VLD + DP N+G I+R+A  F    II ++    + +A + ++  G+L   H+ Y+ ++
Sbjct: 83  IVLDGIQDPGNLGTIIRTADWFGIQNIICSEDTVDAYNAKVVQATMGSLARIHVHYVNLA 142

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L      + +      G   D +   +    +  + ++LG EG G+RP+ Q        
Sbjct: 143 QL------ITNTKLPVFGALLDGENIYQTNFGSQGL-IVLGNEGNGIRPEIQALIQKPVT 195

Query: 254 LHMPGIIKALNVSNAAAV 271
           + + G  ++LNV+ A AV
Sbjct: 196 IPLLGKAESLNVAIANAV 213


>gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 269

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189
           LL+V +    P NIGA+LR+A A   D +I     T  Y+P+    + +S+ G +  +P 
Sbjct: 118 LLLVAEAPEKPGNIGALLRTADAAHIDAVIIANPKTDLYNPN----IIRSSVGCVFTVP- 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I      + +  + +    +   +  + KP  +   ++  A+++G E +GL  +    +T
Sbjct: 173 IATGTTAEVIDFLKAKNISSYCAALTASKPYYEVSFSEASAIVVGTEDQGLTDEWLTHST 232

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G+I ++NVS AAAV ++
Sbjct: 233 QNIIIPMEGVIDSMNVSVAAAVLIF 257


>gi|22299511|ref|NP_682758.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1]
          Length = 259

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 67/141 (47%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + L  + DP N+G I+R+A A   +G++ +          + ++++G    +P   ++
Sbjct: 110 LGLCLVTLQDPGNLGTIIRTAAAVGVEGLLLSADCVDMTHPKVLRASAGQWFRLPMQTVT 169

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    L+   + G+Q +     +     Q        L++G EG+GL P  Q+ + +   
Sbjct: 170 DGLATLKTYQAQGWQIVVTRPTAPLIYWQADFCQPTLLVMGNEGQGLPPAYQDASFTALR 229

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +     +++LNV+ A AV LY
Sbjct: 230 IPQEPNVESLNVAIATAVLLY 250


>gi|296136564|ref|YP_003643806.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
 gi|294340692|emb|CAZ89084.1| putative tRNA/rRNA methyltransferase (SpoU) [Thiomonas sp. 3As]
 gi|295796686|gb|ADG31476.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
          Length = 262

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189
           ++LD V D  N+G +LR+A A  C  +   +  +   S  + +SA GA       E  P+
Sbjct: 114 LILDRVQDAGNVGTMLRTAAASGCGAVYLLRGCAGVWSPKVLRSAMGAHFVIPVFEDPPW 173

Query: 190 IRISNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            ++ N+    + +++   Q  T+    D K+P         +  I G EG+G+       
Sbjct: 174 EQVLNIVP--RPIYATHMQADTVLYELDLKEP---------VTWIFGNEGQGISDALVAK 222

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFAK 282
            +++  +     +++LNV+ +AA+ LY  + Q+ F+K
Sbjct: 223 CSALVRIPQADGVESLNVAASAAICLYEGVRQSQFSK 259


>gi|111023734|ref|YP_706706.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110823264|gb|ABG98548.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 283

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V D    P N+G ++RSA AF  D ++     +        ++++G+L  +P + +S
Sbjct: 131 LIVVFDRPASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVS 190

Query: 194 NLTDAL-----QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           ++ + L     ++        +G        ++         L++G E +G+    ++  
Sbjct: 191 SVDEILAFRDARRASGTDLHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRDGC 250

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ ++ + G   +L   +A AVALY
Sbjct: 251 DTVVNIPIGGAASSLGAPSAGAVALY 276


>gi|313205776|ref|YP_004044953.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445092|gb|ADQ81447.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
          Length = 228

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYI 190
           +L V++ V    N  AI+RS  A +   ++  ++   + P+ S          +E +P  
Sbjct: 42  ILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEKDNIFDPNLSVTKGADTWVEVEKMPRN 101

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETAT 249
           + S     L+K+   G++ + +S ++   +  + K +K IAL+ G E +G+  +  + A 
Sbjct: 102 KAS-----LEKIKERGYKIVAVSPENNATMLPDYKVEKPIALVFGTEWEGVSDELLDFAD 156

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G  K+ NVS AAA+ +Y
Sbjct: 157 ETLAIPMYGFTKSFNVSVAAAICMY 181


>gi|136456|sp|P18644|TSNR_STRCN RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
           Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
           rRNA methylase; AltName: Full=Thiostrepton-resistance
           methylase
 gi|46771|emb|CAA26234.1| unnamed protein product [Streptomyces cyaneus]
 gi|1403525|emb|CAA67009.1| Thiostrepton resistance protein [Cloning vector pIJ2581]
 gi|7380884|dbj|BAA93040.1| rRNA methylase [Shuttle vector pRES19]
 gi|17974141|emb|CAC93942.1| thiostrepton resistance gene [Cloning vector pIJ6021]
 gi|18252132|gb|AAL61980.1| thiostrepton resistance protein TsrR [Expression vector pANT849]
 gi|18252137|gb|AAL61984.1| thiostrepton resistance protein TsrR [Expression vector pANT1200]
 gi|42733306|dbj|BAD11208.1| thiostrepton resistance protein [Expression vector pTip-NH1]
 gi|42733313|dbj|BAD11214.1| thiostrepton resistance protein [Expression vector pTip-CH1]
 gi|42733320|dbj|BAD11220.1| thiostrepton resistance protein [Expression vector pTip-NH2]
 gi|42733327|dbj|BAD11226.1| thiostrepton resistance protein [Expression vector pTip-CH2]
 gi|42733334|dbj|BAD11232.1| thiostrepton resistance protein [Expression vector pTip-LNH1]
 gi|42733341|dbj|BAD11238.1| thiostrepton resistance protein [Expression vector pTip-LCH1]
 gi|42733348|dbj|BAD11244.1| thiostrepton resistance protein [Expression vector pTip-LNH2]
 gi|42733355|dbj|BAD11250.1| thiostrepton resistance protein [Expression vector pTip-LCH2]
 gi|42733362|dbj|BAD11256.1| thiostrepton resistance protein [Expression vector pTip-NH1.2]
 gi|42733369|dbj|BAD11262.1| thiostrepton resistance protein [Expression vector pTip-CH1.2]
 gi|42733376|dbj|BAD11268.1| thiostrepton resistance protein [Expression vector pTip-NH2.2]
 gi|42733383|dbj|BAD11274.1| thiostrepton resistance protein [Expression vector pTip-CH2.2]
 gi|42733390|dbj|BAD11280.1| thiostrepton resistance protein [Expression vector pTip-LNH1.2]
 gi|42733397|dbj|BAD11286.1| thiostrepton resistance protein [Expression vector pTip-LCH1.2]
 gi|42733404|dbj|BAD11292.1| thiostrepton resistance protein [Expression vector pTip-LNH2.2]
 gi|42733411|dbj|BAD11298.1| thiostrepton resistance protein [Expression vector pTip-LCH2.2]
 gi|51556866|gb|AAU06204.1| thiostrepton resistance protein [Shuttle cosmid vector pHZ1358]
 gi|51890421|dbj|BAD42594.1| thiostrepton resistance protein [Expression vector pTip-QC1]
 gi|51890428|dbj|BAD42600.1| thiostrepton resistance protein [Expression vector pTip-QC2]
 gi|51890435|dbj|BAD42606.1| thiostrepton resistance protein [Expression vector pTip-QT1]
 gi|51890442|dbj|BAD42612.1| thiostrepton resistance protein [Expression vector pTip-QT2]
 gi|51890449|dbj|BAD42618.1| thiostrepton resistance protein [Expression vector pTip-RC1]
 gi|51890455|dbj|BAD42623.1| thiostrepton resistance protein [Expression vector pTip-RC2]
 gi|51890461|dbj|BAD42628.1| thiostrepton resistance protein [Expression vector pTip-RT1]
 gi|51890467|dbj|BAD42633.1| thiostrepton resistance protein [Expression vector pTip-RT2]
 gi|52354838|gb|AAU44620.1| thiostrepton resistance protein [Cloning vector pJK95]
 gi|63146878|emb|CAI94540.1| thiostrepton resistance [Cloning vector pIJ6902]
 gi|91795125|gb|ABE60866.1| thiostrepton resistance [Conjugative vector pHW001]
 gi|293628574|dbj|BAJ04913.1| thiostrepton resistance protein [Cloning vector pTip-istAB-sacB]
          Length = 269

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 3/186 (1%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV+ +    ++++   E   +   +   P  +   D       ++VLD V    NIGAI
Sbjct: 74  IPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIVGNIGAI 133

Query: 151 LRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +R+++A    GII       S     L +++ G +  +P + +S   +A+  +   G Q 
Sbjct: 134 VRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVV-LSGREEAIAFIRDSGMQL 192

Query: 210 IGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           + L +D    +++   N D++AL+ G+E  G     +E +++   + M    ++LNVS +
Sbjct: 193 MTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVS 252

Query: 269 AAVALY 274
             +AL+
Sbjct: 253 LGIALH 258


>gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 257

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 16/147 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD V DP N+G ++R+A A    G++   R +      + +S  G+  H+  +     
Sbjct: 112 LLLDRVQDPGNVGTMVRTADAAGFAGVVVGNRSADLFGPKVVRSMQGSQFHLTLLE---- 167

Query: 196 TDALQKMHSW--GFQTIG--LSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQET 247
                 +H W   F+ IG  +      P  Q  +        ALI+G EG+G+       
Sbjct: 168 ----GDLHKWVQDFKRIGAPVYGTQLNPAAQNFRKVHPGPTFALIMGNEGQGMAADLLAE 223

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
            T+  ++ M G  ++LNV+ +A + ++
Sbjct: 224 TTTNLYIPMRGDAESLNVAVSAGILMF 250


>gi|300790280|ref|YP_003770571.1| tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32]
 gi|299799794|gb|ADJ50169.1| putative tRNA/rRNA methyltransferase [Amycolatopsis mediterranei
           U32]
          Length = 268

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 7/250 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANL 87
           D++ + + +++         +   G   VS  L +    +  LL  +   A L  D A L
Sbjct: 16  DFRHLSTADRRPDRPGGRGFVIAEGTVVVSRLLAS-RYPVRALLGVQRRFAELAGDLAGL 74

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             P  V +   +T+ ++VG       LA+   P      + V  +  + VL+ V D  N+
Sbjct: 75  DVPQYVASA--ETMAEVVGFHLNRGILAVADRPAPLTVSEVVGGTGPIAVLEGVGDHENL 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G++ R+A A    G++     S        + + G +  +P+  +++    L  + + GF
Sbjct: 133 GSLFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVPFGHLTDWPGGLDDLRARGF 192

Query: 208 QTIGLSSDSKK-PLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +      PL   +E    ++AL+ GAEG GL       A     + MP  + +LN
Sbjct: 193 AVAAFTPRPGSIPLAALREHAPGRVALLFGAEGPGLTETALAAADHAVRIPMPAGVDSLN 252

Query: 265 VSNAAAVALY 274
           ++ AAAVA Y
Sbjct: 253 IATAAAVAFY 262


>gi|300691589|ref|YP_003752584.1| tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum
           PSI07]
 gi|299078649|emb|CBJ51307.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum PSI07]
          Length = 259

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +     
Sbjct: 116 VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTF 175

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                ++H      +  SS +++ +     +  +  +LG EG G+  +     T ++ + 
Sbjct: 176 ESVHARLH---VPLLATSSHARQAVFDVPLHKPVGWVLGNEGAGVSEQWLSVTTPIS-IP 231

Query: 256 MPGIIKALNVSNAAAVALY 274
            PG +++LNV+ AAA+ L+
Sbjct: 232 QPGGMESLNVAAAAAICLF 250


>gi|296112629|ref|YP_003626567.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
 gi|295920323|gb|ADG60674.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
          Length = 258

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189
           ++LD + D  NIG +LR+A A     +IT+   +   S    ++  GA       EHI  
Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIA- 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                + + LQK+ +  + T   SS + K +        IA +LG EG+G+R +    A 
Sbjct: 173 -----VNEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAI 224

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280
            +A L  PG  ++LNV  A +V  Y  + Q H+
Sbjct: 225 PIA-LPQPGGQESLNVGIAGSVCFYEMLRQRHY 256


>gi|237785425|ref|YP_002906130.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758337|gb|ACR17587.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 324

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 39/218 (17%)

Query: 96  VPPQTIDKIVGK---EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNI 147
           VP   ID        E V       T  LLS ++++      R   L+ V   ++DP N 
Sbjct: 92  VPVSVIDDKAASALSETVSHSGVCATCQLLSTSVESCINRARRGRGLVAVGIDMSDPGNA 151

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G  +R+A A   D ++         +    +SA+G++  IP  R  ++T++L  + S GF
Sbjct: 152 GTFIRTADAVGADCVVFLGNSVDIHNGKTVRSAAGSVFRIPIGRERDITNSLADLSSAGF 211

Query: 208 QTIGLSSDSKKPL--------EQEIKNDKI-----------------------ALILGAE 236
           Q +  + D +  L        +  I+  +                        A + G E
Sbjct: 212 QIVATTIDGETSLDDAADDAAQWRIRRVQATEGVGGTEDTGASSNPPMMTRPSAWLFGNE 271

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL     + A     + + G  ++ NV+ AAA+ LY
Sbjct: 272 AHGLSTDVVDFANVRVRIPIRGSAESFNVAGAAAITLY 309


>gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 219

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA------V 175
           +  TLD  R   L ++++ V+ PHNI AI+R+     CD +     ++ ++ A       
Sbjct: 9   ICQTLDR-RQPDLTVLMEDVHKPHNISAIIRT-----CDAVGVMAVHAMNQVADGDVLDT 62

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
            ++ A G+ + +   R  ++T A+ ++H   F+      SD              A+++G
Sbjct: 63  YSQVAQGSEKWVDLNRHPDVTVAIDQLHQQNFKIYAAHLSDRAVDYRTIDYTQPTAILMG 122

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           AE  G+     E       + M G++++LNVS AAAV L+  Q  
Sbjct: 123 AERWGVSDTAAELVDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQ 167


>gi|326563875|gb|EGE14126.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
 gi|326566546|gb|EGE16692.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
 gi|326571607|gb|EGE21622.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
          Length = 258

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189
           ++LD + D  NIG +LR+A A     +IT+   +   S    ++  GA       EHI  
Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIA- 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                + + LQK+ +  + T   SS + K +        IA +LG EG+G+R +    A 
Sbjct: 173 -----VDEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAI 224

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280
            +A L  PG  ++LNV  A +V  Y  + Q H+
Sbjct: 225 PIA-LPQPGGQESLNVGIAGSVCFYEMLRQRHY 256


>gi|315503266|ref|YP_004082153.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315409885|gb|ADU08002.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 294

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L+ VL  + DP N G +LR+A A     +I         +    ++++G+L H+  
Sbjct: 124 RGPRLVAVLVGIRDPGNAGTVLRTADAAGAGAVIFAGEAVDPYNGKCVRASAGSLFHVDV 183

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQ 245
           +R ++   A++ + + G + +  +      L+      ++A     + G+E  GL  +  
Sbjct: 184 VRAADPLAAVEALRAAGLEILATTGYGDSDLDDLADAGRLAAPTAWLFGSEAHGLPDELT 243

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A +   + + G  ++LN++ AAAV LY
Sbjct: 244 GAADARVRVPLHGRAESLNLAAAAAVCLY 272


>gi|253690572|ref|YP_003019762.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757150|gb|ACT15226.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 230

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHNI A++R+A A     +     +  S    L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVHAI--WPTSRMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
                N+ DA+  + + G Q +  +        +EI   +   ++LG E  G+  +  + 
Sbjct: 73  VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164


>gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 225

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 19/165 (11%)

Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-------TKRYS 169
           P     +DAV   R   L +V++   DP N+ A+LR+  AF   GI T        K Y 
Sbjct: 11  PERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAF---GIQTLHAVEGPMKPYD 67

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
            ++     K +  A + +   R S+  + L  + S GF        +   P+       K
Sbjct: 68  RNK-----KISQNADKWLDVRRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGK 122

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +AL+ G E +G+  +    A +   + M G +++LNVS AAA++L
Sbjct: 123 VALVFGNEQRGVSEEALAVADACYAIPMRGFVQSLNVSVAAAISL 167


>gi|238750786|ref|ZP_04612284.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
 gi|238710930|gb|EEQ03150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
          Length = 230

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + L+ V+ PHN+ AI+R+A A    GI       P +E      SA+G+   
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAV---GIHQVHAIWPTTEMYTRLSSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQ 245
           +     +++TDA+  + S G Q +      K    +EI       +++G E  G+  +  
Sbjct: 71  VQVKTHAHITDAITYLKSQGMQILATHLSDKAVDFREIDYTLPTCILMGQEKTGISEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 ALADKDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|227327134|ref|ZP_03831158.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 230

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHN+ A++R+A A     I     +  S    L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEIHAI--WPTSRMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
                N+ DA+  + + G Q +  +        +EI   +   ++LG E  G+  +  + 
Sbjct: 73  VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164


>gi|308806822|ref|XP_003080722.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
 gi|116059183|emb|CAL54890.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
          Length = 247

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 3/152 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R +   + L+ V DP N+G + R+AVAF  D +          +    ++A GA   +
Sbjct: 95  AGRRTTRTLALEGVQDPGNLGTLARTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRL 154

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQ 245
            ++   +  +  +     G         + + ++ E   D  K  L+LG EG+GL     
Sbjct: 155 NFVTFDSFDELERAARELGMDLYAAEPRADEDVDPERVGDVAKACLVLGTEGQGLSDDAL 214

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +A + M G +++LNV+ A  +  Y+ +
Sbjct: 215 RACKPVA-VPMSGEMESLNVAIAGGILCYLMR 245


>gi|148655189|ref|YP_001275394.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
 gi|148567299|gb|ABQ89444.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
          Length = 262

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 29/257 (11%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWD 84
           K+++S         +   L L GV  V+ AL + +     L A      T    A L   
Sbjct: 11  KRIRSLASDRHERRRERMLVLEGVRLVADALESGATLTLTLYAPDQLQLTPAGAALLQKL 70

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVH-QGL-ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             LP  +      PQ +      + VH QG+ AL + P ++P         LL+V+D V 
Sbjct: 71  RYLPASYEAT---PQVV--AAASDTVHPQGVVALASWPHVAPG-----KPGLLLVIDAVQ 120

Query: 143 DPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLT-D 197
           DP N+G +LRSA A     ++    T   Y+P     + +SA GA  H       +L+ D
Sbjct: 121 DPGNLGTLLRSAEAVGVAQVLCSVGTVDLYAPK----VVRSAMGA--HFRLAMEQDLSWD 174

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           A+ +  +          +++ P          AL++G E  GL    +  AT    + M 
Sbjct: 175 AIGERLASVDHVYAADPEARMPYYAADWRQPSALLVGNEAHGLSDAARRLATKQIAIPMR 234

Query: 258 GIIKALNVSNAAAVALY 274
           G  ++LNV+ AA+V L+
Sbjct: 235 GGTESLNVAVAASVILF 251


>gi|325282387|ref|YP_004254928.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
           MRP]
 gi|324314196|gb|ADY25311.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
           MRP]
          Length = 221

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 23/165 (13%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPS-------ESAVLAKS 179
           +R   L +++D VN PHN+ AILR+     CD  G +T     P         S +   S
Sbjct: 15  LRQPTLSVLMDEVNKPHNLSAILRT-----CDAVGAMTAHAVPPQSMSLGSFRSRIFEAS 69

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILG 234
           +  A + +   + ++  +A++ +   G Q +       S D ++P           ++LG
Sbjct: 70  SGSAHKWVSVQQHASALEAIRTLQGQGVQVLATHLSQRSVDYREP----DYTRPTCVLLG 125

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           AE  G+     E A +   + M G++++LNVS AAA  L+  Q  
Sbjct: 126 AEKFGVSDVAAEAADANIVIPMMGMVQSLNVSVAAATILFEAQRQ 170


>gi|300767192|ref|ZP_07077104.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495011|gb|EFK30167.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 255

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 25/270 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL+++H        + +KK+Q+  +K R   Q     L G H V+ A+      I 
Sbjct: 2   EKINSLQNAHV-------KAWKKLQT--KKGR--KQQGQYLLDGWHLVNEAVK-AHVAIQ 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDA 128
            LL T   LA    + +L H FP        + K +      QG+ AL T P     L  
Sbjct: 50  TLLITAKQLAT---EPDLTH-FPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQ 105

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  ++  ++LD+V DP NIG ++R+A A    G+             + ++  G+  H+ 
Sbjct: 106 LDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQ 165

Query: 189 YIR--ISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            I   +  L D LQ   S  +G +   L+  + + L+ +       LI+G EG G+  + 
Sbjct: 166 LISTDLDKLVDQLQAQGSPVYGSE---LNPQAARYLDIDAPA-SFGLIMGNEGNGMSREL 221

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   ++ + G  ++LNV+ AA V ++
Sbjct: 222 LARTDQNLYIPIKGQAESLNVAVAAGVLMF 251


>gi|212640614|ref|YP_002317134.1| rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212562094|gb|ACJ35149.1| rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 238

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIP 188
           R   + ++ + V+DPHN  A+LRSA AF    +      +P E +  + + A   L    
Sbjct: 45  RTRYITILTEAVDDPHNQAAVLRSAEAFGIQDVHVVTGAAPFEPNKWVTRHADKWLNVHK 104

Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +   S++  A++ +   G+Q       +   PLEQ   +    L+ G E +G+  +    
Sbjct: 105 H---SSIEQAIRHLQQNGYQVYASYLGEGTIPLEQIDVSKPTVLLFGNEHRGVSEEALAL 161

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G +++ N+S AAA++LY
Sbjct: 162 ADGKFVIPMNGFVQSFNISVAAAISLY 188


>gi|326316588|ref|YP_004234260.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373424|gb|ADX45693.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 264

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           AP+L   L  V       VLD + D  N+G+ILRSA AF    +   K  +   S  + +
Sbjct: 106 APVLQAGLPTV-------VLDRLQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLR 158

Query: 179 SASGALEHIPYIRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +  GA  H     +  L+ D +  +       +  SS     L +         ILG EG
Sbjct: 159 AGMGA--HFALHLVEGLSVDDIDTLR---LPLLATSSHGGDLLHRACLPWPCGWILGHEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G+    Q+ AT +  +  PG  ++LNV  AAA+ L+
Sbjct: 214 QGVSEALQQRATHLIRIAQPGGEESLNVGAAAAICLH 250


>gi|156972948|ref|YP_001443855.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524542|gb|ABU69628.1| hypothetical protein VIBHAR_00626 [Vibrio harveyi ATCC BAA-1116]
          Length = 227

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADAT---GLHKVHAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV LY  Q  
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQ 163


>gi|145349369|ref|XP_001419108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579339|gb|ABO97401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 306

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+   ++ ++ V DP N+G + R+AVAF  D +          +    ++A GA   + +
Sbjct: 152 RDVVRVLAVEGVQDPGNLGTLTRTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRVDF 211

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET 247
           +   +  D          +       +K+ ++ E      K  L+LG EG+GL       
Sbjct: 212 VAFDSFDDLASAGRELNMELYAAEPSAKEDVDPERAKAVAKACLVLGTEGQGLSDDALRA 271

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +A + M G +++LNV  A  V +Y+ Q
Sbjct: 272 CKPVA-IPMSGEMESLNVGIAGGVLMYLMQ 300


>gi|28378262|ref|NP_785154.1| rRNA methylase [Lactobacillus plantarum WCFS1]
 gi|254556469|ref|YP_003062886.1| rRNA methylase [Lactobacillus plantarum JDM1]
 gi|308180411|ref|YP_003924539.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|28271097|emb|CAD64002.1| rRNA methylase [Lactobacillus plantarum WCFS1]
 gi|254045396|gb|ACT62189.1| rRNA methylase [Lactobacillus plantarum JDM1]
 gi|308045902|gb|ADN98445.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 257

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 25/270 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL+++H        + +KK+Q+  +K R   Q     L G H V+ A+      I 
Sbjct: 4   EKINSLQNAHV-------KAWKKLQT--KKGR--KQQGQYLLDGWHLVNEAVK-AHVAIQ 51

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDA 128
            LL T   LA    + +L H FP        + K +      QG+ AL T P     L  
Sbjct: 52  TLLITAKQLAT---EPDLTH-FPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQ 107

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  ++  ++LD+V DP NIG ++R+A A    G+             + ++  G+  H+ 
Sbjct: 108 LDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQ 167

Query: 189 YIR--ISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            I   +  L D LQ   S  +G +   L+  + + L+ +       LI+G EG G+  + 
Sbjct: 168 LISTDLDKLVDQLQAQGSPVYGSE---LNPQAARYLDIDAPA-SFGLIMGNEGNGMSREL 223

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   ++ + G  ++LNV+ AA V ++
Sbjct: 224 LARTDQNLYIPIKGQAESLNVAVAAGVLMF 253


>gi|326566884|gb|EGE17023.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
 gi|326575114|gb|EGE25042.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
 gi|326576800|gb|EGE26707.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
          Length = 258

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189
           ++LD + D  NIG +LR+A A     +IT+   +   S    ++  GA       EHI  
Sbjct: 114 LILDGLQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIA- 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                + + LQK+ +  + T   SS + K +        IA +LG EG+G+R +    A 
Sbjct: 173 -----VDEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAI 224

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY--ITQNHF 280
            +A L  PG  ++LNV  A +V  Y  + Q H+
Sbjct: 225 PIA-LPQPGGQESLNVGIAGSVCFYEMLRQRHY 256


>gi|217967693|ref|YP_002353199.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
 gi|217336792|gb|ACK42585.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
          Length = 269

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +N+++++  D + DP N+G I+R A     D +I ++      +  + + ++G++  +P 
Sbjct: 112 KNNKIVLFSDDIQDPGNLGTIIRIADGVGVDAVILSENTVDPYNYKVIRGSTGSIFRVP- 170

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETA 248
           I +S+    ++    W  + I       K   QE   +   LILG E  G R  K  +  
Sbjct: 171 IWVSDKKTFIEFFKGW--KVIIADPKGSKVYFQENLRESFVLILGNEAWGTRKEKYIDLD 228

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +  + +   + +LNVS AA+V L+  Q  
Sbjct: 229 PILLKIPLREGVDSLNVSIAASVFLFEAQRQ 259


>gi|85057856|ref|YP_456772.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789961|gb|ABC65693.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 234

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 3/180 (1%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           P   I+  + KE        +   L  P  +    S  ++VLD + DP N+G ++RSA A
Sbjct: 56  PGTFIESSLMKELSQTKTVFDQMALCKPISENNLLSDKILVLDDIQDPANLGVLMRSASA 115

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSD 215
           F  + +  +   +        +S+ GAL  +   R S     L+++    +         
Sbjct: 116 FGFNQVFASFHSADFYHEKTIRSSQGALFSLSLKRGST-KSFLEEVKEQNYSIFSAFPQK 174

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S   ++   K+ K  L+LG EG+G+  +T+  +    ++     +++LNV+ A ++ +Y+
Sbjct: 175 SNITIKDAKKHPKKVLVLGNEGQGISSETEGLSDYFVNIFTQN-VESLNVAVAGSILMYL 233


>gi|326771653|ref|ZP_08230938.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
 gi|326637786|gb|EGE38687.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
          Length = 310

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 19/248 (7%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVK 94
           N +++H        + G   V  A+ +   ++  +  T+ AL R    WD  +     V 
Sbjct: 59  NARAKH----RRFLVEGPQGVREAVRHVPGRVLDVYLTEAALERHSEIWDEAVTAGLYVH 114

Query: 95  TVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
               Q +D +       QGL    A E A        A+  ++L+ VL    DP N G I
Sbjct: 115 VTTQQVMDAMSPDA---QGLLAVVATEEATGSEALAAALEGARLVAVLTQAQDPGNAGTI 171

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A   D ++  +      +  + +S +G+L H+P +    L DA+  +H+ G    
Sbjct: 172 IRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVTALHNAGLTV- 230

Query: 211 GLSSDSKKPLE----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            L++D +   +    + +     A +LG E  GL P+    A ++  + + G  ++LNV+
Sbjct: 231 -LAADGRGDFDLFEVESLLEAPSAWLLGNEAHGLPPEALSRADAVVSIPIYGKAESLNVA 289

Query: 267 NAAAVALY 274
            AAAV LY
Sbjct: 290 AAAAVCLY 297


>gi|256824064|ref|YP_003148024.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256687457|gb|ACV05259.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 271

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +V +H+  P N+GAILR+A A   D +I     +   +  + + + G +  +P +  +
Sbjct: 124 LYVVAEHLEKPGNLGAILRTADAAGVDAVIAADPVTDWGNPNVVRGSKGTVFSVP-VATA 182

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              + L  +   G   +  +  ++    Q      +A+ +GAE  GL     E AT    
Sbjct: 183 PTPEVLDFLAGRGMTLVATTPHTEVLHTQVDLTGPVAIAVGAEKTGLTASALEGATHRVR 242

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G   +LNV+ +AA+ +Y
Sbjct: 243 IPMVGRANSLNVATSAAIVVY 263


>gi|299067474|emb|CBJ38673.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum CMR15]
          Length = 259

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +    
Sbjct: 115 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCT 174

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                 ++H      +  SS ++  +     N  +  + G EG G+  +     T ++ +
Sbjct: 175 FESVHARLH---VPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLSVTTPIS-I 230

Query: 255 HMPGIIKALNVSNAAAVALY 274
             PG +++LNV  AAA+ L+
Sbjct: 231 PQPGGMESLNVGAAAAICLF 250


>gi|88810460|ref|ZP_01125717.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
 gi|88792090|gb|EAR23200.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
          Length = 209

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 9/153 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186
           R   L ++LD VN PHN+ AILR     +CD +   + ++     V A    S++G  + 
Sbjct: 8   RQPDLRVLLDQVNKPHNLAAILR-----TCDAVGVFQAHAVWPGGVPAVHHHSSAGVGKW 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  +   ++  A+Q +H+ G +       +      Q       A+++GAE  G+     
Sbjct: 63  VNVVAHPDVCSAIQALHNEGLRVYAAHPVAGAVDYRQADYTVPCAVLMGAELWGVSEAAC 122

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +       + M G+  ++NVS AAAV LY  Q 
Sbjct: 123 QRVDEFITIPMFGLGASVNVSVAAAVILYEAQR 155


>gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
 gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
          Length = 181

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 13/155 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ RS  AF    I      +    A + K+A GA E I +   +
Sbjct: 26  LVVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAEIHKTALGAEESIAWRYFA 85

Query: 194 NLTDALQKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +A++ + + GF      Q  G +      LE   +  K A++LG E KG+     + 
Sbjct: 86  TAEEAVRNLQTKGFFVYSIEQAEGSTKLHHLTLE---RRQKYAVVLGNEVKGVHQSVVDL 142

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +     +   G   +LNVS AA + ++     FAK
Sbjct: 143 SDGCLEIPQWGTKHSLNVSVAAGMVVW----EFAK 173


>gi|118617269|ref|YP_905601.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
 gi|118569379|gb|ABL04130.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
          Length = 275

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V   + +P N G ++R A A   + ++         +    ++++G++  IP I  
Sbjct: 122 RLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVA 181

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
            + + AL  +   G Q +    D +K L+   ++     A + G E  GL  +    A  
Sbjct: 182 PDTSAALGALRGAGLQALASVLDGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHH 241

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G  ++LNV+ AAA+ LY
Sbjct: 242 RVRIPMSGGAESLNVAAAAAICLY 265


>gi|224537157|ref|ZP_03677696.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521212|gb|EEF90317.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 175

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +  + 
Sbjct: 25  LVVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  +A+  +   G+    +       +  E+  D   K A+++G E KG++ +  + +  
Sbjct: 85  NCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKYAVVMGNEVKGVQQEVIDHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|237728947|ref|ZP_04559428.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
 gi|226909569|gb|EEH95487.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
          Length = 229

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A SA+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  + S G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHLTIGDAVTHLKSRGMQVLATHLSDKAVDFREIDYMRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMTGMVQSLNVSVASALILYEAQRQ 164


>gi|301630620|ref|XP_002944414.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like
           [Xenopus (Silurana) tropicalis]
          Length = 278

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 11/159 (6%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            AP L P +  V       VLD + D  N+G+ILRSA AF    ++  K  +   S  + 
Sbjct: 113 AAPALQPGVATV-------VLDRLQDAGNVGSILRSASAFGFAQVLALKGCAALWSPKVL 165

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++  GA  H     I      L ++ + G   +  SS     L +       A +LG EG
Sbjct: 166 RAGMGA--HFALRLIEG--GGLAQIRALGLPLLATSSHQGDYLHRAALPWPCAWVLGHEG 221

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G+ P  +  A     +  PG  ++LNV+ AAA+ L+ +
Sbjct: 222 QGVAPALEALAAQRIRIAQPGGEESLNVAAAAAICLHAS 260


>gi|183982465|ref|YP_001850756.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
 gi|183175791|gb|ACC40901.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
          Length = 275

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V   + +P N G ++R A A   + ++         +    ++++G++  IP I  
Sbjct: 122 RLVAVAVEIGEPGNAGTLIRIADAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVA 181

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
            + + AL  +   G Q +    D +K L+   ++     A + G E  GL  +    A  
Sbjct: 182 PDTSAALGALRGAGLQVLASVLDGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHH 241

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G  ++LNV+ AAA+ LY
Sbjct: 242 RVRIPMSGGAESLNVAAAAAICLY 265


>gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
           16795]
 gi|164603429|gb|EDQ96894.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
           16795]
          Length = 265

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 73/145 (50%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           ++ + +++LD + DP N+G I+R+A +   D II  K      +  + +S  G++  +  
Sbjct: 115 QDDKFVLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPKVIRSTMGSIFDMNI 174

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I+ +   +A+  + +  F  +     ++    +   + KIAL++G E  G+  +    + 
Sbjct: 175 IQTTQ-DEAVDFLKANNFDIVSSYLHTESYYNETTYDGKIALVIGNEANGINDELISKSD 233

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + + G  ++LN + +AA+ +Y
Sbjct: 234 KLVKIPIYGNAESLNAAISAAILMY 258


>gi|154500974|ref|ZP_02039012.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
           29799]
 gi|150269998|gb|EDM97517.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
           29799]
          Length = 252

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 6/179 (3%)

Query: 98  PQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           P ++ + V      QGL A+   P L+P  D +   + L VLD V DP N+G I R+A A
Sbjct: 74  PDSLLRAVSSVETPQGLLAVCRNPGLTPP-DKLTGGRYL-VLDGVQDPGNLGTIWRTADA 131

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSD 215
           F  DG++     +   S    ++  GA   +P          AL            L  D
Sbjct: 132 FGADGLLLVNGCADPWSPKTIRATMGACFRLPAWETDLETVRALLDGADIPLYATALRED 191

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    + ++K  + A+++G+EG+G+  +          + M    ++LN + AA V L+
Sbjct: 192 TVDVRDVDLK--RAAVVIGSEGRGISDEALALCRRTIKIPMRARCESLNAAMAAGVVLW 248


>gi|17988081|ref|NP_540715.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|256045941|ref|ZP_05448813.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563222|ref|ZP_05833708.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265992352|ref|ZP_06104909.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983831|gb|AAL52979.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|260153238|gb|EEW88330.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|263003418|gb|EEZ15711.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 297

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+GA++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + LI+G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|254446077|ref|ZP_05059553.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198260385|gb|EDY84693.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 273

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 125 TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           TLD ++ S    L++++ +  P N+G ILRSA A   D +I     +   +    +S++G
Sbjct: 110 TLDDLQLSDPPFLLIVEAIEKPGNLGTILRSADAAGVDAVICCDSVTDLFNPNAVRSSTG 169

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            L  +P +  S+  + ++ +   G +TI  +  +            +A+++G+E  GL  
Sbjct: 170 VLFSMPTVTASS-DEVIKWIRQKGIRTIATTPHTDILYTDTDLRGPLAIVMGSEQFGLSE 228

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K      +   + M G   +LNV+ A  + L+
Sbjct: 229 KWLSACDTKVLIPMAGQADSLNVAMATLITLF 260


>gi|149372541|ref|ZP_01891653.1| putative rRNA methylase [unidentified eubacterium SCB49]
 gi|149354584|gb|EDM43148.1| putative rRNA methylase [unidentified eubacterium SCB49]
          Length = 263

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 16/251 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           KK+ +   KSR   +     + G   VS A+     +I  LL     +A L+   N+   
Sbjct: 14  KKINALTDKSRERKKQGVFIVEGAREVSLAIKG-HHEILTLLFCPE-IADLNALPNVADS 71

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNI 147
               +V      KI  +      +A+        TLDA+   + + L+++ +    P NI
Sbjct: 72  VEKISVSLDVYQKIAYRATTEGVIAIVKNS--KTTLDALVFPKQNPLILIAEAPEKPGNI 129

Query: 148 GAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           GA+LR+A A   D ++     T  Y+P+    + +S+ G +     + +++  D +  + 
Sbjct: 130 GALLRTADAAHVDAVLIANPRTDLYNPN----IIRSSVGCV-FTNQVAMASSEDIIAFLK 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                         +P   +      A+++G E  GL    ++ +T+  H+ M G I +L
Sbjct: 185 KNNISIYSAILQESQPYHTQDFTTGCAIVVGTEATGLSQAWRDASTANIHIPMQGEIDSL 244

Query: 264 NVSNAAAVALY 274
           NVS AAAV L+
Sbjct: 245 NVSVAAAVLLF 255


>gi|302541293|ref|ZP_07293635.1| putative 23S rRNA methyltransferase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458911|gb|EFL22004.1| putative 23S rRNA methyltransferase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 299

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ VL +V DP N G +LR A A   D ++ T       +    +++ G+L H+P    
Sbjct: 136 RLVAVLANVRDPGNAGTVLRCADAAGADAVVFTDASVDPYNPKAVRASVGSLFHLPVATG 195

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
             + +A+  + + G + +      ++ L++E+ +  +    A I G E  GL   T+  A
Sbjct: 196 VPVEEAVDGLRTAGARVLAADGAGERDLDEELDDGVLGAPTAWIFGNEAWGLPEATRALA 255

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + + G  ++LN++ AAAV LY
Sbjct: 256 DEVVRVPIHGRAESLNLATAAAVCLY 281


>gi|260774740|ref|ZP_05883643.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609302|gb|EEX35454.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 227

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L   L+ V+ P+N+ A++R+A A    GI       P++   L+ +++GA   +  
Sbjct: 16  RQADLTFCLEEVHKPNNVSAVIRTADAT---GIHKIHAVWPNDMRTLSHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++   G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  ETHDSIGKAVAELKDQGMQILVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEEAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+AV +Y  Q  
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVIMYEAQRQ 163


>gi|262273555|ref|ZP_06051369.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222533|gb|EEY73844.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 230

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALE 185
           A R   L + ++ V+ P+NI AI+R+A A    GI       P  S +  L  +++GA  
Sbjct: 14  ATRQPDLTVCMEEVHKPNNISAIIRTADAV---GIHQVHAVWPKNSKMRTLGGTSAGARN 70

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKT 244
            +  +   N  DA   + + G Q +  +        +EI   K  A+++G E  G+  + 
Sbjct: 71  WVDVVTHDNTPDAFAALKAKGMQILVTNLSETAVDFREIDYTKPTAIVMGQEKTGISQQA 130

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 LALADQDIIIPMVGMVQSLNVSVASALILYEAQRQ 165


>gi|227877757|ref|ZP_03995791.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256843610|ref|ZP_05549098.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256850086|ref|ZP_05555516.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|293380718|ref|ZP_06626766.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
           crispatus 214-1]
 gi|227862660|gb|EEJ70145.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256615030|gb|EEU20231.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256713058|gb|EEU28049.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|290922682|gb|EFD99636.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
           crispatus 214-1]
          Length = 255

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG++ +   +   +    ++  G+  HI  I+  +L
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172

Query: 196 TDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +             L   S K L    K  ++ALI+G E  G+       A    ++
Sbjct: 173 ADVITDFQDAAIPVYASLLDRSAKQLPDFEKVPQLALIIGNEAHGISKTIASLADEKLYI 232

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            + G  ++LN + AA + +Y    HFA
Sbjct: 233 PIKGQAESLNAAVAAGIMIY----HFA 255


>gi|218961471|ref|YP_001741246.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730128|emb|CAO81040.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 269

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 1/143 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++ D++    N+G++ R+A       II        E + + K+A G  + + +   
Sbjct: 118 RITVICDNLRSVFNVGSLFRTAECLGIGKIIVCGITPTPEHSNMPKTAMGTEKLVAWQYF 177

Query: 193 SNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            + T+A+   H  GF    L + D+ K + Q +    +A+++G E  G+     E     
Sbjct: 178 PSTTEAIAFCHQEGFFIYALETIDNAKSVFQTVYQFPLAIVIGNEALGIESSILELCDEF 237

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             L   G   +LNV  A  + LY
Sbjct: 238 ITLPQLGWKNSLNVGVATGIVLY 260


>gi|149195840|ref|ZP_01872897.1| spoU protein [Lentisphaera araneosa HTCC2155]
 gi|149141302|gb|EDM29698.1| spoU protein [Lentisphaera araneosa HTCC2155]
          Length = 233

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 4/148 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R   + +VL+++   HN  AILR+A AF    I +       + +  ++ SA   L+   
Sbjct: 39  RTEHICLVLENLYQEHNASAILRNADAFGIQNINVIENDNDFAANKEVSMSAHKWLDIKA 98

Query: 189 Y--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +   +I N    L  +   G++    S   +     E+  D+ IAL  G E  GL     
Sbjct: 99  WNESKIDNTVKCLSALKKQGYKICATSLRPESITLDELPVDEPIALCFGTELTGLSEVAH 158

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E A  M ++ M G I++ NVS A+A++L
Sbjct: 159 EMADYMTYIPMNGFIQSFNVSVASALSL 186


>gi|163786475|ref|ZP_02180923.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
 gi|159878335|gb|EDP72391.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
          Length = 176

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 75/148 (50%), Gaps = 3/148 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + S ++++LD++   +NIG++ R++ AF  + I      +      + K+A G+ E + +
Sbjct: 21  KKSPIIIILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHNDIRKTALGSTETVDW 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQE 246
             + N  D ++K+   G +   +  ++S   L + +   N K A + G E KG+  +  +
Sbjct: 81  EYVENTLDLVEKLKVEGVKVCSIEQAESATMLNKFLPQPNTKYAFVFGNEVKGVSQEVVD 140

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            + ++  +   G   +LN+S +A V ++
Sbjct: 141 ISDTVIEIPQYGTKHSLNISVSAGVVIW 168


>gi|78042655|ref|YP_360402.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 258

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
            +VLD + DP N+G +LR+A  F   G+I        Y+P     + ++++G     P +
Sbjct: 111 FLVLDGLQDPGNVGTLLRAAFGFGVSGVILLPPAVDIYNPK----VIRASAGTAFKFPVL 166

Query: 191 RIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           R+    L D + K +   F      S+   PL       K  + +G EG+G+    +   
Sbjct: 167 RMEADELKDIILKNNIPLFLA---ESEGGIPLTAIDFPAKFFVAVGNEGQGISTTLKSLP 223

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + MPG I++LN + A  + +Y
Sbjct: 224 HQKISIPMPGKIESLNAALAGGIIIY 249


>gi|319900584|ref|YP_004160312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319415615|gb|ADV42726.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 180

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +  + 
Sbjct: 29  LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVE 88

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           N  +A+  +   G+    +       +  E+   K  K A+++G E KG+R +  + +  
Sbjct: 89  NSVEAVDNLKKEGYVVYSVEQAEGSIMLDELALDKEKKYAVVMGNEVKGVRQEVIDHSHG 148

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 149 CIEIPQYGTKHSLNVSVTAGIVIW 172


>gi|313675966|ref|YP_004053962.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312942664|gb|ADR21854.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 170

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 76/150 (50%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           Q++++ +++  P N+G I+R + AF  + I     ++   +    +++    + + Y  +
Sbjct: 17  QIVLIAENIRTPENLGMIMRLSEAFGLEKIYFVGEHAIDLTTKAKRASRNTYKTMDYEFV 76

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDK-IALILGAEGKGLRPKTQETAT 249
            ++     ++   G+  I L  +   +P+    I N K + LI+G+E +G+  +  +   
Sbjct: 77  VDVKKQFSQLLEVGYHAIALEITKFSEPIHNLRINNQKKVVLIIGSERQGISEELLQFCQ 136

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY-ITQN 278
           +  H+ M G   ++NV NA ++ L+ IT+N
Sbjct: 137 NHYHIPMFGGNSSINVVNALSIGLFKITEN 166


>gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 189

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + ++++LD++   +NIG++ R+A AF  + +      +      + K+A GA E + +
Sbjct: 23  RKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTALGATETVVW 82

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQE 246
             + +  D ++K+     +   +       +    K    +KIA+I G E KG++ K   
Sbjct: 83  EHVEDTLDLVEKLKEDNIKVFSIEQAEGAVMLNNFKPEIGEKIAVIFGNEVKGVQQKVVS 142

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  +  +   G   +LN+S +  V L+
Sbjct: 143 ASDGVIEIPQAGSKHSLNISVSTGVILW 170


>gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 268

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVA------FSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           L++VL+ V  P N+GAILR+A A      F CD    T  Y+P+    + +++ GA+  +
Sbjct: 122 LILVLETVEKPGNLGAILRTADAAGVHAVFLCDP--QTDWYNPN----VIRASLGAVFTV 175

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P   ++   DAL  +       +    ++  P      +  IA ++G E  G+     E 
Sbjct: 176 PVFTVAA-ADALNWLQMHKIAILATHLEASYPYFDCDLSGAIAFVMGTEANGISNFWVEA 234

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G + ++NVS + A+ L+
Sbjct: 235 AQQRVIIPMHGQVDSMNVSVSTAILLF 261


>gi|304392320|ref|ZP_07374261.1| rRNA methylase [Ahrensia sp. R2A130]
 gi|303295424|gb|EFL89783.1| rRNA methylase [Ahrensia sp. R2A130]
          Length = 285

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 13/172 (7%)

Query: 121 LLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           L S T DA +         +VLD V DP N+G I+R+A A    G++     +       
Sbjct: 114 LKSQTTDAAKITPQGDTCWLVLDRVRDPGNLGTIIRTADALGVAGVVLVGETTDPFGLEA 173

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSW---GFQTIGL---SSDSKKPLEQEIKNDKIA 230
            ++  G+L   P +R+S   D L    SW   G   +G     +   + ++   K   + 
Sbjct: 174 VRATMGSLFAKPLVRLSR-ADYLVLAESWKAGGGHIVGTHLAGAVDHRTIDYAAK--PLL 230

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L++G E +GL  +   +   +A + M G   +LN++ A  +  +  ++H  K
Sbjct: 231 LLMGNEQQGLDDEMAASCDHLALIAMGGAADSLNLAVATGIVTFAARSHALK 282


>gi|260889769|ref|ZP_05901032.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
 gi|260860375|gb|EEX74875.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
          Length = 256

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 11/160 (6%)

Query: 121 LLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAV 175
           L S  L+ + + Q  +++LD + DP N G I+R+ +A +   +I TK     Y+P     
Sbjct: 93  LYSKNLNTIEDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPK---T 149

Query: 176 LAKSASGALE-HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           +  + SG  + +I Y    N+   L K +     T  L  DS    + E++ +  A I G
Sbjct: 150 VRATMSGIFKLNIIYETPENIVKFLNKKNYLKIAT-ALHEDSVSYEKIELRKNN-AFIFG 207

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            EG G+     E +   A + + G I++LNVS A  + LY
Sbjct: 208 HEGGGVSDYLIENSHIKAIIPIYGNIESLNVSVATGIFLY 247


>gi|225851684|ref|YP_002731917.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|256112654|ref|ZP_05453575.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264805|ref|ZP_05467337.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|265994095|ref|ZP_06106652.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|225640049|gb|ACN99962.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis ATCC 23457]
 gi|262765076|gb|EEZ10997.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263095215|gb|EEZ18884.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408171|gb|ADZ65236.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
 gi|326537884|gb|ADZ86099.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis M5-90]
          Length = 297

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+GA++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + LI+G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|307102497|gb|EFN50770.1| hypothetical protein CHLNCDRAFT_142475 [Chlorella variabilis]
          Length = 451

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQ----------LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           HQG+ L+ +PL    +  +  +           + + LD V DP N GA LRSA      
Sbjct: 359 HQGVVLDCSPLEFEPMSELPAAPAAPPPGGRLPVWLCLDEVMDPQNFGAALRSAHFLGVA 418

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIP 188
           G++T  R S   SA ++K+++GA+E +P
Sbjct: 419 GVLTCHRNSAPLSAAVSKASAGAMELLP 446


>gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
 gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
          Length = 229

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  +    +A SA+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGNRMRTMASSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                 N+ DA+  + + G Q +      K    +EI   +   +++G E  G+  +   
Sbjct: 72  EVKTHRNIGDAVGHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEEALR 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
          Length = 223

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185
            R   L ++++ VN PHN+ AILR+     CD  G+      S + +      +A G+ +
Sbjct: 17  CRMKNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
            +      N   A+  + + GF+  G + +S+    +    +     +LGAE  GL  + 
Sbjct: 72  WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNEL 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS AA++ L+
Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLF 161


>gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320]
 gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320]
 gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 239

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186
           A+R   L + L+ V+  HN+ A++R+A A    GI       P E   +L   A+G+   
Sbjct: 14  AMRQPDLTVCLEEVHKSHNVAAVIRTADAV---GIPKIHAIWPEEKMRMLVSPAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +       + DA+    + G Q +      K    +EI   +   +I+G E  G+ P+  
Sbjct: 71  VNVNTHPTIADAINTFRAQGMQVLATHLSDKAVDFREIDYTQPTCIIMGQEKTGISPEAI 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 ALADQDIIVPMMGMVQSLNVSVASALILYEAQRQ 164


>gi|165975661|ref|YP_001651254.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307249419|ref|ZP_07531410.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|165875762|gb|ABY68810.1| conserved putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306858561|gb|EFM90626.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 345

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101
           ++ E + +YG +   A        I +L AT     +L D  + L  H      V    +
Sbjct: 104 NRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDILSYLAEHKKAYHVVDRAEM 163

Query: 102 DKIVGKEAVHQG----LALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +++ G E  H G    L  +  P  L   L   R    L++LD VN+  N+G I+R+   
Sbjct: 164 ERVTGTE--HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCAF 221

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           +  +G+I     + + SA  A+ A G LE +  +   +   AL ++ + G+Q + L+ + 
Sbjct: 222 YGVNGVIVESADTLNSSAA-ARVAEGGLEFVRPLETKHKQIALTQLRNAGYQVVHLTRNK 280

Query: 217 K 217
           +
Sbjct: 281 Q 281


>gi|238789531|ref|ZP_04633315.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
           33641]
 gi|238722284|gb|EEQ13940.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
           33641]
          Length = 230

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 11/157 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183
           A R   L + L+ V+ PHN+ AI+R+A A     +     TT+ Y+   SA  + S    
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSSAAGSNSWVQV 73

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             H      S++ DA+  + S G Q +    SD+     +        +++G E  G+  
Sbjct: 74  KTH------SHIADAITHLKSQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGISQ 127

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +    A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 128 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|308810773|ref|XP_003082695.1| CR004 protein (ISS) [Ostreococcus tauri]
 gi|116061164|emb|CAL56552.1| CR004 protein (ISS) [Ostreococcus tauri]
          Length = 308

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 16/208 (7%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-----PLLSPTLD 127
           A   A AR   +A  P+ F  +     T       E +   +ALETA       L   L 
Sbjct: 8   AGGGAEARDGAEARFPYDFGFEFAGGTTCGT---SEMIS--MALETASDGRMARLENVL- 61

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           A R   LL V++ V D  N+ A+ RS  A+   C  I+++K  +   S    +++ GAL+
Sbjct: 62  ANRTFDLLPVMEGVYDVGNMLAVCRSTEALGIGCAAIVSSKGLNFKASG---RTSGGALK 118

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                R  + T AL+   S G + +    +   P+         A++ G E  G+  + +
Sbjct: 119 WQRVERFDSTTAALRAAKSRGMRVLTTEFEGAYPMSHYDWTIPTAVVFGNEKTGVSEEAR 178

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +     + M G  ++LN+S AAA+ +
Sbjct: 179 AMSDGGVFIPMYGFTESLNISVAAALVM 206


>gi|53711292|ref|YP_097284.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60679598|ref|YP_209742.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           NCTC 9343]
 gi|253564599|ref|ZP_04842056.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|255011970|ref|ZP_05284096.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           3_1_12]
 gi|265764737|ref|ZP_06093012.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|313149806|ref|ZP_07811999.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|52214157|dbj|BAD46750.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60491032|emb|CAH05780.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           NCTC 9343]
 gi|251948375|gb|EES88657.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263254121|gb|EEZ25555.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|301161080|emb|CBW20617.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           638R]
 gi|313138573|gb|EFR55933.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 175

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD +   HNIG++ R+A AF  + I      +      + K+A GA   + +  ++
Sbjct: 25  LVVVLDDIRSLHNIGSVFRTADAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  + +  + S G+    +       +  E+  D   K A+++G E KG++ +  + +  
Sbjct: 85  NAVETVDNLRSEGYVVYSVEQAEGSIMLDELTLDRSKKYAVVMGNEVKGVQQEVIDHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|307943096|ref|ZP_07658441.1| rRNA methylase [Roseibium sp. TrichSKD4]
 gi|307773892|gb|EFO33108.1| rRNA methylase [Roseibium sp. TrichSKD4]
          Length = 279

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V DP N+G ++R+  A    G++     +   +    ++  G+L H+P I+ +  
Sbjct: 133 VALDRVRDPGNLGTVIRTIDAVGASGVVLVGDCTDPFAVETVRATMGSLFHVPIIKTAK- 191

Query: 196 TDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            DA L     W    +G   +           + + L++G E +GL         ++  +
Sbjct: 192 -DAFLDFAKKWPGPVVGTHLEGSVDYRTADYAEPVLLLMGNEQQGLDASMTRVCKTLIRI 250

Query: 255 HMPGIIKALNVSNAAAVALY-ITQNHF 280
              G   +LN++ A  + LY I +NH 
Sbjct: 251 PQVGQADSLNLAVATGITLYEIRRNHL 277


>gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
 gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
          Length = 175

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA   + +  ++
Sbjct: 25  LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250
           N  DA+  + + G+    +       +  E++ DK    A+++G E KG++ +  + +  
Sbjct: 85  NAVDAVDNLKNEGYIVYSVEQAEGSIMLDELELDKTRKYAIVMGNEVKGVQQEVIDHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
 gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
          Length = 223

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 9/150 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESA-VLAKSASGALE 185
            R   L ++++ VN PHN+ AILR+     CD  G+      S + +      +A G+ +
Sbjct: 17  CRMKNLTVLVEDVNKPHNLSAILRT-----CDAAGVFEANFISKTNAVKTFNSTAQGSQK 71

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
            +      N   A+  + + GF+  G + +S+    +    +     +LGAE  GL  + 
Sbjct: 72  WVKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNEL 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS AA++ L+
Sbjct: 132 ISMVDQSIFIPMRGMVQSLNVSVAASILLF 161


>gi|262278148|ref|ZP_06055933.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
 gi|262258499|gb|EEY77232.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
          Length = 258

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 19/242 (7%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFP 92
           N + +H    +   L G H   A L    +K+F L  T+ AL   D     + +  H F 
Sbjct: 25  NARKKH----QQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHEDLKEIIELHQGHIFV 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +  V  + +  +         LA+   P  + T+D   ++   ++L+++ DP N+G +LR
Sbjct: 80  ISEVLYRDLSTLGTSLPC---LAIIDLPKTASTIDYNVDT---LILENIQDPGNVGTLLR 133

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A +   II T+  +   S  + ++  GA   +       LTD L K     F T   
Sbjct: 134 SAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDILPKFPIPVFVT--- 190

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           SS     L  +  +     ILG EG+G      + A  +  +  PG  ++LNV+ A ++ 
Sbjct: 191 SSHHSTSLYSQDLSKPCVWILGNEGQGASDYALDHAQCVT-IPQPGGQESLNVAIAGSIC 249

Query: 273 LY 274
            +
Sbjct: 250 FF 251


>gi|145632669|ref|ZP_01788403.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|144986864|gb|EDJ93416.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
          Length = 351

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 19/202 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96
           ++ E + +YG +   A     +  I +L AT          L+ L  +    H      V
Sbjct: 113 NRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYH-----VV 167

Query: 97  PPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             + + ++ G E  H G+ L      A  L   LD       L++LD+VN+  NIG +LR
Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLR 226

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +   F    I+     +    A + + A G  E+I  +   ++  AL  +   G+Q I +
Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHV 285

Query: 213 SSDSK-KPLEQEIKNDKIALIL 233
           S + +  PL++    +K+  +L
Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307


>gi|119513673|ref|ZP_01632675.1| rRNA methylase [Nodularia spumigena CCY9414]
 gi|119461678|gb|EAW42713.1| rRNA methylase [Nodularia spumigena CCY9414]
          Length = 261

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 116/287 (40%), Gaps = 49/287 (17%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIF 69
           + SL++S   ++R+ H         + K RH  Q     L G H +  A  +N P   + 
Sbjct: 2   LTSLQNSLVKQIRKLH---------STKERHKQQL--CLLEGTHLLQEACVVNYPLVTVC 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLD 127
                + A   L W+A   H   V+         IV KE +   +A    P  +++    
Sbjct: 51  CTPEWQTAHPEL-WEAACSHSDRVE---------IVSKE-ILAAIATTVQPDGVVATAQR 99

Query: 128 AVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           A+  +Q     L++ L+ + DP N+G I+R+A A    G+  +      +S  + ++++G
Sbjct: 100 AINQTQVPFTGLVLALETIQDPGNLGTIIRTAAATGATGLWLSDDSVDLDSPKVLRASAG 159

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIG---------LSSDSKKPLEQEIKNDKIALIL 233
               +      +L   +Q+    G Q +             D +KP           ++L
Sbjct: 160 QWFRVATAVSQDLKATIQQSQQAGMQVVATLPTANLTYWDVDWRKP---------SLILL 210

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G EG GL P     A     + +   +++LNV+ AAA+ +Y  Q   
Sbjct: 211 GNEGAGLSPDLASMADKQVKIPLSSGVESLNVAIAAALMMYEAQRQI 257


>gi|326334333|ref|ZP_08200547.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693492|gb|EGD35417.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 261

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189
           L+++ +    P NIGA+LR+A A   D +      T  Y+P+    + +S+ G L  +P 
Sbjct: 115 LILIAEAPEKPGNIGALLRTADAAGVDAVCIANPKTDLYNPN----VIRSSVGTLFTVP- 169

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  ++  + L  +    F     +  +  P +      + A+++G E  GL P+    ++
Sbjct: 170 IATASTKEILSFLQKENFTIYCAALSASVPYDSVSYRGRTAIVVGTEDVGLSPQWLSASS 229

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G I ++NVS +AAV ++
Sbjct: 230 KNIIIPMRGKIDSMNVSTSAAVLIF 254


>gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
 gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
          Length = 231

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +     +  S    L  SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVHAV--WPTSRMRTLVSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  ++DA+  +   G Q +     ++    +E+   +   ++LG E  G+  +   
Sbjct: 72  NVKTHRTISDAVTHLKDQGMQILATHLSARAVDFREVDYTRPTCVLLGQEKTGITEEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|255994890|ref|ZP_05428025.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
           49989]
 gi|255993603|gb|EEU03692.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
           49989]
          Length = 280

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 84/183 (45%), Gaps = 4/183 (2%)

Query: 93  VKTVPPQTIDKIVG-KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           VK    Q + K+   K A H    L+ +  +    +    S+ ++ L  + DP N+GAI+
Sbjct: 88  VKCFSSQVMGKLSDDKSAQHIAAVLKKSFFVQAAANKFDLSENILGLCEIQDPRNLGAIM 147

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  G++ +       S  + ++++G  + + +++ ++  D L ++         
Sbjct: 148 RTAAA-TGTGLLLSNDSCDVFSDKVIRTSAGLFDRVGFVQATSREDFLNRLKDRRVFAAA 206

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L+          +KN    +++G EG+GL       AT    + M   + +LNV  AA++
Sbjct: 207 LNEGMIYTNLNGMKN--TCILMGNEGRGLYEDDFNIATDKVFIPMENDVDSLNVGVAASL 264

Query: 272 ALY 274
            ++
Sbjct: 265 FMF 267


>gi|328947262|ref|YP_004364599.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328447586|gb|AEB13302.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 255

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 25/184 (13%)

Query: 111 HQGL-ALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+ A+   P++ P     T   V   +  ++LD V + +N+GAI+RSA  F    I+ 
Sbjct: 73  HQGVVAMIDTPVILPLNTEITARWVEQKEDAVILDRVGNANNLGAIVRSAAFFGIKNIVI 132

Query: 165 TKRYSPSESAVLAKS---ASGALEHIPYIRISN----LTDALQKMHSWGFQTIGLSSDSK 217
                 S+S++   S   A G +E +    + +    L D   KM  +G     L +  K
Sbjct: 133 P--LDESQSSITTSSYRVAEGGMEFVNIYSVRSIPFLLKDMKGKMARFG---TSLKAQKK 187

Query: 218 KPLEQEIKNDKIAL-ILGAEGKGLRPKTQETATSMAHLHMPGI------IKALNVSNAAA 270
               + +  +K AL +LG E KG+  +  +   S+  +   G+      + +LNV+ AA+
Sbjct: 188 VSEMKLLCQEKPALVVLGNEEKGISEEVAQNCDSLVIIPFAGMGEAGPKVDSLNVAQAAS 247

Query: 271 VALY 274
           V +Y
Sbjct: 248 VIMY 251


>gi|160888065|ref|ZP_02069068.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
 gi|156862376|gb|EDO55807.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
          Length = 175

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +  + 
Sbjct: 25  LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           N  +A+  + S G+    +       +  E+   K  K A+++G E KG++ +  + +  
Sbjct: 85  NSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLNKTKKYAVVMGNEVKGVQQEVIDHSHG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 279

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L+ VL HV DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P 
Sbjct: 123 LVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLPV 178

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245
                +  A+Q +   G + +         L+ E+    +    A + G E  GL  +T+
Sbjct: 179 AVGVPVEQAVQGLRGAGVRILAADGAGTDDLDDELDAGTMGGPTAWVFGNEAWGLPEETR 238

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A ++  + + G  ++LN++ AAAV LY
Sbjct: 239 ALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|114331617|ref|YP_747839.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
 gi|114308631|gb|ABI59874.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
          Length = 278

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 4/161 (2%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           + L   P  + ++D+  +S   + L+ + DP N+G+ILRSAVA        +   + S S
Sbjct: 107 MTLVRIPRHTRSVDSYEDS-FCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWS 165

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               ++  GA  H   +RI   +D +Q    +    I  +      +        +    
Sbjct: 166 PKTLRAGMGA--HFS-LRIHEDSDLIQIACQFNGNVIATALAGADNIYHTDLRGPVMFAF 222

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G EG G+  +  E       + MPG  ++LNV+ AAA+ L+
Sbjct: 223 GNEGCGVSEELLEVVRERVAIPMPGCAESLNVAAAAAICLF 263


>gi|194246610|ref|YP_002004249.1| rRNA methylase [Candidatus Phytoplasma mali]
 gi|193806967|emb|CAP18399.1| rRNA methylase [Candidatus Phytoplasma mali]
          Length = 238

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 77/147 (52%), Gaps = 10/147 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G +LRSA+AF  + ++ ++  +   +    +++ GA+ ++ Y +  N
Sbjct: 93  VLVLDDIQDPSNLGVLLRSALAFGFNQVLLSENSASFYNEKTIRASQGAIFYL-YFQRGN 151

Query: 195 LTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETA 248
           L   LQ   +  ++    L   +KK L  +  N      K  L+LG EG G+    +   
Sbjct: 152 LEYLLQNFKNKNYKIFSSLVRKNKKTLSIDQLNKFPEDVKKILVLGNEGAGISHNIE--L 209

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALY 274
            +   L++P   +++LNVS A ++ ++
Sbjct: 210 ITDYFLNIPTKKVESLNVSVAGSILMH 236


>gi|326577747|gb|EGE27623.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
          Length = 258

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + D  NIG +LR+  A     +IT+   +   S    ++  GA   I       +
Sbjct: 114 LILDGLQDLGNIGTLLRTTSAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSISIYEHIAV 173

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + LQK+ +  + T   SS + K +        IA +LG EG+G+R +    A  +A L 
Sbjct: 174 DEILQKLKTPLYAT---SSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNAIPIA-LP 229

Query: 256 MPGIIKALNVSNAAAVALY--ITQNHF 280
            PG  ++LNV  A +V  Y  + Q H+
Sbjct: 230 QPGGQESLNVGIAGSVCFYEMLRQRHY 256


>gi|53713569|ref|YP_099561.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60681852|ref|YP_211996.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|253565559|ref|ZP_04843014.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265763891|ref|ZP_06092459.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52216434|dbj|BAD49027.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493286|emb|CAH08070.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|251945838|gb|EES86245.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256499|gb|EEZ27845.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163344|emb|CBW22894.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 253

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 21/172 (12%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            Q LAL   P     ++A+RNS L + LD + DP N+G I+R A  F  + I      SP
Sbjct: 83  QQVLALFEQPEYEIDMEAIRNS-LCLALDDIQDPGNLGTIIRLADWFGIEHIFC----SP 137

Query: 171 SESAVL-AKSASGALEHIPYIRI--SNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKN 226
           +   V   K+    +  I  +++  + L D    MHS G     G   D +   EQ +  
Sbjct: 138 NTVDVFNPKTIQATMGGIARVKVYYTALPDL---MHSLGNVPVYGTLLDGENMYEQPLSK 194

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272
           + I +I+G EG G+ P+ ++       L++P         ++LNV+ A A+ 
Sbjct: 195 NGI-IIMGNEGNGISPEIEKLVNR--KLYIPNYPAERETSESLNVAIATAIV 243


>gi|319775649|ref|YP_004138137.1| methyltransferase [Haemophilus influenzae F3047]
 gi|329122299|ref|ZP_08250887.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116]
 gi|317450240|emb|CBY86456.1| predicted methyltransferase [Haemophilus influenzae F3047]
 gi|327473860|gb|EGF19277.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116]
          Length = 351

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 19/202 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLAT-------KNALARLDWDANLPHPFPVKTV 96
           ++ E + +YG +   A        I +L AT        + L+ L  +    H      V
Sbjct: 113 NRAEEMKVYGENACLALFAERPESIVRLWATVQMSHKIGDVLSYLAENKKAYH-----VV 167

Query: 97  PPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
             + + ++ G E  H G+ L        +L   LD       L++LD+VN+  NIG +LR
Sbjct: 168 DSEELARVSGTEH-HGGICLLVKKPRVFMLQGYLDIPHKEDCLVLLDNVNNAQNIGGVLR 226

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +   F    I+     +    A + + A G  E+I  +   ++  AL  +   G+Q I +
Sbjct: 227 TCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHV 285

Query: 213 SSDSK-KPLEQEIKNDKIALIL 233
           S + +  PL++    +K+  +L
Sbjct: 286 SHNKQGDPLDKVRLKNKVVFVL 307


>gi|170728904|ref|YP_001762930.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|169814251|gb|ACA88835.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 231

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  +NI A++R+A A     I     +   E  V   +ASG+ + +  
Sbjct: 16  RQPDLTLCLDKVHKTNNIAAVIRTADAVGVHQIHAV--WPDIEMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
           I+  ++ DA Q   +   Q +  +        +EI   +  A+ILG E  G+  +    A
Sbjct: 74  IKHYHMDDAQQAFRAQNMQVLATTFSETAVDFREIDYTRPTAIILGNERDGVSQEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+A+ +Y  Q  
Sbjct: 134 GQHIIIPMIGMVQSLNVSVASALVMYEAQRQ 164


>gi|325954299|ref|YP_004237959.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323436917|gb|ADX67381.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 243

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 30/242 (12%)

Query: 40  SRHTSQPENLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           S+   Q  NLF+  GV  V   L   S    + L T N     D   NLP    V  + P
Sbjct: 15  SKKYRQKYNLFVVEGVKNVKEVLK--SNITVKELYTTNQ--NFDAKGNLP----VHYLSP 66

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + KI      ++ LA+   P   P         L +VLD +NDP N+G I+R A  F 
Sbjct: 67  NELKKISFLSTPNECLAVCEIP---PQRSIAPVKGLTLVLDTINDPGNLGTIIRLADWFG 123

Query: 159 CDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
              II +K     Y+P    +++   S A   + Y      TD L+ + ++ +  +G   
Sbjct: 124 ITQIICSKESVDVYNP--KVIMSTMGSFARVAVHY------TDILEVIENYKYPILGAFM 175

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---ALNVSNAAAV 271
           + +   +     + + L++G+E  G+    ++  T+   + +P I K   +LNV+ A ++
Sbjct: 176 EGESIFQFPFPENAM-LVMGSEAHGISKAVEDKITN--KISIPAIGKQTESLNVAMATSI 232

Query: 272 AL 273
            +
Sbjct: 233 IV 234


>gi|317478097|ref|ZP_07937272.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|316905695|gb|EFV27474.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 175

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +  + 
Sbjct: 25  LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           N  +A+  + S G+    +       +  E+   K  K A+++G E KG++ +  + +  
Sbjct: 85  NSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKYAVVMGNEVKGVQQEVIDHSHG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|126642632|ref|YP_001085616.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 205

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 4/139 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L++V DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       L
Sbjct: 64  LILENVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQL 123

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           TD L K     F T   SS     L  +  +     ILG EG+G      E A S+  + 
Sbjct: 124 TDILPKFDIPVFVT---SSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHAQSVT-IP 179

Query: 256 MPGIIKALNVSNAAAVALY 274
            PG  ++LNV+ A ++  +
Sbjct: 180 QPGGQESLNVAIAGSICFF 198


>gi|284799730|ref|ZP_05984713.2| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
 gi|284796977|gb|EFC52324.1| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
          Length = 263

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 23/183 (12%)

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159
           VG EA+ +  +L  A  +   +D  + + L      +VL+ V DP N G ILRSA A   
Sbjct: 79  VGNEALSKITSLTDADDVMTWIDIPQQAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGV 138

Query: 160 DGIITTKRYSPSESAVLAKSASGA---LEHIPYIRISNLTDALQKMHSW----GFQTIGL 212
             I+ +       S  + ++  GA   L     + +S   +  Q    W    G + IGL
Sbjct: 139 RQIVCSNDSVDIWSPKVLRAGMGAHFLLSIFSRVELSAWMETYQH-QIWATALGGRNIGL 197

Query: 213 -SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D  +P          A + G EG G+    +E A +   + M G  ++LNV+ AA V
Sbjct: 198 YEMDLSQP---------CAWVFGNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATV 248

Query: 272 ALY 274
            L+
Sbjct: 249 CLF 251


>gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1]
 gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1]
          Length = 288

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P
Sbjct: 125 KLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLP 180

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A++ + + G + +      +  L+ E+    +    A + G E  GL  +T
Sbjct: 181 VAVGVPVEQAVEGLRAAGVRILAADGAGEDDLDAELDAGTMGTPSAWVFGNEAWGLPEET 240

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A ++  + + G  ++LN++ AAAV LY
Sbjct: 241 RALADAVVRVPIHGKAESLNLATAAAVCLY 270


>gi|312984341|ref|ZP_07791683.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
 gi|310894266|gb|EFQ43346.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
          Length = 255

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 16/152 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---- 191
           ++LD++ DP N+G I+R+A A   DG++ +   +   +    ++  G+  HI  I+    
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173

Query: 192 --ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             I++  DA   +++       L   S K L    K  ++ALI+G E  G+       A 
Sbjct: 174 DVITDFQDATIPVYA------SLLDRSAKQLPDFEKVPQLALIIGNEAHGISKTIASLAD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LN + AA + +Y    HFA
Sbjct: 228 EKLYIPIKGQAESLNAAVAAGIMIY----HFA 255


>gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C]
 gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C]
          Length = 287

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P
Sbjct: 124 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLP 179

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A++ + + G + +      +  L+ E+    +    A + G E  GL  +T
Sbjct: 180 VAVGVPVEQAVEGLRAAGVRILAADGAGQDDLDAELDAGTMGGPSAWVFGNEAWGLPEET 239

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A ++  + + G  ++LN++ AAAV LY
Sbjct: 240 RALADAVVRVPIHGKAESLNLATAAAVCLY 269


>gi|323466130|gb|ADX69817.1| TrmH family RNA methyltransferase [Lactobacillus helveticus H10]
          Length = 255

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG++ + + +   ++   ++  G+  HI  I+  +L
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPKSADLYNSKTQRAMQGSQFHIDLIK-RDL 172

Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +               D + K L    K  ++ALI+G E  G+       +    ++
Sbjct: 173 ADVITDFQDAAIPVYASMLDKTAKQLPDFEKVSQLALIIGNEAHGVSSTIASLSDEKLYI 232

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            + G  ++LN + AA + +Y    HFA
Sbjct: 233 PIKGKAESLNAAVAAGIMIY----HFA 255


>gi|15827732|ref|NP_301995.1| rRNA methyltransferase [Mycobacterium leprae TN]
 gi|221230209|ref|YP_002503625.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
 gi|13093283|emb|CAC31778.1| putative rRNA methyltransferase [Mycobacterium leprae]
 gi|219933316|emb|CAR71492.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
          Length = 259

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL++    +++P N G ++R A A     +I         +    +S++G++  I  +  
Sbjct: 108 QLVVAAVEISEPGNAGTVIRIADAMGAAAVIFGGYTVDPYNGKCLRSSAGSIFSITVVVA 167

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATS 250
           S+   A+ ++ + G Q +    D +  L++   +     A + G+E  GL  +  E A  
Sbjct: 168 SDAYAAVTELRAAGLQVLATMVDGETSLDEAKPLLGKPTAWLFGSEPHGLSTEIAEAADY 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G +++LNV+  AA+ LY
Sbjct: 228 RVRIPMVGGVESLNVAATAAICLY 251


>gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 279

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P
Sbjct: 122 KLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  + S G + +      +  L+ E+    +    A + G E  GL  +T
Sbjct: 178 VAVGVPVEQAVAGLKSAGVRILAADGAGEDDLDAELDAGTMGGPTAWVFGNEAWGLPEET 237

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A ++  + + G  ++LN++ AAAV LY
Sbjct: 238 RALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|159491280|ref|XP_001703599.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270618|gb|EDO96457.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 148

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 11/142 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--RI 192
           L+VLD V DP N+G ++RSA+AF   G+          +    +++ GA+  +P    ++
Sbjct: 13  LLVLDGVQDPGNLGTLVRSALAFGWHGLFLLPGCCDPLNDKAVRASRGAVLRLPVAAGQL 72

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             L +A +++                       +  +AL+LG+EG+GL    +   + +A
Sbjct: 73  RELQEAAEELG---------LLLLSSSGSGSGCSGGVALVLGSEGQGLSGAVRALCSPVA 123

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
               PG +++LNV  A ++ ++
Sbjct: 124 VPMTPGAMESLNVGVAGSLLMF 145


>gi|167517941|ref|XP_001743311.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778410|gb|EDQ92025.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1541

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++    VN P+N+G + R+   F+ D ++    R   S+       +S    H   ++ 
Sbjct: 1386 LIVAASFVNIPYNLGGLTRTCEIFNADRLVMPDNRVLQSKEYKGVSVSSERWMHFDIVKP 1445

Query: 193  SN-LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             + L + L +    G+  +GL   ++  PL++    ++  L+LG E +G+ PK       
Sbjct: 1446 EDELVEYLVRKRREGYTIVGLEQTAESVPLQEYTFPERTVLVLGEERRGISPKVLAVIDR 1505

Query: 251  MAHLHMPGIIKALNVSNAAAVALY 274
               +   G+ ++LNV  +AA+A+Y
Sbjct: 1506 CVEIPQFGVTRSLNVHVSAAIAIY 1529


>gi|119716688|ref|YP_923653.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119537349|gb|ABL81966.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 237

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKS 179
           P +DA R S+LL +   V DP N G ++R A A   DG++    +   Y+P       ++
Sbjct: 78  PVVDA-RVSRLLAICADVRDPGNAGTVIRCADAVGGDGVVLAGNSVDPYNPKT----VRA 132

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE----QEIKNDKIALILGA 235
           + G+L H+   +  +   A+    S GF    L++D    ++     E+     A + G 
Sbjct: 133 SVGSLFHVRIGQERHPATAVSHARSAGFTV--LAADGAGDVDLFDADELLAGPSAWLFGN 190

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           E  GL  +    A     + + G  ++LN+S AAA+ LY +
Sbjct: 191 EAWGLPEELAALADHRVRIPIYGRAESLNLSTAAALCLYAS 231


>gi|329963702|ref|ZP_08301148.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328527712|gb|EGF54704.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 216

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +
Sbjct: 61  RKLPLVIVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDW 120

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQE 246
             ++N  +A+  +   G+    +       +  E+   K  K A+++G E KG++ +  +
Sbjct: 121 KYVNNSVEAVDNLKKEGYVVYSVEQAEGSIMLDELTLDKTKKYAIVMGNEVKGVQQEVID 180

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     +   G   +LNVS  A + ++
Sbjct: 181 HSHGCIEIPQYGTKHSLNVSVTAGIVIW 208


>gi|111220928|ref|YP_711722.1| putative rRNA methylase [Frankia alni ACN14a]
 gi|111148460|emb|CAJ60131.1| Putative rRNA methylase [Frankia alni ACN14a]
          Length = 299

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 43/232 (18%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           A+LP   PV       +  I G E VH+G   ++   P L+P  D +  ++ ++V + + 
Sbjct: 66  ADLPADVPVYVAGADVLAAITGFE-VHRGALASMCRRPPLAPA-DVLAAARRVLVCEDIV 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
              N+GAI RSA     D ++ + R +        + + G +  +PY R+     AL  +
Sbjct: 124 SHTNLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALGLL 183

Query: 203 HSWGFQTIGLS-----SDSKKPLEQEIKND------------------------------ 227
              GF  + L+     +D  +   Q    D                              
Sbjct: 184 RDAGFTLLALTPAADAADLGEFAAQLATVDPVGSGPPGSGPPDSGTAAPGSTVDPADPAA 243

Query: 228 ----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               ++AL+LG EG GL   TQ  AT+ A + M   + +LNV+  AA+A Y+
Sbjct: 244 GAPARVALLLGTEGAGLSEPTQAAATARARIPMAHGVDSLNVAATAAIACYL 295


>gi|74316633|ref|YP_314373.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
 gi|74056128|gb|AAZ96568.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
          Length = 260

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 8/250 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  +K+++   + SR   +     L G H ++A L         + A     ARL   
Sbjct: 9   RDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTPHTLVRAESCDAARLAAV 68

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           A+      V  V P  +   +   A   G+  E A L   T  A  +  L++VL+ + DP
Sbjct: 69  ADCRQAKTV--VVPDALFAELAPVATPTGVLAEAAWL---TPQAPVDLALVVVLEDIQDP 123

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA+LR+A A      + +K    + S    +   GA   +P   +    D    +  
Sbjct: 124 GNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQGAQFVLP---MQLAADPGSWLRD 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +   ++ L+ ++   L         AL++G EG GL   T   AT+ A + MPG +++LN
Sbjct: 181 FSGTSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMPGRVESLN 240

Query: 265 VSNAAAVALY 274
            S A AVA++
Sbjct: 241 ASAALAVAVF 250


>gi|110636572|ref|YP_676779.1| RNA methylase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279253|gb|ABG57439.1| RNA methylase, SpoU family [Cytophaga hutchinsonii ATCC 33406]
          Length = 176

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 3/153 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           T    + + +++VLD+V   HN+G+  R+A AF  + I          +  + K+A GA 
Sbjct: 16  TFKKTKKTSIIIVLDNVRSLHNVGSFFRTADAFQIEKIYLCGITGTPPNREIHKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLR 241
           E + +         L K+ + G+Q + +    K    Q+    K +K  LI G E  G+ 
Sbjct: 76  ESVEWEHAPLAVGFLPKLKANGYQILSIEQTDKSIALQDFSINKENKYVLIFGNEVYGVS 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  + +     +   G   + NVS    + L+
Sbjct: 136 EEVIKLSDHAIEIPQFGTKHSFNVSVTGGIVLW 168


>gi|41407453|ref|NP_960289.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395805|gb|AAS03672.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 263

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V   +++P N G ++R A A    G++         +    ++++G++  +P    
Sbjct: 108 RLIAVAVQISEPGNAGTLIRLADAMGAAGVLLAGHSVDPYNGKCLRASAGSIFSVPVAAA 167

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
            +L +A+  +   G Q +  + D +  L++  E+     A + G E  GL       A  
Sbjct: 168 PDLREAVAAVREAGLQLLATTVDGEVRLDRAGELLAKPTAWLFGPESHGLPSAVAAAADH 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G  ++LNV++AAA+ LY
Sbjct: 228 RVCIPMAGGAESLNVASAAAICLY 251


>gi|88855453|ref|ZP_01130117.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88815360|gb|EAR25218.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 255

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 32/267 (11%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL------ARLDWDAN 86
           M    +KS   S+     L G  +VS AL      + +L AT  AL      AR    A+
Sbjct: 1   MAKLAKKSAR-SETGLFLLEGPQSVSEALQYRPELLVELYATPTALERHTEIARSAEAAD 59

Query: 87  LPHPFPVKTVPPQTIDKIV--GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           +   F  + V     D +   G  AV +        LL+         +L+ +L+ V DP
Sbjct: 60  IEVEFVSEQVLEAMADTVTPQGVIAVCRQFPTSVKDLLAGA------PKLIAILEEVRDP 113

Query: 145 HNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
            N G I+R+A A   DG+I T R    Y+P     + ++ +G+L H+P     +L   L+
Sbjct: 114 GNAGTIIRAADAAGADGVILTGRSVDLYNPK----VVRATTGSLFHLPVAVGVDLEPVLE 169

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKI-----ALILGAEGKGLRPKTQETATSMAHLH 255
           ++     + I  ++D K       +ND +     A + G E +GL  +    A  +  + 
Sbjct: 170 RVKGADLRVI--AADIKGGDLLAARNDGVLDHPTAWLFGNEARGLTDEHYALADWVISVP 227

Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282
           + G  +++N++ AA+V LY  ++ FA+
Sbjct: 228 IYGHAESMNLATAASVCLY--ESAFAQ 252


>gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 176

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +  ++
Sbjct: 26  LTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 85

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           N  +A+  + + G+    +       +  E+   K+ K A+++G E KG++ +  + +  
Sbjct: 86  NTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYAIVMGNEVKGVQQEVIDHSHG 145

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 146 CIEIPQYGTKHSLNVSVTAGIVIW 169


>gi|262047374|ref|ZP_06020331.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|260572348|gb|EEX28911.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
          Length = 255

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 16/152 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---- 191
           ++LD++ DP N+G I+R+A A   DG++ +   +   +    ++  G+  HI  I+    
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIKRDLA 173

Query: 192 --ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             I++  DA   +++       L   S K L    K  ++ALI+G E  G+       A 
Sbjct: 174 NVITDFQDAAIPVYA------SLLDRSAKQLPDFEKVPQLALIIGNEAHGISKTIASLAD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LN + AA + +Y    HFA
Sbjct: 228 EKLYIPIKGQAESLNAAVAAGIMIY----HFA 255


>gi|171691857|ref|XP_001910853.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945877|emb|CAP72678.1| unnamed protein product [Podospora anserina S mat+]
          Length = 680

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 111/296 (37%), Gaps = 74/296 (25%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV-------KTVPPQTID 102
           FLYG  +V AAL +  RK+++L   +    R   +A+      V       K+VP + + 
Sbjct: 351 FLYGSSSVEAALRSGRRKLYKLYIQQGDDVRESQNADDIKAEKVIRTLAKQKSVPVEVVS 410

Query: 103 KIVGKEAV--------HQGLALETAPLLSPTLDAV------------------------- 129
              G   +        H G  LE + L  P + A+                         
Sbjct: 411 GKYGMRLMSKMSSSRPHNGFVLEASALPQPPIVALGAIPEDPAEYAAKPGFSVELGHQSA 470

Query: 130 --------------RNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                         R S     L++VLD + DP N+GAILRS   F    +  T      
Sbjct: 471 EDVAINGTNDFVYWRKSATHKPLVVVLDRILDPVNLGAILRSVGFFGAAAVAITNYGGTK 530

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------- 223
            + V  K+++GA E +    I++L + L    + G++     +       Q         
Sbjct: 531 ITPVALKASAGAAEEVTIFGINSLPEFLNASRANGWEVYAAVAQEPGATRQRRQVDLFDI 590

Query: 224 -----IKNDKIALILGAEGKGLRP---KTQETATSMAHLHMPGIIKALNVSNAAAV 271
                +K     L+LG+EG+GL     K  +   ++  +    ++ +LNV+ A A+
Sbjct: 591 EKTDPLKRTPCVLLLGSEGEGLDRLVVKKADYELNIPSMAGQSVVDSLNVNVAGAL 646


>gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 235

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 10/154 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L++V+ PHN+ AI+R+     CD +   + ++  E     +  + A+    +
Sbjct: 16  RQTDLTVCLENVHKPHNVSAIVRT-----CDAVGIHRVHTVWEKKYQFRRGT-AMGSQQW 69

Query: 190 IRISN---LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +R +N   + DA+ ++   G Q +    SD+             A++ G E  G   + +
Sbjct: 70  VRQTNHDGINDAMAELKGQGMQVLVTHLSDTAVDFRDVDYTKPTAILFGQEKYGATDEAK 129

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS AAA+ LY  Q  
Sbjct: 130 ALADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQ 163


>gi|317124678|ref|YP_004098790.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315588766|gb|ADU48063.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 267

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P LS  L A+    ++ VL +V DP N G ++R A A   D ++ +       S  + +S
Sbjct: 103 PTLSAALGALPRDAVVCVLTNVRDPGNAGTVIRGADAAGADLVVVSDSSVDVSSPKVVRS 162

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G+L H+P +    +   L  + + G + +         L +       A ++G E  G
Sbjct: 163 TVGSLWHLPIVTGVPVPVILDALRARGVRLLAADGSGSTLLPEADLTGPHAWVMGNEAWG 222

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L  + ++    +  + + G  ++LN++ AA + LY
Sbjct: 223 LDAEVRDACDEVVRVPIHGRAESLNLAMAAMLCLY 257


>gi|297155951|gb|ADI05663.1| rRNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 277

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P
Sbjct: 114 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLP 169

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  +   G + +      ++ L+ E+    +    A I G E  GL   T
Sbjct: 170 VAVGVPVERAVSGLREAGARVVAADGAGERDLDTELDEGVLGAPTAWIFGNEAWGLPEPT 229

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A  +  + + G  ++LN++ AAAV LY
Sbjct: 230 RALADEVVRVPIHGRAESLNLATAAAVCLY 259


>gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 178

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +  + 
Sbjct: 28  LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTALGAEFTVDWKYVD 87

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  +A+  + + G+    +       +  E+  D   K A+++G E KG++ +  + +  
Sbjct: 88  NAVEAVDNLRNGGYTVYSVEQAEGSIMLNELTLDRTGKYAIVMGNEVKGVQQEVIDHSHG 147

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 148 CIEIPQYGTKHSLNVSVTAGIVIW 171


>gi|150397809|ref|YP_001328276.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150029324|gb|ABR61441.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 275

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 6/198 (3%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL---ETAPLLSPTLDAVRNSQLLMVLDH 140
           A  P   P+        D I G   +H+G LAL   + AP     +  +  S L++    
Sbjct: 75  AQFPPDVPLYVATSAVFDAIAGFN-MHRGVLALGRRDAAPEQEALIAGLPQSSLVLAACG 133

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +++  N+G++ R+A AF  D ++              + + G++  +P+ R     + + 
Sbjct: 134 ISNHDNMGSLFRNAAAFGADAVLMDMASCDPMYRKAIRVSVGSVLTLPFAREGGAAELIG 193

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++ +  F   GLS      +       + AL++G EG+GL P+   +    A +     +
Sbjct: 194 RLQAADFVVWGLSPRGAVDITAIPPAPRTALLVGTEGEGL-PEAILSQIHTARIRQRPGL 252

Query: 261 KALNVSNAAAVALYITQN 278
            +LNV+ AA +AL+   N
Sbjct: 253 DSLNVAMAAGIALHQVAN 270


>gi|227494335|ref|ZP_03924651.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226832069|gb|EEH64452.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 210

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 126 LDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           L+AV  R   L + ++++    NIG+I+R+A A     +    R   +    +       
Sbjct: 56  LNAVKERGKWLEVAIENLGHDFNIGSIVRTANAMGVRHVHIVGRRRWNRRGAMVTDRYMQ 115

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRP 242
           + H P   + +   A+Q+    G + +G+ +  +  PLE+ +      +++G E  GL P
Sbjct: 116 VHHHP--DVESFQAAMQEA---GMRIVGVDNIERSVPLEETVLPLNCVMVMGEESTGLSP 170

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +  + H+   G  +++NV +AAA++++
Sbjct: 171 EMAAISEEIVHITQYGSTRSMNVGHAAAISMW 202


>gi|255038542|ref|YP_003089163.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
 gi|254951298|gb|ACT95998.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
          Length = 178

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++D  R S+   L++VLD++   +NIG+  R+A AF  + I+            + +SA 
Sbjct: 13  SVDEFRESEKFPLVIVLDNIRSLNNIGSFFRTADAFRAEKIVLCGYTQQPPHREITRSAL 72

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGK 238
           GA   + + +  +  DA+  + S G+    +       L Q+ +    D  A + G E +
Sbjct: 73  GAEMAVAWEKNPSAVDAVNALKSQGYNVWCVEQAEGSVLLQDFEPAAGDPYAFVFGNEVE 132

Query: 239 GLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274
           G+  +    A S   L +P  G   + NVS +A + L+
Sbjct: 133 GVADEV--IAASDGCLEIPQFGTKHSFNVSVSAGIVLW 168


>gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 225

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 19/165 (11%)

Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-------TKRYS 169
           P     +DAV   R   L +V++   DP N+ A+LR+  AF   G+ T        K Y 
Sbjct: 11  PERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAF---GVQTLHAIEGPMKPYD 67

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
            ++     K +  A + +   R S+  + L  + S GF        +   P+       K
Sbjct: 68  RNK-----KISQNADKWLDVRRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGK 122

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +AL+ G E +G+  +    A +   + M G +++LNVS AAA++L
Sbjct: 123 VALVFGNEQRGVSEEALALADACYAIPMRGFVQSLNVSVAAAISL 167


>gi|254457129|ref|ZP_05070557.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
 gi|207085921|gb|EDZ63205.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
          Length = 259

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 6/181 (3%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V    +  IVG +  H  +   T P    +L+A+ ++  +++LD +    N+G+I RSA 
Sbjct: 77  VDKDEMQNIVGHKIHHNCMMHGTRPD-ETSLEALGDN--ILMLDAITSTENVGSIARSAA 133

Query: 156 AFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           A   D  +   R SP      A   S G +  +      +++  +Q++   G++      
Sbjct: 134 ALGVDSYLLP-RQSPHPYGRRALRVSMGYVSKLKVHIYEDISQTIQELKKDGYRIYAAEV 192

Query: 215 DSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                L  ++K+  K  L++G EGKG+  +  +    +  + M   +K+ NVS AA++ +
Sbjct: 193 TPDATLLSQVKSPQKWVLLMGHEGKGISQEVLDICDEVLSIEMAPGVKSFNVSVAASIMM 252

Query: 274 Y 274
           Y
Sbjct: 253 Y 253


>gi|149276476|ref|ZP_01882620.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
 gi|149232996|gb|EDM38371.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
          Length = 219

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   HNIG+I R+   F+   +      +      + K+A GA + + +    
Sbjct: 68  LVVVLDNVRSMHNIGSIFRTGDGFAITQLCLCGITAQPPHREIEKTALGATQSVDWKHYE 127

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250
           +  +A++ +   G+  I +   S   +    K   + K ALI G E  G+  +  E    
Sbjct: 128 STLEAVKALREEGYLIIAVEQASGSTMLNTFKPQQDQKYALIFGNEVNGVSDEVMEVIDE 187

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   + N+  +A + L+   + FAK
Sbjct: 188 CIEIPQFGTKHSFNIVISAGIVLW---DFFAK 216


>gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
 gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
          Length = 175

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA   + +  + 
Sbjct: 25  LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVD 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N  DA+  +   G+    +       +  E++ D   K A+++G E KG++ +    +  
Sbjct: 85  NAVDAVDNLRKAGYMVYSVEQAEGSIMLDELELDKSKKYAIVMGNEVKGVQQEVINHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|299145105|ref|ZP_07038173.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
 gi|298515596|gb|EFI39477.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
          Length = 175

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA   + +  ++
Sbjct: 25  LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250
           N  DA+  + + G+    +       +  E++ DK    A+++G E KG++ +    +  
Sbjct: 85  NAVDAVDNLKNEGYIVYSVEQAEGSIMFDELQLDKTKKYAIVMGNEVKGVQQEVINHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22]
 gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
 gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22]
          Length = 175

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA   + +  ++
Sbjct: 25  LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250
           N  DA+  + + G+    +       +  E++ DK    A+++G E KG++ +    +  
Sbjct: 85  NAVDAVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKGVQQEVINHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
          Length = 296

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +QL++VL  V DP N G I+R A A   D ++ T       +    +S +G+L H+P 
Sbjct: 138 KEAQLIVVLSQVRDPGNAGTIIRLADAAGADAVVLTSSSVDIYNDKTVRSTAGSLFHVPV 197

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-----PLEQEIK-NDKIALILGAEGKGLRPK 243
           +    L +  +   + G Q +   ++ +      P +  +    +   + G E  G+R +
Sbjct: 198 VTGVGLAEVTELARARGLQILAADANDQSHDIHHPWDSGLDLTARTTWVFGNEAWGMRTE 257

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E   S A + + G  ++LN++ AA+V +Y
Sbjct: 258 DLELCDSSAAVPIYGKAESLNLATAASVCIY 288


>gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
 gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
          Length = 260

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 4/141 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++L+ + DP N+G++LRSA A   + +  +   + + S    +   GA   +P +  +
Sbjct: 114 FLLMLEDIQDPGNLGSMLRSAAAAGVEVVYLSLGCADAWSPKALRGGQGAQFILPIVERA 173

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L +       +  QT+  +   +   E +++    A ++G EG GL     + A+    
Sbjct: 174 DLENV---TRGFAGQTLATTLMGESLYEMDLQ-PPTAFMIGNEGTGLSETLIKAASRQVS 229

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G +++LN + A A+ L+
Sbjct: 230 IPMAGQVESLNAAAATAICLF 250


>gi|116179962|ref|XP_001219830.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
 gi|88184906|gb|EAQ92374.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
          Length = 647

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 23/170 (13%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P LSPT     +  L+++LD + DP N+GAILR+A       +  T+  S   + V  K+
Sbjct: 449 PTLSPT-----HKPLVLILDQILDPGNLGAILRTASFLGATAVGITRHGSAPLTPVALKA 503

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTI-----GLSSDSKKPLEQEI---------K 225
           +SGA E +    +S+L + L    + G+        G SS+ ++    ++         K
Sbjct: 504 SSGAAESLSLFSVSSLPEFLNASRANGWAVYAAVAEGPSSERRQRRHVDVRDVTETDPLK 563

Query: 226 NDKIALILGAEGKGLRP---KTQETATSMAHLHMPGI-IKALNVSNAAAV 271
            +   L++G EG+GL     K  +   ++ +L MPG  + +LNVS A  +
Sbjct: 564 REPCVLLVGNEGEGLSRLVVKKADYEVNVPNLAMPGSGVDSLNVSVAVGL 613


>gi|21673707|ref|NP_661772.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
 gi|21646829|gb|AAM72114.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
          Length = 229

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAK--SASGALEH 186
           R + L +V+D+VN PHN+ AI+R     SCD +   + ++ S  S++  K  +A+GA   
Sbjct: 30  RQTDLTLVMDNVNKPHNLAAIIR-----SCDAVGIHQVHAISYRSSIKTKQHTAAGASRW 84

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +      +     +K+   G Q +      +    + I   +  A+++G E KG   +  
Sbjct: 85  LKVHLNESFVPVGEKLRQSGMQILVAHYCPEAVNFRSIDYTRPTAIVMGEELKGPSQEAL 144

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A +  ++ M G++++LNVS AAA+ L+  Q  
Sbjct: 145 GLADNFIYIPMMGMVESLNVSVAAALILFEAQRQ 178


>gi|189500046|ref|YP_001959516.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
 gi|189495487|gb|ACE04035.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
          Length = 180

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 2/141 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L ++   +N+G++ R+A A   D +I T   +      + K+A GA E + +   ++ 
Sbjct: 31  VLLHNIRSMYNVGSVFRTADAAGIDRLIITGYTATPPRKEIDKTALGAQESVDWEYYTHP 90

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAH 253
            + L  +   G    GL  +++ +P     K+D  + LILG E  G+     +    +  
Sbjct: 91  EEILGVLKDSGVTICGLEITENSRPYTDIKKDDFPLCLILGNEVDGIDDDVLQFCDHVFE 150

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G   +LNVS AA VALY
Sbjct: 151 IPQYGTKHSLNVSVAAGVALY 171


>gi|206895377|ref|YP_002246755.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737994|gb|ACI17072.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 253

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 110/248 (44%), Gaps = 23/248 (9%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++ KK+ S ++K+R   +     L G   + A + +   K+ +LL +K+A        +L
Sbjct: 13  KEIKKLLS-SKKARD--EKGQFVLEGPKAIEAYVQS-GGKVLELLYSKDA-------KDL 61

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P    V T     + + V   A  QG+ +  A     T   V   + ++VL+ + DP N+
Sbjct: 62  PKVNAVVTQCAPGVMEAVSDVAGDQGV-IAIAQKRDWTPQQVLKRKRIVVLEQLQDPGNL 120

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+A AF    I+TT         V+   A   L    Y+      +  + +     
Sbjct: 121 GTILRTAAAFDYGVILTTGSADVYNPKVVRALAGNFLAPFVYVTGGEALELCKNLF---- 176

Query: 208 QTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +     S+KP   + K     A++LG EG+GL    +  A   A+  +P  +++LNVS
Sbjct: 177 -VVTTYKSSEKP---DFKWRQPFAIVLGNEGQGLTESWRRIAK--ANAWIPSKVESLNVS 230

Query: 267 NAAAVALY 274
             +A+ ++
Sbjct: 231 VTSAILMW 238


>gi|288799931|ref|ZP_06405390.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333179|gb|EFC71658.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 256

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 16/156 (10%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKS 179
           PT +A   +QL++ LD V DP N+G I+R A  F    I+    T   Y+P    + A  
Sbjct: 98  PTTEATPQNQLILALDGVQDPGNLGTIIRIADWFGIKNIVCSEDTVDVYNP--KVIQASM 155

Query: 180 ASGALEHIPYIRISNLTDALQ-KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            S A   + Y  + N  + +  K+  +     G   D +    Q + +  I +++G EGK
Sbjct: 156 GSVAQVSVNYCDLKNFIENIAPKVPVY-----GTCLDGENIYNQTLSSKGI-IVMGNEGK 209

Query: 239 GLRPKTQETATS---MAHLHMPGIIKALNVSNAAAV 271
           G+    ++  T    + + H    I +LNV+ A A+
Sbjct: 210 GVSTAIKQLFTHKLLIPNYHPQSAIDSLNVAIATAI 245


>gi|332686708|ref|YP_004456482.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
 gi|332370717|dbj|BAK21673.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
          Length = 261

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/256 (20%), Positives = 105/256 (41%), Gaps = 12/256 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++++K+Q    + ++    +   + G H V  A+N        LL +K  +   +W   L
Sbjct: 13  KEWRKLQ----QKKYRQDQKKYIVEGFHLVEEAINTNQSIESILLTSKGKMEWEEW--LL 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              F    +  + +   + K    QG+    A      +  +      ++LD++ DP N+
Sbjct: 67  DKDFSQIIIVSEEVMHYLSKLPTPQGILAIIAMQEEREIKDIMVDGGWLLLDNIQDPGNV 126

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A    G+I  +  +   S    +S  G+  H+  +  S L   L +      
Sbjct: 127 GTMIRTADAAGLAGVILGEGTADIYSTKTLRSMQGSNYHLSILHAS-LPAVLSQFQEKEI 185

Query: 208 QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              G     +     ++K      L++G EG+G+          + H+ M G  ++LNV+
Sbjct: 186 PVFGTEVTQRSVAYTQVKVPHTYGLMVGNEGQGINQSLLTQVDQVIHIPMKGASESLNVA 245

Query: 267 NAAAVALYITQNHFAK 282
            AA + ++    HF +
Sbjct: 246 VAAGILIF----HFEQ 257


>gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
          Length = 281

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L+ VL +V DP N G +LR A A   D +I T      Y+P       +++ G+L H+P 
Sbjct: 123 LVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSLFHLPV 178

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245
                +  A+Q +   G + +         L+ E+    +    A I G E  GL  +T+
Sbjct: 179 AVGVPVDQAVQGLRDAGVRILAADGAGADDLDDELDAGTMGTPTAWIFGNEAWGLPEETR 238

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A ++  + + G  ++LN++ AAAV LY
Sbjct: 239 ALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|172060952|ref|YP_001808604.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
 gi|171993469|gb|ACB64388.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
          Length = 260

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 109/258 (42%), Gaps = 21/258 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    + H  +     L G H  +A L+  +      +AT+ ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAAAYLDTGATPEL-CVATEGALAHAEAQ 65

Query: 85  ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           A +      + V  P  +   +       G  L     + P  + V ++   +VLD V D
Sbjct: 66  AIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVLDGVQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHI-----PYIRISNLT 196
             N+G+ILRSA A     +      + + S+ + +S  GA  L  I     P    + L 
Sbjct: 124 AGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAARLD 183

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             +    S G Q +    D   P         +A + G EG G+    ++ AT    +  
Sbjct: 184 VPVALTDSHGAQAV-FDCDLAGP---------VAWVFGNEGAGVSAFWRDAATHRVTIPQ 233

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNV+ AAAV L+
Sbjct: 234 PGGMESLNVAAAAAVCLF 251


>gi|329889847|ref|ZP_08268190.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845148|gb|EGF94712.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 269

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 111/258 (43%), Gaps = 12/258 (4%)

Query: 26  NHRDYKKMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKI--FQLLATKNALARLD 82
           N  D  ++ +F + K R  +    LF+     V   L + + +     +L  +  L +L 
Sbjct: 7   NDPDDPRIAAFRDVKERDLTGRHGLFIAEGEVVLRVLASEASRCTPVSILIAEKRLEKL- 65

Query: 83  WDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPL-LSPT--LDAVRNSQLLM 136
           W+    LP    V       ++ + G + +H+G LAL   P  + P   LD++    + +
Sbjct: 66  WEVLERLPGDVTVHMASQAVLNAVAGFD-LHRGVLALGRKPEPVEPGALLDSLPERAVAV 124

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           V   + +  N+G + R+A AF    ++  +           + + GA+   P        
Sbjct: 125 VACGIGNHDNMGGLFRNAAAFGAGAVLLDRTCCDPFYRKAIRVSVGAVLRTPMAMGLEAE 184

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             +  +   GF+ + L+  +++ L +     + AL+LG+EG GL P+          + M
Sbjct: 185 AMIDLLQGRGFEVLALTPSAEQTLAELKPGRRTALLLGSEGPGL-PRDIIARCRPVGIRM 243

Query: 257 PGIIKALNVSNAAAVALY 274
            G   +LNV+  +AVAL+
Sbjct: 244 AGGFDSLNVAATSAVALH 261


>gi|270295097|ref|ZP_06201298.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274344|gb|EFA20205.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 175

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +  + 
Sbjct: 25  LVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAIPPHPEMHKTALGAEFTVDWKYVD 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           N  +A+  + S G+    +       +  E+   K  K A+++G E KG++ +  + +  
Sbjct: 85  NSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKYAVVMGNEVKGVQQEVIDHSHG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|228472473|ref|ZP_04057235.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276158|gb|EEK14905.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 264

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 12/196 (6%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGA 149
           +P+  +     +K+  + +    LAL     LS   L   + + LL++ +    P NIGA
Sbjct: 71  YPLTEISLPVYEKLSYRSSTEGILALAQGKDLSLSALSFNKENPLLLIAEAPEKPGNIGA 130

Query: 150 ILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           +LR+A A   D +      T  Y+P+    + +S+ G L  +P I  ++  + L  +   
Sbjct: 131 LLRTADAAGVDAVCIANPKTDMYNPN----VIRSSVGTLFTVP-IATASTEELLHFLAQE 185

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            F     +  +  P +      + A+ +G E  GL P   E ++    + M G I ++NV
Sbjct: 186 DFTLYCAALSASVPYDSVSYKGRTAIAVGTEDVGLSPLWLEASSQNIIIPMRGKIDSMNV 245

Query: 266 SNAAAVALY--ITQNH 279
           S +AAV ++  + Q H
Sbjct: 246 SVSAAVLIFEAVRQRH 261


>gi|170751421|ref|YP_001757681.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657943|gb|ACB26998.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
          Length = 291

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 146 NIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           N+GA  R+A AF  D ++       P     +  SA  AL   P+ R+ +  D L+   +
Sbjct: 136 NVGAAFRNAAAFGADAVLLDGATCDPLYRKSIRVSAGAALIQ-PFARLPDGQDWLRLAET 194

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              + +  S  + + L+      +  LILG EG GL   T   A  +  + M     +LN
Sbjct: 195 LDLRPLAFSPGASETLDARAAPPRALLILGTEGPGLDAATLARARPI-RIPMAAGFDSLN 253

Query: 265 VSNAAAVALY 274
           V+ AA +ALY
Sbjct: 254 VATAAGIALY 263


>gi|22124024|ref|NP_667447.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis KIM 10]
 gi|45439903|ref|NP_991442.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594392|ref|YP_068583.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
 gi|108809496|ref|YP_653412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Antiqua]
 gi|108813973|ref|YP_649740.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Nepal516]
 gi|145601108|ref|YP_001165184.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Pestoides F]
 gi|150260899|ref|ZP_01917627.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           CA88-4125]
 gi|153947104|ref|YP_001399039.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 31758]
 gi|162419568|ref|YP_001604683.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
 gi|165926178|ref|ZP_02222010.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936350|ref|ZP_02224919.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011464|ref|ZP_02232362.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213686|ref|ZP_02239721.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402131|ref|ZP_02307608.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419397|ref|ZP_02311150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426644|ref|ZP_02318397.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468213|ref|ZP_02332917.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis FV-1]
 gi|218927258|ref|YP_002345133.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis CO92]
 gi|229836148|ref|ZP_04456316.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           A]
 gi|229839886|ref|ZP_04460045.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229841968|ref|ZP_04462123.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904503|ref|ZP_04519614.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|270488503|ref|ZP_06205577.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
 gi|21956767|gb|AAM83698.1|AE013610_10 putative RNA methylase [Yersinia pestis KIM 10]
 gi|45434758|gb|AAS60319.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51587674|emb|CAH19274.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777621|gb|ABG20140.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|108781409|gb|ABG15467.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua]
 gi|115345869|emb|CAL18727.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
 gi|145212804|gb|ABP42211.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           F]
 gi|149290307|gb|EDM40384.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           CA88-4125]
 gi|152958599|gb|ABS46060.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352383|gb|ABX86331.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
 gi|165915964|gb|EDR34572.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922038|gb|EDR39215.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989610|gb|EDR41911.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205088|gb|EDR49568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963391|gb|EDR59412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048506|gb|EDR59914.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054333|gb|EDR64150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678621|gb|EEO74726.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|229690278|gb|EEO82332.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696252|gb|EEO86299.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706596|gb|EEO92602.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           A]
 gi|270337007|gb|EFA47784.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
 gi|320013391|gb|ADV96962.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 230

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 11/155 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183
           A R   L + L+ V+ PHN+ AI+R+A A     +     TT+ Y+   +A  + S    
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSAAAGSNSWVQV 73

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242
             H P+I      DA+  + S   Q +      K    +EI   +   +++G E  G+ P
Sbjct: 74  KTH-PHI-----ADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISP 127

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    A     + M G++++LNVS A+A+ LY  Q
Sbjct: 128 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQ 162


>gi|311064540|ref|YP_003971265.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
 gi|310866859|gb|ADP36228.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
          Length = 289

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 19/148 (12%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N G ++R+A A  CD ++         +  + ++ +G+L HIP      +T  +
Sbjct: 135 QVRGPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPV-----MTMGV 189

Query: 200 QKMHSWG----FQTIG---LSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQ 245
            +   W      +T+      +D ++P E       Q++     A+I G E +GL P   
Sbjct: 190 DEFFGWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLL 249

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
                +  + + G  ++LN++ +AA+ L
Sbjct: 250 GRCDDIVRIPLYGKAESLNLATSAAIML 277


>gi|227113296|ref|ZP_03826952.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 230

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHN+ A++R+A A     +     +  S    L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEVHAI--WPTSRMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
                N+ DA+  + + G Q +           +EI   +   ++LG E  G+  +  + 
Sbjct: 73  VKTHRNIGDAVGHLKAEGMQVLATHLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164


>gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
 gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
          Length = 181

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 9/154 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ RS  AF    +      +   +  + K+A G  + + +    
Sbjct: 25  LVVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPPNTEIHKTALGGEDSVDWKYFE 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQETA 248
           +  DA++ +HS G+    +         Q +++        A+I+G E KG++    + +
Sbjct: 85  HTEDAIKALHSQGYYVYCVEQVEGSTKLQNLQSTLDTTQHYAIIMGNEVKGVKQSVVDLS 144

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +   +   G   +LNVS  A + ++     FAK
Sbjct: 145 DNCLEIPQFGTKHSLNVSTTAGIVIW----EFAK 174


>gi|288801847|ref|ZP_06407289.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
 gi|288335889|gb|EFC74322.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
          Length = 191

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 17/158 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   HN+G++ RSA AF  + +      +   +A + K+A G  + + +    
Sbjct: 25  LIVVLDDVRSLHNVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTALGGEDSVDWRYFE 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-----------------IALILGAE 236
              DA++++H  G     +         QE+  +                   A++LG E
Sbjct: 85  RTEDAIEELHHQGVFVYSVEQVEGSTKLQELNTENPTNHQHPTPNTQHPVIHYAIVLGNE 144

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            KG++    + +     +   G   +LNVS    + ++
Sbjct: 145 VKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIW 182


>gi|148827623|ref|YP_001292376.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
 gi|148718865|gb|ABQ99992.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
          Length = 371

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           V  + + ++ G E  H G+ L         L   LD       L++LD+VN+  NIG +L
Sbjct: 187 VDSEELARVSGTEH-HGGICLLVKKPRVFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVL 245

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+   F    I+         SA   + A G  E+I  +   ++  AL  +   G+Q I 
Sbjct: 246 RTCAYFGVKNIVADN-VENLYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQVIH 304

Query: 212 LSSDSK-KPLEQEIKNDKIALIL 233
           +S + +  PL++    +K+  +L
Sbjct: 305 VSHNKQGDPLDKVRLKNKVVFVL 327


>gi|237746707|ref|ZP_04577187.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229378058|gb|EEO28149.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 271

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 20/172 (11%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A++T P+L          Q  ++LD + DP N+G+ILRSA A     +  +   + + S 
Sbjct: 106 AVQTCPVLR---------QTAVLLDRIQDPGNLGSILRSAAAAGIARVFCSAGTASAWSP 156

Query: 175 VLAKSASGA---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + ++  GA   LE +  + + ++ +A +         I  +  ++  +        +A 
Sbjct: 157 RVLRAGMGAHFLLEIVENVVLEDVMEASE------IPVIATTPYTETTIYDCDLRLPVAW 210

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           +LG EGKG+R    + A+    +   G +++LNV+  AAV  +  + QN   
Sbjct: 211 LLGHEGKGIRESLLDKASDRVVVPHQGAMESLNVAACAAVCFFEQVRQNRVC 262


>gi|186685767|ref|YP_001868963.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
 gi|186468219|gb|ACC84020.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
          Length = 258

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 2/142 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ L+ V DP N+G I+R+A A    G+  +      +S  + ++++G    +      
Sbjct: 111 LVLALETVQDPGNLGTIIRTAAAVGASGLWVSGDSVDLDSPKVLRASAGQWFRLAMSVTE 170

Query: 194 NLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           NL   +Q+    G Q +  L S +    + + +   + ++LG EG GL       A    
Sbjct: 171 NLKATVQQSQQAGMQVVATLPSATLTYWDVDWRKPSL-ILLGNEGAGLSADLAAIADKQV 229

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + +   +++LNV+ AAA+ LY
Sbjct: 230 RIPLSPGVESLNVAIAAALMLY 251


>gi|259500536|ref|ZP_05743438.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|302191226|ref|ZP_07267480.1| rRNA methylase [Lactobacillus iners AB-1]
 gi|309810255|ref|ZP_07704100.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
           2503V10-D]
 gi|259167920|gb|EEW52415.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|308169527|gb|EFO71575.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
           2503V10-D]
          Length = 255

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A S DG+I + +     ++ + +S  G+  H+  ++ +++
Sbjct: 114 VILDNLTDPGNVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDI 172

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
              L    + G        D    +    K   ++ LI+G E  G+  + Q       ++
Sbjct: 173 EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LN + AA + +Y
Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252


>gi|138897021|ref|YP_001127474.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
 gi|196249846|ref|ZP_03148542.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
 gi|134268534|gb|ABO68729.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
 gi|196210722|gb|EDY05485.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
          Length = 245

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R   + ++++ V+DPHN  A+LR+A AF    + + T R   S + ++ + A    + + 
Sbjct: 50  RTRYITVLMEAVDDPHNQAAVLRTAEAFGIQDVHVVTGRAPFSPNRLVTRYAD---QWLT 106

Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             R  ++  A+  +   G+Q       +   PL +   +    L+ G E  G+  +    
Sbjct: 107 LHRQPDIKTAISDLKQQGYQVYASYLGEGTIPLSEVNVSKPTVLLFGNEHSGVSEEALRL 166

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G +++ N+S AAA+ LY
Sbjct: 167 ADGTFVIPMYGFVQSFNISVAAALTLY 193


>gi|229846510|ref|ZP_04466618.1| rRNA methylase [Haemophilus influenzae 7P49H1]
 gi|229810603|gb|EEP46321.1| rRNA methylase [Haemophilus influenzae 7P49H1]
 gi|309972419|gb|ADO95620.1| Putative rRNA methylase [Haemophilus influenzae R2846]
          Length = 351

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 96  VPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           V  + + ++ G E  H G+ L      A  L   LD       L++LD+VN+  NIG +L
Sbjct: 167 VDSEELARVSGTEH-HGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLDNVNNAQNIGGVL 225

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+   F    I+     +    A + + A G  E+I  +   ++  AL  +   G+Q I 
Sbjct: 226 RTCAYFGVKNIVADNVENLYSGASM-RVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIH 284

Query: 212 LSSDSK-KPLEQEIKNDKIALIL 233
           +S + +  PL++    +K+  +L
Sbjct: 285 VSHNKQGDPLDKVRLKNKVVFVL 307


>gi|145353351|ref|XP_001420979.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357416|ref|XP_001422915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581215|gb|ABO99272.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583159|gb|ABP01274.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 216

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 9/148 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGAL--E 185
           R+  LL +L+ V D  NI A+ R+  A+   C  I+++K  S   S    +++ GAL  +
Sbjct: 42  RSFSLLPILEGVYDVGNILAVCRTTEALGIGCASIVSSKGLSFKASG---RTSGGALKWQ 98

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+     S    AL+   + G++ +    D  +PL         A++ G E +G+  + +
Sbjct: 99  HVEQFETSE--RALRVAKAKGYRVLTTEFDGAQPLSHYDWTVPTAVVFGNEREGVSDEAR 156

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  ++ M G  ++LN+S AAA+ +
Sbjct: 157 ALRDGAVYIPMFGFTESLNISVAAALVM 184


>gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 296

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 12/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L+ VL +V DP N G +LR A A   D +I T      Y+P       +++ G+L H+P 
Sbjct: 138 LVAVLANVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKS----VRASVGSLFHLPV 193

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQ 245
                +  A+Q +   G + +         L+ E+    +    A I G E  GL  +T+
Sbjct: 194 AVGVPVDQAVQGLRDAGVRILAADGAGADDLDDELDAGTMGTPTAWIFGNEAWGLPEETR 253

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A ++  + + G  ++LN++ AAAV LY
Sbjct: 254 ALADAVVRVPIHGKAESLNLATAAAVCLY 282


>gi|240168029|ref|ZP_04746688.1| putative 23S rRNA methyltransferase [Mycobacterium kansasii ATCC
           12478]
          Length = 261

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+ +L+     +++P N G ++R A A     +I         +    ++++G++ +IP 
Sbjct: 105 RSPRLIATAVEISEPGNAGTLIRIADAMGAAAVILAGHSVDPYNGKCLRASAGSIFNIPV 164

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQET 247
           + +++   A+  +   G Q +  + D +  L+    +     A + G E  GL  +    
Sbjct: 165 VAVADTHAAIVSLRGAGLQVLATAVDGETSLDDADPLLGVATAWLFGPESHGLSAEIAGA 224

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G  ++LN++ AAA+ LY
Sbjct: 225 ADHRVRIPMSGRAESLNIAAAAAICLY 251


>gi|170026386|ref|YP_001722891.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186893379|ref|YP_001870491.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           PB1/+]
 gi|294502145|ref|YP_003566207.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
 gi|169752920|gb|ACA70438.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186696405|gb|ACC87034.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           PB1/+]
 gi|262360224|gb|ACY56945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D106004]
 gi|262364170|gb|ACY60727.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D182038]
 gi|294352604|gb|ADE62945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
          Length = 219

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183
           A R   L + L+ V+ PHN+ AI+R+A A     +     TT+ Y+   +A  + S    
Sbjct: 3   ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSAAAGSNSWVQV 62

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242
             H P+I      DA+  + S   Q +      K    +EI   +   +++G E  G+ P
Sbjct: 63  KTH-PHI-----ADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISP 116

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +    A     + M G++++LNVS A+A+ LY  Q 
Sbjct: 117 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQR 152


>gi|223992883|ref|XP_002286125.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977440|gb|EED95766.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 180

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 18/150 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD ++DP N+G +LRS  A     +I         +    +SA GA   +P + ++N 
Sbjct: 25  LILDGLSDPGNVGTLLRSCAASQVTALILLPNSCDVWNPKAVRSAMGASFRVPVLELTNA 84

Query: 196 TD---ALQKMHSWG-FQTIGL---SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--- 245
            D   AL +  S   FQ   +     DSK            A+ILG EG+GLR + +   
Sbjct: 85  DDKDGALDQKKSLAHFQVDWIRHTKDDSK-------SGGGSAIILGREGEGLRREVRAAI 137

Query: 246 -ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + + S  H+ M   +++LN +   +V ++
Sbjct: 138 KQGSISTVHIPMADGVESLNAAVCGSVIMF 167


>gi|163750719|ref|ZP_02157955.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
 gi|161329563|gb|EDQ00555.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
          Length = 231

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 5/150 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188
           R   L + LD V+  +NI A++R+A A    GI       P  E  V   +ASG+ + + 
Sbjct: 16  RQPDLTLCLDKVHKTNNIAAVIRTADAV---GIHQIHAVWPDIEMRVSGNTASGSQQWVK 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
            I+  ++ DA     + G Q +  +   +    +EI   +  A+ILG E  G+  +    
Sbjct: 73  TIKHYHMHDAEAAFRAQGMQILATNFSKEAVDFREIDYTRPTAIILGNEHDGVSAEGIAA 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A     + M G++++LNVS A+A+ +Y  Q
Sbjct: 133 ADQHIIIPMIGMVQSLNVSVASALIMYEAQ 162


>gi|332530820|ref|ZP_08406746.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332039732|gb|EGI76132.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 271

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 21/258 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++ +++   N   R +     +++ G H   AAL    R    +LA     A L W    
Sbjct: 18  KELRRLAQDNTAYRKSGTAGRVWVEGDHLARAALLRGWRPALAVLAES---AWLHWGGEF 74

Query: 88  ---PHPFPVKTV--PPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRNSQL-LMVLD 139
               H    +TV  P      I   E+    QGL L    +    ++A   S L  +VLD
Sbjct: 75  GDASHTGAERTVLLPDALFASISALESFSPAQGLGL----VFDLPVEATVQSGLSTVVLD 130

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-TDA 198
            V D  N+G+ILRSA AF C  ++  K  +   S  + ++  GA  H     +  L  D 
Sbjct: 131 RVQDAGNVGSILRSAAAFGCAQVLALKGTAALWSPKVLRAGMGA--HFGLRLVEGLAADD 188

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +       +  SS   + L +       A +LG EG+G+       A     +  PG
Sbjct: 189 LAVLQ---VPLLVTSSHQGELLHRAHLPWPCAWVLGHEGQGVGEALMARAALKLRIAQPG 245

Query: 259 IIKALNVSNAAAVALYIT 276
             ++LNV+ AAA+ L+ +
Sbjct: 246 GEESLNVAAAAAICLHAS 263


>gi|319638350|ref|ZP_07993112.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
 gi|317400099|gb|EFV80758.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
          Length = 263

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 19/181 (10%)

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159
           VG EA+ +  +L  A  +   +D  + + L      +VL+ V DP N G ILRSA A   
Sbjct: 79  VGNEALSKITSLTDADDVMTWIDIPKQAGLPSDDDCVVLERVQDPGNAGTILRSAAAAGV 138

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS--W----GFQTIGLS 213
             I+ +       S  + ++  GA   +       L+  ++K     W    G + IGL 
Sbjct: 139 KQIVCSNDSVDIWSPKVLRAGMGAHFLLSIFSRVELSAWMEKYQHPIWATALGGRNIGLY 198

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  L Q       A + G EG G+  + +E A +   + M G  ++LNV+ AA V L
Sbjct: 199 ---EMNLSQ-----SCAWVFGNEGSGVSERIKEKAEACVKIPMLGQTESLNVAMAATVCL 250

Query: 274 Y 274
           +
Sbjct: 251 F 251


>gi|315187484|gb|EFU21240.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 265

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 15/177 (8%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-LDHVNDPHNIGAILRSAVAFSC 159
           +D+++G       L+ E    L P     R S  + V L+ +  P+N+GAI RSA AF  
Sbjct: 89  LDELLGTWTADWDLSPEPRGELPP-----RTSLPIWVYLEDLRSPYNVGAIFRSAEAFGA 143

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI  +      +    A++A G    +P+ R+     A  ++ S G   I L +    P
Sbjct: 144 SGIYLSPATPTPDHPRAARTARGTQHLLPWRRL-----APDQVGSLGLPVIVLETRG-TP 197

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP--GIIKALNVSNAAAVAL 273
           +++    ++  +++G E  G+ P+    A +S   + +P  G   +LNVS AA + L
Sbjct: 198 VDEYTFPEQGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILL 254


>gi|254690454|ref|ZP_05153708.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 6 str.
           870]
 gi|254694943|ref|ZP_05156771.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 3 str.
           Tulya]
 gi|256258710|ref|ZP_05464246.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 9 str.
           C68]
 gi|260756006|ref|ZP_05868354.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260885026|ref|ZP_05896640.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261215282|ref|ZP_05929563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|297247542|ref|ZP_06931260.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|260676114|gb|EEX62935.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874554|gb|EEX81623.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916889|gb|EEX83750.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|297174711|gb|EFH34058.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 297

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  I LI+G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 287

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           + LD V DP N+G I+R+A A    G+I    TT  +SP       ++  G++  +P  R
Sbjct: 133 VALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPET----VRATMGSIFSVPLYR 188

Query: 192 ISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQE 246
                       +W   F+ + + +  K  ++    + KN  + L++G E +GL      
Sbjct: 189 FDE-----SAFLNWSTHFKGMIVGTHLKGSIDYRTIDFKNGPVILLMGNEKQGLPDILAN 243

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
               +A +   G   +LN++ A A+ LY
Sbjct: 244 CCDKLARIPQSGRADSLNLAVATAIMLY 271


>gi|186476081|ref|YP_001857551.1| tRNA/rRNA methyltransferase SpoU [Burkholderia phymatum STM815]
 gi|184192540|gb|ACC70505.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phymatum STM815]
          Length = 266

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 21/154 (13%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------ 183
           R +   +VLD V D  N+G+ILRSA A     +      + + S+ + +SA GA      
Sbjct: 110 RVTHGCVVLDGVQDAGNVGSILRSAAAAGIGHVFCAPGTAYAWSSKVLRSAMGAHFLLQI 169

Query: 184 ---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
              +E    I++ ++  A+   H  G + I   +D   P         +A + G EG G+
Sbjct: 170 HEDIEAPTLIQLLDVPVAITDSH--GAEAI-YETDLSGP---------VAWVFGNEGAGV 217

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               ++  T    +  PG +++LNV+ AAAV L+
Sbjct: 218 SQPWRDAVTYRVTIPQPGGMESLNVAAAAAVCLF 251


>gi|157373101|ref|YP_001481090.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
 gi|157324865|gb|ABV43962.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
          Length = 231

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A R   L + L+ V+ PHN+ AI+R+A A    G+       P+     L  SA+G+   
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAV---GVHQVHAVWPTPRMRTLVSSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +  +  ++    +E+   +   ++LG E  G+  +  
Sbjct: 71  VNVKTHPTIVDAVTHLKDQGMQILATNLSARAVDFREVDYTRPTCVLLGQEKTGITEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 131 RLADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 294

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +N+ + + LD V DP N+G ++R+A A    GII     +   S    ++  G++  +P 
Sbjct: 135 KNNDVYIALDRVRDPGNLGTVIRTADAVGAKGIILIGDTTDPYSLETVRATMGSVFSMPL 194

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            +++   D L    +W     GL   +  K  ++       N  + L++G E +GL    
Sbjct: 195 YKVTE-ADFL----NWRKDISGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSL 249

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +T   +A +   G   +LN++ A  V LY
Sbjct: 250 ADTCDKLARIPQAGRADSLNLAIATGVMLY 279


>gi|82699065|ref|YP_413639.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|189023403|ref|YP_001934171.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|237814620|ref|ZP_04593618.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
 gi|254696574|ref|ZP_05158402.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731487|ref|ZP_05190065.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
           292]
 gi|260546424|ref|ZP_05822164.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260759230|ref|ZP_05871578.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760952|ref|ZP_05873295.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|82615166|emb|CAJ10105.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|189018975|gb|ACD71697.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|237789457|gb|EEP63667.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
 gi|260096531|gb|EEW80407.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260669548|gb|EEX56488.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671384|gb|EEX58205.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 297

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  I LI+G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|227485251|ref|ZP_03915567.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236711|gb|EEI86726.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 239

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-AKSASGALEHIPY 189
           +S  +++LD  NDP N+G ++RSA AF    +I      P  + V   K+   ++  I  
Sbjct: 97  SSSKILLLDGTNDPGNLGTMIRSAEAFGFKDVILM----PGTADVYNEKTLRASMGSIFR 152

Query: 190 IRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           + I N T D ++K+ S  ++ +    D    +    K+ KI + +G E  GL  + +E  
Sbjct: 153 LNILNKTYDDIKKLKSC-YRILSADMDG-LDIRNYKKDSKIIIAIGNEANGLSQEMREIT 210

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G I++LN + AA++ +
Sbjct: 211 DEFIKIPMEGEIESLNAAIAASIIM 235


>gi|51598313|ref|YP_072501.1| spoU protein [Borrelia garinii PBi]
 gi|51572884|gb|AAU06909.1| spoU protein [Borrelia garinii PBi]
          Length = 218

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           R + L  VL+ +  P N  A +R+   + FS D  I +KR   ++  +      G+ + I
Sbjct: 31  RTNYLTFVLEDIFQPQNASATIRTGEILGFS-DVHIISKR---NKCTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              R +N   AL ++ S G+  +  S D +   LE    N+K+A+  G E  GL  +  E
Sbjct: 87  NLNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFE 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     + M G  ++ N+S A A+ +Y
Sbjct: 147 AADLYLKIPMHGFTQSYNISVAVAIVMY 174


>gi|312882902|ref|ZP_07742634.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369421|gb|EFP96941.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 227

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A    G+       P+E   L+ +++GA   +  
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADAT---GLHKIHAVWPNEMRTLSHTSAGARNWVDV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
               ++ +A+ ++     Q +  +        ++I   K  A+ILG+E  G   + ++ +
Sbjct: 73  ETHDSIDEAVCQLKEQDMQVLVTNLSPTAVDFRDIDYTKPTAIILGSEKTGASERAKQLS 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + M G++++LNVS A+AV LY  Q
Sbjct: 133 DQDIIVPMVGMVQSLNVSVASAVVLYEAQ 161


>gi|239622239|ref|ZP_04665270.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514236|gb|EEQ54103.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 292

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G ++R+A A  CD +I         +  + +S +G+L H+P + +S  TD  
Sbjct: 138 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS--TDEF 195

Query: 200 ------QKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIA------LILGAEGKGLRPKTQE 246
                   M  W     G  ++ +KP     +  DK A      ++ G E +GL P    
Sbjct: 196 FTWTGDHNMDVWAADVYG--TEERKPESLPAVLADKAAVEAPKTVLFGNEARGLEPDILT 253

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
               +  + + G  ++LN+  +AAV L
Sbjct: 254 RCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|218297027|ref|ZP_03497704.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
 gi|218242582|gb|EED09119.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
          Length = 262

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 10/160 (6%)

Query: 120 PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESA 174
           P+    L  VR  Q  L++VL  +  P N+GAILRSA       ++  +    YSP    
Sbjct: 93  PIPRRALKEVRLPQDPLVLVLLGLEKPGNLGAILRSADGAGAHLVLVAEGVDLYSPQ--- 149

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++++G +  +P   ++   +A + +   G   +  +   ++   +E     +A +LG
Sbjct: 150 -VIRNSTGVVFSLPVFPVAE-EEAARFLEEKGLYPVAATPRGERVYWEEDYRRGVAFLLG 207

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AE +GL     + A +   + M G   +LNV+ +AA+ LY
Sbjct: 208 AEDRGLPEVWLKRAQARVRIPMRGRADSLNVAVSAALLLY 247


>gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
          Length = 297

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  I LI+G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|149248194|ref|XP_001528484.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448438|gb|EDK42826.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 502

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD + DP NIG++LRSA  F  D +I     S     V  K+++GAL+ +   +  
Sbjct: 310 LALYLDEITDPQNIGSVLRSAYFFGVDFVIIPTHASAKLGPVANKASAGALDLLDIYQTH 369

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
                ++KM S G+  +   S + +P    I NDK+   +G
Sbjct: 370 QNMKLIEKMKSNGWSVV---STAGRP---NISNDKLENGVG 404


>gi|152967110|ref|YP_001362894.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151361627|gb|ABS04630.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 264

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%)

Query: 112 QGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           QGL +   P  + TLD V  ++  L+ VLD V DP N G +LR+A A   D ++ T+   
Sbjct: 79  QGL-VAVCPTTTSTLDDVLAARPRLVAVLDRVRDPGNAGTVLRAADAAGADAVVLTEGSV 137

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS------------K 217
              +    +S +G+L H+P +    L DA+  +   G   +    +             +
Sbjct: 138 DPFNPKCVRSTAGSLFHLPVVVGVPLADAVTALRRAGSTVLAADGEGDLDLDDLADAAAR 197

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++        A + G E  GL    +  A ++  + + G  ++LN++ AA V LY
Sbjct: 198 GVVDGVDLRRPTAWVFGNEAAGLDAAGRGLADAVVRVPLHGRAESLNLATAAVVCLY 254


>gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 177

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD++   +NIG++ R+A AF  + I      +      + K+A GA + + +  ++
Sbjct: 25  IVIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAKPPHKDIQKTALGATDSVAWEYVN 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250
                ++++ S  ++T+ +          + K   N K ALI G E KG+       +  
Sbjct: 85  ETLPLIEQLKSNSYETLAVEQAENATFLNDFKITQNQKYALIFGNEVKGVAQDVVTASDV 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G   +LN+S +A V ++
Sbjct: 145 VLEIPQYGTKHSLNISVSAGVVVW 168


>gi|227546236|ref|ZP_03976285.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133084|ref|YP_004000423.1| spou2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481810|ref|ZP_07940838.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688754|ref|YP_004208488.1| rRNA methylase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690746|ref|YP_004220316.1| rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227213217|gb|EEI81089.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|291517171|emb|CBK70787.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
 gi|311774079|gb|ADQ03567.1| SpoU2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916747|gb|EFV38141.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455602|dbj|BAJ66224.1| putative rRNA methylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460090|dbj|BAJ70710.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 292

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G ++R+A A  CD +I         +  + +S +G+L H+P + +S  TD  
Sbjct: 138 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS--TDEF 195

Query: 200 ------QKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI------ALILGAEGKGLRPKTQE 246
                   M  W     G  ++ +KP     +  DK       A++ G E +GL P    
Sbjct: 196 FTWTGDHNMDVWAADVYG--TEERKPESLPAVLADKAAVEAPKAVLFGNEARGLEPDILT 253

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
               +  + + G  ++LN+  +AAV L
Sbjct: 254 RCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|146302736|ref|YP_001197327.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146157154|gb|ABQ08008.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 220

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 8/151 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R     + ++ V   HN  A++RS   F    + I  +R+      +  + A GA + + 
Sbjct: 29  RTKHFTIAVEDVYQMHNTSAVMRSCEVFGIQELNIIEQRFGKR---IDKEIALGAQKWVD 85

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
             R   +   +  +   G+Q I  +      L Q+    K  AL  G E  GL P+  E 
Sbjct: 86  INRFDTVDGCISSLRDKGYQIIATTPHENDCLIQDFDISKPSALFFGTEKDGLSPEILEK 145

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A     + M G  ++LN+S +AA+   I QN
Sbjct: 146 ADGFLKIPMVGFTESLNISVSAAI---IIQN 173


>gi|303258070|ref|ZP_07344078.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
           1_1_47]
 gi|330998717|ref|ZP_08322446.1| RNA methyltransferase, TrmH family [Parasutterella
           excrementihominis YIT 11859]
 gi|302859089|gb|EFL82172.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
           1_1_47]
 gi|329576456|gb|EGG57968.1| RNA methyltransferase, TrmH family [Parasutterella
           excrementihominis YIT 11859]
          Length = 268

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P    ++  +  + LD V DP N+G ILRSA+A     I  + + +   S  + ++A GA
Sbjct: 107 PEEGKIKKDEDWIYLDGVQDPGNVGTILRSALASGVTNIALSPQCAYVWSPKVLRAAMGA 166

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             H     IS++  A  K  +     +  +   K   E++    +   + G+EG G+  K
Sbjct: 167 --HFFCNIISSVELAEIKEKTGAVCLVADARGGKDLYEEKWGKGQTLWVFGSEGLGVSEK 224

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E +     + +   +++LNV+ AA+V L+
Sbjct: 225 ALELSDLTLLIPLDSRVESLNVATAASVCLF 255


>gi|300934218|ref|ZP_07149474.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 236

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 7/150 (4%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +D  R+S  + + +  ND  NIG ++R+A AF+ D +    R   +    +       LE
Sbjct: 80  IDTRRHSLHIAIENFEND-SNIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLE 138

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           H P +      D L+         + + ++    PLE      +  L+ G EG G+ P+ 
Sbjct: 139 HHPTV-----ADVLEYARKHDLTVVAVDNTPGSVPLETADLPKRCLLLFGQEGPGVTPEA 193

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q  AT    +   G  +++N   AA +A++
Sbjct: 194 QAGATQTVSIAQFGSTRSINAGVAAGIAMH 223


>gi|149195670|ref|ZP_01872727.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
 gi|149141132|gb|EDM29528.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
          Length = 262

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + Q++M L  ++   N+G I RSA A      +  ++          + + G +  +   
Sbjct: 111 DEQIIM-LAELSKNDNVGTIARSAAALGVKSYLVPRQGPHPYGRRALRVSMGYISRLKVS 169

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQET 247
              +L + + ++ S G+Q I   + S+  ++    E+ N K  L++G EG GL  K QE 
Sbjct: 170 VYDDLLNTISELQSLGYQVIAAEA-SQHAIDLSTLEVPN-KWVLLMGHEGLGLSQKVQEA 227

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  + M   IK+ NV  AAA+ +Y
Sbjct: 228 CDCVVKIEMDEDIKSFNVGVAAAILMY 254


>gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           schoenbuchensis R1]
          Length = 279

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 18/148 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           + LD V DP N+G I+R+A A    G++    TT  +SP       ++  G++  +P  R
Sbjct: 128 IALDRVRDPGNLGTIIRTADAVGAKGVMLIGETTDPFSPET----VRATMGSIFSVPLYR 183

Query: 192 ISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQE 246
            S          +W   F+ I + +  K  ++    ++K   I L++G E +GL     +
Sbjct: 184 FSE-----SAFLNWSTHFKGIIIGTHLKTSVDYRSVDLKKGPIILLMGNEQQGLPDVLAD 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  +   G   +LN++ A AV LY
Sbjct: 239 RCDQLVRIPQNGRADSLNLAIATAVMLY 266


>gi|227505968|ref|ZP_03936017.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227197490|gb|EEI77538.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 123

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETAT 249
           R++N+T  +Q+  + G+Q +GL +  +  L+      D + +++G+EGKG+    +E   
Sbjct: 29  RVTNVTRTVQEFQNAGYQVVGLDAGGEHTLDTYTGGKDPVVIVIGSEGKGISRLVRENCD 88

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  + M   +++LN S AA   L    + FA+
Sbjct: 89  VIVSIPMTAWVESLNASVAAGAVL----SEFAR 117


>gi|149919144|ref|ZP_01907628.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
 gi|149820074|gb|EDM79495.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
          Length = 287

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 118/258 (45%), Gaps = 16/258 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANL 87
           D  +++ F +  R   +     + G   V   L    R  +  L+ T +  ARL+  A L
Sbjct: 27  DDPRLEPF-RALRGRREDGRFIVEGALAVERLLEQAERFPVESLVCTPSHGARLE--AAL 83

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAP----LLSP-TLDAVRNSQ--LLMVLD 139
           P   P   +P + I ++ G +  H+G LA    P    +L P  ++A+R  +   ++V  
Sbjct: 84  PPGVPAFVLPRKRIAELAGFD-FHRGVLACARRPPTRAVLEPWEIEALRRREQVTVVVAS 142

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+GA++R+A AF  D ++   R + + + +  +++ G +  +P +    L   +
Sbjct: 143 GLADPRNLGALIRNAAAFGVDWVVVDGRGADAFARLTIRASVGNVFRVPLLVSEALPATV 202

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPKTQETATSMAHLHM 256
           +++      T+  ++ + +     +  D+ A   +++G EG GL       A     + +
Sbjct: 203 EQLRRELPATVVAATPAGELELDALAVDRPARQIVLVGNEGAGLDEDALARADRRVRIPV 262

Query: 257 PGIIKALNVSNAAAVALY 274
                ++NV+ A A+ LY
Sbjct: 263 VAGADSVNVAAATAILLY 280


>gi|281212010|gb|EFA86171.1| probable prespore-specific protein [Polysphondylium pallidum PN500]
          Length = 637

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 36/176 (20%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-------KSASGALEH 186
           ++++LD+V +PHNIGAI+RS  +F    +     +  +    +        +++ GA+E+
Sbjct: 373 IVVLLDNVENPHNIGAIIRSCASFGVKTVFAYNEFGANSGGRINPLSTSSYRASRGAMEY 432

Query: 187 IPYIRISNLTDA---LQKMHSWGFQTIGLSS-----------------DSKKPLEQEIKN 226
           +  + I   ++A   ++K  + G+Q I  S                   SK P    + +
Sbjct: 433 VDVVPIDIRSEAINMIKKFVAQGWQVISTSGDNSSSSSSNKNSGDEVVSSKLPSPIRLYS 492

Query: 227 DK---------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D+         + ++ G+E  G+     + +T+   +   G+I  LNVS A ++ L
Sbjct: 493 DRATKLLGVNPLMIVFGSESDGVSKGIVKLSTNTLVIPSTGLIDCLNVSQALSIVL 548


>gi|254252073|ref|ZP_04945391.1| rRNA methylases [Burkholderia dolosa AUO158]
 gi|124894682|gb|EAY68562.1| rRNA methylases [Burkholderia dolosa AUO158]
          Length = 260

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 21/258 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    + H  +     L G H  SA L+  +      +AT+ AL   +  
Sbjct: 7   RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAAPEL-CVATEGALQHAEAQ 65

Query: 85  ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           A +      + V  P  +   +       G  L       P  + V ++   +VLD V D
Sbjct: 66  AIVARVDAQRVVTLPDALFGQLSNVVNGVGFLLLVDRPAQPLPERVAHTS--VVLDGVQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-------LEHIPYIRISNLT 196
             N+G+ILRSA A     +      + + S+ + +S  GA        +  P +    L 
Sbjct: 124 AGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVAPDVLAGRLD 183

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             +    S G Q I    D  +P         +A + G EG G+    ++ AT    +  
Sbjct: 184 VPIALTDSHGAQAI-YDCDLSQP---------VAWVFGNEGAGVSAFWRDAATHRVTIPQ 233

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNV+ AAAV L+
Sbjct: 234 PGGMESLNVAAAAAVCLF 251


>gi|330719322|ref|ZP_08313922.1| rRNA methylase [Leuconostoc fallax KCTC 3537]
          Length = 257

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 104/231 (45%), Gaps = 16/231 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L G H V  A+   + K   ++AT+  +A    D  +PH  P   +  +    I G  +
Sbjct: 31  LLDGWHLVEEAIKVKA-KFHAVMATETQMAEHLPD--VPHGVPAFEISEEVAKHIAGTNS 87

Query: 110 VHQGLALETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             QG+  E + L   T D   V +   L+ LD++ DP N+G ++R+A A    G++    
Sbjct: 88  -PQGIFAEIS-LPEKTFDPKYVHDGAWLL-LDNIQDPGNVGTLVRTADAAGFKGVVLGAG 144

Query: 168 YSPSESAVLAKSASGALEHIPYIR--ISNLTDAL--QKMHSWGFQTIGLSSDSKKPLEQE 223
            + + S  + ++  G+  H+  +   +   TDAL    +  +G     L ++  K     
Sbjct: 145 TADAYSPKVVRAMQGSQFHLEVLNGDLDEWTDALISNDLPVYG----SLLNEEAKSYHDV 200

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  LI+G EG G+     +  T+  ++ + G  ++LNV+ A  + ++
Sbjct: 201 QPATQFGLIVGNEGNGMSAALADKTTANLYIPIQGRAESLNVAIAGGILMF 251


>gi|326336522|ref|ZP_08202692.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691395|gb|EGD33364.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 181

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 125 TLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++D  R ++   +++VLD+V   +NIG++ R+A AF  + I      +      + K+A 
Sbjct: 16  SIDQYRQAEKIPVIIVLDNVRSLNNIGSVFRTADAFRIEKIYLCGITACPPHKDIHKTAL 75

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI--KNDKIALILGAEGK 238
           GA E + +    ++   L+++H    +TI +   +  + L   +  K  K ALI G E +
Sbjct: 76  GATESVTWAYEKDILQLLKELHQSQVETIAIEQVEGAQSLSDFLPEKGKKYALIFGNEVE 135

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G++ +          +   G   +LN+S +A + ++
Sbjct: 136 GVQQEVVSLCGKAIEIPQYGTKHSLNISVSAGIVMW 171


>gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255]
          Length = 265

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  + +++LD + DP N+G I+R+A +   D II  K      +  + +S  G++  +  
Sbjct: 115 KKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDVNI 174

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  S   + +  + S  F  +    +++   ++     K+AL++G E  G+  +    + 
Sbjct: 175 IDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSD 233

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + + G  ++LN + ++A+ +Y
Sbjct: 234 ILVKIPIYGKAESLNAAISSAILMY 258


>gi|23465637|ref|NP_696240.1| rRNA methylase [Bifidobacterium longum NCC2705]
 gi|23326310|gb|AAN24876.1| possible rRNA methylase [Bifidobacterium longum NCC2705]
          Length = 294

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G ++R+A A  CD +I         +  + +S +G+L H+P + +S  TD  
Sbjct: 140 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS--TDEF 197

Query: 200 ------QKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI------ALILGAEGKGLRPKTQE 246
                   M  W     G  ++ +KP     +  DK       A++ G E +GL P    
Sbjct: 198 FTWTGDHNMDVWAADVYG--TEERKPESLPAVLADKAAVEAPKAVLFGNEARGLEPDILT 255

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
               +  + + G  ++LN+  +AAV L
Sbjct: 256 RCGRIVSIPLYGKAESLNLGTSAAVML 282


>gi|120435451|ref|YP_861137.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117577601|emb|CAL66070.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 217

 Score = 49.3 bits (116), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L +V   V   HN  A++RS   F    I   +   P    +  + A GA + +
Sbjct: 27  AQRTDHLTVVAQDVYQLHNTSAVVRSCDVFGIQNIHVIEEKIPRR--IDKEIAMGAQKWV 84

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              R ++ T  L+ +   G++ +  S  D  + LE    +   AL  G E  GL  +   
Sbjct: 85  DINRYTSTTTCLKNLKKKGYRIVATSPHDDSQLLEDFDISTPAALFFGTEKDGLSEEVMR 144

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
            A +   + M G  ++LN+S +AA+ L
Sbjct: 145 EADATVKIPMVGFTESLNISVSAAIIL 171


>gi|322515005|ref|ZP_08068015.1| SpoU protein [Actinobacillus ureae ATCC 25976]
 gi|322118994|gb|EFX91166.1| SpoU protein [Actinobacillus ureae ATCC 25976]
          Length = 365

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 14/183 (7%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQ 99
           ++ E + +YG +   A        I +L AT     +L     + A     + V  V   
Sbjct: 124 NRAEEMKVYGENACLALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEYKKAYHV--VDRA 181

Query: 100 TIDKIVGKEAVHQG----LALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            ++++ G E  H G    L  +  P  L   L   R    L++LD VN+  N+G I+R+ 
Sbjct: 182 EMERVTGTE--HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTC 239

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             +   G+I     + + SA  A+ A G LE +  +   +   AL ++ + G+Q + L+ 
Sbjct: 240 AFYGVSGVIVESADTLNSSAA-ARVAEGGLEFVRPLETKHKQIALTQLRNAGYQIVHLTR 298

Query: 215 DSK 217
           + +
Sbjct: 299 NKQ 301


>gi|221198307|ref|ZP_03571353.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
 gi|221208246|ref|ZP_03581250.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
 gi|221171894|gb|EEE04337.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
 gi|221182239|gb|EEE14640.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
          Length = 260

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 116/266 (43%), Gaps = 37/266 (13%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW 83
           R++  YK++++    + H  +     L G H  SA L+  +  I +L +AT+ AL   + 
Sbjct: 7   RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGA--IPELCVATEGALGHAEA 64

Query: 84  DANLPHPFPVKTVPPQTI----DKIVGKEA-VHQG---LALETAPLLSPTLDAVRNSQLL 135
            A       V  +  Q I    D + G+ + V  G   L L   P  SP L A R +   
Sbjct: 65  QAI------VARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRP--SPPLPA-RVAHTS 115

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-------LEHIP 188
           +VLD V D  N+G+ILRSA A     +      + + S+ + ++  GA        +  P
Sbjct: 116 VVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDVAP 175

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               + L   +    S G Q I    D  +P         +A + G EG G+    ++ A
Sbjct: 176 EALAARLDVPVALTDSHGAQAI-YDCDLSQP---------VAWVFGNEGAGVSAFWRDIA 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +  PG +++LNV+ AAAV L+
Sbjct: 226 AHRVTIPQPGGMESLNVAAAAAVCLF 251


>gi|88799008|ref|ZP_01114589.1| putative tRNA methyltransferase [Reinekea sp. MED297]
 gi|88778235|gb|EAR09429.1| putative tRNA methyltransferase [Reinekea sp. MED297]
          Length = 224

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R + + ++ D V+   N+ AI+R+A +    GI T     P     V   +A GA   + 
Sbjct: 16  RQNDMTILTDKVHKSQNVSAIMRTADSV---GIPTVHMVKPERGRLVYHHTAGGASRFVD 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            I    L++ +Q + + G        SD      +       ALILGAE  G+ P+  + 
Sbjct: 73  VIVYETLSEGIQSLRNAGMALYAAHWSDRAISYREADYTRPFALILGAEKYGISPEAADA 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     + M G  ++LNVS A+ + L
Sbjct: 133 ADEHLIIPMVGACESLNVSVASGIIL 158


>gi|309387057|gb|ADO67778.1| TpaI [Nocardiopsis sp. TFS65-07]
          Length = 269

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 7/188 (3%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P++ V    ++KI   E   +   L   P  +   D       ++VLD V    NIGAI
Sbjct: 74  IPIRLVDYTVVNKIFKGERKAKAFGLARVPRPAKFHDIENRPGDIIVLDGVKIVGNIGAI 133

Query: 151 LRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +R+++     GI  I +   S ++  +L +++ G +  +P + +++   A   +   G +
Sbjct: 134 VRTSLGLGAAGIVLIDSDLTSIADRRLL-RASRGYVFSLPIV-LTDRESAASFIRDSGVE 191

Query: 209 TIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              L S  + PL +EI N   K+ L+ G+E  G   + +E A++   + M    ++LNVS
Sbjct: 192 LAVLDSHGETPL-KEIGNIDRKMTLLFGSEKGGPSERLRELASTTVSIPMISSTESLNVS 250

Query: 267 NAAAVALY 274
            +  V L+
Sbjct: 251 VSVGVTLH 258


>gi|329942536|ref|ZP_08291346.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Chlamydophila psittaci Cal10]
 gi|332287168|ref|YP_004422069.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
 gi|313847764|emb|CBY16754.1| 4.2.3 [Chlamydophila psittaci RD1]
 gi|325506488|gb|ADZ18126.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
 gi|328815446|gb|EGF85434.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Chlamydophila psittaci Cal10]
 gi|328914413|gb|AEB55246.1| spoU rRNA methylase family protein [Chlamydophila psittaci 6BC]
          Length = 265

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
             ++++ V  P N+GAILR A     DG+I        Y+P+    + +S+ G +  +P 
Sbjct: 117 FYLIIEQVEKPGNVGAILRIADGVGADGVILCDPVVDVYNPN----VIRSSLGTVFTLP- 171

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  + L   LQ +    +Q    S  +K     E  N  + L+ G+E  GL     +   
Sbjct: 172 IWSATLDQVLQVILEEKWQAFVTSPRAKTMYFCENYNQPLVLVFGSEKDGLTASWLKGNF 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           S   L M G   +LN+S A +   Y
Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAY 256


>gi|15606763|ref|NP_214143.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
 gi|3915169|sp|O67577|TRMH_AQUAE RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|75765771|pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING
           Enzyme
 gi|2983982|gb|AAC07528.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
          Length = 211

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 14/157 (8%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HI 187
           R   L++  D+V + HN  AI+R     +CD +     Y        AK   G  +  H 
Sbjct: 22  RQKDLIVFADNVKNEHNFSAIVR-----TCDAVGVLYLYYYHAEGKKAKINEGITQGSH- 75

Query: 188 PYIRISNLTDALQKMHSW---GFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            ++ I  + + +QK+  +   GFQ +   LS +S    E +     + L++G E +G+ P
Sbjct: 76  KWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTV-LVVGNELQGVSP 134

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  E A     + M G+ ++LNVS A  + LY  Q  
Sbjct: 135 EIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQ 171


>gi|332827938|gb|EGK00660.1| hypothetical protein HMPREF9455_02934 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 252

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 16/150 (10%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188
           N+QL++ LD + DP N+G I+R A  +    I  T   +   +  + ++  GAL  +   
Sbjct: 100 NNQLVLALDGIQDPGNLGTIVRLADWYGIKHIFCTHDTADIYNPKVVQATMGALARVTIH 159

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           ++ ++   D  + +  +G        D K   EQ+I    I +++G EG G+RP+ ++  
Sbjct: 160 HVDLAGFLDNNKHIPVYGTLL-----DGKNMYEQDITPHGI-IVMGNEGNGIRPEIEKRI 213

Query: 249 TSMAHLHMPG------IIKALNVSNAAAVA 272
           T    L++P         ++LNV+ A A+ 
Sbjct: 214 TK--KLYIPNYPEGNTTSESLNVAIATAIV 241


>gi|319943811|ref|ZP_08018092.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743044|gb|EFV95450.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 328

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 20/160 (12%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P L A      L++LD + DP N+G ILR+A A     ++TT   +   +  + ++  G 
Sbjct: 169 PALPASAPDHDLVILDRIQDPGNVGTILRTAAAAGIRTVLTTAGTAACWAPKVLRAGMGG 228

Query: 184 ------LEHIPYIRISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
                  E+IP  ++     AL    +     Q++  +SD ++PL         A + G 
Sbjct: 229 HFVLEIHENIPLEQLKAQVGALPLAGTVLQDGQSL-YASDLRQPL---------AWVFGN 278

Query: 236 EGKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           EG+G+ P+ Q      +     PG +++LNV+ +AAV L+
Sbjct: 279 EGEGIDPELQARLGCRLTIPQDPG-VESLNVAASAAVCLF 317


>gi|300774979|ref|ZP_07084842.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300506794|gb|EFK37929.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 255

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 21/150 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYI 190
           +++++ V  P N+GAILRS  AF  D +I     T  Y+P+    + +S+ G L  +   
Sbjct: 109 VIIVEGVEKPGNLGAILRSCEAFGIDALIVADGKTDFYNPN----VIRSSVGCLFGMEVY 164

Query: 191 RISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP----KT 244
           +  N    + LQK +S+   T  L  +S + L +     + A++ G E  GL      K 
Sbjct: 165 QAENKETLEFLQK-NSFNIYTT-LMDESAEDLYKRDFRQRSAVLFGTEHSGLSDFWIGKG 222

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + T   MA     G I +LN+SNA A+  Y
Sbjct: 223 KNTLIPMA-----GSIDSLNLSNAVAITCY 247


>gi|315022826|gb|EFT35850.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Riemerella
           anatipestifer RA-YM]
 gi|325336783|gb|ADZ13057.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 231

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYI 190
           +L V++ V    N  AI+RS  A +   ++  ++   + P+ S          +E +P  
Sbjct: 42  ILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEKDNVFDPNLSVTKGADTWVEVEKMPRN 101

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETAT 249
           + S     L+K+   G++ + +S ++   +  + K +  IAL+ G E +G+  +  + A 
Sbjct: 102 KAS-----LEKIKERGYKIVAVSPENNATMLPDYKVETPIALVFGTEWEGVSDELLDFAD 156

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G  K+ NVS AAA+ +Y
Sbjct: 157 ETLAIPMYGFTKSFNVSVAAAICMY 181


>gi|254446967|ref|ZP_05060434.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263106|gb|EDY87384.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 225

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 75/152 (49%), Gaps = 9/152 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +V+++V+ PHN  AI+RS     C+ +   + ++      +  +A   +    +
Sbjct: 16  RQTSLTVVMENVHKPHNFSAIVRS-----CEAVGVHRAHAVYPEGGIGNNAGTTVGAHKW 70

Query: 190 IRIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +++    N+    Q++ + GFQ +    D      +E+   +  A+++G+E  G+  +  
Sbjct: 71  VQVDTHRNIQTPFQQLKAQGFQLLTAHLDETAVDFREVDYTQPTAVVMGSELHGISEEAA 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + A     + M G+ ++LNVS A A+ L+  Q
Sbjct: 131 QLADHSIVIPMLGLTESLNVSVATALILFEAQ 162


>gi|215404054|ref|ZP_03416235.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
 gi|289745918|ref|ZP_06505296.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
 gi|289686446|gb|EFD53934.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
          Length = 259

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PSESAVLAKSASGALEHIPYI 190
           QL+ V   + +P N G ++R  +A +    +   R    P     L ++++G++  IP +
Sbjct: 108 QLIAVTVEIREPGNAGTVIR--IADAMGAAVADHRVGDHPLGGKCL-RASTGSIFAIPVV 164

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETA 248
              ++  A+  + + G Q +  + D +  L+    +  +  A + G E  GL  +    A
Sbjct: 165 VAPDVGAAIADLRAAGLQVLATAVDGEMALDDADRLLAEPTAWLFGPEAHGLSAEIAALA 224

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
               H+ M G  ++LNV+ AAA+ LY
Sbjct: 225 DHRVHIPMSGGAESLNVAAAAAICLY 250


>gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
 gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
          Length = 228

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R   L ++L+ V+ P+N+ A++R+A A    G+       P E    L+ +++GA   + 
Sbjct: 16  RQPDLTLLLEQVHKPNNVSAVIRTADAA---GVHKVHAVWPDEKMRTLSHTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
                 + DA++ + S G Q +  +        ++I   K  A+ILG E  G+       
Sbjct: 73  VETHDTVADAVRTLKSQGMQVLATNLSENAVDFRDIDYTKPTAIILGGEKHGITQDALTE 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ L+  Q  
Sbjct: 133 ADQDIIIPMVGMVQSLNVSVASALILFEAQRQ 164


>gi|315038839|ref|YP_004032407.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|325957278|ref|YP_004292690.1| rRNA methylase [Lactobacillus acidophilus 30SC]
 gi|312276972|gb|ADQ59612.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|325333843|gb|ADZ07751.1| rRNA methylase [Lactobacillus acidophilus 30SC]
 gi|327184008|gb|AEA32455.1| rRNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 255

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG++ +   +   +    ++  G+  HI  I+  +L
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172

Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +               D S K L+   K  ++ALI+G E  G+       +    ++
Sbjct: 173 ADVITDFQDSAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSETIASLSDEKLYI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LN + AA + +Y
Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252


>gi|297621955|ref|YP_003710092.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297377256|gb|ADI39086.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 272

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           PT D    S   +V + +  P N+G ILRS+ A   DG+I   R +   +  + +++ G 
Sbjct: 117 PTPD---GSPFYVVAEAIEKPGNLGTILRSSDAAGVDGLIVCDRCTDIYNPNVVRASVGT 173

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L  +P +      + L+ +       +  +  ++    +      +A+++G E  GL   
Sbjct: 174 LFTVPVLEAEG-EETLKWLKERSISVLAATPHARSLYTEVEMTGPLAIVVGTEQLGLSEL 232

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E A     + M G+  +LNV+ A  + LY
Sbjct: 233 WMEHADIQVRIPMMGVADSLNVATATTLLLY 263


>gi|260172783|ref|ZP_05759195.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|315921069|ref|ZP_07917309.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|313694944|gb|EFS31779.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
          Length = 175

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA   + +  ++
Sbjct: 25  LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250
           N  D +  + + G+    +       +  E++ DK    A+++G E KG++ +  + +  
Sbjct: 85  NAVDVVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKGVQQEVIDHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|303283456|ref|XP_003061019.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457370|gb|EEH54669.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 219

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 86/178 (48%), Gaps = 12/178 (6%)

Query: 106 GKEAVHQGLALETAPLLSPT----LDAV---RNSQLLMVLDHVNDPHNIGAILRS--AVA 156
           G +A  + L     P++SP     LDAV   R+  +L +L+   D  N+ A+ RS  A+ 
Sbjct: 14  GLDASLEDLTRAFTPVISPDRLARLDAVVEQRSFDILPILEGAYDIGNVLAVCRSTEALG 73

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+++       +S    +++ GA++     +  +  DA++     G++ +    + 
Sbjct: 74  IGTLGVVSDTGLKFKQSG---RTSGGAVKWTHLQQWRSTADAVRDAKKRGYRVLTTVFEG 130

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             PLE        A+ILG E +G+  + ++ A    ++ M G  ++LNVS A+++ ++
Sbjct: 131 GHPLEHYDWTVPTAVILGNEREGVSEEAKKLADGGVYVSMNGFTESLNVSVASSLVMH 188


>gi|124267154|ref|YP_001021158.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124259929|gb|ABM94923.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 261

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           AV+     +VLD + D  N+G++LRSA A     ++  K  +   S+ + ++  GA   +
Sbjct: 110 AVQAGVATVVLDRLQDAGNVGSVLRSAAALGVAQVVALKGTAALWSSKVLRAGMGAHFAL 169

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  + + D    + + G   +  SS +   L +         +LG EG+G+       
Sbjct: 170 HLVESAEVGD----LDALGVPLLATSSHAGLALAEGRLPSPCGWVLGHEGQGVGKALLAR 225

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
            +    +  PG  ++LNV+ AAA+ LY
Sbjct: 226 CSETRRIPQPGGQESLNVAAAAAICLY 252


>gi|160915474|ref|ZP_02077685.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991]
 gi|158432594|gb|EDP10883.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991]
          Length = 243

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L +++ V DP N G +LR+  A  CDGII  KR   S    + ++++GA E+I      
Sbjct: 93  FLALVEGVEDPFNFGYVLRTLYAAGCDGIIVGKRNWTSAVNTVTRASAGASEYINIFVSE 152

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSM 251
           ++   +Q+M     Q   L +  K  +     +   K  + +G E +GL       A S 
Sbjct: 153 DMEATIQQMKKQ--QITFLCAQRKDAISLYDYHFPKKCCIAIGGEMRGLSKAV--MAQSD 208

Query: 252 AHLHMPGIIKALNVSNAAA 270
            +L +P   +  N   AAA
Sbjct: 209 QNLFIPYRSEFRNAMTAAA 227


>gi|219684874|ref|ZP_03539816.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
 gi|219671819|gb|EED28874.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
          Length = 218

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 5/147 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R + L  VL+ +  P N  A +R+        + I +KR   ++  +      G+ + I 
Sbjct: 31  RTNYLTFVLEDIFQPQNASATIRTGEILGLSDVHIISKR---NKCTLNPDVTLGSSQWIN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             R +N   AL ++ S G+  +  S D +   LE    N+K+A+  G E  GL  +  E 
Sbjct: 88  LNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFEA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G  ++ N+S A A+ +Y
Sbjct: 148 ADLYLKIPMYGFTQSYNISVAVAIVMY 174


>gi|157149268|ref|YP_001456587.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|157086473|gb|ABV16151.1| hypothetical protein CKO_05108 [Citrobacter koseri ATCC BAA-895]
          Length = 229

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     I     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEIHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHRTIGDAVSHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|219685293|ref|ZP_03540112.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
 gi|219673066|gb|EED30086.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
          Length = 218

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 5/149 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEH 186
           + R + L  VL+ +  P N  A +R+        + I +KR   ++  +      G+ + 
Sbjct: 29  SCRTNYLTFVLEDIFQPQNASATIRTGEILGLSDVHIISKR---NKCTLNPDVTLGSSQW 85

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I   R +N   AL ++ S G+  +  S D +   LE    N+K+A+  G E  GL  +  
Sbjct: 86  INLNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAF 145

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A     + M G  ++ N+S A A+ +Y
Sbjct: 146 EAADLYLKIPMHGFTQSYNISVAVAIVMY 174


>gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281552|gb|ABR89962.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
           Marseille]
          Length = 264

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 9/148 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +Q  ++LD V DP N G+I+RSA A     +  +   + + S  + ++  GA   +  
Sbjct: 114 RLTQSAVLLDKVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAGMGAHFLLEI 173

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L+D L +        I  SS ++K L +      +A + G EG+G+       AT
Sbjct: 174 FEGVDLSDLLGRAD---IPVIATSSHAEKQLYELDLRQPVAWLFGHEGQGVADDLLARAT 230

Query: 250 ---SMAHLHMPGIIKALNVSNAAAVALY 274
              S+ HL   G I++LNV+ ++AV  +
Sbjct: 231 HRISIPHL---GDIESLNVAASSAVCFF 255


>gi|109019959|ref|XP_001102931.1| PREDICTED: probable methyltransferase TARBP1-like [Macaca mulatta]
          Length = 1623

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P ++
Sbjct: 1464 SRLIVVASLIDKPTNLGGLCRTCEVFGASALVVGSLQCISDKQFQHLSVS-AEQWLPLVQ 1522

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   +L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 1523 VKPPHLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1582

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1583 DVCVEIPQQGIIRSLNVHVSGALLIW 1608


>gi|86133430|ref|ZP_01052012.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820293|gb|EAQ41440.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 264

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 29/155 (18%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--------- 184
           L+++ + +  P N+GA+LR+A A + D +I     S   ++ + +S+ G +         
Sbjct: 116 LILIAESLEKPGNVGALLRTADAANVDAVIIANPKSDLYNSNIIRSSVGCVFTNQIAVGT 175

Query: 185 --EHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             E I +++   IS     LQ  + +  +      D KKP          A+++G E  G
Sbjct: 176 SEEIITFLKENKISIYAATLQNSNKYHLE------DYKKPS---------AIVVGTEATG 220

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L    ++ AT   ++ M G I ++NVS AAA+ ++
Sbjct: 221 LSEIWRDKATQNINIPMQGKIDSMNVSVAAAIVIF 255


>gi|212633214|ref|YP_002309739.1| tRNA guanosine-2'-O-methyltransferase [Shewanella piezotolerans
           WP3]
 gi|212554698|gb|ACJ27152.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 217

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188
           R   L + LD V+  +NI A++R+A A    GI       P  E  V   +ASG+ + + 
Sbjct: 5   RQPDLTLCLDKVHKTNNIAAVIRTADAV---GIHEIHAVWPEIEMRVSGNTASGSQQWVK 61

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
               + ++DA+ +      Q +  +        +EI   +  A+ILG E  G+ P+   +
Sbjct: 62  SKAHNKMSDAVAEFRRQDMQILATNFSETAVDFREIDYTRPTAIILGNERDGVSPEGIAS 121

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A A+ +Y  Q  
Sbjct: 122 ADQHVIIPMIGMVQSLNVSVAGALIMYEAQRQ 153


>gi|149372584|ref|ZP_01891696.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
 gi|149354627|gb|EDM43191.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
          Length = 232

 Score = 48.9 bits (115), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R     +V + V   HN  A++RS  AF    + +  +++      V  + A GA + + 
Sbjct: 39  RTKHFTVVTEDVYQIHNTSAVMRSCDAFGIQDLHLVEEKFGKR---VDKEIAMGAQKWVT 95

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247
             R SNL D +  +   G+Q +  S  +      +     K A+  G E  GL     E 
Sbjct: 96  LHRHSNLEDCVSTLKDKGYQIVATSPHADASYLHDFDYTKKSAIFFGTEKDGLTEGVLEQ 155

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A ++  + M G  ++LN+S +AA+ +
Sbjct: 156 ADALIKVPMYGFTESLNISVSAAIIM 181


>gi|116253504|ref|YP_769342.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258152|emb|CAK09253.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 231

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 15/197 (7%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-------ETAPLLSPTLDAVRNSQLLMV 137
             P   PV       +D +VG   +H+G LAL       E A      LDA+    L++V
Sbjct: 33  RFPADVPVYVAGADVLDGVVGFH-LHRGVLALGRRQDRGEAA-----LLDALPERALVLV 86

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
              +++  N G++ R+A AF  D ++  +           + + G++  +P+ R     D
Sbjct: 87  GCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALD 146

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L  +   GF    LS   +  +     + ++AL++G EG+GL P         A +   
Sbjct: 147 VLVALAERGFAIWTLSPHGRTDIRAIPASMRMALVVGTEGEGL-PDALLARFQSARIPQS 205

Query: 258 GIIKALNVSNAAAVALY 274
             + +LN + A  +AL+
Sbjct: 206 EELDSLNAATATGIALF 222


>gi|86142740|ref|ZP_01061179.1| spoU protein [Leeuwenhoekiella blandensis MED217]
 gi|85830772|gb|EAQ49230.1| spoU protein [Leeuwenhoekiella blandensis MED217]
          Length = 217

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 4/154 (2%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    LD  R   L + ++ V   HN  A++RS  AF    I   +        +  + A
Sbjct: 20  LFKQVLDE-RTRFLTVAIEDVGHLHNTSAVMRSCDAFGVQDIHVIEELKGKR--IDREIA 76

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKG 239
            GA +     R  +  +AL K+ S G+Q +  +        ++ K DK  AL  G+E  G
Sbjct: 77  MGAQKWTSVKRYDSTKNALAKLKSEGYQIVATTPHHTAHKLEDFKLDKPTALFFGSEKDG 136

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L     E A    ++   G  ++LN+S  AA+ L
Sbjct: 137 LTETVIEAADEYIYIPTFGFTQSLNISVCAAILL 170


>gi|332667598|ref|YP_004450386.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336412|gb|AEE53513.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 178

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 15/150 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY------SPSESAVLAKSASGALEHI 187
           L+++LD+V    N+G+  R+A     DG   TK Y       P    +L K+A GA E +
Sbjct: 27  LILILDNVRSALNVGSAFRTA-----DGFALTKIYLCGITAQPPHKEIL-KTAIGATESV 80

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKT 244
            +  + +   A+Q + + G+Q + +  +++   LEQ     N K+A++ G E  G+  + 
Sbjct: 81  DWEYVEDPCAAVQALQAAGWQVLAVEQAENSTSLEQYTPPPNAKLAVVFGNEVSGVSDEV 140

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +       +   G   +LN++    + ++
Sbjct: 141 MDIVDGALEIPQYGTKHSLNIAVCVGIVVW 170


>gi|253569078|ref|ZP_04846488.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|251841097|gb|EES69178.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
          Length = 175

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA   + +  ++
Sbjct: 25  LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250
           N  DA+  +   G+    +       +  +++ DK    A+++G E KG++ +  + +  
Sbjct: 85  NAVDAVDNLRKEGYIVYSIEQAEGSIMLDQLELDKTKKYAIVMGNEVKGVQQEVIDHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|319406413|emb|CBI80053.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
           1-1C]
          Length = 280

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           + LD V DP N+G I+R+A A    GII    TT  +SP       ++  G++  +P  R
Sbjct: 128 IALDRVRDPGNLGTIIRTADAAGAKGIILIGETTDPFSPET----VRATMGSIFSVPLYR 183

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETA 248
            +  T      H   F+ + + +  K  ++    + KN  I L++G E +GL        
Sbjct: 184 CNESTFLNWSTH---FKGMIVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVNHC 240

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +A +   G   +LN++ A A+ LY
Sbjct: 241 HKLARIPQCGHADSLNLAVATAIMLY 266


>gi|319403499|emb|CBI77078.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 280

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 14/148 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           + + LD V DP N+G I+R+  A    GII    TT  +SP       ++  G++  +P 
Sbjct: 126 VYIALDRVRDPGNLGTIIRTVDAAGAKGIILIGETTDPFSPET----VRATMGSIFSVPL 181

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQE 246
            R +  T      H   F+ I + +  K  ++    + KN  I L++G E +GL      
Sbjct: 182 YRCNESTFLNWSTH---FKGIIVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVN 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
               +A +   G   +LN++ A A+ LY
Sbjct: 239 HCHKLARIPQCGHADSLNLAVATAIMLY 266


>gi|307717880|ref|YP_003873412.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
           6192]
 gi|306531605|gb|ADN01139.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
           6192]
          Length = 265

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 15/177 (8%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-LDHVNDPHNIGAILRSAVAFSC 159
           +D+++G       L+LE    L P     R S  + V L+ +  P+N+GAI RSA AF  
Sbjct: 89  LDELLGTWTADWDLSLEPRGALPP-----RTSLPIWVYLEDLRSPYNVGAIFRSAEAFGA 143

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI  +      +    A++A G    +P+ R+       +++   G   + L +    P
Sbjct: 144 SGIYLSPATPTPDHPRAARTARGTQHVLPWERLPA-----ERLGGLGLPILALETGG-TP 197

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP--GIIKALNVSNAAAVAL 273
           ++      +  +++G E  G+ P+    A +S   + +P  G   +LNVS AA + L
Sbjct: 198 IDTYPFPPEGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILL 254


>gi|120555648|ref|YP_959999.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325497|gb|ABM19812.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
          Length = 244

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEHIP 188
           R   L ++ D V+ P N+ AI+RS  AF   G+       P E      K+A G+   + 
Sbjct: 16  RQPDLRVLTDQVHKPRNLSAIIRSCDAF---GLANMHVVWPKEGFRAFRKTAGGSFHWVT 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 + +A+ ++ + G +      SD      +        +I+G E  G+ P T E 
Sbjct: 73  THTHPTMDNAVTELKAQGHKLYAAQLSDRAVDFREVDYTVPCTIIMGNEVDGVNPVTAEQ 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     + M G++++LNVS+A ++ L
Sbjct: 133 ADEHIVIPMMGMVESLNVSSACSIIL 158


>gi|225626689|ref|ZP_03784728.1| RNA methyltransferase [Brucella ceti str. Cudo]
 gi|254713278|ref|ZP_05175089.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M644/93/1]
 gi|254716369|ref|ZP_05178180.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M13/05/1]
 gi|256158847|ref|ZP_05456704.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M490/95/1]
 gi|256254228|ref|ZP_05459764.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94]
 gi|260169726|ref|ZP_05756537.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99]
 gi|261218151|ref|ZP_05932432.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261221377|ref|ZP_05935658.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261321001|ref|ZP_05960198.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261759264|ref|ZP_06002973.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265997338|ref|ZP_06109895.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|225618346|gb|EEH15389.1| RNA methyltransferase [Brucella ceti str. Cudo]
 gi|260919961|gb|EEX86614.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|260923240|gb|EEX89808.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261293691|gb|EEX97187.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261739248|gb|EEY27244.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|262551806|gb|EEZ07796.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
          Length = 297

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + LI+G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|301166246|emb|CBW25821.1| putative SpoU rRNA methylase family protein [Bacteriovorax marinus
           SJ]
          Length = 268

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPS-ESAVLAKSASGALEHIPYIRI 192
           +VLD++    N+G++ R+A A    GI  +    Y+P+ E++  AKSA G  + I +   
Sbjct: 119 LVLDNLRSSFNVGSLFRTAEAI---GIKEVHLCGYTPTPENSKTAKSALGTDKWIKWSYW 175

Query: 193 SNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +  D +  +   G       ++ + K LE+  +  + A++LG E  GL       +  +
Sbjct: 176 ESSLDCIDALKERGASIYAFETEKNAKALEEVREIRECAIVLGNERYGLNESVLNRSDEI 235

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + + G   +LNV    A+A+Y
Sbjct: 236 LKIRLDGKKNSLNVGTCGAIAMY 258


>gi|115352088|ref|YP_773927.1| tRNA/rRNA methyltransferase SpoU [Burkholderia ambifaria AMMD]
 gi|115282076|gb|ABI87593.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria AMMD]
          Length = 260

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 21/258 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    + H  +     L G H   A L+  +      +AT+ ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAGAYLDTGATPEL-CVATEGALAHAEAQ 65

Query: 85  ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           A +      + V  P  +   +       G  L     + P  + V ++   +VLD V D
Sbjct: 66  AIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVLDGVQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHI-----PYIRISNLT 196
             N+G+ILRSA A     +      + + S+ + +S  GA  L  I     P    + L 
Sbjct: 124 AGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDALAARLD 183

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             +    S G Q +    D   P         +A + G EG G+    ++ AT    +  
Sbjct: 184 VPVALTDSHGAQAV-YDCDLAGP---------VAWVFGNEGAGVSAFWRDAATHRVTIPQ 233

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNV+ AAAV L+
Sbjct: 234 PGGMESLNVAAAAAVCLF 251


>gi|256060292|ref|ZP_05450465.1| tRNA/rRNA methyltransferase (SpoU) [Brucella neotomae 5K33]
 gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
          Length = 297

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + LI+G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|296140117|ref|YP_003647360.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296028251|gb|ADG79021.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 265

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 71/146 (48%), Gaps = 2/146 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++L+ V   V +P N G ++R A A   D ++         +  + ++++G++ H+P +
Sbjct: 111 GARLVAVPVDVAEPGNAGTVIRVADAVGADAVLLAGDAVDPMNGKVVRASAGSVFHLPVV 170

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETA 248
           +  + + A+ ++   G   +  ++D +  L+   E+     A + G E  GL    Q  A
Sbjct: 171 QERDASAAIAQLKESGLTVLATAADGEVSLDDADEMLAAPTAWLFGNEAHGLPRGLQAAA 230

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + + G  ++LN++ AA++ LY
Sbjct: 231 DHRIAIPIRGRAESLNLATAASICLY 256


>gi|262368611|ref|ZP_06061940.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
 gi|262316289|gb|EEY97327.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
          Length = 258

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 23/252 (9%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++   ++S +  + +   L G H +  A     +K+  +  T+NAL          HP
Sbjct: 15  KHLRGLIEQSSYRKKQDQTVLEGTH-LGLAWVEKRKKLNSIFTTENAL---------EHP 64

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLL------MVLDHVN 142
                +        V  E++++ L+    T P L+  +D   +SQ +      ++L+++ 
Sbjct: 65  DICDILDEYEGAVFVIAESLYRDLSTLGTTLPFLA-VVDLPSSSQSVDFSLDTLILENIQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     +I TK  +   S  + ++  GA   +       + D L++ 
Sbjct: 124 DPGNVGTLLRSAAAAGIKQVICTKGSAALWSPRVLRAGMGAHFSLNTYENVAIEDVLERF 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               + T   SS   + L Q+        ILG EG+G+       A +++ +  PG  ++
Sbjct: 184 EIPVYVT---SSHQAESLYQKDLTQACVWILGNEGQGVSDFALAHAQALS-IPQPGGQES 239

Query: 263 LNVSNAAAVALY 274
           LNV+ A ++  +
Sbjct: 240 LNVAIAGSICFF 251


>gi|332662188|ref|YP_004444976.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331002|gb|AEE48103.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 209

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-------IITTKRYSPSESAVLAKSASG 182
           R   L ++L++V+DPHN+GA+LR     SCD        ++ T+    +    L K  S 
Sbjct: 16  RQFDLTVILENVDDPHNVGAVLR-----SCDSVGIREIFVLYTRPGLQNHKLELGKRTSA 70

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKG 239
                  + +    DA  +     +Q +    L+ D+K   E ++     AL+ G E  G
Sbjct: 71  GSRKWIDVYLYREVDACMEHVRRNYQRVYATHLAHDAKSLYELDLAQ-SAALMFGNEADG 129

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L       A     +   G+ ++LNVS A AV+LY
Sbjct: 130 LSELALSQADGNFIIPQVGMAQSLNVSVACAVSLY 164


>gi|225075264|ref|ZP_03718463.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
           NRL30031/H210]
 gi|224953439|gb|EEG34648.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
           NRL30031/H210]
          Length = 263

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 21/182 (11%)

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159
           VG EA+ +  +L  A  +   +D  + + L      +VL+ V DP N G ILRSA A   
Sbjct: 79  VGNEALSKITSLSDADDVMTWIDIPKQAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGV 138

Query: 160 DGIITTKRYSPSESAVLAKSASGA---LEHIPYIRISNLTDALQKMHSW----GFQTIGL 212
             I+         S  + ++  GA   L     + +S   +  Q    W    G + IGL
Sbjct: 139 RQIVCGNDSVDIWSPKVLRAGMGAHFLLSIFSRVELSAWMETYQH-QIWATALGGRNIGL 197

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                   E ++ +   A + G EG G+    +E A +   + M G  ++LNV+ AA V 
Sbjct: 198 -------YEMDL-SQTCAWVFGNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVC 249

Query: 273 LY 274
           L+
Sbjct: 250 LF 251


>gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 267

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALE 185
           + + N+ L+++LD +  P NIGA+LR+A A     II    +     S V+  S      
Sbjct: 105 EKITNNSLILILDGIEKPGNIGAMLRTADAAGIHIIILCNMKTHIYNSNVIRCSLGSVFT 164

Query: 186 HIPYIR-----ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
              +I      IS L +   K+   GF        +K   + ++    +A+I G+E KG+
Sbjct: 165 RKIFIEKMGSIISWLQENKVKIVGTGFYN---HQKAKNLYKTKLNYSNLAIIFGSENKGI 221

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  A  +  + M G + +LNVS+A ++ +Y
Sbjct: 222 SNIWFNIANKIITIPMFGNVDSLNVSHAMSIIIY 255


>gi|23501061|ref|NP_697188.1| RNA methyltransferase [Brucella suis 1330]
 gi|148559270|ref|YP_001258183.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|161618138|ref|YP_001592025.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163842420|ref|YP_001626824.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|254705329|ref|ZP_05167157.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 3 str. 686]
 gi|256368614|ref|YP_003106120.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260567212|ref|ZP_05837682.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261756040|ref|ZP_05999749.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|294851549|ref|ZP_06792222.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|23346928|gb|AAN29103.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|148370527|gb|ABQ60506.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
 gi|161334949|gb|ABX61254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163673143|gb|ABY37254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|255998772|gb|ACU47171.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260156730|gb|EEW91810.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261745793|gb|EEY33719.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|294820138|gb|EFG37137.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 297

 Score = 48.9 bits (115), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + LI+G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|291537396|emb|CBL10508.1| rRNA methylases [Roseburia intestinalis M50/1]
          Length = 281

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 18/151 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++L+ + DP N+G ++R+       G+I  +      +    +S  G++  +P+    +
Sbjct: 134 LLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRSTMGSIYRVPFFVTKD 193

Query: 195 LTDAL-----QKMHSWGFQTIGLSS----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           L   +     Q+++ +     G+ S    D KK         K A ++G EG GL  +  
Sbjct: 194 LPGTISSLKEQQVNVYAAHLKGMLSYDEPDYKK---------KTAFLIGNEGNGLSDEIA 244

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + A +   + M G +++LN + +A++ +Y T
Sbjct: 245 DLADTYIKIPMQGQVESLNAAISASLLMYET 275


>gi|260903742|ref|ZP_05912064.1| rRNA methylase [Brevibacterium linens BL2]
          Length = 340

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R    + VL+ + D  N+G+  R+A A   D ++ +   +        + + G +  +P+
Sbjct: 190 RRRSRIAVLEGLVDHTNVGSAFRNAAALGLDAVLVSPTCADPLYRRAVRVSMGTVFQVPW 249

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQE 246
            RI      +  + + G+   G++  +    L++ +  D   +AL+ G EG G+ P+T  
Sbjct: 250 TRIPEWEKGIAGLKAAGYVLAGMTLGEGAITLDELVAEDHENLALVFGTEGHGITPETDA 309

Query: 247 TATSMAHLHMPGIIKALN 264
                  + M G + +LN
Sbjct: 310 LLDRRVTIPMMGGVDSLN 327


>gi|86143085|ref|ZP_01061507.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
 gi|85830530|gb|EAQ48989.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
          Length = 268

 Score = 48.9 bits (115), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 31/260 (11%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K++ +  +KSR   +     + GV  ++ AL+    ++ QLL   +A+A  +  A L   
Sbjct: 14  KQLVALQEKSRIRRKTGEFLIEGVREINLALD-AGFQLTQLLFC-SAIADAEELAALQSK 71

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLSPTLDAVR--NSQLLMVLDHVNDPHN 146
              +    +  +++  K A   G    + +A     TL A+    + L+MV +    P N
Sbjct: 72  LSAEVTQIEVTEEVYKKIAYRSGTEGIIASAKAKKNTLSALDLPKNPLIMVAEAPEKPGN 131

Query: 147 IGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYIRISN--LTDALQ 200
           IGA+LR+A A   D  I     T  Y+P+    + +S+ G L  +P    S   + D L+
Sbjct: 132 IGALLRTADAAGVDAFILANPRTDLYNPN----IIRSSVGGLFTVPVATGSTQEVIDFLK 187

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDK------IALILGAEGKGLRPKTQETATSMAHL 254
           + +   +  I         L++ I  +K       AL++G E  GL    +  A     +
Sbjct: 188 QKNIAIYTAI---------LQEAISYEKQDFTTASALVVGTEADGLSEAWRAAAKQNIII 238

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G + ++NVS AAA+ ++
Sbjct: 239 PMQGRLDSMNVSVAAAILIF 258


>gi|194333759|ref|YP_002015619.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
           DSM 271]
 gi|194311577|gb|ACF45972.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
           DSM 271]
          Length = 216

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+D+VN PHN+ AI+R+     CD +     ++ S    + K    A     +
Sbjct: 17  RQPDLTVVMDNVNKPHNLAAIIRT-----CDSVGIETIHAVSNRPSIRKKQKTAGGSTRW 71

Query: 190 IRIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +++S   ++ +    + S G + +     S     + I   +  A+++GAE  G    T 
Sbjct: 72  VQLSLHESMENLANTLKSNGTRLLAAHYSSTSVDFRSIDYTRPTAIVMGAEKLGPSSDTI 131

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  H+ M G+ ++LNVS AAAV L+  Q  
Sbjct: 132 SLVDQAIHIPMQGMAESLNVSVAAAVILFEAQRQ 165


>gi|15807204|ref|NP_295933.1| rRNA methylase SpoU [Deinococcus radiodurans R1]
 gi|6460013|gb|AAF11758.1|AE002054_3 rRNA methylase SpoU [Deinococcus radiodurans R1]
          Length = 230

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 27/165 (16%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLA-------KSAS 181
           R   L +++D VN PHN+ AI+R+     CD +   + ++ P +   LA       ++ S
Sbjct: 18  RQPTLTVLMDEVNKPHNLSAIIRT-----CDAVGVPEAHAVPPKHGTLASFEGHTYEATS 72

Query: 182 GALEHIPYIRI---SNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALIL 233
           G+     ++++   ++   A++++ + GFQ +       S D ++P           ++L
Sbjct: 73  GSAHK--WVKVHPHADAVSAVRELQAQGFQVLATHLSQRSVDYREP----DYTKPTCVLL 126

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GAE  G+  +  E A +   + M G++++LNVS AAA  L+  Q 
Sbjct: 127 GAEKWGVSDEAAEAADANIVIPMFGMVQSLNVSVAAATILFEAQR 171


>gi|108804143|ref|YP_644080.1| tRNA/rRNA methyltransferase SpoU [Rubrobacter xylanophilus DSM
           9941]
 gi|108765386|gb|ABG04268.1| tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM
           9941]
          Length = 223

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 4/144 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +++++L+ V DP N+G ++RSA AF   G+  ++  +   +    +S  G+L  +P  
Sbjct: 76  RGRIVVLLEGVQDPGNVGTVIRSAHAFGA-GVALSRGCADLYNPKTVRSTMGSLFRVPVA 134

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +    L+     GF     +    +P    +    + + +G+EG GL P        
Sbjct: 135 RELDPLAFLELARGAGFGLAAATPGGGEP-PGSMPGGNLVVAVGSEGAGLSPGVVRACG- 192

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + +P    +LN + AA++ LY
Sbjct: 193 -VRVSIPSRAPSLNAAVAASILLY 215


>gi|332284294|ref|YP_004416205.1| RNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330428247|gb|AEC19581.1| RNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 264

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 104/260 (40%), Gaps = 20/260 (7%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIFQL--LAT 74
           Y +L R  R  ++  +  + ++H      + L G+H   A L     P   +F L  L T
Sbjct: 12  YKQLMRLARGKREKNADGRPAQH------VLLEGIHLCQAWLQHMGEPELALFDLQRLET 65

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           +  L  L   AN        +  P+    +   E       L  AP  +P L A R +  
Sbjct: 66  QTELQSL---ANALPAGLCHSCEPRLAAGLSQVEHGQGVYFLVMAP--APVLPA-RITHN 119

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + LD + DP N+G +LR+A A        +   + + SA + +SA GA  H   + I  
Sbjct: 120 CLWLDRLQDPGNVGTLLRTAAAAGIQHAYLSTGCASAWSAKVLRSAQGA--HF-VMTIHE 176

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             D            I  + D  +PL       + A + G EG+G+ P     A     +
Sbjct: 177 HVDLAALRGCLAVPLIATALDDAQPLYDASLPAQCAWVFGNEGQGVDPVLLAQADMRVFI 236

Query: 255 HMPGIIKALNVSNAAAVALY 274
                +++LNV+ AA V L+
Sbjct: 237 PQAADVESLNVAVAAGVCLF 256


>gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 230

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHNI A++R+A A     +     +  S    L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVHAI--WPTSRMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
                 + DA+  + + G Q +  +        +EI   +   ++LG E  G+  +  + 
Sbjct: 73  VKTHRTIQDAVGHLKNEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164


>gi|325067170|ref|ZP_08125843.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
          Length = 310

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 19/248 (7%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVK 94
           N +++H        + G   V  A+ +   ++  +  T+ AL R    WD  +     V 
Sbjct: 59  NARAKH----RRFLVEGPQGVREAVRHAPGRVLDVYLTEAALERHSEIWDEAVAAGLYVH 114

Query: 95  TVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
               Q +D +       QGL    A E A        A+  ++L+ VL    DP N G I
Sbjct: 115 VTTQQVMDAMSPDA---QGLLAVVATEEATGSEALAAALEGARLVAVLTQAQDPGNAGTI 171

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A   D I+  +      +  + +S +G+L H+P +    L DA+  +H+ G    
Sbjct: 172 IRAADAAGADAIVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVTALHNAGLTV- 230

Query: 211 GLSSDSKKPLE----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            L++D +   +    + +     A +LG E  GL  +    A ++  + + G  ++LNV+
Sbjct: 231 -LAADGRGDFDLLEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYGKAESLNVA 289

Query: 267 NAAAVALY 274
            AAAV LY
Sbjct: 290 AAAAVCLY 297


>gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862]
          Length = 256

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 30/258 (11%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + ++K+Q+  +K R  S+     L G H V  A+ +   K+  ++AT   LA       L
Sbjct: 13  KSWQKLQT--KKGRQASK--TYLLDGWHLVQEAIQHEG-KLHAIMATPEQLAEHQEALPL 67

Query: 88  PHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-----MVLDHV 141
             P F + T   + +  +V  + V   ++L TA          R  + +     + LD +
Sbjct: 68  GVPVFEITTDIAKKLSDLVTPQGVFAEVSLPTA---------TREPRFIHDGAWLFLDAI 118

Query: 142 NDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            DP NIG ++R+A A    G++    +   YSP       ++  G+  H+  +   +L D
Sbjct: 119 QDPGNIGTMVRTADAAGFAGVVFGNGSVDPYSPKA----LRAMQGSQFHMT-LTTGDLQD 173

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
                        G   D +      I    + ALI+G EG+G+     +  T   ++ +
Sbjct: 174 WTAAFTQNDINVYGTQLDPEAADLFTIPAQSQFALIMGNEGQGMAADLAKMTTKNLYIPL 233

Query: 257 PGIIKALNVSNAAAVALY 274
            G  ++LNV+ AA +A++
Sbjct: 234 TGDAESLNVAVAAGIAMF 251


>gi|332532739|ref|ZP_08408613.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037766|gb|EGI74216.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 228

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+  HN+ AI+RSA A  C  +       P +   L  + SG  ++   
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAV---WPEKQKWLTNNTSGGSKNWLE 72

Query: 190 IRI-SNLTDALQKMHSWG--FQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +  N+ DA+  M       Q +   LS D+    E +      A+I+G E  G+  K 
Sbjct: 73  THLHRNIDDAVTAMRERNPEIQILATHLSEDAVDFREVDYTK-PTAIIVGQEKTGISEKA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            E A     + M G++++LNVS AAA+ L+  Q
Sbjct: 132 LEYADQNIIIPMQGMVQSLNVSVAAALILFEAQ 164


>gi|300704216|ref|YP_003745819.1| tRNA/rRNA methyltransferase, spou like [Ralstonia solanacearum
           CFBP2957]
 gi|299071880|emb|CBJ43209.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum CFBP2957]
          Length = 263

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +    
Sbjct: 115 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCT 174

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                 ++H      +  SS ++  +        +  + G EG G+  +     T ++ +
Sbjct: 175 FESMHARLH---VPLLATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLSVTTPIS-I 230

Query: 255 HMPGIIKALNVSNAAAVALY 274
             PG +++LNV+ AAA+ L+
Sbjct: 231 PQPGGMESLNVAAAAAICLF 250


>gi|297571531|ref|YP_003697305.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931878|gb|ADH92686.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 298

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 4/168 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQTIDK 103
           Q E   + G   V  AL    R I  +  T+ AL R  D DA L    P   + P  +  
Sbjct: 27  QYEQAIVEGPQGVREALLCYERGIRDVYVTQEALERHPDIDALLRRVDPYTHILPNELCS 86

Query: 104 IVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            V   +  QG+ A+   P      D   + +L++      DP N+G I+R A A   D +
Sbjct: 87  SVAPNS--QGIFAVIAIPDEEDIRDIFAHGKLVVCALESVDPGNVGTIIRCADACGADAV 144

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           I  +    + +  + +S++G+  HIP +   ++ D +      GFQ +
Sbjct: 145 ILGRGSVEATNPKVMRSSAGSYFHIPILEDEDVADVVAHAREAGFQIL 192


>gi|31544702|ref|NP_853280.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541548|gb|AAP56848.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930766|gb|ADC30705.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(high)]
 gi|284931329|gb|ADC31267.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           F]
          Length = 279

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 10/156 (6%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSA 180
           PT D + +    + LDH+ DP N+G ILR+A AF    ++   +   Y+P     L +++
Sbjct: 115 PTFD-LSDQHNYLFLDHIQDPSNLGTILRNAAAFDLTKVLIHDSVNLYNPK----LIRAS 169

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
           +GA+       I NL   L  +   G + +  ++ +   PL+Q        +I G E  G
Sbjct: 170 AGAIFSNQISLIKNLDQFLNAIKKKGLRLVATANHEDATPLDQFDHQLGNIIIFGNEANG 229

Query: 240 LRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALY 274
           +  +    A     + +     ++LNV+ ++ + LY
Sbjct: 230 VSEQLLNQADQTIKIVINNQYAESLNVATSSGIILY 265


>gi|71280430|ref|YP_267533.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71146170|gb|AAZ26643.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H]
          Length = 180

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 4/151 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V + +NIGA +R A AF+ + +I     + S+   + K++    + +      
Sbjct: 30  LIVVLDNVTNSYNIGAFIRLADAFAIEKVIVCGALTISDKK-MKKASRNEAKWVCVEYSD 88

Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + T +LQ +   G    ++ L  +S     +     K  L+LG E KG+     + +   
Sbjct: 89  STTASLQTLLDEGHAIYSVELCHESVD-YTKVTYPAKCVLVLGNERKGVSEAALKLSLQQ 147

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            H+ M G+  +LNVS A A+ L    N   K
Sbjct: 148 IHIPMFGMGNSLNVSTAGAIVLAECANQIRK 178


>gi|83749783|ref|ZP_00946757.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|207743229|ref|YP_002259621.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|83723540|gb|EAP70744.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|206594626|emb|CAQ61553.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 259

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +    
Sbjct: 115 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCT 174

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                 ++H      +  SS ++  +        +  + G EG G+  +     T ++ +
Sbjct: 175 FESMHARLH---VPLLATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLSVTTPIS-I 230

Query: 255 HMPGIIKALNVSNAAAVALY 274
             PG +++LNV+ AAA+ L+
Sbjct: 231 PQPGGMESLNVAAAAAICLF 250


>gi|293393635|ref|ZP_06637945.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
 gi|291423970|gb|EFE97189.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
          Length = 220

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +     +  +    L  SA+G+   +
Sbjct: 3   ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVHAV--WPTTRMRTLVSSAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + +A+  + S G Q +  +  ++    ++I   +   ++LG E  G+  +  +
Sbjct: 61  NVKTHRTIGEAVGHLKSQGMQILATNLSARAVDFRDIDYTRPTCILLGQEKSGISEEALQ 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153


>gi|29348574|ref|NP_812077.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|298386955|ref|ZP_06996509.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
 gi|29340479|gb|AAO78271.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|298260105|gb|EFI02975.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
          Length = 175

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD +   HNIG++ R++ AF  + I      +      + K+A GA   + +  ++
Sbjct: 25  LVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATS 250
           N  DA+  +   G+    +       +   ++ DK    A+++G E KG++ +  + +  
Sbjct: 85  NAVDAVDNLRKEGYIVYSIEQAEGSIMLDRLELDKTKKYAIVMGNEVKGVQQEVIDHSDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + ++
Sbjct: 145 CIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|307260664|ref|ZP_07542356.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869741|gb|EFN01526.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 346

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 7/180 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANL-PHPFPVKTVPPQTI 101
           ++ E + +YG +   A        I +L AT     +L D  + L  H      V    +
Sbjct: 104 NRAEEMKVYGENACLALFKQRPDAIVRLWATIEGAKKLGDMLSYLAEHKKAYHVVDRAEM 163

Query: 102 DKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +++ G E  H  + L   +  P  L   L   R    L++LD VN+  N+G I+R+   +
Sbjct: 164 ERVTGTEQHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCAFY 223

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I     + + SA  A+ A G LE +  +   +   AL ++ + G+Q + L+ + +
Sbjct: 224 GVSRVIVESADTLNSSAA-ARVAEGGLEFVRPLETKHKQIALTQLRNAGYQVVHLTRNKQ 282


>gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 255

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V DP NIG ++R+A A    G++  +  +      + ++  G+  H+      NL
Sbjct: 113 LFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAMQGSQFHLKLCS-GNL 171

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            +  ++         G   +D  +  +Q  ++   AL++G EG G+  K  +  +   ++
Sbjct: 172 IEWAKEFKQRKLPVFGSELNDQARSYDQVGRHSDFALVMGNEGNGMSEKLLKETSLNLYI 231

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LNV+ AA + ++
Sbjct: 232 PIKGHAESLNVAVAAGILMF 251


>gi|205354655|ref|YP_002228456.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274436|emb|CAR39468.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326629793|gb|EGE36136.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 229

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPSSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|126698277|ref|YP_001087174.1| putative RNA methylase [Clostridium difficile 630]
 gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile]
          Length = 226

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  + +++LD + DP N+G I+R+A +   D II  K      +  + +S  G++  +  
Sbjct: 76  KKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNI 135

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  S   + +  + S  F  +    +++   ++     K+AL++G E  G+  +    + 
Sbjct: 136 IDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSD 194

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + + G  ++LN + ++A+ +Y
Sbjct: 195 ILVKIPIYGKAESLNAAISSAILMY 219


>gi|71282637|ref|YP_271614.1| tRNA guanosine-2'-O-methyltransferase [Colwellia psychrerythraea
           34H]
 gi|71148377|gb|AAZ28850.1| tRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea
           34H]
          Length = 235

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 9/156 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186
           R   L + ++ ++  HN+ A++R+     CD I  +     +   E+ V   SA+G+   
Sbjct: 16  RQPDLTVCMEGLHKSHNLAAVVRT-----CDAIGISDVHAVWKSEEAEVRGGSAAGSQNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I         DA+  + + G Q +  + SD+     +       A+ILG E  G   +  
Sbjct: 71  IDVHNYHKTADAIAALKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQEKFGTSEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           E A     + M G++++LNVS A +V LY  Q   A
Sbjct: 131 ELADQHIVIPMVGMVQSLNVSVACSVVLYEAQRQRA 166


>gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26]
 gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932]
 gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55]
 gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34]
 gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79]
 gi|260682395|ref|YP_003213680.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260685994|ref|YP_003217127.1| putative RNA methylase [Clostridium difficile R20291]
 gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291]
          Length = 265

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  + +++LD + DP N+G I+R+A +   D II  K      +  + +S  G++  +  
Sbjct: 115 KKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNI 174

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  S   + +  + S  F  +    +++   ++     K+AL++G E  G+  +    + 
Sbjct: 175 IDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSD 233

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + + G  ++LN + ++A+ +Y
Sbjct: 234 ILVKIPIYGKAESLNAAISSAILMY 258


>gi|93005359|ref|YP_579796.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393037|gb|ABE74312.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 264

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 22/254 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--------TKNALARLD 82
           K +++   ++R  ++     + G+H + AAL +    +  LLA         +  L RL 
Sbjct: 18  KLVKALLTQARQRNKHGQTVIEGIHLIDAALRSDYPFVQILLAESAHHHPEVQQVLTRL- 76

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                P   P+ T+     + I         +A+   P  +P+L  + +  L  +L+ V 
Sbjct: 77  -----PTYTPILTLSDALYESIRSLGTGIDIMAVIKMP--TPSLSMIHDDCL--ILNDVQ 127

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G +LR+A A     I+ T   + + S    ++  GA   +      ++ + L  +
Sbjct: 128 DSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALNIYEGLSVQEVLDHV 187

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +  F T   SS +   + Q      IA I+G EG+G+  +  + AT +A L  P   ++
Sbjct: 188 QTPLFAT---SSHTDTVIYQHDLKKPIAWIMGHEGQGVCNELMQCATPIA-LPQPNGQES 243

Query: 263 LNVSNAAAVALYIT 276
           LNV+ A ++ LY T
Sbjct: 244 LNVAIAGSLCLYET 257


>gi|323449932|gb|EGB05816.1| hypothetical protein AURANDRAFT_72107 [Aureococcus anophagefferens]
          Length = 1088

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 17/157 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++ +  N+  N+GA+ R+  AF    ++   R +        + + G    IP+ R  +
Sbjct: 145 VVLCERTNNLDNVGAVFRNGAAFGAGAVVFDGRSADPYYRKSIRVSGGHALAIPFTRRGS 204

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK--------------PLEQEIKNDK---IALILGAEG 237
           + D +Q   + G     L +                  P+ +   +D+   +A+++GAEG
Sbjct: 205 IADVVQAAKASGHVVCALVTPPTSARSTAVDDAVGAPVPINEWRADDRPERVAVLMGAEG 264

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL  + Q  A     + M   + ++NV+ A ++AL+
Sbjct: 265 PGLTDEAQRLADVRLTIPMANAVDSVNVATACSIALH 301


>gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
 gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
          Length = 176

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD++   HNIG++ R++ AF  + I      +      + K+A GA   + +  ++
Sbjct: 26  LTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGAEFTVDWKYVN 85

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           N  +A+  + + G+    +       +  E+   K+ K  +++G E KG++ +  + +  
Sbjct: 86  NTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYTIVMGNEVKGVQQEVIDHSHG 145

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 146 CIEIPQYGTKHSLNVSVTAGIVIW 169


>gi|16762567|ref|NP_458184.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144056|ref|NP_807398.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052646|ref|ZP_03345524.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213417916|ref|ZP_03351009.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425217|ref|ZP_03357967.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580806|ref|ZP_03362632.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647939|ref|ZP_03377992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289826480|ref|ZP_06545592.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25331661|pir||AF0969 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504872|emb|CAD03250.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139692|gb|AAO71258.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 229

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|325519163|gb|EGC98634.1| tRNA/rRNA methyltransferase [Burkholderia sp. TJI49]
          Length = 260

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 106/258 (41%), Gaps = 21/258 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    + H  +     L G H  SA L+  +      +AT+ ALA  +  
Sbjct: 7   RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPEL-CVATEGALAHAEAQ 65

Query: 85  ANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           A +      + V  P  +   +       G  L       P  +  R +Q  +VLD V D
Sbjct: 66  AIVARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPAQPLPE--RVTQSSVVLDGVQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-------LEHIPYIRISNLT 196
             N+G+ILRSA A     +      + + S+ + +S  GA        +  P    + L 
Sbjct: 124 AGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVAPDALAARLD 183

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             +    S G Q I    D   P         +A + G EG G+    ++ A     +  
Sbjct: 184 VPVALTDSHGAQAI-YDCDLSGP---------VAWVFGNEGAGVSAFWRDAAAHRVTIPQ 233

Query: 257 PGIIKALNVSNAAAVALY 274
           PG +++LNV+ AAAV L+
Sbjct: 234 PGGMESLNVAAAAAVCLF 251


>gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
 gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
          Length = 287

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 13/166 (7%)

Query: 122 LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           L+P LDAV  +  +  + LD V DP N+G I+R+A A    G+I         S    ++
Sbjct: 120 LTP-LDAVAPKPDETWIALDRVRDPGNLGTIIRTADAAGASGVILIGDTVDPFSTETVRA 178

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEI---KNDKIALILG 234
             G++  +P +R S       +  +W  +T  L   S  K  ++      K   + L++G
Sbjct: 179 TMGSIFAMPLLRASE-----AEFLTWSKKTAPLVVGSHLKGSVDYRTIAYKGRPVVLLMG 233

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  GL     ++   +A +   G   +LN++ A  V L+  + H 
Sbjct: 234 NEQAGLPDTLAQSCGKLARIPQTGRADSLNLAIATGVMLFEARRHL 279


>gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
 gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
          Length = 191

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 17/158 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VLD V   +N+G++ RSA AF  + I      +   +A + K+A G  + + +   +
Sbjct: 25  LTVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGGEDSVAWRYFA 84

Query: 194 NLTDALQKMHSWGF------QTIG----------LSSDSKKPLEQEIKNDK-IALILGAE 236
           +  +A++++H  G       Q  G          L + S++  E     D+  ALILG E
Sbjct: 85  HTEEAVEELHRRGVFVYSVEQVEGSTKLQDLTPRLPAVSREEGENSPAGDRHYALILGNE 144

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            KG++    + +     +   G   +LNVS  A + ++
Sbjct: 145 VKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIW 182


>gi|111017974|ref|YP_700946.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110817504|gb|ABG92788.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 269

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++LL V   V +P N G ++R A A   D  I         +    ++++G+L H+P +
Sbjct: 111 GTRLLAVPVAVAEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRASAGSLFHLPVV 170

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETA 248
           R  +    L  + + G Q +  ++D +  L+   E+     A + G E  GL   T   A
Sbjct: 171 RERDTAAVLDSISAAGIQLLATAADGEVDLDDADELLARPTAWLFGNEAHGLDAATSARA 230

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + + G  ++LN++ AA++ LY
Sbjct: 231 DHRVRIPIHGRAESLNLATAASICLY 256


>gi|254707158|ref|ZP_05168986.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|254709299|ref|ZP_05171110.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|256030822|ref|ZP_05444436.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|261314635|ref|ZP_05953832.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261316808|ref|ZP_05956005.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|265987878|ref|ZP_06100435.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|261296031|gb|EEX99527.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261303661|gb|EEY07158.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|264660075|gb|EEZ30336.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
          Length = 176

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 19  KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 78

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + LI+G E +GL    
Sbjct: 79  YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 133

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 134 AGACDKLARIPQAGRADSLNLAIATGVMLY 163


>gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 229

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  + S G Q +      K    +EI   +   +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKSRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|325000927|ref|ZP_08122039.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
          Length = 269

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 7/239 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y+ + + +++         +   GV  V   L++P   +  LL     LA L  D +   
Sbjct: 18  YRDLTTADRRPDRPGGRGLVIAEGVVVVRRLLDSPY-PVRSLLGVPRRLAELADDLHGTD 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
             P  +    T+ + VG       LA+ + AP   P  + +  ++ + V + V D  N+G
Sbjct: 77  -VPAFSTDADTMAQAVGFHLNRGVLAVADRAPAPDPA-ELLAGARTVAVCEGVGDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGF 207
           ++ R+A A   DGI+     S        + + G +  +P+ R+     A L  +   GF
Sbjct: 135 SLFRNAAALGVDGILLGPGCSDPLYRRSVRVSMGHVLRVPFTRLDGEWPASLDVLREAGF 194

Query: 208 QTIGLSSDSK-KPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               L+ D+  +PL    +   ++A +LGAEG GL  +    A     + M   + +LN
Sbjct: 195 TVAALTPDAGAEPLATAGLAGGRVAWLLGAEGPGLTDEALTAADRRVRIPMATGVDSLN 253


>gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 269

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 106/264 (40%), Gaps = 38/264 (14%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--------------PSRKIFQLLATKN 76
           K +     KSR   +  N  L G+     AL                P  KI +L AT  
Sbjct: 16  KNVLVLKDKSRERKKTGNFILEGIREFELALKGFYTIETVFYAEGLFPESKIEELTAT-- 73

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNSQL 134
                     L +   + +V  +   KI  +E     LA+  A   +LS  L     + L
Sbjct: 74  ----------LAYQPVLISVSKEVYQKIAYRETTEGILAIAKAKTHILSE-LKFKNKNPL 122

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYI 190
           ++V +    P NIGA+LR+A A + D +I     T  Y+P+    + +S+ G +   P I
Sbjct: 123 VLVAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPN----IIRSSVGCVFTNP-I 177

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              N T+ +  +          +  + K           A+++G E  GL  +  E AT 
Sbjct: 178 ATGNTTEIIAFLKENNINIFCAALTASKVYTNTSFKTPSAIVVGTEATGLSEEWLENATQ 237

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G I ++NVS +AA+ ++
Sbjct: 238 NIIIPMEGEIDSMNVSVSAAILIF 261


>gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
 gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
          Length = 297

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G I+R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + L++G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
 gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
          Length = 231

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V  PHN+ AI+R+A A     +     +  +    L  SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVLKPHNVSAIIRTADAVGVHQVHAV--WPTTRMRTLVSSAAGSNNWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  ++D +  + + G Q +     S+    +E+   +   ++LG E  G+  +   
Sbjct: 72  NVKTHHTISDTVNHLKTQGMQVLATHLSSRAVDFREVDYTRPTCVLLGQEKTGMTDEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G++++LNVS A+A+ LY  Q
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQ 162


>gi|118589655|ref|ZP_01547060.1| rRNA methylase [Stappia aggregata IAM 12614]
 gi|118437741|gb|EAV44377.1| rRNA methylase [Stappia aggregata IAM 12614]
          Length = 275

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 12/166 (7%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           LL P       + L + LD V DP N+G I+R+  A    G++     +   +    ++ 
Sbjct: 114 LLGPRDIEPSGTTLWVALDRVRDPGNLGTIIRTVDAVGGAGVMLVGDCTDPFAVEAVRAT 173

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGA 235
            G+L H+P  ++    D  + + +    T+       S D + P   E     + L++G 
Sbjct: 174 MGSLFHVPLAKLGK--DEFKSLAATWPGTVAATHLKGSVDYRTPDYAE----PVLLVMGN 227

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
           E KGL         ++  +   G   +LN++ A  VALY I + H 
Sbjct: 228 EQKGLEDDMAAACPTLIRIPQVGQADSLNLAVATGVALYEIRRKHL 273


>gi|218680736|ref|ZP_03528633.1| rRNA methylase protein [Rhizobium etli CIAT 894]
          Length = 189

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+ +  + LD V DP N+G I+R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 32  RDGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 91

Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            R +      ++  +W  ++ G+S      + +      + +   + L++G E  GL  +
Sbjct: 92  ARATP-----EEFIAW-RKSAGVSIVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPDQ 145

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 146 LAREADALARIPQQGRADSLNLAVATAVMLFEARRHL 182


>gi|89898599|ref|YP_515709.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89331971|dbj|BAE81564.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 265

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
             ++++ V  P N+GA+LR A     DG++        Y+P+    + +S+ G +  +P 
Sbjct: 117 FYLIIEQVEKPGNVGALLRIADGVGADGVVLCDPIVDLYNPN----VIRSSLGTVFTLP- 171

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  + L + LQ +    +Q    +  +      E  N  +AL+ G+E  GL         
Sbjct: 172 IWSATLEEVLQTLSEEKWQVFVTTPRASSLYFCENYNQPLALVFGSEKDGLTSSWLNGDF 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           S   L M G   +LN+S A +   Y
Sbjct: 232 SKISLPMLGQADSLNLSTAVSAVAY 256


>gi|161505720|ref|YP_001572832.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867067|gb|ABX23690.1| hypothetical protein SARI_03896 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 218

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 3   ARRQPDLTICMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 61  QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153


>gi|240143678|ref|ZP_04742279.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
 gi|257204355|gb|EEV02640.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
          Length = 281

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           L++L+ + DP N+G ++R+       G+I    T   ++P       +S  G++  +P+ 
Sbjct: 134 LLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPK----TIRSTMGSIYRVPFF 189

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +L   +  +                  ++     K A ++G EG GL  +  + A +
Sbjct: 190 ITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGLSDEIADLADT 249

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M G +++LN + +A++ +Y T
Sbjct: 250 YIKIPMQGQVESLNAAISASLLMYET 275


>gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 224

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 9/150 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVA---FSCDGIITTKRYSPSESAVLAKSASGALE 185
            R   L ++++ VN PHN+ AILR+  A   F  + I   KR    E      +A G+ +
Sbjct: 17  CRMENLTVLVEAVNKPHNLSAILRTCDAAGVFEANFI--CKR---DEVKTFNSTAQGSQK 71

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +          A+  +   GF+  G + +DS          +    +LGAE  GL  + 
Sbjct: 72  WVKLNNHETTISAVSHLKKKGFKLYGTTLNDSSTDYRNFDYAENTCFVLGAEKWGLSDEL 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS AA++ L+
Sbjct: 132 ISKVDESIFIPMTGMVQSLNVSVAASILLF 161


>gi|118468977|ref|YP_888083.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|118170264|gb|ABK71160.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 252

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPYIRI 192
           L+ V   +++P N G ++R A A     ++       P  S  L ++++G++  IP I  
Sbjct: 99  LIAVPVQLSEPGNAGTLIRVADAMGAAAVVLAGNSVDPYNSKCL-RASAGSIFSIPVISD 157

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL-----EQEIKNDKIALILGAEGKGLRPKTQET 247
            +    +Q++   G + +  + D +  L     E E+  +  A + G E  GL       
Sbjct: 158 PDEARVVQRLRDAGLRVLATTVDGEADLDDPDLEAEL-TEPTAWLFGPEAHGLSTDLAAM 216

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + MPG  ++LN+++AA++ LY
Sbjct: 217 AHRRVQIPMPGHAESLNIASAASICLY 243


>gi|315186915|gb|EFU20673.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 249

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186
           R   + +VL+++  PHN  A+LRSA A     +   +    ++PS+   +  +   +L  
Sbjct: 35  RTRYITVVLENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTPSKGVSMGTARWLSLH- 93

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKNDKIALILGAEGKGLRPKT 244
               R  +   A+ ++   G++ I  +   +  P+++ ++   K A   G E  GL    
Sbjct: 94  ----RYQDPRVAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFFGGELPGLSDAV 149

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E A     + M G +++LN+S  A + L+
Sbjct: 150 LEAADEYLTIPMYGFVESLNISVTAGIVLH 179


>gi|158336981|ref|YP_001518156.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158307222|gb|ABW28839.1| RNA methyltransferase, trmH family [Acaryochloris marina MBIC11017]
          Length = 279

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 19/161 (11%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAV 175
           P ++P++       L ++LD V    N G ++R+  A    G I   +    Y+PS    
Sbjct: 116 PSITPSMG------LWVILDRVRSLGNFGTLIRTLDAGGGTGFILLNQAVDPYAPST--- 166

Query: 176 LAKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             +++ G++    +IR  +  L+  LQ+   +    IG S D ++            L L
Sbjct: 167 -VRASMGSVFQQQFIRTHDQALSQWLQQHQGY---VIGASPDGEENFHTFTYPKNTLLFL 222

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G E  GL PK +    ++  + M G + +LNV+ A ++ +Y
Sbjct: 223 GEERTGLSPKQRSLCNTLLKIPMVGQVDSLNVAVAGSLFIY 263


>gi|126644106|ref|XP_001388189.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum
           Iowa II]
 gi|51951322|gb|AAU15130.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum]
 gi|126117262|gb|EAZ51362.1| tRNA/rRNA methyltransferase-like protein, putative [Cryptosporidium
           parvum Iowa II]
          Length = 214

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  +VL +++   N G +LRSA  F    ++        E  ++     G L H+   + 
Sbjct: 15  EFYLVLSNISKRQNFGTLLRSACGFGVSEVLVV-----GEKKLMTFGNKGTLPHLSLTQY 69

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            N+   +  +       +G+  SD  +P+         A +LG EG GL  K  +    +
Sbjct: 70  ENIDQVVDIIKEKEMDLVGIEISDESRPIYPHPFKRSTAFLLGNEGTGLSQKYIKLCDYL 129

Query: 252 AHLHMPGIIKA-LNVSNAAAVALYITQNHFA 281
            H+ + G   A LNV+ A ++  +    HFA
Sbjct: 130 IHIPLYGNGTASLNVAIAGSIVFH----HFA 156


>gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2]
          Length = 243

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALE 185
           A R + L + L++V+ PHN+ A++R+     CD I   + ++  E        +A G+ +
Sbjct: 14  AKRQTDLTVCLENVHKPHNVSAVVRT-----CDAIGIHRVHTVWEEKYQFRGDTAMGSQQ 68

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +      +L +A+  +   G Q +    SD+     +       A+I G E  G   + 
Sbjct: 69  WVRQTNHDSLGNAIGALKQQGMQVLVTHLSDTAVGFREVDYTKPTAIIFGQERYGATDEA 128

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              A     + M G++++LNVS AAA+ LY  Q  
Sbjct: 129 IAMADQDIIIPMAGMVQSLNVSVAAALVLYEAQRQ 163


>gi|169836038|ref|ZP_02869226.1| 23S rRNA methyltransferase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 256

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 112 QGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167
           QG+      L S  L+ + + +  +++LD V DP N G I+R+ +A +   +I TK    
Sbjct: 88  QGIMF----LYSKNLNTIEDVKGDVVILDDVQDPGNAGTIIRTMIAANFQNLILTKGSVD 143

Query: 168 -YSPSESAVLAKSASGALE-HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            Y+P     +  + SG  + +I Y    N+   L   +     T  L  DS    + E++
Sbjct: 144 VYNPK---TVRATMSGIFKLNIIYETPENIVKFLNDKNYLKIAT-ALHEDSISYEKIELR 199

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  A I G EG G+     E +   A + + G I++LNVS A  + LY
Sbjct: 200 ENN-AFIFGHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLY 247


>gi|67596101|ref|XP_666055.1| OBP33pep like protein [Cryptosporidium hominis TU502]
 gi|54656965|gb|EAL35825.1| OBP33pep like protein [Cryptosporidium hominis]
          Length = 213

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 11/151 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  +VL +++   N G +LRSA  F    ++        E  ++     G L H+   + 
Sbjct: 15  EFYLVLSNISKRQNFGTLLRSACGFGVSEVLVV-----GEKKLMTFGNKGTLPHLSLTQY 69

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            N+   +  +       +G+  SD  +P+         A +LG EG GL  K  +    +
Sbjct: 70  ENIDQVVDIIKEKEMDLVGIEISDESRPIYPHPFKRSTAFLLGNEGTGLSQKYIKLCDYL 129

Query: 252 AHLHMPGIIKA-LNVSNAAAVALYITQNHFA 281
            H+ + G   A LNV+ A ++  +    HFA
Sbjct: 130 IHIPLYGNGTASLNVAIAGSIVFH----HFA 156


>gi|256380914|ref|YP_003104574.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255925217|gb|ACU40728.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 235

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++LD+  +  N GA++R A      G+++T    P    VL  SA G    +P  R+ +
Sbjct: 94  LVLLDNPRNLGNFGAVVRVAAGLGASGVVSTGDVDPWHPTVLRGSA-GLHYALPVARVDD 152

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              A  +   + F   G      +P+++    D   L  G+E  GL  +T+  A  +  L
Sbjct: 153 --PAALEGELFAFDADG------EPVDRVRFPDGAVLAFGSERHGLSERTRARADRVVSL 204

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M  ++ + N++ + A+ALY
Sbjct: 205 PMRPLVSSYNLTTSVAMALY 224


>gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 230

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHN+ A++R+A A     +     +  S    L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNVSAVIRTADAVGVHQVHAI--WPTSRMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
                 + DA+  + + G Q +  +        +EI   +   ++LG E  G+  +  + 
Sbjct: 73  VKTHRTIRDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITDEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQ 164


>gi|255066800|ref|ZP_05318655.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
 gi|255048875|gb|EET44339.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
          Length = 263

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 11/144 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA---LEHIPYIRI 192
           +VLD + DP N+G +LRSA A     I+         S  + ++  GA   L+    + +
Sbjct: 118 VVLDRLQDPGNVGTVLRSAAASGIRQIVLGNDCVDIWSPKVLRAGMGAHFLLDIYSRVFL 177

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            +  DA Q       +    + D + P  L Q   N   A + G EG G+  +  E    
Sbjct: 178 PHWLDAYQD------KIWATALDGRNPSDLYQLDLNAPCAWVFGNEGSGVSREILEKVDG 231

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G  ++LNV+ AA V L+
Sbjct: 232 SVRIPMLGQTESLNVAMAATVCLF 255


>gi|62182237|ref|YP_218654.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167549007|ref|ZP_02342766.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233268|ref|ZP_02658326.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235358|ref|ZP_02660416.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241923|ref|ZP_02666855.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260501|ref|ZP_02682474.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168818425|ref|ZP_02830425.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444680|ref|YP_002042992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448230|ref|YP_002047774.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469893|ref|ZP_03075877.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735347|ref|YP_002116686.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|200387615|ref|ZP_03214227.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207858980|ref|YP_002245631.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585541|ref|YP_002639340.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910216|ref|ZP_04654053.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62129870|gb|AAX67573.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194403343|gb|ACF63565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406534|gb|ACF66753.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456257|gb|EDX45096.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710849|gb|ACF90070.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291598|gb|EDY30950.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604713|gb|EDZ03258.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205325898|gb|EDZ13737.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332504|gb|EDZ19268.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339031|gb|EDZ25795.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344462|gb|EDZ31226.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350250|gb|EDZ36881.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710783|emb|CAR35144.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470069|gb|ACN47899.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320088164|emb|CBY97926.1| putative RNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322716725|gb|EFZ08296.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|312875558|ref|ZP_07735559.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2053A-b]
 gi|311088812|gb|EFQ47255.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2053A-b]
          Length = 253

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG+I + +     ++ + +S  G+  H+  ++ +++
Sbjct: 112 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDI 170

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
              L    + G        D    +    K   ++ LI+G E  G+  + Q       ++
Sbjct: 171 EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 230

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LN + AA + +Y
Sbjct: 231 PIKGKAESLNAAVAAGIMIY 250


>gi|126662021|ref|ZP_01733020.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
 gi|126625400|gb|EAZ96089.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
          Length = 264

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 23/152 (15%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--------- 184
           L+++ + +  P N+GAILR+A A + D +I     S   +  + +S+ G L         
Sbjct: 116 LILIGESLEKPGNVGAILRTADAANIDAVIIANPKSDLYNPNIVRSSVGCLFTRQIAVGT 175

Query: 185 --EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             E I Y++ +N++     ++S   Q      DS +   Q       AL++G E  GL  
Sbjct: 176 TEEVIAYLKANNIS-----IYSATLQ------DSTEYHTQNYTTPT-ALVVGTEATGLSE 223

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K +  +T    + M G I ++NVS AAA+ L+
Sbjct: 224 KWRIESTKNIIIPMQGEIDSMNVSVAAAILLF 255


>gi|113954546|ref|YP_729963.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CC9311]
 gi|113881897|gb|ABI46855.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CC9311]
          Length = 290

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V     ++ LD + DP N+G +LR+A A     +       P    V+ +S++GA+  +P
Sbjct: 117 VEAPDFVLALDRIQDPGNLGTLLRTARAADIQQVWCASGADPLAPKVV-RSSAGAILSLP 175

Query: 189 YIR--------ISNLTDALQKMHSWGFQTIG-LSSD-----SKKPLEQEIKNDKIALILG 234
             R        +  L + L +    G Q +  L  D     S +P  +        L+LG
Sbjct: 176 VERFGPDPMEGVVQLAERLNQAREAGLQIVATLVPDAAANLSVQPYWELDWTLPTVLLLG 235

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            EG GL P  Q   ++   L     +++LNV+ AAAV L + +  
Sbjct: 236 NEGAGLDPLLQACCSAGVTLPHSSAVESLNVA-AAAVPLLLERRR 279


>gi|312891695|ref|ZP_07751205.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
 gi|311295879|gb|EFQ73038.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
          Length = 177

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 3/142 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD+V   HN+G+I R++ AF+ + I          +  + K+A GA + + +    + 
Sbjct: 27  VVLDNVRSLHNVGSIFRTSDAFAVEQICLCGITGLPPNREIEKTALGATQSVNWKHYPST 86

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMA 252
            DA+ ++   G+  I +       +  +   I  +K ALI G E  G+  +  E      
Sbjct: 87  LDAIHQLRVDGYLIIAIEQAVDSTMLNQFEPIPGEKYALIFGNEVNGVADEVMEQIDGCI 146

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            +   G   + N+  +A + L+
Sbjct: 147 EIPQFGTKHSFNIVVSAGIILW 168


>gi|127514429|ref|YP_001095626.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
 gi|126639724|gb|ABO25367.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
          Length = 234

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 5/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188
           R + L + LD V+  +NI A++R+A A    GI       P  E  V   +ASG+ + + 
Sbjct: 16  RQTDLTVCLDKVHKTNNIAAVIRTADAV---GIHQIHAVWPDIEMRVSGNTASGSQQWVK 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
            I+  ++ +A  +  + G Q +  +        ++I   K   +I+G E  G+  +    
Sbjct: 73  TIKHYHMDEAAAQFKAAGMQILATNFSENAVDFRDIDYTKPTVVIMGNERDGVSEEGLAI 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G++++LNVS A+A+ +Y  Q   A+
Sbjct: 133 ADQQIIIPMIGMVQSLNVSVASALVMYEAQRQRAE 167


>gi|213052274|ref|ZP_03345152.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 127

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 18/129 (13%)

Query: 50  FLYGVHTVSAALNN-PSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L   P R  ++F L   ++   RL     L H    + V  Q  ++   
Sbjct: 4   MIYGIHAVQALLERAPERFQEVFILKGREDK--RL---LPLIHALESQGVVIQLANRQYL 58

Query: 107 KE----AVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E    AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A
Sbjct: 59  DEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITT 165
                +I T
Sbjct: 119 AGVHAVIVT 127


>gi|118594703|ref|ZP_01552050.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440481|gb|EAV47108.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 263

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 4/139 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + DP N+GAILR+  A     +  +K      S  + + + G    +   +  +L
Sbjct: 117 LLLDDIQDPGNLGAILRTHAAAGNKFVFLSKGCCDLWSPKVIRGSQGTQFSLICYQQEDL 176

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              + ++    F    L    +  L ++  +  IA ILG EG+G+     + +  M  + 
Sbjct: 177 ALLIDRLE---FSVFSLGMQGESVLNRKF-DQNIAFILGNEGRGISSTLLKKSDQMLSIP 232

Query: 256 MPGIIKALNVSNAAAVALY 274
           M   +++LNV  AA++ +Y
Sbjct: 233 MIKNVESLNVGVAASIVIY 251


>gi|118088202|ref|XP_419559.2| PREDICTED: similar to TAR RNA loop binding protein [Gallus gallus]
          Length = 1328

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            NS+L++V   ++ P N+G + R++  F    ++    +   +      S S A + +P +
Sbjct: 1169 NSRLIVVASLIDKPTNLGGLCRTSEIFGASALVVGSLHYVQDKQFQHLSVS-AEQWLPLV 1227

Query: 191  RI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  S L D LQ+  + G+  IG+   +K   L +    +K  L+LG E +G+       
Sbjct: 1228 EVKPSQLVDYLQQKKTEGYTAIGVEQTAKSYDLTEYCFPEKSLLLLGNEHEGIPANLIHH 1287

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +   GII++LNV  + A+ ++
Sbjct: 1288 LDVCVEIPQQGIIRSLNVHVSGALLIW 1314


>gi|301787005|ref|XP_002928920.1| PREDICTED: probable methyltransferase TARBP1-like [Ailuropoda
            melanoleuca]
          Length = 1548

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       ++      S S A + +P + 
Sbjct: 1389 SRLIVVASLIDKPTNVGGLCRTCEVFGASALVVGSLQCVTDKQFQGLSVS-AEQWLPLVE 1447

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    ++  L+LG E +G+     +  
Sbjct: 1448 VKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLSQYSFPERSLLLLGNEREGIPANLIQQL 1507

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1508 DVCVEIPQQGIIRSLNVHVSGALLIW 1533


>gi|197266019|ref|ZP_03166093.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197244274|gb|EDY26894.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300074293|gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 263

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + DP N+G+ILRSA A     +  +     + S  + ++  GA  H   + I   
Sbjct: 118 VLLDGLQDPGNLGSILRSAAAAGVRQVFCSPGTVAAWSPKVLRAGMGA--HF-VLDIVED 174

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D +    +     +  SS + + +     +  +A +LG EG+G+    QE AT    + 
Sbjct: 175 ADLVALCAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQEAATQEVVIP 234

Query: 256 MPGIIKALNVSNAAAVALY 274
             G +++LNV+ AAAV L+
Sbjct: 235 HLGQMESLNVAAAAAVCLF 253


>gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 286

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+ +  + LD V DP N+G I+R+A A    GII     +   S    ++  G++  +P 
Sbjct: 129 RDGETWVALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAVPV 188

Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            R      A ++  +W  ++ G+S      + +      + +   + L++G E  GL  +
Sbjct: 189 ARA-----APEEFIAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPDQ 242

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 243 LAGQADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|213609646|ref|ZP_03369472.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 184

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
 gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
          Length = 270

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 3/155 (1%)

Query: 122 LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           L  TLD +   +S + +V + + DP N+G ILR+  A    G+I         S    ++
Sbjct: 105 LGTTLDMLDRSSSGIWLVAERLRDPGNLGTILRTGDAVGAGGLILVGECVDPFSVEAVRA 164

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + GAL  +P ++ +     L  +     Q +GLS D++             L+ G E +G
Sbjct: 165 SMGALFTVPIVK-TEWQPFLDWLRQGPGQLVGLSLDTETDYRSADYTAPTFLLTGNEAQG 223

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +          +  + M G   +LN + A AV  Y
Sbjct: 224 MPADYAAACDVLVKIPMLGKADSLNAAVATAVMAY 258


>gi|309803139|ref|ZP_07697236.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           11V1-d]
 gi|309805268|ref|ZP_07699320.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           09V1-c]
 gi|312871826|ref|ZP_07731914.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           3008A-a]
 gi|312873041|ref|ZP_07733101.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874184|ref|ZP_07734218.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2052A-d]
 gi|315653629|ref|ZP_07906549.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325912046|ref|ZP_08174444.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
 gi|325912663|ref|ZP_08175046.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
 gi|329920097|ref|ZP_08276928.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
 gi|308164647|gb|EFO66897.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           11V1-d]
 gi|308165502|gb|EFO67733.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           09V1-c]
 gi|311090254|gb|EFQ48664.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2052A-d]
 gi|311091563|gb|EFQ49947.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092768|gb|EFQ51124.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           3008A-a]
 gi|315488991|gb|EFU78633.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325475996|gb|EGC79164.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
 gi|325478084|gb|EGC81213.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
 gi|328936551|gb|EGG32995.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
          Length = 255

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG+I + +     ++ + +S  G+  H+  ++ +++
Sbjct: 114 VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDI 172

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
              L    + G        D    +    K   ++ LI+G E  G+  + Q       ++
Sbjct: 173 EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LN + AA + +Y
Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252


>gi|204928623|ref|ZP_03219822.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322056|gb|EDZ07254.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|291326958|ref|ZP_06126486.2| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291312042|gb|EFE52495.1| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 226

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A+R   L + L+ ++ PHN+ AI+RSA A    GI       P +   L+  SA+G+   
Sbjct: 3   AMRQPDLTLCLEEIHKPHNVSAIVRSADAV---GIHQIHAIWPDQQVKLSVSSAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQ 245
           +  I  ++  +A+  + S   Q +  +        +EI       +++G E  G+  +  
Sbjct: 60  VKIISHTSTEEAIAHIKSQNMQVLATNLSEHAVDFREIDYTLPTCIMMGQEKTGISQQAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A     + M G++++LNVS A+A+ LY  Q
Sbjct: 120 ALADKHIIIPMAGMVQSLNVSVASALILYEAQ 151


>gi|327405561|ref|YP_004346399.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327321069|gb|AEA45561.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 225

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R   L ++L+ +   HN  A++RS   F    +   +  S ++  V    A GA   +
Sbjct: 26  SMRTRHLTVLLEEIFQEHNASAVIRSCDCFGIQELHVVE--SKNKYKVQRDIARGAGRWV 83

Query: 188 PYIRISN----LTDALQKMHSWGFQTIGLSSDSKK-----PLEQEIKNDKIALILGAEGK 238
                +     L DA+ K+ S G++   L+ D++      PL+Q      +AL  G E +
Sbjct: 84  DLFNYNEGPTPLLDAVNKLKSKGYKIAALTPDAEHSIFDLPLDQ-----PVALSFGTEWE 138

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G+  + +E A     + M G  ++ NVS + A+ L
Sbjct: 139 GISDEIREIADYKVSIPMVGFTESFNVSVSVALTL 173


>gi|227494667|ref|ZP_03924983.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831849|gb|EEH64232.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 282

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++VL    DP N G ++R A A   D +          S  + +S++G++ H+P I   
Sbjct: 124 FIVVLAQTQDPGNAGTMIRIADAAGADAVFICSGSVDVTSPKVVRSSAGSVFHLPSIVNV 183

Query: 194 NLTDALQKMHSWGFQTIGLSS-------DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            L + L+   + G Q +G          D+   +      +  A I G E  G       
Sbjct: 184 GLPEVLEWARARGMQLLGADGNGSVDLFDAADCMVDVDLAEPTAWIFGNEAHGFAQFDTS 243

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                  + + G  ++LNVS AAAV L+
Sbjct: 244 EIEHFVSIPLGGHAESLNVSAAAAVCLF 271


>gi|226360105|ref|YP_002777883.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226238590|dbj|BAH48938.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 269

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 2/146 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++LL V   V +P N G ++R A A   D  I         +    ++++G+L H+P +
Sbjct: 111 GTRLLAVPVAVAEPGNAGTVIRVADAVGADAAILAGDSVDPHNGKCVRASAGSLFHLPVV 170

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETA 248
           R  +    L  + + G Q +  ++D +  L+   E+     A + G E  GL   T   A
Sbjct: 171 RERDTAAVLDTISAAGIQLLATAADGEVDLDDADELLARPTAWLFGNEAHGLDAATAARA 230

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + + G  ++LN++ AA++ LY
Sbjct: 231 DHRVRIPIHGRAESLNLATAASICLY 256


>gi|295402439|ref|ZP_06812392.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112708|ref|YP_003991024.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
 gi|294975530|gb|EFG51155.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217809|gb|ADP76413.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEH 186
           R   + ++ + V+DPHN  A+LR+A AF    +      +P +   L    +     L  
Sbjct: 45  RTRYVTVLTEAVDDPHNQAAVLRTAEAFGVQDVYVVAGRAPFQPNPLVTRHADKWLTLRQ 104

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            P     ++  A+Q + + G++     L   + +  + ++ +   AL+ G E  G+  + 
Sbjct: 105 QP-----DIVTAIQDLQAKGYRVYASYLGEGTIRLCDIDV-SQPTALLFGNEHSGVSQEA 158

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A +   + M G +++ N+S AAA+ALY
Sbjct: 159 IRVADATFMIPMYGFVQSFNISVAAALALY 188


>gi|281342333|gb|EFB17917.1| hypothetical protein PANDA_018980 [Ailuropoda melanoleuca]
          Length = 1374

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       ++      S S A + +P + 
Sbjct: 1216 SRLIVVASLIDKPTNVGGLCRTCEVFGASALVVGSLQCVTDKQFQGLSVS-AEQWLPLVE 1274

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    ++  L+LG E +G+     +  
Sbjct: 1275 VKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLSQYSFPERSLLLLGNEREGIPANLIQQL 1334

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1335 DVCVEIPQQGIIRSLNVHVSGALLIW 1360


>gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
 gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEH 186
           A+R   L + L+ V+  HN+ A++R+A A    GI       P E   +L   A+G+   
Sbjct: 3   AMRQPDLTICLEEVHKSHNVAAVIRTADAV---GIPKIHAIWPEEKMRMLVSPAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +       +TDA+    + G Q +      K    +EI   +   +I+G E  G+     
Sbjct: 60  VNVETHPTITDAVGAFRTQGMQVLATHLSDKAVDFREIDYTRPTCIIMGQEKTGISQDAI 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 120 ALADQDIIVPMMGMVQSLNVSVASALILYEAQRQ 153


>gi|46191103|ref|ZP_00120535.2| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|189439683|ref|YP_001954764.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|296453794|ref|YP_003660937.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|189428118|gb|ACD98266.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|296183225|gb|ADH00107.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 292

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 13/145 (8%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G ++R+A A  CD +I         +  + +S +G+L H+P + +S  TD  
Sbjct: 138 QVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS--TDEF 195

Query: 200 ------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-----ALILGAEGKGLRPKTQETA 248
                   M  W     G      + L   + +        A++ G E +GL P      
Sbjct: 196 FTWTGDHNMGVWAADVYGTEECKPESLPAVLADKAAVEAPKAVLFGNEARGLEPDILTRC 255

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
             +  + + G  ++LN+  +AAV L
Sbjct: 256 GRIVSIPLYGKAESLNLGTSAAVML 280


>gi|288575697|ref|ZP_06393898.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
 gi|288567117|gb|EFC88677.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
          Length = 260

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD + DP N+G +LRSA A     I+         S  + ++  GA  H+  + I + 
Sbjct: 115 VVLDRLQDPGNVGTVLRSAAASGVRQIVLGNDCVDIWSPKVLRAGMGA--HL-LLNIYSR 171

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               Q + ++  +    + D + P  L Q   N   A + G EG G+  +  E       
Sbjct: 172 VSLPQWLDTYQDKIWATALDGRNPSDLYQLDLNAPCAWVFGNEGSGVSREILEKVDGGVR 231

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G  ++LNV+ AA V L+
Sbjct: 232 IPMLGQTESLNVAMAATVCLF 252


>gi|269120819|ref|YP_003308996.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
 gi|268614697|gb|ACZ09065.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
          Length = 256

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 11/167 (6%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---- 167
           QG+ +  + LL+ +++ +     +++LD V DP NIG I+R+  A     +I TK     
Sbjct: 88  QGVIVLYSKLLT-SIEEIDGD--VVILDDVQDPGNIGTIIRTMEASGFKNLILTKGSVDV 144

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
           Y+P    V A        +I Y     +T+ L+  +     T+ L  +S    + E+K +
Sbjct: 145 YNP--KTVRATMGGIFKSNIIYETPERITEFLKDNNYQVISTL-LDKNSIDYRDVELK-E 200

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K A I G EG G+     E+    A + + G + +LNVS A+ + LY
Sbjct: 201 KNAYIFGNEGHGISDIFIESTDIKAIIPIYGDVDSLNVSVASGIFLY 247


>gi|50085696|ref|YP_047206.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531672|emb|CAG69384.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 266

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 116/274 (42%), Gaps = 36/274 (13%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  L+    AK++ + R   + QSF +K + T       L G H   + L    RKI  L
Sbjct: 11  IIYLESKDNAKIK-HLRGLIEQQSFRKKQKQT------VLEGTHLCLSWLQE-QRKIISL 62

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVR 130
             T+ AL   D++         K +        V  E++++ L+ L T       +D  +
Sbjct: 63  FTTEVALKHADFE---------KIIDIYQGAIFVISESLYRDLSTLGTTLACLAVIDLPQ 113

Query: 131 NSQLL------MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           +SQ +      ++L+++ DP N+G +LRSA A +   ++ TK  +   S  + ++  GA 
Sbjct: 114 SSQAIDFKKDTLILENIQDPGNVGTLLRSAAAANIKQVVCTKGSASLWSPRVLRAGMGA- 172

Query: 185 EHIPYIRISNLT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            H       N+  D +  +  +       SS     L  +        ILG EG+G    
Sbjct: 173 -HFSLYTFENIELDMI--LEQFDIPVFVTSSHHATNLYDQDLTKPCVWILGNEGQG---- 225

Query: 244 TQETATSMAH---LHMPGIIKALNVSNAAAVALY 274
             E A S A    +  PG  ++LNV+ A ++  +
Sbjct: 226 ASEYALSHAQAITIPQPGGQESLNVAIAGSICFF 259


>gi|307564841|ref|ZP_07627369.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
 gi|307346563|gb|EFN91872.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
          Length = 181

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G+I RS  AF    +      +   +A + K+A G  + + +   +
Sbjct: 25  LVVVLDDVRSLYNVGSIFRSGDAFRIKAVYLCGITATPPNAEIHKTALGGEDSVEWKYFT 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKTQETA 248
              DA+  +H  G+    +         Q++      +   A+I+G E KG++    + +
Sbjct: 85  RTEDAIVALHDQGYYVYCVEQVEGSVKLQDLSKILTPHSLYAIIMGNEVKGVKQTVVDLS 144

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +   +   G   +LNVS  A + ++     FAK
Sbjct: 145 DNSIEIPQFGTKHSLNVSTTAGIVIW----EFAK 174


>gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 286

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 57/145 (39%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   L + LD V DP N+G I+R+  A    G+I     +   S    ++  G++  +P 
Sbjct: 127 KGEDLWVALDRVRDPGNLGTIIRTVDAVGARGVILVGECTDPFSVETVRATMGSVFSVPL 186

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R         + H  G         S      +     + L++G E +GL  K  E   
Sbjct: 187 ARADEAAFLAWREHFAGLMVGTHLKGSVDYRNVDYSGGPVLLLMGNEQQGLPDKLAEACD 246

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  +   G   +LN++ A  V LY
Sbjct: 247 RLVRIPQAGRADSLNLAVATGVMLY 271


>gi|170766883|ref|ZP_02901336.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
           TW07627]
 gi|170124321|gb|EDS93252.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
           TW07627]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASTAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +  E
Sbjct: 72  QVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTCPTCILMGQEKTGITKEALE 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G++++LNVS A+A+ LY  Q
Sbjct: 132 LADQDIIIPMVGMVQSLNVSVASALILYEAQ 162


>gi|194334189|ref|YP_002016049.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
           271]
 gi|194312007|gb|ACF46402.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
           271]
          Length = 181

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L ++   +N+G+I R+A A   + +I T   +      + K+A GA E + +   ++ 
Sbjct: 30  IILHNIRSMYNVGSIFRTADAAGIEKVIITGYTATPPRKEIDKTALGAQETMAWEYFAHP 89

Query: 196 TDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            + +  M   G    GL  +++S+   + +  +  + LILG E +G+     E    +  
Sbjct: 90  LEVIPAMKEKGIAICGLEITTNSRAYTDVDRSDFPLCLILGNEVQGIDDDILEQCDHILE 149

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G   +LNVS AA VAL+
Sbjct: 150 IPQFGTKHSLNVSVAAGVALF 170


>gi|257146507|emb|CAX30793.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Glycaspis brimblecombei]
 gi|257146511|emb|CAX30796.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Diaphorina citri]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L++V+ PHNI A++R+A A    GI          S+    +A+    H 
Sbjct: 14  AMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSNHW 70

Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             +R  +++ +A+    + G Q +    ++      Q   N    +ILG E  G+  +  
Sbjct: 71  VKVRTHASIENAISACKAAGIQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A    H+ M G++++LNVS A+A+ LY  Q
Sbjct: 131 ALADHNIHIPMMGMVQSLNVSVASALILYEAQ 162


>gi|224047842|ref|XP_002191709.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Taeniopygia guttata]
          Length = 1325

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            NS+L++V   ++ P N+G + R++  F    ++    +   +      S S A + +P +
Sbjct: 1167 NSRLIVVASLIDKPTNLGGLCRTSEIFGASALVVGSLHYIQDKQFQHLSVS-AEQWLPLV 1225

Query: 191  RI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  S L D LQ+  + G+  IG+   +K   L +    +K  L+LG E +G+       
Sbjct: 1226 EVKPSQLVDYLQQKKTEGYTIIGVEQTAKSFDLTEYCFPEKSLLLLGNEHEGIPANLIHH 1285

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +   GII++LNV  + A+ ++
Sbjct: 1286 LDVCVEIPQQGIIRSLNVHVSGALLIW 1312


>gi|257126058|ref|YP_003164172.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
 gi|257049997|gb|ACV39181.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
          Length = 256

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 112 QGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167
           QG+      L S  L+ + + Q  +++LD + DP N G I+R+ +A +   +I TK    
Sbjct: 88  QGIIF----LYSKNLNTIEDIQGDVVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVD 143

Query: 168 -YSPSESAVLAKSASGALE-HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            Y+P     +  + SG  + +I Y     + + L   +     T  L  DS    + E++
Sbjct: 144 VYNPK---TVRATMSGIFKLNIIYETPEKIVEFLNNKNYLKIAT-ALHEDSISYEKIELR 199

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  A I G EG G+     E +   A + + G I++LNVS A  + LY
Sbjct: 200 ENN-AFIFGHEGGGVSEYLIENSDIKAIIPIYGNIESLNVSVATGIFLY 247


>gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 250

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 10/154 (6%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-LAKSASGALEH 186
           + R   L + L+ V+ PHN+ AILRS     CD +   + +   +    L K  +   EH
Sbjct: 14  STRQPSLTVCLEQVHKPHNVSAILRS-----CDAVGINRIHGVWDQKTKLRKGTAMGSEH 68

Query: 187 IPYIRI-SNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                + S++ DA+  +     Q +   LS DS    E +      A+ILG E  G   +
Sbjct: 69  WVKTEMHSSIDDAVGVLKQQNMQVLVTHLSDDSVDFREIDY-TQPTAIILGQERHGATEE 127

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               A     + M G++++LNVS AAA+ LY  Q
Sbjct: 128 AIALADKNIVIPMVGMVQSLNVSVAAALVLYEAQ 161


>gi|291539916|emb|CBL13027.1| rRNA methylases [Roseburia intestinalis XB6B4]
          Length = 289

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 65/146 (44%), Gaps = 8/146 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           L++L+ + DP N+G ++R+       G+I    T   ++P       +S  G++  +P+ 
Sbjct: 134 LLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPK----TIRSTMGSIYRVPFF 189

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +L   +  +                  ++     K A ++G EG GL  +  + A +
Sbjct: 190 ITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGLSDEIADLADT 249

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M G +++LN + +A++ +Y T
Sbjct: 250 YIKIPMQGQVESLNAAISASLLMYET 275


>gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
 gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
          Length = 210

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 22/166 (13%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAV------------- 175
           R   L ++++ V+ PHN  AILRS     CD +   + ++ P++  +             
Sbjct: 16  RQPDLTVLMERVHKPHNFSAILRS-----CDAVGVLEAHAIPAKHGIPNLEEAEDLSLKG 70

Query: 176 --LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
               +++  A + +     ++   A   + + GFQ +    S+      Q        ++
Sbjct: 71  KTFNETSGSAAKWVGLQLHADTASAFAHLKARGFQVLAAHFSERAVDYRQADYTRPTCIL 130

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           LG E  G+ P+  E A +   + M G++++LNVS AAAV L+  Q 
Sbjct: 131 LGTEKWGVSPEAAELADAHILIPMVGMVQSLNVSVAAAVILFEAQR 176


>gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae]
          Length = 225

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L++V+ PHNI A++R+A A     I     +  + +  L+ +A+G+   + 
Sbjct: 1   MRQPDLTVCLENVHKPHNISAVIRTADAVGISQIHAI--WCQNSTKSLSAAAAGSNHWVK 58

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
               + +  A+    + G Q +      +    ++I   +   +ILG E  G+  +    
Sbjct: 59  VKTHATIEKAISTCKAAGMQILAAHLTKQAIDFRQIDYTQPTCIILGQERTGISKQALAL 118

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A    H+ M G++++LNVS A+A+ LY  Q
Sbjct: 119 ADHNIHIPMMGMVQSLNVSVASALILYEAQ 148


>gi|257146495|emb|CAX30784.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Conomelus anceps]
 gi|257146515|emb|CAX30799.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Delphacidae sp.]
          Length = 239

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L++V+ PHNI A++R+A A    GI          S+    +A+    H 
Sbjct: 14  AMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSNHW 70

Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             +R  +++ +A+    + G Q +    ++      Q   N    +ILG E  G+  +  
Sbjct: 71  VKVRTHASIENAISTCKAAGMQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A    H+ M G++++LNVS A+A+ LY  Q
Sbjct: 131 ALADHNIHIPMMGMVQSLNVSVASALILYEAQ 162


>gi|91788542|ref|YP_549494.1| tRNA/rRNA methyltransferase SpoU [Polaromonas sp. JS666]
 gi|91697767|gb|ABE44596.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas sp. JS666]
          Length = 260

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 22/256 (8%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARL 81
           R++   K+++  +Q S    +   ++L G H   AAL     P+  IF    +    A +
Sbjct: 14  RDNTLIKELRKLSQDSTAYRKQGRVWLEGDHLCRAALARGKKPTLAIFS--ESFWPSAPV 71

Query: 82  DWDANLPHPFPVK--TVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           +W         +K   +P   + +I G E+    G  LE      P    +      ++L
Sbjct: 72  EWSRA-----AIKNIVIPDALLPEISGLESPARMGFVLEL-----PAASGLEAGAASVIL 121

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA AF    II  K  +   S  + ++  GA  H     +  +  A
Sbjct: 122 DRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGMGA--HFALQLVEGVEPA 179

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
              + +     +  SS     L Q+      A  +G EG+G+       +     +  PG
Sbjct: 180 --ALAALTVPIVVTSSHQGSFLHQQPLPRPCAWAMGHEGQGVSDDLMARSALKVRIDQPG 237

Query: 259 IIKALNVSNAAAVALY 274
             ++LNV+ AAA+ LY
Sbjct: 238 GEESLNVAAAAAICLY 253


>gi|322825586|gb|EFZ30499.1| hypothetical protein TCSYLVIO_3210 [Trypanosoma cruzi]
          Length = 408

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 48/157 (30%)

Query: 135 LMVLDHVNDPHNIGAILRSA-------VAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++ LDHV DP N+GAI+RSA       V  SCD        S   +A +A++++G +EH+
Sbjct: 195 VLFLDHVIDPGNVGAIMRSAFFLGVRCVVLSCD--------SAGCTAAMARASAGVMEHM 246

Query: 188 PYIR---------------------------ISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
              R                            + +T  +  +   G Q  G +    +P+
Sbjct: 247 AVYRSVAPTTTFLENTIAQHRARGDPCSLEMYAAITMPMDAIMRSGRQAKGETEKGGEPM 306

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            + +      L+LG E KGL P+     +   H+  P
Sbjct: 307 RRRL------LLLGNEDKGLPPEVVRLCSHAVHIPSP 337


>gi|114319697|ref|YP_741380.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226091|gb|ABI55890.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 220

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 9/153 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEH 186
           R   L ++LD V+ PHN+ AILR+     CD +   + ++ S   +  V   ++SG  + 
Sbjct: 16  RQPDLQVLLDQVHKPHNLSAILRT-----CDAVGVPRAHAVSRHQDFTVHRAASSGTGQW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +     ++L  A++ +   G +        +    +++   K   L+LGAE +G+  +  
Sbjct: 71  VAVETHADLPAAVRAVQGQGMKVYAAHLSEQAVDYRQVDYTKPCCLLLGAEKEGVSEEGA 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             A     + M G+  +LNVS AAAV L+  Q 
Sbjct: 131 ALADGHVIIPMFGLGASLNVSVAAAVILFEAQR 163


>gi|218510308|ref|ZP_03508186.1| rRNA methylase protein [Rhizobium etli Brasil 5]
          Length = 218

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +  + LD V DP N+G I+R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 62  REGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 121

Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            R +      ++  +W  ++ G+S      + +      + +   + L++G E  GL  +
Sbjct: 122 ARATP-----EEFLAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQ 175

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 176 LAKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 212


>gi|307721996|ref|YP_003893136.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306980089|gb|ADN10124.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 262

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 8/179 (4%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + + KIVG +  H  +A    P     ++       +++LD++    N+G+I RSA A  
Sbjct: 79  EEMGKIVGHKIHHNCMAHGIRP---DDIELSSAGDRIIMLDNITSSENVGSIARSAAALG 135

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHSWGFQTIG--LSSD 215
                  K  SP      A   S    H+  I +  ++ + ++ + + G++     ++ D
Sbjct: 136 VKSYFLPKS-SPHPFNRRALRVSMGYAHMLGIHVYKDIFETIEALKAAGYRVYAAEVTPD 194

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S  PL       K  LI+G EGKG+     +    +  + M   IK+ NV  AA++ +Y
Sbjct: 195 ST-PLSSLHVTSKWVLIMGHEGKGISQDILDVCDEVVSIEMQEGIKSFNVGVAASIMMY 252


>gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512]
          Length = 286

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +  + LD V DP N+G I+R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 129 REGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 188

Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            R +      ++  +W  ++ G+S      + +      + +   + L++G E  GL  +
Sbjct: 189 ARATP-----EEFLAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQ 242

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 243 LAKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|317131314|ref|YP_004090628.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
 gi|315469293|gb|ADU25897.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
          Length = 263

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD +        L+++ DP N+GA+LR+A A    G++ +   +   +  + +++ GA+ 
Sbjct: 109 LDKINLGGAYAALENIRDPGNLGAVLRTAEALGLSGVLLSAGCADIYAPKVVRASMGAVF 168

Query: 186 HIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243
              + +  +L  AL  +   G QT+  L+  + + L Q +++   +A I G EG GL   
Sbjct: 169 RTAFFQTEDLPAALSLLREKGLQTLAALAGGTTRLLTQLDLRGGVVAAI-GNEGAGLSDA 227

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +       + M G  ++LN + AAA+ L+
Sbjct: 228 CVDACDPF-TIPMKGRAESLNAAAAAAIILW 257


>gi|254718366|ref|ZP_05180177.1| tRNA/rRNA methyltransferase (SpoU) [Brucella sp. 83/13]
 gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
 gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
          Length = 297

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + L++G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652]
 gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652]
          Length = 286

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +  + LD V DP N+G I+R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 129 REGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 188

Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            R +      ++  +W  ++ G+S      + +      + +   + L++G E  GL  +
Sbjct: 189 ARATP-----EEFLAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQ 242

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 243 LAKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|71065108|ref|YP_263835.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71038093|gb|AAZ18401.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
          Length = 268

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 12/255 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP 88
           K ++S   ++R   +     + GVH + AAL +  P  +I    +T            LP
Sbjct: 18  KLVKSLLTQARQRKKHGLTVIEGVHLIDAALRSDYPFDQILVSESTHKNPEVQQILTRLP 77

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P+ T+     + I         +A+   P  +P+L  +    L  +L+ V D  N+G
Sbjct: 78  TYTPILTLADALYESIRSLGTGIDIMAMIKVP--APSLSMINEDCL--ILNDVQDSGNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            +LR+A A     I+ T   + + S    ++  GA   +      ++ + L  + +  F 
Sbjct: 134 TLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFALNIYEGLSVQEVLDHVETPLFA 193

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           T   SS +   + Q      IA I+G EG+G+  +  + AT +A L  P   ++LNV+ A
Sbjct: 194 T---SSHTDTVIYQHDLKSPIAWIMGHEGQGVCDELMQCATPIA-LPQPNGQESLNVAIA 249

Query: 269 AAVALYIT--QNHFA 281
            ++ LY T  Q ++A
Sbjct: 250 GSLCLYETLRQRNYA 264


>gi|330931647|ref|XP_003303484.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
 gi|311320500|gb|EFQ88423.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
          Length = 657

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           L++ +D V D  N+GAI RSA     D IIT   ++   S +  K++SGA E IP  R+
Sbjct: 474 LILYIDGVVDEGNLGAIARSAYVLGVDAIITPTHHTAEWSPIAIKASSGAAEAIPLFRV 532


>gi|121604675|ref|YP_982004.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
           CJ2]
 gi|120593644|gb|ABM37083.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
           CJ2]
          Length = 259

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 115/277 (41%), Gaps = 42/277 (15%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
           FS+  +H +   R++   K ++  +Q +    +   ++L G H   AAL    + +  + 
Sbjct: 5   FSVPVTHVSS--RDNALIKDLRRLSQDNTAYRKQGRVWLEGDHLCRAALARGLKPVMAVF 62

Query: 73  ATK-NALARLDW-----------DANLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALE-- 117
           +      A  +W           DA LP              +I G E+    G  LE  
Sbjct: 63  SESFWPFAHAEWAQAAIKNIVISDALLP--------------EISGLESPARMGFVLELP 108

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TAP L   + +V       +LD V D  N+G+ILRSA AF    II  K  +   S  + 
Sbjct: 109 TAPPLQANVASV-------ILDRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVL 161

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++  GA  H   +R+    D  + + +     +  SS     L Q+      A  +G EG
Sbjct: 162 RAGMGA--HF-ALRLVEGVDP-EALAALTVPIVVTSSHHGSFLHQQPIPMPCAWAMGHEG 217

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G+       A+    +  PG  ++LNV+ AAA+ LY
Sbjct: 218 QGVSDDLMARASLKVRIDQPGGEESLNVAAAAAICLY 254


>gi|189346688|ref|YP_001943217.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
 gi|189340835|gb|ACD90238.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
          Length = 179

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 2/160 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L +  L+A     + ++L ++    N+G++ R+A A   + II T   +      +
Sbjct: 10  EMKRLSAEELEASPKYPVYLMLHNIRSMWNVGSMFRTADAAGIERIILTGYTATPPRKEI 69

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILG 234
            K+A GA + + +   ++  DA+ ++ + G +  GL       L   I  ++  I L++G
Sbjct: 70  DKTALGAQDVVKWEYSADPLDAIDRLKAEGVRICGLEIAENSRLYTAIVKEEFPICLVVG 129

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E  G+  +      S+  +   G+  +LNV+ AA VAL+
Sbjct: 130 NEVDGIDDEVLSCCDSVLEIPQYGVKHSLNVAVAAGVALF 169


>gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3]
 gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3]
          Length = 286

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 16/153 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V DP N+G I+R+A A    G+I     +   S    ++  G++   P  R S  
Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARAS-- 192

Query: 196 TDALQKMHSWGFQT--------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++  SW            +  S D +K    +     + L++G E  GL P+    
Sbjct: 193 ---VEEFLSWKKSANVSVVATHLAGSVDYRK---IDYAGKPVVLLMGNEQSGLPPELAGR 246

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A  +A +   G   +LN++ A AV L+  + H 
Sbjct: 247 ADQLARIPQQGRADSLNLAIATAVMLFEARRHL 279


>gi|302346096|ref|YP_003814449.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
 gi|302149891|gb|ADK96153.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
          Length = 198

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 17/158 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   HN+G++ RSA AF  + +      +   +A + K+A G  + + +    
Sbjct: 32  LIVVLDDVRSLHNVGSVFRSADAFRVEAVYLCGITATPPNAEIHKTALGGEDSVDWRYFE 91

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-----------------IALILGAE 236
              DA++++H  G     +         Q++                      A++LG E
Sbjct: 92  RTEDAIEELHRQGVFVYSVEQVEGSTKLQDLNTQNPTNHQHPTPNTQHPSPHYAIVLGNE 151

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            KG++    + +     +   G   +LNVS    + ++
Sbjct: 152 VKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIW 189


>gi|226227758|ref|YP_002761864.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226090949|dbj|BAH39394.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 265

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++R+A A      I         +A + + + GAL H P + +S 
Sbjct: 110 ILVLDALQDPGNVGTVIRTAAALGVSATIALPGTVDLWNAKVVRGSMGALFHHPVLAMS- 168

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             D   ++    F  +   +D      L      D++AL+   EG GL        T   
Sbjct: 169 WEDCAAQLGLAAFVIMAADTDGVNIADLRPGQVPDRVALVASNEGAGLSAHLASAVTQRV 228

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M   +++LNV  A  + L+
Sbjct: 229 AIAMEPTVESLNVGVATGILLH 250


>gi|148656461|ref|YP_001276666.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
 gi|148568571|gb|ABQ90716.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
          Length = 432

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++V + +++P N+G  LR+A A   + ++      P     + ++A GA+  IP    +
Sbjct: 280 VILVAEQISNPENLGMTLRTADAAGAEAVVVAGGADPLHRECV-RAARGAVGRIPIYSCA 338

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L   + ++ + G   +G + + ++ L        +A+++G E  GL   T    +S+  
Sbjct: 339 DLPAWIGQLRTQGIPVVGATGNVERELYDVDLPIPLAIVVGNETDGLTDATLAACSSLVR 398

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M     +LNV  AA V LY
Sbjct: 399 IPMAPGQDSLNVGVAAGVLLY 419


>gi|313676389|ref|YP_004054385.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312943087|gb|ADR22277.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 181

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 3/149 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V+ + +++VLD+V   +N+G+  R+  AF  + I      +      + K+A GA E + 
Sbjct: 20  VKKNPIVLVLDNVRSMNNVGSAFRTGDAFLIEKIYLCGITAQPPHREINKTALGATETVE 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQ 245
           +    N  DA+ K+   G++ + +  +++   LE+     ++K A I G E  G+  +  
Sbjct: 80  WEHFENTLDAVAKLKQDGYKIMSVEQAENSLSLEKFAPKADEKYAFIFGNEVYGVEQEVV 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +     +   G   +LN+S +  V L+
Sbjct: 140 DQSDHCLEIPQFGTKHSLNISVSIGVVLW 168


>gi|294155366|ref|YP_003559750.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291599973|gb|ADE19469.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 243

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 16/145 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPYIRI 192
           ++ LD + DP NIG I+R   +F  D +I      Y+P       +++ G+      +++
Sbjct: 103 IVFLDDLQDPGNIGTIIRLCKSFDIDTLIVKNFDIYNPK----CLRASQGSFFKTNIVQV 158

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETA 248
               D L K+ S  F  I    D +     E+KN     K  L+LG EG G+     +  
Sbjct: 159 DKY-DELSKLMSKDFSIISTLLDKEAT---ELKNFTFPKKSVLVLGNEGNGISQNAID-- 212

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
            S   +++P   ++LNV+  AA+ L
Sbjct: 213 LSKHKVYIPISFESLNVATCAAIIL 237


>gi|297661624|ref|XP_002809335.1| PREDICTED: probable methyltransferase TARBP1-like [Pongo abelii]
          Length = 348

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P + 
Sbjct: 189 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVIGSLQCISDKQFQHLSVS-AEQWLPLVE 247

Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 248 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 307

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   GII++LNV  + A+ ++
Sbjct: 308 DVCVEIPQQGIIRSLNVHVSGALLIW 333


>gi|218130161|ref|ZP_03458965.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
 gi|317476654|ref|ZP_07935898.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987665|gb|EEC53993.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
 gi|316907117|gb|EFV28827.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 270

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGAI RSA A   D ++ T       +    + + G++  +P+   + L   L K++  
Sbjct: 133 NIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPW---TWLDGPLGKLNDL 189

Query: 206 GFQT--IGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF+T  + L+ DS    +  + N+ K+A+++G EG GL  KT   A  +  + M   + +
Sbjct: 190 GFRTAAMALTDDSISIDDPILANEPKLAIVMGTEGDGLSHKTIAEADYVVRIPMSHGVDS 249

Query: 263 LN 264
           LN
Sbjct: 250 LN 251


>gi|149369726|ref|ZP_01889578.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
 gi|149357153|gb|EDM45708.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
          Length = 179

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD++   +NIG++ R+A AF  + I      +      + K+A GA E + +  + 
Sbjct: 27  LIIILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIQKTALGATESVAWEHVE 86

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDKI-ALILGAEGKGLRPKTQETATS 250
           N  D +  + + G     +  ++    LE+ E+  DK  A++ G E KG++      +  
Sbjct: 87  NTEDLIVSLKNEGVTICAIEQAEQSVSLEKYEVSKDKTYAVVFGNEVKGVQQTVVTESDV 146

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G   +LN+S +  V ++
Sbjct: 147 VIEIPQYGTKHSLNISVSTGVVVW 170


>gi|110825988|ref|NP_005637.3| probable methyltransferase TARBP1 [Homo sapiens]
 gi|74739787|sp|Q13395|TARB1_HUMAN RecName: Full=Probable methyltransferase TARBP1; AltName: Full=TAR
            RNA-binding protein 1; AltName: Full=TAR RNA-binding
            protein of 185 kDa; Short=TRP-185
 gi|1184692|gb|AAC50379.1| TAR RNA loop binding protein [Homo sapiens]
 gi|56204383|emb|CAI22828.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|56205978|emb|CAI22931.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|119590399|gb|EAW69993.1| Tar (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|162318782|gb|AAI56250.1| TAR (HIV-1) RNA binding protein 1 [synthetic construct]
 gi|1586092|prf||2203267A TRP-185 protein
          Length = 1621

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P + 
Sbjct: 1462 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVS-AEQWLPLVE 1520

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 1521 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1580

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1581 DVCVEIPQQGIIRSLNVHVSGALLIW 1606


>gi|312214449|emb|CBX94441.1| hypothetical protein [Leptosphaeria maculans]
          Length = 584

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 41/177 (23%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ +D V D  N+GA+ RSA     D I+T+  +    S +  K+++GA E IP  ++ 
Sbjct: 394 LILYIDGVLDEGNLGAMARSAYFLGVDAIVTSTHHIAPWSHIALKASAGAAEAIPIFKVG 453

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----------------------- 230
              D L K    G++    ++    P   +    +I+                       
Sbjct: 454 KPADFLAKSSEAGWKIYSSNTAPPAPPSNQSPETEISKVVYTLPQSSKRLDVDHCPVVEH 513

Query: 231 ---LILGAEGKGLRPKTQETATSMAHLHMPGI----------IKALNVSNAAAVALY 274
              L++GAE  GL    Q++   +AH ++ GI          + +LNVS AA++  Y
Sbjct: 514 PTILMMGAESSGL----QKSLLRLAHYNV-GIPHGRDVNEVGVDSLNVSVAASLLCY 565


>gi|332236257|ref|XP_003267321.1| PREDICTED: probable methyltransferase TARBP1 [Nomascus leucogenys]
          Length = 1621

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P + 
Sbjct: 1462 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVS-AEQWLPLVE 1520

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 1521 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1580

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1581 DVCVEIPQQGIIRSLNVHVSGALLIW 1606


>gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 299

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-----KSASGAL 184
           R +  ++VLD V    NIGAI+R++ A    GI+       S+ A +A     +++ G +
Sbjct: 113 RTTGDIIVLDGVKIVGNIGAIVRTSFALGAAGIVLVD----SDLATIADRRLVRASRGYV 168

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243
             +P + +++  DA+      G   +   ++    + E    ++++AL+LG+E  G    
Sbjct: 169 FSLPIV-LASRADAIAHFRRTGIPLVAFDTEGDLAVSELRDADEQLALLLGSEKTGTSRS 227

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  A+    + +    ++LNVS  A +ALY
Sbjct: 228 FESIASHSVSIPINPAAESLNVSVCAGIALY 258


>gi|255099812|ref|ZP_05328789.1| putative RNA methylase [Clostridium difficile QCD-63q42]
          Length = 176

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  + +++LD + DP N+G I+R+A +   D II  K      +  + +S  G++  +  
Sbjct: 26  KKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNI 85

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  S   + +  + S  F  +    +++   ++     K+AL++G E  G+  +    + 
Sbjct: 86  IDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSD 144

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + + G  ++LN + ++A+ +Y
Sbjct: 145 ILVKIPIYGKAESLNAAISSAILMY 169


>gi|309808395|ref|ZP_07702295.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
 gi|308168363|gb|EFO70481.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
          Length = 159

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG+I + +     ++ + +S  G+  H+  ++ +++
Sbjct: 18  VILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDI 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
              L    + G        D    +    K   ++ LI+G E  G+  + Q       ++
Sbjct: 77  EQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYI 136

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LN + AA + +Y
Sbjct: 137 PIKGKAESLNAAVAAGIMIY 156


>gi|323343216|ref|ZP_08083447.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463280|gb|EFY08475.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 247

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
            T Q E + + G  +V A L    R I F  +  K+      +   +     +K +  + 
Sbjct: 4   RTHQGEIMIVSGKISVKAILKERKRDIEFVAILDKHNDKESRYVERIAEGLKIKRMSREE 63

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSC 159
           +D +   +  H G  +     +S  L+ +    L LM ++ V DP N+G I R+  +   
Sbjct: 64  MDALATNKT-HGGYLVSCGKRISDPLNYLPKQTLSLMCIEGVTDPFNLGEICRTVASLGF 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS----D 215
           DGIIT         A L ++++GA E + +++  +L+  L+ + +   + + +++    D
Sbjct: 123 DGIITPSYDFYEHEAKLIRASAGASESLWWMQSDDLSSDLKAIKA---KKVVMAAAHRGD 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGL 240
             + L      D++ + LG   +GL
Sbjct: 180 ESESLLTYKLPDRVCICLGGALRGL 204


>gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38]
 gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38]
          Length = 220

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R     + ++ V   HN  A++RS   F    + +  +++  S   +  + A GA + + 
Sbjct: 31  RTKHFTIAMEDVFQLHNTSAVMRSCEVFGIQELNVVEQKFGKS---IDKEIAMGAEKWVD 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247
             R S++ D +  +   G+Q I  +  +   L  E       AL  G E  GL  +  + 
Sbjct: 88  INRFSSIQDCITNLKQKGYQIIATTPHNDSCLLHEFDITQPSALFFGTERDGLSEEVMQQ 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     + M G  ++LN+S +AA+ +
Sbjct: 148 ADGFLKIPMVGYTESLNISVSAAIII 173


>gi|222084674|ref|YP_002543203.1| rRNA methylase protein [Agrobacterium radiobacter K84]
 gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84]
          Length = 286

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  +  + LD V DP N+G I+R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 129 KAGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATMGSVFAVPV 188

Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           ++ +      ++  +W  +T G+S      + +      + K   + L++G E  GL   
Sbjct: 189 VKATP-----EEFLAWK-KTAGVSVVATHLAGAVDYRTIDYKKKPVVLLMGNEQSGLPDA 242

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 243 LAKEADALARIPQAGRADSLNLAVATAVMLFEARRHL 279


>gi|241758743|ref|ZP_04756856.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
 gi|241320951|gb|EER57164.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
          Length = 263

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 21/182 (11%)

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSC 159
           VG EA+ +  +L  A  +   +D  + + L      +VL+ V DP N G ILRSA A   
Sbjct: 82  VGNEALSKITSLTDADDVMTWIDIPQQAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGI 141

Query: 160 DGIITTKRYSPSESAVLAKSASGA---LEHIPYIRISNLTDALQKMHSW----GFQTIGL 212
             I+         S  + ++  GA   L     + +S   +  Q    W    G + IGL
Sbjct: 142 RQIVCGNDSVDIWSPKVLRAGMGAHFLLSIFNRVELSAWMETYQH-QIWATALGGRNIGL 200

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                   E ++ +   A + G EG G+    +E A +   + M G  ++LNV+ AA V 
Sbjct: 201 -------YEMDL-SQSCAWVFGNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVC 252

Query: 273 LY 274
           L+
Sbjct: 253 LF 254


>gi|312898933|ref|ZP_07758321.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
           F0359]
 gi|310620095|gb|EFQ03667.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
           F0359]
          Length = 271

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L  V N + ++ L+ + DP N+G ILR+A A +   +  +       +    +SA GA+ 
Sbjct: 111 LPEVANERPILYLEAIQDPGNLGTILRTAAAANVGAVFLSPDCVDLYNGKTVRSAMGAIF 170

Query: 186 HIPYI------RISNLTDALQKMHS---WGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +P +      RIS   D  +++ +    G   +    D ++P           +  G E
Sbjct: 171 KVPVVQNVSLERISAFCDEKKRILTGTLLGANKLYTQVDWRQP---------TVIAFGNE 221

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G GL     E       + M    ++LN++ + AV LY
Sbjct: 222 GNGLSQACAEACRQALTIPMKSHTESLNLATSVAVVLY 259


>gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
 gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
          Length = 297

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYIALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + L++G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLIVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|315499963|ref|YP_004088766.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315417975|gb|ADU14615.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 264

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ + L+ V DP N+G I+R+A A +  G+I         S    ++  G++  +P ++ 
Sbjct: 119 EVWVALEQVRDPGNLGTIIRTADAAAIGGVILIGDCVDPFSVETVRATMGSIFALPIVKC 178

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +   + +     W    +G    +K             L++G E  GL P+  +T     
Sbjct: 179 TR-EEFIADRGRWTGSVVGTLLTAKHDHRSAPYKRPTLLLMGTEQSGLTPEIADTCDLHV 237

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M G   +LN+S A  + +Y
Sbjct: 238 KIPMRGRADSLNLSVATGIMIY 259


>gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A]
 gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A]
          Length = 218

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R   L ++++ V+ PHN+ AI+R+     CD +     +  +++      +K + G+ + 
Sbjct: 16  RQPHLTVLIEDVHKPHNLSAIIRT-----CDAVGILDLHVVNQNGKYPTFSKVSQGSEKW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKT 244
           +      ++ DA+  +    F+ I  +  SK  ++    N  + +A++LGAE  G+  + 
Sbjct: 71  VFITTYISIDDAINALKRRKFK-IYAAHFSKTAIDYRNVNYTEPVAILLGAEKWGVSKEA 129

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +       + M G++++LNVS AAAV L+  Q
Sbjct: 130 AQLVDGHITIPMLGMVQSLNVSVAAAVILFEAQ 162


>gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 248

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++VLD V +P N+G ILR+A+A   + +I T       +A   ++  GA   + +I + 
Sbjct: 104 FVLVLDGVAEPGNMGTILRTALAVGLERVILTSGTVDPYNAKAVRAGMGAQFRLEFIYVE 163

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L    Q      F      +D      +        L+ G EG G++     +      
Sbjct: 164 SLESLSQDFPEAKFWLTSPRADISL-YNKGFDLSGSFLVFGEEGDGIK---DFSVGERVT 219

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + MPG  ++LNV+ AA + L+
Sbjct: 220 IPMPGDTESLNVAQAATLFLF 240


>gi|326797288|ref|YP_004315108.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
 gi|326548052|gb|ADZ93272.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
          Length = 256

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 20/222 (9%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           AA NNP+    +L  T    A  DW       F  + V  + +  I G +     LA+  
Sbjct: 51  AAQNNPALNASKLYVTP---AYQDWSTR----FEKQDVTERQMATIAGTKTPQGILAVVP 103

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF-SCDGIITTKRYSPSESAVLA 177
              + P  +   N+   + L  + DP N+G ILRS   F     +++     P    V+ 
Sbjct: 104 MAAIQPEQN---NTLAAVYLHEIQDPGNLGTILRSLAWFGGVRCLLSPGSVDPFNPKVI- 159

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S+ GA+ H+P + +    D L +     F  IG      +PL           I G E 
Sbjct: 160 RSSMGAVFHVP-MELDVSIDTLPER----FAKIGCLDMDGEPLSSPEFKACDCYIFGNEA 214

Query: 238 KGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYITQ 277
           +G+ P+ +  A +     +PG+  I++LN++ A  +++Y  Q
Sbjct: 215 RGV-PRDKLEALNAKPFTIPGVGLIESLNLATAVNLSIYERQ 255


>gi|320160887|ref|YP_004174111.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994740|dbj|BAJ63511.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 193

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 6/145 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           ++LD++    N+GAI RSA       I         E+  + K+A GA + + +   +N 
Sbjct: 43  VLLDNLRSTWNVGAIFRSADGAGVSRIHLCGITPTPENPQVVKTALGAEKSVDWEYHANG 102

Query: 195 LTDALQKMHSWGFQTIGL-SSDSKKPLEQEIK-NDK--IALILGAEGKGLRPKTQETATS 250
           LT AL +  S G+  I L   ++  PL   +  ND   I L+ G E  G+ P   E   +
Sbjct: 103 LTLAL-RAKSDGYHLIALEGGENSLPLHTILPLNDSRPILLVAGNEVTGIDPDIFELCDT 161

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI 275
           +  L M GI  +LNV+ A  +ALY+
Sbjct: 162 VTFLPMFGIKNSLNVAVATGIALYL 186


>gi|146299980|ref|YP_001194571.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146154398|gb|ABQ05252.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 262

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 29/155 (18%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--------- 184
           L++V + +  P N+GA+LR+A A + D ++     S   +  + +S+ G L         
Sbjct: 115 LILVAESLEKPGNVGAVLRTADAANLDAVLIADPKSDLYNPNIVRSSVGCLFTNQIATGT 174

Query: 185 --EHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             E I +++   IS  +  LQ   S+  Q     +               AL++G E  G
Sbjct: 175 TEEIIAFLKEKNISFYSATLQNSTSYHTQNFTAPT---------------ALVVGTEATG 219

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L  K ++ AT    + M G I ++NVS AAA+ ++
Sbjct: 220 LSQKWRDEATQNIIIPMQGEIDSMNVSVAAAILIF 254


>gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 294

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ VL +V DP N G +LR A A   D ++ T       +    +++ G+L H+P    
Sbjct: 140 RLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPVAVG 199

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
             +  A+  +   G + +      +  L+ E+    +    A I G E  GL  +T+  A
Sbjct: 200 VPVETAVTGLREAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEETRALA 259

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            ++  + + G  ++LN++ AAAV LY
Sbjct: 260 DAVVRVPIHGRAESLNLATAAAVCLY 285


>gi|329912122|ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545704|gb|EGF30848.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
          Length = 262

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 15/256 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALA-- 79
           R++  YK+++     S+   +     L GVH   A L +   P   +    AT N     
Sbjct: 7   RDNPLYKELKQLATSSQARRKAGRTLLDGVHLCEAYLQHLGMPQLCVVSQSATINQEVVP 66

Query: 80  -RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             L  +A       +     Q I ++  +  V     +ET  L+ P   A+  S +L  L
Sbjct: 67  LLLQCEAGRTQCIVLPDALYQAISQV--EHGVGLMFVVETPQLVMPV--ALAGSAVL--L 120

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D++ DP N+G+ILRSA A   + +  +   + + S  + ++  GA  H   ++I    D 
Sbjct: 121 DNLQDPGNMGSILRSAAAAGIEYVFCSPGTAFAWSPKVLRAGMGA--HF-LLKIFENVDL 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            + + +     +  SS   + +        +A + G EG+G+  +    AT    +   G
Sbjct: 178 AEVVRNASVPVLATSSHVAQRVYDIDLTQPVAWLFGHEGQGVEEQLLALATHQVAIPHIG 237

Query: 259 IIKALNVSNAAAVALY 274
            +++LNV+  AAV  +
Sbjct: 238 AMESLNVAACAAVCFF 253


>gi|157874196|ref|XP_001685588.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128660|emb|CAJ08792.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 2043

 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 5/163 (3%)

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            L P     +   +++V   + +P NI  + R    F+ + I+  ++        +A + S
Sbjct: 1874 LHPRSLRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVESIVVPEKKVFEHPHFVAAARS 1933

Query: 182  GALEHIPYIRIS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238
              L  IP+  ++  +L   L+ +   G+  +G+   +   PLEQ    ++ A++LGAEG+
Sbjct: 1934 AEL-WIPWEEVAPKDLPCYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVLGAEGQ 1992

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
            G+             +   G+I++LNV  A A+ +Y  T+ H 
Sbjct: 1993 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2035


>gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17]
 gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17]
          Length = 178

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 5/145 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   +N+G++ RS  AF  + I      +   +A + K+A G  + + +   +
Sbjct: 25  LVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGEDSVDWKYFA 84

Query: 194 NLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +A+ ++ + G+    +     S   + LE E +  + A++ G E KG+     +   
Sbjct: 85  TTEEAVNQLKADGYFVYSIEQVEGSTKLQRLETE-QGQRYAVVFGNEVKGVSQSVVDLCD 143

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               +   G   +LNVS  A + ++
Sbjct: 144 GCLEIPQFGTKHSLNVSVTAGIVIW 168


>gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 230

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 11/155 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGA 183
           A R   L + L+ V+ PHN+ AI+R+A A     +     TT+ Y+   SA  + S    
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSSAAGSNSWVQV 73

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             H      ++++DA+  + S   Q +    SD+     +        +++G E  G+  
Sbjct: 74  KTH------THISDAIAHLKSQNMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITE 127

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    A     + M G++++LNVS A+A+ LY  Q
Sbjct: 128 EALALADQDIIIPMIGMVQSLNVSVASALILYEAQ 162


>gi|254700959|ref|ZP_05162787.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 5 str. 513]
 gi|261751478|ref|ZP_05995187.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261741231|gb|EEY29157.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
          Length = 297

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R A A    G+I     +   S    ++  G++  +P 
Sbjct: 140 KGNDVYVALDRVRDPGNLGTVIRIADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPL 199

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            R S   D L    +W  GF  + + +  K  ++       N  + LI+G E +GL    
Sbjct: 200 YRASE-ADFL----NWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSL 254

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 255 AGACDKLARIPQAGRADSLNLAIATGVMLY 284


>gi|112491246|pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
           Protein 1
 gi|112491247|pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
           Protein 1
          Length = 184

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P + 
Sbjct: 25  SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVS-AEQWLPLVE 83

Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 84  VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 143

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   GII++LNV  + A+ ++
Sbjct: 144 DVCVEIPQQGIIRSLNVHVSGALLIW 169


>gi|86358937|ref|YP_470829.1| RNA methylase protein [Rhizobium etli CFN 42]
 gi|86283039|gb|ABC92102.1| probable RNA methylase protein [Rhizobium etli CFN 42]
          Length = 273

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 15/197 (7%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL-------ETAPLLSPTLDAVRNSQLLMV 137
             P   PV     + +D +VG   +H+G LAL       E A      LDA+    L++V
Sbjct: 75  RFPASVPVYVAEAKVLDGVVGFH-LHRGVLALGKREDRGEAA-----LLDALPERALVLV 128

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
              +++  N G++ R+A AF  D ++  +           + + G++  +P+ R     D
Sbjct: 129 GCGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVGSVLSVPHRRGGKALD 188

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L  +   GF    LS   K  +       ++AL++G EG+GL P+        A +   
Sbjct: 189 LLLALAQRGFAIWTLSPHGKTDIRAIPAAARMALVIGTEGEGL-PEALLARFQSARIPQS 247

Query: 258 GIIKALNVSNAAAVALY 274
             + +LN + A  +AL+
Sbjct: 248 DQLDSLNAATATGIALF 264


>gi|223996685|ref|XP_002288016.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977132|gb|EED95459.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 364

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 27/168 (16%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYI 190
           L++VLD++    N+G+I RSA A  C  I+TT    R   + +  LAKSA GA   +   
Sbjct: 185 LILVLDNLRSAANVGSIFRSADACGCLEIVTTGITPRPGANGAEKLAKSALGAERVVATR 244

Query: 191 RISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIK----------------------N 226
             +    AL+ + +    F  +G+ +  +  +  E++                      +
Sbjct: 245 HFATTKQALEYLRNKRPNFMLVGMETTERSKVYTELQYPGSKDSLTTTDSISIEDEVLTS 304

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +AL LG E  G+         ++  + M G   +LNV++ A V +Y
Sbjct: 305 PGVALFLGNEVSGVDTDIMPLLDAVVEIPMFGKKNSLNVASCAPVVMY 352


>gi|271970249|ref|YP_003344445.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
 gi|270513424|gb|ACZ91702.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
          Length = 274

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 8/190 (4%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGA 149
           P+  V P+ + ++  +E+    L +    LL   LD +R     L +  D   +P NIG 
Sbjct: 73  PLAEVAPELLWELGERESETPEL-IAVGALLPDDLDRLRPGPGFLGVAFDRPGNPGNIGT 131

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL-----QKMHS 204
           ++RSA AF   G+I T   +        ++++G+L  +P +R  +  D L     Q+   
Sbjct: 132 LVRSADAFGAAGLIVTGHAADVYDPKSVRASTGSLFSLPVVRRPSPDDVLDWVGAQRDGG 191

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              + +G       P+          L++G E  G+  + +E    +  + M G   +LN
Sbjct: 192 LPIRIVGTDESGSTPISGCDLTVPTLLVVGNETAGMSARWREMCDEVVRIPMGGAASSLN 251

Query: 265 VSNAAAVALY 274
            ++A  + LY
Sbjct: 252 AASAGTLVLY 261


>gi|307325425|ref|ZP_07604627.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306888894|gb|EFN19878.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 277

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ VL +V DP N G +LR A A   D ++ T       +    +++ G+L H+P    
Sbjct: 114 RLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASVDPYNPKAVRASVGSLFHLPVAVG 173

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-----ALILGAEGKGLRPKTQET 247
             +  A+  +   G + +      ++ L+ E+ +D++     A I G E  GL   T+  
Sbjct: 174 VPVERAVSGLREAGARVLAADGAGERDLDSEL-DDRLLGAPTAWIFGNEAWGLPEATRAL 232

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A  +  + + G  ++LN++ AAAV LY
Sbjct: 233 ADEVVRVPIHGRAESLNLATAAAVCLY 259


>gi|213692751|ref|YP_002323337.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524212|gb|ACJ52959.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458909|dbj|BAJ69530.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 292

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 17/152 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + V   V DP N G ++R+A A  CD ++         +  + +S +G+L H+P + +S 
Sbjct: 133 IAVFWQVRDPGNAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAGSLFHLPVLAMS- 191

Query: 195 LTDAL------QKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI------ALILGAEGKGLR 241
            TD          +  W     G  ++ +KP     +  DK       A++ G E +GL 
Sbjct: 192 -TDEFFTWTGDHNLDVWAADVYG--TEERKPESLPAVLADKAAVEAPKAVLFGNEARGLE 248

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           P        +  + + G  ++LN+  +AAV L
Sbjct: 249 PDILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|159037501|ref|YP_001536754.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157916336|gb|ABV97763.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 296

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 19/234 (8%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHP-FPVKTVPPQTIDKIV----- 105
           G   V  AL  P   + +L  T  AL R LD  A       PV TV    +  +      
Sbjct: 46  GPQAVREALARP-HTVLELFGTPAALDRHLDLVARATTADVPVSTVTDDALAGLAETVAP 104

Query: 106 -GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            G  AV Q L L  A +L+      R  +L+ VL  + DP N G +LR+A A     ++ 
Sbjct: 105 QGLVAVCQHLDLPLATVLA------RTPRLVTVLAGIRDPGNAGTVLRTADAAGAQVVVF 158

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                   +  + ++++G+L H+  +R S+    +  + + G   +  +      L+   
Sbjct: 159 AGAAVDPYNGKVVRASAGSLFHVDVVRASDPPQVITDLRAAGLAVLATTGYGADDLDDLA 218

Query: 225 KNDKIAL----ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ++A     I G+E  GL  +    A +   + + G  ++LN++ AAAV LY
Sbjct: 219 DAGRLAAPTAWIFGSEAHGLPDELTTAADARVRVPLHGRAESLNLAAAAAVCLY 272


>gi|256752503|ref|ZP_05493360.1| RNA 2-O ribose methyltransferase substrate binding
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748638|gb|EEU61685.1| RNA 2-O ribose methyltransferase substrate binding
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 158

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 65  SRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
            ++I ++  +K A   +    NL       V T     + K+ G +  HQG+    A   
Sbjct: 20  GKEIEKIYVSKTAGGNISKIINLAKEAGIVVSTTDNDILSKLAGSQN-HQGVVAVGAVYK 78

Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              +D +       +    L++LD + DPHN+GAI+RSA AF   GII  K+        
Sbjct: 79  YFDVDDLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEAFGVHGIIIPKKAGCRSKCY 138

Query: 176 LAKS 179
             K+
Sbjct: 139 CCKN 142


>gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 278

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 15/173 (8%)

Query: 112 QGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-- 167
           QGL      L SP  DAV  S+  L+ VL +V DP N G +LR A A   D ++ T    
Sbjct: 99  QGLVGVCRFLDSP-FDAVVRSRPTLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASV 157

Query: 168 --YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
             Y+P       +++ G+  H+P      +  A+Q +   G + +      +  L+ E+ 
Sbjct: 158 DLYNPKA----VRASVGSHFHLPVAVGVPVERAVQGLREAGVRILAADGAGEHDLDAELD 213

Query: 226 NDKI----ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +    A I G E  GL  +T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 214 AGTMGGPTAWIFGNEAWGLPEETRALADAVVRVPIHGRAESLNLATAAAVCLY 266


>gi|322494359|emb|CBZ29660.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 2035

 Score = 47.4 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 5/163 (3%)

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            L P     +   +++V   + +P NI  + R    F+ + I+  ++        +A + S
Sbjct: 1866 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESIVVPEKKVFEHPHFVAAARS 1925

Query: 182  GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238
              L  IP+  +   +L   L+ +   G+  +G+   +   PLEQ    ++ A++LGAEG+
Sbjct: 1926 AEL-WIPWEEVVPKDLPYYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVLGAEGQ 1984

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
            G+             +   G+I++LNV  A A+ +Y  T+ H 
Sbjct: 1985 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2027


>gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074]
          Length = 275

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL +V DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P
Sbjct: 121 RLVAVLSNVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKA----VRASVGSLFHLP 176

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  +   G + +      +  L+ E+    +    A I G E  GL  +T
Sbjct: 177 VAVGVPVETAVTGLREAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEET 236

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A ++  + + G  ++LN++ AAAV LY
Sbjct: 237 RALADAVVRVPIHGRAESLNLATAAAVCLY 266


>gi|260770799|ref|ZP_05879728.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|260614036|gb|EEX39226.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
          Length = 228

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R + L + L+ V+ P+N+ A++R+A A    G+       P+E    L  +++GA   + 
Sbjct: 16  RQTDLTVCLEEVHKPNNVSAVIRTADAV---GLHKIHAVWPNEQMRTLTHTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               ++  DA++ + + G Q +  + SD              A+I+G+E  G+  +    
Sbjct: 73  VETHNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIVGSEKVGISKQALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADQDIVIPMVGMVQSLNVSVASALILYEAQRQ 164


>gi|115439859|ref|NP_001044209.1| Os01g0742000 [Oryza sativa Japonica Group]
 gi|113533740|dbj|BAF06123.1| Os01g0742000 [Oryza sativa Japonica Group]
          Length = 163

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PL 220
           ++   + S   S V++K+++G+LE I  +   N+   L      G++ +G +   K  PL
Sbjct: 1   VVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPL 60

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            + +  +   L+LG+EG GLRP  + + T +  + +PG
Sbjct: 61  SEVVPGEPTILVLGSEGTGLRPLVERSCTHL--VRIPG 96


>gi|237748844|ref|ZP_04579324.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229380206|gb|EEO30297.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 260

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 9/151 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--- 183
           D    +Q  ++LD + DP N+G+ILRSA A     +  +   +   S  + ++  GA   
Sbjct: 109 DCPELTQTGVLLDRIQDPGNLGSILRSAAAAGIRQVFCSPGTAAVWSPRVLRAGMGAHFL 168

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           LE    + +  L +  +         I  +  +KK +     N  +A +LG EG+G+  +
Sbjct: 169 LEVFEDVSLEKLIETAK------IPVIATTPYTKKTIYDFDLNRPVAWLLGHEGRGVDER 222

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A+    +   G +++LNV+  AAV  +
Sbjct: 223 LMVMASDKLVIPHMGAMESLNVAACAAVCFF 253


>gi|220912252|ref|YP_002487561.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219859130|gb|ACL39472.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 297

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 28/177 (15%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLA 177
           L   LDA    +L+ VL  V DP N G +LR+A +   D ++ T      Y+P       
Sbjct: 121 LESVLDA--GPRLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTGSSVDIYNPKA----V 174

Query: 178 KSASGALEHIPYI---RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----- 229
           +S +G+L H+P +    +++L +A +          G  S +   L+ E    ++     
Sbjct: 175 RSTAGSLFHLPVVLGAEVAHLAEACKSRGIGILAADGYGSLNLDALQDENARRRLTGSGP 234

Query: 230 ----------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                     A + G E +GL     E A     + + G  ++LN+  AA V LY +
Sbjct: 235 DSAYDLGGPTAWLFGNEAQGLSEAELELADHRVAVPVYGAAESLNLGTAATVCLYAS 291


>gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 308

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   + ++ T      Y+P       +++ G+L H+P
Sbjct: 145 RLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKS----VRASVGSLFHLP 200

Query: 189 YIRISNLTDALQKMHSWGFQ----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
                 +  A+  +   G +          D    L++       A + G E  GL  +T
Sbjct: 201 VAVGVPVDQAVAGLKDAGVRILAADGAGDDDLDDELDKGTMGGPTAWVFGNEAWGLPEET 260

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A ++  + + G  ++LN++ AAAV LY
Sbjct: 261 RALADAVVRVPIHGKAESLNLATAAAVCLY 290


>gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 229

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 11/150 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYS-PSESAVLAKSASGALEH 186
           R S L ++++ V  PHN+ AI+R+     CD  G++     +  +++     +A G+ + 
Sbjct: 18  RISDLTILVEQVEKPHNLSAIMRT-----CDAAGVLEAHAVARETKTRTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P     N+  A   +   GF+  G  LS D+      +      A +LGAE  GL    
Sbjct: 73  VPLKDHKNIEAAALFLKKQGFKLYGTNLSVDAIDYRYCDY-TGPTAFVLGAEKWGLSEPA 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  ++ M G++++LNVS AA+  L+
Sbjct: 132 TRLMDAAIYIPMRGMVQSLNVSVAASALLF 161


>gi|315178841|gb|ADT85755.1| tRNA guanosine-2'-O-methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 228

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R + L + L+ V+ P+N+ A++R+A A    G+       P+E    L  +++GA   + 
Sbjct: 16  RQTDLTVCLEEVHKPNNVSAVIRTADAV---GLHKIHAVWPNEQMRTLTHTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               ++  DA++ + + G Q +  + SD              A+I+G+E  G+  +    
Sbjct: 73  VETHNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIVGSEKVGISKQALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADQDIVIPMVGMVQSLNVSVASALILYEAQRQ 164


>gi|289422379|ref|ZP_06424225.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
 gi|289157214|gb|EFD05833.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
          Length = 260

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++V+D V DP N+G I+R+A A   D II  K      +  + +SA G++ ++  + + N
Sbjct: 117 IVVVDRVQDPGNMGTIIRTADAAGFDLIICIKGTVDYYNPKVVRSAMGSMFYMDMMSLDN 176

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             +A   +       +    D++   ++    +  AL++G E  G+       +  +  +
Sbjct: 177 -EEARDLLKVNDIDIVSSYLDTENYYDKVDYKENTALVVGNEANGISDFWIRQSDVLVKI 235

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G  ++LNV+ ++A+ +Y
Sbjct: 236 PMFGKAESLNVAVSSALLMY 255


>gi|283787717|ref|YP_003367582.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282951171|emb|CBG90863.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 229

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +  +
Sbjct: 72  QVKTHRTIGDAVSHLKGRGMQVLATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|260063491|ref|YP_003196571.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
 gi|88782935|gb|EAR14109.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
          Length = 273

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSPSESAVLAKSASGALEHIPY 189
           L++V      P N+GA+LR+A A S D +I        Y+P+    + +S+ G L  +P 
Sbjct: 120 LILVAQAPEKPGNLGALLRTADAASLDAVIVADLKGDLYNPN----VIRSSVGCLFTVPV 175

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + S   +AL  + +        S       +Q       A+ +G E  GL       A 
Sbjct: 176 AQAST-EEALSYLKARDIAVYAASLGGSVRYDQADYLGASAIAVGTEATGLTEAWTRQAE 234

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +   + M G I ++NVS AAAV L+
Sbjct: 235 ACVEIPMAGAIDSMNVSVAAAVLLF 259


>gi|223985232|ref|ZP_03635316.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
           12042]
 gi|223962810|gb|EEF67238.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
           12042]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            + VL+ + DP N+G   R+  A  C G++   R   +    + KS++GA E + +    
Sbjct: 91  FIAVLEGIEDPFNLGYAFRTLYAAGCTGVLMGSRDWQTAQPTIVKSSAGASEQLAWCLCE 150

Query: 194 NLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSM 251
           +L  A+++    G        SD+    + +  N  I L +G E +GL R   +++  ++
Sbjct: 151 DLGAAVRQCRQAGCVLYCAQRSDAIDYFDADF-NQPIVLAIGGELRGLSRDVLEQSDQNI 209

Query: 252 AHLHMPGIIKALNVSNAAA 270
              +   +  ALN ++A A
Sbjct: 210 VIPYARPVRSALNGTSAVA 228


>gi|119472959|ref|ZP_01614815.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119444628|gb|EAW25938.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 228

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 11/159 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+  HN+ AI+RSA A  C  +       P     L  + SG  ++   
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAV---WPENQKWLTNNTSGGSKNWLE 72

Query: 190 IRI-SNLTDA--LQKMHSWGFQTIG--LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
             +  N+ DA  + + H+   Q +   LS D+     +EI   K  A+I+G E  G+  +
Sbjct: 73  THLHKNIDDAATMMRQHNPNVQILATHLSEDAVDF--REIDYTKPTAIIVGQEKTGISAQ 130

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + A     + M G++++LNVS AAA+ L+  Q+   K
Sbjct: 131 ALKHADQNIIIPMQGMVQSLNVSVAAALILFEAQHQREK 169


>gi|78187117|ref|YP_375160.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
           273]
 gi|78167019|gb|ABB24117.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
           273]
          Length = 219

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 17/153 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------ITTKRYSPSESAVLAKSASG 182
           R   L +V+D+VN PHN+ A++R     SCD +       ++ +R   +     A S+  
Sbjct: 17  RQPDLTVVMDNVNKPHNLSALIR-----SCDAVGIHDLHAVSKQRSIHTRQHAAAGSSRW 71

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLR 241
              H+ +  I     AL++    G Q +  ++ +     +EI      A+ILGAE  G+ 
Sbjct: 72  TRLHL-WHEIKEPCSALRRE---GMQLLAATNVAAAVDFREIDYTLPTAVILGAEWDGVS 127

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +    A     +   G++++LNVS AAAV L+
Sbjct: 128 KEAIGEADRTIMVQTHGMVESLNVSVAAAVILF 160


>gi|73952576|ref|XP_536342.2| PREDICTED: similar to TAR RNA binding protein 1 [Canis familiaris]
          Length = 948

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L++V   ++ P N+G + R+   F    +I        +    + S S A + +P + 
Sbjct: 789 SRLIVVASLIDKPTNLGGLCRTCEVFGASALIVDSLQCVRDKQFQSLSVS-AEQWLPLVE 847

Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    L D LQ+  + G+  IG+   +K   L Q    ++  L+LG E +G+     +  
Sbjct: 848 VKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLTQYSFPERSLLLLGNEREGIPANLIQEL 907

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   GII++LNV  + A+ ++
Sbjct: 908 DVCVEIPQQGIIRSLNVHVSGALLIW 933


>gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
 gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
          Length = 218

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 3   AMRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 61  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153


>gi|207723369|ref|YP_002253768.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588568|emb|CAQ35531.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 245

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + D  N+G+ILR A A     +  T   + + SA   ++  GA  H+  +    
Sbjct: 101 CVILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAGMGAHFHLNIVEHCT 160

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                 ++H      +  SS ++  +        +  + G EG G+  +     T ++ +
Sbjct: 161 FESMHARLH---VPLLATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLSVTTPIS-I 216

Query: 255 HMPGIIKALNVSNAAAVALY 274
             PG +++LNV+ AAA+ L+
Sbjct: 217 PQPGGMESLNVAAAAAICLF 236


>gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 229

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|71668065|ref|XP_820976.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886341|gb|EAN99125.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 408

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 48/157 (30%)

Query: 135 LMVLDHVNDPHNIGAILRSA-------VAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++ LDHV DP N+GAI+RSA       V  SCD        S   +A +A++++G +EH+
Sbjct: 195 VLFLDHVIDPGNVGAIMRSAFFLGVRCVVLSCD--------SAGCTAAMARASAGVMEHM 246

Query: 188 PYIR---------------------------ISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
              R                            + +T  +  +   G Q  G +    +P+
Sbjct: 247 AVYRSVVPTTTFLENTIAQHRARGDPCSLEMYAAITMPMDAIMRSGRQAKGETEKGGEPM 306

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            + +      L+LG E +GL P+     +   H+  P
Sbjct: 307 RRRL------LLLGNEDRGLPPEVVRLCSHAVHIPSP 337


>gi|310778758|ref|YP_003967091.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
 gi|309748081|gb|ADO82743.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
          Length = 251

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ L   P+   ++ ++ ++  +++LD + DP N+G I+R + A     I+  K     
Sbjct: 85  QGIIL-IYPMKESSIASIGDN--IVILDRIQDPGNLGTIIRVSDAAGYKDIVLLKGSVDV 141

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGLSSDSKKPLEQEIKNDK 228
            +    +S+ G+L ++ +I +    D L K  +   +      L  D+    +  I   K
Sbjct: 142 YNEKTVRSSMGSLFNMNFIYMEE--DELIKFMAEKNYKSTATALREDAVSYTDI-IPGSK 198

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            A+I G EG+G+  +  E + S   + + G  ++LNV+ A  + LY
Sbjct: 199 NAIIFGNEGQGVSERLIEVSDSKVIIPIYGSAESLNVAVATGIVLY 244


>gi|256832338|ref|YP_003161065.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685869|gb|ACV08762.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 275

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+ VL  V DP N G ++R+A A   D +I         +  + +S++G+L H+P I  +
Sbjct: 117 LVAVLTDVRDPGNAGTVIRAADAAGADVVILAGDSVDLMNPKVVRSSAGSLFHMPVITNA 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-------ALILGAEGKGLRPKTQE 246
           +L D    +   G    G +  +   L+  ++           A + G E +GL  + Q 
Sbjct: 177 SLVDVHGALKMAGIPLFGTTPYADLTLDDLVEPQGPTSVGAPHAWVFGNEAQGLSVEDQS 236

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              S+  + M G  ++LN++ AA + LY +
Sbjct: 237 MCDSLVRIPMYGRAESLNLAMAATICLYTS 266


>gi|148653655|ref|YP_001280748.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1]
 gi|148572739|gb|ABQ94798.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1]
          Length = 278

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L+ V D  N+G +LR+A A     II TK  + + S    ++  GA   +        
Sbjct: 134 LILNDVQDNGNVGTLLRTAAAVGIKTIICTKGSAQAWSPKTMRAGMGAQFGLTIYEGIEA 193

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + L  +    F T   SS +   + ++  N  +A ++G EG+G+     + AT +A L 
Sbjct: 194 DEVLAYLRLPVFAT---SSHTDNIIYKQNLNRPVAWVMGHEGQGVCDDIMKLATPVA-LP 249

Query: 256 MPGIIKALNVSNAAAVALYIT--QNHF 280
            P   ++LNV+ A A+ +Y T  Q H+
Sbjct: 250 QPNGQESLNVAIAGALCMYETLRQRHY 276


>gi|189191132|ref|XP_001931905.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973511|gb|EDU41010.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 651

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ +D V D  N+GAI RSA     D I+T   ++   S +  K++SGA E +P  R+ 
Sbjct: 468 LILYIDGVVDEGNLGAIARSAYVLGVDAIVTPTHHTAEWSPIAIKASSGAAEAMPLFRVK 527

Query: 194 NLTDALQKMHSWGFQ 208
                 Q     G++
Sbjct: 528 EPEQFFQSSSQVGWR 542


>gi|332883970|gb|EGK04250.1| hypothetical protein HMPREF9456_01278 [Dysgonomonas mossii DSM
           22836]
          Length = 250

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 12/147 (8%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + +L++ LD + DP N+G I+R A  +    I  ++      +  + ++  GAL  +  I
Sbjct: 100 DDELVLALDGIQDPGNMGTIIRLADWYGIHHIFCSQDTVDVYNPKVVQATMGALARVN-I 158

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             ++L+D L +  +      G   D +   E++I +  I +++G EG G+RP+ +   T 
Sbjct: 159 HYTDLSDFLTR--NKHLSVYGTFLDGENMYEKKITSHGI-IVMGNEGNGIRPEIERLITE 215

Query: 251 MAHLHMPG------IIKALNVSNAAAV 271
              L++P         ++LNV+ A A+
Sbjct: 216 --KLYIPNYPVGNPTSESLNVAIATAI 240


>gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 229

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +      K    +EI   +   +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|288918245|ref|ZP_06412600.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
 gi|288350415|gb|EFC84637.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
          Length = 320

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 109/238 (45%), Gaps = 16/238 (6%)

Query: 47  ENLFLY-GVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
           E LFL  G   V+AAL+  +  + +L   ++ALAR   L     +P  F V       + 
Sbjct: 71  EGLFLVEGAQAVTAALH--ADALVELFIGESALARHAQLTAGTGVPVRF-VTDAAAAALS 127

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           + V      QGL +  + L    L  +   +L+ V +  NDP N G ++RSA A   D +
Sbjct: 128 ETV----TPQGL-VGVSELPGHRLADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAV 182

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +              +S++G+L H+P I  ++    ++++   G Q +  S  + + L+ 
Sbjct: 183 VFVGDSVDPFGGKCVRSSAGSLFHLPVIVAADALAVVRELRELGCQVLATSGHADRDLDD 242

Query: 223 ----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +     A + G E +GL   T  +A +   + + G  ++LN++ A+A+ +Y +
Sbjct: 243 LAAAGVLAGPTAWVFGNEARGLTAATAASADTAVRVPVYGQAESLNLAVASALCMYAS 300


>gi|146096859|ref|XP_001467955.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134072321|emb|CAM71027.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 2045

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 5/163 (3%)

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            L P     +   +++V   + +P NI  + R    F+ + ++  ++        +A + S
Sbjct: 1876 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLVVPEKKVFEHPHFVAAARS 1935

Query: 182  GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238
              L  IP+  +   +L   L+ +   G+  +G+   +   PLEQ    ++ A++LGAEG+
Sbjct: 1936 AEL-WIPWEEVVPKDLPGYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVLGAEGQ 1994

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
            G+             +   G+I++LNV  A A+ +Y  T+ H 
Sbjct: 1995 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2037


>gi|313888401|ref|ZP_07822069.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845598|gb|EFR32991.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 248

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 5/148 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  R S   + LD + +P N+G I+RSA A   DG+I +       +    +S+  ++  
Sbjct: 102 DFDRTSGKFLYLDDIREPGNLGGIIRSADALGLDGLIISPESCDLYNPKTVRSSMSSIFR 161

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P   +     A + +    F  +  S ++          DK  +++G E KG+      
Sbjct: 162 LPIYFM-----AREDLVDLDFNILATSLENSTSTRDYDFKDKDIVVIGNEAKGVSDFLMT 216

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A    ++ +   + +LN + AA++ +Y
Sbjct: 217 HAKGFLNIPISDKVDSLNANVAASIIIY 244


>gi|322501925|emb|CBZ37008.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 2045

 Score = 47.0 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 5/163 (3%)

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            L P     +   +++V   + +P NI  + R    F+ + ++  ++        +A + S
Sbjct: 1876 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLVVPEKKVFEHPHFVAAARS 1935

Query: 182  GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238
              L  IP+  +   +L   L+ +   G+  +G+   +   PLEQ    ++ A++LGAEG+
Sbjct: 1936 AEL-WIPWEEVMPKDLPGYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVLGAEGQ 1994

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
            G+             +   G+I++LNV  A A+ +Y  T+ H 
Sbjct: 1995 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2037


>gi|317970561|ref|ZP_07971951.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CB0205]
          Length = 267

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 6/142 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-- 191
            ++ LD + DP N+G ++R+A+A   + +       P +  VL  SA  AL  +P+ R  
Sbjct: 110 FVLALDQLQDPGNLGTLMRTALAAGVNDLWLGGGADPCQPKVLRASAGAALA-LPHWRDP 168

Query: 192 -ISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             + L   L +  + G Q +   +  D   P  +        L+LG EG GL P+    A
Sbjct: 169 DRTGLVARLAEAAAAGHQLVATLVDPDRAIPYWELDWTRPTVLLLGNEGAGLHPELAALA 228

Query: 249 TSMAHLHMPGIIKALNVSNAAA 270
           +    +     +++LNV  AAA
Sbjct: 229 SHRVTIPHSPAVESLNVGVAAA 250


>gi|114573243|ref|XP_514281.2| PREDICTED: probable methyltransferase TARBP1 [Pan troglodytes]
          Length = 1621

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P + 
Sbjct: 1462 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVS-AEQWLPLVE 1520

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   ++   L Q    +K  L+LG E +G+     +  
Sbjct: 1521 VKPPQLIDYLQQKKTEGYTIIGVEQTARSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1580

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1581 DVCVEIPQQGIIRSLNVHVSGALLIW 1606


>gi|268608876|ref|ZP_06142603.1| RNA methyltransferase, TrmH family [Ruminococcus flavefaciens FD-1]
          Length = 259

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 120/274 (43%), Gaps = 29/274 (10%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I + KD+   KL      Y+K+ S ++K R   Q     L G+     AL + S  + 
Sbjct: 2   ENIITSKDNPTVKL------YQKLSS-SKKERL--QYGLFVLEGLRITEDALRDGS--VS 50

Query: 70  QLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            L+ T+NA ++       A+L     V  +  +  ++I   ++     A+   P  S   
Sbjct: 51  HLILTENAYSKTADELLQADL-RDTKVLVISNELGNRIASTDSTQGVFAICRIP--SGRT 107

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSASGA 183
            A  +    +VL  + DP N+G I+R+A A   +G+I   +   YSP     + +S  G+
Sbjct: 108 PAFCDDGRYVVLYGLQDPGNVGMIIRTADALGINGVILSGSCDLYSPK----VIRSTMGS 163

Query: 184 LEHIPYIRISNLTDAL-QKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +  +  + + N TDAL   +   G ++    +  D+ K  E      + A+ +G EG GL
Sbjct: 164 VFRMA-VSVINDTDALFALLEENGVESSAAVIDKDAVKVTECSFTGRQ-AVFIGNEGNGL 221

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   T    + M G I +LN + AA + ++
Sbjct: 222 PADVAHRCTRRVTIPMSGNINSLNAAMAAGILMW 255


>gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 256

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 10/156 (6%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGA 183
           L + R   L + L+ V+ PHN+ A+LRS     CD  GI         ++ +   +A G+
Sbjct: 18  LLSTRQPSLTVCLEQVHKPHNVSAVLRS-----CDAVGINRIHGVWDQKTKIRKGTAMGS 72

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
              +     +++ DA+  +     Q +   LS DS    + +      A+ILG E  G  
Sbjct: 73  EHWVKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDY-TQPTAIILGQEKHGAT 131

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +    A     + M G++++LNVS AAAV LY  Q
Sbjct: 132 EEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQ 167


>gi|329944512|ref|ZP_08292677.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530277|gb|EGF57156.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 304

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L+  LD  R   L+ VL    DP N G I+R+A A   D ++  +      +  + +S +
Sbjct: 146 LATALDGAR---LVAVLTQAQDPGNAGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTA 202

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE----QEIKNDKIALILGAEG 237
           G+L H+P I    L DA+  +H  G     L++D +   +    + +     A +LG E 
Sbjct: 203 GSLFHLPVITGVALDDAVAALHEAGLTV--LAADGRGDFDLFEAESLLEAPSAWLLGNEA 260

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL  +    A ++  + + G  ++LNV+ AAAV LY
Sbjct: 261 HGLPSEALSRADAVVSIPIYGKAESLNVAAAAAVCLY 297


>gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 47/266 (17%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +++KK+ +   + R         L G+H V  AL   ++K+ +LL T +    L+ +  +
Sbjct: 12  KEWKKLNTKKGRKRQNK----YILDGLHLVKEALK-ANKKVEELLIT-SKFEHLN-EIEI 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           P    V  +  + + K + +    QG+    ++E   +  P  D        ++LD V D
Sbjct: 65  PDETKVIMISEE-VSKSISETQTPQGIFGIVSIEEEKITYPQKDV----GAWLMLDGVQD 119

Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPS----------ESAVLAKSASGALEHIPY 189
           P NIG ++R+A A    G+I    +   Y+P              V+  + SG + H   
Sbjct: 120 PGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKD 179

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +++      L + H+  +  +G  +D              AL++G EG G+  +  E  +
Sbjct: 180 MKVPVFGSELNE-HAREYTNVGQHTD-------------FALVMGNEGNGMSKEILEMTS 225

Query: 250 SMAHLHMPGI-IKALNVSNAAAVALY 274
              +L++P    ++LNV+ AA + ++
Sbjct: 226 --INLYIPITNAESLNVAVAAGILMF 249


>gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 261

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 21/255 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--- 87
           K++++  Q+ R        F+ G+  V+ A+   +  I QL+   + L R  +  +L   
Sbjct: 11  KQIRALRQR-REREATGLFFIEGIRNVTEAVQAQA-PIEQLIVAPDLL-RSQFAQDLVEQ 67

Query: 88  --PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL--MVLDHVND 143
                 P+  V  +    +  K+   QGLA       +   D VR  Q L  + L+ ++D
Sbjct: 68  QRQQAIPILEVSGEVFASLSSKDG-PQGLAAVVRQQWASLAD-VRPDQGLCWIALNAISD 125

Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           P N+G ILR+  A    G+I     T  Y P+      +++ G L     ++ +   +  
Sbjct: 126 PGNLGTILRTGDAVGAAGVILLGDCTDPYDPAT----GRASMGTLFSQRLVK-ATWAEFS 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           Q     GF  +G +  +            + L++G+E +GL  + Q    ++  + M G 
Sbjct: 181 QWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRGQ 240

Query: 260 IKALNVSNAAAVALY 274
             +LN++ A  V LY
Sbjct: 241 ADSLNLAVATGVLLY 255


>gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 223

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 9/150 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L ++++ VN PHN+ AILR+     CD     +    SE   +    S A     
Sbjct: 17  CRMRNLTVLVEAVNKPHNLSAILRT-----CDAAGVFEANFISEKDKVKTFNSTAQGSQK 71

Query: 189 YIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
           +++++N      A+ ++   GF+  G + + +    +    ++    +LGAE  GL  + 
Sbjct: 72  WVKLNNHETTISAVSELKKKGFKLYGTTLNERSTDYRNFDYSENTCFVLGAEKWGLSDQL 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    + M G++++LNVS A ++ L+
Sbjct: 132 ISKVDESIFIPMSGMVQSLNVSVATSILLF 161


>gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 250

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PSESAVLAKSASGA 183
           L + R   L + L+ V+ PHN+ A+LRS     CD +   + +     ++ +   +A G+
Sbjct: 12  LLSTRQPSLTVCLEQVHKPHNVSAVLRS-----CDAVGINRIHGVWDQKTKIRKGTAMGS 66

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
              +     +++ DA+  +     Q +   LS DS    + +      A+ILG E  G  
Sbjct: 67  EHWVKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDY-TQPTAIILGQEKHGAT 125

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +    A     + M G++++LNVS AAAV LY  Q
Sbjct: 126 EEAIAVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQ 161


>gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 274

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 33/157 (21%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           + + LD V DP N+G I+R+A A    G+I    TT  +SP       +S  G++  IP 
Sbjct: 122 VYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPET----VRSTMGSIFSIPL 177

Query: 190 IRI---------SNLTDALQKMHSWG---FQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
            R          +N    +   H  G   ++TI    D K P         I L++G E 
Sbjct: 178 YRFNENAFLDWSTNFKGMIIGAHLQGAVDYRTI----DFKGP---------IILLMGNEQ 224

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +GL          +A +   G   +LN++ A A+ LY
Sbjct: 225 QGLSNALANRCHQLARIPQNGHADSLNLAIATAIMLY 261


>gi|51892235|ref|YP_074926.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51855924|dbj|BAD40082.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 273

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           LS TLD +    L++VLD + DP N+G  +RS  A    G +      P    V+ + A 
Sbjct: 108 LSRTLDDL-GPGLVLVLDGLQDPGNLGTAIRSLEAMGGGGAVVAGGVDPYNPKVV-RGAM 165

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           G+L  +P ++   + DAL  + + G +  +  +  +  P   ++     A+++G+E  G 
Sbjct: 166 GSLFRLPVVK-RPIGDALAGLRAAGRRIYLAEAGGALAPWAVDLARGA-AVVVGSEAAGP 223

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P+ +  A  +  + M G  ++LN   AA++  Y
Sbjct: 224 SPEARALADGVVSIPMAGPTESLNAGVAASLLAY 257


>gi|228470153|ref|ZP_04055062.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
 gi|228308291|gb|EEK17146.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
          Length = 262

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 25/192 (13%)

Query: 95  TVP-PQTIDKIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHN 146
           T+P P+ I+++ G ++    LAL   P       LL PTL          +LD V DP N
Sbjct: 78  TLPDPKQIERVSGLKSPRPLLALCEIPTIEAPQALLQPTL----------LLDDVQDPGN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G +LR+        ++ T+  +   S  + ++  GAL  +   R ++ T  L  +    
Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADIYSPKVLQATMGALARVQVYRYTDRTALLTMLKKTE 187

Query: 207 FQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGII----K 261
              IG   D        + +++   L+LG EG G+ P+   +A     + +P  +    +
Sbjct: 188 IPVIGTFIDGVPLRTLRLASEQPYILVLGNEGNGISPEL--SALVSQRITIPSPVDSHCE 245

Query: 262 ALNVSNAAAVAL 273
           +LNV+ A A+ +
Sbjct: 246 SLNVAVAGAIVM 257


>gi|315127927|ref|YP_004069930.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315016441|gb|ADT69779.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 228

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 11/154 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+  HN+ AI+R+A A  C  +       P +   L  + SG  ++   
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRTADAVGCHHVHAV---WPEKQKWLTNNTSGGSKNWLD 72

Query: 190 IRI-SNLTDALQ--KMHSWGFQTIG--LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
             +  N+ DA    + H+   Q +   LS D+     +EI   K  A+I+G E  G+  K
Sbjct: 73  THLHKNIDDAAASIRAHNPDVQILATHLSEDAVDF--REIDYTKPTAIIVGQEKTGISEK 130

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             E A     + M G++++LNVS AAA+ L+  Q
Sbjct: 131 ALEYADQNIIIPMQGMVQSLNVSVAAALILFEAQ 164


>gi|255531174|ref|YP_003091546.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
 gi|255344158|gb|ACU03484.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
          Length = 249

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL  P   A   +   +VLD V DP N+G I+R+A  F    II +       +    ++
Sbjct: 95  PLFKP---ATPKNLFSLVLDGVQDPGNMGTIIRTADWFGFKNIICSNNCVEVYNPKTVQA 151

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G+L  +  I   +L   L  +        G   D K   + +  N+ + +ILG EG+G
Sbjct: 152 TMGSLSRV-NIFYEDLPGILTNVK---LPVFGAVLDGKSIYKTDWGNEGL-VILGNEGQG 206

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           + P   +  T    +   G  ++LNV+ +AA+
Sbjct: 207 ITPPVMKLITHPVTIPRIGGAESLNVAISAAI 238


>gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357]
          Length = 229

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMTGMVQSLNVSVASALILYEAQRQ 164


>gi|168335308|ref|ZP_02693406.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 262

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 62/147 (42%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            ++ +   ++L+ + DP N+G I+R+A     D I  TK      S  + ++  GA+  I
Sbjct: 105 TIKQNGTYLILEGIKDPGNLGTIVRTAYGLFVDAIFLTKDCVELYSPKVVRATMGAISKI 164

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             IR   +T  +        +           L     +   A+++G E  G+   T+  
Sbjct: 165 DIIRNYEMTSYVDFFRENKVKIYATDLYQSNNLYTTKFDGSSAIVIGNEATGISEYTRAQ 224

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A S   +     +++LN + A ++ LY
Sbjct: 225 ADSTIKIPTRDNLESLNAAIATSIVLY 251


>gi|167622328|ref|YP_001672622.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|167352350|gb|ABZ74963.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 228

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  +NI A+LR+A A     +     +S  E  V   +ASG+ + +  
Sbjct: 16  RQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV--WSELEMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ +      Q +  + SD+     +       A+ILG E  G+ P     A
Sbjct: 74  RVHQSMQQAVDEFRGKEMQILATTFSDTAVDFREIDYTRPTAIILGNERDGVSPAGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS AAA+ +Y  Q  
Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQ 164


>gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
 gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
          Length = 270

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P
Sbjct: 114 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPK----CVRASVGSLFHLP 169

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 + +A+  +   G + +         L+ E+    +    A + G E  GL  +T
Sbjct: 170 VATGVPIEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEET 229

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A ++  + + G  ++LN++ AAAV LY
Sbjct: 230 RALADAVVRVPLHGKAESLNLATAAAVCLY 259


>gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
 gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
          Length = 305

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 11/150 (7%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+     V DP N G ++RSA A  C+ ++         +  + +S +G+L H+P + + 
Sbjct: 145 LIAAFWQVRDPGNAGTVIRSADAAGCECVVLVGDCVDVFNPKVIRSTTGSLFHLPILTMD 204

Query: 194 NLTDALQKMHSWGFQTI-----GLSSDSKKPL-----EQEIKNDKIALILGAEGKGLRPK 243
             T A Q  H  G   +     G    S + L     ++        ++ G E +GL   
Sbjct: 205 ESTFA-QWCHERGMTLVAADVYGTKERSPRTLPVVLAQRTFAQQPTCVLFGNEARGLETG 263

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             E A  +  + + G  ++LN++ +A++ L
Sbjct: 264 MLEQADDIVSIPIYGKAESLNLATSASIML 293


>gi|260103135|ref|ZP_05753372.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|260083045|gb|EEW67165.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
          Length = 255

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG++ +   +   +    ++  G+  HI  I+  +L
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172

Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +               D + K L    K  ++ALI+G E  G+       +    ++
Sbjct: 173 ADVITDFQDAAIPVYASMLDKTAKQLPDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LN + AA + +Y
Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252


>gi|284034068|ref|YP_003383999.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283813361|gb|ADB35200.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 279

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +V D    P NIG+I+RSA AF  DG+I T   +        ++++G+L  +P +R+ 
Sbjct: 116 LGVVFDRPTGPGNIGSIIRSADAFGADGLIVTGHAADVYDPKAVRASTGSLFALPAVRVP 175

Query: 194 NLTDALQKM---HSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETA 248
           +  + ++ +    + G   + + +D    ++    +      L++G E  GL    +E A
Sbjct: 176 SQREVMEWVAARRAAGVPIVVVGTDEHGAVDVYDFDFTQPTLLLVGNETTGLSAAWKELA 235

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + M G   +LN +NAA   LY
Sbjct: 236 DELVRIPMTGAASSLNAANAATAVLY 261


>gi|161507842|ref|YP_001577806.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
 gi|160348831|gb|ABX27505.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
          Length = 255

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++ DP N+G I+R+A A   DG++ +   +   +    ++  G+  HI  I+  +L
Sbjct: 114 VLLDNLADPGNVGTIIRTADAAGFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDL 172

Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D +               D + K L    K  ++ALI+G E  G+       +    ++
Sbjct: 173 ADVITDFQDAAIPVYASMLDKAAKQLPDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LN + AA + +Y
Sbjct: 233 PIKGKAESLNAAVAAGIMIY 252


>gi|91218034|ref|ZP_01254985.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
 gi|91183781|gb|EAS70173.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
          Length = 263

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 31/156 (19%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGAL----- 184
           L+M+ +    P NIGA+LR+A A   D +I     T  Y+P+    + +S+ G +     
Sbjct: 115 LIMIAEAPEKPGNIGALLRTADAAKLDAVIIANPKTDLYNPN----IIRSSVGTVFTNSI 170

Query: 185 ------EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
                 E I +++ +N+     K+++   Q      DS   L +  K +  A+++G E +
Sbjct: 171 GTGTTSEIIDFLKNNNI-----KIYAAALQ------DSSSYLAEGFK-EATAIVVGTEHQ 218

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           GL  + +  A  +  + M G + +LNVS +AA+ ++
Sbjct: 219 GLSEEWRINADKIIKIPMEGQVDSLNVSVSAAILIF 254


>gi|111224586|ref|YP_715380.1| putative 23S rRNA methylase [Frankia alni ACN14a]
 gi|111152118|emb|CAJ63846.1| putative 23S RRNA methylase [Frankia alni ACN14a]
          Length = 283

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V    NDP N G ++RSA A   D ++ T            +S++G+  H+P I  
Sbjct: 115 RLVAVCVGANDPGNAGTVIRSADAAGADAVVFTGGGVDPFGGKCVRSSAGSHFHLPVIVE 174

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
              T+ +  + + G + +  S  +++ L+  +   ++    A + G E  GL P     A
Sbjct: 175 PTFTEVVTGLRARGCRIVATSGSARRDLDTAVDAGELDGPTAWLFGNEAHGLDPAGLAAA 234

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            +   + + G  ++LN++ A+A+ LY
Sbjct: 235 DAALRVPVYGQAESLNLAVASALCLY 260


>gi|86134820|ref|ZP_01053402.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85821683|gb|EAQ42830.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 177

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/150 (20%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           AV  + ++++LD+V   +NIG++ R++ AF  D I      +   +  + K+A GA E +
Sbjct: 19  AVEKTPIIVILDNVRSLNNIGSVFRTSDAFLIDKIYLCGISATPPNKDIHKTALGATESV 78

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKT 244
            +  + +    ++K+   G + + +       +         +K A+++G E KG++ + 
Sbjct: 79  DWEYVEDTLTLVKKLKKEGIKVLSIEQAENSTMLDTFTPKLAEKYAIVMGNEVKGVQQEV 138

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +     +   G   +LN+S    V ++
Sbjct: 139 INASDFCIEIPQLGTKHSLNISVTTGVVIW 168


>gi|86130258|ref|ZP_01048858.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818933|gb|EAQ40092.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 218

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++RS  +F    +   +  +     +  + A GA + +  
Sbjct: 28  RTTHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEEVNAKR--IDREIAMGAQKWVDV 85

Query: 190 IRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            R ++ +  ++ +   G++ +  S   D+ + LE+    +K A+  G E +GL     E 
Sbjct: 86  ARHNSASSCIKSLREQGYKIVATSPHKDAHR-LEEFDVTEKAAIFFGRETEGLSELVMEE 144

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL-YI 275
           A    ++ M G  ++LN+S +AA+ L YI
Sbjct: 145 ADDFIYIPMVGFTESLNISVSAAITLQYI 173


>gi|229817954|ref|ZP_04448236.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
           20098]
 gi|229784558|gb|EEP20672.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
           20098]
          Length = 290

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 16/148 (10%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--NLTD 197
            V DP N G ++R+A A  CD ++         +  + +S +G+L HIP I +   +  D
Sbjct: 138 QVRDPGNAGTVIRAADAAGCDVVVFVDDCVDMLNPKVIRSTTGSLFHIPVIAMGTNDFFD 197

Query: 198 AL--QKMHSWGFQTIGLSSDSKKPLE----------QEIKNDKIALILGAEGKGLRPKTQ 245
            +  Q +  W     G  +  +KP            +E + D  A++ G E +GL  KT 
Sbjct: 198 WMKEQGLDIWAADVYG--TRKRKPERLPDVLDAMRGEEHRKDGYAVLFGNEARGLNGKTL 255

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E    +  + M G  ++LN++ +AA+ L
Sbjct: 256 EQCQRIVSIPMYGKAESLNLATSAAIIL 283


>gi|298372824|ref|ZP_06982814.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275728|gb|EFI17279.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 182

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 13/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-----LEHIP 188
           L+++LD+V   HNIGA+LR+A AF  + ++     +   +  + KSA GA      E+ P
Sbjct: 26  LVLILDNVRSMHNIGAVLRTADAFCIEKVVLCGITATPPNNEIHKSALGAEFSVRWEYSP 85

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKN-DKIALILGAEGKGLRPKTQ 245
             +I      ++ +   G++ + +  +    PL+   I+   K AL+ G E  G+   T 
Sbjct: 86  EAQIP-----VRTLRDEGYRVLAVEQTQDSMPLDSLHIEGAAKYALVFGNEVSGVEQATI 140

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       +   G   +LNVS A  + ++
Sbjct: 141 DLCDGSVEIPQYGTKHSLNVSVACGIVVW 169


>gi|68491121|ref|XP_710624.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
 gi|46431850|gb|EAK91373.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
          Length = 396

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 78/216 (36%), Gaps = 58/216 (26%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK--- 103
           +++G H V A L    R+I  L    N    + +L  +           VP +  DK   
Sbjct: 156 YVFGTHPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEK-------YGIVPKRLKDKNAL 208

Query: 104 -IVGKEAVHQGLALETAPLLSPTLDAVRNSQ----------------------------- 133
            I+ K  VH G+ L+T  L  P +  V +++                             
Sbjct: 209 NILCKNGVHNGVVLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDDDGEVKVKTKK 268

Query: 134 ---------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                          L + LD + DP N+G+ILRSA  F  D I+     +     V  K
Sbjct: 269 VIRDDDIEQIEELYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANK 328

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           +++GAL+ I   +  +    +  +   G+  I  S 
Sbjct: 329 ASAGALDLIDIYQTGSSLKFIDSVRQNGWHVISTSG 364


>gi|197105361|ref|YP_002130738.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
 gi|196478781|gb|ACG78309.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
          Length = 261

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +   + L  V DP N+G I+R+A A  C G+I         S    ++  G++  +P 
Sbjct: 114 KAADCWVALHRVRDPGNLGTIVRTADAAGCGGVILVGECCDPYSVEAVRATMGSVFAVPL 173

Query: 190 IRISNLTDALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALIL-GAEGKG 239
            R      A  +   W    +G          S+D +KP          ALIL G E +G
Sbjct: 174 SRCGEAEFAAWR-KGWPGSVVGTLLSATHSHASADYRKP----------ALILMGNEQQG 222

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L P+          + M G   +LN+S A  + +Y
Sbjct: 223 LTPEMAALPDLNVKIPMRGRADSLNLSVATGIMIY 257


>gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 253

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 47/266 (17%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +++KK+ +   + R         L G+H V  AL   ++K+ +LL T +    L+ +  +
Sbjct: 12  KEWKKLNTKKGRKRQNK----YILDGLHLVKEALK-VNKKVEELLIT-SKFEHLN-EIEI 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           P    V  +  + + K + +    QG+    ++E   +  P  D        ++LD V D
Sbjct: 65  PDETKVIMISEE-VSKSISETQTPQGIFGIVSIEEEKITYPQKDV----GAWLMLDGVQD 119

Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPS----------ESAVLAKSASGALEHIPY 189
           P NIG ++R+A A    G+I    +   Y+P              V+  + SG + H   
Sbjct: 120 PGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFHIKVINDNLSGWIRHFKD 179

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +++      L + H+  +  +G  +D              AL++G EG G+  +  E  +
Sbjct: 180 MKVPVFGSELNE-HAREYTNVGQHTD-------------FALVMGNEGNGMSKEILEMTS 225

Query: 250 SMAHLHMPGI-IKALNVSNAAAVALY 274
              +L++P    ++LNV+ AA + ++
Sbjct: 226 --INLYIPITNAESLNVAVAAGILMF 249


>gi|295425288|ref|ZP_06817991.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295065064|gb|EFG55969.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 254

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 14/151 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++LD++ DP N+G I+R+A A   +G++    +   Y+P       ++  G+  HI  I 
Sbjct: 113 VLLDNLADPGNVGTIIRTADAAGFNGVVLSPESVDLYNPKTQ----RAMQGSQFHIDII- 167

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           I +LTD + ++ +          D + K L    K  ++ L++G E  G+       + +
Sbjct: 168 IKDLTDVITQLEASDIPVYASMLDKTAKKLPDFEKVAQLGLVIGNEAHGVSDFIANLSDT 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             ++ + G  ++LN + AA + +Y    HFA
Sbjct: 228 KLYIPIFGQAESLNAAVAAGIMIY----HFA 254


>gi|167627889|ref|YP_001678389.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597890|gb|ABZ87888.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 250

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 14/154 (9%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASG 182
           D V     ++VLD + DP NIG ILR+A+A     I+    T   ++P       ++  G
Sbjct: 96  DFVFKDDFILVLDRIQDPGNIGTILRTAIAVGLTEIVLIDGTVDPFNPKA----IRAGMG 151

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGL 240
           A   + +    NL+ A++   +   + I L++  +      +E K     L+ G E  G+
Sbjct: 152 AQFSLKFRYFENLS-AVRNYPTLKERKIWLTTPHEGVSCYSEEFKLSNSVLVFGEEANGI 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +    T +  L     I++LNV+ AA + L+
Sbjct: 211 EDFSVGEKTMIPTLSN---IESLNVAQAATIYLF 241


>gi|46200014|ref|YP_005681.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|46197641|gb|AAS82054.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
          Length = 260

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYI 190
           L++VL  +  P N+GAILR+A     D ++  +    +SP     + ++++GA+  +P  
Sbjct: 110 LVLVLLGLEKPGNLGAILRAADGAGADLVLVAEGVDLFSPQ----VIRNSTGAVFALPVY 165

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++   +A + +       +  + + ++   +      +A +LGAE KGL    +  A  
Sbjct: 166 PVAE-EEAARFLEEQNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQV 224

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G   +LNV+  AA+ LY
Sbjct: 225 RVRIPMRGRADSLNVAVTAALLLY 248


>gi|254502818|ref|ZP_05114969.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438889|gb|EEE45568.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 280

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G I+R+  A    G++     +   +    ++  G+L H+P 
Sbjct: 127 QGTTVWVALDRVRDPGNLGTIIRTVDAVGGSGVMLVGDCTDPFAVEAVRATMGSLFHVPL 186

Query: 190 IRISNLT-DALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            +++     AL K          L  S D + P   + K   + L++G E KGL   T  
Sbjct: 187 AKMTKEEFKALAKDWPGTVAATHLKGSVDYRTP---DYKQPAL-LVMGNEQKGLEDDTAA 242

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
              ++  +   G   +LN++ A  ++LY I +NH 
Sbjct: 243 ACRTLIRIPQVGEADSLNLAVATGISLYEIRRNHL 277


>gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
 gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
          Length = 286

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 16/153 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V DP N+G I+R+A A    G+I     +   S    ++  G++   P  R S  
Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVARAS-- 192

Query: 196 TDALQKMHSWGFQT--------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +++  SW            +  S D +K    +     + +++G E  GL P+    
Sbjct: 193 ---VEEFLSWKKSAHVSVVATHLAGSVDYRK---IDYAGKPVVILMGNEQSGLPPELAGK 246

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A  +A +   G   +LN++ A AV L+  + H 
Sbjct: 247 ADQLARIPQQGRADSLNLAIATAVMLFEARRHL 279


>gi|193214880|ref|YP_001996079.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
           35110]
 gi|193088357|gb|ACF13632.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
           35110]
          Length = 272

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 17/154 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++ D + DP N G ++R+A  F  D I  +       +  + ++++G+L  +P 
Sbjct: 123 KKTALVLIWDGIQDPGNAGTMIRTAAWFGADAIFASHDSVDFFNPKVVRASAGSLFALPL 182

Query: 190 IRISNL---TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP---- 242
           I+ ++L    D L++       T+  SS +   + +  K  K ALI+G+E  G+      
Sbjct: 183 IKSASLGFVVDELKQKR----LTVYASSPAGTSIWEVSKPKKTALIIGSEANGVTSALFL 238

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           KT +  T      +PG   A+   NAA  A  +T
Sbjct: 239 KTDQQIT------IPGNSSAVESLNAAISAGILT 266


>gi|150025852|ref|YP_001296678.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772393|emb|CAL43873.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 217

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 8/151 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R +   + ++ +   HN  A++RS   F    + +  +RY  S   +  + A GA + + 
Sbjct: 29  RTNHFTIAVEDIFQMHNTSAVMRSCEVFGIQELNVIEERYGKS---IDKEIAMGAQKWVD 85

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQET 247
                ++T+ ++ + + G+Q I  +      L ++    K  AL  G E  GL  +  + 
Sbjct: 86  INTFDSVTNCIESLKNKGYQIIATTPHENDCLLEDFDISKPSALFFGTERDGLSEEILKQ 145

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A     + M G  ++LN+S +AA+   I QN
Sbjct: 146 ADGFLKIPMVGFTESLNISVSAAI---IIQN 173


>gi|288927754|ref|ZP_06421601.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330588|gb|EFC69172.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 263

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 19/159 (11%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAK 178
           S T   V  ++L ++LD + DP N+G I+R A  F    ++    T   Y+P    V A 
Sbjct: 96  STTAGNVETNELTLMLDGIQDPGNLGTIIRLADWFGIRHVVCSTDTVDVYNP--KVVQAT 153

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
             S A   + Y  +  L DAL       F   G   D      Q++    I +++G EGK
Sbjct: 154 MGSIARVKVSYTPLETLLDALPP----SFPVYGTLLDGDNIYTQQLCAYGI-IVMGNEGK 208

Query: 239 GLRPKTQETATSMAHLHMPGI------IKALNVSNAAAV 271
           GL    ++  T    L +P         ++LNV+NA A+
Sbjct: 209 GLSQGVRKRVTH--RLLIPSFAIGEERAESLNVANATAI 245


>gi|224373768|ref|YP_002608140.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
 gi|223589277|gb|ACM93013.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
          Length = 209

 Score = 46.6 bits (109), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHI 187
           R + L + +D+V   HN+ AI+R+     CD +   K Y   +  V   +    GA + I
Sbjct: 19  RQNTLRVFMDYVFSSHNLSAIVRT-----CDAVNVGKLYYRHQRKVRLNNDITMGAHKWI 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQE 246
            +  + ++ +  + +   G+Q +    D +    +E+   K  LI LG E  G    + +
Sbjct: 74  FHEYVEDIEEFYKNIKKEGYQVVVTLLDEETVDFREVDYTKPTLIVLGNEVDGASDISIK 133

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            A     + M G+ ++LNVS A AV LY  Q   A
Sbjct: 134 YADKKVIIPMYGMSQSLNVSVANAVILYEAQRQRA 168


>gi|218282592|ref|ZP_03488830.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]
 gi|218216463|gb|EEC90001.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]
          Length = 242

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YS 169
           H G+ L       P L        L  +D V DP+N+G+I R+  A  CD +I  KR +S
Sbjct: 67  HGGVLLIAEEKQIPQLIETYVHGFLCYIDGVEDPYNLGSISRTLYASGCDAMILPKRDWS 126

Query: 170 PSESAVLAKSASGALEHIP 188
            +E  +L K+++GA E +P
Sbjct: 127 FAEQTIL-KASAGAYEKLP 144


>gi|208779154|ref|ZP_03246500.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
 gi|208744954|gb|EDZ91252.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
          Length = 250

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 40/253 (15%)

Query: 39  KSRHTSQPENLFLY----GVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPHPFPV 93
           K  H+SQ     LY    G+     AL   P ++I  +L T+ A        N  +P   
Sbjct: 13  KKLHSSQGRKKSLYYVIEGLRCSQEALKRLPQQQIIAILVTEKA-------DNPNYPLNK 65

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILR 152
           K +  +   + + +    QG+ +       P L+ +  +   ++VLD + DP NIG ILR
Sbjct: 66  KYIITEKDFEALSQTQNPQGVLILAE---KPKLEELSFDDDFILVLDRIQDPGNIGTILR 122

Query: 153 SAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQKMH 203
           +A+A     +I    T   ++P       ++  GA   + +  I+NL +      LQ+  
Sbjct: 123 TAIAVGLKEVILINGTVDPFNPKA----IRAGMGAQFSLKFSYITNLAELKNIAKLQQRK 178

Query: 204 SWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            W   T   G+S  +K     E K     L+ G E  G+   +    T +  L     I+
Sbjct: 179 IW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANGIEDFSVGQKTMIPTLSD---IE 229

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AA + L+
Sbjct: 230 SLNVAQAATIYLF 242


>gi|162448639|ref|YP_001611006.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
           ce 56']
 gi|161159221|emb|CAN90526.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
           ce 56']
          Length = 508

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   + + +D  +DPHN  A+LRS  AF    +   +R   +E  +++ + S   E  
Sbjct: 51  AARLDAVTVAMDAPHDPHNGAAVLRSCDAFGLQRLHIIER---AEQFLVSNTVSRGSERW 107

Query: 188 PYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +R    T+A + ++ + G + +    + +          ++AL+LG E  G+RP    
Sbjct: 108 VDVRTHASTEAAVAELRASGHELVATHPEGELTPRDLSSIPRLALVLGNERDGIRPDLAA 167

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
                  + M G  ++LNVS  AA+ L
Sbjct: 168 ACARAVRVPMRGFAESLNVSVTAAILL 194


>gi|59801230|ref|YP_207942.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|194098554|ref|YP_002001616.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|240115611|ref|ZP_04729673.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260440578|ref|ZP_05794394.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268601289|ref|ZP_06135456.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291043881|ref|ZP_06569597.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399091|ref|ZP_06643256.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|59718125|gb|AAW89530.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|193933844|gb|ACF29668.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|268585420|gb|EEZ50096.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291012344|gb|EFE04333.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610505|gb|EFF39615.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L 
Sbjct: 116 VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLE 175

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L       F T  L  + +  L  E   +  A + G EG G+     + A     + M
Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234

Query: 257 PGIIKALNVSNAAAVALY 274
               ++LNV+ AA + L+
Sbjct: 235 HDATESLNVAMAATICLF 252


>gi|21674078|ref|NP_662143.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647231|gb|AAM72485.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 169

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D+ R+   LM L ++    N+GA+ R+A A   D I+ T   +      + K+A GA E 
Sbjct: 11  DSARHPVTLM-LYNIRSMWNVGAMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQET 69

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P+   ++  +A+  +     +  GL  + +S+        +  +ALI+G E +G+    
Sbjct: 70  VPWRHFADPVEAITVLKRESKKIFGLEIAENSRSYSSLTAGDFPLALIVGNEVEGIGDAL 129

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 +  +   G+  +LNV+ AA VAL+     F K
Sbjct: 130 LSHCDGVIEIPQYGVKHSLNVAVAAGVALFECVRVFRK 167


>gi|325104097|ref|YP_004273751.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
 gi|324972945|gb|ADY51929.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
          Length = 248

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 14/184 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V  +  Q + KI   +   + LAL   P L   +  +   ++ +VLD V DP N+G I+R
Sbjct: 65  VFEITEQELTKISSLQNPQEALALIEIPQLDVNVLEIEK-EINLVLDGVQDPGNLGTIIR 123

Query: 153 SAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +A  F    II +K     Y+P    V A   S A  ++ Y+ +     A Q        
Sbjct: 124 TADWFGFSNIICSKNTVDVYNP--KVVQATMGSLARVNVSYVDLPAYLIAQQ------LP 175

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G   D K    Q+       LILG+EG G+  +          +   G  ++LNV  A
Sbjct: 176 KFGTLLDGKNIYHQDWPEAGF-LILGSEGNGISDEIISLLDGSVTIPKLGQTESLNVGIA 234

Query: 269 AAVA 272
           AA+ 
Sbjct: 235 AAIC 238


>gi|239998937|ref|ZP_04718861.1| putative RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|240080778|ref|ZP_04725321.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|240112855|ref|ZP_04727345.1| putative RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240117904|ref|ZP_04731966.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|240123463|ref|ZP_04736419.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240125708|ref|ZP_04738594.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|254493723|ref|ZP_05106894.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268594782|ref|ZP_06128949.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268596894|ref|ZP_06131061.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268598935|ref|ZP_06133102.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268603614|ref|ZP_06137781.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682090|ref|ZP_06148952.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268684300|ref|ZP_06151162.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|226512763|gb|EEH62108.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548171|gb|EEZ43589.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268550682|gb|EEZ45701.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268583066|gb|EEZ47742.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268587745|gb|EEZ52421.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622374|gb|EEZ54774.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268624584|gb|EEZ56984.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|317164227|gb|ADV07768.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L 
Sbjct: 116 VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLE 175

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L       F T  L  + +  L  E   +  A + G EG G+     + A     + M
Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234

Query: 257 PGIIKALNVSNAAAVALY 274
               ++LNV+ AA + L+
Sbjct: 235 HDATESLNVAMAATICLF 252


>gi|261392545|emb|CAX50100.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
           Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
           8013]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     ++  K  + + S  + ++  GA   +     ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLDIYSQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L       F T  L  + +  L  E   +  A + G EG G+     + A     +
Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQVVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|268318179|ref|YP_003291898.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262335713|gb|ACY49510.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALE 185
           R   ++ V++ + +  N+ A++RSA A    G    K    +Y  SE     ++A GA +
Sbjct: 67  RTYTVVPVVEGLANTGNVSAVMRSAEALGYQGFGIIKGQVQKYKTSE-----RTAQGADK 121

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +         +A+  + + G++ +  + +  +P++        AL+ G E +G+  +  
Sbjct: 122 WLDVWTWPTAAEAVPALKAAGYRIVATALEEAEPIDTFDFTVPTALVFGNEVEGVSRELL 181

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             A +   + + G  ++ N+S AAA+ALY  Q 
Sbjct: 182 AMADARCVIPIVGFTQSFNISVAAAIALYHAQR 214


>gi|240128164|ref|ZP_04740825.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268686558|ref|ZP_06153420.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626842|gb|EEZ59242.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L 
Sbjct: 116 VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLE 175

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L       F T  L  + +  L  E   +  A + G EG G+     + A     + M
Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234

Query: 257 PGIIKALNVSNAAAVALY 274
               ++LNV+ AA + L+
Sbjct: 235 HDATESLNVAMAATICLF 252


>gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197]
 gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
 gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197]
 gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
          Length = 229

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q+ 
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQHQ 164


>gi|305667310|ref|YP_003863597.1| spoU protein [Maribacter sp. HTCC2170]
 gi|88709357|gb|EAR01590.1| spoU protein [Maribacter sp. HTCC2170]
          Length = 216

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKS-ASGALEHI 187
           R   + + ++ V   HN  A++RS   F   D  +   R+       L K+ A GA + +
Sbjct: 29  RTKYVTVAIEDVFQLHNTSAVIRSCEVFGLQDAHVIENRFGKR----LDKNIAMGAQQWV 84

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
              R  +    +  +   G+Q I  +      L  +   DK  AL  G E +GL  +  +
Sbjct: 85  DVKRHEDTESCISHLRDQGYQIIATTPHDDSCLLNDFNLDKKTALFFGTEKEGLSEEVMQ 144

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
            A     + M G  ++LN+S +AA+ L
Sbjct: 145 KADGFLKIPMVGFTESLNISVSAAIIL 171


>gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
 gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
          Length = 229

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVTHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|238882262|gb|EEQ45900.1| hypothetical protein CAWG_04239 [Candida albicans WO-1]
          Length = 470

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 77/216 (35%), Gaps = 52/216 (24%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK----IV 105
           +++G H V A L    R+I  L    N     D D           VP +  DK    I+
Sbjct: 156 YVFGTHPVKAVLMAGKRRILDLYTFNNE----DPDIVKLAMEKYGIVPKRLKDKNALNIL 211

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ-------------------------------- 133
            K  VH G+ L+T  L  P +  V +++                                
Sbjct: 212 CKNGVHNGVVLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDDDGEVKVKTKKVIR 271

Query: 134 ------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                       L + LD + DP N+G+ILRSA  F  D I+     +     V  K+++
Sbjct: 272 DDDIEQIEELYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASA 331

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           GAL+ I   +  +    +  +   G+  I    D +
Sbjct: 332 GALDLIDIYQTGSSLKFIDSVRQNGWHVISTVVDQQ 367


>gi|229552522|ref|ZP_04441247.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539895|ref|YP_003174394.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|229314074|gb|EEN80047.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151571|emb|CAR90543.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 253

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + Q LM LD + DP N+G ++R+A A     +I     + +    + ++  G+  H+  +
Sbjct: 106 SGQFLM-LDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAMQGSQFHVRIV 164

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETAT 249
             + L   ++ +   G    G   + K    + I+ + +  L++G EG G+ P   +   
Sbjct: 165 S-AKLMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGMDPVLLKQTD 223

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +  ++ + G  ++LNV+ AAA+ ++
Sbjct: 224 TNLYIPIRGQAESLNVAVAAAIMMF 248


>gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
 gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
          Length = 175

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L  A L    +D  + +Q   ++++LD +   HNIG++ R++ AF  + I      +   
Sbjct: 4   LANAELERKNIDEFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKI 229
           +  + K+A GA E + +    ++ + + ++     +   +       +  + +   N K 
Sbjct: 64  NKEIHKTALGATETVTWEYAKDVLEVVHQLKQENVKVYSVEQTENAIMLDDFQPETNTKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ALI G E KG+  +    +  +  +   G   +LN+S +A + ++
Sbjct: 124 ALIFGNEVKGVSQEAINLSDGVIEIPQLGSKHSLNISVSAGIVIW 168


>gi|308389284|gb|ADO31604.1| putative RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     ++  K  + + S  + ++  GA   +     ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLDIYSQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L       F T  L  + +  L  E   +  A + G EG G+     + A     +
Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQVVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|220678250|emb|CAX14273.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
           protein 1 (TARBP1) [Danio rerio]
          Length = 580

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S LL+V   ++ P N+G + R+   F    ++       ++    A S S  L  +P +
Sbjct: 423 TSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQFQALSVSSEL-WLPMM 481

Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +  + L+D LQ   S G+  IG+   S  + L+     +K  L+LG E +G+     + 
Sbjct: 482 EVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQL 541

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                 +   G+ ++LNV  +AA+ ++  T+ H
Sbjct: 542 LDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQH 574


>gi|296314260|ref|ZP_06864201.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
           43768]
 gi|296839057|gb|EFH22995.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
           43768]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP N+G +LRSA A     ++  +  +   S  + ++  GA   +     ++L
Sbjct: 115 VVLDSVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYPQADL 174

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L +     F T  L  + +  L  E      A + G EG G+     + A     + 
Sbjct: 175 EIWLARYEDRVFAT-ALREEKQTVLYGEDLCKPTAWVFGNEGAGVGKAVLDRADKCVRIP 233

Query: 256 MPGIIKALNVSNAAAVALY 274
           M    ++LNV+ AA V L+
Sbjct: 234 MHDATESLNVAMAATVCLF 252


>gi|121608425|ref|YP_996232.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121553065|gb|ABM57214.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 274

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 28/259 (10%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALARL 81
           R++   K+++   Q S    +   L+L G H   AAL     PS  +F       A A  
Sbjct: 12  RDNAFVKELRRLAQDSTAYRRQGRLWLEGEHLCRAALARQLRPSIAVFAESFWPQAQAEY 71

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLD-----AVRNSQLL 135
             DA+                 +V  E +  G+ ALE+   +   LD     +++     
Sbjct: 72  AQDAS---------------KIMVLAEPLFAGISALESPARMGFILDLPAPASLQPGAAT 116

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V D  N+G+ILRSA AF    ++  K  +   S  + ++  GA   +  I  +  
Sbjct: 117 VVLDRVQDAGNMGSILRSAAAFGFRQVLALKGSAALWSPKVLRAGMGAHFALNLIEAAGP 176

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + LQ +       +  S  + + L +       A I+G EG+G+ P     A     + 
Sbjct: 177 AE-LQALQ---LPMLVTSPHAGEYLHRATLPWPCAWIMGHEGQGVTPALTAKAALRIRIA 232

Query: 256 MPGIIKALNVSNAAAVALY 274
            PG  ++LNV+ AAA+ L+
Sbjct: 233 QPGGQESLNVAAAAAICLH 251


>gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W]
 gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11]
          Length = 229

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREVDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|194336255|ref|YP_002018049.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308732|gb|ACF43432.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 180

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++L ++    N+G++ RSA A   + II +   +      +AK+A GA + + +   +
Sbjct: 28  LVLMLHNIRSMWNVGSMFRSADAARIEKIILSGYTATPPRKEIAKTALGAQDTVVWEYHA 87

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSM 251
           +  +A+  M   G +  GL  ++  +P       D  I L++G E  GL  +  ++   +
Sbjct: 88  DPLEAVCSMKREGVRICGLEITEGSRPYTAVNAGDFPICLVVGNEVDGLENEILDSCDDV 147

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +   G   +LNV+ AA +AL+
Sbjct: 148 LEIPQYGTKHSLNVAVAAGIALF 170


>gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 177

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++L+ +   +NIG+  R+A AF+ + +      +      + K+A GA E I +    
Sbjct: 26  LIIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHREIHKTALGATETIDWEYRQ 85

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           ++   + ++   G     +    +  L  EI   K+ + AL+ G E  G+     +++  
Sbjct: 86  DINALVAELKEEGIAVCSIEQAEETVLLHEISTLKDQRFALVFGNEVDGVDQSVIDSSNY 145

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +  +   G   +LNVS  A + L+     FAK
Sbjct: 146 IIEIPQFGTKHSLNVSVCAGIVLW----EFAK 173


>gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63]
 gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
 gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
 gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
 gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
          Length = 265

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/145 (20%), Positives = 70/145 (48%), Gaps = 1/145 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  + +++LD + DP N+G I+R+A +   + II  K      +  + +S  G++  +  
Sbjct: 115 KKDKFVLILDRIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGSIFDMNI 174

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  S   + +  + S  F  +    ++    ++     K+AL++G E  G+  +    + 
Sbjct: 175 INASQ-DETVDMLKSLDFNIVSSYLNTDNFYDKIDYGSKVALVIGNEANGINEELVSKSD 233

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + + G  ++LN + ++A+ +Y
Sbjct: 234 ILVKIPIYGKAESLNAAISSAILMY 258


>gi|163788241|ref|ZP_02182687.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159876561|gb|EDP70619.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 167

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +V D++++  NIG++ R A AF  + +I   +   S    + K++    +++ +    
Sbjct: 17  ITLVCDNISNAPNIGSLFRIADAFGIEELIFCGK-DVSLGKRMTKTSRSTEKYVTHKIEE 75

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATS 250
           N+ D + ++ +     I L  + + + L Q   N K  IA+ILG E  G+         +
Sbjct: 76  NIKDVIARLKTKNHFLIALEITGNSQDLSQFTLNTKQPIAVILGDENFGVSDDIINLCDA 135

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           + H++M G   ++NV  A ++ LY
Sbjct: 136 VIHINMYGNNSSMNVVQATSITLY 159


>gi|71650732|ref|XP_814058.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878998|gb|EAN92207.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 409

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 36/151 (23%)

Query: 135 LMVLDHVNDPHNIGAILRSA-------VAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++ LDHV DP N+GAI+RSA       V  SCD        S   +A +A++++G +EH+
Sbjct: 195 VLFLDHVIDPGNVGAIMRSAFFLGVRCVVLSCD--------SAGCTAAMARASAGVMEHM 246

Query: 188 PYIR-----ISNLTDALQKMHSWG-------FQTI-----GLSSDSKKPLEQEIKND--- 227
              R      + L + + +  + G       +  I      +    ++P E+  K     
Sbjct: 247 AVYRSVVPTTTFLENTIAQHRARGDPCSLEMYAAITIPMHAIMRSGRQPKEETEKGGEPM 306

Query: 228 -KIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +  L+LG E KGL P+     +   H+  P
Sbjct: 307 RRRLLLLGNEDKGLPPEVVRLCSHAVHIPSP 337


>gi|261377823|ref|ZP_05982396.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
 gi|269146125|gb|EEZ72543.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP N+G +LRSA A     ++  +  +   S  + ++  GA   +     ++L
Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYSQADL 174

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L       F T  L  + +  L  E      A + G EG G+     E A     + 
Sbjct: 175 EIWLAHYEDRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLERADKCVRIP 233

Query: 256 MPGIIKALNVSNAAAVALY 274
           M    ++LNV+ AA + L+
Sbjct: 234 MNDATESLNVAMAATICLF 252


>gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + + + LD V DP N+G ++R+A A S  G+I     +   S    ++  G++  +P 
Sbjct: 134 KGNDVYIALDRVRDPGNLGTVIRTADAVSAKGVILIGDTTDPYSLETVRATMGSVFSMPL 193

Query: 190 IRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKT 244
            ++S   D L    +W  G   + + +  K  ++       N  + L++G E +GL    
Sbjct: 194 YKVSE-ADFL----NWRKGVSGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSL 248

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +A +   G   +LN++ A  V LY
Sbjct: 249 AGACDKLARIPQAGRADSLNLAIATGVMLY 278


>gi|75907658|ref|YP_321954.1| tRNA/rRNA methyltransferase SpoU [Anabaena variabilis ATCC 29413]
 gi|75701383|gb|ABA21059.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413]
          Length = 260

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 2/148 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++ L+ + DP N+G I+R+A A    G+  ++     ++  + ++++G    +      
Sbjct: 111 VVLALETIQDPGNLGTIIRTAAAAGASGLWLSQDSVDLDNPKVLRASAGQWFRLATAVSE 170

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252
           +L   +Q     G Q +  +  + K    EI   K +LI LG EG GL P     A    
Sbjct: 171 DLKATVQLCQQAGMQVVA-TLPTAKLTYWEIDWHKPSLILLGNEGAGLSPDLAAMADQEV 229

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + +   +++LNV+  +A+ LY  Q   
Sbjct: 230 KIPLSPGVESLNVAITSALMLYEVQRQL 257


>gi|68491148|ref|XP_710610.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
 gi|46431834|gb|EAK91358.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 78/216 (36%), Gaps = 58/216 (26%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDK--- 103
           +++G H V A L    R+I  L    N    + +L  +           +P +  DK   
Sbjct: 156 YVFGTHPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEK-------YGIIPKRLKDKNAL 208

Query: 104 -IVGKEAVHQGLALETAPLLSPTLDAVRNSQ----------------------------- 133
            I+ K  VH G+ L+T  L  P +  V +++                             
Sbjct: 209 NILCKNGVHNGVVLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDDDGEVKVKTKK 268

Query: 134 ---------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                          L + LD + DP N+G+ILRSA  F  D I+     +     V  K
Sbjct: 269 VIRDDDIEQIEELYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANK 328

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           +++GAL+ I   +  +    +  +   G+  I  S 
Sbjct: 329 ASAGALDLIDIYQTGSSLKFIDSVRQNGWHVISTSG 364


>gi|282877999|ref|ZP_06286807.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
 gi|281299834|gb|EFA92195.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
          Length = 168

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ RS  AF  + +      +      + K+A G  + + +   +
Sbjct: 17  LVVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGEDSVDWRYFA 76

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           + T A++ +   G+    +         Q +  D   + A++ G E KG+   T +    
Sbjct: 77  SATQAVEDLRERGYCVYAIEQVVGSTKLQHLSVDRSQRYAVVFGNEVKGVHQDTVDACDG 136

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 137 CLEIPQFGTKHSLNVSVTAGIVVW 160


>gi|302792753|ref|XP_002978142.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
 gi|300154163|gb|EFJ20799.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
          Length = 220

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  +V+ +V   HNIG + RSA AF    +I   +   +     +  + G+  H+ +   
Sbjct: 2   ECYVVVHNVAKRHNIGTLARSATAFGVSEMILVGKKDFN-----SFGSHGSAHHVRFRHF 56

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +L +A   +   G    G+  ++    + +       A +LG EG GL PK  E     
Sbjct: 57  HSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLSPKEMEICDFF 116

Query: 252 AHLHMPGIIKA-LNVSNAAAVALY 274
            ++   G   A LNV+ AA++ L+
Sbjct: 117 TYIPQVGCGTASLNVTVAASIVLH 140


>gi|240014154|ref|ZP_04721067.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|240121716|ref|ZP_04734678.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L 
Sbjct: 116 VLDGVQDPGNVGTVLRSAAAARVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLE 175

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L       F T  L  + +  L  E   +  A + G EG G+     + A     + M
Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234

Query: 257 PGIIKALNVSNAAAVALY 274
               ++LNV+ AA + L+
Sbjct: 235 HDATESLNVAMAATICLF 252


>gi|302337050|ref|YP_003802256.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301634235|gb|ADK79662.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 229

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 5/150 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R   + +VL+ +  PHN  A+LRS   F    + +   R   + S+ +A   SG L+   
Sbjct: 33  RTRYITVVLEDIYQPHNASAVLRSCEGFGIQDVHVIENRNRFTISSGVALGTSGWLDIHR 92

Query: 189 YIR--ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ-EIKNDKIALILGAEGKGLRPKT 244
           Y      N   A+ ++ + G++ +  S  ++   LE  +I   K A + G E +G+  + 
Sbjct: 93  YREEGAGNTLKAVHELKAKGYRIVATSPHAQDINLEDFDISAGKSAFLFGNELEGVSQEA 152

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A     + M G +++ N+S + A+ L+
Sbjct: 153 MALADEFMKIPMRGFVESFNISVSCAIVLH 182


>gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
          Length = 229

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
 gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
          Length = 260

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 61/144 (42%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + ++ + DP N+G ++R+A A   +G++ +      E+  + ++ +G    +P     + 
Sbjct: 112 LAVETLQDPGNLGTMIRTAAAAGAEGVLLSSDSVELENPKVLRATAGQWFRLPLSVAEDF 171

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              LQ     G Q +     ++              +LG EG GL       A     + 
Sbjct: 172 QAELQHYRQQGIQVVATLPQAQSNYWDVDLTCPTLFLLGNEGAGLSASVVALADRQVKIP 231

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           +   +++LNV+ AAA+ LY  Q  
Sbjct: 232 LQPGVESLNVAIAAALLLYEAQRQ 255


>gi|85711929|ref|ZP_01042984.1| rRNA methylase SpoU [Idiomarina baltica OS145]
 gi|85694326|gb|EAQ32269.1| rRNA methylase SpoU [Idiomarina baltica OS145]
          Length = 230

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L +V++ V+  HN+ A++R+A A     +     +  S+  V   +A G+   +
Sbjct: 14  AFRQPDLTVVMEGVHKHHNLSAVVRTADAVGVHEMHAI--WLSSKMRVSGGTALGSQNWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S L+ A++++   G Q +    SD      +       A++LG E  G   +  +
Sbjct: 72  NVHHHSQLSPAVEQIKQQGMQVVVTHLSDQAVDFREIDYTQPTAILLGQEKHGATEEALK 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G++++LNVS A AV LY  Q
Sbjct: 132 IADHHVKIPMVGMVQSLNVSVAGAVMLYEAQ 162


>gi|240016589|ref|ZP_04723129.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA6140]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L 
Sbjct: 116 VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYLQADLE 175

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L       F T  L  + +  L  E   +  A + G EG G+     + A     + M
Sbjct: 176 IWLAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPM 234

Query: 257 PGIIKALNVSNAAAVALY 274
               ++LNV+ AA + L+
Sbjct: 235 HDATESLNVAMAATICLF 252


>gi|239828668|ref|YP_002951292.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
 gi|239808961|gb|ACS26026.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
          Length = 237

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 27/158 (17%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEH 186
           R   + ++ + V+DPHN  A+LR+A AF    +      +P +   L    +     L+ 
Sbjct: 45  RTRYITVLTEAVDDPHNQAAVLRTAEAFGVQDVYVVTGKAPFQPNPLVTRHADKWLTLQQ 104

Query: 187 IPYIRISNLTDALQKMHSWGFQ---------TIGLSS-DSKKPLEQEIKNDKIALILGAE 236
            P     ++   ++++ + G+Q         T+ L   D  +P          AL+ G E
Sbjct: 105 KP-----DIVTTIKELQAKGYQVYASYLGEGTLRLGDIDVSRP---------TALLFGNE 150

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             G+  +    A +   + M G +++ N+S AAA+ALY
Sbjct: 151 HSGVSQEAIRAADATFMIPMYGFVQSFNISVAAALALY 188


>gi|167522701|ref|XP_001745688.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776037|gb|EDQ89659.1| predicted protein [Monosiga brevicollis MX1]
          Length = 549

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 15/147 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+    DPHN+G+I+R+A+AF  D I      +   +A   K+++G   H+   R  + 
Sbjct: 392 LVVVAAQDPHNVGSIVRTALAFGADAICVWDGAAQPLTAATIKASAG---HVFAGRFLSP 448

Query: 196 TDALQKMHS----------W-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           T+ L+   S          W   +    SS S + LE      +  L+LG E +G+ P+ 
Sbjct: 449 TEVLRAARSTASEVAPSTLWTAAEAHAPSSWSHRQLEDVAWPHRRVLVLGHETRGV-PRD 507

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAV 271
            +      H+ +   +++L+V+ AAA+
Sbjct: 508 LQPFCQPVHIAIHPGVESLSVAAAAAI 534


>gi|325266642|ref|ZP_08133319.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982085|gb|EGC17720.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 294

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 13/189 (6%)

Query: 91  FPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            P   V P +  K +GK   +HQ   L T   L P +     S   ++LD V D  N+G 
Sbjct: 103 LPADIVQPVS-GKALGKITQLHQAEDLMTLIALPPPV--APESPDYVLLDRVQDAGNVGT 159

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHIPYIRISNLTDALQKMHSWGF 207
           +LRSA A     I+  +  + + S  + ++  GA  L HI   R+  LT+   +     +
Sbjct: 160 VLRSAAAAGIRQIVLGEGCADAYSPKVLRAGMGAHFLLHIQE-RVC-LTEWCARYPHAVY 217

Query: 208 QTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            T   + D  +P  L Q       A I G EG G+ P+    A     + M G  ++LN+
Sbjct: 218 AT---ALDGNRPALLYQLDLRAPCAWIFGNEGSGVSPELIALAGRSVKIPMQGATESLNI 274

Query: 266 SNAAAVALY 274
           + AA V L+
Sbjct: 275 AQAATVCLF 283


>gi|293605074|ref|ZP_06687466.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
           43553]
 gi|292816477|gb|EFF75566.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
           43553]
          Length = 262

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 6/164 (3%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+A    P  SP + A  +   ++  D + DP N+G +LR+  A     +      + +
Sbjct: 92  QGVAFLVTPP-SPEMPAEVDENCVL-FDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAA 149

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            SA + +S  GA   +      +LT  L ++       +  + D  + L +     + A 
Sbjct: 150 WSAKVLRSGQGAHFALAIHEHIDLTALLPRLR---VPLVATALDGARNLYEGRLPARCAW 206

Query: 232 ILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSNAAAVALY 274
           + G EG+G+ P   + A+    + H    +++LNV  AAA+ L+
Sbjct: 207 VFGHEGQGVDPVLLDAASHKVCIPHDMAAVESLNVGAAAAICLF 250


>gi|227536035|ref|ZP_03966084.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243932|gb|EEI93947.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 177

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD-----GIITTKRYSPSESAVLAKSASGALEHIP 188
           +++VLD+V   HN+G+  R++ AF+ +     GI  T  +   E   L  ++S   EH P
Sbjct: 25  VVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIEKTALGATSSVDWEHAP 84

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245
                +L   L  +   G+Q + +       +  + +   + K A + G E  G+  +  
Sbjct: 85  -----DLISRLNALKDEGYQILAIEQAEGSVMLHQFEPSSDQKYAFVFGNEVHGVDEEIM 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280
           + +     +   G   + N+S    + L  ++ +N F
Sbjct: 140 KISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRF 176


>gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13]
 gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13]
          Length = 243

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 22/162 (13%)

Query: 136 MVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            VL H + P NIG+  R+   + F+   +I  +++   ++  LA  A   L+H      +
Sbjct: 13  FVLSHTSHPGNIGSTARAIKTMGFAQLSLINPEKFPHEDADALASGAKDLLQH------A 66

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------------IKNDKIALILGAEGKGL 240
            +  +L+++ +     IG ++  K+ L QE             +KN+K AL+ G E  GL
Sbjct: 67  QVASSLEEVTADCNVLIGFTA-RKRELTQEHLSIEEIAQKIIELKNNKFALLFGNETSGL 125

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + +  +    +A++       +LN+S A  V  Y  + +F K
Sbjct: 126 KNEEIQHCHYLAYIDANKEYSSLNLSQAVQVTAYELRKNFNK 167


>gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354]
 gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|296230937|ref|XP_002807779.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase
            TARBP1-like [Callithrix jacchus]
          Length = 1626

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P + 
Sbjct: 1467 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQYLSVS-AEQWLPLVE 1525

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    LT  LQ+  + G+  IG+   ++   L Q    +K  L+LG E +G+     +  
Sbjct: 1526 VKPPQLTAYLQQKKTEGYTIIGVEQTARSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1585

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1586 DVCVEIPQQGIIRSLNVHVSGALLIW 1611


>gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. Sakai]
 gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           301]
 gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046]
 gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227]
 gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. W3110]
 gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str.
           8401]
 gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11]
 gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1]
 gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str.
           REL606]
 gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933]
 gi|147866|gb|AAB00161.1| spoU [Escherichia coli]
 gi|290501|gb|AAA62004.1| spoU [Escherichia coli]
 gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301]
 gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T]
 gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046]
 gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227]
 gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401]
 gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli]
 gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli]
 gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli]
 gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli]
 gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli]
 gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1]
 gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017]
 gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC
           796-83]
 gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B]
 gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. G5101]
 gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. 493-89]
 gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. H 2687]
 gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14]
 gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G]
 gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68]
 gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180]
 gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520]
 gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482]
 gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120]
 gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489]
 gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007]
 gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509]
 gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253]
 gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167]
 gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii
           ECD227]
 gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1044]
 gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88]
 gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           2747-71]
 gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6]
 gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272]
 gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|307719082|ref|YP_003874614.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
           6192]
 gi|306532807|gb|ADN02341.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
           6192]
          Length = 249

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 10/150 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186
           R   + + L+++  PHN  A+LRSA A     +   +    ++PS+   +  +   +L  
Sbjct: 35  RTRYVTVALENIYHPHNANAVLRSAEAMGLQDVHIVEDAVPFTPSKGVSMGTARWLSLH- 93

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKNDKIALILGAEGKGLRPKT 244
               R  +   A+ ++   G++ I  +   +  P+++ ++   K A   G E  GL    
Sbjct: 94  ----RYRDPRMAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFFGGELPGLSDAV 149

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E A     + M G +++LN+S  A + L+
Sbjct: 150 LEAADEYLTIPMYGFVESLNISVTAGIVLH 179


>gi|262197612|ref|YP_003268821.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
 gi|262080959|gb|ACY16928.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
          Length = 231

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 5/168 (2%)

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           EA+   +  E A  +   L A R S L + +++++DPHN  A++RS  A    G+ +   
Sbjct: 23  EALRPFVTDERAARIDSVLSA-RLSGLTVAIENLHDPHNGAAVVRSVEAV---GLTSLHV 78

Query: 168 YSPSESAVLAKS-ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             P E    + + A G+ + I  +R    T   + +   GF+      D++  ++    +
Sbjct: 79  AEPIERFQFSPAVAIGSEKWIRVLRHQGFTACARILRGAGFRMYAACPDAEMSMDDIDVS 138

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A++ G E +GL  +  +   +   + M G  ++LN+S + AV+++
Sbjct: 139 QPSAVVFGNEHEGLSRRAIDACDAKVAIPMHGFTQSLNLSVSVAVSIF 186


>gi|332289500|ref|YP_004420352.1| putative methyltransferase [Gallibacterium anatis UMN179]
 gi|330432396|gb|AEC17455.1| putative methyltransferase [Gallibacterium anatis UMN179]
          Length = 357

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 111 HQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           H G+ L   +  PL L   L+  +    ++VLD + +  NIG +L++   +    ++T K
Sbjct: 189 HGGICLLVKKRPPLMLKSYLETPKKRDCIVVLDGIGNAANIGGVLKTLAFYGVQNVVTDK 248

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK 225
                +S    + A G +E++    +++ T AL  +   G+Q I  S S     L +   
Sbjct: 249 -IDAVQSPAAMRVAEGGIEYLRLFEVAHPTLALDLLKQAGYQLIRASLSKQAIALNKLEL 307

Query: 226 NDKIALILGAEG-KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            DK+A++L     K L P+    A S  +    G    LNV+  A V L
Sbjct: 308 QDKVAIVLSENTIKDLDPEVTNVALSTTNPLATG----LNVAVTAGVLL 352


>gi|326336260|ref|ZP_08202431.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691434|gb|EGD33402.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 221

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEH 186
           A R     + ++ +   HN  A++R+   F      I  K+Y      + +K A GA + 
Sbjct: 28  AQRTQYFTVAIEDIFQMHNTSAVVRTCEVFGVQTTHIIEKKYGKR---LDSKIAMGAEKW 84

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   R SN    ++++   G++ +  + + S  PLE    + K A   G E  GL  +  
Sbjct: 85  VTIKRYSNTQSCIEELKLQGYRIVATVPAPSAIPLEHFNIDAKSAFFFGTERDGLSQEVI 144

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A     + M G  ++LN+S + A+ L    N   K
Sbjct: 145 SQADEFLTIPMVGFTESLNISVSVAIILQYLTNKLRK 181


>gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G++++LNVS A+A+ LY  Q
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQ 162


>gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
 gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G++++LNVS A+A+ LY  Q
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQ 162


>gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
 gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86]
 gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
 gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 30/175 (17%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ R+  AF  + +          +A + K+A G  + + +    
Sbjct: 25  LIVVLDDVRSLYNVGSVFRTCDAFRVEAVYLCGITGTPPNAEIHKTALGGEDSVDWRYFE 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------------------------ 229
              DA+Q++H  G+    +          E+ N K                         
Sbjct: 85  KTEDAVQELHDRGYFVYSIEQVEGSTKLFELGNSKFTIHNSKLADAVDTAIENRQSESIF 144

Query: 230 --ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A+I G E KG++    + +     +   G   +LNVS  A + ++     FAK
Sbjct: 145 PCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTAGIVVW----EFAK 195


>gi|194206115|ref|XP_001916608.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Equus caballus]
          Length = 1468

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++    +   +      S S A + +P + 
Sbjct: 1309 SRLIVVASLIDKPTNLGGLCRTCEVFGALVLVVGSLHCVKDKQFQHLSVS-AEQWLPLVE 1367

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 1368 VKPPQLIDYLQQKKAEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1427

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1428 DVCVEIPQQGIIRSLNVHVSGALLIW 1453


>gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
 gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
          Length = 178

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+++LD++   +NIG++ R++ AF    I      +      + K+A GA + + +  + 
Sbjct: 26  LILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALGATQTVDWAYVE 85

Query: 194 NLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           N  + ++ +   G + + +     S S K      +N   AL+LG E KG++ +  + + 
Sbjct: 86  NTLEVVKDLQQQGVKVMSIEQAEDSISLKDFNPR-QNQLYALVLGHEVKGVQQEVVDQSD 144

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  +   G   +LN+S    + ++
Sbjct: 145 GVLEIPQLGTKHSLNISVTTGICVW 169


>gi|238022623|ref|ZP_04603049.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
 gi|237866063|gb|EEP67197.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
          Length = 178

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V D  N+G +LRSA A     ++     + + S  + ++  GA   +      N
Sbjct: 31  CIVLDAVQDAGNVGTVLRSAAAAGIRHVVLGAGCADAYSPKVLRAGMGAHFALTLHERVN 90

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L D L         T     ++    E +++    A I G EG G+ P     A +   +
Sbjct: 91  LRDWLAGYPHRTLATALTEHNNFSLYELDLRPPS-AWIFGNEGSGVSPDILAAADATVKI 149

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G +++LN++ AA + L+
Sbjct: 150 PMQGAVESLNIAQAATICLF 169


>gi|161761287|ref|YP_156756.2| tRNA guanosine-2'-O-methyltransferase [Idiomarina loihiensis L2TR]
          Length = 226

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 9/152 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+++V+  HN+ A++RSA A    G+        ++ A L  S   AL    +
Sbjct: 16  RQPDLTVVMENVHKNHNLSAVVRSADAI---GVHEMHAIWLTKKARL--SGGTALGSQNW 70

Query: 190 IRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           ++I N   + +AL+     G Q +           +E+   K  A++LG E  G+  +  
Sbjct: 71  VKIHNHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTDEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + A     + M G++++LNVS A AV LY  Q
Sbjct: 131 DIADYHVMIPMVGMVQSLNVSVAGAVMLYEAQ 162


>gi|56180485|gb|AAV83207.1| rRNA methylase SpoU [Idiomarina loihiensis L2TR]
          Length = 215

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 15/155 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD---GIITTKRYSPSESAVLAKSASGALEH 186
           R   L +V+++V+  HN+ A++RSA A        I  TK+   S    L          
Sbjct: 5   RQPDLTVVMENVHKNHNLSAVVRSADAIGVHEMHAIWLTKKARLSGGTALGSQ------- 57

Query: 187 IPYIRISN---LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRP 242
             +++I N   + +AL+     G Q +           +E+   K  A++LG E  G+  
Sbjct: 58  -NWVKIHNHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTD 116

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + A     + M G++++LNVS A AV LY  Q
Sbjct: 117 EALDIADYHVMIPMVGMVQSLNVSVAGAVMLYEAQ 151


>gi|89256424|ref|YP_513786.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314861|ref|YP_763584.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502516|ref|YP_001428581.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010704|ref|ZP_02275635.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367761|ref|ZP_04983782.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           257]
 gi|89144255|emb|CAJ79529.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129760|gb|ABI82947.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253572|gb|EBA52666.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           257]
 gi|156253119|gb|ABU61625.1| rRNA methyltransferase, TrmH family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 24/155 (15%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +   ++VLD + DP NIG ILR+A+A     +I    T   ++P   A++A    GA   
Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNP--KAIMA--GMGAQFS 156

Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + +  I+NL +      LQ+   W   T   G+S  +K     E K     L+ G E  G
Sbjct: 157 LKFGYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +    T +  L     I++LNV+ AA + L+
Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242


>gi|269925979|ref|YP_003322602.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789639|gb|ACZ41780.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 266

 Score = 45.8 bits (107), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALE 185
           R    L+ L  V DP NIG+ILR+A A     +I    +   Y P+      ++ +GA  
Sbjct: 114 REGLCLLALKAVQDPGNIGSILRTADAVGVRYVILLGDSVDPYDPNS----VRAGAGATF 169

Query: 186 HIPYIRISNLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLR 241
            +  I+ S      +++  W    Q   + +    PL     N      L++G+E +GL 
Sbjct: 170 TVKLIKTS-----FERLLDWKNIHQIPVIGAVGGAPLNYSRVNYPYPCILLMGSERQGLD 224

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + Q +   +  + M G + +LN++ A +V LY
Sbjct: 225 LREQSSCDMLVSVPMVGKVDSLNLAVATSVILY 257


>gi|257056552|ref|YP_003134384.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256586424|gb|ACU97557.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 257

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 13/184 (7%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +TV PQ I  +     V    AL   P            +L+ VL ++ DP N G +LR 
Sbjct: 80  ETVSPQGIVAVCDTVTVDLSAALTGRP------------RLVAVLVNIADPGNAGTVLRV 127

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   D +I         +    ++++G+L H+P +   ++   L    + G  T+   
Sbjct: 128 ADAAGADAVIFAGSCVDVHNGKCVRASTGSLFHLPVVAEPDVHRVLDACVAAGLTTVAAH 187

Query: 214 SDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             ++  L    + D   A + G E  GL       A     + + G  ++LN++ AAAV 
Sbjct: 188 GYAEADLTTAEQLDGPTAWLFGNEAHGLPEDVLARAEHAVRVPLYGKAESLNLATAAAVC 247

Query: 273 LYIT 276
           LY T
Sbjct: 248 LYTT 251


>gi|145219563|ref|YP_001130272.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205727|gb|ABP36770.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
           265]
          Length = 178

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 2/143 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++L ++    N+G++ RSA A   + II +   +      + K+A GA   +P+    
Sbjct: 26  VILMLHNIRSMWNVGSMFRSADAAGIEKIILSGYTATPPRKEITKTALGADASMPWEYTD 85

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSM 251
           N    L+ +   G +  GL       L  E+K     + L++G E +G+          +
Sbjct: 86  NPQQTLRDLKKSGVRICGLEIAEGSRLYTEMKAQDFPVCLLVGNEVQGIEDNLLAQCDLV 145

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +   GI  +LNVS AA V L+
Sbjct: 146 LEIPQFGIKHSLNVSVAAGVVLF 168


>gi|290953872|ref|ZP_06558493.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312775|ref|ZP_06803512.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 24/155 (15%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +   ++VLD + DP NIG ILR+A+A     +I    T   ++P   A++A    GA   
Sbjct: 51  DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNP--KAIMA--GMGAQFS 106

Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + +  I+NL +      LQ+   W   T   G+S  +K     E K     L+ G E  G
Sbjct: 107 LKFGYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 160

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +    T +  L     I++LNV+ AA + L+
Sbjct: 161 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 192


>gi|218681117|ref|ZP_03529014.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium etli CIAT 894]
          Length = 347

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LDA+    L++V   +++  N G++ R+A AF  D ++  +           + + G++ 
Sbjct: 119 LDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSVGSVL 178

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +PY R     D L  +   GF    LS   +  +     + ++AL++G EG+GL P+  
Sbjct: 179 SVPYRRGGKALDVLLALAERGFAIWTLSPHGETDIRAIPASARMALVVGTEGEGL-PEAL 237

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 A +     + +LN + A  +A   
Sbjct: 238 LARFQSARIPQSEELDSLNAATATGIAFVF 267


>gi|271502622|ref|YP_003335648.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
 gi|270346177|gb|ACZ78942.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
          Length = 230

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +     +  S    L  +A+G+   +  
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTSRMKTLVSTAAGSNSWVQV 73

Query: 190 IRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                + DA + + + G Q +   LS+D+    + +       ++LG E  G+  +    
Sbjct: 74  KTHRTIQDAARHLKTQGMQILATNLSADAVDFRDVDYTR-PTCILLGQEKTGISGEALAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 133 ADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536]
 gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026]
 gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
 gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
 gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026]
 gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042]
 gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|199597200|ref|ZP_03210632.1| rRNA methylase [Lactobacillus rhamnosus HN001]
 gi|199592004|gb|EDZ00079.1| rRNA methylase [Lactobacillus rhamnosus HN001]
          Length = 253

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + DP N+G ++R+A A     +I     + +    + ++  G+  H+  +  + 
Sbjct: 109 FLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAMQGSQFHVRIVS-AK 167

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253
           L   ++ +   G    G   + K    + I+ + +  L++G EG G+ P   +   +  +
Sbjct: 168 LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGMDPVLLKQTDTNLY 227

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G  ++LNV+ AAA+ ++
Sbjct: 228 IPIRGQAESLNVAVAAAIMMF 248


>gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989]
 gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989]
 gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073]
 gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89]
 gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1]
 gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88]
 gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a]
 gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B]
 gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736]
 gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
 gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073]
 gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89]
 gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1]
 gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
 gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a]
 gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82]
 gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034]
 gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU
           83972]
 gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146]
 gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252]
 gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263]
 gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 178

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++LD+V   +NIG++ RSA AF    I      +      + K+A GA + + +  + 
Sbjct: 27  IIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTALGATDTVTWEYVE 86

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           N    ++K+ + G +   +       +  +    K+   A++ G E KG++ +    + +
Sbjct: 87  NTVSLVKKLKAEGIKVYAIEQAEGATMLNDFVPEKHQTTAVVFGNEVKGVQQEVVSASDA 146

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G   +LN+S +  V L+
Sbjct: 147 VIEIPQLGSKHSLNISVSTGVVLW 170


>gi|308176903|ref|YP_003916309.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744366|emb|CBT75338.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 30/179 (16%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAV 175
           P LS  LD     +L+ VL  + DP N G ILR+A A   D +I TK     Y+P     
Sbjct: 113 PQLSEVLDT--KPKLIAVLCRIQDPGNAGTILRAADAAGADAVILTKGSVDIYNPKA--- 167

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--------------------D 215
             +S  G+L H+P +        +    + G Q +                         
Sbjct: 168 -VRSTVGSLFHLPVLNNVEFDHLIAAAKTTGSQVLAADGYAAHNLDTLQDAAVLRANQPG 226

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ P  Q +       + G EG+GL    ++ A     + + G+ ++LNV  A+ V LY
Sbjct: 227 TEAPEGQPVLEAPTLWLFGNEGQGLDEHEKQAADYRVAVPLYGVAESLNVGTASTVCLY 285


>gi|332520270|ref|ZP_08396732.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043623|gb|EGI79818.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 166

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + ++ ++V +  NIG++ R+A AF  + II      P     + K++    + I Y    
Sbjct: 17  ITIICENVTNAPNIGSLFRTADAFGVEKIIFCGSKIPLGRK-MTKTSRTTEKFIKYQERE 75

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDK-IALILGAEGKGLRPKTQETATS 250
            + + + ++    +  + L  +D+ KP+    +   K IA+++G E  G+     +   +
Sbjct: 76  TVEEVIIELKKSNYSILALEITDNSKPIHTFNVPTKKPIAIVIGDENFGISNTALKQTDA 135

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           + H+ M G   ++NV  A  VALY
Sbjct: 136 IIHIDMFGQNSSMNVVQATTVALY 159


>gi|307069598|ref|YP_003878075.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
           Zinderia insecticola CARI]
 gi|306482858|gb|ADM89729.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
           Zinderia insecticola CARI]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%)

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ +R++ A + D II +K+     + ++ K++ GA    PYI++ ++   ++ +    F
Sbjct: 107 GSCIRTSNALNIDLIILSKKCINKNNKIILKTSLGANLITPYIKVKSIKKIIKYLKKKNF 166

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + IG    SK  L        I LI+G+E  G+    ++    +  + M G I  LNVS 
Sbjct: 167 KIIGTWEKSKLNLFNFKFPKLIVLIMGSEKNGISKTIKKMCDFIISIPMLGKINNLNVSV 226

Query: 268 AAAVALY 274
           A  + LY
Sbjct: 227 ATGIFLY 233


>gi|294789319|ref|ZP_06754557.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
           29453]
 gi|294482744|gb|EFG30433.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
           29453]
          Length = 264

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 7/143 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL+++ +  NIG ILRSA A     I+ +K  +   S  + ++A GA  H   ++I   
Sbjct: 115 VVLENIQNSGNIGTILRSAAAAGVAQIVLSKGCADVWSPKVLRAAMGA--HF-LLKIHER 171

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDK-IALILGAEGKGLRPKTQETATSM 251
            D L    S+    +  +   K      ++++   K +A + G EG G+       A + 
Sbjct: 172 VDLLDWRESFSGDVLATALTEKNNFSLYDKQLDLTKPVAWVFGNEGSGVSADMLAQANAT 231

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M G  ++LNV+ AA + L+
Sbjct: 232 VKIPMIGATESLNVAMAATICLF 254


>gi|167771637|ref|ZP_02443690.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
           17241]
 gi|167666277|gb|EDS10407.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
           17241]
          Length = 264

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 19/149 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIR 191
           ++L  + DP N+G ILR+A AF  DG+I +      Y+P    VL  S  G       + 
Sbjct: 121 LLLSSLQDPGNVGTILRTAAAFGTDGVILSADCPDLYAPK---VLRASMGGVFRARACVS 177

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRPKTQ 245
             +L+ ++  + + G         +  P E  +    I      A+++G EG G+ P+  
Sbjct: 178 -DDLSASIAALRAAGVPVW-----AAMPAEGSVSLRDISLHGGGAVVVGNEGGGIAPELA 231

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   + M    ++LN + AA V L+
Sbjct: 232 ALCDGALTIPMEPGCESLNAAMAAGVILW 260


>gi|258508716|ref|YP_003171467.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148643|emb|CAR87616.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|259650023|dbj|BAI42185.1| rRNA methylase [Lactobacillus rhamnosus GG]
          Length = 253

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + DP N+G ++R+A A     +I     + +    + ++  G+  H+  +  + 
Sbjct: 109 FLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAMQGSQFHVRIVS-AK 167

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253
           L   ++ +   G    G   + K    + I+ + +  L++G EG G+ P   +   +  +
Sbjct: 168 LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNGMDPVLLKQTDTNLY 227

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G  ++LNV+ AAA+ ++
Sbjct: 228 IPIRGQAESLNVAVAAAIMMF 248


>gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3]
 gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1]
 gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3]
 gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2]
          Length = 218

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 61  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 121 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 153


>gi|55980244|ref|YP_143541.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
 gi|55771657|dbj|BAD70098.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
          Length = 260

 Score = 45.8 bits (107), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 8/144 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYI 190
           L++VL  +  P N+GAILR+A     D ++  +    +SP     + ++++GA+  +P  
Sbjct: 110 LVLVLLGLEKPGNLGAILRAADGAGADLVLVAEGVDLFSPQ----VIRNSTGAVFALPVY 165

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++   +A + +       +  + + ++   +      +A +LGAE KGL    +  A  
Sbjct: 166 PVAE-GEAARFLEEHNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQV 224

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G   +LNV+  AA+ LY
Sbjct: 225 RVRIPMRGRADSLNVAVTAALLLY 248


>gi|315608080|ref|ZP_07883073.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315250549|gb|EFU30545.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 276

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSA 180
           T  A  +S L++ LD V DP N+G I+R A  F    I+    T   Y+P    V A   
Sbjct: 112 TASAAWDSSLILALDGVQDPGNLGTIIRIADWFGITDIVCSEDTADAYNP--KTVQATMG 169

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           S A   I Y  +S   ++L           G   D     EQ + +  + +I+G EGKG+
Sbjct: 170 SIARTKIVYTDLSAYLESLPNETP----VYGTMLDGTDIYEQSLTHHGV-IIMGNEGKGI 224

Query: 241 RPKTQETATSMAH-LHMPGIIK------ALNVSNAAAV 271
              ++E    + H L +PG  K      +LNV+ A A+
Sbjct: 225 ---SKEITRHINHRLFIPGYPKDRPSAESLNVAIATAI 259


>gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39]
 gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|157864216|ref|XP_001680820.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124112|emb|CAJ02095.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 545

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ L+H+ DP NIG ILR+A  F  D +I +++ + S +A ++++++G LEH+   + S 
Sbjct: 253 VLFLEHIVDPANIGGILRTAFFFGVDHVILSRQCA-SCTAAVSRTSTGFLEHLRVYQAST 311

Query: 195 LTDALQK 201
            + A  +
Sbjct: 312 SSTAFLR 318


>gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1]
 gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 61  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 121 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 153


>gi|319793968|ref|YP_004155608.1| tRNA/rRNA methyltransferase (spou) [Variovorax paradoxus EPS]
 gi|315596431|gb|ADU37497.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus EPS]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 108/259 (41%), Gaps = 24/259 (9%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDW 83
           R++   K ++   Q      +   ++L G H   AAL    +    + A      A  +W
Sbjct: 13  RDNPLLKDLRKLAQDPGAYRKLGRIWLEGDHLCRAALARGVKPAIAVFAESFWPTAPAEW 72

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-----MVL 138
            A+      +KTV       +V  + +     LE+   +   LD     +L+     +VL
Sbjct: 73  GAS-----AIKTV-------VVADDLLRGVSGLESPAPMGFVLDQPVRPELIPDAPSVVL 120

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL-TD 197
           D + D  N G+ILRSA AF    +I  K  +   +  + ++  GA  H     I  +  D
Sbjct: 121 DRLQDAGNAGSILRSAAAFGFTQVIALKGTAALWAPKVLRAGMGA--HFGLRLIEGVEAD 178

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           AL  +       +  SS   + L Q       A ++G EG+G+    +  AT    +  P
Sbjct: 179 ALDALK---IPLVATSSHRGEWLHQARLPHPCAWLMGHEGQGVSAALEARATHHIRIAQP 235

Query: 258 GIIKALNVSNAAAVALYIT 276
           G  ++LNV+ AAA+ L+ +
Sbjct: 236 GGEESLNVAAAAAICLHAS 254


>gi|206560438|ref|YP_002231202.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
 gi|198036479|emb|CAR52376.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
          Length = 260

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R ++  +VLD V D  N+G+ILRSA A     +      + + S+ + +S  GA  H   
Sbjct: 110 RVTETSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGA--HF-L 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + I    DA +             S   + +     +  +A + G EG G+     + AT
Sbjct: 167 LSIHEDVDAGELSGRLAVPIALTDSHGAQAVYDCDLSAPVAWVFGNEGAGVSAFWCDAAT 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               +  PG +++LNV+ AAAV L+
Sbjct: 227 HRVTIPQPGGMESLNVAAAAAVCLF 251


>gi|241202807|ref|YP_002973903.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856697|gb|ACS54364.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 12/156 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + +  + LD V DP N+G I+R+A A    GII     +   S    ++  G++  +P  
Sbjct: 130 DGETWVALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPVA 189

Query: 191 RISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           R +      ++  +W  ++ G+S      + +      + +   + L++G E  GL  + 
Sbjct: 190 RATP-----EEFIAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQL 243

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 244 AREADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|169629410|ref|YP_001703059.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977]
 gi|169241377|emb|CAM62405.1| Possible tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 10/233 (4%)

Query: 48  NLFLY-GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LFL  G + V AAL   S  + ++ AT  A+ R     +L    PV+ V  +   K + 
Sbjct: 17  GLFLAEGPNLVEAALR--SGAVERIFATDAAIERF---VDLLAEAPVRRVTERAA-KALS 70

Query: 107 KEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                 GL  +   ++S  +    R+ + ++V   +++P N G ++R A A   D ++  
Sbjct: 71  DTVTPVGLVAQCRTVVSTWSQVTARSPRFVIVAVDISEPGNAGTLIRVADAMGADAVVLA 130

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-- 223
                  +    ++++G++ +IP +   ++      +   G   +  + D    L++   
Sbjct: 131 GNSVDPFNGKSLRASAGSIFNIPVVPEGDVGAIAADLAQTGVALLATTLDGDLSLDEADA 190

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     A   G E  GL   T   AT   ++ M G  ++LN+++AA++ LY T
Sbjct: 191 VLAGPCAWFFGNEAHGLDGATAALATHRINIPMRGGAESLNLASAASICLYAT 243


>gi|134296013|ref|YP_001119748.1| tRNA/rRNA methyltransferase SpoU [Burkholderia vietnamiensis G4]
 gi|134139170|gb|ABO54913.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia vietnamiensis G4]
          Length = 260

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 47/271 (17%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW 83
           R++  YK++++    +    +  +  L G H   A L+  +  I +L +AT+ ALA  + 
Sbjct: 7   RDNPLYKRLKALAGSTAQQRRGGHALLEGFHLAGAYLDTGA--IPELCVATEGALAHAEA 64

Query: 84  DA-----NLPHPFPVKTVPPQTIDKIVGKEA-VHQGLAL------ETAPLLSPTLDAVRN 131
            A     + P    V T+P    D + G+ + V  G+ L         PL +      R 
Sbjct: 65  QAIVARIDAPR---VVTLP----DALFGQLSNVVSGVGLLLLVERPAQPLPA------RV 111

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +   +VLD V D  N+G+ILRSA A     +      + + S+ + +S  GA   +  I 
Sbjct: 112 TDTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGA-HFLLSIH 170

Query: 192 ISNLTDALQK--------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                DAL +          S G Q +    D   P         +A + G EG G+   
Sbjct: 171 EDVEPDALAERLDVPVALTDSHGAQAV-YDCDLSGP---------VAWVFGNEGAGVSAF 220

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++ AT    +  PG +++LNV+ AAAV L+
Sbjct: 221 WRDAATHRVTIPQPGGMESLNVAAAAAVCLF 251


>gi|311105998|ref|YP_003978851.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8]
 gi|310760687|gb|ADP16136.1| SpoU rRNA methylase family protein 1 [Achromobacter xylosoxidans
           A8]
          Length = 262

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+A +  P +    DAV  + +L   D + DP N+G +LR+  A     +      + +
Sbjct: 92  QGVAFQVTPPVLDLPDAVDENCVL--FDRIQDPGNVGTLLRTCAAAGVKRVFLATGTAAA 149

Query: 172 ESAVLAKSASG---ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
            S  + +S  G   AL    ++ ++ L   LQ         +  + D  + L + +   +
Sbjct: 150 WSPKVLRSGQGAHFALAIHEHVDLAALLPRLQ------IPLVATALDGARDLYEGVLPQR 203

Query: 229 IALILGAEGKGLRPKTQETATSMAHL-HMPGIIKALNVSNAAAVALY 274
            A + G EG+G+  +    A     + H    +++LNV  AAA+ L+
Sbjct: 204 CAWVFGHEGQGVAAELLAAARLKVRIPHDMAAVESLNVGAAAAICLF 250


>gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 118/266 (44%), Gaps = 47/266 (17%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +++KK+ +  +K R   +     L G+H V  AL   ++K+ +LL T +    L+ +  +
Sbjct: 12  KEWKKLNT--KKGR--KKQNKYILDGLHLVKEALK-ANKKVEELLIT-SKFEHLN-EIEI 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           P    V  +  + + K + +    QG+    ++E   +  P  D        ++LD V D
Sbjct: 65  PDETKVIMISKE-VSKSISETQTPQGIFGIVSIEEEKITYPQKDV----GAWLMLDGVQD 119

Query: 144 PHNIGAILRSAVAFSCDGII----TTKRYSPS----------ESAVLAKSASGALEHIPY 189
           P NIG ++R+A A    G+I    +   Y+P              V+  + SG + H   
Sbjct: 120 PGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVINDNLSGWIRHFKD 179

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +++      L + H+  +  +G  +D              AL++G EG G+  +  E  +
Sbjct: 180 MKVPVFGSELNE-HAREYTNVGQHTD-------------FALVMGNEGNGISKEILEMTS 225

Query: 250 SMAHLHMPGI-IKALNVSNAAAVALY 274
              +L++P    ++LNV+ AA + ++
Sbjct: 226 --INLYIPITNAESLNVAVAAGILMF 249


>gi|330444231|ref|YP_004377217.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
 gi|328807341|gb|AEB41514.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
          Length = 266

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 11/144 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++++ V  P N+GA+LR+      DG+I        Y+P+    + +S+ G +  +P + 
Sbjct: 119 LIIEQVEKPGNVGALLRTGDGVGVDGVILCDPIVDLYNPN----VIRSSLGTVFTLP-VL 173

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATS 250
            ++L + LQ +    ++    S  +KK   +E      A++ G+E  GL +P   E    
Sbjct: 174 CASLPEVLQLIRKESWEVYVTSPRAKKLYFEETFLAPTAIVFGSEKDGLMQPWFHERFKE 233

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  L M G   +LN+S + A   Y
Sbjct: 234 IT-LPMRGKADSLNLSTSVAAIAY 256


>gi|325204176|gb|ADY99629.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240355]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLDRGCADAWSPKVLRAGMGAHFLSGIYPQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L +     F T  L  + +  L  E   +  A + G EG G+     + A     +
Sbjct: 174 LEIWLARYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|255009330|ref|ZP_05281456.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313147083|ref|ZP_07809276.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135850|gb|EFR53210.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 21/190 (11%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V  V P+ + +    ++  Q LAL   P      + +RNS L + LD + DP N+G I+R
Sbjct: 65  VIEVGPEDLSRASLLKSPQQVLALFEQPKYEIDTEVIRNS-LCLALDDIQDPGNLGTIIR 123

Query: 153 SAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            A  F  + I     T   ++P   A+ A     A   + YI +  L   L  +  +   
Sbjct: 124 LADWFGIEHIFCSPNTVDVFNP--KAIQATMGGIARVKVHYIALPELIHVLGNVPVY--- 178

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKA 262
             G   D K   EQ +  + I +++G EG G+  + ++       L++P         ++
Sbjct: 179 --GTFLDGKNMYEQPLSKNGI-IVMGNEGNGIGAEVEKLVNR--KLYIPNYPQERETSES 233

Query: 263 LNVSNAAAVA 272
           LNV+ A A+ 
Sbjct: 234 LNVAIATAIV 243


>gi|258654263|ref|YP_003203419.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258557488|gb|ACV80430.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 271

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 80/168 (47%), Gaps = 5/168 (2%)

Query: 112 QGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           QGL +  A  ++   D +  S +L+ VL   +DP N G ++R A A   DG+I     + 
Sbjct: 94  QGLVVRCALPMTSVADLLAGSPKLVAVLVQTSDPGNTGTVIRLADAAGADGVIVAGEAAD 153

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKN 226
             +A   ++++G++ H+P +   +    + ++ + G   +  +  +   L     + I +
Sbjct: 154 PWNAKAIRASAGSVFHLPVVPARDPAALIGELTAAGLSVLASTGQADVELGSAQAEGILD 213

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A + G+E  GL  +    A     + + G  ++LN++ AAAV LY
Sbjct: 214 LPTAWLFGSEAHGLPAEIIGRADERIRIPIYGRAESLNLAAAAAVCLY 261


>gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 117/253 (46%), Gaps = 21/253 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +++KK+ +  +K R   +     L G+H V  AL   ++K+ +LL T +    L+ +  +
Sbjct: 12  KEWKKLNT--KKGR--KKQNKYILDGLHLVKEALK-ANKKVEELLIT-SKFEHLN-EIEI 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           P    V  +  + + K + +    QG+    ++E   +  P  D        ++LD V D
Sbjct: 65  PDETKVIMISEE-VSKSISETQTPQGIFGIVSIEEEKITYPQKDV----GAWLMLDGVQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIG ++R+A A    G+I  +  +   +  + ++  G+  HI  I   NL+  ++   
Sbjct: 120 PGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVIN-DNLSGWIRHFK 178

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IK 261
                  G   ++  +      ++   AL++G EG G+  +  E  +   +L++P    +
Sbjct: 179 DMKVPVFGSELNEHAREYTNGGQHTDFALVMGNEGNGMSKEILEMTS--INLYIPITNAE 236

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AA + ++
Sbjct: 237 SLNVAVAAGILMF 249


>gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863]
 gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 61  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153


>gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
 gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 61  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 153


>gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
 gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 61  QVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 121 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 153


>gi|325270980|ref|ZP_08137567.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324986777|gb|EGC18773.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 242

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           ET P  S       +++L++ LD V DP N+G I+R A  F  + I  ++  +   +  +
Sbjct: 77  ETPPAYSDIFRQYLDNRLVLALDGVQDPGNLGTIIRIADWFGIENIFCSQETADCWNPKV 136

Query: 177 AKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            ++  G++  +   Y+ ++ LT+ L   +      +   S  + PL ++       +++G
Sbjct: 137 VQATMGSIARVKLHYLNLNRLTEGLPADYPVYATLLDGDSLYEYPLSKQ-----GMIVMG 191

Query: 235 AEGKGLRP 242
            EG G+ P
Sbjct: 192 NEGNGITP 199


>gi|193211994|ref|YP_001997947.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
 gi|193085471|gb|ACF10747.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
          Length = 256

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 8/174 (4%)

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           K + + A  QG+    A    P +   R ++   ++ LD V DP N+G I+R+A  F  +
Sbjct: 73  KRLAQTASPQGV---CAAFRKPEMGEFRPAERSFVVALDDVQDPGNVGTIIRTAAWFGAE 129

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I     +   +A   +S +G++  +  I + +L   L+++ + GF     + D +   
Sbjct: 130 AVICGPGTADPWNAKTVRSTAGSIFALRIIDVPDLAAELKRLQAAGFTVAAAALDGQDYR 189

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAV 271
                 D+ AL++G E  G+  K    A S   + H      +++LN S +A +
Sbjct: 190 SFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLNASVSAGI 243


>gi|149194690|ref|ZP_01871785.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
 gi|149135113|gb|EDM23594.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 8/151 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHI 187
           R   L + +D+V  PHN+ AI+R     +CD +   K Y   +  V   +    GA + +
Sbjct: 19  RQDTLRVFMDYVYSPHNLSAIVR-----TCDAVNVGKLYYRHQKKVKLNNEITMGAHKWL 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQE 246
               + ++ +  + +   G+Q +    D      +E+   K  LI LG E  G    + +
Sbjct: 74  FTEYVEDIENFYKNIKEKGYQVVVTLLDKDTIDFREVDYTKPTLIVLGNEVDGASEVSIK 133

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G+ ++LNVS A AV LY  Q
Sbjct: 134 YADKKVIIPMYGMSQSLNVSVANAVILYEAQ 164


>gi|220678249|emb|CAX14272.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
           protein 1 (TARBP1) [Danio rerio]
          Length = 191

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S LL+V   ++ P N+G + R+   F    ++       ++    A S S  L  +P +
Sbjct: 34  TSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQFQALSVSSEL-WLPMM 92

Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +  + L+D LQ   S G+  IG+   S  + L+     +K  L+LG E +G+     + 
Sbjct: 93  EVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQL 152

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                 +   G+ ++LNV  +AA+ ++  T+ H
Sbjct: 153 LDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQH 185


>gi|254372726|ref|ZP_04988215.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570453|gb|EDN36107.1| rRNA methyltransferase [Francisella novicida GA99-3549]
 gi|328676847|gb|AEB27717.1| rRNA methyltransferase [Francisella cf. novicida Fx1]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 25/163 (15%)

Query: 124 PTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAK 178
           P L+ +  S   ++VLD + DP NIG ILR+A+A     +I    T   ++P       +
Sbjct: 93  PKLEELSFSDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IR 148

Query: 179 SASGALEHIPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIAL 231
           +  GA   + +  I+NL +      LQ+   W   T   G+S  +K     E K     L
Sbjct: 149 AGMGAQFSLKFSYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSIL 202

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + G E  G+   +    T +  L     I++LNV+ AA + L+
Sbjct: 203 VFGEEANGIEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242


>gi|86133883|ref|ZP_01052465.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820746|gb|EAQ41893.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 171

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 9/157 (5%)

Query: 125 TLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           T + V N Q    + +V D +  P NIG   R + +F  + I   +     E+  +  +A
Sbjct: 5   THNDVENQQQKFPITIVCDAIRTPENIGMCFRISESFGVEKIYFHENSPSIENRKVINTA 64

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEG 237
              +  I Y   S     +Q++   G   IG+    K    Q+    K +KI L+LG+E 
Sbjct: 65  RNTINQIEYQTYSEFDQLIQELKQKGNTIIGIEITDKSIDIQDFDFKKYEKIVLLLGSER 124

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+  +          + M G   ++NV ++ A+ LY
Sbjct: 125 NGI--ENINLVDETIAIPMYGRNSSMNVIHSLAITLY 159


>gi|218659677|ref|ZP_03515607.1| rRNA methylase protein [Rhizobium etli IE4771]
          Length = 343

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +  + LD V DP N+G I+R+A A    G+I     +   S    ++  G++  +P 
Sbjct: 48  REGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPV 107

Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            R +      ++  +W  ++ G+S      + +      + +   I L++G E  GL  +
Sbjct: 108 ARATP-----EEFLAWR-KSAGVSVVATHLAGAVDYRTIDYRKKPIVLLMGNEQSGLPEQ 161

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + A ++A +   G   +LN++ A AV L+
Sbjct: 162 LAKEADALARIPQQGRADSLNLAVATAVMLF 192


>gi|187917931|ref|YP_001883494.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
 gi|119860779|gb|AAX16574.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGII-TTKRYSPSESAVLAKSASGALEH 186
           R + L +VL+ +  P N  A +R+   +  S   II T  +Y+ +   VL     GA + 
Sbjct: 40  RTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNKYTLNPGVVL-----GASKW 94

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I  I+   +  A   +   G++ +  S D+K   LE    + K+A+  G E  GL     
Sbjct: 95  IDIIKYKCVKAAFDNLKGNGYKIVATSLDNKAISLEDFPIDAKLAIFFGTELTGLSHSVL 154

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A     + M G  ++ N+S A A+  Y
Sbjct: 155 ENADLHLKIPMYGFTQSYNLSVAVAIVFY 183


>gi|311271147|ref|XP_001927654.2| PREDICTED: probable methyltransferase TARBP1 isoform 1 [Sus scrofa]
          Length = 1628

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++ +      +      S S A + +P + 
Sbjct: 1469 SRLVVVASLIDKPTNLGGLCRTCEVFGASALVVSSLQCIRDKQFQHLSVS-AEQWLPLVE 1527

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  +G+   ++   L Q    +K  L+LG E +G+     +  
Sbjct: 1528 VKPPQLIDYLQEKKAEGYTIVGVEQTARSVDLTQFCFPEKSLLLLGNEREGIPANLIQQL 1587

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1588 DVCVEIPQQGIIRSLNVHVSGALLIW 1613


>gi|304387556|ref|ZP_07369745.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|304338443|gb|EFM04564.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
           13091]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP N+G +LRSA A     ++  +  +   S  + ++  GA   +     ++L
Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYSQADL 174

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L       F T  L  + +  L  E   +  A + G EG G+     + A     + 
Sbjct: 175 EIWLASYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIP 233

Query: 256 MPGIIKALNVSNAAAVALY 274
           M    ++LNV+ AA + L+
Sbjct: 234 MHDATESLNVAMAATICLF 252


>gi|254671869|emb|CBA04093.1| putative RNA methyltransferase [Neisseria meningitidis alpha275]
 gi|319410442|emb|CBY90802.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
           Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
           WUE 2594]
 gi|325128267|gb|EGC51152.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     ++  +  +   S  + ++  GA   +     ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYSQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L       F T  L  + +  L  E   +  A + G EG G+     + A     +
Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|134103609|ref|YP_001109270.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291004854|ref|ZP_06562827.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916232|emb|CAM06345.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 215

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++    HNIG ++R+A AF+   +    R   +    +       + H P 
Sbjct: 62  RRHGFHVAIENFQHDHNIGTVVRTANAFAARAVHIVGRRRWNRRGAMVTDRYQHVHHHPD 121

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +       A  + HS     +  ++   +P+E+    ++  L+ G EG GLR +++E A 
Sbjct: 122 L---ESLRAYAREHSLAVVAVD-NTQGSRPIERTALPERCVLLFGQEGPGLRDESREGAD 177

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  +   G  +++N   AA + ++
Sbjct: 178 LVVSIAQFGSTRSINAGVAAGIVMH 202


>gi|325192103|emb|CCA26564.1| SpoU rRNA Methylase family putative [Albugo laibachii Nc14]
          Length = 1716

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/150 (20%), Positives = 67/150 (44%), Gaps = 5/150 (3%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            ++++++M    ++   N+  + R+   F  + ++ +   +    A     +S A + I  
Sbjct: 1553 KSNRVIMCASLIDKVTNLAGLARTCEIFGAEKLVVSNLNTIKNDATFVSMSSSAHKWIKM 1612

Query: 190  IRISNLTDALQKMHSWG----FQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKT 244
             +IS     +  +H W     +  IGL   S+     + +  DK  +ILG+EG G+  + 
Sbjct: 1613 EQISRGESLIDAIHHWKEVEKYHIIGLEQTSRSQCCSKYRFPDKAVIILGSEGAGIPVEI 1672

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     +   G++++LNV  + A+ L+
Sbjct: 1673 LRLVDVCVEIPQFGLVRSLNVHVSGAILLW 1702


>gi|323436083|ref|ZP_08088232.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|321496398|gb|EAQ38693.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 283

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P   A+  S L +VLD V DP N+G I+R    F    ++ +K      +  + ++  G+
Sbjct: 130 PEAIAIDRSGLTVVLDDVRDPGNLGTIIRLCDWFGIKQLVCSKATVDCYNPKVVQATMGS 189

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L  +  I     TD    + +      G   D +      +  + + +++G E  G+   
Sbjct: 190 LTRVSII----YTDIDTYLSNEDRPVFGTFMDGENIYAASLPQEGV-IVMGNEANGISTS 244

Query: 244 TQETATSMAHLHMPGIIKA---LNVSNAAAVAL 273
            +E  T    +   GI +A   LNV+ A A+ L
Sbjct: 245 IEELVTKRIAIPRFGITQATESLNVATATAICL 277


>gi|227489272|ref|ZP_03919588.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227540862|ref|ZP_03970911.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090803|gb|EEI26115.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183394|gb|EEI64366.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 16/151 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R   L + +++  +  NIG ++R+A AF+ D + I  +R      A++       + H  
Sbjct: 60  RRHPLHIAIENFENDMNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHH-- 117

Query: 189 YIRISNLTDALQKMHSWG----FQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                   D +  + SW      Q + + +     PLE     ++  L+ G EG G+ P+
Sbjct: 118 --------DTIADLISWANEQDLQVLAIDNIPGSVPLETATLPERCLLLFGQEGPGVTPE 169

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+ A     +   G  +++N   AA +A++
Sbjct: 170 AQDAAVMTLSIAQFGSTRSINAGVAAGIAMH 200


>gi|292620337|ref|XP_002664256.1| PREDICTED: probable methyltransferase TARBP1-like [Danio rerio]
          Length = 241

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S LL+V   ++ P N+G + R+   F    ++       ++    A S S  L  +P +
Sbjct: 84  TSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVNDKQFQALSVSSEL-WLPMM 142

Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +  + L+D LQ   S G+  IG+   S  + L+     +K  L+LG E +G+     + 
Sbjct: 143 EVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKSLLLLGNEREGIPANVLQL 202

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                 +   G+ ++LNV  +AA+ ++  T+ H
Sbjct: 203 LDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQH 235


>gi|319951639|ref|YP_004162906.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319420299|gb|ADV47408.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 5/148 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186
           A R +++ + ++ V   HN  A++RS   F   +  +  ++Y     + +A  +   ++ 
Sbjct: 46  AERTNKITVAVEDVFQMHNTSAVVRSCDIFGIQEAHLIERKYGDQLDSQIAMGSQKWVDI 105

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQ 245
             Y    N  D L++    G++ I  +  +   L ++ +   KIAL  G E  GL  +  
Sbjct: 106 HRYESTKNCMDTLKQN---GYKIIATTPHNDSCLLEDFEIEGKIALFFGTERNGLSEEVL 162

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + A     + M G  ++LN+S +AA+ L
Sbjct: 163 KNADGFLKIPMVGFTESLNISVSAAIIL 190


>gi|288958794|ref|YP_003449135.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288911102|dbj|BAI72591.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 254

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 18/156 (11%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVL--AKSA 180
           P +D  R  Q L +L  + DP N+GA+LRSA +F    I+  +  + P     L  A +A
Sbjct: 104 PAIDLSRPPQGLELLCALGDPSNLGALLRSAASFGVSRIVLLEGAAHPFHPKCLRAASNA 163

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
             AL  +   R + + DA   +++      G  +D    L +      + LILG EG+G+
Sbjct: 164 QFALTLLRGPRWAAVNDAAGPLYA----LDGGGAD----LTRFDWPADMRLILGEEGQGV 215

Query: 241 RPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274
                      A L +P  G +++LN + A +VAL+
Sbjct: 216 -----PADCPAARLSVPTTGAVESLNATVAVSVALF 246


>gi|187931908|ref|YP_001891893.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254369390|ref|ZP_04985402.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122340|gb|EDO66480.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|187712817|gb|ACD31114.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 24/155 (15%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +   ++VLD + DP NIG ILR+A+A     +I    T   ++P       ++  GA   
Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IRAGMGAQFS 156

Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + +  I+NL +      LQ+   W   T   G+S  +K     E K     L+ G E  G
Sbjct: 157 LKFGYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +    T +  L     I++LNV+ AA + L+
Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242


>gi|42523135|ref|NP_968515.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39575340|emb|CAE79508.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 251

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 19/160 (11%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E APL +   +       L V+  + DP N+GA+ RS++AF    +I T+          
Sbjct: 102 EIAPLTTAKAEG------LEVISPLGDPSNLGALARSSLAFGASKMILTEESCSPYHPKA 155

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
            K+++GAL  +P  +I    D +      +     G S ++ K P     KN +IA  LG
Sbjct: 156 IKASAGALLKLPLFKIGKFADFVSNNDQIYALDMKGESVANFKWP-----KNVRIA--LG 208

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            EG G          S+A       +++LN + A ++ALY
Sbjct: 209 EEGPGFSGIKNLQRLSVATQS----VESLNATVAGSIALY 244


>gi|327312806|ref|YP_004328243.1| TrmH family RNA methyltransferase [Prevotella denticola F0289]
 gi|326945589|gb|AEA21474.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289]
          Length = 205

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 31/172 (18%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ RSA AF  + I      +   +A + K+A G  + + +    
Sbjct: 25  LIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGGEDSVAWRYFE 84

Query: 194 NLTDALQKMHSWGF------QTIG----------LSSDSKKPLEQEI------------- 224
              +A++++H  G       Q  G          L + + + +EQ+              
Sbjct: 85  RTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDTRLLTSAPREMEQDCPAADTSHPTHPLH 144

Query: 225 --KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + + AL++G E KG++    + +     +   G   +LNVS  A + ++
Sbjct: 145 PRHDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIW 196


>gi|325859781|ref|ZP_08172911.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
 gi|325482707|gb|EGC85710.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
          Length = 205

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 31/172 (18%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ RSA AF  + I      +   +A + K+A G  + + +    
Sbjct: 25  LIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAEIHKTALGGEDSVAWRYFE 84

Query: 194 NLTDALQKMHSWGFQT----------------IGLSSDSKKPLEQEI------------- 224
              +A++++H  G                   I L + + + +EQ+              
Sbjct: 85  RTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDIHLLTSAPREMEQDCPAADTSHSILPLH 144

Query: 225 --KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + + AL++G E KG++    + +     +   G   +LNVS  A + ++
Sbjct: 145 PKPDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIW 196


>gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
 gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
          Length = 229

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILTTHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|90021648|ref|YP_527475.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
 gi|89951248|gb|ABD81263.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
          Length = 224

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 13/154 (8%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187
           R   L ++ + V    N+ AI+R+     CD  GI       P E    + + + A  H 
Sbjct: 16  RQPDLTVITEEVQKGRNLSAIIRT-----CDAVGIPEVHSVVPRE-GFTSYNGTAASAH- 68

Query: 188 PYIRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
            ++ I + + AL+ + +    G+Q +    D      +EI   K  AL++GAE  G+   
Sbjct: 69  KWVDIHHYSTALEPITALTQQGYQIVAAHVDRNAKDFREIDYTKPTALLMGAEIWGVSEP 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +E  T   HL M G+I++ NVS A A  L   Q
Sbjct: 129 ARELVTHTIHLPMVGMIESYNVSVACAGILLEAQ 162


>gi|282896219|ref|ZP_06304242.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
 gi|281198908|gb|EFA73786.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
          Length = 263

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 65/148 (43%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + L+ + DP N+G I+R+A A    G+  +      +   + ++++G    +      
Sbjct: 110 LALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKKQVSH 169

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL D +Q     G Q +     ++    Q   +    ++LG EG GL       A     
Sbjct: 170 NLKDTVQDCQRGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDDLATMANIQVK 229

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + +   +++LNV+ +AA+ LY  Q   A
Sbjct: 230 IPLSPQVESLNVAISAALILYEAQRQKA 257


>gi|149280368|ref|ZP_01886489.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
 gi|149228917|gb|EDM34315.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
          Length = 249

 Score = 45.1 bits (105), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           +VLD V DP N+G I+R+A  F    II    T + Y+P       K+    +  +  ++
Sbjct: 108 LVLDDVQDPGNLGTIIRTAEWFGFRQIICSPHTVEVYNP-------KTVQATMGSLSRLK 160

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           +   TD    + +      G   D K   E     + + +ILG EG+G+ P+  +  T  
Sbjct: 161 VY-YTDLAPLLSNTPVPVFGAVLDGKSIYEGGWGTEGL-VILGNEGQGISPEIMKLITHP 218

Query: 252 AHLHMPGIIKALNVSNAAAV 271
             +   G  ++LNV+  AA+
Sbjct: 219 VTIPRVGAAESLNVAICAAI 238


>gi|116791065|gb|ABK25846.1| unknown [Picea sitchensis]
          Length = 236

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 11/149 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +++ +V   HNIG ++R+A AF    +I   R   +     A  + G+  H+ +     
Sbjct: 4   FVIVHNVAKRHNIGTLVRTATAFGVSEVILVGRKDFN-----AFGSHGSTLHLNFRHFYT 58

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L  A Q +        G+  +D    + +       A +LG EG GL  K  E      +
Sbjct: 59  LQQAHQYLKDKDSDICGVEIADGAIAVHEHPFKKSTAFLLGNEGTGLSSKEMEICDYFVY 118

Query: 254 LHMPGIIKA-LNVSNAAAVALYITQNHFA 281
           +   G   A LNV+ AA++ L+    HFA
Sbjct: 119 ISQYGCGTASLNVTVAASIVLH----HFA 143


>gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87]
 gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87]
          Length = 268

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSAS 181
           L+   N+ L++V +    P NIGA+LR+A A + D ++     T  Y+P+    + +S+ 
Sbjct: 112 LNFSHNNPLILVAEAPEKPGNIGALLRTADAANVDAVLIANPKTDLYNPN----IIRSSV 167

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGK 238
           G +     I I   ++ ++ +     + I + + + +  E   K D     A+++G E  
Sbjct: 168 GCV-FTNKIAIGTTSEIIKFLQH---KNIAIYAAALQASEIYTKIDFTKASAIVVGTEAT 223

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           GL  + +E AT    + M G I ++NVS AA + ++
Sbjct: 224 GLNQEWREAATQNIIIPMNGAIDSMNVSVAAGILIF 259


>gi|88801799|ref|ZP_01117327.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
           23-P]
 gi|88782457|gb|EAR13634.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
           23-P]
          Length = 175

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++LD++   +NIGA+ R++ AF  + I      +   +  + K+A GA E + +
Sbjct: 21  KKTPLIVILDNIRSVNNIGAVFRTSDAFLIEKIYLCGICAIPPNKEIHKTALGATESVTW 80

Query: 190 IRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               +    ++ +     + + +      +K  +    K +K A++LG E KG++ +  +
Sbjct: 81  EYAEDTLTLIENLKKEKIKVLAIEQAEGSTKLDVFFPDKGEKYAIVLGNEVKGVQQEVVD 140

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     +   G   +LN+S  A V ++
Sbjct: 141 AADVCIEIPQLGTKHSLNISVTAGVVIW 168


>gi|254431824|ref|ZP_05045527.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
 gi|197626277|gb|EDY38836.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
          Length = 285

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++L++ LD V DP N+G ++R+A+A   + +   +   P +   L  SA  AL  +P  
Sbjct: 114 TARLVLALDGVQDPGNLGTLMRTALAAGVEALWLAEGADPLQPKALRASAGAALA-LPLQ 172

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGK 238
           R S  T  L ++     +T    S++ +            P  Q        L+LG EG 
Sbjct: 173 RGSRET-LLHQLGELAARTAETGSEALQVVATVPPQAGAIPYWQLDWQRPTVLLLGQEGA 231

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL  +  + AT    +     +++LNV+ AAA
Sbjct: 232 GLSGQLLQRATHRVTIPHSAAVESLNVAVAAA 263


>gi|118497361|ref|YP_898411.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           U112]
 gi|195536050|ref|ZP_03079057.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|118423267|gb|ABK89657.1| rRNA methyltransferase [Francisella novicida U112]
 gi|194372527|gb|EDX27238.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
          Length = 250

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 24/155 (15%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +   ++VLD + DP NIG ILR+A+A     +I    T   ++P       ++  GA   
Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IRAGMGAQFS 156

Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + +  I+NL +      LQ+   W   T   G+S  +K     E K     L+ G E  G
Sbjct: 157 LKFGYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +    T +  L     I++LNV+ AA + L+
Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242


>gi|260771994|ref|ZP_05880911.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
           CIP 69.14]
 gi|260612861|gb|EEX38063.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
           CIP 69.14]
          Length = 228

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 79/151 (52%), Gaps = 7/151 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIP 188
           R + L + L+ V+ P+N+ A++R+A A    G+       P+E    L+ +++GA   + 
Sbjct: 16  RQTDLTVCLEEVHKPNNVSAVIRTADAV---GLHQIHAVWPNEQMRTLSHTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE 246
               ++  +A+  +   G Q + +++ S+  ++    +     A+I G+E  G+ P+  +
Sbjct: 73  VQTHNSTLEAVSHLKETGMQIL-VTNLSEHAIDFRAIDYTQPTAIIFGSEKSGISPQALQ 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G++++LNVS A+A+ LY  Q
Sbjct: 132 LADHDIVIPMVGMVQSLNVSVASALILYEAQ 162


>gi|116328938|ref|YP_798658.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330456|ref|YP_800174.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121682|gb|ABJ79725.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116124145|gb|ABJ75416.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 277

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 14/155 (9%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALEHIP-Y 189
           ++V++ V  P N+G ILR+A       +I +      ++P+    + ++++GAL  +  Y
Sbjct: 130 ILVIEGVEKPGNLGTILRTAEGAGFHTVIVSDPKLDLFNPN----VIRASTGALFTLDVY 185

Query: 190 I-RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  I  +   L+K H   ++T+ ++ ++KK         KIAL+ G+E  GL    +  +
Sbjct: 186 LGEIETIYGILKKNH---YRTLAVTPEAKKFYFDADLKGKIALVFGSEQYGLSSYARNHS 242

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
                L M G   +LN++ +A + +Y + +  F K
Sbjct: 243 DEYLSLPMLGEADSLNLAMSAGILMYEVIRQGFEK 277


>gi|94968939|ref|YP_590987.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550989|gb|ABF40913.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
          Length = 161

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 1/140 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V   +N+GA  R+A   +   +      +      ++K+A GA E +P+    + 
Sbjct: 11  VLLDNVRSMYNVGAFFRAADGVNLQKLCLCGITAHPPKKAISKTALGAEETVPWEHGWDA 70

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            +  + + + GFQ   + ++ +   L        + ++ G E  GL P+    A     +
Sbjct: 71  VEMAKHLRAEGFQLAAIETNPEATDLFDWQPRFPVCVVFGHEVGGLLPELLALADVHMRI 130

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G   +LNV+ A  V LY
Sbjct: 131 PMRGEKTSLNVATAGGVVLY 150


>gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
 gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
          Length = 178

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 3/142 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD+V    N+GA  R+A AF+ + I      +   +  + K+A GA   + +   +  
Sbjct: 27  VVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTALGAELTVAWDYFAAT 86

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMA 252
           TD +  + + G+    +       +  E +     K AL+ G E  G+  +  + A    
Sbjct: 87  TDCIAALRAQGYLIYVVEQVEGAVMLDEFRPRPGQKYALVFGNEVDGVAQEVVDAADGAI 146

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            +   G   ++NVS A  V L+
Sbjct: 147 EIPQAGTKHSVNVSVAGGVVLW 168


>gi|332970580|gb|EGK09567.1| tRNA/rRNA methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 278

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++L+ V D  N+G +LR+A A     II TK  + + S    ++  GA      + I  
Sbjct: 133 CLILNDVQDNGNVGTLLRTAAAVGIKNIICTKGSAQAWSPKTMRAGMGAQFG---LTIYE 189

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             +A + +          SS +   + ++  N  +A ++G EG+G+     + AT +A L
Sbjct: 190 GIEADEVLSYLRLPVYATSSHTDNIIYKQNLNRPVAWVMGHEGQGVCEAIMKEATPVA-L 248

Query: 255 HMPGIIKALNVSNAAAVALYIT 276
             P   ++LNV+ A A+ +Y T
Sbjct: 249 PQPNGQESLNVAIAGALCMYET 270


>gi|124007000|ref|ZP_01691829.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
 gi|123987453|gb|EAY27173.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
          Length = 176

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 72/152 (47%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD++   HN+G+  R++ AF  + I      +      + K+A GA E + +  ++
Sbjct: 25  VVIVLDNIRSMHNVGSSFRTSDAFLVEKIYLCGITAKPPHREIQKTALGATESVAWQHVA 84

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKND-KIALILGAEGKGLRPKTQETATS 250
              +AL  +   G+  + +   D    LE+   + D K A + G E  G+  +  + A  
Sbjct: 85  TTEEALATLKQEGWTIVAIEQVDKSVSLEKFNFEADKKYAFVFGNEVFGVDEEVVKQADV 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   +LN+S +  V ++   ++F+K
Sbjct: 145 CIEIPQFGTKHSLNISVSMGVVIW---DYFSK 173


>gi|282877059|ref|ZP_06285902.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
 gi|281300830|gb|EFA93156.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
          Length = 288

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
           +L++ LD + DP N+G I+R A  F    +I ++  +   +  + ++  G++ H  + Y+
Sbjct: 137 ELVLALDGIQDPGNLGTIIRIADWFGIRNVICSEDTADVYNPKVVQATMGSIAHVDVTYL 196

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG----LRPKTQE 246
            + +  DAL           G   D +   +Q +    I +I+G EG G    LR +   
Sbjct: 197 NLCDFVDALPA----STPVYGTLLDGEDIYQQTLTATGI-IIMGNEGNGISKDLRARINH 251

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVA 272
                    +P   ++LNV+ A A+A
Sbjct: 252 ALLIPNFSTLPNKAESLNVAIATAIA 277


>gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/144 (19%), Positives = 70/144 (48%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD++   +N+G++ R+A AF  + +      +      + K+A GA + + +  + 
Sbjct: 27  LIIVLDNIRSLNNVGSVFRTADAFLVEKVYLCGITATPPHRDIQKTALGATDAVAWEYVE 86

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATS 250
           +     Q++   G +   +       +  +   +K ++ A++ G E KG++ +    + +
Sbjct: 87  DSVALSQRLKEQGVKLCAIEQAEDAVMLDKFTPVKGERYAVVFGNEVKGVQQEIVSLSDT 146

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G   +LN+S +A V ++
Sbjct: 147 VLEIPQVGTKHSLNISVSAGVVIW 170


>gi|161524445|ref|YP_001579457.1| tRNA/rRNA methyltransferase SpoU [Burkholderia multivorans ATCC
           17616]
 gi|189350800|ref|YP_001946428.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|160341874|gb|ABX14960.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia multivorans ATCC
           17616]
 gi|189334822|dbj|BAG43892.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
          Length = 260

 Score = 45.1 bits (105), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 114/269 (42%), Gaps = 43/269 (15%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW 83
           R++  YK++++    + H  +     L G H  SA L+  +  I +L +AT+ AL   + 
Sbjct: 7   RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGA--IPELCVATEGALGHAEA 64

Query: 84  DANLPHPFPVKTVPPQTI----DKIVGKEA-VHQGLAL------ETAPLLSPTLDAVRNS 132
            A       V  +  Q I    D + G+ + V  G+         + PL +      R +
Sbjct: 65  QAI------VARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPA------RVA 112

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-------LE 185
              +VLD V D  N+G+ILRSA A     +      + + S+ + ++  GA        +
Sbjct: 113 HTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHED 172

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             P    + L   +    S G Q I    D  +P         +A + G EG G+    +
Sbjct: 173 VAPDALAARLDVPVALTDSHGAQAI-YDCDLSQP---------VAWVFGNEGAGVSAFWR 222

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + A     +  PG +++LNV+ AAAV L+
Sbjct: 223 DIAAHRVTIPQPGGMESLNVAAAAAVCLF 251


>gi|242241345|ref|YP_002989526.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
 gi|242133402|gb|ACS87704.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
          Length = 230

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 3/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +     +  +    L  +A+G+   +  
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTNRMKTLVSTAAGSNSWVQV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
               ++ DA+  + S G Q +  +  +     +++   +   ++LG E  G+  +    A
Sbjct: 74  KTHRSIHDAVSHLKSQGMQVLATNLSASAVDFRDVDYTRPTCILLGQEKTGISAEALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+A+ LY  Q  
Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|291295473|ref|YP_003506871.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
 gi|290470432|gb|ADD27851.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
          Length = 266

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 20/183 (10%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFS 158
           + KI  +E  H    L  A +  P+L A + S   LL+V   +  P N+GA+LRSA A  
Sbjct: 83  LKKISSRE--HPAGVLAVARMPRPSLAAFQPSSNALLLVSVGLEKPGNLGALLRSADAAG 140

Query: 159 CDGIIT---TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ----TIG 211
            D ++       YSP     + ++++G +  +P           Q +  W  Q     + 
Sbjct: 141 ADAVLVAGGVDLYSPQ----VIRNSTGVVFSLPTFAAPE-----QAVLDWLLQHNIPIVA 191

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            +  + +          +A++LG E +GL     E A     + M G   +LNVS  AA+
Sbjct: 192 TTPHTHQTYWDVDLRGPVAIVLGTEHQGLSQTWLERAARKVRIPMQGQADSLNVSVTAAL 251

Query: 272 ALY 274
            LY
Sbjct: 252 MLY 254


>gi|308234552|ref|ZP_07665289.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium vaginae DSM 15829]
 gi|328944150|ref|ZP_08241615.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327492119|gb|EGF23893.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 272

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 19/226 (8%)

Query: 66  RKIFQLLATKNALARLDWDANL--------PHPF---PVKTVPPQTIDKIVGKEAVHQGL 114
           + +F+L    + ++ L WD +L        P  F   P+     + + K+VG        
Sbjct: 45  QTVFEL--HVDVISVLVWDKHLSNLERSISPEAFGDVPIYVASHELLSKLVGFNVCRGYY 102

Query: 115 ALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           A    P LLS       +   + V++ + D  N+GA++R+A A   D ++ +   +   +
Sbjct: 103 ACVRRPSLLSSASVDWHSYTRIAVVEDLCDVSNLGALIRNACALGIDAVVCSPTCADPFN 162

Query: 174 AVLAKSASGALEHIPYIRI-SNL-TDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDK- 228
               +++ G +  +P I+  SN   D    + S  +   G  L  D+    + +  + K 
Sbjct: 163 RRCVRTSMGTVFRLPIIQANSNWPYDVFSCLSSADYTVFGAALRKDALNVHDVDFSHYKR 222

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            AL  G E KGL     +    +  + M   + +LNV+ ++AV  +
Sbjct: 223 CALCFGNESKGLSTPVIDACDQLVMIPMKHGVDSLNVAASSAVLFW 268


>gi|319957044|ref|YP_004168307.1| tRNA guanosine-2'-o-methyltransferase [Nitratifractor salsuginis
           DSM 16511]
 gi|319419448|gb|ADV46558.1| tRNA guanosine-2'-O-methyltransferase [Nitratifractor salsuginis
           DSM 16511]
          Length = 217

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 8/154 (5%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASG 182
           L A +   L + LD V+D  N+ A++R+A A     I   +   ++ P  + V   +   
Sbjct: 20  LLAAKQPCLQIFLDDVHDSRNMSAVIRTADAVGVLDIFYARNNPQHVPVHTLVTQGAHRW 79

Query: 183 ALEH-IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGL 240
              H IPY       + L+K    G Q +    +      +++   +   L+LG E +G+
Sbjct: 80  LRRHRIPY---EERAEFLRKKREEGMQIVVTHLEEASLDFRDVDYTRPTMLVLGNEREGV 136

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P+    A+    + M G++++LN+S AAA+ LY
Sbjct: 137 SPEVLAEASHSVIIPMHGMVQSLNISVAAALILY 170


>gi|158520421|ref|YP_001528291.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
 gi|158509247|gb|ABW66214.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
          Length = 490

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 9/133 (6%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N GA +RSAVAF    I+     +        ++++GA+ H P     +L D  + 
Sbjct: 360 QDPENAGAAIRSAVAFGAAKIVLLSECAHPFHPKTIRASAGAVLHAPLFEGPSLKDLPED 419

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +       + LS +   P+          L+ G EG GL    +  A S+    + G ++
Sbjct: 420 L-----PIVPLSMEG-APITGFSFPAAFGLLAGIEGPGLPDAWRSRAVSIP---VTGAVE 470

Query: 262 ALNVSNAAAVALY 274
           +LN + A AVALY
Sbjct: 471 SLNAATAIAVALY 483


>gi|221215472|ref|ZP_03588436.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
 gi|221164656|gb|EED97138.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
          Length = 260

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 45/270 (16%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDW 83
           R++  YK++++    + H  +     L G H  SA L+  +  I +L +AT+ AL   + 
Sbjct: 7   RDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGA--IPELCVATEGALGHAEA 64

Query: 84  DANLPHPFPVKTVPPQTI----DKIVGKEA-VHQGLAL------ETAPLLSPTLDAVRNS 132
            A       V  +  Q I    D + G+ + V  G+         + PL +      R +
Sbjct: 65  QAI------VARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPA------RVA 112

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VLD V D  N+G+ILRSA A     +      + + S+ + ++  GA   +  I  
Sbjct: 113 HTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGA-HFVLSIHE 171

Query: 193 SNLTDALQK--------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
               DAL            S G Q I    D  +P         +A + G EG G+    
Sbjct: 172 DVAPDALAARLDVPVALTDSHGAQAI-YDCDLSQP---------VAWVFGNEGAGVSAFW 221

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ A     +  PG +++LNV+ AAAV L+
Sbjct: 222 RDIAAHRVTIPQPGGMESLNVAAAAAVCLF 251


>gi|222149594|ref|YP_002550551.1| RNA methylase [Agrobacterium vitis S4]
 gi|221736576|gb|ACM37539.1| RNA methylase [Agrobacterium vitis S4]
          Length = 279

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 10/203 (4%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQG-LALE---TAPLLSPTLDAVRNSQLLMVLDHVND 143
           P   PV       +D I G   +H+G LAL    TAP  +  + ++    L++V   +++
Sbjct: 77  PDDLPVYVASAAVLDAIAGFH-LHRGVLALGSRLTAPDATQLIASLPQRALVLVGCGISN 135

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GA+ R+A  F  D ++  +           + + G++  +PY R  +    L  + 
Sbjct: 136 HDNVGAMFRNATGFCADAVLLDETSCDPLYRKALRVSVGSVLTMPYAREHSAIALLSALD 195

Query: 204 SWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           + GF    L+      +           ++AL++G EG+GL         ++     P  
Sbjct: 196 AAGFLVAALTPSGTTEIGDIASGLGGQQRLALVVGTEGEGLPADVLARFMTVRIAQSPQ- 254

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
           + +LN+  A+ +AL+       K
Sbjct: 255 LDSLNLGTASGIALHSAARALGK 277


>gi|325955086|ref|YP_004238746.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323437704|gb|ADX68168.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 177

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD++   HN+GA+ R+A AF  + +      +      + K+A GA E + +    
Sbjct: 25  VVVVLDNIRSMHNVGAVFRTADAFLIEKVYLCGITATPPHKEIHKTAIGATESVDWEYEE 84

Query: 194 NLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250
           N  + ++K+    +  + +    +S    E E+  + K A+++G E  G++ +  +    
Sbjct: 85  NALNLIEKLRKDNYSIVCIEQVENSISFPEYEVDPSRKYAIVMGNEVDGVQQEIIDKTDV 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS    + L+
Sbjct: 145 CLEIPQSGTKHSLNVSVCTGIVLW 168


>gi|302766003|ref|XP_002966422.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
 gi|300165842|gb|EFJ32449.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
          Length = 220

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  +V+ +V   HNIG + RSA AF    +I   +   +     +  + G+  H+ +   
Sbjct: 2   ECYVVVHNVAKRHNIGTLARSATAFGVSEMILVGKKDFN-----SFGSHGSAHHVRFRHF 56

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +L +A   +   G    G+  ++    + +       A +LG EG GL PK  E     
Sbjct: 57  HSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLSPKEMEICDFF 116

Query: 252 AHLHMPGIIKA-LNVSNAAAVALY 274
            ++   G   A LNV+ AA++ L+
Sbjct: 117 TYIPQVGSGTASLNVTVAASIVLH 140


>gi|333025681|ref|ZP_08453745.1| putative rRNA methylase [Streptomyces sp. Tu6071]
 gi|332745533|gb|EGJ75974.1| putative rRNA methylase [Streptomyces sp. Tu6071]
          Length = 266

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 10/151 (6%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P     R S LL VLD   +  N GA++R A  F   G++TT    P   AV+ ++ +G 
Sbjct: 117 PGFAGPRTSPLL-VLDEPRNLGNAGAVIRLAAGFGASGVVTTGDLDPWHPAVV-RAGAGL 174

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
               P  R +     L     W F   G   D +      + +D + L  G+E  GL   
Sbjct: 175 HFATPVARRA--VPELPAGPLWAFDAEG--EDLRG---LRVPDDAL-LAFGSERHGLTAA 226

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +E A  +  L M   + + N++ +  +ALY
Sbjct: 227 VRERADRLVALPMRPHVSSYNLATSVGMALY 257


>gi|281421671|ref|ZP_06252670.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
 gi|281404305|gb|EFB34985.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 13/176 (7%)

Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L T  +   TL+  + ++   L++VLD V   +N+G++ RS  AF  + +      +   
Sbjct: 4   LRTIEMNRLTLEEFKGAEKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF------QTIGLSSDSKKPLEQEIKN 226
           +  + K+A G  + + +       +A++K+   G+      Q  G +     P      +
Sbjct: 64  NVEIHKTALGGEDSVDWEYFKTTEEAVEKLKQKGYFVYSIEQVEGSTKLQNLPEAHPSLS 123

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              A+I G E KG++    + +     +   G   +LNVS  A + ++     FAK
Sbjct: 124 KGYAVIFGNEVKGVKQNIVDMSDGCLEIPQFGTKHSLNVSVTAGIVVW----EFAK 175


>gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Oceanobacter sp. RED65]
 gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65]
          Length = 249

 Score = 45.1 bits (105), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 12/143 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAV---AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           + L  V DP N+G ILR+      F C  +++     P    V+ +++ GA+ H+P  + 
Sbjct: 111 VYLYEVQDPGNLGTILRTLAWFGGFRC--VLSPNSVDPYNPKVV-RASMGAIFHVPIEQN 167

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-RPKTQETATSM 251
            ++ D   +   +    I     + KPL  E  +++   I G E +G+   +  +  T+ 
Sbjct: 168 ISIDDMQNRFDEFACLDI-----NGKPLSSEGFSEQRCFIFGNEARGVPHEELSKLKTTA 222

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +   G++++LN++ A  +  Y
Sbjct: 223 YSIQGAGVVESLNLATAVNMCAY 245


>gi|149378386|ref|ZP_01896087.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
           DG893]
 gi|149357335|gb|EDM45856.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
           DG893]
          Length = 245

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 6/151 (3%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGA 183
           TLD  R   L ++ D V+ P N+ AI+RS  AF   G+       P E      K+A G+
Sbjct: 12  TLD-TRQPDLSVLTDQVHKPRNLSAIIRSCDAF---GLANMHVVWPREGFRAFRKTAGGS 67

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              +       + DA+ ++   G +      SD      +        +I+G E  G+  
Sbjct: 68  YNWVTTHTHPTMDDAVSELKGQGHKLYAAQLSDRAIDYREADFTVPCTVIMGNEVDGVSH 127

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              E A     + M G++++LNVS+A A+ L
Sbjct: 128 GAAEQADEHIVIPMMGMVESLNVSSACAIIL 158


>gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
 gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
          Length = 178

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   +N+G++ RS  AF  + I      +   +A + K+A G  + + +   +
Sbjct: 25  LVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAEIHKTALGGEDSVDWKYFA 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
              +A+ ++ + G+    +         Q +   +  + A++ G E KG+     +    
Sbjct: 85  TTEEAVNQLKADGYFVYSIEQVEGSTKLQRLETGQGQRYAVVFGNEVKGVSQSVVDLCDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 145 CLEIPQFGTKHSLNVSVTAGIVIW 168


>gi|300175076|emb|CBK20387.2| unnamed protein product [Blastocystis hominis]
          Length = 698

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----LE 185
           +  +++++   V+   N+G + R+   F+ + I+        E    + S +      +E
Sbjct: 433 KKQKIVVIASLVDKLPNLGGLTRTGEIFAVEKIVVNSLRCKKEQVFKSTSVTAEEWVEME 492

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             P    S L   L+++   G+  +GL    + K L +    +K+AL+LG E +G+  K 
Sbjct: 493 ECPE---SELPAYLRRLKEEGYALVGLEQTVTSKTLGKVEFPEKMALVLGKEKEGIPAKI 549

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
            +       +   GII++LNV  + ++ +  YI+ N F 
Sbjct: 550 IQMLDLCIEIPQFGIIRSLNVHVSGSILIWEYISLNSFC 588


>gi|56415633|ref|YP_152708.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364560|ref|YP_002144197.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129890|gb|AAV79396.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096037|emb|CAR61624.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 229

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                  + DA+  +     Q +      K    +EI   +   +++G E  G+  +  +
Sbjct: 72  QVKTHRTIGDAVAHLKGREMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|119357220|ref|YP_911864.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
 gi|119354569|gb|ABL65440.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
          Length = 180

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 2/141 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++    N+GA+ R+A A   + II T   +      + K+A GA E + +    + 
Sbjct: 30  LMLDNIRSMWNVGAMFRTADAAGIEKIILTGYTAAPPRKEIDKTALGAQETVRWEYCESA 89

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAH 253
            +A+  + + G +   L  ++  +P     K D  + LI+G E  G+  +       +  
Sbjct: 90  LEAIATLKARGVKICALEIAEPSRPYTAMRKTDFPLCLIVGNEVDGIGDELLRECDEVIE 149

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G   +LNV+ AA V+L+
Sbjct: 150 IPQYGAKHSLNVAVAAGVSLF 170


>gi|20808975|ref|NP_624146.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20517641|gb|AAM25750.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 210

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 11/151 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R   L++ +D V + HN  AILR+     CD +   + Y  SE+     + ++ S A   
Sbjct: 23  RQKDLVVFVDDVTNEHNFSAILRT-----CDAVGVMRVYYFSEAKKGIEINEAVSMAANR 77

Query: 187 IPYI-RISNLTDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
             +I R+ +   A++++      Q +    D      +EI   K   L++G E KG+   
Sbjct: 78  WLFIERVYDREKAIKEIKERENLQVVVTWLDESSKDFREINYTKPTLLVVGNELKGVSED 137

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A     + M G++++LNVS A  + LY
Sbjct: 138 ILNLADERIVIPMMGMVQSLNVSVATGIILY 168


>gi|309798986|ref|ZP_07693243.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302]
 gi|308117390|gb|EFO54809.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302]
          Length = 128

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 4/127 (3%)

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++R+A A    G+I + + +   S    +S  G+  H+P  R+    +A  +    G   
Sbjct: 1   MIRTADAAGFSGVIVSSKSADIYSLKTLRSMQGSHFHLPIYRMP--VEAFVEEAKKGNLP 58

Query: 210 IGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           I  ++ S+K     + ++ +  AL++G EG+G+ P   + A  + H+ M G  ++LNV+ 
Sbjct: 59  ILATTLSQKSKDYRELVQLEDFALVMGNEGQGISPFMTDQADQLVHISMKGQAESLNVAI 118

Query: 268 AAAVALY 274
           AA + ++
Sbjct: 119 AAGILMF 125


>gi|157963692|ref|YP_001503726.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|157848692|gb|ABV89191.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 228

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  +NI A+LR+A A     +     +S  E  V   +ASG+ + +  
Sbjct: 16  RQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV--WSELEMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A++       Q +  + SD+              +I+G E  G+ P+    A
Sbjct: 74  RVHQSMAQAVEAFRDQDMQILATTFSDTAVDFRAIDYTKPTVVIMGNERDGVSPEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS AAA+ +Y  Q  
Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQ 164


>gi|260060604|ref|YP_003193684.1| putative SpoU rRNA methylase family protein [Robiginitalea
           biformata HTCC2501]
 gi|88784734|gb|EAR15903.1| putative SpoU rRNA methylase family protein [Robiginitalea
           biformata HTCC2501]
          Length = 178

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 14/148 (9%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD++   HN+G++ R+A AF  + +      +      + K+A GA E + +    +
Sbjct: 26  VLILDNIRSLHNVGSVFRTADAFRVEKVWLCGITAQPPHKDIRKTALGATESVAWEYAGD 85

Query: 195 LTDALQKMHS----WGFQ----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               L ++ +    W  +     + L     +P        + A +LG E KG+     +
Sbjct: 86  TLQVLDRLETTHECWALEQAEGAVSLGEFRPEP------GKRYAFVLGHEVKGVSQAVID 139

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  +   G   +LN+S AA V L+
Sbjct: 140 RCRGVVEIPQLGTKHSLNISVAAGVLLW 167


>gi|293977966|ref|YP_003543396.1| rRNA methylase [Candidatus Sulcia muelleri DMIN]
 gi|292667897|gb|ADE35532.1| rRNA methylase, putative, group 3 [Candidatus Sulcia muelleri DMIN]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++LD + D  N G+I+R++     D II +     +  ++  K++SG L  +P  +  
Sbjct: 90  LLLILDSITDVRNFGSIVRTSACTGVDAIIISNNNIVNSDSI--KTSSGGLFKVPICKEK 147

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++ + ++G Q I ++  +          +  A ILG+E KG+         +   
Sbjct: 148 NIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNPTAFILGSEEKGISINYLSICNNRVK 207

Query: 254 LHM-PGIIKALNVSNAAAVALY 274
           L +    + +LNVS A    LY
Sbjct: 208 LPLIKNSLTSLNVSVACGAILY 229


>gi|256752504|ref|ZP_05493361.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748639|gb|EEU61686.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 98

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 44/84 (52%)

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           ++SN+ + ++ +   G   +G   ++ K  E+   +  +A ++G EGKG+     +    
Sbjct: 5   KVSNINNTIRGLKERGLWIVGTDVNAGKSFEEVNYDFPVAFVIGNEGKGVSKLVLQNCDF 64

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  + M G I +LN S AA++ +Y
Sbjct: 65  VVKIPMKGKINSLNASVAASILIY 88


>gi|94502287|ref|ZP_01308767.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833855|ref|YP_001598051.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           GWSS]
 gi|94451153|gb|EAT14098.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206345|gb|ABS30655.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           GWSS]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 7/144 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++LD + D  N G+I+R++     D II +     +  ++  K++SG L  +P  +  
Sbjct: 90  LLLILDSITDVRNFGSIVRTSACTGVDAIIISNNNIVNSDSI--KTSSGGLFKVPICKEK 147

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N+   ++ + ++G Q I ++  +          +  A ILG+E KG+         +   
Sbjct: 148 NIIKIIKILKNYGIQIIAVTEKTDYLCYNINYRNPTAFILGSEEKGISINYLSICNN--R 205

Query: 254 LHMPGI---IKALNVSNAAAVALY 274
           + +P I   + +LNVS A    LY
Sbjct: 206 VKLPLIKNSLTSLNVSVACGAILY 229


>gi|282879810|ref|ZP_06288539.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
 gi|281306320|gb|EFA98351.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
          Length = 257

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 15/156 (9%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           QL++ LD + DP N+G I+R A  F+   I+ ++     Y+P    V A   S A  ++ 
Sbjct: 109 QLILALDDIQDPGNLGTIVRIADWFAIPTILCSENTADIYNP--KVVQATMGSLARVNVV 166

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           Y+ + N      + H+  F   G   D K   ++ +    + +++G EG G+    +   
Sbjct: 167 YLDLENYI----RQHASEFPVYGTLLDGKDIYQENLGGHGL-IVMGNEGNGISAAIRTFV 221

Query: 249 TSMAHLHMPGIIKALNVSNA--AAVALYITQNHFAK 282
                L++P   K+ N + +   A+A  IT + F +
Sbjct: 222 NK--PLYIPNFAKSANRAESLNVAIATAITCSEFRR 255


>gi|119477702|ref|ZP_01617852.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
           proteobacterium HTCC2143]
 gi|119449205|gb|EAW30445.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
           proteobacterium HTCC2143]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 9/148 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAF---SCDGIITTKRYSPSESAVLAKSASGALEH 186
           R   L ++ D+V+   N+ AI+R+A A    S   ++  K Y       L     G+  +
Sbjct: 16  RQPDLTVLTDYVHKGRNLSAIVRTADAVGIGSVHCVVGDKDYRSFRGTAL-----GSHRY 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
           +   R + L   +  + S GFQ +     +      E+       L++GAE  GL     
Sbjct: 71  VEVHRYTELNQPVTALKSRGFQVVAAHVSATAVDYHEVDYTAPTVLLMGAEKNGLSADGL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E A     + M G++++ NVS AA + L
Sbjct: 131 EAADIHITVPMVGMVESFNVSVAAGIIL 158


>gi|324999431|ref|ZP_08120543.1| rRNA methylase [Pseudonocardia sp. P1]
          Length = 267

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV------LAKSASG 182
           +R   L++V + +  P N+GA+LR+A A   D ++     +P  +        + +++ G
Sbjct: 108 LRPDALVLVAEGIEKPGNVGAMLRTAEACGVDAVVIA---TPDRAGTDFANPNVVRASKG 164

Query: 183 ALEHIPYIRISNLTDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            +  +P    S  T  +Q+ +   G +++  +      L +       AL++G E  G+ 
Sbjct: 165 TVFAVPV--ASAPTAEVQEWLRRRGVRSVVTTPAGTTELGRADLTGPTALVIGTEATGVT 222

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 A +   + M G + +LN S AAAV L+
Sbjct: 223 GPWLAGADATVVIPMRGTVNSLNASIAAAVVLF 255


>gi|297522032|ref|ZP_06940418.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           OP50]
          Length = 66

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 32/60 (53%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P L A  +   L++LD V DPHN+GA LRSA A     +I  K  S   +A   K A GA
Sbjct: 6   PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 65


>gi|88802844|ref|ZP_01118371.1| putative rRNA methylase [Polaribacter irgensii 23-P]
 gi|88781702|gb|EAR12880.1| putative rRNA methylase [Polaribacter irgensii 23-P]
          Length = 265

 Score = 44.7 bits (104), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 21/151 (13%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPS------ESAVLAKSASGA 183
           L++V + +  P NIGA+LR+A A +   +      +  Y+P+            + A G 
Sbjct: 116 LILVAEGIEKPGNIGALLRTADAANVAAVFIANPKSDLYNPNIIRASIGCVFTTQIAVGT 175

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            E I    IS LT+   ++++   Q       +     +E   +  A+ +G E  GL   
Sbjct: 176 SEEI----ISYLTENNIRLYATTLQ-------NSNEYHKENYTEASAIAVGTEDTGLTAV 224

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +E AT   ++ M G I ++NVS AAA+ L+
Sbjct: 225 FRERATQNINIPMQGEIDSMNVSVAAAIVLF 255


>gi|302328206|gb|ADL27407.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186
           R     MVL+ + DPHNI A++R+A  F    +   +    YS ++S +      G+ + 
Sbjct: 16  RTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKSIL-----KGSYKW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +           ++K+   G++    S+++   +     +  +A  LG+E  G  P T  
Sbjct: 71  MSLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPMAFYLGSEFHGNHPDTLA 130

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
            A     L   GI +++NVS A  V +
Sbjct: 131 HADYEFKLPQYGITESMNVSVAGGVLM 157


>gi|237784924|ref|YP_002905629.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757836|gb|ACR17086.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 239

 Score = 44.7 bits (104), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 10/148 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187
           R     + +++    HNIG ++R+A AF+ +   I+  KR++   + V  +      +H+
Sbjct: 86  RRFPFHVAIENFTSDHNIGTVVRTANAFAAEAVHIVGKKRWNRRGAMVTDR-----YQHL 140

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S + D LQ  H      I + +     P+E     ++  L+ G EG G+  + Q 
Sbjct: 141 --YHHSTVNDVLQWAHEHDLTVIAVDNVPGSVPVETAELPERCLLLFGQEGPGVSEEAQR 198

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     +   G  +++N   AA +A++
Sbjct: 199 GAVQTVSIAQFGSTRSINAGVAAGIAMH 226


>gi|320104128|ref|YP_004179719.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
 gi|319751410|gb|ADV63170.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
          Length = 505

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 9/137 (6%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVL--AKSASGALEHIPYIRISNLTDA 198
            DP NIGA LRSA+AF    +I T+  + P     L     A+  LE    +R       
Sbjct: 359 QDPENIGAALRSALAFGVGRVILTREAAHPFHPKALRAGGPAAARLE----LRFGPALAD 414

Query: 199 LQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           L     +    + L  D   P L+Q     + ALI G EG GL             + M 
Sbjct: 415 LCGREQFAVPRLALDRDPASPRLDQADWPARFALIAGLEGPGLA-GIATNWLQRRRIPMS 473

Query: 258 GIIKALNVSNAAAVALY 274
             I++LN + + AVALY
Sbjct: 474 PRIESLNAAVSVAVALY 490


>gi|325110483|ref|YP_004271551.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
 gi|324970751|gb|ADY61529.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
          Length = 270

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 116/274 (42%), Gaps = 27/274 (9%)

Query: 11  KIFSLKDSHYAKLR--RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           KI SL+D   A+ R  RN   Y+    F  +       E L   G+ TV + L +  R  
Sbjct: 5   KIDSLQDDRLAQYRDLRNKSHYRTTGYFVAEGWRVV--ERLLRSGL-TVDSILVSERRA- 60

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            +L+  K A  R D          V  +P +  +++VG    H G+        +P+L A
Sbjct: 61  -ELMVPKFA-DRAD----------VLILPQREAEELVGYN-FHGGVLASALKPDNPSLSA 107

Query: 129 VRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           + N   +  ++   H+  P N+G++ R A  F   GI+  +           + + G + 
Sbjct: 108 LLNGPPTAPVLCCPHLTGPDNLGSLTRLAAGFGAAGILLGEGSVDPYLRRCVRVSMGTIF 167

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSK--KPLEQ---EIKNDKIALILGAEGKGL 240
            +P     ++   LQ++ +     +  + DS+  +PL +        +  L+LG E  GL
Sbjct: 168 QMPIRTAESVLAELQQLKTEHNCDLLAAEDSEQSRPLYELPAATPGKRRVLLLGNEADGL 227

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +   ++  + M   + +LN++NAA + LY
Sbjct: 228 GQPFLKLVDAVYDIPMADGVDSLNIANAAGIFLY 261


>gi|288925042|ref|ZP_06418978.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
 gi|288338232|gb|EFC76582.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
          Length = 270

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 21/152 (13%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +S L++ LD V DP N+G I+R A  F    I+    T   Y+P    V A   S A   
Sbjct: 112 DSSLILALDGVQDPGNLGTIIRIADWFGITDIVCSEDTADAYNP--KTVQATMGSIARTK 169

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I Y  +S   ++L           G   D     EQ + +  + +I+G EGKG+   ++E
Sbjct: 170 IVYTDLSAYLESLPNETP----VYGTMLDGTDIYEQSLTHHGV-IIMGNEGKGI---SKE 221

Query: 247 TATSMAH-LHMPGIIK------ALNVSNAAAV 271
               + H L +PG  K      +LNV+ A A+
Sbjct: 222 ITRYINHRLFIPGYPKDRPSAESLNVAIATAI 253


>gi|261415409|ref|YP_003249092.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371865|gb|ACX74610.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 218

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEH 186
           R     MVL+ + DPHNI A++R+A  F    +   +    YS ++S +      G+ + 
Sbjct: 29  RTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKSIL-----KGSYKW 83

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +           ++K+   G++    S+++   +     +  +A  LG+E  G  P T  
Sbjct: 84  MSLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPMAFYLGSEFHGNHPDTLA 143

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
            A     L   GI +++NVS A  V +
Sbjct: 144 HADYEFKLPQYGITESMNVSVAGGVLM 170


>gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
          Length = 229

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + D++  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDSVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M G++++LNVS A+A+ LY  Q  
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|15835298|ref|NP_297057.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270285471|ref|ZP_06194865.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270289482|ref|ZP_06195784.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss]
 gi|301336868|ref|ZP_07225070.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14]
 gi|8163291|gb|AAF73591.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 265

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 26/158 (16%)

Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGAL 184
           +N Q   ++++    P NIGA+LR A     DG+I        Y+P+    + +S+ GA+
Sbjct: 113 KNQQPFYLIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGAV 168

Query: 185 EHIPYIRIS-NLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             +P  + S     AL +   W         QT     +  +PL         A++ G+E
Sbjct: 169 FTVPIWQASLEEVLALVREQEWKIFTTTPSTQTFYFDQNFCQPL---------AVVFGSE 219

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL P   + +     L M G   +LN+S++ A   Y
Sbjct: 220 KDGLSPSWLDGSFCNIALPMLGKADSLNLSSSVAAVAY 257


>gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
           DSM 5159]
 gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
           DSM 5159]
          Length = 271

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 65/139 (46%), Gaps = 3/139 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +++D + DP N+G +LRSA+      ++ T       +  + ++A+GA  H+P   I+ L
Sbjct: 119 LIVDRLQDPGNLGTLLRSALGAGVHAVLLTPGTVDPFNPKVVRAAAGAHFHLP---IATL 175

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +    G + +     + +  ++       A+++G+E  G+  +    A     + 
Sbjct: 176 DPVAIQREFPGLEIVVARPQALRAYDERDWTRASAVVIGSEAHGISAELARLAADEVRIP 235

Query: 256 MPGIIKALNVSNAAAVALY 274
           + G +++LN   A ++ L+
Sbjct: 236 LRGGVESLNAGVAGSIILF 254


>gi|298290777|ref|YP_003692716.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
 gi|296927288|gb|ADH88097.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
          Length = 268

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 26/218 (11%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTL 126
           LLA     A  D  A  P   P+ T     +D I G   +H+GL         P ++  +
Sbjct: 57  LLAESRVHALTDLLAQAPDDLPIYTAAQPILDGITGFH-IHRGLLGVGLRGEMPSMADLV 115

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF----------SCDGIITTKRYSPSESAVL 176
            ++ +  L++V   + +  N+G I+R+A AF          SCD         P     +
Sbjct: 116 ASLPDEALVVVPLGITNHDNVGGIMRNAAAFGADAALFDFASCD---------PLYRKAI 166

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             S  G+L  +P+ R  +    L  + + GF+ + LS   +  L    +  + AL+LGAE
Sbjct: 167 RVSVGGSLV-VPFAREGSAEAILDLLAAHGFELLALSPAGEATLGGIERPKRAALLLGAE 225

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G GL P           + M     +LNV+  + +AL+
Sbjct: 226 GPGL-PDHVLARARTVRIPMKAGFDSLNVATTSGIALH 262


>gi|116250180|ref|YP_766018.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254828|emb|CAK05902.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 271

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 12/156 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +  + LD V DP N+G I+R+A A    GII     +   S    ++  G++  +P  
Sbjct: 115 EGETWVALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPLA 174

Query: 191 RISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           R +      ++  +W  ++ G+S      + +      + +   + L++G E  GL  + 
Sbjct: 175 RATP-----EEFIAW-RKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQL 228

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 229 AREADALARIPQQGRADSLNLAVATAVMLFEARRHL 264


>gi|70950868|ref|XP_744721.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524790|emb|CAH77939.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 233

 Score = 44.7 bits (104), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 13/171 (7%)

Query: 110 VHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +  G   ET        + VR S  ++ +V+ ++    NIG I+RS VAF+   I    R
Sbjct: 1   MENGNNFETDKEREDDRNGVRTSISKMYVVIYNIGKKKNIGNIVRSCVAFNVSEIFVVGR 60

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS----SDSKKPLEQE 223
            +  E++       G++    YI+I   T+ ++         I L     ++   P+ ++
Sbjct: 61  -NKKETSFF-----GSMGTHGYIKIRYFTNMIELKQYLNNNDILLYACEITNQSIPITEQ 114

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
             N  IA + G EG G+  +       + ++   G   A LNVS + A+ L
Sbjct: 115 PFNKDIAFLFGNEGTGISEQIINMCDKIIYIPQYGNGTASLNVSVSCAIIL 165


>gi|331664149|ref|ZP_08365059.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA143]
 gi|331059948|gb|EGI31925.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA143]
          Length = 123

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 46/102 (45%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ES    ++A G  EH+  I   N+ + L      G+  +  SS+  KPL +     K+ L
Sbjct: 13  ESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVL 72

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +LG E +GL    ++       +   G +  LN+S A  V L
Sbjct: 73  VLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLL 114


>gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
 gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
          Length = 229

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +     +  +    +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGNRMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M G++++LNVS A+A+ LY  Q
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQ 162


>gi|254804971|ref|YP_003083192.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668513|emb|CBA05886.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 261

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++L
Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQADL 174

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L +     F T  L  + +  L  E      A + G EG G+     + A     + 
Sbjct: 175 EIWLARYKGRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLDRADKYVRIP 233

Query: 256 MPGIIKALNVSNAAAVALY 274
           M    ++LNV+ AA + L+
Sbjct: 234 MHDATESLNVAMAATICLF 252


>gi|312601120|gb|ADQ90375.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184
           +S+ L++L+++ +P N+G I+R+  +F  D + +       K  S S+ A+        +
Sbjct: 57  DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 109

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
            +I +++  N++D  +           L  D++  ++ ++  +K   +I G EGKG+  K
Sbjct: 110 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 167

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + A     +++P   ++LN+++A A+  +  Q
Sbjct: 168 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 199


>gi|145594428|ref|YP_001158725.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145303765|gb|ABP54347.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 314

 Score = 44.3 bits (103), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 20/187 (10%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +TV PQ      G  AV Q L L  A  L+      R  +L+ VL  + DP N G +LR+
Sbjct: 100 ETVAPQ------GLIAVCQHLDLPLATALA------RAPRLVTVLADIRDPGNAGTVLRT 147

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     ++         +  + ++++G+L H+  +R  +    +  + + G   +  +
Sbjct: 148 ADAAGAQAVVFAGTAVDPYNGKVVRASAGSLFHVDVVRAPDPLQVIADLRTAGLAVLATT 207

Query: 214 SDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQETATSMAHLHMP--GIIKALNVSN 267
                 L+      ++A     + G+E  GL    + TA + A + +P  G  ++LN++ 
Sbjct: 208 GYGADDLDDLADAGRLAAPTAWVFGSEAHGL--PVELTAAAEARVRVPLHGRAESLNLAA 265

Query: 268 AAAVALY 274
           AAAV LY
Sbjct: 266 AAAVCLY 272


>gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
 gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
          Length = 284

 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 113/296 (38%), Gaps = 48/296 (16%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRD--YKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
              ++++ + IFS K S   ++  +  +   K ++S     R   + +   + GV  V+ 
Sbjct: 5   GFAAQQQPKTIFSAKKSGMRRMISSTHNAHVKYLRSLCADPRERRREQRFVIEGVRLVAH 64

Query: 60  ALN----------NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           AL           NP      L AT    A L+     P  F    V           + 
Sbjct: 65  ALAVGAELCVVLYNPD----SLRATPAGSALLEHLLTRPGCFAANEVAISAATDTRTPQG 120

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           V   +A    P L+P         L ++LD + DP N+G +LRSA A     ++     +
Sbjct: 121 VVAAMAW---PNLAP------QPGLGLILDAIQDPGNLGTLLRSAEAAGVGWVVCAPGCA 171

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-----------LSSDSKK 218
              +  + ++A GA  ++P              H   ++ IG            ++D+  
Sbjct: 172 DPFAPKVVRAAMGAHFNLPL------------RHDLSWEDIGAEVADLPVVYAAAADAAM 219

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P  Q   N   ALI+G+E  GL       AT    + M G  ++LN + A +V L+
Sbjct: 220 PYYQADWNQPAALIIGSEAHGLSAAGMALATQYLAIPMQGRAESLNAAVAGSVMLF 275


>gi|307128795|ref|YP_003880811.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
 gi|306526324|gb|ADM96254.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
          Length = 230

 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +     +  +    L  +A+G+   +  
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTNRMRTLVSTAAGSNSWVQV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
                + DA+  + + G Q +  +  +     +E+   +   ++LG E  G+       A
Sbjct: 74  ETHRTVQDAVGHLKTQGMQILATNLSASAVDFREVDYTRPTCILLGQEKTGITADALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+A+ LY  Q  
Sbjct: 134 DQDIIIPMVGMVQSLNVSVASALILYEAQRQ 164


>gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 181

 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 70/149 (46%), Gaps = 13/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188
           L+++LD+V   +N+G++ R     +CD  +  K Y    +A      + K+A GA + + 
Sbjct: 25  LIVILDNVRSLNNVGSVFR-----TCDAFLVEKIYLCGITATPPNKEIHKTALGATDSVA 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQ 245
           +    +    ++++ + G   I +    K  +  + +   + + A+I G E KG+  +  
Sbjct: 80  WEYAEDTLQVVERLKAEGVCVISIEQAEKAVMLNDFQPKAHTQYAVIFGNEVKGVAQEVV 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  +  +   G   +LNVS +A + ++
Sbjct: 140 SLSDGVIEIPQYGTKHSLNVSVSAGIVIW 168


>gi|325132246|gb|EGC54940.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190]
 gi|325136323|gb|EGC58931.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579]
 gi|325138170|gb|EGC60741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902]
 gi|325208131|gb|ADZ03583.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           NZ-05/33]
          Length = 261

 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L +     F T  L  + +  L  E      A + G EG G+     + A     +
Sbjct: 174 LEIWLARYKGRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|94310392|ref|YP_583602.1| tRNA/rRNA methyltransferase (SpoU) [Cupriavidus metallidurans CH34]
 gi|93354244|gb|ABF08333.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
          Length = 262

 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD + D  N+G+ILRSA A        TK  + + S    ++  GA  H+  +    
Sbjct: 115 CIILDGLQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAGMGANFHLNIVEHCT 174

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L     ++       +  SS +   +        +  ++G EG G+ P+     +    +
Sbjct: 175 LEMLESRL---AVPLLATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGI 231

Query: 255 HMPGIIKALNVSNAAAVALY 274
             PG +++LNV+ A AV L+
Sbjct: 232 PQPGGLESLNVAAATAVCLF 251


>gi|325202115|gb|ADY97569.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240149]
          Length = 261

 Score = 44.3 bits (103), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L +     F T  L  + +  L  E      A + G EG G+     + A     +
Sbjct: 174 LEIWLARYKGRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|313207195|ref|YP_004046372.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312446511|gb|ADQ82866.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315022402|gb|EFT35429.1| 23S rRNA methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325335365|gb|ADZ11639.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 161

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 8/152 (5%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +++  N ++ ++L+H+  P NIG ILR+A A     ++         S  + ++   A  
Sbjct: 9   INSKHNKEISLILEHLQSPENIGLILRTAEAMGVQKVVILSDNFRQLSPRIKRTTRSAEN 68

Query: 186 HIPYIRISNLTDAL----QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           ++  I +++  +A+    +  H +  +    S D     E         ++ G E  G+ 
Sbjct: 69  NLNIIFVNSWEEAINHFEKNTHFYALEKTNKSVDY-TTFEYHF---PCVIVCGNEKDGVS 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            K  E  T+  H++M G   +LNV+ A  + L
Sbjct: 125 NKALEKCTNHLHINMYGKNTSLNVAIATGILL 156


>gi|172037390|ref|YP_001803891.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
           ATCC 51142]
 gi|171698844|gb|ACB51825.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
           ATCC 51142]
          Length = 219

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------ITTKRYSPSESAVLAKSASG 182
           R   L ++ + V+ PHN+ AI+R+     CD +       I T    P+ S V   S   
Sbjct: 18  RQPDLTVLTEDVHKPHNLSAIIRT-----CDAVGILDVHSINTTDEFPTFSQVSQGSDKW 72

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLR 241
              H       N+  A+  + S  F+        K    ++I   +  AL+LGAE  G+ 
Sbjct: 73  IFLHTH----PNIQTAINHLKSKKFKIYAAHLTDKSVDYRDIDYTQPTALLLGAEKWGV- 127

Query: 242 PKTQETATSMAHLH----MPGIIKALNVSNAAAVALYITQ 277
               E A S+   H    M G++++LNVS AAAV L+  Q
Sbjct: 128 ---SEEAASLVDGHIIIPMLGMVQSLNVSVAAAVILFEAQ 164


>gi|282898547|ref|ZP_06306535.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196415|gb|EFA71324.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
           CS-505]
          Length = 263

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 65/144 (45%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + L+ + DP N+G I+R+A A    G+  +      +   + ++++G    +      
Sbjct: 110 LALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKKQVSH 169

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL D +Q     G Q +     ++    Q   +    ++LG EG GL  +    A     
Sbjct: 170 NLKDTVQDCQRGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDELATMANIQVK 229

Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277
           + +   +++LNV+ +A++ LY  Q
Sbjct: 230 IPLSPQVESLNVAISASLILYEAQ 253


>gi|260911434|ref|ZP_05918024.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634433|gb|EEX52533.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 257

 Score = 44.3 bits (103), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 11/118 (9%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASG 182
           D V  ++L ++LD V DP N+G I+R A  F    ++    T   Y+P    V A   S 
Sbjct: 100 DCVETNELTLMLDGVQDPGNLGTIVRLADWFGIRHVVCSLDTADVYNP--KVVQATMGSI 157

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           A   + Y  +  L DAL       F   G   D      Q++    I +++G EGKGL
Sbjct: 158 ARVKVSYTPLEPLLDALPP----SFPVYGTLLDGDNIYGQQLCAHGI-IVMGNEGKGL 210


>gi|260221272|emb|CBA29671.1| hypothetical protein Csp_A13310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 66

 Score = 44.3 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +AL+LGAEG G+R  T +T   +  + M G +++LNVS A+ + LY
Sbjct: 10  VALVLGAEGDGMRQLTAKTCDQLVSIPMQGAVESLNVSVASGLCLY 55


>gi|320162047|ref|YP_004175272.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319995901|dbj|BAJ64672.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 265

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++ D++ DP N+G +LRSA A     +  T     + S  + ++  GA   +P   +S
Sbjct: 115 FVVIADNLRDPGNLGTLLRSAAAAGAQTVWLTPGTVDAFSPKVLRAGMGAHFRLPVQEVS 174

Query: 194 NLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                L+ M  +  Q  G+      +++  P         +AL++G E +G   + +   
Sbjct: 175 -----LEWMRDFRHQHPGMHLYLAEAENGTPCWDTDLTQPLALVIGGEAEGASLEMRALV 229

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + MPG  ++LN + AA + L+
Sbjct: 230 DGNITIPMPGKSESLNAAVAAGILLF 255


>gi|167586870|ref|ZP_02379258.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ubonensis Bu]
          Length = 260

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 3/139 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V D  N+G+ILRSA A     +      + + S+ + +S  GA  H   + I   
Sbjct: 116 VVLDGVQDAGNVGSILRSAAAAGVKHVFCAPGTAYAWSSKVLRSGMGA--HF-LLSIHED 172

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            +A       G       S   + +        +  + G EG G+    ++ AT    + 
Sbjct: 173 IEAGALAERIGVPVALTDSHGAQAIYDCDLAGPVVWVFGNEGAGVSAFWRDAATHRVTIP 232

Query: 256 MPGIIKALNVSNAAAVALY 274
            PG +++LNV+ AAAV L+
Sbjct: 233 QPGGMESLNVAAAAAVCLF 251


>gi|119952855|ref|YP_945064.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
           91E135]
 gi|119861626|gb|AAX17394.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
           91E135]
          Length = 232

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGIITTKR-YSPSESAVLAKSASGALEH 186
           R + L +VL+ +  P N  A +R+   +  S   II T   Y+ +   VL     GA + 
Sbjct: 45  RTNYLTLVLEDIFQPQNASATMRTIEILGLSNIHIIETNNTYTLNPGVVL-----GASKW 99

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQ 245
           I  I+   +  A   +   G++ +  S D++     +   +DK+A+  G E  GL     
Sbjct: 100 IDIIKYQCVESAFDNLKGNGYKIVATSLDNEAIFLDDFPIDDKMAIFFGTELTGLSNTVL 159

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A     + M G  ++ N+S A ++  Y
Sbjct: 160 ENADLHLKIPMYGFTQSYNLSVAVSIVFY 188


>gi|308502598|ref|XP_003113483.1| hypothetical protein CRE_26502 [Caenorhabditis remanei]
 gi|308263442|gb|EFP07395.1| hypothetical protein CRE_26502 [Caenorhabditis remanei]
          Length = 1229

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 4/153 (2%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRI 192
            L++V   V+ P+N+G I R++  F  D ++        +S   A S S    + I  ++ 
Sbjct: 1076 LIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDSNFKALSMSSENWQKIEGVKP 1135

Query: 193  SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSM 251
            +NL + LQ + S G+  I     +   +       K A+I +G E +G+           
Sbjct: 1136 ANLLEYLQGLRSQGYTVIAAEQTTDSVMMHNFVFPKKAVIVMGDEKEGVPVNLLRAVDQT 1195

Query: 252  AHLHMPGIIKALNVSNAAA--VALYITQNHFAK 282
              +   G  ++LNV   AA  +A +  Q  FAK
Sbjct: 1196 VEIKQVGHTRSLNVHVTAALMIAKFAEQVRFAK 1228


>gi|77361707|ref|YP_341282.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876618|emb|CAI87840.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 228

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 11/154 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+  HN+ AI+RSA A  C  +       P     L  + SG  ++   
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHVHAV---WPENQKWLTNNTSGGSKNWLE 72

Query: 190 IRI-SNLTDALQKMHSWG--FQTIG--LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
             +  N+ DA   M +     Q +   LS+D+     +EI   K  A+I+G E  G+  +
Sbjct: 73  THLHKNIDDAATAMRARNPDIQILATHLSTDAVDF--REIDYTKPTAIIVGQEKTGISEQ 130

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + A     + M G++++LNVS AAA+ L+  Q
Sbjct: 131 ALKHADQNIIIPMQGMVQSLNVSVAAALILFEAQ 164


>gi|144227486|gb|AAZ44231.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 251

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184
           +S+ L++L+++ +P N+G I+R+  +F  D + +       K  S S+ A+        +
Sbjct: 106 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 158

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
            +I +++  N++D  +           L  D++  ++ ++  +K   +I G EGKG+  K
Sbjct: 159 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 216

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + A     +++P   ++LN+++A A+  +  Q
Sbjct: 217 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 248


>gi|225010432|ref|ZP_03700903.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
 gi|225005261|gb|EEG43212.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 19/158 (12%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASG 182
           A + + L+++LD++   +NIG++ R+A AF     + TK Y    +A      + K+A G
Sbjct: 19  AAQKTPLILILDNIRSLNNIGSVFRTADAF-----LVTKIYLCGITAQPPHKDINKTALG 73

Query: 183 ALEHIPYIRISNLTDALQKMHS-----WGF-QTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           A E + +    N  + ++++ +     W   Q  G +   K  L+ E      ALI G E
Sbjct: 74  ATETVAWEYRENTLELVKELQAQSIAVWSVEQAQGATFLDKMSLQPE---TTYALIFGNE 130

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            KG++      +  +  +   G   +LN+S +A V ++
Sbjct: 131 VKGVQQAVVNESDGVVEIPQFGTKHSLNISVSAGVVVW 168


>gi|216263798|ref|ZP_03435792.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
 gi|215979842|gb|EEC20664.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
          Length = 218

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT---TKRYSPSESAVLAKSASGALEH 186
           R + L  VL+ +   HN  A +R+        I       +Y+ +    L     G+ + 
Sbjct: 31  RTNYLTFVLEDIVQSHNASATIRTGEILGLSDIYVIDKNNKYTLNPDITL-----GSSQW 85

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I   +  N   A+ ++ S G+  +  S S+    LE    N+K+A+  G E  GL  +  
Sbjct: 86  INLNKYKNAKFAIDRLKSDGYSIVATSLSEQSVNLENFPINNKMAVFFGTELTGLSSEVL 145

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A     + M G  ++ N+S A A+ +Y
Sbjct: 146 EAADLCVKIPMYGFTQSYNISVAVAIVMY 174


>gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 239

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 7/159 (4%)

Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAV 175
           P     +DAV   R   L +V++   DP N+ A+LR+  AF    + +      P +   
Sbjct: 28  PERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQELHVIEGPMKPYDRN- 86

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
             K +  A + +   R S+  + L  + + GF        +  + L+      K+AL+ G
Sbjct: 87  -KKISQNADKWVDVRRWSSTGECLAHLKAEGFAIYATHLGEGARTLDALSFAGKVALVFG 145

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            E +G+  +    + ++  + M G +++LNVS AAA+++
Sbjct: 146 NEHRGVSDEAVALSDAVYVIPMHGFVQSLNVSVAAAISI 184


>gi|313206009|ref|YP_004045186.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445325|gb|ADQ81680.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315022322|gb|EFT35350.1| tRNA/rRNA methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325336550|gb|ADZ12824.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 242

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 16/157 (10%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKS 179
           PT     ++ + +VLD + DP N+G I+R A  F  + I+    T   Y+P     + ++
Sbjct: 88  PTPKITEDNNINLVLDGLQDPGNLGTIIRLADWFGIEQIVCSTDTVDVYNPK----VIQA 143

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
             G+   +  +     +D  Q + +   + IG   + +   +      K  L+LG EG G
Sbjct: 144 TMGSFTRVNVV----YSDIEQFLLNSPAENIGTDMEGENLYKTNFPK-KFNLVLGNEGNG 198

Query: 240 LRPKTQETATSMAHLHMPG---IIKALNVSNAAAVAL 273
           +RP  +        +   G     ++LNVS AA + L
Sbjct: 199 MRPSVERLMKRNITIPRFGNHRATESLNVSMAAGIIL 235


>gi|71893496|ref|YP_278942.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 249

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184
           +S+ L++L+++ +P N+G I+R+  +F  D + +       K  S S+ A+        +
Sbjct: 104 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 156

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
            +I +++  N++D  +           L  D++  ++ ++  +K   +I G EGKG+  K
Sbjct: 157 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 214

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + A     +++P   ++LN+++A A+  +  Q
Sbjct: 215 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 246


>gi|326673098|ref|XP_001921874.3| PREDICTED: probable methyltransferase TARBP1 [Danio rerio]
          Length = 1083

 Score = 44.3 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 9/171 (5%)

Query: 117  ETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
            E  P L     A+R     S LL+V   ++ P N+G + R+   F    ++       ++
Sbjct: 908  EQEPELMAQQRALRLGKLTSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVND 967

Query: 173  SAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKI 229
                A S S  L  +P + +  + L+D LQ   S G+  IG+   S  + L+     +K 
Sbjct: 968  KQFQALSVSSEL-WLPMMEVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKS 1026

Query: 230  ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
             L+LG E +G+     +       +   G+ ++LNV  +AA+ ++  T+ H
Sbjct: 1027 LLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQH 1077


>gi|156741421|ref|YP_001431550.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
           13941]
 gi|156232749|gb|ABU57532.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
           13941]
          Length = 235

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 40/194 (20%)

Query: 98  PQTIDKIVGKEAVH-QGL-ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA- 154
           PQ I  +   + VH QG+ AL   P + P         L++V+D V DP N+G +LRSA 
Sbjct: 54  PQVIASV--ADTVHPQGVVALARWPQIPPG-----KPGLILVIDAVQDPGNLGTLLRSAE 106

Query: 155 ---VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
              VA +   + T   Y+P     + +SA GA     +IR+S     +++   W    IG
Sbjct: 107 AVGVAQTLCSVGTVDVYAPK----VVRSAMGA-----HIRLS-----IEQDVRW--DEIG 150

Query: 212 ---------LSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                     ++D  ++ P          AL++G E  GL    +  AT    + M G  
Sbjct: 151 ERLADVDHVYAADPHARMPYYAADWRQPSALLVGNEAHGLSEAARRLATKPITIPMCGRA 210

Query: 261 KALNVSNAAAVALY 274
           ++LNV+ AA+V L+
Sbjct: 211 ESLNVAVAASVILF 224


>gi|72080483|ref|YP_287541.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 249

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184
           +S+ L++L+++ +P N+G I+R+  +F  D + +       K  S S+ A+        +
Sbjct: 104 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 156

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
            +I +++  N++D  +           L  D++  ++ ++  +K   +I G EGKG+  K
Sbjct: 157 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 214

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + A     +++P   ++LN+++A A+  +  Q
Sbjct: 215 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 246


>gi|224076560|ref|XP_002196211.1| PREDICTED: similar to MGC84529 protein [Taeniopygia guttata]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C+ ++ TK    P E  VL ++  GA   +P I
Sbjct: 206 LLLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVL-RAGMGAHFRVPII 262


>gi|144575297|gb|AAZ53518.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 251

 Score = 44.3 bits (103), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184
           +S+ L++L+++ +P N+G I+R+  +F  D + +       K  S S+ A+        +
Sbjct: 106 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 158

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
            +I +++  N++D  +           L  D++  ++ ++  +K   +I G EGKG+  K
Sbjct: 159 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 216

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + A     +++P   ++LN+++A A+  +  Q
Sbjct: 217 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 248


>gi|254478160|ref|ZP_05091542.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
 gi|214035889|gb|EEB76581.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
          Length = 198

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 11/151 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA---VLAKSASGALEH 186
           R    ++ +D V + HN  AILR+     CD +   + Y  SE+     + ++ S A   
Sbjct: 11  RQKDFVVFVDDVTNEHNFSAILRT-----CDAVGVMRVYYFSEAKKGIEINEAVSMAANR 65

Query: 187 IPYI-RISNLTDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
             +I R+ +   A++++      Q +    D      +EI   K   L++G E KG+   
Sbjct: 66  WLFIERVYDREKAIKELKERENLQVVVTWLDESSKDFREIDYTKPTLLVVGNELKGVSED 125

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               A     + M G++++LNVS A  + LY
Sbjct: 126 ILNLADERIVIPMMGMVQSLNVSVATGIILY 156


>gi|54114167|gb|AAV29717.1| NT02FT1402 [synthetic construct]
          Length = 250

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 24/155 (15%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +   ++VLD + DP NIG ILR+A+A     +I    T   ++P       ++  GA   
Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKA----IRAGMGAQFS 156

Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + +  I+NL        LQ+   W   T   G+S  +K     E K     L+ G E  G
Sbjct: 157 LKFGYITNLAKLKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +    T +  L     I++LNV+ AA + L+
Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242


>gi|54020405|ref|YP_115751.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|53987578|gb|AAV27779.1| rRNA methylase [Mycoplasma hyopneumoniae 232]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 18/154 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------TKRYSPSESAVLAKSASGAL 184
           +S+ L++L+++ +P N+G I+R+  +F  D + +       K  S S+ A+        +
Sbjct: 107 DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSGVDLYNVKTISASKGAIF-------M 159

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
            +I +++  N++D  +           L  D++  ++ ++  +K   +I G EGKG+  K
Sbjct: 160 ANIYFLK--NISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKK 217

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + A     +++P   ++LN+++A A+  +  Q
Sbjct: 218 LNKLADK--KIYIPINFESLNIASANAIFCHFFQ 249


>gi|148679865|gb|EDL11812.1| mCG129058 [Mus musculus]
          Length = 1534

 Score = 44.3 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190
            S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P + 
Sbjct: 1375 SRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSDRQFQHLSVS-AEQWLPLVE 1433

Query: 191  -RISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R S L D LQ+  + G+  IG+   ++   L Q    +K  L+LG E +G+     +  
Sbjct: 1434 VRPSQLMDYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQL 1493

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1494 DVCVEIPQQGIIRSLNVHVSGALLIW 1519


>gi|150025910|ref|YP_001296736.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772451|emb|CAL43933.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 262

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 2/158 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           +T P L   L  +  + L+++ +    P NIGA+LR+A A + D +I     S   +  +
Sbjct: 99  KTKPFLLSDLK-LSQTPLILIAEAPEKPGNIGALLRTADAANLDAVIIANPKSDLYNPNI 157

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S+ G L     I      + +  +          +  +  P   +      AL++G E
Sbjct: 158 VRSSVGCL-FTTQIATGTTQEIITYLKENKINFYCATLQNATPYHTQDYTPPTALVVGTE 216

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL  + +  AT    + M G I ++NVS AAA+ ++
Sbjct: 217 ATGLTQEWRNNATQNIIIPMQGEIDSMNVSVAAAILIF 254


>gi|160900365|ref|YP_001565947.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1]
 gi|160365949|gb|ABX37562.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1]
          Length = 263

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 4/148 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R     +VLD V D  N+G+ILRSA AF    ++  K  +   S  + ++  GA   + 
Sbjct: 111 IRAGVATVVLDRVQDAGNVGSILRSAAAFGFSQVVALKGTAALWSQKVLRAGMGAHFGLQ 170

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  ++  D    + + G   I  SS   + +         A  +G EG+G+     + A
Sbjct: 171 LVESASSED----LDALGLPLIVTSSHQGELIHNAALPWPCAWAMGHEGQGVGEALMQRA 226

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +  PG  ++LNV+ AAA+ L+ +
Sbjct: 227 AQHVRIGQPGGEESLNVAAAAAICLHAS 254


>gi|56708186|ref|YP_170082.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670657|ref|YP_667214.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|254370673|ref|ZP_04986678.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|56604678|emb|CAG45741.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320990|emb|CAL09124.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568916|gb|EDN34570.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|282159402|gb|ADA78793.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 250

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 24/155 (15%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +   ++VLD + DP NIG ILR+A+A     +I    T   ++P       ++  GA   
Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKA----IRAGMGAQFS 156

Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + +  I+NL        LQ+   W   T   G+S  +K     E K     L+ G E  G
Sbjct: 157 LKFGYITNLAKLKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +    T +  L     I++LNV+ AA + L+
Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242


>gi|332886049|gb|EGK06293.1| hypothetical protein HMPREF9456_00167 [Dysgonomonas mossii DSM
           22836]
          Length = 263

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPS--ESAV-----LAKS 179
           ++  L++L+ V  P N+GA+LR+A A   D +I     T  Y+P+   S+V     +  +
Sbjct: 113 DTPFLIILESVEKPGNLGAVLRTADAAQADAVIVCDPATDIYNPNAIRSSVGCVFTVQTA 172

Query: 180 ASGALEHIPYIRISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
              + E + Y+R  N+     ++++  W +Q     +D  KP          A+++G E 
Sbjct: 173 VCTSQEALSYLRSRNIKAYAAELNASQW-YQ----DTDFTKP---------SAIVMGTEA 218

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL     + A     + M G I +LNVS + A+  +
Sbjct: 219 DGLTLFWLDNADYRVKIPMRGKIDSLNVSVSTAILTF 255


>gi|323457320|gb|EGB13186.1| hypothetical protein AURANDRAFT_6212 [Aureococcus anophagefferens]
          Length = 147

 Score = 44.3 bits (103), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 2/143 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++LD +    N+G ++R+        +      +P   AVL K+A  A   +   R 
Sbjct: 1   DLTVILDGLRSGENVGNVIRTCETAGARVLCCGTTPAPPTPAVL-KAACNAAPFVDVRRE 59

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +  DA++ +   G     L ++    PL        +AL+ G E  G+ P        +
Sbjct: 60  PSTLDAVRALQGRGVAVYALETTRGSVPLYDADLPAPLALVFGNELVGVHPDVLAACDGV 119

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             L   G+  +LNV++ AA A+Y
Sbjct: 120 VSLPTFGVKNSLNVASCAAAAVY 142


>gi|241668442|ref|ZP_04756020.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876975|ref|ZP_05249685.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842996|gb|EET21410.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 252

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 14/147 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
            ++VLD + DP NIG ILR+A+A     I+    T   ++P       ++  GA   + +
Sbjct: 105 FILVLDRIQDPGNIGTILRTAIAVGLTEIVLINGTVDPFNPKA----IRAGMGAQFSLKF 160

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               NL+ A++   +   + I L++  +      +E K     L+ G E  G+   +   
Sbjct: 161 RYFENLS-AVRNYPTLKERKIWLTTPHEGVSCYSKEFKLSNSVLVFGEEANGIEDFSVGE 219

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
            T +  L     I++LNV+ AA + L+
Sbjct: 220 KTMIPTLSN---IESLNVAQAATIYLF 243


>gi|261749221|ref|YP_003256906.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497313|gb|ACX83763.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 259

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGALEHIPYIR 191
            +++LD +  P N+G++LR A A     II    K Y  + + +     S     I   +
Sbjct: 110 FILILDGIEKPGNLGSMLRIADAVGVHFIILCNIKTYIYNPNIIRCSLGSVFTNKILIEK 169

Query: 192 ISNLTDALQK----MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             ++   LQK    +   GF       +    L +   + ++A++LG+E KG+ P     
Sbjct: 170 KKSIISWLQKKKIEIVVTGFH------EKAIQLYRTKFSSRLAIVLGSENKGVSPIWLNI 223

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A  +  + M G + +LNVSNA ++ +Y
Sbjct: 224 AHKIVTIPMFGDMDSLNVSNAMSIMIY 250


>gi|222147334|ref|YP_002548291.1| rRNA methylase [Agrobacterium vitis S4]
 gi|221734324|gb|ACM35287.1| rRNA methylase [Agrobacterium vitis S4]
          Length = 294

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 85/206 (41%), Gaps = 25/206 (12%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL---------------------- 135
           PQ +++I  +   H G+ LE +  +  ++    N Q++                      
Sbjct: 84  PQ-VERIAARTVAHGGMVLEVSEKVMASITRKDNPQMVAGVFDQRWKALKDVSLTEGETW 142

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V DP N+G I+R+A A    G++     +   +    ++  G++  +P ++ + +
Sbjct: 143 VALDRVRDPGNLGTIIRTADAAGASGVMLIGDSTDPFAMETVRATMGSIFALPLVK-TTV 201

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D L      G   +    + +      + K   + +++G E  GL  +    A  +A +
Sbjct: 202 ADFLGWKTKAGVSVVATHLAGAVDYRTVDYKRRPVVVLMGNEQSGLPEELASRADMLARI 261

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
              G+  +LN++ A  V L+  + H 
Sbjct: 262 PQAGLADSLNLAVATGVMLFEARRHL 287


>gi|218675158|ref|ZP_03524827.1| probable RNA methylase protein [Rhizobium etli GR56]
          Length = 274

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 13/196 (6%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL------ETAPLLSPTLDAVRNSQLLMVL 138
             P   PV       ++ IVG   +H+G LAL      + A LL    DA+    L++V 
Sbjct: 76  RFPADVPVYVAEADALEGIVGFH-LHRGVLALGRREERDEAALL----DALPERALVLVG 130

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             +++  N G++ R+A AF  D ++  +           + + G++  +P+ R     D 
Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALDL 190

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   GF    LS   K  +       ++AL++G EG+GL P         A +    
Sbjct: 191 LLALAERGFAIWTLSPHGKTDIRVIPAAARMALVVGTEGEGL-PAALLARFQSARIPQSD 249

Query: 259 IIKALNVSNAAAVALY 274
            + +LN + A  +AL+
Sbjct: 250 ELDSLNAATATGIALF 265


>gi|196011996|ref|XP_002115861.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
 gi|190581637|gb|EDV21713.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
          Length = 328

 Score = 43.9 bits (102), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 34/170 (20%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS- 193
           ++ D+V DP N+G I+RSA A +C  +I T   +      + +SASG+   +P Y  I+ 
Sbjct: 146 LICDNVRDPGNLGNIIRSAAAANCSSVILTHGCADPWQPKVMRSASGSQFQLPIYYDITW 205

Query: 194 ---NLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDK---------------IA 230
              + + AL+ M+   F       D  + L+       I N+K                 
Sbjct: 206 GQISCSKALKSMN---FYLAECMRDQYQYLQNTRSTSHISNEKKLVPYYDIDWTHKSGAL 262

Query: 231 LILGAEGKGLRPKTQETATSMA----HLHMPGI--IKALNVSNAAAVALY 274
           L +G E  G +  T  + T        + +P    I++LNV+ AA++ L+
Sbjct: 263 LAIGNEAHGFKLNTTASVTECCDITQRITIPLCHRIQSLNVATAASIILF 312


>gi|289741955|gb|ADD19725.1| SPOU rRNA methylase family protein [Glossina morsitans morsitans]
          Length = 388

 Score = 43.9 bits (102), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 28/170 (16%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGAL-------- 184
           + +V D++ DP+N+G+I+R+  A  C   +IT     P ES  L     G          
Sbjct: 216 ITVVCDNIRDPNNLGSIIRTCAALPCLQVVITIGCCDPWESKSLRGGCGGHFRIQIHDDV 275

Query: 185 --EHIPYIRISNLTDALQKMHSWGF---QTIGLSSDSKKPLEQ---EIKNDKIALILGAE 236
             E +P +  + L D     + W F     I  S+     L+    E       +I+G E
Sbjct: 276 HWEEVPLVIPAELAD-----NCWVFIAENNISKSAGLTNVLDYTNIEQTGSHSVVIIGGE 330

Query: 237 GKGLRPKTQETATSMAH----LHMPGI--IKALNVSNAAAVALYITQNHF 280
             G+  +  +   ++ +    LH+P    I +LNV++A  + LY  + H 
Sbjct: 331 SHGVSTEAYQFMQTVGNRGRCLHIPVAEGIDSLNVASALTLILYELRKHV 380


>gi|120434752|ref|YP_860439.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117576902|emb|CAL65371.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 246

 Score = 43.9 bits (102), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKS 179
           P    ++   L +VLD V DP N+G I+R    F  + +I    T   Y+P    V A  
Sbjct: 87  PVKRDLKIGDLTVVLDGVRDPGNLGTIIRLCDWFGIENLICSLDTVDCYNP--KVVQASM 144

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S     I Y  + N+  A + +  +G    G +  SKK      K DK  +++G E  G
Sbjct: 145 GSLTRVEIFYSDLVNVLGAHKNIPVFGTMLNGENIYSKK------KPDKALIVMGNEANG 198

Query: 240 LRPKTQETATSMAHLHMPGIIK---ALNVSNAAAVAL 273
           +  + Q   ++   +   G I+   +LNV+ A ++ L
Sbjct: 199 ISEEIQALISNKITIPQFGEIQETESLNVATATSIIL 235


>gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 283

 Score = 43.9 bits (102), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P
Sbjct: 119 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKA----VRASVGSLFHLP 174

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  +   G + +         L+ E+    +    A + G E  GL  +T
Sbjct: 175 VAVGVTVERAVGGLRDAGVRVLAADGAGADDLDDELDRGTMGTPTAWVFGNEAWGLPEET 234

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A ++  + + G  ++LN++ AAAV LY
Sbjct: 235 RALADAVVRVPIHGRAESLNLATAAAVCLY 264


>gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42]
 gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42]
          Length = 286

 Score = 43.9 bits (102), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 12/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  +  + LD V DP N+G I+R+A A    GII     +   S    ++  G++  +P 
Sbjct: 129 QEGETWVALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATMGSVFAVPV 188

Query: 190 IRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            R +      ++  +W  ++ G+S      + +      + +     L++G E  GL  +
Sbjct: 189 ARATP-----EEFLAW-RKSAGVSIVATHLAGAVDYRTIDYRKKPTVLLMGNEQSGLPDQ 242

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 243 LAREADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|82541768|ref|XP_725101.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479981|gb|EAA16666.1| RNA methyltransferase, TrmH family, putative [Plasmodium yoelii
           yoelii]
          Length = 227

 Score = 43.9 bits (102), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 13/149 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +++ +++ ++    NIG I+RS VAF+   I    R +  E++       G++    YIR
Sbjct: 17  TKMYVIIYNIGKKKNIGNIVRSCVAFNVSEIFVVGR-NKKETSFF-----GSMGTHGYIR 70

Query: 192 I---SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQ 245
           I   SN+ +  + ++       G   ++   P+ ++  +KN   A + G EG G+  +  
Sbjct: 71  IRYFSNMIELKEYLNDNNILLYGCEITNQSIPITKQPFVKNKDTAFLFGNEGTGISDQII 130

Query: 246 ETATSMAHLHMPGI-IKALNVSNAAAVAL 273
           +    + ++   G  I +LNVS + A+ L
Sbjct: 131 KMCDKIIYIPQYGNGIASLNVSVSCAIIL 159


>gi|256379474|ref|YP_003103134.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255923777|gb|ACU39288.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 282

 Score = 43.9 bits (102), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 13/174 (7%)

Query: 112 QGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           QG+     P+  P LDA    +++L+ VL  V DP N G ++R A A   D ++      
Sbjct: 107 QGVVAVCDPVEVP-LDAALTPSARLVAVLHGVGDPGNAGTVVRVADAAGADAVVFAGDSV 165

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKND- 227
              +    ++++G++ H+P  R  +  D      + G + +     + + L   +++ D 
Sbjct: 166 DVHNGKCVRASTGSVFHLPIARARSAEDVFAACRAAGLRLVAADGYATEDLVTADLRGDL 225

Query: 228 --KIALILGAEGKGLRPKTQETATSM-AHLHMP--GIIKALNVSNAAAVALYIT 276
               A + G+E  GL     E  TS+   L +P  G  ++LN++ AAAV LY +
Sbjct: 226 AHPTAWVFGSEAHGL---PDEVVTSLDGALKVPLYGGAESLNLATAAAVCLYAS 276


>gi|225024569|ref|ZP_03713761.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
           23834]
 gi|224942720|gb|EEG23929.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
           23834]
          Length = 258

 Score = 43.9 bits (102), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 2/139 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL+ + DP NIG ILRSA A     ++ +   + + S  + ++  GA   +      +L
Sbjct: 115 VVLERIQDPGNIGTILRSAAAAGVGQVVLSADCADAWSPKVLRAGMGAHFALRLFVEPDL 174

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               ++ H     T  L  +S    + +++    A + G EG G+       A+ + H+ 
Sbjct: 175 AAWRERCHVPLLAT-ALHRNSVSLYDCDLRAPA-AWLFGNEGAGVSETMLAAASRLVHIP 232

Query: 256 MPGIIKALNVSNAAAVALY 274
           M    ++LNV+ AA V L+
Sbjct: 233 MAVQTESLNVAMAATVCLF 251


>gi|154488654|ref|ZP_02029503.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
           L2-32]
 gi|154082791|gb|EDN81836.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
           L2-32]
          Length = 290

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 15/146 (10%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-- 197
            V DP N G ++RSA A  C G++         +  + +S +G+L H+P + +   TD  
Sbjct: 136 QVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG--TDEY 193

Query: 198 ----ALQKMHSWGFQTIGLSSDSKKPLE------QEIKNDKIALILGAEGKGLRPKTQET 247
               A + +  +     G  +   +PL       Q +   K  L  G E +GL     E 
Sbjct: 194 FDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVL-FGNEARGLTQDVLER 252

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + + G  ++LN+  +AAV L
Sbjct: 253 VDRIVSIPIYGKAESLNLGTSAAVML 278


>gi|289704520|ref|ZP_06500955.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
           luteus SK58]
 gi|289558778|gb|EFD52034.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
           luteus SK58]
          Length = 298

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 4/154 (2%)

Query: 125 TLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           T++AV   ++L  VL  V DP N G ++R+A A   D ++ T       +  + +S +G+
Sbjct: 134 TVEAVLEEARLAAVLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRSTAGS 193

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           L H+P +       A     + G Q     G  +D    L   +     A + G E +GL
Sbjct: 194 LFHLPVVTAVPAEAAAAAARAAGLQVWAADGYGADRLDALAPGLVAAPTAWLFGNEAQGL 253

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  A     + + G  ++LNV  AA V LY
Sbjct: 254 DDGELALADRRVAVPLYGAAESLNVGTAATVCLY 287


>gi|254786166|ref|YP_003073595.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
           T7901]
 gi|237686905|gb|ACR14169.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
           T7901]
          Length = 228

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 9/154 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187
           R   L ++ D V+   N+ AI R+     CD  GI T     P +        S + E  
Sbjct: 16  RQPDLTVITDEVHKGRNLSAITRT-----CDAVGIDTIHCVMPEDGYQTYNGTSASAEKW 70

Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             ++  S+++  +  +   GFQ +  +  D+             AL+LGAE KG+ P+  
Sbjct: 71  VAVQHHSSISAPVNDLKREGFQLVAANLGDNTLDYRNVDYTKPTALVLGAEVKGVSPEAA 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   + M G++++ NVS AAA+ L   Q+ 
Sbjct: 131 AAVDYNVTVPMVGMVESFNVSVAAAIILMEAQHQ 164


>gi|254374182|ref|ZP_04989664.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
 gi|151571902|gb|EDN37556.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
          Length = 250

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 25/163 (15%)

Query: 124 PTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAK 178
           P L+ +  S   ++VLD + DP NIG ILR+A+A     +I    T   ++P       +
Sbjct: 93  PKLEELSFSDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IR 148

Query: 179 SASGALEHIPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIAL 231
           +  GA   + +  I+NL +      LQ+   W   T   G+S  +K     + K     L
Sbjct: 149 AGMGAQFSLKFSYITNLAELKNIAKLQQRKIW-LTTPHQGVSCYAK-----DFKLANSIL 202

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + G E  G+   +    T +  L     I++LNV+ AA + L+
Sbjct: 203 VFGEEANGIEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242


>gi|167753955|ref|ZP_02426082.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
 gi|167658580|gb|EDS02710.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
          Length = 228

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 77/169 (45%), Gaps = 11/169 (6%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RY 168
           + ++ E   +L  TLD+ R   + ++ ++     N  A++R   AF    I T +   ++
Sbjct: 21  EFMSEERRQVLQRTLDS-RTRYMTILTENTYHAQNASALVRHCEAFGVQDIHTIETRCKF 79

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKN 226
           +P+ + V      G  + I   R     +A+  +   G++ +  +   + K P   ++  
Sbjct: 80  NPNVNIV-----RGTDKWIDLHRHRTTAEAIADLKGRGYRIVATTPHREDKTPETFDVAA 134

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L+ G E  G+  +    A     + M G++++LNVS +AA+ +Y+
Sbjct: 135 SPFVLVFGTEHAGISDEIVAAADEFLRIPMCGMVESLNVSASAAILIYM 183


>gi|160884561|ref|ZP_02065564.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
 gi|293373263|ref|ZP_06619623.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|156110300|gb|EDO12045.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
 gi|292631786|gb|EFF50404.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 254

 Score = 43.9 bits (102), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            Q LA+   P  +   +AVR+S L + LD V DP N+G I+R A  F  + II ++    
Sbjct: 83  QQVLAIFEQPQYTLDPEAVRSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G +  +  +  ++L D ++ +        G   D K   EQ +  + + 
Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPVFGTFLDGKNMYEQPLSANGL- 197

Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271
           +++G EG G+    +E AT +   L++P         ++LNV+ A AV
Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPAGQETSESLNVAIATAV 242


>gi|330862873|emb|CBX73011.1| uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           enterocolitica W22703]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIR 191
            ++ L+ V +PHN+G I+R+   F  +G++      P+  ES    ++A G  EHI  I 
Sbjct: 221 CVLALEDVGNPHNLGGIMRTCAHFGINGVLLQ---DPAMLESGAAVRTAEGGAEHIKAIN 277

Query: 192 ISNLTDALQKMHSWGF 207
             +    L      G+
Sbjct: 278 ADDFLSVLDTFRKAGY 293


>gi|325962866|ref|YP_004240772.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468953|gb|ADX72638.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 26/166 (15%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL  V DP N G +LR+A +   D ++ T      Y+P       +S +G+L H+P
Sbjct: 130 RLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTASSVDIYNPKA----VRSTAGSLFHLP 185

Query: 189 YIRISNLTDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKI---------------A 230
            +  +++ +      + G   +   G  S +   L+ E    ++               A
Sbjct: 186 VVLGADVGELAAACRARGIGILAADGYGSLNLDTLQDESARRRLTGAGPSSTYALEQPTA 245

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + G E +GL  +    A     + + G  ++LN+  AA V LY +
Sbjct: 246 WLFGNEAQGLSEEELALADHRVAVPVYGSAESLNLGTAATVCLYAS 291


>gi|237713266|ref|ZP_04543747.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406593|ref|ZP_06083142.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647301|ref|ZP_06724896.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294809639|ref|ZP_06768330.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446733|gb|EEO52524.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355296|gb|EEZ04387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637377|gb|EFF55800.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294443158|gb|EFG11934.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
          Length = 254

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            Q LA+   P  +   +AVR+S L + LD V DP N+G I+R A  F  + II ++    
Sbjct: 83  QQVLAIFEQPQYTLAPEAVRSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G +  +  +  ++L D ++ +        G   D K   EQ +  + + 
Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPVFGTFLDGKNMYEQPLTANGL- 197

Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271
           +++G EG G+    +E AT +   L++P         ++LNV+ A AV
Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPAGQETSESLNVAIATAV 242


>gi|119025947|ref|YP_909792.1| rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765531|dbj|BAF39710.1| possible rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
          Length = 290

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 15/146 (10%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-- 197
            V DP N G ++RSA A  C G++         +  + +S +G+L H+P + +   TD  
Sbjct: 136 QVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAGSLFHLPVVSMG--TDEY 193

Query: 198 ----ALQKMHSWGFQTIGLSSDSKKPLE------QEIKNDKIALILGAEGKGLRPKTQET 247
               A + +  +     G  +   +PL       Q +   K  L  G E +GL     E 
Sbjct: 194 FDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVL-FGNEARGLTQDVLER 252

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + + G  ++LN+  +AAV L
Sbjct: 253 VDRIVSIPIYGKAESLNLGTSAAVML 278


>gi|320102938|ref|YP_004178529.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644]
 gi|319750220|gb|ADV61980.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644]
          Length = 284

 Score = 43.9 bits (102), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 12/153 (7%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++V   + +P N+GA++R        G++         S  + + + GA    P +  S
Sbjct: 126 VVLVCPALFNPENLGALIRLGDVMGAVGLVVGPGCPDPLSRRVTRVSMGASLAFPVVEAS 185

Query: 194 NLTDALQKMHSWGFQTIGLS------------SDSKKPLEQEIKNDKIALILGAEGKGLR 241
           N+  AL  +   G   +  +              +  P ++    D++AL+LG+E  GL 
Sbjct: 186 NVAAALDYLAGLGDHLLAAAVCEPAGPSALKPGATVVPFDRITWPDRVALLLGSEAHGLE 245

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P   + A  +  + M     +LN++ A  + LY
Sbjct: 246 PCWVQRADQLTTIVMRPGADSLNLAVATGILLY 278


>gi|293343446|ref|XP_002725485.1| PREDICTED: rCG50916-like [Rattus norvegicus]
          Length = 1500

 Score = 43.9 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190
            S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P + 
Sbjct: 1341 SRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSDRQFQHLSVS-AEQWLPLVE 1399

Query: 191  -RISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R S L D LQ+  + G+  IG+   ++   L Q    +K  L+LG E +G+     +  
Sbjct: 1400 VRPSQLVDYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPVNLIQQL 1459

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1460 DVCVEIPQQGIIRSLNVHVSGALLIW 1485


>gi|298484410|ref|ZP_07002568.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|299145878|ref|ZP_07038946.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
 gi|298269434|gb|EFI11037.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|298516369|gb|EFI40250.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
          Length = 254

 Score = 43.9 bits (102), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            Q LA+   P  +   +AVR+S L + LD V DP N+G I+R A  F  + II ++    
Sbjct: 83  QQVLAIFEQPQYTLDPEAVRSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G +  +  +  ++L D ++ +        G   D K   EQ +  + + 
Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPVFGTFLDGKNMYEQPLSANGL- 197

Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271
           +++G EG G+    +E AT +   L++P         ++LNV+ A AV
Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPAGQETSESLNVAIATAV 242


>gi|282882505|ref|ZP_06291126.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
 gi|281297647|gb|EFA90122.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
          Length = 247

 Score = 43.9 bits (102), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + LD ++D  N+G I+R+A AF+  G+I ++      +    ++   ++  +P   +  
Sbjct: 109 FLYLDKISDAGNMGTIIRTADAFNLSGVIISEYSCDIYNPKTIRATMASIFRVPIYFLKE 168

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             D L K +   F+ I  + +  KP+++   +  + L++G E  G+  K  E A     +
Sbjct: 169 --DELIKNN---FKIIVSALEDSKPIKECDLSGDLILVIGNEAHGVSQKILERANLKVKI 223

Query: 255 HMPGIIKALNVSNAAAVALY 274
            +   + +LN   AA +  Y
Sbjct: 224 PIRDSVDSLNAGVAAGIFAY 243


>gi|307106389|gb|EFN54635.1| hypothetical protein CHLNCDRAFT_17312 [Chlorella variabilis]
          Length = 195

 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 20/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS----CDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++  +V+  HN+G + R A AF+    C  ++ +++++          A G+ E++ +  
Sbjct: 2   LITYNVSKKHNLGTLARCATAFNVRQLC--LVGSRQFNTF-------GAHGSSEYVDFCH 52

Query: 192 ISNLTDALQKM-HSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + L +  Q +  + G   +G+   D  +P+ +       A +LG EG+GL  K      
Sbjct: 53  YNTLDECCQDLKDNKGCTVVGVEIIDGAQPVHRFPFRGNTAFMLGNEGQGLNEKQLALCD 112

Query: 250 SMAHLHMPGIIKA-LNVSNAAAVALYITQNHFA 281
           S  ++   G   A LNV+ AA++ L+    HFA
Sbjct: 113 SFLYIPQYGAGTASLNVAVAASIVLH----HFA 141


>gi|78189054|ref|YP_379392.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
 gi|78171253|gb|ABB28349.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
          Length = 184

 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 2/160 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E A LL     A     ++++L ++    N+G++ R+A +   + II +   +      +
Sbjct: 17  EMARLLPEEYAASPCHPIVLMLHNIRSMWNVGSMFRTADSAGIERIILSGYTATPPRKEI 76

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILG 234
           +K+A GA E +P+    +    ++K+ + G +   L  +  S+      + +  I L++G
Sbjct: 77  SKTALGADESVPWSYTEDAYKTVRKLQAEGVKVCALEIAEGSRAHSSICMADFPICLLVG 136

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E  GL  +  +   ++  +   G   +LNV+ AA VAL+
Sbjct: 137 NEVDGLDDELLQACDAVLEIAQYGTKHSLNVAVAAGVALF 176


>gi|237718577|ref|ZP_04549058.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452037|gb|EEO57828.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|295084275|emb|CBK65798.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
          Length = 254

 Score = 43.5 bits (101), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            Q LA+   P  +   +AVR+S L + LD V DP N+G I+R A  F  + II ++    
Sbjct: 83  QQVLAIFEQPQYTLDPEAVRSS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G +  +  +  ++L D ++ +        G   D K   EQ +  + + 
Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPVFGTFLDGKNMYEQPLSANGL- 197

Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271
           +++G EG G+    +E AT +   L++P         ++LNV+ A AV
Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPAGQETSESLNVAIATAV 242


>gi|300727201|ref|ZP_07060617.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14]
 gi|299775439|gb|EFI72033.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14]
          Length = 257

 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 76/153 (49%), Gaps = 9/153 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + LD V DP N+G I+R A  F  + I+ +   +   +  + ++  G++  +  I  
Sbjct: 105 KLTLALDDVQDPGNLGTIIRIADWFGIENIVCSMDTADIYNPKVIQATMGSIARVK-ITY 163

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           ++L   L+++        G   D K   +QE+ +  + +I+G EGKG+ P   + A  + 
Sbjct: 164 TDLKQYLKQIDK-STPIYGTLLDGKNIYQQELSSHGL-IIMGNEGKGISP---DIAAMVT 218

Query: 253 H-LHMPGIIKALNVSNA--AAVALYITQNHFAK 282
           H L +P   +  + +++   A+A  IT + F +
Sbjct: 219 HKLLIPNYPEGKDTADSLNVAIATAITCSEFRR 251


>gi|121634880|ref|YP_975125.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
 gi|120866586|emb|CAM10337.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
 gi|325142380|gb|EGC64789.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           961-5945]
 gi|325198323|gb|ADY93779.1| RNA methyltransferase, TrmH family [Neisseria meningitidis G2136]
          Length = 261

 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L       F T  L  + +  L  E   +  A + G EG G+     + A     +
Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQVVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|282880630|ref|ZP_06289336.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
 gi|281305525|gb|EFA97579.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
          Length = 176

 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD V   +N+G++ RS  AF  + +      +      + K+A G  + + +   +
Sbjct: 25  LIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGGEDSVAWRYFA 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
           + T+A++++    +    +         Q +   ++ + A++ G E KG+   T +    
Sbjct: 85  SATEAVEELKRNEYFVYSIEQVEGSTKLQHLTLNRHQRYAVVFGNEVKGVNQTTVDACNG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LNVS  A + ++
Sbjct: 145 CLEIPQFGTKHSLNVSVTAGIVVW 168


>gi|297745670|emb|CBI40924.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 10/159 (6%)

Query: 123  SPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAK 178
            S  ++ +R+SQ   ++V   ++   N+  + R+   F   G  I  T      +  +++ 
Sbjct: 1039 SVAMERIRSSQQHFILVASLIDRIPNLAGLARTCEVFKAAGLAIADTNILHDKQFQLISV 1098

Query: 179  SASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGA 235
            +A    + +P + +  S++   L+K    GF  +GL   +   PL++ I   KI L+LG 
Sbjct: 1099 TAE---KWVPIVEVPVSSVKVFLEKKKQEGFSILGLEQTANSVPLDKYIFPKKIVLVLGR 1155

Query: 236  EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E +G+         +   +   G++++LNV  + A+AL+
Sbjct: 1156 EKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALW 1194


>gi|170692157|ref|ZP_02883320.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
 gi|170142587|gb|EDT10752.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
          Length = 262

 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 19/257 (7%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +  +  L G H  SA L+   +     + T+ AL   +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGQPEM-CIVTEGALRHDEAQ 65

Query: 85  ANLPHPFPVKTVPPQTI----DKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMV 137
           A       V  +  Q I    D + G+    VH  G+ L    L +P  D V  +Q  +V
Sbjct: 66  A------IVSRIDEQRIVTLPDALFGQLSNVVHGVGMLLLVEKLDTPLPDTV--AQTCIV 117

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V D  N+G+ILRSA A     +      + + S+ + +S  GA  H   ++I    +
Sbjct: 118 LDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVE 174

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           A   +       +   S   + +     + ++A + G EG G+    ++  T    +  P
Sbjct: 175 AQTLIERLAVPVVITDSHGAEAIYDCDLSAELAWVFGNEGAGVSQAWRDAVTLRVTIPQP 234

Query: 258 GIIKALNVSNAAAVALY 274
           G +++LNV+ AAAV ++
Sbjct: 235 GGMESLNVAAAAAVCVF 251


>gi|111114873|ref|YP_709491.1| spoU protein [Borrelia afzelii PKo]
 gi|110890147|gb|ABH01315.1| spoU protein [Borrelia afzelii PKo]
          Length = 222

 Score = 43.5 bits (101), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT---TKRYSPSESAVLAKSASGALEH 186
           R + L  VL+ +   HN  A +R+        I       +Y+ +    L     G+ + 
Sbjct: 35  RTNYLTFVLEDIVQSHNASATIRTGEILGLSDIYVIDKNNKYTLNPDITL-----GSSQW 89

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I   +  N   A+ ++ S G+  +  S S+    LE    N+K+A+  G E  GL  +  
Sbjct: 90  INLNKYKNAKFAIDRLKSDGYSIVATSLSEQSVNLENFPINNKMAVFFGTELTGLSSEVL 149

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E A     + M G  ++ N+S A A+ +Y
Sbjct: 150 EAADLCIKIPMYGFTQSYNISVAVAIVMY 178


>gi|319957276|ref|YP_004168539.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319419680|gb|ADV46790.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 260

 Score = 43.5 bits (101), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L  +N+  N+GAI RSA A    G +              + ++G   H+  +++  
Sbjct: 113 VVMLTRLNNLENVGAIARSAAALGVGGYVVPSSGPHPYGRRAIRVSTG---HVTRLKVHC 169

Query: 195 LTDALQKMH---SWGFQTIGLSSDSKK-PLEQEIKNDK-IALILGAEGKGLRPKTQETAT 249
             D LQ M      G+  +   +  +  PL +     K  ALILG E +G+  +  E   
Sbjct: 170 YEDILQTMERLRELGYTLLAAEATPEAVPLARFGPVPKRWALILGNEEEGVPEEVLEKCD 229

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           ++  + M   IK+ NV+ A A+ +Y
Sbjct: 230 AVLQIEMEPGIKSFNVATAGAIIMY 254


>gi|332184159|gb|AEE26413.1| rRNA methyltransferase [Francisella cf. novicida 3523]
          Length = 250

 Score = 43.5 bits (101), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 24/155 (15%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +   ++VLD + DP NIG ILR+A+A     II    T   ++P       ++  GA   
Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEIILINGTVDPFNPKA----IRAGMGAQFS 156

Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + +  +  L D      LQ+   W   T   G+S  +K     E K     L+ G E  G
Sbjct: 157 LKFSYLETLADLKNISKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +    T +  L     I++LNV+ AA + L+
Sbjct: 211 IEDFSIGEKTMIPTLSD---IESLNVAQAATIYLF 242


>gi|193212910|ref|YP_001998863.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
 gi|193086387|gb|ACF11663.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
          Length = 178

 Score = 43.5 bits (101), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 2/141 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L ++    N+G++ R+A A   D I+ T   +      + K+A GA   +P+   ++ 
Sbjct: 30  LMLHNIRSMWNVGSMFRTADAAGIDEIVITGYTATPPRKEIDKTALGAQLTVPWRHFADP 89

Query: 196 TDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            +AL  +   G +  GL  + +S+     +  +  + L++G E  G+  +       +  
Sbjct: 90  LEALSVLKGEGCKVFGLEIAENSRSYSSLQPDDYPLVLLVGNEVDGIGDELLARCDGVLE 149

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G   +LNVS AA VAL+
Sbjct: 150 IPQYGTKHSLNVSVAAGVALF 170


>gi|212715739|ref|ZP_03323867.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661106|gb|EEB21681.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
           16992]
          Length = 290

 Score = 43.5 bits (101), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 25/168 (14%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           S  LD      ++     V DP N G ++RSA A  C  ++         +  + +S +G
Sbjct: 119 SAVLDDFDGHAMVAAFWQVRDPGNAGTVIRSADAAGCSAVVLVDDCVDMFNPKVVRSTAG 178

Query: 183 ALEHIPYIRISNLTDALQKMHSWG-------FQTIGLSSDSKKPLEQEIKNDKIAL---- 231
           +L H+P      LT       +W        +      +DS++P   E   D IA+    
Sbjct: 179 SLFHLPI-----LTMGTDDFFAWCDTHELAVYAADVYGTDSRQP---ESLTDVIAMPETL 230

Query: 232 ------ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 + G E +GL  +  E    +  + + G  ++LN+  +++V L
Sbjct: 231 AGAKAVLFGNEARGLTKEVLERTDRIVSIPLYGKAESLNLGTSSSVML 278


>gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 178

 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+ A L   T++  +++    L+++LD+V   HN+G++ R+A AF  + I      +   
Sbjct: 6   LKNAELDRKTVEEFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPP 65

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKI 229
              + K+A GA E + +  +++    ++++     + + +       +    K   N   
Sbjct: 66  HKDIRKTALGATETVVWEYVNDTVALVERLKEDHVKILAIEQAEDAIMLNTFKPEPNTTY 125

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A++ G E KG++      + ++  +   G   +LN+S +  V ++
Sbjct: 126 AVVFGNEVKGVQQDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMW 170


>gi|300814789|ref|ZP_07095032.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511097|gb|EFK38354.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 223

 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + LD ++D  N+G I+R+A AF+  G+I ++      +    ++   ++  +P   +  
Sbjct: 85  FLYLDKISDAGNMGTIIRTADAFNLSGVIISEDSCDIYNPKTIRATMASIFRVPIYFLKE 144

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             D L K +   F+ I  + +  KP+++   +  + L++G E  G+  K  E A     +
Sbjct: 145 --DELIKNN---FKIIVSALEDSKPIKECDLSGDLILVIGNEAHGVSQKILERANLKVKI 199

Query: 255 HMPGIIKALNVSNAAAVALY 274
            +   + +LN   AA +  Y
Sbjct: 200 PIRDSVDSLNAGVAAGIFAY 219


>gi|255079034|ref|XP_002503097.1| predicted protein [Micromonas sp. RCC299]
 gi|226518363|gb|ACO64355.1| predicted protein [Micromonas sp. RCC299]
          Length = 204

 Score = 43.5 bits (101), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 17/143 (11%)

Query: 145 HNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQK 201
           HN+G I R A AF    +  I  K Y+            G+  H+ ++    L+DA +  
Sbjct: 11  HNVGTIARCATAFGVRSVVLIGAKSYNTF-------GCKGSSNHVDFVHYPTLSDARVGL 63

Query: 202 MHSWGFQTI-GLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           M   G   I G+   D   P+E        A I G EG GL  + +       ++   G+
Sbjct: 64  MERMGVTKILGVEICDGAVPIETHPFAQNTAFIAGNEGDGLTKQQKAICDGFVYIRQHGV 123

Query: 260 IKA-LNVSNAAAVALYITQNHFA 281
             A LNV+ A+A+ ++    HFA
Sbjct: 124 GTASLNVAVASALVMH----HFA 142


>gi|297491399|ref|XP_002698855.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Bos taurus]
 gi|296472224|gb|DAA14339.1| TAR (HIV-1) RNA binding protein 1 [Bos taurus]
          Length = 890

 Score = 43.5 bits (101), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L++V   ++ P N+G + R+   F    ++        +      S S A + +P + 
Sbjct: 731 SRLIVVASLIDKPTNLGGLCRTCEVFGAAALVMGSLQCVRDKQFQHLSVS-AEQWLPLVE 789

Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    L D LQ+  + G+  +G+   +K   L +    +K  L+LG E +G+     +  
Sbjct: 790 VKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQL 849

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   GII++LNV  + A+ ++
Sbjct: 850 DVCVEIPQQGIIRSLNVHVSGALLIW 875


>gi|239930134|ref|ZP_04687087.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 249

 Score = 43.5 bits (101), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLDH  +  N GA++R A  F   G++TT    P    V+   A         +  + 
Sbjct: 109 VVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 160

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             + L            L  + +     ++ +D + L  G+E  GL P+ +  A  +  L
Sbjct: 161 AVERLTAGELPPGPVFALDPEGEDIRGTKLPDDAL-LAFGSERSGLSPELRARADHLIAL 219

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M  ++ + N++ + A+ LY
Sbjct: 220 PMRSMVSSYNLATSVAMTLY 239


>gi|291438474|ref|ZP_06577864.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341369|gb|EFE68325.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 252

 Score = 43.5 bits (101), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLDH  +  N GA++R A  F   G++TT    P    V+   A         +  + 
Sbjct: 112 VVVLDHPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 163

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             + L            L  + +     ++ +D + L  G+E  GL P+ +  A  +  L
Sbjct: 164 AVERLTAGELPPGPVFALDPEGEDIRGTKLPDDAL-LAFGSERSGLSPELRARADHLIAL 222

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M  ++ + N++ + A+ LY
Sbjct: 223 PMRSMVSSYNLATSVAMTLY 242


>gi|305666461|ref|YP_003862748.1| putative rRNA methylase [Maribacter sp. HTCC2170]
 gi|88708728|gb|EAR00963.1| putative rRNA methylase [Maribacter sp. HTCC2170]
          Length = 268

 Score = 43.5 bits (101), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 13/152 (8%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGAL 184
           +R + L++V +    P NIGA+LR+A A + D ++        Y+P+    + +S+ G +
Sbjct: 116 LRKNALILVAEAPEKPGNIGALLRTADAANLDAVLIANPKGDLYNPN----IVRSSVGCV 171

Query: 185 --EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               I     S + D L+K     F    LS+   +P  Q       A+++G E  GL  
Sbjct: 172 FTNQIGLGSTSQIIDFLKKKQINLF-CAALSAS--QPYTQVNFEKAAAIVVGTESTGLSQ 228

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +T+   + M G I ++NVS +AA+ ++
Sbjct: 229 EWLNASTNNIIIPMEGEIDSMNVSVSAAILIF 260


>gi|218288919|ref|ZP_03493170.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241008|gb|EED08185.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 467

 Score = 43.5 bits (101), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 23/168 (13%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           PQ    +   E     +A+ + P   P     ++   ++VLD + DP N+G ++RSA AF
Sbjct: 79  PQAFAAVADTETPQGLMAVASIPQTEP-----QHGDRVLVLDAIQDPGNVGTLVRSAEAF 133

Query: 158 SCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ----- 208
               I+    T   Y+P     + +++ G L  +  I      DA   + +W  +     
Sbjct: 134 GFGEIVFGTGTADPYAPK----VVRASMGGLFRVNAI----AGDAEAYLRAWRDRHPDGL 185

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEG-KGLRPKTQETATSMAHLH 255
            +  ++D+++  ++     ++A+++G EG +  R + Q       H H
Sbjct: 186 VVATAADARERCDEAPMAGEVAMVIGNEGPRRERRRVQAGTAVRGHPH 233


>gi|194679306|ref|XP_614988.4| PREDICTED: TAR (HIV-1) RNA binding protein 1, partial [Bos taurus]
          Length = 1407

 Score = 43.5 bits (101), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++        +      S S A + +P + 
Sbjct: 1248 SRLIVVASLIDKPTNLGGLCRTCEVFGAAALVMGSLQCVRDKQFQHLSVS-AEQWLPLVE 1306

Query: 192  IS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  +G+   +K   L +    +K  L+LG E +G+     +  
Sbjct: 1307 VKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQL 1366

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1367 DVCVEIPQQGIIRSLNVHVSGALLIW 1392


>gi|189459414|ref|ZP_03008199.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
 gi|189433871|gb|EDV02856.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
          Length = 257

 Score = 43.5 bits (101), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V    L + LD V DP N+G I+R A  F  + I  +   +   +    ++  GA+  + 
Sbjct: 98  VTEQSLCLALDDVQDPGNLGTIIRIADWFGIEHIFCSSGTADVYNPKTIQATMGAIARVK 157

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   NL D L+          G   D +    QE+  + I +I+G EG G+  +  E  
Sbjct: 158 -LHYCNLPDFLKSASQKNTPIFGTFLDGENIYTQELPANGI-IIMGNEGNGISKQIAEMV 215

Query: 249 T 249
           T
Sbjct: 216 T 216


>gi|237744635|ref|ZP_04575116.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229431864|gb|EEO42076.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 258

 Score = 43.5 bits (101), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 4/142 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192
           L++LD V+DP N+G I+R   A +   II TKR   + +  + ++  G++ ++   Y+  
Sbjct: 110 LVILDDVSDPGNLGTIIRICDATNFKDIILTKRTVDAYNEKVIRATMGSILNVNLYYLEK 169

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           S + + L K +++   +  L   +    + E+K +K A++ G EG G+            
Sbjct: 170 SKIINFL-KENNYSIISTYLDKTAIPYNKIELK-EKNAIVFGNEGNGISSDFINITDYKT 227

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + +    ++LNV+ A  + LY
Sbjct: 228 IIPILSNTESLNVAVATGIILY 249


>gi|269303406|gb|ACZ33506.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 265

 Score = 43.1 bits (100), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 26/158 (16%)

Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGAL 184
           +N+Q   ++++ V  P N+GAILR A     DG+I        Y+P+    + +S+ GA+
Sbjct: 112 KNAQPFYLIIEQVEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPN----VVRSSLGAV 167

Query: 185 EHIPYIRISNLTD-ALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             +P + IS      L K   W         +T+  S +   P          AL+ G+E
Sbjct: 168 FSLPILSISREEGKELFKQEGWTVFVTSPRAETMYFSKNYLGP---------TALVFGSE 218

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL         S   L M G   +LN++ + A   Y
Sbjct: 219 KDGLTEDWFSEDFSEIALPMLGESDSLNLATSVAAVAY 256


>gi|257482401|ref|ZP_05636442.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 112

 Score = 43.1 bits (100), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 51  LYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGVH V A L ++P R     LA      R+     L     V     +  +     E 
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWVEG 66

Query: 110 VHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           VHQG+  + +P       +L   LD    S LL+VLD V DPHN+G
Sbjct: 67  VHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLG 112


>gi|15618441|ref|NP_224726.1| rRNA methylase [Chlamydophila pneumoniae CWL029]
 gi|15836061|ref|NP_300585.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|16752511|ref|NP_444773.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|33241882|ref|NP_876823.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|4376820|gb|AAD18670.1| rRNA Methylase [Chlamydophila pneumoniae CWL029]
 gi|8163389|gb|AAF73643.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|8978901|dbj|BAA98736.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|33236392|gb|AAP98480.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
          Length = 265

 Score = 43.1 bits (100), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 26/158 (16%)

Query: 130 RNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGAL 184
           +N+Q   ++++ V  P N+GAILR A     DG+I        Y+P+    + +S+ GA+
Sbjct: 112 KNAQPFYLIIEQVEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPN----VVRSSLGAV 167

Query: 185 EHIPYIRISNLTD-ALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             +P + IS      L K   W         +T+  S +   P          AL+ G+E
Sbjct: 168 FSLPILSISREEGKELFKQEGWTVFVTSPRAETMYFSKNYLGP---------TALVFGSE 218

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             GL         S   L M G   +LN++ + A   Y
Sbjct: 219 KDGLTEDWFSEDFSEIALPMLGESDSLNLATSVAAVAY 256


>gi|72162085|ref|YP_289742.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
 gi|71915817|gb|AAZ55719.1| probable tRNA/rRNA methyltransferase [Thermobifida fusca YX]
          Length = 184

 Score = 43.1 bits (100), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++++ ++++ V  P N+G+ILR+A  F  D +  T      E   + K+A G    + + 
Sbjct: 22  HNRISLIVESVTQPFNLGSILRTAATFGVDTLWLTGNAVTPEHRQVHKTALGTQTKVRWE 81

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + +   +A+    + G++ + L  +    PL +      + L +GAE  G  P       
Sbjct: 82  KTATSAEAVAAARAAGYRVVALELAHGAVPLHRAPLTGDVCLAVGAEDHGCSPALLAAVD 141

Query: 250 SMAHLHMPGIIKALN 264
           ++ ++   G + +LN
Sbjct: 142 AVTYIPQTGRVGSLN 156


>gi|294783897|ref|ZP_06749219.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
 gi|294479709|gb|EFG27488.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
          Length = 261

 Score = 43.1 bits (100), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 69/141 (48%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++LD V DP N+G I+R   A +   II TK    + +  + ++  G++ ++    +  
Sbjct: 113 LVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLFYLEK 172

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAH 253
             + ++ +    +  I    D +     +IK  +K A+I G EG+G+  +    +     
Sbjct: 173 -QEIIKLLKENNYSIIATYLDKEALPYNKIKLKEKNAVIFGNEGRGISDEFVSISDCKTV 231

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + +    ++LNV+ A+A+ LY
Sbjct: 232 IPILSNTESLNVAVASAIILY 252


>gi|326429925|gb|EGD75495.1| hypothetical protein PTSG_06570 [Salpingoeca sp. ATCC 50818]
          Length = 1687

 Score = 43.1 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 74/148 (50%), Gaps = 4/148 (2%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188
            + S+L++V   ++   N+G + R+   F+   ++   ++Y+ ++        S   +H  
Sbjct: 1531 QRSKLVVVASLISLGTNLGGLSRTCEIFNVGMLVLAAEKYTRTKEFRALSVTSERWQHFE 1590

Query: 189  YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247
            ++  +NLT+ L+ M   G+  +G+   +      ++K  +   L+LG E KG+ P    T
Sbjct: 1591 FVEPANLTEWLRSMKQQGYTIVGVEQTADSVSLPQVKFPEYTVLLLGDEAKGI-PADLLT 1649

Query: 248  ATSM-AHLHMPGIIKALNVSNAAAVALY 274
             T +   +   G+ ++LNV  +A++ +Y
Sbjct: 1650 ETDVNVEIPQKGVTRSLNVHVSASLLIY 1677


>gi|301016090|pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
 gi|301016091|pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
 gi|301016092|pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
           S-Adenosyl- L-Methionine Complex
 gi|301016093|pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
           S-Adenosyl- L-Methionine Complex
          Length = 277

 Score = 43.1 bits (100), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV+ +    ++++   E   +   +   P  +   D       ++VLD V    NIGAI
Sbjct: 77  IPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAI 136

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLA-----KSASGALEHIPYIRISNLTDALQKMHSW 205
           +R+++A    GI+       S+ A +A     +++ G +  +P + +++  +A+  +   
Sbjct: 137 VRTSLALGAAGIVLVD----SDLATIADRRLLRASRGYVFSLPVV-LADREEAVSFLRDN 191

Query: 206 GFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               + L +D    ++    + D++AL+ G+E  G     QE +     + M    ++LN
Sbjct: 192 DIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLN 251

Query: 265 VSNAAAVALY 274
           VS +  +AL+
Sbjct: 252 VSVSVGIALH 261


>gi|308235806|ref|ZP_07666543.1| rRNA methylase [Gardnerella vaginalis ATCC 14018]
 gi|311114467|ref|YP_003985688.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
 gi|310945961|gb|ADP38665.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 321

 Score = 43.1 bits (100), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 17/150 (11%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N GAI+R A    C  ++         ++ L +S +G+L H+P + +S   D  
Sbjct: 161 QVRDPGNAGAIIRVADVAGCSAVVFVDDCVNRFNSKLVRSTAGSLFHLPVVTMSE-DDWF 219

Query: 200 QKMHSWGFQTIG---LSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRPK 243
               S   + I      +++KKP             L +       A++ G E +GL  +
Sbjct: 220 DWTKSLKIRVIAADIYGTENKKPKSFANLLKPLSDDLNKGYNEGSNAILFGNEARGLPEE 279

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  ++ + + G  +++N++ +AAV L
Sbjct: 280 ILNRVDEISVIPIYGKAESMNLATSAAVML 309


>gi|239815595|ref|YP_002944505.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
 gi|239802172|gb|ACS19239.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
          Length = 264

 Score = 43.1 bits (100), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 28/261 (10%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALARL 81
           R++   K+++   Q      +   ++L G H   AAL     P+  +F      +A A  
Sbjct: 13  RDNPLLKELRKLAQDPGAYRRLGRVWLEGDHLCRAALARGIRPAVAVFSESFWPSAPA-- 70

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-----M 136
           +W ++      +KTV       +V  + +     LE+   +   LD     +LL     +
Sbjct: 71  EWASSA-----IKTV-------VVDDDLLRAVSGLESPAPMGFVLDLPARPELLPDAPSV 118

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195
           VLD + D  N G+ILRSA AF    +I  K  +   +  + ++  GA  H     I  + 
Sbjct: 119 VLDRLQDAGNAGSILRSAAAFGFKQVIALKGTAALWAPKVLRAGMGA--HFGLRLIEGVE 176

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            DAL ++       +  SS     L +       A +LG EG+G+    +  A+    + 
Sbjct: 177 ADALDELK---VPLVATSSHRGDWLHEARLPHPCAWLLGHEGQGVSAALEARASHHIRIA 233

Query: 256 MPGIIKALNVSNAAAVALYIT 276
            PG  ++LNV+ AAA+ L+ +
Sbjct: 234 QPGGEESLNVAAAAAICLHAS 254


>gi|251791702|ref|YP_003006423.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
 gi|247540323|gb|ACT08944.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
          Length = 230

 Score = 43.1 bits (100), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +     +  S    L  +A+G+   +  
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTSRMKTLVSTAAGSNSWVQV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETA 248
                + DA+  +   G Q +  +  +     +++   +   ++LG E  G+       A
Sbjct: 74  KTHRTIQDAVGHLKMQGMQILATNLSAGAVDFRDVDYTRPTCILLGQEKTGISADALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G++++LNVS A+A+ LY  Q  
Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQ 164


>gi|238759850|ref|ZP_04621006.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
 gi|238701911|gb|EEP94472.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
          Length = 230

 Score = 43.1 bits (100), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 11/153 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGALE 185
           R   L + L+ V+ PHN+ AI+R+A A     +     TT+ Y+   SA  + S      
Sbjct: 16  RQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRLSSAAGSNSWVQVKT 75

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKT 244
           H      +++  A+  + S   Q +      K    +EI   +   +++G E  G+  + 
Sbjct: 76  H------THIAGAIAHLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEEA 129

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              A     + M G++++LNVS A+A+ LY  Q
Sbjct: 130 LALADQDIIIPMIGMVQSLNVSVASALILYEAQ 162


>gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133738478|emb|CAL61523.1| tRNA/rRNA methyltransferase SpoU-like [Herminiimonas
           arsenicoxydans]
          Length = 265

 Score = 43.1 bits (100), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  Q  ++LD V DP N G+I+RSA A     +  +   + + S  + ++  GA  H   
Sbjct: 114 RLLQSAVLLDRVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAGMGA--HF-L 170

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + I    D    +       I  SS ++K L        +A + G EG+G+       AT
Sbjct: 171 MEIFENVDLEALIARADIPVIATSSHAEKRLYDLDLTQPVAWLFGHEGQGVTEHLLALAT 230

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               +   G I++LNV+ ++AV  +
Sbjct: 231 HQITIPHLGAIESLNVAASSAVCFF 255


>gi|332300622|ref|YP_004442543.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177685|gb|AEE13375.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 262

 Score = 43.1 bits (100), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           P+ I+++ G ++    LAL   P++     A++   LL  LD V DP N+G +LR+    
Sbjct: 82  PKQIERVSGLKSPRPLLALCEIPIIEAP-QALQQPTLL--LDDVQDPGNVGTLLRTCDWM 138

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++ T+  +   S  + ++  GAL  +   R ++ T  L  +       IG   D  
Sbjct: 139 GIRQVLCTEGCADVYSPKVLQATMGALARVQVYRYTDRTALLTMLTQTEIPVIGTFIDG- 197

Query: 218 KPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALNVSNAAAV 271
            PL   +        L+LG EG G+   +  +A     + +P  +    ++LNV+ A A+
Sbjct: 198 APLRTLRLAPEQPYILVLGNEGNGI--SSDLSALVSQRITIPSPVDSHCESLNVAVAGAI 255

Query: 272 AL 273
            +
Sbjct: 256 VM 257


>gi|146071500|ref|XP_001463133.1| hypothetical protein [Leishmania infantum]
 gi|134067216|emb|CAM65483.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322496565|emb|CBZ31635.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 545

 Score = 43.1 bits (100), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ L+ + DP NIG ILR+A  F  D +I +++ + S +A ++++++G LEH+   + S 
Sbjct: 253 VLFLERIVDPANIGGILRTAFFFGVDHVILSRQCA-SCTAAVSRTSTGFLEHLRVYQAST 311

Query: 195 LTDALQKM--HSWGFQTIGLSS 214
            + A  +     W      LSS
Sbjct: 312 SSAAFLRASRQVWASAVPSLSS 333


>gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 206

 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 3/143 (2%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +       + D
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEVHAI--WPGSRMRTMASAAAGSNSWVQVKTHRTIGD 58

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHM 256
           A+  +   G Q +      K    +EI   +   +++G E  G+  +    A     + M
Sbjct: 59  AVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALALADRDIIIPM 118

Query: 257 PGIIKALNVSNAAAVALYITQNH 279
            G++++LNVS A+A+ LY  Q  
Sbjct: 119 IGMVQSLNVSVASALILYEAQRQ 141


>gi|302421720|ref|XP_003008690.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
 gi|261351836|gb|EEY14264.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
          Length = 610

 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 18/156 (11%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            +++L  V DP N+GA+LR+A       ++ TK+ S   +  + K+A+GA E +    ++
Sbjct: 421 FVLLLHEVMDPGNLGAMLRTARFLGAAAVVITKQTSSPITPTVVKAAAGAAEELAIFSVA 480

Query: 194 NLTDALQKMHSWGFQT---IGLSSDSKKPLEQEIKNDKIA-----------LILGAEGKG 239
           +    L+     G+++   +  +S S     Q++  D++A           L+LG EG+G
Sbjct: 481 DPVAFLEGSQKAGWESYVAVAPASGSSNSARQQVTADELAEEDPLREKPCILVLGNEGEG 540

Query: 240 LRPKTQETATSMAHLHMP----GIIKALNVSNAAAV 271
           L  K    A+    +         + +LNVS AAA+
Sbjct: 541 LSRKIMSRASRQVTIQRQPAGRSSVDSLNVSVAAAL 576


>gi|1709266|sp|P52391|NHS_STRAS RecName: Full=23S rRNA methyltransferase; Short=23S rRNA methylase
 gi|1654411|gb|AAB17875.1| 23S rRNA methyltransferase [Streptomyces actuosus]
          Length = 274

 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 87/190 (45%), Gaps = 11/190 (5%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV+ +    ++++   E   +   +   P  +   D       ++VLD V    NIGAI
Sbjct: 74  IPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAI 133

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLA-----KSASGALEHIPYIRISNLTDALQKMHSW 205
           +R+++A    GI+       S+ A +A     +++ G +  +P + +++  +A+  +   
Sbjct: 134 VRTSLALGAAGIVLVD----SDLATIADRRLLRASRGYVFSLPVV-LADREEAVSFLRDN 188

Query: 206 GFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               + L +D    ++    + D++AL+ G+E  G     QE +     + M    ++LN
Sbjct: 189 DIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLN 248

Query: 265 VSNAAAVALY 274
           VS +  +AL+
Sbjct: 249 VSVSVGIALH 258


>gi|255690187|ref|ZP_05413862.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
 gi|260624301|gb|EEX47172.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
          Length = 255

 Score = 43.1 bits (100), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 18/169 (10%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167
            Q LA+   P  + T D  R+S L + LD V DP N+G I+R A  F  + II ++    
Sbjct: 83  QQVLAILEQPQYTLTPDIARHS-LCLALDDVQDPGNLGTIIRLADWFGIEDIICSQNTVD 141

Query: 168 -YSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            Y+P       K+    +  I  +R+  ++L D ++          G   D +   EQ +
Sbjct: 142 VYNP-------KTVQATMGGIARVRVHYTSLPDFIRSQGK-EIPVFGTFLDGQNMYEQPL 193

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             + + +++G EG G+  + +  A     L++P   +    S +  VA+
Sbjct: 194 SANGL-IVMGNEGNGIGKEVE--ALINRKLYIPNYPQGQETSESLNVAI 239


>gi|227834128|ref|YP_002835835.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455144|gb|ACP33897.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 247

 Score = 43.1 bits (100), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187
           R   L + +++  +  NIG ++R+A AF+ D   I+  +R++            GA+   
Sbjct: 94  RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWN----------RRGAMVTD 143

Query: 188 PYIRISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            Y  + + TD  + M     Q + +    ++    PLE     ++  L+ G EG G+ P+
Sbjct: 144 RYQHLMHHTDVSELMAWAADQDLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVSPE 203

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+ A     +   G  +++N   AA +A++
Sbjct: 204 AQDAAVMTCSIAQFGSTRSINAGVAAGIAMH 234


>gi|323454345|gb|EGB10215.1| hypothetical protein AURANDRAFT_15819 [Aureococcus anophagefferens]
          Length = 178

 Score = 43.1 bits (100), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 8/147 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY-SPSESAVLAKSASGALEHIPYIRISN 194
           +VLD+V    N+G+I RSA    C  ++T     +P  +A LAK+A GA   + +    +
Sbjct: 25  VVLDNVRSAENVGSIFRSADCGRCLEVVTCGFTPNPLSTAKLAKTAFGAEAAVAHRHFES 84

Query: 195 LTDALQKMHS-----WGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247
              A++++ +     W  +T+  ++            D   +AL+LG E  G+       
Sbjct: 85  TKAAVEELKAAGVSVWALETVDGAAPYAAAPLPPGAFDGPGVALVLGNEVTGVDGAVLPL 144

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++  +   G   ++NV+ AA   ++
Sbjct: 145 VDAVVEIPTFGTKNSMNVACAATTVIF 171


>gi|134302313|ref|YP_001122282.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050090|gb|ABO47161.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 250

 Score = 43.1 bits (100), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 24/155 (15%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +   ++V D + DP NIG ILR+A+A     +I    T   ++P       ++  GA   
Sbjct: 101 DDDFILVFDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKA----IRAGMGAQFS 156

Query: 187 IPYIRISNLTD-----ALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + +  I+NL        LQ+   W   T   G+S  +K     E K     L+ G E  G
Sbjct: 157 LKFGYITNLAKLKNIAKLQQRKIW-LTTPHQGVSCYAK-----EFKLANSILVFGEEANG 210

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +    T +  L     I++LNV+ AA + L+
Sbjct: 211 IEDFSVGQKTMIPTLSD---IESLNVAQAATIYLF 242


>gi|253568346|ref|ZP_04845757.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842419|gb|EES70499.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 252

 Score = 43.1 bits (100), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 23/172 (13%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167
            Q LA+   P  + + D VR S L + LD + DP N+G I+R A  F  + II ++    
Sbjct: 81  QQVLAVFEQPQYTLSPDFVRQS-LCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVD 139

Query: 168 -YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIK 225
            Y+P       K+    +  I  +++ + T   + +HS G   + G   D +   EQ + 
Sbjct: 140 VYNP-------KTIQATMGGIARVKV-HYTSLPEFIHSLGDAPVFGTFLDGENMYEQPLS 191

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAV 271
            + + +++G EG G+  + +  A     L++P         ++LNV+ A AV
Sbjct: 192 TNGL-IVMGNEGNGIGKEVE--ALINRKLYIPNYPQGKETSESLNVAIATAV 240


>gi|213583507|ref|ZP_03365333.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 119

 Score = 43.1 bits (100), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 46/102 (45%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ES    ++A G  EH+  I   ++ D L      G+  +  SSD  + L      +K+ L
Sbjct: 9   ESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVL 68

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +LG E   L    +E       ++  G +++LNVS A  V L
Sbjct: 69  VLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLL 110


>gi|329946190|ref|ZP_08293803.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328527788|gb|EGF54779.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 245

 Score = 43.1 bits (100), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 10/150 (6%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALE 185
           A R  +L + +++V+   NIG+I+RSA AF+  G  II  +R++   + V  +     + 
Sbjct: 91  AARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRRRWNKRGAMVTNRYLD--VR 148

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           H P        + L    + G++ IG+ +    +PLE     ++  ++ G+EG+G+  + 
Sbjct: 149 HHP-----EPGELLDWAAASGYEVIGIDNGPGARPLEAAALPERCLMVFGSEGEGISAEL 203

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                S+  +   G  +++NV+ AAAVA++
Sbjct: 204 SAGCASLLRIGQYGSTRSINVAAAAAVAMH 233


>gi|312130425|ref|YP_003997765.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM
           17132]
 gi|311906971|gb|ADQ17412.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM
           17132]
          Length = 171

 Score = 43.1 bits (100), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 16/163 (9%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASG 182
           AV    L ++LD +    N+G+I R++     DG    K Y    +A      + K+A G
Sbjct: 14  AVEKLNLDLILDDIRSMSNVGSIFRTS-----DGFRVGKLYLCGITATPPHREIEKTALG 68

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKG 239
           A   + +    +    ++ +   G++ + L  +D+   L+  + IK+ K ALILG E  G
Sbjct: 69  ATASVDWEYKEDALALVRALKQAGYKILALEQADNSTYLQNFRPIKDQKYALILGNEVFG 128

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +  +    A  +  +   G   + NVS +A + L+   ++FAK
Sbjct: 129 VNEELIAEADEVIEIPQFGTKHSFNVSVSAGMFLW---DYFAK 168


>gi|154331091|ref|XP_001561985.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059307|emb|CAM37009.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 585

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ L+ + DP N+G ILR+A  F  D ++ +++ +   +AV +++++G LEH+   R S 
Sbjct: 270 VLFLERIIDPTNVGGILRTAFFFGVDHVVLSRQCATCTAAV-SRTSTGFLEHLCVYRAST 328

Query: 195 LTDALQK 201
            + A  +
Sbjct: 329 SSAAFLR 335


>gi|294791506|ref|ZP_06756663.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
 gi|294457977|gb|EFG26331.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
          Length = 294

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 22/198 (11%)

Query: 99  QTIDKIVGKEAVHQGLALETAPL--LSPTLDAVRNSQ-----------LLMVLDHVNDPH 145
           Q I  +V  EAV  GLA + +    L+   D+V++             L +    + DP 
Sbjct: 92  QGIGALVRTEAVTGGLAPDASSFAALASLADSVKSPGPVETAGHPARPLFLACWQLRDPG 151

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN---LTDALQ-K 201
           N G I+R A A  C  +I         +  + +S +G+L H+P + +S     T+A +  
Sbjct: 152 NAGTIIRVADAAGCPALILVDDCVDVTNPKVVRSTAGSLFHLPIVTLSTDDFFTEAARLG 211

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDK-----IALILGAEGKGLRPKTQETATSMAHLHM 256
           +        G       PL   + + K     + ++ G E +GL         S   + +
Sbjct: 212 LPVCAADAYGTDQVEAIPLPDLMDSLKSSSQPLCILFGNEARGLDDSLINRCQSAVRIPL 271

Query: 257 PGIIKALNVSNAAAVALY 274
            G  ++LNV+ +A++  Y
Sbjct: 272 YGRAESLNVAMSASIIAY 289


>gi|116624472|ref|YP_826628.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227634|gb|ABJ86343.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 276

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 13/191 (6%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIG 148
           P  + ++P      I G E     +AL   P  +  L+ + +   L++VLD + DP N G
Sbjct: 85  PLKLVSLPDALFAGIAGTETTQGVIALVQPP--AWKLEQLFQRPALVVVLDGLQDPGNAG 142

Query: 149 AILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPY---IRISNLTDALQKMHS 204
            I+R+A AF   G++  K   SP     L ++++G+L  +P+   +  +    AL +   
Sbjct: 143 TIVRAAEAFGATGVVFLKGAVSPYNPKTL-RASAGSLFRVPFLHGVDAAVACTALAQHQV 201

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-IKAL 263
             F  +   + S+     ++      L++G E  G+    +  A  ++   +P + +++L
Sbjct: 202 ELFAGVPAGASSRTLAAVDLAR-PCGLVIGNEAHGVSRGLRAAAHDVS---IPTVGVESL 257

Query: 264 NVSNAAAVALY 274
           N + AA++ LY
Sbjct: 258 NAAMAASILLY 268


>gi|188582880|ref|YP_001926325.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
 gi|179346378|gb|ACB81790.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
          Length = 269

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           N+G + R+A AF  D + +  +   P     +  SA  AL  +P+ R ++    L     
Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPFARAASGAALLDLAQR 191

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                + L+    + L++     +  L+LG EG GL       A  +     PG   +LN
Sbjct: 192 HDLTPLALTPGGHETLDRLAPPSRALLLLGTEGPGLPEALMARARRLRIAMAPG-FDSLN 250

Query: 265 VSNAAAVALY 274
           V+ A A+AL+
Sbjct: 251 VATAGAIALH 260


>gi|332827813|gb|EGK00548.1| hypothetical protein HMPREF9455_03191 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 263

 Score = 42.7 bits (99), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 33/157 (21%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPS------------ESAVLA 177
            +++L+ V  P N+GAILR+A A   D +I     T  Y+P+            ++AV  
Sbjct: 116 FIIILEAVEKPGNLGAILRTADAAQADAVIICDPATDLYNPNAIRSSVGCLFTVKTAVC- 174

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
            S+  AL+ + + +I +    LQ    W +Q    S  S             A+++G E 
Sbjct: 175 -SSRDALDFLRHKKIKSFAAELQASQ-W-YQDTDFSIPS-------------AIVMGTEA 218

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL       A +   + M G I +LNVS + AV  +
Sbjct: 219 DGLTDFWLTNADARIKIPMRGKIDSLNVSVSTAVLTF 255


>gi|332293222|ref|YP_004431831.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171308|gb|AEE20563.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 218

 Score = 42.7 bits (99), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++RS  +F    +   +  +     +  + A GA + +  
Sbjct: 28  RTNHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEEVNVKR--IDREIAMGAQKWVDV 85

Query: 190 IRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            R S+    ++ +   G++ +  S   D+ +  + +I  +K A+  G E +GL     + 
Sbjct: 86  QRHSSAKHCIENLRKQGYKIVATSPHKDAHRLEDFDI-TEKAAIFFGRETEGLSDTVLDM 144

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A    ++ M G  ++LN+S +AA+ L
Sbjct: 145 ADDFIYIPMVGFTESLNISVSAAITL 170


>gi|158291898|ref|XP_313427.4| AGAP003655-PA [Anopheles gambiae str. PEST]
 gi|157017508|gb|EAA08963.4| AGAP003655-PA [Anopheles gambiae str. PEST]
          Length = 378

 Score = 42.7 bits (99), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 71/164 (43%), Gaps = 28/164 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V D++ +P+N+G+I+RS  A S   +I  K  +        +  +GA   +P   I   
Sbjct: 205 VVCDNIREPNNLGSIVRSCAAVSVREVILLKGCAHPWDLKCLRGGAGAHFRVP---IYGP 261

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQE-------------IKNDKIALILGAEGKGLRP 242
            +A Q        +I + +D+KKP ++                 D + L++G E  G+  
Sbjct: 262 IEAYQLPEHVRAGSIFVVADNKKPTDERNGFRWKHYDRIDYGSADHVVLVIGGETYGVSD 321

Query: 243 KTQETATS------------MAHLHMPGIIKALNVSNAAAVALY 274
             +   T             +AH+ +   +++LN ++A +V LY
Sbjct: 322 DIRRCLTQNDGEQAPQDRKFVAHIPLANGVESLNTASALSVILY 365


>gi|325279827|ref|YP_004252369.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324311636|gb|ADY32189.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 223

 Score = 42.7 bits (99), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGALE 185
           R   + +VL+ +   HN  A++RSA    C GI    +   R S   ++ +++ A   L 
Sbjct: 30  RTDYVTVVLEDLFQSHNQSAVMRSA---DCYGIQHVHLIENRNSYDMTSTVSQGARDWLS 86

Query: 186 HIPYIRISNLTDA-LQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRP 242
              +  + N T A + ++ + G++ +  +  +      +I  +  K+A   G E  GL  
Sbjct: 87  IHRHKELENNTQATIDQLRAEGYRILATTPHANDIFVDDIDLEKGKMAFFFGTELTGLSD 146

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                A     + M G  ++LNVS  AA+ +Y
Sbjct: 147 LVIGQADEFVKIPMYGFTESLNVSVCAAITMY 178


>gi|262183385|ref|ZP_06042806.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187
           R   L + +++  +  NIG ++R+A AF+ D   I+  +R++            GA+   
Sbjct: 71  RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWN----------RRGAMVTD 120

Query: 188 PYIRISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            Y  + + TD  + M     Q + +    ++    PLE     ++  L+ G EG G+ P+
Sbjct: 121 RYQHLMHHTDVSELMAWAADQDLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVSPE 180

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            Q+ A     +   G  +++N   AA +A++
Sbjct: 181 AQDAAVMTCSIAQFGSTRSINAGVAAGIAMH 211


>gi|320537356|ref|ZP_08037311.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
           phagedenis F0421]
 gi|320145821|gb|EFW37482.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
           phagedenis F0421]
          Length = 254

 Score = 42.7 bits (99), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 111 HQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+       + P +D        ++S +++ LD V + +N+GAI+RSA  F    +I 
Sbjct: 72  HQGVVAMIEEPVIPLIDEQIIDGWAKDSAVVLFLDRVGNSNNLGAIIRSAAFFGIPAVII 131

Query: 165 TKRYSPSESAVLA-KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
           T     ++    A + A G +E +      ++   L+         IG    S + L   
Sbjct: 132 TDEDPQAKITTSAYRVAQGGMEFVTIYHTRSIQWLLRACEG-KITRIGADHRSFRNLNSL 190

Query: 224 IK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 ++   +ILG E  GL   +++    +  +   G I++LNV+ A  + L
Sbjct: 191 PTLLSPDEATMIILGNEETGLSEASKKACDHLVKIPGSGAIESLNVAQAGTLFL 244


>gi|307331242|ref|ZP_07610366.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306883120|gb|EFN14182.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 253

 Score = 42.7 bits (99), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 19/145 (13%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-----ALEHIPY 189
           ++VLD+  +  N+GA++R A  F   G++TT    P     + +S +G     A+E +P 
Sbjct: 114 VVVLDNPRNLGNVGAVVRLAAGFGATGVVTTGDIDPWHPNAV-RSGAGLHFATAVERLP- 171

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                  DAL +    G   + L ++ +      I +D + L  G+E  G+ P+ ++ AT
Sbjct: 172 ------GDALPE----GPLYV-LDAEGEDIRSVTIPDDAL-LAFGSERHGISPELRKRAT 219

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  L M   + + N++ + A+AL+
Sbjct: 220 RLVALPMRPQVSSYNLATSVAMALF 244


>gi|219117827|ref|XP_002179701.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408754|gb|EEC48687.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 169

 Score = 42.7 bits (99), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 17/167 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSES----AVLAKSAS 181
           R  +L +V+ +++   NI A+L  A AF CD ++   +     SP  +    ++      
Sbjct: 2   RIPKLYLVITNISKRPNIRALLELAAAFGCDKVLVVGQQKFDISPKGTDIPRSIREHVER 61

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGL 240
           G L HI   R S+    +  + S G + +G+      +P+E  +     A ++G EG+G+
Sbjct: 62  GGL-HIE--RYSSWEACINFLSSHGIRLVGVEIHVDARPIEAYLDYKDTAFLMGNEGQGI 118

Query: 241 RPKTQETATSMAHL-HMPGIIKALNVSNAAAVALY----ITQNHFAK 282
             K  ++  +   +    G   +LNV  AA++ L+      Q  F+K
Sbjct: 119 NEKHMKSCDAFVTIPQYGGGTASLNVYVAASIVLHSFHQWQQGEFSK 165


>gi|332880032|ref|ZP_08447716.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682028|gb|EGJ54941.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 217

 Score = 42.7 bits (99), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIP 188
           R +   + ++ V   HN  A++R+   F      + + R+      + AK A GA + + 
Sbjct: 25  RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKR---LDAKIAMGAQKWVD 81

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247
             R  N    +  + + G+Q +  +         +   + K A   G E +GL  +    
Sbjct: 82  VFRYDNTQHCIDSLRAKGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSEQVLSQ 141

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A +   + M G  ++LN+S A A+ L
Sbjct: 142 ADTFLKIPMVGFTESLNISVAVAIVL 167


>gi|194289777|ref|YP_002005684.1| tRNA/rRNA methyltransferase protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193223612|emb|CAQ69619.1| putative TRNA/RRNA METHYLTRANSFERASE PROTEIN [Cupriavidus
           taiwanensis LMG 19424]
          Length = 260

 Score = 42.7 bits (99), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  Q  ++LD V D  N+G+ILRSA A            + + S    ++  GA  H+  
Sbjct: 110 RIEQDCIILDGVQDAGNVGSILRSAAAAGIRDAFLATGCAFAWSVKTLRAGMGANFHLNI 169

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +    L     ++       +  SS ++  +        +A ++G EG G+        T
Sbjct: 170 VEHCTLEALAPRL---AIPLLATSSHAEAAVFDTDLRGPVAWVVGNEGAGVSEGWMAHVT 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               +  PG +++LNV+ A A+ L+
Sbjct: 227 RKVGIPQPGGMESLNVAAATAICLF 251


>gi|218295839|ref|ZP_03496619.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
 gi|218243577|gb|EED10105.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
          Length = 158

 Score = 42.7 bits (99), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSESAVLAKSASGALEHIPYI--RI 192
           +VL     P N G + R+A A      +I    +  S   +  K A   L++ PY+  R+
Sbjct: 4   LVLFQPEIPQNAGNVARTAAALGFPLHLIRPLGFRLSHPGL--KRAG--LDYWPYVDLRV 59

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +  +A       G + +  S+  ++ L Q    +   L+ G E +GL P+      S+ 
Sbjct: 60  HDTWEAFLAALPPGARVLAFSARGERNLYQARFQEGDYLLFGPETRGLPPEVLGRFPSL- 118

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
           ++ MPG +++LN++ A  VA Y
Sbjct: 119 YIPMPGPVRSLNLAVAVGVAAY 140


>gi|145507310|ref|XP_001439610.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406805|emb|CAK72213.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1396

 Score = 42.7 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 146  NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--NLTDALQKMH 203
            N G + R+   F C  ++   +    +    A S S A +H+P + I   +L + LQ   
Sbjct: 1259 NFGHLTRTCEIFGCRELVLPNKKILQDEQYQAVSVS-AEQHLPILEIKEDHLMNYLQLKR 1317

Query: 204  SWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G+Q + L   S+       K DK   L+LG E  GL  +  E   +   +   G+I++
Sbjct: 1318 LQGYQLVALEQTSQSKSIVNFKFDKKTVLVLGREKTGLPIEYIELMDNCVEIPQYGVIRS 1377

Query: 263  LNVSNAAAVALY 274
            LNV  +A + ++
Sbjct: 1378 LNVHISAVICVW 1389


>gi|78187067|ref|YP_375110.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
 gi|78166969|gb|ABB24067.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
          Length = 182

 Score = 42.7 bits (99), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++++L ++    N+G++ R+A     + I+ +   +      ++K+A GA   +P+  I 
Sbjct: 30  VVLLLHNIRSMWNVGSLFRTADCAGIEKILLSGYTATPPRKEISKTALGADLSMPWEYIP 89

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSM 251
           +   A+ +M + G +  GL  ++  +P     + +  + L+LG E +G+       +  +
Sbjct: 90  DPHRAVLEMKASGRKVFGLEITEGSRPYTSLSVVDFPLCLVLGNEVQGIDDSLLRLSDGV 149

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +   G   +LNVS AA VAL+
Sbjct: 150 LEIPQYGTKHSLNVSVAAGVALF 172


>gi|304382953|ref|ZP_07365435.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
 gi|304335978|gb|EFM02226.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
          Length = 278

 Score = 42.7 bits (99), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 19/160 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPY 189
           +S L++ LD V DP N+G I+R A  F     ITT   SP +  A   K     +  I  
Sbjct: 127 DSDLVLALDGVQDPGNLGTIIRIADWFG----ITTLFCSPDTADAYNPKVVQATMGSIAR 182

Query: 190 IRI--SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +R+  ++L D L  +H       G   + +   +Q +  + + +++G EGKGL   ++  
Sbjct: 183 VRLVYTDLKDLLDALHP-DTPVYGTLLNGEDIYQQSLSRNGL-IVMGNEGKGL---SKAI 237

Query: 248 ATSMAH-LHMPGI------IKALNVSNAAAVALYITQNHF 280
           A+ + H L +P         ++LNV+ A AV     +  F
Sbjct: 238 ASRVTHRLLIPSFPTEKPTAESLNVAIATAVVCAEFRRRF 277


>gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 278

 Score = 42.7 bits (99), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 11/146 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++LD + DP N+G I+R+A+A   + ++ T       ++ + +SA+GA   +P    SN
Sbjct: 127 LLILDDLADPGNMGTIMRTALAADVERVLLTPNCVDCFNSKVIRSAAGAHLFLPV--ESN 184

Query: 195 LT-DALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETA 248
           +  D +Q+      Q   L +++  P    +  D       ALI+G E  G     +  A
Sbjct: 185 INWDEIQERVRAHCQERVLMAEAHSP---NVYFDLDLVAPFALIIGNEAHGPSQSARALA 241

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T    +     I++LN + AA + LY
Sbjct: 242 TIPVAIPQAAGIESLNAAMAAGILLY 267


>gi|15605128|ref|NP_219913.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789134|ref|YP_328220.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|3328830|gb|AAC68000.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX]
 gi|76167664|gb|AAX50672.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|296435924|gb|ADH18098.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9768]
 gi|296436851|gb|ADH19021.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11222]
 gi|296437785|gb|ADH19946.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11074]
 gi|297140285|gb|ADH97043.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9301]
 gi|297748533|gb|ADI51079.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-EC]
 gi|297749413|gb|ADI52091.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-LC]
          Length = 269

 Score = 42.7 bits (99), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++++    P NIGA+LR A     DG+I        Y+P+    + +S+ G +  +P  +
Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            S L + L  +H   +Q    +  ++     +     + ++ G+E  GL P     +   
Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCN 234

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             L M G   +LN+S++ A   Y
Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257


>gi|89095094|ref|ZP_01168021.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
 gi|89080655|gb|EAR59900.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
          Length = 238

 Score = 42.7 bits (99), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 9/157 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAK-SASGALEH 186
           R   L ++ D VN P N+ A++R+     CD  GI +     P E     + +A G+  +
Sbjct: 16  RQPDLSLIADQVNKPRNLSALVRN-----CDAVGIHSIHTVVPKEGYRTYRGTAKGSDYY 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQ 245
           +      ++ +A+  +   G + +      K    +E       AL++GAE +G+     
Sbjct: 71  VKSRAHESVENAISVVRQQGMKVVAAHFSDKAIDYREFDFTQPCALLMGAEKQGVSDVAA 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + + +   + M G++ +LNVS AA + L   Q+   K
Sbjct: 131 QMSDAHVVIPMMGMVSSLNVSTAAGIILVEAQHQRLK 167


>gi|117624802|ref|YP_853715.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1]
 gi|115513926|gb|ABJ02001.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1]
          Length = 123

 Score = 42.7 bits (99), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 46/102 (45%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ES    ++A G  E++  I   N+ + L      G+  +  SS+  KPL +     K+ L
Sbjct: 13  ESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVL 72

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +LG E +GL    ++       +   G +  LN+S A  V L
Sbjct: 73  VLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLL 114


>gi|311695356|gb|ADP98229.1| tRNA guanosine-2'-O-methyltransferase [marine bacterium HP15]
          Length = 245

 Score = 42.7 bits (99), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEHIP 188
           R   L ++ D V+ P N+ AI+RS  AF   G+       P E      K+A G+   + 
Sbjct: 16  RQPDLSVLTDQVHKPRNLSAIIRSCDAF---GLANMHVVWPKEGFRAFRKTAGGSYNWVT 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++ +A+Q +   G +      SD               +ILG E  G+       
Sbjct: 73  THTHRSMDEAIQSLKVQGHKLYAAQLSDRAIDFRDVDYTLPCTIILGNEVDGVSVDAAAQ 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G++++LNVS+A A+ L   Q  
Sbjct: 133 ADEHIVIPMMGMVESLNVSSACAIVLSEAQRQ 164


>gi|89900788|ref|YP_523259.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
 gi|89345525|gb|ABD69728.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
          Length = 264

 Score = 42.7 bits (99), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P + A++     ++LD V D  N+G+ILRSA AF    +I  K  +   S  + ++  GA
Sbjct: 105 PLVAALQPVMASVILDRVQDAGNVGSILRSASAFGFKQVIALKGTAALWSPKVLRAGMGA 164

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKG 239
             H     I  +  A   + +     +  SS     L Q I N  +    A  LG EG+G
Sbjct: 165 --HWGLQLIEGVALADLALLA--VPIVVTSSHRGSYLHQAIANQALPMPCAWALGHEGQG 220

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  + +  A     +  PG  ++LNV+ AAA+ L+
Sbjct: 221 VSAELEALARLHVRIAQPGGEESLNVAAAAAICLH 255


>gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
 gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score = 42.7 bits (99), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  HN+ AI+RSA A    GI       P     L  S SG  ++   
Sbjct: 16  RQIDLTLCLDEVHKHHNLSAIVRSADAV---GIHHIHSVWPEGGKRLTSSTSGGSKNWTE 72

Query: 190 IRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ALILGAEGKGLRP 242
             I + + DA+  + S   +T  +   +    EQ +    I      A+ILG E  G+  
Sbjct: 73  NHIHHTVEDAIATIRS---RTPNVQILATHFSEQAVDFRAIDYTRPTAIILGQEKFGISD 129

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    A     + M G++++LNVS AAA+ LY  Q
Sbjct: 130 QALALADQHIIIPMVGMVQSLNVSVAAAIILYEAQ 164


>gi|257146499|emb|CAX30787.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Mocydia crocea]
          Length = 239

 Score = 42.7 bits (99), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           + A+R   L + L++V+ PHNI A++R+A A    GI          S+    +A+    
Sbjct: 12  VSAMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSN 68

Query: 186 HIPYIRI-SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           H   ++  + + + +    + G Q +    ++      Q        +ILG E  G+  +
Sbjct: 69  HWVKVKTHATIENTISTCKAAGMQILAAHLTNQAIDFRQIDYTQPTCIILGQERAGISKQ 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               A    H+ M G++++LNVS A+A+ LY  Q
Sbjct: 129 ALALADHNIHIPMMGMVQSLNVSVASALILYEAQ 162


>gi|157138295|ref|XP_001664217.1| hypothetical protein AaeL_AAEL013974 [Aedes aegypti]
 gi|108869532|gb|EAT33757.1| conserved hypothetical protein [Aedes aegypti]
          Length = 451

 Score = 42.7 bits (99), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 19/176 (10%)

Query: 122 LSPTLDAVRN-------------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTK 166
           L PTL+ + N               L++V   VN   N+G + RS+  F+    I  + K
Sbjct: 273 LEPTLELLTNLPEKLRLKKKGNVEGLIVVASLVNRAPNLGGLARSSEIFAVKQYIVNSLK 332

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK 225
                E   L+ +A   L ++  ++   + D L +M S G+  +G   +   +P++Q   
Sbjct: 333 DLENKEFQALSMTAEKWL-NVAELKSFQIVDYLLEMKSKGYSVVGAEQTTGSRPIQQIEF 391

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
             +  L+LG E +GL          +A +   G++++LNV    A+ +  Y  Q+H
Sbjct: 392 PKRSILVLGHEKEGLPAHIISHLDIIAEIPQFGVVRSLNVHVTGAIFMWEYAKQHH 447


>gi|284045070|ref|YP_003395410.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
 gi|283949291|gb|ADB52035.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
          Length = 245

 Score = 42.7 bits (99), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + L  + DP N+G +LRSA+AF    +      +        +++ GA+  +P  R S
Sbjct: 97  LCVYLHGIADPGNVGTVLRSALAFGAASVALGPGCADPFGPKAVRASMGAVFQVPLARAS 156

Query: 194 NLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
               AL         TI L + +   PL   +  +   L++GAE  GL     E     A
Sbjct: 157 GDVAALPG------TTIALDAHAGSGPLHGPL-GEPATLLIGAERAGLPEALLEACDRTA 209

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            +  P   ++LN + AA +ALY
Sbjct: 210 RI--PIRSESLNAAMAATIALY 229


>gi|190893165|ref|YP_001979707.1| RNA methylase [Rhizobium etli CIAT 652]
 gi|190698444|gb|ACE92529.1| probable RNA methylase protein [Rhizobium etli CIAT 652]
          Length = 274

 Score = 42.7 bits (99), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 13/196 (6%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQG-LAL------ETAPLLSPTLDAVRNSQLLMVL 138
             P   PV       +  IVG   +H+G LAL      + A L+    DA+    L++V 
Sbjct: 76  RFPADVPVYVAEADALAGIVGFH-LHRGVLALGRREERDGAALV----DALPERALVLVG 130

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             +++  N G++ R+A AF  D ++  +           + + G++  +P+ R     D 
Sbjct: 131 CGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLRVPHRRGGKALDL 190

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   GF    LS   K  +       ++AL++G EG+GL P+        A +    
Sbjct: 191 LLALAERGFAIWTLSPHGKTDIRAIPAAARMALVVGTEGEGL-PEALLARFHSARIPQSD 249

Query: 259 IIKALNVSNAAAVALY 274
            + +LN + A  +AL+
Sbjct: 250 ELDSLNAATATGIALF 265


>gi|1717813|sp|P52393|TSNR_STRLU RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
           Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
           rRNA methylase; AltName: Full=Thiostrepton-resistance
           methylase
 gi|763508|gb|AAA99931.1| rRNA methyltransferase [Streptomyces laurentii]
          Length = 270

 Score = 42.7 bits (99), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRIS 193
           +++LD V    NIGAI+R+  A    GI+             L +++ G +  +P + ++
Sbjct: 118 VVLLDGVKIVGNIGAIVRTRSALGAAGIVLVDSGLGTIADRRLIRASRGYVFSLPIV-LA 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
              +AL      G + +   +D K  + E +  ++++ L+ G+E  G   +    AT   
Sbjct: 177 TRDEALAFFRDGGMRPVVFEADGKLSIGELDGIDERLVLVFGSEKTGPSGEFAGVATESV 236

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M    ++LNVS +A +AL+
Sbjct: 237 SIPMNPAAESLNVSVSAGIALH 258


>gi|260220953|emb|CBA29034.1| hypothetical protein Csp_A10120 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 256

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD V D  N+G+ILRSA AF    ++  K  +   S  + ++  GA  H     I  L
Sbjct: 115 VILDRVQDAGNVGSILRSAGAFGFRQVLALKGSAALWSPKVLRAGMGA--HFGLRLIEGL 172

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              LQ + +     +  SS     +++       A  +G EG+G+       A+  A + 
Sbjct: 173 E--LQDLDALKVPLVVTSSHQGDLVQKLDLPHPCAWAMGHEGQGVSEALMAKASVFARIG 230

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
            PG  ++LNV+ AAA+ L+ +    A
Sbjct: 231 QPGGEESLNVAAAAAICLHASSLKLA 256


>gi|298208325|ref|YP_003716504.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
 gi|83848246|gb|EAP86116.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
          Length = 264

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 37/159 (23%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGAL----- 184
           L+++ +    P NIGA+LR+A A + D +I     T  Y+P+    + +S+ G +     
Sbjct: 116 LILIAEAPEKPGNIGALLRTADAANVDAVIIANPKTDLYNPN----IIRSSVGCVFTNQV 171

Query: 185 ------EHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
                 E I +++   ++    ALQ    +  Q    ++               A+++G 
Sbjct: 172 AVGTTTEIISFLKKQKVNIYCAALQASEHYHLQDFTTAT---------------AIVVGT 216

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E  GL  + ++ AT    + M G I ++NVS AA + +Y
Sbjct: 217 EATGLSDEWRKNATQNIIIPMQGEIDSMNVSVAAGILIY 255


>gi|170743299|ref|YP_001771954.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168197573|gb|ACA19520.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 269

 Score = 42.7 bits (99), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G + R+A AF  D ++              + ++G    +P+ R+ +    L      
Sbjct: 132 NVGGLFRNAAAFGADAVLLDAATCDPLYRKAIRVSAGTCLTLPFARLPDGEALLALCERH 191

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   + L+    + + Q     +  L+LG EG GL       A  +     PG + +LNV
Sbjct: 192 GIVPLALTPGGGEEIAQLPPLPRAMLLLGTEGTGLPDALMARARRVRIAMAPG-VDSLNV 250

Query: 266 SNAAAVALY 274
           + A AVAL+
Sbjct: 251 AAAGAVALH 259


>gi|296119026|ref|ZP_06837599.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968124|gb|EFG81376.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 216

 Score = 42.4 bits (98), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 15/154 (9%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +D  R+S  + + +  ND  NIG ++R+A AF+ + +    R   +    +       LE
Sbjct: 60  IDTRRHSLHIAIENFENDA-NIGTVVRTANAFAVNTVHIVGRRRWNRRGAMVTDRYQHLE 118

Query: 186 HIPYIRISNLTDALQKMHSWGFQ-TIGL----SSDSKKPLEQEIKNDKIALILGAEGKGL 240
           H          D + ++ +W  +  I +    ++    PLE     ++  L+ G EG G+
Sbjct: 119 H---------HDTVTELMAWAREHEIAVVAIDNTPGSVPLETAQLPERCLLLFGQEGPGV 169

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + QE+A     +   G  +++N   AA +A++
Sbjct: 170 TAEAQESAEMTCSIAQFGSTRSINAGVAAGIAMH 203


>gi|302336862|ref|YP_003802068.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301634047|gb|ADK79474.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 289

 Score = 42.4 bits (98), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 12/167 (7%)

Query: 120 PLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           PL     + VR   +L + LD +  P N+G+I R+A +F    I  +   +        +
Sbjct: 104 PLEEGGCEQVRKIIELDLYLDDIRSPFNVGSIFRAAESFGVRKIFLSPGSADPRHPRAQR 163

Query: 179 SASGALEHIPYIRISNLTDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           SA G ++ +P+ R S      ++M  H+   + + L +      E       I L++G+E
Sbjct: 164 SAMGCVDIVPWCRSS-----FEEMQTHTTSNKIVALETGGCPLHEFHFPAGGI-LVIGSE 217

Query: 237 GKGLRPKTQETAT---SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             G+ P   E A+       +   G   +LNVS A  + L+   + F
Sbjct: 218 ELGVSPALMEQASRSGGAVSIETGGRKGSLNVSVATGIVLHAWFSQF 264


>gi|305665198|ref|YP_003861485.1| putative SpoU rRNA methylase family protein [Maribacter sp.
           HTCC2170]
 gi|88709950|gb|EAR02182.1| putative SpoU rRNA methylase family protein [Maribacter sp.
           HTCC2170]
          Length = 176

 Score = 42.4 bits (98), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 75/149 (50%), Gaps = 13/149 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-----LAKSASGALEHIP 188
           +++VLD++   +NIG++ R+A AF     +  K Y    +A+     + K+A GA E + 
Sbjct: 25  IILVLDNIRSLNNIGSVFRTADAF-----LIEKIYLCGITAIPPHKDIRKTALGATESVS 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQ 245
           +    +  + ++++ +   +   +  +D+ + L + +  K  K AL+ G E KG+  +  
Sbjct: 80  WEYRKDTLELIKELQADDCEIAAVEQADNSQMLNEFLIQKTSKYALVFGNEVKGVSQEVV 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  +  +   G   +LN+S +A + ++
Sbjct: 140 SASDVVLEIPQFGTKHSLNISVSAGIVIW 168


>gi|332521021|ref|ZP_08397481.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043551|gb|EGI79747.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 266

 Score = 42.4 bits (98), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189
           L++V +    P NIGAILR+A A + D +I     T  Y+P+    + +S+ G L     
Sbjct: 118 LILVAEAPEKPGNIGAILRTADAANIDAVIIANPKTDLYNPN----IIRSSVGCL-FTNQ 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I   +    +  ++S G           +   ++      A+++G E  GL    +  A 
Sbjct: 173 IATGSTEAIINFLNSKGINIYAAILQESQEYHKQDFTTPTAIVVGTEATGLSNYWRNAAK 232

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G I ++NVS AA + ++
Sbjct: 233 KNIKIPMQGAIDSMNVSVAAGILIF 257


>gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 281

 Score = 42.4 bits (98), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 25/153 (16%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPS--ESAV----LAKSASGA 183
           L+++ +    P NIGA+LR+A A + D +I     T  Y+P+   S+V      K A+G 
Sbjct: 135 LILIAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSSVGCVFTTKIATGT 194

Query: 184 L-EHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             E I Y++  N+      +  S  + T+  +S S             A+++G E  GL 
Sbjct: 195 TSEIIAYLKEHNIATYCAALTASKIYTTVDYTSGS-------------AIVVGTEATGLS 241

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +    +     + M G I ++NVS AAAV ++
Sbjct: 242 KEWLSNSNQNIIIPMEGQIDSMNVSVAAAVVIF 274


>gi|296328847|ref|ZP_06871358.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153968|gb|EFG94775.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 256

 Score = 42.4 bits (98), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192
           L++LD V+DP N+G I+R   A +   II TK    + +  + ++  G++ ++   Y+  
Sbjct: 108 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 167

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251
           S + + L++ +   +  I    D    L  +I+  +K A+I G EG G+           
Sbjct: 168 SEIINFLKENN---YSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGISDDFINITDYK 224

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + +    ++LNV+ A  + LY
Sbjct: 225 TIIPILSNTESLNVAVATGIILY 247


>gi|149196456|ref|ZP_01873511.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
 gi|149140717|gb|EDM29115.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
          Length = 265

 Score = 42.4 bits (98), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+V   +  P N+G I+RSA     DG+I   + +   +  +  +++G    +P    +
Sbjct: 118 LLVVAQSIEKPGNLGTIIRSADGTGADGLILCDKCTDLFNPNVITASTGMCFSLPIAEAA 177

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +  D +  +       +  +  + K          IA+I+GAE  GL  +  + ++    
Sbjct: 178 S-QDTINYLKENNITILSATPHADKLYTDVDMTGPIAVIVGAEQYGLSEEWMKQSSINVK 236

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M G   +LNV+ A  + LY
Sbjct: 237 IPMLGKADSLNVATATTLLLY 257


>gi|170780953|ref|YP_001709285.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155521|emb|CAQ00633.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 218

 Score = 42.4 bits (98), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           NIG+I+RSA AF+ D + I  +R      A++       + H      + + D ++    
Sbjct: 84  NIGSIVRSANAFAADTVHIVGRRRWNKRGAMVTDRYQHVVHH------ATIADLVEWARG 137

Query: 205 WGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G   I + + D    LE     ++  L+ G EG GL  +    A     +   G  +++
Sbjct: 138 EGLPIIAIDNVDGSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADMTVAISQFGSTRSI 197

Query: 264 NVSNAAAVALY 274
           N S AAAV ++
Sbjct: 198 NASAAAAVVMH 208


>gi|302843184|ref|XP_002953134.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
           nagariensis]
 gi|300261521|gb|EFJ45733.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
           nagariensis]
          Length = 182

 Score = 42.4 bits (98), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 22/177 (12%)

Query: 115 ALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSP 170
           A E  P   P   A   +     ++   V+  HNIG I+RSA AF    +  + +++++ 
Sbjct: 3   AAEELPAAEPCSSASGTAGPPCFIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNT 62

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLS-SDSKKPLEQE--IKN 226
             S        G+  H+ +     L   +Q +    G + +G+   +   P+ +     +
Sbjct: 63  FGS-------HGSDAHVAFKHFDTLQQCVQHLKDVEGCRVLGIEICEGALPVHEHPFTGS 115

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHL--HMPGIIKALNVSNAAAVALYITQNHFA 281
              A +LG EG+GL  +         ++  H PG   +LNV+ AA++ L+    HFA
Sbjct: 116 SPTAFLLGNEGQGLSERQMALCDGFVYIPQHGPG-TASLNVAVAASIVLH----HFA 167


>gi|270001605|gb|EEZ98052.1| hypothetical protein TcasGA2_TC000457 [Tribolium castaneum]
          Length = 1259

 Score = 42.4 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 29/228 (12%)

Query: 68   IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            IF L+  KNA++  +W+        +KTV      K +        +    AP+ + T+ 
Sbjct: 1032 IFYLIPRKNAVSATEWEN-------LKTVSDWEHFKFISFNHSDNNIQETYAPITTHTIA 1084

Query: 128  A------------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKR 167
            +                   + +  ++V   +    N+G + R+   F    I+  T K 
Sbjct: 1085 SDNIQKKITPWKDFLSTSPSQENNFILVTTLIEKSTNLGGLSRTCEVFGIKQIVMRTAKI 1144

Query: 168  YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
             S  E   L+ S+  ++E I  ++  +L   +  M + G+  +G    S+       + D
Sbjct: 1145 ISDKEFKSLSMSSENSVE-ILEVKPEDLASFILNMKAQGYSVVGAEQTSESVKLDAFRFD 1203

Query: 228  -KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K  L+LG E +G+ P           +   G++++LNV  A A+ ++
Sbjct: 1204 KKTVLVLGNEKEGIPPDLIPLLDHCIEIPQFGLVRSLNVHVAGAIVIW 1251


>gi|148271834|ref|YP_001221395.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829764|emb|CAN00682.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 219

 Score = 42.4 bits (98), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           NIG+I+RSA AF+ D + I  +R      A++       + H      + + D ++    
Sbjct: 85  NIGSIVRSANAFAADTVHIVGRRRWNKRGAMVTDRYQHVVHH------ATIDDLVEWARG 138

Query: 205 WGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G   I + + D    LE     ++  L+ G EG GL  +    A     +   G  +++
Sbjct: 139 EGLPIIAIDNVDGSVLLETTRLPERCVLVFGQEGPGLSDEAVAAADMTVAISQFGSTRSI 198

Query: 264 NVSNAAAVALY 274
           N S AAAV ++
Sbjct: 199 NASAAAAVVMH 209


>gi|116670041|ref|YP_830974.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116610150|gb|ABK02874.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 298

 Score = 42.4 bits (98), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 32/179 (17%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLA 177
           L   LDA    +L+ VL  V DP N G +LR+A A   D ++ T      Y+P       
Sbjct: 121 LEAVLDA--GPRLIAVLCQVRDPGNAGTVLRAADAAGADAVVLTASSVDIYNPKA----V 174

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------- 228
           +S +G+L H+P +   +L+D        G     L++D    L+ +   D+         
Sbjct: 175 RSTAGSLFHLPVVLGVDLSDLATACRERGIGV--LAADGYGQLDLDQLQDENAARRLGNP 232

Query: 229 -----------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       A + G E +GL       A     + + G  ++LNV  AA V LY +
Sbjct: 233 GAESAYDLGRPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNVGTAATVCLYAS 291


>gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
 gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
          Length = 284

 Score = 42.4 bits (98), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 8/147 (5%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +++L+ LD V DP N+G +LR+A A    G++         S    ++  G++  +P  R
Sbjct: 133 NEVLVALDRVRDPGNLGTVLRTADAVGAKGVVLVGETVDPFSLEAVRATMGSIFAVPVSR 192

Query: 192 ISNLT----DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           +         A  +    G    G ++D +KP   +  +    L++G E  GL       
Sbjct: 193 VGEAAFIEWRAGCRAPLIGTHMSG-ATDYRKP---DYASKGSVLVMGNEQAGLTDALANA 248

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++  +   G   +LN++ A  V L+
Sbjct: 249 CDTLVRIPQVGRADSLNLAVATGVMLF 275


>gi|313157844|gb|EFR57254.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 227

 Score = 42.4 bits (98), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 10/153 (6%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGAL 184
           A+R   + ++ +++    N  A++R   AF    + T +   R+ P+   V      G  
Sbjct: 36  AMRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCRFEPNPDIV-----RGTD 90

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           + +   R  +  +AL  + S G++ +  +   +   P   ++     AL+ G E  G+  
Sbjct: 91  QWVDVRRHPSTGEALAALRSAGYRIVATTPHREDVTPETFDVAAGPFALVFGTEHAGISD 150

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +    A     + M G++++LNVS +AA+ +Y+
Sbjct: 151 EVIAGADEFLRIPMCGMVESLNVSASAAILIYM 183


>gi|260803697|ref|XP_002596726.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
 gi|229281985|gb|EEN52738.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
          Length = 309

 Score = 42.4 bits (98), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 17/111 (15%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           LDW           TV PQ +  I  +  V++        L +P         L ++ D+
Sbjct: 74  LDWS---------DTVTPQKVIAIFTRPDVNR--------LYTPEYADAELLPLTLICDN 116

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + DP N+G I+RSA A  C  ++ TK       + + ++ + A  H+P I+
Sbjct: 117 IRDPGNMGTIIRSAAAAGCQKLLVTKGCVDVWESKVLRAGASAHFHLPIIK 167


>gi|113868019|ref|YP_726508.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
 gi|113526795|emb|CAJ93140.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
          Length = 260

 Score = 42.4 bits (98), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  Q  ++LD V D  N+G+ILRSA A            + + S    ++  GA  H+  
Sbjct: 110 RIEQDCIILDGVQDAGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLRAGMGANFHLNI 169

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +    L     ++       +  SS +   +        +A ++G EG G+        T
Sbjct: 170 VEHCTLESLAPRL---AVPLLATSSHADAAVFDTDLRGPVAWVVGNEGAGVSDGWMAHVT 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               +  PG +++LNV+ A A+ L+
Sbjct: 227 RKVGIPQPGGLESLNVAAATAICLF 251


>gi|294506881|ref|YP_003570939.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
           M8]
 gi|294343209|emb|CBH23987.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
           M8]
          Length = 258

 Score = 42.4 bits (98), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 12/159 (7%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSPSESAVLAKSA 180
           T+ A R   ++ V++ + +  N+ A++RSA A     +        RY  S+     ++A
Sbjct: 59  TVVANRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQDMHVVSGEHDRYKHSQ-----RTA 113

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGK 238
            GA   +        T     +   G++ +   L +D+  P+         AL+ G E  
Sbjct: 114 QGAQHWLDVWHWDAPTACATHLQDAGYRVVAMHLHADTV-PIRDLDFTQPTALVFGNEDA 172

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G+     E + +   + +PG  ++ NVS AAAVALY  Q
Sbjct: 173 GVTDTMLEASDAACEVPLPGFTESFNVSVAAAVALYHAQ 211


>gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14]
 gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14]
          Length = 286

 Score = 42.4 bits (98), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 12/150 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIP 188
           +L+ VL HV DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P
Sbjct: 123 RLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKA----VRASVGSLFHLP 178

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKT 244
                 +  A+  +   G + +      +  L+ E+ ++ +    A + G E  GL   T
Sbjct: 179 VAVGVPVEQAVAGLKDAGVRILAADGAGEHDLDDELDDNTMGGPTAWVFGNEAWGLPEDT 238

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A ++  + + G+ ++LN++ AAAV LY
Sbjct: 239 RALADAVVRVPIHGMAESLNLATAAAVCLY 268


>gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 248

 Score = 42.4 bits (98), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKM 202
           P NIG++ R+ +   C  I+  + ++  +   L  +   A   +  IRI   L +AL   
Sbjct: 15  PENIGSVARACLNMGCGQIVLVEPWNWDQGKALPLATHHAGHLLENIRIHGTLAEALAP- 73

Query: 203 HSWGFQTI----GLSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           +S+ + T     G     + P       +EQ     K+A++ G E KGL  +  +    +
Sbjct: 74  YSFAYGTTARTGGWRQGIQTPEEAAPRIIEQSNAGAKVAIVFGPEDKGLTNEETDLCNQL 133

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +     + +LN+S A  V LY
Sbjct: 134 LTIPTTDNLTSLNLSQAVMVVLY 156


>gi|257146503|emb|CAX30790.1| tRNA (Guanosine-2'-O-)-methyltransferase [SBR proteobacterium]
          Length = 239

 Score = 42.4 bits (98), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L++V+ PHNI A++R+A A    GI          S+    +A+    H 
Sbjct: 14  AMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSNHW 70

Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
             I+  + + +A+    + G Q +    +++    ++I   +   +ILG E   +  +  
Sbjct: 71  VKIKTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A    H+ M G++++LNVS A+A+ LY  Q
Sbjct: 131 ALADHNIHIPMMGMVQSLNVSVASALILYEAQ 162


>gi|219683722|ref|YP_002470105.1| rRNA methylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621372|gb|ACL29529.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 292

 Score = 42.4 bits (98), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTD 197
            + DP N G ++RSA A  CD ++         +  + ++ +G+L H+P + +      D
Sbjct: 135 QMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFFD 194

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQETATS 250
             ++  +         ++ K P+        +E+     A++ G E +GL  +  +    
Sbjct: 195 LCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECAM 254

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
              + + G  ++LN+  +AAV L
Sbjct: 255 SVSIPIYGKAESLNLGTSAAVML 277


>gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 279

 Score = 42.4 bits (98), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 16/151 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L+ VL HV DP N G +LR A A   D ++ T      Y+P       +++ G+L H+P 
Sbjct: 123 LVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKS----VRASVGSLFHLPV 178

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPK 243
                + +A++ +   G +   L++D     + + +          A + G E  GL  +
Sbjct: 179 AVGVPVEEAVRGLRDAGVRI--LAADGAGEDDLDDELDAGTMGGPTAWVFGNEAWGLPEE 236

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           T+  A ++  + + G  ++LN++ AAAV LY
Sbjct: 237 TRALADAVVRVPIHGKAESLNLATAAAVCLY 267


>gi|237802828|ref|YP_002888022.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274062|emb|CAX10856.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
          Length = 269

 Score = 42.4 bits (98), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++++    P NIGA+LR A     DG+I        Y+P+    + +S+ G +  +P  +
Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGIVFTMPVWQ 175

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            S L + L  +H   +Q    +  ++     +     + ++ G+E  GL P     +   
Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCN 234

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             L M G   +LN+S++ A   Y
Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257


>gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
          Length = 228

 Score = 42.4 bits (98), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 27/169 (15%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------------ITTKRYSPSESA 174
           A R   L ++++ V+  HN  A+LRS     CD +             I T+  +PS   
Sbjct: 14  ARRQPDLTVLMERVHKWHNFSAVLRS-----CDAVGVLEAHLIPAAHGIPTEDQNPSRHT 68

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALIL 233
             A ++  A + +      +   A   + S GF         K    +E+   +   ++L
Sbjct: 69  --AATSGSAAKWVGLRTYPDTPSAFADLRSRGFVIYAAHFSHKAIDYREVDYTRPTCILL 126

Query: 234 GAEGKGLRPKTQETAT-SMAHLHMP--GIIKALNVSNAAAVALYITQNH 279
           G E  G+   T+E AT +  H+ +P  G++++LNVS AAAV L+  Q  
Sbjct: 127 GTEKWGV---TEEAATLADGHIVIPMMGMVQSLNVSVAAAVILFEAQRQ 172


>gi|209878796|ref|XP_002140839.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
           RN66]
 gi|209556445|gb|EEA06490.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
           RN66]
          Length = 199

 Score = 42.4 bits (98), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 11/151 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  ++L +++   N GA+LRSA  F    ++   +       +      G L +I     
Sbjct: 13  KFYLILMNISKRQNFGALLRSACGFGVSEVLAVGK-----RKLRTFGNKGTLPYISLTYY 67

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             L + ++ +H+     +G+  +++  P+         A ILG EG GL  +  +    +
Sbjct: 68  DTLEEVVEIVHAEEMDIVGIEINENSLPVYPHPFRRSTAFILGNEGTGLSQRQIDICDYL 127

Query: 252 AHLHMPGIIKA-LNVSNAAAVALYITQNHFA 281
            ++ M G   A LNV+ A ++  +    HFA
Sbjct: 128 VYIPMYGSGTASLNVAIAGSILFH----HFA 154


>gi|91214829|ref|ZP_01251802.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
 gi|91187256|gb|EAS73626.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
          Length = 171

 Score = 42.4 bits (98), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 9/148 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYI 190
           S++ ++L+ ++ P N+G++ R++ AF    I I     S  +S  L +++  A  ++   
Sbjct: 21  SEINVLLERLDSPANLGSVFRNSEAFGIVNIWIHEANRSYLKSNRLKRTSRSAEFNLN-- 78

Query: 191 RISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            I    D    + ++   TIG+    +S++    ++ +K  KI L+LG E  G+  +T  
Sbjct: 79  -IHFYEDEASILDTFEGTTIGIEITKNSENLSSFKKGLK-SKILLVLGNEKLGINSETLN 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                 H+ M G   +LNV+    +ALY
Sbjct: 137 RLDRSYHIKMFGTNSSLNVAQTLGIALY 164


>gi|254294115|ref|YP_003060138.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254042646|gb|ACT59441.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 275

 Score = 42.4 bits (98), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 123 SPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           + TL+A+  S  +  + L    DP N+G ILR+A A   DG+I  ++     S    ++ 
Sbjct: 110 TTTLEALETSGKKRFIALYEARDPGNLGTILRTADAAGIDGVILVEQCCDPFSVECVRAT 169

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GAL     I +++ T+          +    S +     +Q   + K  +++G E  G+
Sbjct: 170 MGAL-FSNNIVLASFTEFDNWRRKANIKMAAASVNGTMRHDQAEYSSKSVILMGNEQSGI 228

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +     +  + M G   +LN++ A A+  Y
Sbjct: 229 PEAAENACDILIKIPMAGAADSLNLAQATAIMTY 262


>gi|89889903|ref|ZP_01201414.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7]
 gi|89518176|gb|EAS20832.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7]
          Length = 160

 Score = 42.4 bits (98), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 11/151 (7%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGAL 184
           +D +      + + H   P N+G + RSA       + T  KRYS       A      +
Sbjct: 3   IDQLEPGYFGIGIQHGKTPENLGVLWRSAQNLGASFVFTVGKRYSKQ-----ACDTHDIV 57

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK 243
           + +PY       D    +   G   IG+  D++    QE ++ +    +LGAE  GL  +
Sbjct: 58  KAMPYFHYDTFEDFYNHLPK-GAMIIGVELDNRAIDLQEFRHPRNCVYLLGAEDHGLTNE 116

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E +  +     P   K+LNV+ A ++ +Y
Sbjct: 117 AIEKSHHLIKFDTP---KSLNVAVAGSIIMY 144


>gi|221066100|ref|ZP_03542205.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
 gi|220711123|gb|EED66491.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
          Length = 263

 Score = 42.4 bits (98), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V D  N+G+ILRSA AF    I+  K  +   S  + ++  GA   +  +  +++
Sbjct: 118 VVLDRVQDAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHFGLHLVEAASV 177

Query: 196 TD--ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D  ALQ         +  SS     + +       A  +G EG+G+     E A     
Sbjct: 178 EDVKALQ------VPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGEALMEMAQRRIS 231

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +  PG  ++LNV+ AAA+ L+
Sbjct: 232 IAQPGGEESLNVAAAAAICLH 252


>gi|46446084|ref|YP_007449.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399725|emb|CAF23174.1| putative tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 246

 Score = 42.4 bits (98), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD++   HN+G+I+R+  AFS   I  + +   +    +   + GA + +   +  +L
Sbjct: 92  IYLDNLRSAHNVGSIIRTVEAFSLGSIYFSTQTPYTNHKQVQNVSMGAYQWVKCYQNEDL 151

Query: 196 TDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            D  Q +       I L +S+    L + I  +   L++G E  G   +    A  +  +
Sbjct: 152 NDLTQPI-------IALETSEEAINLYEFIFPEHFTLVVGNEEYGCSQEILTKAHYLIEI 204

Query: 255 HMPGIIKALNVSNAAAVA 272
            + G   +LNV+NA A+ 
Sbjct: 205 PLRGRKNSLNVANAFAIT 222


>gi|83815313|ref|YP_445016.1| rRNA methylase [Salinibacter ruber DSM 13855]
 gi|83756707|gb|ABC44820.1| rRNA methylase [Salinibacter ruber DSM 13855]
          Length = 247

 Score = 42.4 bits (98), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 12/159 (7%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSPSESAVLAKSA 180
           T+ A R   ++ V++ + +  N+ A++RSA A     +        RY  S+     ++A
Sbjct: 48  TVVANRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQDMHVVSGEHDRYKHSQ-----RTA 102

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGK 238
            GA   +        T     +   G++ +   L +D+  P+         AL+ G E  
Sbjct: 103 QGAQHWLDVWHWDAPTACATHLQDAGYRVVAMHLHADTV-PIRDLDFTQPTALVFGNEDA 161

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G+     E + +   + +PG  ++ NVS AAAVALY  Q
Sbjct: 162 GVTDTMLEASDAACEVPLPGFTESFNVSVAAAVALYHAQ 200


>gi|19704210|ref|NP_603772.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714434|gb|AAL95071.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 261

 Score = 42.4 bits (98), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192
           L++LD V+DP N+G I+R   A +   II TK    + +  + ++  G++ ++   Y+  
Sbjct: 113 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 172

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251
           S + + L++ +   +  I    D    L  +I+  +K A+I G EG G+           
Sbjct: 173 SEIINFLKENN---YSIISTYLDKTAILYNKIELKEKNAVIFGNEGNGISDDFINITDYK 229

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + +    ++LNV+ A  + LY
Sbjct: 230 TIIPILSNTESLNVAVATGIILY 252


>gi|322488285|emb|CBZ23531.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 545

 Score = 42.4 bits (98), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++ L+ + DP NIG ILR+A  F  D +I +++ + S +A ++++++G LEH+
Sbjct: 253 VLFLERIVDPANIGGILRTAFFFGVDHVILSRQCA-SCTAAVSRTSTGFLEHL 304


>gi|13507481|gb|AAK28596.1|AF349097_2 hypothetical protein [uncultured bacterium]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 21/180 (11%)

Query: 116 LETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTK 166
           +E A    PTL A        R   L+ V+++  D  NIG I+R+  A   +   +I++K
Sbjct: 1   MEEAKKSKPTLRARANKVKHARCKNLIAVIENPEDIRNIGTIIRNVNALGVEKAYVISSK 60

Query: 167 RYSPS------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
              P       E + L   ++ A++     +  +    L  +   GF ++  S  +K   
Sbjct: 61  ATLPDNWQDMREKSKLNAISASAVKWSFVKKFKDSESCLDHLEKNGFVSVVTSPHTKGRK 120

Query: 221 E------QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     K  K+A+  G EG G+     E +    ++ M GI+++LN+  ++ + LY
Sbjct: 121 NVVLHEADYTKYTKLAVWFGTEGTGISQVALERSELCVNIPMVGIVESLNLGTSSGIVLY 180


>gi|299532311|ref|ZP_07045704.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
 gi|298719719|gb|EFI60683.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
          Length = 263

 Score = 42.4 bits (98), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V D  N+G+ILRSA AF    I+  K  +   S  + ++  GA   +  +  +++
Sbjct: 118 VVLDRVQDAGNVGSILRSASAFGFTQILALKGTAALWSQKVLRAGMGAHFGLHLVEAASV 177

Query: 196 TDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D        G Q   +  SS     + +       A  +G EG+G+     E A+    
Sbjct: 178 DDVQ------GLQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMASHRIS 231

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +  PG  ++LNV+ AAA+ L+
Sbjct: 232 IAQPGGEESLNVAAAAAICLH 252


>gi|110597515|ref|ZP_01385801.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340834|gb|EAT59308.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 215

 Score = 42.4 bits (98), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 9/152 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL---AKSASGALEH 186
           R   L +V+D+VN  HN+ AI+RS     CD +   + ++ S    +     +A+GA + 
Sbjct: 17  RQPDLTVVMDNVNKAHNLSAIIRS-----CDTVGIGELHAVSYRKSIYTEQDAAAGASKW 71

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
                   +    +K+     Q +  SS +     + I      AL++GAE  G+     
Sbjct: 72  TTLHLYHEMATVYKKLSDQNMQILVASSSAGCMDFRNIDYTMPTALVVGAEWDGISEAAL 131

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A     + M G++++LNVS A A+ L+  Q
Sbjct: 132 HGADQTIAIPMFGMVESLNVSVATALILFEAQ 163


>gi|297570796|ref|YP_003696570.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931143|gb|ADH91951.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 226

 Score = 42.4 bits (98), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 78/158 (49%), Gaps = 12/158 (7%)

Query: 125 TLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           ++DA+R+      ++L + ++++    NIG+I+R+  AF+  G+    +   +    L  
Sbjct: 55  SVDAIRDDLAKTSTKLHIAIENLEHDLNIGSIVRTGNAFNVSGVHIVGKKKWNRRGALVT 114

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEG 237
                + H  +  +S+L +  ++     +Q + + + +   P+ +    ++  LI G E 
Sbjct: 115 DRYLNVHH--HAEVSSLVEWAREND---YQLVAVDNMEGSTPIAETALPERAVLIFGQES 169

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            GL  +    A S  ++   G  +++NV+ AAA+++++
Sbjct: 170 NGLSAELLAAADSAVYIPQYGSTRSMNVAAAAAISMHM 207


>gi|229577450|ref|NP_001153379.1| TAR (HIV-1) RNA binding protein 1 [Mus musculus]
          Length = 1579

 Score = 42.4 bits (98), Expect = 0.084,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 4/146 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190
            S+L++V   ++ P N+G + R+   F    ++       S+      S S A + +P + 
Sbjct: 1420 SRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSDRQFQHLSVS-AEQWLPLVE 1478

Query: 191  -RISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R S L + LQ+  + G+  IG+   ++   L Q    +K  L+LG E +G+     +  
Sbjct: 1479 VRPSQLMNYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQL 1538

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII++LNV  + A+ ++
Sbjct: 1539 DVCVEIPQQGIIRSLNVHVSGALLIW 1564


>gi|326931469|ref|XP_003211851.1| PREDICTED: RNA methyltransferase-like protein 1-like, partial
           [Meleagris gallopavo]
          Length = 375

 Score = 42.4 bits (98), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190
           L+++ D++ DP N+G ILRSA    C+ ++ TK    P E  VL ++  GA   +P +
Sbjct: 154 LVLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVL-RAGMGAHFRVPIV 210


>gi|146299225|ref|YP_001193816.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146153643|gb|ABQ04497.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 242

 Score = 42.4 bits (98), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 16/157 (10%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P  + + NS L++ LD + DP N+G I+R    F    I+ +K     Y+P    V A  
Sbjct: 88  PVENQIINSGLILALDDIRDPGNLGTIMRLCDWFGIKQIVCSKETVDIYNP--KVVQATM 145

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S A  ++ Y+      D    +        G   D     +  +  + I +I+G E  G
Sbjct: 146 GSIARVNVNYV------DLKAFLSQTKLPVFGTFMDGDTIYQSNLPQNGI-IIMGNEANG 198

Query: 240 LRPKTQETATSMAHLHMPGIIK---ALNVSNAAAVAL 273
           +  + ++  T+   +   G ++   +LNV+ A A+ L
Sbjct: 199 ISAEIEKIVTTRLTIPRFGELQKTESLNVATATAIIL 235


>gi|145594669|ref|YP_001158966.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145304006|gb|ABP54588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 299

 Score = 42.0 bits (97), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+M  D    P NIG+++RSA AF   G++ T   +        ++ +G+L  +P +R+ 
Sbjct: 120 LVMAFDRPTTPGNIGSLIRSADAFGAAGVVITGHAADPYDPKSVRATTGSLFTVPVVRVP 179

Query: 194 ------NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +  D+L+       + +G     +  +          +++G E +GL    +++
Sbjct: 180 SHRAVLDWADSLRATRI-PIEIVGTDEHGEVEITAHDLTGPTIIVVGNETRGLSTAWRQS 238

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + + G   +LN + AA V LY
Sbjct: 239 CDRTVRIPITGAASSLNAAAAATVVLY 265


>gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905]
 gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82]
 gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74]
 gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671]
 gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           4343-70]
 gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218]
 gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +       + D
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWVQVKTHRTIGD 58

Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           A+  +   G Q +    SD+     +        +++G E  G+  +    A     + M
Sbjct: 59  AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 118

Query: 257 PGIIKALNVSNAAAVALYITQ 277
            G++++LNVS A+A+ LY  Q
Sbjct: 119 IGMVQSLNVSVASALILYEAQ 139


>gi|291514391|emb|CBK63601.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 243

 Score = 42.0 bits (97), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R   + ++ +++    N  A++R   AF    + T +   P E       A G  + +
Sbjct: 49  SMRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCPFEPN--PDIARGTHQWV 106

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              R ++  +A+  +   G++ +  +   +   P   ++     AL+ G E  G+  +  
Sbjct: 107 DVRRHASTGEAVAALKGAGYRIVATTPHREDATPETFDVGRGPFALVFGTEHAGISDEVI 166

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +A     + M G++++LNVS +AA+ +Y
Sbjct: 167 ASADEFLRIPMCGMVESLNVSASAAILIY 195


>gi|289178492|gb|ADC85738.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 309

 Score = 42.0 bits (97), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTD 197
            + DP N G ++RSA A  CD ++         +  + ++ +G+L H+P + +      D
Sbjct: 152 QMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFFD 211

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQETATS 250
             ++  +         ++ K P+        +E+     A++ G E +GL  +  +    
Sbjct: 212 LCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECAM 271

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
              + + G  ++LN+  +AAV L
Sbjct: 272 SVSIPIYGKAESLNLGTSAAVML 294


>gi|149724758|ref|XP_001502222.1| PREDICTED: similar to RNA methyltransferase-like protein 1 [Equus
           caballus]
          Length = 420

 Score = 42.0 bits (97), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266


>gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431]
 gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +       + D
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWVQVKTHRTIGD 58

Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           A+  +   G Q +    SD+     +        +++G E  G+  +    A     + M
Sbjct: 59  AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 118

Query: 257 PGIIKALNVSNAAAVALYITQ 277
            G++++LNVS A+A+ LY  Q
Sbjct: 119 IGMVQSLNVSVASALILYEAQ 139


>gi|47228934|emb|CAG09449.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1600

 Score = 42.0 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 10/177 (5%)

Query: 113  GLALETAPL-LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            GL  + A L L P   AVR    +  L++V   ++ P N+G + R+   F    ++    
Sbjct: 1422 GLQEQEAELQLVPQQRAVRLGKQHGALVVVASLIDKPTNLGGLCRTCEIFGASVLVLDSL 1481

Query: 168  YSPSESAVLAKSASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            +   +    + S S  L  +P + +    LT+ LQ   + G+  +G+   +     Q+ +
Sbjct: 1482 HHVRDKHFQSLSVSSEL-WLPLMEVKPVQLTEFLQVKKNEGYCIVGVEQTANSRSLQDYQ 1540

Query: 226  -NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
              +K  LILG E +G+     +       +   GII++LNV  +AA+ ++  T+ H 
Sbjct: 1541 FPEKTLLILGNEREGIPANLLQMLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQHL 1597


>gi|22218790|pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
          Length = 274

 Score = 42.0 bits (97), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 24/162 (14%)

Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT---TKRYSP-----SESA 174
           TL+  R S   L++V   +  P N+GA+LRSA A   + ++       YSP     S   
Sbjct: 106 TLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIRNSTGV 165

Query: 175 V--LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           V  L   A+   E + +I+  NL       H+   + +   ++ + P         +A+ 
Sbjct: 166 VFSLRTLAASESEVLDWIKQHNLPLVATTPHA---EALYWEANLRPP---------VAIA 213

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G E +GLR    E A +   + M G   +LNVS +AA+ LY
Sbjct: 214 VGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLY 255


>gi|193213878|ref|YP_001995077.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
           35110]
 gi|193087355|gb|ACF12630.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
           35110]
          Length = 179

 Score = 42.0 bits (97), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 5/159 (3%)

Query: 127 DAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           DA R SQ   + ++  ++    N+G+I R+  A     +I T   +      + K A GA
Sbjct: 16  DAFRESQKHPIYVMFQNIRSMWNVGSIFRTCDAARIQKVIITGYTATPPRPQIDKVALGA 75

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            E + +  +++  +AL  +   G +   L  + +++   E   ++  + L+LG E  G+ 
Sbjct: 76  TETVDWEYVADPLEALADLKDQGVKIAALEITENARNYDELSAEDFPLCLVLGNEVTGID 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  +       +   G   +LNV+ +A +A++     F
Sbjct: 136 DEVLQECDFALEIPQYGTKHSLNVAVSAGIAIFEAVRQF 174


>gi|168056477|ref|XP_001780246.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668300|gb|EDQ54910.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +++ +V   HN+G + RSA AF    II   R   +     A  + GA  H+ +     
Sbjct: 4   FLLVHNVAKRHNLGTLARSATAFGVSEIILVGRKDFN-----AFGSHGATLHLQFRHFQT 58

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L  A++ +        G+  ++    + +       A +LG EG GL  K  E      +
Sbjct: 59  LPAAVKYLKDKNVSICGVEITEGAAGVHKYPFTGSTAFVLGNEGTGLSDKEMEICDFFVY 118

Query: 254 L--HMPGIIKALNVSNAAAVALY 274
           +  + PG   +LNV+ AA++ L+
Sbjct: 119 IPQNGPG-TASLNVTVAASIVLH 140


>gi|255534645|ref|YP_003095016.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340841|gb|ACU06954.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 255

 Score = 42.0 bits (97), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYI 190
           +L V++ +    N  AI+RS  A     I+  +    ++P+            +E +P+ 
Sbjct: 68  VLPVMEDIFQFRNAAAIVRSVEACGFHKIVAMESENEFNPNLRVTKGAETWVEVEKMPH- 126

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETAT 249
              NL ++L ++ + G++ + +S +    +  + +  + +AL+ G E +G+  +  + A 
Sbjct: 127 ---NL-ESLTEIKNRGYKILAVSPEKNATMLPDYQLKEPVALVFGTEKEGVTEEILDFAD 182

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G  ++ NVS AAA+  Y
Sbjct: 183 ETVAIPMYGFTRSFNVSVAAAICFY 207


>gi|255551565|ref|XP_002516828.1| rRNA methylase, putative [Ricinus communis]
 gi|223543916|gb|EEF45442.1| rRNA methylase, putative [Ricinus communis]
          Length = 216

 Score = 42.0 bits (97), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G + RSA AF    +I   R   +     A  + G+  H+ +    +L +A   +  
Sbjct: 16  HNVGTLARSATAFGVTELILVGRRDFN-----AFGSHGSTSHLRFRHFHSLLNARDYLKE 70

Query: 205 WGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA- 262
                 G+  +D   P+ +       A +LG EG GL  K  E      ++   G   A 
Sbjct: 71  KECDICGVEITDGALPVNEHPFKKSTAFLLGNEGTGLSAKECEICDFFVYIPQYGRGTAS 130

Query: 263 LNVSNAAAVALY 274
           LNV+ AA++ L+
Sbjct: 131 LNVTVAASIVLH 142


>gi|195628230|gb|ACG35945.1| hypothetical protein [Zea mays]
          Length = 163

 Score = 42.0 bits (97), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203
           HN+G + RSA AF    ++   R   S     A  + GA  H+ +    +L  AL + + 
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFVSL--ALARAYL 70

Query: 204 --SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI 259
               G    G+  +D  +P+         A + G EG GL  K  E      ++    G 
Sbjct: 71  KDERGCDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGG 130

Query: 260 IKALNVSNAAAVALY 274
             +LNV+ AA++ L+
Sbjct: 131 TASLNVTVAASIVLH 145


>gi|183601746|ref|ZP_02963116.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241190756|ref|YP_002968150.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196162|ref|YP_002969717.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219352|gb|EDT89993.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249148|gb|ACS46088.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250716|gb|ACS47655.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793745|gb|ADG33280.1| rRNA methylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 301

 Score = 42.0 bits (97), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--LTD 197
            + DP N G ++RSA A  CD ++         +  + ++ +G+L H+P + +      D
Sbjct: 144 QMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMDERAFFD 203

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQETATS 250
             ++  +         ++ K P+        +E+     A++ G E +GL  +  +    
Sbjct: 204 LCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTELLDECAM 263

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
              + + G  ++LN+  +AAV L
Sbjct: 264 SVSIPIYGKAESLNLGTSAAVML 286


>gi|126314205|ref|XP_001370297.1| PREDICTED: similar to RNA methyltransferase like 1 [Monodelphis
           domestica]
          Length = 517

 Score = 42.0 bits (97), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P   IS
Sbjct: 214 LLLICDNLRDPGNLGTILRSAAGAGCQKVLLTKGCVDAWEPKVLRAGMGAHFQVPI--IS 271

Query: 194 NL 195
           NL
Sbjct: 272 NL 273


>gi|69249394|ref|ZP_00604959.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
 gi|68194181|gb|EAN08711.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S  G+  H+P ++  +L
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVLQ-KDL 170

Query: 196 TDAL 199
            D +
Sbjct: 171 ADVI 174


>gi|332764147|gb|EGJ94384.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ V+ PHN+ AI+R+A A     +     +  S    +A +A+G+   +       + D
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGSRMRTMASAAAGSNSWVQVKTHRTIGD 58

Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           A+  +   G Q +    SD+     +        +++G E  G+  +    A     + M
Sbjct: 59  AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIILM 118

Query: 257 PGIIKALNVSNAAAVALYITQ 277
            G++++LNVS A+A+ LY  Q
Sbjct: 119 IGMVQSLNVSVASALILYEAQ 139


>gi|21674700|ref|NP_662765.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647908|gb|AAM73107.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 263

 Score = 42.0 bits (97), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 43/84 (51%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ LD V DP N+G I+R+A  F  + +I  +  +   +A   +S++G++  +      
Sbjct: 116 FVVALDDVQDPGNVGTIIRTAAWFGAEAVICGRGTADPYNAKSVRSSAGSIFALAIDTTP 175

Query: 194 NLTDALQKMHSWGFQTIGLSSDSK 217
           +L   L+++ + GF     + D +
Sbjct: 176 DLAKTLRRLQADGFTVAASALDGQ 199


>gi|282890164|ref|ZP_06298694.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499821|gb|EFB42110.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 253

 Score = 42.0 bits (97), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD +    N+G+I+R+  AFS   +  +      E + + K+A G  E +   +   L
Sbjct: 106 IYLDSIRSAFNVGSIIRTVEAFSLGSLYFSPETPCVEHSQVQKTAMGTSEWVTCFKDIPL 165

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           TD  + + +       +S      +   +  +  +L+LG E  G    T + A  +  + 
Sbjct: 166 TDLPKPIIALETSPCAIS------IYDFVFPEVFSLVLGNEEYGCSEATLKQADFLLQIP 219

Query: 256 MPGIIKALNVSNAAAVA 272
           + G   +LNV+NA A+A
Sbjct: 220 LCGRKNSLNVANAFAIA 236


>gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 263

 Score = 42.0 bits (97), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 19/148 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ + DP N+G I+R+A A    G+I         S    ++  G++  +P ++ +  
Sbjct: 121 VALEQIRDPGNLGTIIRTADAAGIGGVILIGDCVDPFSVETVRATMGSVFALPVVKCTR- 179

Query: 196 TDALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              L     W    +G          ++D ++P           +++G E  GL P    
Sbjct: 180 EAFLADRSRWTGSVVGTLLTATHNHRTADYRRP---------TLILMGTEQSGLTPDIAA 230

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
              +   + M G   +LN+S A  + +Y
Sbjct: 231 ACDTHVKIPMRGRADSLNLSVATGIMIY 258


>gi|195644564|gb|ACG41750.1| hypothetical protein [Zea mays]
          Length = 163

 Score = 42.0 bits (97), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203
           HN+G + RSA AF    ++   R   S     A  + GA  H+ +    +L  AL + + 
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFVSL--ALARAYL 70

Query: 204 --SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI 259
               G    G+  +D  +P+         A + G EG GL  K  E      ++    G 
Sbjct: 71  KDERGCDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGG 130

Query: 260 IKALNVSNAAAVALY 274
             +LNV+ AA++ L+
Sbjct: 131 TASLNVTVAASIVLH 145


>gi|297699541|ref|XP_002826840.1| PREDICTED: RNA methyltransferase-like protein 1-like [Pongo abelii]
          Length = 420

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266


>gi|257146522|emb|CAX30805.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Pentastiridius sp.]
          Length = 239

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L++V+ PHNI A++R+A A    GI          S+    +A+    H 
Sbjct: 14  AMRQPDLTVCLENVHKPHNISAVIRTADAV---GIPQIHAIWCKNSSKSLSAAAAGSNHW 70

Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ 245
             ++  + + +A+    + G Q +    +++    ++I   +   +ILG E   +  +  
Sbjct: 71  VKVKTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A    H+ M G++++LNVS A+A+ LY  Q
Sbjct: 131 TLADHNIHIPMMGMVQSLNVSVASALILYEAQ 162


>gi|88802138|ref|ZP_01117666.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
 gi|88782796|gb|EAR13973.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
          Length = 243

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 17/170 (10%)

Query: 31  KKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           K + S +QK     Q  NLF+  G+  V+  L +       L+   N     ++  +LP 
Sbjct: 9   KLITSLSQKKYR--QKHNLFIAEGIKVVNELLQSDFE--VALIFCTN-----EFKTSLPK 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V+ V    ++KI   ++ ++ L+L   P   P    ++NS L++ LD +NDP N+G 
Sbjct: 60  AKIVR-VSETELNKISSLKSPNKVLSLFKIPEDKP----IQNSGLILALDAINDPGNLGT 114

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRISNLTD 197
           I+R    F    +I +K      +  + +++ G+L  I   Y+ + N  D
Sbjct: 115 IIRLCDWFGISQLICSKDTVDCYNQKVVQASMGSLTRISIQYLDLKNYLD 164


>gi|311268037|ref|XP_003131858.1| PREDICTED: RNA methyltransferase-like protein 1-like [Sus scrofa]
          Length = 422

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266


>gi|213962459|ref|ZP_03390721.1| SpoU protein [Capnocytophaga sputigena Capno]
 gi|213954785|gb|EEB66105.1| SpoU protein [Capnocytophaga sputigena Capno]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 15/151 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAF------SCDGIITTKRYSPSESAVLAKSASGA 183
           R +   + ++ V   HN  A++R+   F      S +G     R+      + AK A GA
Sbjct: 28  RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEG-----RFGKR---LDAKIAMGA 79

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRP 242
            + +   R ++    +  + + G+Q +  +         +     K A   G E +GL  
Sbjct: 80  QKWVDVFRYNDTQSCIDTLRTQGYQIVATTPHKNAYFLNDFDITKKSAFFFGTEKEGLSA 139

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +    A +   + M G  ++LN+S A A+ L
Sbjct: 140 QVLSQADTFLKIPMVGFTESLNISVAVAIVL 170


>gi|167629871|ref|YP_001680370.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
 gi|167592611|gb|ABZ84359.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
          Length = 272

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+++D V DP N+G I+R+A A    G++ T          + +   GAL  +P   + 
Sbjct: 117 FLLIVDGVQDPGNLGTIIRTAEAAGVTGVLLTPGTVDPYGPKVIRGTMGALFRLPVATVP 176

Query: 194 NLTDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +       +        +  + D     E       IA+++G+E  G RP   + A    
Sbjct: 177 SAKGLAASLRERDISLAVADARDGVPYFEAPWDRGSIAIVIGSEAHGPRPFWGDLAQLRV 236

Query: 253 HLHMPGIIKALN 264
            + +   +++LN
Sbjct: 237 RIPLAPPVESLN 248


>gi|221134069|ref|ZP_03560374.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola sp. HTCC2999]
          Length = 235

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 10/152 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVL-AKSASGALEH 186
           R + L ++++ V+ PHN+ A++R+  AV      ++  + YS      L A    G  EH
Sbjct: 16  RQTDLTVLMEEVHKPHNVAALIRTCDAVGIHEAHVVWNQNYSLRVGTSLGAHHWVGMHEH 75

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                 S++  A+  +   G Q +  + SD      +       A+ILG E  G      
Sbjct: 76  ------SDIEKAIAHLKGQGMQVLVTNLSDDAVDFREVDYTLPTAIILGQEKFGATKNAI 129

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             A     + M G+  +LNVS AAAV LY  Q
Sbjct: 130 ALADKEIVVPMVGMTVSLNVSVAAAVILYEAQ 161


>gi|315223488|ref|ZP_07865344.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314946523|gb|EFS98515.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEH 186
           + R +   + ++ V   HN  A++R+   F      + + R+      + AK A GA + 
Sbjct: 26  SARTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKR---IDAKIAMGAQKW 82

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQ 245
           +   R ++    +  + + G+Q +  +         +   + K A   G E +GL  +  
Sbjct: 83  VDVFRYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSQQVL 142

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
             A +   + M G  ++LN+S A A+ L
Sbjct: 143 SQADTYLKIPMVGFTESLNISVAVAIVL 170


>gi|226492595|ref|NP_001151868.1| LOC100285504 [Zea mays]
 gi|195650445|gb|ACG44690.1| trmH family tRNA/rRNA methyltransferase [Zea mays]
 gi|238006410|gb|ACR34240.1| unknown [Zea mays]
          Length = 220

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203
           HN+G + RSA AF    ++   R   S     A  + GA  H+ +    +L  AL + + 
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFVSL--ALARAYL 70

Query: 204 --SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGI 259
               G    G+  +D  +P+         A + G EG GL  K  E      ++    G 
Sbjct: 71  KDERGCDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGG 130

Query: 260 IKALNVSNAAAVALY 274
             +LNV+ AA++ L+
Sbjct: 131 TASLNVTVAASIVLH 145


>gi|291402154|ref|XP_002717373.1| PREDICTED: TAR RNA binding protein 1 [Oryctolagus cuniculus]
          Length = 1629

 Score = 42.0 bits (97), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            NS+L++V   ++   N+G + R+   F    +        S+      S S A + +P +
Sbjct: 1460 NSRLIVVASLIDKATNLGGLCRTCEVFGASVLAVGNLQCVSDKQFQHLSVS-AEQWLPLV 1518

Query: 191  RIS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +    L D LQ+  + G+  IG+   +K   L +    +K  L+LG E +G+     + 
Sbjct: 1519 EVRPPQLVDYLQQKKAEGYTIIGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQ 1578

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +   G++++LNV  + A+ ++
Sbjct: 1579 LDVCVEIPQQGVVRSLNVHVSGALLIW 1605


>gi|330886610|gb|EGH20271.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 75

 Score = 42.0 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 17  IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 60


>gi|167949868|ref|ZP_02536942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 74

 Score = 42.0 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 35/56 (62%)

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +P+I+++NL+  L+ +   G   IG + +++  L Q      +A+++G+EGKGL P
Sbjct: 9   VPFIQVTNLSRTLKWLQQQGVWLIGTAGEAESELYQADLKGPLAIVMGSEGKGLAP 64


>gi|159479268|ref|XP_001697715.1| hypothetical protein CHLREDRAFT_105431 [Chlamydomonas reinhardtii]
 gi|158274083|gb|EDO99867.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 198

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 16/146 (10%)

Query: 141 VNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           V+  HNIG I+RSA AF    +  + +++++   S        G+  H+ +     L   
Sbjct: 8   VSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFGS-------HGSDAHVAFRHFDTLAKC 60

Query: 199 LQKMHSW-GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           +Q +    G + +G+   +   P+++       A +LG EG+G+  +         ++  
Sbjct: 61  VQHLKEVEGCRVLGVEICEGALPVQEHPFTGPTAFLLGNEGQGMTDRQMALCDGFVYIPQ 120

Query: 257 PGIIKA-LNVSNAAAVALYITQNHFA 281
            G   A LNV+ AA++ L+    HFA
Sbjct: 121 HGAGTASLNVAVAASIVLH----HFA 142


>gi|75761064|ref|ZP_00741063.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491448|gb|EAO54665.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 202

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 77/175 (44%), Gaps = 14/175 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+  ++ +        F+ G H V  AL   +  + +L+ +       DW  N 
Sbjct: 24  KQWKKLQTKKERDKKGL----FFVEGFHLVEEALK--AGIVTELIVSDQTDLPKDWTVND 77

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              + V    P+ I KI+ +    QG+    A       +        ++LD + DP N+
Sbjct: 78  VEMYIV----PEAIVKILRETETTQGVF---AVCEKHEKEVALTDGKFLLLDGLQDPGNL 130

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           G I+R+A A     ++  +      ++ + +S  G++  +P ++  NL + + K+
Sbjct: 131 GTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPIVK-GNLEEWVDKL 184


>gi|166154614|ref|YP_001654732.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|166155489|ref|YP_001653744.1| 23S rRNA methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335881|ref|ZP_07224125.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2tet1]
 gi|165930602|emb|CAP04099.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|165931477|emb|CAP07053.1| 23S rRNA methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 269

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++++    P NIGA+LR A     DG+I        Y+P+    + +S+ G +  +P  +
Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            S L + L  +H   +Q    +  ++     +       ++ G+E  GL P     +   
Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPTVVVFGSEKDGLSPDWLNGSFCN 234

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             L M G   +LN+S++ A   Y
Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257


>gi|332532503|ref|ZP_08408381.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038146|gb|EGI74593.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 243

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD V+DP N+G I+R A  +    I+T+   + S  A   K+ S  +     + +S
Sbjct: 102 LILALDGVSDPGNLGTIIRVADWYGIKHIVTS---TDSADAYNPKTISATMGSFVRVSVS 158

Query: 194 --NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +L D LQ ++       G   D +   + +     + L++G+E  G+R    +  T+ 
Sbjct: 159 QVDLPDYLQSLN---LPVYGAFLDGQSVHKTQFTGSGV-LLMGSESHGIRETCAKLVTNK 214

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             +   G  ++LNV+ A  + L
Sbjct: 215 ITIPAFGGAESLNVAMATGIIL 236


>gi|254562622|ref|YP_003069717.1| TRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
 gi|254269900|emb|CAX25878.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           DM4]
          Length = 269

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           N+G + R+A AF  D + +  +   P     +  SA  AL  +P+ R  +    L     
Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPFARAPSGAALLDLAER 191

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                + L+    + L++     +  L+LG EG GL P++         + M     +LN
Sbjct: 192 HALTPLALTPGGSETLDRLDPPARALLLLGTEGPGL-PESLMARARRVRIAMAPGFDSLN 250

Query: 265 VSNAAAVALY 274
           V+ A A+AL+
Sbjct: 251 VATAGAIALH 260


>gi|71405533|ref|XP_805376.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70868764|gb|EAN83525.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 559

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           ++VLD+V+DP  +G +LR+A  F  D IITT   +      + +SA GA
Sbjct: 221 ILVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARGA 269


>gi|260223702|emb|CAX28485.1| tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Phlomobacter
           fragariae]
          Length = 218

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 13/155 (8%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R+  L + L++++ P NI AI+R+A       I     +S + S  L+ +A+G+  H 
Sbjct: 14  AMRHPDLTVCLENLHKPRNISAIIRTADEVEIPQIHAI--WSKNSSKNLSTAAAGS-NH- 69

Query: 188 PYIRISN---LTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            ++R+ N   + + +    + G Q +   L++ +   LE +       +ILG E  G+  
Sbjct: 70  -WVRVKNHATIENTISTCKAAGMQILVTHLTNQAIDFLEIDYTQPN-CIILGQEQTGI-- 125

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             Q  A +  ++ M G++++LNVS A+A+ LY  Q
Sbjct: 126 SKQALALADHNIPMMGMVQSLNVSVASALILYEAQ 160


>gi|255348768|ref|ZP_05380775.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70]
 gi|255503308|ref|ZP_05381698.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70s]
 gi|255506987|ref|ZP_05382626.1| 23S rRNA methyltransferase [Chlamydia trachomatis D(s)2923]
 gi|289525445|emb|CBJ14922.1| 23S rRNA methyltransferase [Chlamydia trachomatis Sweden2]
 gi|296434997|gb|ADH17175.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/150]
 gi|296438717|gb|ADH20870.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/11023]
          Length = 269

 Score = 41.6 bits (96), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++++    P NIGA+LR A     DG+I        Y+P+    + +S+ G +  +P  +
Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            S L + L  +H   +Q    +  ++     +       ++ G+E  GL P     +   
Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPTVVVFGSEKDGLSPDWLNGSFCN 234

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             L M G   +LN+S++ A   Y
Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257


>gi|302852751|ref|XP_002957894.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
           nagariensis]
 gi|300256771|gb|EFJ41030.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
           nagariensis]
          Length = 701

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VLD V DP N+G++ RSA+AF  DG+          +    +S+ GAL  +P +   +
Sbjct: 439 LLVLDAVQDPGNLGSLARSALAFGWDGLFLLPGCCDPFNDKALRSSRGALLRLPTV-TGD 497

Query: 195 LTDALQKMHSWGF 207
           L + L+     G 
Sbjct: 498 LVELLEVAEEVGL 510


>gi|258648108|ref|ZP_05735577.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
 gi|260851979|gb|EEX71848.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 11/147 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +L + LD + DP N+G I+R A  F    I+ +   + + +  + ++  GAL  I  +
Sbjct: 98  TDELALALDGLQDPGNVGTIIRLADWFGIHNILCSPTTADAFAPKVVQATMGALGRI-NL 156

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +L +AL K+        G   D     EQ + + K  +I+G EG+G+ P  +   + 
Sbjct: 157 HYVDLCEALAKLPV-ETPIYGTFLDGPNIYEQSL-DTKGLIIMGNEGQGISPAVERFVSK 214

Query: 251 MAHLHMPGI------IKALNVSNAAAV 271
              L +P         ++LNV+ A A+
Sbjct: 215 --RLFIPRFPLNATGSESLNVAMATAI 239


>gi|332262651|ref|XP_003280373.1| PREDICTED: RNA methyltransferase-like protein 1 [Nomascus
           leucogenys]
          Length = 420

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRVPII 266


>gi|327262182|ref|XP_003215904.1| PREDICTED: probable methyltransferase TARBP1-like [Anolis
            carolinensis]
          Length = 1589

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 10/150 (6%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-----AVLAKSASGALE 185
            NS+L++V   ++ P N+G + R+   F    +I    +   +      +V A+     LE
Sbjct: 1430 NSKLIVVASLLDKPTNLGGLCRTCEIFGVSALIVGSIHYIHDKQFQYLSVSAEQWLSLLE 1489

Query: 186  HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKT 244
              P+     L D L++    G+  IG+   +K   L +    +K  L+LG E +G+    
Sbjct: 1490 VKPF----QLADYLEQKKIEGYTIIGVEQTAKSCDLTEYSFPEKSLLLLGNEHEGIPANL 1545

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   +   +   G+I++LNV  + A+ ++
Sbjct: 1546 IQQLDTCVEIPQQGVIRSLNVHVSGALLIW 1575


>gi|86739559|ref|YP_479959.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
 gi|86566421|gb|ABD10230.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
          Length = 316

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVN 142
           A+L    PV    P  +  I G E VH+G AL       P    D + +++ ++V + + 
Sbjct: 96  ADLGVDVPVYVAGPDVLAAITGFE-VHRG-ALAAMGRQPPRAAADLLVDARRVLVCEDIV 153

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
              N+GAI RSA     D ++ + R +        + + G +  +PY R+    +AL  +
Sbjct: 154 SHTNLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPEALGLL 213

Query: 203 HSWGFQTIGLS 213
              GF  + L+
Sbjct: 214 RDAGFTLLALT 224


>gi|325285564|ref|YP_004261354.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324321018|gb|ADY28483.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 241

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 18/238 (7%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q+ ++ ++ +   + G+ TV   L N   K + +  T NA+          + F  + + 
Sbjct: 14  QQKKYRTENKLFVVEGIKTVKE-LVNAKVKPYAIYTTSNAVLE-------DNAFKCELIS 65

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              + KI   +  +  LA+       P    +     L+ +D V DP N+G I+R    F
Sbjct: 66  ETDLKKISALKTPNNILAV----FYQPKTKEIIEDNWLVAVDDVRDPGNLGTIIRLCDWF 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +  +K+     +    ++  G+L  +  I   +L   L++ +       G   D K
Sbjct: 122 GVANLFCSKQTVDCYNPKTIQATMGSLARVN-IVYGDLEAFLKQTN---LPVYGAFMDGK 177

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVAL 273
              +++       L++G E  G+    +E  T    +   G    ++LNV+ A A+ L
Sbjct: 178 NVYKEDFTAQSGVLVMGNEANGVSKTVEELITKKISIPQFGNKTTESLNVATATAILL 235


>gi|242037305|ref|XP_002466047.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
 gi|241919901|gb|EER93045.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
          Length = 1767

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 114  LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPS 171
            LALE     + T+   R  +L++V   V+   N+  + R+   F   G++   +      
Sbjct: 1594 LALEARLHAAETIKQSRQ-ELIVVASLVDRIPNLAGLTRTCEVFRAAGLVVADKSVLQDK 1652

Query: 172  ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIA 230
            +  +++ +A   L  +  + + ++   L++    G+  IGL   +  +PL+  +  D+  
Sbjct: 1653 QFRLISVTAEKWLP-VTEVPVDSVKAYLERKRGEGYSVIGLEQTAHSRPLDGFVFPDRTV 1711

Query: 231  LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L+LG E +G+         +   +   G++++LNV  + A+A++
Sbjct: 1712 LVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVW 1755


>gi|328949341|ref|YP_004366678.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328449665|gb|AEB15381.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 270

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           + +  P NIG+I R+A A  C+ + I+     P++S  L +S  G +E + Y R S L +
Sbjct: 133 EDIRSPFNIGSIFRTAEAMGCENVFISPNCTDPNQSRAL-RSGMGCIETLGYKRCS-LEE 190

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHLHM 256
             Q    +  +T G       P+ +     +  +I+G+E  G+ P+  + A      + M
Sbjct: 191 LPQDKPVFVLETGG------TPITEFSFPKEGIVIIGSEELGVSPEALKRADYGRVSIPM 244

Query: 257 PGIIKALNVSNAAAVAL 273
            G+  +LNV  A  + +
Sbjct: 245 TGLKASLNVGVAFGILM 261


>gi|45658662|ref|YP_002748.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|294827733|ref|NP_710968.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45601906|gb|AAS71385.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293385576|gb|AAN47986.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
          Length = 274

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 87/190 (45%), Gaps = 18/190 (9%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIG 148
           VP +  +K+  ++    GL + TA      LD  +N        + ++V++ V  P N+G
Sbjct: 83  VPKKIFEKVSYRDR-PDGL-IATAFFFETGLDTFQNKSNIFKNLKPILVIEGVEKPGNLG 140

Query: 149 AILRSAVAFSCDGIITTK----RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            ILR+A       ++        ++P+    + ++++GAL  +  + +  +    + +  
Sbjct: 141 TILRTAEGAGFHTVLVADPKLDLFNPN----VIRASTGALFTLE-VYLGEIKLIYEILKK 195

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             ++T+ ++ ++ K         KIAL+ G+E  GL    +  +     L M G   +LN
Sbjct: 196 NQYRTLAVTPEATKHYYNADLKGKIALVFGSEQYGLSTYARNNSDEYVSLPMFGESDSLN 255

Query: 265 VSNAAAVALY 274
           ++ +A + +Y
Sbjct: 256 LAMSAGIVMY 265


>gi|115649674|ref|XP_782724.2| PREDICTED: similar to RNA methyltransferase like 1 variant
           [Strongylocentrotus purpuratus]
 gi|115931637|ref|XP_001192402.1| PREDICTED: similar to RNA methyltransferase like 1 variant
           [Strongylocentrotus purpuratus]
          Length = 449

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ D++ DP N+G ILRSA A +C  I+ TK         + +S +GA   +P I
Sbjct: 244 LICDNIRDPGNLGTILRSAAAAACQKILLTKGCVDVWEPKVLRSGAGAHFRVPII 298


>gi|251793410|ref|YP_003008138.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534805|gb|ACS98051.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 96  VPPQTIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           V  + + K+ G E  H G+ +   ++ P  L   LD   +   L++LD VN+  NIG IL
Sbjct: 171 VDSEELTKVSGTEH-HGGICMLVKKSHPFTLQGYLDVPHSEDCLVLLDGVNNAQNIGGIL 229

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           R+   F    IIT    S + S +  + A G  E   YIR+    D
Sbjct: 230 RTCAFFGVKHIITETPESLN-SPITLRVAEGGAE---YIRVLETAD 271


>gi|284035913|ref|YP_003385843.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
 gi|283815206|gb|ADB37044.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
          Length = 248

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 37/170 (21%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E  PLL+        +++ ++LD + DP N+G ILR A  +    I+ ++  +   +  +
Sbjct: 95  ENRPLLAGP------NEIALILDDIRDPGNLGTILRIADWYGVRKILCSETTADVYNPKV 148

Query: 177 AKSASGALEHIPYIR------ISNLTDAL-------QKMHSWGFQTIGLSSDSKKPLEQE 223
             ++ G+   + +        ++  T A+       + +HS GF   G            
Sbjct: 149 ISASKGSFTRVNWWYGDITRVLAQATSAVYGAFLDGEDVHSLGFDASGY----------- 197

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  L++G E  G+RP+     T    +   G  ++LNV  A AV L
Sbjct: 198 -------LVMGNESNGIRPEVGTFVTQRVTIPRYGDAESLNVGIATAVLL 240


>gi|237710454|ref|ZP_04540935.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455176|gb|EEO60897.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 258

 Score = 41.6 bits (96), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 19/165 (11%)

Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           A  + P+ D    V  S L + LD V DP N+G I+R A  F  + I  +   +   +  
Sbjct: 92  AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPK 151

Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             ++  GAL  +   Y  +  L ++L  +  +G      +  S   +  E  +    +++
Sbjct: 152 TVQATMGALARVKVHYCSLPQLIESLADIPVYG------TFLSGNIIYAESLSAHGLIVM 205

Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272
           G EGKG+ P+ ++       L++P         ++LNV+ A AV 
Sbjct: 206 GNEGKGVSPEVEKLINK--KLYIPNYPQERETSESLNVAIATAVV 248


>gi|261335662|emb|CBH18656.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
          Length = 1716

 Score = 41.6 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 103/255 (40%), Gaps = 28/255 (10%)

Query: 33   MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
            MQ F  ++    +P   F Y  HT S AL       F +  T+ A+A L  D ++     
Sbjct: 1473 MQHF--EASRVLEPLKEFPYIPHTKSTAL-------FCVDYTREAVAVLTADTHIS---- 1519

Query: 93   VKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  + +  + G E V +      + +    L P         ++++   + +P N+ 
Sbjct: 1520 ------EGMSSVTGYENVQRKATPWWSSQLYDELHPRALKTERQPVIVIASLLQNPVNVA 1573

Query: 149  AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDALQKMHSWG 206
             + R    F+ + ++ +          +A + S  L  +P+  +++  L+  L  +   G
Sbjct: 1574 GLFRCGEVFAVEKVVVSDAAVLEHPHFVAAARSSDL-WLPWSAVQVKALSGYLSSLRQDG 1632

Query: 207  FQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +  +G+   +   P+       +  ++LGAEG G+  +          +   G+I++LNV
Sbjct: 1633 YTLVGIEQTAGSVPMSSYQFPKRAVIVLGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNV 1692

Query: 266  SNAAAVALY-ITQNH 279
                ++ +Y  T+ H
Sbjct: 1693 HVTGSIVMYEYTRQH 1707


>gi|170051070|ref|XP_001861598.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167872475|gb|EDS35858.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1272

 Score = 41.6 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 4/175 (2%)

Query: 103  KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            KIV  +AV  G  L         L   +   L++V   V+   N+G + RS+  F     
Sbjct: 1086 KIVPLKAVEPGRELLGDLPERLRLRKAKEDGLIVVASLVDRAPNLGGLARSSEIFGVRQY 1145

Query: 163  I--TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKP 219
            +  + K     E   L+ +A   L ++  ++   L D L++M + G+  +G    +  +P
Sbjct: 1146 VVGSLKDVESKEFQALSMTAEKWL-NVAELKSFQLVDYLREMKAKGYAIVGAEQTTGSRP 1204

Query: 220  LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++Q     +  L+LG E +GL          +A +   G++++LNV    A+ ++
Sbjct: 1205 IQQIQFPARAVLVLGHEKEGLPAHIISQLDIVAEIPQFGVVRSLNVHVTGAIFMW 1259


>gi|157818915|ref|NP_001101752.1| hypothetical protein LOC360569 [Rattus norvegicus]
 gi|149053441|gb|EDM05258.1| similar to putative RNA methyltransferase (predicted) [Rattus
           norvegicus]
          Length = 418

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P +
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 266


>gi|71662893|ref|XP_818446.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883699|gb|EAN96595.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 559

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           ++VLD+V+DP  +G +LR+A  F  D IITT   +      + +SA GA
Sbjct: 221 ILVLDNVDDPGLLGTLLRAAAGFHYDAIITTNHCADIYDHRVVRSARGA 269


>gi|318040410|ref|ZP_07972366.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CB0101]
          Length = 261

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 112/279 (40%), Gaps = 39/279 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+ +++  +  L+  H  K RR        Q              L L G H +   
Sbjct: 1   MELITSRRNPLVGRLRALHQPKGRRE-------QGL------------LLLEGTHQLQEL 41

Query: 61  LNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKE---AVHQGL 114
           L     +  QLLAT   + R   L  D +LP    ++ V  + ++ +   +    V   L
Sbjct: 42  LRL-GLQPEQLLATPAWIERHGALLADQDLP----LQPVGEEVMEAVATTDHPDGVVATL 96

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A +  P+      A  +   ++ LD + DP N+G +LR+A+A   D +       P +  
Sbjct: 97  ARQALPV------ARGDGAFVLALDQLQDPGNLGTLLRTALAAGVDEVWLGGGADPLQPK 150

Query: 175 VLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIAL 231
           VL  SA  AL          S L   L++  + G Q    L     +P  Q        L
Sbjct: 151 VLRASAGAALALPLLRLSDRSELLPLLERAVAAGRQLAATLVQPGVQPYWQLDWTRPTVL 210

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           +LG EG GL P+    AT    +     +++LNV+ AAA
Sbjct: 211 LLGNEGAGLHPQLAALATHRITIPHSAAVESLNVAVAAA 249


>gi|91216324|ref|ZP_01253291.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
 gi|91185462|gb|EAS71838.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
          Length = 242

 Score = 41.6 bits (96), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 7/144 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + LD + DP N+G I+R    F    +I +       +  + ++  G+L  +  I  
Sbjct: 97  ELTLALDSIRDPGNLGTIIRMCDWFGVKQLICSLDTVDCFNPKVVQATMGSLTRVNVI-- 154

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
              TD    + S      G   D +   E  +K     ++LG E  G+  +      +  
Sbjct: 155 --FTDLESYLLSTSNFKYGAFMDGENIYETSLKTKNAIIVLGNEANGISSEINSQLDAKI 212

Query: 253 HLHMPGIIK---ALNVSNAAAVAL 273
            +   G+IK   +LNV+ A A+ L
Sbjct: 213 SIPRHGVIKSAESLNVAMAGAIML 236


>gi|322818883|gb|EFZ26166.1| hypothetical protein TCSYLVIO_7669 [Trypanosoma cruzi]
          Length = 559

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           ++VLD+V+DP  +G +LR+A  F  D IITT   +      + +SA GA
Sbjct: 221 VLVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARGA 269


>gi|302335827|ref|YP_003801034.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
 gi|301319667|gb|ADK68154.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
          Length = 277

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 15/185 (8%)

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + ++VG   V   LA    P      + +  +  + VL+ + D  N+GA+ RSA A   
Sbjct: 91  VMSEVVGFNVVRGYLAAARRPHPREAQEVLEGASRVAVLEGLTDVSNVGALFRSAAALGV 150

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHSWGFQTIGLSSDSK 217
           D ++     +   +    +++ G +  +P+              + + GF ++ L+ D  
Sbjct: 151 DALLLAPTCADPFNRRAIRTSMGTVFQLPWAPAPRPWPQATFDALRADGFTSVALALD-- 208

Query: 218 KPLEQEIKND--------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
              E  ++ D        ++AL  G+EG GL           A + M   + +LNV+ ++
Sbjct: 209 ---ECAVRLDDPALADSGRVALFFGSEGTGLSDDVLSAVDRSAIIPMSRGVDSLNVAASS 265

Query: 270 AVALY 274
           AVA +
Sbjct: 266 AVAFW 270


>gi|323358259|ref|YP_004224655.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323274630|dbj|BAJ74775.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 227

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 18/143 (12%)

Query: 146 NIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           NIG+I+RSA AF      II  +R++            GA+    Y  + +  D ++   
Sbjct: 96  NIGSIVRSANAFLAAEVHIIGKRRWN----------RRGAMVTDRYQHVRHHED-VETFT 144

Query: 204 SW----GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +W    G   I + + +   P+ +    +   L+ G EG GL P+    A+++  +   G
Sbjct: 145 AWARGSGLPVIAIDNVEGSVPVNRAELPEACVLLFGQEGPGLSPEALAAASAVVEITQYG 204

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             +++N ++AAAV +Y     +A
Sbjct: 205 STRSINAASAAAVVMYEWCRRWA 227


>gi|220925797|ref|YP_002501099.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219950404|gb|ACL60796.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 272

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 146 NIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           N+G + R+A AF  D +I       P     +  SA  AL  +P+ R+ +    L   H 
Sbjct: 133 NVGGLFRNAAAFGADAVILDAATCDPLYRKAIRVSAGTALT-MPFGRVPDGEALLALCHR 191

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   + L+   ++ +       +  L+LG EG GL P+     +    + M   + +LN
Sbjct: 192 HGLVPVALTPAGEEDIAALPPLPRALLLLGTEGTGL-PEALMARSRRVRIAMAPGVDSLN 250

Query: 265 VSNAAAVALY 274
           V+ A AVAL+
Sbjct: 251 VAAAGAVALH 260


>gi|295132801|ref|YP_003583477.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294980816|gb|ADF51281.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 215

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+G I+R    F    ++ +       +  + +S  G++  +  +   
Sbjct: 72  LTVALDGVRDPGNLGTIIRLCDWFGVKNLVCSTDTVDCFNPKVIQSTMGSITRVNVVY-K 130

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT---S 250
           NL++ LQ   S    + G   D +   ++ ++  K  L+LG E  G+ P+ +   +   S
Sbjct: 131 NLSEFLQ---SQDIVSYGTFMDGENVYQKRLQQ-KSVLVLGNEANGINPEIENLISEKIS 186

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
           +         ++LNV+ A A+ L
Sbjct: 187 IPQFGKSQETESLNVATATAIFL 209


>gi|239917947|ref|YP_002957505.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239839154|gb|ACS30951.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 298

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            ++L  VL  V DP N G ++R+A A   D ++ T       +  + +S +G+L H+P +
Sbjct: 141 EARLAAVLCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRSTAGSLFHLPVV 200

Query: 191 RISNLTDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                  A+    + G Q     G  +D    L   +     A + G E +GL       
Sbjct: 201 TAVPAEAAVAAARAAGLQVWAADGYGADRLDALAPGVVAAPTAWLFGNEAQGLDDGELAL 260

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + + G  ++LNV  AA V LY
Sbjct: 261 ADRRVAVPLYGAAESLNVGTAATVCLY 287


>gi|254420044|ref|ZP_05033768.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196186221|gb|EDX81197.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 272

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 8/163 (4%)

Query: 119 APL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           APL  L PT     ++   + L+ V DP N+G I+R+A A  C G+I         S   
Sbjct: 115 APLDSLDPT-----SAPCWVALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPYSVEA 169

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            ++  G++  +   R ++    L    +W    +G   D+       +      +++G E
Sbjct: 170 VRATMGSVFAVSITR-TDPEAFLAWRKTWPGSVVGTRLDATVSHRSAVMQKPSLILMGNE 228

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             GL  +          + M G   +LN++ A  + +Y   + 
Sbjct: 229 QAGLTDQLAAACDVNVKIPMRGRADSLNLAIATGIMVYAATDE 271


>gi|171742772|ref|ZP_02918579.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
           27678]
 gi|283456178|ref|YP_003360742.1| methylase [Bifidobacterium dentium Bd1]
 gi|306822630|ref|ZP_07456008.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309800805|ref|ZP_07694937.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278386|gb|EDT46047.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
           27678]
 gi|283102812|gb|ADB09918.1| rRNA methylase [Bifidobacterium dentium Bd1]
 gi|304554175|gb|EFM42084.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308222341|gb|EFO78621.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 290

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 126 LDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           LDA  N +      ++     V DP N G ++RSA A  C  ++         +  + +S
Sbjct: 116 LDAAGNVESFGDNAMVAAFWQVRDPGNAGTVIRSADAAGCAAVVFVDECVDIFNPKVIRS 175

Query: 180 ASGALEHIPYIRISNLTDAL------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---- 229
            +G+L H+P + +   T+A       + +  +     G  S   +PL   +         
Sbjct: 176 TAGSLFHLPVLTMG--TEAFFAWCDERNLAIYAADVYGTDSRPPEPLTDVLAEPSTLAGA 233

Query: 230 -ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +I G E +GL  +  +    +  + + G  ++LN+  +AAV L
Sbjct: 234 KTMIFGNEARGLTREVLDRTDRIVSIPIYGKAESLNLGTSAAVML 278


>gi|118100282|ref|XP_415864.2| PREDICTED: similar to RNA methyltransferase like 1 [Gallus gallus]
          Length = 407

 Score = 41.6 bits (96), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190
           ++++ D++ DP N+G ILRSA    C+ ++ TK    P E  VL ++  GA   +P +
Sbjct: 185 IVLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVL-RAGMGAHFRVPIV 241


>gi|325001131|ref|ZP_08122243.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia sp. P1]
          Length = 228

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 34/154 (22%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAK--------SASGALE 185
           + ++++   HNIG ++R+A AF   G  I+  +R++   + V  +         A+G + 
Sbjct: 81  VAIENLGHDHNIGTVVRTANAFGAGGVHIVGRRRWNRRGAMVTDRYLSLHHHPGAAGLVA 140

Query: 186 H-----IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           H     +  + + NL  A++                   LE+        L+ GAEG GL
Sbjct: 141 HARAAGLALVAVDNLPGAVR-------------------LEETALPRDCVLVFGAEGPGL 181

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            P+ +E A     +   G  +++N   AA + ++
Sbjct: 182 SPELREAADLAVSIAQFGSTRSINAGVAAGIVMH 215


>gi|297158833|gb|ADI08545.1| rRNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 258

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S  ++VLD+  +  N+GA++R A  F   G++TT    P     +    SGA  H     
Sbjct: 111 SAPVVVLDNPRNLGNVGAVVRLAAGFGVAGVVTTGDIDPWHPNAV---RSGAGLHFATAV 167

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
               +D L     +     G      + +   +  D   L  G+E  G+ P+ ++ AT +
Sbjct: 168 ERLTSDDLPPGPLYALDAEG------EDIRSVVIPDDALLAFGSERHGISPEVRKRATRL 221

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             L M   + + N++ + A+AL+
Sbjct: 222 VALPMRPQVSSYNLATSVAMALF 244


>gi|242089459|ref|XP_002440562.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
 gi|241945847|gb|EES18992.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 8/133 (6%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-H 203
           HN+G + RSA AF    ++   R   S     A  + GA  H+ +   ++L  A   +  
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFASLALARAYLKE 72

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK 261
             G    G+  ++  KP+     +   A + G EG GL  K  +      ++    G   
Sbjct: 73  ERGCDICGVEITEDAKPVTAHPFHRSTAFLFGNEGTGLSQKECDICDFFVYIPQYGGGTA 132

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AA++ L+
Sbjct: 133 SLNVTVAASIVLH 145


>gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 266

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 3/188 (1%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAIL 151
           V    P  + KI GK+   Q L       L+P     R+S  + +V   + DP N+G IL
Sbjct: 76  VIVTTPDILSKISGKDNA-QALVGVYRDRLTPLAALDRSSADIWIVAQSLRDPGNLGTIL 134

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+  A    G+I         S    +++ GAL     I  +   + L  +     Q IG
Sbjct: 135 RTGDAVGAGGLILIDDCVDPFSVESVRASMGAL-FTQSITQARWEEFLPWLRGGAGQLIG 193

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            S  + +  ++        L++G E +GL    +     +  + M G   +LN + A AV
Sbjct: 194 TSLKATQDYQEPAYQSPSFLLVGNEAQGLPADYEAQCDLLVKMPMRGKADSLNAAVATAV 253

Query: 272 ALYITQNH 279
             Y   N 
Sbjct: 254 MAYELLNQ 261


>gi|34762513|ref|ZP_00143511.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887846|gb|EAA24916.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 261

 Score = 41.2 bits (95), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192
           L++LD V+DP N+G I+R   A +   II TK    + +  + +++ G++ ++   Y+  
Sbjct: 113 LVILDDVSDPGNLGTIIRICDATNFKDIILTKSTVDAYNEKVIRASMGSILNVNLYYLEK 172

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251
           S + + L++ +   +  I    D       +IK  +K A+I G EG G+           
Sbjct: 173 SEIINFLKENN---YSIISTYLDKTAIPYNKIKLKEKNAIIFGNEGNGISDDFINITDYK 229

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + +    ++LNV+ A  + LY
Sbjct: 230 TIIPILSNTESLNVAVATGIILY 252


>gi|72391682|ref|XP_846135.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359056|gb|AAX79504.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802671|gb|AAZ12576.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 391

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 23/142 (16%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-------I 187
           ++ LDHV DP N+GAI+RSA       I+ +   S   +A + +S++G +E+       +
Sbjct: 177 VVFLDHVIDPANVGAIMRSAFFMGLRRIVLSSD-SAGCTAAVCRSSAGFMEYMSVYRAVV 235

Query: 188 PYIRISNLTDALQKMHSWG----------FQTIGLSSDSKKPLEQEI-----KNDKIALI 232
           P +     T A QK    G              G+++ S + L         K  +  L+
Sbjct: 236 PTLTFLENTVAQQKARDGGHLLEIYATSPMPRRGVTTCSARELPSVSCGPVNKPRRRLLL 295

Query: 233 LGAEGKGLRPKTQETATSMAHL 254
           LG EG GL  +     T  AH+
Sbjct: 296 LGNEGAGLPSEVMGLCTHTAHI 317


>gi|291405419|ref|XP_002718940.1| PREDICTED: RNA methyltransferase like 1 [Oryctolagus cuniculus]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G +LRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 206 LLLICDNLRDPGNLGTVLRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPVI 262


>gi|237741818|ref|ZP_04572299.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229429466|gb|EEO39678.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 258

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 6/143 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192
           L++LD V+DP N+G I+R   A +   II TK    + +  + ++  G++ ++   Y+  
Sbjct: 110 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 169

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251
           S + + L++ +   +  I    D       +IK  +K A+I G EG G+           
Sbjct: 170 SEIINFLKENN---YSIISTYLDKAAISYNKIKLKEKNAIIFGNEGNGISDDFINITNYK 226

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + +    ++LNV+ A  + LY
Sbjct: 227 TIIPILSNTESLNVAVATGIILY 249


>gi|256820355|ref|YP_003141634.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256581938|gb|ACU93073.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEH 186
           + R +   + ++ V   HN  A++R+   F      + + R+      + AK A GA + 
Sbjct: 26  SARTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGRFGKR---LDAKIAMGAQKW 82

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQ 245
           +   R ++    +  + + G+Q +  +         +   + K A   G E +GL  +  
Sbjct: 83  VDVFRYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSEQVL 142

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
             A +   + M G  ++LN+S A A+ L
Sbjct: 143 SQADTYLKIPMVGFTESLNISVAVAIVL 170


>gi|290968976|ref|ZP_06560511.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780932|gb|EFD93525.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
           str. 28L]
          Length = 270

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 17/189 (8%)

Query: 95  TVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAI 150
            V P+  DK+  KE  H QG+A    P  +  LD        + ++ L  V DP N+G+I
Sbjct: 79  VVAPKVYDKL--KETQHPQGIA-AVLPYFTTALDLTERIAPQRPIVYLQSVQDPGNLGSI 135

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQT 209
           +R+A A     ++ ++      +  + +SA GA+  IP +     TD  ++ + ++  +T
Sbjct: 136 IRTAAAADAGAVVLSRDSVDVYNDKVLRSAMGAVFKIPLV-----TDVDMETLQAYCLRT 190

Query: 210 ----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                G ++       Q        L  G EG GL     +       + M    ++LN+
Sbjct: 191 HRRLTGAAASGSSSYTQLDYAQARVLAFGNEGNGLALPFLQACAETVTIPMRPETESLNL 250

Query: 266 SNAAAVALY 274
           + A  + LY
Sbjct: 251 AAAVGIVLY 259


>gi|237804750|ref|YP_002888904.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273050|emb|CAX09963.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 269

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++++    P NIGA+LR A     DG+I        Y+P+    + +S+ G +  +P  +
Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            S L + L  +H   +Q       ++     +     + ++ G+E  GL P     +   
Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTIPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCN 234

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             L M G   +LN+S++ A   Y
Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257


>gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761703|ref|ZP_04759790.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374011|gb|EER63544.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 268

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + + +V   + DP N+G +LR+  A    G+I         S    ++  GAL     
Sbjct: 115 RQAPIWLVAQSLRDPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGAL-FTQK 173

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  +   D L  +       IG S  + +  ++        +++G E +GL    ++   
Sbjct: 174 IATARWEDFLVWLRQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACD 233

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  + M G   +LNV+ A A+  Y   N 
Sbjct: 234 HLVKIPMMGRADSLNVAVAGAIMAYEVLNQ 263


>gi|83816316|ref|YP_444648.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
 gi|83757710|gb|ABC45823.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 34/158 (21%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           ++VLD + DP N+G +LR+A  F    ++    T   Y P     + ++ +G+   +P  
Sbjct: 166 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPK----VMRAGAGSHWALPLA 221

Query: 191 RISNLTDALQKMHS-----WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           R       L ++       +G    G  +D+  P      +   AL+LG+E  GL     
Sbjct: 222 RTDAPGPFLDRLRRHGAALYGADLQGTRADAWGP------DRPSALVLGSEAHGL----- 270

Query: 246 ETATSMAHLH----MPG-----IIKALNVSNAAAVALY 274
            +A  +  L     +PG       ++LNV+ A  + LY
Sbjct: 271 -SAAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLY 307


>gi|62184854|ref|YP_219639.1| hypothetical protein CAB210 [Chlamydophila abortus S26/3]
 gi|62147921|emb|CAH63668.1| 4.2.3 [Chlamydophila abortus S26/3]
          Length = 265

 Score = 41.2 bits (95), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++++ V  P N+GAILR A     DG+I         +  + +S+ G +  +P I  +
Sbjct: 117 FYLIIEQVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLGTVFTLP-IWSA 175

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L    Q +    +     S  +      E  N  + L+ G+E  GL         S   
Sbjct: 176 TLDQVQQVILEEKWHAFVTSPRAHTMYFCENYNQPLVLVFGSEKDGLTASWLRGNFSKIS 235

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           L M G   +LN+S A +   Y
Sbjct: 236 LPMLGQADSLNLSTAVSAVAY 256


>gi|225707400|gb|ACO09546.1| Hypothetical tRNA/rRNA methyltransferase slr1673 [Osmerus mordax]
          Length = 454

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           L ++ D+V DP N+G ILR A A  C  ++ TK    +    + +SA GA   +P
Sbjct: 231 LSLICDNVRDPGNLGTILRCAAAAGCQDVLLTKGCVDAWEPKVLRSAMGAHFRLP 285


>gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 268

 Score = 41.2 bits (95), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + + +V   + DP N+G +LR+  A    G+I         S    ++  GAL     
Sbjct: 115 RQAPIWLVAQSLRDPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGAL-FTQK 173

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I  +   D L  +       IG S  + +  ++        +++G E +GL    ++   
Sbjct: 174 IATARWEDFLVWLRQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACD 233

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  + M G   +LNV+ A A+  Y   N 
Sbjct: 234 HLVKIPMMGRADSLNVAVAGAIMAYEVLNQ 263


>gi|302383631|ref|YP_003819454.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194259|gb|ADL01831.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 265

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 1/144 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++   + L+ V DP N+G I+R+A A  C G+I         S    ++  G++  +  +
Sbjct: 117 SASCWIALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPFSVEAVRATMGSVFAVAIV 176

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R + +   L    +W    +G   D+     +        +++G E  GL          
Sbjct: 177 RCT-VEAFLAWRTAWPGSVVGTRLDATVSYREAAYAGPTLILMGNEQAGLTDGLAAACDV 235

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M G   +LN++ A  +  Y
Sbjct: 236 NVKIPMRGRADSLNLAIATGIMAY 259


>gi|298368797|ref|ZP_06980115.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282800|gb|EFI24287.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 262

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 15/158 (9%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA--FSC--DGIITTKRYSPSESAVLAKS 179
           P  DA   +   +VLD + DP N+G ++RSA A    C   GI +   +SP     + ++
Sbjct: 103 PAQDAWPVNGDCVVLDRIQDPGNVGTVMRSAAAAGVGCLVVGIGSADVWSPK----VLRA 158

Query: 180 ASGA---LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           A GA   L+    +R++    + +    W      L   +   L     +   A I G E
Sbjct: 159 AMGAHFLLKIHTEVRLAQWISSYRD-KVWA---TALHHQNNHNLYNLDLHQSAAWIFGNE 214

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G G+     +  +    + M G  ++LNV+ AA V L+
Sbjct: 215 GSGVDDNILDQVSGCVRIPMAGKTESLNVAMAATVCLF 252


>gi|29346221|ref|NP_809724.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298385600|ref|ZP_06995158.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
 gi|29338116|gb|AAO75918.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298261741|gb|EFI04607.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
          Length = 252

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 23/172 (13%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--- 167
            Q LA+   P  + + D  R S L + LD + DP N+G I+R A  F  + II ++    
Sbjct: 81  QQVLAVFEQPQYTLSPDFARQS-LCLALDDIQDPGNLGTIIRLADWFGIEHIICSQNTVD 139

Query: 168 -YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIK 225
            Y+P       K+    +  I  +++ + T   + +HS G   + G   D +   EQ + 
Sbjct: 140 VYNP-------KTIQATMGGIARVKV-HYTSLPEFIHSLGDAPVFGTFLDGENMYEQPLS 191

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAV 271
            + + +++G EG G+  + +  A     L++P         ++LNV+ A AV
Sbjct: 192 TNGL-IVMGNEGNGIGKEVE--ALINRKLYIPNYPQGKETSESLNVAIATAV 240


>gi|212693396|ref|ZP_03301524.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
 gi|212664040|gb|EEB24614.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
          Length = 251

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 27/169 (15%)

Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPS 171
           A  + P+ D    V  S L + LD V DP N+G I+R A  F  + I     T   Y+P 
Sbjct: 85  AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTVDVYNPK 144

Query: 172 ESAVLAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                 ++  GAL  +   Y  +  L ++L  +  +G      +  S   +  E  +   
Sbjct: 145 T----VQATMGALARVKVHYCSLPQLIESLADIPVYG------TFLSGNIIYAESLSAHG 194

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272
            +++G EGKG+ P+ ++       L++P         ++LNV+ A AV 
Sbjct: 195 LIVMGNEGKGVSPEVEKLINK--KLYIPNYPQERETSESLNVAIATAVV 241


>gi|264679352|ref|YP_003279259.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
 gi|262209865|gb|ACY33963.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
          Length = 274

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V D  N+G+ILRSA AF    I+  K  +   S  + ++  GA   +  +  +++
Sbjct: 129 VVLDRVQDAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHFGLHLVEAASV 188

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D +Q +       +  SS     + +       A  +G EG+G+     E A     + 
Sbjct: 189 -DEVQGLQ---VPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMARHRISIA 244

Query: 256 MPGIIKALNVSNAAAVALY 274
            PG  ++LNV+ AAA+ L+
Sbjct: 245 QPGGEESLNVAAAAAICLH 263


>gi|30047088|gb|AAH50614.1| RNA methyltransferase like 1 [Homo sapiens]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPII 266


>gi|15079419|gb|AAH11550.1| RNA methyltransferase like 1 [Homo sapiens]
 gi|312153368|gb|ADQ33196.1| RNA methyltransferase like 1 [synthetic construct]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPII 266


>gi|8922534|ref|NP_060616.1| RNA methyltransferase-like protein 1 [Homo sapiens]
 gi|74734265|sp|Q9HC36|RMTL1_HUMAN RecName: Full=RNA methyltransferase-like protein 1
 gi|19749337|gb|AAG17988.2|AF177344_1 unknown [Homo sapiens]
 gi|7022703|dbj|BAA91694.1| unnamed protein product [Homo sapiens]
 gi|119611048|gb|EAW90642.1| RNA methyltransferase like 1 [Homo sapiens]
 gi|307686131|dbj|BAJ20996.1| RNA methyltransferase like 1 [synthetic construct]
          Length = 420

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPII 266


>gi|316978725|gb|EFV61669.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis]
          Length = 186

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 25/158 (15%)

Query: 124 PTLDAV---RNSQLL---MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           PT + +   +NS +L   ++ D + DP N+G+++RS  A  C  I+            + 
Sbjct: 36  PTYEEISKSKNSHILPLTVICDGLKDPGNVGSLIRSLAAMGCRRILAVTGCCYFWEVKVL 95

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +SASGA  +IP          + +  SW      L  D         ++ +I L++G+E 
Sbjct: 96  RSASGAHFYIP----------VYEDISWNRMLDYLPHDF-------FRDTEIVLVVGSER 138

Query: 238 KGLRPKTQETATSMA--HLHMPGIIKALNVSNAAAVAL 273
            GL  +        A   LH+P       +++A A  L
Sbjct: 139 TGLSEQALRFGEQHAGKRLHIPMTNDKFCLNSAVAATL 176


>gi|312216567|emb|CBX96517.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1292

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 23/174 (13%)

Query: 123  SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            SP     R + +++V   +++P N+G + R + +F  + +        +     A S + 
Sbjct: 1110 SPFTKYRRPASVILVASLIDNPTNLGGLSRISESFGLEALYIDDLKKTAHKDFKATSVTS 1169

Query: 183  ALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-------------- 226
              +H P   ++IS++   L +    G+  +G+    +  +  E ++              
Sbjct: 1170 E-KHFPIHALKISDVPQFLIETKRKGYVVVGVEQTDRSGILGEGEDVDAHGGAASTRWGK 1228

Query: 227  ------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   K  ++LG+E  G+ P+          +   G+ ++LNV  A  +ALY
Sbjct: 1229 SIGTLPKKCVVVLGSEKGGITPEVLTVIDRCVEIKTVGVTRSLNVQTAGGIALY 1282


>gi|320532915|ref|ZP_08033679.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134872|gb|EFW27056.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 10/150 (6%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALE 185
           A R  +L + +++V+   NIG+I+RSA AF+  G  II  +R++   + V  +     + 
Sbjct: 82  AARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRRRWNKRGAMVTNRYLD--VR 139

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           H P        + L    + G++ IG+ +    +PLE     ++  ++ G+EG+G+  + 
Sbjct: 140 HHP-----EPGELLAWARAEGYEVIGIDNGPGAQPLETADLPERCLMVFGSEGEGISAEL 194

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
               + +  +   G  +++NV+ AAAVA++
Sbjct: 195 SAGCSRLLRIGQYGSTRSINVAAAAAVAMH 224


>gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 178

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/144 (19%), Positives = 72/144 (50%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD++   +N+G++ R++ AF  + I      +      + K+A GA + + +  + 
Sbjct: 26  IIIVLDNIRSLNNVGSVFRTSDAFLVEKIYLCGITATPPHRDIQKTALGATDAVTWEYVE 85

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATS 250
           +    ++K+   G     +  ++    L++ +    +K A++ G E KG++ +    + +
Sbjct: 86  DSIALVRKLKEDGVHVCAIEQAEGAVMLDKFVPTTGEKYAVVFGNEVKGVQQEIVSLSNT 145

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G   +LN+S +A V ++
Sbjct: 146 VIEIPQVGTKHSLNISVSAGVVIW 169


>gi|294506400|ref|YP_003570458.1| RNA methyltransferase [Salinibacter ruber M8]
 gi|294342728|emb|CBH23506.1| Putative RNA methyltransferase [Salinibacter ruber M8]
          Length = 262

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 34/158 (21%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYI 190
           ++VLD + DP N+G +LR+A  F    ++    T   Y P     + ++ +G+   +P  
Sbjct: 116 VLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPK----VMRAGAGSHWALPLA 171

Query: 191 RISNLTDALQKMHS-----WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           R       L ++       +G    G  +D+  P      +   AL+LG+E  GL     
Sbjct: 172 RTDAPGPFLDRLRRHGAALYGADLQGTRADAWGP------DRPSALVLGSEAHGL----- 220

Query: 246 ETATSMAHLH----MPG-----IIKALNVSNAAAVALY 274
            +A  +  L     +PG       ++LNV+ A  + LY
Sbjct: 221 -SAAVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLY 257


>gi|228472059|ref|ZP_04056827.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276671|gb|EEK15384.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 178

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD++   +NIG++ R+A AF    I      +      + K+A GA E + +  + 
Sbjct: 25  VIVVLDNIRSLNNIGSVFRTADAFCIQKIYLCGITATPPHKEIHKTALGATESVEWEYVQ 84

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
           ++T  ++ +     + I +   +    LE     K    ALI G E +G++         
Sbjct: 85  DITTLVESLRQRQVEVIAIEQVEDAVSLEHFSPKKGVTYALIFGNEVEGVQQSVVSLCQR 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LN++ +A + L+
Sbjct: 145 AIEIPQYGTKHSLNIAVSAGILLW 168


>gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
           'sapolanicus']
 gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
           'sapolanicus']
          Length = 267

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           +++LD + DP N+G ++R+A A   + +I  K      +  + +++ G +  IP + ++S
Sbjct: 118 ILLLDRIQDPGNMGTMIRTAAAAGFEAVIALKGSVDIYNQKVIRASMGGIFAIPIWQKVS 177

Query: 194 -NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N      K  +  F+ +     ++K   +     K+ L++G E  GL       A    
Sbjct: 178 KNEFKKDLKDRAADFELLAADIKAEKYHFEHQYQQKLILMIGNEANGLAEDLLNIADMKV 237

Query: 253 HLHMPGIIKALNVSNAAAV 271
            + + G +++LN + AAAV
Sbjct: 238 KIPLKGEMESLNAAIAAAV 256


>gi|21222245|ref|NP_628024.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|5102788|emb|CAB45203.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
          Length = 261

 Score = 41.2 bits (95), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD   +  N GA++R A  F   G++TT    P    V+   A         +  + 
Sbjct: 119 VVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 170

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           + + L+           L  + +     E+ +D + L  G+E  GL P+ +  A  +  L
Sbjct: 171 VVERLEVAGLPPGPLFALDPEGEDIRGLELPDDAL-LAFGSERSGLTPELRARADRLVAL 229

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M   + + N++ + A+ LY
Sbjct: 230 PMRPQVSSYNLATSVAMTLY 249


>gi|303279152|ref|XP_003058869.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460029|gb|EEH57324.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 119

 Score = 40.8 bits (94), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 9/113 (7%)

Query: 170 PSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           PS      ++A G +  IP  R+      + TDA          T   + D+K   E+  
Sbjct: 10  PSARGQALRAARGGVFRIPIARLGWDELVDFTDARGLARYCADATAANAVDAK---EESE 66

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               + L+LGAEG+GL  +       +  + MPG +++LNV  A  + +Y+ +
Sbjct: 67  DGRGVCLVLGAEGRGLSAEALGGCQPV-KVPMPGEMESLNVGIAGGILMYVMR 118


>gi|318057501|ref|ZP_07976224.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080806|ref|ZP_07988138.1| rRNA methylase [Streptomyces sp. SA3_actF]
          Length = 266

 Score = 40.8 bits (94), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 10/152 (6%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +P     R S LL VLD   +  N GA++R A  F   G++TT        AV+ ++ +G
Sbjct: 116 APGFAGPRTSPLL-VLDEPRNLGNAGAVIRLAAGFGASGVVTTGDLDLWHPAVV-RAGAG 173

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
                P  R +     L     W F   G   D +      + +D + L  G+E  GL  
Sbjct: 174 LHFATPVARRA--VPELPAGPLWAFDAEG--EDLRG---VRVPDDAL-LAFGSERHGLTA 225

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +E A  +  L M   + + N++ +  +ALY
Sbjct: 226 AVRERADRLVALPMRPHVSSYNLATSVGMALY 257


>gi|255311209|ref|ZP_05353779.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276]
 gi|255317511|ref|ZP_05358757.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276s]
          Length = 269

 Score = 40.8 bits (94), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++++    P NIGA+LR A     DG I        Y+P+    + +S+ G +  +P  +
Sbjct: 120 LIVEQAEKPGNIGALLRIADGAGVDGAILCDPVVDLYNPN----VIRSSLGTVFTMPVWQ 175

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            S L + L  +H   +Q    +  ++     +     + ++ G+E  GL P     +   
Sbjct: 176 AS-LKEVLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCN 234

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             L M G   +LN+S++ A   Y
Sbjct: 235 IALPMLGKADSLNLSSSVAAVAY 257


>gi|154507934|ref|ZP_02043576.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797568|gb|EDN79988.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
           17982]
          Length = 243

 Score = 40.8 bits (94), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 12/157 (7%)

Query: 125 TLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           T+DA+R           + +++++   NIG+I+R+A A     +    R   +    +  
Sbjct: 80  TMDAIRADIAARSLPFEVAVENLDHDFNIGSIVRTANAMGARRVHVVGRKRWNRRGAMVT 139

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEG 237
                ++H P +R   L +   K    G   +G+ + +    LE  +  ++  L+ G+E 
Sbjct: 140 DRYLPVDHRPEVR--ELVEHCSKE---GLTLVGVDNVEGSVALEGAVLPERACLVFGSEA 194

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL  +      S+  +   G  +++NV +AAA+ ++
Sbjct: 195 SGLSEEMIRACDSVVAITQRGSTRSMNVGHAAAIVMW 231


>gi|218676911|ref|YP_002395730.1| rRNA methylase [Vibrio splendidus LGP32]
 gi|218325179|emb|CAV27085.1| rRNA methylase [Vibrio splendidus LGP32]
          Length = 244

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 16/207 (7%)

Query: 72  LATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           L  KN  A  D+   N    F    V     D       V    A+    +  PT +  +
Sbjct: 41  LVVKNVFATADFLSENHASLFEFDCVEASLDDLTKASTLVSNNAAIAVVEI--PTFELPK 98

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186
            + L++ LD V+DP N+G I+R A  +    I+ +      Y+P       K+ S  +  
Sbjct: 99  ATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNP-------KTISATMGS 151

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              + +S  TD  + +        G   + +   + E   + I L++G+E  G+R    +
Sbjct: 152 FGRVHVSQ-TDLPEYLEQANLPVYGAFLEGESVHKTEFTANGI-LLMGSESHGIREHAAK 209

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
             T    +   G  ++LNV+ A  + L
Sbjct: 210 FVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|256786656|ref|ZP_05525087.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289770551|ref|ZP_06529929.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289700750|gb|EFD68179.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 261

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 9/140 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD   +  N GA++R A  F   G++TT    P    V+   A         +  + 
Sbjct: 119 VVVLDQPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 170

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           + + L+           L  + +     E+ +D + L  G+E  GL P+ +  A  +  L
Sbjct: 171 VVERLEVAGLPPGPLFALDPEGEDIRGLELPDDAL-LAFGSERSGLTPELRARADRLVAL 229

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M   + + N++ + A+ LY
Sbjct: 230 PMRPQVSSYNLATSVAMTLY 249


>gi|237726961|ref|ZP_04557442.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229433817|gb|EEO43894.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 226

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 19/165 (11%)

Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           A  + P+ D    V  S L + LD V DP N+G I+R A  F  + I  +   +   +  
Sbjct: 60  AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPK 119

Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             ++  GAL  +   Y  +  L ++L  +  +G      +  S   +  E  +    +++
Sbjct: 120 TVQATMGALARVKVHYCSLPQLIESLADIPVYG------TFLSGNIIYAESLSAHGLIVM 173

Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272
           G EGKG+ P+ ++       L++P         ++LNV+ A AV 
Sbjct: 174 GNEGKGVSPEVEKLINK--KLYIPNYPQERETSESLNVAIATAVV 216


>gi|328875258|gb|EGG23623.1| TAR RNA loop binding protein [Dictyostelium fasciculatum]
          Length = 1627

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 126  LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            +D      +++V   V+   N+  I R+   F+ + ++ + R    E  +  + +  A  
Sbjct: 1474 MDQRSRQSIIIVATFVDKIPNLAGIARTGEIFNIESLVVSNRRIMKE-VMFQQISVSAER 1532

Query: 186  HIPYIRIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRP 242
             +P   +S  NLTD L    S G+  +G+   S      E +  +K  L+LG E +G+  
Sbjct: 1533 WLPIEEVSEENLTDYLMSKKSEGYSLLGIEQTSTSNCITEFQFPNKCVLLLGKEKEGIPT 1592

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +          +   G++++LNV  + ++ +
Sbjct: 1593 EYINLLDKCIEIPQLGVLRSLNVHVSGSIMI 1623


>gi|298208939|ref|YP_003717118.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
 gi|83848866|gb|EAP86735.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
          Length = 238

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   +  + V   HN  A++RS   F    +   +  +  +  +  + A GA + +  
Sbjct: 42  RTNHFTVATEDVYQLHNTSAVIRSCDVFGVQNVHIIEEQNAKK--IDREIAMGAQKWVTI 99

Query: 190 IRISNLTDALQKMHSWGFQTIGLS----------SDSKKPLEQEIKNDKIALILGAEGKG 239
            R  ++ D+++ +   G+Q +  S           D  KP          A+  G E  G
Sbjct: 100 NRYHSVQDSIKSLKEKGYQIVATSPHIESHNLRDFDVTKPS---------AIFFGTEKDG 150

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L  +    A S   + M G  ++LN+S +AA+ L
Sbjct: 151 LSEEVLNQADSYIKIPMVGFTESLNISVSAAIIL 184


>gi|150005579|ref|YP_001300323.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
           8482]
 gi|149934003|gb|ABR40701.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
           8482]
          Length = 251

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 19/165 (11%)

Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           A  + P+ D    V  S L + LD V DP N+G I+R A  F  + I  +   +   +  
Sbjct: 85  AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPK 144

Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             ++  GAL  +   Y  +  L ++L  +  +G    G        +  E  +    +++
Sbjct: 145 TVQATMGALARVKVHYCSLPQLIESLTDIPVYGTFLNG------NIIYTESLSAHGLIVM 198

Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272
           G EGKG+ P+ ++       L++P         ++LNV+ A AV 
Sbjct: 199 GNEGKGVSPEVEKLINK--KLYIPNYPQERETSESLNVAIATAVV 241


>gi|333030523|ref|ZP_08458584.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
 gi|332741120|gb|EGJ71602.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
          Length = 252

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 17/170 (10%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            Q +AL   P       A+++S L + LD V DP N+G I+R A  F  + I  ++    
Sbjct: 82  QQVIALFEQPQYEIDNKAMQHS-LCLALDGVQDPGNLGTIIRLADWFGIEHIYCSQDTVD 140

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQEIKNDK 228
             +    ++  G L  +  I  ++LT+ +++  +       L  ++   K LEQ     K
Sbjct: 141 IYNTKTIQATMGGLARVK-IHYTSLTEIIKQNPNIPIYGTFLDGENIYDKQLEQ-----K 194

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGI------IKALNVSNAAAVA 272
             +I+G EGKG+  + QE  +    L++P         ++LNV+ A A+ 
Sbjct: 195 GLIIMGNEGKGISDELQELVSH--KLYIPNYPMNKESAESLNVAIATAIV 242


>gi|332520835|ref|ZP_08397295.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043365|gb|EGI79561.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 220

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     +  + V   HN  A++RS   F    +   +  +     +  + A GA + +  
Sbjct: 29  RTKHFTVATEDVYQLHNTSAVIRSCDVFGIQEVNIVEEVNAKR--IDREIAMGAQKWVDL 86

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETA 248
            R   + DA+Q +   G+Q +  +  +     ++     K     G E +GL  +  + A
Sbjct: 87  NRYHTVKDAIQDVKQKGYQVVATTPHANDCNLRDFDVTKKSCFFFGRETEGLSQEVLDEA 146

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G  ++LN+S +AA+ L
Sbjct: 147 DVFLKIPMVGFTESLNISVSAAIIL 171


>gi|5281018|emb|CAB45991.1| OBP33pep like protein [Arabidopsis thaliana]
 gi|7268299|emb|CAB78594.1| OBP33pep like protein [Arabidopsis thaliana]
          Length = 278

 Score = 40.8 bits (94), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 14/150 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ ++   HN+G + RSA AF    +I   R   +     A  + G+  HI +    +L
Sbjct: 8   VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFN-----AFGSHGSASHIRFRHFHSL 62

Query: 196 TDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +A   L++        + ++  +    E   K +  A +LG EG GL  K  E      
Sbjct: 63  IEARNYLKEEKDCDICGVEIADGASAVNEHPFKRN-TAFLLGNEGSGLSAKEYEICDFFV 121

Query: 253 HLHMPGIIKA-LNVSNAAAVALYITQNHFA 281
           ++   G   A LNV+ AA++ L+    HF 
Sbjct: 122 YIPQYGCGTASLNVTVAASIVLH----HFG 147


>gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 271

 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +L++LD V DP N G ILR+A+A     +  T+      +  + +S  GA+  +  +   
Sbjct: 122 MLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIVTHC 181

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              + L+   S          +     E       +AL++G EG G     Q        
Sbjct: 182 QPEEILKVCRSHKIPVFVGDVEGTDLYETHFAQ-PMALVVGNEGNGPSAAFQGPGVKRIT 240

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M   +++LNV+ A  + LY
Sbjct: 241 IPMSHQVESLNVAMATGIILY 261


>gi|192359547|ref|YP_001983124.1| rRNA methylase [Cellvibrio japonicus Ueda107]
 gi|190685712|gb|ACE83390.1| rRNA methylase [Cellvibrio japonicus Ueda107]
          Length = 240

 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 26/158 (16%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAV---AFSCDGIITTKRYSPSESAVLAKSASGAL 184
           A+ + +  + L  + DP N+G ILR+      F C  +++     P    V+ +S+ GA+
Sbjct: 94  ALVDGERAIYLHEIQDPGNLGTILRTLAWFGGFRC--LLSPGSVDPYNPKVV-RSSMGAI 150

Query: 185 EHIPY---IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEG 237
            H+P    + +++L +   ++       +             ++ND  A     + G E 
Sbjct: 151 FHVPLELDVSLAHLAERFARIACLDMDGVA------------VRNDAFAGHRCYVFGNEA 198

Query: 238 KGL-RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G+ R + Q     M ++   G I++LN++ A  + +Y
Sbjct: 199 RGVPREQLQNFDLHMFNIPGSGAIESLNLATAVNICVY 236


>gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304]
 gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 226

 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 12/144 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I R A  +    +   K     ES   A +A   LE+   + + +L + LQ+M+
Sbjct: 8   PENVGFIARVAKNYGIKRLCLYKCRVTEESYHTAANAKDVLENA--VVVEDLQEFLQRMN 65

Query: 204 SWGFQTIGLSSDSKKPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                T G+     K L +E         +   ++A++ G E  GL  +  E    +  +
Sbjct: 66  LI-VGTTGIPGGDYKYLRKELLAPEDLPSVAKGRVAVLFGREDYGLYNEELEMCHVLVRV 124

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
                   +NVS+AAAV LY  + 
Sbjct: 125 PTSEEYPVMNVSHAAAVILYFLRE 148


>gi|86145741|ref|ZP_01064070.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|85836440|gb|EAQ54569.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
          Length = 244

 Score = 40.8 bits (94), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 16/207 (7%)

Query: 72  LATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           L  KN  A  D+   N    F    V     D       V    A+    +  PT +  +
Sbjct: 41  LVVKNVFATADFLSENHASLFEFDCVEASLDDLTKASTLVSNNAAIAVVEI--PTFELPK 98

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186
            + L++ LD V+DP N+G I+R A  +    I+ +      Y+P       K+ S  +  
Sbjct: 99  ATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNP-------KTISATMGS 151

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              + +S  TD  + +        G   + +   + E   + I L++G+E  G+R    +
Sbjct: 152 FGRVHVSQ-TDLPEYLEQANLPVYGAFLEGESVHKTEFTANGI-LLMGSESHGIREHAAK 209

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
             T    +   G  ++LNV+ A  + L
Sbjct: 210 FVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|297184407|gb|ADI20523.1| predicted rRNA methylase (spou class) [uncultured alpha
           proteobacterium EB080_L58F04]
          Length = 154

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPY 189
           N ++ +VL     PHN GAI R+ VA + + I I    +S SE  V+ ++ +   +H+  
Sbjct: 2   NEKMKIVLVAPEIPHNTGAIGRTCVALNLELILIKPYGFSLSEKTVI-RAGTRYWKHVRL 60

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +    L+                ++     +  D   L+ G E  GL P       
Sbjct: 61  CEYEDWQSFLEDRQPAQDDLYLFEEHGQQSFYAPVYKDDGYLVFGCESTGL-PSEVMLGR 119

Query: 250 SMAHLHMP---GIIKALNVSNAAAVALY 274
                H+P    ++K+LN+SN A   +Y
Sbjct: 120 EDRIFHVPMRNPVVKSLNLSNVATAVIY 147


>gi|13472801|ref|NP_104368.1| rRNA methylase [Mesorhizobium loti MAFF303099]
 gi|14023548|dbj|BAB50154.1| rRNA methylase [Mesorhizobium loti MAFF303099]
          Length = 274

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 10/149 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  + + LD V DP N+G ++R+  A    G+I     +   S    ++  G++  +P  
Sbjct: 115 NGDVWVALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVA 174

Query: 191 RISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQ 245
           + +      +   +W  GF  +   +  K  ++    +     + L++G E +GL     
Sbjct: 175 KATT-----EAFLAWRGGFSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLA 229

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +  +   G   +LN++ A  + L+
Sbjct: 230 ASCDRLLRIPQAGRADSLNLAVATGIMLF 258


>gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           155-74]
          Length = 206

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ V+ PHN+ AI+R+A A     +     +  +    +A +A+G+   +       + D
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEVHAV--WPGNRMRTMASAAAGSNSWVQVKTHRTIGD 58

Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           A+  +   G Q +    SD+     +        +++G E  G+  +    A     + M
Sbjct: 59  AVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPM 118

Query: 257 PGIIKALNVSNAAAVALYITQ 277
            G++++LNVS A+A+ LY  Q
Sbjct: 119 IGMVQSLNVSVASALILYEAQ 139


>gi|227505888|ref|ZP_03935937.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940]
 gi|227197516|gb|EEI77564.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940]
          Length = 229

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R   L + +++  +  NIG ++R+A AF+ D + I  +R      A++       + H  
Sbjct: 76  RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLMHH-- 133

Query: 189 YIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               + + + L+     G   + + ++    PLE     ++  L+ G EG G+  + Q+ 
Sbjct: 134 ----ATVAELLEWASDKGLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDA 189

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     +   G  +++N   AA +A++
Sbjct: 190 AMMTCSIAQFGSTRSINAGVAAGIAMH 216


>gi|297565069|ref|YP_003684041.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
 gi|296849518|gb|ADH62533.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
          Length = 274

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 24/162 (14%)

Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT---TKRYSP-----SESA 174
           TL+  R S   L++V   +  P N+GA+LRSA A   + ++       YSP     S   
Sbjct: 106 TLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEVVLVAGGVDLYSPQVIRNSTGV 165

Query: 175 V--LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           V  L   A+   E + +I+  NL       H+   + +   ++ + P         +A+ 
Sbjct: 166 VFSLRTLAASESEVLDWIKQHNLPLVATTPHA---EALYWEANLRPP---------VAIA 213

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G E +GLR    E A +   + M G   +LNVS +AA+ LY
Sbjct: 214 VGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLY 255


>gi|210623621|ref|ZP_03293947.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
 gi|210153491|gb|EEA84497.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
          Length = 264

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 7/147 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG---ALEHI 187
           + + ++VLD + DP N+G I+R+A A   D IIT K      +  + +S  G   ++  I
Sbjct: 115 DDKYIIVLDRIQDPGNMGTIIRTADAAGADAIITLKGCVDIYNPKVIRSTMGSIFSMNII 174

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  R     + L  + S G + +    +++   +     +K+AL++G E  G+     E 
Sbjct: 175 PAER----DEMLSTLKSKGIKIVSSWLNTENWYDTVDYGNKVALVIGNEANGIDDVIAEN 230

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  + + G  ++LN + ++A+ +Y
Sbjct: 231 SDLLVKIPIYGSAESLNAAISSAILMY 257


>gi|317507290|ref|ZP_07965033.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254419|gb|EFV13746.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 220

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R     +V++++    NIG I+R+A AF  + + I  +R      A++         H  
Sbjct: 66  RRHPFHVVIENLAHDANIGTIVRTANAFLAEAVHIVGRRRWNRRGAMVTDRYQHVHHHAT 125

Query: 189 YIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               ++           G   I + ++   +P+E      + AL+ G EG GL P+ + T
Sbjct: 126 AQAFADYAAGR------GLAVIAVDNTPGAEPMETFALPRRCALLFGQEGTGLSPELRGT 179

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A S   +   G  +++NV  AA +A++
Sbjct: 180 AQSALAIAQFGSTRSINVGVAAGIAMH 206


>gi|163852857|ref|YP_001640900.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|163664462|gb|ABY31829.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
          Length = 269

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           N+G + R+A AF  D + +  +   P     +  SA  AL  +P+ R  +    L     
Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPFARAPSGAALLDLAER 191

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                + L+    + L+      +  L+LG EG GL P++         + M     +LN
Sbjct: 192 HALTPLALTPGGSETLDALEPPARALLLLGTEGPGL-PESLMARARRVRIAMAPGFDSLN 250

Query: 265 VSNAAAVALYITQNHFAK 282
           V+ A A+AL+    H A+
Sbjct: 251 VATAGAIALH----HLAR 264


>gi|326772449|ref|ZP_08231733.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
 gi|326637081|gb|EGE37983.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
          Length = 218

 Score = 40.8 bits (94), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 10/150 (6%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALE 185
           A R  +L + +++V+   NIG+I+RSA AF+  G  II  +R++   + V  +     + 
Sbjct: 64  AARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRRRWNKRGAMVTNRYLD--VR 121

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           H P        + L    + G++ IG+ +    +PLE     ++  ++ G+EG+G+  + 
Sbjct: 122 HHP-----EPGELLAWARAEGYEVIGIDNGPGAQPLEAADLPERCLMVFGSEGEGISLEL 176

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
               + +  +   G  +++NV+ AAAVA++
Sbjct: 177 SAGCSRLLRIGQYGSTRSINVAAAAAVAMH 206


>gi|15234624|ref|NP_193287.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|26449903|dbj|BAC42073.1| OBP33pep like protein [Arabidopsis thaliana]
 gi|28827336|gb|AAO50512.1| putative OBP33pep protein [Arabidopsis thaliana]
 gi|332658215|gb|AEE83615.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 222

 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 10/143 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ ++   HN+G + RSA AF    +I   R   +     A  + G+  HI +    +L
Sbjct: 8   VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFN-----AFGSHGSASHIRFRHFHSL 62

Query: 196 TDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +A   L++        + ++  +    E   K +  A +LG EG GL  K  E      
Sbjct: 63  IEARNYLKEEKDCDICGVEIADGASAVNEHPFKRN-TAFLLGNEGSGLSAKEYEICDFFV 121

Query: 253 HLHMPGIIKA-LNVSNAAAVALY 274
           ++   G   A LNV+ AA++ L+
Sbjct: 122 YIPQYGCGTASLNVTVAASIVLH 144


>gi|255535419|ref|YP_003095790.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
           3519-10]
 gi|255341615|gb|ACU07728.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
           3519-10]
          Length = 242

 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + DP N+G I+R A  F    II ++      +  + +++ G+     ++R++  
Sbjct: 100 LILDGIQDPGNLGTIIRLADWFGIGQIICSEDTVDIYNPKVIQASMGS-----FLRVNVF 154

Query: 196 -TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             D  + +      TIG   + +     +   ++  L+ G EG G+RP+     T    +
Sbjct: 155 YADIKEYLTDSPIATIGTDMEGENLYNFKFP-ERFNLVFGNEGNGIRPEIDNLLTDKITI 213

Query: 255 HMPGIIK---ALNVSNAAAVAL 273
              G  K   +LNVS A  + L
Sbjct: 214 PRFGKSKSTESLNVSMATGIIL 235


>gi|312195570|ref|YP_004015631.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
 gi|311226906|gb|ADP79761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 19/157 (12%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRS-------AVAFSCDGIITTKRYSPSESAVLAKSAS 181
           VR S L+ V    NDP N G ++R+       AV F+ DG+       P     + +S++
Sbjct: 138 VRPS-LVAVCVAANDPGNAGTVIRTADAAGADAVVFAGDGV------DPFGGKCV-RSSA 189

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEG 237
           G+L H+P +   +L  A+  + + G + +  S    + L +     ++      + G E 
Sbjct: 190 GSLFHLPVVMEPDLGVAVDWLRANGCRVVATSGHGARDLYEAADAGELDGPTGWLFGNEA 249

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL P     A ++  + + G  ++LN++ A A+ LY
Sbjct: 250 HGLSPDALAAADAVLRVPVYGQAESLNLAVATALCLY 286


>gi|240140185|ref|YP_002964662.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           AM1]
 gi|240010159|gb|ACS41385.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           AM1]
          Length = 269

 Score = 40.8 bits (94), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 3/130 (2%)

Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           N+G + R+A AF  D + +  +   P     +  SA  AL  +P+ R  +    L     
Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPFARAPSGAALLDLAER 191

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                + L+    + L+      +  L+LG EG GL P++         + M     +LN
Sbjct: 192 HALTPLALTPGGSETLDALEPPARALLLLGTEGPGL-PESLMARARRVRIAMAPGFDSLN 250

Query: 265 VSNAAAVALY 274
           V+ A A+AL+
Sbjct: 251 VATAGAIALH 260


>gi|23013325|ref|ZP_00053233.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 103

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEG 237
           + G LE +  IR      +L+++     + +G +  S KP+ + +      IAL+LG E 
Sbjct: 1   SEGGLEWVEVIRAQKFVASLKRLRD-SHRIVGTALGSGKPVAEVLNRPGKPIALLLGNEE 59

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL P T      +  L   G +++LNV+  AA+ ++
Sbjct: 60  DGLPPATLAACDDIVTLPGSGRVQSLNVAATAAILIH 96


>gi|313668290|ref|YP_004048574.1| RNA methyltransferase [Neisseria lactamica ST-640]
 gi|313005752|emb|CBN87206.1| putative RNA methyltransferase [Neisseria lactamica 020-06]
          Length = 261

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 1/139 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP N+G +LRSA A     ++  K  + + S  + ++  GA         ++L
Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADL 174

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L +     F T  L  + +  L  E   +  A + G EG G+     + A     + 
Sbjct: 175 EIWLARYEDRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIP 233

Query: 256 MPGIIKALNVSNAAAVALY 274
           M    ++LNV+ AA + L+
Sbjct: 234 MHDATESLNVAMAATICLF 252


>gi|261879397|ref|ZP_06005824.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
 gi|270333965|gb|EFA44751.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
          Length = 273

 Score = 40.8 bits (94), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL + LD V DP N+G I+R A  F  + +  ++  + + +  + ++  G++  +    I
Sbjct: 124 QLCLALDGVQDPGNLGTIIRIADWFGIEHVYCSEDTADAYNPKVVQATMGSIARVKVHSI 183

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL   +  +   G    G   D +    QE+  + + +++G EGKG+  + ++  T   
Sbjct: 184 -NLPQFITHLPE-GVPIYGTLLDGQNIYTQELSANGL-IVMGNEGKGISEEIRKLVTH-- 238

Query: 253 HLHMPGI------IKALNVSNAAAV 271
            L +P         ++LNV+ A AV
Sbjct: 239 KLFIPSFPPDTDTAESLNVAIATAV 263


>gi|163755356|ref|ZP_02162476.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
 gi|161324776|gb|EDP96105.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
          Length = 218

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 7/147 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R     + ++ V   HN  A+LRS   F    + +   R        +A  A   ++   
Sbjct: 28  RTRHFTVAVEDVYQMHNTSAVLRSCDVFGIQDVHVIEARLGKKMDREIAMGAQKWVDIHR 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           Y       D L+K    G++ I  +   DS+   + +I   K A   G E +GL  +   
Sbjct: 88  YNDTQQCIDTLKKQ---GYRIIATTPHEDSQYLHDFDI-TQKAAFFFGKEKEGLSEEVLS 143

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
            A     + M G  ++LN+S +AA+ +
Sbjct: 144 QADEFLKIPMVGFTESLNISVSAAITI 170


>gi|319781460|ref|YP_004140936.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167348|gb|ADV10886.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 285

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 10/149 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  + + LD V DP N+G ++R+  A    G+I     +   S    ++  G++  +P  
Sbjct: 126 NGDVWVALDRVRDPGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVA 185

Query: 191 RISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQ 245
           + +      +   +W  GF  +   +  K  ++    +     + L++G E +GL     
Sbjct: 186 KATT-----EAFLAWRGGFSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLA 240

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +  +   G   +LN++ A  + L+
Sbjct: 241 ASCDRLLRIPQAGRADSLNLAVATGIMLF 269


>gi|89890886|ref|ZP_01202395.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
           bacterium BBFL7]
 gi|89517031|gb|EAS19689.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
           bacterium BBFL7]
          Length = 271

 Score = 40.4 bits (93), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--R 191
           L+++ +    P N+GAILR+A A   D +I     +   +  + +S+ G +  +P     
Sbjct: 123 LILIAESPEKPGNLGAILRTADAAKVDAVIIANPVADLFNPNVVRSSVGCVFTVPTATGT 182

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            S + D L+  +   +     SS+    ++        A+ LG E  GL  + ++ A   
Sbjct: 183 TSEVVDFLKSKNINLYAATLQSSERYDTMDY---TSGSAIALGTEATGLTQEMRDAAMQN 239

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + M G I ++N+S +AA+ ++
Sbjct: 240 IIIPMSGTIDSMNLSVSAAILIF 262


>gi|114799577|ref|YP_759058.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114739751|gb|ABI77876.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 269

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L  +++  N+GA  R+A AF  D ++              + +SGA   +P+ +    
Sbjct: 124 LILSELSNHDNVGACFRNAAAFGADAVLLDAASCDPLYRKAIRVSSGAALWLPFSQGGTG 183

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGL 240
            D +    + G +   L+  S   PL      +++AL++GAEG GL
Sbjct: 184 ADLIAAAEAAGHEVWALTPRSDAAPLPSLKVPERVALLMGAEGPGL 229


>gi|150024430|ref|YP_001295256.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149770971|emb|CAL42438.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 242

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 16/157 (10%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P    + NS L++ LD + DP N+G I+R    F    I+ +++    Y+P    V A  
Sbjct: 88  PQEKQIENSGLIVALDDIRDPGNLGTIIRLCDWFGIAQIVCSEQTVDVYNP--KVVQATM 145

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S    +I Y+   +L   L +  +  F   G   D K   + ++    I ++LG E  G
Sbjct: 146 GSITRVNITYL---DLETYLAEAKTAVF---GTFMDGKDIYKTQLPPSGI-IVLGNEANG 198

Query: 240 LRPKTQETATSMAHLHMPGIIK---ALNVSNAAAVAL 273
           +    +E  T    +   G ++   +LNV+ A A+ L
Sbjct: 199 ISKIIEEKVTQKITIPRFGDLQRTESLNVATATAIVL 235


>gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
 gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
          Length = 220

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 17/156 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------ITTKRYSPSESAVLAKSASG 182
           R   L ++ + V+ PHN+ AI+R+     CD +       I T    P+ S V   S   
Sbjct: 18  RQPDLTILTEDVHKPHNLSAIIRT-----CDAVGILDVHCINTTDEFPTFSQVSQGSDKW 72

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLR 241
              H       N+   +  +    F         +    +EI   +  A++LGAE  G+ 
Sbjct: 73  VFLH----SHPNIKTGINHLKRQNFNIYAAHFTDQSLDYREIDYTQPTAILLGAEKWGVS 128

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +          + M G++++LNVS AAAV L+  Q
Sbjct: 129 EEAANLVDGHIIVPMLGMVQSLNVSVAAAVILFEAQ 164


>gi|328352676|emb|CCA39074.1| hypothetical protein PP7435_Chr3-0102 [Pichia pastoris CBS 7435]
          Length = 1457

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + S L+++   V+ P N+G I R +      G++T       E       A  A + +P 
Sbjct: 1303 KRSDLIVMASLVDKPPNLGGICRLSDVLGA-GLLTLDDMRVKEHIQFKNVAVTADKWMPL 1361

Query: 190  --IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQ 245
              ++  N+   + +    G+  IGL  +D    L  E+K  K +LI LG E +G+     
Sbjct: 1362 EEVKKENIIGFMLRKKKQGYTLIGLEQTDDSVELNSELKFPKKSLIVLGMEKEGIPSSIL 1421

Query: 246  ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    +   G+I+++N+  A AV ++
Sbjct: 1422 AELDFCVEIKQVGVIRSMNIQTATAVIVH 1450


>gi|320538050|ref|ZP_08037952.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421]
 gi|320145105|gb|EFW36819.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421]
          Length = 268

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 8/138 (5%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++++  P N+G+I R+A AF  + I  ++     +     +SA G +E +P+    +L +
Sbjct: 125 VENIRAPFNLGSIFRTAEAFGAEKIFLSEDCVSPQQPRAIRSAMGTIELVPW-EHCDLEN 183

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLHM 256
             + +  +  +T G    S +  E+ I      +++G+E  GL P+    AT+    + M
Sbjct: 184 LPKDLPVFALETGGTPIHSFRFPEKGI------VMIGSEELGLSPQALRRATAGTVSIPM 237

Query: 257 PGIIKALNVSNAAAVALY 274
            G   ++NV  A  + ++
Sbjct: 238 YGSKASINVGVAFGILMH 255


>gi|265756534|ref|ZP_06090740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233722|gb|EEZ19337.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 16/152 (10%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V  S L + LD V DP N+G I+R A  F  + I  +   +   +    ++  GAL  + 
Sbjct: 98  VIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGALARVK 157

Query: 189 --YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             Y  +  L ++L  +  +G      +  S   +  E  +    +++G EGKG+ P+ ++
Sbjct: 158 VHYCSLPQLIESLADIPVYG------TFLSGNIIYAESLSAHGLIVMGNEGKGVSPEVEK 211

Query: 247 TATSMAHLHMPG------IIKALNVSNAAAVA 272
                  L++P         ++LNV+ A AV 
Sbjct: 212 LINK--KLYIPNYPQERETSESLNVAIATAVV 241


>gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 291

 Score = 40.4 bits (93), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 10/151 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V    +++ LD V DP N+G +LR+A A    G++         S    ++  G++  +P
Sbjct: 137 VSGRNVIVALDRVRDPGNLGTVLRTADAAGATGVVLIGETVDPFSLETVRATMGSIFAVP 196

Query: 189 YIRISNLTDALQKMHSW--GFQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPK 243
             + S       +   W  GF  +   +  +  +   E         L++G E  GL P 
Sbjct: 197 LAKASE-----AEFLEWRKGFSGLVAGTHMEGAVDYREPRYGAQPTILLMGNEQAGLTPS 251

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +  +   G   +LN++ A  V L+
Sbjct: 252 LARICDVLVRIPQSGRADSLNLAVATGVMLF 282


>gi|297804698|ref|XP_002870233.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316069|gb|EFH46492.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 222

 Score = 40.4 bits (93), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 10/143 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ ++   HN+G + RSA AF    +I   R   +     A  + G+  HI +    +L
Sbjct: 8   VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFN-----AFGSHGSASHIRFRHFHSL 62

Query: 196 TDA---LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +A   L++        + ++  +    E   K +  A +LG EG GL  K  E      
Sbjct: 63  IEARTYLKEEKDCDICGVEIADGASAVNEHPFKRNT-AFLLGNEGSGLSAKEYEICDFFV 121

Query: 253 HLHMPGIIKA-LNVSNAAAVALY 274
           ++   G   A LNV+ AA++ L+
Sbjct: 122 YIPQYGCGTASLNVTVAASIVLH 144


>gi|311740469|ref|ZP_07714297.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304515|gb|EFQ80590.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 237

 Score = 40.4 bits (93), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSA 180
           ++  +D  R+S  + + +  ND  NIG ++R+A AF+ D + I  +R      A++    
Sbjct: 77  ITEDIDKRRHSLHIAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRY 135

Query: 181 SGALEHIPYIRISNLTDALQKMHSW----GFQTIGL-SSDSKKPLEQEIKNDKIALILGA 235
              + H          ++++K+ +W    G   + + ++    PLE     ++  L+ G 
Sbjct: 136 QHLMHH----------ESVEKLIAWAAEEGLTVVAIDNTPGCVPLETAELPERSLLLFGQ 185

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           EG G+    Q+ A     +   G  +++N   AA +A++
Sbjct: 186 EGPGVTQAAQDAAVMTCSIAQFGSTRSINAGVAAGIAMH 224


>gi|261329707|emb|CBH12689.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 391

 Score = 40.4 bits (93), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 29/145 (20%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-------I 187
           ++ LDHV DP N+GAI+RSA       I+ +   S   +A + +S++G +E+       +
Sbjct: 177 VVFLDHVIDPANVGAIMRSAFFMGLRRIVLSSD-SAGCTAAVCRSSAGFMEYMSVYRAVV 235

Query: 188 PYIRISNLTDALQK---------------MHSWGFQTIG---LSSDSKKPLEQEIKNDKI 229
           P +     T A QK               M   G  T     L S S  P+    K  + 
Sbjct: 236 PTLTFLENTVAQQKARDDGHLLEIYATSPMPRRGVTTCSARELPSVSCGPVN---KPRRR 292

Query: 230 ALILGAEGKGLRPKTQETATSMAHL 254
            L+LG EG GL  +     T  AH+
Sbjct: 293 LLLLGNEGAGLPSEVMGLCTHTAHI 317


>gi|295133953|ref|YP_003584629.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294981968|gb|ADF52433.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 6/155 (3%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L+   +D  R + + +    V   HN  A++RS   F    I   +   P    +  + A
Sbjct: 21  LIKKVIDQ-RTNHITVATQDVYQLHNTSAVIRSCDVFGIQNIHVIEEKFPKR--IDREIA 77

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGK 238
            GA + +   R ++  + +  +   G+Q +  S   DS    + +I   K AL  G E  
Sbjct: 78  MGAQKWVSVNRHASAKECISHVREMGYQIVATSPHDDSLHLGDFDITK-KSALFFGTERY 136

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           GL  +  + A     + M G  ++LN+S +AA+ L
Sbjct: 137 GLSQEIIDEADCTLKIPMYGFTESLNISVSAAIIL 171


>gi|294778614|ref|ZP_06744036.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294447563|gb|EFG16141.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 19/165 (11%)

Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           A  + P+ D    V  S L + LD V DP N+G I+R A  F  + I  +   +   +  
Sbjct: 85  AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPK 144

Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             ++  GAL  +   Y  +  L ++L  +  +G    G        +  E  +    +++
Sbjct: 145 TVQATMGALARVKVHYCSLPQLIESLTDIPVYGTFLNG------NIIYAESLSAHGLIVM 198

Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272
           G EGKG+ P+ +        L++P         ++LNV+ A AV 
Sbjct: 199 GNEGKGVSPEVERLINK--KLYIPNYPQERETSESLNVAIATAVV 241


>gi|254303889|ref|ZP_04971247.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324081|gb|EDK89331.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 256

 Score = 40.4 bits (93), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 6/143 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192
           L++LD V+DP N+G I+R   A +   II TK    + +  + ++  G++ ++   Y+  
Sbjct: 108 LIILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 167

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251
           S + + L++ +   +  I    D       +IK  +K A+I G EG G+           
Sbjct: 168 SEIINFLKENN---YSIISTYLDKTAIPYNKIKLKEKNAVIFGNEGNGISDDFINITDYK 224

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + +    ++LNV+ A  + LY
Sbjct: 225 TIIPILSNTESLNVAVATGIILY 247


>gi|254884507|ref|ZP_05257217.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640801|ref|ZP_07995514.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|254837300|gb|EET17609.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387613|gb|EFV68479.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 251

 Score = 40.4 bits (93), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 19/165 (11%)

Query: 119 APLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           A  + P+ D    V  S L + LD V DP N+G I+R A  F  + I  +   +   +  
Sbjct: 85  AVFVQPSYDLNPEVIKSSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSTGTADVYNPK 144

Query: 176 LAKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             ++  GAL  +   Y  +  L ++L  +  +G    G        +  E  +    +++
Sbjct: 145 TVQATMGALARVKVHYCSLPQLIESLTDIPVYGTFLNG------NIIYAESLSAHGLIVM 198

Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAVA 272
           G EGKG+ P+ +        L++P         ++LNV+ A AV 
Sbjct: 199 GNEGKGVSPEVERLINK--KLYIPNYPQERETSESLNVAIATAVV 241


>gi|291451390|ref|ZP_06590780.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291354339|gb|EFE81241.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 286

 Score = 40.4 bits (93), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++ D    P NIG+I+RSA AF   G+I +   +        ++ +G+L  +P +R+ 
Sbjct: 128 LGVLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVP 187

Query: 194 NLTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQE 246
           +  + +   ++  + G   + +++D K   + ++ +      + L++G E  GL    +E
Sbjct: 188 SPAEVMAWVERRRAAGLPLVLVATDEKG--DADVYDFDFTQPVLLLVGNETSGLAGAWRE 245

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                  + M G   +LN +NAA   LY
Sbjct: 246 VCDVTVSIPMAGAASSLNAANAATAVLY 273


>gi|221052955|ref|XP_002257852.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193807684|emb|CAQ38388.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 320

 Score = 40.4 bits (93), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 103/272 (37%), Gaps = 74/272 (27%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---------TKNALARLDWDANLPHPFPVKTVPPQT 100
           ++YGV++VS+ L    R I  +L          T+    +  +D       P++T   + 
Sbjct: 79  YVYGVNSVSSVLVKNERTIHSVLVNEHIRLNKKTRKQAYQYIFDTIKKRNIPIRTTSKKK 138

Query: 101 IDKIVGKEAVHQGLALETA--------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +D +VG    H  + +ET           L       + S + + L  ++ P     +L 
Sbjct: 139 MDDLVGGFP-HNDIIMETTYRTMKKAKHFLKDYPQKEKRSNIYICLHDIDTP-----VLH 192

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           S+V                          G  E + +  ++N+   +  + S GF+ +  
Sbjct: 193 SSV--------------------------GTSEFLDFFHVNNMLTFMDDLKSCGFKILST 226

Query: 213 SSDSKKPLE----QEI------KNDKIALILGAEGKGLRPKTQETATSMAHLH------- 255
                  +     QE+      KN+KI +ILG E KGL  +  E +    +++       
Sbjct: 227 CCHPNDSIPNDRLQELANVQMNKNEKIFIILGNETKGLSKEILEKSDICIYINGHRTEVA 286

Query: 256 -MPGI-------IKALNVSNAAAVALYITQNH 279
             P +       + +LNV+NA A+ L+   +H
Sbjct: 287 PTPDLNHNGEFTLDSLNVNNACAILLHHFTSH 318


>gi|269214336|ref|ZP_06158510.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
 gi|269210033|gb|EEZ76488.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
          Length = 178

 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 1/151 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P   A+ +    +VLD V DP N+G +LRSA A     ++  K  + + S  + ++  GA
Sbjct: 20  PDAGALPDKGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGA 79

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    ++L   L +     F T  L  + +  L  E   +  A + G EG G+   
Sbjct: 80  HFLSEIYPQADLEIWLARYEDRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKA 138

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + A     + M    ++LNV+ AA + L+
Sbjct: 139 VLDRADKCVRIPMHDATESLNVAMAATICLF 169


>gi|166197675|ref|NP_899086.2| RNA methyltransferase-like protein 1 [Mus musculus]
 gi|81889274|sp|Q5ND52|RMTL1_MOUSE RecName: Full=RNA methyltransferase-like protein 1
 gi|56800171|emb|CAI35103.1| RNA methyltransferase like 1 [Mus musculus]
 gi|148680911|gb|EDL12858.1| RNA methyltransferase like 1 [Mus musculus]
          Length = 418

 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           L+++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P +
Sbjct: 210 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 266


>gi|307109015|gb|EFN57254.1| hypothetical protein CHLNCDRAFT_21737 [Chlorella variabilis]
          Length = 201

 Score = 40.4 bits (93), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 3/149 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   +L +++ + D  N+ A+ RSA A     +   +           +SA+GA + +
Sbjct: 43  AARTFNVLPIVESIYDMGNLAAVCRSADALGFGALHVIRNTRDERYKQSTRSAAGADKWL 102

Query: 188 PYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                ++  + +      G+Q +   LS D+   + Q       A I+G E +G+  +  
Sbjct: 103 DVQVFNSTEECVLNAKRLGYQVVATHLSPDAVD-ISQIDWTRPTAFIMGNEKRGVSCEAV 161

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A + A + M G + + N+S AAA+ +Y
Sbjct: 162 ALADACAVVPMVGFVDSYNLSVAAALIMY 190


>gi|91784104|ref|YP_559310.1| putative RNA methylase [Burkholderia xenovorans LB400]
 gi|91688058|gb|ABE31258.1| Putative RNA methylase [Burkholderia xenovorans LB400]
          Length = 275

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 15/255 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +  +  L G H  SA L+   +     + T  AL   +  
Sbjct: 21  RDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEM-CIVTDGALRHDEAQ 79

Query: 85  ANLP--HPFPVKTVPPQTIDKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLD 139
           A +       + T+P    D + G+    VH  G+ L    L +P  D V  +Q  +VLD
Sbjct: 80  AIVSRIEDHRLVTLP----DALFGQLSNVVHGVGILLLVEKLATPLPDEV--AQTCLVLD 133

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V D  N+G+ILRSA A     +      + + S+ + +S  GA  H   ++I    +A 
Sbjct: 134 GVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVEAQ 190

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +       +   S   + +     +  +A + G EG G+    ++  +    +  PG 
Sbjct: 191 ALIERLAVPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQIWRDAVSLRVTIPQPGG 250

Query: 260 IKALNVSNAAAVALY 274
           +++LNV+ AAAV ++
Sbjct: 251 MESLNVAAAAAVCVF 265


>gi|83590588|ref|YP_430597.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
           39073]
 gi|83573502|gb|ABC20054.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
           39073]
          Length = 272

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T+PL SP         L ++   + DP N+G I R+A+     G+I T+      +  + 
Sbjct: 115 TSPLHSP--------PLFIIAAGIQDPGNLGTIWRTALGAGATGLILTRGCVDPYNPKVV 166

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +SA GA   +P           +K+   G + +     +   L Q      +ALI+G+E 
Sbjct: 167 RSAMGATFRLPVAGGVEPALLARKLQDAGLKLVVADVGAPLTLWQVDLRPPLALIVGSEN 226

Query: 238 KGLRPKTQETATSMAHLHMPG 258
            G  P+    AT    + + G
Sbjct: 227 HGPGPELLAAATERVGIPLVG 247


>gi|255325551|ref|ZP_05366651.1| spou rrna methylase family protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297339|gb|EET76656.1| spou rrna methylase family protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 17/155 (10%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGAL 184
           +D  R+S  + + +  ND  NIG ++R+A AF+ D + I  +R      A++       +
Sbjct: 76  IDKRRHSLHIAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLM 134

Query: 185 EHIPYIRISNLTDALQKMHSW----GFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKG 239
            H          ++++K+ +W    G   + + ++    PLE     ++  L+ G EG G
Sbjct: 135 HH----------ESVEKLIAWAAEEGLTVVAIDNTPGCVPLETAELPERSLLLFGQEGPG 184

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    Q+ A     +   G  +++N   AA +A++
Sbjct: 185 VTQAAQDAAVMTCSIAQFGSTRSINAGVAAGIAMH 219


>gi|109112660|ref|XP_001085109.1| PREDICTED: RNA methyltransferase like 1 isoform 2 [Macaca mulatta]
          Length = 420

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190
           L ++ D++ DP N+G ILRSA    C  ++ TK    P E  VL ++  GA   +P I
Sbjct: 210 LSLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVL-RAGMGAHFQVPII 266


>gi|74190703|dbj|BAE28150.1| unnamed protein product [Mus musculus]
          Length = 418

 Score = 40.4 bits (93), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           L+++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P +
Sbjct: 210 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 266


>gi|300869138|ref|ZP_07113736.1| Heat shock protein DnaJ-like protein (modular protein)
           [Oscillatoria sp. PCC 6506]
 gi|300332865|emb|CBN58934.1| Heat shock protein DnaJ-like protein (modular protein)
           [Oscillatoria sp. PCC 6506]
          Length = 517

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A+ TAP     + +V  + L + L+ V DP N+G I+R+A A   DG+  +      +  
Sbjct: 93  AIATAP--RSEMQSVATASLGLALETVQDPGNLGTIIRTAAAAGADGLWLSGDSVDLDHP 150

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWG-----------FQTIGLSSDS 216
            + +S++GA   +P     +L   + +    G           F  +GLS D+
Sbjct: 151 KVLRSSAGAWFRLPMAVTYDLKAEISRCQHQGMQNFRNFTRCKFDLLGLSRDA 203


>gi|256819298|ref|YP_003140577.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256580881|gb|ACU92016.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 243

 Score = 40.4 bits (93), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIR 191
           +++ LD+V DP N+G ++R    F  + +I   +     +  + ++  G+L  +   Y+ 
Sbjct: 98  VILALDNVQDPGNLGTLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYVD 157

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++        + +       +  D +     E   D + LILG E  G+ P+ +  A  +
Sbjct: 158 LAGF------LATCALPLYAMDLDGENLYTTEFPEDCV-LILGNEANGISPEVRALADGI 210

Query: 252 AHLHMPGIIK---ALNVSNAAAVAL 273
             +   G ++   +LNV+ A A+ +
Sbjct: 211 ITIPRFGKLQQTESLNVAMAGAIVV 235


>gi|326800579|ref|YP_004318398.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
 gi|326551343|gb|ADZ79728.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
          Length = 176

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 124 PTLDAVRNSQLL---MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           P++D  +    L   +VLD V   HN+G++ R++  F+ + I+            + K+A
Sbjct: 7   PSVDEFKQLDKLPVTVVLDSVRSLHNVGSVFRTSDGFAVERILLCGITGTPPHRDIEKTA 66

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEG 237
            GA + + +    N+ +A+  +   G + I +       +      +  +  ALI G E 
Sbjct: 67  LGATQSVAWQYEKNIEEAIINLKQEGKKIIAIEQAEGSTMLHRFTPVLGESYALIFGNEV 126

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+  +  +       +   G   + NV  +A + L+
Sbjct: 127 NGVSEEAMKLIDYCVEIPQFGTKHSFNVVISAGIVLW 163


>gi|326388507|ref|ZP_08210101.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206972|gb|EGD57795.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 279

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 93  VKTVPPQTIDKIVGKE--AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           V  VP   + K+ GK+      G+  E    LS T+D  + + + +V+  + DP N+G +
Sbjct: 91  VIEVPTDILAKVTGKDNPQAVAGVYAEWDTGLS-TIDR-KAAPIWLVVQAMRDPGNLGTM 148

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPYIRISNLTDALQKMHSWGFQ 208
           LR+A A    G+I     +   S    +++ GA+  + +   R +   + L++      Q
Sbjct: 149 LRTADAVGAGGLILLDDCADPFSVEAVRASMGAIFTQRLAQARWAEFQEWLRQGEG---Q 205

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKALNVSN 267
            +  S    +P           +++G E +GL P+  E A  +   + M G   +LN + 
Sbjct: 206 LVAASLRDAQPYRGAPYAAPCFVMVGNESRGL-PEEYEMACDLRVTMPMKGRADSLNAAV 264

Query: 268 AAAVALY 274
           A AV  Y
Sbjct: 265 AGAVLAY 271


>gi|254670213|emb|CBA05373.1| putative RNA methyltransferase [Neisseria meningitidis alpha153]
 gi|325130237|gb|EGC53007.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           OX99.30304]
          Length = 261

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     ++  K  + + S  + ++  GA         ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L +     F T  L  + +  L  E   +  A + G EG G+     + A     +
Sbjct: 174 LEIWLARYEDRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|54887339|gb|AAH38288.1| Rnmtl1 protein [Mus musculus]
          Length = 413

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           L+++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P +
Sbjct: 205 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 261


>gi|71403879|ref|XP_804694.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70867801|gb|EAN82843.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 299

 Score = 40.0 bits (92), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 133 QLLMVLDHV-NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-- 189
           Q L+VL  +  +P N+  + R    F+ + ++ + +   +    +A + S  L  +P+  
Sbjct: 144 QPLIVLSSLLQNPVNVAGLFRCGEIFAIEKVVVSDQAVFAHPHFVAAARSAEL-WMPWDA 202

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   NL + L  +   G+  IG+   +    +      ++ A++LGAEG G+  +     
Sbjct: 203 VMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSIASYRFPERAAILLGAEGHGVPAELLPVL 262

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
                +   G+I++LNV    A+ +Y  T+ H  +
Sbjct: 263 DVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHLME 297


>gi|169614449|ref|XP_001800641.1| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
 gi|160707352|gb|EAT82702.2| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
          Length = 1320

 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 12/156 (7%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            R + +++V   + +  N+G + R A +F  + +        +     A S +   +H P 
Sbjct: 1156 RPASVILVASLIENCTNVGGLSRVAESFGLEALYIGDLRQTAHKDFKATSVTSE-KHFPI 1214

Query: 190  --IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--------IKNDKIALILGAEGK 238
              ++   + D L  M   G+  +G+  +D    L  E        I   K  L+LG+E  
Sbjct: 1215 HELKAGGVPDFLIAMKRNGYVAVGIEQTDQSSILGTEDTGNASLGILPRKCVLVLGSEKG 1274

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+  +          +   G+ ++LNV  A  +ALY
Sbjct: 1275 GITAEVLAALDRCVEIRTVGVTRSLNVQTAGGIALY 1310


>gi|315224741|ref|ZP_07866564.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314945369|gb|EFS97395.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 248

 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 65/145 (44%), Gaps = 12/145 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIR 191
           +++ LD+V DP N+G ++R    F  + +I   +     +  + ++  G+L  +   Y+ 
Sbjct: 98  VILALDNVQDPGNLGTLIRLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYVD 157

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++        + +       +  D +     E   D + LILG E  G+ P+ +  A  +
Sbjct: 158 LAGF------LATCALPLYAMDLDGENLYTTEFPEDCV-LILGNEANGISPEVRALADGI 210

Query: 252 AHLHMPGIIK---ALNVSNAAAVAL 273
             +   G ++   +LNV+ A A+ +
Sbjct: 211 ITIPRFGKLQQTESLNVAMAGAIVV 235


>gi|74026148|ref|XP_829640.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70835026|gb|EAN80528.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 1716

 Score = 40.0 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 102/255 (40%), Gaps = 28/255 (10%)

Query: 33   MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
            MQ F  ++    +P   F Y  HT S AL       F +  T  A+A L  D ++     
Sbjct: 1473 MQHF--EASRVLEPLKEFPYIPHTKSTAL-------FCVDYTPEAVAVLTADTHIS---- 1519

Query: 93   VKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  + +  + G E V +      + +    L P         ++++   + +P N+ 
Sbjct: 1520 ------EGMSSVTGYENVQRKATPWWSSQLYDELHPRALKTERQPVIVIASLLQNPVNVA 1573

Query: 149  AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDALQKMHSWG 206
             + R    F+ + ++ +          +A + S  L  +P+  +++  L+  L  +   G
Sbjct: 1574 GLFRCGEVFAVEKVVVSDAAVLEHPHFVAAARSSDL-WLPWSAVQVKALSGYLSSLRQDG 1632

Query: 207  FQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +  +G+   +   P+       +  ++LGAEG G+  +          +   G+I++LNV
Sbjct: 1633 YTLVGIEQTAGSVPMSSYQFPKRAVIVLGAEGHGIPAQLLTVLDVCVEIPQYGLIRSLNV 1692

Query: 266  SNAAAVALY-ITQNH 279
                ++ +Y  T+ H
Sbjct: 1693 HVTGSIVMYEYTRQH 1707


>gi|117621457|ref|YP_854563.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562864|gb|ABK39812.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 253

 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 13/157 (8%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A    GI       P       K +A G+   
Sbjct: 24  AQRQLDLTVCMEEVHKPHNLAAIVRTADAI---GIHRVHAVWPKTWIHKRKGTARGSQNW 80

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++  A+ ++ + G Q +    SDS             A+++G E  G+     
Sbjct: 81  VDVKLHPDIGSAVAELKASGMQILATHLSDSSVDFRAIDYTKPTAILVGQEKHGIG---- 136

Query: 246 ETATSMAHLH----MPGIIKALNVSNAAAVALYITQN 278
           E A ++A  H    M G++++LNVS AAA  LY  Q 
Sbjct: 137 EEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQR 173


>gi|77024970|gb|ABA61397.1| rRNA methylase [uncultured marine group II euryarchaeote
           HF70_59C08]
          Length = 234

 Score = 40.0 bits (92), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+ +L  V    N+G  +R A      G+I T  ++  +   + ++A      +P +   
Sbjct: 89  LIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSDDRHRIVRAAMRTNRFMPVV--- 145

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
              D L+ + SW  + + +    +++P + ++  D I LI+G E  G+  +  E A    
Sbjct: 146 FGCDELEALKSWKGRVLAIEDVGTEEPWDADLTGDVI-LIIGGENAGVSKELLEVADQTI 204

Query: 253 HLHMPGIIKALNVSNAAAV 271
            + M G   + N+    AV
Sbjct: 205 RIPMAGFTPSYNLQAPMAV 223


>gi|298209014|ref|YP_003717193.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83848941|gb|EAP86810.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 244

 Score = 40.0 bits (92), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+ LD V DP N+G I+R    F+   +I +K      +  + ++  G+L  +  I    
Sbjct: 98  LLALDGVRDPGNLGTIIRLCDWFNIQSLICSKDTVDCYNPKVVQATMGSLTRVEVI---- 153

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT---SM 251
            TD  + +++      G   + +    + +  D   +++G E  G+  + +E      ++
Sbjct: 154 YTDLHKHLNTLDLPIFGTFMNGESVYSKPLPED-FVIVMGNEANGVTKEIEELCNHRIAI 212

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
                    ++LNV+ A A+ L
Sbjct: 213 PQFGSGAPTESLNVATATAITL 234


>gi|319764160|ref|YP_004128097.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
           BC]
 gi|330826483|ref|YP_004389786.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
           K601]
 gi|317118721|gb|ADV01210.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           BC]
 gi|329311855|gb|AEB86270.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           K601]
          Length = 158

 Score = 40.0 bits (92), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  ++ ++     E+    R S  
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDRLMRRAGLDYHEYAEVRRHSGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T  L+ M     +   L++   + +          ++ GAE +GL P+ +ET      L 
Sbjct: 64  TALLRDMRPDPSRMFALTTHGTRSVYDAGFLPGDWMVFGAESRGLPPELRETFPPAQRLR 123

Query: 256 MPGII--KALNVSNAAAVALY--ITQNHF 280
           +P +   ++LN+SNA AV +Y    QN F
Sbjct: 124 LPMLPGQRSLNLSNAVAVTVYEAWRQNSF 152


>gi|239979522|ref|ZP_04702046.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces albus J1074]
          Length = 277

 Score = 40.0 bits (92), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++ D    P NIG+I+RSA AF   G+I +   +        ++ +G+L  +P +R+ 
Sbjct: 119 LGVLFDRPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVP 178

Query: 194 NLTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQE 246
           +  + +   ++  + G   + +++D K   + ++ +      + L++G E  GL    +E
Sbjct: 179 SPAEVMAWVERRRAAGLPLVLVATDEKG--DADVYDFDFTQPVLLLVGNETSGLAGAWRE 236

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                  + M G   +LN +NAA   LY
Sbjct: 237 VCDVTVSIPMAGAASSLNAANAATAVLY 264


>gi|158313567|ref|YP_001506075.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
 gi|158108972|gb|ABW11169.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
          Length = 310

 Score = 40.0 bits (92), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 4/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V +  NDP N G ++RSA A   D ++ T            ++++G+L H+P +  
Sbjct: 143 RLVAVCEGANDPGNAGTVIRSADAAGADAVVFTGNSVDPFGGKCVRASAGSLFHLPVVVA 202

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
            +    +  +   G   +  S  + + L+       +    A + G E +GL P T  +A
Sbjct: 203 EDGPAVVGALRRAGCLVLAASGHAARDLDDLAGVGTLAGPTAWVFGNEARGLTPATAASA 262

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   + + G  ++LN++ A+A+ LY +
Sbjct: 263 DAAVRVPVYGQAESLNLAVASALCLYAS 290


>gi|225432460|ref|XP_002278797.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147777374|emb|CAN73835.1| hypothetical protein VITISV_043470 [Vitis vinifera]
 gi|297736948|emb|CBI26149.3| unnamed protein product [Vitis vinifera]
          Length = 217

 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ ++   HN+G + RSA A     +I   R   +     +  + G+  H+ +    +L
Sbjct: 7   VVVHNIAKRHNVGTLARSASALGVSELILVGRRDFN-----SFGSHGSTSHLRFRHFHSL 61

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            DA   +        G+  +D+   + Q       A +LG EG GL  K  E      ++
Sbjct: 62  LDARHFLKEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSVKECEICDFFVYI 121

Query: 255 -HMPGIIKALNVSNAAAVALY 274
               G   +LNV+ AA++ L+
Sbjct: 122 PQYGGGTASLNVTVAASIVLH 142


>gi|134101781|ref|YP_001107442.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291009830|ref|ZP_06567803.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914404|emb|CAM04517.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 235

 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 4/145 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+ VL  ++DP N G ++R A A     ++       + +    ++++G+L H+P  R  
Sbjct: 81  LVAVLVGISDPGNAGTVVRVADAAGAGAVLFAGDTVDAFNGKAVRASTGSLFHLPVARDR 140

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQETAT 249
           +++         G + +G    +   L+       +A     + G+E  GL         
Sbjct: 141 DVSAVFAACREAGLRLVGADGHATDDLDSADLGGALAAPTAWVFGSEAHGLPGDVTAQLD 200

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LN++ AAAV LY
Sbjct: 201 GTLRVPLYGRAESLNLATAAAVCLY 225


>gi|119960734|ref|YP_947381.1| 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119947593|gb|ABM06504.1| putative 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
          Length = 303

 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 28/174 (16%)

Query: 125 TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAK 178
           +LD+V ++  +L+ V+  V DP N G +LR+A A   D ++ T      Y+P       +
Sbjct: 120 SLDSVLDAGPRLIAVMCQVRDPGNAGTVLRAADAAGADAVVLTGSSVDIYNPKA----VR 175

Query: 179 SASGALEHIPYIRISNLTDALQK--------MHSWGFQTIGLSSDSKKPLEQEIKNDKI- 229
           S +G+L H+P +  +++ + + +        + + G+ T+ L     +   + + N  + 
Sbjct: 176 STAGSLFHLPVVLGADVEELVAQCRRRGIGILAADGYGTVNLDKLQDENAARRLGNGSVA 235

Query: 230 ---------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    A + G E +GL       A     + + G  ++LN+  AA V LY
Sbjct: 236 SDYALESPTAWLFGNEAQGLSDAELALADHRVAVPVYGAAESLNLGTAATVCLY 289


>gi|62897359|dbj|BAD96620.1| RNA methyltransferase like 1 variant [Homo sapiens]
          Length = 420

 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           LL++ D++ DP N+G ILRSA    C  ++ TK         + ++  GA   +P I
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDVWEPKVLRAGMGAHFRMPII 266


>gi|73967329|ref|XP_853914.1| PREDICTED: similar to RNA methyltransferase like 1 [Canis
           familiaris]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190
           + D++ DP N+G ILRSA    C  ++ TK    P E  VL ++A GA   +P I
Sbjct: 213 ICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVL-RAAMGAHFQVPII 266


>gi|260494497|ref|ZP_05814627.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197659|gb|EEW95176.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 258

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192
           L++LD V+DP N+G I+R   A +   II TK    + +  + ++  G++ ++   Y+  
Sbjct: 110 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 169

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           S + + L K +++   +  L   +    + E+K +K A++ G EG G+            
Sbjct: 170 SEIINFL-KENNYSIISTYLDKTAIPYNKIELK-EKNAIVFGNEGNGISSDFINITDYKT 227

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + +    ++LNV+ A  + LY
Sbjct: 228 IIPILSNTESLNVAVATGIILY 249


>gi|225012730|ref|ZP_03703165.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225003263|gb|EEG41238.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 264

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 22/155 (14%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESA-------VLAKSASG 182
           +++V++    P NIGA+ R+A A   D +I     T  Y+P+          +L  + + 
Sbjct: 115 IVLVIEAPEKPGNIGALYRTAAAAKIDAVIIANPKTDFYNPNSIRSSLGGIFILPTAIAS 174

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++E I Y++ + +T A   ++S              P +Q       AL++G E  GL  
Sbjct: 175 SIEVIAYLKENKITIATAAINSKAV-----------PYDQFEYTPPCALVMGTESTGLDQ 223

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      + M   + +LN+S +A + +Y  Q
Sbjct: 224 LWLNETNQNLMIPMADEVDSLNLSVSAGILMYECQ 258


>gi|224534903|ref|ZP_03675472.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
 gi|224513843|gb|EEF84168.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
          Length = 218

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 3/146 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L  VL+ +  PHN  A +R+        +   ++   ++  +      G+ + I  
Sbjct: 31  RTNYLTFVLEDIFQPHNASATIRTGEILGLSDVHIIEK--NNKCTLNPDITLGSSQWINL 88

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  N   A+ ++ S G+  +  S + +   LE    N+K+A+  G E  GL  +    A
Sbjct: 89  NKYKNTKLAIDRLKSNGYIIVATSLNEQSVNLENFPINNKMAVFFGTELTGLSAEVLGAA 148

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M G  ++ N+S A A+ +Y
Sbjct: 149 DLCVKIPMYGFTQSYNISVAVAIVIY 174


>gi|83815691|ref|YP_445907.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|294507817|ref|YP_003571875.1| methyltransferase [Salinibacter ruber M8]
 gi|83757085|gb|ABC45198.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|294344144|emb|CBH24922.1| methyltransferase [Salinibacter ruber M8]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ +V   HN+G++ R++ A   + I  T      E   L K+A GA + + + +    
Sbjct: 27  LVVHNVRSIHNVGSMFRTSDAARIEHIHLTGFTGTPEHKDLHKTALGAQDAVEWSQHDEP 86

Query: 196 TDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              L+ +   G+    L  +  +++P         IAL++G E +G+ P   +       
Sbjct: 87  RPLLRDLKDAGYTIAALEQTDHTQRPDAAPADAFPIALVVGNEVRGIEPDVLDAVDLALE 146

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G   +LNV  A  +A+Y
Sbjct: 147 IPQYGAKISLNVGVAYGIAVY 167


>gi|255652983|ref|NP_001157404.1| RNA methyltransferase-like protein 1B [Danio rerio]
          Length = 449

 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           L ++ D V DP N+G++LRSA A  C  ++ TK         + ++A GA   +P I
Sbjct: 231 LTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAMGAHFRLPII 287


>gi|160358744|sp|A1L2E4|RML1B_DANRE RecName: Full=RNA methyltransferase-like protein 1B
          Length = 445

 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           L ++ D V DP N+G++LRSA A  C  ++ TK         + ++A GA   +P I
Sbjct: 231 LTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAMGAHFRLPII 287


>gi|38234645|ref|NP_940412.1| putative RNA methylase family protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200909|emb|CAE50624.1| Putative RNA methylase family protein [Corynebacterium diphtheriae]
          Length = 172

 Score = 40.0 bits (92), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H P 
Sbjct: 19  RRHCLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLMHHP- 77

Query: 190 IRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                  D +      G   + + ++    PLE     ++  L+ G EG G+  + Q+ A
Sbjct: 78  ----TTADVVAWAKQQGLTIVAIDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDNA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   G  +++N   AA +A++
Sbjct: 134 RMTCSIAQFGSTRSINAGVAAGIAMH 159


>gi|281422707|ref|ZP_06253706.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205]
 gi|281403186|gb|EFB33866.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGA 183
           ++  S+L + LD V DP N+G I+R A  F    I     T   Y+P    V A   S A
Sbjct: 96  SINTSELSLALDGVQDPGNLGTIIRIADWFGITHIYCSQDTADVYNP--KVVQATMGSIA 153

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              + Y  +  L ++L           G   D     +Q+++N  + +++G EGKG+ P
Sbjct: 154 RVKVEYGDLLGLVESLPA----DVPVYGTLLDGDNIYQQKLENRGL-IVMGNEGKGISP 207


>gi|302848864|ref|XP_002955963.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
           nagariensis]
 gi|300258689|gb|EFJ42923.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
           nagariensis]
          Length = 312

 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 2/146 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   +L +++ + D  N+ A+ R+A A     +    R    +  V  ++A+GA + +  
Sbjct: 88  RTFSVLPIVEGLYDMGNLAAVCRTADALGYGAVHCINR-GDVKYKVSQRTAAGADKWLDV 146

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  + L  + S G+Q I    S S   +E+       A ILG E  G+  +    A
Sbjct: 147 KMWDSTAECLAAVRSAGYQIITTHLSQSAITIEEVDWTRPTAFILGNEKFGVSEEAVAAA 206

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            + A + M G++++ N+S A+A+ +Y
Sbjct: 207 DACAIIPMTGMVESFNISVASALIMY 232


>gi|294463916|gb|ADE77479.1| unknown [Picea sitchensis]
          Length = 327

 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 74/154 (48%), Gaps = 17/154 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGIIT---TKRYSPSESAVLAKSASGAL 184
           R   + +V++ + D  NI A++R+A  + F    +IT   TKRY  S +  +     G+ 
Sbjct: 128 RTYSICLVVEGLTDFGNISAVIRTADALGFQSVHVITNDSTKRYKKSRNVSM-----GSE 182

Query: 185 EHIPYIRISNLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           + +   +  N  +  + + S G++     +G  + S   ++  +     A++LG E +G+
Sbjct: 183 KWLDIEQWDNTWECFEVLRSRGYRIAVTHVGNDTVSVHDMDWTLPT---AIVLGNEHRGI 239

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + +     + M G++ + NVS AA + ++
Sbjct: 240 SGEALKFSDIKCSIPMTGMVDSFNVSVAAGIFMH 273


>gi|120537815|gb|AAI29485.1| Rnmtl1-b protein [Danio rerio]
          Length = 448

 Score = 40.0 bits (92), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           L ++ D V DP N+G++LRSA A  C  ++ TK         + ++A GA   +P I
Sbjct: 234 LTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAMGAHFRLPII 290


>gi|88854933|ref|ZP_01129599.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88816094|gb|EAR25950.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 42/152 (27%)

Query: 146 NIGAILRSAVAFSCD-------------GIITTKRYS-----PSESAVLAKSASGALEHI 187
           NIG+I+RSA AF  D             G + T RY      P  +A L  +A+  L   
Sbjct: 76  NIGSIVRSANAFGADTVHIIGRRRWNKRGAMVTDRYQHVLHHPDVAAFLEWTAANDL--- 132

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P I I N+  ++          I  + D  K         +  L+ G EG GL P+  E 
Sbjct: 133 PIIAIDNVPGSV----------IIETFDIPK---------RCVLLFGQEGPGLSPEAIEA 173

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277
           AT +  +   G  +++N S AAAVA+  +ITQ
Sbjct: 174 ATDVVEISQFGSTRSINASAAAAVAMHNWITQ 205


>gi|321463166|gb|EFX74184.1| hypothetical protein DAPPUDRAFT_307431 [Daphnia pulex]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           L ++ D++ DP N+G I+R A A  C  +ITT        + + ++A+GA
Sbjct: 252 LTIICDNIRDPGNMGTIIRCAAAVGCKALITTPDCVDVWDSKVLRAAAGA 301


>gi|261212101|ref|ZP_05926387.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
 gi|260838709|gb|EEX65360.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
          Length = 244

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 33/226 (14%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLS-- 123
           +F +   KN L   +   N+ H F       +    + G E++   L    + + L+S  
Sbjct: 24  LFLVQGEKNVLELTNSTLNVQHIFATAEFLAEHAQALAGFESIEATLDDLTKVSTLVSNN 83

Query: 124 --------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPS 171
                   P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P 
Sbjct: 84  AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP- 142

Query: 172 ESAVLAKSASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKND 227
                 K+ S  +     +++S  +L D L K +   +G    G+S       +   K +
Sbjct: 143 ------KTISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAE 191

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            I L++G+E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 192 GI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|86605765|ref|YP_474528.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86554307|gb|ABC99265.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
           JA-3-3Ab]
          Length = 151

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 25/142 (17%)

Query: 144 PHNIGAILRSAVAFSCD-------GIITTKRYSPSESAVLAKSASGALEHIP---YIRIS 193
           P N G I R+  A           G   + RY       L ++     EH+    Y   S
Sbjct: 13  PANTGNIARTCAATRTPLHLVDPLGFRLSDRY-------LRRAGLDYWEHVQLHRYPSWS 65

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMA 252
            L  A  +   W F   G      K L  E+       L+ G+E +GL P   ET  S+ 
Sbjct: 66  ALVQAHPEARFWCFSVRG------KALYTEVAYQPGDWLVFGSESRGLDPMFLETYPSV- 118

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + + G +++LN+SNA A+AL+
Sbjct: 119 RIPLSGPVRSLNLSNAVAIALF 140


>gi|260592420|ref|ZP_05857878.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
 gi|260535656|gb|EEX18273.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
          Length = 239

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--Y 189
           +QL++ LD V DP N+G I+R A  F    I  +   +   +  + ++  G++  +   Y
Sbjct: 91  NQLVLALDGVQDPGNLGTIIRVADWFGIKDIYCSHDTADCWNPKVVQATMGSIARVQLHY 150

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           + ++ + ++L       +       D +   +QE+ +  + +++G EGKG+ P
Sbjct: 151 VDLNKMAESLPA----DYPIYATLLDGENIYKQELSHHGM-IVMGNEGKGISP 198


>gi|225715396|gb|ACO13544.1| RNA methyltransferase-like protein 1A [Esox lucius]
          Length = 329

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           L ++ D+V DP N+G ILR AVA  C  I+ TK
Sbjct: 243 LSLICDNVRDPGNLGTILRCAVAAGCHNILLTK 275


>gi|145589617|ref|YP_001156214.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048023|gb|ABP34650.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 274

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 14/148 (9%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD V D  N+G+ILR+A A     ++     +   S  + ++  GA  H    R+ +
Sbjct: 129 VVILDRVQDAGNVGSILRTAAAAGFTQVLALSGCAHLWSNKVLRAGMGA--H----RLLD 182

Query: 195 LTDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETA 248
           L +     Q + +     +  ++D+K  L   +KND    +A ++G+EG+G+       A
Sbjct: 183 LYEGWSNQQVLSAVTAPLLAATADAKCDLF-SLKNDLLHPVAWVMGSEGQGVSEDLLAQA 241

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
             ++ + +   +++LNVS AAA+ L+ T
Sbjct: 242 KGIS-IPIDPRVESLNVSTAAAICLFET 268


>gi|260063680|ref|YP_003196760.1| rRNA methylase [Robiginitalea biformata HTCC2501]
 gi|88783125|gb|EAR14298.1| rRNA methylase [Robiginitalea biformata HTCC2501]
          Length = 237

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           + LD V DP N+G ++R    F    ++    T   Y+P    + A   S A   + Y  
Sbjct: 96  LALDGVRDPGNLGTLIRLCDWFGIGELLCSPDTVDCYNPK--VLQATMGSIARVRVVYKD 153

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++   DA   +  +G    G +   ++PL   I      L++G+E  GL    ++  +  
Sbjct: 154 LAETLDA-SGLPVYGASMEGEAIGGEQPLSPGI------LVMGSESHGLSGPVRDRLSQT 206

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +   G  ++LNV+ AAA+ LY
Sbjct: 207 WAIPSFGRAESLNVATAAAILLY 229


>gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 248

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 9/140 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD+  +  N GA++R A  F   G++TT    P    V+   A         +  + 
Sbjct: 109 VVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTVDPWHPTVVRGGAG--------LHFAT 160

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             + L+           L  +       ++ +D + L  G+E  GL P+ +  A  +  L
Sbjct: 161 AVERLEVADLPAGPLFALDPEGDDIRSTKLPDDAV-LAFGSERTGLSPELRARADHLLSL 219

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M   + + N++ + A+ LY
Sbjct: 220 PMRPQVSSYNLATSVAMTLY 239


>gi|26380829|dbj|BAC25446.1| unnamed protein product [Mus musculus]
 gi|127799761|gb|AAH90975.2| RNA methyltransferase like 1 [Mus musculus]
          Length = 311

 Score = 40.0 bits (92), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           L+++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P +
Sbjct: 103 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 159


>gi|294787535|ref|ZP_06752788.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315226880|ref|ZP_07868668.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|294484891|gb|EFG32526.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315121012|gb|EFT84144.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 330

 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 19/163 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +N         + DP N G I+R A A   DG+I         +  + +S +G+L H+P 
Sbjct: 163 KNRGFYAACWQLRDPGNAGTIIRLADAAGLDGVILVDDCVDETNPKVVRSTAGSLFHLPI 222

Query: 190 IRISNLTDALQKMHSWGFQTIG-----------------LSSDSKKPLEQEIKNDKIALI 232
           IR+  + D        G   +                  L    +   +QE       ++
Sbjct: 223 IRM-GIDDFFAFAQEHGATVVAADAYGTDQVPVKELPAFLDEWRRTGQDQEKAGSAPTIV 281

Query: 233 L-GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L G E +GL             + + G  ++LNV+ +AAV LY
Sbjct: 282 LFGNEARGLDDPLINRCQEAVRIPLYGKAESLNVAMSAAVILY 324


>gi|298345662|ref|YP_003718349.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|298235723|gb|ADI66855.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
          Length = 198

 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 4/141 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + +++V    N G+I+R+A       +    R   +    +       L H P ++  
Sbjct: 49  LEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRRRFNRRGAMVTDRYLHLHHHPEVQDL 108

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               A Q++   G           +PLE      +  ++ G E +GL P  Q     +  
Sbjct: 109 VSYAAQQELTIVGMDNF----PGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLVQ 164

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G  ++LNV +AAA++++
Sbjct: 165 ITQYGSTRSLNVGHAAAISIW 185


>gi|133777689|gb|AAI15624.1| RNA methyltransferase like 1 [Mus musculus]
 gi|133777901|gb|AAI15623.1| RNA methyltransferase like 1 [Mus musculus]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           L+++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P +
Sbjct: 103 LVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIV 159


>gi|300780369|ref|ZP_07090225.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300534479|gb|EFK55538.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 223

 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187
           R     + +++  +  NIG ++R+A AF  +   I+  KR++   + V  +      +HI
Sbjct: 70  RRHPFHVAIENFENDMNIGTVVRTANAFMAEAVHIVGRKRWNRRGAMVTDR-----YQHI 124

Query: 188 PYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQ 245
             I    + D L+   + G   + + ++    PLE  E+  D + L+ G EG G+  + Q
Sbjct: 125 --IHHETVDDLLEWATARGVAVVAIDNTPGSVPLETAELPRDCV-LLFGQEGPGVTAEAQ 181

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + A     +   G  +++N   AA +A++
Sbjct: 182 QAAVMTCSIAQFGSTRSINAGVAAGIAMH 210


>gi|221134031|ref|ZP_03560336.1| rRNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 91/205 (44%), Gaps = 23/205 (11%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKE---AVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           + W  +LP  F V  +  + ++ I   +    +   + LE+   L+       +SQ  + 
Sbjct: 54  VQWAHDLPISFNVIELTTKQMNNISDTKTPPGIIACVPLESTDQLTTNTTTSADSQRYVY 113

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  V DP N+G I+R+   F    ++ +       +A + +++ GAL ++P  +  +L  
Sbjct: 114 LHEVQDPGNLGTIIRTLAWFGDVTLLLSPNSVDPFNAKVVRASMGALFYVPIEQDISLAQ 173

Query: 198 ALQKMHSWGF-----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK---TQETAT 249
             ++   + +     ++I  +S    P            + G E +G+ P+   TQ  AT
Sbjct: 174 LNERFDEFAYLDMNGESIAATSFKTMP----------CYVFGNEARGV-PRDALTQMPAT 222

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +   +   G I++LN+++A  + +Y
Sbjct: 223 AFT-IKGAGNIESLNLASAVNMCMY 246


>gi|84495467|ref|ZP_00994586.1| putative rRNA methylase [Janibacter sp. HTCC2649]
 gi|84384960|gb|EAQ00840.1| putative rRNA methylase [Janibacter sp. HTCC2649]
          Length = 272

 Score = 39.7 bits (91), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 1/138 (0%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           V + +  P N+GA+LR+A A   D +I     +   +  + + + G +  IP +  + L 
Sbjct: 127 VCEGLEKPGNLGAMLRTADAAGVDAVIAVDPVTDWGNPNVVRGSKGTVFSIP-VASATLG 185

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           + +  +   G + I  + D++           +A+ +G E  GL  +    A     + M
Sbjct: 186 ETIDWLREGGIRLIATTPDTETLHTDADLTGGVAIAVGTEKFGLTDEALRAADLRVRIPM 245

Query: 257 PGIIKALNVSNAAAVALY 274
            G + +LN S AAA+ +Y
Sbjct: 246 HGQVNSLNASAAAAIVVY 263


>gi|163856832|ref|YP_001631130.1| putative RNA methyltransferase [Bordetella petrii DSM 12804]
 gi|163260560|emb|CAP42862.1| putative RNA methyltransferase [Bordetella petrii]
          Length = 258

 Score = 39.7 bits (91), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 29/261 (11%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNA-LAR 80
           R++  +K++Q   Q +    +P    L GVH   A L     P+  +F     +   LA 
Sbjct: 7   RDNPQFKQLQRLAQHAGRRGEPA--ILEGVHLCQAWLAEAGPPAWAVFDAGRVQQPELAA 64

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVH-------QGLALETAPLLSPTLDAVRNSQ 133
           L           +  VPP+    +  +   H       QG+     P  +P L A R  +
Sbjct: 65  L-----------LAAVPPRQALLLESRLLRHLETVETGQGVLFVVDPP-TPALPA-RLDE 111

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++ LD V DP N+G ILR   A     ++ +   + + S  + +   GA   +     +
Sbjct: 112 PMVWLDRVQDPGNVGTILRVCAAAGIGRVLLSPGCAAAWSPKVLRGGQGAHFALALHEHA 171

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L    Q++          + +  + L         A + G EG+G+ P  Q+ A     
Sbjct: 172 DLQACAQRLE---IPLAATTLEGAQDLYATRLPPACAWVFGHEGQGVAPALQQAAALRVR 228

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +     +++LNV+ AAA+ L+
Sbjct: 229 IDHAPAVESLNVAVAAALCLF 249


>gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 182

 Score = 39.7 bits (91), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD +   HNIG++ R+A AF  + I      +   +  + K+A GA E + +    
Sbjct: 25  IVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGATETVVWEHHE 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           N+ + ++ +         +          + K +   K ALI G E  G+  +       
Sbjct: 85  NVLEVIENLKKDEISVFAIEQVENAIFLNDFKVEATKKYALIFGNEVFGVNQEAIRLCDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   +LN+S +  + ++
Sbjct: 145 TIEIPQLGTKHSLNISVSTGIVVW 168


>gi|156386580|ref|XP_001633990.1| predicted protein [Nematostella vectensis]
 gi|156221067|gb|EDO41927.1| predicted protein [Nematostella vectensis]
          Length = 274

 Score = 39.7 bits (91), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 37/178 (20%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP----- 188
           L ++ D V DP N+G I+R+  A  C  +ITT+  +      + +  +G    +P     
Sbjct: 91  LTVICDRVKDPSNLGTIVRTCAAAGCQALITTEYSTDLWDPKVLRGGAGGHFRVPLYGLL 150

Query: 189 -YIRISNL-----------TDALQKM----------------HSWGFQTIGLSSDSKKPL 220
            + +I+++           +D   K+                H +G   + L S      
Sbjct: 151 SWKQIADMLGDDTRLYLAESDNTGKIIISPWKYFVVENPISWHCYGTLNLDLGSIIIPYF 210

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALY 274
           E +      ALI+G E  G+  + Q  A        H+ M G I +L+   + A+ +Y
Sbjct: 211 EVDWTLGPSALIVGGETTGISTEAQMLACGERGQAVHIPMVGNIDSLSAGISVALIVY 268


>gi|328779499|ref|XP_001120040.2| PREDICTED: RNA methyltransferase-like protein 1-like [Apis
           mellifera]
          Length = 417

 Score = 39.7 bits (91), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 18/189 (9%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNN-- 63
           K  E   + K + + KL+ N +    + +   KSR   + +N + L G   ++ AL +  
Sbjct: 80  KNKETEITAKKNKFMKLKENDKIITSLMT-KLKSRKKREKDNEIILEGQRLITDALKSGV 138

Query: 64  -PSRKIFQ---LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
            PS  I+    ++AT            LP    +  VP +TI            L +   
Sbjct: 139 IPSVIIYNDPSIIAT----------LKLPEEVKLYKVPYKTIQLWSALTTSPGLLGIFKT 188

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P ++  +       L ++ D++ DP N+G+I+R A A  C+ +I  K         + +S
Sbjct: 189 PDVNNNIPVNNALPLTIICDNIRDPGNLGSIMRVATAVGCEKLILMKGCVDLWDPKVLRS 248

Query: 180 ASGALEHIP 188
           A+G    +P
Sbjct: 249 AAGTHFQLP 257


>gi|260578510|ref|ZP_05846422.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603349|gb|EEW16614.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 227

 Score = 39.7 bits (91), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 6/146 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L+H   
Sbjct: 74  RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLQHH-- 131

Query: 190 IRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              + + + L+     G   + + ++    PLE     ++  L+ G EG G+  + Q+ A
Sbjct: 132 ---ATVGEVLEFAAREGLVVVAVDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDAA 188

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   G  +++N   AA +A++
Sbjct: 189 RMTVSIAQFGSTRSINAGVAAGIAMH 214


>gi|322505559|emb|CAM43084.2| conserved hypothetical protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 2037

 Score = 39.7 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 5/163 (3%)

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            L P     +   +++V   + +P NI  + R    F+   I+   +        +A + S
Sbjct: 1868 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPDKRVFEHPHFVAAARS 1927

Query: 182  GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238
              L  IP+  +   +L   L+ +   G+  +G+   +    +E      + A++LGAEG+
Sbjct: 1928 AEL-WIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFSFPKRCAVVLGAEGQ 1986

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
            G+             +   G+I++LNV  A AV +Y  T+ H 
Sbjct: 1987 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHL 2029


>gi|154343391|ref|XP_001567641.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 2037

 Score = 39.7 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 5/163 (3%)

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            L P     +   +++V   + +P NI  + R    F+   I+   +        +A + S
Sbjct: 1868 LHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPDKRVFEHPHFVAAARS 1927

Query: 182  GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGK 238
              L  IP+  +   +L   L+ +   G+  +G+   +    +E      + A++LGAEG+
Sbjct: 1928 AEL-WIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFSFPKRCAVVLGAEGQ 1986

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
            G+             +   G+I++LNV  A AV +Y  T+ H 
Sbjct: 1987 GVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHL 2029


>gi|228472383|ref|ZP_04057148.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228276251|gb|EEK14986.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 220

 Score = 39.7 bits (91), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R     + ++ +   HN  A++R+   F      I  ++Y      + +K A GA + + 
Sbjct: 31  RTEHFTVAIEDLFQVHNTSAVVRTCEVFGVQTAHIIEEKYG---KRLDSKIAMGAEKWVT 87

Query: 189 YIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            IR  +    ++ +   G++ +  +      PL++     K A   G E  GL  +    
Sbjct: 88  TIRYPHTQPCIEALRGQGYRIVATVPPPGATPLQEFDITPKSAFFFGTERDGLSQEVISQ 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL-YIT 276
           A     + M G  ++LN+S + A+ L Y+T
Sbjct: 148 ADECLTIPMVGFTESLNISVSVAIILQYVT 177


>gi|325300674|ref|YP_004260591.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324320227|gb|ADY38118.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 251

 Score = 39.7 bits (91), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 5/160 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           LA+   P+    ++   +S L + LD V DP N+G I R A  F  + +  ++  +   +
Sbjct: 84  LAVFEQPVYEWNINTAAHS-LCLALDDVQDPGNVGTIARIADWFGIEHVFCSQGTADIYN 142

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               ++  GA+  + +    NL + ++   +      G   + K    + ++N  I +I+
Sbjct: 143 PKTVQATMGAIARVQF-HYCNLPEFIRSASAQDIPLFGTFLNGKDIYGENLENHGI-IIM 200

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G EG G+     +  T    L +P   +  + S +  VA+
Sbjct: 201 GNEGNGISTPIAQCITH--RLFIPNYPQGRSTSESLNVAI 238


>gi|301062443|ref|ZP_07203095.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
 gi|300443443|gb|EFK07556.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
          Length = 272

 Score = 39.7 bits (91), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 11/139 (7%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTD-ALQ 200
           DP N+GA++R++ AF    I+  K  + P     L  + S         R+S     AL+
Sbjct: 121 DPSNVGAVIRASAAFGVKQIVMLKEAAHPFHPKSLRVAGSNIF------RVSFFQGPALR 174

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++       I +S++ K     E   D   L+ G EG G+ P+  + + +++ + M   +
Sbjct: 175 QLKKLEIFLIIMSTEGKDAARFEFP-DSFCLLPGMEGPGI-PEILKGSGNVS-IPMAKGV 231

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN + A  + LY+ +N 
Sbjct: 232 ESLNAAMATGIVLYLWRNR 250


>gi|182413334|ref|YP_001818400.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177840548|gb|ACB74800.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 262

 Score = 39.7 bits (91), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  L + LD V D  N+G +LR A  F+ D ++ +   +      +  ++ G+   +  +
Sbjct: 110 NHGLTLALDGVQDAGNVGTLLRIADWFALDRVLLSPDCADVFHQKVINASMGSFARV-QV 168

Query: 191 RISNLTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               L  AL   ++   G    G +  +  PL   +      +++G+EG+GL P   E  
Sbjct: 169 HSVELPTALAGVRVPVLGCDLTGENVHALPPLADAV------IVIGSEGRGLSPAVAELV 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAV 271
           +    +   G  ++LN + AAA+
Sbjct: 223 SRRVTIPRYGQAESLNAAIAAAI 245


>gi|116620879|ref|YP_823035.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224041|gb|ABJ82750.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 180

 Score = 39.7 bits (91), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD+V   +N+G+  R+A A S + +  +   +    + + K+A GA   + +      
Sbjct: 25  VLLDNVRSMYNVGSFFRTADAASVEKLYLSGITAQPPKSAITKTALGAENTVCWEHAWEA 84

Query: 196 TDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              ++K  + G++   + +S     L        + +I G E  G+RP       +   +
Sbjct: 85  RPLVEKARAQGYEIAAVETSVHAVDLFDWTPRFPVLVIFGHEVDGIRPAISALCDTHVRI 144

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M G   +LNV+ A  V +Y
Sbjct: 145 PMLGAKHSLNVATAGGVVIY 164


>gi|39934266|ref|NP_946542.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|192289793|ref|YP_001990398.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           TIE-1]
 gi|39648114|emb|CAE26634.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|192283542|gb|ACE99922.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           TIE-1]
          Length = 151

 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR     + +  I      P+      +S    L+ +  +R     D+  K  
Sbjct: 11  PQNTGTILRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVR----HDSWLKFE 66

Query: 204 SW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            W    G + I L++  ++P  ++       L+LG E  G+       A +   + M   
Sbjct: 67  QWRKTAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIPMQPG 126

Query: 260 IKALNVSNAAAVAL--YITQNHFAK 282
           +++LN++ AAAV     + Q  FA+
Sbjct: 127 LRSLNIAMAAAVVTGEALRQTQFAQ 151


>gi|225011172|ref|ZP_03701633.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
 gi|225004682|gb|EEG42643.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
          Length = 273

 Score = 39.7 bits (91), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189
           L +V +    P NIGA+LR+A A   D +I     T  Y+P+    + +S+ G +  +  
Sbjct: 125 LYLVAEAPEKPGNIGALLRTADAAGIDAVIIANPKTDLYNPN----VIRSSVGGVFTVA- 179

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + +    + L  + +        +  + KP  +       A+++G E  GL     E + 
Sbjct: 180 VAMGTSKEVLDFLQAAKANVYAAALQASKPHTEVSYTGTTAIVVGTEATGLEAIWLEQSN 239

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G I ++NVS AA + ++
Sbjct: 240 QNIRIPMRGKIDSMNVSVAAGILIF 264


>gi|330827726|ref|YP_004390678.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
 gi|328802862|gb|AEB48061.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
          Length = 243

 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A    GI       P       K +A G+   
Sbjct: 14  AQRQLDLTVCMEEVHKPHNLAAIVRTADAI---GIHRVHAVWPKTWIHKRKGTARGSQNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++  A+ ++ + G Q +    SDS             A+++G E  G+     
Sbjct: 71  VDVKLHPDIGTAVAELKASGMQILATHLSDSSVDFRAIDYTKPTAILVGQEKHGI----G 126

Query: 246 ETATSMAHLH----MPGIIKALNVSNAAAVALYITQNH 279
           E A ++A  H    M G++++LNVS AAA  LY  Q  
Sbjct: 127 EEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQ 164


>gi|163803682|ref|ZP_02197544.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159172521|gb|EDP57384.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 244

 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P L       L++ LD V+DP N+G I+R A  +    II +      Y+P       K+
Sbjct: 92  PELKVPEAKGLMIALDGVSDPGNLGTIIRVADWYGIQHIIASTDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     +++S L D    +        G   + +   + E   D I L++G+E  G
Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEDANLPVYGAFLEGESVHKTEFSADGI-LLMGSESHG 202

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R    +  T    +   G  ++LNV+ A  + L
Sbjct: 203 VREAASKFVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|42525569|ref|NP_970667.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41815580|gb|AAS10548.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 262

 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLT 196
           + +  P NIG+I R+A +F  + +  +      +S    ++A G  E++P+ R  + +L 
Sbjct: 125 EDIRTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWERADLESLP 184

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLH 255
           D    +   G   I      KK +          +++G+E  G+ P+  + A   +  + 
Sbjct: 185 DLPLIVLETGGTDISKFEFPKKGI----------VVIGSEELGVSPEAVKKAQGRVITIP 234

Query: 256 MPGIIKALNVSNAAAVAL 273
           M GI  ++NVS A  + +
Sbjct: 235 MYGIKASINVSVAFGICM 252


>gi|163753137|ref|ZP_02160261.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
 gi|161326869|gb|EDP98194.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
          Length = 176

 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+ + L   ++D  ++S+   L+++LD++   +NIG++ R++ AF  + I      +   
Sbjct: 4   LKNSELNRLSVDEFKSSEKTSLIVILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---I 229
              + ++A GA + + +    +    ++++     +   +       +  E + +K    
Sbjct: 64  HKDIHRTALGATDSVVWEYCEDTLALVKELQENDVKVAAIEQAENAMMLNEFQPEKQHTY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL+ G E KG++ +    +  +  +   G   +LN+S +A V L+
Sbjct: 124 ALVFGNEVKGVQQEVVSASDYVLEIPQFGTKHSLNISVSAGVVLW 168


>gi|68535279|ref|YP_249984.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68262878|emb|CAI36366.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 227

 Score = 39.7 bits (91), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 6/146 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L+H   
Sbjct: 74  RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLQHH-- 131

Query: 190 IRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              + + + L+     G   + + ++    PLE     ++  L+ G EG G+  + Q+ A
Sbjct: 132 ---ATVGEVLEFAAREGLVVVAVDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDAA 188

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   G  +++N   AA +A++
Sbjct: 189 RMTVSIAQFGSTRSINAGVAAGIAMH 214


>gi|315657840|ref|ZP_07910720.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315491637|gb|EFU81248.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 230

 Score = 39.7 bits (91), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 6/142 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + +++V    N G+I+R+A       +    R   +    +       L H P ++  
Sbjct: 81  LEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRRRFNRRGAMVTDRYLHLHHHPEVQDL 140

Query: 194 NLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
               A Q++       +G+ + S  +PLE      +  ++ G E +GL P  Q     + 
Sbjct: 141 VSYAAQQEL-----TIVGMDNFSGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLV 195

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            +   G  ++LNV +AAA++++
Sbjct: 196 QITQYGSTRSLNVGHAAAISIW 217


>gi|312882046|ref|ZP_07741800.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370341|gb|EFP97839.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 244

 Score = 39.7 bits (91), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 17/218 (7%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLS-- 123
           +F +   KN L  +  D  +   F  +    +    ++G E +   L    + + L+S  
Sbjct: 24  LFLVQGEKNVLELVKTDYRVQQVFATQDFLDRYSQCLIGYECIEATLEDLTKASTLVSNN 83

Query: 124 --------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                   P L        ++ LD V+DP N+G I+R A  +    I+ ++  +   S  
Sbjct: 84  AAIAIVEIPQLIEPEAEGFMIALDGVSDPGNLGTIIRLADWYGIKHIVASEDCADPYSPK 143

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
              +  G+   +   ++ NL D L+  H       G   D +           I L++G+
Sbjct: 144 TISATMGSFARVTVTQL-NLPDYLKHAH---LPIYGAFLDGENVHNVSFSAQGI-LLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T+   +   G  ++LNV+ AA + +
Sbjct: 199 ESHGIREQASQHVTNKITIPSFGGAESLNVAMAAGIII 236


>gi|325475311|gb|EGC78496.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 262

 Score = 39.7 bits (91), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLT 196
           + +  P NIG+I R+A +F  + +  +      +S    ++A G  E++P+ R  + +L 
Sbjct: 125 EDIRTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWERADLGSLP 184

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHLH 255
           D    +   G   I      KK +          +++G+E  G+ P+  + A   +  + 
Sbjct: 185 DLPLIVLETGGTDISKFDFPKKGI----------VVIGSEELGVSPEAVKKAQGRVITIP 234

Query: 256 MPGIIKALNVSNAAAVAL 273
           M GI  ++NVS A  + +
Sbjct: 235 MYGIKASINVSVAFGICM 252


>gi|291240059|ref|XP_002739939.1| PREDICTED: TAR (HIV-1) RNA binding protein 1-like [Saccoglossus
            kowalevskii]
          Length = 1247

 Score = 39.7 bits (91), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 12/201 (5%)

Query: 83   WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLM 136
            W    P  + + T    T+D  +    V + +   +  LL   + +  N       QL++
Sbjct: 1039 WKIRGPMDYTITT--GDTVDDDLMSGDVQKKITPWSETLLDEDVSSASNLRNRKRGQLIL 1096

Query: 137  VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISN 194
            V   ++   N+G I R+   F   G +       +E       +  A + IP   ++ S 
Sbjct: 1097 VTSLIDKLPNLGGICRTCEIFGV-GQLVLASLKYAEHKDFQGLSVTAEKWIPLREVKASA 1155

Query: 195  LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L D L ++   G+  IG+   +    L Q    DK  L+LG E +G+  +  +       
Sbjct: 1156 LKDYLLEVRKEGYTLIGVEQTANSHCLTQYQFTDKTLLLLGNEREGIPVELIQLLDMCVE 1215

Query: 254  LHMPGIIKALNVSNAAAVALY 274
            +   G+I++LNV  + A+ ++
Sbjct: 1216 IPQLGVIRSLNVHVSGALLVW 1236


>gi|25029159|ref|NP_739213.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|259505846|ref|ZP_05748748.1| TrmH family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
 gi|23494447|dbj|BAC19413.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|259166520|gb|EEW51074.1| TrmH family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 230

 Score = 39.3 bits (90), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +DA R+   + + +  ND  NIG ++R+A AF+ D +    R   +    +       LE
Sbjct: 74  IDARRHPLHVAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLE 132

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           H P +  S L  AL+         + + ++    PLE     ++  L+ G EG G+  + 
Sbjct: 133 HHPDVH-SLLVWALRN----DLTVVAIDNTPGSVPLETAQLPERCLLLFGQEGPGVTDEA 187

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  A     +   G  +++N   AA +A++
Sbjct: 188 RAGALMTCSIAQFGSTRSINAGVAAGIAMH 217


>gi|256845158|ref|ZP_05550616.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294785543|ref|ZP_06750831.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
 gi|256718717|gb|EEU32272.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294487257|gb|EFG34619.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
          Length = 258

 Score = 39.3 bits (90), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIRI 192
           L++LD V+DP N+G I+R   A +   II TK    + +  + ++  G++ ++   Y+  
Sbjct: 110 LVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK 169

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSM 251
           S + + L++ +   +  I    D       +IK  +K  +I G EG G+           
Sbjct: 170 SEIINFLKENN---YSIISTYLDKTAIPYNKIKLKEKNVIIFGNEGNGISDDFINITDYK 226

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + +    ++LNV+ A  + LY
Sbjct: 227 TIIPILSNTESLNVAVATGIILY 249


>gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
 gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
          Length = 243

 Score = 39.3 bits (90), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 31/160 (19%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-----AVLAKSASGALEHIPY 189
           ++VL     P N+GA+ R+   F    +   K   P  S     +V A+   G  EH P 
Sbjct: 7   IVVLVEPRQPGNVGAVCRAMANFGVAQLRLVKSCDPFHSDAVKFSVGARPLLGQAEHFP- 65

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK------PLEQEIK-------NDKIALILGAE 236
               +L  AL  +H     ++ L+  + +      PLE+  +         ++A + G E
Sbjct: 66  ----DLAAALADVH----HSVALTRRTGRLRGNLLPLEELSQRFQSVAAQSRVAFVFGRE 117

Query: 237 GKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALY 274
            +GL   TQE A  +  A +       +LN++ A  V LY
Sbjct: 118 DRGL--TTQEVALCSQAATIETTDETGSLNLAQAVVVTLY 155


>gi|296004590|ref|XP_001351812.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|225631701|emb|CAD51619.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 351

 Score = 39.3 bits (90), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 18/180 (10%)

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           V ++  +  +A+   P LS   + + N + L+VLD +   +N+G IL  A +F+ D +  
Sbjct: 173 VRRQDKNDAVAIIKIPCLS---NKINNIKFLLVLDRIRYAYNLGKILNVAYSFNIDCLYY 229

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGFQTIGLSSDS--K 217
           TK  +   +  + +   G   +IP+I   N  +  Q     K+      T G + D+  K
Sbjct: 230 TKHTADPYNPKVMEITKGTHLNIPHI-FGNYQELEQLCKEHKLIPIVAHTKGQNIDTFFK 288

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH---LHMPGIIKALNVSNAAAVALY 274
           K   +    + I LILG+E  G  P T       AH   L M  +  +LNV  AA++ ++
Sbjct: 289 KNKIKNNNINGICLILGSESTG--PHTD--VFKYAHPIQLPMHEMTNSLNVFVAASILIH 344


>gi|296200974|ref|XP_002747842.1| PREDICTED: RNA methyltransferase-like protein 1 [Callithrix
           jacchus]
          Length = 429

 Score = 39.3 bits (90), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           LL++ D++ DP N+G ILRSA    C  ++ TK
Sbjct: 210 LLLICDNLRDPGNLGTILRSAAGAGCSKVLLTK 242


>gi|288802421|ref|ZP_06407860.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18]
 gi|288334949|gb|EFC73385.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18]
          Length = 240

 Score = 39.3 bits (90), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188
           ++QL++ LD V DP N+G I+R A  F  + I  +   +   +  + ++  G++  +   
Sbjct: 91  DNQLVLDLDGVQDPGNLGTIIRIADWFGIENIFCSHETADCWNPKVVQATMGSIARVKLH 150

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           Y+ ++ L D L       +       D      QE+ +  + +++G EGKG+
Sbjct: 151 YLNLNELIDHL----PIDYPIYATLLDGNNIYSQELSHHGM-IVMGNEGKGI 197


>gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 261

 Score = 39.3 bits (90), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 80/192 (41%), Gaps = 13/192 (6%)

Query: 93  VKTVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           V TV  + +  +  KE  H QG+        +P  D V      + L  V DP N+G IL
Sbjct: 76  VLTVSAEVLGSLASKE--HPQGIIGVGRARYTPLADLVAGVNGWVALVDVADPGNLGTIL 133

Query: 152 RSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           R+A      G+I    T   + P+      +++ GAL      R +   + L    +   
Sbjct: 134 RTADGAGFSGVILIGSTVDPFDPAA----VRASMGALFSQQIAR-AGWDELLAWRQARSL 188

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             IG S               + L+LG+E +GL  +      ++  + M G   +LN++ 
Sbjct: 189 PVIGSSDRGTVDYRTATYPRPLILVLGSERQGLSDEQLAACDTVVRIPMRGRSDSLNLAV 248

Query: 268 AAAVALY-ITQN 278
           AA + +Y IT++
Sbjct: 249 AAGILMYEITRD 260


>gi|189425147|ref|YP_001952324.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
 gi|189421406|gb|ACD95804.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
          Length = 154

 Score = 39.3 bits (90), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A +    +  K     +   L ++     + +   R  NL
Sbjct: 6   IVLIEPEIPPNTGNIARLCAATAATLHLVGKLGFSIDDRYLKRAGLDYWDKVDLKRWENL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK----TQETATSM 251
            + LQ+ H  G      +  ++   EQ I      L+ G E  GL  +     QE   ++
Sbjct: 66  -EQLQQQHPEGRFWYLSTKVARNCYEQGIYQPGDFLVFGKETAGLPAELLLANQERCLTI 124

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
               MPG +++LN+SNAAAV LY
Sbjct: 125 P---MPGQVRSLNLSNAAAVVLY 144


>gi|71654093|ref|XP_815672.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880745|gb|EAN93821.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1735

 Score = 39.3 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 122  LSPTLDAVRNSQLLMVLDHV-NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-- 178
            L P        Q L+VL  +  +P N+  + R      C  I T ++   S+ AV A   
Sbjct: 1569 LHPRALKQEKRQPLIVLSSLLQNPVNVAGLFR------CGEIFTVEKVVVSDQAVFAHPH 1622

Query: 179  ---SASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
               +A  A   +P+  +   NL + L  +   G+  IG+   +        +  ++ A++
Sbjct: 1623 FVAAARSAELWMPWEAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSMASYRFPERAAIL 1682

Query: 233  LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
            LGAEG G+  +          +   G+I++LNV    A+ +Y  T+ H 
Sbjct: 1683 LGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHL 1731


>gi|322797134|gb|EFZ19388.1| hypothetical protein SINV_11142 [Solenopsis invicta]
          Length = 430

 Score = 39.3 bits (90), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P  DA+    L ++ D++ +P N+G+ILR+A A  C+ ++  K         + +SA+GA
Sbjct: 192 PANDAI---PLTIICDNIREPGNLGSILRAAAAVGCEKLLLMKGCVDLWEPKVVRSATGA 248

Query: 184 LEHIPYI 190
              +P +
Sbjct: 249 HFRLPIV 255


>gi|167647056|ref|YP_001684719.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349486|gb|ABZ72221.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 262

 Score = 39.3 bits (90), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + +  V DP N+G ++R+A A  C G+I         S    ++  G++  +   + S +
Sbjct: 121 VAMQAVRDPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAKAS-V 179

Query: 196 TDALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQ 245
            + L    +W    IG          S+D  KP          +LIL G E +GL P+  
Sbjct: 180 QEFLAWRETWPGSVIGTLLTATVDHKSADYVKP----------SLILMGNEQQGLPPELA 229

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   + M G   +LN+S A  + +Y
Sbjct: 230 AACDVNVKIPMRGRADSLNLSVATGIMIY 258


>gi|1199536|emb|CAA64900.1| ORF 2310 [Saccharomyces cerevisiae]
 gi|1903285|emb|CAA98679.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 482

 Score = 39.3 bits (90), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182
           D V  S+L++V   V+ P N+G I R      CD    G++T +             A  
Sbjct: 325 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 379

Query: 183 ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238
           A   +P   + +  +   +++    G+  IGL  +D    L+   +  K +LIL G E  
Sbjct: 380 ADRWMPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAF 439

Query: 239 GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274
           G+ P T  +   +   +   G+I+++N+  A AV ++
Sbjct: 440 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 475


>gi|67923985|ref|ZP_00517438.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67854160|gb|EAM49466.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 216

 Score = 39.3 bits (90), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 27/161 (16%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-------ITTKRYSPSESAVLAKSASG 182
           R   L ++ + V+ PHN+ AI+R+     CD +       I T    P+ S V   S   
Sbjct: 18  RQPDLTVLTEDVHKPHNLSAIIRT-----CDAVGILDVHSINTTDEFPTFSQVSQGSDKW 72

Query: 183 ALEHI-PYIR--ISNLTDALQKMHSWGFQTIGLSS---DSKKPLEQEIKNDKIALILGAE 236
              H  P I+  I+ L      +++  F    L     D  +P          A++LGAE
Sbjct: 73  TFLHTHPDIKTAITYLKSKKINIYAAHFTEKSLDYRDIDYTQP---------TAILLGAE 123

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             G+  +          + M G++++LNVS AAAV L+  Q
Sbjct: 124 KWGVSEEAANLVDGNIIIPMLGMVQSLNVSVAAAVILFEAQ 164


>gi|120435137|ref|YP_860823.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117577287|emb|CAL65756.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 273

 Score = 39.3 bits (90), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPY 189
           L++V +    P NIGAILR+A A + D +I     T  Y+P+    + +S+ G+L     
Sbjct: 121 LILVAEAPEKPGNIGAILRTADAAAVDAVIIANPKTDLYNPN----IIRSSVGSL-FTNK 175

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I     ++ +Q + +        +  + KP       +  A+I+G E  GL  +  E +T
Sbjct: 176 IATGTTSEIIQFLQAQKIHIYAAALQASKPYSDINFKEASAIIMGTEATGLSNEWLENST 235

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + M G I ++NVS AA + ++
Sbjct: 236 QNIIIPMHGKIDSMNVSVAAGILIF 260


>gi|7507813|pir||T28895 hypothetical protein T14B4.1 - Caenorhabditis elegans
          Length = 1203

 Score = 39.3 bits (90), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRI 192
            L++V   V+ P+N+G I R++  F  D ++        ++   A S S    + I  ++ 
Sbjct: 1050 LIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDANFKALSMSSENWQKIEGVKR 1109

Query: 193  SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSM 251
            +NL   LQ + + G+  I     +   +  +    K A+I +G E +G+           
Sbjct: 1110 TNLLPYLQNLRANGYTVIAAEQTTDSVMMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQT 1169

Query: 252  AHLHMPGIIKALNVSNAAA--VALYITQNHFAK 282
              +   G  ++LNV   AA  +A +  Q  F K
Sbjct: 1170 VEIKQVGHTRSLNVHVTAALMIAKFAEQVRFDK 1202


>gi|313886769|ref|ZP_07820476.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923810|gb|EFR34612.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 262

 Score = 39.3 bits (90), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 20/186 (10%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----MVLDHVNDPHNIGAILRS 153
           P+ I+++ G ++    LAL   P       AV   Q L    ++LD V DP N+G +LR+
Sbjct: 82  PKQIERVSGLKSPRPLLALCEIP-------AVEAPQALQQPTLLLDDVQDPGNVGTLLRT 134

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
                   ++ T+  +   +  + ++  GAL  +   R ++    L  +       IG  
Sbjct: 135 CDWMGIRQVLCTEGCADVYAPKVLQATMGALARVQVYRYTDRAALLTMLKKTEIPVIGTF 194

Query: 214 SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALNVSN 267
            D   PL   +        L+LG EG G+   +  +A     + +P  +    ++LNV+ 
Sbjct: 195 IDG-APLRTLRLAPEQPYILVLGNEGNGI--SSDLSALVSQRITIPSPVDNHCESLNVAV 251

Query: 268 AAAVAL 273
           A A+ +
Sbjct: 252 AGAIVM 257


>gi|194397115|ref|YP_002038555.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
 gi|194356782|gb|ACF55230.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
          Length = 86

 Score = 39.3 bits (90), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA +  +
Sbjct: 36  ENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAAGILXF 83


>gi|315654256|ref|ZP_07907164.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
 gi|315491291|gb|EFU80908.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
          Length = 230

 Score = 39.3 bits (90), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 14/146 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + +++V    N G+I+R+A       +    R   +    +       L H P +   
Sbjct: 81  LEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRRRFNRRGAMVTDRYLHLHHHPEV--- 137

Query: 194 NLTDALQKMHSWGFQ----TIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                 Q + S+  Q     +G+ +    +PLE      +  ++ G E +GL P  Q   
Sbjct: 138 ------QDLVSYAVQQELTIVGMDNFPGAEPLETVTLPSRTLMVFGEESQGLTPAMQNAL 191

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
             +  +   G  ++LNV +AAA+ ++
Sbjct: 192 ERLVQITQYGSTRSLNVGHAAAIGIW 217


>gi|242022188|ref|XP_002431523.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis]
 gi|212516817|gb|EEB18785.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis]
          Length = 1475

 Score = 39.3 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAF-SCDGIITTKRYSPSES-AVLAKSASGALEHIPYIR 191
            L++V   ++   N+G + R+   F + + ++ + +Y   +  A L+ +A   + +I  +R
Sbjct: 1329 LIVVASLIDRVPNLGGLARTCEIFGTFEYVLGSLKYVEDKQFASLSVTAEKWI-NIKEVR 1387

Query: 192  ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              NL + L KM   G++ IG       KPL +     K  L+LG E +G+ P        
Sbjct: 1388 PENLLNYLLKMKDDGYKVIGAEQALYSKPLNEVKFPKKSLLLLGNEKEGIPPNLLPLLDI 1447

Query: 251  MAHLHMPGIIKALNVSNAAAVALY 274
               +   GII++LNV     V L+
Sbjct: 1448 CVEIPQVGIIRSLNVHVTGDVMLF 1471


>gi|224097422|ref|XP_002334612.1| predicted protein [Populus trichocarpa]
 gi|222873484|gb|EEF10615.1| predicted protein [Populus trichocarpa]
          Length = 206

 Score = 39.3 bits (90), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-P 219
           G++   + S   S V++K+++G+LE +      N    L      G++ +G S  SK  P
Sbjct: 69  GVLLCAKNSALLSGVVSKASAGSLELMELRCCKNRMQFLASSAENGWRVLGGSVSSKAVP 128

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALY 274
           L + +      L+LG+EG G   + +E     S A       +++LNVS AA V L+
Sbjct: 129 LNEVLPGQPTILVLGSEGTGDEVEGEEINLERSSAEFGSFLAVESLNVSVAAGVLLH 185


>gi|163754275|ref|ZP_02161398.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
 gi|161326489|gb|EDP97815.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
          Length = 242

 Score = 39.3 bits (90), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 9/151 (5%)

Query: 127 DAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +AV N++ L++ LD V DP N+G I+R    F    ++ ++      +  + ++  G+L 
Sbjct: 89  NAVVNAEGLIVALDDVRDPGNLGTIIRLCDWFGVTQLVCSEATVDCYNPKVIQATMGSLT 148

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +  +  +NL + L +         G   D K   +  +  D I L++G E  G+  K  
Sbjct: 149 RVNVVY-ANLENYLSETK---LPVFGAFMDGKNVYKTNLPKDGI-LVMGNEANGVSEKIS 203

Query: 246 ETATSMAHLHMPGIIK---ALNVSNAAAVAL 273
              T    +   G I+   +LNV+ A  + L
Sbjct: 204 TLITEKIAIPRFGEIQQTESLNVAMATGILL 234


>gi|6320091|ref|NP_010171.1| Trm3p [Saccharomyces cerevisiae S288c]
 gi|74627230|sp|Q07527|TRM3_YEAST RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM3; AltName:
            Full=tRNA [Gm18] methyltransferase; AltName: Full=tRNA
            methylase 3
 gi|1431162|emb|CAA98680.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285810924|tpg|DAA11748.1| TPA: Trm3p [Saccharomyces cerevisiae S288c]
          Length = 1436

 Score = 39.3 bits (90), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182
            D V  S+L++V   V+ P N+G I R      CD    G++T +             A  
Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 1333

Query: 183  ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238
            A   +P   + +  +   +++    G+  IGL  +D    L+   +  K +LIL G E  
Sbjct: 1334 ADRWMPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAF 1393

Query: 239  GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274
            G+ P T  +   +   +   G+I+++N+  A AV ++
Sbjct: 1394 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429


>gi|195941791|ref|ZP_03087173.1| spoU protein (spoU) [Borrelia burgdorferi 80a]
          Length = 218

 Score = 39.3 bits (90), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           + R + L  VL+ +    N  A +R+        +   ++   ++  +      G+ + I
Sbjct: 29  SFRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  GAE  GL  +   
Sbjct: 87  NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGAELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     + M G  ++ N+S A A+ +Y
Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMY 174


>gi|260460492|ref|ZP_05808743.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259033597|gb|EEW34857.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 285

 Score = 39.3 bits (90), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 10/149 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  + + LD V DP N+G ++R+  A    GII     +   S    ++  G++  +P  
Sbjct: 126 NGDVWVALDRVRDPGNLGTVIRTVDAVGAKGIILVGDTTDPFSVETVRATMGSIFAVPIA 185

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS--KKPLEQ---EIKNDKIALILGAEGKGLRPKTQ 245
           + +      +   +W     GL + +  K  ++    +     + L++G E +GL     
Sbjct: 186 KATT-----EAFLAWRGAFSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLA 240

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +  +   G   +LN++ A  + L+
Sbjct: 241 ASCDRLLRIPQAGRADSLNLAVATGIMLF 269


>gi|163756791|ref|ZP_02163900.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
 gi|161323180|gb|EDP94520.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
          Length = 268

 Score = 38.9 bits (89), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 13/147 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGAL--EHI 187
           L++V +    P NIGA+LR+A A + D +      T  Y+P+    + +S+ G +    I
Sbjct: 120 LILVAEAPEKPGNIGALLRTADAANIDAVFIANPKTDLYNPN----IVRSSVGCVFTTQI 175

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                + +   LQ+          L++     L+   K    A+++G E  GL  +    
Sbjct: 176 AMGSTAEIISFLQE-KDIAIYCAALTASEHYHLQNYQK--ATAIVVGTEATGLSDEWLNN 232

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +T    + M G I ++NVS AAA+ ++
Sbjct: 233 STQNIIIPMQGKIDSMNVSVAAAIVIF 259


>gi|312129342|ref|YP_003996682.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM
           17132]
 gi|311905888|gb|ADQ16329.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM
           17132]
          Length = 241

 Score = 38.9 bits (89), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 39/156 (25%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP-- 188
           +++LD + DP N+G I+R A  +  + +I    T + Y+P     +  S  G+   +   
Sbjct: 101 ILILDGLRDPGNLGTIIRLADWYGIEHLICSEDTVEFYNPK----VISSTMGSFTRVKPY 156

Query: 189 YIRISNLTDAL-----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           Y+ I +  +             Q +H W F                 KN  +AL++G+E 
Sbjct: 157 YLDIHSFMEKYPHPILGADLEGQNVHKWDFP----------------KN--MALVIGSES 198

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G+  +T+   T   ++   G  ++LN + A  + L
Sbjct: 199 HGISAETERQLTDKVNIPRIGKAESLNAAMATGIIL 234


>gi|317123375|ref|YP_004097487.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315587463|gb|ADU46760.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 288

 Score = 38.9 bits (89), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL S T+D    S L +V   +  P N+GA+LR+A A   D ++     +   +  + ++
Sbjct: 121 PLASLTVDG--PSWLGLVAQRIEKPGNLGAMLRTADAAGVDAVVAADPVTDWGNPNVVRA 178

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGK 238
           + G L  +P    S  T       + G  T+ +++     L  E+    ++A+ +G+E  
Sbjct: 179 SKGTLFAVPVA--SGTTSETLAWLAHGAVTLVVTTPETDLLHTEVDYTGRVAIAVGSEKH 236

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+       AT    + M G   +LNVS AAAV LY
Sbjct: 237 GVDDALLVAATHRVRIPMHGRANSLNVSVAAAVVLY 272


>gi|300772566|ref|ZP_07082436.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760869|gb|EFK57695.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 249

 Score = 38.9 bits (89), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 17/155 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHI 187
           +Q  +VLD V DP N+G I+R+A  F    I+    T   Y+P    V A   S +   I
Sbjct: 104 NQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNP--KVVQATMGSLSRTQI 161

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            Y      TD    + +      G   D     E     + + +++G EG G+  K  + 
Sbjct: 162 HY------TDLESFIRTVRLPVFGALLDGTSIYETRWGKEGL-ILMGNEGNGISEKLLDL 214

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 +   G  ++LNV    AVA  I  N  A+
Sbjct: 215 IDHAVTIPRTGQAESLNV----AVATTIFCNEIAR 245


>gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 274

 Score = 38.9 bits (89), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 126/280 (45%), Gaps = 30/280 (10%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
           F L  S    L +  R+ +   S  QKSR  S      L G+H V   + +P+ K   LL
Sbjct: 3   FDLITSKENPLFKEIRNLQATGSKGQKSRMASG--QALLEGIHLVQTWVGDPALK--TLL 58

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRN 131
            ++  L  L+    +     +   P   + ++ G  A+   L+ L +AP ++  LD  ++
Sbjct: 59  TSEVGLKNLEISQAVYEHLEI--CPSTKVFQLDG--ALWDLLSDLVSAPHIAGLLDLPKS 114

Query: 132 SQL-----------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +             +++L  V D  N+G+ILR+A A      I     +   S  + ++ 
Sbjct: 115 TLTTPQSIATLDGDVVILARVQDAGNVGSILRTAAAAGFTQAIALTGCAHLWSTKVLRAG 174

Query: 181 SGALEHIP-YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAE 236
            GA + +  Y   SN     Q + +     +  ++D+++ L   +K D    +A ++G+E
Sbjct: 175 MGAHKLLDLYEGWSN----QQVLSAITAPLLAATADAEQDL-YSLKKDLLHPVAWVMGSE 229

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+G+       A  ++ + +   +++LNVS AAA+ L+ T
Sbjct: 230 GQGISEDLLAQAKGVS-IPIDPRVESLNVSTAAAICLFET 268


>gi|227537933|ref|ZP_03967982.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242235|gb|EEI92250.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 249

 Score = 38.9 bits (89), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 17/155 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHI 187
           +Q  +VLD V DP N+G I+R+A  F    I+    T   Y+P    V A   S +   I
Sbjct: 104 NQFTLVLDDVQDPGNLGTIIRTAEWFGFKHIVCSAGTVDAYNP--KVVQATMGSLSRTQI 161

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            Y      TD    + +      G   D     E     + + +++G EG G+  K  + 
Sbjct: 162 HY------TDLESFIRTVRLPVFGALLDGTSIYETRWGKEGL-ILMGNEGNGISEKLLDL 214

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 +   G  ++LNV    AVA  I  N  A+
Sbjct: 215 IDHAVTIPRTGQAESLNV----AVATTIFCNEIAR 245


>gi|300859281|ref|YP_003784264.1| hypothetical protein cpfrc_01864 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686735|gb|ADK29657.1| hypothetical protein cpfrc_01864 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206969|gb|ADL11311.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331529|gb|ADL21723.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277220|gb|ADO27119.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 223

 Score = 38.9 bits (89), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P +   +D  R++  + + +  ND  NIG ++R+A AF+ D +    R   +    +   
Sbjct: 61  PAIIKDIDTRRHALHVAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTD 119

Query: 180 ASGALEHIPYIRISNLTD-ALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEG 237
               L H P     +L D AL +    G   + + ++    PLE     +K  L+ G EG
Sbjct: 120 RYQHLMHHP--DTQSLVDWALSE----GLTIVAIDNTPGCIPLETAELPEKCILLFGQEG 173

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+    Q+ A     +   G  +++N   AA +A++
Sbjct: 174 PGVTQAAQKGALMTCSIAQFGSTRSINAGVAAGIAMH 210


>gi|254444144|ref|ZP_05057620.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198258452|gb|EDY82760.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 241

 Score = 38.9 bits (89), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 18/158 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGII---TTKRYSPSESAVLAKSASGALEHIPYIR 191
           +++LD V+   N+G I R++  F  +  +   T K+  P E A   + A G L+ +    
Sbjct: 89  MLILDGVSSVANLGGIARTSAYFGVEKFLIAATRKQARPCEEAY--REARGGLDMVDLRL 146

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPL--------EQEIKNDKIALILGAEGKGLRPK 243
           + N+   L+      F  IGL  +   PL        E E++   +A+++G E  GL   
Sbjct: 147 VDNVPSFLKGARKTHF-VIGLDIEG-PPLPELMGICPEDELEK-PVAIVIGNEETGLHES 203

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           +++  + +  +   G I  L+V    A+ L  Y+ + +
Sbjct: 204 SKQECSVLVGIPGSGAIDRLSVVAETALLLQKYVVEAY 241


>gi|260174886|ref|ZP_05761298.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|315923129|ref|ZP_07919369.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697004|gb|EFS33839.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 254

 Score = 38.9 bits (89), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            Q LA+   P  +   + V  S L + LD V DP N+G I+R A  F  + II ++    
Sbjct: 83  QQVLAIFEQPSYTVNPEVVHQS-LCLALDDVQDPGNLGTIIRLADWFGIEHIICSQNTVD 141

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G +  +  +  ++L D ++ +        G   D K   EQ +  + + 
Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGD--TPIFGTFLDGKNMYEQPLSANGL- 197

Query: 231 LILGAEGKGLRPKTQETATSMAH-LHMPG------IIKALNVSNAAAV 271
           +++G EG G+    +E AT +   L++P         ++LNV+ A AV
Sbjct: 198 IVMGNEGNGI---GKEVATLINRKLYIPNYPEGQETSESLNVAIATAV 242


>gi|193204953|ref|NP_495375.3| hypothetical protein T14B4.1 [Caenorhabditis elegans]
 gi|169404471|gb|AAK31550.3| Hypothetical protein T14B4.1 [Caenorhabditis elegans]
          Length = 1225

 Score = 38.9 bits (89), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRI 192
            L++V   V+ P+N+G I R++  F  D ++        ++   A S S    + I  ++ 
Sbjct: 1072 LIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDANFKALSMSSENWQKIEGVKR 1131

Query: 193  SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSM 251
            +NL   LQ + + G+  I     +   +  +    K A+I +G E +G+           
Sbjct: 1132 TNLLPYLQNLRANGYTVIAAEQTTDSVMMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQT 1191

Query: 252  AHLHMPGIIKALNVSNAAA--VALYITQNHFAK 282
              +   G  ++LNV   AA  +A +  Q  F K
Sbjct: 1192 VEIKQVGHTRSLNVHVTAALMIAKFAEQVRFDK 1224


>gi|153824637|ref|ZP_01977304.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|153828259|ref|ZP_01980926.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|148876213|gb|EDL74348.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|149741855|gb|EDM55884.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 257

 Score = 38.9 bits (89), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S       +   K + I L++G+
Sbjct: 158 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 211

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 212 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249


>gi|301167940|emb|CBW27526.1| tRNA (guanosine-2'-O-)-methyltransferase [Bacteriovorax marinus SJ]
          Length = 249

 Score = 38.9 bits (89), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 4/165 (2%)

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           V   L  +   L+   LD  R S L ++L+ + D  N+ AI R+   F    +   +   
Sbjct: 38  VEDSLNDQRKELIERILDQ-RISGLSVILESLGDLGNLQAISRTCDNFGVQKLEIIETKG 96

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
           P +     +++ GA + +   +     D LQ     G Q +  + SD   P  +      
Sbjct: 97  PMKWT--NRTSQGAHKWVTMQKWYETKDCLQYFKDRGVQIVSTAFSDKAIPYTEVDFTKP 154

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL++G E  G+    +E +     +   G  ++LNVS AAA+ +
Sbjct: 155 TALLMGNESFGISEVAREMSDVECIIPSYGYSQSLNVSVAAAIVI 199


>gi|62859047|ref|NP_001016220.1| RNA methyltransferase-like protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 415

 Score = 38.9 bits (89), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           PT        L ++ D++ DP N+G ILR A    C+ ++ TK    +    + ++  GA
Sbjct: 195 PTTQTKHTLPLSLICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGA 254

Query: 184 LEHIPYI 190
              +P I
Sbjct: 255 HFRLPVI 261


>gi|153800597|ref|ZP_01955183.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|124123886|gb|EAY42629.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
          Length = 257

 Score = 38.9 bits (89), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S      + Q     +  L++G+
Sbjct: 158 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 211

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 212 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249


>gi|15640821|ref|NP_230452.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585767|ref|ZP_01675562.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121725984|ref|ZP_01679283.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147674554|ref|YP_001216286.1| RNA methyltransferase [Vibrio cholerae O395]
 gi|153817294|ref|ZP_01969961.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|153821410|ref|ZP_01974077.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|227080982|ref|YP_002809533.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|254847940|ref|ZP_05237290.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|297581202|ref|ZP_06943126.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|298499065|ref|ZP_07008872.1| RNA methyltransferase [Vibrio cholerae MAK 757]
 gi|9655252|gb|AAF93967.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121550130|gb|EAX60146.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121631466|gb|EAX63836.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|126512210|gb|EAZ74804.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126521120|gb|EAZ78343.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|146316437|gb|ABQ20976.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|227008870|gb|ACP05082.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|227012627|gb|ACP08837.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|254843645|gb|EET22059.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|297534518|gb|EFH73355.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|297543398|gb|EFH79448.1| RNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 257

 Score = 38.9 bits (89), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S      + Q     +  L++G+
Sbjct: 158 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 211

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 212 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249


>gi|300775607|ref|ZP_07085468.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300505634|gb|EFK36771.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 226

 Score = 38.9 bits (89), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 11/146 (7%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT-TKRYSPSESAVLAKSASGALEHIPYIR- 191
           +L V++ V    N  AI+RS  A     ++   + YS   +  + K A   +E     R 
Sbjct: 36  VLPVVEDVYQFRNAAAIVRSVEACGFHKVVALQEEYSFEPNLRVTKGADTWVEVEKLPRN 95

Query: 192 ---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                N+ D   K+ +     + L  ++K   E E+  + IAL+ G E +G+  +  + A
Sbjct: 96  MESFQNIKDRRYKIVA-----VSLEKNAKMLPEYEV-TEPIALVFGTEMEGVSQEILDFA 149

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M G  ++ NVS AA++ +Y
Sbjct: 150 DETLAIPMYGFTRSFNVSVAASICMY 175


>gi|297624314|ref|YP_003705748.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
           17093]
 gi|297165494|gb|ADI15205.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
           17093]
          Length = 221

 Score = 38.9 bits (89), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 11/154 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187
           R   L ++ ++V+ PHN+ A+LR+     CD  GI      +P+         S +    
Sbjct: 17  RQRDLSVLAENVHKPHNLSAMLRT-----CDAVGIGVVHALNPTGGVPTFNETSASAHKW 71

Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQ 245
             +R+  +L +A   +   G Q +      +    +E+   +   +L G E  G+  +  
Sbjct: 72  VELRVHGSLAEARAALG--GVQLLAAHFSGRALDYREVDYTRPTCVLFGNEKHGVSREAA 129

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + A +   + M G++++LNVS AAAV L+  Q  
Sbjct: 130 DAADAHIVIPMLGMVQSLNVSVAAAVILFEAQRQ 163


>gi|190348050|gb|EDK40436.2| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1409

 Score = 38.9 bits (89), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 21/163 (12%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGA 183
            AV+ S L++V   V+   N+G I R      CD    G++T        S      A  A
Sbjct: 1253 AVKRSDLIVVSSLVDKAPNLGGICRL-----CDVLGAGLLTLADIRVKNSPHFKNVAVTA 1307

Query: 184  -----LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAE 236
                 +E +P  +I N    +QK  S G+  +GL  +D    L  E+K   K  ++LG E
Sbjct: 1308 DRWMPMEEVPVDQIKNYM--VQK-KSEGYTLVGLEQTDKSLELNSELKFPKKTLMLLGRE 1364

Query: 237  GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277
             +G+             +   G+I+++N+  A AV +  Y TQ
Sbjct: 1365 KEGIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQ 1407


>gi|148242334|ref|YP_001227491.1| rRNA methylase [Synechococcus sp. RCC307]
 gi|147850644|emb|CAK28138.1| Predicted rRNA methylase [Synechococcus sp. RCC307]
          Length = 152

 Score = 38.9 bits (89), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           H+P ++ S+  + L+       + +G S   S+  LE + + D   LI G E KGL P+ 
Sbjct: 54  HVPLVQHSSWGEFLKHHQHHSGRLLGFSRHASRSYLEIDYRADD-WLIFGCETKGLAPEV 112

Query: 245 QETATSMAHLHMP-GIIKALNVSNAAAVALY 274
           Q     +  + M    +++LN+S AAAV L+
Sbjct: 113 QANCDDLLLIPMTCSAVRSLNLSVAAAVVLF 143


>gi|76643639|ref|XP_582975.2| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
          Length = 449

 Score = 38.9 bits (89), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266


>gi|255264534|ref|ZP_05343876.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
 gi|255106869|gb|EET49543.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
          Length = 157

 Score = 38.9 bits (89), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIR 191
           +L MVL     P+N GAI RS VA   + +I  K Y  S +   + ++ +   +H+    
Sbjct: 5   RLKMVLVTPEIPYNTGAIGRSCVALGLE-LILIKPYGFSLDEKSVRRAGTDYWKHVDLSE 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  D L+       Q      D  +       +    L+ G E  GL P +       
Sbjct: 64  YDSWADFLETRQPPRDQMYFFEEDGAQSFYAPEYHPDGYLVFGCESAGL-PASVLDGMED 122

Query: 252 AHLHMPGI---IKALNVSNAAAVALY 274
              H+P +   +++LN++N A  A+Y
Sbjct: 123 RMFHLPMLDTRVRSLNLANVATAAIY 148


>gi|163839504|ref|YP_001623909.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162952980|gb|ABY22495.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 300

 Score = 38.9 bits (89), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 26/166 (15%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIP 188
           QL+ +L  V DP N G +LR+A A   D +I    +   Y+P       +S  G+L H+P
Sbjct: 132 QLIAMLCRVQDPGNAGTVLRAADAAGADAVIFSNSSVDVYNPKA----VRSTVGSLFHLP 187

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS------------DSKKPLEQEIKNDKIAL----- 231
            +  ++  +  ++    G   +                 + +  +QE       L     
Sbjct: 188 VVLGADPAEVARQCRIAGIGVLAADGYGALNLDQLQDESAARSFDQETPESAYPLEQPTL 247

Query: 232 -ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              G E +GL  +  E A     + + G  ++LNV  AA V LY +
Sbjct: 248 WFFGNEAQGLSTEELEAADHRVAVPVHGSAESLNVGTAATVCLYAS 293


>gi|332519939|ref|ZP_08396403.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044498|gb|EGI80692.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 176

 Score = 38.9 bits (89), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++VLD++   +NIG++ R++ AF  + I      +      + K+A G+ + + +    
Sbjct: 25  IIIVLDNIRSLNNIGSVFRTSDAFLVEKIYLCGITATPPHKDINKTALGSTDAVSWEYAK 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATS 250
              + ++K+     +   +       +  +    KN   AL+ G E KG+       + S
Sbjct: 85  TTMEVIEKLKIKDVKICSIEQAENATMLNDFTVEKNTTYALVFGNEVKGVDQNIVNASDS 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G   +LN+S +  V ++
Sbjct: 145 VIEIPQFGTKHSLNISVSCGVVVW 168


>gi|304390649|ref|ZP_07372602.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326405|gb|EFL93650.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 230

 Score = 38.9 bits (89), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 4/141 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + +++V    N G+I+R+A       +    R   +    +       L H P ++  
Sbjct: 81  LEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRRRFNRRGAMVTDRYLHLHHHPEVQDL 140

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
               A Q++   G           +PLE      +  ++ G E +GL P  Q     +  
Sbjct: 141 VSYAAQQELTIVGMDNF----PGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALERLVQ 196

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           +   G  ++LNV +AAA++++
Sbjct: 197 ITQYGSTRSLNVGHAAAISIW 217


>gi|218768195|ref|YP_002342707.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
 gi|121052203|emb|CAM08526.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
 gi|316985032|gb|EFV63985.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76]
 gi|325134334|gb|EGC56980.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M13399]
 gi|325140360|gb|EGC62882.1| RNA methyltransferase, TrmH family [Neisseria meningitidis CU385]
 gi|325144441|gb|EGC66741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240013]
 gi|325200182|gb|ADY95637.1| RNA methyltransferase, TrmH family [Neisseria meningitidis H44/76]
 gi|325206036|gb|ADZ01489.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M04-240196]
          Length = 261

 Score = 38.9 bits (89), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     +I  K  + + S  + ++  GA         ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFLSEIYPQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L +     F T  L  + +  L  E   +  A + G EG G+     + A     +
Sbjct: 174 LEIWLVRYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|297486581|ref|XP_002695756.1| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
 gi|296476912|gb|DAA19027.1| RNA methyltransferase like 1 [Bos taurus]
          Length = 413

 Score = 38.9 bits (89), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 266


>gi|160358655|sp|A4QNL8|RMTL1_XENTR RecName: Full=RNA methyltransferase-like protein 1
 gi|140832729|gb|AAI35862.1| RNA methyltransferase like 1 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 38.9 bits (89), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           PT        L ++ D++ DP N+G ILR A    C+ ++ TK    +    + ++  GA
Sbjct: 195 PTTQTKHTLPLSLICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGA 254

Query: 184 LEHIPYI 190
              +P I
Sbjct: 255 HFRLPVI 261


>gi|156973799|ref|YP_001444706.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
 gi|156525393|gb|ABU70479.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
          Length = 244

 Score = 38.9 bits (89), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P +   +   L++ LD V+DP N+G I+R A  +    II +      Y+P       K+
Sbjct: 92  PNVTVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     +++S L D    +        G   + +   + E   D I L++G+E  G
Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEDANLPVYGAFLEGESVHKTEFSADGI-LLMGSESHG 202

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R    +  T    +   G  ++LNV+ A  + L
Sbjct: 203 VREAASKFVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|146415670|ref|XP_001483805.1| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1409

 Score = 38.9 bits (89), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 21/163 (12%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGA 183
            AV+ S L++V   V+   N+G I R      CD    G++T        S      A  A
Sbjct: 1253 AVKRSDLIVVSSLVDKAPNLGGICRL-----CDVLGAGLLTLADIRVKNSPHFKNVAVTA 1307

Query: 184  -----LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAE 236
                 +E +P  +I N    +QK  S G+  +GL  +D    L  E+K   K  ++LG E
Sbjct: 1308 DRWMPMEEVPVDQIKNYM--VQK-KSEGYTLVGLEQTDKSLELNSELKFPKKTLMLLGRE 1364

Query: 237  GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277
             +G+             +   G+I+++N+  A AV +  Y TQ
Sbjct: 1365 KEGIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHAYSTQ 1407


>gi|156545324|ref|XP_001605709.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 458

 Score = 38.9 bits (89), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + ++ D+V DP N+G+ILR+A     + ++ TK         + +SA+GA   +P +
Sbjct: 238 ITIICDNVRDPGNMGSILRAAAGVGVEKVVLTKGCVDFWDTKVLRSATGAHFRVPIL 294


>gi|119472552|ref|ZP_01614600.1| RNA methyltransferase, TrmH family protein [Alteromonadales
           bacterium TW-7]
 gi|119444876|gb|EAW26176.1| RNA methyltransferase, TrmH family protein [Alteromonadales
           bacterium TW-7]
          Length = 243

 Score = 38.9 bits (89), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 5/150 (3%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P  D  +   L++ LD V+DP N+G I+R A  +    I+T+   + S  A   K+ S  
Sbjct: 92  PKADLPKIKGLILALDGVSDPGNLGTIIRVADWYGIKHIVTS---TDSADAYNPKTISAT 148

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +     + +S + D    + +      G   D +   + +   + + L++G+E  G+R  
Sbjct: 149 MGSFVRVSVSQV-DLPAYLQTLKLPIYGAFLDGQSVHKTQFNGEGV-LLMGSESHGIRQA 206

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                T    +   G  ++LNV+ A  + L
Sbjct: 207 CAGLVTDKITIPAFGEAESLNVAMATGIIL 236


>gi|84385230|ref|ZP_00988262.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|84379827|gb|EAP96678.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
          Length = 244

 Score = 38.9 bits (89), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 16/207 (7%)

Query: 72  LATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           L  KN  A  D+   N    F    V     D       V    A+    +  PT +   
Sbjct: 41  LVVKNVFATADFLSENHASLFEFDCVEASLDDLTKASTLVSNNAAIAVVEI--PTFELPE 98

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEH 186
            + L++ LD V+DP N+G I+R A  +    I+ +      Y+P       K+ S  +  
Sbjct: 99  ATGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASSDCADPYNP-------KTISATMGS 151

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              + +S  TD    +        G   + +   + E   + I L++G+E  G+R    +
Sbjct: 152 FGRVHVSQ-TDLPAYLEQANLPVYGAFLEGESVHKTEFTANGI-LLMGSESHGIREHAAK 209

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
             T    +   G  ++LNV+ A  + L
Sbjct: 210 YVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|262192463|ref|ZP_06050614.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
 gi|262031622|gb|EEY50209.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
          Length = 244

 Score = 38.9 bits (89), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 92  PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S       +   K + I L++G+
Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|229530071|ref|ZP_04419461.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
 gi|229333845|gb|EEN99331.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
 gi|327483584|gb|AEA77991.1| RNA methyltransferase, TrmH family [Vibrio cholerae LMA3894-4]
          Length = 244

 Score = 38.9 bits (89), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 92  PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S       +   K + I L++G+
Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|16125439|ref|NP_420003.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221234182|ref|YP_002516618.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|13422511|gb|AAK23171.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220963354|gb|ACL94710.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 263

 Score = 38.9 bits (89), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 19/146 (13%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +  V DP N+G ++R+A A  C G+I         S    ++  G++  +   + + + +
Sbjct: 124 MQAVRDPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK-ATIPE 182

Query: 198 ALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            L    +W    +G          S+D  KP           +++G E +GL P+     
Sbjct: 183 FLAWRETWPGSVVGTLLTATVDHKSADYVKPS---------LILMGNEQQGLPPELAAAC 233

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M G   +LN+S A  + +Y
Sbjct: 234 DVNVKIPMRGRADSLNLSVATGIMIY 259


>gi|296158889|ref|ZP_06841717.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
 gi|295890764|gb|EFG70554.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
          Length = 261

 Score = 38.9 bits (89), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 112/255 (43%), Gaps = 15/255 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +  +  L G H  SA L+   +     + T  AL   +  
Sbjct: 7   RDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEM-CIVTDGALRHDEAQ 65

Query: 85  ANLP--HPFPVKTVPPQTIDKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLD 139
           A +       + T+P    D + G+    VH  G+ L    L +P  D V  +Q  +VLD
Sbjct: 66  AIVSRIEDHRLVTLP----DALFGQLSNVVHGVGILLLVEKLDTPLPDEV--AQTCLVLD 119

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V D  N+G+ILRSA A     +      + + S+ + +S  GA  H   ++I    +A 
Sbjct: 120 GVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDVEAQ 176

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +       +   S   + +     +  +A + G EG G+    ++  +    +  PG 
Sbjct: 177 ALIERLAAPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQIWRDAVSLRVTIPQPGG 236

Query: 260 IKALNVSNAAAVALY 274
           +++LNV+ AAAV ++
Sbjct: 237 MESLNVAAAAAVCVF 251


>gi|262402833|ref|ZP_06079394.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
 gi|262351615|gb|EEZ00748.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
          Length = 244

 Score = 38.9 bits (89), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 92  PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S       +   K + I L++G+
Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|161870027|ref|YP_001599196.1| RNA methyltransferase [Neisseria meningitidis 053442]
 gi|161595580|gb|ABX73240.1| RNA methyltransferase [Neisseria meningitidis 053442]
          Length = 261

 Score = 38.9 bits (89), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G +LRSA A     ++  K  + + S  + ++  GA         ++
Sbjct: 114 CVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQAD 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L       F T  L  + +  L  E   +  A + G EG G+     + A     +
Sbjct: 174 LEIWLASYKGRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRI 232

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M    ++LNV+ AA + L+
Sbjct: 233 PMHDATESLNVAMAATICLF 252


>gi|118468653|ref|YP_885145.1| spou rRNA methylase family protein [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169940|gb|ABK70836.1| spou rRNA methylase family protein [Mycobacterium smegmatis str.
           MC2 155]
          Length = 214

 Score = 38.9 bits (89), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 11/164 (6%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T P +   +D  R   L + +++     NIG ++R+A AF+ D +    R   +    + 
Sbjct: 50  TRPAIVADID-TRRHPLHIAIENFGSDANIGTVVRTANAFAVDTVHIVGRRRWNRRGAMV 108

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGA 235
                 L H          D L      G   + + +   S +  E E+  + + LI G 
Sbjct: 109 TDRYQRLRH-----HDTTADLLDFADDAGLVVVAVDNVPGSVRLEETELPRNCL-LIFGQ 162

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277
           EG G+ P+ Q  A     +   G  +++N   AA +A+  +IT+
Sbjct: 163 EGPGITPEAQAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWITR 206


>gi|332992179|gb|AEF02234.1| rRNA methylase [Alteromonas sp. SN2]
          Length = 271

 Score = 38.5 bits (88), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           ++ Q  + L  V DP N+G ILR+   F    ++ +       ++ + +S+ GA+ H+P 
Sbjct: 127 KDKQRYVYLHEVQDPGNLGTILRTLAWFDNFSLLLSPNSVDPFNSKVVRSSMGAIFHVP- 185

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I +    DALQ   S  F  + ++ ++   +     +D    + G E +G+ PK   +A 
Sbjct: 186 IELDVSLDALQTRFSR-FAYLDMAGEA---VTAPSFSDFDCYLFGNEARGV-PKAALSAF 240

Query: 250 SMAHLHMPGI--IKALNVSNAAAVALY 274
           +     + G   I +LN+++A  + +Y
Sbjct: 241 NAKAYTIAGSGKIDSLNLASAVNMCVY 267


>gi|302848076|ref|XP_002955571.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f.
           nagariensis]
 gi|300259194|gb|EFJ43424.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f.
           nagariensis]
          Length = 148

 Score = 38.5 bits (88), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 6/149 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V   + +  N+  + R+  +  C+ ++   R   +  A   + A  +   +P + +S
Sbjct: 1   LIVVASLLENVPNMAGLCRTCESLGCEALVLPSRAVVASEA-FKRQAVTSERWLPLVEVS 59

Query: 194 --NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +L   L+++   G+  IG+   +   PL+      +  L+LG E  G+          
Sbjct: 60  PRDLAAYLREVRGRGYLLIGVEQAAGSVPLQTFTFPQRCLLLLGNEQSGVPQHLIAMLDK 119

Query: 251 MAHLHMPGIIKALN--VSNAAAVALYITQ 277
              + M G+ ++LN  VS A AV  Y+ Q
Sbjct: 120 CVEIPMLGVTRSLNAHVSGAMAVWQYVQQ 148


>gi|260944646|ref|XP_002616621.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
 gi|238850270|gb|EEQ39734.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
          Length = 1423

 Score = 38.5 bits (88), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 15/160 (9%)

Query: 129  VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASGAL 184
            +  S L++V   V+   N+G I R      CD    G++T        +A     A  A 
Sbjct: 1268 ISRSDLIVVASLVDKAPNLGGICRL-----CDVLGAGLMTLHDLKIKNNAQFKTVAVTAD 1322

Query: 185  EHIPYIRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGKGL 240
              +P I +    + + L +  + G+  IGL  +D    L ++++  K +LIL G E +G+
Sbjct: 1323 YWMPMIEVKPHQIVEYLHQKKADGYTLIGLEQTDKSVVLNKDLQFPKKSLILLGREKEGI 1382

Query: 241  RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              +          +   GI++++N+  A AV +  Y +QN
Sbjct: 1383 PGELLAELDLCVEIKQVGIVRSMNIQTATAVIVHAYASQN 1422


>gi|332518956|ref|ZP_08395423.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044804|gb|EGI80997.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 240

 Score = 38.5 bits (88), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 15/147 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           L++ LD V DP N+G I+R    +    ++    T   Y+P    + A   S    +I Y
Sbjct: 95  LIVALDDVRDPGNLGTIIRLCDWYGITNLVCSIGTVDCYNP--KVIQATMGSITRVNISY 152

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + +S       K        +G   D +   + ++ N  I L++G E  G+    +E  T
Sbjct: 153 LNLSYFLKQNNKT-----PILGAFMDGENVYKTKLPNSGI-LVMGNEANGVSKTIEEQVT 206

Query: 250 SMAHLHMPGIIKA---LNVSNAAAVAL 273
           +   +   G ++A   LNV+ A A+ L
Sbjct: 207 NRIAIPRFGTLQATESLNVATATAILL 233


>gi|262065888|ref|ZP_06025500.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380369|gb|EFE87887.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 254

 Score = 38.5 bits (88), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 2/140 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD V DP N+G I+R   A +   II TK      +  + ++  G++ ++    +   
Sbjct: 107 VILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDVYNEKVIRATMGSILNVNLFYLEK- 165

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            + ++ +    +  I    D +  P  +    +K A+I G EG+G+  +    +     +
Sbjct: 166 QEIIKLLKENNYSVIATYLDKEALPYNKIQLKEKNAVIFGNEGRGICDEFINISDCKTII 225

Query: 255 HMPGIIKALNVSNAAAVALY 274
            +    ++LNV+ A+A+ LY
Sbjct: 226 PILSNTESLNVAVASAIILY 245


>gi|229513059|ref|ZP_04402525.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
 gi|229349952|gb|EEO14906.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
          Length = 244

 Score = 38.5 bits (88), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 92  PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S      + Q     +  L++G+
Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|198419564|ref|XP_002121605.1| PREDICTED: similar to TAR RNA binding protein 1 [Ciona intestinalis]
          Length = 1848

 Score = 38.5 bits (88), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPYIR 191
            L++V   ++ P N+G + R+   F  + +I       S+     L+ +A   L+ +  ++
Sbjct: 1690 LVLVASLIDKPSNLGGLTRTCEVFGAEQMIVHSLSCTSDKLFQSLSVTAHKWLK-MSEVK 1748

Query: 192  ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATS 250
               L + L+ M   G+  +      +     E K   K  ++LG E +G+ P      ++
Sbjct: 1749 RWELEEYLESMKRQGYALVATEQTEQSVCLTEYKFPPKCVILLGNEKEGIPPNLLRMCSA 1808

Query: 251  MAHLHMPGIIKALNVSNAAAVALY 274
               +   G++++LNV  +  + ++
Sbjct: 1809 CIEIPQVGVVRSLNVHVSGGITVW 1832


>gi|302346532|ref|YP_003814830.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
 gi|302151157|gb|ADK97418.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
          Length = 240

 Score = 38.5 bits (88), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 7/112 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-- 188
           ++QL++ LD V DP N+G I+R A  F  + I ++   +   +  + ++  G++  +   
Sbjct: 91  DNQLVLALDGVQDPGNLGTIIRIADWFGIENIFSSYETADCWNPKVVQATMGSIARVKLH 150

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           Y+ ++ L D L       +       D      QE+    + +++G EG G+
Sbjct: 151 YLNLNELIDYL----PVDYPIYATLLDGNNIYSQELSRHGM-IVMGNEGNGI 197


>gi|307188520|gb|EFN73257.1| RNA methyltransferase-like protein 1 [Camponotus floridanus]
          Length = 459

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P  DA+    L ++ D++ +P N+G ILR+A A  C+ ++  K  +    + + ++A GA
Sbjct: 215 PVDDAI---PLTIICDNIREPGNLGTILRAAAAVGCEKLLLMKGCTDLWDSKVLRTAVGA 271

Query: 184 LEHIP 188
              +P
Sbjct: 272 HFRVP 276


>gi|229525446|ref|ZP_04414851.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
           VL426]
 gi|229339027|gb|EEO04044.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
           VL426]
          Length = 244

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 92  PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S      + Q     +  L++G+
Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|145297150|ref|YP_001139991.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849922|gb|ABO88243.1| tRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 248

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A    GI       P       K +A G+   
Sbjct: 14  AQRQLDLTVCMEEVHKPHNLAAIVRTADAI---GIHRVHAVWPKTWIHKRKGTARGSQNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++  A+ ++ + G Q +    S+S             A+++G E  G+     
Sbjct: 71  VDVKLHPDIGSAVAELKASGMQIVATHLSESSVDFRTIDYTRPTAILVGQEKHGI----G 126

Query: 246 ETATSMAHLH----MPGIIKALNVSNAAAVALYITQNH 279
           E A ++A  H    M G++++LNVS AAA  LY  Q  
Sbjct: 127 EEALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQ 164


>gi|46203294|ref|ZP_00208891.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 132

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDA---VRNSQLLMVLDHVNDP 144
           P +  P + + KI+G   +H G+   T P    +  P  DA    +  + L+VLD V +P
Sbjct: 44  PYRMAPTEELTKILGSP-LHGGILAVTRPKPIRVFDPA-DAHLWAKEGKPLLVLDGVGNP 101

Query: 145 HNIGAILRSAVAFSCDGIITT 165
           HN+GAI R+   F  + ++ +
Sbjct: 102 HNLGAIARTMAFFGLERLLIS 122


>gi|218531683|ref|YP_002422499.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
 gi|218523986|gb|ACK84571.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
          Length = 269

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           N+G + R+A AF  D + +  +   P     +  SA  AL  +P  R  +    L     
Sbjct: 133 NVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALT-VPSARAPSGAALLDLAER 191

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                + L+    + L+      +  L+LG EG GL P++         + M     +LN
Sbjct: 192 HALTPLALTPSGSETLDALEPPARTLLLLGTEGPGL-PESLMVRARRVRIAMAPGFDSLN 250

Query: 265 VSNAAAVALY 274
           V+ A A+AL+
Sbjct: 251 VATAGAIALH 260


>gi|229505582|ref|ZP_04395092.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
 gi|229510746|ref|ZP_04400225.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
 gi|229517867|ref|ZP_04407311.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
 gi|229523380|ref|ZP_04412787.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
 gi|229608600|ref|YP_002879248.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
 gi|255744607|ref|ZP_05418558.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
 gi|262161261|ref|ZP_06030372.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
 gi|229339743|gb|EEO04758.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
 gi|229344582|gb|EEO09556.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
 gi|229350711|gb|EEO15652.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
 gi|229357805|gb|EEO22722.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
 gi|229371255|gb|ACQ61678.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
 gi|255737638|gb|EET93032.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
 gi|262029011|gb|EEY47664.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
          Length = 244

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 92  PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S      + Q     +  L++G+
Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVS------VHQTAFQAEGILLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|295690068|ref|YP_003593761.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295431971|gb|ADG11143.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 263

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 21/147 (14%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +  V DP N+G ++R+A A  C G+I         S    ++  G++  +   + + + +
Sbjct: 124 MQAVRDPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK-ATIPE 182

Query: 198 ALQKMHSWGFQTIGL---------SSDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQET 247
            L    +W    +G          S+D  KP          +LIL G E +GL P+    
Sbjct: 183 FLAWRETWPGSVVGTLLTATVDHKSADYVKP----------SLILMGNEQQGLPPELAAA 232

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + M G   +LN+S A  + +Y
Sbjct: 233 CDVNVKIPMRGRADSLNLSVATGIMIY 259


>gi|225352209|ref|ZP_03743232.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157456|gb|EEG70795.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 290

 Score = 38.5 bits (88), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 25/151 (16%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N G ++RSA A  C  ++         +  + +S  G+L H+P      LT   
Sbjct: 136 QVRDPGNAGTVIRSADAAGCSAVVLVDDCVDVFNPKVIRSTVGSLFHLPI-----LTMGT 190

Query: 200 QKMHSWG-------FQTIGLSSDSKKPLEQEIKNDKI----------ALILGAEGKGLRP 242
               +W        +      +DS++P   E   D I          A++ G E +GL  
Sbjct: 191 DDFFAWCDTHELAVYAADVYGTDSRQP---ESLTDVIAAPETLAGAKAVLFGNEARGLTK 247

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  E    +  + + G  ++LN+  ++AV L
Sbjct: 248 EVLERTDRIVSIPLYGKAESLNLGTSSAVML 278


>gi|322822058|gb|EFZ28222.1| hypothetical protein TCSYLVIO_5548 [Trypanosoma cruzi]
          Length = 1716

 Score = 38.5 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 122  LSPTLDAVRNSQLLMVLDHV-NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-- 178
            L P        Q L+VL  +  +P N+  + R      C  I T ++   S+ AV A   
Sbjct: 1550 LHPRALKQEKRQPLIVLSSLLQNPVNVAGLFR------CGEIFTIEKVVVSDQAVFAHPH 1603

Query: 179  ---SASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
               +A  A   +P+  +   NL + L  +   G+  IG+   +        +  ++ A++
Sbjct: 1604 FVAAARSAELWMPWDAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSIASYRFPERAAIL 1663

Query: 233  LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHF 280
            LGAEG G+  +          +   G+I++LNV    A+ +Y  T+ H 
Sbjct: 1664 LGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHL 1712


>gi|120553328|ref|YP_957679.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
 gi|120323177|gb|ABM17492.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
          Length = 242

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 16/192 (8%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P P+P   +  + + ++       QG+ L   PL   T     + +  + L  V DP N+
Sbjct: 57  PSPWPKHVISDRQMAQL-SDTRTPQGI-LAVVPLPPATRGESASREKALYLHEVQDPGNL 114

Query: 148 GAILRSAV---AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           G ILR+      F C  +++     P    V+ +++ GA+ H+P      L    Q+   
Sbjct: 115 GTILRTLAWFGGFRC--LLSPGSVDPFNPKVV-RASMGAIFHVPLETEVALDTLGQRYAR 171

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKA 262
                IG  S +K   + +        + G E +G+ PK   T        +PG   I++
Sbjct: 172 IACLDIGGDSITKPEFQAQ-----DCYLFGNEARGV-PKQALTELGAHAYTIPGAAAIES 225

Query: 263 LNVSNAAAVALY 274
           LN+++A  +A+Y
Sbjct: 226 LNLASAVNMAVY 237


>gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 261

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 17/147 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           +VL  V DP N+G ILR+A      G+I    TT  + P+      +++ GAL      R
Sbjct: 118 VVLVEVADPGNLGTILRTADGAGFSGVILVGATTDPFDPAA----VRASMGALFSQQIAR 173

Query: 192 ISNLTDALQKMHSWGFQ----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            S        + +W  Q     +G S               + L+LG+E  GL  +    
Sbjct: 174 TS-----WPDLLTWARQHRIALVGSSDRGASDYRATTYPRPLLLVLGSERHGLTDEQLAA 228

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  + M G   +LN++ AA + +Y
Sbjct: 229 CDLVVRIPMRGRSDSLNLAVAAGILMY 255


>gi|328708118|ref|XP_003243604.1| PREDICTED: hypothetical protein LOC100571270 [Acyrthosiphon pisum]
          Length = 1388

 Score = 38.5 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 5/152 (3%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL-EHIPYI 190
            S L++V   ++   N+G + R+   F    ++        +    A S +    + I  +
Sbjct: 1232 SMLIVVASLIDKVTNLGGLARTCQVFGASTLVVDNLSCVEKKEFTALSMTAEKHQSIIEV 1291

Query: 191  RISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R+ NL   LQK    G+Q +      DS K  E  +   K  L+LG E  G+      T 
Sbjct: 1292 RLKNLKSYLQKKKIEGYQIVAAEQTVDSVKLHEMNLPF-KCVLLLGNETSGIPHDLLSTM 1350

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                 +   GI+++LNV  A ++ ++  T+ H
Sbjct: 1351 DICVEIKQLGIVRSLNVHVAGSLFIWEYTKQH 1382


>gi|301631473|ref|XP_002944820.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase yibK-like
           [Xenopus (Silurana) tropicalis]
          Length = 158

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII--KALNV 265
           + + +++   +P+          L+ GAE +GL P  +ET      L +P +   ++LN+
Sbjct: 76  RMLAMTTHGAQPVHATAFRPGDWLVFGAETRGLTPALRETFAPSQRLRLPMVPGQRSLNL 135

Query: 266 SNAAAVALY--ITQNHFA 281
           SNA AV ++    QN FA
Sbjct: 136 SNAVAVTVFEAWRQNGFA 153


>gi|262165100|ref|ZP_06032837.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
 gi|262024816|gb|EEY43484.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
          Length = 244

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P+++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 92  PSIEVPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S       +   K + I L++G+
Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----KTAFKAEGI-LLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|254285517|ref|ZP_04960481.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|150424379|gb|EDN16316.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
          Length = 257

 Score = 38.5 bits (88), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S       +   K + I L++G+
Sbjct: 158 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----KTAFKAEGI-LLMGS 211

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 212 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249


>gi|296394021|ref|YP_003658905.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181168|gb|ADG98074.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 221

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 46/171 (26%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-------------GIITTKRY-------S 169
           R     +V++++    NIG ++R+A AF                G + T RY       +
Sbjct: 68  RRHPFHVVIENLAHDANIGTVVRTANAFLAQAVHIVGRRRWNRRGAMVTDRYQHVHHHAT 127

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P E A  A++      H+  + + N   A                   +P+E      + 
Sbjct: 128 PEEFARYAQA-----HHLAVVAVDNTHGA-------------------EPVETFALPRRC 163

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           AL+ G EG GL P+ +  A S   +   G  +++NV  AA V +  +I Q+
Sbjct: 164 ALLFGQEGSGLSPELRAIAQSAVAIAQFGSTRSINVGVAAGVVMHTWIVQH 214


>gi|262394780|ref|YP_003286634.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
 gi|262338374|gb|ACY52169.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
          Length = 244

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 25/228 (10%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLS-- 123
           +F +   KN L        + H F  +    Q    + G + +   L    + + L+S  
Sbjct: 24  LFLVQGEKNVLELASSSLKVKHVFATEAFLEQNASALSGFDCIEASLDDLTKASTLVSNN 83

Query: 124 --------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPS 171
                   P++   +   L++ LD V+DP N+G I+R A  +    II +      Y+P 
Sbjct: 84  AAIAVVEIPSVKVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP- 142

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
                 K+ S  +     +++S L D    +        G   + +   + E   + I L
Sbjct: 143 ------KTISATMGSFGRVQVS-LVDLPSYLEEANLPVYGAFLEGESVHKTEFAAEGI-L 194

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++G+E  G+R +  +  T+   +   G  ++LNV+ A  + L   + H
Sbjct: 195 LMGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATGIILDNMRRH 242


>gi|86607760|ref|YP_476522.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556302|gb|ABD01259.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 152

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 25/142 (17%)

Query: 144 PHNIGAILRSAVAFSCD-------GIITTKRYSPSESAVLAKSASGALEHIPYIRI---S 193
           P N G I R+  A           G   + RY       L ++     +H+   R    S
Sbjct: 13  PANTGNIARTCAATDTPLHLVDPLGFRLSDRY-------LKRAGLDYWQHVQLYRYPSWS 65

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMA 252
            L  A  +   W F   G      K L  E+       L+ G+E +GL P   ET  S+ 
Sbjct: 66  ALVQAHPEARFWCFSVRG------KALYTEVTYQPGDWLVFGSESRGLDPLFLETYPSV- 118

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + + G +++LN+SNA A+AL+
Sbjct: 119 RIPLRGPVRSLNLSNAVAIALF 140


>gi|313157998|gb|EFR57404.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 178

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 3/144 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VLD+V    N+GA  R+  AF+ + I      +   +  + K+A GA   +P+    
Sbjct: 25  VTVVLDNVRSLQNVGAFFRTGDAFAVEHIALCGITAVPPNRDIHKTALGAELTVPWSYYE 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250
                + ++H+ G++ + +       +    +     K AL+ G E  G+     +    
Sbjct: 85  TTEACIDRLHADGYEVLAVEQVEGAVMLDVFRAAPGVKYALVFGNEVMGVGQSAVDRCDG 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G   ++NV+ +  V L+
Sbjct: 145 AIEIPQAGTKHSINVAVSGGVVLW 168


>gi|198275948|ref|ZP_03208479.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
 gi|198271577|gb|EDY95847.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
          Length = 252

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D++    L + LD V DP N+G I+R A  F  + I  ++  + + +    ++  GAL  
Sbjct: 96  DSLPGHSLCLALDDVQDPGNLGTIIRIADWFGIEDIFCSQGTADAFNPKTVQATMGALAR 155

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +  +   +L + ++          G   D K    Q++    + +++G EG G+
Sbjct: 156 V-RLHYCDLKEFIRVQTERNVPVFGTFLDGKNIYSQKLSAQGV-IVMGNEGNGV 207


>gi|293190410|ref|ZP_06608842.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292820994|gb|EFF79949.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 243

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 12/157 (7%)

Query: 125 TLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           T+DA+R           + +++++   NIG+I+R+A A     +    R   +    +  
Sbjct: 80  TMDAIRADIAARSLPFEVAVENLDHDFNIGSIVRTANAMGARRVHVVGRKRWNRRGAMVT 139

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEG 237
                ++H P +R   L +   K    G   +G+ + +    LE  +  ++  L+ G+E 
Sbjct: 140 DRYLPVDHRPEVR--ELVEHCSKE---GLTLVGVDNVEGSVALEGAVLPERACLVFGSEA 194

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            GL  +       +  +   G  +++NV +AAA+ ++
Sbjct: 195 SGLSEEMIRACDIVVAITQRGSTRSMNVGHAAAIVMW 231


>gi|260778120|ref|ZP_05887013.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606133|gb|EEX32418.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 245

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P++   +   L++ LD V+DP N+G I+R A  +    I+ +K     Y+P       K+
Sbjct: 92  PSVKVPQAQGLIIALDGVSDPGNLGTIIRVADWYGIKHIVASKDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     + +S L D    +        G   + +   + E   + I L++G+E  G
Sbjct: 145 ISATMGSFGRVTVSQL-DLPSYLEQASIPVYGAFLEGESIHKTEFNAEGI-LLMGSESHG 202

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 203 IREQAAKFVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana]
 gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana]
 gi|332004772|gb|AED92155.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 350

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 73/157 (46%), Gaps = 23/157 (14%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAF--------SCDGIITTKRYSPSESAVLAKSAS 181
           R+  + +V++ ++D  NI A  RSA A         SCD   ++KRY+ +    +     
Sbjct: 151 RSYSVCLVVEGLSDFGNISAAFRSADALGIQSVHVVSCD---SSKRYNGNRHVSM----- 202

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKIALILGAEG 237
           GA + +         +  + + S G++     +G+ + S   ++        A+++G EG
Sbjct: 203 GAEKWLDIEFWDTPKECFKVLKSRGYRIATTHLGMDTVSIYDMDWSCPT---AIVVGNEG 259

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G+  +  E +     + M G++ + NVS AA + ++
Sbjct: 260 RGISDEALELSDLRCSIPMNGMVDSFNVSVAAGILMH 296


>gi|297201026|ref|ZP_06918423.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197712190|gb|EDY56224.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 248

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 9/140 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD+  +  N GA++R A  F   G++TT    P    V+   A         +  + 
Sbjct: 111 VVVLDNPRNLGNAGAVIRLAAGFGATGVVTTGTLDPWHPTVVRGGAG--------LHFAT 162

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             + L            L  +       ++ +D + L  G+E  GL P+ +  A  +  L
Sbjct: 163 AVERLTVAELPPGPVFALDPEGDDIRGVKLPDDAV-LAFGSERSGLSPELRARAGHLVAL 221

Query: 255 HMPGIIKALNVSNAAAVALY 274
            M   + + N++ + A+ LY
Sbjct: 222 PMRPQVSSYNLATSVAMTLY 241


>gi|303234407|ref|ZP_07321046.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
 gi|302494523|gb|EFL54290.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
          Length = 234

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++LD +++  N+G I+RS +AF    +     T   Y+P     + +++ GA   +   +
Sbjct: 94  IILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPK----VVRASMGAFFKLNIQK 149

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATS 250
             NL D  +   +    +  L   S +   +++K D+  +L  G EG GL PK       
Sbjct: 150 FDNLEDYKKNFPNNKIYSFLLDESSNEL--RDVKFDEPFSLAFGNEGAGL-PKEYYNENK 206

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  ++    + +LN+  A ++A+Y
Sbjct: 207 I-FINQSKDVDSLNLPIACSIAMY 229


>gi|241764772|ref|ZP_04762781.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN]
 gi|241365762|gb|EER60434.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN]
          Length = 228

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 30/235 (12%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++   K ++   Q S    +   ++L G H  SAAL    R    + +          +
Sbjct: 12  RDNAFVKDLRRLAQDSTAYRKQGRVWLEGDHLCSAALQRGVRPAIAVFS----------E 61

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-----TLDA-----VRNSQL 134
           +  P       +  Q   K++    +  GL  + + L SP      +DA     +R    
Sbjct: 62  SFWPQ---APAMYAQAASKVI---VLADGLFADISGLESPAPMGFVVDAAPSQGLRPGVA 115

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V D  N+G+ILRSA AF    +   K  +   +  + ++  GA  H     +  
Sbjct: 116 TVVLDRVQDAGNVGSILRSASAFGFRQVAALKGGAALWAPKVLRAGMGA--HFALDLVEG 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           L  AL+++       +  SS     L +       A +LG EG+G+ P  +  A+
Sbjct: 174 L--ALEELGVLDVPLLVTSSHEGDLLHRASLPWPCAWVLGHEGQGVSPALEAQAS 226


>gi|284035447|ref|YP_003385377.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
 gi|283814740|gb|ADB36578.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
          Length = 176

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 65/144 (45%), Gaps = 5/144 (3%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD +   +N+G++ R+A AF  + +             + K+A GA E + +  +++
Sbjct: 28  CLILDDIRSLNNVGSVFRTADAFRAEKLYLCGITGQPPHRDITKTALGATESVAWEHVTD 87

Query: 195 LTDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +T  ++++ + G+    +     S S      E  N   A +LG E  G+  +  + A  
Sbjct: 88  VTALVKQLQADGWLVAAVEQADGSTSLADFSPE-PNKPYAFVLGNEVTGVCDEVIQAADL 146

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           +  +   G   +LN++  A +  +
Sbjct: 147 VLEIPQFGTKHSLNIAVTAGIICW 170


>gi|77360023|ref|YP_339598.1| RNA methyltransferase, TrmH [Pseudoalteromonas haloplanktis TAC125]
 gi|76874934|emb|CAI86155.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 257

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 5/150 (3%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P    ++ S L++ LD V+DP N+G I+R A  +    I+T+   + S  A   K+ S  
Sbjct: 106 PQAAQLQTSGLILALDGVSDPGNLGTIIRVADWYGIKHIVTS---TDSADAYNPKTISAT 162

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +     + +S + D    + +      G   D +     +     + L++G+E  G+R  
Sbjct: 163 MGSFVRVSVSQV-DLPAHLATLKLPIYGAFLDGENVHNTQFTGSGV-LLMGSESHGIREA 220

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +  T    +   G  ++LNV+ A  + L
Sbjct: 221 CAKLVTDKITIPAFGQAESLNVAMATGIIL 250


>gi|319442020|ref|ZP_07991176.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 220

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 4/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       LEH P 
Sbjct: 67  RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLEHHPD 126

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +    A    H      +  ++    PLE     ++  L+ G EG G+  + Q  A+
Sbjct: 127 ---TGSVMAYAAAHDLTVVAVD-NTPGSVPLETAELPERCLLLFGQEGPGVTAEAQAGAS 182

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               +   G  +++N   AA +A++
Sbjct: 183 MTVSIAQFGSTRSINAGVAAGIAMH 207


>gi|85373248|ref|YP_457310.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786331|gb|ABC62513.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 270

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 3/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +V   + DP N+G +LR+  A    G+I         S    +++ GA+     I  +
Sbjct: 120 IWLVAQALRDPGNLGTMLRTGDAVGAGGLILLDDCVDPFSVEAVRASMGAV-FTQQIAQA 178

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-A 252
              D L  + S   Q +  S     P           +++G E +GL P+  ETA  +  
Sbjct: 179 RWDDFLLWLRSGDGQLVAASLRDAVPYRGAAYAAPCFILVGNESQGL-PENYETACDLRV 237

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M G   +LN + A AV  Y   + F
Sbjct: 238 TMPMRGRADSLNAAVAGAVLAYEVLDTF 265


>gi|262172137|ref|ZP_06039815.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
 gi|261893213|gb|EEY39199.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
          Length = 244

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P+++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 92  PSIEVPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S       +   K + I L++G+
Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----KTAFKAEGI-LLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|254229032|ref|ZP_04922453.1| rRNA methylases [Vibrio sp. Ex25]
 gi|151938500|gb|EDN57337.1| rRNA methylases [Vibrio sp. Ex25]
          Length = 268

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 13/160 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P++   +   L++ LD V+DP N+G I+R A  +    II +      Y+P       K+
Sbjct: 116 PSVKVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KT 168

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     +++S L D    +        G   + +   + E   + I L++G+E  G
Sbjct: 169 ISATMGSFGRVQVS-LVDLPSYLEEANLPVYGAFLEGESVHKTEFAAEGI-LLMGSESHG 226

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +R +  +  T+   +   G  ++LNV+ A  + L   + H
Sbjct: 227 VREEAAKLVTNKITIPAFGGAESLNVAMATGIILDNMRRH 266


>gi|156081941|ref|XP_001608463.1| RNA methyltransferase domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148801034|gb|EDL42439.1| RNA methyltransferase domain containing protein [Plasmodium vivax]
          Length = 214

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 10/151 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + + ++    NIG+I+RS VAF    I    R    ++ V      G  E+I     S
Sbjct: 1   MYVAIYNIGKKKNIGSIVRSCVAFRVSKIFVVSR---KKNQVNFFGHMGTCEYITIEYFS 57

Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++ +    +   G       ++S +     +  +N   A + G EG G+  +T      +
Sbjct: 58  SMKELKTHLRDNGILLYACEITSSAVPVTRRPFENKDTAFLFGNEGTGINDETLSYCDKV 117

Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
            ++   G    +LNVS + A+ L+    HFA
Sbjct: 118 VYIPQYGNGTCSLNVSVSCAIILH----HFA 144


>gi|86741865|ref|YP_482265.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
 gi|86568727|gb|ABD12536.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
          Length = 297

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 4/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ V     DP N G ++RSA A   D ++ T            +S++G+  H+P I  
Sbjct: 130 RLVAVCIGAGDPGNAGTVIRSADAAGADAVVFTGSGVDPFGGKCVRSSAGSHFHLPVIVE 189

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
             L   L ++ + G + +  S  + + ++  +   ++    A + G E  GL   T   A
Sbjct: 190 PALAGVLDRLRARGCRIVATSGAADRDIDTAVAAGELDGPTAWLFGNEAHGLASATLAAA 249

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
            ++  + + G  ++LN++ A+A+ LY +
Sbjct: 250 DAVLRVPVYGQAESLNLAVASALCLYAS 277


>gi|220911435|ref|YP_002486744.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219858313|gb|ACL38655.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 229

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 10/122 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A AF    +    R   +    +       + H P +      D +Q     
Sbjct: 93  NIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTVE-----DFVQWAQGE 147

Query: 206 GFQTIGLS--SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           G   IG+    DS  PLE  E+  D + L+ G EG GL P+  E A +   +   G  ++
Sbjct: 148 GLAIIGIDIFPDSV-PLETYELPRDCV-LVFGQEGPGLTPEVHEAAQATLSIEQFGSTRS 205

Query: 263 LN 264
           +N
Sbjct: 206 IN 207


>gi|110597360|ref|ZP_01385647.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
 gi|110340904|gb|EAT59375.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
          Length = 180

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + ++L ++    N+G++ R+A A   + +I +   +      + K+A GA + + +   +
Sbjct: 28  IYLMLHNIRSMWNVGSMFRTADAAGIEKMILSGYTATPPRKEIDKTALGAQDSVAWEYHA 87

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSM 251
           +   AL  +   G +  GL  ++  +P       D  + L++G E  GL  +  E    +
Sbjct: 88  DPLVALSALKRAGVKICGLEITEGSRPYSALTPGDFPLCLVVGNEVDGLENELLELCDEV 147

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +   G   +LNV+ A+ +AL+
Sbjct: 148 LEIPQYGTKHSLNVAVASGIALF 170


>gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51]
 gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 285

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +L++LD V DP N G ILR+A+A     +  T+      +  + +S  GA+  +      
Sbjct: 136 MLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMGAIFSLNIATHC 195

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              + L+   S         ++     E       +AL++G EG G     +        
Sbjct: 196 QPEEILKVCRSHKIPVFVGDAEGTDLYETHFAQ-PMALVVGNEGNGPSAAFRGPGVKRIT 254

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M   +++LNV+ A  + LY
Sbjct: 255 IPMSHQVESLNVAMATGIILY 275


>gi|258619991|ref|ZP_05715031.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587724|gb|EEW12433.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 260

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 17/156 (10%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 108 PRIEVPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNP-------KT 160

Query: 180 ASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
            S  +     +++S  +L D L K +       G   +     +   K + I L++G+E 
Sbjct: 161 ISATMGSFGRVQVSQVDLPDYLAKAN---LPVYGAFLEGVSVHQTAFKAEGI-LLMGSES 216

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 217 HGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 252


>gi|187924418|ref|YP_001896060.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
 gi|187715612|gb|ACD16836.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
          Length = 275

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 15/255 (5%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++  YK++++    +    +  +  L G H   A L+   +     + T  AL   +  
Sbjct: 21  RDNPLYKRLKALAGSTHQQRKSGHALLEGFHLAGAYLDVAGQPEM-CIVTDGALRHDEAQ 79

Query: 85  ANLP--HPFPVKTVPPQTIDKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLD 139
           A +       V T+P    D + G+    VH  G  L    L +P  D V  +Q  +VLD
Sbjct: 80  AIVARIEDHRVVTLP----DALFGQLSNVVHGVGTLLLVEKLDTPLPDTV--AQTCLVLD 133

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V D  N+G+ILRSA A     +      + + S+ + +S  GA  H   ++I    +A 
Sbjct: 134 GVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGA--HF-LLQIHEDAEAQ 190

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +       +   S   + +     +  +A + G EG G+    ++  +    +  PG 
Sbjct: 191 ALIERLAVPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQIWRDKVSLRVTIPQPGG 250

Query: 260 IKALNVSNAAAVALY 274
           +++LNV+ AAAV ++
Sbjct: 251 MESLNVAAAAAVCVF 265


>gi|189465794|ref|ZP_03014579.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
           17393]
 gi|189434058|gb|EDV03043.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
           17393]
          Length = 253

 Score = 38.1 bits (87), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 22/156 (14%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSP-SESAVLAKSASG 182
           +V +  L + LD V DP N+G I+R A  F  + I     T   Y+P +  A +   A  
Sbjct: 98  SVISHSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDVYNPKTVQATMGGIARV 157

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            L + P      L D +Q +        G   D +    Q++ ++ + +++G EGKG+  
Sbjct: 158 KLHYTP------LPDLIQSLKD--IPVYGTFLDGENMYTQKLSSNGL-IVMGNEGKGIGK 208

Query: 243 KTQETATSMAHLHMPG------IIKALNVSNAAAVA 272
           + ++       L++P         ++LNV+ A AV 
Sbjct: 209 EVEQLINR--KLYIPNYPAERETSESLNVAIATAVV 242


>gi|218191897|gb|EEC74324.1| hypothetical protein OsI_09608 [Oryza sativa Indica Group]
          Length = 1489

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            QL++V   V+   N+  + R+   F   G+    + S  E       +  A + +P + +
Sbjct: 1336 QLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMMEV 1394

Query: 193  --SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +++   L+K    G+  IGL  + + KPL+      K  L+LG E +G+         
Sbjct: 1395 PVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHVLD 1454

Query: 250  SMAHLHMPGIIKALNVSNAAAVALY 274
            +   +   GI+++LNV  + A+A++
Sbjct: 1455 ACVEIPQLGIVRSLNVHVSGAIAVW 1479


>gi|190405115|gb|EDV08382.1| hypothetical protein SCRG_00607 [Saccharomyces cerevisiae RM11-1a]
 gi|259145133|emb|CAY78397.1| Trm3p [Saccharomyces cerevisiae EC1118]
          Length = 1436

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182
            D V  S+L++V   V+ P N+G I R      CD    G++T +             A  
Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 1333

Query: 183  ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238
            A   +P   + +  +   ++     G+  IGL  +D    L+   +  K +LIL G E  
Sbjct: 1334 ADRWMPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAF 1393

Query: 239  GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274
            G+ P T  +   +   +   G+I+++N+  A AV ++
Sbjct: 1394 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429


>gi|87310712|ref|ZP_01092839.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
           DSM 3645]
 gi|87286469|gb|EAQ78376.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
           DSM 3645]
          Length = 166

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           TLD  R  QL++         N+  I+R+A   +   +I T         +  K A    
Sbjct: 14  TLDEPR--QLIVACCQFRSNVNLSRIVRAASCCAVSRVIVT-----GNMKIDPKIARDGA 66

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGL 240
           E +P  R  +L   L+++ S G++ +GL   +     Q+I +        L++G E +G 
Sbjct: 67  EKLPISRHRSLPPVLKELKSEGYRLVGLEQTTNS---QDIHHFSFVRNTVLVIGNERQGT 123

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                     +  + + G+  + NV+ A  +ALY     F +
Sbjct: 124 PDDVLRLLDDVVEIPVYGMPYSFNVATATCMALYEFCRQFPQ 165


>gi|73541555|ref|YP_296075.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
 gi|72118968|gb|AAZ61231.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
          Length = 261

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +  ++LD + D  N+G+ILRSA A            + + S    ++  GA  H+  
Sbjct: 110 RIEEDCIILDGLQDAGNVGSILRSAAAAGIRHAFLGTGCAFAWSVKTLRAGMGANFHLNI 169

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +    +     ++       +  SS +   +        +A I+G EG G+     E   
Sbjct: 170 VEHCTIDMLAPRL---AVPLLATSSHADAAVFDTDLRGPVAWIVGNEGAGVSDAWMEHVA 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               +  PG +++LNV  A A+ L+
Sbjct: 227 RTVGIPQPGGLESLNVGAATAICLF 251


>gi|15677017|ref|NP_274169.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|15677053|ref|NP_274205.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|7226378|gb|AAF41528.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|7226416|gb|AAF41563.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
          Length = 203

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHIPYIRI 192
            +VLD V DP N+G +LRSA A     +I  K  + + S  + ++  GA  L  I Y + 
Sbjct: 56  CVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFLSEI-YPQ- 113

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           ++L   L +     F T  L  + +  L  E   +  A + G EG G+     + A    
Sbjct: 114 ADLEIWLVRYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCV 172

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            + M    ++LNV+ AA + L+
Sbjct: 173 RIPMHDATESLNVAMAATICLF 194


>gi|300787904|ref|YP_003768195.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
 gi|299797418|gb|ADJ47793.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
          Length = 217

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 48/99 (48%)

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++A+G+L H+P  R+ ++  AL    + G +T      +   L++       A + G E 
Sbjct: 113 RAAAGSLFHLPIARVRDVPAALAACSAAGLRTFAAHGYADAELDRVDLAVPTAWVFGNEA 172

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            GL     + A     + M G  ++LN++ AAAV +Y +
Sbjct: 173 HGLPADVLDRADLAVRIPMYGRAESLNLATAAAVCVYTS 211


>gi|108705676|gb|ABF93471.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
            Japonica Group]
          Length = 1727

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            QL++V   V+   N+  + R+   F   G+    + S  E       +  A + +P + +
Sbjct: 1574 QLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMMEV 1632

Query: 193  --SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +++   L+K    G+  IGL  + + KPL+      K  L+LG E +G+         
Sbjct: 1633 PVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHVLD 1692

Query: 250  SMAHLHMPGIIKALNVSNAAAVALY 274
            +   +   GI+++LNV  + A+A++
Sbjct: 1693 ACVEIPQLGIVRSLNVHVSGAIAVW 1717


>gi|149371594|ref|ZP_01891010.1| RNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
 gi|149355221|gb|EDM43781.1| RNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
          Length = 259

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 22/160 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P  +A     + +VLD V DP N+G I+R    F    +I +K      +  + ++  G+
Sbjct: 103 PKKNAAITKGVRVVLDGVQDPGNLGTIIRLCDWFGVSQLICSKDTVDCFNPKVVQATMGS 162

Query: 184 LEH--IPYIRISNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           L    I Y+ I +L   LQ+  +  +G    G+S  S+K     I+ D   L++G EG G
Sbjct: 163 LARVVISYVDIKSL---LQETTLPIYGGVLEGVSLYSEK-----IEEDS-YLVVGNEGNG 213

Query: 240 LRPKTQETATSMAH-LHMPGI-----IKALNVSNAAAVAL 273
           +   ++E    + H + +P        ++LNV+ A A+ L
Sbjct: 214 I---SEEIIAILTHKITIPQYGASQKTESLNVATATAILL 250


>gi|159903443|ref|YP_001550787.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888619|gb|ABX08833.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9211]
          Length = 162

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-ALQKM 202
           P N G I R+  AF    +   K    S  + L K A   L++  +I ++   + +  K+
Sbjct: 18  PQNTGNIGRTCAAFQIP-LHLIKPLGFSLDSKLLKRA--GLDYWDFIDLTTHENFSAFKI 74

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--- 259
           H    + IG S     PL +     +  L+ G E  GL    +E    M  + MPG    
Sbjct: 75  HISDKRLIGFSKKDGIPLNKITFKPEDVLLFGREDTGLPEDIREACDLMVSIPMPGKADS 134

Query: 260 -----IKALNVSNAAAVALY 274
                +++LN+S+A A+A Y
Sbjct: 135 DGSNGVRSLNLSSACAIASY 154


>gi|183602741|ref|ZP_02964104.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683159|ref|YP_002469542.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191493|ref|YP_002968887.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196898|ref|YP_002970453.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183217979|gb|EDT88627.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620809|gb|ACL28966.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249885|gb|ACS46825.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251452|gb|ACS48391.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289177618|gb|ADC84864.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295794485|gb|ADG34020.1| hypothetical protein BalV_1432 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 269

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D   P+E     ++  L+ GAEG GL  K  E A  + ++   G ++++N   AAAV ++
Sbjct: 200 DGAVPMETYRFPERCLLLFGAEGPGLSKKALELADDVVYISQFGSVRSINAGAAAAVTMH 259


>gi|151941891|gb|EDN60247.1| Gm18 tRNA methyltransferase [Saccharomyces cerevisiae YJM789]
          Length = 1436

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182
            D V  S+L++V   V+ P N+G I R      CD    G++T +             A  
Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 1333

Query: 183  ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238
            A   +P   + +  +   ++     G+  IGL  +D    L+   +  K +LIL G E  
Sbjct: 1334 ADRWMPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAF 1393

Query: 239  GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274
            G+ P T  +   +   +   G+I+++N+  A AV ++
Sbjct: 1394 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429


>gi|224024447|ref|ZP_03642813.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
           18228]
 gi|224017669|gb|EEF75681.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
           18228]
          Length = 250

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 3/115 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V DP N+G I+R A  F    I  +     + +    ++  GAL  +  +   
Sbjct: 103 LCLALDDVQDPGNLGTIIRIADWFGIHHIFCSNGCVDAFNPKTVQATMGALARV-QLHYC 161

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +L   LQ          G   D +    QE+  + I +I+G EG G+ P+  ++ 
Sbjct: 162 DLPAFLQAQPK-EVPVFGTFLDGENLYAQELSTNGI-IIMGNEGNGISPQVAQSV 214


>gi|207347023|gb|EDZ73341.1| YDL112Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1436

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITTKRYSPSESAVLAKSASG 182
            D V  S+L++V   V+ P N+G I R      CD    G++T +             A  
Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIKVKNHPQFKNVAVT 1333

Query: 183  ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGK 238
            A   +P   + +  +   ++     G+  IGL  +D    L+   +  K +LIL G E  
Sbjct: 1334 ADRWMPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAF 1393

Query: 239  GLRPKTQETATSMA-HLHMPGIIKALNVSNAAAVALY 274
            G+ P T  +   +   +   G+I+++N+  A AV ++
Sbjct: 1394 GI-PGTLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429


>gi|153806377|ref|ZP_01959045.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
 gi|149131054|gb|EDM22260.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
          Length = 255

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 12/167 (7%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            Q LA+   P  + T    R+S L + LD V DP N+G I+R A  F  + II ++    
Sbjct: 83  QQVLAVFEQPQYTLTPGVARHS-LCLALDDVQDPGNLGTIVRLADWFGIEHIICSQNTVD 141

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G +  +  +  ++L D ++ +        G   + K   EQ +  + + 
Sbjct: 142 VYNPKTIQATMGGIARVK-VHYTSLPDFIRSLGE-DIPVFGTFLNGKNMYEQPLTANGL- 198

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPG------IIKALNVSNAAAV 271
           +++G EG G+  K  ET  +   L++P         ++LNV+ A AV
Sbjct: 199 IVMGNEGNGIG-KEVETLINR-KLYIPNYPQGKETSESLNVAIATAV 243


>gi|77024987|gb|ABA61413.1| rRNA methylase [uncultured marine group II euryarchaeote
           HF70_39H11]
          Length = 232

 Score = 38.1 bits (87), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+ +L  V    N+G  +R A      G+I T  ++  +   + ++A      +P +   
Sbjct: 87  LIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWTSDDRHRIIRAAMRTNRFMPVV--- 143

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
              D L  + SW  + + +    +++P + ++  D I LI+G E  G+  +  E A    
Sbjct: 144 FGCDELAALKSWKGRVLAIEDVGTEEPWDADLTGDVI-LIIGGENAGVSKELLEAADQTI 202

Query: 253 HLHMPGIIKALNVSNAAAV 271
            + M G   + N+    AV
Sbjct: 203 RIPMAGFTPSYNLQAPMAV 221


>gi|326331232|ref|ZP_08197526.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
           Broad-1]
 gi|325951002|gb|EGD43048.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
           Broad-1]
          Length = 262

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 14/149 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHIPY 189
           L+++   V DP N G ++R A A    G+I    +   Y+P       +++ G+  H+P 
Sbjct: 113 LVVICADVRDPGNAGTVIRCADAAGASGVILAGDSVDLYNPKT----IRASVGSAFHLPV 168

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQ 245
               +   A++   + G     L++D     +    +D +A     ++G E  GL P+  
Sbjct: 169 AVERDPVAAVKAAKAAGLTV--LAADMHGTADLFSADDLLARPTAWLMGNEAWGLPPELA 226

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
             A  +  + + G  ++LN+S AAA+ LY
Sbjct: 227 AEADEIVSIPIFGKAESLNLSTAAALCLY 255


>gi|222624007|gb|EEE58139.1| hypothetical protein OsJ_09050 [Oryza sativa Japonica Group]
          Length = 1695

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 4/145 (2%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            QL++V   V+   N+  + R+   F   G+    + S  E       +  A + +P + +
Sbjct: 1542 QLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMMEV 1600

Query: 193  --SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +++   L+K    G+  IGL  + + KPL+      K  L+LG E +G+         
Sbjct: 1601 PVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHVLD 1660

Query: 250  SMAHLHMPGIIKALNVSNAAAVALY 274
            +   +   GI+++LNV  + A+A++
Sbjct: 1661 ACVEIPQLGIVRSLNVHVSGAIAVW 1685


>gi|289643246|ref|ZP_06475372.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
 gi|289506951|gb|EFD27924.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
          Length = 265

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 73/154 (47%), Gaps = 4/154 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ +     DP N G I+RSA A   D ++              ++++G++ H+P +  
Sbjct: 98  RLVAICVDTQDPGNAGTIVRSADAAGADAVVFAGASVDPFGGKAVRASAGSIFHLPVVTD 157

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
             + DA++++   G + +  +  + + ++      ++      + G E +GL   T  +A
Sbjct: 158 IGVADAVRQIREHGCRIVATTPSAPRDIDTAQDAGELDTPTGWLFGNEARGLPRATVVSA 217

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            ++  + + G  ++LN++ A A+ LY +    A+
Sbjct: 218 DAVLRVPVYGQAESLNLAVATAICLYASARAQAR 251


>gi|241764399|ref|ZP_04762424.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
           2AN]
 gi|241366189|gb|EER60760.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
           2AN]
          Length = 168

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 4/149 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  ++ ++     E+   +R    
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCTLHLIEPLGFSMEDRLMRRAGLDYHEYAQVLRHPGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T  L++      +   L++   +   +        L+ GAE +GL P+ +ET      L 
Sbjct: 64  TAFLRQAQPDPARMFALTTHGTQTAFETCFLPGDWLVFGAETRGLPPELRETFPPAQRLR 123

Query: 256 MPGII--KALNVSNAAAVALY--ITQNHF 280
           +P +   ++LN+SNA AV ++    QN F
Sbjct: 124 LPMVSGQRSLNLSNAVAVTVFEAWRQNSF 152


>gi|254874998|ref|ZP_05247708.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254840997|gb|EET19433.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 213

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEH 186
           +   ++VLD + DP NIG ILR+A+A     +I    T   ++P       ++  GA   
Sbjct: 101 DDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKA----IRAGMGAQFS 156

Query: 187 IPYIRISNLTD-----ALQKMHSW 205
           + +  I+NL        LQ+   W
Sbjct: 157 LKFGYITNLAKLKNIAKLQQRKIW 180


>gi|150024795|ref|YP_001295621.1| peroxiredoxin [Flavobacterium psychrophilum JIP02/86]
 gi|149771336|emb|CAL42805.1| Probable peroxiredoxin [Flavobacterium psychrophilum JIP02/86]
          Length = 199

 Score = 38.1 bits (87), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 144 PHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDALQ 200
           P  IG  + S++  + DG  +  + ++ S+  +L     G     PY  + +S L +A +
Sbjct: 31  PLLIGQKIPSSILQTIDGKAVKFEDFTKSKKTILVVYRGG---WCPYCNLHLSALAEAEE 87

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           K+   G+Q I +S DS + L + I  DK+   L ++ KG
Sbjct: 88  KLIEMGYQIIAVSPDSPESLRETITKDKLNYTLLSDNKG 126


>gi|242022908|ref|XP_002431879.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517220|gb|EEB19141.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 364

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 103 KIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +I    A  QG +A+   P     ++  +   L ++ D++ +P N+G+ILR A A  C  
Sbjct: 126 RIWSDVATSQGVIAVFDLPDQKKIINKFKTVPLTIICDNIREPGNLGSILRVAGAVGCKK 185

Query: 162 IITTKRYSPSESAVLAKSASGALEHIP 188
           +I T       +A + +SA+G    +P
Sbjct: 186 VIMTTGCVDLWNAKVIRSAAGIHFRLP 212


>gi|147905554|ref|NP_001085673.1| RNA methyltransferase-like protein 1 [Xenopus laevis]
 gi|82184432|sp|Q6GPJ4|RMTL1_XENLA RecName: Full=RNA methyltransferase-like protein 1
 gi|49116890|gb|AAH73125.1| MGC84529 protein [Xenopus laevis]
          Length = 419

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           L ++ D++ DP N+G ILR A    C  ++ TK    +    + ++  GA   +P I
Sbjct: 205 LSLICDNIRDPGNLGTILRCAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRLPII 261


>gi|50550413|ref|XP_502679.1| YALI0D10989p [Yarrowia lipolytica]
 gi|49648547|emb|CAG80867.1| YALI0D10989p [Yarrowia lipolytica]
          Length = 1383

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 5/150 (3%)

Query: 129  VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            +   +L++V   V+ P N+G I R +       ++T    S ++       A  A + +P
Sbjct: 1227 INRGELILVASLVDKPPNLGGICRLSDVLGAQ-LLTLNDISVAKHPQFKNVAVTADQWMP 1285

Query: 189  Y--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGKGLRPKT 244
               +++  + + ++     G+  IGL  +D  K L ++    K +LIL G E +G+    
Sbjct: 1286 MAEVKVDEIAEFMRAKKREGYTLIGLEQTDQSKQLNKDFVFPKKSLILLGMEREGIPGNL 1345

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     +   G+I+++N+  AAAV ++
Sbjct: 1346 LAELDYAVEIKQIGMIRSMNIQTAAAVIVH 1375


>gi|313471791|sp|A1WBM9|TRML_ACISJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 162

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGII--KALNVSNAAAVALY--ITQNHF 280
            + GAE +GL P+ +ET      L +P +   ++LN+SNA AV +Y    QN F
Sbjct: 99  FVFGAESRGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSF 152


>gi|254505367|ref|ZP_05117514.1| rRNA methylase [Vibrio parahaemolyticus 16]
 gi|219551484|gb|EED28462.1| rRNA methylase [Vibrio parahaemolyticus 16]
          Length = 244

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 22/247 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +   +   LFL         L N S  + Q+ AT+  LA+     N    
Sbjct: 8   KLLRALGQKKQR--KAHGLFLVQGEKNVLELANSSLTVKQIFATQEFLAQ-----NQSEL 60

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
              + +     D       V    A+    +  P+++  +   L++ LD V+DP N+G I
Sbjct: 61  SGFECIEASLDDLTKASTLVSNNAAIAVVEI--PSVETPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +R A  +    I+ +      Y+P       K+ S  +     + +S L D    +    
Sbjct: 119 IRVADWYGIKHIVASTDCADPYNP-------KTISATMGSFGRVTVSQL-DLPSYLEQSN 170

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G   + +   + E   + I L++G+E  G+R +  +  T    +   G  ++LNV+
Sbjct: 171 LPVYGAFLEGESVHKTEFAAEGI-LLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVA 229

Query: 267 NAAAVAL 273
            A  + L
Sbjct: 230 MATGIIL 236


>gi|115450091|ref|NP_001048646.1| Os03g0100500 [Oryza sativa Japonica Group]
 gi|113547117|dbj|BAF10560.1| Os03g0100500 [Oryza sativa Japonica Group]
          Length = 220

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL++V   V+   N+  + R+   F   G+    + S  E       +  A + +P + +
Sbjct: 67  QLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMMEV 125

Query: 193 --SNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             +++   L+K    G+  IGL   +  KPL+      K  L+LG E +G+         
Sbjct: 126 PVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHVLD 185

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +   +   GI+++LNV  + A+A++
Sbjct: 186 ACVEIPQLGIVRSLNVHVSGAIAVW 210


>gi|294661208|ref|YP_003573084.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336359|gb|ACP20956.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 258

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYS 169
           LA+ T P  +P   A+   Q  +VLD+++DP N+G I+R A  +   GII    T + Y+
Sbjct: 93  LAVATIPDNTPF--AIGEHQYGLVLDNISDPGNLGTIIRVADWYGIAGIICSTNTVELYN 150

Query: 170 P 170
           P
Sbjct: 151 P 151


>gi|89097638|ref|ZP_01170526.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
           B-14911]
 gi|89087497|gb|EAR66610.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
           B-14911]
          Length = 159

 Score = 38.1 bits (87), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A      +       ++  +L ++     +H+  +   +L +  +K  
Sbjct: 15  PANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQHVTILYYDSLDEFYEK-- 72

Query: 204 SWGFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGI 259
           + G +   L+   +KP    E   K      I G E  GL  + +E     A  + M G 
Sbjct: 73  NAGGEFFYLTKFGQKPYTSFEYSDKEKDYYFIFGKETTGLPAEVKENNKDRALRIPMTGN 132

Query: 260 IKALNVSNAAAVALY 274
           +++LN+SN AA+ +Y
Sbjct: 133 VRSLNLSNTAAILIY 147


>gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
 gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
          Length = 240

 Score = 37.7 bits (86), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIR 191
           ++ +VL    +P NIGA+ R+   F  D +     YS P   A  A +AS  L+      
Sbjct: 10  RVAVVLVGARNPLNIGAVARAMSNFGFDDLRLVNDYSIPLAEARSAVNASHVLQAAR--E 67

Query: 192 ISNLTDALQKMH-SWGFQTIGLSS-----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             ++ +A+      +G   IG        D+   + + +  DKIA++ G+E  GL  +  
Sbjct: 68  FGSVAEAVADCQLIYGTTAIGERKPEHPVDALPDVLEHVGADKIAILFGSEKTGLSNEAL 127

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  + M     ++N+  AAAV LY
Sbjct: 128 SHCQRLLTIPMSATNVSMNLGQAAAVILY 156


>gi|301765370|ref|XP_002918107.1| PREDICTED: RNA methyltransferase-like protein 1-like [Ailuropoda
           melanoleuca]
 gi|281342377|gb|EFB17961.1| hypothetical protein PANDA_006496 [Ailuropoda melanoleuca]
          Length = 423

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I
Sbjct: 212 ICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 265


>gi|17227671|ref|NP_484219.1| rRNA methylase [Nostoc sp. PCC 7120]
 gi|17135153|dbj|BAB77699.1| rRNA methylase [Nostoc sp. PCC 7120]
          Length = 273

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 70/148 (47%), Gaps = 2/148 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++ L+ + DP N+G I+R+A A    G++ ++     ++  + ++++G    +      
Sbjct: 124 VVLALETIQDPGNLGTIIRTAAAAGASGLLLSQDSVDLDNPKVLRASAGQWFRLATAVSE 183

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMA 252
           +L   +Q     G Q +  +  + K    EI   K +LI LG EG GL P     A    
Sbjct: 184 DLKATVQLCQQAGMQVVA-TLPTAKLTYWEIDWRKPSLILLGNEGAGLSPDLAAMADQEV 242

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + +   +++LNV+  +A+ LY  Q   
Sbjct: 243 KIPLSPGVESLNVAITSALMLYEVQRQL 270


>gi|60593966|pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
 gi|60593967|pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
          Length = 287

 Score = 37.7 bits (86), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           VR   L ++ D    P NIG+I+RSA A    G+I     +        +S++G+L  +P
Sbjct: 122 VREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLP 181

Query: 189 YIRI 192
            +R+
Sbjct: 182 AVRV 185


>gi|60593968|pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
 gi|60593969|pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
 gi|11141830|gb|AAG32066.1| rRNA methyltransferase [Streptomyces viridochromogenes]
          Length = 287

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           VR   L ++ D    P NIG+I+RSA A    G+I     +        +S++G+L  +P
Sbjct: 122 VREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLP 181

Query: 189 YIRI 192
            +R+
Sbjct: 182 AVRV 185


>gi|222112034|ref|YP_002554298.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
 gi|221731478|gb|ACM34298.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
          Length = 162

 Score = 37.7 bits (86), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGII--KALNVSNAAAVALY--ITQNHF 280
            + GAE +GL P+ +ET      L +P +   ++LN+SNA AV +Y    QN F
Sbjct: 99  FVFGAESRGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSF 152


>gi|258627222|ref|ZP_05722010.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580524|gb|EEW05485.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 244

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 92  PRIEVPKAQGLMIGLDGVSDPGNLGTIIRLADWYGIQHIIASQDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRIS--NLTDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            S  +     +++S  +L D L K +   +G    G+S       +   K + I L++G+
Sbjct: 145 ISATMGSFGRVQVSQVDLPDYLAKANLPVYGAFLEGVSVH-----QTAFKAEGI-LLMGS 198

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G+R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 199 ESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|224000635|ref|XP_002289990.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220975198|gb|EED93527.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 302

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 10/148 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIP 188
           R S+L++V++   + HN  AILR+A A    G+      SP   ++ L   A  A E + 
Sbjct: 1   RTSRLVIVVERCTNDHNYSAILRTAEAL---GVQHVYIISPKTINSTLVDEA--ATEWLT 55

Query: 189 YIRISNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                +  + ++ + S   +     LS  +    E+ I+  K+A++ G E  G   +   
Sbjct: 56  VHEFDDTKECIETLRSENREIWVTDLSQVASCLTEEGIQ--KVAIVFGTEAVGCTAEMLN 113

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A    +L + G   +LN+S A A+ ++
Sbjct: 114 AADLRVYLPLRGFADSLNLSVATALVVH 141


>gi|71745782|ref|XP_827521.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70831686|gb|EAN77191.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 586

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           ++VLD+V+DP  +G +LR+A  F  D +I T   +      + ++A GA
Sbjct: 239 VLVLDNVDDPGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGA 287


>gi|332292916|ref|YP_004431525.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171002|gb|AEE20257.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 261

 Score = 37.7 bits (86), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 38/159 (23%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGAL----- 184
           LL++ +    P NIGA+LR+A A   D +I     T  Y+P+    + +S+ G +     
Sbjct: 116 LLLIAEAPEKPGNIGALLRTADAAGVDAVIIANPKTDLYNPN----IIRSSVGCVFTTQI 171

Query: 185 ------EHIPYIR---ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
                 E I +++   I+  +  LQ+   +  Q      D   P          A+++G 
Sbjct: 172 ATGTTAEVISFLQEKGIAVYSAILQEAVDYAAQ------DYTTP---------TAIVVGT 216

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E  GL  + +   T++  + M G I ++NVS AA + ++
Sbjct: 217 EATGLSQEWRTVGTNI-KIPMRGKIDSMNVSVAAGILVF 254


>gi|312149761|gb|ADQ29832.1| putative tRNA/rRNA methyltransferase [Borrelia burgdorferi N40]
          Length = 218

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R + L  VL+ +    N  A +R+        +   ++   ++  +      G+ + I
Sbjct: 29  SLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +   
Sbjct: 87  NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     + M G  ++ N+S A A+ +Y
Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMY 174


>gi|261331720|emb|CBH14714.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 586

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           ++VLD+V+DP  +G +LR+A  F  D +I T   +      + ++A GA
Sbjct: 239 VLVLDNVDDPGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGA 287


>gi|218458015|ref|ZP_03498106.1| hypothetical protein RetlK5_00622 [Rhizobium etli Kim 5]
          Length = 40

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAA 269
           KT+ET T+++ L MPG IK+LNVSNAA
Sbjct: 1   KTRETVTALSRLDMPGAIKSLNVSNAA 27


>gi|126662427|ref|ZP_01733426.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
 gi|126625806|gb|EAZ96495.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
          Length = 241

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L++ LD V DP N+G I+R    F  + +  ++      +  + ++  G++  +  + 
Sbjct: 96  SGLILALDDVRDPGNLGTIIRLCDWFGIETLFCSEESVDIYNPKVVQATMGSISRVNVVY 155

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +L   L K     F T    S+    + QE    +  +++G E  G+ P  ++  +  
Sbjct: 156 -GSLEAFLTKTKLPIFGTFMDGSN----IYQEALPKEGVIVMGNEANGISPSVEKLVSER 210

Query: 252 AHLHMPGIIK---ALNVSNAAAVAL 273
             +   G I+   +LNV+ A A+ L
Sbjct: 211 IAIPRFGNIQLTESLNVATATAIIL 235


>gi|297798722|ref|XP_002867245.1| hypothetical protein ARALYDRAFT_491486 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313081|gb|EFH43504.1| hypothetical protein ARALYDRAFT_491486 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1081

 Score = 37.7 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +YA+     R  +  + F+  SRH SQP  L  +G HTVS  +  P  +   +  T   L
Sbjct: 114 NYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHG-HTVSGEIRTPDTQ--SVRTTSGPL 170

Query: 79  ARLDWDA-NLPHPFPVKTVPPQTID 102
              D +A + P+  P + VP + +D
Sbjct: 171 GPSDRNAISSPYIDPRQPVPVRIVD 195


>gi|15236786|ref|NP_194967.1| CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase,
           transferring glycosyl groups [Arabidopsis thaliana]
 gi|73917709|sp|O48946|CESA1_ARATH RecName: Full=Cellulose synthase A catalytic subunit 1
           [UDP-forming]; Short=AtCesA1; AltName: Full=Protein
           RADIALLY SWOLLEN 1; Short=AtRSW1
 gi|2827139|gb|AAC39334.1| cellulose synthase catalytic subunit [Arabidopsis thaliana]
 gi|4049343|emb|CAA22568.1| cellulose synthase catalytic subunit (RSW1) [Arabidopsis thaliana]
 gi|7270145|emb|CAB79958.1| cellulose synthase catalytic subunit (RSW1) [Arabidopsis thaliana]
 gi|30794043|gb|AAP40467.1| putative cellulose synthase catalytic subunit (RSW1) [Arabidopsis
           thaliana]
 gi|110740603|dbj|BAE98406.1| cellulose synthase catalytic subunit [Arabidopsis thaliana]
 gi|332660653|gb|AEE86053.1| cellulose synthase A catalytic subunit 1 [UDP-forming] [Arabidopsis
           thaliana]
          Length = 1081

 Score = 37.7 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +YA+     R  +  + F+  SRH SQP  L  +G HTVS  +  P  +   +  T   L
Sbjct: 114 NYAQGANKARHQRHGEEFSSSSRHESQPIPLLTHG-HTVSGEIRTPDTQ--SVRTTSGPL 170

Query: 79  ARLDWDA-NLPHPFPVKTVPPQTID 102
              D +A + P+  P + VP + +D
Sbjct: 171 GPSDRNAISSPYIDPRQPVPVRIVD 195


>gi|257456092|ref|ZP_05621295.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
 gi|257446550|gb|EEV21590.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
          Length = 271

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 81/179 (45%), Gaps = 30/179 (16%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQL---------LMVLDHVNDPHNIGAILRSAVAFSCDG 161
           HQG+    A +  P + AV   ++         +++ D + + +N+GA++RSA  F  + 
Sbjct: 85  HQGV---VAMIEEPCIAAVTPERIKQWEAGKAAVLLCDRIGNANNLGAVIRSAAFFGIEH 141

Query: 162 IITT-----KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD- 215
           I+ +      + +PS   +    A G +E   +I +     A   + +     + L +D 
Sbjct: 142 IVISGEDAQAQLTPSAYRI----AQGGME---FITLYTAPSAEHFLKACSGYLMRLGADH 194

Query: 216 ----SKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               S K +   ++ D+ + ++LG E  G+  + ++    +  +   G I++LNV+ A 
Sbjct: 195 RAYRSLKDIPSLVRADEAVVVVLGNEEHGISAEAKKLCDVLVKISGSGAIESLNVAQAG 253


>gi|121595834|ref|YP_987730.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
 gi|120607914|gb|ABM43654.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
          Length = 189

 Score = 37.7 bits (86), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGII--KALNVSNAAAVALY--ITQNHF 280
            + GAE +GL P+ +ET      L +P +   ++LN+SNA AV +Y    QN F
Sbjct: 126 FVFGAESRGLPPELRETFPPAQRLRLPMLPNQRSLNLSNAVAVTVYEAWRQNSF 179


>gi|119946835|ref|YP_944515.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
 gi|119865439|gb|ABM04916.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
          Length = 247

 Score = 37.7 bits (86), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L  ++  +L++VLD V DP N+G I+R A  +    II +   +   +  +  ++ G+  
Sbjct: 100 LPQIQKDELILVLDQVGDPGNLGTIIRVADWYGIKHIICSPDCADFYNPKVIAASMGSFA 159

Query: 186 HIPYIRISNLTDAL--QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            +  +  ++L++ L  Q M  +G    G      + + +   N    +++G+E  G+ P+
Sbjct: 160 RVQ-VSHTDLSEYLSQQSMAIYGAFLEG------ENIHKANLNKSAFIVMGSESHGISPE 212

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAV 271
            ++  +    +   G  ++LNV+ A  +
Sbjct: 213 IEKFISHKMTIPSFGGAESLNVAMATGI 240


>gi|330872262|gb|EGH06411.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 60

 Score = 37.7 bits (86), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           I G EGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 3   IRGEEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 45


>gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 244

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 25/169 (14%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGALEHIP 188
             QL +VL     P N+GA+ R    F    +I +    Y+   +  LA      LE + 
Sbjct: 4   GEQLTVVLHQTRSPDNLGAVARVMANFGFFRLILSDPATYAFRGAERLAVKGERVLERMA 63

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSK-------------KPLEQEIKNDKIALILGA 235
             R   L +AL +        +G +S ++             + L +E    ++AL+LG 
Sbjct: 64  VAR--ELPEALSEC----VYAVGTTSRTQLKGRIPLTPEQAVRRLAEESARGRVALVLGG 117

Query: 236 EGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQNHFAK 282
           E +GL     E A     L +P   +  ++N++ AA V LY+     A+
Sbjct: 118 EQRGL--SDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLYLCGREDAQ 164


>gi|298253229|ref|ZP_06977021.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532624|gb|EFH71510.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 268

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/180 (19%), Positives = 72/180 (40%), Gaps = 31/180 (17%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD+    +  + +++     NIG+++R+A AF+   +     +  +    L       +E
Sbjct: 78  LDSKGRHEFEVAVENWTHDFNIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELYQYVE 137

Query: 186 HIPYIRI------SNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIA----- 230
             P I         N+    ++ H +  +     +   + +    EQ+ KN ++      
Sbjct: 138 CCPTIETLVTNWRENMLKEAEEAHQFLLKAQAEGNKEAEKIANIKEQDAKNARVIALDII 197

Query: 231 ----------------LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                           ++ GAEG GL  K  E A  + ++   G +++LN   AAAV+++
Sbjct: 198 PGAVAMENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMH 257


>gi|224014732|ref|XP_002297028.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968408|gb|EED86756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 542

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A+  +C   +T +++   E+A+ +       E    I  S+L  A   +    +  +
Sbjct: 354 MRTAMGSAC--WMTLRQFGSIEAAITSLRE----EEDCLIYASDLNPASMDVRDLNWD-V 406

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             SS      +Q+ +   I +++G E +G+  K +E A    +L M G  ++ N+S A A
Sbjct: 407 DYSSGGNADSDQQKEQRPICIVMGNEERGISDKMRELADETFYLPMCGFAESFNLSVATA 466

Query: 271 VAL 273
           + L
Sbjct: 467 ITL 469


>gi|119960823|ref|YP_946361.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119947682|gb|ABM06593.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 228

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A AF    +    R   +    +       + H P +      D +Q     
Sbjct: 91  NIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTVE-----DFVQWAEGE 145

Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G   IG+    DS  PLE         L+ G EG GL P+  + A +   +   G  +++
Sbjct: 146 GLAVIGIDIFPDSV-PLETYDLPKNCVLVFGQEGPGLTPEVHDAAVATLSIEQFGSTRSM 204

Query: 264 N 264
           N
Sbjct: 205 N 205


>gi|33322427|gb|AAQ06939.1|AF496269_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 83

 Score = 37.4 bits (85), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 202 MHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           +   GF+T  +     + D   P+ +E   D++A+ILG+EG GL P+T   +     + M
Sbjct: 1   LQELGFKTAAMALRDNTVDIDDPVLKEA--DRLAVILGSEGPGLLPQTIAESDYTIKIPM 58

Query: 257 PGIIKALNVSNAAAVALY 274
              + +LNV+ A+++A +
Sbjct: 59  AERVDSLNVAAASSLAFW 76


>gi|83999870|emb|CAI59983.1| putative tRNA/mRNA methyltransferase [Streptomyces tenjimariensis]
          Length = 164

 Score = 37.4 bits (85), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-AKSASGALEHIPYIR 191
           +L++V   +    N+ +I+R+A    C G+   KR     SA +  K A    +H+    
Sbjct: 18  ELVIVCAPLRTKANLSSIVRTA---GCCGV---KRVIACGSAAIDRKVARDGADHVELEL 71

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              L   L+K+ + G++ + L   S    L       K AL++G E  GL  +  +    
Sbjct: 72  RRTLAPVLKKLSAEGYRLVALEQTSNSTSLHDFAFPRKTALVIGNERTGLDDEELKLVDD 131

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + + G+  + NV+ A A+A+Y
Sbjct: 132 CTEIPVWGMPHSYNVATATAMAMY 155


>gi|50308721|ref|XP_454364.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643499|emb|CAG99451.1| KLLA0E09197p [Kluyveromyces lactis]
          Length = 1397

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 9/156 (5%)

Query: 125  TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSA 180
            ++++V  S+L++V   V+   N+G I R         +    I  K++   ++  +    
Sbjct: 1238 SIESVARSELIVVASLVDKAPNLGGICRLCDVLGVGTMTIHDIRVKQHPQFKNVAVTADR 1297

Query: 181  SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAEGK 238
               +E +P   I +  +A +K+   G+  IGL  +DS   L  E K   K  ++LG E  
Sbjct: 1298 WMPIEEVPVDGIISYMNA-KKLE--GYTLIGLEQTDSSIQLNSEFKFPSKSVILLGTEAH 1354

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+     +       +   G+I+++N+  A AV ++
Sbjct: 1355 GIPGHLLKELDLCLEIKQSGVIRSMNIQTATAVIVH 1390


>gi|329889553|ref|ZP_08267896.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328844854|gb|EGF94418.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 279

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 3/151 (1%)

Query: 126 LDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           LDA++       + L+ V DP N+G I+R+A +  C G+I         S    ++  G+
Sbjct: 119 LDAIQPDAKPCWVALEQVRDPGNLGTIIRTADSAGCGGVILIGDCVDPFSVEAVRATMGS 178

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +   + S   + L     W    IG   D+              +++G E  GL  +
Sbjct: 179 VFAVTISKASR-EEFLAWRAQWPGSVIGTRLDATHGYRDSPVRHPAIIMMGNEQAGLTDE 237

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     + M G   +LN++ A  V +Y
Sbjct: 238 LAAACDLNVKIPMRGRADSLNLAVATGVMVY 268


>gi|307183316|gb|EFN70185.1| Probable methyltransferase TARBP1 [Camponotus floridanus]
          Length = 325

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 118 TAPLLSPTLDAVRNSQ-----------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           T PL S   ++++ S            L++V   +N P N+G I R+   F    ++   
Sbjct: 142 TIPLYSDIFESMKESMYQQDLQSHKEGLIVVASFINRPPNLGGIARTCEIFGVKALVIAN 201

Query: 167 --RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQ 222
                  E   L+ SA   + +I  ++   L   L +  + G+  IG   +++S   L+ 
Sbjct: 202 LDYIKDKEFQCLSVSAERWI-NILQVKPHELQKYLFEKKNAGWSLIGAEQTANSINLLQT 260

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +  K  L+LG E  G+         +   +   G+I++LNV   AA+ ++
Sbjct: 261 KFEK-KTILVLGNEKDGIPANFIPLFDTCVEIPQVGVIRSLNVHVTAAICIW 311


>gi|283777832|ref|YP_003368587.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283436285|gb|ADB14727.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 170

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSESAVLAKSASGA 183
           T+ A    +L ++L H   P N G I RS VA      ++    +  SE   L ++    
Sbjct: 4   TVSAKYVPRLHVILWHPEIPPNTGNIGRSCVAVGAKLWLVRPLGFDISEKQ-LRRAGLDY 62

Query: 184 LEHIPYIRISNLTD-------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +H+ +  + +L +         ++   W F   G S  S    EQ    D   L+ G E
Sbjct: 63  WQHLEWEAVDSLDEIRAKIPEPFEQQRVWLFTKFGQSRYSDVTYEQ---GD--VLLFGCE 117

Query: 237 GKGLRPKTQETATSMAHLHMP--GIIKALNVSNAAAVALY 274
             GL  +      S A L +P    +++LN+S++A  A+Y
Sbjct: 118 SAGLPEEIVSQFPSSAKLRLPMRPQVRSLNLSSSATAAMY 157


>gi|90407127|ref|ZP_01215315.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
 gi|90311703|gb|EAS39800.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
          Length = 247

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 15/164 (9%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT----KRYSP 170
            L  A   + TL  + + +L++VLD V DP N+G I+R A  +    I+ +      Y+P
Sbjct: 89  VLVVAKCKTATLPTIASQELILVLDQVGDPGNLGTIIRVADWYGVKNIVCSPDCADFYNP 148

Query: 171 SE-SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +A +   A   + H P +       A+Q+   +G    G        L Q       
Sbjct: 149 KVIAASMGSFARINVSHTPLVEYL----AIQEKPIFGAYLEG------SNLHQCALPKSA 198

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +++G+E  G+  + +   +    +   G  ++LNV+ A  + L
Sbjct: 199 FIVMGSESHGISDELEHLISDKITIPNFGAAESLNVAMATGIIL 242


>gi|254422310|ref|ZP_05036028.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196189799|gb|EDX84763.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 269

 Score = 37.4 bits (85), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 1/141 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++L+ + DP N+G I+R++     DG+  +          + +++ G    +P   + 
Sbjct: 116 LGVILETLQDPGNLGTIIRTSAGVGSDGLWLSHDSVDLGHPKVLRASVGQWFRMPMATV- 174

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ +    +   G Q +  ++ ++    Q         ++G EG GL       A+    
Sbjct: 175 DVVEQASTLRQNGVQVVATTAAAELDYWQLDLQRPTVFLMGNEGAGLSDALMACASVTVK 234

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + +   +++LNV+ + A+ LY
Sbjct: 235 IPVAPEVESLNVAISTALLLY 255


>gi|308176006|ref|YP_003915412.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307743469|emb|CBT74441.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 218

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 125 TLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVL 176
           T+DA+      R     + +++     NIG ++RSA AF      II  +R++   + V 
Sbjct: 54  TMDAIIADLDERRHDFHIAIENWQHDMNIGTVVRSANAFLAKEVHIIGRRRWNRRGAMVT 113

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILG 234
            +      +H+ +   + + + +      G   +G+    DS  PLE         L+ G
Sbjct: 114 DR-----YQHVRHH--ATVEEFVAWAQEAGLTILGIDIFPDSV-PLETYDLPKNCVLVFG 165

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            EG GL P+    A     +   G  +++N ++AA +A++
Sbjct: 166 QEGPGLSPEVHAAAKDTLSIEQFGSTRSINAASAAGIAMH 205


>gi|269961010|ref|ZP_06175379.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834229|gb|EEZ88319.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 285

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P +   +   L++ LD V+DP N+G I+R A  +    II +      Y+P       K+
Sbjct: 133 PNVTVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KT 185

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     +++S L D    +        G   + +   + E   + I L++G+E  G
Sbjct: 186 ISATMGSFGRVQVS-LVDLPSYLEDANLPVYGAFLEGESVHKTEFSAEGI-LLMGSESHG 243

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R    +  T    +   G  ++LNV+ A  + L
Sbjct: 244 VREAASKFVTDKITIPAFGGAESLNVAMATGIIL 277


>gi|226320776|ref|ZP_03796332.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
 gi|226233831|gb|EEH32556.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
          Length = 218

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R + L  VL+ +    N  A +R+        +   ++   ++  +      G+ + I
Sbjct: 29  SLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +   
Sbjct: 87  NLNKYRNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     + M G  ++ N+S A A+ +Y
Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMY 174


>gi|115462009|ref|NP_001054604.1| Os05g0141400 [Oryza sativa Japonica Group]
 gi|46391115|gb|AAS90642.1| putative OBP33PEP [Oryza sativa Japonica Group]
 gi|113578155|dbj|BAF16518.1| Os05g0141400 [Oryza sativa Japonica Group]
 gi|215701017|dbj|BAG92441.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741370|dbj|BAG97865.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630148|gb|EEE62280.1| hypothetical protein OsJ_17068 [Oryza sativa Japonica Group]
          Length = 224

 Score = 37.4 bits (85), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-H 203
           HN+G + RSA AF    ++   R   S     A  + GA  H+ +   ++L  A   +  
Sbjct: 22  HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFASLPLARAYLKD 76

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK 261
             G    G+  + +  P+         A + G EG GL  K  E      ++    G   
Sbjct: 77  ERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTA 136

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AA++ L+
Sbjct: 137 SLNVTVAASIVLH 149


>gi|225549196|ref|ZP_03770169.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
 gi|225370054|gb|EEG99494.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
          Length = 218

 Score = 37.4 bits (85), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R + L  VL+ +    N  A +R+        +   ++   ++  +      G+ + I
Sbjct: 29  SLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +   
Sbjct: 87  NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     + M G  ++ N+S A A+ +Y
Sbjct: 147 AADLYVKIPMHGFTQSYNISVAVAIVMY 174


>gi|172041466|ref|YP_001801180.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852770|emb|CAQ05746.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 243

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/146 (20%), Positives = 63/146 (43%), Gaps = 6/146 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L + +++  +  NIG ++R+A AF+ D +    R   +    +       LEH  +
Sbjct: 90  RRHELHIAIENFENDANIGTVVRTANAFAVDTVHIVGRKRWNRRGAMVTDRYQHLEH--H 147

Query: 190 IRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             ++ + D   +        + + ++    PLE      +  L+ G EG G+  + Q  A
Sbjct: 148 KTVAEVLDYAAEQD---LAVVAVDNTPGSVPLETAELPRRCLLLFGQEGPGVTEEAQRGA 204

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   G  +++N   AA +A++
Sbjct: 205 RMTVSIAQFGSTRSINAGVAAGIAMH 230


>gi|15594398|ref|NP_212186.1| spoU protein (spoU) [Borrelia burgdorferi B31]
 gi|218249703|ref|YP_002374583.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
 gi|221217482|ref|ZP_03588953.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
 gi|224533884|ref|ZP_03674469.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|225549731|ref|ZP_03770696.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
 gi|226322036|ref|ZP_03797561.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
 gi|3915341|sp|O51081|Y052_BORBU RecName: Full=Putative tRNA/rRNA methyltransferase BB_0052
 gi|2687923|gb|AAC66431.1| spoU protein (spoU) [Borrelia burgdorferi B31]
 gi|218164891|gb|ACK74952.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
 gi|221192760|gb|EEE18976.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
 gi|224512887|gb|EEF83253.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|225369691|gb|EEG99139.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
 gi|226232626|gb|EEH31380.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
          Length = 218

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R + L  VL+ +    N  A +R+        +   ++   ++  +      G+ + I 
Sbjct: 30  LRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWIN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +    
Sbjct: 88  LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLGA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G  ++ N+S A A+ +Y
Sbjct: 148 ADLYVKIPMYGFTQSYNISVAVAIVMY 174


>gi|256830648|ref|YP_003159376.1| tRNA/rRNA methyltransferase SpoU [Desulfomicrobium baculatum DSM
           4028]
 gi|256579824|gb|ACU90960.1| tRNA/rRNA methyltransferase (SpoU) [Desulfomicrobium baculatum DSM
           4028]
          Length = 158

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + D I ++LG E +GL P+    A  +  + + G ++++N++NAAAV LY
Sbjct: 90  FRADDI-IVLGPETRGLPPEVLHDAQDLIRIPIWGEVRSVNLANAAAVLLY 139


>gi|256833631|ref|YP_003162358.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256687162|gb|ACV10055.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 254

 Score = 37.4 bits (85), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 146 NIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           NIG+++R+A AF+   + I  KR      A++            Y  I +  DA Q    
Sbjct: 118 NIGSVVRTANAFAVAEVHIVGKRRWNRRGAMVTDR---------YQHIRHHEDA-QAFAQ 167

Query: 205 W----GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           W    G   IG+ + D   P+E         L+ G E  GL    QE + S+ H+   G 
Sbjct: 168 WAQDNGLTVIGIDNIDGSVPIEGFAFPRASVLVFGQESTGLTQPMQEVSQSVVHITQYGS 227

Query: 260 IKALN 264
            +++N
Sbjct: 228 TRSMN 232


>gi|284992366|ref|YP_003410920.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284065611|gb|ADB76549.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 213

 Score = 37.4 bits (85), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 40/147 (27%)

Query: 146 NIGAILRSAVAF-------------SCDGIITTKRYS-----PSESAVLAKSASGALEHI 187
           NIG ++R+A AF             +  G + T RY      P  +A++  + S  L   
Sbjct: 77  NIGTVVRTANAFLAAEVHIVGRRRWNRRGAMVTDRYQHVRHHPDVAALVTWARSDGL--- 133

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P + + NL  A                   +PLE E       L+ G EG GL  + ++ 
Sbjct: 134 PLLAVDNLPGA-------------------RPLETEPLPRACVLLFGQEGTGLSAEARDA 174

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A  +  +   G  +++N   AA +A++
Sbjct: 175 ADGVLSIAQFGSTRSVNAGVAAGIAMH 201


>gi|225552193|ref|ZP_03773133.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
 gi|225371191|gb|EEH00621.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
          Length = 218

 Score = 37.4 bits (85), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 3/148 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           + R + L  VL+ +    N  A +R+        +   ++   ++  +      G+ + I
Sbjct: 29  SFRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +   
Sbjct: 87  NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A     + M G  ++ N+S A A+ +Y
Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMY 174


>gi|332291128|ref|YP_004429737.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169214|gb|AEE18469.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 246

 Score = 37.4 bits (85), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 16/149 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSPSESAVLAKSASGALEHI 187
           S L ++LD V DP N+G I+R    F    ++    T   Y+P     + ++  G+L  +
Sbjct: 101 SGLTLLLDDVRDPGNLGTIIRLCDWFGIKQLVCSIGTVDCYNPK----VVQATMGSLTRV 156

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             I  +NL + L+      F T     D        +  + + +I+G E  G+  +T+  
Sbjct: 157 DVI-YTNLEEYLENDSREVFGTF---MDGTNIYNTSLPAEGV-IIMGNEANGISRETEAV 211

Query: 248 ATSMAHLHMPGIIK---ALNVSNAAAVAL 273
            ++   +   G ++   +LNV+ A A+ L
Sbjct: 212 VSNRIAIPRFGDLQETESLNVATATAICL 240


>gi|125550794|gb|EAY96503.1| hypothetical protein OsI_18405 [Oryza sativa Indica Group]
          Length = 168

 Score = 37.4 bits (85), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 8/133 (6%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-H 203
           HN+G + RSA AF    ++   R   S     A  + GA  H+ +   ++L  A   +  
Sbjct: 20  HNVGTLARSATAFGVAEVVVVGRRDVS-----AFGSHGATSHLRFRHFASLPLARAYLKD 74

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK 261
             G    G+  + +  P+         A + G EG GL  K  E      ++    G   
Sbjct: 75  ERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTA 134

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AA++ L+
Sbjct: 135 SLNVTVAASIVLH 147


>gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 274

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 12/154 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L+ VL HV DP N GA++R+A A   DG++ T+      +  + +S +G+L H+P    
Sbjct: 114 RLVAVLAHVRDPGNAGAVVRAADAAGADGVVLTRESVDVHNPKVVRSTAGSLFHLPVATG 173

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK------------NDKIALILGAEGKGL 240
           + L  A+  + + G   +      +  ++  +                 A + G E  GL
Sbjct: 174 AELPAAVAALRARGVTVLAADGTGEHDIDDLLDVAGAAPAGVPDLAAPTAWVFGNEAWGL 233

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           R + +  A ++  + + G  ++LN++ AA V LY
Sbjct: 234 RDEDRALADAVVRVPIRGRAESLNLATAATVCLY 267


>gi|308799147|ref|XP_003074354.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
 gi|116000525|emb|CAL50205.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
          Length = 249

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHI 187
           R  ++ +V  +V   HN+G ++RS  AF      +I +++++       A  + GA  H+
Sbjct: 29  RRPEMYVVAHNVAKRHNLGMMMRSCTAFDVKALVLIGSRKFN-------AFGSQGADAHV 81

Query: 188 PYIRISNLTDALQKMHSWGFQT--IGLS-SDSKKPLEQEIKNDKIALILG------AEGK 238
            +     L +A + + +    T  +G+   +S +P+E        A ++G      A+G 
Sbjct: 82  AFEHYETLREAREGLTAKRGVTRVLGVEIVESAEPIESHPFTGNTAFVMGNEARLDAQGH 141

Query: 239 GLRPKTQETATSMAHL--HMPGIIKALNVSNAAAVALY 274
           GL  + +       ++  + PG   +LNVS AA++ ++
Sbjct: 142 GLTEQQKAICDGFVYIRQYGPG-TASLNVSVAASIVMH 178


>gi|295676810|ref|YP_003605334.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
 gi|295436653|gb|ADG15823.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
          Length = 262

 Score = 37.4 bits (85), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 121 LLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           LL   LDA    R  Q  +VLD V D  N+G+ILRSA A   + +      + + S+ + 
Sbjct: 98  LLVEKLDAPPPERVEQNCLVLDGVQDAGNVGSILRSAAAAGIEHVFCAPGTAYAWSSKVL 157

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  GA  H   ++I    DA   +           S   + +     +  +A + G EG
Sbjct: 158 RSGMGA--HF-LLQIHEDVDASALIERLAVPIAITDSHGAEAIYDCDLSRPLAWVFGNEG 214

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+    ++  +    +  PG +++LNV+ AAAV ++
Sbjct: 215 AGVSQVWRDAVSLRVTIPQPGGMESLNVAAAAAVCVF 251


>gi|307207954|gb|EFN85513.1| Probable methyltransferase TARBP1 [Harpegnathos saltator]
          Length = 1333

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 6/145 (4%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPYIR 191
            L++V   V+ P N+G I R+   F    ++          +   L+ SA   +  I  + 
Sbjct: 1182 LIVVASLVSRPPNLGGIARTCEIFGVKSLVIANLDCVKDKDFQCLSVSAEKWINMIQ-VT 1240

Query: 192  ISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +  L   L +  S G+  +G   +++S   LE + +   I L+LG E  G+         
Sbjct: 1241 LHELQQYLLEKKSAGWSIVGAEQTANSINLLEAKFEKKTI-LVLGNEKDGIPANFIPLFN 1299

Query: 250  SMAHLHMPGIIKALNVSNAAAVALY 274
            +   +   G+I++LNV  AAA+ ++
Sbjct: 1300 TCVEIPQVGVIRSLNVHVAAAICIW 1324


>gi|327290181|ref|XP_003229802.1| PREDICTED: RNA methyltransferase-like protein 1-like [Anolis
           carolinensis]
          Length = 406

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++ D++ DP N+G ILRSA    C  ++  K    +    + ++  GA   +P   +S
Sbjct: 191 LSLICDNIRDPGNLGTILRSAAGAGCSRVLLVKGCVDAWEPKVLRAGMGAHFRLPI--VS 248

Query: 194 NL 195
           NL
Sbjct: 249 NL 250


>gi|149926571|ref|ZP_01914832.1| putative RNA methyltransferase [Limnobacter sp. MED105]
 gi|149824934|gb|EDM84148.1| putative RNA methyltransferase [Limnobacter sp. MED105]
          Length = 273

 Score = 37.0 bits (84), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 8/146 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           Q + +LD + DP N+G +LR+  A     +  +   +   S  + ++  GA   +     
Sbjct: 125 QDIALLDGIQDPGNVGTLLRNCAAAGVQQVALSDHSAWVWSDKVLRAGMGAQFGLQLYTE 184

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
            +L  AL    S     I +   S  P   ++ N  +      + G+EG+G+     + A
Sbjct: 185 LDLLQALSAAKS----KIPVRVTSLHPKSVDLFNADLKPAGVWVFGSEGQGVSQAWLDRA 240

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +     I++LNV +++AV L+
Sbjct: 241 SEHIRIPQSKTIESLNVGSSSAVCLF 266


>gi|226506254|ref|NP_001145273.1| hypothetical protein LOC100278565 [Zea mays]
 gi|195653915|gb|ACG46425.1| hypothetical protein [Zea mays]
          Length = 286

 Score = 37.0 bits (84), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 75/164 (45%), Gaps = 5/164 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPS 171
           LALE     + T+   R  +L++V   V    N+  + R+   F   G++   +      
Sbjct: 115 LALEARLHAAETIKQSRQ-ELIVVASLVERIPNLAGLTRTCEVFRAAGLVVADKSVLQDK 173

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIA 230
           +  +++ +A   L  +  + + ++   L++    G+  IGL   +   PL++    D+  
Sbjct: 174 QFRLISVTAEKWLP-VTEVPVDSVKAYLERKRGDGYSVIGLEQTANSMPLDRFGFPDRTV 232

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L+LG E +G+         +   +   G++++LNV  + A+A++
Sbjct: 233 LVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVW 276


>gi|313611167|gb|EFR85991.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Listeria
           monocytogenes FSL F2-208]
          Length = 59

 Score = 37.0 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +A+++G+EG G+    +E    + HL M G + +LN S AA++ LY
Sbjct: 3   LAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLY 48


>gi|269925885|ref|YP_003322508.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789545|gb|ACZ41686.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 267

 Score = 37.0 bits (84), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 71/144 (49%), Gaps = 1/144 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N+  ++VLD V+DP N+G +LRSA A     ++ ++  +   +    ++++GAL  + + 
Sbjct: 113 NAGPVLVLDRVSDPGNVGTLLRSAAAAGSAAVLLSEGSADPYNPKAVRASAGALFAVSFA 172

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            +    +  + +H+   +     SDS +           A+++G+E  GL  +    +T 
Sbjct: 173 -VLPWEEIHEVLHTVPKRFAAYYSDSSQAYYLADLCPPCAILVGSEASGLSHQALSLSTH 231

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              + M   I++LN + A ++ L+
Sbjct: 232 NLWIPMQNNIESLNAAVAGSILLF 255


>gi|284033331|ref|YP_003383262.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283812624|gb|ADB34463.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 279

 Score = 37.0 bits (84), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 11/189 (5%)

Query: 96  VPPQTIDKIVGKEAVH-----QGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGA 149
           VP   +D+  G EA+      QG+    + +  P  +AVR  + L+ V   V DP N G 
Sbjct: 75  VPWYEVDR-AGVEALSETVTSQGVVAVCSLVDVPLDEAVRRTASLVAVGVQVRDPGNAGT 133

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++R+A A   D ++ +       +    +++ G+L H+P     ++  A +     G Q 
Sbjct: 134 LIRTADAAGADAVVLSGESVDPHNPKAVRASVGSLFHLPIAVEVDIPAAAKSWRDQGVQV 193

Query: 210 IGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           +         L++ I +  +A     + G E  GL             + + G  ++LN+
Sbjct: 194 LAADGYGSVDLDECIDDGTLAKPTVWLFGNEAHGLPDGFDAIVDRSVKVPIYGRAESLNL 253

Query: 266 SNAAAVALY 274
           + AAAV LY
Sbjct: 254 ATAAAVCLY 262


>gi|317121670|ref|YP_004101673.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
 gi|315591650|gb|ADU50946.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
          Length = 273

 Score = 37.0 bits (84), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L++G EG G+ P+ Q  AT    + + G I +LNV+ A  + LY
Sbjct: 220 LVVGNEGAGVSPEVQRYATGRVAIPLAGGIGSLNVAMAGCILLY 263


>gi|216264824|ref|ZP_03436816.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
 gi|223889195|ref|ZP_03623784.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
 gi|215981297|gb|EEC22104.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
 gi|223885444|gb|EEF56545.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
 gi|312148144|gb|ADQ30803.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi JD1]
          Length = 218

 Score = 37.0 bits (84), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 3/147 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R + L  VL+ +    N  A +R+        +   ++   ++  +      G+ + I 
Sbjct: 30  LRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEK--KNKHTLNPDVTLGSSQWIN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +    
Sbjct: 88  LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLGA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G  ++ N+S A A+ +Y
Sbjct: 148 ADLYVKIPMHGFTQSYNISVAVAIVMY 174


>gi|254225060|ref|ZP_04918674.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125622447|gb|EAZ50767.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 257

 Score = 37.0 bits (84), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II ++     Y+P       K+
Sbjct: 105 PHIEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGISHIIASQDCADPYNP-------KT 157

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     +++S + D    +        G   +     +   K + I L++G+E  G
Sbjct: 158 ISATMGSFGRVQVSQV-DLPYYLAKANLPVYGAFLEGVSVHQTAFKAEGI-LLMGSESHG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 216 IREQAAQYVTDKITIPAFGGAESLNVAMATGIIL 249


>gi|114799377|ref|YP_761548.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114739551|gb|ABI77676.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 271

 Score = 37.0 bits (84), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 9/148 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L + L  V DP N+G ILR+A      G+I         S    +++ G++  +P+ 
Sbjct: 120 GTPLYIALYEVRDPGNLGTILRTADCAGVSGVILIGTCCDPYSFEAVRASMGSVFDVPFA 179

Query: 191 RISNLTDALQKMHSW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                TD     ++W    G      S +     +         +++G E  GL    + 
Sbjct: 180 H----TD-FDAFNTWRKGEGMSLTAASVNGTVRHDGADFTGGSIILMGNEQAGLPDWVEA 234

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
              +++ + M G   +LN++ A+A+ +Y
Sbjct: 235 ACDTLSLIPMRGGADSLNLAQASALMIY 262


>gi|309379967|emb|CBX21378.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 261

 Score = 37.0 bits (84), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP N+G +LRSA A     ++  K  + + S  + ++  GA         ++L
Sbjct: 115 VVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADL 174

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L       F T  L  + +  L  E   +    + G EG G+     + A     + 
Sbjct: 175 EIWLAHYKGRVFAT-ALREEKQAVLYNEDLREPTTWVFGNEGAGVGKAVLDRADKCVRIP 233

Query: 256 MPGIIKALNVSNAAAVALY 274
           M    ++LNV+ AA + L+
Sbjct: 234 MHDATESLNVAMAATICLF 252


>gi|327314524|ref|YP_004329961.1| TrmH family RNA methyltransferase [Prevotella denticola F0289]
 gi|326944905|gb|AEA20790.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289]
          Length = 242

 Score = 37.0 bits (84), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A ET+   S T       QL++ LD V DP N+G I+R A  F  D I  +   +   + 
Sbjct: 75  ADETSKDYSKTFHEHIEGQLVLALDGVQDPGNLGTIIRIADWFGIDDIFCSHETADCWNP 134

Query: 175 VLAKSASGALEHI 187
            + ++  G++  +
Sbjct: 135 KVVQATMGSIARV 147


>gi|225620368|ref|YP_002721625.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225215187|gb|ACN83921.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
          Length = 164

 Score = 37.0 bits (84), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 1/150 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  +++ L     P N G I R  V  +    I +K      S  + ++     EH+  +
Sbjct: 9   NFNIIIALYRPEIPANTGNIGRLCVGLNIPLHIVSKPSFIISSKEVKRAGLDYWEHLQLV 68

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
           +  N    L+  +S   + + ++   K   ++   ++   L+ G E  GLR    E    
Sbjct: 69  KHENENTFLEYCNSNNKRIVPITKFGKHRYDEFQYSNNDILLFGRESTGLRESLWENDLE 128

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  ++ M   I+++NVSN AA+  Y    H
Sbjct: 129 NSVYIPMSDNIRSINVSNTAAIVAYEAYRH 158


>gi|302307217|ref|NP_983802.2| ADL294Cp [Ashbya gossypii ATCC 10895]
 gi|299788893|gb|AAS51626.2| ADL294Cp [Ashbya gossypii ATCC 10895]
          Length = 1372

 Score = 37.0 bits (84), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 5/152 (3%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            DAV+ S L++V   V+ P N+G I R +      G++T               A  A   
Sbjct: 1215 DAVKRSDLIVVASLVDKPPNLGGICRLSDVLGV-GLMTVHDLRVKSHPQFKNVAVTADRW 1273

Query: 187  IPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI-LGAEGKGLRP 242
            +P   + ++++   +++    G+  IGL  +D    L+      + +LI LG E +G+  
Sbjct: 1274 MPIEEVAVADIASFMRQKKLEGYTLIGLEQTDKSVRLDAAFHFPRKSLILLGTEAEGIPG 1333

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                       +   G+I+++N+  A AV ++
Sbjct: 1334 YLLVELDMCLEIKQHGVIRSMNIQTATAVVVH 1365


>gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
 gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
          Length = 225

 Score = 37.0 bits (84), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 13/146 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L    +P+NIGA  R+   F    +     + P+     A++A GA + +   +I  N
Sbjct: 4   IILVKPRNPNNIGASARAMANFGLSDLRIAGAHIPNLEE--AQAAVGAEDLLKKAKIFDN 61

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQET 247
           L DAL   + + F    L + + +        +   IK  KIA++ G+E  GL  K  E 
Sbjct: 62  LQDALADCN-FAFAATSLKNRNTQKEIVSLPNINNHIKRGKIAVVFGSEKTGLSVKDIEL 120

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
             ++  L++P   K  +V+ A AV L
Sbjct: 121 CDAV--LNIPTTTKQPSVNLAQAVNL 144


>gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708]
 gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708]
          Length = 270

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ ++ + DP N+G ++R+A A    G+  +      ++  + ++++G    +      
Sbjct: 118 LVLGVETLQDPGNLGTMIRAAAAAGASGLWLSDDSVDLDNPKVLRASAGQWFRLDKAVSP 177

Query: 194 NLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +L   +Q+    G Q I  L + S    E + +   + ++LG EG GL       A +  
Sbjct: 178 DLKATVQQCQQAGMQVIATLPTASLTYWEVDWRKPSL-ILLGNEGAGLSDDLAAMADTQV 236

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + +   + +LNV+ AAA+ LY  Q  
Sbjct: 237 KIPLNPGVDSLNVAIAAALMLYEAQRQ 263


>gi|239942624|ref|ZP_04694561.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239989083|ref|ZP_04709747.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           11379]
          Length = 233

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 39/156 (25%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF-------------SCDGIITTKRYSP-- 170
           LD  R+   + V +  +D  NIG+++R+A AF             +  G + T RY    
Sbjct: 74  LDLRRHDFHVAVENWTHD-FNIGSVVRTANAFLAKEIHIVGRRRWNRRGAMVTDRYQHVR 132

Query: 171 --SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             S++A L   A+   E +P I I NL  A+                   PLE+     +
Sbjct: 133 HHSDTADLTAWATA--EGLPIIGIDNLPGAV-------------------PLERTELPRR 171

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             L+ G EG GL  + +E AT++  +   G  +++N
Sbjct: 172 CVLLFGQEGPGLTEEAREHATAVCSIAQFGSTRSIN 207


>gi|153834733|ref|ZP_01987400.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
 gi|148868872|gb|EDL67936.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
          Length = 244

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P +   +   L++ LD V+DP N+G I+R A  +    II +      Y+P       K+
Sbjct: 92  PNVTVPQAKGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     +++S L D    +        G   + +   + E   + I L++G+E  G
Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEDANLPVYGAFLEGESVHKTEFSAEGI-LLMGSESHG 202

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R    +  T    +   G  ++LNV+ A  + L
Sbjct: 203 VREAASKFVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|261252040|ref|ZP_05944614.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
 gi|260938913|gb|EEX94901.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
          Length = 244

 Score = 36.6 bits (83), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 22/247 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +  +    LFL         L N S K+ Q+ AT   L   +    L H 
Sbjct: 8   KLLRALGQKKQRKAH--GLFLVQGEKNVLELANSSLKVKQVFATAEFLT--EHQGELGH- 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
              + +     D       V    A+    +  P+++  +   L++ LD V+DP N+G I
Sbjct: 63  --FECIEASLDDLTKASTLVSNNAAIAVVEI--PSIEIPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +R A  +    I+ +      Y+P       K+ S  +     + +S L D    +    
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNP-------KTISATMGSFGRVTVSQL-DLPSYLEQSN 170

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G   + +     +   + I L++G+E  G+R +  +  T    +   G  ++LNV+
Sbjct: 171 LPVYGAFLEGESVHRTDFAAEGI-LLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVA 229

Query: 267 NAAAVAL 273
            A  + L
Sbjct: 230 MATGIIL 236


>gi|163789140|ref|ZP_02183583.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
           ALC-1]
 gi|159875553|gb|EDP69614.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
           ALC-1]
          Length = 218

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEH 186
           A R     +  + V   HN  A++RS   F   GI          S  + +  A GA + 
Sbjct: 27  AQRTKHFTVATEDVYQLHNASAVMRSCDVF---GIQELNIVEEVNSKSIDREIAMGAQKW 83

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +   R  +    +  + + G+Q +  +  ++    ++ +I   K     G E +GL  + 
Sbjct: 84  VDLNRFHSTKSCIDHLKTKGYQIVATTPHAEDCDLIDFDITK-KSCFFFGRETEGLSQQV 142

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + A     + M G  ++LN+S +AA+ L
Sbjct: 143 IDEADCFLKIPMVGFTESLNISVSAAIIL 171


>gi|187478243|ref|YP_786267.1| RNA methyltransferase [Bordetella avium 197N]
 gi|115422829|emb|CAJ49357.1| putative RNA methyltransferase [Bordetella avium 197N]
          Length = 257

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 16/146 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEHIPY 189
           ++LD + DP N+G +LR+  A            + + S  + +S  GA       EH+  
Sbjct: 114 VLLDRIQDPGNVGTLLRTCAAAGIRQAFLATGTAAAWSPKVLRSGQGAHFAMDIHEHVDL 173

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             +S   D    + +          D    L        +A + G EG+G+ P  Q  A 
Sbjct: 174 HALSARLDVPLAVTTL---------DDATSLYDTALPASLAWVFGHEGQGVDPALQAQAA 224

Query: 250 SMAHL-HMPGIIKALNVSNAAAVALY 274
               + H    +++LNV  AAA+ L+
Sbjct: 225 LRLRIPHDMQAVESLNVGAAAAICLF 250


>gi|330467003|ref|YP_004404746.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328809974|gb|AEB44146.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 265

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 16/185 (8%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +TV PQ      G  AV Q L +  A  LS      R  +L+ VL  + DP N G +LR+
Sbjct: 86  ETVAPQ------GLVAVCQHLDVPLATALS------RGPRLVGVLAGIRDPGNAGTVLRT 133

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     ++         +    +S++G+L H+  +R  +    +    + G   +  +
Sbjct: 134 ADAAGAAAVVFAGEAVDPYNGKCVRSSAGSLFHVDVVRERDPAAVVDAARAAGLVVLAAT 193

Query: 214 SDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
              +  L+      ++A+    + G+E  GL  +    A +   + + G  ++LN++ AA
Sbjct: 194 GYGEADLDDLADAGRLAVPTAWLFGSEAHGLPDELIAAADARVRVPLHGRAESLNLAAAA 253

Query: 270 AVALY 274
           AV LY
Sbjct: 254 AVCLY 258


>gi|153838665|ref|ZP_01991332.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
 gi|149747943|gb|EDM58809.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
          Length = 244

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L++ LD V+DP N+G I+R A  +    II +      Y+P       K+ S  +     
Sbjct: 102 LMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KTISATMGSFGR 154

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +++S L D    +        G   + +   + E   + I L++G+E  G+R +  +  T
Sbjct: 155 VQVS-LVDLPSYLAEANLPVYGAFLEGESVHKTEFSAEGI-LLMGSESHGVREEASKFVT 212

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               +   G  ++LNV+ A  + L
Sbjct: 213 DKITIPAFGGAESLNVAMATGIIL 236


>gi|313159202|gb|EFR58575.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 251

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 78/166 (46%), Gaps = 7/166 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V+TV P+ ++++   +     LA+   P     + ++   +L + LD V +P N+G I+R
Sbjct: 57  VETVAPRDMERLSLLKTAANSLAIVETPRYGLDMRSL-AGRLTLALDDVQNPGNLGTIVR 115

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
            A  F    I+ ++  +   +  + ++  GA+  +  +  ++L   L    + G    G 
Sbjct: 116 LADWFGIADIVCSEASADCFNPKVVQATMGAILRV-RVHYTDLGAFLHDAGAAGLPVYGT 174

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH-LHMP 257
             + +      +  + + +++G EG+G+   +Q  A ++ H L +P
Sbjct: 175 FLEGENIYGTTLTEEGV-VVMGNEGRGI---SQAAARAVTHKLFIP 216


>gi|291515298|emb|CBK64508.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 251

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V+TV P+ ++++   +     LAL   P      + +R  +L + LD V +P N+G I+R
Sbjct: 57  VETVAPRDMERLSQLKTPSNSLALVEIPRCDLKPERLRG-RLTLALDDVQNPGNLGTIIR 115

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
            A  F    I+ ++  +   +  + ++  GA+  +  +  ++L   L K  + G    G 
Sbjct: 116 LADWFGITDIVCSEASADCFNPKVVQATMGAILRV-RVHYTDLAALLSKAAALGLPVCGT 174

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             +     E E+K   I +++G EG+G+      T T
Sbjct: 175 FLEGANIYETELKPAGI-VVMGNEGRGITDAVARTVT 210


>gi|291446085|ref|ZP_06585475.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291349032|gb|EFE75936.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 222

 Score = 36.6 bits (83), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 39/156 (25%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF-------------SCDGIITTKRYSP-- 170
           LD  R+   + V +  +D  NIG+++R+A AF             +  G + T RY    
Sbjct: 63  LDLRRHDFHVAVENWTHD-FNIGSVVRTANAFLAKEIHIVGRRRWNRRGAMVTDRYQHVR 121

Query: 171 --SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             S++A L   A+   E +P I I NL  A+                   PLE+     +
Sbjct: 122 HHSDTADLTAWATA--EGLPIIGIDNLPGAV-------------------PLERTELPRR 160

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             L+ G EG GL  + +E AT++  +   G  +++N
Sbjct: 161 CVLLFGQEGPGLTEEAREHATAVCSIAQFGSTRSIN 196


>gi|302847769|ref|XP_002955418.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
           nagariensis]
 gi|300259260|gb|EFJ43489.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
           nagariensis]
          Length = 162

 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IR 191
           +L+V   ++   N+  + R+       G +     + +   V    +  A + +P   ++
Sbjct: 1   VLLVASLIDKLPNLAGLARTCEVMGA-GRLVLADLAATRDPVFTSVSVTAEQWLPMEEVK 59

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATS 250
            + L   L++  + G+  +GL   ++     + +   K+ L+LG E +G+ P+      +
Sbjct: 60  PAALLAWLERRAAEGYTLVGLEQTAQSVRLPDYRWPAKVVLVLGREKEGIPPEVLSLLDA 119

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280
              +   GII++LNV  + A+AL  Y+ Q  F
Sbjct: 120 TLEIPQRGIIRSLNVHVSGAIALYEYVRQMQF 151


>gi|227876391|ref|ZP_03994503.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227842932|gb|EEJ53129.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 197

 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 49/216 (22%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           N P R  F+  +     A+LDW+ N PHP                              L
Sbjct: 17  NVPDR--FRYWSNAAITAQLDWELN-PHP----------------------------EDL 45

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179
            +P L+        + ++++    NIG+I+R+A         I+  +R++   + V  + 
Sbjct: 46  SAPCLE--------IAVENIGHDFNIGSIIRTANGLGVRQVHILGRRRFNRRGAMVTDRY 97

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGK 238
                  +P    +  T A +K        +G+ +    + LE      +  +I G E  
Sbjct: 98  LHLQFHEVP---AALATYAAEK----ALTIVGMDNLPGAENLESCELPRRCLMIFGEESS 150

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+ P TQE    +  +   G  ++LNV +AAA++++
Sbjct: 151 GITPATQEILDHLIQITQYGSTRSLNVGHAAAISMW 186


>gi|291533985|emb|CBL07098.1| rRNA methylases [Megamonas hypermegale ART12/1]
          Length = 126

 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 7/113 (6%)

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--KMHSWGFQTIGLSSDSKKPLE 221
           T   YSP     + +SA G+L ++P I   +  D L   + H+       L + +K    
Sbjct: 12  TADIYSPK----VVRSAMGSLFNLPIITKISEQDLLSFCQNHNLTLYATALDNSAKASWN 67

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                D  A+ILG E  G+     +   +  ++ M G  ++LNV+NA ++ +Y
Sbjct: 68  ISYPQD-CAIILGNEANGVSDNLLDKCNAKIYIPMKGDAESLNVANAGSMIMY 119


>gi|239946879|ref|ZP_04698632.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921155|gb|EER21179.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 189

 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 32/172 (18%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTK----------RYSPSES 173
           +   R   L+ V+++ ++  NIGAI+R+  A       I+T +          R  P  +
Sbjct: 18  IKEFRCKNLIAVIENPDNIKNIGAIIRNVNALGIKKAYIVTNQKLLPDTWEEMRKEPKLN 77

Query: 174 AV-----------LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           A+           + K  +  ++H+      +    +   H  G++ + L          
Sbjct: 78  AISVSDIKWSFVKIFKDTNSCMDHLEK---ESFVSVITSPHIKGYKNVVLHK------HD 128

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K  K+A+  G EG G+     + ++   ++ M GII++LN+  ++ + LY
Sbjct: 129 YTKYKKLAVWFGNEGVGISKTAVKRSSFCINIPMYGIIESLNLGTSSGIVLY 180


>gi|149237384|ref|XP_001524569.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452104|gb|EDK46360.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 934

 Score = 36.6 bits (83), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 5/147 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-- 189
           S L++V   V+ P N+G I R +      G++T      ++       A  A + +P   
Sbjct: 782 SDLIVVASLVDKPPNLGGICRLSDVLGV-GLLTIHDMEVAKHPQFKNVAVTADQWMPMHE 840

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQET 247
           ++   + + L +    G+  IGL  +D    L + ++  K +LIL G E +G+  +    
Sbjct: 841 VKPEEIKNYLLEKKRDGYTLIGLEQTDKSVQLNKNLEFPKKSLILLGKEKEGIPGELLAE 900

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +   GII+++N+  AAA+ ++
Sbjct: 901 LDFCVEIKQVGIIRSMNIQTAAAIIVH 927


>gi|317503287|ref|ZP_07961339.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606]
 gi|315665593|gb|EFV05208.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606]
          Length = 250

 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           H    L   P      D +  S L ++LD V DP N+G I+R A  F  + I  +   + 
Sbjct: 79  HPQQVLGVFPFFQTGNDTIDISALTLMLDGVQDPGNLGTIIRIADWFGINDIFCSHETAD 138

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  + ++  G++  +    +S L   L+++    +   G   +     ++++  + + 
Sbjct: 139 LYNPKVVQATMGSITRVRLHYVS-LVSVLKQLPE-DYPIYGTLLEGNNIYDEQLSTNGL- 195

Query: 231 LILGAEGKGLRPKTQE 246
           +I+G EG G+  + ++
Sbjct: 196 IIMGNEGNGISTEIRQ 211


>gi|328950244|ref|YP_004367579.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450568|gb|AEB11469.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
          Length = 263

 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 5/164 (3%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVND--PHNIGAILRSAVAFSCDGIITTKRYSP 170
           GL L   P   P L+A+       VL  VN   P N+GAILRSA A     ++       
Sbjct: 94  GLVLVARPSF-PRLEALDPPPHAPVLVAVNPEKPGNLGAILRSADAAGAGAVVAVGGVDL 152

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
               V+ +S++G +  +P    S+   AL  + + G + +  S  ++    +      +A
Sbjct: 153 MNPNVI-RSSTGVVFTLPTAAASS-EAALDWVRARGRRLVAASPHAETSYWEVDLTGAVA 210

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +G E  GL P+  E A     + M G   +LNVS +AA+ LY
Sbjct: 211 IAVGPEHAGLPPEWLEAADVRVRIPMCGRADSLNVSVSAALLLY 254


>gi|77166275|ref|YP_344800.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
           19707]
 gi|254435470|ref|ZP_05048977.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
           AFC27]
 gi|76884589|gb|ABA59270.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
           19707]
 gi|207088581|gb|EDZ65853.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
           AFC27]
          Length = 161

 Score = 36.6 bits (83), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + +  D  Q    W   T G     ++P ++   +   AL+ G E +GL  +  ET  S 
Sbjct: 63  LEHFLDKTQPRQLWACSTRG-----QQPYDKANFHPGDALLFGPETRGLPRELLETLLSR 117

Query: 252 AHLHMP--GIIKALNVSNAAAVALY--ITQNHFAK 282
             L +P     ++LN+SNA AV LY    Q  FAK
Sbjct: 118 QVLRIPMEPTSRSLNLSNAVAVVLYEAWRQQGFAK 152


>gi|298714780|emb|CBJ25679.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 363

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSESAVLAKSASGALE 185
           R     +V ++  +P+N+ A LR+  +F   GI    I +   + S+ A L K+   A+ 
Sbjct: 150 RTRSATLVFENPANPNNVWACLRTLDSF---GIQHAHIVSDPSTYSKQARL-KTMCTAMG 205

Query: 186 HIPYIRI---SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLR 241
              ++ +       DA+ K+ + G+Q +    S S  P+ +   +   A++LG E +G+ 
Sbjct: 206 SQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVPTAVVLGNEERGIS 265

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              ++ A +   + M G +++ N+S A ++ L
Sbjct: 266 DSMRDMADATFVIPMRGFVRSFNMSVACSIIL 297


>gi|203283978|ref|YP_002221718.1| spoU protein [Borrelia duttonii Ly]
 gi|203287521|ref|YP_002222536.1| spoU protein [Borrelia recurrentis A1]
 gi|201083421|gb|ACH93012.1| spoU protein [Borrelia duttonii Ly]
 gi|201084741|gb|ACH94315.1| spoU protein [Borrelia recurrentis A1]
          Length = 218

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 9/149 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSA--VAFSCDGII-TTKRYSPSESAVLAKSASGALEH 186
           R + L +VL+ +    N  A +R+   +  S   II T  +Y+ +   VL  S    +  
Sbjct: 31  RTNYLTLVLEDIFQSQNASATMRTIEILGLSNIHIIETNNKYTLNPGVVLGASKWIGINK 90

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
              +++     A + + + G++ +  S D++   LE    + K+A+  G E  GL     
Sbjct: 91  YKCVKV-----AFEHLKANGYKIVATSLDNEAISLEDFPIDTKMAVFFGTELTGLSHTIL 145

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + A     + M G  ++ N+S A A+  Y
Sbjct: 146 QNADLHLKIPMYGFTQSYNLSVAVAIVFY 174


>gi|332876719|ref|ZP_08444477.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332685278|gb|EGJ58117.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 260

 Score = 36.6 bits (83), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 9/154 (5%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            QL + LD V DP N+G I+R A  F  + I  +   +   +    ++  GA+  +  + 
Sbjct: 108 EQLCLGLDGVQDPGNLGTIIRIADWFGIEHIFCSPDTADLYNPKTVQATMGAMARV-CVH 166

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +LTD L+  ++      G   D       E+  + + +++G EGKG+   +++ A+ +
Sbjct: 167 YLSLTDLLRTANA-DIPVYGTFLDGNDMYGTELSPNGL-IVMGNEGKGI---SRDVASLI 221

Query: 252 AH-LHMPGIIKALNVSNA--AAVALYITQNHFAK 282
              L++P      N S +   AVA  I    F +
Sbjct: 222 NRKLYIPNYPPERNTSESLNVAVATAIVCAEFRR 255


>gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
 gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
          Length = 237

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRI---SNLTDALQK 201
           N+G I+R    F  D +I  K +  P    V   +A+GA+ +I   ++    NL DAL+ 
Sbjct: 14  NLGFIVRLCRNFDVDELILVKPQIDPFSDEVRRFAANGAI-YIDSGKVKIYENLDDALRG 72

Query: 202 MHSWGFQTIGLSSDS----KKPLEQE------IKNDKIALILGAEGKGLRPKTQETATSM 251
           +   G  +  +  D     +K +E E       K   IA++ G E  GL  +       +
Sbjct: 73  IGISGCTSSVIDVDGGDIVRKAIELEEFANIASKYSSIAVVFGRESVGLTREEISKCDFL 132

Query: 252 AHLHMPGIIKALNVSNAAAVALYI 275
            H+        LN+S+A A+ LY+
Sbjct: 133 VHIASNPEYPVLNLSHAVAITLYM 156


>gi|154488135|ref|ZP_02029252.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis
           L2-32]
 gi|154083608|gb|EDN82653.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis
           L2-32]
          Length = 304

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P+E     ++  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++
Sbjct: 238 PMETYHFPERCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMH 293


>gi|291514444|emb|CBK63654.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 178

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +VLD+V    N+GA  R+  AF+ + I+     +   S  + K+A GA   +P+   +
Sbjct: 25  VTVVLDNVRSAQNVGAFFRTGDAFAVERIVLCGITATPPSRDIHKTALGAEMTVPWSYCA 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGL 240
           +    + ++ + G+    +       +    +     K AL+ G E  G+
Sbjct: 85  STVGCIAQLRAEGYAVYAVEQVEGAVMLDAFRAAPGVKYALVFGNEVDGV 134


>gi|50289637|ref|XP_447250.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526559|emb|CAG60183.1| unnamed protein product [Candida glabrata]
          Length = 1420

 Score = 36.6 bits (83), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 19/157 (12%)

Query: 129  VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITT-----KRYSPSESAVLAKS 179
            ++ S+L++V   V+ P N+G I R      CD    G++T      K +   ++  +   
Sbjct: 1265 IKRSELIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDLRVKNHPQFKNVAVTAD 1319

Query: 180  ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-DKIALILGAEG 237
                +E +P   IS      +K    G+  IGL  +D    L+   K   K  ++LG E 
Sbjct: 1320 KWMPMEEVPIDEISKFMKEKKKE---GYTLIGLEQTDKSIKLDNNFKFPSKSLILLGTEA 1376

Query: 238  KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             G+             +   G+I+++N+  A AV ++
Sbjct: 1377 HGIPGHLLNELDLCLEIKQHGVIRSMNIQTATAVIVH 1413


>gi|261338711|ref|ZP_05966595.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM
           20093]
 gi|270276265|gb|EFA22119.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM
           20093]
          Length = 273

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           PLE+    ++  ++ GAEG GL  K  + A  + ++   G ++++N   AAAV+++
Sbjct: 204 PLERYEFPERCLMLFGAEGPGLSSKALDLADDVVYISQFGSVRSINAGAAAAVSMH 259


>gi|323494049|ref|ZP_08099165.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
 gi|323311676|gb|EGA64824.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
          Length = 244

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P+++  +   L++ LD V+DP N+G I+R A  +    I+ +      Y+P       K+
Sbjct: 92  PSVEVPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASTDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     + +S L D    +        G   + +     E     I L++G+E  G
Sbjct: 145 ISATMGSFGRVTVSQL-DLPAYLEQANLPVYGAFLEGESVHRTEFSAQGI-LLMGSESHG 202

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 203 VREQAAKFVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|299140862|ref|ZP_07034000.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
 gi|298577828|gb|EFI49696.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
          Length = 250

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 70  QLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV-HQGLALETAPLLSPT 125
           +LLA   A   +A  +W AN   P P   V   T D++     + H    L   P  +  
Sbjct: 35  ELLAMSRAHTLVATQEWLANHSAP-PADEVIEVTSDELRKVSLLQHPQQVLGLFPFFASD 93

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             A+  S L ++LD + DP N+G I+R A  F  + I  ++  +   +  + ++  G++ 
Sbjct: 94  THAINTSTLSLMLDGIQDPGNLGTIIRIADWFGINDIYCSQETADMYNPKVIQATMGSIT 153

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +  +    L   L+++ +  F   G   +      +++    + +I+G EG G+  + +
Sbjct: 154 RV-RLHYGALEPMLRQLPA-DFPIYGTLLEGNDIYSEQLSAHGL-IIMGNEGNGISAQVR 210

Query: 246 E 246
           +
Sbjct: 211 Q 211


>gi|269975955|ref|ZP_06182959.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|306817283|ref|ZP_07451029.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|269935783|gb|EEZ92313.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|304649963|gb|EFM47242.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 222

 Score = 36.6 bits (83), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179
           L+P  + +    L + ++++    NIG+I+R+A         I+  +R++   + V  + 
Sbjct: 63  LNPHPEDLSAPCLEIAVENIGHDFNIGSIIRTANGLGVRQVHILGRRRFNRRGAMVTDRY 122

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGK 238
                  +P    +  T A +K        +G+ +    + LE      +  +I G E  
Sbjct: 123 LHLQFHEVP---AALATYAAEK----ALTIVGMDNLPGAENLESCELPRRCLMIFGEESS 175

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+ P TQE    +  +   G  ++LNV +AAA++++
Sbjct: 176 GITPATQEILDRLIQIAQYGSTRSLNVGHAAAISMW 211


>gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
 gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 16/159 (10%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++  Q+ +VL     P NIG++ R+ + F   G       +P  +     +   AL  +P
Sbjct: 1   MKKQQITVVLVEPQGPLNIGSVCRAMMNF---GFSQLCLVNPCTTFNNLDARKMALSALP 57

Query: 189 YIR----ISNLTDALQKMH-SWG-------FQTIGLS-SDSKKPLEQEIKNDKIALILGA 235
            +     +  L  AL+  H ++G       ++   LS  D  + L +E   ++ AL++G 
Sbjct: 58  ILEKAVVVDTLAQALKNCHLAFGTTRRFGKYRQDFLSPEDFGRTLAEEPDTNQCALVMGR 117

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E  GL     E       +       ++N+S+A A+ LY
Sbjct: 118 EDHGLYTSELELCQRFVTIPTENAYGSMNLSHATALLLY 156


>gi|224138732|ref|XP_002326676.1| predicted protein [Populus trichocarpa]
 gi|222833998|gb|EEE72475.1| predicted protein [Populus trichocarpa]
          Length = 1224

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 6/155 (3%)

Query: 125  TLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            T++ +R S  Q ++V   ++   N+  + R+   F   G+         +      S + 
Sbjct: 1062 TMEKIRASRQQFILVASLLDRIPNLAGLARTCEVFKVSGLAIADASILRDKQFQLISVT- 1120

Query: 183  ALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKG 239
            A + +P I +  +++   L+K    GF  +GL   +   PL+      K  L+LG E +G
Sbjct: 1121 AEKWVPIIEVPVNSVKHFLEKKKRDGFSILGLEQTANSVPLDHHAFPKKTVLVLGREKEG 1180

Query: 240  LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +         +   +   G++++LNV  + A+AL+
Sbjct: 1181 IPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALW 1215


>gi|307700467|ref|ZP_07637506.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|307614452|gb|EFN93682.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 222

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKS 179
           L+P  + +    L + ++++    NIG+I+R+A         I+  +R++   + V  + 
Sbjct: 63  LNPHPEDLSAPCLEIAVENIGHDFNIGSIIRTANGLGVRQVHILGRRRFNRRGAMVTDRY 122

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGK 238
                  +P    +  T A +K        +G+ +    + LE      +  +I G E  
Sbjct: 123 LHLQFHEVP---AALATYAAEK----ALTIVGMDNLPGAENLESCELPRRCLMIFGEESS 175

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+ P TQE    +  +   G  ++LNV +AAA++++
Sbjct: 176 GITPATQEILDRLIQITQYGSTRSLNVGHAAAISMW 211


>gi|189199908|ref|XP_001936291.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983390|gb|EDU48878.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 388

 Score = 36.6 bits (83), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 50/223 (22%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           PV ++  QTI   +  +A   G+ L+       P   P++   R + ++M+   +++P N
Sbjct: 166 PVVSIADQTIQTTLQTKA---GIDLDNLHPQNGP---PSMQNQRPASVMMIASLIDNPTN 219

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG----ALEHIPYIRI-SNLTDALQK 201
           +G + R + +F  + +        +     A S       A+  +  + + + L DA  K
Sbjct: 220 LGGLSRISESFGLEALYIDNLKKAAHKDFKATSVRSEKHLAIRELKEVGVPAFLLDAKSK 279

Query: 202 MHSWGFQTIGL-------------SSDSKKPL---------------EQEIKN--DKIAL 231
               G++ +G+             SSD K+ L                Q+I     K  L
Sbjct: 280 ----GYEVVGIEQTDRSGILGHEDSSDQKEILTGDKSAGGQSTHVIRSQDIGTLPKKCCL 335

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +LG+E +G+  +          +   G+ ++LNV  A  +ALY
Sbjct: 336 VLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQTAGGIALY 378


>gi|325855522|ref|ZP_08171859.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
 gi|325483805|gb|EGC86764.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
          Length = 242

 Score = 36.6 bits (83), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A ET+   S T       QL++ LD V DP N+G I+R A  F  D I  +   +   + 
Sbjct: 75  ADETSKDYSRTFHEHIEGQLVLALDGVQDPGNLGTIIRIADWFGIDDIFCSHETADCWNP 134

Query: 175 VLAKSASGALEHI 187
            + ++  G++  +
Sbjct: 135 KVVQATMGSIARV 147


>gi|312796260|ref|YP_004029182.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168035|emb|CBW75038.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 268

 Score = 36.6 bits (83), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     +VLD V D  N+G+ILRSA A     +  +   + + S  + ++  GA      
Sbjct: 118 RVEATCVVLDGVQDAGNVGSILRSAAAAGIGDVFCSPGTAHAWSPKVLRAGMGAQF---L 174

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +R+    +A   +           S   + L     +  +A + G EG G+  + +   +
Sbjct: 175 LRVHEQVEAADLLARLAVPVFVTDSHDAQALYDVDLSGPLAWVFGNEGAGVSAEWRAAVS 234

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               +  PG +++LNV+ AAAV  +
Sbjct: 235 RRVTIPQPGGMESLNVAAAAAVCFF 259


>gi|156845610|ref|XP_001645695.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116362|gb|EDO17837.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1430

 Score = 36.6 bits (83), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 19/158 (12%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD----GIITT-----KRYSPSESAVLAK 178
            +V  S L++V   V+ P N+G I R      CD    G++T      K +   ++  +  
Sbjct: 1274 SVTRSDLIVVSSLVDKPPNLGGICRL-----CDVLGVGLLTVQDIRVKNHPQFKNVAVTA 1328

Query: 179  SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL-GAE 236
                 +E +P   I  + + ++     G+  IGL  +D    L  +    K +LIL G E
Sbjct: 1329 DRWMPMEEVP---IDGIIEFMRAKKKEGYTLIGLEQTDKSIQLNNKYTFPKKSLILLGTE 1385

Query: 237  GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              G+             +   G+I+++N+  A AV +Y
Sbjct: 1386 AHGIPGHLLSELDLCLEIEQHGVIRSMNIQTATAVIVY 1423


>gi|33596189|ref|NP_883832.1| putative RNA methyltransferase [Bordetella parapertussis 12822]
 gi|33573192|emb|CAE36844.1| putative RNA methyltransferase [Bordetella parapertussis]
          Length = 274

 Score = 36.6 bits (83), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 98/256 (38%), Gaps = 62/256 (24%)

Query: 48  NLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQ-- 99
            + L GVH   A L     P + +F +       ARLD      HP        VPPQ  
Sbjct: 45  RILLDGVHLCQAWLAHQGTPLQALFDV-------ARLD------HPEIRALAGQVPPQHC 91

Query: 100 -TIDK--IVGKEAVHQG-----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
             +D   + G  +V  G     +A    P L   +D     +  ++ D + DP N+G +L
Sbjct: 92  LALDSRLLQGLASVESGQGVVFVARAPEPALPERID-----ENCVLFDRIQDPGNVGTLL 146

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEH------IPYIRISNLTDAL 199
           R+  A     ++     + + S  + +S  GA       EH      +P + +  +   L
Sbjct: 147 RTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRLDVPLVATTL 206

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPG 258
            +         G   D+  P        + A + G EG+G+       A    H+ H   
Sbjct: 207 ARS--------GSLYDTDLPA-------RCAWVFGHEGQGVAEALLRAAALRVHIPHESA 251

Query: 259 IIKALNVSNAAAVALY 274
            +++LNV  AAA+ L+
Sbjct: 252 AVESLNVGAAAAICLF 267


>gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
 gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
          Length = 267

 Score = 36.6 bits (83), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 33/190 (17%)

Query: 103 KIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           ++V    V  GL+ L   PL    LD VR     +VL H + P NIG   R+      D 
Sbjct: 3   RVVISNGVFNGLSGLNVNPL--HLLDKVR-----IVLSHTSHPGNIGGAARAMKTMGLDS 55

Query: 162 I-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           + +   R+ P + A   + A+GAL+    +  + + D L +  S       +++  ++ L
Sbjct: 56  LYLVNPRFFPDKEA--ERRATGALD---ILHKAKVCDTLDEALSGTVLAAAVTA-RQRDL 109

Query: 221 EQEI--------------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALN 264
             E+              + D +AL+ G E  GL   T E +     +H+P      +LN
Sbjct: 110 SHEVFDGRQGATKLLDLAQKDFVALVFGTEMSGL--TTLEVSKCQIIIHIPANPEYSSLN 167

Query: 265 VSNAAAVALY 274
           +++A  V  Y
Sbjct: 168 LASAVQVMAY 177


>gi|291533010|emb|CBL06123.1| rRNA methylases [Megamonas hypermegale ART12/1]
          Length = 70

 Score = 36.6 bits (83), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + L++G+EG+G+   T+     +  + M G + +LN SNAAA+  Y
Sbjct: 16  LVLVIGSEGRGVSRLTKNACDFIVKIPMRGKVNSLNASNAAAILAY 61


>gi|283851956|ref|ZP_06369232.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
 gi|283572680|gb|EFC20664.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
          Length = 156

 Score = 36.6 bits (83), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL+ G E +GL     +TA +   + + G +++LN++NAA+V LY
Sbjct: 100 ALVFGTESRGLPESLLDTAGARLRIPIWGQVRSLNLANAASVVLY 144


>gi|296126080|ref|YP_003633332.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
           12563]
 gi|296017896|gb|ADG71133.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
           12563]
          Length = 162

 Score = 36.2 bits (82), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R  V  + +  I +K      S  + ++     EH+  I+  N    L+  +
Sbjct: 22  PANTGNIGRLCVGLNIELHIVSKPSFIISSKEVRRAGLDYWEHLVLIKHENENTFLEYCN 81

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKA 262
           +   + I ++   K   ++   ++   L+ G E  GLR    E     + ++ M   I++
Sbjct: 82  NNDRRIIPITKFGKNRYDEFNYSNNDILLFGRESTGLRESLWENDLDNSIYIPMSDNIRS 141

Query: 263 LNVSNAAAVALYITQNHFA 281
           +N+SN AA+  Y    H  
Sbjct: 142 INLSNTAAITAYEAYRHIC 160


>gi|224539871|ref|ZP_03680410.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518520|gb|EEF87625.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 253

 Score = 36.2 bits (82), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 22/156 (14%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII----TTKRYSP-SESAVLAKSASG 182
           +V +  L + LD V DP N+G I+R A  F  + I     T   Y+P +  A +   A  
Sbjct: 98  SVISHSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSPNTVDVYNPKTVQATMGGIARV 157

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            L + P      L D +Q +        G   D +    Q++ ++ + +++G EG G+  
Sbjct: 158 KLHYTP------LPDLIQSLKD--IPVYGTFLDGENMYTQKLSSNGL-IVMGNEGNGIGK 208

Query: 243 KTQETATSMAHLHMPG------IIKALNVSNAAAVA 272
           + ++       L++P         ++LNV+ A AV 
Sbjct: 209 EVEQLINR--KLYIPNYPAERETSESLNVAIATAVV 242


>gi|110835132|ref|YP_693991.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110648243|emb|CAL17719.1| RNA methyltransferase, TrmH family [Alcanivorax borkumensis SK2]
          Length = 156

 Score = 36.2 bits (82), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII--KAL 263
           G +   +++   +P  Q    D   L+ G E +GL  +  ++  +   L +P +   ++L
Sbjct: 72  GQRLFAMTTKGSRPHSQACFQDGDVLLFGPETRGLPEQILDSLPATQRLRLPMVAESRSL 131

Query: 264 NVSNAAAVALY 274
           N+SNA AV LY
Sbjct: 132 NLSNAVAVTLY 142


>gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 265

 Score = 36.2 bits (82), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 5/150 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL--EHIPY 189
           S + +V   + DP N+G ILR+  A    G+I         S    +++ GAL  + I  
Sbjct: 115 SDIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQSITQ 174

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R       L++      + IG S  +    ++        L++G E +GL    +    
Sbjct: 175 ARWGEFMHWLREGPG---ELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  + M G   +LN + A AV  Y   N 
Sbjct: 232 LLVKMPMLGKADSLNAAVACAVMAYELLNQ 261


>gi|323345715|ref|ZP_08085938.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269]
 gi|323093829|gb|EFZ36407.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269]
          Length = 257

 Score = 36.2 bits (82), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 15/114 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
           +L + LD + DP N+G I+R A  F  + I  +   +   +    +++ G+L H  I Y 
Sbjct: 104 RLYLALDGIQDPGNLGTIIRIADWFGIEHIYCSIDTADIYNPKTVQASMGSLAHIGISYT 163

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGL 240
            I  L D+L       +   G   D K     +I N+ +     LI+G EG G+
Sbjct: 164 DIPLLIDSLPT----DYPIYGTLLDGK-----DIYNEPLTPHGLLIMGNEGNGI 208


>gi|313246736|emb|CBY35609.1| unnamed protein product [Oikopleura dioica]
          Length = 1335

 Score = 36.2 bits (82), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDG-------IITTKRYSPSESAVLAKSASGALEH 186
            L++    ++  +N+G I R+A  F  +        I+ +K Y+      LA +A   ++ 
Sbjct: 1186 LVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTS-----LAVTAMKWID- 1239

Query: 187  IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
            I  ++  NL   L  M   G+   GL   +    +E+     K  ++LG E +G+     
Sbjct: 1240 IQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREGIPTNII 1299

Query: 246  ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 +  +   GII++LNV  +AA++++
Sbjct: 1300 SLLDVVLEIPQKGIIRSLNVHVSAAISIW 1328


>gi|306836991|ref|ZP_07469940.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567130|gb|EFM42746.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 242

 Score = 36.2 bits (82), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/150 (20%), Positives = 64/150 (42%), Gaps = 14/150 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R   +    +       L H   
Sbjct: 89  RRHSLHIAIENFENDGNIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLRH--- 145

Query: 190 IRISNLTDALQKMHSWGFQ---TIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKT 244
                  +++ K+ +W  +   T+    ++    PLE     ++  L+ G EG G+    
Sbjct: 146 ------HESVDKLIAWASEEDLTVVAIDNTPGCVPLETAELPERALLLFGQEGPGVSAAA 199

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALY 274
           Q+ A     +   G  +++N   AA +A++
Sbjct: 200 QDAALMTCSIAQFGSTRSINAGVAAGIAMH 229


>gi|307294700|ref|ZP_07574542.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306879174|gb|EFN10392.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 265

 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 1/148 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + + +V   + DP N+G ILR+  A    G+I         S    +++ GAL   P I 
Sbjct: 115 ADIWIVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQP-IT 173

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +   + +  +     + IG S  +    ++        L++G E +GL    +     +
Sbjct: 174 QARWGEFMHWLRQGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDLL 233

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G   +LN + A AV  Y   N 
Sbjct: 234 VKMPMLGKADSLNAAVACAVMAYELLNQ 261


>gi|255326412|ref|ZP_05367494.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296452|gb|EET75787.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 251

 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A A     +    R   +    +       + H P I      D +      
Sbjct: 114 NIGTVVRTANAMLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTIE-----DFVAWAQGE 168

Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G + IG+    DS  PLE      K  L+ G EG GL  +    A     +   G  +++
Sbjct: 169 GLEIIGIDIFPDSV-PLETYDLPKKCVLVFGQEGPGLSEELHAAARDTLSIEQFGSTRSM 227

Query: 264 NVSNAAAVALY 274
           N + AA +A++
Sbjct: 228 NAATAAGIAMH 238


>gi|255566751|ref|XP_002524359.1| RNA binding protein, putative [Ricinus communis]
 gi|223536320|gb|EEF37970.1| RNA binding protein, putative [Ricinus communis]
          Length = 1744

 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 14/184 (7%)

Query: 104  IVGKEAVHQGLALETAPLLSP--------TLDAVRNSQ--LLMVLDHVNDPHNIGAILRS 153
            I+G  A  Q L +E    L          T++ +R S+  L++V   ++   N+  + R+
Sbjct: 1553 ILGSNAYKQLLEMEKEDELLDQSLQSRILTMERIRASRQHLILVASFLDRVPNLAGLART 1612

Query: 154  AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIG 211
               F   G+    +    +      S + A + +P I +  +++   L+K    G+  +G
Sbjct: 1613 CEVFRASGLAIADKSILHDKQFQLISVT-AEKWVPIIEVPVNSVKQFLEKKKQEGYSILG 1671

Query: 212  LSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            L   +    L+Q     K  L+LG E +G+         +   +   G++++LNV  + A
Sbjct: 1672 LEQTANSVSLDQFAFPKKTVLVLGREKEGVPVDIIHILDACIEIPQLGVVRSLNVHVSGA 1731

Query: 271  VALY 274
            +AL+
Sbjct: 1732 IALW 1735


>gi|256825068|ref|YP_003149028.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256688461|gb|ACV06263.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 229

 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 1/138 (0%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL  V DP N+G ++R+A A     ++ T       +  + +S +G+L HI  +      
Sbjct: 85  VLSEVRDPGNLGTVIRAADAAGAAFVVVTDASVDVTNPKVVRSTAGSLHHIDVVTGIAFP 144

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           D L+       + +     +   L +   +     + G E +GL         +   + +
Sbjct: 145 D-LRAATGGTVRLVAADGYASTQLPEADLDGPHLWVFGNEARGLPDDQVAACDAAVAVPL 203

Query: 257 PGIIKALNVSNAAAVALY 274
            G  ++LN+  AAAV LY
Sbjct: 204 HGRAESLNLGTAAAVCLY 221


>gi|33592532|ref|NP_880176.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
 gi|33572178|emb|CAE41724.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
 gi|332381950|gb|AEE66797.1| putative RNA methyltransferase [Bordetella pertussis CS]
          Length = 257

 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 98/256 (38%), Gaps = 62/256 (24%)

Query: 48  NLFLYGVHTVSAAL---NNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQ-- 99
            + L GVH   A L     P + +F +       ARLD      HP        VPPQ  
Sbjct: 28  RILLDGVHLCQAWLAHQGTPLQALFDV-------ARLD------HPEIRALAGQVPPQHC 74

Query: 100 -TIDK--IVGKEAVHQG-----LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
             +D   + G  +V  G     +A    P L   +D     +  ++ D + DP N+G +L
Sbjct: 75  LALDSRLLQGLASVESGQGVVFVARAPEPALPERID-----ENCVLFDRIQDPGNVGTLL 129

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGA------LEH------IPYIRISNLTDAL 199
           R+  A     ++     + + S  + +S  GA       EH      +P + +  +   L
Sbjct: 130 RTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRLDVPLVATTL 189

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-HMPG 258
            +         G   D+  P        + A + G EG+G+       A    H+ H   
Sbjct: 190 ARS--------GSLYDTDLPA-------RCAWVFGHEGQGVAEALLRAAALRVHIPHESA 234

Query: 259 IIKALNVSNAAAVALY 274
            +++LNV  AAA+ L+
Sbjct: 235 AVESLNVGAAAAICLF 250


>gi|110638315|ref|YP_678524.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280996|gb|ABG59182.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406]
          Length = 249

 Score = 36.2 bits (82), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            + ++ LD++NDP N+G I+R A  +    II ++  +   +  +  ++ G+   +  + 
Sbjct: 104 GEWVIALDNINDPGNLGTIIRIADWYGISKIICSEDTADFYNPKVINASKGSFLRVK-VH 162

Query: 192 ISNLTDAL--QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            ++L+  L  Q++  +G    G +  +    E  I      L++G E  G+    +   T
Sbjct: 163 YTDLSAFLKQQRVSVYGADLHGENIHTASFKEVGI------LVMGNEAHGISEGVKACIT 216

Query: 250 SMAHLHMPGIIKALNVSNAAAVA 272
            M  +   G  ++LNV  A A+ 
Sbjct: 217 QMLTIPRFGQAESLNVGIATAIC 239


>gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
 gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
          Length = 230

 Score = 36.2 bits (82), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 13/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL  +  P NIG I R    F  + ++        ES + A  A   L+    +++ NL
Sbjct: 4   VVLVELKIPENIGFIARVMKNFGFEKLVLYNCNVSKESYITAAHAKDVLDKA--VKVENL 61

Query: 196 TDALQK----MHSWGFQTIGLSSDSKKP------LEQEIKNDKIALILGAEGKGLRPKTQ 245
            + L++    + + G ++  +    ++P      L + IK +  A++ G E  GL  +  
Sbjct: 62  KEYLEEKNLVVGTTGVRSRRVERYIRRPYYTPEELREMIKGET-AILFGREDYGLYDEEL 120

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +  +        +NVS+AAAV LY
Sbjct: 121 KLCNVIVSVPTSEEYPVMNVSHAAAVILY 149


>gi|307107286|gb|EFN55529.1| hypothetical protein CHLNCDRAFT_133965 [Chlorella variabilis]
          Length = 542

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 46/182 (25%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAF---------SCDGIITTKRYSPSESAV----LAKSAS 181
           ++ LD V DP N+G +LR+A+A           C      K    S  AV    LA+ + 
Sbjct: 349 VLALDGVQDPGNLGTLLRTALALGWQAAVLLPGCCDPYNDKALRASRGAVFKLPLAQYSL 408

Query: 182 GALEH-------IPYIRI--------------------SNLTDALQKMHSWGFQTIGLSS 214
           G  +        +P                        S    A Q+ H    Q      
Sbjct: 409 GQWQQLVEEQRLVPLAADPSRAAAAAAADARGTAGRDGSGSAAARQQQHG---QAAAPEG 465

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVA 272
           D    L+Q +    + L LGAEG+GL    +E   +++     G  ++++LNVS A A+ 
Sbjct: 466 DVGA-LQQRLAQLPVCLCLGAEGQGLSAGVRERCVAVSIPQSGGGELMESLNVSAAGAIL 524

Query: 273 LY 274
           ++
Sbjct: 525 MF 526


>gi|316932736|ref|YP_004107718.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris DX-1]
 gi|315600450|gb|ADU42985.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           DX-1]
          Length = 151

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  LR     + +  I      P+      +S    L+ +  +R     D+  K  
Sbjct: 11  PQNTGTTLRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVR----HDSWLKFE 66

Query: 204 SW----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            W    G + I L++  ++P  ++       L+LG E  G+       A +   + M   
Sbjct: 67  QWRENAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIPMQPG 126

Query: 260 IKALNVSNAAAVA 272
           +++LNV+ AAA+ 
Sbjct: 127 LRSLNVAMAAAMV 139


>gi|332703269|ref|ZP_08423357.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553418|gb|EGJ50462.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 151

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL+LG E  GL  +  E+   +  + + G +++LN++NAA+V LY
Sbjct: 95  ALVLGPEATGLPMRIIESIPQLVRIPIWGQVRSLNLANAASVLLY 139


>gi|67605967|ref|XP_666721.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657764|gb|EAL36488.1| hypothetical protein Chro.10198 [Cryptosporidium hominis]
          Length = 740

 Score = 36.2 bits (82), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 4/154 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L+++   V+   NI  I R+   F  + ++ + +       +  + +  A + +P   
Sbjct: 583 SGLIVIGSLVDKVPNIAGITRTCEVFRANELLLSSK-KVMNDPIFRQISVTAEKWLPINE 641

Query: 192 I--SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETA 248
           +  + + + +QK    G++  GL   S     +E    +K  LILG E +G+  +     
Sbjct: 642 LEPTKIKEYVQKKRMEGYKIFGLEQTSSSISIKECAFPEKSVLILGKEKEGIPSEIVSIV 701

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                +   GII++LNV  +A++ +Y     F +
Sbjct: 702 DQCIEIPQYGIIRSLNVHVSASIFIYEYTTQFMQ 735


>gi|294790555|ref|ZP_06755713.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
 gi|294458452|gb|EFG26805.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
          Length = 276

 Score = 36.2 bits (82), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-KMHS 204
           NIG+I+R+A AF+  G+     +  +    L      ++++  Y  I     A++ +   
Sbjct: 139 NIGSIVRTANAFTARGVHIIGPHKWNRKGSLMTELYQSVDY--YASIDEFVHAVRTRDQE 196

Query: 205 WGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            G  T  ++ D      P+E     ++  L+ GAEG GL  +  E A  + ++   G ++
Sbjct: 197 SGQHTRLIALDIVPGAVPIESYQFPEQCILLFGAEGPGLTSRALEIADDVVYITQYGSVR 256

Query: 262 ALN 264
           +LN
Sbjct: 257 SLN 259


>gi|159490732|ref|XP_001703327.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
 gi|28207743|gb|AAO32614.1| CR004 protein [Chlamydomonas reinhardtii]
 gi|158280251|gb|EDP06009.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
          Length = 316

 Score = 36.2 bits (82), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 2/153 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   +L +++ + D  N+ A+ R+A A    G +     +  +  +  ++A+GA + +
Sbjct: 86  AKRTFTVLPIVEGLYDMGNLAAVCRTADALGY-GAVHAVNKADGKFKMSQRTAAGADKWL 144

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE 246
                 +  + L  M + G+Q +           QE+   +  A++LG E  G+  +   
Sbjct: 145 DVKAWDSTGECLAAMKAAGYQIVTTHLTQSSITIQEVDWTRPTAVVLGNEKFGVSAEAVA 204

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A + A + M G++++ N+S A A+ LY  Q  
Sbjct: 205 AADACAIIPMTGMVESFNISVANALILYEAQQQ 237


>gi|254423600|ref|ZP_05037318.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196191089|gb|EDX86053.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 213

 Score = 36.2 bits (82), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 16/160 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPS------ESAVLAKSAS 181
           R   L+ V+++ ND  NIG I+R+  A   +   I+  K+  P       E   L+K++ 
Sbjct: 22  RCKNLIAVIENPNDIKNIGTIIRNVNALGVEKAYIVDPKKALPDDWQEMREKRALSKTSV 81

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------KIALILG 234
            A++     R  +    +  +    F +I ++S   K  +  + ++       K+A+  G
Sbjct: 82  SAIKWSFVKRFDSTAACIDHLEQNRFVSI-VTSPHLKGRKNAVLDEADYTIYTKLAVWFG 140

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E  G+     E +     + M G+I++LN+   + + LY
Sbjct: 141 NESMGISDLAVEHSDLCVSIPMFGMIESLNLGTTSGIVLY 180


>gi|320590055|gb|EFX02500.1| RNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 719

 Score = 36.2 bits (82), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 115/290 (39%), Gaps = 73/290 (25%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA-------TKNALARLDWDA----------NLPHPFP 92
           FLYG   V AAL +  R++++L          +++  R   D           ++ H   
Sbjct: 385 FLYGRSVVEAALRSDRRQLYRLYVHRAAAEYGRHSRGRQQDDGIERLAVARGLSIQH--- 441

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDH-------VN 142
           V     + +DK+  K   H G  LE +PL  P + A+   R     + L H       VN
Sbjct: 442 VDARGQRLMDKMS-KGRPHNGYVLEASPLRQPPVVALGRWREHGFDVELGHQSREDAAVN 500

Query: 143 D------------------------------PHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                                          P N+GAILR+A       +  ++R S   
Sbjct: 501 GTDTFVQIARPGSNTTAGRHPLVLLLDQVLDPGNLGAILRTASFLGVSAVAVSQRSSAGL 560

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIA 230
           ++V  K+++GA E +  + + +    + +    G++     +       LE    +D + 
Sbjct: 561 TSVALKASAGAAEAMALLSVEDAASFVTRSRDAGWRVYAAVIPGSRTADLEDVETDDPLG 620

Query: 231 -----LILGAEGKGLRPKTQETAT----SMAHLHMPGIIKALNVSNAAAV 271
                L++G+EG+GL P+T   A     ++A+     ++ +LNVS AA +
Sbjct: 621 RQACLLVVGSEGEGL-PRTVRRAADVEVAIANRSGSDVVDSLNVSVAAGL 669


>gi|27367704|ref|NP_763231.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
 gi|27359276|gb|AAO08221.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
          Length = 244

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II +      Y+P       K+
Sbjct: 92  PAIETPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASSDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     +++S L D    +        G   + +   +       I L++G+E  G
Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEQANLPIYGAFLEGESVHKTTFSAQGI-LLMGSESHG 202

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 203 VREQASKLVTDKITIPTFGGAESLNVAMATGIIL 236


>gi|313237882|emb|CBY13012.1| unnamed protein product [Oikopleura dioica]
          Length = 643

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDG-------IITTKRYSPSESAVLAKSASGALEH 186
           L++    ++  +N+G I R+A  F  +        I+ +K Y+      LA +A   ++ 
Sbjct: 494 LVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTS-----LAVTAMKWID- 547

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I  ++  NL   L  M   G+   GL   +    +E+     K  ++LG E +G+     
Sbjct: 548 IQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREGIPTNII 607

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  +   GII++LNV  +AA++++
Sbjct: 608 SLLDVVLEIPQKGIIRSLNVHVSAAISIW 636


>gi|260063174|ref|YP_003196254.1| spoU protein [Robiginitalea biformata HTCC2501]
 gi|88783268|gb|EAR14440.1| spoU protein [Robiginitalea biformata HTCC2501]
          Length = 217

 Score = 35.8 bits (81), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKS-ASGALE 185
           A R   + + L  V   HN  A++RS   F   D  +  +R+       L K+ A GA  
Sbjct: 26  ANRTRYITVALQDVYQLHNASAVIRSCDIFGIQDAHLIEERFGNR----LDKNIAMGAQR 81

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKT 244
            +   R  +    +  +   G++ +  S        + +  D  +A+  G E +GL    
Sbjct: 82  WVDIHRYKSTDACVHALREKGYRIVATSPHQGSVSPEALPLDTPVAVFFGTEKEGLSEGL 141

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A +   + M G  ++LNVS AAA+ L
Sbjct: 142 IRQADAAIQIPMVGFTESLNVSVAAAIVL 170


>gi|212715379|ref|ZP_03323507.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661685|gb|EEB22260.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM
           16992]
          Length = 227

 Score = 35.8 bits (81), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++
Sbjct: 161 PMETYCFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMH 216


>gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 256

 Score = 35.8 bits (81), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P NIG   R+     C  ++     +      L  + + A   +  +R++
Sbjct: 5   LRVVLVRTKYPENIGMAARACANMGCSDLVLVDPLNLDLDKALPLATAHARHILESVRVT 64

Query: 194 -NLTDALQKMHSWGFQTIGLSSDSKK----PLE-------QEIKNDKIALILGAEGKGLR 241
             L  AL   H   F T   +   +K    P+E       + +K  ++AL+ G+E KGL 
Sbjct: 65  HGLAAALADAHVV-FGTTARTGGWRKSLVPPVEAGRMAAAELVKGKRVALVFGSEDKGLE 123

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  +    +  +     + +LN++ A  V LY
Sbjct: 124 NEEIQMCGQLVTIPTAREMSSLNLAQAVLVLLY 156


>gi|149196494|ref|ZP_01873548.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
           HTCC2155]
 gi|149140174|gb|EDM28573.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
           HTCC2155]
          Length = 166

 Score = 35.8 bits (81), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 6/130 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+  I+R A    C G+  ++  +   + V +K A    E +  +  ++L   L+K+   
Sbjct: 33  NLSTIMRMA---GCSGV--SQVIATGNAKVNSKIARDGAEQVNLVTKNSLPPVLKKLKQD 87

Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G+  +GL  + +   L       K  L++GAE +GL     +       + + G+  + N
Sbjct: 88  GYTLVGLEQTTNSNNLHDFDFPHKCVLVVGAEREGLSQDCLDCLDYTVEIPVWGLPYSYN 147

Query: 265 VSNAAAVALY 274
           V++A ++A+Y
Sbjct: 148 VASATSLAVY 157


>gi|297621668|ref|YP_003709805.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297376969|gb|ADI38799.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 239

 Score = 35.8 bits (81), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD +   HN+G+ILR+  AF    +  +K         ++K+A G  + I + R ++ 
Sbjct: 99  LYLDQIRSAHNVGSILRTVEAFQLGDVYFSKDTPLPTHPQVSKTAMGCSKEICFQRHASP 158

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           ++  + + +    + G+      P+++        L +G E  GL  +    A ++  + 
Sbjct: 159 SELPRPLIALETSSDGI------PIDKYTFPSSGCLAVGNEEYGLSDEVLSQADAVVEIP 212

Query: 256 MPGIIKALNV 265
           + G   +LNV
Sbjct: 213 LYGKKNSLNV 222


>gi|294786700|ref|ZP_06751954.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315226315|ref|ZP_07868103.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|294485533|gb|EFG33167.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315120447|gb|EFT83579.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 247

 Score = 35.8 bits (81), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P+E     ++  L+ GAEG GL  K    A  + ++   G +++LN   AAAV+++
Sbjct: 185 PIETYRFPERCVLLFGAEGPGLTRKALGIADDVVYITQYGSVRSLNAGAAAAVSMH 240


>gi|283457160|ref|YP_003361728.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283133143|dbj|BAI63908.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 253

 Score = 35.8 bits (81), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A A     +    R   +    +       + H P I      D +      
Sbjct: 116 NIGTVVRTANAMLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTIE-----DFVAWAQGE 170

Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G + IG+    DS  PLE      K  L+ G EG GL  +    A     +   G  +++
Sbjct: 171 GLEIIGIDIFPDSV-PLETYDLPKKCVLVFGQEGPGLSEELHAAARDTLSIEQFGSTRSM 229

Query: 264 NVSNAAAVALY 274
           N + AA +A++
Sbjct: 230 NAATAAGIAMH 240


>gi|160880554|ref|YP_001559522.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160429220|gb|ABX42783.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 238

 Score = 35.8 bits (81), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 18/187 (9%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +TI K+  KE V      E     S T+DA + SQ+++V  + ++  N+G ILR+AV F 
Sbjct: 64  KTIAKVSDKENVFVVGVFEK---YSCTVDATK-SQIVLV--NPSNMGNLGTILRTAVGF- 116

Query: 159 CDGIITTKRYSPSESAV---LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             GI       P        + +S+ GAL  + +    + ++  ++  +    T  L  +
Sbjct: 117 --GIHDVSFIEPGADVFNPKVVRSSMGALFRLRHQYFESFSEYQKQNPNHEIFTFML--N 172

Query: 216 SKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            KKPL      K    +L+ G E  GL        TS+  +     + +LN++ A  +  
Sbjct: 173 GKKPLTINDCPKPKLFSLVFGNEATGLDDSYLSVGTSII-IPQSEEVDSLNLTIAVGIGT 231

Query: 274 YI-TQNH 279
           Y+ TQN+
Sbjct: 232 YLFTQNN 238


>gi|322503109|emb|CBZ38193.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 607

 Score = 35.8 bits (81), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           ++VLD+V DP  +G +LR+A  +  D II T   +      + ++A GA
Sbjct: 228 VLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGA 276


>gi|283782612|ref|YP_003373366.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
 gi|283441898|gb|ADB14364.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
          Length = 268

 Score = 35.8 bits (81), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  ++ GAEG GL  K  E A  + ++   G +++LN   AAAV+++
Sbjct: 211 RCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMH 257


>gi|269218564|ref|ZP_06162418.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211675|gb|EEZ78015.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 281

 Score = 35.8 bits (81), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 117/281 (41%), Gaps = 32/281 (11%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           K++  ++L+R  R +++     Q+SRH        + G   V   L   S     L  T+
Sbjct: 6   KEATRSQLQRAQRLHRR----EQRSRHG----QTLVEGPQAVRELLACASGLARDLYVTE 57

Query: 76  NALARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
            A+ R    A L     V T  +  Q +  +    A  QG+    +   +P L+++    
Sbjct: 58  EAIERHGDVAELASAAGVWTHVLAAQDMRDL---SADAQGVVAVISTPEAPGLNSLLGEA 114

Query: 134 LLMV--LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            L+V  LD + DP N+G I+R+A A   D +   K  +   S  + +SA+G+  H+P + 
Sbjct: 115 SLVVATLD-IADPGNLGTIIRTADAAGADAVAVGKASAELYSPKVMRSAAGSHFHVPCVA 173

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA--EGKGLRPKT----Q 245
               ++   +    G Q +      +  L   I+    A ILGA   G  LR +T     
Sbjct: 174 GVEASELAARAREAGLQVLTAEGTGEWELPVLIREAAEARILGAAPSGPDLRRRTLWFVG 233

Query: 246 ETATSM--------AHLHMP--GIIKALNVSNAAAVALYIT 276
             A           A + +P  G  ++LNVS A AV  Y +
Sbjct: 234 NEARGFAGCDFDVDARVAVPLYGKAESLNVSTALAVCAYAS 274


>gi|297243148|ref|ZP_06927086.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296889359|gb|EFH28093.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 268

 Score = 35.8 bits (81), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  ++ GAEG GL  K  E A  + ++   G +++LN   AAAV+++
Sbjct: 211 RCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAAVSMH 257


>gi|146101359|ref|XP_001469096.1| hypothetical protein [Leishmania infantum]
 gi|134073465|emb|CAM72196.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 607

 Score = 35.8 bits (81), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           ++VLD+V DP  +G +LR+A  +  D II T   +      + ++A GA
Sbjct: 228 VLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGA 276


>gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297]
 gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297]
          Length = 254

 Score = 35.8 bits (81), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 132 SQLLMVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +Q  +VL H +   NIG+  R+   + F    ++  K +   ++  +A  A+  LE    
Sbjct: 12  AQTKVVLVHTSHSGNIGSAARAMKTMGFHNLVLVAPKTFPSDDAIAMASGATDILEQ--A 69

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK---PL-------EQEI---KNDKIALILGAE 236
           + +  L +A+      GF  +G S+ S+    PL       EQ +    N ++AL+LG E
Sbjct: 70  VVVETLEEAVADC---GF-VVGASARSRNLPWPLVHPRQMAEQALALPDNTRVALVLGRE 125

Query: 237 GKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALY 274
             GL     E A    H+++P      +LNV+ A  V  Y
Sbjct: 126 RSGL--TNDELARCHCHVNIPANPDYSSLNVAAAVQVLCY 163


>gi|321461680|gb|EFX72710.1| hypothetical protein DAPPUDRAFT_58639 [Daphnia pulex]
          Length = 177

 Score = 35.8 bits (81), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 29/143 (20%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           L+++   V+   N+G + R+       D ++++ R +  +  V    ++    ++  I+ 
Sbjct: 22  LIVIASLVDRVPNLGGLCRTCEVLGVRDFVLSSLRVTEEKDFVSLSVSAEKWINVLEIKP 81

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             L + ++++   G+  +G   + S +PL       K ALILG E +G+  +  +     
Sbjct: 82  FQLVEYVKQLKLEGYTVVGAEQTASSQPLNHFTFPKKSALILGHEKEGIPVELIQHLDVC 141

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             +   GII+++NV    A+ ++
Sbjct: 142 VEVPQEGIIRSMNVHVTGAIFIW 164


>gi|37675829|ref|NP_936225.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37200368|dbj|BAC96195.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 244

 Score = 35.8 bits (81), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P ++  +   L++ LD V+DP N+G I+R A  +    II +      Y+P       K+
Sbjct: 92  PAIETPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIIASSDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     +++S L D    +        G   + +   +       I L++G+E  G
Sbjct: 145 ISATMGSFGRVQVS-LVDLPSYLEQANLPIYGAFLEGESVHKTTFSAQGI-LLMGSESHG 202

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R +  +  T    +   G  ++LNV+ A  + L
Sbjct: 203 VREQASKFVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|15811191|gb|AAL08856.1|AF308680_1 unknown [Ehrlichia ruminantium]
          Length = 99

 Score = 35.8 bits (81), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK------NALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +YG H   AAL N +RK  +LL T+      N + ++   +   + +P K V   TI+ +
Sbjct: 1   IYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNINTINSV 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV 129
           +   + HQG+AL+ + + + +++ V
Sbjct: 60  LPPNSNHQGIALQVSIVDTVSIEDV 84


>gi|317406253|gb|EFV86497.1| RNA methyltransferase [Achromobacter xylosoxidans C54]
          Length = 262

 Score = 35.8 bits (81), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D + DP N+G +LR+  A     +      + + S  + +S  GA  H   + I   
Sbjct: 114 VLFDRIQDPGNVGTLLRTCAAAGIKRVFLATGTAAAWSPKVLRSGQGA--HF-ALAIHEH 170

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL- 254
            D    + + G   +  + +  + L       + A + G EG+G+  +    A     + 
Sbjct: 171 VDLSALLPTLGVPLVATALEGAQDLYAGRLPARCAWVFGHEGQGVAAELLAAARLKLRIP 230

Query: 255 HMPGIIKALNVSNAAAVALY 274
           H    +++LNV  AAA+ L+
Sbjct: 231 HDMAAVESLNVGAAAAICLF 250


>gi|146283285|ref|YP_001173438.1| rRNA methylase [Pseudomonas stutzeri A1501]
 gi|145571490|gb|ABP80596.1| rRNA methylase [Pseudomonas stutzeri A1501]
          Length = 241

 Score = 35.8 bits (81), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 28/237 (11%)

Query: 48  NLFLY-GVHTV----SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
            LFL  G H V     AAL NP  +  +L  T    A   W +    PF    +  + + 
Sbjct: 19  GLFLVEGEHLVLELQKAALLNPLLQGSELYVTN---AYEQWQS----PFKTHLISDRQMA 71

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS---C 159
           +I   +     +AL   P+    + A    +  + L  + DP N+G ILR+   F    C
Sbjct: 72  QIADTKTPQGIVAL--VPMPDAPVSAPVAGERAIYLHEIQDPGNLGTILRTLAWFGNFRC 129

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +++     P    V+ +S+ GA+ H P      L  AL  + +  F  I       +P
Sbjct: 130 --LLSPGSVDPYNPKVV-RSSMGAIFHAPM----ELDVALDSLRT-RFARIACLDMQGEP 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALY 274
           ++          + G E +G+ P+ Q  A       +PG   I++LN++    +  Y
Sbjct: 182 VQSTAFTTFECYLFGNEARGV-PRDQLNALGARPFTIPGCGAIESLNLAATVNMCAY 237


>gi|327481683|gb|AEA84993.1| rRNA methylase [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score = 35.8 bits (81), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 14/144 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS---CDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           + L  + DP N+G ILR+   F    C  +++     P    V+ +S+ GA+ H P + +
Sbjct: 103 IYLHEIQDPGNLGTILRTLAWFGNFRC--LLSPGSVDPYNPKVV-RSSMGAIFHAP-LEL 158

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
               D+L+      F  I       +P++          + G E +G+ P+ Q  A    
Sbjct: 159 DVALDSLRTR----FARIACLDMQGEPVQSTAFTTFECYLFGNEARGV-PRDQLNALGAR 213

Query: 253 HLHMPGI--IKALNVSNAAAVALY 274
              +PG   I++LN++    +  Y
Sbjct: 214 PFTIPGCGAIESLNLAATVNMCAY 237


>gi|323496165|ref|ZP_08101223.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
 gi|323318442|gb|EGA71395.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
          Length = 244

 Score = 35.8 bits (81), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 13/154 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKS 179
           P+++  +   L++ LD V+DP N+G I+R A  +    I+ +      Y+P       K+
Sbjct: 92  PSVEIPKAQGLMIALDGVSDPGNLGTIIRVADWYGIKHIVASTDCADPYNP-------KT 144

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            S  +     + +S L D  + +        G   + +   + +   + I L++G+E  G
Sbjct: 145 ISATMGSFGRVTVSQL-DLPRYLEQSNLPVYGAFLEGESVHKTDFAAEGI-LLMGSESHG 202

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +R    +  T    +   G  ++LNV+ A  + L
Sbjct: 203 IREHAAKFVTDKITIPAFGGAESLNVAMATGIIL 236


>gi|116669083|ref|YP_830016.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116609192|gb|ABK01916.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 224

 Score = 35.8 bits (81), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A AF    +    R   +    +       + H P +      D +      
Sbjct: 88  NIGTVVRTANAFLAKEVHIIGRRRWNRRGAMVTDRYQHVRHHPTVE-----DFVAWAQGE 142

Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G   IG+    DS  PLE         L+ G EG GL P+  E A     +   G  +++
Sbjct: 143 GLAIIGIDIFPDSV-PLETYDLPKNCVLVFGQEGPGLTPEVHEAAVDTLSIEQFGSTRSI 201

Query: 264 N 264
           N
Sbjct: 202 N 202


>gi|72548478|ref|XP_843394.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|323363911|emb|CBZ12917.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 569

 Score = 35.4 bits (80), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 37/78 (47%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G +      A+ T P+    +   +    ++VLD++ DP  +G +LR+A  +  D II T
Sbjct: 161 GSDGYVGDFAIPTPPMKEKLIANHQRLNRVLVLDNIEDPGVLGTLLRTASGYQYDAIIAT 220

Query: 166 KRYSPSESAVLAKSASGA 183
              +      + ++A GA
Sbjct: 221 NHCADLYDHRVVRAARGA 238


>gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
 gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
          Length = 241

 Score = 35.4 bits (80), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 17/152 (11%)

Query: 136 MVLDHVNDPHNIGAILRS--AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++L H + P NIGA  R+   +  S   +I  K +   E+ V A SA   LE I     +
Sbjct: 12  IILSHTSHPGNIGAAARAMKTMGLSSLYLINPKTFPDKEADVRAVSARDILEKIRVC--T 69

Query: 194 NLTDALQKMHSWGFQTI---GLSSD------SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            L +AL         T     LS D        + L +  +   +AL+ G E  GL   T
Sbjct: 70  TLDEALDNTVLTAAMTARPRDLSHDVFNARQGARELLRYARQHPVALLFGTETSGL--TT 127

Query: 245 QETATSMAHLHMPG--IIKALNVSNAAAVALY 274
            E +     +H+P      +LN+++A  V  Y
Sbjct: 128 AEVSKCQMIIHIPANPEFTSLNLASAVQVMTY 159


>gi|256371686|ref|YP_003109510.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008270|gb|ACU53837.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 316

 Score = 35.4 bits (80), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 87/213 (40%), Gaps = 37/213 (17%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPL--LSPTLDAVRNSQLLMVLDHVNDPHN 146
            P+     + I + VG  A+H+G+    E  P+  L   LD     +  +V + V D  N
Sbjct: 92  VPILVASRRVIAETVGF-ALHRGVVAHAERPPVQALEDFLDLWAPGETALVAEGVVDQEN 150

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL------- 199
           +GA+ R+A AF    ++     +   +    + ++G L  +P +R +    AL       
Sbjct: 151 LGALGRNAAAFGACALVLDPTSADPRNRRSVRVSAGHLLTLPLVRATPWPSALALLARSQ 210

Query: 200 ------------QKMHSWGF-------------QTIGLSSDSKKPLEQEIKNDKIALILG 234
                       Q++ +                + IG    ++ P E ++   ++AL++G
Sbjct: 211 VRIAALVPPASTQRLRTERTCDLTPVVTVDELAEAIGEPRHARAPGEHDLPRPRVALLVG 270

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +EG GL P     A  +  + +   + ++N++ 
Sbjct: 271 SEGHGLSPSALAYADVLVTIPIANGVDSVNLAT 303


>gi|227502001|ref|ZP_03932050.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|227077285|gb|EEI15248.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
          Length = 257

 Score = 35.4 bits (80), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 15/154 (9%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +D  R+S  + + +  ND  NIG ++R+A AF+ D +    R   +    +       L 
Sbjct: 101 IDKRRHSLHIAIENFENDA-NIGTVVRTANAFAVDTVHIVGRRRWNRRGAMVTDRYQHLR 159

Query: 186 HIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKK--PLEQEIKNDKIALILGAEGKGL 240
           H          +++ K+ +W  +   T+    ++    PLE     ++  L+ G EG G+
Sbjct: 160 H---------HESVDKLIAWASEEDLTVVAIDNTPGCVPLETAELPERSLLLFGQEGPGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               Q+ A     +   G  +++N   AA +A++
Sbjct: 211 SAAAQDAALMTCSIAQFGSTRSINAGVAAGIAMH 244


>gi|311746529|ref|ZP_07720314.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
 gi|126575429|gb|EAZ79761.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
          Length = 249

 Score = 35.4 bits (80), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 7/141 (4%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L++ LD V DP N+G I+R A  +    ++ + + +   +  + +S+ G+   + +  
Sbjct: 104 NELVIALDDVRDPGNLGTIIRIADWYGIKNLLFSSQTADFYNPKVIQSSMGSFTRVNFY- 162

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETATS 250
                D  +    WG    G           E+K+     L++G E  G+  + +   + 
Sbjct: 163 ---YGDLKEVFEEWGVPIYGAYLGGSNI--HELKSPAAGVLLMGNESNGISKELEPFVSK 217

Query: 251 MAHLHMPGIIKALNVSNAAAV 271
              +   G  ++LNV+ A A+
Sbjct: 218 KLTIPGSGEAESLNVAIATAI 238


>gi|254480165|ref|ZP_05093413.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
 gi|214039727|gb|EEB80386.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
          Length = 215

 Score = 35.4 bits (80), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 9/142 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCD---GIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           MV D V+   N+ AI+R+  A        +I T+ Y          +A G+   +     
Sbjct: 1   MVTDFVHKQRNLSAIVRNCDAVGIQRMHAVIGTEDYK-----TFRGTAMGSHHWVDVDTH 55

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSM 251
            N   AL  + + G+Q +    D +    +++       +++GAE +G+     E     
Sbjct: 56  QNPAVALDALKASGYQLVAAHFDEQAADYRQVDYTLPTGILMGAERRGVSAIALERVDRC 115

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             + M G++++ NVS AA + L
Sbjct: 116 ITIPMVGMVESYNVSVAAGIIL 137


>gi|119026478|ref|YP_910323.1| hypothetical protein BAD_1460 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118766062|dbj|BAF40241.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 304

 Score = 35.4 bits (80), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++
Sbjct: 238 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMH 293


>gi|313243076|emb|CBY39772.1| unnamed protein product [Oikopleura dioica]
          Length = 228

 Score = 35.4 bits (80), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDG-------IITTKRYSPSESAVLAKSASGALEH 186
           L++    ++  +N+G I R+A  F  +        I+ +K Y+      LA +A   ++ 
Sbjct: 79  LVICASLIDKANNLGGITRTAEVFGAESLAISNLSILKSKDYTS-----LAVTAMKWID- 132

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I  ++  NL   L  M   G+   GL   +    +E+     K  ++LG E +G+     
Sbjct: 133 IQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNEREGIPTNII 192

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  +   GII++LNV  +AA++++
Sbjct: 193 SLLDVVLEIPQKGIIRSLNVHVSAAISIW 221


>gi|289668560|ref|ZP_06489635.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 180

 Score = 35.4 bits (80), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           L + LD V +PHN GA+LRS+  F   G++
Sbjct: 145 LALWLDGVGNPHNFGAMLRSSAHFGVAGLL 174


>gi|229817083|ref|ZP_04447365.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM
           20098]
 gi|229784872|gb|EEP20986.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM
           20098]
          Length = 275

 Score = 35.4 bits (80), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YIT 276
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV++  +I 
Sbjct: 209 PMETYRFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMHAWIA 268

Query: 277 QN 278
           Q+
Sbjct: 269 QH 270


>gi|28897728|ref|NP_797333.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260363841|ref|ZP_05776596.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
 gi|260876899|ref|ZP_05889254.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           AN-5034]
 gi|260897959|ref|ZP_05906455.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902161|ref|ZP_05910556.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
 gi|28805941|dbj|BAC59217.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085459|gb|EFO35154.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093903|gb|EFO43598.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           AN-5034]
 gi|308108291|gb|EFO45831.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
 gi|308113897|gb|EFO51437.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
          Length = 244

 Score = 35.4 bits (80), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L++ LD V+DP N+G I+R A  +    II +      Y+P       K+ S  +     
Sbjct: 102 LMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KTISATMGSFGR 154

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +++S L D    +        G   + +   + +   + I L++G+E  G+R +  +  T
Sbjct: 155 VQVS-LVDLPSYLAEANLPVYGAFLEGESVHKTDFSAEGI-LLMGSESHGVREEASKFVT 212

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               +   G  ++LNV+ A  + L
Sbjct: 213 DKITIPAFGGAESLNVAMATGIIL 236


>gi|291232158|ref|XP_002736012.1| PREDICTED: RNA methyltransferase like 1-like [Saccoglossus
           kowalevskii]
          Length = 445

 Score = 35.4 bits (80), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G  AV      E  P++S      ++  L ++ D++ +P N+GA+LRSAVA     I+ T
Sbjct: 206 GIMAVFSQPRFEDLPMMSEE----QSIPLTVICDNIREPGNLGALLRSAVAAGSQQILVT 261

Query: 166 K 166
           K
Sbjct: 262 K 262


>gi|149923142|ref|ZP_01911556.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
 gi|149815980|gb|EDM75495.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
          Length = 213

 Score = 35.4 bits (80), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD+V    N+G++ R+A       +         E   +AK++ GA   + +   ++  
Sbjct: 62  LLDNVRSLRNVGSMFRTADGAGVKAMHLCGFTPTPEHPKMAKTSLGAEASVAWSHHADGA 121

Query: 197 DALQKMHSWGFQTIGLSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            A   +   G +   L    +         +     +  I L+LG E  G+ P+      
Sbjct: 122 AAAAALVEQGRRLWALEGGPRAEDLFDLARVSGGPSDPAIVLVLGHEVSGVDPRILAHCE 181

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +A + M GI  +LNVS A AVA Y+ +
Sbjct: 182 RVARIPMAGIKGSLNVSVAFAVAAYLLR 209


>gi|257054410|ref|YP_003132242.1| transcriptional regulator, AsnC family [Saccharomonospora viridis
           DSM 43017]
 gi|256584282|gb|ACU95415.1| transcriptional regulator, AsnC family [Saccharomonospora viridis
           DSM 43017]
          Length = 148

 Score = 35.4 bits (80), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSES 173
           +AP +   +D +R + +L     V DP  +G    + V   C G ++  R      P   
Sbjct: 30  SAPAVKRRVDRLRETGVLRGFTAVVDPEALGWGTEAFVEVHCQGNVSPTRIRAHLEPLPE 89

Query: 174 AVLAKSASGALEHIPYIR---ISNLTDALQKMHSWGFQTI 210
            V A + SGA + I ++R   I +L DAL+++   G + I
Sbjct: 90  VVAAYTVSGAADAIVHLRAADIHHLEDALERLR--GLEII 127


>gi|328473290|gb|EGF44138.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus 10329]
          Length = 244

 Score = 35.4 bits (80), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR----YSPSESAVLAKSASGALEHIPY 189
           L++ LD V+DP N+G I+R A  +    II +      Y+P       K+ S  +     
Sbjct: 102 LMIALDGVSDPGNLGTIIRVADWYGIKHIIASTDCADPYNP-------KTISATMGSFGR 154

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +++S L D    +        G   + +   + +   + I L++G+E  G+R +  +  T
Sbjct: 155 VQVS-LVDLPSYLAEANLPVYGAFLEGESVHKTDFSAEGI-LLMGSESHGVREEASKFVT 212

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
               +   G  ++LNV+ A  + L
Sbjct: 213 DKITIPAFGGAESLNVAMATGIIL 236


>gi|158294780|ref|XP_001237715.2| AGAP005789-PA [Anopheles gambiae str. PEST]
 gi|157015725|gb|EAU76501.2| AGAP005789-PA [Anopheles gambiae str. PEST]
          Length = 1402

 Score = 35.4 bits (80), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 6/151 (3%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHIPYIR 191
            L++V   VN   N+G + R+   F+   ++  + +     E   L+ +A   L+ I  ++
Sbjct: 1247 LIVVASLVNRAPNLGGLARTGEIFAIKQLVINSLQDIGNKEFQALSMTAEKWLK-IGELK 1305

Query: 192  ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
               + + L++M   G+  +G   +   K + Q     K  L+LG E  GL  +       
Sbjct: 1306 THRVVEYLREMKEKGYSVVGAEQTTGSKAIHQLQFPKKSVLVLGHEKNGLPAEIIRHLDL 1365

Query: 251  MAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
            +  +   G++++LNV    A+ +  Y  Q+H
Sbjct: 1366 IGEIPQFGVVRSLNVHVTGAIFMWEYAKQHH 1396


>gi|306824229|ref|ZP_07457599.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801726|ref|ZP_07695846.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552432|gb|EFM40349.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308221668|gb|EFO77960.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 320

 Score = 35.4 bits (80), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV+++
Sbjct: 254 PMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAVSMH 309


>gi|269796792|ref|YP_003316247.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269098977|gb|ACZ23413.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 237

 Score = 35.4 bits (80), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG+++R+A AF+   I    R   +    +       + H P     ++   L      
Sbjct: 103 NIGSVVRTANAFAAAEIHIVGRRRWNRRGAMVTDRYQHVRHHP-----DVEAFLAWAQDA 157

Query: 206 GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   +G+ +      +E+    ++  ++ G EG GL P+ +  +  + H+   G  +++N
Sbjct: 158 GLPVVGIDNVPGSVAIERYAFPERCVMLFGQEGAGLTPEARSASVDLVHITQFGSTRSIN 217


>gi|213962822|ref|ZP_03391082.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
 gi|213954479|gb|EEB65801.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
          Length = 242

 Score = 35.4 bits (80), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 16/147 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--YIR 191
           +++ LD+V DP N+G ++R    F  + ++   +     +  + ++  G+L  +   Y+ 
Sbjct: 98  IILALDNVQDPGNLGTLIRLCDWFGIETLLCNTQTVDCYNPKVVQATMGSLTRVAVHYVD 157

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++        + +       +  + +     E   D + LILG E  G+ P+ +  A   
Sbjct: 158 LAGF------LATCSLPVYVMDLEGENLYTTEFPEDCV-LILGNEANGITPEVRSLANKA 210

Query: 252 AHLHMPGIIK-----ALNVSNAAAVAL 273
             + +P   K     +LNV+ A A+ L
Sbjct: 211 --ITIPRFSKHQQTESLNVAMAGAIVL 235


Searching..................................................done


Results from round 2




>gi|254780603|ref|YP_003065016.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040280|gb|ACT57076.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score =  424 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA
Sbjct: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP
Sbjct: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA
Sbjct: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL
Sbjct: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK
Sbjct: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282


>gi|315121804|ref|YP_004062293.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495206|gb|ADR51805.1| tRNA/rRNA methyltransferase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 300

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 222/286 (77%), Positives = 250/286 (87%), Gaps = 4/286 (1%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS----RHTSQPENLFLYGVHT 56
           M L+   K+ KI S KDSHYAKLRRN+RD KK+Q  NQK     +H +Q  NLFLYG+HT
Sbjct: 15  MKLMPPNKNNKISSPKDSHYAKLRRNYRDRKKIQLINQKDTLQNKHITQANNLFLYGIHT 74

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           V AALNNP RKIFQLLAT+N+L RL+WDAN PHPFPVK V P TID+IVGKEAVHQGLAL
Sbjct: 75  VGAALNNPQRKIFQLLATRNSLTRLNWDANRPHPFPVKIVSPSTIDQIVGKEAVHQGLAL 134

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           ET PL SPTLD ++NSQL+++LDH+NDPHN+GAILRS+VAF C GIITT+RYSPSESAVL
Sbjct: 135 ETTPLSSPTLDTIQNSQLIIILDHINDPHNVGAILRSSVAFGCGGIITTRRYSPSESAVL 194

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AKSASGALEHIPYIRI NLTDAL K+H+W FQTIGLSS+S  PLE+EIK+DKIALILGAE
Sbjct: 195 AKSASGALEHIPYIRIGNLTDALHKIHAWQFQTIGLSSESNNPLEKEIKSDKIALILGAE 254

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GKGLR KTQETATS+AHL+MPGIIK+LNVSNAAAVALYITQNHFAK
Sbjct: 255 GKGLRQKTQETATSIAHLNMPGIIKSLNVSNAAAVALYITQNHFAK 300


>gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
 gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
          Length = 293

 Score =  308 bits (789), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 151/290 (52%), Positives = 199/290 (68%), Gaps = 13/290 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLY 52
            K +    S +DSHYA LRR  RD K+ +        QK R ++         P+ +FLY
Sbjct: 2   SKDNPNDTSDRDSHYATLRRQVRDAKRERGEIPTPQPQKRRKSNADWTPPPIAPDQVFLY 61

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AALNNP RK  +L  T+NAL RL+       PFPV+ V PQ +DK +G EA+HQ
Sbjct: 62  GLHTVRAALNNPERKPIKLSLTQNALVRLEIGPVDALPFPVEIVTPQDLDKHLGPEAIHQ 121

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ LET PL    L+A++ S LL+VLD V DPHN+GAI+R+AVAF    +ITT R+SP+E
Sbjct: 122 GVMLETRPLPPRRLEALKESPLLLVLDQVTDPHNVGAIMRTAVAFGAGAVITTMRHSPTE 181

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           S VLAKSASGALE IPYI+I+NL +AL ++H  GF +IGL S+  +PLE+    DK+AL+
Sbjct: 182 SGVLAKSASGALELIPYIQITNLAEALGELHKLGFVSIGLDSEGPRPLEETFSGDKLALV 241

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LG+EGKGLR KT++T  ++A L MPG IK+LNVSNAAA+ALY ++    +
Sbjct: 242 LGSEGKGLRQKTRDTVNALARLDMPGEIKSLNVSNAAAIALYASRQFLLR 291


>gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
 gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 295

 Score =  305 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 151/291 (51%), Positives = 196/291 (67%), Gaps = 14/291 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS---FNQKSRHTSQPENLF-----------L 51
            K      S +D+HYA LRR  RD K+ +      Q+ +  ++  + +           L
Sbjct: 2   SKDDPNDKSTRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGADDWKPPQLAPDQVHL 61

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG+HTV AAL+NP R++ +L  T NA ARLD       PFPV+ V PQ IDK++G EA+H
Sbjct: 62  YGLHTVRAALSNPQRQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQEIDKVLGPEAIH 121

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ LET PL    LDA++ S L++VLD V DPHN+GAI+RSAVAF+   +ITT R+SP+
Sbjct: 122 QGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPT 181

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ES VLAKSASGALE IPYI+I+NL D L ++H  GF ++GL S+   P+EQ     KIAL
Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +LGAEGKGLR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ    K
Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292


>gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
 gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
          Length = 295

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 151/291 (51%), Positives = 195/291 (67%), Gaps = 14/291 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQS---FNQKSRHTSQPENLF-----------L 51
            K      S +D+HYA LRR  RD K+ +      Q+ +  ++    +           L
Sbjct: 2   SKDDPNDKSTRDTHYATLRRAVRDAKRERGEIPTPQQPKRRNRGAEDWKPPQLAPDQVHL 61

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG+HTV AAL+NP R++ +L  T NA ARLD       PFPV+ V PQ IDK++G EA+H
Sbjct: 62  YGLHTVRAALSNPERQLIKLSVTLNAFARLDIGEADAQPFPVEIVSPQDIDKVLGPEAIH 121

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+ LET PL    LDA++ S L++VLD V DPHN+GAI+RSAVAF+   +ITT R+SP+
Sbjct: 122 QGVMLETRPLPVKKLDALKKSPLILVLDQVTDPHNVGAIMRSAVAFNAGAVITTIRHSPT 181

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ES VLAKSASGALE IPYI+I+NL D L ++H  GF ++GL S+   P+EQ     KIAL
Sbjct: 182 ESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLDSEGPAPIEQTFTGAKIAL 241

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +LGAEGKGLR KT+ET +++A L MPG IK+LNVSNAAA+ALY TQ    K
Sbjct: 242 VLGAEGKGLRQKTRETVSALARLDMPGEIKSLNVSNAAAIALYATQQFLGK 292


>gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 310

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 142/267 (53%), Positives = 185/267 (69%), Gaps = 8/267 (2%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           + +D+HYA LRR HRD K+    N        PE L LYG+HTV+AAL NP R   +LL 
Sbjct: 48  TPRDTHYANLRRAHRDRKRELKPN-------APEPLLLYGLHTVAAALQNPDRIRHRLLI 100

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
           T+NA ARL+ D +     P++ V P+ +D+++G EAVHQG  LET PL    LDA+ ++ 
Sbjct: 101 TRNARARLELD-DAEIDCPIEQVEPKDLDRLLGGEAVHQGACLETEPLEPLRLDALGDAT 159

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+VLD V DPHN+GAILRSA AF+ DG+ITT R+SP ES VLAK+ASGALEH+  I + 
Sbjct: 160 LLLVLDQVTDPHNVGAILRSATAFAADGLITTSRHSPRESGVLAKAASGALEHVRQIEVR 219

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL + L+++   GF+TIGL S+ +   EQ I+ +KIA++LGAEGKGLR KT+ T   +A 
Sbjct: 220 NLAETLERLSKLGFRTIGLDSEGESDFEQAIEGEKIAVVLGAEGKGLRQKTRATCDVLAR 279

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           L MPG I +LNVSNAAAVALY  +   
Sbjct: 280 LEMPGAIHSLNVSNAAAVALYAIRRRL 306


>gi|319783294|ref|YP_004142770.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 282

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 144/275 (52%), Positives = 191/275 (69%), Gaps = 6/275 (2%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALN 62
           S+K  + KD+HYAKLRR +RD K   +   + R    P        + LYG+HTV AAL+
Sbjct: 2   SDKTNTPKDTHYAKLRRAYRDEKSGGAPAFRPRQPVPPGENAADGLVRLYGLHTVRAALD 61

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           NP RKI ++L T+NA  RL+       PF  + V P+ IDKI G +AVHQG+ +E  PL 
Sbjct: 62  NPRRKIRKMLVTRNAAERLEIADLAALPFKTELVEPRDIDKITGSDAVHQGVLIEAEPLK 121

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +  LDA+ +++L++VLD + DPHN+GAILRSAVAF    +ITT R+SP ES VLAKSASG
Sbjct: 122 AKRLDALGDAKLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALEHI  I + NL +AL ++H  GF+T+GL SD+   LE+    +KIAL+LGAEGKGLR 
Sbjct: 182 ALEHIDQIEVKNLAEALGQLHEAGFRTMGLDSDAPAELEKSFAGEKIALVLGAEGKGLRQ 241

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           KT+ET T++A L MPG I +LNVSNAAA++LY+ +
Sbjct: 242 KTRETVTTLARLDMPGAIHSLNVSNAAAISLYVAR 276


>gi|260460674|ref|ZP_05808924.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
           opportunistum WSM2075]
 gi|259033251|gb|EEW34512.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium
           opportunistum WSM2075]
          Length = 282

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 148/275 (53%), Positives = 186/275 (67%), Gaps = 6/275 (2%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALN 62
           S K  + KD+HYAKLRR  RD K   +   K R    P        + LYG+HTV AAL+
Sbjct: 2   SNKTNTPKDTHYAKLRRAFRDEKSGGAPAFKPRQPVPPGENAGDGLVRLYGLHTVRAALD 61

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           NP R+I ++L T+NA  RL+       PF  + V P+ IDKI G +AVHQG+ +E  PL 
Sbjct: 62  NPRRRIKKMLVTRNAAERLEIADLAALPFSAELVEPRDIDKITGSDAVHQGVLIEAEPLK 121

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              LDA+ +++L++VLD V DPHN+GAILRSAVAF    +ITT R+SP ES VLAKSASG
Sbjct: 122 PKRLDALGDTKLVLVLDQVTDPHNVGAILRSAVAFGAGALITTARHSPQESGVLAKSASG 181

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALEHI  I + NL DAL ++H  GFQTIGL SD    LE     D++AL+LGAEGKGLR 
Sbjct: 182 ALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDRVALVLGAEGKGLRQ 241

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           KT+ET T++A L MPG I++LNVSNAAAV+LY  +
Sbjct: 242 KTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 276


>gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
           intermedium LMG 3301]
 gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
           intermedium LMG 3301]
          Length = 303

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 141/276 (51%), Positives = 190/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 26  TPKDSHYARLRRQHRD-QKAGTEGKSPRKPQRPSISASAVTEGTVRLYGLHTVRAAVENP 84

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            R+I ++LAT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 85  ERRILRMLATRNGFARLEIGEAESLPFPVEIVEPRDIDKETGSEAVHQGVMIEAEPLRAR 144

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +++S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 145 KLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++HS GFQTIGL S+    +E  +   +IAL+LGAEGKGLR KT
Sbjct: 205 ELISHIEVRNLAEAIEELHSLGFQTIGLDSEGPLEMEATLSGGRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|163759379|ref|ZP_02166465.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
           DFL-43]
 gi|162283783|gb|EDQ34068.1| RNA methyltransferase, TrmH family, group 3 [Hoeflea phototrophica
           DFL-43]
          Length = 300

 Score =  288 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 135/285 (47%), Positives = 191/285 (67%), Gaps = 16/285 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKK----MQSFNQKSRH------------TSQPENLFLYGVHTV 57
           S +D+HYAKLRR+HRD K+    +     + +                 E+++LYG+HTV
Sbjct: 12  SNRDTHYAKLRRSHRDAKREREGLPPVQPRGKRDLPARKGALYAERGAAESVYLYGLHTV 71

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            AAL+NP+R+I  L AT+NAL RL+   +   PFPV+ V PQ ID+++G +AVHQG+ LE
Sbjct: 72  RAALDNPARQITSLKATRNALMRLEIAEDAELPFPVELVAPQEIDRLLGDDAVHQGVLLE 131

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             PL +  L  + ++ L+++LD V DPHN+GAI+RSAVAF    ++TT+R+SP ES VLA
Sbjct: 132 ARPLSARPLTDLGDATLVVILDQVTDPHNVGAIMRSAVAFGAGALVTTQRHSPQESGVLA 191

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+ASGALE I +I + NL  A++ + + GF T+GL S+   P+E  +K  +IA++LGAEG
Sbjct: 192 KAASGALEMIDHIEVRNLASAIEDIKAQGFTTVGLDSEGPSPIEAGLKGARIAMVLGAEG 251

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           KGLR KT+ET   +  L MPG IK+LNVSNA A+ALY  Q +  +
Sbjct: 252 KGLRQKTRETVDVLTRLDMPGAIKSLNVSNATAIALYAAQQYLNR 296


>gi|86357288|ref|YP_469180.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86281390|gb|ABC90453.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 296

 Score =  288 bits (738), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 147/267 (55%), Positives = 189/267 (70%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK R  ++        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D       P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLFTTQNALARLEIDVETL-GIPFEIVSPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKVALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET T++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281


>gi|90417781|ref|ZP_01225693.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337453|gb|EAS51104.1| RNA methyltransferase, TrmH family, group 3 [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 284

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 142/278 (51%), Positives = 186/278 (66%), Gaps = 12/278 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKK----------MQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           + KD+HYA LRR HRD K+          ++   Q  R  +    + LYG+HTV+AALNN
Sbjct: 9   TPKDTHYATLRRAHRDRKRTDGGAAPAGALKRRPQPGR-PAPAGRVRLYGIHTVAAALNN 67

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
           P RK+  LL T+NALARL+  A      PV+ V P+ +D  +G EAVHQG+ LET PL +
Sbjct: 68  PHRKLHSLLVTRNALARLE-IAEDAIRCPVEMVEPKRLDAELGGEAVHQGVMLETEPLPA 126

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L  +  ++L++VLD V DPHN+GAILRSA AF  D ++TT R+SP ES VLAK+ASGA
Sbjct: 127 IRLSDLGKARLVIVLDQVTDPHNVGAILRSATAFGADALVTTARHSPQESGVLAKAASGA 186

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           LEH+  I + NL DAL  +   GF+TIGL SD  +  E  +  ++IA++LGAEGKGLR K
Sbjct: 187 LEHVTQIEVVNLADALSALSKQGFRTIGLDSDGPESFEASLSGERIAIVLGAEGKGLRQK 246

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           TQ T  ++A L MPG I++LNVSNAAA+ALY T+ H  
Sbjct: 247 TQATVDALARLEMPGAIRSLNVSNAAAIALYATRRHLG 284


>gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi
           ATCC 49188]
          Length = 286

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 141/276 (51%), Positives = 190/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 9   TPKDSHYARLRRQHRD-QKAVTEGKSPRKPQRPSISAGAVTEGTVRLYGLHTVRAAVENP 67

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 68  ERKILRMRATRNGFARLEIGEAESLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRAR 127

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +++S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 128 KLSELKDSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++HS GFQTIGL S+  + +E  +   +IAL+LGAEGKGLR KT
Sbjct: 188 EMISHIEVRNLAEAIEELHSLGFQTIGLDSEGPQEMEATLSGGRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|150396189|ref|YP_001326656.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
 gi|150027704|gb|ABR59821.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium medicae
           WSM419]
          Length = 291

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 143/275 (52%), Positives = 188/275 (68%), Gaps = 13/275 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLY 52
            K      S +D+HYA LRR HRD ++ +      R   +             P+ + LY
Sbjct: 2   SKDKTGDKSARDTHYANLRRAHRDGRRERGEIPTPRQDKRGKPSADWKPPALAPDQVLLY 61

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AAL+NP R+I +L  T+NA ARLD   +   PFPV+TV PQ +D+I+G +A+HQ
Sbjct: 62  GLHTVRAALDNPERRIIRLSVTQNAAARLDLGDSAALPFPVETVTPQELDRILGPDAIHQ 121

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ LET PL    L+A+R+  L++VLD V DPHN+GAI+RSAVAF    +ITT R+SP+E
Sbjct: 122 GVMLETRPLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTE 181

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           S VLAKSASGALE IPYI+ISNL D + ++H+ GF TIGL S+  +PLE     DKIAL+
Sbjct: 182 SGVLAKSASGALELIPYIQISNLADTIDELHALGFMTIGLDSEGPQPLEGTFAGDKIALV 241

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           LG+EGKGLR KT++T  ++A L MPG IK+LNVSN
Sbjct: 242 LGSEGKGLRQKTRQTVKALARLDMPGAIKSLNVSN 276


>gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 296

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 144/267 (53%), Positives = 186/267 (69%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +   +        P+ + LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPQAQKRKRGGEDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D       P + V PQ IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLFVTQNALARLEVDVE-ALGIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A++ S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+++NL DAL ++H  GF TIGL S+   PLE     +K+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET  ++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVNALARLDMPGSIKSLNVSN 281


>gi|218682806|ref|ZP_03530407.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium etli CIAT
           894]
          Length = 296

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 146/267 (54%), Positives = 187/267 (70%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK R            P+ + LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPPPQKRRRGGDDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ DA      P + V PQ IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLFVTQNALARLEIDAETL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+++NL DAL ++H  GF TIGL S+   PLE     +K+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKLALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET  ++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281


>gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 137/274 (50%), Positives = 183/274 (66%), Gaps = 5/274 (1%)

Query: 11  KIFSLKDSHYAKLRRNHRDYK---KMQSFNQKSRHTSQPENLF-LYGVHTVSAALNNPSR 66
           K  + ++SHYA+LRR +RD K      S N K +  S  + +  LYG+H+V AAL NP R
Sbjct: 2   KEKTSQNSHYARLRRRYRDTKASSSRSSKNMKKKTASLQQGIIHLYGIHSVQAALKNPKR 61

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
               L  T+NAL RL+   +  +P PV    P+ +D +VG EAVHQG+ LET+PL    L
Sbjct: 62  IFKCLYVTQNALKRLNMSES-DYPCPVTLCTPKYLDSLVGSEAVHQGIVLETSPLKPCKL 120

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + N+ L++V+D + DPHN+GAI+RSAVAF    +ITT R+SP ES VLAK+ASGALE 
Sbjct: 121 SELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAKALITTCRHSPHESGVLAKAASGALEM 180

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I YI + NL + LQ++H  GF + GL S+  +PLE  +   KIAL+LGAEGKGLR KT+E
Sbjct: 181 IHYITVRNLAETLQEIHQTGFTSFGLDSEGDQPLETTLTGSKIALVLGAEGKGLRKKTRE 240

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T  ++A L MPG IK+LNVSNAA +ALY+   + 
Sbjct: 241 TVCALARLDMPGNIKSLNVSNAATIALYVAHKYL 274


>gi|190891338|ref|YP_001977880.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
           652]
 gi|190696617|gb|ACE90702.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
           652]
          Length = 296

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 147/267 (55%), Positives = 190/267 (71%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +  ++        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D   P   P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET T++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281


>gi|227821738|ref|YP_002825708.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii
           NGR234]
 gi|227340737|gb|ACP24955.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium fredii
           NGR234]
          Length = 291

 Score =  285 bits (729), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 138/275 (50%), Positives = 184/275 (66%), Gaps = 13/275 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLY 52
            K      S +DSHYA LRR HRD ++ +      R   +             P+ +FLY
Sbjct: 2   SKDKSGDKSARDSHYATLRRAHRDARRERGEIPTPRPDKRRKLPADWKPPALAPDEVFLY 61

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AAL+NP R I +L  T+NA ARL+        FPV+ V PQ +D+ +G +A+HQ
Sbjct: 62  GLHTVRAALDNPDRTIIRLRVTQNAAARLELGDLSALRFPVEIVTPQDLDRALGPDAIHQ 121

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ LET PL    L+A+ +  L+++LD V DPHN+GAI+RSAVAF    +ITT R+SP+E
Sbjct: 122 GVMLETRPLPHRKLEALSDCPLILLLDQVTDPHNVGAIMRSAVAFEAGALITTMRHSPTE 181

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           S VLAKSASGALE IPYI+I+NL D ++++H  GFQTIGL S+  +PLE      K+AL+
Sbjct: 182 SGVLAKSASGALELIPYIQITNLADTIEELHKLGFQTIGLDSEGPQPLEDTFSGGKVALV 241

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           LG+EGKGLR KT++T T++A L MPG IK+LNVSN
Sbjct: 242 LGSEGKGLRQKTRQTVTALARLDMPGAIKSLNVSN 276


>gi|327191383|gb|EGE58409.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli
           CNPAF512]
          Length = 296

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 146/267 (54%), Positives = 189/267 (70%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +  ++        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D       P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDVE-ALDIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET T++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVTALARLDMPGAIKSLNVSN 281


>gi|307322674|ref|ZP_07602003.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           AK83]
 gi|306891673|gb|EFN22530.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           AK83]
          Length = 291

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 142/275 (51%), Positives = 186/275 (67%), Gaps = 13/275 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLY 52
            K      S +D+HYA LRR HRD ++ +      R   +             P+ + LY
Sbjct: 2   SKDKTGDKSARDTHYANLRRAHRDARRERGEIPTPRQDKRGKPPADWKPPALAPDQVLLY 61

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AAL+NP R+I +L  T+NA ARLD       PFP +TV PQ +D+I+G +A+HQ
Sbjct: 62  GLHTVRAALDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQ 121

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ LET PL    L+A+R+  L++VLD V DPHN+GAI+RSAVAF    +ITT R+SP+E
Sbjct: 122 GVMLETQPLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTE 181

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           S VLAKSASGALE IPYI+I+NL D L+++H  GF TIGL S+  +PLE     DKIAL+
Sbjct: 182 SGVLAKSASGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALV 241

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           LG+EGKGLR KT++T  ++A L MPG IK+LNVSN
Sbjct: 242 LGSEGKGLRQKTRQTVKALARLDMPGAIKSLNVSN 276


>gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28]
 gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           M5-90]
          Length = 303

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 26  TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 85  QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
           2308 A]
 gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
           2308 A]
 gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 303

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 141/276 (51%), Positives = 189/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 26  TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+   +   PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 85  QRKILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|209548917|ref|YP_002280834.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 296

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 144/267 (53%), Positives = 187/267 (70%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK R  ++        P+ + LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPQPQKRRRGAEDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D       P + V PQ IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLFVTQNALARLEVDVETL-GIPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+++NL DAL ++H  GF TIGL S+    LE     +K+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAALEGTFSGEKVALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET  ++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281


>gi|17987024|ref|NP_539658.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
          Length = 303

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 140/276 (50%), Positives = 187/276 (67%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 26  TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 85  QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT  +SP E+ VLAK+ASGAL
Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAASGAL 204

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
           Cudo]
 gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
           Cudo]
          Length = 303

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 26  TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 85  QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|15965091|ref|NP_385444.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307315061|ref|ZP_07594646.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           BL225C]
 gi|15074271|emb|CAC45917.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306898900|gb|EFN29550.1| RNA methyltransferase, TrmH family, group 3 [Sinorhizobium meliloti
           BL225C]
          Length = 291

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 142/275 (51%), Positives = 186/275 (67%), Gaps = 13/275 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-------------PENLFLY 52
            K      S +D+HYA LRR HRD ++ +      R   +             P+ + LY
Sbjct: 2   SKDKTGDKSARDTHYANLRRAHRDARRERGEIPTPRQDKRAKLSADWKPPALAPDQVLLY 61

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           G+HTV AAL+NP R+I +L  T+NA ARLD       PFP +TV PQ +D+I+G +A+HQ
Sbjct: 62  GLHTVRAALDNPERRIIRLSVTQNAAARLDLGDLTALPFPTETVMPQELDRILGPDAIHQ 121

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+ LET PL    L+A+R+  L++VLD V DPHN+GAI+RSAVAF    +ITT R+SP+E
Sbjct: 122 GVMLETQPLPHRKLEALRDCPLILVLDQVTDPHNVGAIMRSAVAFDAGALITTMRHSPTE 181

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           S VLAKSASGALE IPYI+I+NL D L+++H  GF TIGL S+  +PLE     DKIAL+
Sbjct: 182 SGVLAKSASGALELIPYIQITNLADTLEELHELGFMTIGLDSEGPQPLEGTFAGDKIALV 241

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           LG+EGKGLR KT++T  ++A L MPG IK+LNVSN
Sbjct: 242 LGSEGKGLRQKTRQTVKALARLDMPGAIKSLNVSN 276


>gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
 gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
          Length = 286

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 9   TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPTIAASAVAEGTVRLYGLHTVRAAVENP 67

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 68  QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC
           25840]
          Length = 303

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 26  TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 84

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 85  QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 144

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 145 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 204

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 205 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEVTLSGNRIALVLGAEGKGLRQKT 264

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 265 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 300


>gi|241204147|ref|YP_002975243.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 296

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 141/267 (52%), Positives = 182/267 (68%), Gaps = 14/267 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS--FNQKSRHTSQPENLF-----------LYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +      +     +  + +           LYG+HTV AA
Sbjct: 16  SAKDTHYATLRRAHRDAKRERGEIPTPQPHKRKRGGDDWKPPALAPDQVHLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK   L  T+NALARL+ D       P + V PQ IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKITLFVTQNALARLEVDVE-ALGMPFEIVSPQEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A++ S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKESPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGALE IPYI+++NL DAL ++H  GF TIGL S+   PLE     +K+AL+LG+EGKGL
Sbjct: 195 SGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGEKVALVLGSEGKGL 254

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSN 267
           R KT+ET  ++A L MPG IK+LNVSN
Sbjct: 255 RQKTRETVNALARLDMPGAIKSLNVSN 281


>gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|189024398|ref|YP_001935166.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
 gi|254689467|ref|ZP_05152721.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 6
           str. 870]
 gi|254697605|ref|ZP_05159433.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254730496|ref|ZP_05189074.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 4
           str. 292]
 gi|256257714|ref|ZP_05463250.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 9
           str. C68]
 gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
           str. 9-941]
 gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
 gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
          Length = 286

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 141/276 (51%), Positives = 189/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 9   TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+   +   PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 68  QRKILRMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330]
 gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365]
 gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
 gi|254693953|ref|ZP_05155781.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 3
           str. Tulya]
 gi|254701991|ref|ZP_05163819.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 5
           str. 513]
 gi|254704533|ref|ZP_05166361.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis bv. 3
           str. 686]
 gi|254706572|ref|ZP_05168400.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           M163/99/10]
 gi|254710319|ref|ZP_05172130.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           B2/94]
 gi|254714316|ref|ZP_05176127.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M644/93/1]
 gi|254717753|ref|ZP_05179564.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M13/05/1]
 gi|256031813|ref|ZP_05445427.1| RNA methyltransferase, TrmH family, group 3 [Brucella pinnipedialis
           M292/94/1]
 gi|256061333|ref|ZP_05451477.1| RNA methyltransferase, TrmH family, group 3 [Brucella neotomae
           5K33]
 gi|256113812|ref|ZP_05454605.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           bv. 3 str. Ether]
 gi|256159988|ref|ZP_05457701.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti
           M490/95/1]
 gi|256255213|ref|ZP_05460749.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti B1/94]
 gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
           4915]
 gi|260168947|ref|ZP_05755758.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. F5/99]
 gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
 gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330]
 gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC
           23365]
 gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
           ATCC 23457]
 gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
           4915]
 gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO1]
          Length = 286

 Score =  281 bits (720), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 9   TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 68  QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|110633438|ref|YP_673646.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110284422|gb|ABG62481.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 276

 Score =  281 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 135/276 (48%), Positives = 190/276 (68%), Gaps = 3/276 (1%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
              +K  + KDSHYA+LRR HR+     + N+++        + LYG+HTV AA++NP+R
Sbjct: 2   SDHKKTGTPKDSHYARLRRAHRE---RTAPNERAGADLPEGIVRLYGLHTVRAAIDNPAR 58

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            I Q+L T+NA  RL        PFPV+ V P+ ID +VG +AVHQG+ +E         
Sbjct: 59  SIRQMLVTRNAAQRLGIADPSTLPFPVEIVEPKAIDALVGADAVHQGVLVEATARTPKPF 118

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + ++ L++VLD V DPHN+GAI+RSAVAF  D ++TT R+SP+ES VLAK+ASGALEH
Sbjct: 119 SGLEDASLVLVLDQVTDPHNVGAIMRSAVAFGADALVTTARHSPAESGVLAKAASGALEH 178

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I +I + NL +A++++H+ GF T+GL S+  + LE+ ++  KIAL+LG+EGKGLR KT+E
Sbjct: 179 IDHIEVRNLANAIEELHAAGFLTVGLDSEGPQRLEKTLQGKKIALVLGSEGKGLRQKTRE 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           T  ++A L MPG I +LNVSNAAAVALYI +   A+
Sbjct: 239 TVRALARLDMPGAIHSLNVSNAAAVALYIARRSLAE 274


>gi|256044897|ref|ZP_05447801.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 286

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 140/276 (50%), Positives = 187/276 (67%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 9   TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 68  QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT  +SP E+ VLAK+ASGAL
Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSPQETGVLAKAASGAL 187

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|254719306|ref|ZP_05181117.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. 83/13]
 gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
 gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
          Length = 286

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 142/276 (51%), Positives = 188/276 (68%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR HRD +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 9   TPKDSHYARLRRQHRD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 68  QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRAR 127

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP ES VLAK+ASGAL
Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQESGVLAKAASGAL 187

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 302

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 142/269 (52%), Positives = 183/269 (68%), Gaps = 14/269 (5%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ---------PENLFLYGVHTVS 58
            S KD+HYA LRR HRD K+ +        QK +             P+ ++LYG+HTV 
Sbjct: 19  KSAKDTHYATLRRAHRDAKRERGEIPTPVPQKRKRPGADDWKPPALAPDQVYLYGLHTVR 78

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           AAL NP RK  +L  T+NAL RL+         P + V PQ IDK++G EA+HQG+ LET
Sbjct: 79  AALANPERKNIKLSTTQNALVRLEIGPVDALGIPFEIVSPQDIDKVLGPEAIHQGVMLET 138

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF    +ITT+R+SP+ES VLAK
Sbjct: 139 RPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFDAAAVITTQRHSPTESGVLAK 198

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           SASGALE IPYI+I+NL DAL ++H  GF +IGL S+   PLE     +K+AL+LG+EGK
Sbjct: 199 SASGALELIPYIQITNLADALGELHRLGFVSIGLDSEGPAPLEGTFSGEKVALVLGSEGK 258

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GLR KT+ET  ++A L MPG IK+LNVSN
Sbjct: 259 GLRQKTRETVNALARLDMPGAIKSLNVSN 287


>gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445]
 gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC
           23445]
          Length = 286

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 140/276 (50%), Positives = 187/276 (67%), Gaps = 10/276 (3%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVSAALNNP 64
           + KDSHYA+LRR H D +K  +  +  R   +P           + LYG+HTV AA+ NP
Sbjct: 9   TPKDSHYARLRRQHHD-QKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENP 67

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            RKI ++ AT+N  ARL+       PFPV+ V P+ IDK  G EAVHQG+ +E  PL + 
Sbjct: 68  QRKILRMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTR 127

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L  +R S LL+VLD V DPHN+GAI+RSAVAF    +ITT R+SP E+ VLAK+ASGAL
Sbjct: 128 KLSELRESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSPQETGVLAKAASGAL 187

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           E I +I + NL +A++++H+ GFQTIGL S     +E  +  ++IAL+LGAEGKGLR KT
Sbjct: 188 ELIAHIEVRNLAEAIEELHTLGFQTIGLDSQGPLEMEATLSGNRIALVLGAEGKGLRQKT 247

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +ET T++A L MPG IK+LNVSNAAA++LY  + + 
Sbjct: 248 RETVTALARLDMPGEIKSLNVSNAAAISLYAAERYL 283


>gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB18]
 gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB18]
          Length = 275

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 123/269 (45%), Positives = 165/269 (61%), Gaps = 1/269 (0%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
           F  K     K  ++ R+ K+      + R +       LYG HTV AAL NP R I +LL
Sbjct: 4   FERKPRFGRKPDKSSRNPKEAGRQPWRDRESRPDGPAILYGWHTVVAALGNPQRTIRKLL 63

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
            ++NA  RL  D N+    P + V P  ID+ +G +AVHQGL  E  PL  P LD +   
Sbjct: 64  LSENAARRLA-DENIDTRVPPEIVRPSLIDQRLGPDAVHQGLLAEADPLEPPELDTLPQQ 122

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++VLD + DPHN+GAILRSA AF+   I+TT R+SP  + VLAKSASGALE +P + +
Sbjct: 123 GIVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPMVTV 182

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  AL  ++  GFQT+GL S+    L     +  +AL+LGAEGKGLR  T++T +++A
Sbjct: 183 QNLARALTDLNDRGFQTVGLDSEGGDDLATIPLSAPLALVLGAEGKGLRQLTRQTCSALA 242

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            L MPG IK+LNVSNAAA+ALYI  +   
Sbjct: 243 RLDMPGEIKSLNVSNAAALALYIGASRLG 271


>gi|240850284|ref|YP_002971677.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267407|gb|ACS50995.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 276

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 134/274 (48%), Positives = 182/274 (66%), Gaps = 5/274 (1%)

Query: 11  KIFSLKDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           K  + ++SHYA+LRR +RD K    +  +  +K   + Q   + LYG+H+V AAL NP R
Sbjct: 2   KEKTSQNSHYARLRRRYRDTKGSPSRSFTHLKKKAASLQQGIIHLYGIHSVQAALENPKR 61

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            +  L  T+NAL RL+   +  +P  V    P+ +D +VG EAVHQG+ LET PL    L
Sbjct: 62  ILKCLYVTQNALKRLNISES-DYPCSVTLCTPKYLDSLVGSEAVHQGIVLETLPLKPCKL 120

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + N+ L++V+D + DPHN+GAI+RSAVA     +ITT R+SP ES VLAK+ASGALE 
Sbjct: 121 SELTNTDLVIVMDQITDPHNVGAIMRSAVALKAKALITTCRHSPHESGVLAKAASGALEM 180

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           I YI + NL +ALQ++H  GF + GL S+  KPLE  +  +KIAL+LGAEGKGLR KT+E
Sbjct: 181 IHYITVRNLAEALQELHQTGFSSFGLDSEGDKPLETALTGNKIALVLGAEGKGLRKKTRE 240

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T  ++  L MPG IK+LNVSNAA +ALY+   + 
Sbjct: 241 TVCALTRLDMPGNIKSLNVSNAATIALYVAHKYL 274


>gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris
           CGA009]
 gi|192292212|ref|YP_001992817.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris TIE-1]
 gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009]
 gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris TIE-1]
          Length = 275

 Score =  276 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 115/265 (43%), Positives = 160/265 (60%), Gaps = 1/265 (0%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  +++     R   +   F +  R       + LYG HTV+AAL NP RK  +L  T+N
Sbjct: 7   NPRFSRRDGPPRGKPRPAGFRRDPRERDGDGPVILYGWHTVTAALANPQRKFRKLWLTEN 66

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A  RL  + N+      + V P  ID+ +G +AVHQG+  E  PL  P +D +    +++
Sbjct: 67  AARRLAEE-NIDTRIAPEIVRPSEIDRQLGPDAVHQGMLAEADPLQGPRIDTLPQHGIVL 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+GAILRSA AF+   I+TT R+SP  + VLAKSASGALE +P + + NL 
Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLA 185

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            AL +++  GF T+GL S+    L        +AL+LGAEGKGLR  T++T  ++A L M
Sbjct: 186 RALTELNDRGFLTVGLDSEGDDDLAAVELRQPLALVLGAEGKGLRQLTRQTCNTVARLDM 245

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
           PG IK+LNVSNAAA+ALYI  +   
Sbjct: 246 PGEIKSLNVSNAAALALYIGASRLG 270


>gi|119474664|ref|ZP_01615017.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2143]
 gi|119450867|gb|EAW32100.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2143]
          Length = 247

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 124/244 (50%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDK 103
           E  +++G+H V A L   S +I +L   +    +   +  L         KTVP + +DK
Sbjct: 3   EEHWVFGIHAVEALLQGQSNRIEELWLQQGRNDKRINELQLHARQVGVKCKTVPREELDK 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
            V  +  HQG+   T P        L   LD + +  LL++LD V DPHN+GA LR+A A
Sbjct: 63  QV--DGRHQGVVAFTKPAQTLRDRDLKEMLDGLDHPPLLLILDGVTDPHNLGACLRTADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  K  S   +A + K A GA E +PYI+++NL   ++ +   G    G + ++
Sbjct: 121 AGVDAVIAPKDSSAPLNATVRKVACGAAEVVPYIQVTNLARTMKDIQGRGIWITGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++ + Q      +AL++GAEGKG+R  T+E    + +L M G + +LNVS A  V L+  
Sbjct: 181 EQSVYQANLTGPVALVMGAEGKGMRRLTRENCDYLINLPMAGSVSSLNVSVATGVCLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|192360670|ref|YP_001983449.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190686835|gb|ACE84513.1| RNA methyltransferase, TrmH family, group 3 [Cellvibrio japonicus
           Ueda107]
          Length = 249

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 13/245 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIV 105
             +YG+H V A L +  +++ ++   +     RL   A+      +    V    +D +V
Sbjct: 4   ELVYGLHAVQALLKSAPQRVLEIYVLQGRQDQRLQKIAHAAELNQIHCNLVSRNKLDDMV 63

Query: 106 GKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +E  HQG+     P        L   L+ +     L+VLD V DPHN+GA +RSA A  
Sbjct: 64  SEE-NHQGVVARCTPGETYDEAYLFSLLETLDEPPFLLVLDGVTDPHNLGACMRSAEAAG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   + V  K A GA E +P+I ++NL   L+K+   G    G + ++ +
Sbjct: 123 VHAVIAPKDKSAGLTPVARKVACGAAEVLPFIPVTNLARTLKKLQEKGIWLFGAAGEASQ 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--T 276
            L Q      IA+++GAEG GLR  TQET   + H+ M G + +LNVS A  V L+    
Sbjct: 183 SLYQTRLTGPIAILMGAEGDGLRRLTQETCDQLMHIPMAGSVSSLNVSVATGVCLFEAVR 242

Query: 277 QNHFA 281
           Q   A
Sbjct: 243 QRQVA 247


>gi|120555299|ref|YP_959650.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325148|gb|ABM19463.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Marinobacter aquaeolei
           VT8]
          Length = 245

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 116/243 (47%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             +++G H V A L     ++ ++      ++   +   DA      P K V  + +D+ 
Sbjct: 3   QEYVFGWHAVDAVLKREPERLQRVWIQTGRQDKRVKSVTDALDGLGVPWKVVHRKELDER 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V    VHQG+    A     T D +            L+VLD V DPHN+GA +R+A A 
Sbjct: 63  VS--GVHQGVVAAVAESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S S + V  K A GA E +P++R++NL   L+++   G   IG + ++ 
Sbjct: 121 GVQAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRELKDQGVWLIGTAGEAD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEGKG+R  T+E    + ++ M G + +LNVS A  V LY   
Sbjct: 181 ATLYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEAL 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|316933379|ref|YP_004108361.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris DX-1]
 gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris DX-1]
          Length = 275

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/265 (43%), Positives = 165/265 (62%), Gaps = 1/265 (0%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +S +++     R   +   F + +R       + LYG HTV+AAL NP RK  +L  T+N
Sbjct: 7   NSRFSRRDGPPRGKPRPAGFRRDARERDGDGPVILYGWHTVTAALANPRRKFRKLWLTEN 66

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A  +L  D N+      + V P  ID+ +G +AVHQG+  E   L +P +D +    +++
Sbjct: 67  AARKLA-DENIDTRIAPEIVRPSEIDRRLGPDAVHQGMLAEADALETPRIDTLPEHGIVL 125

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+GAILRSA AF+   I+TT R+SP  + VLAKSASGALE +P + + NL+
Sbjct: 126 VLDQITDPHNVGAILRSAAAFAVQAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLS 185

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            AL +++  GF T+GL S+ +  L        +AL+LGAEGKGLR  T++T T++A L M
Sbjct: 186 RALTELNERGFLTVGLDSEGEDDLAAVALRQPLALVLGAEGKGLRQLTRQTCTTVARLDM 245

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
           PG IK+LNVSNAAA+ALYI  +   
Sbjct: 246 PGEIKSLNVSNAAALALYIGASRLG 270


>gi|255659335|ref|ZP_05404744.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
           DSM 20544]
 gi|260848417|gb|EEX68424.1| RNA methyltransferase, TrmH family, group 3 [Mitsuokella multacida
           DSM 20544]
          Length = 289

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 138/287 (48%), Gaps = 14/287 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65
           + ++    ++    K  +    +K+ QS  +  R     E  +  L G + V+ AL +  
Sbjct: 2   EQKRKTRPQERRSRKFEKEAPRHKRPQSETEPKRREEPRELPDDVLVGRNAVTEALKSG- 60

Query: 66  RKIFQLL-ATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           R I +L  A+ +    +   A L       V+ V    I+ + G    HQG+    AP+ 
Sbjct: 61  RGINKLWIASGDREGSVAEIAALAKERGIVVQYVERAKIEALAGGHR-HQGVLAYVAPVP 119

Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              L+ +         +  L++LD + DPHN+GA+LR+A A    GI+  KR S S +A 
Sbjct: 120 YAELEDILKAAEAKGEAPFLVLLDELEDPHNLGALLRTADATGVHGILIPKRRSVSLNAT 179

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           +AK+++GA+E++P  RI N+   L+K+   GF   G   D +K   +      + L++G+
Sbjct: 180 VAKTSAGAVEYVPVARIGNIAQTLKKLKEKGFWVAGADMDGEKAYYEADLTGPLVLVVGS 239

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           EGKG+   T+E    +  + M G I +LN S A ++ +Y +     +
Sbjct: 240 EGKGMSRLTKEACDFIVRMPMVGRINSLNASVAGSILMYESMRQRLQ 286


>gi|311693514|gb|ADP96387.1| RNA methyltransferase, TrmH family, group 3 [marine bacterium HP15]
          Length = 245

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVK--TVPPQTIDKI 104
             F++G H V A L     +  Q+   T     R+    +      VK   V  + +D+ 
Sbjct: 3   GEFVFGWHAVEAVLKREPERFQQVWIQTGRQDKRVKSITDTLDGLGVKWKVVHRKELDER 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V    VHQG+    +     T D +            L+VLD V DPHN+GA +R+A A 
Sbjct: 63  VS--GVHQGVVAAVSESREWTEDDLLAQLAASDKPPFLLVLDGVTDPHNLGACMRTADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S S + V  K A GA E +P++R++NL   L+ +   G   IG + ++ 
Sbjct: 121 GVQAVIVPKDKSASLTPVARKVACGAAETVPFVRVTNLARFLRSLQDQGVWLIGTAGEAD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEGKG+R  T+E    + ++ M G + +LNVS A  V LY   
Sbjct: 181 ATLYQADFKGPVALVMGAEGKGMRRLTREHCDQLINIPMLGHVDSLNVSVATGVCLYEAL 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|197287185|ref|YP_002153057.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           HI4320]
 gi|194684672|emb|CAR46614.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           HI4320]
          Length = 247

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 109/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
              +YG+H V A L     +  ++   K    R       A       V+    Q +D  
Sbjct: 3   EDIIYGIHAVKALLERDPTRFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQ 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA A  
Sbjct: 63  T-EGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   L+ +       +G + ++  
Sbjct: 122 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 182 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|260584968|ref|ZP_05852712.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260157398|gb|EEW92470.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 282

 Score =  273 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 17/277 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           ++S+  K  +     K+ ++   K    S    Q    F+YG H V  AL  P R + +L
Sbjct: 6   RNSNRRKGSQPKGFKKEAKAPRPKYTPESSSNEQESTDFVYGRHAVREALQQPER-VNKL 64

Query: 72  LATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
              +    +      D    H   ++ VP   +  +VG E VHQG+    A     TL+ 
Sbjct: 65  WVQEALSGKEITPIIDLAKEHRIQIQNVPKAKLQDLVG-EVVHQGVVASIAAYEYATLED 123

Query: 129 V-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           V            +++LD + DP+N+G+ILR+A A    GII  KR S S ++ +AK+++
Sbjct: 124 VFEKAQEKNEDPFILILDGIEDPYNLGSILRTADATGVHGIIIPKRRSVSLTSTVAKAST 183

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA+EH+P +R++NLT  ++++   G    G          Q      IA+++G EGKG+ 
Sbjct: 184 GAIEHVPVVRVTNLTQTIEQLKERGVWVFGTDMKG-TDYRQWNTKGPIAIVMGNEGKGVS 242

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              ++    M  + M G +++LN S A+A+ +Y    
Sbjct: 243 RIVKDAVDEMITIPMTGHVQSLNASVASALMMYEVFR 279


>gi|260599471|ref|YP_003212042.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter
           turicensis z3032]
 gi|260218648|emb|CBA33967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Cronobacter
           turicensis z3032]
          Length = 243

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L +   +  ++   K    +       A      PV+    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLESAPERFQEVFILKGREDKRLLPLIHALEAQGVPVQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A      L++LD V DPHN+GA LRSA A  
Sbjct: 62  AD-GAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|156932411|ref|YP_001436327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156530665|gb|ABU75491.1| hypothetical protein ESA_00190 [Cronobacter sakazakii ATCC BAA-894]
          Length = 243

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A      PV+    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVPVQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A      L++LD V DPHN+GA LRSA A  
Sbjct: 62  AD-GAVHQGIVARVKPGRQYGENDLPDLLAAHAQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 308

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 116/279 (41%), Positives = 171/279 (61%), Gaps = 2/279 (0%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
             S+   ++ F+ K       +  +R  K       + R ++    + LYG H+V+ AL 
Sbjct: 28  DTSEPMKDRKFTSKGPRGGA-KPFNRPGKSAGRPAWRDRDSASDGPVILYGWHSVTMALQ 86

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           NP+R+I +L  T+NA  RL  + N+      + V PQ ID+++  +AVHQGL  E  PL 
Sbjct: 87  NPARRIRKLTLTENAARRLAEE-NIETRVTPEIVRPQEIDRLLSPDAVHQGLLAEADPLP 145

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           SP ++ +    +++VLD + DPHN+GAILRSA AF+   I+TT R+SP  + VLAK+ASG
Sbjct: 146 SPDIETLTPEGMVLVLDQITDPHNVGAILRSAAAFAVKAIVTTARHSPEATGVLAKAASG 205

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALE +P + + NL  AL  ++  GFQT+GL S+  + L      + +AL+LGAEGKGLR 
Sbjct: 206 ALELVPVVTVQNLARALTALNERGFQTVGLDSEGSEDLSNVALREPLALVLGAEGKGLRQ 265

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            T+ET + +A L MPG IK+LNVSNAAA++LY+  +   
Sbjct: 266 LTRETCSVVARLDMPGEIKSLNVSNAAALSLYVGASRLG 304


>gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
 gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
          Length = 245

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L+G+H V+ AL   +++I ++L  K       +   D  L     ++ V  + ++++V K
Sbjct: 6   LFGIHAVNTALKRDAQRIHKILIMKGRQDAKMQRLIDTALDLRIRIEQVSKRELEELV-K 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AVHQG+     P        L   LD +     L++LD V DPHN+GA LR+A A    
Sbjct: 65  GAVHQGVVALCKPIQTYNEQYLDKLLDQLEEPPFLLILDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S   +A  AK A GA E +PY+ ++NL   L+ +   G  T G + ++   +
Sbjct: 125 AVVAPKDKSAPLNATAAKVACGAAESVPYVLVTNLARTLKSLQERGVWTTGTAGETDLDI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +ALI+GAEG+G+R  T+E    +  + M G + +LNVS A  + L+      
Sbjct: 185 YQANLKGPMALIMGAEGQGMRRLTREHCDQLVKIPMAGEVSSLNVSVATGICLFEAVRQR 244


>gi|23014094|ref|ZP_00053931.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 267

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 109/267 (40%), Positives = 161/267 (60%), Gaps = 21/267 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPE----------NLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           RD ++    + K R  + P           +++LYG+H VSAAL NP R+I +L+AT  A
Sbjct: 4   RDDRRAPLPHGKGRPQNAPRASGGGGGGGSSIWLYGIHAVSAALANPERRIRRLVATTEA 63

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RN 131
              L          PV+T+    ID+++   +VHQG+AL   PL + T++ +       +
Sbjct: 64  AKSLP-----ATKIPVETMERAEIDRLLAPGSVHQGIALLVEPLPAITMEDIIRMADSAS 118

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L++VLD V DPHN+GAILRSA AF    ++   R++P E+  LAKSASGALE +P +R
Sbjct: 119 SALVLVLDQVTDPHNVGAILRSAAAFGALAVVAPDRHAPDETGTLAKSASGALERMPLVR 178

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++N+  AL+ M   GF T GL++D+ K L +   + K+ L+LGAEG+G+R  T+E    +
Sbjct: 179 VTNVVRALEDMKKGGFWTAGLAADAPKTLAEAELSGKVVLVLGAEGEGMRRLTREHCDHL 238

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278
             L M G +++LNVSNAAAVALY  + 
Sbjct: 239 VRLPMCGEMESLNVSNAAAVALYEIRR 265


>gi|319404391|emb|CBI77994.1| tRNA/rRNA metyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 272

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 136/271 (50%), Positives = 181/271 (66%), Gaps = 5/271 (1%)

Query: 16  KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           KDSHYA+LRR +RD K    +  ++ ++     Q E ++LYG+H V AAL NP R +  L
Sbjct: 3   KDSHYARLRRRYRDTKGSFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRILRHL 62

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
             T NAL RLD + +     P+    P+ ++  VG+EAVHQG+ LET PL S +L  + N
Sbjct: 63  YTTPNALKRLDINESNI-ACPITPCSPKKLEMFVGREAVHQGIVLETEPLKSRSLSELTN 121

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++++D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I YI 
Sbjct: 122 TDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYIT 181

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + NL  ALQ++H   F + GL S+ K PLE  +   KI+LILGAEGKGLR KT+E   S+
Sbjct: 182 VRNLFKALQELHQMNFISFGLDSEGKFPLETALTGTKISLILGAEGKGLRQKTRENVYSL 241

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A L +PG IK+LNVSNAAA+ALY    +  +
Sbjct: 242 ARLDLPGDIKSLNVSNAAAIALYAVHKYLRQ 272


>gi|259047742|ref|ZP_05738143.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
           adiacens ATCC 49175]
 gi|259035933|gb|EEW37188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Granulicatella
           adiacens ATCC 49175]
          Length = 287

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/288 (28%), Positives = 143/288 (49%), Gaps = 12/288 (4%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQK-SRHTSQPENLFLYGVHTVSAALN 62
           +++ +       ++ + +   R+ R  K+ +   +   R  +Q    F++G H V  AL 
Sbjct: 1   MARNEYAPKKKSRNGNRSDRGRSERAEKRPRPTREHVERVEAQDVVDFVFGRHAVVEALQ 60

Query: 63  NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            P R  ++F    T    A    D        V+TVP   I+ +VG  AVHQGL    A 
Sbjct: 61  TPDRVNRVFIQEGTSGRDAAKVIDLAREKGIQVQTVPKTKIEDLVG-NAVHQGLVASIAA 119

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                L+ V            +++LD V DPHN+G+ILR+A A    GII  KR S S +
Sbjct: 120 YEYADLEDVFKKAEEKGEDPFIVILDGVEDPHNLGSILRTADATGVHGIIIPKRRSASLT 179

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           A +AK+++GA+EH+P +R++NLT  ++++ + G    G   +      +      +A+++
Sbjct: 180 ATVAKASTGAIEHVPVVRVTNLTQTIEQLKARGVWVFGTDMNG-TDYRKWNTKGPLAIVM 238

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G EGKG+    +E+   M  + M G +++LN S A+A+ +Y    + +
Sbjct: 239 GNEGKGVSRIVKESVDEMVTIPMVGHVQSLNASVASALMMYEVFRNRS 286


>gi|83312248|ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82947089|dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 267

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/270 (38%), Positives = 154/270 (57%), Gaps = 11/270 (4%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +K +        H   K  Q             +++LYG+H V AAL NP R+  +L+AT
Sbjct: 1   MKKTEERNRPHGHGKGKPPQHPRGSGGGGGGGSSIWLYGIHAVCAALANPDRRARRLVAT 60

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----- 129
             A   L          PV+T+    ID+++   +VHQG+AL   PL + T++ V     
Sbjct: 61  VEAAKSLP-----ATKVPVETMERSEIDRLLAPGSVHQGVALLVEPLPATTIEDVIRMAD 115

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              S L++VLD V DPHN+GAILRSA AF    ++   R++P E+  LAKSASGALE +P
Sbjct: 116 GAPSALVLVLDQVTDPHNVGAILRSAAAFGALAVVAPDRHTPDETGTLAKSASGALERMP 175

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +R++N+   L+ +   GF T GL++D+ K L +   + K+ L+LGAEG+G+R  T+E  
Sbjct: 176 LVRVTNVVRTLEDLKKAGFWTAGLAADAPKTLAEANLSGKVVLVLGAEGEGMRRLTREHC 235

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  L M G +++LNVSNAAAVALY  + 
Sbjct: 236 DHLVRLPMCGEMESLNVSNAAAVALYEMRR 265


>gi|291619082|ref|YP_003521824.1| RlmB [Pantoea ananatis LMG 20103]
 gi|291154112|gb|ADD78696.1| RlmB [Pantoea ananatis LMG 20103]
          Length = 259

 Score =  271 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       ++    + +D  
Sbjct: 17  SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVTALEAQGIVIQLADRKWLDSQ 76

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P         P L        L+VLD V DPHN+GA LRSA A  
Sbjct: 77  V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG 135

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K ASGA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 136 AHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 195

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 196 TVYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 255

Query: 279 HFA 281
              
Sbjct: 256 QRN 258


>gi|227357121|ref|ZP_03841490.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           ATCC 29906]
 gi|227162653|gb|EEI47620.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis
           ATCC 29906]
          Length = 247

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
              +YG+H V A L        ++   K    R       A       V+    Q +D  
Sbjct: 3   EDIIYGIHAVKALLERDPTHFKEVYVLKGREDRRLMPVIHALEEQGILVQVANRQWLDNQ 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA A  
Sbjct: 63  T-EGAVHQGIIAKVKPSRQYQEQDLPDLLAEVGTPFLLVLDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   L+ +       +G + ++  
Sbjct: 122 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEENIWIVGTAGEADH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 182 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAMR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|290473408|ref|YP_003466274.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289172707|emb|CBJ79478.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 245

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 14/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTID 102
           +  +YG+H V A L+   ++  ++   K    R     L    ++     V+    Q +D
Sbjct: 2   SEIIYGIHAVKALLDREPQRFMEVYVLKGREDRRLTPLLRELEDI--GITVQLANRQWLD 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVA 156
               + AVHQG+  +  P        + +         L+VLD V DPHN+GA LR+A A
Sbjct: 60  TQT-ESAVHQGIIAKVKPGRQYQESDLPDFLSQLDRPFLLVLDGVTDPHNLGACLRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++
Sbjct: 119 AGVDAVIIPRDRSAQLNATTKKVACGAAENVPLIRVTNLARTLRLLQESNIWIVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+  
Sbjct: 179 THSLYQSKLTGPVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEI 238

Query: 277 QNHFA 281
               +
Sbjct: 239 MRQRS 243


>gi|77456761|ref|YP_346266.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens Pf0-1]
 gi|77380764|gb|ABA72277.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 255

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+   ++    R+     L +   V+      + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKQIWLAESRNDPRVQTLIELANENRVQIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    + LL+VLD V DPHN+GA LRSA A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + +++  +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       LI+GAEGKG+R  T+E    + HL M G + +LNVS A  V L+  Q   
Sbjct: 185 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 244

Query: 281 A 281
            
Sbjct: 245 G 245


>gi|121602409|ref|YP_988872.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614586|gb|ABM45187.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 276

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 133/272 (48%), Positives = 185/272 (68%), Gaps = 5/272 (1%)

Query: 13  FSLKDSHYAKLRRNHRDYKK-MQSFNQKSRHTSQP---ENLFLYGVHTVSAALNNPSRKI 68
            + ++S++A LRR +RD K  + S + + ++   P   E + LYG+H V+AAL NP+R +
Sbjct: 4   KARRNSYFASLRRQYRDTKGFISSPSARFKYGPSPLTAEKIRLYGIHAVNAALQNPNRVL 63

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
             L AT NAL RL+   + P P  ++   P+ +D ++G +AVHQG+ LET PL S  L  
Sbjct: 64  ECLYATPNALKRLNIVESNP-PCLLELCSPKKLDTLIGSDAVHQGVVLETKPLKSRHLSE 122

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + ++ L++V+D + DPHN+GAI+RSAVAF    +ITT R+SP ES VLAK+ASGALE I 
Sbjct: 123 LTHTDLVVVMDQITDPHNVGAIMRSAVAFKAGALITTHRHSPQESGVLAKAASGALEMID 182

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           YI + NL +AL+++H   F + GL S+  KPLE  +   KIALILGAEGKGLR KT+ET 
Sbjct: 183 YITVRNLAEALKELHKADFISFGLDSEGGKPLEIALTGQKIALILGAEGKGLRKKTRETV 242

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++A L MPG IK+LNVSNAA +ALY T  + 
Sbjct: 243 CALARLDMPGNIKSLNVSNAATIALYATHKYL 274


>gi|319407391|emb|CBI81042.1| tRNA/rRNA metyltransferase [Bartonella sp. 1-1C]
          Length = 272

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 138/272 (50%), Positives = 183/272 (67%), Gaps = 5/272 (1%)

Query: 15  LKDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           LKDSHYA+LRR +R+ K    +  ++ ++     Q E ++LYG+H V AAL NP R +  
Sbjct: 2   LKDSHYARLRRRYRNTKGSFFQSTTYVKQPPIPLQKEQIYLYGIHPVHAALKNPRRVLRH 61

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           L AT NAL RL  + +     PV +  P+ ++  VG+EAVHQG+ LET PL S  L  + 
Sbjct: 62  LYATPNALKRLGINESNI-ACPVTSCLPKKLEMFVGREAVHQGIVLETEPLKSRPLSELT 120

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N+ L++++D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I YI
Sbjct: 121 NTDLIIIMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYI 180

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + NL   LQ++H   F + GL S+ K PLE  +K  KI+LILGAEGKGLR KT+E A S
Sbjct: 181 TVRNLFKTLQELHQMNFISFGLDSEGKFPLETALKGTKISLILGAEGKGLRQKTRENAYS 240

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +A L +PG IK+LNVSNAAA+ALY    +  +
Sbjct: 241 LARLDLPGDIKSLNVSNAAAIALYAVHKYLRQ 272


>gi|226326635|ref|ZP_03802153.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
 gi|225204856|gb|EEG87210.1| hypothetical protein PROPEN_00485 [Proteus penneri ATCC 35198]
          Length = 247

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 108/242 (44%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
              +YG+H V A L     +  ++   K    R               V+    Q +D  
Sbjct: 3   EEIIYGIHAVKALLERDPARFKEVYVLKGREDRRLTPVIHELEAQGILVQVANRQWLDSQ 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA A  
Sbjct: 63  T-EGAVHQGIIAKVKPGRQYQEQDLPDLLAKVGTPFLLVLDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P I+++NL   L+ +       +G + ++  
Sbjct: 122 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIKVTNLARTLRFLQEENVWIVGTAGEADH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 182 TLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAMR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|251788405|ref|YP_003003126.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya zeae Ech1591]
 gi|247537026|gb|ACT05647.1| RNA methyltransferase, TrmH family, group 3 [Dickeya zeae Ech1591]
          Length = 244

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLEVFILKGREDRRLQPLIAELEAGGIAVQVANRQWLDDK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V + AVHQG+               P L A   +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGAVHQGIVARVKEGRQYQENDLPGLLAALATPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|259907185|ref|YP_002647541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|224962807|emb|CAX54265.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|283476994|emb|CAY72886.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
 gi|310765324|gb|ADP10274.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia sp. Ejp617]
          Length = 245

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L++  ++  ++   K    R       A       ++    Q +D  
Sbjct: 2   SEIVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN- 60

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  ++  L++LD V DPHN+GA +RSA A  
Sbjct: 61  TSEGAVHQGIIARVKPGRQYQEGDLPDLLASLDNPFLLILDGVTDPHNLGACMRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S + +A   K ASGA EHIP +R++NL   ++ +       +G + ++  
Sbjct: 121 VHAIIVPKDRSAALNATAKKVASGAAEHIPLVRVTNLARTMRVLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|317493577|ref|ZP_07951998.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918520|gb|EFV39858.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 244

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 11/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R  +   A L      ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERDPQRFLEVFVMKGREDRRLMPLIAELEQMGIVIQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V + AVHQG+              L   L+ +     L++LD V DPHN+GA LRSA A 
Sbjct: 62  V-EGAVHQGIIARVREGRQYQENDLPALLENLDKPPFLLILDGVTDPHNLGACLRSADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +A   K A GA E +P IR++NL   ++ +       +G + ++ 
Sbjct: 121 GVHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTMRFLQEQNIWIVGTAGEAD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+   
Sbjct: 181 HNLYQSKMTGPMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAV 240

Query: 278 NHFA 281
               
Sbjct: 241 RQRG 244


>gi|271501896|ref|YP_003334922.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345451|gb|ACZ78216.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
           Ech586]
          Length = 244

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEASGIAVQVASRQWLDDK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V + AVHQG+               P L A   +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGAVHQGIIARVKEGRQYQENDLPGLLASHATPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 290

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 128/285 (44%), Gaps = 17/285 (5%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-----KSRHTSQPENLFLYGVHTVSAAL 61
           +++ K  + ++S+  K R N+R  KK  + N+        ++ +     + G + V  AL
Sbjct: 2   RENTKAGNKRESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 61

Query: 62  NNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               R I  L  + + L                 +K V  + +D +    AVHQG+    
Sbjct: 62  KT-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 119

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P     +  +         +  +++LD V DPHN+G+I+R+A  F   GII  KR S S
Sbjct: 120 TPYEYSEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 179

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + ++ KS+ GA+EH+   R++NL   + ++   G    G    +++   Q       A+
Sbjct: 180 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           I+G EGKG+   T +    +  + M G I +LN S A  + +Y  
Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEV 284


>gi|188588931|ref|YP_001919654.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 290

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/285 (25%), Positives = 128/285 (44%), Gaps = 17/285 (5%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-----KSRHTSQPENLFLYGVHTVSAAL 61
           +++ K  + ++S+  K R N+R  KK  + N+        ++ +     + G + V  AL
Sbjct: 2   RENTKAGNKRESNREKNRENNRGNKKEINKNRVVENNSYDNSFEEREDIIIGRNAVLEAL 61

Query: 62  NNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               R I  L  + + L                 +K V  + +D +    AVHQG+    
Sbjct: 62  KT-ERTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARV 119

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P     +  +         +  +++LD V DPHN+G+I+R+A  F   GII  KR S S
Sbjct: 120 TPYEYSEVSDILELAKKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSAS 179

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + ++ KS+ GA+EH+   R++NL   + ++   G    G    +++   Q       A+
Sbjct: 180 VTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGPCAI 239

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           I+G EGKG+   T +    +  + M G I +LN S A  + +Y  
Sbjct: 240 IIGNEGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEV 284


>gi|261345208|ref|ZP_05972852.1| RNA methyltransferase, TrmH family, group 3 [Providencia
           rustigianii DSM 4541]
 gi|282566901|gb|EFB72436.1| RNA methyltransferase, TrmH family, group 3 [Providencia
           rustigianii DSM 4541]
          Length = 245

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L N  ++I ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLENSPQRIKEVYILKGREDRRLMPIVHEIEAQGIVVQVANRQWMDAQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L     S  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  T-EGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A + K A GA E+IP IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDKSAQLNATVKKVACGAAENIPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q   +  IAL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKLSGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|188535077|ref|YP_001908874.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
 gi|188030119|emb|CAO98005.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 245

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L++  ++  ++   K    R       A       ++    Q +D  
Sbjct: 2   SEIVFGIHAVQALLDSDPQRFQEVFILKGREDRRLQTLVKALEAQGIVIQVANKQMLDN- 60

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L    ++  L++LD V DPHN+GA +RSA A  
Sbjct: 61  TSEGAVHQGIIARVKPGRQYQEGDLPDLLNSLDNPFLLILDGVTDPHNLGACMRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S + +A   K ASGA EHIP IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAIIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRG 243


>gi|300721497|ref|YP_003710772.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627989|emb|CBJ88538.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 245

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L +  ++  ++   K    R     +         V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLESDPQRFMEVYVLKGREDRRLTPLFQELESIGITVQLANRQWLDAQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L +  +   L+VLD V DPHN+GA LR+A A  
Sbjct: 62  T-EGAVHQGIIARVKPGRQYQENDLPDLLSQLDRPFLLVLDGVTDPHNLGACLRTADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++  
Sbjct: 121 VDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEHNIWIVGTAGEATH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 ALYESKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEIVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|70734080|ref|YP_257720.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68348379|gb|AAY95985.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           fluorescens Pf-5]
          Length = 254

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+   +       ++  D    +   V     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKQIWLAEGRSDPRVQVLVDLAAQNRVSVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   LD    + LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + ++++ L
Sbjct: 125 AVLVPKDKSATLTPTVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YDQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAMRQR 244

Query: 281 A 281
            
Sbjct: 245 G 245


>gi|330003381|ref|ZP_08304596.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
           92-3]
 gi|328536991|gb|EGF63283.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. MS
           92-3]
          Length = 255

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 14  SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 73

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 74  -SEGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 132

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 133 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 192

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 193 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 252

Query: 279 HFA 281
             +
Sbjct: 253 QRS 255


>gi|307132421|ref|YP_003884437.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
 gi|306529950|gb|ADM99880.1| 23S rRNA (Gm2251)-methyltransferase [Dickeya dadantii 3937]
          Length = 244

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 111/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R           +   V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLEVFTLKGREDRRLQPLIAELEANGIAVQVANRQWLDDK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V + AVHQG+               P L A  ++  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGAVHQGIVARVKEGRQYQENDLPGLLASLDTPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAETVPLIRVTNLARTLRFLQEQNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|183600321|ref|ZP_02961814.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
 gi|188020111|gb|EDU58151.1| hypothetical protein PROSTU_03883 [Providencia stuartii ATCC 25827]
          Length = 249

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 10/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+  + +  ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDRDASRFKEVYILKGREDRRLMPIIHEIESLGIVVQVANRQWMDAQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+  +  P         P      ++  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  T-EGAVHQGIIAKVLPGKQYQEGDLPDFLESTDTPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P  R++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAESVPLFRVTNLARTLRLLKEYNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVR 240

Query: 279 HFAK 282
             A+
Sbjct: 241 QRAE 244


>gi|242238241|ref|YP_002986422.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Dickeya dadantii
           Ech703]
 gi|242130298|gb|ACS84600.1| RNA methyltransferase, TrmH family, group 3 [Dickeya dadantii
           Ech703]
          Length = 244

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANL-PHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R  L   A L      VK    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFTLKGREDRRLLPLIAELEATGIAVKVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+               P L   R++  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  A-EGAVHQGIIARVREGRQYQENDLPGLLETRDTPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E +P IR++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRFLQERNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|257879805|ref|ZP_05659458.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257882531|ref|ZP_05662184.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257891646|ref|ZP_05671299.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257894123|ref|ZP_05673776.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|257814033|gb|EEV42791.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257818189|gb|EEV45517.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257828006|gb|EEV54632.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257830502|gb|EEV57109.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
          Length = 289

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/289 (26%), Positives = 134/289 (46%), Gaps = 15/289 (5%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAA 60
           + K   E+    +     + ++ +R   KK    NQ     ++   E+ F++G H    A
Sbjct: 1   MKKMGKERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEA 60

Query: 61  LNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L      K+F    ++        +       PVK VP Q ++ +     VHQG+ L   
Sbjct: 61  LQQGRGNKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAIT 119

Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           P    +LD +       +     ++LD + DPHN G+ILR+A A   DG+I  K  +   
Sbjct: 120 PYEYLSLDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGI 179

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           + ++ K+++GA+EH+P  R++NL  A+Q++   GF   G         ++      IAL+
Sbjct: 180 TPIVTKTSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALV 238

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
           +G EGKG+ P  ++    +  + M G +++LN S AA + +Y    Q  
Sbjct: 239 IGNEGKGMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 287


>gi|37528393|ref|NP_931738.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|52783299|sp|Q7MYU6|RLMB_PHOLL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|36787831|emb|CAE16946.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 244

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R       A       ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERDPQRFIEVYVLKGREDRRLTPLIHALESIGMTIQLANRQWLDNQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  T-EGAVHQGIIAKVKPGRQYQENDLPDLLAQVETPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E +P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAVIIPRDRSAQLNATAKKVACGAAESVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKLTGPMALVMGAEGEGMRRLTREHCDELISIPMVGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|304396947|ref|ZP_07378827.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
 gi|304355743|gb|EFM20110.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. aB]
          Length = 244

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       ++    + +D  
Sbjct: 2   SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALEAQGIVIQLAERKWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P         P L    +   L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLDKPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A   K ASGA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TVFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRN 243


>gi|220934084|ref|YP_002512983.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995394|gb|ACL71996.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 248

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 12/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           E  FL+G+H V AAL      +  L      K+A  R   DA       V+ V  Q +++
Sbjct: 3   EPQFLFGLHAVLAALTRKPTPVTTLWVDAGRKDARMREILDAARKAGVTVERVDAQALER 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAV 155
           +    A HQG+  E      P +             S LL+VLD V DPHN+GA LR+A 
Sbjct: 63  LC-PGARHQGVVAERIQEAGPEITEADLPNLVGRVASPLLLVLDGVTDPHNLGACLRTAD 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D +I  +  +   + V  K ASGA E +P+++++NL   L ++   G   IG S D
Sbjct: 122 AAGVDAVIVPRDRAAGLTPVARKVASGAAEVVPFVQVTNLARTLDQLKQAGVWIIGTSGD 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + L Q      IA+++GAEG+G+R  T+E    + ++ M G + +LNVS A  V L+ 
Sbjct: 182 APQTLYQADLKGPIAIVMGAEGQGMRRLTRERCDLLVNIPMQGSVSSLNVSVATGVCLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 VVRQR 246


>gi|146305679|ref|YP_001186144.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145573880|gb|ABP83412.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudomonas mendocina ymp]
          Length = 250

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 120/240 (50%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL   ++  A   +   +    H  PV     Q +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQHRVPVGHKERQELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++++ L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEAEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQR 244


>gi|126665195|ref|ZP_01736178.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
           ELB17]
 gi|126630565|gb|EBA01180.1| RNA methyltransferase, TrmH family, group 3 [Marinobacter sp.
           ELB17]
          Length = 266

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 12/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPV--KTVPPQTIDKIVG 106
           F++G H V A L     ++ Q+   T     R+     L     V  + V  + +D  V 
Sbjct: 24  FVFGWHAVEAVLKREPERLLQVWIQTGRQDKRVKSTTELLDTLGVSWEIVHRKLLDSRVA 83

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              VHQG+    +     + D +            L++LD V DPHN+GA +R+A A   
Sbjct: 84  --GVHQGIVASVSESREWSEDDLLAMLANSEKPPFLLILDGVTDPHNLGACMRTADAVGV 141

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S + + V  K A GA E +P++R++NL   L+ +   G   +G + ++   
Sbjct: 142 QAVIVPKDKSATLTPVARKVACGAAETVPFVRVTNLARLLRTLQEQGVWLVGTAGEASIT 201

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++GAEGKG+R  T+E    + ++ M G +++LNVS A+ V LY     
Sbjct: 202 LHQADLTGPLALVMGAEGKGMRRLTREHCDQLINIPMVGDVESLNVSVASGVCLYEALRQ 261

Query: 280 FA 281
            +
Sbjct: 262 RS 263


>gi|206580783|ref|YP_002240863.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
           342]
 gi|290512258|ref|ZP_06551625.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
 gi|206569841|gb|ACI11617.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella pneumoniae
           342]
 gi|289775253|gb|EFD83254.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella sp. 1_1_55]
          Length = 243

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQVANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|288937520|ref|YP_003441579.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
           At-22]
 gi|288892229|gb|ADC60547.1| RNA methyltransferase, TrmH family, group 3 [Klebsiella variicola
           At-22]
          Length = 243

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQVANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGVIARVKPGRQYQENDLPDLLAQHDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|315640328|ref|ZP_07895445.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           italicus DSM 15952]
 gi|315483990|gb|EFU74469.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           italicus DSM 15952]
          Length = 278

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 131/270 (48%), Gaps = 10/270 (3%)

Query: 20  YAKLRRN---HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-RKIFQLLATK 75
           Y K  RN    +D +K      K     +    F++G H V  AL      K+F L   +
Sbjct: 5   YKKESRNVGNKKDTRKQTVRKDKEMTAEELAENFVFGHHAVVEALKKGRGNKLFLLEDAR 64

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RN 131
                   + +     PVK VP Q +++   ++ VHQG+ L   P    +LD +      
Sbjct: 65  GERIDEVKELSKEQSVPVKWVPKQKLEQ-YSQQGVHQGMVLAITPYEYLSLDELLAKSPE 123

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD++ DPHN G+ILR+A A   DGII  K  +   + V+ K+++GA+EH+P  R
Sbjct: 124 KPFFIILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHVPIAR 183

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++NL+ A+Q +   GF T G + +             IALI+G EG+G+    +++   +
Sbjct: 184 VTNLSQAVQTLKERGFWTFGTAMEG-TNYRSWNTQGAIALIIGNEGRGMSEGLKKSVDEL 242

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G +++LN S AA + +Y      +
Sbjct: 243 LTIPMVGHVQSLNASVAAGLLMYEAFMQRS 272


>gi|319899065|ref|YP_004159158.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
 gi|319403029|emb|CBI76584.1| tRNA/rRNA metyltransferase [Bartonella clarridgeiae 73]
          Length = 271

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 134/272 (49%), Positives = 179/272 (65%), Gaps = 2/272 (0%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           K  + KDSHYA+LRR +RD K    F   +    Q E ++LYG+H V AAL NP R +  
Sbjct: 2   KKNTPKDSHYARLRRQYRDTKGF-LFQSSTHPKLQKEKIYLYGIHPVRAALKNPRRILRH 60

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           L AT NAL RL+ + +     P+    P+ ++  VG EAVHQGL LET  L S +L  + 
Sbjct: 61  LYATPNALKRLNINES-SLSCPITLCLPKKLEAFVGNEAVHQGLVLETETLKSHSLSELT 119

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N+ L++V+D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I YI
Sbjct: 120 NTDLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYI 179

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + NL+ AL++++   F + GL S+ + PLE  +  +KI+L+LGAE KGLR KT+ET   
Sbjct: 180 TVQNLSQALKELNQMNFISFGLDSEGELPLEIALTGNKISLVLGAESKGLRQKTRETVYK 239

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +A L MPG IK+LNVSNAA +ALY    +  +
Sbjct: 240 LARLDMPGDIKSLNVSNAATIALYAAHKYLRQ 271


>gi|308188261|ref|YP_003932392.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
 gi|308058771|gb|ADO10943.1| hypothetical tRNA/rRNA methyltransferase [Pantoea vagans C9-1]
          Length = 244

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       ++    + +D  
Sbjct: 2   SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPVVAALETQGIVIQLAERKWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P         P L        L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGRQYQEGDLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A   K ASGA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAIIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TVFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRN 243


>gi|320539669|ref|ZP_08039333.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
           str. Tucson]
 gi|320030281|gb|EFW12296.1| putative 23S rRNA (Gm2251)-methyltransferase [Serratia symbiotica
           str. Tucson]
          Length = 255

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K     RL             V+    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFIPKGRGDRRLQPLITELETTGLAVQVASRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V + AVHQG+         P  + +       ++  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGAVHQGIIARVREGRKPQENDLPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G S ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGASENVPLIRVTNLVRTLRLLQEMNVWVVGTSGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEGKG+R  T+E    +  + M G++ +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGKGMRRLTREHCDELISIPMAGMVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|69245491|ref|ZP_00603455.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
 gi|258614231|ref|ZP_05712001.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|260559479|ref|ZP_05831660.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|293564126|ref|ZP_06678532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1162]
 gi|293570062|ref|ZP_06681142.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1071]
 gi|294618280|ref|ZP_06697862.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1679]
 gi|294623062|ref|ZP_06701949.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           U0317]
 gi|314940061|ref|ZP_07847244.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a04]
 gi|314942532|ref|ZP_07849371.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133C]
 gi|314949362|ref|ZP_07852703.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0082]
 gi|314952822|ref|ZP_07855794.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133A]
 gi|314993745|ref|ZP_07859090.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133B]
 gi|314994810|ref|ZP_07859942.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a01]
 gi|68195742|gb|EAN10179.1| RNA methyltransferase TrmH, group 3 [Enterococcus faecium DO]
 gi|260074578|gb|EEW62899.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|291587434|gb|EFF19318.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1071]
 gi|291595496|gb|EFF26807.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1679]
 gi|291597535|gb|EFF28699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           U0317]
 gi|291604044|gb|EFF33572.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1162]
 gi|313590994|gb|EFR69839.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a01]
 gi|313591845|gb|EFR70690.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133B]
 gi|313595056|gb|EFR73901.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133A]
 gi|313598753|gb|EFR77598.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133C]
 gi|313640661|gb|EFS05241.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0133a04]
 gi|313644193|gb|EFS08773.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           TX0082]
          Length = 286

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65
           E+    +     + ++ +R   KK    NQ     ++   E+ F++G H    AL     
Sbjct: 4   ERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
            K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    +
Sbjct: 64  NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           LD +       +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K
Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+EH+P  R++NL  A+Q++   GF   G         ++      IAL++G EGK
Sbjct: 183 TSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
           G+ P  ++    +  + M G +++LN S AA + +Y    Q  
Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284


>gi|315617593|gb|EFU98199.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 3431]
          Length = 243

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A   H   ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                VHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGGVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|15600129|ref|NP_253623.1| rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|218894031|ref|YP_002442900.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|254244173|ref|ZP_04937495.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
 gi|296391776|ref|ZP_06881251.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1]
 gi|313109938|ref|ZP_07795866.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
 gi|52783327|sp|Q9HUM8|RLMB_PSEAE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9951215|gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|126197551|gb|EAZ61614.1| hypothetical protein PA2G_05016 [Pseudomonas aeruginosa 2192]
 gi|218774259|emb|CAW30076.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|310882368|gb|EFQ40962.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
          Length = 248

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL   +     R+     L      PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+      
Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244


>gi|292489612|ref|YP_003532502.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292898167|ref|YP_003537536.1| 23S_rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
           ATCC 49946]
 gi|291198015|emb|CBJ45118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erwinia amylovora
           ATCC 49946]
 gi|291555049|emb|CBA23125.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312173789|emb|CBX82043.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 245

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L++  ++  ++   K    R       A       ++    Q +D  
Sbjct: 2   SEIVFGIHAVQALLDSCPQRFQEVFILKGRDDRRLQTLVKALEAQGIVIQVANKQMLDN- 60

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A   +  L++LD V DPHN+GA +RSA A  
Sbjct: 61  TSEGAVHQGIIARVKPGRQYQEGDLPDLLASLENPFLLILDGVTDPHNLGACMRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A   K ASGA EHIP IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAALNATAKKVASGAAEHIPLIRVTNLARTMRVLQEANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLHQSRMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
           palustris BisA53]
          Length = 276

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 116/243 (47%), Positives = 153/243 (62%), Gaps = 1/243 (0%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + R         LYG HTV AAL NP R+I  L  T+NA  RL  D N+P     + V P
Sbjct: 30  RDRGERPEGPAILYGWHTVVAALANPQRRIRSLFLTENAARRLS-DENIPTRVQPEIVRP 88

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             ID+ +G +AVHQGL  E  PL SP +D++    +++VLD + DPHN+GAILRSA AF+
Sbjct: 89  SAIDQRLGPDAVHQGLLAEVDPLPSPDIDSLPQEGIVLVLDQITDPHNVGAILRSAAAFA 148

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              I+ T R+SP  + VLAKSASGALE +P + + NL  AL +++  GF TIGL S+   
Sbjct: 149 VKAIVITARHSPEATGVLAKSASGALELVPLVSVGNLARALTELNDRGFLTIGLDSEGDD 208

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L        +AL+LGAEGKGLR  T++T  ++A L +PG IK+LNVSNAAA+ALYI  +
Sbjct: 209 DLASIELTQPLALVLGAEGKGLRQLTRQTCGALARLDLPGDIKSLNVSNAAALALYIGAS 268

Query: 279 HFA 281
              
Sbjct: 269 RLG 271


>gi|311281268|ref|YP_003943499.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
           SCF1]
 gi|308750463|gb|ADO50215.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter cloacae
           SCF1]
          Length = 243

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQVASRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  ++  L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLLAQFDNPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRG 243


>gi|107104035|ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2]
 gi|254238349|ref|ZP_04931672.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
 gi|126170280|gb|EAZ55791.1| hypothetical protein PACG_04484 [Pseudomonas aeruginosa C3719]
          Length = 248

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL   +     R+     L      PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERGEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+      
Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244


>gi|209921669|ref|YP_002295753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           SE11]
 gi|209914928|dbj|BAG80002.1| putative RNA methyltransferase [Escherichia coli SE11]
          Length = 243

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +   L   A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLLLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|49475390|ref|YP_033431.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238196|emb|CAF27406.1| tRNA /rRNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 274

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 132/279 (47%), Positives = 177/279 (63%), Gaps = 15/279 (5%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYK------KMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
            EKI   K  HY +L+R   D K      +M+  +   RH      ++LYG+H+V AAL 
Sbjct: 2   REKIS--KSFHYNRLQRRSHDKKGFLPAARMKQKSVPMRH----GTIYLYGLHSVHAALK 55

Query: 63  NPSRKIFQLLATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           NP R    L  T NAL RL+  +++LP   P+    P+ +D  VG +AVHQG+ LET PL
Sbjct: 56  NPKRVFEHLYITPNALKRLNIPESDLP--CPITLCLPKQLDSFVGNDAVHQGIVLETEPL 113

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
               L  + N+ L++V+D + DPHN+GAI+RSAVAF  + +ITT R+SP ES VLAK+AS
Sbjct: 114 KPCQLSELTNTDLVIVMDQITDPHNVGAIMRSAVAFKAEALITTYRHSPQESGVLAKAAS 173

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GALE I YI + NL + LQ++H  GF + GL S+   PLE  +  +KIAL+LGAEGKGLR
Sbjct: 174 GALEMIHYITVQNLAETLQELHKAGFISFGLDSEGNHPLETTLTGEKIALVLGAEGKGLR 233

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            KT+E   ++  L MPG IK+LNVSNAA +ALY    + 
Sbjct: 234 KKTRENVCALTRLDMPGNIKSLNVSNAATIALYAAHKYL 272


>gi|293553641|ref|ZP_06674265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1039]
 gi|291602216|gb|EFF32444.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1039]
          Length = 286

 Score =  268 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65
           E+    +     + ++ +R   KK    NQ     ++   E+ F++G H    AL     
Sbjct: 4   ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
            K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    +
Sbjct: 64  NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           LD +       +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K
Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+EH+P  R++NL  A+Q++   GF   G         ++      IAL++G EGK
Sbjct: 183 TSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
           G+ P  ++    +  + M G +++LN S AA + +Y    Q  
Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284


>gi|300715048|ref|YP_003739851.1| 23S rRNA (guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
           Eb661]
 gi|299060884|emb|CAX57991.1| 23S rRNA (Guanosine-2\'-O-)-methyltransferase [Erwinia billingiae
           Eb661]
          Length = 245

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANL--PHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L++  ++  ++   K     RL             V+    Q +D  
Sbjct: 2   SEIVFGIHAVKALLDSSPQRFQEVFILKGRDDKRLQPLVKELEAQGIVVQIANRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P         P L    +S  L++LD + DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGRQYQESDLPDLLESLDSPFLLILDGITDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K ASGA EH+P I ++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVASGAAEHVPLITVTNLARTMRVLQDANVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 NLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMSGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|270265007|ref|ZP_06193270.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
 gi|270040941|gb|EFA14042.1| hypothetical protein SOD_k00430 [Serratia odorifera 4Rx13]
          Length = 243

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V + AVHQG+            + +       ++  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGAVHQGIIARVREGRQYQENDLPGLLEGIDTPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|227325971|ref|ZP_03829995.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 243

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 12/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R           H   ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAHGIVIQVANRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             ++AVHQG+  +           L   LD +  +  L++LD V DPHN+GA LR+A   
Sbjct: 62  A-EDAVHQGIVAKVKEGRKYQENDLPAMLDNL-ETPFLLILDGVTDPHNLGACLRNADGA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + ++ 
Sbjct: 120 GVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+   
Sbjct: 180 HTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAV 239

Query: 278 NHFA 281
              A
Sbjct: 240 RQRA 243


>gi|157368686|ref|YP_001476675.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Serratia
           proteamaculans 568]
 gi|157320450|gb|ABV39547.1| RNA methyltransferase, TrmH family, group 3 [Serratia
           proteamaculans 568]
          Length = 243

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V + AVHQG+               P L    ++  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGAVHQGIIARVREGRQYQENDLPALLESVDTPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEMNVWVVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|152983804|ref|YP_001350984.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
 gi|150958962|gb|ABR80987.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
          Length = 248

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 118/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL   +     R+     L      PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+    + LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERAEGAPLLLALDGVTDPHNLGACLRTADAAGVL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+      
Sbjct: 185 YQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQR 244


>gi|167035924|ref|YP_001671155.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166862412|gb|ABZ00820.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           GB-1]
          Length = 248

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERRELDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVVIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|152973051|ref|YP_001338197.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892665|ref|YP_002917399.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150957900|gb|ABR79930.1| Gm2251 methyltransferase of 23S rRNA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238544981|dbj|BAH61332.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 243

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|116053085|ref|YP_793404.1| TrmH family RNA methyltransferase , group 3 [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588306|gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 248

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/240 (32%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL   +     R+     L      PV     + +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+ LD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++ K L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +A L M G + +LNVS A  V L+      
Sbjct: 185 YQLDLTGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFKILRQR 244


>gi|229824606|ref|ZP_04450675.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
 gi|229785977|gb|EEP22091.1| hypothetical protein GCWU000282_01953 [Catonella morbi ATCC 51271]
          Length = 281

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 138/286 (48%), Gaps = 20/286 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
              +S K  S + +H  K   +    KK+++    S     P+   ++G H V   L   
Sbjct: 4   DTSRSRKSTSKRQTHKKKY--DETTDKKIENIPDAS-----PQEEIIFGKHAVMETLKKN 56

Query: 65  SRKIFQLLATKN-ALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
              I +L   K  A +++     L   H    + VP   +D++  + A HQGL L   P 
Sbjct: 57  K-GINKLFYQKGLADSKISSIIELVKNHGGIFQEVPKSKLDELT-QGANHQGLVLTVPPF 114

Query: 122 LSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T++              L++LD + DPHN+G+ILR+A AF   GII  KR +   + 
Sbjct: 115 DYQTIEGCLALAESKGQPPFLLILDGIEDPHNLGSILRTADAFGVHGIIIPKRRAVGLTG 174

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           ++AK+++GA+EH+P +R++N+   ++ + + G         + + + Q      +A+++G
Sbjct: 175 IVAKTSTGAIEHVPVVRVANIAQTIELLQNQGIWVFATDM-AGEDVRQWNSQGPLAIVIG 233

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            EG+G+ P  ++ A  +  + M G +++LN S AA V +Y    H 
Sbjct: 234 NEGQGVSPLVKQKADGIVTIPMVGHVQSLNASVAAGVLVYEVARHR 279


>gi|13470525|ref|NP_102094.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
 gi|14021267|dbj|BAB47880.1| tRNA/rRNA metyltransferase [Mesorhizobium loti MAFF303099]
          Length = 235

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 131/229 (57%), Positives = 166/229 (72%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + LYG+HTV AAL+NP RKI ++L T+NA  RL+ +      F  + V P+ IDKI G +
Sbjct: 1   MRLYGLHTVRAALDNPRRKIRKMLVTRNAAERLEIEDLAALTFKAELVEPRDIDKITGSD 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           AVHQG+ +E  PL    LDA+ +++L++VLD + DPHN+GAILRSAVAF    +ITT R+
Sbjct: 61  AVHQGVLIEAEPLKPKRLDALGDTRLVLVLDQITDPHNVGAILRSAVAFGAGALITTARH 120

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           SP ES VLAKSASGALEHI  I + NL DAL ++H  GFQTIGL SD    LE     D+
Sbjct: 121 SPQESGVLAKSASGALEHIDQIEVKNLADALGQLHEAGFQTIGLDSDGPAELETSFAGDR 180

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           IAL+LGAEGKGLR KT+ET T++A L MPG I++LNVSNAAAV+LY  +
Sbjct: 181 IALVLGAEGKGLRQKTRETVTTLARLDMPGAIRSLNVSNAAAVSLYAAR 229


>gi|296100947|ref|YP_003611093.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055406|gb|ADF60144.1| 23S rRNA 2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 244

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 10/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  ++   ++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLIAALDNPFFLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFAK 282
              +
Sbjct: 241 QRGE 244


>gi|226942911|ref|YP_002797984.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
 gi|226717838|gb|ACO77009.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii DJ]
          Length = 247

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 118/242 (48%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  R++ +L   +     R+     L       V     + +D+    
Sbjct: 7   IYGVHAVEALLRHHPRRVKRLWLAEGRQDPRVQALLELARQARIAVGQRERRELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   LD      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGEAMLDELLDRCEGPPLLLVLDGVTDPHNLGACLRTADAAGAQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E +P + ++NL   L+K+   G  T+G + + ++ L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVVPLVAVTNLARTLEKLRQRGLWTVGTAGEVEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                     LI+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YGVDLRGPTVLIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAVRQR 244

Query: 281 AK 282
           ++
Sbjct: 245 SR 246


>gi|170767082|ref|ZP_02901535.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
           TW07627]
 gi|170124520|gb|EDS93451.1| RNA methyltransferase, TrmH family, group 3 [Escherichia albertii
           TW07627]
          Length = 243

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A   H   ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESHGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                VHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGGVHQGIIARVKPGRQYQENDLPDLIASLDQSFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATARKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
 gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
          Length = 251

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+   +     R+     L   +   +     + +D  V  
Sbjct: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMD--VWV 63

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    + LL+VLD V DPHN+GA LRSA A    
Sbjct: 64  EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + +++  +
Sbjct: 124 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWIVGTAGEAEVSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       LI+GAEGKG+R  T+E    + HL M G + +LNVS A  V L+  Q   
Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEAQRQR 243

Query: 281 A 281
            
Sbjct: 244 G 244


>gi|77361394|ref|YP_340969.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876305|emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 247

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           N  ++G H+V A L +   +  ++ A K    +      D  L     V+ +  + +D  
Sbjct: 3   NELIFGFHSVEAILASEPERFVEIYALKGRDDKRSTPIIDEALKFGISVQYMQRKALDSK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K   HQG+              LDA+    ++  L+VLD + DPHN+GA LRSA A  
Sbjct: 63  -SKGEQHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +    K A GA E +P I+++NL   L+++   G   +G + ++  
Sbjct: 122 VHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDN 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDLLVKIPMAGTVSSLNVSVATGICLFEVLR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|324112223|gb|EGC06201.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325499715|gb|EGC97574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
           fergusonii ECD227]
          Length = 243

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|146310028|ref|YP_001175102.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Enterobacter sp. 638]
 gi|145316904|gb|ABP59051.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 244

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 10/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLASRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  ++   ++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARAKPGRQYQENDLPDLIAQLDNPFFLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  +   +A   K A GA E++P IR++NL   ++++       +G + ++  
Sbjct: 121 VHAVIVPRDRAAQLNATAKKVACGAAENVPLIRVTNLARTMRQLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TVYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFAK 282
              K
Sbjct: 241 QRTK 244


>gi|227112377|ref|ZP_03826033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 243

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 12/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVANRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              +AVHQG+  +           L   LD +  +  L++LD V DPHN+GA LR+A   
Sbjct: 62  AD-DAVHQGIVAKVKEGRKYQENDLPAMLDNL-ETPFLLILDGVTDPHNLGACLRNADGA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + ++ 
Sbjct: 120 GVHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+   
Sbjct: 180 HTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAV 239

Query: 278 NHFA 281
              A
Sbjct: 240 RQRA 243


>gi|309704685|emb|CBJ04035.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ETEC
           H10407]
          Length = 243

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEIIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|146283972|ref|YP_001174125.1| RNA methyltransferase [Pseudomonas stutzeri A1501]
 gi|145572177|gb|ABP81283.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas stutzeri
           A1501]
 gi|327482300|gb|AEA85610.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 251

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107
           +YG+H V A L +  +++ Q+   +     R+     L     V       + +D  V  
Sbjct: 7   IYGLHAVEALLRHHPKRVKQVWLAEGRGDPRVQVLIELAAQARVSVGQCERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRAEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + ++++ L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQKGLWVVGTAGEAEQSL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +     I L++GAEG+G+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YAQDLTGPIVLVMGAEGRGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 AK 282
            +
Sbjct: 245 GR 246


>gi|82546579|ref|YP_410526.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii
           Sb227]
 gi|81247990|gb|ABB68698.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 243

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|262045387|ref|ZP_06018411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037305|gb|EEW38552.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 243

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVYILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  VHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGVVHQGIIARVKPGRQYQENDLPDLLAQLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|253689806|ref|YP_003018996.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756384|gb|ACT14460.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 243

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVANRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              +AVHQG+  +            P L     +  L++LD V DPHN+GA LR+A    
Sbjct: 62  AD-DAVHQGIVAKVKEGRKYQENDLPALLDNLETPFLLILDGVTDPHNLGACLRNADGAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|295098333|emb|CBK87423.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 243

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A   +   ++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLIAGLENPFFLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRG 243


>gi|313500862|gb|ADR62228.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Pseudomonas
           putida BIRD-1]
          Length = 248

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++ + +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|325271218|ref|ZP_08137763.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324103621|gb|EGC00923.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 248

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 119/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++       +        +   V     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLQALLALAAENRVAVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEEMLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQR 244


>gi|15804769|ref|NP_290810.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 EDL933]
 gi|15834410|ref|NP_313183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|16132002|ref|NP_418601.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|24115535|ref|NP_710045.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
           str. 301]
 gi|26251072|ref|NP_757112.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           CFT073]
 gi|30065552|ref|NP_839723.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|74314665|ref|YP_313084.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sonnei
           Ss046]
 gi|89110900|ref|AP_004680.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|91213729|ref|YP_543715.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UTI89]
 gi|110644537|ref|YP_672267.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
 gi|110808098|ref|YP_691618.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella flexneri 5
           str. 8401]
 gi|117626526|ref|YP_859849.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli APEC
           O1]
 gi|157158474|ref|YP_001465680.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           E24377A]
 gi|157163645|ref|YP_001460963.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli HS]
 gi|168751468|ref|ZP_02776490.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754751|ref|ZP_02779758.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760422|ref|ZP_02785429.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766459|ref|ZP_02791466.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774107|ref|ZP_02799114.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780612|ref|ZP_02805619.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168784817|ref|ZP_02809824.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC869]
 gi|168801835|ref|ZP_02826842.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC508]
 gi|170021810|ref|YP_001726764.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ATCC
           8739]
 gi|170083626|ref|YP_001732946.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170679577|ref|YP_001746575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           SMS-3-5]
 gi|188494408|ref|ZP_03001678.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           53638]
 gi|191165658|ref|ZP_03027498.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
 gi|191170707|ref|ZP_03032259.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|191174517|ref|ZP_03036015.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|193066002|ref|ZP_03047060.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
 gi|193070849|ref|ZP_03051781.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E110019]
 gi|194426679|ref|ZP_03059233.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
 gi|194434585|ref|ZP_03066842.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
           1012]
 gi|194439536|ref|ZP_03071610.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           101-1]
 gi|195935970|ref|ZP_03081352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806918|ref|ZP_03249255.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813496|ref|ZP_03254825.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818601|ref|ZP_03258921.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399233|ref|YP_002273722.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4115]
 gi|215489524|ref|YP_002331955.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217326510|ref|ZP_03442594.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218551450|ref|YP_002385242.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia
           fergusonii ATCC 35469]
 gi|218556732|ref|YP_002389646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           IAI1]
 gi|218561339|ref|YP_002394252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
 gi|218692514|ref|YP_002400726.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           ED1a]
 gi|218697929|ref|YP_002405596.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           55989]
 gi|218702877|ref|YP_002410506.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           IAI39]
 gi|218707791|ref|YP_002415310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UMN026]
 gi|227886777|ref|ZP_04004582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           83972]
 gi|237703847|ref|ZP_04534328.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|238903287|ref|YP_002929083.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
 gi|253775195|ref|YP_003038026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037194|ref|ZP_04871271.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
 gi|254164109|ref|YP_003047217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli B
           str. REL606]
 gi|254796199|ref|YP_003081036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019825|ref|ZP_05433690.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella sp. D9]
 gi|256025115|ref|ZP_05438980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia sp.
           4_1_40B]
 gi|260847010|ref|YP_003224788.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260858333|ref|YP_003232224.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|261225300|ref|ZP_05939581.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255448|ref|ZP_05947981.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285592|ref|YP_003502410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293402807|ref|ZP_06646904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1412]
 gi|293407907|ref|ZP_06651747.1| RNA methyltransferase [Escherichia coli B354]
 gi|293476491|ref|ZP_06664899.1| RNA methyltransferase [Escherichia coli B088]
 gi|298378337|ref|ZP_06988221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|300816519|ref|ZP_07096740.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           107-1]
 gi|300821273|ref|ZP_07101421.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           119-7]
 gi|300899718|ref|ZP_07117944.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           198-1]
 gi|300906010|ref|ZP_07123734.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           84-1]
 gi|300920795|ref|ZP_07137196.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           115-1]
 gi|300922413|ref|ZP_07138533.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           182-1]
 gi|300929288|ref|ZP_07144764.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           187-1]
 gi|300940667|ref|ZP_07155228.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           21-1]
 gi|300949140|ref|ZP_07163182.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           116-1]
 gi|300955237|ref|ZP_07167630.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           175-1]
 gi|300987255|ref|ZP_07178084.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           45-1]
 gi|300988642|ref|ZP_07178782.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           200-1]
 gi|301023421|ref|ZP_07187204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           69-1]
 gi|301028002|ref|ZP_07191286.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           196-1]
 gi|301045987|ref|ZP_07193170.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           185-1]
 gi|301302597|ref|ZP_07208727.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           124-1]
 gi|301325944|ref|ZP_07219365.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           78-1]
 gi|301646627|ref|ZP_07246493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           146-1]
 gi|306815605|ref|ZP_07449754.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           NC101]
 gi|307140874|ref|ZP_07500230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           H736]
 gi|307314872|ref|ZP_07594464.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
 gi|309796991|ref|ZP_07691391.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           145-7]
 gi|312965854|ref|ZP_07780080.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|312974012|ref|ZP_07788183.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|331644927|ref|ZP_08346044.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
 gi|331656008|ref|ZP_08356996.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
 gi|331660755|ref|ZP_08361687.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA206]
 gi|331665844|ref|ZP_08366738.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA143]
 gi|331671085|ref|ZP_08371918.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA271]
 gi|331671329|ref|ZP_08372127.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA280]
 gi|331680310|ref|ZP_08380969.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
 gi|331681199|ref|ZP_08381836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
 gi|332280964|ref|ZP_08393377.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
 gi|52783780|sp|P63177|RLMB_ECOLI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783781|sp|P63179|RLMB_ECO57 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783782|sp|P63180|RLMB_SHIFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|54039247|sp|P63178|RLMB_ECOL6 RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|12519168|gb|AAG59376.1|AE005651_5 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26111504|gb|AAN83686.1|AE016771_197 Hypothetical tRNA/rRNA methyltransferase yjfH [Escherichia coli
           CFT073]
 gi|537021|gb|AAA97076.1| ORF_o243 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790623|gb|AAC77137.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|13364633|dbj|BAB38579.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24054863|gb|AAN45752.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043816|gb|AAP19535.1| hypothetical protein S4603 [Shigella flexneri 2a str. 2457T]
 gi|73858142|gb|AAZ90849.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|85676931|dbj|BAE78181.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|91075303|gb|ABE10184.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
           UTI89]
 gi|110346129|gb|ABG72366.1| hypothetical tRNA/rRNA methyltransferase YjfH [Escherichia coli
           536]
 gi|110617646|gb|ABF06313.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115515650|gb|ABJ03725.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157069325|gb|ABV08580.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli HS]
 gi|157080504|gb|ABV20212.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E24377A]
 gi|169756738|gb|ACA79437.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli ATCC
           8739]
 gi|169891461|gb|ACB05168.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|170517295|gb|ACB15473.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           SMS-3-5]
 gi|187770173|gb|EDU34017.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014500|gb|EDU52622.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4113]
 gi|188489607|gb|EDU64710.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           53638]
 gi|189001755|gb|EDU70741.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357886|gb|EDU76305.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364243|gb|EDU82662.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368907|gb|EDU87323.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374953|gb|EDU93369.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC869]
 gi|189376090|gb|EDU94506.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC508]
 gi|190904353|gb|EDV64062.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B7A]
 gi|190905197|gb|EDV64838.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|190908931|gb|EDV68518.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli F11]
 gi|192926325|gb|EDV80961.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli E22]
 gi|192955795|gb|EDV86266.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           E110019]
 gi|194415418|gb|EDX31686.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli B171]
 gi|194417170|gb|EDX33282.1| RNA methyltransferase, TrmH family, group 3 [Shigella dysenteriae
           1012]
 gi|194421535|gb|EDX37548.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           101-1]
 gi|208726719|gb|EDZ76320.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734773|gb|EDZ83460.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738724|gb|EDZ86406.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160633|gb|ACI38066.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209750198|gb|ACI73406.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750200|gb|ACI73407.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750202|gb|ACI73408.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750204|gb|ACI73409.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|209750206|gb|ACI73410.1| hypothetical protein ECs5156 [Escherichia coli]
 gi|215267596|emb|CAS12051.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322731|gb|EEC31155.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354661|emb|CAV01659.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli 55989]
 gi|218358992|emb|CAQ91652.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218363501|emb|CAR01155.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI1]
 gi|218368108|emb|CAR05915.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli S88]
 gi|218372863|emb|CAR20743.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli IAI39]
 gi|218430078|emb|CAR10923.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ED1a]
 gi|218434888|emb|CAR15826.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli UMN026]
 gi|222035950|emb|CAP78695.1| 23S rRNA [Escherichia coli LF82]
 gi|226840300|gb|EEH72302.1| 23S rRNA-methyltransferase [Escherichia sp. 1_1_43]
 gi|226901759|gb|EEH88018.1| RNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227836350|gb|EEJ46816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           83972]
 gi|238859752|gb|ACR61750.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BW2952]
 gi|242379702|emb|CAQ34526.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer, subunit of
           23S rRNA 2'-O-ribose G2251 methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|253326239|gb|ACT30841.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976010|gb|ACT41681.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253980166|gb|ACT45836.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli BL21(DE3)]
 gi|254595599|gb|ACT74960.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756982|dbj|BAI28484.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257762157|dbj|BAI33654.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260450993|gb|ACX41415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli DH1]
 gi|281181276|dbj|BAI57606.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|281603642|gb|ADA76626.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shigella
           flexneri 2002017]
 gi|284924362|emb|CBG37478.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 042]
 gi|290765465|gb|ADD59426.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291320944|gb|EFE60386.1| RNA methyltransferase [Escherichia coli B088]
 gi|291429722|gb|EFF02736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1412]
 gi|291472158|gb|EFF14640.1| RNA methyltransferase [Escherichia coli B354]
 gi|294489951|gb|ADE88707.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           IHE3034]
 gi|298280671|gb|EFI22172.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|299878912|gb|EFI87123.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           196-1]
 gi|300302030|gb|EFJ58415.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           185-1]
 gi|300305875|gb|EFJ60395.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           200-1]
 gi|300317814|gb|EFJ67598.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           175-1]
 gi|300356729|gb|EFJ72599.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           198-1]
 gi|300397008|gb|EFJ80546.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           69-1]
 gi|300402177|gb|EFJ85715.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           84-1]
 gi|300407732|gb|EFJ91270.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           45-1]
 gi|300412218|gb|EFJ95528.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           115-1]
 gi|300421232|gb|EFK04543.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           182-1]
 gi|300451388|gb|EFK15008.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           116-1]
 gi|300454555|gb|EFK18048.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           21-1]
 gi|300462781|gb|EFK26274.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           187-1]
 gi|300526162|gb|EFK47231.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           119-7]
 gi|300530749|gb|EFK51811.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           107-1]
 gi|300842122|gb|EFK69882.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           124-1]
 gi|300847297|gb|EFK75057.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           78-1]
 gi|301075174|gb|EFK89980.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           146-1]
 gi|305851267|gb|EFM51722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           NC101]
 gi|306905675|gb|EFN36204.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli W]
 gi|307556347|gb|ADN49122.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli ABU 83972]
 gi|307629252|gb|ADN73556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           UM146]
 gi|308119404|gb|EFO56666.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           145-7]
 gi|310331546|gb|EFP98802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|312289097|gb|EFR16991.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|312948829|gb|ADR29656.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313646345|gb|EFS10807.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315063494|gb|ADT77821.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli W]
 gi|315138734|dbj|BAJ45893.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Escherichia coli
           DH1]
 gi|315255525|gb|EFU35493.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           85-1]
 gi|315288461|gb|EFU47859.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           110-3]
 gi|315293538|gb|EFU52890.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           153-1]
 gi|315299061|gb|EFU58315.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           16-3]
 gi|320180693|gb|EFW55620.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella boydii ATCC
           9905]
 gi|320193560|gb|EFW68197.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           WV_060327]
 gi|320200690|gb|EFW75276.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           EC4100B]
 gi|320644307|gb|EFX13372.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H- str. 493-89]
 gi|320649625|gb|EFX18149.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H- str. H 2687]
 gi|320655021|gb|EFX22982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660528|gb|EFX27989.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665797|gb|EFX32834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323156003|gb|EFZ42165.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli EPECa14]
 gi|323161969|gb|EFZ47841.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli E128010]
 gi|323166663|gb|EFZ52421.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella sonnei 53G]
 gi|323189941|gb|EFZ75219.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli RN587/1]
 gi|323380427|gb|ADX52695.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli KO11]
 gi|323935410|gb|EGB31754.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323940099|gb|EGB36293.1| RNA methyltransferase [Escherichia coli E482]
 gi|323946028|gb|EGB42065.1| RNA methyltransferase [Escherichia coli H120]
 gi|323950751|gb|EGB46629.1| RNA methyltransferase [Escherichia coli H252]
 gi|323955467|gb|EGB51231.1| RNA methyltransferase [Escherichia coli H263]
 gi|323960329|gb|EGB55969.1| RNA methyltransferase [Escherichia coli H489]
 gi|323965566|gb|EGB61020.1| RNA methyltransferase [Escherichia coli M863]
 gi|323970565|gb|EGB65824.1| RNA methyltransferase [Escherichia coli TA007]
 gi|324005243|gb|EGB74462.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           57-2]
 gi|324013823|gb|EGB83042.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           60-1]
 gi|324019358|gb|EGB88577.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli MS
           117-3]
 gi|324118745|gb|EGC12637.1| RNA methyltransferase [Escherichia coli E1167]
 gi|326346655|gb|EGD70389.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           O157:H7 str. 1044]
 gi|327250120|gb|EGE61839.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli STEC_7v]
 gi|331035902|gb|EGI08140.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H736]
 gi|331046362|gb|EGI18452.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M718]
 gi|331051797|gb|EGI23836.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA206]
 gi|331056895|gb|EGI28889.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA143]
 gi|331061674|gb|EGI33600.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA271]
 gi|331071174|gb|EGI42531.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli
           TA280]
 gi|331071773|gb|EGI43109.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H591]
 gi|331081420|gb|EGI52581.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli H299]
 gi|332083177|gb|EGI88408.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 5216-82]
 gi|332103316|gb|EGJ06662.1| 23S rRNA ()-methyltransferase [Shigella sp. D9]
 gi|332346257|gb|AEE59591.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332749056|gb|EGJ79479.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-671]
 gi|332749325|gb|EGJ79746.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 4343-70]
 gi|332763228|gb|EGJ93471.1| 23S rRNA 2'-O-ribose methyltransferase [Shigella flexneri 2930-71]
 gi|333010329|gb|EGK29762.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri VA-6]
 gi|333011163|gb|EGK30577.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-272]
          Length = 243

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|227552719|ref|ZP_03982768.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
           TX1330]
 gi|257897355|ref|ZP_05677008.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|293378883|ref|ZP_06625038.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           PC4.1]
 gi|227178119|gb|EEI59091.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecium
           TX1330]
 gi|257833920|gb|EEV60341.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|292642424|gb|EFF60579.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           PC4.1]
          Length = 286

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65
           E+    +     + ++ +R   KK    NQ     ++   E+ F++G H    AL     
Sbjct: 4   ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
            K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    +
Sbjct: 64  NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           LD +       +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K
Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+E++P  R++NL  A+Q++   GF   G         ++      IAL++G EGK
Sbjct: 183 TSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
           G+ P  ++    +  + M G +++LN S AA + +Y    Q  
Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284


>gi|257886070|ref|ZP_05665723.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257821926|gb|EEV49056.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
          Length = 286

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65
           E+    +     + ++ +R   KK    NQ     ++   E+ F++G H    AL     
Sbjct: 4   ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHVAVEALQQGRG 63

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
            K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    +
Sbjct: 64  NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           LD +       +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K
Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+EH+P  R++NL  A+Q++   GF   G         ++      IAL++G EGK
Sbjct: 183 TSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
           G+ P  ++    +  + M G +++LN S AA + +Y    Q  
Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284


>gi|323975479|gb|EGB70580.1| RNA methyltransferase [Escherichia coli TW10509]
          Length = 243

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A      L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|322831164|ref|YP_004211191.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
 gi|321166365|gb|ADW72064.1| RNA methyltransferase, TrmH family, group 3 [Rahnella sp. Y9602]
          Length = 271

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K    +      D        ++    Q +D+ 
Sbjct: 26  SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDKRLKPLIDELEASGIVIQVASRQWLDEK 85

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+               P L    +   L+VLD V DPHN+GA LR+A A  
Sbjct: 86  -SEGAVHQGIIARVREGRQYQENDLPALLESLDCPFLLVLDGVTDPHNLGACLRTADAAG 144

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K ASGA E++P I ++NL   L+ +       +G + ++  
Sbjct: 145 VHAVIVPRDRSAKLNATAKKVASGAAENVPLINVTNLARTLRVLQEHNVWIVGTAGEADH 204

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 205 DLFQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 264

Query: 279 HFA 281
              
Sbjct: 265 QRG 267


>gi|331650305|ref|ZP_08351377.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
 gi|330908522|gb|EGH37041.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Escherichia
           coli AA86]
 gi|331040699|gb|EGI12857.1| RNA methyltransferase, TrmH family, group 3 [Escherichia coli M605]
          Length = 243

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERTPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|293417683|ref|ZP_06660305.1| RNA methyltransferase [Escherichia coli B185]
 gi|291430401|gb|EFF03399.1| RNA methyltransferase [Escherichia coli B185]
          Length = 243

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPELIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|26991558|ref|NP_746983.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|52783313|sp|Q88DE7|RLMB_PSEPK RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|24986644|gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           KT2440]
          Length = 248

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|308389631|gb|ADO31951.1| RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 261

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V  V    +D I  K
Sbjct: 18  IYGFHAVNARLWQNPKSIVELYIQEGKNDARTREVLEKAANENIRVYFVDTTRLDAI-SK 76

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A           L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 77  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTANAMGVHAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 196

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 197 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254


>gi|325128109|gb|EGC51004.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           N1568]
          Length = 250

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V  V    +D I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A           L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I+ K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 ISPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|320547737|ref|ZP_08042021.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           equinus ATCC 9812]
 gi|320447497|gb|EFW88256.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           equinus ATCC 9812]
          Length = 276

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 122/241 (50%), Gaps = 9/241 (3%)

Query: 46  PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ +L  N   K++     +        D        +   P +T++ +
Sbjct: 35  EANDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKDLAAEKKVSISWTPKKTLNDM 94

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  +      LD +        + L+++LD +NDPHN G+ILR+A A +
Sbjct: 95  T-NGAVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSILRTADATN 153

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V++K+++GA+EH+P  R++NL+  L K+   GF   G   +   
Sbjct: 154 VTGVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNGTS 213

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +   + K+ALI+G EGKG+ P  ++    M  + M G +++LN S AAAV +Y    
Sbjct: 214 S-HKWNTSGKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFR 272

Query: 279 H 279
           H
Sbjct: 273 H 273


>gi|261822838|ref|YP_003260944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           wasabiae WPP163]
 gi|261606851|gb|ACX89337.1| RNA methyltransferase, TrmH family, group 3 [Pectobacterium
           wasabiae WPP163]
          Length = 243

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFVLKGRDDRRLQPVIAELEAQGIVIQVASRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             ++AVHQG+ ++         + +        +  L++LD V DPHN+GA LR+A    
Sbjct: 62  A-EDAVHQGIVVKVKEGRKYQENDLPAMLDNIETPFLLILDGVTDPHNLGACLRNADGAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A + K A GA E +P I ++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATVKKVACGAAETVPVISVTNLARTMRLLQERNIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|253991546|ref|YP_003042902.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638424|emb|CAR67046.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (ec 2.1.1.-) (23
           rrna gm2251 2'-o-methyltransferase) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782996|emb|CAQ86161.1| 23S rRNA (guanosine-2'-o-)-methyltransferase [Photorhabdus
           asymbiotica]
          Length = 245

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 14/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTID 102
           +  +YG+H V A L+   ++  ++   K    R     +    N+     V+    Q +D
Sbjct: 2   SEIIYGIHAVKALLDRDPQRFMEVYVLKGREDRRLNPLIHELENI--GVTVQLANRQWLD 59

Query: 103 KIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + AVHQG+  +  P         P L A   +  L+VLD V DPHN+GA LRSA A
Sbjct: 60  NQT-EGAVHQGVIAKVKPGRQYQENDLPDLLAKVETPFLLVLDGVTDPHNLGACLRSADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  +  S   +A   K A GA E +P +R++NL   L+ +       +G + ++
Sbjct: 119 AGVHVVIVPRDRSAQLNATAKKVACGAAESVPLVRVTNLARTLRVLQEHNIWVVGTAGEA 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      IAL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+  
Sbjct: 179 DHTLYQSKLTGPIALVMGAEGEGMRRLTREHCDELISIPMTGSVSSLNVSVATGVCLFEA 238

Query: 277 QNHFA 281
               +
Sbjct: 239 VRQRS 243


>gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
           fluorescens SBW25]
 gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
           fluorescens SBW25]
          Length = 251

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+   +     R+     L   +   +     + +D  V  
Sbjct: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMD--VWV 63

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    + LL+VLD V DPHN+GA LRSA A    
Sbjct: 64  EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + +++  +
Sbjct: 124 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       LI+GAEGKG+R  T+E    + HL M G + +LNVS A  V L+  +   
Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLPMAGSVSSLNVSVATGVCLFEARRQR 243

Query: 281 A 281
            
Sbjct: 244 G 244


>gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 248

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103
           +N  ++G H V++ L + +  + ++        R   D   A       +     Q +DK
Sbjct: 2   KNKVIFGFHAVTSRLRHEASSVEEIYVDSERSDRRMQDLLKAAKAAGIRIIAADSQRLDK 61

Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +VG    HQG+    APL     L   LD++  + LL+VLD + DPHN+GA LR A +  
Sbjct: 62  MVGTRR-HQGVVAMAAPLSLARNLDELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A + K ASGA E +PYI ++NL   L+++       +G + DS K
Sbjct: 121 AHAVIAPKDRSAGINATVEKVASGAAETVPYITVTNLARTLRQLKERDIWVVGTADDSDK 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +       A ++G+EG+G+R  T+ET   +  + M G +++LN+S A+ + LY  + 
Sbjct: 181 SLYEPDYAGGTAFVMGSEGEGMRRLTKETCDELVAIPMFGSVESLNISVASGICLYEARR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 247

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           N  ++G H+V A L +   +  ++ A K    +      D        V+ +  + +D  
Sbjct: 3   NELIFGFHSVEAILESEPERFVEIYALKGRDDKRSTPIIDEARKFGISVQFMQRKALDSK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K   HQG+              LDA+    ++  L+VLD + DPHN+GA LRSA A  
Sbjct: 63  -SKGEQHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +    K A GA E +P I+++NL   L+++   G   +G + ++  
Sbjct: 122 VHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDN 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDMLVKIPMAGTVSSLNVSVATGICLFEVLR 241

Query: 279 HFA 281
              
Sbjct: 242 QRN 244


>gi|16767615|ref|NP_463230.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56416160|ref|YP_153235.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182815|ref|YP_219232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161617640|ref|YP_001591605.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167994986|ref|ZP_02576076.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231407|ref|ZP_02656465.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168239664|ref|ZP_02664722.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168245157|ref|ZP_02670089.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168822505|ref|ZP_02834505.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444737|ref|YP_002043624.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449058|ref|YP_002048412.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469123|ref|ZP_03075107.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734163|ref|YP_002117310.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197263055|ref|ZP_03163129.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197365085|ref|YP_002144722.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|204927331|ref|ZP_03218533.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|213428664|ref|ZP_03361414.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582911|ref|ZP_03364737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213852966|ref|ZP_03382498.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|224586209|ref|YP_002640008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238910527|ref|ZP_04654364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|289829973|ref|ZP_06547424.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|52783321|sp|Q8ZKA2|RLMB_SALTY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|16422930|gb|AAL23189.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56130417|gb|AAV79923.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130448|gb|AAX68151.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161367004|gb|ABX70772.1| hypothetical protein SPAB_05503 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403400|gb|ACF63622.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194407362|gb|ACF67581.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455487|gb|EDX44326.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709665|gb|ACF88886.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197096562|emb|CAR62172.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197241310|gb|EDY23930.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197287651|gb|EDY27042.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204323996|gb|EDZ09191.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205327237|gb|EDZ14001.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334208|gb|EDZ20972.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205336077|gb|EDZ22841.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205341078|gb|EDZ27842.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|224470737|gb|ACN48567.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249459|emb|CBG27324.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996701|gb|ACY91586.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160857|emb|CBW20388.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915467|dbj|BAJ39441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088796|emb|CBY98554.1| hypothetical tRNA/rRNA methyltransferase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222665|gb|EFX47737.1| 23S rRNA guanosine-2'-O- -methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322615531|gb|EFY12451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618591|gb|EFY15480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322621996|gb|EFY18846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627720|gb|EFY24511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631027|gb|EFY27791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637754|gb|EFY34455.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642418|gb|EFY39022.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644013|gb|EFY40561.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650481|gb|EFY46889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653555|gb|EFY49883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659740|gb|EFY55983.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662049|gb|EFY58265.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666202|gb|EFY62380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672622|gb|EFY68733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676052|gb|EFY72123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680536|gb|EFY76574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684570|gb|EFY80574.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322717317|gb|EFZ08888.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
 gi|323132707|gb|ADX20137.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192885|gb|EFZ78111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197239|gb|EFZ82379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201644|gb|EFZ86708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206158|gb|EFZ91120.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213166|gb|EFZ97968.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215540|gb|EGA00284.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219525|gb|EGA04010.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227828|gb|EGA11982.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228998|gb|EGA13127.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236390|gb|EGA20466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238705|gb|EGA22757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241844|gb|EGA25873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248007|gb|EGA31944.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254662|gb|EGA38473.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258279|gb|EGA41956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263575|gb|EGA47096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265829|gb|EGA49325.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270273|gb|EGA53721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|332991180|gb|AEF10163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 243

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|293572686|ref|ZP_06683654.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E980]
 gi|291607272|gb|EFF36626.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E980]
          Length = 286

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65
           E+    +     + ++ +R   KK    NQ     ++   E+ F++G H    AL     
Sbjct: 4   ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
            K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    +
Sbjct: 64  NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SNHGVHQGVVLAITPYEYLS 122

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           LD +       +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K
Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+E++P  R++NL  A+Q++   GF   G         ++      IAL++G EGK
Sbjct: 183 TSTGAVEYVPVARVTNLVQAVQQLKEIGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
           G+ P  ++    +  + M G +++LN S AA + +Y    Q  
Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284


>gi|261380701|ref|ZP_05985274.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
           NJ9703]
 gi|284796412|gb|EFC51759.1| RNA methyltransferase, TrmH family, group 3 [Neisseria subflava
           NJ9703]
          Length = 249

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|167553783|ref|ZP_02347529.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168263278|ref|ZP_02685251.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464747|ref|ZP_02698650.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|198243348|ref|YP_002218253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205355126|ref|YP_002228927.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859514|ref|YP_002246165.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|195632589|gb|EDX51043.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197937864|gb|ACH75197.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205274907|emb|CAR39974.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321857|gb|EDZ09696.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205348047|gb|EDZ34678.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711317|emb|CAR35695.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326626058|gb|EGE32403.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326630284|gb|EGE36627.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 243

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A+     L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|148549961|ref|YP_001270063.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148514019|gb|ABQ80879.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida F1]
          Length = 248

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 126/243 (51%), Gaps = 13/243 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     RL+    L   +  PV     + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+   +  
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244

Query: 280 FAK 282
            AK
Sbjct: 245 RAK 247


>gi|329297950|ref|ZP_08255286.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Plautia stali
           symbiont]
          Length = 244

 Score =  266 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       ++    Q +D  
Sbjct: 2   SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLIAALEAQGIVIQLANRQWLDGQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P  +      P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGKNYQEGDLPDLLASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K ASGA E++P IR++NL   ++ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDRSAPLNATAKKVASGAAENVPLIRVTNLARTMRLLQEYNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      + L++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 NLYQSKMTGAMVLVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|320187058|gb|EFW61769.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella flexneri CDC
           796-83]
 gi|332087040|gb|EGI92174.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 3594-74]
          Length = 240

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L     +  ++   K    +       A       ++    Q +D+   
Sbjct: 1   MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK-S 59

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A    
Sbjct: 60  DGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L
Sbjct: 120 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADHTL 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+      
Sbjct: 180 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239

Query: 281 A 281
           +
Sbjct: 240 S 240


>gi|261206630|ref|ZP_05921328.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289564991|ref|ZP_06445445.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           D344SRF]
 gi|294614952|ref|ZP_06694843.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1636]
 gi|260079123|gb|EEW66816.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289163198|gb|EFD11044.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           D344SRF]
 gi|291592238|gb|EFF23856.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecium
           E1636]
          Length = 286

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65
           E+    +     + ++ +R   KK    NQ     ++   E+ F++G H    AL     
Sbjct: 4   ERTNKHQSKRGFEDKKQNRYSNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
            K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    +
Sbjct: 64  NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           LD +       +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K
Sbjct: 123 LDQLIERTKEKKEDLFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+EH+P  R++NL  A+Q++   GF   G         ++      IAL++G EGK
Sbjct: 183 TSTGAVEHVPVARVTNLVQAVQQLKETGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
           G+ P  ++    +  + M G +++LN S AA + +Y    Q  
Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284


>gi|200386744|ref|ZP_03213356.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199603842|gb|EDZ02387.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 243

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGIRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|302878484|ref|YP_003847048.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
           capsiferriformans ES-2]
 gi|302581273|gb|ADL55284.1| RNA methyltransferase, TrmH family, group 3 [Gallionella
           capsiferriformans ES-2]
          Length = 247

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 119/240 (49%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVG 106
            +YG H V++ +      + ++   ++    R+     L       V  V    +D + G
Sbjct: 6   LIYGFHAVTSRIRQNPEGVMEIYLQSQRQDQRMRDLIALAELSGVRVIPVDSARLDGMAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+A           LS  L+ +    LL+VLD + DPHN+GA LRSA AF    
Sbjct: 66  -GARHQGVAARVDAARRVQHLSDVLETLTEPPLLLVLDGIQDPHNLGACLRSADAFGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A + K A GA E +PYI ++NL   L+++   G   +G + ++K+ L 
Sbjct: 125 VIAPKDRAVGITATVEKVACGAAETVPYITVTNLARTLRELKDQGIWVVGAAGEAKQDLH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  +A++LGAEG+GLR  T ET   +  + M G +++LNVS +  + L+  +   +
Sbjct: 185 SFKHTGPLAIVLGAEGEGLRRLTMETCDELVRIPMLGSVESLNVSVSTGICLFEARRQRS 244


>gi|237729114|ref|ZP_04559595.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
 gi|226908843|gb|EEH94761.1| 23S rRNA 2'-O-methyltransferase [Citrobacter sp. 30_2]
          Length = 243

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  +    ++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLIATLDQPFFLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRG 243


>gi|261342841|ref|ZP_05970699.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
           cancerogenus ATCC 35316]
 gi|288314883|gb|EFC53821.1| RNA methyltransferase, TrmH family, group 3 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 243

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLMPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  ++   ++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLIAGLDNPFFLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E++P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|212709961|ref|ZP_03318089.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
           30120]
 gi|212687370|gb|EEB46898.1| hypothetical protein PROVALCAL_01012 [Providencia alcalifaciens DSM
           30120]
          Length = 245

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 111/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++I ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERSPQRIKEVYILKGREDRRLMPIVHEIEALGIVVQVANRQWMDAQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L     S  L++LD V DPHN+GA LRSA A  
Sbjct: 62  T-EGAVHQGIIANVLPGKQYQEGDLPDLLESTESPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 NLYQSKLTGSVALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|149377618|ref|ZP_01895356.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
 gi|149358091|gb|EDM46575.1| probable tRNA/rRNA methyltransferase [Marinobacter algicola DG893]
          Length = 245

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             +++G H V A L     ++ Q+      ++   +   D         + V  + +D+ 
Sbjct: 3   EEYIFGWHAVEAVLKREPERLQQVWIQTGREDRRVKTVTDTLSELGVRWQVVHRKELDQR 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V    VHQG+    +     + D +            L++LD V DPHN+GA LR+A A 
Sbjct: 63  VA--GVHQGVVAAVSESREWSEDDLLAMLSGSEKPPFLLILDGVTDPHNLGACLRTADAV 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++  K  S S S  + K A GA E +P +R++NL   ++ +   G   IG + ++ 
Sbjct: 121 GVQAVVVPKDKSASLSPTVRKVACGAAETVPLVRVTNLARFMRTIRDDGVWLIGTAGEAD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEGKG+R  T+E    + ++ M G + +LNVS A  V LY   
Sbjct: 181 STLHQADFTGPVALVMGAEGKGMRRLTREHCDLLINIPMLGHVDSLNVSVATGVCLYEAL 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|197251745|ref|YP_002149283.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197215448|gb|ACH52845.1| RNA methyltransferase, TrmH family, group 3 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 243

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLREENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|329119920|ref|ZP_08248594.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464076|gb|EGF10387.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 276

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/249 (29%), Positives = 116/249 (46%), Gaps = 9/249 (3%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTV 96
            R  +      +YG H V+A L    + I +L   ++   A  R   +        V   
Sbjct: 22  PRSANMANQRLIYGFHAVNARLWQNPKSITELYVQQDKSDARTREVLEKAADENVRVHFA 81

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
               ++ I  K A HQG+A           L   LD +R    L+VLD + DPHN+GA L
Sbjct: 82  DASRLNAIA-KGARHQGVAGFIDASRNHVHLEDVLDNLREPPFLLVLDGITDPHNLGACL 140

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A     +I  K  S   +A ++K A GA E +PYI ++NL   L ++  +G   IG
Sbjct: 141 RTADAMGVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLCELKEYGIWIIG 200

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             +  +  L      D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A +
Sbjct: 201 TDTGGESDLYHTDLPDSVAWVMGNEGEGMRRLTREHCDMLVAIPMFGTVESMNVSVSAGM 260

Query: 272 ALYITQNHF 280
            L  T+   
Sbjct: 261 VLGETRRQR 269


>gi|213967932|ref|ZP_03396078.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato T1]
 gi|301383751|ref|ZP_07232169.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
 gi|302059274|ref|ZP_07250815.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
 gi|302132342|ref|ZP_07258332.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927275|gb|EEB60824.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato T1]
          Length = 253

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|320190688|gb|EFW65338.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           O157:H7 str. EC1212]
 gi|323171612|gb|EFZ57258.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli LT-68]
 gi|323182286|gb|EFZ67696.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1357]
 gi|326345488|gb|EGD69231.1| 23S rRNA guanosine-2'-O--methyltransferase [Escherichia coli
           O157:H7 str. 1125]
 gi|332083729|gb|EGI88947.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 155-74]
 gi|332761878|gb|EGJ92152.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2747-71]
 gi|333009255|gb|EGK28711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-218]
 gi|333011990|gb|EGK31375.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-304]
 gi|333012643|gb|EGK32023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-227]
          Length = 240

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L     +  ++   K    +       A       ++    Q +D+   
Sbjct: 1   MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK-S 59

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A    
Sbjct: 60  DGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L
Sbjct: 120 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+      
Sbjct: 180 YQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239

Query: 281 A 281
           +
Sbjct: 240 S 240


>gi|268601172|ref|ZP_06135339.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291044000|ref|ZP_06569716.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268585303|gb|EEZ49979.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291012463|gb|EFE04452.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 255

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 12  IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 70

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 71  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248


>gi|239997218|ref|ZP_04717742.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           ATCC 27126]
          Length = 246

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 116/245 (47%), Gaps = 10/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +  +LYG+H + + L     ++ ++L  K     RL    N        V+    + +D
Sbjct: 2   AQQEWLYGLHAMQSVLEKEPERVMEVLVLKGRNDERLTNIVNQARRFGISVQFCQRKALD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
             V  E  HQG+     P   L    LD +  S    L++VLD V DPHN+GA LR+A  
Sbjct: 62  DKVSGEQ-HQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADG 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  K  S S +  + K A GA E +P I+I+NL   L+ +   G   +G + ++
Sbjct: 121 AGVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGET 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K L         AL++GAEGKG+R  T+ET   +  L M G + +LNVS A  V LY  
Sbjct: 181 DKTLYDVDLKGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATGVCLYEI 240

Query: 277 QNHFA 281
               +
Sbjct: 241 VRQRS 245


>gi|283786859|ref|YP_003366724.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282950313|emb|CBG89960.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 243

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A      L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLIASLEQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|50122542|ref|YP_051709.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|52783288|sp|Q6D127|RLMB_ERWCT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|49613068|emb|CAG76519.1| probable tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 244

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 110/244 (45%), Gaps = 12/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +DK 
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVIAELEAQGIVIQVASRQWLDKQ 61

Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             ++AVHQG+  +           L   LD +     L++LD V DPHN+GA LR+A   
Sbjct: 62  A-EDAVHQGIVAKVKEGRKYQENDLPAMLDNL-EMPFLLILDGVTDPHNLGACLRNADGA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +A + K A GA E IP I ++NL   ++ +       +G + ++ 
Sbjct: 120 GVHAVIVPRDRSAQLNATVKKVACGAAETIPVISVTNLARTMRLLQERNIWIVGTAGEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+   
Sbjct: 180 HTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAV 239

Query: 278 NHFA 281
               
Sbjct: 240 RQRG 243


>gi|320638938|gb|EFX08584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           O157:H7 str. G5101]
          Length = 243

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +  L     L      ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESLGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|28872048|ref|NP_794667.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|52783312|sp|Q87VK2|RLMB_PSESM RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28855301|gb|AAO58362.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331014619|gb|EGH94675.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 250

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|330960080|gb|EGH60340.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 250

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLEELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|268681973|ref|ZP_06148835.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268686441|ref|ZP_06153303.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268622257|gb|EEZ54657.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268626725|gb|EEZ59125.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 255

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 12  IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 70

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 71  GARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248


>gi|268592873|ref|ZP_06127094.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
           DSM 1131]
 gi|291311662|gb|EFE52115.1| RNA methyltransferase, TrmH family, group 3 [Providencia rettgeri
           DSM 1131]
          Length = 249

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++I ++   K    R               V+    Q +D  
Sbjct: 2   SEMIYGIHAVKALLERSPQRIKEVYILKGREDRRLMPLVHEIEALGVVVQVANRQWMDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+  +  P         P L    +S  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  T-EGAVHQGIIAKVLPGKQYQEGDLPDLLENTSSPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   L+ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDKSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQEYNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      IAL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 NLYQSKLTGSIALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|260870912|ref|YP_003237314.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|257767268|dbj|BAI38763.1| 23S rRNA (Gm2251)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|323176061|gb|EFZ61653.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1180]
          Length = 243

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELICIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|238787548|ref|ZP_04631346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           frederiksenii ATCC 33641]
 gi|238724335|gb|EEQ15977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           frederiksenii ATCC 33641]
          Length = 246

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLISELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+               P L A   +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|225076451|ref|ZP_03719650.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
           NRL30031/H210]
 gi|224952130|gb|EEG33339.1| hypothetical protein NEIFLAOT_01497 [Neisseria flavescens
           NRL30031/H210]
          Length = 249

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLISIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|330501633|ref|YP_004378502.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328915919|gb|AEB56750.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 250

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 119/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ QL   ++  A   +   +    +  PV     Q +D+    
Sbjct: 7   VYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQNRVPVGHKERQELDEWA-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQ 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +A + K A GA E IP + ++NL   L+K+   G   +G + + ++ L
Sbjct: 125 AVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEVEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q        L++GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQR 244


>gi|330873777|gb|EGH07926.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330965990|gb|EGH66250.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 253

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 117/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALASENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|257899917|ref|ZP_05679570.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
 gi|257837829|gb|EEV62903.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
          Length = 286

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 15/283 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65
           E+    +     + ++ +R   KK    NQ     ++   E+ F++G H    AL     
Sbjct: 4   ERTNKHQSKRGFEDKKQNRYPNKKQTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
            K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    +
Sbjct: 64  NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           LD +       +     ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K
Sbjct: 123 LDQLIERTKEKKEDPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+E++P  R++NL  A+Q++   GF   G         ++      IAL++G EGK
Sbjct: 183 TSTGAVEYVPVARVTNLIQAVQQLKEIGFWVFGTDMTG-TNFQKWNAKGSIALVIGNEGK 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
           G+ P  ++    +  + M G +++LN S AA + +Y    Q  
Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284


>gi|330828261|ref|YP_004391213.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328803397|gb|AEB48596.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas veronii
           B565]
          Length = 249

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
              +YG+H V+A L     +  ++ A K     RL             V++V  +T+D  
Sbjct: 3   TELIYGIHAVTALLERTPERFIEVWALKGRDDDRLQPLLTELESLGLKVQSVNRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
             +   HQG+                     L A ++   L+VLD V DPHN+GA LRSA
Sbjct: 63  A-EGNNHQGIMARVKEAPKLAEHDLASLLDELAAQQSQPFLLVLDGVTDPHNLGACLRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  +   + ++ K A GA E +P I+++NL   L+++   G   +G + 
Sbjct: 122 DAAGAHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARTLRELQERGVWIVGTAG 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L Q      +AL++GAEGKG+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 182 EADHDLYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241

Query: 275 ITQNHF 280
                 
Sbjct: 242 EAVRQR 247


>gi|161505128|ref|YP_001572240.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866475|gb|ABX23098.1| hypothetical protein SARI_03262 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 243

 Score =  264 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A+     L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLIALHERPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|241760483|ref|ZP_04758576.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
           SK114]
 gi|241318987|gb|EER55489.1| RNA methyltransferase, TrmH family, group 3 [Neisseria flavescens
           SK114]
          Length = 249

 Score =  264 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGNSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D +A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSVAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|240115499|ref|ZP_04729561.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260440690|ref|ZP_05794506.1| RNA methyltransferase [Neisseria gonorrhoeae DGI2]
          Length = 250

 Score =  264 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ3810]
 gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ3810]
 gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
           parahaemolyticus 10329]
          Length = 247

 Score =  264 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+     P           + A   + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKPAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|309380106|emb|CBX21517.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 250

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V  V    +D I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A           L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLGETRRQR 243


>gi|148259103|ref|YP_001233230.1| RNA methyltransferase [Acidiphilium cryptum JF-5]
 gi|146400784|gb|ABQ29311.1| RNA methyltransferase, TrmH family, group 3 [Acidiphilium cryptum
           JF-5]
          Length = 276

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 112/275 (40%), Positives = 163/275 (59%), Gaps = 14/275 (5%)

Query: 16  KDSHYA-------KLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPSRK 67
           +DSH         KL R    +++ Q    + R   S    L+LYG+H+V AAL NP+R+
Sbjct: 4   RDSHGKAGNGGRHKLPRGPHPHRRPQGDAPRDRRPASSAGGLWLYGLHSVEAALANPARR 63

Query: 68  IFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           + +L+ T+   A L     LPHP+P++   +    +D+++G+  VHQG+AL+  PL+ P+
Sbjct: 64  LRRLVVTEEGEAALA--GRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPS 121

Query: 126 L-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           L DA++    ++VLD + DP N+GAILRSA AF    +I  +R +P E   LAK+ASGAL
Sbjct: 122 LNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGAL 181

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243
           E IP +R  N+  AL  + + G   +GL +     L    I N + AL+LGAEG+GLR  
Sbjct: 182 ERIPLLRTVNIARALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRL 241

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+ET   +  L MPG +++LNVS AAAVALY    
Sbjct: 242 TRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276


>gi|293393205|ref|ZP_06637520.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
           odorifera DSM 4582]
 gi|291424351|gb|EFE97565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Serratia
           odorifera DSM 4582]
          Length = 243

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEATGIVIQVANRQWLDDK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V + AVHQG+            + +       ++  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGAVHQGIVARVREGRQYQENDLPGLLESVDTPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A   K A GA E++P IR++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTLRLLQELNVWVVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|257888687|ref|ZP_05668340.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257824741|gb|EEV51673.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
          Length = 286

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 15/283 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHR-DYKKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPS- 65
           E+    +     + ++ +R   KK    NQ     ++   E+ F++G H    AL     
Sbjct: 4   ERTNKHQSKRGFEDKKQNRYPNKKRTGRNQSVSDQNEEALEDNFVFGHHAAVEALQQGRG 63

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
            K+F    ++        +       PVK VP Q ++ +     VHQG+ L   P    +
Sbjct: 64  NKLFLQEDSRGEKVEELKEIAREQAVPVKWVPKQKLETL-SDHGVHQGVVLAITPYEYLS 122

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           LD +       + +   ++LD + DPHN G+ILR+A A   DG+I  K  +   + ++ K
Sbjct: 123 LDQLIERTKEKKEAPFFLILDSIEDPHNFGSILRTADASGVDGVIIPKHRAVGITPIVTK 182

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GA+E++P  R++NL  A+Q++   GF   G         ++      IAL++G EGK
Sbjct: 183 TSTGAVEYVPVARVTNLVQAVQQLKETGFWVFGTDMIG-TNFQKWNAKGSIALVIGNEGK 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
           G+ P  ++    +  + M G +++LN S AA + +Y    Q  
Sbjct: 242 GMSPGLKKEMDELLTIPMTGHVQSLNASVAAGLLMYQAFSQRQ 284


>gi|238750079|ref|ZP_04611582.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
           ATCC 43380]
 gi|238711623|gb|EEQ03838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia rohdei
           ATCC 43380]
          Length = 246

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVVQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+               P L A   +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPALLASVETPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQENNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|16763188|ref|NP_458805.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144667|ref|NP_808009.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213021981|ref|ZP_03336428.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213417716|ref|ZP_03350838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213648977|ref|ZP_03379030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|52783319|sp|Q8Z182|RLMB_SALTI RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|25316741|pir||AI1049 probable tRNA/rRNA methyltransferase (EC 2.1.1.-) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16505496|emb|CAD06846.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140306|gb|AAO71869.1| probable tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 243

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  +    K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEAFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|240123348|ref|ZP_04736304.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240128052|ref|ZP_04740713.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 250

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|148256472|ref|YP_001241057.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
 gi|146408645|gb|ABQ37151.1| putative rRNA methylase [Bradyrhizobium sp. BTAi1]
          Length = 280

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 120/279 (43%), Positives = 164/279 (58%), Gaps = 4/279 (1%)

Query: 4   ISKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +S +  +  F  +      K     R +++ Q +  + R       + LYG HTV+ AL 
Sbjct: 1   MSDRDRKPPFPRQGGKSSGKFAGKPRKFERPQPW--RDREQGSDGPVILYGWHTVTLALG 58

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           NP R+I +L  T+NA  RL  D  +      + V P  ID+ +G +AVHQGL  E  PL 
Sbjct: 59  NPKRRIRKLYLTENAARRLA-DERIETRVTPEIVRPSQIDQRLGPDAVHQGLLAEADPLP 117

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           SP +D +    +++VLD + DPHN+GAILRSA AF    I+TT R+SP  + VLAKSASG
Sbjct: 118 SPDIDTLAAEGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTARHSPEATGVLAKSASG 177

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ALE +P I + NL  AL ++   GFQT+GL S     +      + +AL+LGAEGKGLR 
Sbjct: 178 ALELVPIITVQNLARALTRLDERGFQTVGLDSAGPTDIAAVALREPLALVLGAEGKGLRQ 237

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            T+ET + +A L MPG IK+LNVSNAA +ALYI  +   
Sbjct: 238 LTRETCSVVARLDMPGAIKSLNVSNAAVLALYIGASRLG 276


>gi|332307764|ref|YP_004435615.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 246

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102
            ++ +LYG+H + A +     ++ +L   K    +      +        V+    +T+D
Sbjct: 2   AQHEWLYGIHALEAVIEREPERLIELFVLKGRDDKPINTIINHARKFGIAVQFCQRKTLD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
             V  E  HQG+  +  P        LD +        L+VLD V DPHN+GA LR+A A
Sbjct: 62  DKVNGEQ-HQGVVAKAKPGKQFNENDLDDIIKKSATPFLLVLDGVTDPHNLGACLRTADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+  K  S + + V+ K A GA + IP I+++NL   L+++   G   +G + ++
Sbjct: 121 AGIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + + Q      IAL++GAEGKG+R  T+E    +  L M G + +LNVS A  V LY  
Sbjct: 181 TQSIYQCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGVCLYEI 240

Query: 277 QNHFA 281
               A
Sbjct: 241 VRQRA 245


>gi|157147848|ref|YP_001455167.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Citrobacter koseri
           ATCC BAA-895]
 gi|157085053|gb|ABV14731.1| hypothetical protein CKO_03652 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  ++  L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLIAKFDNPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRLLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLFQSKMTGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|238918378|ref|YP_002931892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|238867946|gb|ACR67657.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 247

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 11/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++   +   K    R               V+    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEK 61

Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V + AVHQG+     P        L   L  + +   L++LD V DPHN+GA LRSA A 
Sbjct: 62  V-EGAVHQGIVARVKPGRQYQENDLPDLLAGLEHPPFLLILDGVTDPHNLGACLRSADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  +  S   +A   K A GA E++P IR++NL   ++ +       +G + ++ 
Sbjct: 121 GVDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTIRLLQQENIWIVGTAGEAD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+   
Sbjct: 181 HSLYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEVV 240

Query: 278 NHFA 281
              +
Sbjct: 241 RQRS 244


>gi|56961913|ref|YP_173635.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
 gi|56908147|dbj|BAD62674.1| tRNA/rRNA methyltransferase [Bacillus clausii KSM-K16]
          Length = 263

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 14/257 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDAN 86
           K+     +K       +  F+ G + V  A+ +    I ++       K  + +L   A 
Sbjct: 3   KRTNPQPKKQMKGDNRQEEFIVGKNPVIEAIKSGH-PIHKIWIGDQSQKGQMTKLTQLAK 61

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLD 139
                 V+T P + +D++VG  + HQG+    A      +DA+             +VLD
Sbjct: 62  -EQNVLVQTAPKRKLDQLVG-HSNHQGVVASVAAYEYADMDALFAKAAAAHEAPFFLVLD 119

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+G+I+R+A A    GII  KR S   +  +AK+++GA+E+IP +R++NL   +
Sbjct: 120 EIEDPHNLGSIMRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEYIPVVRVTNLARTM 179

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++   G    G  + ++    +   N  + L++G+EGKG+    +E    +  + M G 
Sbjct: 180 DELKKQGLWFAGTDAAAEGDYREADYNLPLCLVIGSEGKGISRLIKEKCDFLVSIPMKGR 239

Query: 260 IKALNVSNAAAVALYIT 276
           + +LN S AA++ +Y  
Sbjct: 240 VTSLNASVAASLLMYEV 256


>gi|326796398|ref|YP_004314218.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
           mediterranea MMB-1]
 gi|326547162|gb|ADZ92382.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas
           mediterranea MMB-1]
          Length = 253

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 113/245 (46%), Gaps = 13/245 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIV 105
            ++YG+H V  AL     ++  +   +    +           +    + VP + +D++ 
Sbjct: 5   EWVYGIHAVENALTQQPERVKDVRFQEGRDDKKTQRLMQLCKKNGVRFQVVPRKVLDQLF 64

Query: 106 GK---EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            K     VHQG+  +           L   ++A+  + L+++LD + DPHN+GA LRSA 
Sbjct: 65  AKSKERVVHQGVVAQATMTKAKDEAELHKHVEALEETPLIIILDGITDPHNLGACLRSAD 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S   +A ++K A GA E +P   ++NL   ++K+   G    G + +
Sbjct: 125 AAGAHAVVMPKDKSAPLNATVSKVACGAAESMPVFAVTNLARTMKKLQDQGVWIFGTAGE 184

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +   L         A+++GAEG G+R  T+E    +  L M G++ +LNVS A  V LY 
Sbjct: 185 ATDMLYDHDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYE 244

Query: 276 TQNHF 280
                
Sbjct: 245 AVRQR 249


>gi|148828043|ref|YP_001292796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae PittGG]
 gi|148719285|gb|ABR00413.1| hypothetical protein CGSHiGG_07820 [Haemophilus influenzae PittGG]
          Length = 246

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + L++VLD V DPHN+GA LR+A A   + 
Sbjct: 65  E-VHQGIIARVQAAKELNENDLDEILSNKQNPLVLVLDGVTDPHNLGACLRTADAAGAEA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   ++++ K A GA E +P IR++NL+  L+ +        +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIVRKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp.
           HTCC2999]
          Length = 247

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 118/245 (48%), Gaps = 10/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102
            +  +LYG+H ++A L    ++I +L   K     RL    NL       ++    + +D
Sbjct: 3   QQQDWLYGIHALTAVLEREPQRILELYIAKGRDDERLHKLINLARKEGISIQFCNKKVLD 62

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156
               K   HQG+     P   L    LD +        L+VLD V DPHN+GA+LRSA A
Sbjct: 63  DK-SKGESHQGVVARAYPAKVLTETDLDTIISQSAKPFLLVLDGVTDPHNLGAVLRSADA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  K  S S +A + K A GA + IP I+++NL   L ++       +G + ++
Sbjct: 122 AGVDAVIVPKDKSASLNATVRKVACGAADVIPLIQVTNLARTLSELQEQQIWVVGTAGEA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++ +        +AL++GAEGKG+R  T+E    +  L M G + +LNVS A  + LY  
Sbjct: 182 RQSVFDCDMAGPVALVMGAEGKGMRRLTRERCDELIKLPMLGTVSSLNVSVATGICLYEI 241

Query: 277 QNHFA 281
                
Sbjct: 242 VRQRG 246


>gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
           D2]
 gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
           D2]
          Length = 248

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  ++G H+V A L     +  ++ A K     RL+    L       V+ +  +T+D+ 
Sbjct: 3   NELIFGFHSVEAILAKEPERFIEIYALKGREDKRLNPILELAEQFGVSVQFMHRKTLDEK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              E  HQGL  +           LD +     +  L+VLD V DPHN+GA LRSA A  
Sbjct: 63  ADGEQ-HQGLIAKVKAGKTYSEKDLDEIIARHETPFLLVLDGVTDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   + V  K A GA E +P + ++NL   L+++   G   IG + ++  
Sbjct: 122 VHAVIVPKDNSAKLNGVARKVACGAAETVPLVHVTNLARTLREIKDAGVWVIGTAGETDT 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        IAL++GAEG G+R  T+E   ++  + M G + +LNVS A  + L+    
Sbjct: 182 HVFDAKLTGPIALVMGAEGTGMRRLTREHCDTLVKIPMVGTVSSLNVSVATGICLFEILR 241

Query: 279 HFA 281
              
Sbjct: 242 QRN 244


>gi|238764700|ref|ZP_04625644.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           kristensenii ATCC 33638]
 gi|238697096|gb|EEP89869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           kristensenii ATCC 33638]
          Length = 246

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+               P L     +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|254470423|ref|ZP_05083827.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
           JE062]
 gi|211960734|gb|EEA95930.1| RNA methyltransferase, TrmH family, group 3 [Pseudovibrio sp.
           JE062]
          Length = 289

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 113/277 (40%), Positives = 174/277 (62%), Gaps = 13/277 (4%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQ------------KSRHTSQPENLFLYGVHTVSAA 60
            S   S ++  + N R YKK +   +            + +  ++    ++YG+HT+ AA
Sbjct: 8   KSTGGSRWSPTQGNDRPYKKKRPDGKSSGGSFSKGKPWQKKSAAEDGPFYIYGLHTIEAA 67

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             NP RK  +L+ T+NAL RL+ + NL    PV+   P+ IDK+VGK+AVHQG AL    
Sbjct: 68  FKNPERKRHKLVVTQNALRRLE-ERNLKIDVPVEDASPRDIDKLVGKDAVHQGAALLVDA 126

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L     + +++ QL++ LD V DPHN+GAILRSAVA + D ++TT+R++P E  VLAK+A
Sbjct: 127 LPEYGPEELKDGQLVLALDQVTDPHNVGAILRSAVALNADAVVTTRRHAPEEGPVLAKTA 186

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           SGAL+ I ++RI N++  +++M   G+Q I L S+  + +E     DK  L+LG+EGKG+
Sbjct: 187 SGALDMIKHVRIQNMSRFVEEMRDKGYQAIALDSEGPEAVENTAFTDKTLLVLGSEGKGV 246

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           R   +++  ++A L MPG IK+LNVSNAA ++LY+ +
Sbjct: 247 REGVRKSCDTLARLDMPGEIKSLNVSNAAILSLYVAR 283


>gi|307543249|gb|ADN44264.1| TrmH family RNA methyltransferase [Pseudomonas syringae]
          Length = 255

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YG+H V A L +  +++ Q+   ++    R+     L   +   V     + +D  V  
Sbjct: 7   IYGIHAVEALLRHHPKRVKQVWLAESRNDPRVQTLIALAAENRIDVGNAERREMD--VWV 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L+  LD    + L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLNELLDRTEGAPLILVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + ++++ L
Sbjct: 125 AVIVPKDKSATLTPTVQKVACGAAEVIPLVAVTNLAATLKKLQQRGLWIVGTAGEAEQEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       LI+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YDQDMTGPTILIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|326402255|ref|YP_004282336.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
 gi|325049116|dbj|BAJ79454.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
          Length = 276

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/275 (40%), Positives = 163/275 (59%), Gaps = 14/275 (5%)

Query: 16  KDSHYA-------KLRRNHRDYKKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPSRK 67
           +DSH         KL R    +++ Q    + R   S    L+LYG+H+V AAL NP+R+
Sbjct: 4   RDSHGKAGNGGRHKLPRGPHPHRRSQGDAPRDRRPASSAGGLWLYGLHSVEAALANPARR 63

Query: 68  IFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           + +L+ T+   A L     LPHP+P++   +    +D+++G+  VHQG+AL+  PL+ P+
Sbjct: 64  LRRLVVTEEGEAALA--GRLPHPWPIQPERIERDRLDQMLGRGIVHQGVALQADPLVPPS 121

Query: 126 L-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           L DA++    ++VLD + DP N+GAILRSA AF    +I  +R +P E   LAK+ASGAL
Sbjct: 122 LNDALKRPGPVLVLDQITDPRNVGAILRSAQAFGAAMVIAQERNAPEEGGALAKAASGAL 181

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243
           E IP +R  N+  AL  + + G   +GL +     L    I N + AL+LGAEG+GLR  
Sbjct: 182 ERIPLLRTVNIARALIALKAAGLWVMGLDAAGLSHLSRDAIGNRRAALVLGAEGEGLRRL 241

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+ET   +  L MPG +++LNVS AAAVALY    
Sbjct: 242 TRETCDELVSLPMPGGMESLNVSAAAAVALYEIIR 276


>gi|323492117|ref|ZP_08097279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
           LMG 20546]
 gi|323313678|gb|EGA66780.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio brasiliensis
           LMG 20546]
          Length = 245

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N ++YG+H V A L+    +  +    K     RL    N  +     ++ +  +T+D+ 
Sbjct: 3   NEYIYGIHAVKAVLSREPERFIEAFVLKGRQDDRLLPILNELNVCGVSIQQMTRKTLDEK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+     P   L    LD +     S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  AS-GANHQGIMARVKPAKQLNEHDLDDIIAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSANITATVSKVACGAAEMVPLVRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
 gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           beijerinckii NCIMB 8052]
          Length = 300

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 12/281 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           + K + +   K    +  +  +++ K     N KS    +     + G + V  AL    
Sbjct: 16  EDKDKSVTESKGKAKSYNQVKNKNKKDNMVGNDKSTSAIEEREDIVIGRNAVIEALR-GE 74

Query: 66  RKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           R I  L  + + L    +        +   +K V  + +D + G E VHQG+  +  P  
Sbjct: 75  RTIEALYISNSKLEGSIKTIVGLAKENKILIKEVDKRKLDSMCGGE-VHQGVIAKVTPYK 133

Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              +  +         +  +++LD V DPHN+G+I+R+A  F   GII  KR S S S  
Sbjct: 134 YSEVSDILDLAEKRGEAPFIVILDEVEDPHNLGSIVRTAELFGVHGIILPKRRSASVSTT 193

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + KS+ GA+EH+   +++NL   ++++   G    G    +++   Q       A+I+G 
Sbjct: 194 VYKSSVGAIEHVKIAKVTNLNSTIEELKEKGIWIYGADIRAEEYSYQVDFGGPCAVIIGN 253

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           EG+G+   T E    +  + M G I +LN S A  + +Y  
Sbjct: 254 EGRGISKLTVEKCDKLIKIPMVGKINSLNASVAGGIIMYEV 294


>gi|317049748|ref|YP_004117396.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316951365|gb|ADU70840.1| RNA methyltransferase, TrmH family, group 3 [Pantoea sp. At-9b]
          Length = 244

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  ++G+H V A L    ++  ++   K    R       A       V+    Q +D  
Sbjct: 2   SEIIFGIHAVQALLERDPQRFQEVFILKGRDDRRLQPLVAALEAQGIAVQLANRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+     P  +      P L     +  L++LD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVKPGKNYQEGDLPDLLESIENPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E++P IR++NL   ++ +  +    +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQEYQIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKLPAALALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|332160030|ref|YP_004296607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607412|emb|CBY28910.1| 23s rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664260|gb|ADZ40904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862086|emb|CBX72252.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           enterocolitica W22703]
          Length = 246

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+               P L     + LL+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPALLESVETPLLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|15603818|ref|NP_246892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|52783323|sp|Q9CJP3|RLMB_PASMU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|12722390|gb|AAK04037.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 245

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/240 (34%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H VSA LNN   ++ ++ A K     RL    N  H     ++ V  QT+DK    
Sbjct: 5   IYGIHAVSAFLNNAPERLIEVYALKGRDDKRLQPLLNELHRLGITIQFVNRQTLDKKAEG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P   L    LD +  +    LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGIMARVQPAKELNEADLDTLLQNQSNPLLLVLDGVTDPHNLGACLRTADAAGVCA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +A+  K A GA E +P IR++NL   L+++        +G + ++   L
Sbjct: 124 VIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIWVVGTAGEATNTL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTQLTGGLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|238755910|ref|ZP_04617238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
           ATCC 29473]
 gi|238705869|gb|EEP98258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia ruckeri
           ATCC 29473]
          Length = 248

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               V+    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPVVAELEATGLVVQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+               P L A   S  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPGLLASVESPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P IR++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIRVTNLARTLRVLQENNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|123440768|ref|YP_001004760.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087729|emb|CAL10514.1| putative methylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 246

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H+V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHSVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+               P L     +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|238795294|ref|ZP_04638873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           intermedia ATCC 29909]
 gi|238725379|gb|EEQ16954.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           intermedia ATCC 29909]
          Length = 246

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+               P L    +   L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPALLESVDMPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRLLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEVVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB5]
 gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           BisB5]
          Length = 273

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/242 (47%), Positives = 156/242 (64%), Gaps = 1/242 (0%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +R         LYG HTV+AAL NP R+I +L  T+NA  +L  D N+      + V P 
Sbjct: 30  ARERDPDGPAILYGWHTVTAALANPERRIRKLWLTENAARKLA-DENIDTKVTPEIVRPG 88

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            ID+ +G +AVHQG+  E  PL SP +D +    +++VLD + DPHN+GAILRSA AF+ 
Sbjct: 89  EIDQRLGPDAVHQGMLAEADPLDSPRIDTLPQDGIVLVLDQITDPHNVGAILRSAAAFAV 148

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+TT R+SP  + VLAKSASGALE +P + + NL+ AL +++  GF T+GL S+    
Sbjct: 149 KAIVTTARHSPEATGVLAKSASGALELVPLVLVGNLSRALAELNDRGFLTVGLDSEGSAD 208

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     ++ +AL+LGAEGKGLR  T+ET   +A L MPG IK+LNVSNAAA+ALYI  + 
Sbjct: 209 LAAVELHEPLALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALYIGASR 268

Query: 280 FA 281
             
Sbjct: 269 LG 270


>gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           atlantica T6c]
 gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 246

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102
            ++ +LYG+H + A +     ++ +L   K    +      +        V+    +T+D
Sbjct: 2   AQHEWLYGIHALEAVIEREPERLIELFVLKGRDDKPINSIINHARKFGIAVQFCQRKTLD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
             V  E  HQG+  +  P        LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  DKVNGEQ-HQGVVAKAKPGKQFNENDLDEIIKKSATPFLLILDGVTDPHNLGACLRTADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I+  K  S + + V+ K A GA + IP I+++NL   L+++   G   +G + ++
Sbjct: 121 AGIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWVVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + +        IAL++GAEGKG+R  T+E    +  L M G + +LNVS A  + LY  
Sbjct: 181 TQSIYDCKMQGPIALVMGAEGKGMRRLTREHCDELIKLPMAGSVSSLNVSVATGICLYEI 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|237809345|ref|YP_002893785.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
           9187]
 gi|237501606|gb|ACQ94199.1| RNA methyltransferase, TrmH family, group 3 [Tolumonas auensis DSM
           9187]
          Length = 245

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANL--PHPFPVKTVPPQTIDKI 104
           +  +YG+HTV A L     +  +    K     RL     +   +   ++ V  +T+D  
Sbjct: 3   SELIYGIHTVKALLEQAPERFLEAWVLKGRDDDRLQPLLAILQQYGVSIQYVQRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A+HQG+         L    LD +     +   +VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGAIHQGIIARVREGRKLDESDLDKILEKEQTPFFLVLDGVTDPHNLGACLRTADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S S +    K A GA E +P+I+++NL   L+++   G   +G + ++  
Sbjct: 122 VHALIVPRDKSVSLTGTARKVACGAAESVPFIQVTNLARTLRELKERGVWVVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 182 DVFAAKLTGSLALVMGAEGDGMRRLTREHCDELISIPMAGAVSSLNVSVATGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|319638169|ref|ZP_07992932.1| RNA methylase [Neisseria mucosa C102]
 gi|317400442|gb|EFV81100.1| RNA methylase [Neisseria mucosa C102]
          Length = 249

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   D        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKSDARTRDVLDKAASENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +     L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIVGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|158422502|ref|YP_001523794.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158329391|dbj|BAF86876.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 281

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/252 (45%), Positives = 158/252 (62%), Gaps = 1/252 (0%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K+     +      + +   LYG HTVS AL NP+R+  ++LAT+NA  RL  +   P P
Sbjct: 29  KRKGGPGRPPAWEGENDVALLYGWHTVSEALANPARRFRKILATENAANRLQEE-GFPLP 87

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
              + V P  IDK++G +AVHQGL  E   L SP L  V  S L++VLD + DPHN+GAI
Sbjct: 88  VAPEIVRPSEIDKLLGSDAVHQGLLAEAEHLPSPPLKKVAKSDLVLVLDQITDPHNVGAI 147

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA AF+   I+TT R+SP  + VLAKSASG LEH+P+  ++NL  AL+++ + G   +
Sbjct: 148 VRSAAAFAVGAIVTTARHSPVATGVLAKSASGGLEHVPFCLVTNLARALEELKASGMLVV 207

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL S+    LE       +AL+LGAEGKGLR  T+ET   +A + +PG IK+LNVSNAAA
Sbjct: 208 GLDSEGPADLEDTAMRPPMALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAA 267

Query: 271 VALYITQNHFAK 282
           ++L I +    +
Sbjct: 268 LSLGIARRALKR 279


>gi|293399197|ref|ZP_06643362.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
           F62]
 gi|291610611|gb|EFF39721.1| RNA methyltransferase, TrmH family, group 3 [Neisseria gonorrhoeae
           F62]
          Length = 250

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|71735318|ref|YP_272875.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|289624605|ref|ZP_06457559.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|71555871|gb|AAZ35082.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320321875|gb|EFW77971.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331020|gb|EFW86994.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330865903|gb|EGH00612.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330984552|gb|EGH82655.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 253

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|307249241|ref|ZP_07531238.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251563|ref|ZP_07533470.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306858765|gb|EFM90824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861027|gb|EFM93033.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 259

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        V+ V  QT+D     
Sbjct: 17  IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 76

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+  +  P   L    LDA+   + +  L++LD V DPHN+GA LR+A A   D 
Sbjct: 77  E-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDA 135

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   ++   K A GA E +P IR++NL   ++++        +G + ++   +
Sbjct: 136 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGI 195

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 196 YQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254


>gi|66043847|ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254554|gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330971568|gb|EGH71634.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 251

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|261250419|ref|ZP_05942994.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           orientalis CIP 102891]
 gi|260938988|gb|EEX94975.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           orientalis CIP 102891]
          Length = 245

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P   L    LD +     + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIMARVKPAKQLNENDLDDILAKHEAPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAESVPLVRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|82779438|ref|YP_405787.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella dysenteriae
           Sd197]
 gi|81243586|gb|ABB64296.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 243

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLCQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2]
          Length = 245

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 10/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +  +LYG+H + + L     ++ +++  K     RL    N        V+    + +D
Sbjct: 2   AQQEWLYGLHAMQSVLEQEPERVMEVMVLKGRNDERLTNIVNQARRFGISVQFCQRKALD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156
             V  E  HQG+     P   +    LD +    +  LL+VLD + DPHN+GA LR+A  
Sbjct: 62  DKVNGEQ-HQGVVARAKPARVMDEADLDRILDKESKPLLLVLDGITDPHNLGACLRTADG 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  K  S S +  + K A GA E IP I+++NL   L+ +   G   +G + ++
Sbjct: 121 AGVHAVVVPKDKSASLNGTVRKVACGAAEVIPLIQVTNLARTLKHLQDKGLWIVGTAGET 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K L     +   AL++GAEGKG+R  T+ET   +  L M G + +LNVS A  V LY  
Sbjct: 181 DKTLYDIKLDGPTALVMGAEGKGMRRLTKETCDELVKLPMAGSVSSLNVSVATGVCLYEI 240

Query: 277 QNHFA 281
                
Sbjct: 241 VRQRG 245


>gi|298484907|ref|ZP_07003006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298160594|gb|EFI01616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 253

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL  AL+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARALEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|307247018|ref|ZP_07529072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856470|gb|EFM88619.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 259

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        V+ V  QT+D     
Sbjct: 17  IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 76

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+  +  P   L    LDA+   + +  L++LD V DPHN+GA LR+A A   D 
Sbjct: 77  E-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDA 135

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   ++   K A GA E +P IR++NL   ++++        +G + ++   +
Sbjct: 136 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGI 195

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 196 YQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 254


>gi|330807239|ref|YP_004351701.1| 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375347|gb|AEA66697.1| Putative 23S rRNA (guanosine-2-o-)-methyltransferase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 252

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+   +     R+     L   +   +     + +D  V  
Sbjct: 6   IYGVHAVEALLRHHPKRVKQVWLAEGRSEPRVQALVELATQNKVAIGQAERREMD--VWV 63

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    + LL+VLD V DPHN+GA LRSA A    
Sbjct: 64  EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGACLRSADAAGAL 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  +
Sbjct: 124 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +       LI+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 184 YDQDLTGPTILIMGAEGKGMRRLTREHCDYLVKLPMAGSVSSLNVSVATGVCLFEALRQR 243

Query: 281 A 281
           +
Sbjct: 244 S 244


>gi|268603493|ref|ZP_06137660.1| RNA methylase [Neisseria gonorrhoeae PID1]
 gi|268587624|gb|EEZ52300.1| RNA methylase [Neisseria gonorrhoeae PID1]
          Length = 255

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 12  IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 70

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 71  GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 191 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248


>gi|269214830|ref|ZP_05987243.2| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
           ATCC 23970]
 gi|269208890|gb|EEZ75345.1| RNA methyltransferase, TrmH family, group 3 [Neisseria lactamica
           ATCC 23970]
          Length = 261

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 18  IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 76

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 77  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   ++++  +G   IG     +  L  
Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTMRELKEYGIWIIGTDMGGESDLYH 196

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254


>gi|316985328|gb|EFV64277.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Neisseria meningitidis H44/76]
 gi|325140178|gb|EGC62705.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           CU385]
          Length = 261

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 18  IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 76

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 77  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 137 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 196

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 197 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 254


>gi|300857265|ref|YP_003782249.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 266

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 15/263 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDAN 86
           YKK  +   K+          + G + V  AL + +  I Q+   +  ++    +     
Sbjct: 5   YKKSTNLTDKTEFR----EDLIEGRNAVIEALKSSNTTIEQIFLAEGNMSGSINIILAKA 60

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139
                 VK V  + +DKI    A HQG+  +  P     ++ +       + +  ++VLD
Sbjct: 61  KEKHIVVKQVDRKKLDKISQTGA-HQGVIAQITPYKYCEVEDILEYAREKKEAPFIIVLD 119

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN GAI+R+A      GII  KR +   + V+ KS+ GA E++   +++NL   +
Sbjct: 120 EIEDPHNFGAIIRTAEICGAHGIIIPKRRNVGITPVVYKSSVGAAEYMKICKVTNLNTTI 179

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +K+   G    G     +            ALI+G+EG+G+   T+E    +  + M G 
Sbjct: 180 EKLKKDGIWVYGADMSGENYCFDVDFKGPAALIIGSEGRGIAKLTKEKCDVLVKIPMVGR 239

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
           + +LN S A  + +Y       K
Sbjct: 240 VSSLNASVAGGILMYEILKQRIK 262


>gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 320

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/298 (27%), Positives = 140/298 (46%), Gaps = 29/298 (9%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHT 56
            ++SE+   +K      L    R +KK +    K R   QP         +N  +YG H 
Sbjct: 11  TRESERPQPIKIKGKRVLSHPIRTHKKAEVIPPKPRLLDQPVQTKNSEEQDNDLIYGRHP 70

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTIDKIVGKE 108
           V +AL +  R + +L  T    +RL +D    H           +  V P+ +D+I    
Sbjct: 71  VLSALESH-RNLNRLWIT----SRLRYDPRFHHLVLQAKDNGTVIDEVDPKRLDQIT-NG 124

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+A + AP     L+ +       +  +++V D + DPHN+GAI+R+A A    G+
Sbjct: 125 GNHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGAQGL 184

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R +   ++ + K A+GALE+    R+ NL+ AL+++   GF   G ++   +PL  
Sbjct: 185 VIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESGFWIYGTAATGSEPLHS 244

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   L++G+EG+GL   TQ++   +  + + G   +LN S A  +ALY      
Sbjct: 245 VRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQR 302


>gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 314

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 157/282 (55%), Gaps = 17/282 (6%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
            + + +   +  H +  RR+        +   +         L+LYG H V AAL N +R
Sbjct: 29  SEGDTMNHRESRHKSAPRRDP-------AKGGERPAKLPSNQLWLYGAHAVLAALANKAR 81

Query: 67  KIFQLLATKNALARLDWDANLPHPFPV----KTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           KI +++ T  AL                   +T   Q +D+++   AVHQG+A+    L 
Sbjct: 82  KIRRIVLTVEALRSHAASIQRARALRPLPGEETTERQELDRLLPPGAVHQGIAVLAEHLE 141

Query: 123 SPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           SP ++ +      R+  ++MVLD V DPHN+GAILRSA AF    ++ T R+SP E+  L
Sbjct: 142 SPGIEDIGRLAQNRDHAVVMVLDQVTDPHNVGAILRSAAAFGALAVVVTDRHSPEETGTL 201

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AKSASGALE +P +R++N+  AL+++   GF T GL+ ++ + L Q   + KIAL++GAE
Sbjct: 202 AKSASGALEVMPLVRVTNMVRALEQLKEAGFWTAGLAGEATQTLAQAKLSGKIALVMGAE 261

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+GLR  T+E    +  L M  ++++LNVSNAAA++LY    
Sbjct: 262 GEGLRRLTREHCDHLVKLPMSDLVESLNVSNAAAISLYELAR 303


>gi|283834798|ref|ZP_06354539.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
           ATCC 29220]
 gi|291069044|gb|EFE07153.1| RNA methyltransferase, TrmH family, group 3 [Citrobacter youngae
           ATCC 29220]
          Length = 243

 Score =  263 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +   +   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQDVFILKGREDKRLLPLIHALEAQGVVIQLANRQFLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+     P         P L A  +    ++LD V DPHN+GA LRSA A  
Sbjct: 62  -SEGAVHQGIIARVKPGRQYQENDLPDLIAALDQPFFLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELIGIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRG 243


>gi|86749323|ref|YP_485819.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           HaA2]
 gi|86572351|gb|ABD06908.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
           HaA2]
          Length = 273

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 114/242 (47%), Positives = 154/242 (63%), Gaps = 1/242 (0%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +R         LYG HTV+AAL NP+R+I +LL T+NA  +L  D N+        V P 
Sbjct: 30  ARERDPDGPAILYGWHTVTAALANPARRIRKLLLTENAARKLA-DENINTRITPDIVRPG 88

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            ID+ +G +AVHQG+  E  PL SP +D +    +++VLD + DPHN+GAI+RSA AF+ 
Sbjct: 89  EIDQRLGPDAVHQGMLAEVDPLESPRIDTLPEDGIVLVLDQITDPHNVGAIMRSAAAFAV 148

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+TT R+SP  + VLAKSASGALE +P + ++NL  AL ++   G+ T+GL S+    
Sbjct: 149 KAIVTTARHSPEATGVLAKSASGALELVPLVLVTNLARALTELEDRGYLTVGLDSEGSAD 208

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L        +AL+LGAEGKGLR  T+ET   +A L MPG IK+LNVSNAAA+ALYI  + 
Sbjct: 209 LAAVELRQPLALVLGAEGKGLRQLTRETCNVVARLDMPGAIKSLNVSNAAALALYIGASR 268

Query: 280 FA 281
             
Sbjct: 269 LG 270


>gi|302185448|ref|ZP_07262121.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
 gi|330899904|gb|EGH31323.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330978939|gb|EGH77998.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 253

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
 gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
          Length = 245

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLERDPVRFIEAYVLKGRQDERLMPVLNELTQIGVSIQQMNRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+  +  P   L    LD++       LL++LD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIIAKVKPAKQLNENDLDSILSQHAQPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G    G + ++  
Sbjct: 122 VAAVIVPKDRSAPLTATVSKVACGAAETVPLVRVTNLARTMRSLQEQGIWIAGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q   +  +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLDGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|104783862|ref|YP_610360.1| RNA methyltransferase [Pseudomonas entomophila L48]
 gi|95112849|emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           entomophila L48]
          Length = 247

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     R+     L     V+      + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S S +AV+ K A GA E IP + ++NL+  L+K+   G   +G + ++++ +
Sbjct: 125 AVVIPKDKSASLTAVVRKVACGAAEVIPLVAVTNLSRTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQR 244

Query: 281 AK 282
            K
Sbjct: 245 QK 246


>gi|317126837|ref|YP_004093119.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315471785|gb|ADU28388.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 252

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTID 102
            E  +++G + V  AL    R I ++   + +L        + +       + VP + +D
Sbjct: 3   QELEYIFGKNPVLEALR-GKRPINKIWIAEGSLRGPMIQVLELSKEKKINTQIVPKKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V K+  HQG+  + A      +D +             ++LD + DPHN+G+ILR+A 
Sbjct: 62  QMVPKDQQHQGVIAQVAAYEFQEIDVLFERARQKNEQPFFLLLDELEDPHNLGSILRTAD 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR S   +  +AK+++GA+EH+P  R++NL   + ++   G   +G  + 
Sbjct: 122 AVGAHGIIVPKRRSVGLTYTVAKASAGAIEHVPVTRVTNLARTMDELKKEGLWFVGTDAK 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++   +   +  + L++G+EG+G+    +E    +  + + G + +LN S AA++ +Y 
Sbjct: 182 GEQDYREVDLDMPVVLVIGSEGRGISRLVKEKCDFLVQIPLAGKVTSLNASVAASLLMYE 241

Query: 276 TQNHF 280
                
Sbjct: 242 VYRRR 246


>gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708]
          Length = 323

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 31/306 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-----------PENL 49
           +N+  + K  +   +K          H+   + +SF+ K R + Q            E+ 
Sbjct: 8   INITGETKRVQPIKIKGKRVIANPTRHQTKGESKSFSSKPRPSHQSSLPTPAIKSPEESD 67

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTI 101
            +YG H V +AL N  R + +L  T    ARL +D    H           +  V P+ +
Sbjct: 68  LIYGRHPVLSALEN-QRGLNRLWIT----ARLRYDPRFHHLILQAKDNGTVIDEVEPKRL 122

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           D+I    A HQG+A + AP     L+ +          +++V D + DPHN+GAI+R+A 
Sbjct: 123 DQITD-GANHQGIAAQIAPYAYMELEDLITQAKSVTDPVIVVADGITDPHNLGAIIRTAE 181

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++  +R +   ++ + K A+GALE+ P  R+ NL+ AL+++   G+   G ++ 
Sbjct: 182 AIGSQGLVIPQRRASGITSTVVKVAAGALENFPVARVINLSRALEQLKEAGYWIYGTAAA 241

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +P+     +    L++G+EG GL   TQ +   +  + + G   +LN S AA +ALY 
Sbjct: 242 GSEPIHTVKFSGSTVLVIGSEGDGLSMLTQRSCDILVSIPLQGKTPSLNASVAAGMALYE 301

Query: 276 TQNHFA 281
                +
Sbjct: 302 IYRQRS 307


>gi|146340002|ref|YP_001205050.1| putative rRNA methylase 23S rRNA
           (guanosine-2'-O-)-methyltransferase rlmB-like
           [Bradyrhizobium sp. ORS278]
 gi|146192808|emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA
           (guanosine-2'-O-)-methyltransferase rlmB-like
           [Bradyrhizobium sp. ORS278]
          Length = 297

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 120/280 (42%), Positives = 167/280 (59%), Gaps = 4/280 (1%)

Query: 3   LISKKKSEKIFSLKDSHYA-KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           ++S++  +  F  +    A K     R + +     ++      P  + LYG HTVS AL
Sbjct: 17  VMSERDRKSPFRRQGGKSAGKFTGKPRGFDRPHGRWERDSDADGP--VILYGWHTVSLAL 74

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            NP R+I +L  T+NA  RL  D ++      + V P  ID+ +G +AVHQGL  E  PL
Sbjct: 75  ANPKRRIRKLYLTENAARRLA-DEHIETRVTPEIVRPSQIDQRLGPDAVHQGLLAEADPL 133

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            SP +D +    +++VLD + DPHN+GAILRSA AF    I+TT R+SP  + VLAKSAS
Sbjct: 134 PSPDIDTLAPEGMILVLDQITDPHNVGAILRSAAAFDVKAIVTTARHSPEATGVLAKSAS 193

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GALE +P I + NL  AL +++  GFQT+GL S     +        +AL+LGAEGKGLR
Sbjct: 194 GALELVPMITVQNLARALTRLNERGFQTVGLDSAGDTDIAAVTLRQPLALVLGAEGKGLR 253

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             T+ET +++A L MPG IK+LNVSNAA +ALY+  +   
Sbjct: 254 QLTRETCSAVARLDMPGAIKSLNVSNAAVLALYVGASRLG 293


>gi|260912878|ref|ZP_05919364.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
           dagmatis ATCC 43325]
 gi|260633256|gb|EEX51421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pasteurella
           dagmatis ATCC 43325]
          Length = 245

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/240 (35%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H VSA LN    ++ ++   K     RL    N  H     V+ V  QT+DK    
Sbjct: 5   IYGIHAVSAFLNTAPERLIEVYVLKGREDKRLQPLLNELHRLGISVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P   L    LDA+   + S LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGIIARIQPAKELNEADLDAILKNKQSPLLLVLDGVTDPHNLGACLRTADAAGVCA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKKPL 220
           +I  K  S   S++  K A GA E IP IR++NL   L+ +        +G + ++ + L
Sbjct: 124 VIVPKDKSAQLSSIARKVACGAAEVIPLIRVTNLARTLRDLQNEHNIWVVGTAGEATETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQAKLTGGLALVMGAEGDGMRRLTRENCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|167464999|ref|ZP_02330088.1| 23S rRNA methyltransferase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381143|ref|ZP_08055146.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154719|gb|EFX46990.1| 23S rRNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 245

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 120/244 (49%), Gaps = 12/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
             F+ G H+V  AL +  R I ++   +NA  +           H   V+TV  + +D++
Sbjct: 2   EEFIGGKHSVLEALRSG-RTINKIWIAENAGKQQAGSVLSEAKKHGIIVQTVDRRKLDQM 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+  + A     +++ + N          +++LD + DPHN+G+ILR+A   
Sbjct: 61  A-EGIQHQGIVAQVAAYEYASVEDILNKATQKGEDPFILILDEIEDPHNLGSILRTADCT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   +A ++K+++GA+E++P  R++NL   ++++   G    G   +  
Sbjct: 120 GVHGVIIPKRRSAGLTATVSKTSAGAVEYVPVARVTNLAQTIEQLKEKGIWVAGTDVNQA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + +      IAL++G E KG+    +E    +  L M G I +LN S AA V +Y   
Sbjct: 180 EDVYRSNFRMPIALVIGNENKGVGRLVKEKCDFLVKLPMHGQINSLNASVAAGVLMYEVA 239

Query: 278 NHFA 281
              +
Sbjct: 240 RQRS 243


>gi|119471828|ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119445318|gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 247

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           N  ++G H+V A L     +  ++ A K    +      D        V+ +  + +D  
Sbjct: 3   NELIFGFHSVEAILAKEPERFLEIYALKGRDDKRLTPIIDEARKFGISVQFMQRKALDNK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K+  HQG+              LD +     +  L+VLD + DPHN+GA LRSA A  
Sbjct: 63  -SKDEQHQGIIANVKAAPTYNEKDLDVIIAREETPFLLVLDGITDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +    K A GA E +P I+++NL   L+++   G   +G + ++  
Sbjct: 122 VHAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDT 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGSVSSLNVSVATGICLFEVLR 241

Query: 279 HFA 281
              
Sbjct: 242 QRN 244


>gi|219872021|ref|YP_002476396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219692225|gb|ACL33448.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 244

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 10/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V + L+    ++ ++   K     RL    N        V+ V  Q +D  V  
Sbjct: 5   IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLGIRVQQVNRQALDNKVQG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+  +  P   L    LD +   + +  L++LD V DPHN+GA LR+A A   D 
Sbjct: 65  E-VHQGIIAKIIPAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   ++   K A GA E +P IR++NL   ++++       +G + ++ + L 
Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTAGEATESLY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 184 QVKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241


>gi|320173666|gb|EFW48856.1| 23S rRNA guanosine-2'-O--methyltransferase [Shigella dysenteriae
           CDC 74-1112]
          Length = 243

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+     +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTRVHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|269137719|ref|YP_003294419.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983379|gb|ACY83208.1| 23S rRNA (guanosine-2-O-)-methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557775|gb|ADM40439.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Edwardsiella
           tarda FL6-60]
          Length = 247

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 11/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++   +   K    R               V+    Q +D+ 
Sbjct: 2   SEIIYGIHAVKALLEQDPQRFLDVFVMKGREDRRLLPLLQQLEECGIRVQVAQRQWLDEK 61

Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V + AVHQG+     P        L   L  + +   L++LD V DPHN+GA LRSA A 
Sbjct: 62  V-EGAVHQGIVARVKPGRQYQENDLPDLLAGLDHPPFLLILDGVTDPHNLGACLRSADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  +  S   +A   K A GA E++P IR++NL   ++ +       +G + ++ 
Sbjct: 121 GVDAVIVPRDRSAQLNATAKKVACGAAENVPLIRVTNLARTMRLLQQESIWIVGTAGEAD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+   
Sbjct: 181 HSLYQSRMTGAMALVMGAEGDGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAV 240

Query: 278 NHFA 281
              +
Sbjct: 241 RQRS 244


>gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 247

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 10/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           N  ++G H+V A L     +  ++ A K    +      +        V+ +  + +D  
Sbjct: 3   NELIFGFHSVEAILAKEPERFIEIYALKGRDDKRLSPVIEQARQFGISVQFMQRKALDNK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K+  HQG+              LD +    ++  L+VLD + DPHN+GA LRSA A  
Sbjct: 63  A-KDEQHQGIIANVKAARVFNEKDLDEIIEREDTPFLLVLDGITDPHNLGACLRSADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +    K A GA E +P I+++NL   L+++   G   +G + ++  
Sbjct: 122 VHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDT 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGTVSSLNVSVATGICLFEVLR 241

Query: 279 HFAK 282
             A+
Sbjct: 242 QRAE 245


>gi|329914600|ref|ZP_08276137.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327545100|gb|EGF30394.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 242

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTV--PPQTIDKIVG 106
            ++G H V+A L + +  + ++   T     R+           V+ +    Q +  +VG
Sbjct: 1   MIFGFHAVTARLRHEASTVEEIYVDTARHDQRMKDMLKAAAAVKVRVIQADDQRLSNMVG 60

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  +   +     L   LDA+    LL+VLD + DPHN+GA LR A       
Sbjct: 61  TRR-HQGVVAKAGEVSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHA 119

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A  AK ASGA E +PYI ++NL   L+ +   G   IG + D+++ L 
Sbjct: 120 VIAPKDRAVGLNATAAKVASGAAESVPYITVTNLARTLRDLKDRGIWLIGTTEDAEQTLY 179

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q       ALI+G+EG+G+R  T ET   + H+ M G +++LNVS A+ V L+  +   
Sbjct: 180 QGDFTGPTALIMGSEGEGMRRLTTETCDFLVHIPMFGAVESLNVSVASGVCLFEARRQR 238


>gi|240080889|ref|ZP_04725432.1| RNA methylase [Neisseria gonorrhoeae FA19]
 gi|240112748|ref|ZP_04727238.1| RNA methylase [Neisseria gonorrhoeae MS11]
 gi|240117794|ref|ZP_04731856.1| RNA methylase [Neisseria gonorrhoeae PID1]
 gi|254493607|ref|ZP_05106778.1| RNA methylase [Neisseria gonorrhoeae 1291]
 gi|268597006|ref|ZP_06131173.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae FA19]
 gi|268598815|ref|ZP_06132982.1| RNA methylase [Neisseria gonorrhoeae MS11]
 gi|226512647|gb|EEH61992.1| RNA methylase [Neisseria gonorrhoeae 1291]
 gi|268550794|gb|EEZ45813.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae FA19]
 gi|268582946|gb|EEZ47622.1| RNA methylase [Neisseria gonorrhoeae MS11]
          Length = 250

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSTAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|238786345|ref|ZP_04630280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           bercovieri ATCC 43970]
 gi|238712744|gb|EEQ04821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           bercovieri ATCC 43970]
          Length = 246

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVANRQWLDAQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+            + +           L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|309787684|ref|ZP_07682295.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|308924434|gb|EFP69930.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
          Length = 240

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG+H V A L     +  ++   K    +       A       ++    Q +D+   
Sbjct: 1   MIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK-S 59

Query: 107 KEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A    
Sbjct: 60  DGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVH 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++   L
Sbjct: 120 AVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTL 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+      
Sbjct: 180 CQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 239

Query: 281 A 281
           +
Sbjct: 240 S 240


>gi|187730319|ref|YP_001882871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shigella boydii CDC
           3083-94]
 gi|187427311|gb|ACD06585.1| RNA methyltransferase, TrmH family, group 3 [Shigella boydii CDC
           3083-94]
          Length = 243

 Score =  262 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A       +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALQERAPERFQEVFILKGREDKRLLPLIHALEAQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++  
Sbjct: 121 VHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRTMRMLQEENIWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+    
Sbjct: 181 TLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
           Nb-255]
 gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
           Nb-255]
          Length = 283

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 119/254 (46%), Positives = 165/254 (64%), Gaps = 1/254 (0%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R+++  +   +K+R TS      LYG HTV+AAL NP R+I +LL T+NA  RL  + N+
Sbjct: 28  RNHQPKRGSARKARETSPDGPAVLYGWHTVTAALANPRRRIRKLLVTENAARRLTHE-NI 86

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             P   + V P  ID+ +G +AVHQGL  E  PL SP ++ +    +++VLD + DPHN+
Sbjct: 87  DTPITPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPDIETLTQEGIVLVLDQITDPHNV 146

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RSA AFS   I+TT R+SP  + VLAKSASGALE +P + + NL  AL  ++  GF
Sbjct: 147 GAIMRSAAAFSVKAIVTTARHSPEATGVLAKSASGALEIVPLVLVQNLARALAGLNDRGF 206

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            T+GL S   + L      + +AL+LGAEGKGLR  T++T +++A L MPG IK+LNVSN
Sbjct: 207 MTVGLDSAGSENLAAVPLREPLALVLGAEGKGLRQLTRDTCSAVARLDMPGHIKSLNVSN 266

Query: 268 AAAVALYITQNHFA 281
           AA +ALYI  +   
Sbjct: 267 AAVLALYIGASRLG 280


>gi|254506517|ref|ZP_05118659.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus 16]
 gi|219550691|gb|EED27674.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus 16]
          Length = 245

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLECEPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P   L    LD +     S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++ +
Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAGEATQ 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|114331604|ref|YP_747826.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114308618|gb|ABI59861.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosomonas eutropha C91]
          Length = 260

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 9/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTV--PPQTIDKIVG 106
           +++G H +++ L      I ++   T     R     NL      + +      + K+ G
Sbjct: 6   YIFGFHAITSRLRQHPDSIKEIYLDTNRQDQRARDLMNLAETTSSRLILCNQDRLCKMTG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+A     L     L   LD +     L+VLD V DPHN+GA LR A AF    
Sbjct: 66  TTR-HQGVAAHVMKLQQYTALEDLLDGLTEPAFLLVLDGVKDPHNLGACLRVADAFGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   SA + K ASGA++ +P+  ++NL   L+++   G   +G ++D+   L+
Sbjct: 125 VIVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEEGIWIVGTTADASDTLD 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  IA +LGAEG+G+R  T+ET   +  + M G I++LNVS +A + L+ T   
Sbjct: 185 SITLTRPIAWVLGAEGEGMRRLTRETCDQLVSIPMSGSIESLNVSVSAGICLFETCRQ 242


>gi|237747635|ref|ZP_04578115.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229378997|gb|EEO29088.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 249

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           +N  ++G H V++ L + +  + +L        R   D           +       +DK
Sbjct: 2   KNKVIFGFHAVTSRLRHEASSVEELYVDAERSDRRMQDLLKVAKAAGVRIIQADGARLDK 61

Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +VG    HQG+    AP+     L   LDA+  + LL+VLD + DPHN+GA LR A +  
Sbjct: 62  MVGTRR-HQGVVAMAAPVSLARNLDELLDAIEGAPLLLVLDGITDPHNLGACLRVADSVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  +   +A + K ASGA E +PYI ++NL   L+++       +G + D+++
Sbjct: 121 AHAVIAPKDRAVGINATVQKVASGAAETVPYITVTNLARTLRQLQERDIWVVGTTDDAEE 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +   +  +A ++G+EG+G+R  T+E    +  + M G +++LN+S A+ + LY  + 
Sbjct: 181 SLYEPDYSGGVAFVMGSEGEGIRRLTRENCDQLVAIPMFGSVESLNISVASGICLYEARR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|94500543|ref|ZP_01307074.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
           RED65]
 gi|94427333|gb|EAT12312.1| RNA methyltransferase, TrmH family, group 3 [Oceanobacter sp.
           RED65]
          Length = 246

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKI 104
           +  ++G+H V   L     ++ ++   K     RL     L +     ++ V    +D  
Sbjct: 3   DEIVFGIHAVKNLLKRSPERVREIFLQKGRDDERLMDIVQLANKNSINLQAVKKTVLDDR 62

Query: 105 VGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              +  HQG+     P+ S         LD++     L+VLD V DPHN+GA LR+A A 
Sbjct: 63  A--QGNHQGVIARAKPVQSKDENQLLQQLDSLDEPAFLLVLDSVTDPHNLGACLRTADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   +A ++K A GA E +P+ +++NL   ++++   G    G + ++ 
Sbjct: 121 GVHGVIAPKDKAVGLTATVSKVACGAAESVPFYQVTNLARTMKELQERGIWLYGTAGEAS 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + +      IA+++GAEGKGLR  T+E    + ++ M G + +LNVS A  V L+   
Sbjct: 181 ESVFKTDLKGPIAIVMGAEGKGLRRLTREACDHLINIPMAGDVSSLNVSVATGVCLFEAV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|332289064|ref|YP_004419916.1| 23S rRNA [Gallibacterium anatis UMN179]
 gi|330431960|gb|AEC17019.1| 23S rRNA [Gallibacterium anatis UMN179]
          Length = 245

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H VSA L+    +  ++   K     RL    N  H     V+ +  Q +DK    
Sbjct: 5   IYGIHAVSAVLSTTPERFIEVFVLKGREDKRLQPLLNELHQLGISVQFLTRQALDKKANG 64

Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E  HQG+  +  P    T + +      +   LL+VLD V DPHN+GA LR+A A   D 
Sbjct: 65  E-THQGIIAKVQPPKEQTENDLYALLQQKKHPLLLVLDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  +  S   ++V  K A GA E +P IR++NL   L+ +   +    +G + ++   +
Sbjct: 124 VIIPRDKSAQLTSVARKVACGAAEVVPLIRVTNLARTLKTLQQDYNIWVVGTAGEANSSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQNKLTGALALVMGAEGDGMRRLTREHCDQLVSIPMQGSVSSLNVSVATGVCLFEIVRQR 243


>gi|261377685|ref|ZP_05982258.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
           14685]
 gi|269145953|gb|EEZ72371.1| RNA methyltransferase, TrmH family, group 3 [Neisseria cinerea ATCC
           14685]
          Length = 250

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|32033775|ref|ZP_00134060.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207530|ref|YP_001052755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975500|ref|YP_001651093.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190149311|ref|YP_001967836.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250521|ref|ZP_07336718.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251865|ref|ZP_07338036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244843|ref|ZP_07526942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253797|ref|ZP_07535651.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256063|ref|ZP_07537851.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258253|ref|ZP_07539996.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260494|ref|ZP_07542188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307262624|ref|ZP_07544254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126096322|gb|ABN73150.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875601|gb|ABY68649.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914442|gb|ACE60694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649295|gb|EFL79480.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650509|gb|EFL80668.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854288|gb|EFM86494.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863281|gb|EFM95221.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865485|gb|EFM97380.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867713|gb|EFM99558.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869806|gb|EFN01589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306872047|gb|EFN03761.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 247

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        V+ V  QT+D     
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLTPLLNELQRLGISVQQVNRQTLDNKAQG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+  +  P   L    LDA+   + +  L++LD V DPHN+GA LR+A A   D 
Sbjct: 65  E-VHQGIIAKVVPQKELNEHDLDAILAQKQNPFLLILDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   ++   K A GA E +P IR++NL   ++++        +G + ++   +
Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 184 YQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242


>gi|17545948|ref|NP_519350.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|52783318|sp|Q8Y016|RLMB_RALSO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|17428243|emb|CAD14931.1| probable 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna
           gm2251 2'-o-methyltransferase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 249

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + +R I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+  +   L     L   LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      +
Sbjct: 185 RADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRS 244


>gi|313668627|ref|YP_004048911.1| RNA methylase [Neisseria lactamica ST-640]
 gi|313006089|emb|CBN87550.1| putative RNA methylase [Neisseria lactamica 020-06]
          Length = 250

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V  V    +D I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+A           L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVAGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGGGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|260779505|ref|ZP_05888395.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604314|gb|EEX30618.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 245

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLAKEPERFVEAFVLKGRQDDRLMPILNELQMCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+  +  P   L    LD +    ++ LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIMAKVKPAKQLNENDLDDILAQHSAPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAETVPLVRVTNLARTMRALQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073973|gb|ADJ63372.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 245

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            ++G H V++ + + +  + ++        R   D   A       +     Q +  +VG
Sbjct: 5   MIFGFHAVTSRIRHEASSVDEIYVDAERRDRRMLDLLHAAKEANVRIIQADDQRLAAMVG 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  + A L     L   LDAV    LL++LD + DPHN+GA LR A       
Sbjct: 65  TRR-HQGVVAKAAALSLARTLDELLDAVVGPPLLLILDGITDPHNLGACLRVADGAGAHA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A   K +SGA + +PYI ++NL   ++ +   G   IG S D++K L 
Sbjct: 124 VIAPKDRAVGLNATAMKVSSGASDTVPYITVTNLARTMRDLKERGVWIIGTSDDAEKGLY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +       AL++G+EG+G+R  T+ET   + ++ M G +++LNVS A+ V LY  +   
Sbjct: 184 EGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIPMFGSVESLNVSVASGVCLYEARRQR 242


>gi|237798286|ref|ZP_04586747.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021138|gb|EGI01195.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 253

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH + A L +  +++  +   +     R+    +L   +   +     + +D  V  
Sbjct: 7   IYGVHALEALLRHHPKRVKHIWLAEGRNDPRVQTLVSLASENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD      LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|301154986|emb|CBW14449.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 256

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 122/252 (48%), Gaps = 11/252 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKT 95
           K+     P +  +YG+H V++ L N   ++ ++   K     RL    N        V+ 
Sbjct: 3   KNNKQENPMSENIYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQF 62

Query: 96  VPPQTIDKIVGKEAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGA 149
           V  QT+DK    E VHQG+         L    LD +   + + LL+VLD V DPHN+GA
Sbjct: 63  VNRQTLDKKSNGE-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGA 121

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQ 208
            LR+A A     +I  K  S   +++  K A GA E +P IR++NL   L+ +       
Sbjct: 122 CLRTADAAGVSAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIW 181

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +G + ++ + + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A
Sbjct: 182 VVGTAGEATETIYQSKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVA 241

Query: 269 AAVALYITQNHF 280
             V L+      
Sbjct: 242 TGVCLFEIVRQR 253


>gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2]
 gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2]
          Length = 249

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 125/246 (50%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  R++++L   +N     A+   D        +  VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSG-RELYKLWMAENTVKGQAQQVVDLAAKKGVTIHYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V  +  HQG+  + A      LD +            ++VLD + DPHN+G+I+R+A 
Sbjct: 62  QMVSGQ--HQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP ++++NL+  L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 GQQDYRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                +
Sbjct: 240 VYRKRS 245


>gi|304387767|ref|ZP_07369947.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338243|gb|EFM04373.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
          Length = 250

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIIELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|52078591|ref|YP_077382.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
           ATCC 14580]
 gi|52783952|ref|YP_089781.1| YacO [Bacillus licheniformis ATCC 14580]
 gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
           ATCC 14580]
 gi|52346454|gb|AAU39088.1| YacO [Bacillus licheniformis ATCC 14580]
          Length = 249

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 126/246 (51%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  R++++L   +N     A+   D    +   +  VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSG-RELYKLWMAENTVKGQAQQVVDLAAKNGVTIHYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V  +  HQG+  + A      LD +            ++VLD + DPHN+G+I+R+A 
Sbjct: 62  QMVSGQ--HQGVVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP ++++NL+  L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 GQQDYRSLDGNMPLALVIGSEGKGMGRLVKEKCDFLIRLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                +
Sbjct: 240 VYRKRS 245


>gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 259

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 113/254 (44%), Positives = 158/254 (62%), Gaps = 1/254 (0%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           +R     ++ +S   +    +  + + LYG H V+ AL NP R + +LLAT+NALARL  
Sbjct: 4   KRTAPRDRRHRSGADRRAAPAGDDRIILYGWHPVTEALRNPGRGLHRLLATENALARLAA 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +       P + V P  I  +VG +AVHQGL LE  PL +P  D +    +L+ LD + D
Sbjct: 64  ELGELRIVP-QMVRPGEISALVGPDAVHQGLYLEAEPLRAPAFDTLPPDAVLLALDQITD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A AF+   I+TT R+SP+ + VLAKSASG LEH+P++ + NL +AL  + 
Sbjct: 123 PHNVGAIVRTAAAFNVTAIVTTARHSPAATGVLAKSASGGLEHVPFVTVRNLAEALIDLG 182

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             GF  IGL S++  PL+Q      + ++LGAEGKGLR +T+E    MA L  PG IK+L
Sbjct: 183 ERGFTRIGLDSEAPVPLDQVTPAPPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSL 242

Query: 264 NVSNAAAVALYITQ 277
           NVSNAAA+ LY   
Sbjct: 243 NVSNAAAITLYALA 256


>gi|15676825|ref|NP_273970.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|52783329|sp|Q9JZR3|RLMB_NEIMB RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|7226169|gb|AAF41338.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|319410266|emb|CBY90607.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Neisseria meningitidis WUE
           2594]
 gi|325200383|gb|ADY95838.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           H44/76]
          Length = 250

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|149926252|ref|ZP_01914514.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
 gi|149825070|gb|EDM84282.1| RNA methyltransferase TrmH, group 3 [Limnobacter sp. MED105]
          Length = 244

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 117/243 (48%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            LYG H VSA +      + ++L     K+   +   D        V       ++K  G
Sbjct: 3   ILYGFHAVSARVKTAPASVEEVLVDQHRKDKRMQQFIDKVKAAGVKVSAADSDRLEKAAG 62

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+      L     L   +D    + LL+VLD V DPHN+GA LRSA A     
Sbjct: 63  -HKQHQGVVAFAKELVKSNDLFEIIDTHGKNTLLLVLDGVTDPHNLGACLRSADAAGVHA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  S   + V++K A GA E IP I ++NL   L+++   G   IG + ++   L 
Sbjct: 122 VVLPKDKSVGITPVVSKVACGAAETIPVITVTNLARTLEEIQDAGVWCIGTAGEATDTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNH 279
               N  IA +LGAEG G+R  T+E    +  + M G +++LNVS A++V L+ T  Q  
Sbjct: 182 DADLNGPIAWVLGAEGDGMRRLTREKCDQLVQIPMIGSVESLNVSVASSVCLFETLRQRQ 241

Query: 280 FAK 282
           F+K
Sbjct: 242 FSK 244


>gi|301169579|emb|CBW29180.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae 10810]
          Length = 246

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAMA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +        +G + ++ + +
Sbjct: 124 VIAPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243


>gi|171778431|ref|ZP_02919589.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282832|gb|EDT48256.1| hypothetical protein STRINF_00440 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 249

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +                 +   P +T+  + 
Sbjct: 9   QNDIVYGVHAVTEALQANTGNKLYIQDDLRGKNVDKIKMLATEKKVSISWTPKKTLSDMT 68

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  +      LD++        + L+++LD +NDPHN G+ILR+A A + 
Sbjct: 69  -NGAVHQGFVLRVSEFAYAELDSILEKAVQEENPLILILDELNDPHNFGSILRTADATNV 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   +   P
Sbjct: 128 TGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFGTDMNG-TP 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +     K+ALI+G EGKG+ P  ++    M  + M G +++LN S AAAV +Y    H
Sbjct: 187 SHKWNTAGKLALIIGNEGKGISPNIKKQVDEMITIPMNGHVQSLNASVAAAVLMYEVFRH 246


>gi|238797599|ref|ZP_04641096.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           mollaretii ATCC 43969]
 gi|238718596|gb|EEQ10415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia
           mollaretii ATCC 43969]
          Length = 246

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L+N  ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLDNDPQRFLEVFILKGRDDRRLQPLVAELEAAGLVIQVANRQWLDAQ 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+            + +           L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPALLKSVEMPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVATGVCLFEAVR 240

Query: 279 HFA 281
             +
Sbjct: 241 QRS 243


>gi|187935194|ref|YP_001884456.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B str. Eklund 17B]
 gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B str. Eklund 17B]
          Length = 286

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 123/281 (43%), Gaps = 13/281 (4%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPS 65
           +++ K  + +D +    + N R+  K +     S   S +     + G + V  AL    
Sbjct: 2   RENTKAGNKRDKNRENNKGNKREINKNRVVENNSYDNSFEEREDIIIGRNAVLEALK-AE 60

Query: 66  RKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           R I  L  + + L                 +K V  + +D +    AVHQG+     P  
Sbjct: 61  RTIETLYISNSKLEGSINAIISKAKDKKILIKEVDKRKLDSMC-NNAVHQGVIARVTPYE 119

Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              +  +         +  +++LD V DPHN+G+I+R+A  F   GII  KR S S + +
Sbjct: 120 YSEVSDILELAEKKGENPFIVILDEVEDPHNLGSIIRTAELFGVHGIIIPKRRSASVTTM 179

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + KS+ GA+EH+   R++NL   + ++   G    G    +++   Q       A+I+G 
Sbjct: 180 VYKSSVGAIEHVKVARVTNLNSVIDELKEKGIWVYGTDIRAEEYSYQTDFGGACAIIIGN 239

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           EGKG+   T +    +  + M G I +LN S A  + +Y  
Sbjct: 240 EGKGISKLTLKKCDKLIKIPMVGKINSLNASVAGGIIMYEV 280


>gi|170723830|ref|YP_001751518.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169761833|gb|ACA75149.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           W619]
          Length = 248

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVGK 107
           +YGVH V A L +  +++ Q+  ++     R+     L     V+      + +D  V  
Sbjct: 7   IYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  E +P       +L   L+      L++VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGAT 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S + + V+ K A GA E IP + ++NL   L+K+   G   +G + ++++ +
Sbjct: 125 AVVVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+     + +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQR 244


>gi|257465576|ref|ZP_05629947.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           202]
 gi|257451236|gb|EEV25279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           202]
          Length = 246

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++   K     RL    N        ++ V  QT+D    +
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLGIAIQQVNRQTLDNK-SQ 63

Query: 108 EAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             VHQG+  +  P   L    LD   A ++  LL++LD V DPHN+GA LR+A A   D 
Sbjct: 64  GEVHQGIIAKVVPQKELNEHDLDRILASKSQPLLLILDGVTDPHNLGACLRTADATGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   ++   K A GA E +P IR++NL   ++++        +G + ++   +
Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVWIVGTAGEATSSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  + L+     
Sbjct: 184 YEAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGICLFEIVRQ 242


>gi|325982012|ref|YP_004294414.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
           AL212]
 gi|325531531|gb|ADZ26252.1| RNA methyltransferase, TrmH family, group 3 [Nitrosomonas sp.
           AL212]
          Length = 246

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 108/242 (44%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVP--PQTID 102
           P   F++G H V++ L      I ++         R      L     +  +      + 
Sbjct: 2   PSTRFIFGFHAVTSRLRQNPNSIREIFIDATRTDQRAQELIKLAENKNIHVISCTGSKLT 61

Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + G +  HQG+            +   LD +     L+VLD + DPHN+GA LR A AF
Sbjct: 62  SMSGNDR-HQGVVANIDSSSNDVGIDDILDGLTEPARLLVLDGIQDPHNLGACLRVADAF 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  +   +  + K +SGA + +PYI ++NL   L+++   G    G + D+ 
Sbjct: 121 GVHAVIAPKDRAVGLTPTVYKVSSGAADTVPYISVTNLARTLKQLKEQGIWIFGTAEDAA 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L     +  +A + G+E KGLR  T+E    +  + M G I++LNV+ +A + L+ T 
Sbjct: 181 HDLTHFPISGSVAWVFGSEEKGLRRLTRENCDQLVRIPMQGDIESLNVAVSAGICLFETH 240

Query: 278 NH 279
             
Sbjct: 241 RQ 242


>gi|83747961|ref|ZP_00944992.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
 gi|207723179|ref|YP_002253578.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           MolK2]
 gi|207743429|ref|YP_002259821.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           IPO1609]
 gi|83725379|gb|EAP72526.1| 23S rRNA Gm2251 methyltransferase [Ralstonia solanacearum UW551]
 gi|206588373|emb|CAQ35336.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           MolK2]
 gi|206594826|emb|CAQ61753.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
           2'-o-methyltransferase) protein [Ralstonia solanacearum
           IPO1609]
          Length = 249

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+  +   L     L   LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIDGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 185 QADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|292493502|ref|YP_003528941.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
           halophilus Nc4]
 gi|291582097|gb|ADE16554.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus
           halophilus Nc4]
          Length = 249

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 11/240 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKE 108
           YG+H V AAL  P+ +I  L   ++   R   +     L        V  + +D +V   
Sbjct: 7   YGLHAVRAALEQPATQIISLWLDQSRKDRAIQEITELALEQGLDFYPVNREDLDSLV-PG 65

Query: 109 AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +         L   LD ++   LL++LD V DPHN+GA LR+A A    G
Sbjct: 66  VRHQGVVAHCSAQPTFTEEGLFDLLDNLKAPPLLLILDGVQDPHNLGACLRTAEAAGVHG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A + K ASGA E +P++R++NL   ++K+   G   +G        L 
Sbjct: 126 VIAPKDRAVGLTAAVRKVASGAAERVPFVRVTNLARLMRKLRERGLWLVGTVVKGGGSLY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  + L+LGAE +GLR  T E    +  + M G + +LNVS AA V L+  Q    
Sbjct: 186 NTDLKGPLGLVLGAEDRGLRRLTAEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQRG 245


>gi|261392720|emb|CAX50293.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Neisseria meningitidis 8013]
          Length = 250

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|209964021|ref|YP_002296936.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
           centenum SW]
 gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
           centenum SW]
          Length = 251

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 140/242 (57%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT-----VPPQTIDKI 104
            +YG+H V+AA  NP R+   L  T++ALA LD          ++      +  + +DK+
Sbjct: 10  LIYGLHPVAAAWINPERRCRGLYVTESALAALDGAVQRAAELGLERPDPTFLEKEELDKL 69

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +   AVHQG+AL+TAPL    ++ V          L++VLD V DPHN+GAI+RSA AF 
Sbjct: 70  LPPGAVHQGVALDTAPLPEVAVEDVCIAAESEPQALVIVLDQVTDPHNVGAIMRSAAAFG 129

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I   R++P  + VLAK+ASGA++ +P +R++NL  AL  +   GF T+GL     +
Sbjct: 130 ARAVIVQDRHAPPVTGVLAKTASGAVDAVPLVRVTNLARALDTLKQAGFWTVGLDESGAR 189

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           PL +     + AL+LG+EG+GLR  T E    +A L   G + +LNVSNAAAVALY    
Sbjct: 190 PLHEVDLTGRTALVLGSEGEGLRRLTGERCDEIARLPTGGPVGSLNVSNAAAVALYEVAR 249

Query: 279 HF 280
             
Sbjct: 250 RR 251


>gi|218768017|ref|YP_002342529.1| putative RNA methylase [Neisseria meningitidis Z2491]
 gi|52783328|sp|Q9JUU8|RLMB_NEIMA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|121052025|emb|CAM08334.1| putative RNA methylase [Neisseria meningitidis Z2491]
          Length = 250

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88]
 gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88]
          Length = 245

 Score =  261 bits (668), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 8/240 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIV 105
              + G + V  AL +       L++  N    ++   +L      P+K V  + +D+I 
Sbjct: 3   EDLIIGRNAVVEALESHKTLESILISKGNNKGTINKIISLAKENRIPIKNVDKKKLDEI- 61

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +   HQG+A  T P    +++ +       +  +++LD + DPHN GAI+R+A  F  D
Sbjct: 62  SEGENHQGVAAYTTPYKYYSVEEILESSKGKAPFILILDEIQDPHNFGAIIRTAEVFGVD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR S   + ++ KS+ GA+EH+   +++N+   +  +        G    + + +
Sbjct: 122 GIIIPKRRSVGITPIVYKSSVGAVEHVKIAKVNNINSTIDFLKENNIWIYGADMATDRYI 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             E     IAL++G+EGKG+   T+E    +  + M G I +LN S A  + +Y      
Sbjct: 182 YSENLKGPIALVVGSEGKGISKLTKEKCDILVKIPMSGQINSLNASVAGGIVMYEISRQR 241


>gi|117617585|ref|YP_855245.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117558992|gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 249

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANL--PHPFPVKTVPPQTIDKI 104
              +YG+H VSA L     +  ++ A K     RL             V++V  +T+D  
Sbjct: 3   TELIYGIHAVSALLERTPERFIEVWALKGRDDDRLQPLLAELDALGLKVQSVNRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
             +   HQG+                     L   +    L+VLD V DPHN+GA LRSA
Sbjct: 63  A-EGNNHQGIMARVKEAPKLAEHDLASLLDKLAEQQTQPFLLVLDGVTDPHNLGACLRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  +   + ++ K A GA E +P I+++NL  +L+++   G   +G + 
Sbjct: 122 DAAGVHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARSLRELQERGVWIVGTAG 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q      +AL++GAEGKG+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 182 EADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241

Query: 275 ITQNHF 280
                 
Sbjct: 242 EAVRQR 247


>gi|22124552|ref|NP_667975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis KIM
           10]
 gi|45440391|ref|NP_991930.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51594785|ref|YP_068976.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809893|ref|YP_653809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Antiqua]
 gi|108813450|ref|YP_649217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Nepal516]
 gi|145600840|ref|YP_001164916.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Pestoides F]
 gi|150260575|ref|ZP_01917303.1| putative methylase [Yersinia pestis CA88-4125]
 gi|153949503|ref|YP_001402598.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162419936|ref|YP_001605270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           Angola]
 gi|165926787|ref|ZP_02222619.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936560|ref|ZP_02225128.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011869|ref|ZP_02232767.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213970|ref|ZP_02240005.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400679|ref|ZP_02306188.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419264|ref|ZP_02311017.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423260|ref|ZP_02315013.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467834|ref|ZP_02332538.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis FV-1]
 gi|170026005|ref|YP_001722510.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|186893793|ref|YP_001870905.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927584|ref|YP_002345459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
 gi|229836642|ref|ZP_04456808.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
 gi|229840254|ref|ZP_04460413.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842332|ref|ZP_04462487.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903929|ref|ZP_04519042.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
 gi|270489084|ref|ZP_06206158.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
           D27]
 gi|294502489|ref|YP_003566551.1| putative methylase [Yersinia pestis Z176003]
 gi|52783320|sp|Q8ZIV4|RLMB_YERPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21957351|gb|AAM84226.1|AE013666_6 hypothetical protein y0638 [Yersinia pestis KIM 10]
 gi|45435247|gb|AAS60807.1| putative methylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51588067|emb|CAH19673.1| putative methylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777098|gb|ABG19617.1| methylase [Yersinia pestis Nepal516]
 gi|108781806|gb|ABG15864.1| putative methylase [Yersinia pestis Antiqua]
 gi|115346195|emb|CAL19063.1| putative methylase [Yersinia pestis CO92]
 gi|145212536|gb|ABP41943.1| methylase [Yersinia pestis Pestoides F]
 gi|149289983|gb|EDM40060.1| putative methylase [Yersinia pestis CA88-4125]
 gi|152960998|gb|ABS48459.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162352751|gb|ABX86699.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis
           Angola]
 gi|165915676|gb|EDR34285.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921410|gb|EDR38634.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989228|gb|EDR41529.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204765|gb|EDR49245.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963258|gb|EDR59279.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050047|gb|EDR61455.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057430|gb|EDR67176.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752539|gb|ACA70057.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis YPIII]
 gi|186696819|gb|ACC87448.1| RNA methyltransferase, TrmH family, group 3 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229679699|gb|EEO75802.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Nepal516]
 gi|229690642|gb|EEO82696.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696620|gb|EEO86667.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706326|gb|EEO92334.1| 23S rRNA (Gm2251)-methyltransferase [Yersinia pestis Pestoides A]
 gi|262360520|gb|ACY57241.1| putative methylase [Yersinia pestis D106004]
 gi|262364467|gb|ACY61024.1| putative methylase [Yersinia pestis D182038]
 gi|270337588|gb|EFA48365.1| RNA methyltransferase, TrmH family, group 3 [Yersinia pestis KIM
           D27]
 gi|294352948|gb|ADE63289.1| putative methylase [Yersinia pestis Z176003]
 gi|320013752|gb|ADV97323.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 246

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++  ++   K    R               ++    Q +D  
Sbjct: 2   SEIIYGIHAVKALLERDPQRFLEVFILKGRDDRRLQPLIAELEAAGLVIQVASRQWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V +  VHQG+               P L     +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EGGVHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVR 240

Query: 279 HFA 281
              
Sbjct: 241 QRG 243


>gi|300704400|ref|YP_003746003.1| tRNA guanosine-2'-o-methyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299072064|emb|CBJ43396.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 249

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDAQSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+  +   L     L   LD +  S LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIEGSPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQNLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 185 QADFKGPIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|27364705|ref|NP_760233.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
           CMCP6]
 gi|37681244|ref|NP_935853.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio vulnificus
           YJ016]
 gi|320155098|ref|YP_004187477.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           vulnificus MO6-24/O]
 gi|52783298|sp|Q7MH13|RLMB_VIBVY RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783314|sp|Q8DCT8|RLMB_VIBVU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|27360850|gb|AAO09760.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio
           vulnificus CMCP6]
 gi|37199995|dbj|BAC95824.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|319930410|gb|ADV85274.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           vulnificus MO6-24/O]
          Length = 247

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPV--KTVPPQTIDKI 104
           N F+YG+H V A L+    +  +    K     RL    N      V  + +  +T+D  
Sbjct: 3   NEFIYGIHAVRAVLDKEPERFIEAYVLKGRQDDRLMPILNELQMVGVSLQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+     P   L    LD +     S LL++LD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKPAKQLNENDLDDILAKHASPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQGIWIVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGAVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|255066315|ref|ZP_05318170.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
           29256]
 gi|255049525|gb|EET44989.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sicca ATCC
           29256]
          Length = 249

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|240948309|ref|ZP_04752695.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           NM305]
 gi|240297348|gb|EER47889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus minor
           NM305]
          Length = 246

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++   K     RL    N        ++ V  QT+D    +
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVFVLKGREDKRLIPLLNELQRLGIAIQQVNRQTLDNK-SQ 63

Query: 108 EAVHQGLALETAP---LLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             VHQG+  +  P   L    LD   A +   LL++LD V DPHN+GA LR+A A   D 
Sbjct: 64  GEVHQGIIAKVVPQKELNEHDLDRILASKPQPLLLILDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   ++   K A GA E +P IR++NL   ++++        +G + ++   +
Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNVWIVGTAGEATSSI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 184 YDAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIIRQ 242


>gi|299067280|emb|CBJ38477.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 249

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + +R I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRMIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+  +   L     L   LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      +
Sbjct: 185 RADFKGPIALVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRS 244


>gi|254671350|emb|CBA08779.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha153]
          Length = 250

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADTDRLNAI-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCVLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|260581687|ref|ZP_05849484.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
           influenzae NT127]
 gi|260095280|gb|EEW79171.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Haemophilus
           influenzae NT127]
          Length = 246

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGTVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +        +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243


>gi|68249454|ref|YP_248566.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 86-028NP]
 gi|68057653|gb|AAX87906.1| probable tRNA/rRNA methyltransferase [Haemophilus influenzae
           86-028NP]
          Length = 246

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKRREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +        +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIARQR 243


>gi|307824282|ref|ZP_07654508.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
           tundripaludum SV96]
 gi|307734662|gb|EFO05513.1| RNA methyltransferase, TrmH family, group 3 [Methylobacter
           tundripaludum SV96]
          Length = 248

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA-TKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H+V +AL+   +KI +    ++    RL    D  L      + V  + +D+   +
Sbjct: 6   IYGIHSVQSALDYSPKKIGKAWIDSQRQDKRLTQLIDDLLDLGIEPEKVDRKKLDRFA-E 64

Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+ +E           L   +  +  + L +VLD+V DPHN GA LR+A A    
Sbjct: 65  GNNHQGIVIEVEMPGELSESDLKDAVLTLSGTPLFLVLDNVQDPHNFGACLRTADATGVH 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I TK  +   +  + K ASGA E +P  +++NL+  L+ +   G   +G + ++ +  
Sbjct: 125 GVIITKDNATGITPTVCKVASGAAETVPVYQVTNLSRTLRWLKEQGIWVMGAAGEATQTA 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEGKGLR  T+E    +  L M G +++LN+S A  V LY T    
Sbjct: 185 YQTDFTVPLALVVGAEGKGLRRLTKEQCDILVKLPMRGQVESLNLSVATGVLLYETVRQR 244


>gi|291613895|ref|YP_003524052.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584007|gb|ADE11665.1| RNA methyltransferase, TrmH family, group 3 [Sideroxydans
           lithotrophicus ES-1]
          Length = 247

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 9/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            E+  ++G H V+A +   +  + ++      K+  AR        +   +  V  + +D
Sbjct: 2   AESRIIHGFHAVTARIRQNADSVLEMYVDTQRKDPRARDLLKLAESNGVRIIQVDGKRLD 61

Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + G  + HQG+            L   LD +    LL+VLD V DPHN+GA LRSA AF
Sbjct: 62  GMAG-NSRHQGVVARVDAAQKVQHLDDVLDTLTEPALLLVLDGVQDPHNLGACLRSADAF 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  +   +A + K A GA + +PYI ++NL   L+++       IG+  +++
Sbjct: 121 GVHAVIAPKDRAVGINATVEKVACGAAQTVPYITVTNLARTLRELQERDIWVIGMDGEAE 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L        +A +LGAEG+GLR  T+ET   +  + M G +++LNVS +  V LY  +
Sbjct: 181 TNLYDVQHQGAVAWVLGAEGEGLRRLTRETCDQLVRIPMQGSVESLNVSVSTGVCLYEAR 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|309782307|ref|ZP_07677034.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
           5_7_47FAA]
 gi|308918925|gb|EFP64595.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia sp.
           5_7_47FAA]
          Length = 250

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +       +  I G
Sbjct: 6   LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+  +   L     L   LD +  + LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q       A+++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 185 QADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|325577249|ref|ZP_08147733.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160831|gb|EGC72952.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 246

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L N   ++ ++   K     RL    N        V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILANSPERLIEVFVLKGREDKRLQPLLNELYALGIAVQFVTRQTLDKKSNG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQEAKELNEHDLDELLTRKQNPLLLVLDGVTDPHNLGACLRTADAAGVSA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL   L+ +        +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLARTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGSLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|167855195|ref|ZP_02477965.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           29755]
 gi|167853648|gb|EDS24892.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus parasuis
           29755]
          Length = 244

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 10/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V + L+    ++ ++   K     RL    N        V+ V  Q +D     
Sbjct: 5   IYGIHAVKSFLDVAPERLIEVFVLKGREDKRLTPLLNELQRLGIRVQQVNRQALDNKAQG 64

Query: 108 EAVHQGLAL---ETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     +   L    LD +   + +  L++LD V DPHN+GA LR+A A   D 
Sbjct: 65  E-VHQGIIAKIIQAKELNESDLDQILDRKANPFLLILDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   ++   K A GA E +P IR++NL   ++++       +G + ++ + L 
Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQERNIWIVGTAGEATESLY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 184 QVKLTGSIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVRQ 241


>gi|16272800|ref|NP_439020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae Rd KW20]
 gi|145632229|ref|ZP_01787964.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
 gi|145634717|ref|ZP_01790425.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
 gi|148826495|ref|YP_001291248.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae PittEE]
 gi|229844738|ref|ZP_04464877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|229845912|ref|ZP_04466024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|260579951|ref|ZP_05847781.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae RdAW]
 gi|319897646|ref|YP_004135843.1| 23S rRNA (gm2251)-methyltransferase [Haemophilus influenzae F3031]
 gi|329122866|ref|ZP_08251438.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           aegyptius ATCC 11116]
 gi|1176354|sp|P44906|RLMB_HAEIN RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|1573875|gb|AAC22519.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|144987136|gb|EDJ93666.1| hypothetical protein CGSHi3655_07239 [Haemophilus influenzae 3655]
 gi|145267883|gb|EDK07879.1| hypothetical protein CGSHiAA_03913 [Haemophilus influenzae PittAA]
 gi|148716655|gb|ABQ98865.1| hypothetical protein CGSHiEE_07740 [Haemophilus influenzae PittEE]
 gi|229810916|gb|EEP46633.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|229812452|gb|EEP48142.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|260093235|gb|EEW77168.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae RdAW]
 gi|317433152|emb|CBY81526.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3031]
 gi|327472130|gb|EGF17568.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Haemophilus
           aegyptius ATCC 11116]
          Length = 246

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +        +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|325144276|gb|EGC66581.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240013]
          Length = 250

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +   R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG     +  L  
Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|269961411|ref|ZP_06175775.1| RNA methyltransferase [Vibrio harveyi 1DA3]
 gi|269833788|gb|EEZ87883.1| RNA methyltransferase [Vibrio harveyi 1DA3]
          Length = 247

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+            + +        S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|331007603|ref|ZP_08330749.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC1989]
 gi|330418581|gb|EGG93101.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC1989]
          Length = 251

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 124/249 (49%), Gaps = 16/249 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDK 103
           ++  +YG+H V A ++   ++I  L   K     RL    ++       V+TV  + +D 
Sbjct: 4   DDDIVYGLHAVQALVDGSPQRIQTLWLLKGRNDQRLQSIRSVAEKSRITVRTVAREKLDG 63

Query: 104 IVGKEAVHQGLALET--------APLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILR 152
           +V  E  HQG+               L   L  ++ S     ++VLD V DPHN+GA LR
Sbjct: 64  MV--EGNHQGVIASVVNVTEVYDEDYLKSRLPKMKESGVIPFILVLDGVTDPHNLGACLR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A     +I  K  S S +  + K A GA E +P +R++NL+  L+ + S G   +G 
Sbjct: 122 SAEAAGVQFVIVPKDNSASLTPTVVKVACGAAEVLPLVRVTNLSRTLEWLQSQGVWLVGA 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++++   Q      +A+++GAEGKGLR  T+E   S+  + M G + +LNVS A+ + 
Sbjct: 182 AGEAEQDHYQMNLTGPLAIVMGAEGKGLRRLTRERCDSLIRIPMMGEVSSLNVSVASGIC 241

Query: 273 LYITQNHFA 281
           L+      +
Sbjct: 242 LFEALRQRS 250


>gi|28899580|ref|NP_799185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260361407|ref|ZP_05774469.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus K5030]
 gi|260876679|ref|ZP_05889034.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AN-5034]
 gi|260896628|ref|ZP_05905124.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus Peru-466]
 gi|260900887|ref|ZP_05909282.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ4037]
 gi|52783311|sp|Q87L11|RLMB_VIBPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28807816|dbj|BAC61069.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086301|gb|EFO35996.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus Peru-466]
 gi|308093965|gb|EFO43660.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AN-5034]
 gi|308106500|gb|EFO44040.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus AQ4037]
 gi|308112895|gb|EFO50435.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
           parahaemolyticus K5030]
          Length = 247

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETA---PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+         L    +D +     + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKVAKQLNENDIDDILAQHETPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
 gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
          Length = 249

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 124/246 (50%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  R++++L   +N     A+   +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RELYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V  +  HQG+  + A      LD +             +VLD + DPHN+G+I+R+A 
Sbjct: 62  QMVSGQ--HQGIVAQVAAYEYAELDDLYKRAEEKNEQPFFLVLDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP ++++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVKVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++          +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRTMDGTMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQNHFA 281
                +
Sbjct: 240 IYRKRS 245


>gi|300691792|ref|YP_003752787.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299078852|emb|CBJ51513.1| tRNA guanosine-2'-O-methyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 249

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + +R I ++    N   R   D   A       +     + +  I G
Sbjct: 6   LLIGFHAVTARLRHDARSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADNERLRGIAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+  +   L     L   LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAEALSLALNLDELLDGIEGPPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINATVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q      IAL++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 185 QADFKGAIALVMGAEGEGMRRLTRETCDTLVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|145628238|ref|ZP_01784039.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
           22.1-21]
 gi|145638336|ref|ZP_01793946.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
 gi|144980013|gb|EDJ89672.1| hypothetical protein CGSHi22121_04335 [Haemophilus influenzae
           22.1-21]
 gi|145272665|gb|EDK12572.1| hypothetical protein CGSHiII_06179 [Haemophilus influenzae PittII]
 gi|309751478|gb|ADO81462.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2866]
          Length = 246

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+              LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKEFNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ + H+     +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQHNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|145637023|ref|ZP_01792687.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
 gi|145269881|gb|EDK09820.1| hypothetical protein CGSHiHH_04955 [Haemophilus influenzae PittHH]
          Length = 245

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +        +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|187928166|ref|YP_001898653.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|187725056|gb|ACD26221.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
           12J]
          Length = 250

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +       +  I G
Sbjct: 6   LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+  +   L     L   LD +  + LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q       A+++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 185 QADFKGPTAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|85058322|ref|YP_454024.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sodalis glossinidius
           str. 'morsitans']
 gi|84778842|dbj|BAE73619.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 245

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKI 104
           +  +YG+H V A L    ++   +   K    R               ++ V  Q +D+ 
Sbjct: 2   SEIIYGIHAVQALLERDPQRFLDVYLLKGRDDRRLQPLLQQLENAGIVIQMVSRQWLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+               P L   + + LL+VLD V DPHN+GA LR A A  
Sbjct: 62  A-EGAVHQGIVARVQAGWQYQENDLPALLTQQAAPLLLVLDGVTDPHNLGACLRCADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  +   +A   K ASGA E +P IR++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRAAPLNATAKKVASGAAETVPLIRVTNLARTLRLLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS AA V+L+    
Sbjct: 181 HLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMAGTVSSLNVSVAAGVSLFEAVR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|117919150|ref|YP_868342.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. ANA-3]
 gi|117611482|gb|ABK46936.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. ANA-3]
          Length = 246

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL         F   ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
               + A HQG+         L    LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESAQHQGIVARVKAAKILGEHDLDELLGKTDLPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|121634735|ref|YP_974980.1| putative RNA methylase [Neisseria meningitidis FAM18]
 gi|120866441|emb|CAM10187.1| putative RNA methylase [Neisseria meningitidis FAM18]
 gi|254672232|emb|CBA05193.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha275]
 gi|325130080|gb|EGC52867.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           OX99.30304]
 gi|325132185|gb|EGC54881.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M6190]
 gi|325134100|gb|EGC56753.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M13399]
 gi|325136132|gb|EGC58741.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M0579]
 gi|325138117|gb|EGC60690.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           ES14902]
 gi|325142210|gb|EGC64631.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           961-5945]
 gi|325198165|gb|ADY93621.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           G2136]
 gi|325206236|gb|ADZ01689.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M04-240196]
 gi|325207967|gb|ADZ03419.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           NZ-05/33]
          Length = 250

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +   R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K ASGA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|89075975|ref|ZP_01162347.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
 gi|89048324|gb|EAR53903.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
          Length = 244

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  ++G+H V A L +   +  ++   K     RL             ++    + +D  
Sbjct: 3   NDMIFGIHAVKAVLASDPVRFIEVFVLKGREDDRLLPLVTELQSLGITIQEAGRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V K A HQG+     P        LD +   + S LL++LD V DPHN+GA LR+A A  
Sbjct: 63  V-KGASHQGIVARVRPGKQYNENDLDDLLVGKESPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 AVAVIVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|241662769|ref|YP_002981129.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|240864796|gb|ACS62457.1| RNA methyltransferase, TrmH family, group 3 [Ralstonia pickettii
           12D]
          Length = 250

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            L G H V+A L + ++ I ++    N   R   D   A       +       +  I G
Sbjct: 6   LLIGFHAVTARLRHGAKSIDEIYFEANRRDRRMQDFLKAAEAAGVRLIPADADRLRGIAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+  +   L     L   LD +  + LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TDR-HQGVVAKAESLSLALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   IG + ++++ L 
Sbjct: 125 VIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQERGVWVIGTADEAEQDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q      IA+++GAEG+G+R  T+ET  ++  + M G +++LNVS A+ V L+      A
Sbjct: 185 QADFKGPIAIVMGAEGEGMRRLTRETCDALVSIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|306832717|ref|ZP_07465854.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304425173|gb|EFM28302.1| RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 249

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 128/248 (51%), Gaps = 10/248 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K+R  ++  N  +YGVH V+ +L  N   K++     +        +        +  +P
Sbjct: 2   KNREFNET-NDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKNLAAEKKVSISWMP 60

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151
            +T++ +    AVHQG  L  +      LD      A   + L+++LD +NDPHN G+IL
Sbjct: 61  KKTLNDMT-NGAVHQGFVLRVSEFAYAELDMILDKAAQEENPLILILDGLNDPHNFGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G
Sbjct: 120 RTADATNVTGVIIPKHRAVGVTPVVAKTSTGAIEHVPIARVTNLSQTLDKLKEQGFWVFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +   P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV
Sbjct: 180 TDMNG-TPSHKWNTSGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAV 238

Query: 272 ALYITQNH 279
            +Y    H
Sbjct: 239 LMYEVFRH 246


>gi|255527269|ref|ZP_05394150.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|296187248|ref|ZP_06855644.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|255509054|gb|EET85413.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
 gi|296048119|gb|EFG87557.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           carboxidivorans P7]
          Length = 276

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 16/276 (5%)

Query: 21  AKLRRNHRDY--KKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
              ++N +D   ++++  N  SR+TS+       + G + V   L +  R + Q+L    
Sbjct: 2   KDTKKNFKDNSNRRIEKDNNFSRNTSEKSFREDLIEGRNAVIEVLKS-ERTVEQILVANG 60

Query: 77  ALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129
            ++    L           +K V  + +D++    A HQG+  +  P     +D +    
Sbjct: 61  DVSGSINLILALAKEKKVVIKQVDRKKLDQLSQTGA-HQGVIAQITPYKYCDVDDIISYA 119

Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                   +++LD + DPHN G+I+R+A      GII  KR +   +  + K++ GA+EH
Sbjct: 120 EEKGEKPFIVILDEIEDPHNFGSIIRTAETCGVHGIIIPKRRNVGLTPAVYKASVGAIEH 179

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +   +I+N+ +A+ K+   G    G   + +           +ALI+G+EGKG+   T+ 
Sbjct: 180 MKIAKITNINNAIDKLKEQGIWVYGADMNGENYCYDVDFRGAVALIIGSEGKGILKLTKN 239

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +  + M G I +LN S A  + +Y       K
Sbjct: 240 KCDVLVKIPMVGNISSLNASVAGGILMYEILKQRFK 275


>gi|261363630|ref|ZP_05976513.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
           25996]
 gi|288568160|gb|EFC89720.1| RNA methyltransferase, TrmH family, group 3 [Neisseria mucosa ATCC
           25996]
          Length = 249

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
 gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
          Length = 249

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N     A+   +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VYR 242


>gi|90581367|ref|ZP_01237163.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
 gi|90437477|gb|EAS62672.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
          Length = 244

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  ++G+H V A L +   +  ++   K     RL             ++    + +D  
Sbjct: 3   NDMIFGIHAVKAVLASDPVRFIEVFVLKGREDDRLLPLVTELQSLGITIQEAGRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V K A HQG+     P        LD +   + + LL++LD V DPHN+GA LR+A A  
Sbjct: 63  V-KGASHQGIVARVRPGKQYNENDLDDLLVGKENPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 AVAVIVPKDRSAQLNATASKVACGAAEIMPLVRVTNLARTMRALQDKGVWIVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|298368373|ref|ZP_06979691.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282376|gb|EFI23863.1| RNA methyltransferase, TrmH family, group 3 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 249

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSITELYIQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|312884705|ref|ZP_07744406.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367618|gb|EFP95169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 246

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLRPILNDLQVCGVSIQLMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQG+     P   L    LD +     + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-KGANHQGIMARVKPAKLLNEHDLDNIIAQHTAPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P IR++NL   ++ +   G   +G + ++ +
Sbjct: 122 VAAVIVPKDKSANINATVSKVACGAAETVPLIRVTNLARTMRALQEQGVWFVGTAGEATQ 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGALAIVMGAEGDGMRRLTRETCDDLIKIPMAGTVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|56461042|ref|YP_156323.1| rRNA methylase [Idiomarina loihiensis L2TR]
 gi|56180052|gb|AAV82774.1| RRNA methylase, SpoU family [Idiomarina loihiensis L2TR]
          Length = 248

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 11/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++G+H V A L N   ++ +L  +K       R   +         + VP Q ++K   +
Sbjct: 7   VFGLHAVRAILKNHPDRLVELYVSKERQDDSVRDIVNQCHATGVRPQWVPKQALEKRA-E 65

Query: 108 EAVHQGLALET-APL------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+     +P       L   L+  + + L ++LD V DPHN+GA LR+A A    
Sbjct: 66  GGNHQGVVATVQSPPTLTEHDLPKLLEQSQQAGLFLILDGVTDPHNLGACLRTADAAGVT 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   +  + K ASGA E++P + ++NL  AL+ +   G    G + ++ + +
Sbjct: 126 GVIVPKDKSAQITPTVRKVASGAAENVPLVVVTNLARALRDLQELGVWAYGTAGEATQSV 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +AL++GAEGKG+R  T+ET   +  + + G + +LNVS A+ V L+      
Sbjct: 186 YDVDYRGPVALVMGAEGKGMRRLTRETCDDLVSIPLSGSVSSLNVSVASGVCLFEVVRQR 245

Query: 281 A 281
            
Sbjct: 246 N 246


>gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 249

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N     A+   +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VYR 242


>gi|309973649|gb|ADO96850.1| 23S rRNA mG2251 methyltransferase [Haemophilus influenzae R2846]
          Length = 245

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +        +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRNLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 249

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N     A+   +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEERNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VYR 242


>gi|158319524|ref|YP_001512031.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158139723|gb|ABW18035.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           oremlandii OhILAs]
          Length = 250

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL +  R+I ++L    T+                P++ V  Q ++++   
Sbjct: 6   IAGRNPVMEALKSG-REIDKILIAKGTEGGSLIKIIGKAKDRGIPIQYVERQKLNEMSSS 64

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + VHQG+    A      ++ +  +         L++LD + DPHN+G+++R+A A   D
Sbjct: 65  D-VHQGIIATVAAYEYCEVEDILENAKSKGRDPFLLILDEIMDPHNLGSMMRTADAVGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR S   ++ +AKS++GA+E++P  ++SN+   + K+   G    G      K  
Sbjct: 124 GIIIPKRRSVGLTSTVAKSSAGAIEYVPVAKVSNIAQTIDKIKDMGIWVAGADMSGSKEH 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +AL++G EG+G+    +E    +  L M G + +LN S AAAV +Y      
Sbjct: 184 YNMDLKGPLALVIGNEGEGISRLIKEKCDFLIKLPMVGQVSSLNASVAAAVLMYEVFRQR 243

Query: 281 A 281
           +
Sbjct: 244 S 244


>gi|24375422|ref|NP_719465.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella oneidensis
           MR-1]
 gi|52783315|sp|Q8EAG8|RLMB_SHEON RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|24350263|gb|AAN56909.1|AE015825_8 RNA methyltransferase, TrmH family, group 3 [Shewanella oneidensis
           MR-1]
          Length = 246

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL         F   ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
           +   +   HQG+         L    LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  EKA-ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|288904447|ref|YP_003429668.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           UCN34]
 gi|306830480|ref|ZP_07463650.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325977443|ref|YP_004287159.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288731172|emb|CBI12720.1| putative RNA methyltransferase, TrmH family [Streptococcus
           gallolyticus UCN34]
 gi|304427505|gb|EFM30607.1| RNA methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325177371|emb|CBZ47415.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 249

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 10/248 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K+R  ++  N  +YGVH V+ +L  N   K++     +        +        +   P
Sbjct: 2   KNREFNET-NDIVYGVHAVTESLTANTGNKLYIQDDLRGKNVDKIKNLAAEKKVSISWTP 60

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            +T+  +    AVHQG  L  +      LD +        + L+++LD +NDPHN G+IL
Sbjct: 61  KKTLSDMT-NGAVHQGFVLRVSEFAYAELDTILDKAAQEENPLILILDGLNDPHNFGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G
Sbjct: 120 RTADATNVTGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEQGFWVFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +   P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV
Sbjct: 180 TDMNG-TPSHKWNTSGKLALIIGNEGKGISQNIKKQVDEMITIPMNGHVQSLNASVAAAV 238

Query: 272 ALYITQNH 279
            +Y    H
Sbjct: 239 LMYEVFRH 246


>gi|238757527|ref|ZP_04618712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
           ATCC 35236]
 gi|238704289|gb|EEP96821.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Yersinia aldovae
           ATCC 35236]
          Length = 246

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKI 104
           +  +YG+H++ A L+N  ++  ++   K    R      +        ++    + +D  
Sbjct: 2   SEIIYGIHSIKALLDNDPQRFLEVFILKGRDDRRLQSLIVELEATGLVIQVASRKWLDSQ 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V ++  HQG+               P L     +  L+VLD V DPHN+GA LRSA A  
Sbjct: 62  V-EDGAHQGIVARVREGRQYQENDLPALLESVETPFLLVLDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  S   +A+  K ASGA E++P I+++NL   L+ +       +G + ++  
Sbjct: 121 VHAVIVPRDRSAQLNAIAKKVASGAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADH 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 181 TLYQSKMTGPMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEVVR 240

Query: 279 HFA 281
             A
Sbjct: 241 QRA 243


>gi|254283118|ref|ZP_04958086.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR51-B]
 gi|219679321|gb|EED35670.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR51-B]
          Length = 252

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 14/243 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++G+H V +AL +    + +++  K       R            ++  P   +D++V  
Sbjct: 5   IFGLHAVESALKHRPEALLRVMLQKGRDDKRMRELETLARNQGVTIERRPRTELDRLV-- 62

Query: 108 EAVHQGLALETAPLLS-PTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +  HQG+  E       P LD           ++ LL+VLD V DPHN+GA LRSA A  
Sbjct: 63  DGRHQGVVAEIEQGADGPPLDEAGLMQRVAETSTPLLLVLDGVTDPHNLGACLRSADAAG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +  + K A GA E +P++R++NL   L  + + G   +G + D+++
Sbjct: 123 VTAVIVPKNNSADLTPAVRKVACGAAEAVPFVRVTNLVRTLAALQAEGVWVVGTTGDAEQ 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L  +     IAL++GAEG+G+R  TQE    + +L M G + +LNVS A  V L+    
Sbjct: 183 SLYAQDFAGPIALVMGAEGQGMRRLTQEQCDFLVYLPMAGEVSSLNVSVATGVCLFEAVR 242

Query: 279 HFA 281
             +
Sbjct: 243 QRS 245


>gi|113971595|ref|YP_735388.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-4]
 gi|113886279|gb|ABI40331.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-4]
          Length = 246

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL         F   ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
               +   HQG+         L    LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|71282118|ref|YP_271263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Colwellia
           psychrerythraea 34H]
 gi|71147858|gb|AAZ28331.1| RNA methyltransferase, TrmH family, group 3 [Colwellia
           psychrerythraea 34H]
          Length = 251

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 14/247 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPV--KTVPPQTIDKI 104
              ++G+H V+A +N    +  ++   K     R+    NL   + +  +    + +D+ 
Sbjct: 5   EELVFGIHAVNALINAAPERFIEIWLLKGREDDRIMPIINLSRKYGIGTQLASRKALDEK 64

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVLDHVNDPHNIGAILRSA 154
              E  HQG+     P  S T + + +          +   ++LD V DPHN+GA LR+A
Sbjct: 65  SEGEQ-HQGVIARVRPGKSYTENDIDDIILAAEKKSIAPFFLILDGVTDPHNLGACLRNA 123

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     II  K  +   +  + K A GA+E +P ++++NL+  ++++   G   +G + 
Sbjct: 124 DAAGVQAIIVPKDNAAQITPTVRKVAVGAVESVPLVQVTNLSRTMKQLQKQGVWIVGTAG 183

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   L     +  +AL++GAEGKG+R  T+E    +  L M G + +LNVS A  + L+
Sbjct: 184 ETDTCLYDVKLSGPMALVMGAEGKGMRRLTRENCDQLVKLPMAGTVSSLNVSVATGICLF 243

Query: 275 ITQNHFA 281
                 +
Sbjct: 244 EMVRQRS 250


>gi|323495502|ref|ZP_08100576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
           DSM 21326]
 gi|323319383|gb|EGA72320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sinaloensis
           DSM 21326]
          Length = 245

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAFVLKGRQDDRLMPILNELQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P   L    LD +     S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIMARVKPAKQLNENDLDDILAKHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSANITATVSKVACGAAEAVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|145629932|ref|ZP_01785714.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
           R3021]
 gi|144984213|gb|EDJ91636.1| hypothetical protein CGSHi22421_07773 [Haemophilus influenzae
           R3021]
          Length = 246

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILSNKQNPLLLVLDGVTDPHNLGACLRTADAAGAVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +        +G + ++ + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEIVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|197334845|ref|YP_002157109.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
 gi|197316335|gb|ACH65782.1| RNA methyltransferase, TrmH family, group 3 [Vibrio fischeri MJ11]
          Length = 247

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKI 104
           N +++G+H   A L     +  ++   K     RL    N      F ++ +P +T+D  
Sbjct: 3   NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLGFKIQELPRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQG+     P   L    LD +    ++ LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-KGANHQGIIARVTPAKQLNEHDLDDIVSQTDNPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S S +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|254449207|ref|ZP_05062656.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           HTCC5015]
 gi|198261184|gb|EDY85480.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           HTCC5015]
          Length = 264

 Score =  259 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 89/262 (33%), Positives = 128/262 (48%), Gaps = 14/262 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R  K+  S +++   + Q    FL+G+H V A +     ++FQL   K A  RL     L
Sbjct: 3   RRGKQRSSGSKRGTKSPQ----FLFGLHAVEAFIQRRPEEVFQLYWQKGADQRLGKLQAL 58

Query: 88  PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVL 138
                 P + V  Q +D  V   A HQG+  +           L   LD V N  L++VL
Sbjct: 59  ATQLGLPTQYVERQQLDDWVD-GARHQGVIAQVRSSELWREADLEGILDGVENVPLVLVL 117

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DPHN+GA LRSA     D +I  K  S   +AV  K A GA E  P+I+++NL   
Sbjct: 118 DGVTDPHNLGACLRSANGAGVDVVIAPKDKSAGLTAVSRKVACGAAEETPFIQVTNLART 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+ +   G   +GL+    + L +   +  +AL++GAEG GLR  T+E+   +  + M G
Sbjct: 178 LKGLAERGLWIVGLADGEDRSLYEGRLDGPMALVMGAEGDGLRRLTRESCDEIVAIPMGG 237

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            + +LNVS AA V LY      
Sbjct: 238 SVSSLNVSVAAGVCLYEVVRQR 259


>gi|254804813|ref|YP_003083034.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668355|emb|CBA05407.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 250

 Score =  259 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +   R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|313201452|ref|YP_004040110.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440768|gb|ADQ84874.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
           MP688]
          Length = 249

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 10/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVK--TVPPQTIDK 103
           ++  L+G H V + L      + ++L  K+   AR+    NL     V+   V    +D 
Sbjct: 3   DSRILFGFHAVLSRLRQHGASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDG 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G    HQG+         P  D        +      +VLD V DPHN+GA LR A A
Sbjct: 63  MAGANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADA 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  +   +A + K A GA E IP+I ++NL   L+++   G   +G ++D+
Sbjct: 123 MGVHAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADA 182

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L     +  +AL+LGAEG GLR  T ET  ++  + M G +++LNVS A+ + LY  
Sbjct: 183 PGNLFTTKLDGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEA 242

Query: 277 QNHFA 281
           +    
Sbjct: 243 RRQRN 247


>gi|312109242|ref|YP_003987558.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y4.1MC1]
 gi|311214343|gb|ADP72947.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y4.1MC1]
          Length = 245

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 13/240 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105
            F+ G + V  AL +  R+I ++   ++               +   V+ VP + +D++V
Sbjct: 2   DFIIGKNPVIEALKS-KRQINKIWIAESVQRHSIQPIIQLAKQNGVLVQYVPKKKLDQMV 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E  HQG+  + A      +D +             ++LD + DPHN+G+I+R+A A  
Sbjct: 61  --EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAVG 118

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR S   +A +AK+++GA+E+IP  R++NL   + ++   G   +G  + +K+
Sbjct: 119 AHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKERGVWIVGTDAKAKE 178

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                     +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y    
Sbjct: 179 DYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYR 238


>gi|295401939|ref|ZP_06811902.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976069|gb|EFG51684.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 245

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 13/240 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105
            F+ G + V  AL +  R+I ++   ++               +   V+ VP + +D++V
Sbjct: 2   DFIIGKNPVIEALKS-KRQINKIWIAESVQRHSVQPIIQLAKQNGVLVQYVPKKKLDQMV 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E  HQG+  + A      +D +             ++LD + DPHN+G+I+R+A A  
Sbjct: 61  --EGTHQGIVAQVAAYRYYEIDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAVG 118

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR S   +A +AK+++GA+E+IP  R++NL   + ++   G   +G  + +K+
Sbjct: 119 AHGIIIPKRRSVGLTATVAKASTGAIEYIPVARVTNLARTMDELKERGVWIVGTDAKAKE 178

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                     +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y    
Sbjct: 179 DYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIRLPMRGHVTSLNASVAASLLMYEVYR 238


>gi|327472394|gb|EGF17825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           sanguinis SK408]
          Length = 242

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +A+       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTTGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
 gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
          Length = 249

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 118/242 (48%), Gaps = 12/242 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDK 103
           +  F+ G + +  AL +  R + ++   + +     +   +        V+ VP + +D+
Sbjct: 2   DREFITGKNPIIEALRSG-RPMNKIWIGEGSQKGQMQKVLELAKEQGVLVQHVPKRKLDQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++G E  HQG+    A      +D +             +VLD V DPHN+G+ILR+A A
Sbjct: 61  LIGHE-NHQGVVASVAAYEYAEMDDLFQRAAEKGEEPFFIVLDEVEDPHNLGSILRTADA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR +   +  +AK+++GA+E++P +R++NL   ++ +   G   IG  +  
Sbjct: 120 AGVHGVIIPKRRAVGLTQTVAKASTGAIEYVPVVRVTNLARTMEDLKKRGLWFIGTDAKG 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +       +  IAL++G+EGKGL    +E    +  + M G + +LN S A ++ +Y  
Sbjct: 180 SEDYRGAAYDMPIALVIGSEGKGLSRLVREKCDFLVRIPMVGQVTSLNASVATSLLMYEA 239

Query: 277 QN 278
             
Sbjct: 240 YR 241


>gi|254497333|ref|ZP_05110138.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254353445|gb|EET12175.1| tRNA/rRNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 250

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 126/241 (52%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVG 106
           F+YGVH VSA L NP R   +L  +++ + +   D     +     ++ +  Q +++   
Sbjct: 5   FVYGVHAVSALLANPHRTTKKLFVSQDRVDKRLQDLVDKAVQARIGIEKLSTQQMNQRFA 64

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+    + L       L   L++ ++  L+++LD + DPHN+GA LR+A A   
Sbjct: 65  -EFNHQGIVASASALPDYNESHLRALLESSKSPGLILILDGITDPHNLGACLRTADATGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  K  S S + V++K A GA E +P +R++NL  ++  +   G    G + +++  
Sbjct: 124 DFVVIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSMDLLKEQGVWIYGAAGEAEHS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      IAL++GAEG+GLR  T+E    +  L M G + +LNVS A  V+LY     
Sbjct: 184 LYQVDCRGTIALVMGAEGEGLRRLTREHCDGLFSLPMSGSVDSLNVSVATGVSLYEVLRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           5521]
 gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           5521]
 gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 277

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 18/276 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           K     +    K R+N    K       KS    +     + G + V  AL    R I  
Sbjct: 4   KPKKTSNLTVKKDRKNEPLKKN------KSITCQEEREDIVIGRNAVMEALK-GDRTIEA 56

Query: 71  LLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +  + N L                 +K V  + +D +   E  HQG+  +  P     + 
Sbjct: 57  IYVSNNKLEGSINAIMGMAKDQKILIKEVDKRKLDSMCDGE-THQGVIAKVTPFKYSEVS 115

Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +         +  +++LD V DPHN+G+I R+A  F   GII  KR S S +A + KS+
Sbjct: 116 DIFELAEQKGEAPFIVILDEVEDPHNLGSIARTAELFGVHGIIIPKRRSASVTATVYKSS 175

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA+EH+   +++N+   ++++   G    G    +++   +   +   AL++G EG+G+
Sbjct: 176 VGAIEHVKVAKVNNINSTIEELKEKGVWIYGADIRAEEYSHEVDYSGPCALVIGNEGRGM 235

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              T +    +  + M G I +LN S A  + +Y  
Sbjct: 236 SKLTVQKCDKLIKIPMVGKINSLNASVAGGIMMYEV 271


>gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046]
          Length = 287

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 17/282 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL---FLYGVHTVSAALNNPSR 66
           EK    +     K R    D  K     Q+ +  S  E L    + G + V  AL    R
Sbjct: 3   EKRQPNRKPRDFKGRDKKADTFKTHEKKQQEKPQSAQEELSGEMIAGKNPVLEALR-AGR 61

Query: 67  KIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
           +I +L   +       +   D        V+ VP Q +DK+      HQG+    A    
Sbjct: 62  EINKLWIAEGVKKTGVQELMDLAKEQGVLVQFVPKQKVDKLA---ENHQGIVASVAAYDY 118

Query: 124 PTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             LD +             ++LD + DPHN+G+I+R+A A    GII  KR +   +AV+
Sbjct: 119 AELDDLFAAAKAKSEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTAVV 178

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AK+++GA+EH+P +R++NL   + ++   G    G  +       +      +ALI+G+E
Sbjct: 179 AKASTGAIEHVPVVRVTNLAQTVDELKDRGVWIAGTDAKGSADYRKMDATLPLALIIGSE 238

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GKG+    ++    + HL M G + +LN S AAA+ +Y    
Sbjct: 239 GKGMSRLLKDKCDFLYHLPMVGHVTSLNASVAAALLMYEVYR 280


>gi|219853507|ref|YP_002470629.1| hypothetical protein CKR_0164 [Clostridium kluyveri NBRC 12016]
 gi|219567231|dbj|BAH05215.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 256

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVP 97
           +   Q     + G ++V  ALN+ +  I Q+      ++      +         VK V 
Sbjct: 2   KSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGSINTIFAIAKEKHIVVKKVD 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
            + +D+I  +  VHQG+  +  P     L+ +         S  +++LD + DPHN GAI
Sbjct: 62  KRKLDRI-SQTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDEIQDPHNFGAI 120

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A      GII  KR +   +  + KS++GA+E++   +++NL   ++K+        
Sbjct: 121 IRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIEKLKKENIWIY 180

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G     +        N  IALI+G+EGKG+   T++    +  + M G I +LN S AA 
Sbjct: 181 GADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNISSLNASVAAG 240

Query: 271 VALYITQNHFAK 282
           + +Y       K
Sbjct: 241 MLMYEILKQKIK 252


>gi|322513916|ref|ZP_08066993.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
           ureae ATCC 25976]
 gi|322120251|gb|EFX92204.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Actinobacillus
           ureae ATCC 25976]
          Length = 247

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        ++ V  QT+D     
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLSPLLNELQRLGISIQQVNRQTLDNKAQG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+  +  P   L    LD +   + +  L++LD V DPHN+GA LR+A     D 
Sbjct: 65  E-VHQGIIAKVVPQKELNEHDLDVILSQKQNPFLLILDGVTDPHNLGACLRTADVAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   ++   K A GA E +P IR++NL   ++++        +G + ++   +
Sbjct: 124 VIVPKDKSAQLTSTARKVACGAAETVPLIRVTNLARTMRELQEQHNIWIVGTAGEATSGI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            Q      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 184 YQAKLTGAIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242


>gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
           7061]
 gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
           7061]
          Length = 249

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 123/243 (50%), Gaps = 13/243 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  R++++L   +N     A+   +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RELYKLWMAENTVKGQAQQVIELAKKQNITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGIVAQVAAYEYAELDDLYQIAEQRNEQPFFLILDEIEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  +++NL+ AL +M   G    G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVAKVTNLSRALDEMKERGIWVAGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K+   Q      +AL++G+EGKG+    +E    +  L M G + +LN S AA++ +Y 
Sbjct: 180 AKQDYRQFDGTMPLALVIGSEGKGIGRLIKEKCDFLIKLPMAGKVTSLNASVAASLLMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VYR 242


>gi|289648619|ref|ZP_06479962.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 252

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +    AR+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDARVQTLVALAGENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 185 YQQDLTGPT-IIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 243

Query: 281 A 281
           +
Sbjct: 244 S 244


>gi|114046193|ref|YP_736743.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7]
 gi|113887635|gb|ABI41686.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp. MR-7]
          Length = 246

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPF--PVKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL         F   ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKSFGTSIQVTSRKVLD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+         L    LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +AV++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGVTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           metalliredigens QYMF]
          Length = 248

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL    R+I +LL  K A     +            V+ V  Q +D+I   
Sbjct: 6   IEGRNPVLEALK-AGREIDKLLIAKGAEEGSMKKIIGMAKDQNIIVQYVERQKLDQISES 64

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+  + A      ++ +         S  +++LD + DPHN+G+I+R+A A   D
Sbjct: 65  HA-HQGVIAQVAAYEYSDVETILENAQKKGKSPFILILDEIMDPHNLGSIIRTADAVGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR +   +AV+AK+++GA+E++P  ++SN++  + K+   G    G     K+  
Sbjct: 124 GIIIPKRRAVGLTAVVAKTSAGAIEYVPVAKVSNISQTIDKLKEKGVWVAGADMKGKQLH 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +AL++G EG G+    +E    +  L M G + +LN S AAAV +Y      
Sbjct: 184 FEADFKGALALVIGGEGSGISRLVKEKCDFLVKLPMAGQVSSLNASVAAAVLMYEAYRQR 243


>gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           furnissii CIP 102972]
 gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           furnissii CIP 102972]
 gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 246

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 14/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQTID 102
           N F+YG+H V+A L     +  +    K       L  L+  A L     ++ +  + +D
Sbjct: 3   NEFIYGIHAVNAVLERDPARFVEAYVLKGRQDDRLLPVLNELARL--GISIQEMHRKALD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVA 156
               + A HQG+  +  P      + + +        LL+VLD V DPHN+GA LR+A A
Sbjct: 61  DKA-QGANHQGVIAKVKPAKQLNENDLDDIIAQHPQPLLLVLDGVTDPHNLGACLRNADA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++
Sbjct: 120 AGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGIWFVGTAGEA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+  
Sbjct: 180 THDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEA 239

Query: 277 QNHFA 281
               +
Sbjct: 240 VRQRS 244


>gi|332685573|ref|YP_004455347.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
           plutonius ATCC 35311]
 gi|332369582|dbj|BAK20538.1| TrmH family tRNA/rRNA methyltransferase YacO [Melissococcus
           plutonius ATCC 35311]
          Length = 279

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 14/276 (5%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHT----SQPENLFLYGVHTVSAALNNPS-RKIF 69
           +K+      +  HR  +K  + N++ +      +  E+ F++G H V  A+      K+F
Sbjct: 1   MKNKQSKISQNKHRYKEKNTAKNEQKKMKKTGITTEEDNFVFGYHAVVEAIQQGRGNKLF 60

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
               +K                PVK VP   ++ +   + VHQG+ L        +L+ +
Sbjct: 61  LQEDSKGEKIDKLKQLAQERSLPVKWVPKTKLE-MWSNQGVHQGMVLAITAYEYLSLNEL 119

Query: 130 RN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                    +   ++LD + DPHN G+I R+A A   DGII  K  S   + V+ K+++G
Sbjct: 120 LEQVKVKTKTPFFLILDGLEDPHNFGSIFRTADATGVDGIIIPKHRSVGITPVVTKTSTG 179

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A+E+IP  R++NL+  + K+    F   G                 +ALI+G EGKG+  
Sbjct: 180 AVEYIPVARVTNLSQIIAKLKEQQFWIFGTDMTG-IDYRNWDATGALALIIGNEGKGISA 238

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++ A  +  + M G +++LN   AA + +Y    
Sbjct: 239 GLKKEADELITIPMSGHVQSLNAGVAAGLLMYEAYR 274


>gi|308048246|ref|YP_003911812.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630436|gb|ADN74738.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 245

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPV--KTVPPQTIDK 103
           ++  ++G+H V A +     ++ +L   K     RL   A L   F V  +    + +D 
Sbjct: 2   KHEMVFGLHAVEALMQRQPERVMELWVMKGRDDERLTRIAELAQQFGVRPQLAARKVLDD 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAF 157
              +   HQG+     P        +        +  L+VLD V DPHN+GA LRSA A 
Sbjct: 62  KA-ESTQHQGVVARCKPEPVKGEHELDQLLDGVDTPFLLVLDGVTDPHNLGACLRSADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  S S   ++ K A GA E IP  +++NL   L+ +   G   +G + ++ 
Sbjct: 121 GVHGVIVPKDRSASLGPIVRKVAVGAAESIPLFQVTNLARTLRSLQERGIWIVGAAGEAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + Q      +A+ +GAEGKGLR  T+E    +  + M G + +LNVS A  + L+   
Sbjct: 181 HTVYQSKLTGPLAIAMGAEGKGLRRLTREHCDDLISIPMAGAVSSLNVSVATGICLFEAV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|92118023|ref|YP_577752.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
 gi|91800917|gb|ABE63292.1| RNA methyltransferase TrmH, group 3 [Nitrobacter hamburgensis X14]
          Length = 283

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 121/265 (45%), Positives = 161/265 (60%), Gaps = 3/265 (1%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DSH  K     R     +   +  R T       LYG HTV+AAL NP R+I +LL T+N
Sbjct: 19  DSHARKA--GDRKRPPGRGSARNGRETGADGPAILYGWHTVTAALANPRRRIRKLLLTEN 76

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A  RL  + N+      + V P  ID+ +G +AVHQGL  E  PL SP +D +    +++
Sbjct: 77  AARRLANE-NIETRLTPEIVRPSAIDQRLGPDAVHQGLLAEADPLPSPDIDTLAQEGIVL 135

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+GAI+RSA AF+   I+TT R+SP  + VLAKSASGALE +P + + NL 
Sbjct: 136 VLDQITDPHNVGAIMRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPLVLVQNLA 195

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            AL +++  GF T+GL S   + L        +AL+LGAEGKGLR  T+ET  ++A L M
Sbjct: 196 RALTELNDRGFMTVGLDSAGGEDLAAIQLRQPLALVLGAEGKGLRQLTRETCNAVARLDM 255

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
           PG IK+LNVSNAA +ALYI  +   
Sbjct: 256 PGDIKSLNVSNAAVLALYIGASRLG 280


>gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|586908|sp|Q06753|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO
 gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis]
 gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 249

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 13/243 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N     A+   +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +  +AK+++GA+EHIP  R++NL   L++M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++       N  +AL++G+EGKG+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VYR 242


>gi|319946269|ref|ZP_08020509.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           australis ATCC 700641]
 gi|319747651|gb|EFV99904.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           australis ATCC 700641]
          Length = 242

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 125/241 (51%), Gaps = 9/241 (3%)

Query: 46  PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALIANTGNKLYIQDDLRGKNVEKIKDLAADKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      L+ +      +++ LL++LD + DPHN+G+ILR+A A  
Sbjct: 62  T-EGAVHQGFVLRVSEFAYTDLNEILTQVANQDNPLLLILDGLTDPHNLGSILRTADATQ 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   +   
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTSGKLALIIGNEGKGISTNIKKQVDEMITIPMQGHVQSLNASVAAAILMYEVFR 239

Query: 279 H 279
           +
Sbjct: 240 N 240


>gi|87120578|ref|ZP_01076472.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
           MED121]
 gi|86164221|gb|EAQ65492.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp.
           MED121]
          Length = 270

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 13/253 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVP 97
           +  +  +  ++YG+H V   L     +I ++   +    +      +    +      V 
Sbjct: 13  KKITMSDLEWVYGIHAVENLLLQQPERIKEIRFQEGRDDKKIKRLLNLCRENGIKANVVA 72

Query: 98  PQTIDKI---VGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            + ID++     +  VHQG+A             L   ++ +    L+++LD + DPHN+
Sbjct: 73  RREIDQLFKASQERVVHQGVAAFAKMTRSQDEADLYKLVENLDEPPLIIILDGITDPHNL 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA LRSA A     ++  K  S   +A ++K A GA E +P   ++NL   ++K+   G 
Sbjct: 133 GACLRSADAAGAHALVMPKDKSAPLNATVSKVACGAAESMPVYAVTNLARTMKKLQDKGV 192

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G + ++ + + ++      A+++GAEG G+R  T+E    +  L M G++ +LNVS 
Sbjct: 193 WIFGTAGEASQTIYEQDLTIPSAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSV 252

Query: 268 AAAVALYITQNHF 280
           A  + LY      
Sbjct: 253 ATGICLYEAVRQR 265


>gi|239825674|ref|YP_002948298.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
 gi|239805967|gb|ACS23032.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp. WCH70]
          Length = 245

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 13/240 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105
            F+ G + V  AL +  R+I ++   +       +        +   V+ VP + +D++V
Sbjct: 2   DFIIGKNPVIEALKS-EREINKIWIAEGVQRNSIQPIIQLAKQNGVLVQYVPKKKLDQMV 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E  HQG+  + A      +D +             ++LD + DPHN+G+I+R+A A  
Sbjct: 61  --EGAHQGVVAQVAAYRYYEVDDLFARASEKNEPPFFLILDELEDPHNLGSIMRTADAVG 118

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR S   +A +AK+++GA+E++P  R++NL   + ++   G   +G  + +K 
Sbjct: 119 AHGIIIPKRRSVGLTATVAKASTGAIEYVPVARVTNLARTIDELKERGVWIVGTDAKAKD 178

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                     +AL++G+EGKG+     E    + HL M G + +LN S AA++ +Y    
Sbjct: 179 DYRSLDGTMPLALVIGSEGKGIGRLILEKCDFLIHLPMRGHVTSLNASVAASLLMYEVYR 238


>gi|317164111|gb|ADV07652.1| RNA methylase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 255

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 12  IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 70

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 71  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 130

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 131 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 191 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 248


>gi|254362632|ref|ZP_04978721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           haemolytica PHL213]
 gi|153094246|gb|EDN75117.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           haemolytica PHL213]
          Length = 247

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L+N   ++ ++L  K     RL    N        ++ V  QT+D    +
Sbjct: 5   IYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQRLGVAIQQVNRQTLDNK-SQ 63

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             VHQG+     P   L    L+A+   + + LL++LD V DPHN+GA LR+A A   D 
Sbjct: 64  GEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   +    K A GA E +P IR++NL   ++ +        +G + +++  +
Sbjct: 124 VIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVWIVGTAGEAESGI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 184 YEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242


>gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           Y412MC10]
          Length = 256

 Score =  258 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            E   + G H+V+ AL +  R I ++   +NA   L              ++ V  + +D
Sbjct: 9   QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 67

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + AP     +D +            L++LD + DPHN+G+ILR+A 
Sbjct: 68  QMV-PGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 126

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  KR S   +A ++K+++GA+E++P  R++NL   + ++   G   +G   D
Sbjct: 127 CTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 186

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + L   E+ +  +A+++G E KG+    +E    +  L M G I +LN S AA V +Y
Sbjct: 187 AVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 246

Query: 275 ITQNHF 280
                 
Sbjct: 247 EVLRRR 252


>gi|262281995|ref|ZP_06059764.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
 gi|262262449|gb|EEY81146.1| RNA methyltransferase [Streptococcus sp. 2_1_36FAA]
          Length = 243

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTTGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|238021416|ref|ZP_04601842.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
 gi|237868396|gb|EEP69402.1| hypothetical protein GCWU000324_01316 [Kingella oralis ATCC 51147]
          Length = 250

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + I +L   +N   A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNARLWQNPKSIVELYVLENKNDARTREVLEKAAAEKVRVHFADMNRLNTIA- 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +R    L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G   D +  L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMDGEADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + +A ++G EG G+R  T+E   ++  + M G ++++N+S +A + +  T+   
Sbjct: 185 HYDIPENVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVMAETRRQR 243


>gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573]
 gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603]
 gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC341]
 gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           VM223]
 gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           MB-451]
 gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC586]
 gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603]
 gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573]
 gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC341]
 gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           MB-451]
 gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
           VM223]
 gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           RC586]
          Length = 246

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N  +     ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P   L    LD +       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|138893766|ref|YP_001124219.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196251123|ref|ZP_03149802.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           G11MC16]
 gi|134265279|gb|ABO65474.1| 23S rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196209364|gb|EDY04144.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           G11MC16]
          Length = 246

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 17/242 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDK 103
            ++ G + V  AL +  R I ++   + A        LDW         V+ VP + +D+
Sbjct: 3   EYIIGRNPVIEALKSG-RDINKIWIAEGAHRHAVEPVLDWAKR--RGVIVQYVPKRKLDQ 59

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   E  HQG+  + A      +D +         +   +VLD + DPHN+GAI+R+A A
Sbjct: 60  MA--EGAHQGVIAQVAAYRYYEVDDLFARAAERGEAPFFLVLDELEDPHNLGAIMRTADA 117

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR S   +  +AK+++GA+EHIP  R++NL   + ++   G    G  + +
Sbjct: 118 VGAHGVIIPKRRSVGLTPTVAKASTGAIEHIPVARVTNLARTIDELKERGVWVAGTDAAA 177

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K           +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y  
Sbjct: 178 KDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEV 237

Query: 277 QN 278
             
Sbjct: 238 YR 239


>gi|153952842|ref|YP_001393607.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|146345723|gb|EDK32259.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
          Length = 280

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 115/252 (45%), Gaps = 11/252 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVP 97
           +   Q     + G ++V  ALN+ +  I Q+      ++      +         VK V 
Sbjct: 26  KSEPQFREDLIEGRNSVMEALNSNNVTIEQIFVLDGNMSGSINTIFAIAKEKHIVVKKVD 85

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
            + +D+I  +  VHQG+  +  P     L+ +         S  +++LD + DPHN GAI
Sbjct: 86  KRKLDRI-SQTGVHQGVIAKVIPYKYCELEDILDYASERGESPFIIILDEIQDPHNFGAI 144

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A      GII  KR +   +  + KS++GA+E++   +++NL   ++K+        
Sbjct: 145 IRTAEVSGVHGIIIPKRRNVGITPTVYKSSAGAVEYMKICKVTNLNTIIEKLKKENIWIY 204

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G     +        N  IALI+G+EGKG+   T++    +  + M G I +LN S AA 
Sbjct: 205 GADMTGENYCFDVDFNSSIALIIGSEGKGISKLTKQKCDKLVKIPMMGNISSLNASVAAG 264

Query: 271 VALYITQNHFAK 282
           + +Y       K
Sbjct: 265 MLMYEILKQKIK 276


>gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           CT 5369-93]
 gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           CT 5369-93]
          Length = 247

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N  +     ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P   L    LD +       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGVIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|322374580|ref|ZP_08049094.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C300]
 gi|321280080|gb|EFX57119.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C300]
          Length = 253

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDQGFWTFGTDMNG-TPC 192

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252


>gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 247

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N  +     ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P   L    LD +       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEHPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|304414079|ref|ZP_07395447.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
           insecticola LSR1]
 gi|304283293|gb|EFL91689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus Regiella
           insecticola LSR1]
          Length = 251

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 14/247 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     ++ ++   K+      R    A       V+    Q +D  
Sbjct: 2   DEMIYGIHAVKALLEKEPHRLLEIFLQKDRHDRRLRSLISAIESEGLQVQMAKRQWLDNQ 61

Query: 105 VGKEAVHQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           V    VHQG+  +              L   L A +   LL++LD V DPHN+GA LRSA
Sbjct: 62  V-NHEVHQGIVAKIRQGRQYQENDLLQLVEKLLADKKDPLLLILDGVTDPHNLGACLRSA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K +S   +A + K ASGA E +P I ++NL   L+ +       +G + 
Sbjct: 121 DAAGVHAVIVPKDHSAPLNATVKKVASGAAETVPLIVVTNLARTLRLLKEHNIWIVGTAG 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D+++ L Q      +AL++G+EG+G+R  T+E    +  + + G + +LNVS A  V L+
Sbjct: 181 DAEQNLYQWKIQQSMALVMGSEGQGMRRLTREHCDELISIPLAGSVSSLNVSVATGVCLF 240

Query: 275 ITQNHFA 281
                  
Sbjct: 241 EVTRQRN 247


>gi|332359265|gb|EGJ37086.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 242

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       +A+       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEALLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385]
          Length = 247

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N  +     ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P   L    LD +       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQYEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
 gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18]
          Length = 249

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDK 103
           +   +YG++    AL   SRKIF+L     +A  RL+    L      PV+      +++
Sbjct: 3   KEEIIYGLNPAMEALR-GSRKIFELFVAGTSADKRLEKLLKLAAERKVPVRQREKGDLNR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + G E  HQG+AL+  P     LD V        + L++VLD V DPHN+GA++RSA   
Sbjct: 62  LCGTE-HHQGVALKVEPFPYADLDDVLEGLQGEGNGLILVLDSVQDPHNLGALIRSAACA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             + ++  K  +   +AV+ K+++GA E +   +++N++ AL+ +   GF   G    +K
Sbjct: 121 GANAVVIPKDRAAGVTAVVEKASAGATETVAVAQVTNISQALETLKKAGFWIYGADGSAK 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q+     +AL++G EG+G+RP  ++    +  + + G + +LN S A  + L+   
Sbjct: 181 HTLYQQDFTGPVALVIGGEGEGIRPLVRKGCDEVVSIPLQGGVNSLNASVAGGIFLFEVV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|74316627|ref|YP_314367.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
 gi|74056122|gb|AAZ96562.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
          Length = 254

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 123/247 (49%), Gaps = 8/247 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQ 99
           + +P    +YG H V A L +    + ++      ++A AR            +  V   
Sbjct: 2   SEKPAERLIYGFHAVLARLRHDPAGVLEIYLDLTRRDARARDLVHQARDSGVKLAQVEAD 61

Query: 100 TIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            + ++VGK A HQG+     P+     L   L+++    LL++LD V DPHN+GAILRSA
Sbjct: 62  RLGRLVGKAAKHQGVVARVKPVALTHSLDEVLESIEGPPLLVILDGVTDPHNLGAILRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF    +I  K  +   +A + K ASGA + +PY+ ++NL   ++++       I    
Sbjct: 122 DAFGAHAVIAPKDNAVGINATVEKVASGAADTVPYLMVTNLARTIEELKEHDIWVIAADM 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D ++PL        +A +LGAEG G+R   ++    +A + + G +++LNVS +AA+ LY
Sbjct: 182 DGEQPLSGIDVRSGVAWVLGAEGAGIRRLVKQRCDQVARIPIGGTVESLNVSVSAALCLY 241

Query: 275 ITQNHFA 281
            T     
Sbjct: 242 ETARQRG 248


>gi|49474315|ref|YP_032357.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239819|emb|CAF26210.1| tRNA /rRNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 272

 Score =  258 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 125/270 (46%), Positives = 170/270 (62%), Gaps = 7/270 (2%)

Query: 16  KDSHYAKLRRNHRDYK----KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           K+ HYA L+   RD K    +  +  ++     +   + LYG HTV+AAL NP R    L
Sbjct: 3   KNFHYAHLQDRSRDKKSFPFRPAAHLKQKAVPLRQGTIRLYGFHTVNAALKNPKRVFGHL 62

Query: 72  LATKNALARLDW-DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
             T NAL RL+   ++LP    +    P+ +D +VG +AVHQG+ LET  L    L  + 
Sbjct: 63  YITLNALKRLNIPKSDLPCSVTLY--SPKQLDSLVGSDAVHQGIILETESLKPCQLSELT 120

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N+ L++V+D + DPHN+GAI+RSA+AF    +ITT R+SP ES VLAK+ASGALE I YI
Sbjct: 121 NTDLVIVMDQITDPHNVGAIMRSAIAFKAGALITTCRHSPQESGVLAKAASGALEIINYI 180

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + NL + LQ++H  GF + GL S+    LE  +   KIAL+LGAEGKGLR KT+ET  +
Sbjct: 181 TVRNLAETLQELHKAGFISFGLDSEGDHSLETALTGRKIALVLGAEGKGLRKKTRETVCA 240

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  L MPG IK+LNVSNAA +ALY+   + 
Sbjct: 241 LTRLDMPGNIKSLNVSNAATIALYVAHKYL 270


>gi|148981039|ref|ZP_01816259.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145961015|gb|EDK26338.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 246

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K                    ++ +  + +D  
Sbjct: 3   NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDERLLPLLNQLQQFGVSIQQMGRKPLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+  +  P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-QGANHQGIIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|15903354|ref|NP_358904.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus pneumoniae
           R6]
 gi|307068107|ref|YP_003877073.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
 gi|15458955|gb|AAL00115.1| tRNA (guanosine-2'-O-)-methyltransferase, TrmH family
           [Streptococcus pneumoniae R6]
 gi|306409644|gb|ADM85071.1| hypothetical protein SPAP_1485 [Streptococcus pneumoniae AP200]
          Length = 253

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252


>gi|331266684|ref|YP_004326314.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
           Uo5]
 gi|326683356|emb|CBZ00974.1| TrmH family RNA methyltransferase group 3 [Streptococcus oralis
           Uo5]
          Length = 260

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y   +N 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241

Query: 280 FAK 282
             K
Sbjct: 242 LIK 244


>gi|322376908|ref|ZP_08051401.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           M334]
 gi|321282715|gb|EFX59722.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           M334]
          Length = 253

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ +I  
Sbjct: 15  NDIVYGVHAVTEALRANTGNKLYLQEDLRGKNLEKVKELATEKKVSISWTSKKSLSEIT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYSELDHILAKTHQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V++K+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 134 GVIIPKHRAVGVTPVVSKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252


>gi|239998822|ref|ZP_04718746.1| RNA methylase [Neisseria gonorrhoeae 35/02]
 gi|240014263|ref|ZP_04721176.1| RNA methylase [Neisseria gonorrhoeae DGI18]
 gi|240016699|ref|ZP_04723239.1| RNA methylase [Neisseria gonorrhoeae FA6140]
 gi|240121826|ref|ZP_04734788.1| RNA methylase [Neisseria gonorrhoeae PID24-1]
 gi|240125597|ref|ZP_04738483.1| RNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268594665|ref|ZP_06128832.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae 35/02]
 gi|268684185|ref|ZP_06151047.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae SK-92-679]
 gi|268548054|gb|EEZ43472.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae 35/02]
 gi|268624469|gb|EEZ56869.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           gonorrhoeae SK-92-679]
          Length = 250

 Score =  258 bits (659), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|262275145|ref|ZP_06052956.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
           hollisae CIP 101886]
 gi|262221708|gb|EEY73022.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Grimontia
           hollisae CIP 101886]
          Length = 245

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104
           N  +YG+H V A L++   +  ++   K       L     L      ++ +  + +D  
Sbjct: 3   NEMIYGIHAVKAVLDSDPSRFIEVFVLKGRQDERVLPVLNELSRLGVTLQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQGL     P        LDA+   + + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-KGASHQGLIARVKPGRQYNENDLDAILDGKENPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A   K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VCAVIVPKDKSAQLNATARKVAVGAAEVVPLVRVTNLARTMRALQERGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DVYDAKLTGPLAIVMGAEGDGMRRLTRETCDDLISIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|118443866|ref|YP_877180.1| RNA methyltransferase [Clostridium novyi NT]
 gi|118134322|gb|ABK61366.1| RNA methyltransferase, TrmH family, group 3 [Clostridium novyi NT]
          Length = 265

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 111/248 (44%), Gaps = 10/248 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           R   +     + G + V  AL +     + ++A  N    ++    +       +K V  
Sbjct: 16  REEKEEREDLIEGRNAVIEALRSDRTIEYVMVAKGNVSGSINKVLGIAKDKGIIIKEVDR 75

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
           + +D +    A HQG+     P     ++ +            ++VLD + DPHN+G+I+
Sbjct: 76  KKLDSMSITGA-HQGVMAIVTPFKYSQIEDIFNYAKEKGEEPFILVLDEIEDPHNLGSIM 134

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      GI+  KR +   +  + K+++GA E++   +++N+  A+ ++   G    G
Sbjct: 135 RTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAIDEIKERGIWVYG 194

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D +    Q      +AL++G+EGKG+   T++    +  + M G I +LN S AA +
Sbjct: 195 ADMDGENYCFQTNFKGAVALVIGSEGKGISKLTKQKCDVLIKIPMVGKITSLNASVAAGI 254

Query: 272 ALYITQNH 279
            +Y     
Sbjct: 255 MMYEVLKQ 262


>gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395]
 gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TMA 21]
 gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TM 11079-80]
 gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           bv. albensis VL426]
 gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           12129(1)]
 gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC27]
 gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           12129(1)]
 gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           bv. albensis VL426]
 gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TM 11079-80]
 gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           TMA 21]
 gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC27]
 gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
           LMA3894-4]
          Length = 247

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N  +     ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P   L    LD +       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|168187716|ref|ZP_02622351.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           C str. Eklund]
 gi|169294429|gb|EDS76562.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           C str. Eklund]
          Length = 263

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 120/260 (46%), Gaps = 12/260 (4%)

Query: 31  KKMQSFNQKS--RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           K++++ N+++  R   +     + G + V  AL +     + ++A  N    ++    + 
Sbjct: 2   KELKNRNKRNFNREEKEEREDLIEGRNAVIEALRSDRTIEYVMVAKGNMTGSINKVLGIA 61

Query: 89  H--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139
                 +K V  + +D +    + HQG+     P     ++ +            +++LD
Sbjct: 62  KDKGIIIKEVDRKKLDSMSITGS-HQGVMAIVTPYKYSEVEDIFNYAKEKGEEPFILILD 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+G+I+R+A      GI+  KR +   +  + K+++GA E++   +++N+  A+
Sbjct: 121 EIEDPHNLGSIMRTAEICGVHGIVIPKRRNVGVTPTVYKTSAGAAEYVKVAKVANINRAI 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++   G    G   D +    Q      +AL++G+EG+G+   T++    +  + M G 
Sbjct: 181 DEIKERGTWVYGADMDGENYCFQTNFKGAVALVIGSEGRGISKLTKQKCDVLVKIPMIGK 240

Query: 260 IKALNVSNAAAVALYITQNH 279
           I +LN S AA + +Y     
Sbjct: 241 ITSLNASVAAGIMMYEVLKQ 260


>gi|91791876|ref|YP_561527.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           denitrificans OS217]
 gi|91713878|gb|ABE53804.1| RNA methyltransferase TrmH, group 3 [Shewanella denitrificans
           OS217]
          Length = 246

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 10/246 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPV--KTVPPQTID 102
            +  F+YG+H + + L +   +I +L   +     RL         F    +    +T+D
Sbjct: 2   KKQDFIYGIHAIESLLTHSPERILELWVLQGRDDDRLAPLLKAAQDFGCTAQRATKKTLD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
           +     + HQG+         L    LDA+ +S     L++LD V DPHN+GA LR+A A
Sbjct: 62  EKADS-SQHQGVVARVQAAKVLAENELDALLDSTEVPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMRHLQDRGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E    +  + M G + +LNVS A  V L+  
Sbjct: 181 DGALYQAELTGPLAIAMGAEDKGLRRLSREACDKLVSIPMAGSVSSLNVSVATGVCLFEA 240

Query: 277 QNHFAK 282
                K
Sbjct: 241 VRQRIK 246


>gi|237821018|ref|ZP_04596863.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CCRI 1974M2]
          Length = 251

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y   +N 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241

Query: 280 FAK 282
             K
Sbjct: 242 LIK 244


>gi|253999430|ref|YP_003051493.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986109|gb|ACT50966.1| RNA methyltransferase, TrmH family, group 3 [Methylovorus sp.
           SIP3-4]
          Length = 249

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 116/245 (47%), Gaps = 10/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVK--TVPPQTIDK 103
           ++  L+G H V + L   +  + ++L  K+   AR+    NL     V+   V    +D 
Sbjct: 3   DSRILFGFHAVLSRLRQHAASVQEILIDKDRVDARMKDLINLAEGASVRLMQVERSRLDG 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G    HQG+         P  D        +      +VLD V DPHN+GA LR A A
Sbjct: 63  MAGANGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLVLDGVEDPHNLGACLRVADA 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  +   +A + K A GA E IP+I ++NL   L+++   G   +G ++D+
Sbjct: 123 MGVHAVIAPKDRAAGLNATVRKVACGAAETIPFIAVTNLARTLRELQEAGVFVVGAAADA 182

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L        +AL+LGAEG GLR  T ET  ++  + M G +++LNVS A+ + LY  
Sbjct: 183 PGNLFTTKLAGPLALVLGAEGAGLRRLTAETCDTLVSIPMFGSVESLNVSVASGICLYEA 242

Query: 277 QNHFA 281
           +    
Sbjct: 243 RRQRN 247


>gi|293390726|ref|ZP_06635060.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951260|gb|EFE01379.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 245

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 11/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A + +   ++ ++   K     RL    N        V+ +  QT+DK    
Sbjct: 5   IYGIHAVKAFVTHYPERLIEVWVLKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A   + 
Sbjct: 65  E-VHQGIIARVHSLPELNEHDLDRLLEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   ++   K A GA E++P IR++NL   L+++        +G + ++ + L
Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++G+EG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGALALVMGSEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243

Query: 281 AK 282
            K
Sbjct: 244 LK 245


>gi|152995437|ref|YP_001340272.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150836361|gb|ABR70337.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas sp. MWYL1]
          Length = 255

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 13/246 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIV 105
            ++YG+H V  ALN    +I ++   +    +           +      V  + +D++ 
Sbjct: 5   EWIYGIHAVENALNQQPERIKEVRFQEGRDDKKTQRLMQLCKANKVRHSVVARRDLDQLF 64

Query: 106 G---KEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                  VHQG+   TA         L   +  +  + L+++LD V DPHN+GA LRSA 
Sbjct: 65  TANKDRVVHQGVVAYTAMNKAGNEADLHSLVAGLEETPLIIILDGVTDPHNLGACLRSAD 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S   +A ++K A GA E IP   ++NL   ++K+   G    G + +
Sbjct: 125 AAGAHAVVMPKDNSAPLNATVSKVACGAAESIPVYAVTNLARTMKKLQDQGVWIFGTAGE 184

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + + ++      A+++GAEG G+R  T+E    +  L M G++ +LNVS A  V LY 
Sbjct: 185 ATQTIYEQDLTIPTAIVMGAEGDGMRRLTREQCDYLVKLPMAGVVSSLNVSVATGVCLYE 244

Query: 276 TQNHFA 281
                A
Sbjct: 245 VVRQRA 250


>gi|224475680|ref|YP_002633286.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420287|emb|CAL27101.1| putative rRNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 249

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 4   EDSVIVGRHAVKEAITTGHPINKILIQDGVKKQQLEEILKHAKNQKIVVQTVPKSKLDHL 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              EA HQG+A   AP     LD +            L++LD + DPHN+G+ILR+A A 
Sbjct: 64  A--EAPHQGVAALVAPYEYADLDKLLAQLKDKDGLPTLVILDGLEDPHNLGSILRTADAA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA++H+P +R++NL+  + ++   G+   G ++D+ 
Sbjct: 122 GVDGVIIPKRRSVALTQTVAKASAGAIQHVPVVRVTNLSQTMDQLKDEGYWIAGTAADNA 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               Q   +  +A+++G EG G+    +E       + M G I +LN S AA++ +Y   
Sbjct: 182 TDYRQMAADMPLAIVIGNEGHGMSRLVKEKCDFYIKIPMVGHINSLNASVAASLMMYEIY 241

Query: 278 N 278
            
Sbjct: 242 R 242


>gi|294671054|ref|ZP_06735909.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307162|gb|EFE48405.1| hypothetical protein NEIELOOT_02762 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 249

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+  L    + I +L   +   +A  R   +        V       ++ I  
Sbjct: 6   LIYGFHAVNTRLWQNPKSITELYVQEGKNDARTRDVLEKAANENVRVHFADADRLNAI-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L 
Sbjct: 125 VIAPKDKNAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                D  A ++G EG+G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 185 HCDLPDSAAWVMGNEGEGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|84393177|ref|ZP_00991941.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|84376229|gb|EAP93113.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
          Length = 246

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K                    ++ +  + +D+ 
Sbjct: 3   NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDEK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL  +  P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-QGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMSGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 249

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 123/243 (50%), Gaps = 13/243 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N     A+   +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQFVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V  E  HQG+  + A      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   +A +AK+++GA+EHIP ++++NL   L +M   G   +G  + 
Sbjct: 120 AVGAHGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++          +AL++G+EG+G+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VYR 242


>gi|226939564|ref|YP_002794637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
           hongkongensis HLHK9]
 gi|226714490|gb|ACO73628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Laribacter
           hongkongensis HLHK9]
          Length = 252

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 9/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVG 106
            ++G H V+A L    + + ++  T+    R   +A          V  +  + +D + G
Sbjct: 6   LIHGFHAVNARLFQSPKSLIEIYITRGREDRRMQEALAKAADEGIRVIPLDNERLDAMTG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+A           +   LD +     L++LD + DPHN+GA LR A A     
Sbjct: 66  -HARHQGIAAVIDASHRIVNVDDVLDTLTTPPFLLILDGITDPHNLGACLRVADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  S   +A ++K A GA E +PYI+++NL   L+ +   G    G   D +  L 
Sbjct: 125 VLAPKDRSAGLNATVSKVACGAAETVPYIQVTNLARTLRDLKDRGIWIAGTDMDGQSDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + +A ++G+EG+G+R  T+E    +  + M G +++LNVS A  + L  T+  
Sbjct: 185 HFEAPESLAWVMGSEGEGMRRLTREHCDLLVSIPMFGTVESLNVSVATGMVLAETRRQ 242


>gi|92113015|ref|YP_572943.1| RNA methyltransferase TrmH, group 3 [Chromohalobacter salexigens
           DSM 3043]
 gi|91796105|gb|ABE58244.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Chromohalobacter
           salexigens DSM 3043]
          Length = 261

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 128/260 (49%), Gaps = 14/260 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPF 91
           M+  + ++R  +      +YGVH V A      +   +L   +  A ARL+    L    
Sbjct: 1   MKGKSSRTRVATPEGLDAVYGVHAVRALFE-RGQPPRELWIQEGRAEARLEALVALARQA 59

Query: 92  PVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------RNSQLLMVLDH 140
            VK   V  +T+D +  + AVHQG+     PL + + +A+          +  LL++LD 
Sbjct: 60  GVKCAGVARETLDGVA-RGAVHQGVIAFAPPLQAESEEALWFRLGAWQQSSPPLLLILDG 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DPHN GA LRSA A    G+I  K  +   +A + K A GA +  P  +++NL  A+ 
Sbjct: 119 VTDPHNFGACLRSADAAGAHGVIVPKDKAAPLNATVRKVACGAADVTPVYQVTNLARAMG 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++ + G   +G + +S + L        +A+++GAEGKG+R  T++    +A L M G +
Sbjct: 179 RLKTHGVWIVGTAGESAQCLYDIDLAGPLAVVMGAEGKGMRRLTRDACDLLAKLPMAGSV 238

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LNVS A  V L+      
Sbjct: 239 SSLNVSVATGVCLFEAVRQR 258


>gi|302876553|ref|YP_003845186.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulovorans 743B]
 gi|307687225|ref|ZP_07629671.1| RNA methyltransferase [Clostridium cellulovorans 743B]
 gi|302579410|gb|ADL53422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulovorans 743B]
          Length = 309

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/285 (23%), Positives = 120/285 (42%), Gaps = 14/285 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           + E I    D      R   R  K  ++   +S+   +     + G + V  AL + S  
Sbjct: 29  QKENIKGKVDRKLEVRRNEERKPKDFETVKFESQVVRE---DIIEGRNAVIEALKSSSTT 85

Query: 68  IFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
           I Q+L  K        +           VK V  + +D++  +  VHQG+     P    
Sbjct: 86  IEQILVAKGDTTGSINVVLAEAREKRLVVKEVDRKKLDEM-SQTGVHQGVIAIVTPYKYC 144

Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            ++ +            +++LD + DPHN+GAILR+A      G++  KR +   +  + 
Sbjct: 145 EVEDILEYAQKKGEDPFIIILDEIEDPHNLGAILRTAEVCGVHGVVIPKRRNVGITPTVY 204

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA++++   ++ N+   +  +   G    G   D K   +        ALI+G+EG
Sbjct: 205 KTSAGAVQYMKVAKVPNINSVIDSLKKKGIWIYGADMDGKVYCQDANFRGAAALIIGSEG 264

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +G+   T+E    +  + M G I +LN S A  + +Y       K
Sbjct: 265 RGISKLTKEKCDLLVKIPMVGQITSLNASVAGGILMYEILTQRMK 309


>gi|182684414|ref|YP_001836161.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
 gi|182629748|gb|ACB90696.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
          Length = 253

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 134 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252


>gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus
           LGP32]
 gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio
           splendidus LGP32]
          Length = 246

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K                    ++ +  + +D+ 
Sbjct: 3   NEFIYGIHAVKAVLEKDPARFIEAYVLKGRQDDRLLPLLNQLQQFGVSIQQMGRKPLDEK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL  +  P           + A     LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-QGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|312867923|ref|ZP_07728127.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parasanguinis F0405]
 gi|311096327|gb|EFQ54567.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parasanguinis F0405]
          Length = 242

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL  N   K++     +                 +   P +T+ ++
Sbjct: 2   ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  A      L A+        + LL++LD + DPHN+G+I+R+A A +
Sbjct: 62  T-EGAVHQGFVLRVAAFAYTDLAAILKQTAKEENPLLLILDGLTDPHNLGSIIRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V++K+++GA+EHIP  R++NL+  L K+   GF   G   +   
Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  Q     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|94989283|ref|YP_597384.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94993172|ref|YP_601271.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94542791|gb|ABF32840.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94546680|gb|ABF36727.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 257

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 19  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D +        + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 79  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ S GF   G   +   P 
Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNG-TPS 196

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 197 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256


>gi|261867104|ref|YP_003255026.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412436|gb|ACX81807.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 245

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 11/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A + +   ++ ++ A K     RL    N        V+ +  QT+DK    
Sbjct: 5   IYGIHAVKAFVTHYPERLIEVWALKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   +N+ LL+VLD V DPHN+GA LR+A A   + 
Sbjct: 65  E-VHQGIIARVHSLPELNEHDLDRLLEQQNTPLLLVLDGVTDPHNLGACLRTADAAGVNA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   ++   K A GA E++P IR++NL   L+++        +G + ++ + L
Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243

Query: 281 AK 282
            K
Sbjct: 244 LK 245


>gi|297538456|ref|YP_003674225.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297257803|gb|ADI29648.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera sp. 301]
          Length = 251

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L+G H V + L      + ++L  ++   AR+     +     V+T  V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHGASVQEILIDRDRMDARMKDLLKMAEAAGVRTMEVERSRLDGMAG 65

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+         P  D        +      ++LD V DPHN+GA LR A A   
Sbjct: 66  MNGRHQGVIARVVDTPIPYKDIHDILESDLTEPPFFLILDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E +P+I ++NL   ++++   G   IG + D+   
Sbjct: 126 HAVIAPKDRAVGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVIGTTMDAPST 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  IA++LGAEG G+R  T ET  ++  + M G +++LNVS A+ + LY  +  
Sbjct: 186 LINTKLDGPIAIVLGAEGDGIRRLTAETCDALMTIPMYGSVESLNVSVASGICLYEARRQ 245

Query: 280 FA 281
            +
Sbjct: 246 RS 247


>gi|257871416|ref|ZP_05651069.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257805580|gb|EEV34402.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 275

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 122/267 (45%), Gaps = 11/267 (4%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENL----FLYGVHTVSAALNNPS-RKIFQLLA 73
              K R+  R        + +     +   L    F++G H V  AL      K+F    
Sbjct: 2   REKKQRKPSRQNTVKNKQHTRKNFREETTELIDENFVFGYHAVIEALKEGRGNKLFMAED 61

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129
            +        +A      PVK VP Q +D++   + VHQ + L   P    +LD +    
Sbjct: 62  ARGEKIDGLKEAARAQSVPVKWVPKQKLDQM-SNQGVHQSVILAITPYEYLSLDELLAQT 120

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     ++LD++ DPHN G+ILR+A A   DGII  K  +   + V+ K+++GA+EHIP 
Sbjct: 121 KEQSFYLILDNLEDPHNFGSILRTADASGVDGIIIPKHRAVGITPVVVKTSTGAVEHIPI 180

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R++NL+ A+Q++   GF   G                   LI+G EG+G+    ++   
Sbjct: 181 ARVTNLSQAIQQLKQAGFWIFGTDMKG-TDYRLWNAQGAAGLIIGNEGRGMSEGLKKDVD 239

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
            M  + M G +++LN S AA + +Y  
Sbjct: 240 EMLTIPMTGHVQSLNASVAAGLLMYQA 266


>gi|71904302|ref|YP_281105.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94991229|ref|YP_599329.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94995142|ref|YP_603240.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|71803397|gb|AAX72750.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94544737|gb|ABF34785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94548650|gb|ABF38696.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 257

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 19  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D +        + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 79  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +   P 
Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG-TPS 196

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 197 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256


>gi|254492112|ref|ZP_05105287.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
           thiooxidans DMS010]
 gi|224462664|gb|EEF78938.1| RNA methyltransferase, TrmH family, group 3 [Methylophaga
           thiooxydans DMS010]
          Length = 246

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 13/244 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLDWDANLPH--PFPVKTVPPQTIDKIV 105
             ++G+H V AAL+ P  +I ++  A      R+D            V      T+DKI 
Sbjct: 4   DVIFGLHAVQAALDVPVSRIKEIWLAADRQDQRVDALLKAAEQQGVVVHKAERDTLDKIA 63

Query: 106 GKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG A    PL S         ++++    LL++LD V DPHN+GA LR+A A  
Sbjct: 64  -PNVQHQGCAARCKPLESLDEKGLMTLVESLNEPALLLILDGVQDPHNLGACLRTAEAAG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  +   +A   K +SGA E +P+ +++NL+  ++++   G   +G S DS+ 
Sbjct: 123 AHAVIAPKDRASGLTATAVKISSGAAERVPFAQVTNLSRLMRELQDAGVWLVGTSGDSEL 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--T 276
            L Q      +A++LGAEGKG+R  T++    + ++ M G  ++LNVS AA V LY    
Sbjct: 183 SLFQAELKGSMAIVLGAEGKGIRRLTRDNCDQVVYIPMQGEAESLNVSVAAGVCLYEAYR 242

Query: 277 QNHF 280
           Q H 
Sbjct: 243 QRHL 246


>gi|284006633|emb|CBA71894.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus
           nasoniae]
          Length = 244

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 11/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH-PFPVKTVPPQTIDKI 104
           +  +YG+H V A L     ++ Q+   K    +  L     L      ++    Q +D+ 
Sbjct: 2   SEIIYGIHAVRALLERDPLRLKQVYILKGREDKRLLPIIHQLEKLGIIIQLANRQWMDRQ 61

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG+  E  P        LD + +   S  L++LD + DPHN+GA LRSA A  
Sbjct: 62  T-ENAVHQGIIAEVKPGRQYQESDLDIIISQVPSPFLLILDGITDPHNLGACLRSAEAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  K  S   +A   K A GA E +P IR++NL   L+++       +G + ++  
Sbjct: 121 IDAVIVPKDKSAQLNATAKKVACGAAESVPLIRVTNLARTLRQLQQH-IWIVGTAGEANH 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +      IAL++GAEG+G+R  T+E    +  + M G++ +LNVS A  V L+    
Sbjct: 180 TLYESKLTGAIALVMGAEGEGMRRLTREHCDELISIPMAGVVSSLNVSVATGVCLFEAVR 239

Query: 279 HF 280
             
Sbjct: 240 QR 241


>gi|325689008|gb|EGD31016.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 242

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|145297770|ref|YP_001140611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850542|gb|ABO88863.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 249

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
              +YG+H VSA L     +  ++ A K     RL             V++V  +T+D  
Sbjct: 3   TELIYGIHAVSALLERTPERFIEVWALKGRDDDRLHPLLAEMESLGLKVQSVNRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
             +   HQG+  +                  L   +    L+VLD V DPHN+GA LRSA
Sbjct: 63  A-EGNNHQGIMAKVIEAPKLAEHDLASLLDNLAEQKAQPFLLVLDGVTDPHNLGACLRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  +  +   ++V+ K A GA E +P I+++NL  +L+++   G   +G + 
Sbjct: 122 DAAGVHAVIVPRDKASGLTSVVRKVACGAAEVVPLIQVTNLARSLRELKDRGVWIVGTAG 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++   + Q      +AL++GAEGKG+R  T+E    +  + M G + +LNVS A  V L+
Sbjct: 182 EADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGVCLF 241

Query: 275 ITQNHF 280
                 
Sbjct: 242 EAVRQR 247


>gi|307704980|ref|ZP_07641867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307621431|gb|EFO00481.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 242

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFSYSELDNILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EHIP  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHIPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|299821035|ref|ZP_07052923.1| RNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816700|gb|EFI83936.1| RNA methyltransferase [Listeria grayi DSM 20601]
          Length = 249

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 11/243 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           + E  ++ G + V  AL +    +KI+   A++  + +            ++ VP Q ID
Sbjct: 2   ENEQEWIGGRNPVLEALRSERDIQKIYIAEASQKGVMKQVIALAKERKLQIQFVPKQKID 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+V  E  HQG+A + +      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  KVV--EGAHQGVAAQISAYQYAELDELFERASTRNEQPFFILLDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII   R S   +  +AK+++GA+EHIP +R++NL   +  +   G    G  + 
Sbjct: 120 AVGAHGIIIPNRRSVGLTQTVAKASTGAIEHIPVVRVTNLNKTIDVLKDRGLWIFGTDAK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                     +  + +++G+EG G+    +E    + HL M G + +LN S AA++ LY 
Sbjct: 180 GSSDYRTMDVDMPLGIVIGSEGAGMSRLVREKCDFLVHLPMKGKVTSLNASVAASILLYE 239

Query: 276 TQN 278
              
Sbjct: 240 VYR 242


>gi|322390887|ref|ZP_08064395.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           parasanguinis ATCC 903]
 gi|321142400|gb|EFX37870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           parasanguinis ATCC 903]
          Length = 242

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL  N   K++     +                 +   P +T+ ++
Sbjct: 2   ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  A      L A+        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  T-EGAVHQGFVLRVAAFAYTDLAAILKQTAQEENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V++K+++GA+EHIP  R++NL+  L K+   GF   G   +   
Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  Q     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|157150299|ref|YP_001449674.1| RNA methyltransferase [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075093|gb|ABV09776.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 243

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VSGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ LI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTGGKLVLIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|327468344|gb|EGF13829.1| RNA methyltransferase [Streptococcus sanguinis SK330]
          Length = 242

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +      +++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQKDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|152999247|ref|YP_001364928.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS185]
 gi|160873860|ref|YP_001553176.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS195]
 gi|304411189|ref|ZP_07392804.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS183]
 gi|307306484|ref|ZP_07586227.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           BA175]
 gi|151363865|gb|ABS06865.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS185]
 gi|160859382|gb|ABX47916.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS195]
 gi|304350382|gb|EFM14785.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS183]
 gi|306910775|gb|EFN41203.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           BA175]
 gi|315266087|gb|ADT92940.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS678]
          Length = 246

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL   AN    F   ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+         L    LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|119897231|ref|YP_932444.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
 gi|119669644|emb|CAL93557.1| tRNA/rRNA methyltransferase [Azoarcus sp. BH72]
          Length = 254

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 9/250 (3%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPP 98
           ++         +YG H VSA L +    + ++  + +   AR+            + VP 
Sbjct: 2   AKPAESSATRLIYGFHAVSAKLRHAPEAVLEVYLSGDRKDARVKKFLATAEAIGTRIVPS 61

Query: 99  Q--TIDKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           +   +D +VG    HQG+            L+  LD +  + L++VLD V DPHN+GA L
Sbjct: 62  EHERLDALVGTRR-HQGVVARIDATRREIKLADVLDNLDENALILVLDGVQDPHNLGACL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A A     ++  K  +   +A  AK ASGA + +PYI ++NL  AL++M   G   +G
Sbjct: 121 RVADAAGAHAVVAPKDRAVGLNATAAKVASGAADTVPYITVTNLARALREMQEAGVWVVG 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + +++K + Q  +   +A +LGAEG GLR  T++T   +A + M G +++LNVS A+ +
Sbjct: 181 AAGEAEKSVYQVDQRGPLAWVLGAEGDGLRRLTRDTCDELAQIPMHGSVESLNVSVASGI 240

Query: 272 ALYITQNHFA 281
            L+  +   A
Sbjct: 241 CLFEARRQRA 250


>gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           metschnikovii CIP 69.14]
 gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
           metschnikovii CIP 69.14]
          Length = 246

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  +YG+H+V+A +     +I ++   K     RL    N        ++ +  + +D  
Sbjct: 3   NELIYGIHSVNAVMQREPARIIEVYVLKGRQDDRLLPVLNELQRLGLSIQEMGRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL  +  P   L    LDA+       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-QGANHQGLIAKVKPAKALNEHDLDAILSQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDRSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEQGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L        +A+++GAEG G+R  T++T   +  + M G + +LNVS A  + L+    
Sbjct: 182 DLYHSKLTGPLAIVMGAEGDGMRRLTRDTCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HFA 281
              
Sbjct: 242 QRN 244


>gi|91775978|ref|YP_545734.1| RNA methyltransferase TrmH, group 3 [Methylobacillus flagellatus
           KT]
 gi|91709965|gb|ABE49893.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Methylobacillus
           flagellatus KT]
          Length = 251

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L+G H V + L   +  + ++L  ++   AR+     +     V+   V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHAASVQEVLVDQDRVDARMKDLLQMAEGANVRVMHVERARLDGMAG 65

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+         P  D        ++     +VLD V DPHN+GA LR A A   
Sbjct: 66  GNARHQGVIARVVDTPIPYKDIHDILESDLKEPPFFLVLDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E +P+I ++NL   L+++   G   +G ++++   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTLRELKDAGVFIVGAAAEADAD 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  +AL+LGAEG GLR  TQET  S+  + M G +++LNVS A+ + LY  +  
Sbjct: 186 LPSTNLSGPLALVLGAEGSGLRRLTQETCDSLISIPMFGSVESLNVSVASGICLYEARRQ 245

Query: 280 F 280
            
Sbjct: 246 R 246


>gi|330445012|ref|ZP_08308666.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493130|dbj|GAA03163.1| 23S rRNA 2'-O-ribose G2251 methyltransferase monomer
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 244

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  ++G+H V A L +   +  ++ A K     RL    N        ++    + +D  
Sbjct: 3   NEMIFGIHAVKAVLASDPARFIEVFALKGRQDERLMPVINELQMLGITIQEAGRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V K A HQG+     P        LD +   + + LL++LD V DPHN+GA LR+A A  
Sbjct: 63  V-KGASHQGIVARVRPGKQYNENDLDDLLAGKENPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              ++  K  S   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 AIAVVVPKDRSAQLNATASKVACGAAEIVPLVRVTNLARTMRALQEKGVWIVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           HGF5]
 gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           HGF5]
          Length = 250

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            E   + G H+V+ AL +  R I ++   +NA   L              ++ V  + +D
Sbjct: 3   QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + AP     +D +            L++LD + DPHN+G+ILR+A 
Sbjct: 62  QMV-PGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  KR S   +A ++K+++GA+E++P  R++NL   + ++   G   +G   D
Sbjct: 121 CTGAHGVILPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 180

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + L   E+ +  +A+++G E KG+    +E    +  L M G I +LN S AA V +Y
Sbjct: 181 AVQELYDTEVFDGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 240

Query: 275 ITQNHF 280
                 
Sbjct: 241 EVLRRR 246


>gi|194098420|ref|YP_002001479.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
 gi|193933710|gb|ACF29534.1| RNA methylase [Neisseria gonorrhoeae NCCP11945]
          Length = 250

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG H V+A L    + I +L   +   +A  R   +        V       ++ I  K
Sbjct: 7   IYGFHAVNARLWQNPKSITELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SK 65

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A     +
Sbjct: 66  GARHQGVVGFIDASKNHVHLEGILENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAV 125

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        L  
Sbjct: 126 IAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDIGGNADLYH 185

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 186 CNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 243


>gi|116516815|ref|YP_816752.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           D39]
 gi|148992659|ref|ZP_01822327.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
 gi|148997484|ref|ZP_01825089.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|168483931|ref|ZP_02708883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1873-00]
 gi|168489618|ref|ZP_02713817.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae SP195]
 gi|168575914|ref|ZP_02721829.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae MLV-016]
 gi|169833851|ref|YP_001694873.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
 gi|116077391|gb|ABJ55111.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           D39]
 gi|147756539|gb|EDK63580.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|147928676|gb|EDK79690.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae SP9-BS68]
 gi|168996353|gb|ACA36965.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172042719|gb|EDT50765.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1873-00]
 gi|183571884|gb|EDT92412.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae SP195]
 gi|183578281|gb|EDT98809.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae MLV-016]
 gi|332073764|gb|EGI84243.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17570]
 gi|332200899|gb|EGJ14971.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41317]
 gi|332201895|gb|EGJ15965.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47368]
          Length = 242

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|312865506|ref|ZP_07725733.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
           F0415]
 gi|311099024|gb|EFQ57241.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus downei
           F0415]
          Length = 246

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 9/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
              Q  +  +YG+H    AL  N   K++     K                 +  +P ++
Sbjct: 2   KRRQEHDDIVYGLHATVEALEANTGNKLYIQDDLKGKNVDKIKALAAQKKVAISWIPKKS 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSA 154
           + ++  + AVHQG  L  +      L A+       ++ L+++LD + DPHN+G+ILR+A
Sbjct: 62  LSEMT-QGAVHQGFVLRVSEFAYSDLAAILAQADQEDNPLILILDGLTDPHNLGSILRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   G+   G   
Sbjct: 121 DATGVAGIIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGYWIFGTDM 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D   P  +     K+ALI+G EG+G+    ++    M  + M G +++LN S AAAV +Y
Sbjct: 181 DG-TPSHKWNTAGKLALIIGNEGRGISANLKKQVDEMITIPMTGHVQSLNASVAAAVLMY 239

Query: 275 ITQNH 279
               H
Sbjct: 240 EVFRH 244


>gi|289579164|ref|YP_003477791.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           italicus Ab9]
 gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           italicus Ab9]
          Length = 249

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   ++G + V  A+ +    I ++  +K A   +    NL       V T   +T+ K
Sbjct: 4   KEQDAIFGRNPVMEAIKSGKE-IEKIYVSKTAKGNISKIINLAKEAGIVVSTTDNETLSK 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+   +A      ++ +       +    L++LD + DPHN+GAI+RSA A
Sbjct: 63  LAGSQ-NHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  KR +   +A + K+++GA+E++   ++SN+ + ++ +   G   IG   + 
Sbjct: 122 FGVHGIIIPKRRAVGVNATVVKTSAGAVEYMKIAKVSNINNTIRNLKERGLWIIGTDVNG 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K  E+   +  +AL++G EGKG+     +    +  + M G I +LN S AA++ +Y  
Sbjct: 182 GKSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 241


>gi|256821782|ref|YP_003145745.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256795321|gb|ACV25977.1| RNA methyltransferase, TrmH family, group 3 [Kangiella koreensis
           DSM 16069]
          Length = 246

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 14/247 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKI 104
           +  +YG+H V   L   S ++ +L    N    R      L     ++ +    Q +D++
Sbjct: 2   SELVYGLHAVEVLLKRSSDRVERLYIQSNRHDQRSHKVVKLAQDKNIEIIQKERQELDEM 61

Query: 105 VGKEAVHQGLALETAPL---------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             +   HQG+     P          +   L  +  +  +++LD V DPHN+GA LRSA 
Sbjct: 62  TDQR--HQGVIAVCRPEKKKSFHEKHIPELLSQIDEAPFILILDGVTDPHNLGACLRSAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  + S + V+ K A GA E +P+I ++NL  A++++   G    G + +
Sbjct: 120 AAGVHMVIAPKDNAASITDVVRKVACGAAETVPFIPVTNLVRAMKQLQEAGVWIAGTAGE 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++ + Q      +A+++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+ 
Sbjct: 180 AEQDIYQANLKGPLAIVMGAEGEGMRRLTRENCDYLIKIPMAGEVSSLNVSVATGVTLFE 239

Query: 276 TQNHFAK 282
                 K
Sbjct: 240 AVRQRIK 246


>gi|154684614|ref|YP_001419775.1| YacO [Bacillus amyloliquefaciens FZB42]
 gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42]
          Length = 249

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 123/243 (50%), Gaps = 13/243 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N     A+   +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVMELAKKRGVTIQFVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V  E  HQG+  + A      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--EGQHQGVVAQVAAYEYAQLDELYKRAEERNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GI+  KR +   ++ +AK+++GA+EHIP ++++NL   L +M   G   +G  + 
Sbjct: 120 AVGAHGIMIPKRRAVGLTSTVAKASTGAIEHIPVVKVTNLARTLDEMKERGIWVVGTDAS 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +++          +AL++G+EG+G+    +E    +  L M G + +LN S AA + +Y 
Sbjct: 180 AREDYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VYR 242


>gi|319775208|ref|YP_004137696.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
 gi|317449799|emb|CBY86007.1| 23S rRNA (Gm2251)-methyltransferase [Haemophilus influenzae F3047]
          Length = 246

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK    
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDKKADG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGSVA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL+  L+ +        +G + +  + +
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEVAETI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
           uraniireducens Rf4]
          Length = 242

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 120/241 (49%), Gaps = 6/241 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKI 104
           ++  +YG+++V  AL    R     +A   +  RL+    L      PV+    + I ++
Sbjct: 2   KDEIIYGLNSVMEALRGKRRAFELFVAPGGSDRRLEKLLALAAEKGVPVRQRDKRDIARL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            G E  HQG+AL   P     L  +       LL+VLD V DPHN+GA++RSA      G
Sbjct: 62  CGTE-HHQGVALRAEPFAYAQLSDILVPGTDGLLLVLDGVQDPHNLGALIRSAACAGAQG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A + K+++GA+E IP   ++N+   L+++ + GF   G   +S   + 
Sbjct: 121 VIIPRDRAVGVTATVEKASAGAIETIPVAEVTNVAHTLEELKNAGFWIYGADGESPLSIF 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +     + L++G+EG+G+RP  ++    +  + + G + +LN S A  + L+      +
Sbjct: 181 DQKLTGAVVLVIGSEGEGIRPLVKKKCDFLVSIPLRGGVNSLNASVAGGILLFEVVRQRS 240

Query: 282 K 282
           K
Sbjct: 241 K 241


>gi|194289992|ref|YP_002005899.1| 23S rRNA (guanosine-2'-o-)-methyltransferase rlmb (23S rRNA gm2251
           2'-o-methyltransferase) [Cupriavidus taiwanensis LMG
           19424]
 gi|193223827|emb|CAQ69834.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Cupriavidus taiwanensis LMG
           19424]
          Length = 247

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 9/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPPQTID 102
            +   L G H V+A L    + +  +        R   D   L     V+   V  + + 
Sbjct: 2   AKQKLLIGFHAVTARLRQDPKGVSDIYIESARRDRRMQDFVRLAESLGVRLHPVDAERLR 61

Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + G +  HQG+      +     L   LD +  + LL+VLD V DPHN+GA LR A   
Sbjct: 62  GMAGTDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG +  ++
Sbjct: 121 GAHAVIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTE 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L         A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY   
Sbjct: 181 KSLYDIDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|119947021|ref|YP_944701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Psychromonas
           ingrahamii 37]
 gi|119865625|gb|ABM05102.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas
           ingrahamii 37]
          Length = 246

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDK 103
           ++  LYG+H+V A L     +  ++ A K     RL+      +     V+ +  + +D 
Sbjct: 3   KSELLYGIHSVDALLEKQPERFIEVYALKGREDERLNNIIAKLNEWGISVQLMNRKAMDD 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               E  HQG+              L   L+++     L++LD V DPHN+GA LRSA A
Sbjct: 63  KSEGEQ-HQGIIARVKTAKVLNDNDLDSLLESLTAPPFLLILDGVTDPHNLGACLRSADA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S S + V+ K A GA E +P I ++NL  A++ +   G    G + ++
Sbjct: 122 AGVHAVIIPKDNSASLTPVVRKVACGAAESVPLIHVTNLARAMRSLQDKGVWIYGTAGEA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + L        +AL +GAEGKGLR  T+E    +  L M G + +LNVS A  V L+  
Sbjct: 182 TQSLYDCKLEGGMALAMGAEGKGLRRLTREHCDQLIKLPMAGAVSSLNVSVATGVCLFEV 241

Query: 277 QNHFA 281
                
Sbjct: 242 VRQRG 246


>gi|15896402|ref|NP_349751.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15026220|gb|AAK81091.1|AE007810_10 RRNA methylase, YACO B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325510559|gb|ADZ22195.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
          Length = 252

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 114/247 (46%), Gaps = 12/247 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQT 100
           ++     + G + V  AL + S  I Q+L +         +          PVK V  + 
Sbjct: 3   NKEREDLIEGRNAVIEALKSDS-TIEQVLVSSGKSEGSINVILAKAKEKGIPVKYVDRKK 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +DKI     VHQG+   + P     +D +            ++VLD + DPHN+G+I+R+
Sbjct: 62  LDKI-SNGGVHQGVIAISTPYNYCDVDDIILNAKEKNEDPFILVLDEIEDPHNLGSIIRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A      GII  KR +   +  + K+++GA++++   ++SN+  A+ K+   G    G  
Sbjct: 121 AELCGVHGIIIPKRRNVGVTPTVYKTSAGAVKYVKIAKVSNINLAIDKLKKEGIWVYGAE 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D +     +     +AL++G+EG+G+   T++    +  + M G + +LN S AA + +
Sbjct: 181 IDGENYCYNQNMTGALALVIGSEGRGISKLTKQKCDVLVKIPMVGKVNSLNASVAAGIVM 240

Query: 274 YITQNHF 280
           Y      
Sbjct: 241 YEILKQR 247


>gi|322388153|ref|ZP_08061757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           infantis ATCC 700779]
 gi|321140825|gb|EFX36326.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           infantis ATCC 700779]
          Length = 242

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 123/240 (51%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      L+ +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKEEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTSGKVALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|289168211|ref|YP_003446480.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
 gi|288907778|emb|CBJ22618.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus mitis B6]
          Length = 242

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILEKTHQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|324992441|gb|EGC24362.1| RNA methyltransferase [Streptococcus sanguinis SK405]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PTHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|324996031|gb|EGC27942.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK678]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TA-GAVHQGFVLRVAEFAYTDFEVLFKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|327462795|gb|EGF09117.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
              E VHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TDGE-VHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|307702003|ref|ZP_07639011.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
           NCTC 12261]
 gi|307616648|gb|EFN95837.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus mitis
           NCTC 12261]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKGEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 249

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 11/240 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   ++G + V  A+ +    I ++  +K A   +    NL       V T   +T+ K
Sbjct: 4   KEQDVIFGRNPVMEAIKSGKE-IEKIYISKTAKGNISKIINLAKEAGIVVSTTDNETLSK 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+   +A      ++ +       +    L++LD + DPHN+GAI+RSA A
Sbjct: 63  LAGSQ-NHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   + 
Sbjct: 122 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMKIAKVSNINNTIRNLKERGLWIVGTDVNG 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K  E+   +  +AL++G EGKG+     +    +  + M G I +LN S AA++ +Y  
Sbjct: 182 GKSFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASLLVYQV 241


>gi|306826620|ref|ZP_07459925.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304431198|gb|EFM34202.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 248

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D +        + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 70  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ S GF   G   +   P 
Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKSRGFWIFGTDMNG-TPS 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 188 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|327460672|gb|EGF07007.1| RNA methyltransferase [Streptococcus sanguinis SK1]
 gi|332359937|gb|EGJ37751.1| RNA methyltransferase [Streptococcus sanguinis SK1056]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 247

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 119/240 (49%), Gaps = 11/240 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   ++G + V  A+ +    I ++  +K A   +    N        V T    T+ K
Sbjct: 2   EEQNVIFGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINFAKEAGIVVSTTDNDTLSK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+   +A      +D +       +    L++LD + DPHN+GAI+RSA A
Sbjct: 61  LAGSQ-NHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   ++
Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVGTDVNA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +K  E+   +  +A ++G EGKG+     +    +  + M G I +LN S AA++ +Y  
Sbjct: 180 EKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239


>gi|149002852|ref|ZP_01827778.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|168493358|ref|ZP_02717501.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC3059-06]
 gi|194397072|ref|YP_002038090.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54]
 gi|225859218|ref|YP_002740728.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 70585]
 gi|237651107|ref|ZP_04525359.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CCRI 1974]
 gi|303254383|ref|ZP_07340490.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS455]
 gi|303259053|ref|ZP_07345032.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303261733|ref|ZP_07347680.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264406|ref|ZP_07350326.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
 gi|303267526|ref|ZP_07353374.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
 gi|303269332|ref|ZP_07355105.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
 gi|147759146|gb|EDK66140.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|183576562|gb|EDT97090.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC3059-06]
 gi|194356739|gb|ACF55187.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54]
 gi|225722127|gb|ACO17981.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 70585]
 gi|301802185|emb|CBW34931.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV200]
 gi|302598630|gb|EFL65669.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS455]
 gi|302637313|gb|EFL67801.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639996|gb|EFL70452.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302641162|gb|EFL71536.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS458]
 gi|302642927|gb|EFL73226.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS457]
 gi|302646218|gb|EFL76445.1| spoU rRNA methylase family protein [Streptococcus pneumoniae BS397]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
           V453]
 gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
           V453]
          Length = 250

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            E   + G H+V+ AL +  R I ++   +NA   L              ++ V  + +D
Sbjct: 3   QEEEVVAGKHSVTEALKSG-RTINKIWIAENAQKHLTLPIIAEAKKLGIVIQHVDKRKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + AP     ++ +            L++LD + DPHN+G+ILR+A 
Sbjct: 62  QMV-PGVQHQGVVAQAAPYAYVEVEDLLKVAEEKGEPPFLLLLDEIEDPHNLGSILRTAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G++  KR S   +A ++K+++GA+E++P  R++NL   + ++   G   +G   D
Sbjct: 121 CTGAHGVVLPKRRSAQVTATVSKTSAGAVEYVPVARVTNLGQTIDQLKEMGVWVVGTVVD 180

Query: 216 SKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + L   E+ +  +A+++G E KG+    +E    +  L M G I +LN S AA V +Y
Sbjct: 181 AVQELYDTEVFDGPVAIVIGNESKGMGRLIREKCDVLVKLPMAGKINSLNASVAAGVVMY 240

Query: 275 ITQNHF 280
                 
Sbjct: 241 EVLRRR 246


>gi|325567613|ref|ZP_08144280.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159046|gb|EGC71192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Enterococcus
           casseliflavus ATCC 12755]
          Length = 279

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           +     K        K+ +   +K       E+ F++G H V+ AL        +L  ++
Sbjct: 7   RKRPNKKTAGQSEARKENRPDRRKEAEGEAIEDNFVFGYHAVAEALKEGRG--NKLFLSE 64

Query: 76  NA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129
            A    + RL   A      PVK VP Q +D +   + VHQG+ L   P    TLD +  
Sbjct: 65  EARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM-SDQGVHQGMILAITPYQYLTLDELLA 122

Query: 130 --RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +   L ++LD++ DPHN G+I+R+A A   DGII  K  +   + ++ K+++GA+EHI
Sbjct: 123 QTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIVVKTSTGAVEHI 182

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  R++NLT A+Q++   GF   G                 + LI+G EG+G+    ++ 
Sbjct: 183 PVARVTNLTQAVQQLKKAGFWIFGTDMSGS-DYRTWNAQGAVGLIIGNEGRGMGEGLKKE 241

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              M  + M G +++LN S AA + +Y  
Sbjct: 242 VDQMLTIPMTGHVQSLNASVAAGLLMYQA 270


>gi|325695531|gb|EGD37431.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 242

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|300022432|ref|YP_003755043.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 285

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/271 (38%), Positives = 158/271 (58%), Gaps = 8/271 (2%)

Query: 4   ISKKKSEKIFSLKD----SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           +SK   +K +  K+    S   +  R  R     +     S   +    L L+G+H V A
Sbjct: 1   MSKDHFKKPWRDKNRFSASGGQRYGRPLRAKTPHRGGPASSSGENAEGPLVLFGLHAVEA 60

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL NP R++ +L+ T+NA  RL  +A  P    +  V P+ +D+++G + VHQG+ALET 
Sbjct: 61  ALKNPKRRVHRLMLTENAERRL-IEAVGPITAKIDRVTPRDLDRLLGPDTVHQGVALETE 119

Query: 120 PLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           PL  P  D +    + + L+VLD V DPHN+GAILRS+  F   G++ T R+SP  + VL
Sbjct: 120 PLPEPDWDELARAADGRPLIVLDQVTDPHNVGAILRSSAVFGASGLVMTHRHSPPLNGVL 179

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AKSASGALE IP   ++NL  A++++   GF  +GL  +++  +E    +   AL++G+E
Sbjct: 180 AKSASGALELIPVALVANLARAMEELREAGFALVGLDGEAETAIEDLDWSRPTALVMGSE 239

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GKGLR  T++T  ++A +   G + +LNVSN
Sbjct: 240 GKGLRELTRKTCDTLARISTDGPVASLNVSN 270


>gi|319744132|gb|EFV96505.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 251

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +   +  +  +YG+H V+ +L  N   K++     +                 +   P
Sbjct: 4   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            +T+  +     VHQG  L+ +      L  +        + L+++LD + DPHN+G+IL
Sbjct: 64  KKTLSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  L  +    F   G
Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +   P  +     K+AL++G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 183 TDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241

Query: 272 ALYITQNHF 280
            +Y    + 
Sbjct: 242 LMYEVFRNR 250


>gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           JA-3-3Ab]
          Length = 354

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 21/254 (8%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--------DANLPHPFPVK 94
            ++PE   +YG  TV AAL + +  + ++      L RL +        +        + 
Sbjct: 89  EAEPEQEIIYGRQTVLAALRSQA-TLNRVWV----LPRLRYSPQFWSLLEEAKARGTVID 143

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNI 147
            V  Q ++ +    A HQG+A +  P     L+ +           +L+VLD + DPHN+
Sbjct: 144 EVSLQRLNLLTA-GANHQGIAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPHNL 202

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RS  AF   G++  +R +   +A + K A+GAL  +P  R+ NL  AL+ +   GF
Sbjct: 203 GAIARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALSTLPVARVVNLNRALEYLKGQGF 262

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G +S    P+        IAL++G+EG+G+   TQ     +  + + G  ++LN S 
Sbjct: 263 WVYGTTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASV 322

Query: 268 AAAVALYITQNHFA 281
           AA +ALY      +
Sbjct: 323 AAGIALYEIHRQRS 336


>gi|237654034|ref|YP_002890348.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
 gi|237625281|gb|ACR01971.1| RNA methyltransferase, TrmH family, group 3 [Thauera sp. MZ1T]
          Length = 251

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 9/250 (3%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTV 96
           ++         +YG H VSA L +    + ++  T   K+A  R            +   
Sbjct: 2   AKAPENTPTRLIYGFHAVSAKLRHAPDSVLEIFLTADRKDARVRKFLAQAESAGVRITQS 61

Query: 97  PPQTIDKIVGKEAVHQGLALETAP-----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
               +D +VG    HQG+  +         L+  LD++  + L++VLD V DPHN+GA L
Sbjct: 62  EGDKLDALVGTRR-HQGVVAKVDATRREIKLADVLDSLDENALILVLDGVQDPHNLGACL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A A     ++  K  +   +A   K ASGA + +PYI ++NL  AL++M   G   +G
Sbjct: 121 RVADAAGAHAVVAPKDRAVGLNATAVKVASGAADTVPYITVTNLARALREMQDAGVWVVG 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + +++K L    +   +A +LGAEG GLR  T+ET   +A + M G +++LNVS A+ +
Sbjct: 181 AAGEAEKTLYGVDQKVPVAWVLGAEGDGLRRLTRETCDELARIPMHGSVESLNVSVASGI 240

Query: 272 ALYITQNHFA 281
            L+  +    
Sbjct: 241 CLFEARRQRG 250


>gi|56807805|ref|ZP_00365654.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
 gi|209560082|ref|YP_002286554.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
 gi|209541283|gb|ACI61859.1| 23S rRNA methyltransferase [Streptococcus pyogenes NZ131]
          Length = 248

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D +        + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 70  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +   P 
Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG-TPS 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 188 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|315634962|ref|ZP_07890243.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
           segnis ATCC 33393]
 gi|315476224|gb|EFU66975.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aggregatibacter
           segnis ATCC 33393]
          Length = 245

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A ++N   ++ ++LA K     RL    N        V+ +  QT+DK    
Sbjct: 5   IYGIHAVKAFVSNHPERLIEVLALKGRDDQRLQPLINEIQRLGISVQFLNRQTLDKKAEG 64

Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+      L          L   RN  LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGIIARVHSLPELNEHDLDRLLETRNVPLLLVLDGVTDPHNLGACLRTADAAGVSA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   ++   K A GA E++P IR++NL   L+ +        +G + ++ + L
Sbjct: 124 VIVPKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRDLQERHNVWVVGTAGEATETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           bemidjiensis Bem]
 gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           bemidjiensis Bem]
          Length = 248

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDK 103
           +   +YG++ V  AL   SR+I +L     +A  RL+    L      PV+      +++
Sbjct: 3   KEEIIYGLNPVMEALR-GSREIHELFVAGTSADKRLEKLLKLAAERKIPVRQREKGDLNR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAF 157
           + G E  HQG+AL+  P     LD V          L++VLD V DPHN+GA++RSA   
Sbjct: 62  LCGTE-HHQGVALKVEPFPYADLDDVLEGLQGTRDGLILVLDSVQDPHNLGALIRSAACA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             + ++  K  +   +AV  KS++GA E I   +++N++ AL+ +   GF   G    ++
Sbjct: 121 GANAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSAR 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q+     +AL++G EG+G+RP  ++   ++  + + G + +LN S A  + L+   
Sbjct: 181 HTLYQQDFTGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIFLFEVV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|15675741|ref|NP_269915.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|19746851|ref|NP_607987.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|71911465|ref|YP_283015.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|139474428|ref|YP_001129144.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|13622961|gb|AAK34636.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes M1
           GAS]
 gi|19749091|gb|AAL98486.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes
           MGAS8232]
 gi|71854247|gb|AAZ52270.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|134272675|emb|CAM30946.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 248

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D +        + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 70  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +   P 
Sbjct: 129 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG-TPS 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 188 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|253699965|ref|YP_003021154.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
 gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
          Length = 249

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDK 103
           +   +YG++ V  AL   SR+I +L     ++  RL+    L      PV+      +++
Sbjct: 3   KEEIIYGLNPVMEALR-GSREIHELFVAGTSSDKRLEKLLKLAADRKIPVRQREKGDLNR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + G E  HQG+AL+  P     LD V          L++VLD V DPHN+GA++RSA   
Sbjct: 62  LCGTE-HHQGVALKVEPFPYADLDDVLAELKGNQEGLVLVLDSVQDPHNLGALIRSAACA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++  K  +   +AV  KS++GA E I   +++N++ AL+ +   GF   G    ++
Sbjct: 121 GAHAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFWIYGADGSAR 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q+  +  +AL++G EG+G+RP  ++   ++  + + G + +LN S A  + L+   
Sbjct: 181 STLYQQDFSGPVALVIGGEGEGIRPLVRKGCDAVVSIPLQGGVNSLNASVAGGIMLFEVV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|148984799|ref|ZP_01818052.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP3-BS71]
 gi|148990265|ref|ZP_01821476.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP6-BS73]
 gi|168486152|ref|ZP_02710660.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1087-00]
 gi|225860774|ref|YP_002742283.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230952|ref|ZP_06964633.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254976|ref|ZP_06978562.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502589|ref|YP_003724529.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|147922821|gb|EDK73937.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147924404|gb|EDK75494.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP6-BS73]
 gi|183570789|gb|EDT91317.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC1087-00]
 gi|225727049|gb|ACO22900.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238184|gb|ADI69315.1| TrmH family tRNA/rRNA methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301800307|emb|CBW32933.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|327389642|gb|EGE87987.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA04375]
 gi|332073794|gb|EGI84272.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41301]
          Length = 242

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ +I  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|296877290|ref|ZP_06901330.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
 gi|296431810|gb|EFH17617.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
          Length = 242

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL  N   K++     +                 +   P +T+ ++
Sbjct: 2   ENNDIVYGVHAVTEALQANTGNKLYIQEDLRGKNVDKIKALAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  A      L  +        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  T-EGAVHQGFVLRVAAFAYTDLAVILKQTVQEENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V++K+++GA+EHIP  R++NL+  L K+   GF   G   +   
Sbjct: 121 VSGVIIPKHRAVGVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKEEGFWIFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  Q     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHQWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|126175841|ref|YP_001051990.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS155]
 gi|125999046|gb|ABN63121.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS155]
          Length = 246

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL   AN    F   ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+         L    LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNERDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|304315921|ref|YP_003851066.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777423|gb|ADL67982.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 248

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102
           +     +YG + V  A+N+  R+I ++  +KNA   +             V T    T+D
Sbjct: 2   KENENIIYGRNPVLEAINSG-REIEKIYVSKNAKGNISKIIKAARDKNIIVSTTDNGTLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+      HQG+A   +      ++ +            +++LD + D HN+GAI+R+A 
Sbjct: 61  KLSNY-GNHQGIAALCSLYKYYEVEDILEYAEKRGEKPFILLLDGITDTHNLGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AFS  GII  KR S   ++ + K+++GA E+I  +++SN+ +A+  +   G   +G S D
Sbjct: 120 AFSAHGIIIPKRRSAVVNSTVVKTSAGATEYIKIVKVSNINNAINNLKKQGVWIVGSSLD 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +    +       +A+++G+EGKG+   TQ+    +A + M G I +LN S AA++ +Y 
Sbjct: 180 ADVDFQNVDYTGPVAIVIGSEGKGMSELTQKNCDYIAKIPMRGNINSLNASVAASIFMYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VIRQR 244


>gi|332970729|gb|EGK09709.1| RNA methyltransferase [Desmospora sp. 8437]
          Length = 247

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 14/248 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WDANLPHPFPVKTVPPQTI 101
           EN ++ G   V  AL    R + +LL  + A           +        V+ VP QT+
Sbjct: 2   ENEWVIGRRAVMEALK-AGRSMGKLLVAEGAGRGKGGLGPLLEEARRQGVDVQQVPRQTL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D++      HQG+A +  P     L+ +            +++LD + DPHN+G+ILR+A
Sbjct: 61  DRVAA-GLNHQGVAAQAEPWRYAELEELFQRAEERDEPPFILLLDGIEDPHNLGSILRTA 119

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G++  KR +   +  +AK+++GA+EH+P +R++NL     ++   G   +   +
Sbjct: 120 DASGVHGVVIPKRRAAGLTPTVAKTSAGAVEHVPVVRVTNLNRTADELKERGVWLVAGDA 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D+    ++   +  +AL++G EGKG+  + +E       L M G + +LN S AAA+ +Y
Sbjct: 180 DASARYDEMDYSLPVALVIGNEGKGVSRRLKEKCDFTVGLPMKGAVSSLNASVAAALLMY 239

Query: 275 ITQNHFAK 282
                  K
Sbjct: 240 EVLRGREK 247


>gi|261492875|ref|ZP_05989421.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496775|ref|ZP_05993150.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307614|gb|EEY08942.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311416|gb|EEY12573.1| RNA methyltransferase, TrmH family, group 3 [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 247

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A  +N   ++ ++L  K     RL    N        ++ V  QT+D    +
Sbjct: 5   IYGIHAVKAFWDNAPERLIEVLVLKGREDKRLMPLLNELQRLGVAIQQVNRQTLDNK-SQ 63

Query: 108 EAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             VHQG+     P   L    L+A+   + + LL++LD V DPHN+GA LR+A A   D 
Sbjct: 64  GEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   +    K A GA E +P IR++NL   ++ +        +G + +++  +
Sbjct: 124 VIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLARTMRDLQERHNVWIVGTAGEAESGI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +      IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+     
Sbjct: 184 YEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQ 242


>gi|253996415|ref|YP_003048479.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253983094|gb|ACT47952.1| RNA methyltransferase, TrmH family, group 3 [Methylotenera mobilis
           JLW8]
          Length = 250

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L+G H V + L   S  + ++L  ++   AR+    N+     V+T  V    +D + G
Sbjct: 6   ILFGFHAVLSRLRQHSASVQEILIDRDRVDARMKDLLNMAESSGVRTMQVERSRLDGMAG 65

Query: 107 KEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+         P  D        +      ++LD V DPHN+GA LR A A   
Sbjct: 66  MNGRHQGVIARVVDTPIPYKDIHDILESDLSEPAFFLILDGVEDPHNLGACLRVADAMGV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  +   +A + K A GA E +P+I ++NL   ++++   G   +G + DS   
Sbjct: 126 HAVIAPKDRAAGLNATVRKVACGAAETVPFIAVTNLARTIRELKEAGVFVVGTTMDSPST 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     N  IAL+LGAEG G+R  T ET  ++  + M G +++LNVS A+ + LY  +  
Sbjct: 186 LLNTKLNGPIALVLGAEGDGMRRLTAETCDALMTIPMFGSVQSLNVSVASGICLYEVRRQ 245

Query: 280 FA 281
            +
Sbjct: 246 RS 247


>gi|229917377|ref|YP_002886023.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
           AT1b]
 gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
           AT1b]
          Length = 250

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 124/244 (50%), Gaps = 12/244 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTI 101
           +    FLYG + V  AL +  R + ++   +      L     + +   V+   VP   +
Sbjct: 3   EEGIDFLYGRNPVLEALRSG-RDMNKVFIMEGQQKGPLAQIIAMANEASVQVSFVPKTKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           +K+ G E  HQG+    A     T++ +         + L ++LD + DPHN+G+ILR+A
Sbjct: 62  EKMAGSE-HHQGVVAAVAAYEYKTVEDMFALAASKEETPLFILLDELEDPHNLGSILRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  KR S   +  +AK+++GA+EHIP  R++NLT  L+++   G   +G  +
Sbjct: 121 DAVGAHGIIIPKRRSVGLTQTVAKASTGAIEHIPVARVTNLTRTLEELKEKGLWVVGTDA 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +   +   N  + +++G+EGKG+    +E+   + HL M G + +LN S AAA+ LY
Sbjct: 181 KESQDYRRLDGNMPLVVVIGSEGKGMSRLVRESCDFLVHLPMVGHVTSLNASVAAALLLY 240

Query: 275 ITQN 278
               
Sbjct: 241 EVHR 244


>gi|226309787|ref|YP_002769681.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Brevibacillus brevis
           NBRC 100599]
 gi|226092735|dbj|BAH41177.1| probable 23S rRNA (guanosine-2'-O-)-methyltransferase
           [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
             ++ G + V  AL +  R I ++   +     L    +         V T   + +D++
Sbjct: 3   EEWILGKNPVIEALRSG-RTINKIWVAEGTNKNLMGPVFALAKEQGVIVTTANRKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  +  HQG+    A      +D +         +  +++LD + DPHN+G+I+R+A A 
Sbjct: 62  VSTD-NHQGVVASVAAYDYVEVDDILKRAEEKNEAPFILLLDELEDPHNLGSIMRTADAV 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S S +A +AK+++GA+ ++P  R++NL   ++++   G    G  + +K
Sbjct: 121 GAHGVIIPKRRSVSLTATVAKASAGAINYVPVARVTNLVRTMEELKERGVWIAGTDASAK 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   Q      +A+++G+EGKG+    +E    +  L M G + +LN S AAA+ +Y   
Sbjct: 181 QDFRQGDYTMPLAIVIGSEGKGMSRLVRENCDFLYSLPMAGNVTSLNASVAAALLMYEVY 240

Query: 278 N 278
            
Sbjct: 241 R 241


>gi|113868323|ref|YP_726812.1| rRNA methylase [Ralstonia eutropha H16]
 gi|113527099|emb|CAJ93444.1| rRNA methylase [Ralstonia eutropha H16]
          Length = 247

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 117/243 (48%), Gaps = 9/243 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPPQTID 102
            +N  L G H V+A L   ++ +  +        R   D   L     V+   V  + + 
Sbjct: 2   AKNKLLIGFHAVTARLRQDAKGVTDVYIESARRDRRMQDFVRLAESLGVRLHPVDAERLR 61

Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + G +  HQG+      +     L   LD +  + LL+VLD V DPHN+GA LR A   
Sbjct: 62  GMAGTDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRVADGA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG +  ++
Sbjct: 121 GAHAVIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTE 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L         A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY   
Sbjct: 181 KSLYDIDFKGPTAIVMGAEGEGMRRLTRETCDELVGIPMAGGVESLNVSVASGVCLYEAV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|313124317|ref|YP_004034576.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280880|gb|ADQ61599.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|325685666|gb|EGD27748.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 249

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 12/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L N  S KI ++   +      AR  +         ++ VP  
Sbjct: 2   SSTNNDFVFGRHAGIDFLKNQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        +  L++LD++ DPHN+G+ILRS
Sbjct: 62  KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N K  L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 181 MEG-DDYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239

Query: 274 YITQN 278
           Y   N
Sbjct: 240 YQAFN 244


>gi|167625583|ref|YP_001675877.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           halifaxensis HAW-EB4]
 gi|167355605|gb|ABZ78218.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           halifaxensis HAW-EB4]
          Length = 246

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 10/238 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           +G+H V A L N   ++ ++   +    ARL     +       V+    + +D+     
Sbjct: 8   FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQYASRKALDEK-SDG 66

Query: 109 AVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+  +  P   L    L A+        L++LD V DPHN+GA LR+A A    G+
Sbjct: 67  GQHQGVVAKVKPAKILSDNELSAMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   + V++K A GA E +P  +++NL   ++ +   G   IG + ++   L Q
Sbjct: 127 IVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGEADCELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A+ +GAEGKGLR  ++E+  ++  + M G + +LNVS A  V L+      
Sbjct: 187 ASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|149011685|ref|ZP_01832881.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764116|gb|EDK71048.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP19-BS75]
 gi|301794481|emb|CBW36920.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|332203287|gb|EGJ17355.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47901]
          Length = 242

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 9/236 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y  
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEV 237


>gi|52424529|ref|YP_087666.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306581|gb|AAU37081.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 245

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 112/240 (46%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V++ L     ++ ++   K     RL       H     V+ +  QT+D     
Sbjct: 5   IYGIHAVNSFLATAPERLIEVYVLKGREDKRLQPLLKELHQLGISVQFLNRQTLDNKANG 64

Query: 108 EAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P      + +          LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  E-VHQGIIARVQPAKELNENDLERILSNNKDPLLLVLDGVTDPHNLGACLRTADAAGVCA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL   L+ +        +G + ++ + L
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVVPLIRVTNLARTLRDLQQSHNIWVVGTAGEATETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLIGPLALVMGAEGDGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|114564515|ref|YP_752029.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335808|gb|ABI73190.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           frigidimarina NCIMB 400]
          Length = 246

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102
            +   ++G+H V A L+N   ++ +L   +     RL    NL   F   ++    + +D
Sbjct: 2   KKQDTIFGIHAVQALLDNSPERVIELWLLQGRDDERLTPLINLASTFGTTLQRAARKVLD 61

Query: 103 KIVGKEAVHQGLALETA---PLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
              G  + HQG+        PL    LD + +      L++LD V DPHN+GA LR+A A
Sbjct: 62  DKAGS-SQHQGIVARVKAVKPLTEKDLDELLDKTAVPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   ++ ++K A GA E IP  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVHAVIVPKDNSVGLTSTVSKVACGAAETIPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  + Q      +A+ +GAE KGLR  ++E   S+  + M G + +LNVS A  V L+  
Sbjct: 181 EGNVYQADLKGPLAIAMGAEDKGLRRLSREGCDSLVSIPMSGSVSSLNVSVATGVCLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|227501072|ref|ZP_03931121.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
 gi|227216845|gb|EEI82243.1| tRNA/rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108
           +YG   V  +L+    KI++    K     +D            +  V  +  DKI   +
Sbjct: 4   IYGRKPVLDSLDTDI-KIYKAYIQKQNSKLVDTIIKKLEEKNIEISFVDKRFFDKI---D 59

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+ LE       T+D V+++  L++LD + DPHN+GAI+RSA +F  DG+I  +R 
Sbjct: 60  MNHQGVMLEVESFKYATMDDVKDANRLIILDKIEDPHNLGAIIRSAESFGFDGVIIPERR 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S ++ + K+++GA+ +I  IR++NLT  ++ +   GF   GL+ ++   + +     K
Sbjct: 120 SASVTSTVYKTSAGAINNIKVIRVTNLTRTIKDLKDMGFWIYGLAGEADSDISKADLKGK 179

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + L++G EG+G+    +E    + ++ M G + +LN S AA +++Y     
Sbjct: 180 VTLVIGNEGEGISRLVRENCDMLINIPMLGKVNSLNASVAAGISMYELLRQ 230


>gi|15901307|ref|NP_345911.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|111657374|ref|ZP_01408131.1| hypothetical protein SpneT_02001428 [Streptococcus pneumoniae
           TIGR4]
 gi|221232182|ref|YP_002511335.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225854898|ref|YP_002736410.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae JJA]
 gi|14972946|gb|AAK75551.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae TIGR4]
 gi|220674643|emb|CAR69212.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225722312|gb|ACO18165.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae JJA]
          Length = 242

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ +I  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRTVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 378

 Score =  256 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 13/250 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPP 98
            ++ E   +YG  TV AAL + +  + ++           +    +        +  V P
Sbjct: 100 ETELEQEIIYGRQTVLAALKSQA-TLNRVWILPKLRYSPQFLSLLEEAKARGTVIDEVSP 158

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAIL 151
           + ++ +    A HQG+A +  P     L+ +         + +L+VLD + DPHN+GAI 
Sbjct: 159 KRLNALTA-GANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGAIA 217

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RS  AF   G++  +R +   ++ + K A+GAL  +P  R+ NL  AL+ +   GF   G
Sbjct: 218 RSVEAFGMQGMVIPQRRAAGVTSTVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWVYG 277

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            +S    P+        IAL++G+EG+G+   TQ     +  + + G  ++LN S AA +
Sbjct: 278 TTSRGADPIYSADFQRPIALVVGSEGEGISLLTQRHCDQLLSIPLAGRTESLNASVAAGI 337

Query: 272 ALYITQNHFA 281
           ALY      +
Sbjct: 338 ALYEIHRQRS 347


>gi|251781697|ref|YP_002995999.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390326|dbj|BAH80785.1| 23S rRNA Gm2251 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 248

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +       ++ L+++LD + DPHN+G+ILR+A A +  
Sbjct: 69  EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V++K+++GA+EH+P  R++NL+  L K+ + GF T G   +   P 
Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTYGTDMNG-TPS 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 188 HRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|325686893|gb|EGD28918.1| RNA methyltransferase [Streptococcus sanguinis SK72]
          Length = 242

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V  AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVKEALAANTGNKLYIQDDLRGKKVEKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++N++  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNISQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|147676634|ref|YP_001210849.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
 gi|146272731|dbj|BAF58480.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
          Length = 261

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 12/257 (4%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPF 91
           + N K +  ++ E+  + G + V  AL    R I +LL  + AL    R  +D       
Sbjct: 5   NLNLKKKGRNRLED-IIAGRNPVREALRAN-RPINKLLIAEGALTGSLREIYDLARERKI 62

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPH 145
           PV+ V  Q + K+V  EA HQG+    A      +D +           L++LD V+DPH
Sbjct: 63  PVQRVERQHLSKLV-PEASHQGVVALAAVREYVDVDDILAGVAPGEDPFLILLDEVHDPH 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILR+A A    GII  +R S   S  +A+S++GA+E++P  R++N+   ++ +   
Sbjct: 122 NLGAILRTADAAGAHGIIIPRRRSAPLSRTVARSSAGAVEYVPVARVANIARTIELLKGK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G   D ++       +  +AL++G EGKGL    +E    +  L M G + +LN 
Sbjct: 182 GLWVAGADPDGREVYWDARLDGPVALVIGGEGKGLGRLVKEKCDVLVRLPMSGRVNSLNA 241

Query: 266 SNAAAVALYITQNHFAK 282
           S AAA+  Y       K
Sbjct: 242 SVAAALLSYEVVRQRRK 258


>gi|307709243|ref|ZP_07645701.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307619826|gb|EFN98944.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 242

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +                 +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKKLATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDQILVKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241


>gi|50915006|ref|YP_060978.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|50904080|gb|AAT87795.1| 23S rRNA Gm2251 methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 257

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 19  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 78

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D +        + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 79  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 137

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +   P 
Sbjct: 138 GVIIPKHRSVGVTPVVSKTSTGAVEHIPIARVTNLSQILDKLKARGFWIFGTDMNG-TPS 196

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 197 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 256


>gi|328944843|gb|EGG39003.1| RNA methyltransferase [Streptococcus sanguinis SK1087]
          Length = 242

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLGKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALVIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|168491355|ref|ZP_02715498.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574511|gb|EDT95039.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae CDC0288-04]
          Length = 242

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENSLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
 gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
          Length = 324

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 33/301 (10%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR-------------HTSQPENLFLYG 53
           ++SE+   +K      L    R +KK +    K R             ++ + +N  +YG
Sbjct: 12  RESERPQPIKIKGKRVLSHPIRTHKKAEVILPKPRLLDQAYQPPVQIKNSEEQDNDLIYG 71

Query: 54  VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--------PVKTVPPQTIDKIV 105
            + V +AL +  R + +L  T    +RL +D    H           +  V P+ +D+I 
Sbjct: 72  RYPVLSALESH-RNLNRLWIT----SRLRYDPRFHHLVLQAKDNGTVIDEVDPKRLDQIT 126

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              A HQG+A + AP     L+ +       +  +++V D + DPHN+GAI+R+A A   
Sbjct: 127 -NGANHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVADGITDPHNLGAIIRTAEAIGA 185

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +R +   ++ + K A+GALE+    R+ NL+ AL+++   GF   G ++   +P
Sbjct: 186 QGLVIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESGFWIYGTAATGSEP 245

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L          L++G+EG+GL   TQ++   +  + + G   +LN S A  +ALY     
Sbjct: 246 LHSVRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTPSLNASVATGMALYEIYRQ 305

Query: 280 F 280
            
Sbjct: 306 R 306


>gi|33151509|ref|NP_872862.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|52783301|sp|Q7VP36|RLMB_HAEDU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33147729|gb|AAP95251.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 246

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 15/241 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDKIV 105
           +YG+H V+A L N   ++ ++   K    +     LD    L     V+ V  QT+D   
Sbjct: 5   IYGIHAVNAFLANAPERLIEVFVLKGREDKRLNPLLDELQRL--SISVQQVNRQTLDNKA 62

Query: 106 GKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             E VHQG+     P   L    L+ +   +++ LL++LD V DPHN+GA LR+A A   
Sbjct: 63  QGE-VHQGIIARIIPQKELNEYDLNELLQHKSNPLLLILDGVTDPHNLGACLRTADAAGV 121

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG-FQTIGLSSDSKK 218
           D +I  K  S + +A+  K A GA E +P IR++NL   ++++        +G + ++  
Sbjct: 122 DAVIVPKDKSATLTAIARKVACGAAEAMPLIRVTNLARTMRELQDKHQIWIVGTAGEATT 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        IAL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 182 DIYTSQLTGAIALVMGAEGDGMRRLTREHCDQLVSIPMAGSVSSLNVSVATGVCLFEIVR 241

Query: 279 H 279
            
Sbjct: 242 Q 242


>gi|322392209|ref|ZP_08065670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           peroris ATCC 700780]
 gi|321144744|gb|EFX40144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           peroris ATCC 700780]
          Length = 242

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELATEKKVSISWTSKKSLSEMTD 63

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 64  -GAVHQGFVLRVSEFAYSELDQILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V+AK+A+GA+EH+P  R++NL+  L K+   GF   G   +   P 
Sbjct: 123 GVIIPKHRSVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWIFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + KIALI+G EG+G+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTSGKIALIIGNEGRGISSNIKKQVDEMITIPMDGHVQSLNASVAAAILMYEVFRNR 241


>gi|303240980|ref|ZP_07327490.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
 gi|302591405|gb|EFL61143.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
          Length = 333

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 128/294 (43%), Gaps = 19/294 (6%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTVS 58
           ++ +E+             R  R   + + FN++       E          L G ++V 
Sbjct: 42  ERSNERPERSGGRPERSNERPERSSGRPERFNERPPRIENKEMEDLNEGLDKLEGRNSVL 101

Query: 59  AALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            A+ +  R I ++L +K       +            V+     ++DKI    + HQG+ 
Sbjct: 102 EAIKSD-RTINKILVSKGDKEGSIKQIIALAREKGIIVQETDRVSLDKISTTHS-HQGVI 159

Query: 116 LETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
              A      +D +         +  +++LD + DPHN+G+ILR+A A    G++  KR 
Sbjct: 160 AFVAVKDYVEVDDILEIAQSKGEAPFIIILDGITDPHNLGSILRTANAVGAHGVVIPKRR 219

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   +A ++K+++GA+E++P  R++N+   +  +       +G     +K   +      
Sbjct: 220 AIGLTAAVSKASAGAIEYVPVARVTNIAQTIDYLKEQNLWVVGTDQSGEKSFYEIDLKGP 279

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           IAL++G+EG+G+     E    + +L M G I +LN + A A+ +Y       K
Sbjct: 280 IALVIGSEGEGMGKLVSEKCDFVVNLPMKGQISSLNAAVAGAIVMYEILKQRGK 333


>gi|332971600|gb|EGK10550.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella kingae
           ATCC 23330]
          Length = 248

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 110/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H ++A L    + I +L   +N   A  R   +        +       ++ +  
Sbjct: 6   LIYGFHAINARLWQNPKSITELYVLENKADARTREVLEKAAAENVKLHFADQDRLNTMA- 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   LD +R    L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++   G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKECGIWVVGTDMGGDADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A ++G EG G+R  T+E   ++  + M G ++++N+S +A + L  T+   
Sbjct: 185 HYDIPQSVAWVMGNEGDGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQR 243


>gi|293365120|ref|ZP_06611837.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307702175|ref|ZP_07639135.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|291316570|gb|EFE57006.1| RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307624188|gb|EFO03165.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
          Length = 242

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+ + GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKAEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|21911205|ref|NP_665473.1| SpoU family tRNA/rRNA methyltransferase [Streptococcus pyogenes
           MGAS315]
 gi|28896582|ref|NP_802932.1| tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|21905417|gb|AAM80276.1| putative tRNA/rRNA methyltransferase, spoU family [Streptococcus
           pyogenes MGAS315]
 gi|28811836|dbj|BAC64765.1| putative tRNA/rRNA methyltransferase [Streptococcus pyogenes SSI-1]
          Length = 248

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLQANTGNKLYIQEDLRGKKVDNIKSLATQKKVAISWTPKKTLSQMTD 69

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             AVHQG  L  +      +D +        + L+++LD + DPHN+G+ILR+A A +  
Sbjct: 70  -GAVHQGFVLRVSAFAYTDVDEILEIAEQEANPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  S   + V++K+++GA+EHIP  R++NL+  L K+ + GF   G   +   P 
Sbjct: 129 GVIIPKHRSVCVTPVVSKTSTGAVEHIPIARVTNLSQTLDKLKARGFWIFGTDMNG-TPS 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    N K+AL++G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 188 DCWNTNGKLALVIGNEGKGISTNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|157963403|ref|YP_001503437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella pealeana
           ATCC 700345]
 gi|157848403|gb|ABV88902.1| RNA methyltransferase, TrmH family, group 3 [Shewanella pealeana
           ATCC 700345]
          Length = 246

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 10/238 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           +G+H V A L N   ++ ++   +    ARL     +       V+    + +D      
Sbjct: 8   FGLHAVEAVLKNSPERVIEMWVLQGRDDARLTPILAMAAEWGVSVQYASRKALDDK-SDG 66

Query: 109 AVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+  +  P   L    L A+        L++LD V DPHN+GA LR+A A    G+
Sbjct: 67  GQHQGIVAKVKPAKILSDNELSAMLEKTEVPFLLILDGVTDPHNLGACLRNADAAGVHGV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   + V++K A GA E +P  +++NL   ++ +   G   IG + ++   L Q
Sbjct: 127 IVPKDNSVGLTPVVSKVACGAAEVVPLYQVTNLARTMRSLQEKGIWIIGAAGEADCELYQ 186

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A+ +GAEGKGLR  ++E+  ++  + M G + +LNVS A  V L+      
Sbjct: 187 ASLTGPLAIAMGAEGKGLRRLSRESCDTLVSIPMAGSVSSLNVSVATGVCLFEAVRQR 244


>gi|313889615|ref|ZP_07823259.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122042|gb|EFR45137.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 248

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 9/239 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +     +  D        +   P +T+  +  
Sbjct: 10  NDMVYGVHAVTESLRANTGNKLYIQEDLRGKNVDIIKDLARNKKVSISWAPKKTLSDMT- 68

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      L+ +        + L+++LD + DPHN G+ILR+A A    
Sbjct: 69  EGAVHQGFVLRVSAFAYSELETLIVKAEKEENPLILILDGLTDPHNFGSILRTADATKVS 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+++GA+EH+P  R++NL+ AL K+   GF   G   D   P+
Sbjct: 129 GVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDKLKEAGFWIFGTDMDG-TPV 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   + K+ALI+G+EGKG+    ++    M  + M G +++LN   AAAV +Y    H
Sbjct: 188 QKWNTSGKLALIIGSEGKGISTNIKKQVDEMITIPMGGHVQSLNAGVAAAVLMYEVFRH 246


>gi|257875922|ref|ZP_05655575.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
 gi|257810088|gb|EEV38908.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
          Length = 279

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 20/280 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
            K + ++    K +  ++ R+ +R  ++ ++  +        E+ F++G H V+ AL   
Sbjct: 3   EKPQRKRPNK-KTAGRSEARQENRPDRRKEAAGE------AIEDNFVFGYHAVAEALKEG 55

Query: 65  SRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                +L  ++ A    + RL   A      PVK VP Q +D +   + VHQG+ L   P
Sbjct: 56  RG--NKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM-SNQGVHQGMILAITP 111

Query: 121 LLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               TLD +    +   L ++LD++ DPHN G+I+R+A A   DGII  K  +   + ++
Sbjct: 112 YQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIV 171

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            K+++GA+EHIP  R++NLT A+Q++   GF   G                 + LI+G E
Sbjct: 172 VKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGS-DYRTWNAQGAVGLIIGNE 230

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+G+    ++    M  + M G +++LN S AA + +Y  
Sbjct: 231 GRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQA 270


>gi|312862606|ref|ZP_07722847.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           vestibularis F0396]
 gi|311101866|gb|EFQ60068.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           vestibularis F0396]
          Length = 247

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L  N   K++     +                 +   P +
Sbjct: 2   KTTKETSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +      L  +        + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D   P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDG-TPSHKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|306825520|ref|ZP_07458860.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432458|gb|EFM35434.1| RNA methyltransferase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 242

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSKLDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|77409659|ref|ZP_00786329.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae COH1]
 gi|77413808|ref|ZP_00789988.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 515]
 gi|77160170|gb|EAO71301.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 515]
 gi|77171728|gb|EAO74927.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae COH1]
          Length = 251

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +   +  +  +YG+H V+ +L  N   K++     +                 +   P
Sbjct: 4   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            + +  +     VHQG  L+ +      L  +        + L+++LD + DPHN+G+IL
Sbjct: 64  KKILSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  L  +    F   G
Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +   P  +     K+AL++G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 183 TDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241

Query: 272 ALYITQNHF 280
            +Y    + 
Sbjct: 242 LMYEVFRNR 250


>gi|120600217|ref|YP_964791.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp.
           W3-18-1]
 gi|146291855|ref|YP_001182279.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           putrefaciens CN-32]
 gi|120560310|gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp.
           W3-18-1]
 gi|145563545|gb|ABP74480.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           putrefaciens CN-32]
          Length = 246

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL   A+    F   ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLADQAKAFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+         L    LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  V L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|225857083|ref|YP_002738594.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae P1031]
 gi|225725663|gb|ACO21515.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae P1031]
 gi|332074779|gb|EGI85253.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17545]
          Length = 242

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 9/236 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ +I  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEIT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y  
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEV 237


>gi|104774468|ref|YP_619448.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423549|emb|CAI98467.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 255

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 12/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L    S KI ++   +      AR  +         ++ VP  
Sbjct: 8   SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 67

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        + LL++LD++ DPHN+G+ILRS
Sbjct: 68  KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRS 126

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 127 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 186

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N K  L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 187 MEG-DDYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 245

Query: 274 YITQN 278
           Y   N
Sbjct: 246 YQAFN 250


>gi|315612889|ref|ZP_07887800.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
 gi|315314999|gb|EFU63040.1| RNA methyltransferase [Streptococcus sanguinis ATCC 49296]
          Length = 242

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKRVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|270293024|ref|ZP_06199235.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
 gi|270279003|gb|EFA24849.1| RNA methyltransferase, TrmH family protein [Streptococcus sp. M143]
          Length = 253

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQDDLRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      L+ +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYSELEHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 252


>gi|329114437|ref|ZP_08243199.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
           pomorum DM001]
 gi|326696513|gb|EGE48192.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acetobacter
           pomorum DM001]
          Length = 318

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 103/274 (37%), Positives = 150/274 (54%), Gaps = 7/274 (2%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
              +F  +  H    RR     +   +  ++   ++     +L+G H V+AALNNP R  
Sbjct: 34  RNCVFMRQPRHGRSARRP----RVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVY 89

Query: 69  FQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            +LL T+     L+          V  + V  Q +D ++G +AVHQG+AL    L    L
Sbjct: 90  ERLLVTEENHPALEEATRSGRNVRVTPELVQRQRLDDLLGPDAVHQGVALLARILPPMPL 149

Query: 127 D-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           D A+     ++VLD V DP NIGAILRSA AF    ++   R +P E+AVLAK+ASGALE
Sbjct: 150 DEALERPGPVLVLDQVTDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALE 209

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P +R  NL+ A++++   G  T+GL +             ++AL+LGAEGKGLR  T+
Sbjct: 210 TVPMVREVNLSRAIEQLQKAGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTR 269

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E+   +A L+MPG +++LNVS AAAV LY     
Sbjct: 270 ESCDEIAGLYMPGEMESLNVSVAAAVGLYELMRR 303


>gi|253577160|ref|ZP_04854480.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843404|gb|EES71432.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 250

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 14/247 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTID 102
            E  ++ G H++  AL +  R I ++   + A   L          H   V+ V  + +D
Sbjct: 2   EEQEWIGGKHSLLEAL-HAGRTINKIWVAEGAQKHLTQPIVAEAKKHGIVVQFVDKRKLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++      HQG+  + AP     +D +            L++LD + DPHN+G+ILR+A 
Sbjct: 61  QMA-PGLQHQGVVAQVAPYAYAEVDDLLARAQERGEPPFLLILDEIEDPHNLGSILRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  KR S + +A ++K+++GA+E++P  R++NL   ++++   G   +G    
Sbjct: 120 CTGVHGVIIPKRRSAAVTATVSKTSAGAVEYVPVARVTNLVQTMEQLKEAGVWIVGTDVG 179

Query: 216 SKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +K+ + +   +    +A+++G E KG+    +ET   +  L M G + +LN S AA V +
Sbjct: 180 AKEEMYRSGNVLTGPVAIVIGNENKGMGRLVRETCDVLVKLPMNGRLNSLNASVAAGVIM 239

Query: 274 YITQNHF 280
           Y      
Sbjct: 240 YEVLRRR 246


>gi|319943471|ref|ZP_08017753.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
           mirabilis ATCC 51599]
 gi|319743286|gb|EFV95691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lautropia
           mirabilis ATCC 51599]
          Length = 247

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 12/243 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105
           + LYG H V A L         L   ++      R            V  V    +D++ 
Sbjct: 1   MLLYGFHAVMARLRQAPASFKSLYVDRHRDDNRVRDLLKLAQQQAVQVTRVEAGRLDRMA 60

Query: 106 GKEAVHQGLALETA--------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           G    HQG+  +          P L   L+       L++LD V DP N+GA LRSA   
Sbjct: 61  G-GKRHQGVVAQVETQTISTDLPTLLSDLEGRERPPFLLLLDGVTDPRNLGACLRSADGA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  K ++   + V   +ASGA E +PYI ++NL   ++++   GF+  GL+ ++ 
Sbjct: 120 GVDAVIAPKDHAAPLTDVAMHTASGAGESVPYILVTNLVRTVEQLQDAGFRVYGLADEAD 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L +      +A+++GAE KGLR   +E   ++  + M G + +LNVS A  V LY   
Sbjct: 180 ADLYRTDFAGPVAIVMGAEDKGLRRLVREQCDALVSIPMMGSVSSLNVSVATGVVLYEVL 239

Query: 278 NHF 280
              
Sbjct: 240 RQR 242


>gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio
           salmonicida LFI1238]
 gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio
           salmonicida LFI1238]
          Length = 247

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 10/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKI 104
           N FL+G+H   A L     +  ++   K     RL           F ++ +P +T+D  
Sbjct: 3   NEFLFGIHATKAVLERDPARFIEIFVLKGREDDRLLPIITELGELGFKIQELPRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQG+     P   L    LD +     + L +VLD V DPHN+GA LR+A    
Sbjct: 63  A-KGANHQGIIARVTPAKQLNERDLDDIMDKTENPLFLVLDGVTDPHNLGACLRNADGAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S S +A ++K A GA E +P +R++NL   ++ +   G   +G + ++ K
Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAEMVPLVRVTNLARTMRALQEKGVWFVGTAGEATK 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ V L+    
Sbjct: 182 DVFQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVTSLNVSVASGVCLFEAVR 241

Query: 279 HFA 281
             +
Sbjct: 242 QRS 244


>gi|127514216|ref|YP_001095413.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella loihica
           PV-4]
 gi|126639511|gb|ABO25154.1| RNA methyltransferase, TrmH family, group 3 [Shewanella loihica
           PV-4]
          Length = 246

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQTID 102
            +  F +G+H V A L N   ++ ++   +     RL     +   +   V+    + +D
Sbjct: 2   KKQDFTFGIHAVEALLKNSPERVIEMWVLQGRDDQRLMPLIAMAAEYGVSVQQASRKALD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVA 156
              G  + HQG+ +   P      + +        +  L++LD V DPHN+GA LR+A A
Sbjct: 62  DKAGS-SQHQGVLVRAKPAKQLNDNDLLALLDKTETPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKALQEKGVWIVGAAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  L +      IA+ +GAE KGLR  T+E+  S+A + M G + +LNVS A  + L+  
Sbjct: 181 EHDLYKADLKGPIAIAMGAEDKGLRRLTRESCDSLASIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|149007272|ref|ZP_01830930.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|307126973|ref|YP_003879004.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 670-6B]
 gi|147761076|gb|EDK68044.1| pyridoxine biosynthesis protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484035|gb|ADM90904.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           pneumoniae 670-6B]
          Length = 242

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDYILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL   L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLNQTLYKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|322374192|ref|ZP_08048725.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C150]
 gi|321276897|gb|EFX53969.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus sp.
           C150]
          Length = 247

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L  N   K++     +                 +   P +
Sbjct: 2   KTTKESSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +      L  +        + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSELSDIMDKVEQEENPLILILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWIFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D   P  +     ++ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDG-TPSHKWNTAGRLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|306829232|ref|ZP_07462422.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304428318|gb|EFM31408.1| RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 242

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDIRGKNVEKVKELAAEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 63  EGAVHQGFVLRVSEFAYSELDHILAKTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 123 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +     KIALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 182 HKWNTKGKIALIIGNEGKGISSNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 241


>gi|54293055|ref|YP_125470.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
 gi|53752887|emb|CAH14322.1| hypothetical protein lpl0092 [Legionella pneumophila str. Lens]
          Length = 249

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ + +   +  +       P++ +  Q +++   
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLIKAENAHVPIEKLSAQKMNQQFS 64

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+    + L           L+  +   L+++LD + DPHN+GA LRSA A   
Sbjct: 65  -EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  K  S S + V++K A GA E IP +R++NL  A+  +   G    G + +++  
Sbjct: 124 DFVLIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHL 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY     
Sbjct: 184 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 243

Query: 280 FAK 282
             +
Sbjct: 244 RGQ 246


>gi|218661645|ref|ZP_03517575.1| tRNA/rRNA methyltransferase protein [Rhizobium etli IE4771]
          Length = 254

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 129/225 (57%), Positives = 164/225 (72%), Gaps = 1/225 (0%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
              P+    YG+HTV AAL+NP RK  +L  T+NALARL+ D         + V P  ID
Sbjct: 16  ARAPDQGLSYGLHTVRAALDNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEID 74

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           K++G EA+HQG+ LET PL    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +
Sbjct: 75  KVLGPEAIHQGVMLETRPLPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAV 134

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           ITT+R+SP+ES VLAKSASGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE 
Sbjct: 135 ITTQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEG 194

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               DK+AL+LG+EGKGLR KT+ET T++A L MPG IK+LNVSN
Sbjct: 195 TFSGDKVALVLGSEGKGLRQKTRETVTALARLDMPGAIKSLNVSN 239


>gi|254413736|ref|ZP_05027505.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179333|gb|EDX74328.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 328

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 129/289 (44%), Gaps = 24/289 (8%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-----------LFLYGVHTVSAALN 62
             + S   K  R+ R   K     +     S PE              LYG H V AAL 
Sbjct: 23  QRRPSSKGKFSRDQRSPDKPVLKRRYDPQPSPPEPTESESTLSEDVDLLYGRHPVLAALE 82

Query: 63  NPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           N  R++ ++        +            +   +  V  + + ++  + A HQG+A + 
Sbjct: 83  N-QRQLNRVWILPQLRYDHRFHSLLLQAKANGTVIDEVDSRRLSQVT-QGANHQGVAAQV 140

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           AP     L  +           +++V D + DPHN+GAI+R+A A    G++  +R +  
Sbjct: 141 APYSYKELGDLIKAAKSTSQYPVIVVCDGITDPHNLGAIIRTAEALGAQGLVIPQRRAVG 200

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            ++ + K A+GALE +P  R+ NL+ AL+++ + GF   G  +D+ K L     N  I L
Sbjct: 201 VTSTVMKVAAGALETLPIARVVNLSRALEELKTAGFWIYGTCADAGKLLHTVDLNGSIVL 260

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G+EG GL   TQ     +  + + G   +LN S AAA+ LY T    
Sbjct: 261 VIGSEGSGLSLLTQRCCDVLVSIPLYGKTPSLNASVAAAMTLYETYRQR 309


>gi|319425089|gb|ADV53163.1| RNA methyltransferase, TrmH family, group 3 [Shewanella
           putrefaciens 200]
          Length = 246

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL   A     F   ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLAEQAKVFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+         L    LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  V L+  
Sbjct: 181 DCELYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|227082715|ref|YP_002811266.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           BX 330286]
 gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           B33]
 gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC9]
 gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae
           MJ-1236]
 gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
           MO10]
 gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
           CIRS 101]
 gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           INDRE 91/1]
 gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
           757]
 gi|52783330|sp|Q9KNY2|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           RC9]
 gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           B33]
 gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           BX 330286]
 gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           MJ-1236]
 gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
           MO10]
 gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
           CIRS 101]
 gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
           INDRE 91/1]
 gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
           757]
          Length = 247

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N  +     ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P   L    LD +       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+    
Sbjct: 182 DIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|307608839|emb|CBW98231.1| hypothetical protein LPW_00911 [Legionella pneumophila 130b]
          Length = 249

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ + +   +  +       P++ +  Q +++   
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLIKAENAHVPIEKLSAQKMNQQFS 64

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+    + L           L+  +   L+++LD + DPHN+GA LRSA A   
Sbjct: 65  -EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  K  S S + V++K A GA E IP +R++NL  A+  +   G    G + +++  
Sbjct: 124 DFVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHL 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY     
Sbjct: 184 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 243

Query: 280 FAK 282
             +
Sbjct: 244 RGQ 246


>gi|224824690|ref|ZP_03697797.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
           2002]
 gi|224603183|gb|EEG09359.1| RNA methyltransferase, TrmH family, group 3 [Lutiella nitroferrum
           2002]
          Length = 251

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H V+A L    + + ++      ++A A+   D        +  V    +D + G
Sbjct: 6   LIHGFHAVNARLWQNPKSLLEIWLAGGRQDARAQAVLDKAAAENIKLHIVDKARLDSMSG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+            L   L+ +    LL++LD V DPHN+GA LR A A     
Sbjct: 66  -NARHQGVVAMIDASRSYVSLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S + +A ++K A GA E +PYI ++NL   L+ +   G    G + ++   L 
Sbjct: 125 VIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A ++G+EG+G+R  T+E    +  + M G +++LNVS ++ + L  ++   
Sbjct: 185 HFDAAGPLAWVMGSEGEGMRRLTREHCDVLVSIPMFGSVESLNVSVSSGMVLSESRRQR 243


>gi|25010279|ref|NP_734674.1| hypothetical protein gbs0204 [Streptococcus agalactiae NEM316]
 gi|23094631|emb|CAD45849.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 249

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 118/249 (47%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +   +  +  +YG+H V+ +L  N   K++     +                 +   P
Sbjct: 2   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            + +  +     VHQG  L+ +      L  +        + L+++LD + DPHN+G+IL
Sbjct: 62  KKILSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  L  +    F   G
Sbjct: 121 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFG 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +   P  +     K+AL++G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 181 TDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 239

Query: 272 ALYITQNHF 280
            +Y    + 
Sbjct: 240 LMYEVFRNR 248


>gi|212633586|ref|YP_002310111.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           piezotolerans WP3]
 gi|212555070|gb|ACJ27524.1| RNA methyltransferase TrmH, group 3 [Shewanella piezotolerans WP3]
          Length = 247

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 13/248 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102
            +    +G+H V A L N   ++ ++   +     RL     +       V+    + +D
Sbjct: 2   KKQDITFGLHAVEAVLQNSPERVIEIWVLQGRDDKRLIPILEIASQWGVSVQYASRKALD 61

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                   HQG+  +           L   LD    +  L++LD V DPHN+GA LR+A 
Sbjct: 62  DKSA-GGQHQGVVAKVKAAKILNDNDLHAMLDGT-ETPFLLILDGVTDPHNLGACLRNAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  K  S   + V++K A GA E +P  +++NL   ++ +   G    G + +
Sbjct: 120 AAGVQGIIVPKDNSVGLTPVVSKVACGAAEIVPLYQVTNLARTMRSLQDKGIWIAGAAGE 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +   + Q      +A+ +GAEGKGLR  T+E+  S+  + M G + +LNVS A  + L+ 
Sbjct: 180 ADSDVYQASLTGPLAIAMGAEGKGLRRLTRESCDSLISIPMAGSVSSLNVSVATGICLFE 239

Query: 276 T-QNHFAK 282
             +   AK
Sbjct: 240 AVRQRLAK 247


>gi|22536393|ref|NP_687244.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76787268|ref|YP_328940.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|76799582|ref|ZP_00781707.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 18RS21]
 gi|77405353|ref|ZP_00782448.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
 gi|77410962|ref|ZP_00787318.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae CJB111]
 gi|22533220|gb|AAM99116.1|AE014201_14 RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 2603V/R]
 gi|76562325|gb|ABA44909.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|76585065|gb|EAO61698.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae 18RS21]
 gi|77163017|gb|EAO73972.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae CJB111]
 gi|77176031|gb|EAO78805.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
          Length = 251

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +   +  +  +YG+H V+ +L  N   K++     +                 +   P
Sbjct: 4   KDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            +T+  +     VHQG  L+ +      L  +        + L+++LD + DPHN+G+IL
Sbjct: 64  KKTLSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSIL 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A +  GII  K  S   + V++K+++GA+EH+P  R++NL+  L  +    F   G
Sbjct: 123 RTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDTLKDKEFWIFG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +   P  +     K+AL++G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 183 TDMNG-TPSHKWNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAI 241

Query: 272 ALYITQNHF 280
            +Y    + 
Sbjct: 242 LMYEVFRNR 250


>gi|90020702|ref|YP_526529.1| tyrosyl-tRNA synthetase, class Ib [Saccharophagus degradans 2-40]
 gi|89950302|gb|ABD80317.1| RNA methyltransferase TrmH, group 3 [Saccharophagus degradans 2-40]
          Length = 248

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 11/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQT--IDK 103
           +   ++G+H V + L    ++I ++   +    AR+    +      +K +P     +D 
Sbjct: 3   KQEIIFGLHAVQSLLKASPQRIQEIWIVRGRQDARVQKVLSAAQAAGIKVLPQDKKSMDS 62

Query: 104 IVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   +  HQG+              L P ++A+    L++VLD V DPHN+GA LRSA A
Sbjct: 63  VSA-DGNHQGVLAYAKEGQSYTENDLYPLIEAIEGDPLIVVLDGVTDPHNLGACLRSADA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S   + V  K A GA +++P I ++NL   L+KM   G    G + D+
Sbjct: 122 AGAHALIVPKDNSVGLTEVARKVACGAADNVPLIVVTNLARCLKKMQEQGLWVAGTTGDT 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K +          +++GAEG G+R  T ET   +  + M G + +LNVS A  V L+  
Sbjct: 182 DKSIYDVDLTGPRVIVMGAEGTGMRRLTTETCDDLVKIPMLGSVTSLNVSVATGVVLFEV 241

Query: 277 QNHF 280
               
Sbjct: 242 VRQR 245


>gi|300811853|ref|ZP_07092319.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497172|gb|EFK32228.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 255

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 12/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L    S KI ++   +      AR  +         ++ VP  
Sbjct: 8   SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 67

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        +  L++LD++ DPHN+G+ILRS
Sbjct: 68  KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLGQEEAPFLLMLDNIEDPHNLGSILRS 126

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 127 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 186

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N KI L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 187 MEG-DDYRKWNANGKIVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 245

Query: 274 YITQN 278
           Y   N
Sbjct: 246 YQAFN 250


>gi|116514573|ref|YP_813479.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093888|gb|ABJ59041.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 249

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 12/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L    S KI ++   +      AR  +         ++ VP  
Sbjct: 2   SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        +  L++LD++ DPHN+G+ILRS
Sbjct: 62  KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPFLLMLDNIEDPHNLGSILRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N K  L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 181 MEG-DDYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239

Query: 274 YITQN 278
           Y   N
Sbjct: 240 YQAFN 244


>gi|322386796|ref|ZP_08060420.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           cristatus ATCC 51100]
 gi|321269078|gb|EFX52014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Streptococcus
           cristatus ATCC 51100]
          Length = 243

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVSKIKDLAAAKKVSISWSPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  +      L  V        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVSEFAYADLADVLKKAEQEENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P+ +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PVHKWNTAGKLALIIGNEGKGISSNIKKQVDEMLTIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|251793952|ref|YP_003008684.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535351|gb|ACS98597.1| RNA methyltransferase, TrmH family, group 3 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 245

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 11/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A + +   ++ ++LA K     RL    N        V+ +  QT+DK    
Sbjct: 5   IYGIHAVKAFVTHYPERLIEVLALKGRDDQRLQLLINEIQRLGISVQFLNRQTLDKKAEG 64

Query: 108 EAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A   + 
Sbjct: 65  E-VHQGIIARVHSLPELNEHDLDLLLEQQKAPLLLVLDGVTDPHNLGACLRTADAAGVNA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I TK  S   ++   K A GA E++P IR++NL   L+++        +G + ++ + L
Sbjct: 124 VIVTKDKSAQLNSTARKVACGAAENVPLIRVTNLARTLRELQKRHNVWVVGTAGETTETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTKLTGALALVMGAEGEGMRRLTREHCDQLISIPMMGSVSSLNVSVATGVCLFEIVRQR 243

Query: 281 AK 282
            K
Sbjct: 244 LK 245


>gi|325126286|gb|ADY85616.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 249

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 12/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQ 99
           S   N F++G H     L    S KI ++   +      AR  +         ++ VP  
Sbjct: 2   SSTNNDFVFGRHAGIDFLKTQDSEKINKVFLAEGVQEDFAREVYRYAKKKHLIIQRVPKN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +DK+ G E  HQGL L  A       D +        + LL++LD++ DPHN+G+ILRS
Sbjct: 62  KLDKLTGGE-NHQGLVLAVASFEYADFDQLLDKLDQEEAPLLLMLDNIEDPHNLGSILRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR +   ++V+AK+++GA++H+P  R++NL    Q +   G+   G +
Sbjct: 121 ADATGVSGVIIPKRRASGLTSVVAKTSTGAIDHVPVARVNNLVQTCQALKDRGYWIFGTA 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +      +   N K  L++G EGKG+ P   +       + M G +++LN S A  V L
Sbjct: 181 MEG-DDYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMIGHVQSLNASVATGVLL 239

Query: 274 YITQN 278
           Y   N
Sbjct: 240 YQAFN 244


>gi|311029029|ref|ZP_07707119.1| 23S rRNA methyltransferase [Bacillus sp. m3-13]
          Length = 249

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 13/243 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTID 102
            E  F+ G + V  AL +  R+I +L   +       +            V+ VP + ID
Sbjct: 3   KEKEFIMGRNPVLEALKSN-REINKLWIAEGGQKGSIQQVIAMAKEANVLVQFVPRKKID 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V  E  HQG+    A      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--EGNHQGVVASVAAYDYAELDDLYKAAEQRNEDPFFLILDEIEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR +   +A +AKS++GA+EHIP +R++NL   + ++   G    G  + 
Sbjct: 120 AVGAHGIIIPKRRAVGLTATVAKSSTGAIEHIPVVRVTNLARTVDELKERGLWIFGTDAK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +   +  + LI+G+EGKG+    +E    +  L M G + +LN S AA++ +Y 
Sbjct: 180 GTVDYTKMDGSLPLGLIIGSEGKGMARLLKEKCDFLVSLPMVGKVTSLNASVAASLLMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VFR 242


>gi|222152461|ref|YP_002561636.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113272|emb|CAR40803.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
          Length = 251

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 10/248 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +H  Q     +YGVH V+ +LN N   K++     +                 +   P
Sbjct: 5   KDKHL-QETTDMVYGVHAVTESLNANTGNKLYIQEDLRGKNVDAIKALATEKKVSISWTP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            +T+ ++  + AVHQG  L  +      L  +        + L+M+LD + DPHN G+IL
Sbjct: 64  KKTLSEMT-EGAVHQGFVLRVSEYAYAELADILKKAESEENPLIMILDGITDPHNFGSIL 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    GII  K  +   + V++K+++GA+EH+P  R++NL+  L K+   GF   G
Sbjct: 123 RTADATKVCGIIIPKHRAVGVTPVVSKTSTGAVEHLPIARVTNLSQTLDKLKEAGFWIFG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D   P+++   + K+ALI+G+EGKG+    ++    M  + M G +++LN S AAAV
Sbjct: 183 TDMDG-TPVQKWNTSGKLALIIGSEGKGISHNIKKQVDEMITIPMDGHVQSLNASVAAAV 241

Query: 272 ALYITQNH 279
            +Y    +
Sbjct: 242 LMYEVFRN 249


>gi|189424926|ref|YP_001952103.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
 gi|189421185|gb|ACD95583.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
          Length = 246

 Score =  254 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLP--HPFPVKTVPPQTIDK 103
           +   LYG++ V  AL   +RK F+L   T     R+   A L       V+      +++
Sbjct: 2   KEDILYGINPVREALR-GNRKAFELFVQTGGTDQRIAKLATLAEEKGIAVRRRERADLER 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G    HQG+ L+ AP +   L+              L+VLD + DP N+GA++RSA  
Sbjct: 61  LAG-NPHHQGVVLKVAPFIYAELEDFLANHQESEGGMFLLVLDRIQDPQNLGALIRSAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  K  +   + V+ K+++GA+E IP I+++NL   L+++   G    GL+ ++
Sbjct: 120 AGVQGVIIPKDRACGMTPVVEKASAGAVETIPVIQVTNLVQTLERLKQAGCWIFGLAGEA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K + Q      +AL++G+EG+G+RP  ++    +  +   G I +LN S A  + L+  
Sbjct: 180 NKDIYQADYRGNLALVVGSEGEGIRPLVRKHCDLLLAIPHYGGISSLNASVAGGIVLFEA 239

Query: 277 QNHF 280
               
Sbjct: 240 ARQR 243


>gi|54296089|ref|YP_122458.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
 gi|53749874|emb|CAH11255.1| hypothetical protein lpp0107 [Legionella pneumophila str. Paris]
          Length = 249

 Score =  254 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ + +   +  +       P++ +  Q +++   
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSSQKMNQQFS 64

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+    + L           L+  +   L+++LD + DPHN+GA LRSA A   
Sbjct: 65  -EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  K  S + + V++K A GA E IP +R++NL  A+  +   G    G + +++  
Sbjct: 124 DFVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHL 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY     
Sbjct: 184 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 243

Query: 280 FAK 282
             +
Sbjct: 244 RGQ 246


>gi|38234534|ref|NP_940301.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae]
          Length = 313

 Score =  254 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/278 (26%), Positives = 138/278 (49%), Gaps = 17/278 (6%)

Query: 18  SHYAKLRRNHRDYKKM--QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73
           +  A+ R  H  YKK   +    + RH  +  +  + G + V   L+   P+  ++ +  
Sbjct: 37  TPKAEDREYHAAYKKKMERKRRDQGRHVKEETSELVVGRNPVVECLHAKVPATTLYIVEG 96

Query: 74  TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT------ 125
           TKN   RL     + H    P+  VP   +D + G   +HQG+ L+  P    T      
Sbjct: 97  TKN-DNRLSEAVQIAHSRGIPMIEVPRHEMDLMTG-NGMHQGIGLQIPPYKYTTVFDLIG 154

Query: 126 -LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            +++     +++VLD++ DP N+GA++RS  AF   G++  +R S S +AV  ++++G  
Sbjct: 155 RINSTGEDGMVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTA 214

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P  + +N+T A+Q+    G+Q +GL +     L+    +  + +++G+EGKG+    
Sbjct: 215 ARLPVAKATNITRAVQEFQQNGYQVVGLDAGGDATLDNYDGSGPVVIVVGSEGKGISRLV 274

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280
           ++   S+  + M G +++LN S AA V L  +  Q   
Sbjct: 275 RDNCDSLMSIPMAGWVESLNASVAAGVVLSEFARQRRL 312


>gi|152979716|ref|YP_001345345.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Actinobacillus
           succinogenes 130Z]
 gi|150841439|gb|ABR75410.1| RNA methyltransferase, TrmH family, group 3 [Actinobacillus
           succinogenes 130Z]
          Length = 245

 Score =  254 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V + L      + ++ A K     RL    N  H     V+ +  QT+D     
Sbjct: 5   IYGIHAVKSFLERTPELVVEVYALKGRDDKRLQPLLNELHNLGISVQFLNRQTLDNKAHG 64

Query: 108 EAVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P   L    LD + N   + LL+VLD V DPHN+GA LR+A A   D 
Sbjct: 65  E-VHQGIIARVQPAKELNESDLDNILNGKPNPLLLVLDGVTDPHNLGACLRTADAAGVDA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL 220
           +I  K  S   +++  K A GA E +P IR++NL   L+ +        +G + ++ + L
Sbjct: 124 VIVPKDKSAQLTSIARKVACGAAEVLPLIRVTNLARTLRDIQQSHNIWVVGTAGEASETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q      +AL++GAEG G+R  T+E    +  + M G + +LNVS A  V L+      
Sbjct: 184 YQTELTGSLALVMGAEGDGMRRLTRECCDQLISIPMAGSVSSLNVSVATGVCLFEIVRQR 243


>gi|323126494|gb|ADX23791.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 248

 Score =  254 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 125/240 (52%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +       ++ L+++LD + DPHN+G+ILR+A A +  
Sbjct: 69  EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V++K+++GA+EH+P  R++NL+  L K+ + GF T G   +   P 
Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVPIARVTNLSQTLDKLKAKGFWTFGTDMNG-TPS 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 188 HRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 311

 Score =  254 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 100/289 (34%), Positives = 156/289 (53%), Gaps = 15/289 (5%)

Query: 5   SKKKSEKIFSL---KDSHYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           S++++E+  +    +  H A  R++  D   + +    K         + LYG+H V+AA
Sbjct: 20  SERQAERTGAKPQHQPQHGAASRQDQTDDAGRGRRGATKGGRAPAARGVLLYGLHPVAAA 79

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT-----VPPQTIDKIVGKEAVHQGLA 115
             NP R+I +LL T +  A L+          ++           +D+++   AVHQG+ 
Sbjct: 80  WTNPERRIHRLLVTDSGRAALEPVIAEARARGLQRPEASPADRVELDRMLPPGAVHQGIV 139

Query: 116 LETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           ++ +PL    ++ + N      S +++ LD V DPHN+GAILRSA AF    ++ T+R++
Sbjct: 140 IDASPLPELGIEDLCNELASEPSAVIVALDQVTDPHNVGAILRSAAAFGARAVVVTERHA 199

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P  + VLAKSASGALE +P +R++NL  AL  +   GF ++GL+      L +     K 
Sbjct: 200 PETTGVLAKSASGALEAVPLVRVTNLARALTDLQQNGFWSVGLAESGPSTLAKLDLTGKT 259

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L++GAEG GLR  T E   ++A L   G + +LNVSNAAAVALY    
Sbjct: 260 VLVMGAEGSGLRRLTMERCDAIARLPTGGPVGSLNVSNAAAVALYEVAR 308


>gi|113460298|ref|YP_718358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
           129PT]
 gi|170718084|ref|YP_001783373.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus somnus
           2336]
 gi|112822341|gb|ABI24430.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Haemophilus somnus 129PT]
 gi|168826213|gb|ACA31584.1| RNA methyltransferase, TrmH family, group 3 [Haemophilus somnus
           2336]
          Length = 245

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           +YG+H V A L N   ++ ++   K     RL    N  +     V+ +   T+DK    
Sbjct: 5   IYGIHAVQAFLINAPERLIEVYVLKGREDKRLQSVLNELYKLGISVQFLNRDTLDKKANG 64

Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+     P      + +      + + LL+VLD + DPHN+GA LRSA A     
Sbjct: 65  E-VHQGIIARVQPAKELNENDLVEILQKKANPLLLVLDGITDPHNLGACLRSADAAGVCA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPL 220
           +I  K  S   +A+  K A GA E +P +R++NL   L+ +        +G + ++ + L
Sbjct: 124 VIVPKDKSAQLTAIARKVACGAAEVVPLVRVTNLARTLRDLQQQHNIWVVGTAGEAIETL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +AL++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+      
Sbjct: 184 YEAKLTGGLALVMGAEGDGMRRLTRETCDQLISIPMAGSVSSLNVSVATGICLFEIVRQR 243


>gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           B1 str. Okra]
          Length = 257

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 112/256 (43%), Gaps = 14/256 (5%)

Query: 39  KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93
           K+R   Q E     + G + V  AL +    I +++  K  L    ++           +
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             V  + +D I    A HQG+   T P     ++ +            +++LD + DPHN
Sbjct: 61  NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+ILR+A      G+I  KR +   +  + K+++GA+E++   +++N+ + + K+   G
Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G              +  IAL++G+EG+G+   T+    ++  + M G I +LN S
Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDALVKIPMFGNITSLNAS 239

Query: 267 NAAAVALYITQNHFAK 282
            A  + +Y       K
Sbjct: 240 VAGGMLMYEILKQRMK 255


>gi|51894250|ref|YP_076941.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51857939|dbj|BAD42097.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 246

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL +  R I ++L  K A     R            V+ V  + +D +  +
Sbjct: 5   IEGRNPVLEALRSG-RTINRILVAKGAREGSIREVIALARSQGVIVQEVARERLDAMA-R 62

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    A      LD V           LL+VLD + DP N+G++LR+A A    
Sbjct: 63  GRNHQGVIALAAAHRYYDLDEVLERAAASGEDGLLLVLDGIEDPQNLGSLLRTADAAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R +   +  +AK ++GA+E++P  R++N+   L+ +   G+  +G   ++ +  
Sbjct: 123 GVIIPERRAVGLTETVAKVSAGAVEYVPVARVTNIARTLEMLKERGYWVVGTHQEADELY 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +A+++G+EG+G+     ET      L M G + +LN + A A+ LY  +   
Sbjct: 183 YEARLTGPLAVVIGSEGRGMSRLVAETCDFTVRLPMRGHVTSLNAAVAGAILLYEVRRQR 242

Query: 281 A 281
           +
Sbjct: 243 S 243


>gi|257866303|ref|ZP_05645956.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257873181|ref|ZP_05652834.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
 gi|257800261|gb|EEV29289.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257807345|gb|EEV36167.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
          Length = 279

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 132/280 (47%), Gaps = 20/280 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
            K + ++            + N  D +K  +           E+ F++G H V+ AL   
Sbjct: 3   EKPQRKRPNKKTAGRSEARQENKPDRRKEAA-------GEAIEDNFVFGYHAVAEALKEG 55

Query: 65  SRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                +L  ++ A    + RL   A      PVK VP Q +D +   + VHQG+ L   P
Sbjct: 56  RG--NKLFLSEEARGEKIDRLKEMAR-EQAVPVKWVPKQKLDTM-SDQGVHQGMILAITP 111

Query: 121 LLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               TLD +    +   L ++LD++ DPHN G+I+R+A A   DGII  K  +   + ++
Sbjct: 112 YQYLTLDELLAQTKEQPLYLILDNLEDPHNFGSIMRTADASGVDGIIIPKHRAVGITPIV 171

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            K+++GA+EHIP  R++NLT A+Q++   GF   G                 + LI+G E
Sbjct: 172 VKTSTGAVEHIPVARVTNLTQAVQQLKKAGFWIFGTDMSGS-DYRTWNAQGAVGLIIGNE 230

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+G+    ++    M  + M G +++LN S AA + +Y  
Sbjct: 231 GRGMGEGLKKEVDQMLTIPMTGHVQSLNASVAAGLLMYQA 270


>gi|261417588|ref|YP_003251270.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC61]
 gi|297528463|ref|YP_003669738.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           C56-T3]
 gi|319765246|ref|YP_004130747.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC52]
 gi|261374045|gb|ACX76788.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC61]
 gi|297251715|gb|ADI25161.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           C56-T3]
 gi|317110112|gb|ADU92604.1| RNA methyltransferase, TrmH family, group 3 [Geobacillus sp.
           Y412MC52]
          Length = 246

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 17/242 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDK 103
            ++ G + V  AL    R I ++   + A        L+W         V+ VP + +D+
Sbjct: 3   DYIIGKNPVIEALK-AGRDINKIWIAEGAQRHTVEPVLEWAKR--RGVLVQYVPKRKLDQ 59

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   E  HQG+  + A      +D +         +   ++LD + DPHN+GAI+R+A A
Sbjct: 60  MA--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPHNLGAIMRTADA 117

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR S   +  +AK+++GA+EH+P  R++NL   + ++   G    G  + +
Sbjct: 118 VGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKERGVWVAGTDASA 177

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +           +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y  
Sbjct: 178 QDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEV 237

Query: 277 QN 278
             
Sbjct: 238 YR 239


>gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
 gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X561]
 gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513]
 gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X514]
 gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X561]
 gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
           X513]
          Length = 247

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   ++G + V  A+ +    I ++  +K A   +    N        V T    T+ +
Sbjct: 2   EEQNVIFGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINFAKEAGIVVSTTDNDTLSE 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G    HQG+   +A      +D +       +    L++LD + DPHN+GAI+RSA A
Sbjct: 61  LAGSR-NHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAIIRSAEA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   ++
Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVGTDVNA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +K  E+   +  +A ++G EGKG+     +    +  + M G I +LN S AA++ +Y  
Sbjct: 180 EKSFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239


>gi|52840348|ref|YP_094147.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627459|gb|AAU26200.1| tRNA/rRNA methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 258

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ + +   +  +       P++ +  Q +++   
Sbjct: 14  YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSAQKMNQQFS 73

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+    + L       L   L+  +   L+++LD + DPHN+GA LRSA A   
Sbjct: 74  -EFTHQGVVALASALAEYGESDLVTLLEKSKKPVLILILDGITDPHNLGACLRSADATGV 132

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  K  S S + V++K A GA E IP +R++NL  A+  +   G    G + +++  
Sbjct: 133 DFVVIPKDKSASITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAENL 192

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY     
Sbjct: 193 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 252

Query: 280 FAK 282
             +
Sbjct: 253 RGQ 255


>gi|322517687|ref|ZP_08070550.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123675|gb|EFX95267.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 247

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L  N   K++     +                 +   P +
Sbjct: 2   KTTKESSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +         +        + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSDFSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKESGFWVFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D   P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDG-TPSHKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|217971920|ref|YP_002356671.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica
           OS223]
 gi|217497055|gb|ACK45248.1| RNA methyltransferase, TrmH family, group 3 [Shewanella baltica
           OS223]
          Length = 246

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFP--VKTVPPQTID 102
            +   ++G+H V A L +   +I +L   +     RL   AN    F   ++    + +D
Sbjct: 2   KKQDIIFGIHAVEALLKHSPERIIELWLLQGRDDERLTVLANQAKAFGTTIQVASRKALD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVA 156
               + + HQG+         L    LD +        L++LD V DPHN+GA LR+A A
Sbjct: 62  DKA-ESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVQGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L Q      +A+ +GAE KGLR  ++E+  S+  + M G + +LNVS A  + L+  
Sbjct: 181 DCELYQADLKGSLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|187776558|ref|ZP_02993031.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
           15579]
 gi|187775217|gb|EDU39019.1| hypothetical protein CLOSPO_00070 [Clostridium sporogenes ATCC
           15579]
          Length = 257

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 14/256 (5%)

Query: 39  KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93
           K+R   Q E     + G + V  AL +    I +++  K  L    ++           +
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             V  + +D I    A HQG+   T P     ++ +            +++LD + DPHN
Sbjct: 61  NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEEPFIVILDEIEDPHN 119

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+ILR+A      G+I  KR +   +  + K+++GA+E++   +++N+ + + K+   G
Sbjct: 120 FGSILRTAEVCGVHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G              +  IAL++G+EG+G+   T+     +  + M G I +LN S
Sbjct: 180 IWIYGADMCGNDYCFDVSLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNAS 239

Query: 267 NAAAVALYITQNHFAK 282
            A  + +Y       K
Sbjct: 240 VAGGMLMYEILKQRMK 255


>gi|56418622|ref|YP_145940.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378464|dbj|BAD74372.1| tRNA/rRNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 245

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 17/242 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDK 103
            ++ G + V  AL    R I ++   + A        L+W         V+ VP + +D+
Sbjct: 2   DYIIGKNPVIEALK-AGRDINKIWIAEGAQRHTVEPVLEWAKR--RGVLVQYVPKRKLDQ 58

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   E  HQG+  + A      +D +         +   ++LD + DPHN+GAI+R+A A
Sbjct: 59  MA--EGAHQGVIAQAAAYRYYEIDDLFARAAERGEAPFFLILDELEDPHNLGAIMRTADA 116

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR S   +  +AK+++GA+EH+P  R++NL   + ++   G    G  + +
Sbjct: 117 VGAHGLIIPKRRSVGLTQTVAKASTGAIEHVPVARVTNLARTIDELKERGVWVAGTDASA 176

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +           +AL++G+EGKG+     E    +  L M G + +LN S AA++ +Y  
Sbjct: 177 QDDYRSLDGTMPLALVIGSEGKGISRLVLEKCDFLFRLPMRGHVTSLNASVAASLLMYEV 236

Query: 277 QN 278
             
Sbjct: 237 YR 238


>gi|56476097|ref|YP_157686.1| tRNA/rRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
 gi|56312140|emb|CAI06785.1| tRNA/RRNA methyltransferase protein [Aromatoleum aromaticum EbN1]
          Length = 244

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 9/243 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDK 103
           E+  +YG H V   L      +F+L  +    +A A+            +     + +D 
Sbjct: 2   ESRLIYGFHAVLGKLRRDPESVFELYLSAQRTDARAKDVVRLAESQNVRLIQAEAERLDG 61

Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +VG    HQG+            L+  L+ +  + L++VLD V DPHN+GA LR A A  
Sbjct: 62  MVGTRR-HQGVVARVDAKSRELKLADVLEVLEENALILVLDGVQDPHNLGACLRVADAVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              ++  K  +   +A   K ASGA + +PY+ ++NL  AL++M   G   +G + +++K
Sbjct: 121 AHAVVAPKDRAVGLNATAIKVASGAADSVPYVTVTNLARALREMQEAGIWVVGAAGEAEK 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +  +   +A +LGAEG GLR  T+ET   +A + M G +++LNVS A+ + L+  + 
Sbjct: 181 SVYEVDQKGPVAWVLGAEGDGLRRLTRETCDELARIPMLGTVESLNVSVASGICLFEARR 240

Query: 279 HFA 281
              
Sbjct: 241 QRG 243


>gi|152981297|ref|YP_001353804.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281374|gb|ABR89784.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
           Marseille]
          Length = 247

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106
            ++G H V+A L + +  + ++         R+           V+ +P     +  IVG
Sbjct: 5   MIFGFHAVTARLRHEASSVEEIYIDAGRHDQRMKDLIRAAEGAKVRIIPADDARLSSIVG 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  +   L     L   LDA+    LL+VLD + DPHN+GA LR A       
Sbjct: 65  TRR-HQGVVAKAGELSLARNLDELLDAIEGPPLLLVLDGITDPHNLGACLRVADGAGAHA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A  AK ASGA + +PYI ++NL   L+++       IG + DS+K L 
Sbjct: 124 VIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDIMLIGTTDDSEKGLY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +   AL++G+EG+G+R  T+ET   +  + M G +++LNVS A+ V LY  +   
Sbjct: 184 EADFSGPAALVMGSEGEGMRRLTRETCDVLVGIPMFGSVESLNVSVASGVCLYEARRQR 242


>gi|73541759|ref|YP_296279.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
 gi|72119172|gb|AAZ61435.1| RNA methyltransferase TrmH, group 3 [Ralstonia eutropha JMP134]
          Length = 256

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 9/247 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKT--VPP 98
           + +  +   L G H V+A L   ++ +  +    +   R   D   L     V+   V  
Sbjct: 8   NRAMAKQKLLIGFHAVTARLRQDAKGVTDVYVEASRRDRRMQDFIRLAESLGVRLHPVDA 67

Query: 99  QTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           + +  + G +  HQG+      +     L   LD +  + LL+VLD V DPHN+GA LR 
Sbjct: 68  ERLRGMAGTDR-HQGVVARAEDVALALNLDELLDGIEGTPLLLVLDGVTDPHNLGACLRV 126

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I  K  S   +  +AK ASGA E +PYI ++NL   L+++   G   +G +
Sbjct: 127 ADGAGAHAVIAPKDRSVGLNTTVAKVASGAAETVPYITVTNLARTLRELQERGIWVVGTA 186

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             + K L        +A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V L
Sbjct: 187 DGTDKTLYDVDLKGPMAIVMGAEGEGMRRLTRETCDELVGIPMLGGVESLNVSVASGVCL 246

Query: 274 YITQNHF 280
           Y      
Sbjct: 247 YEAVRQR 253


>gi|94311029|ref|YP_584239.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
           CH34]
 gi|93354881|gb|ABF08970.1| RNA methyltransferase TrmH, group 3 [Cupriavidus metallidurans
           CH34]
          Length = 247

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPV--KTVPPQTIDKIVG 106
            L G H V+A L   ++ +  +    N   R   D   L     V    V  + +  + G
Sbjct: 6   LLIGFHAVNARLRQNAQSVSDIYIEANRRDRRMQDFIRLAESLGVTLHPVDAERLRGMAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+      +     L   LD +  + LL++LD V DPHN+GA LR A       
Sbjct: 66  TDR-HQGVVARADDVSLALNLDELLDGIEGTPLLLLLDGVTDPHNLGACLRVADGAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A +AK ASGA E +PYI ++NL   L+++   G   IG +  ++K L 
Sbjct: 125 VIAPKDRSVGLNATVAKVASGAAETVPYITVTNLARTLRELQERGIWVIGTADGTEKALY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   A+++GAEG+G+R  T+ET   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DVDLKGPTAIVMGAEGEGMRRLTRETCDELVAIPMAGGVESLNVSVASGVCLYEAVRQR 243


>gi|148358250|ref|YP_001249457.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296105603|ref|YP_003617303.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|148280023|gb|ABQ54111.1| tRNA/rRNA methyltransferase [Legionella pneumophila str. Corby]
 gi|295647504|gb|ADG23351.1| tRNA/rRNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
          Length = 249

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 11/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R I +L   ++ + +   +  +       P++ +  Q +++   
Sbjct: 5   YVYGLHAVSALLANPHRMIKKLFVNQDRIDKRLHEFLVKAENAHVPIEKLSAQKMNQQFS 64

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            E  HQG+    + L           L+  +   L+++LD + DPHN+GA LRSA A   
Sbjct: 65  -EFTHQGVVALASALPEYGESDLVTLLERSKKPVLILILDGITDPHNLGACLRSADATGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  K  S + + V++K A GA E IP +R++NL  A+  +   G    G + +++  
Sbjct: 124 DFVVIPKDKSANITPVVSKVACGAAESIPLVRVTNLARAMDILKQQGVWIFGAAGEAEHL 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  IAL++GAEG GLR  T+E    +  L M G +++LNVS A  V+LY     
Sbjct: 184 LYAMDCSGNIALVMGAEGTGLRRLTREHCDGLFSLPMMGSVESLNVSVATGVSLYEVIRQ 243

Query: 280 FAK 282
             +
Sbjct: 244 RGQ 246


>gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 247

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 11/236 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIV 105
              +YG + V  A+ +    I ++  +K A   +     +       V T    T+ ++ 
Sbjct: 4   GDIIYGRNPVIEAIRSGKE-IEKIYVSKTAGGNISKIIGMAKEAGIVVSTADSDTLKRLA 62

Query: 106 GKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +   HQG+    A      +       +  +    L++LD + DPHN+GAI+RSA AF 
Sbjct: 63  -QTPNHQGVVAVGALYKYFDVTDILNYAEEKKEKPFLLILDEITDPHNMGAIIRSAEAFG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  KR S   +A + K+++GA+E+I   ++SN+   ++ +   G   IG  + ++K
Sbjct: 122 VHGVIIPKRRSAGINATVVKASAGAVEYIKVAKVSNINSTIRDLKEKGLWIIGTDAKAEK 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             E+   +  +AL++G+EGKG+     E    +  + M G I +LN S AA++ +Y
Sbjct: 182 SFEELDYDFPLALVIGSEGKGISRLVLENCDFVIKIPMKGKINSLNASVAASILMY 237


>gi|34496604|ref|NP_900819.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|52783300|sp|Q7NYX3|RLMB_CHRVO RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|34102459|gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 248

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G H ++A L    + + ++       +A A+   D        +  V  + +D + G
Sbjct: 6   LIHGFHAINARLWQNPKSLIEIWLAGGRHDARAKAVLDKAGAENVKLHIVDKERLDSMSG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+            L   L+ +    LL++LD V DPHN+GA LR A A     
Sbjct: 66  -NARHQGVVAMIDASMNYVDLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S + +A ++K A GA E +PYI ++NL   L+ +   G    G + ++   L 
Sbjct: 125 VIAPKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A ++GAEG+G+R  T+E    +  + M G +++LNVS ++ + L  ++   
Sbjct: 185 HFDASGPLAWVMGAEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVLSESRRQR 243


>gi|332365573|gb|EGJ43333.1| RNA methyltransferase [Streptococcus sanguinis SK1059]
          Length = 247

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 9/241 (3%)

Query: 47  ENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++ 
Sbjct: 8   KNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMT 67

Query: 106 GKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A + 
Sbjct: 68  D-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+    F   G       P
Sbjct: 127 AGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEASFWIFGTDMQG-TP 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    +
Sbjct: 186 SHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRN 245

Query: 280 F 280
            
Sbjct: 246 R 246


>gi|324989712|gb|EGC21655.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 242

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        +        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|225867831|ref|YP_002743779.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701107|emb|CAW97954.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 248

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 10/248 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K++  ++ ++  +YGVH V+   L N   K++     +        D        +    
Sbjct: 2   KAKEINETKD-IVYGVHAVTESLLANTGNKLYIQEDLRGKHVDHIKDLATSKKVSISWTK 60

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            + + ++    AVHQG  L  +      LD +       ++ LL++LD + DPHN G+IL
Sbjct: 61  KKALTEMTA-GAVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G
Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                  P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 180 TDVTG-TPSYKWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238

Query: 272 ALYITQNH 279
            +Y    +
Sbjct: 239 LMYEVFRN 246


>gi|296131814|ref|YP_003639061.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
 gi|296030392|gb|ADG81160.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
          Length = 244

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +  +YG + V  AL    R I ++L       A    +       PV+    +++DK+V 
Sbjct: 2   DDIIYGRNPVIEALK-AERPINKILLQHGTTRAGDILNLARQRKIPVQEADKRSLDKLV- 59

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+    A      +D +            +++LD + DPHN+GAI+R+A A   
Sbjct: 60  -QGNHQGVIALVAMKAYADIDDILKTAQEKGEDPFILLLDELEDPHNLGAIIRTADAVGI 118

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  +R +   +  + K+++GA+E++   R++NL   ++ +   G   +G  + + + 
Sbjct: 119 HGVVIPRRRAVGITPAVVKASAGAVEYVSVCRVTNLAQTIEYLKEKGCWVVGADAAAPQN 178

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      +AL++G+EGKG+    +E    +  L M G I +LN S AAAV  Y     
Sbjct: 179 LWQADLQGPLALVIGSEGKGISRLVREKCDFLVRLPMQGKIGSLNASVAAAVLCYEVLRQ 238

Query: 280 F 280
            
Sbjct: 239 R 239


>gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 246

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N  +     ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P   L    LD +       LL+VLD V DPHN+ A LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLXACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIPMAGSVSSLNVSVACGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|323350497|ref|ZP_08086159.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322123179|gb|EFX94864.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 242

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        +        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKNLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAIEHIPISRVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISTNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|319779502|ref|YP_004130415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
           equigenitalis MCE9]
 gi|317109526|gb|ADU92272.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Taylorella
           equigenitalis MCE9]
          Length = 245

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L G H V+A +      I ++    N   +R+           +KT  V  Q +D +  
Sbjct: 6   ILAGFHAVNARIKLAPDSIKEIYFESNRKDSRMRTLLERATELKIKTYAVDSQRLDALA- 64

Query: 107 KEAVHQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K   HQG+       + A  +   LD +    LL++LD V DPHN+GA LR+A A     
Sbjct: 65  KGIKHQGVLAIASMQQLAVSIDDVLDVINEPALLLILDGVTDPHNLGACLRTADAAGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   ++ + + A GA + +PYI ++NL   L+ +   G   IG +  ++K + 
Sbjct: 125 VIAPKDRSVGLNSTVQRVACGAADTVPYIMVTNLARTLRSLKERGIWIIGTTDATEKSVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   A ++GAEG G+R  T E+   +  + M G +++LNVS A+AV LY +    +
Sbjct: 185 DIDAKLPTAWVMGAEGDGMRRLTSESCDQLVRIPMLGSVESLNVSVASAVCLYESLRQRS 244


>gi|170741100|ref|YP_001769755.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168195374|gb|ACA17321.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 268

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 110/232 (47%), Positives = 150/232 (64%), Gaps = 1/232 (0%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            + + LYG H V+ AL NP R++ +LLAT+N LARL  +       P +TV P  I  +V
Sbjct: 35  EDTVVLYGWHPVAEALRNPRRRLTRLLATENGLARLTEEVGELRIAP-ETVRPGEISALV 93

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G +AVHQGL LE  PL  P ++ +    +L+ LD + DPHN+GAI+R+A AF+   I+TT
Sbjct: 94  GPDAVHQGLYLEAEPLPVPPIEDLPADAVLLALDQITDPHNVGAIVRTAAAFAVTAIVTT 153

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R+SP+ + VLAKSASG LEH+P+I + NL +AL +    GF  IGL S++  PL +   
Sbjct: 154 ARHSPAATGVLAKSASGGLEHVPFITVRNLAEALIRFGEQGFTRIGLDSEAPVPLSEVTP 213

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + ++LGAEGKGLR +T+E    MA L  PG IK+LNVSNAAA+ LY   
Sbjct: 214 TRPLVIVLGAEGKGLRQRTRECCDVMARLDFPGAIKSLNVSNAAAITLYALA 265


>gi|163749298|ref|ZP_02156547.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
           KT99]
 gi|161331017|gb|EDQ01943.1| RNA methyltransferase, TrmH family, group 3 [Shewanella benthica
           KT99]
          Length = 251

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 15/249 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
            +    +G+H V A L     ++ +L   +    +      ++   +   V+    + +D
Sbjct: 2   KKQDITFGIHAVEAVLKYSPERVIELWVLQGRDDKRFMPILESAAEYGISVQHATRKVLD 61

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVR----NSQLLMVLDHVNDPHNIGAIL 151
                   HQG+      +       L+  LD +      +  L++LD V DPHN+GA L
Sbjct: 62  DK-SDGGQHQGVIARVKAVKQLNDKDLAVLLDKIEVEKTETPFLLILDGVTDPHNLGACL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G
Sbjct: 121 RNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGIWIVG 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + ++++ L +      +A+ +G+E KGLR  T+E+  S+  + M G + +LNVS A  V
Sbjct: 181 AAGEAEQDLYKADLKGSLAIAMGSEDKGLRRLTRESCDSLVSIPMTGSVSSLNVSVATGV 240

Query: 272 ALYITQNHF 280
            L+      
Sbjct: 241 CLFEAVRQR 249


>gi|125718827|ref|YP_001035960.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK36]
 gi|125498744|gb|ABN45410.1| tRNA (Guanosine-2'-O-)-methyltransferase, TrmH family, putative
           [Streptococcus sanguinis SK36]
 gi|327488747|gb|EGF20546.1| RNA methyltransferase [Streptococcus sanguinis SK1058]
          Length = 242

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++              D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLCGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|154247282|ref|YP_001418240.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154161367|gb|ABS68583.1| RNA methyltransferase, TrmH family, group 3 [Xanthobacter
           autotrophicus Py2]
          Length = 288

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 108/229 (47%), Positives = 150/229 (65%), Gaps = 1/229 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG HTV+ A+ NP R+  +L AT+NA+ RL  +  L  P   + V P  IDK++G +A
Sbjct: 56  LLYGWHTVAEAIGNPKRRFRRLRATENAIHRLAEE-GLTPPIAPEIVRPGDIDKLLGADA 114

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           VHQGL  E   L SP L  +  + L++VLD + DPHN+GAI+RSA AF+   I+TT R+S
Sbjct: 115 VHQGLLAEVDHLPSPRLKDIAKTDLVLVLDQITDPHNVGAIVRSAAAFAVSAIVTTARHS 174

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P+ + VLAKSASG LEH+P+  ++NL  AL ++   G   +GL S+    LE       +
Sbjct: 175 PAATGVLAKSASGGLEHVPFCLVTNLARALTELKENGMLVVGLDSEGPADLEDTPMRAPL 234

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AL+LGAEGKGLR  T+ET   +A + +PG IK+LNVSNAAA++L + + 
Sbjct: 235 ALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALSLGMARR 283


>gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862]
          Length = 298

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/270 (27%), Positives = 128/270 (47%), Gaps = 15/270 (5%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           D  +    R  R  ++M+   +    T+Q E  F++G H    AL     +I ++     
Sbjct: 27  DRRFNDRDRQPRQKREMRVEAEAVDDTAQTE--FVFGHHASVEALK-GETEINKVWLQSG 83

Query: 77  ALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129
              ++  +           ++  P   +D++      HQG+ L  A     T+D +    
Sbjct: 84  LADKIRNEVMALAKKRGLIIQDAPKAKLDELT-NGQNHQGVVLSIAAYAYATIDDLFAKA 142

Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                +   +VLD + DPHN+G+ILR+A A    GII  KR +   ++V+AK+++GA+EH
Sbjct: 143 AEKSEAPFFLVLDSIEDPHNLGSILRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEH 202

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  R++NL   ++++   G    G   D K    +       ALI+G EGKG+ P  ++
Sbjct: 203 VPVARVTNLVQTVEQLKERGLWVFGTDMDGK-DYRRWDAAGPTALIIGNEGKGISPLLKK 261

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           T      + M G +++LN S AA++ +Y  
Sbjct: 262 TVDETLTIPMVGHVQSLNASVAASLLIYQA 291


>gi|332142968|ref|YP_004428706.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|332142987|ref|YP_004428725.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327552990|gb|AEA99708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327553009|gb|AEA99727.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 246

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 113/245 (46%), Gaps = 10/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTID 102
            +  +LYG+H + + L     ++ ++   K     RL    N        V+    + +D
Sbjct: 2   AQQEWLYGLHAMQSVLEKEPERVMEVWVLKGRNDDRLTNIVNQARRFGISVQFSQRKALD 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVA 156
             V  E  HQG+     P   L    LD +  S    L++VLD V DPHN+GA LR+A  
Sbjct: 62  DKVSGEQ-HQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGACLRTADG 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  K  S S +  + K A GA E +P I+I+NL   L+ +   G   +G + ++
Sbjct: 121 AGVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIVGTAGET 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K L         AL++GAEGKG+R  T+ET   +  L M G + +L VS A  V LY  
Sbjct: 181 DKTLYDVDLKGSTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLYVSVATGVCLYEI 240

Query: 277 QNHFA 281
                
Sbjct: 241 VRQRG 245


>gi|212637935|ref|YP_002314455.1| rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559415|gb|ACJ32470.1| rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 246

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 11/239 (4%)

Query: 49  LFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
             + G + V  AL +     KI+    ++    +            V+ VP + +D++  
Sbjct: 3   DLIIGKNPVLEALKSGREMNKIWIAEGSQRGQMQSIIQLAKEMGITVQYVPKKKMDQLS- 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+  + A      +D +         +   ++LD + DPHN+G+I+R+A A   
Sbjct: 62  -DGNHQGVIAQVAAYRYYDIDDLFKKAEEQGEAPFFIILDELEDPHNLGSIMRTADAVGA 120

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII  KR S S +A +AK+++GA+E++P  R++NL   + ++   G    G  +   + 
Sbjct: 121 HGIIIPKRRSVSLTATVAKASTGAIEYVPVARVTNLARTVDELKERGVWIFGTDAKGTQD 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             Q      +AL++G+EGKG+    ++    +  L M G + +LN S AA++ +Y    
Sbjct: 181 YRQLDGVIPLALVIGSEGKGISRLLRDKCDVLVRLPMIGHVTSLNASVAASLLMYEVYR 239


>gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
           curdlanolyticus YK9]
 gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
           curdlanolyticus YK9]
          Length = 281

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 127/277 (45%), Gaps = 14/277 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           +++ Y + R+  R     ++  Q    + T+  +   + G H V  AL +  R+I ++  
Sbjct: 4   RNNPYRQERQRERSSGGYRTTEQVQAEQATADNDGEIIAGKHPVLEALRSG-REINKVWI 62

Query: 74  TKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129
            + +   L          H   V+    + +D + G E  HQG+  + A      ++ + 
Sbjct: 63  AEGSQKHLTAPIVAEAKQHGIIVQFADKRKLDSMAG-EVAHQGVIAQAAAYRYYEVEEIL 121

Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                   +  L++LD + DPHN+G+ILR+A      G+I  KR S   +A ++K ++GA
Sbjct: 122 AAAKAKGETPFLLLLDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVSKISAGA 181

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            E++P  R++NL   ++ +   G    G    +++ + +   +  + L++G E KG+   
Sbjct: 182 AEYVPVARVTNLAQTIETLKEQGVWIAGADVAAEQDVYRTKFDMPLGLVIGNESKGMGRL 241

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +E    +  L M G + +LN S AA V +Y      
Sbjct: 242 IREKCDFLIKLPMAGQLNSLNASVAAGVLMYEVLRQR 278


>gi|228477774|ref|ZP_04062402.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           salivarius SK126]
 gi|228250466|gb|EEK09680.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           salivarius SK126]
          Length = 247

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 120/247 (48%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L  N   K++     +                 +   P +
Sbjct: 2   KTTKELSLDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +      L  +        + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSELSVIMDKAEQEENPLVLILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D   P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDG-TPSHKWNTAGKVALIIGNEGKGISANIKKQVDEMITIPMSGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|330939882|gb|EGH43109.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 240

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 12/233 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLGVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 237


>gi|325697470|gb|EGD39356.1| RNA methyltransferase [Streptococcus sanguinis SK160]
          Length = 242

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V+ AL  N   K++     +        D        +   P +T+ ++
Sbjct: 2   EKNDIVYGVHAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       
Sbjct: 121 VAGVIIPKHRAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G E KG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEAKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|319408375|emb|CBI82028.1| tRNA/rRNA metyltransferase [Bartonella schoenbuchensis R1]
          Length = 276

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 132/262 (50%), Positives = 175/262 (66%), Gaps = 7/262 (2%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-RHTSQP---ENLFLYGVHTVSAALNNPS 65
           EKI   K+S++   RR +RD K     +    +H S P     ++LYG+H+V  AL NP 
Sbjct: 3   EKIS--KNSYFPHPRRQYRDIKSATRVSSTHLKHRSAPLIQGTVYLYGIHSVKEALKNPK 60

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           R    L AT NAL RL+   +   P P+K  PP+ +D +VGK+AVHQG+ LET  L    
Sbjct: 61  RVFNHLYATPNALKRLNITES-DVPCPLKLYPPKKLDTLVGKDAVHQGVVLETEVLKPRH 119

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L  + N+ L++V+D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE
Sbjct: 120 LSELTNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTYRHSPQESGVLAKAASGALE 179

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            I YI + NL +AL+++H  GF ++GL S+ + PLE  +   KIALILGAEGKGLR KT+
Sbjct: 180 LIDYITVRNLAEALKEIHQAGFNSLGLDSEGELPLETALTGKKIALILGAEGKGLRKKTR 239

Query: 246 ETATSMAHLHMPGIIKALNVSN 267
           ET  S+A L++PG IK+LNVSN
Sbjct: 240 ETVHSLARLNIPGDIKSLNVSN 261


>gi|227485587|ref|ZP_03915903.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236453|gb|EEI86468.1| tRNA/rRNA methyltransferase [Anaerococcus lactolyticus ATCC 51172]
          Length = 239

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 8/235 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108
           +YG   V  A+++   KI++    K     ++      +     +  V  +  DKI   E
Sbjct: 9   IYGRKPVIDAIDSGV-KIYKAFVIKQNSKIVEEIIAKLNKANVEINFVDKRFFDKI---E 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+ +E        L  +   Q L++LD + DPHN+GAI+RSA +F  DG+I  +R 
Sbjct: 65  LNHQGVMVEAESFEYKDLRDLDKYQRLIILDQIEDPHNLGAIIRSAESFGFDGVIIPERR 124

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S S ++ K+++GA+ +I  I + N   A++++   GF   GL+ ++  P++Q     K
Sbjct: 125 SASVSPIVYKTSAGAINNINIIMVKNTNRAIEEIKEAGFWVYGLAGEASSPIDQVDLKGK 184

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
           + LI+G EGKGL    +E    + ++ M G + +LN S A+A+A+Y    QN F+
Sbjct: 185 VCLIVGNEGKGLSRLVRENCDILINIPMKGFVNSLNASVASAIAMYEVLRQNGFS 239


>gi|315221313|ref|ZP_07863236.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           anginosus F0211]
 gi|315189672|gb|EFU23364.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           anginosus F0211]
          Length = 242

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL  N   K++     +        D        +     +T+ ++
Sbjct: 2   ENNDIVYGVHAVTEALMTNTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTSKKTLQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  +       +A+        + LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVSEFAYTDFEAMLKMAEREENPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+ AL K+   GF   G   +   
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQALDKLKHAGFWIFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSTKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
 gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
          Length = 295

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 27/289 (9%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRH------------TSQPENLFLYGVHTVSAALNN 63
           +        + HR  +K+      S                + +   +YG HTV AAL N
Sbjct: 6   QRPQPNSQGQRHRPKRKINPVRSHSPQIPSPQSGFDSPNQEETDTDLIYGRHTVLAALEN 65

Query: 64  PSRKIFQLLA-----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             R + ++       + N   +        +   +  V  Q +D+I      HQG+  + 
Sbjct: 66  -ERSLNRIWMVPQLQSDNRFQK-GLSTAKANGTLIDRVSNQRLDQIA-PGTNHQGIVAQV 122

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           +P     L  +        +  ++++ + + DPHN+GAI+R++ A    G+I  +R +  
Sbjct: 123 SPYAYKELSELIDLAKAASSEPVIVMAEGLTDPHNLGAIIRTSEAIGVSGLILPQRRAVG 182

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            ++ + K A+GALE  P  R+ NL  AL+++   GF   G S+ + +PL     +  + L
Sbjct: 183 ITSTVMKVAAGALETFPVARVVNLNRALEELKQAGFWIYGTSATADQPLYTVKFSGPVVL 242

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G+EG+GL    +++   +  + + G   +LNVS A  +ALY      
Sbjct: 243 VVGSEGQGLTRLIEQSCDILVSIPLVGQTPSLNVSVATGMALYEIYRQR 291


>gi|289422574|ref|ZP_06424417.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
 gi|289157146|gb|EFD05768.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
          Length = 244

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 13/242 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            + G + V  AL N  R I +++    +K    +        +   ++ V    +D++  
Sbjct: 3   LIEGRNPVIEALKNN-RPIEKIMVNKGSKEGSIKKIIGMAKDNNIIIQQVDRHKLDEMSE 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+   T+  +   L  +             ++LD + DPHN+G+I+R+A A   
Sbjct: 62  SHA-HQGVIALTSDYVYYELSDILKKAREKEEDPFFIILDGITDPHNLGSIIRTADAVGA 120

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII  KR S   + ++AK+++GA+E++P  +++N+ + ++++   G     +       
Sbjct: 121 HGIIIPKRRSVHITPIVAKASAGAVEYVPVCKVTNIVNTIKQLKEEGLWIAAVDMGGDA- 179

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             Q      +AL++G+EG+G+   T+E       + M G + +LN S A  + LY     
Sbjct: 180 FYQTNLTGPLALVVGSEGEGISRLTKENCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQ 239

Query: 280 FA 281
             
Sbjct: 240 RN 241


>gi|83951350|ref|ZP_00960082.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
           nubinhibens ISM]
 gi|83836356|gb|EAP75653.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius
           nubinhibens ISM]
          Length = 259

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/251 (38%), Positives = 148/251 (58%), Gaps = 9/251 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  S  E ++L+G+H V  AL NP+R   +L+ TKNA  +L  DA        +  
Sbjct: 10  KEQAKKASAAETVWLFGLHAVRDALMNPARDKLRLIVTKNACDKLQ-DAIDAAGITPEMA 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE  PL   +L+ V       +  L++LD V DPHN+GAIL
Sbjct: 69  DPRKFSAPIDPQSVHQGAALEVKPLNWGSLEDVALREGVGAPRLLLLDRVTDPHNVGAIL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I  +  S  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + GF  +G
Sbjct: 129 RSAEVFGAQAVIAPRHGSAPETGALAKTASGALERQPYLRVRNLADAISELQAMGFLVLG 188

Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L+ +++  ++  +   ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNA
Sbjct: 189 LAGEAEDTIDAALDGMRDRPVALVLGAEGPGLRQKTRETCDKLVKIPFAGGFGSLNVSNA 248

Query: 269 AAVALYITQNH 279
           AAV+LY ++  
Sbjct: 249 AAVSLYASRER 259


>gi|304312001|ref|YP_003811599.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
           proteobacterium HdN1]
 gi|301797734|emb|CBL45956.1| 23s rrna (guanosine-2\'-o-)-methyltransferase [gamma
           proteobacterium HdN1]
          Length = 248

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 11/246 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDK 103
           +  +LYG+H+VSA L     ++ +L   +     R+     L   H    + +P +T+D 
Sbjct: 3   KQDWLYGIHSVSAILERHPDRVLELFIVETREDKRIGDIIKLAKTHGLRAQFIPKKTMDH 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVA 156
            + + AVHQG+A+   P      + +++          L+ LD + DPHN+GA LRSA A
Sbjct: 63  QLEEGAVHQGVAIRYRPSAPGDENDLKHLVENANAPLFLLFLDGITDPHNLGACLRSADA 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SD 215
                +ITT+  S   SA + K A GA E +P+I+++NL   L+ +   G    G + S+
Sbjct: 123 AGVHAVITTRDKSAGLSAAVRKVAVGAAETVPFIQVTNLARTLEMVRQQGVWVYGTALSE 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             K + +      I +++GAEG GLR  TQ+    + ++ M G +++LNVS A  V L+ 
Sbjct: 183 GAKTIYETDLRGNIGIVMGAEGVGLRRLTQDCCDGLVYIPMAGTVQSLNVSVATGVCLFE 242

Query: 276 TQNHFA 281
                +
Sbjct: 243 ALRQRS 248


>gi|323705643|ref|ZP_08117217.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535120|gb|EGB24897.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 248

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102
           +     +YG + V  A+N+  R+I ++  +K+A   +             V T    T+D
Sbjct: 2   KENENIIYGRNPVLEAINSG-REIEKIYVSKSAKGNISKIIKSARDKNIIVSTADNVTLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+ G    HQG+    +      ++ +            +++LD + D HN GAI+R+A 
Sbjct: 61  KMSG-NGNHQGVVALCSLYKYCDVEDILEYANEKGEKPFILLLDGITDTHNFGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AFS  GI+  KR S   ++ + K+++GA E++   ++SN+ +A+  +   G   +G S D
Sbjct: 120 AFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKVSNINNAINNLKKQGVWIVGSSVD 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K+       +  IA+++G+EG+G+    ++    +  + M G + +LN S AA++ +Y 
Sbjct: 180 AKEDFSNVDYDQPIAIVIGSEGEGISELVKKNCDYLVKIPMMGNMNSLNASVAASIFMYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VVRQR 244


>gi|258513621|ref|YP_003189843.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 246

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104
           +  + G + V  AL +  R I ++L  K  L+    +       +  PV+ V    ++KI
Sbjct: 5   SDVIVGRNPVKEALKS-QRPINKVLVAKGKLSGSLAEICSLARQNGIPVQEVDRTALEKI 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              EAVHQG+A   A      L+ +          +++LD + DPHN+GAI+R+A A   
Sbjct: 64  SA-EAVHQGVAAYAAAKEYVELEDILARAGEQEPFIIMLDEITDPHNLGAIIRTADAAGV 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++ T+R S   + V+AKS++GA+E++P  R++NL  +++ +   G    G   +  K 
Sbjct: 123 HGVVVTRRRSALLTPVVAKSSAGAVEYVPVARVTNLVQSIKILQENGIWVAGADMEGDKV 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +   +  IA+++G EGKGL    +E    +  L M G I +LN S A A+  Y     
Sbjct: 183 YWEAPLSGPIAIVIGGEGKGLGRLVKEKCDFLVRLPMQGKISSLNASVATALLAYEVVRQ 242

Query: 280 FA 281
            +
Sbjct: 243 RS 244


>gi|148381440|ref|YP_001255981.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. ATCC 3502]
 gi|153932755|ref|YP_001385815.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
 gi|153937009|ref|YP_001389222.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
 gi|168178813|ref|ZP_02613477.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           NCTC 2916]
 gi|170759212|ref|YP_001788840.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
 gi|226950952|ref|YP_002806043.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A2 str. Kyoto]
 gi|148290924|emb|CAL85060.1| putative tRNA/rRNA methyltransferase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928799|gb|ABS34299.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. ATCC 19397]
 gi|152932923|gb|ABS38422.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A str. Hall]
 gi|169406201|gb|ACA54612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A3 str. Loch Maree]
 gi|182670049|gb|EDT82025.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           NCTC 2916]
 gi|226841703|gb|ACO84369.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           A2 str. Kyoto]
          Length = 257

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 14/256 (5%)

Query: 39  KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93
           K+R   Q E     + G + V  AL +    I +++  K  L    ++           +
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             V  + +D I    A HQG+   T P     ++ +            +++LD + DPHN
Sbjct: 61  NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+ILR+A      G+I  KR +   +  + K+++GA+E++   +++N+ + + K+   G
Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G              +  IAL++G+EG+G+   T+     +  + M G I +LN S
Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNAS 239

Query: 267 NAAAVALYITQNHFAK 282
            A  + +Y       K
Sbjct: 240 VAGGMLMYEILKQRMK 255


>gi|319939872|ref|ZP_08014227.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
 gi|319810883|gb|EFW07202.1| TRNA/rRNA methyltransferase [Streptococcus anginosus 1_2_62CV]
          Length = 242

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V+ AL  N   K++     +        D        +     + + ++
Sbjct: 2   ENNDIVYGVHAVTEALMANTGNKLYIQDDLRGKNVAKMKDLAAEKKVSISWTTKKILQEM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG  L  +       +A+       ++ LL++LD + DPHN+G+ILR+A A +
Sbjct: 62  TD-GAVHQGFVLRVSEFAYTDFEAMLKMATQEDNPLLLILDGLTDPHNLGSILRTADATN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G   +   
Sbjct: 121 VTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKHAGFWIFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    
Sbjct: 180 PSTKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFR 239

Query: 279 HF 280
           + 
Sbjct: 240 NR 241


>gi|153938342|ref|YP_001392853.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
 gi|152934238|gb|ABS39736.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           F str. Langeland]
 gi|295320831|gb|ADG01209.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           F str. 230613]
          Length = 257

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 111/256 (43%), Gaps = 14/256 (5%)

Query: 39  KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93
           K+R   Q E     + G + V  AL +    I +++  K  L    ++           +
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             V  + +D I    A HQG+   T P     ++ +            +++LD + DPHN
Sbjct: 61  NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+ILR+A      G+I  KR +   +  + K+++GA+E++   +++N+ + + K+   G
Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNINNVIDKLKEKG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G              +  IAL++G+EG+G+   T+     +  + M G I +LN S
Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKSKCDVLVKIPMLGNITSLNAS 239

Query: 267 NAAAVALYITQNHFAK 282
            A  + +Y       K
Sbjct: 240 VAGGMLMYEILKQRMK 255


>gi|325265987|ref|ZP_08132673.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
           denitrificans ATCC 33394]
 gi|324982625|gb|EGC18251.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Kingella
           denitrificans ATCC 33394]
          Length = 248

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H ++A L    + I +L   +N   A  R   +        V       +  +  
Sbjct: 6   LIYGFHAINARLWQNPKSITELYVLENKNDARTREVLEKAAAERVRVHFANADRLHAM-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   L+ +R    L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVIGFIDASKNHVHLEDVLENLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G        L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGDADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + +A ++G EG+G+R  T+E   ++  + M G ++++N+S +A + L  T+   
Sbjct: 185 HYDIPESVAWVMGNEGEGMRRLTREHCDALVSIPMFGTVESMNISVSAGMVLAETRRQR 243


>gi|70727476|ref|YP_254392.1| hypothetical protein SH2477 [Staphylococcus haemolyticus JCSC1435]
 gi|90110723|sp|Q4L3J1|TRMHL_STAHJ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|68448202|dbj|BAE05786.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 249

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++   +    +   D           V+TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIVSGH-TINKIWIQEGIRKQQINDILQNAKEQKLIVQTVPKSKLDN 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D    SQ        +++LD + DPHN+G+ILR+A A
Sbjct: 61  LA--NAPHQGVAALIAPYEYADFDQFIQSQKDKEGLSTVVILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I  KR S + +  +AK+++GA++H+P +R++NL   + ++   G+   G  +D+
Sbjct: 119 SGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEHGYWVAGAEADN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+    ++       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRDMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 YR 240


>gi|322807825|emb|CBZ05400.1| trmh family tRNA/rRNAmethyltransferase YacO [Clostridium botulinum
           H04402 065]
          Length = 257

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 14/256 (5%)

Query: 39  KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93
           K+R   Q E     + G + V  AL +    I +++  K  L    ++           +
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMVAKGDLEGSIKIIISLAKEKGIVI 60

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             V  + +D I    A HQG+   T P     ++ +            +++LD + DPHN
Sbjct: 61  NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+ILR+A      G+I  KR +   +  + K+++GA E++   +++N+ + + K+   G
Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G              +  IAL++G+EG+G+   T+     +  + M G I +LN S
Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNAS 239

Query: 267 NAAAVALYITQNHFAK 282
            A  + +Y       K
Sbjct: 240 VAGGMLMYEILKQRMK 255


>gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           334]
 gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
 gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
           5J108-111]
 gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           334]
 gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 270

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107
           +YG+H VSA L+   ++I +L   +N    RL           VK +      ++ +  +
Sbjct: 27  IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86

Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   +       L   L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 87  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264


>gi|225024199|ref|ZP_03713391.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
           23834]
 gi|224943224|gb|EEG24433.1| hypothetical protein EIKCOROL_01071 [Eikenella corrodens ATCC
           23834]
          Length = 248

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 111/240 (46%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H V+A L    + + +L A         +   +       PV  V    +D +  
Sbjct: 6   LIYGFHAVNARLWQNPKSLTELYALSGRHDTRMQQALEKAAQENIPVHFVEAARLDNLC- 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + A HQG+A           L   LD +    LL++LD + DPHN+GA LR A A     
Sbjct: 65  RHARHQGIAGFIDASHNHVHLDDVLDNLTEPPLLLILDGITDPHNLGACLRVADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++       +G     +  L 
Sbjct: 125 VIAPKNRSVGLNATVSKVACGAAETVPYIAVTNLARTLRELKERDIWIVGTDMGGEADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  +A ++G EG+G+R  T+E   ++  + M G +++LNVS +  + L  T+   A
Sbjct: 185 HYDIPAAVAWVMGNEGEGMRRLTREHCDALVSIPMLGTVESLNVSVSTGMVLAETRRQRA 244


>gi|75910610|ref|YP_324906.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC
           29413]
          Length = 327

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 20/256 (7%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPF 91
            +   + E+  +YG H V +AL N  R + ++  T     RL +D            +  
Sbjct: 65  PKVKEENESDIIYGRHPVLSALEN-QRGLNRIWVT----PRLRYDPRFHNLILQAKENGA 119

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPH 145
            +  V P+ +D+I   +A HQG+A + AP        +          +++V D + DPH
Sbjct: 120 VIDEVEPKRLDQITD-QANHQGIAAQIAPYSYIEFYELIAQAKSVTDPVIIVADGITDPH 178

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R+A A    G++  +R +   ++ + K A+GALE+ P  R+ NL+ AL+ +   
Sbjct: 179 NLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLSRALEDLKEA 238

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G ++   +PL        I L++G+EG+GL   TQ +   +  + + G   +LN 
Sbjct: 239 GFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNA 298

Query: 266 SNAAAVALYITQNHFA 281
           S AA +ALY      +
Sbjct: 299 SVAAGMALYEIFRQRS 314


>gi|54310420|ref|YP_131440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Photobacterium
           profundum SS9]
 gi|52783294|sp|Q6LM40|RLMB_PHOPR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|46914861|emb|CAG21638.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 245

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  ++G+H V A L     ++ ++   K+    RL             ++    + +D  
Sbjct: 3   NDMIFGIHAVKAVLATDPVRLIEVFVLKDRQDDRLMPLLTELKDLGITIQHAGRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQG+     P   L    LD +     + LL++LD V DPHN+GA LR+A A  
Sbjct: 63  A-KGASHQGIIARVKPAKQLNEHDLDTILEGSENPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  +   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 AVAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|269103599|ref|ZP_06156296.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163497|gb|EEZ41993.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 247

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 11/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPV--KTVPPQTIDKI 104
           N  ++G+H V A L +   +  ++   K     RL    N      V  +    + +D  
Sbjct: 3   NEMIFGIHAVKAVLASDPSRFIEVFVLKGRQDERLLPILNELQMLGVTMQQAGRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V   A HQG+     P        LDA+   + + LL++LD V DPHN+GA LR+A A  
Sbjct: 63  V-HGANHQGIVARVRPGKQFNENDLDAILAGKENPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSK 217
              II  K  S   +A  +K A GA E +P +R++NL   ++ +        +G + ++ 
Sbjct: 122 AVAIIVPKDRSAQLTATASKVACGAAEVVPLVRVTNLARTMRYLQEEKNIWIVGTAGEAT 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + Q      +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A+ + L+   
Sbjct: 182 HDIYQTKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|292670592|ref|ZP_06604018.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
           noxia ATCC 43541]
 gi|292647758|gb|EFF65730.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Selenomonas
           noxia ATCC 43541]
          Length = 272

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 115/258 (44%), Gaps = 9/258 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPH 89
           K    +Q+     +  +  L G H V  A+       +I        +  R   D    +
Sbjct: 6   KHTEQHQRGTRPVEHRSDILAGRHAVMEAMKAGRGINRILLADGLHGSGVRELRDLAREY 65

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142
                 V    +D  V +   HQG+    AP+   +++ +           LL++LD + 
Sbjct: 66  GVATDVVSRSKLDAAVPEGVRHQGVIAYAAPVSYVSVEEIIAAARARGEDPLLLLLDGIE 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GA+LR+A A    GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ +
Sbjct: 126 DPQNLGALLRTADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTMRAL 185

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF   G   D  +  ++      + L++G+EG+G+   T+E       L M G I +
Sbjct: 186 KEQGFWIAGADMDGTETYDRANLTGALVLVIGSEGRGMSRLTREICDFTVRLPMCGKINS 245

Query: 263 LNVSNAAAVALYITQNHF 280
           LN S A A+ +Y  Q   
Sbjct: 246 LNASAAGAILMYEAQRQR 263


>gi|258512689|ref|YP_003186123.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 255

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 126/255 (49%), Gaps = 10/255 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPF 91
           M+   ++     +     + G H V AAL +  R + ++   + A       A       
Sbjct: 5   MRDGARRRSAQGEEAADLVKGRHAVLAALES-ERPVNKVWVAEGASGMDAIVAKARSRGV 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHN 146
            V+ VP   +D++      HQG+  + AP     LD V       + L++VLD + DPHN
Sbjct: 64  VVQFVPRSRLDEMAS---AHQGVIAQVAPYAYVDLDDVIRRDTGFAPLVVVLDEIADPHN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAILR+A A    G++  KR     + V+AK+A+GALE +P  R++N+  ALQ++   G
Sbjct: 121 FGAILRTAEASGAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARVANVAQALQRLKQAG 180

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +  +G   ++K P  +       A+++G+EG+G+R   +E    +  + + G +++LN S
Sbjct: 181 YWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNAS 240

Query: 267 NAAAVALYITQNHFA 281
            AA V LY      A
Sbjct: 241 VAAGVLLYEAVRQRA 255


>gi|295396932|ref|ZP_06807055.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294974825|gb|EFG50529.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 271

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 16/265 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENL-----FLYGVHTVSAALN--NPSRKIFQLLATKNALAR 80
           RD ++ Q+ +++ R T+  E L     F+YG H     L   +   K+F         A+
Sbjct: 3   RDNQRQQNRDRRPRSTNNEEELDQSPDFVYGFHAAMEVLEGDHDVNKVFLQTGLNEKNAQ 62

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133
               A       V  VP + +D +      HQG+ +  A      L+ +           
Sbjct: 63  AILKAANKRNILVSNVPKEKLDTL-SDGGNHQGVVMAIAAYKYAELEDIFKKAEEANEDP 121

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++MVLD + DPHN+G+ILR+A A    G+I   R +   + V+AK+++GA+EH+P +R++
Sbjct: 122 IIMVLDGIEDPHNLGSILRTADASGVHGVIIQNRRAVGLTQVVAKTSTGAIEHVPVVRVT 181

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           N++  +  +   G    G      + + Q      IA+++G EGKG+ P  ++    M  
Sbjct: 182 NISKTIDLLKERGVWVFGTDMKG-QSMWQMDAALPIAVVIGNEGKGVSPGVKKHLDGMIT 240

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M G +++LN S AA + +Y    
Sbjct: 241 IPMRGHVQSLNASVAAGLLMYQIYQ 265


>gi|149907739|ref|ZP_01896486.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
 gi|149809409|gb|EDM69338.1| hypothetical protein PE36_07617 [Moritella sp. PE36]
          Length = 250

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           +  ++G+H V + L +   +  ++ A K     RL       +     V+ V   T+DK 
Sbjct: 3   SELIFGIHAVKSLLEHEPERFIEVYALKGREDDRLTPLIEELNDIGISVQLVNRNTLDKK 62

Query: 105 VGKEAVHQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
                 H G+                 L   L+      LL++LD V DPHN+GA LRSA
Sbjct: 63  CD-GGRHNGVLARVKEGKKLNESDLDTLLNRLEEKEQHPLLLILDGVTDPHNLGACLRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I  K  S   ++V+ K A GA E +P I ++NL   ++++       +G + 
Sbjct: 122 DAAGVHAVIVPKDKSVQLTSVVRKVACGAAETVPLIAVTNLARTMRELQDRRIWIVGTAG 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ + L Q      +A+ +GAE KGLR  T+E    +  + M G + +LNVS A  + L+
Sbjct: 182 EATQDLYQPKLTGPLAIAMGAEEKGLRRLTREHCDELISIPMAGSVSSLNVSVATGICLF 241

Query: 275 ITQNHF 280
                 
Sbjct: 242 EVVRQR 247


>gi|168181845|ref|ZP_02616509.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Bf]
 gi|237796961|ref|YP_002864513.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
           657]
 gi|182674742|gb|EDT86703.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Bf]
 gi|229262334|gb|ACQ53367.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           Ba4 str. 657]
          Length = 257

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 14/256 (5%)

Query: 39  KSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPV 93
           K+R   Q E     + G + V  AL +    I +++  K  L    ++           +
Sbjct: 2   KNRVGQQEEIREDIIEGRNAVIEALKSNK-TIEKVMIAKGDLEGSIKIIISLAKEKGIVI 60

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             V  + +D I    A HQG+   T P     ++ +            +++LD + DPHN
Sbjct: 61  NEVDRKKLDSISQTRA-HQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFIIILDEIEDPHN 119

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+ILR+A      G+I  KR +   +  + K+++GA E++   +++N+ + + K+   G
Sbjct: 120 FGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAAEYMKISKVTNINNVIDKLKEKG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G              +  IAL++G+EG+G+   T+     +  + M G I +LN S
Sbjct: 180 IWIYGADMCGNDYCFDVNLSGPIALVIGSEGRGISKLTKNKCDVLVKIPMLGNITSLNAS 239

Query: 267 NAAAVALYITQNHFAK 282
            A  + +Y       K
Sbjct: 240 VAGGMLMYEILKQRMK 255


>gi|307946264|ref|ZP_07661599.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp.
           TrichSKD4]
 gi|307769928|gb|EFO29154.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Roseibium sp.
           TrichSKD4]
          Length = 277

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 107/258 (41%), Positives = 161/258 (62%), Gaps = 5/258 (1%)

Query: 25  RNHRDYKKMQSFNQKSRHT----SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           R  RD K+   + +K             + LYG+HTV AA  N  RK  +L AT+NA  R
Sbjct: 17  RPSRDNKRAGKWTKKPAPRCPGLPPEGPILLYGLHTVEAAFANTERKRMKLYATENAQRR 76

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L  + ++    P++T+ P+ +DK+V ++AVHQG+ LE  PL +   + ++ ++L++ LD 
Sbjct: 77  LA-ERDVVVDVPIETLAPRALDKMVTRDAVHQGVILEADPLPAYGPEHLKGARLVLALDQ 135

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DPHN+GAILRSAVA   D ++TT+R++P E  VLAKSASGAL+ I ++R+ N+   + 
Sbjct: 136 VTDPHNVGAILRSAVALDADAVVTTERHAPEEGPVLAKSASGALDMIKHVRVKNMARFVS 195

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +M    F  + L SD    LE+     K  L+LG+EGKG+R   +E  +++A L MPG I
Sbjct: 196 EMQEQAFTAVALDSDGPASLEETELAPKTVLVLGSEGKGVRQGVREACSTLARLDMPGEI 255

Query: 261 KALNVSNAAAVALYITQN 278
           ++LNVSNAA +ALY+ + 
Sbjct: 256 RSLNVSNAAVLALYVARQ 273


>gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK
           1622]
          Length = 282

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 12/269 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----A 79
           R   R  +++     +        + F+YGV+ V AAL     ++ +L   +  L    A
Sbjct: 10  RGGERASEEVPQRASRGERGGGEASRFVYGVNPVLAALRARPDEVERLFLVEGQLGARAA 69

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNS 132
                        V+ V  + +  +  +  VHQG+ +E        L+       A+   
Sbjct: 70  GELLSRAREFGIRVEKVTRERLGTLA-EGGVHQGVVVELRGFKYAELEDLLEAAKALGQP 128

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD + DPHN+GAI+RSA A    G++  K  +   +  +AK+++GA+EH    R+
Sbjct: 129 PLVVVLDGIQDPHNLGAIIRSADALGAHGVVIAKDRAVQVTGTVAKASAGAVEHSRIARV 188

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N++ AL+++   G        D+K+P+     +  +AL++GAEG G+R    +      
Sbjct: 189 VNISRALEELKEAGLWVAAADVDAKEPMWSARLDGPLALVVGAEGAGVRDGVLKHCDFRL 248

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M G + +LN S +A + LY       
Sbjct: 249 RIPMAGQVGSLNASVSAGILLYEVARQRG 277


>gi|90962219|ref|YP_536135.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|301299870|ref|ZP_07206104.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821413|gb|ABE00052.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|300214881|gb|ADJ79297.1| TRNA/rRNA methyltransferase [Lactobacillus salivarius CECT 5713]
 gi|300852541|gb|EFK80191.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 248

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQT 100
            + +  F+ G H   AAL      I ++   +   A    +           V  VP   
Sbjct: 2   KEEQKDFIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTK 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D +V     HQG+ +  A     T+D +             ++LD + DPHN+G+I+R+
Sbjct: 62  LDNLV-NGQNHQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  KR +   ++V+AK+++GA+EH+P +R++NL   ++++   G    G  
Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   +       AL++G EGKG+ P  ++T   M  + M G +++LN S AA++ +
Sbjct: 181 MKG-TDFRKWSAKGATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLI 239

Query: 274 Y 274
           Y
Sbjct: 240 Y 240


>gi|254481117|ref|ZP_05094363.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2148]
 gi|214038912|gb|EEB79573.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2148]
          Length = 251

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 21/251 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVG 106
           ++YG+H V + L    + + +L   +     R+     L      P+     + +D +V 
Sbjct: 3   YIYGIHAVDSLLRQNPKSVQRLWVQQGREDKRIASLLELAQNQGVPMARESRKDLDDMV- 61

Query: 107 KEAVHQGLALET----------------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            +  HQG+  ET                   L   +D   +  L++VLD V DPHN+GA 
Sbjct: 62  -KGRHQGVVAETLSDPVHGDTQQANLWQESDLLRMVDEKDSPVLILVLDGVTDPHNLGAC 120

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA A   D ++  K  S   S  + K A GA E +P++R++N++  L  +        
Sbjct: 121 LRSADAAGVDAVVVPKDKSADLSPTVRKVACGAGEIVPFVRVTNISRTLDALKERQVWIF 180

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + +++K +        +AL++GAEG GLR  T+E    +  L M G + +LNVS A  
Sbjct: 181 GAAGEAEKSIYDNDLTGSMALVMGAEGAGLRRLTREHCDFLIKLPMAGSVSSLNVSVATG 240

Query: 271 VALYITQNHFA 281
           V L+       
Sbjct: 241 VCLFEVIRQRG 251


>gi|225871259|ref|YP_002747206.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700663|emb|CAW95241.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 248

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 10/248 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K++  ++ ++  +YGVH V+   L N   K++              D        +    
Sbjct: 2   KAKEINETKD-IVYGVHAVTESLLANTGNKLYIQEDLCGKHVDHIKDLATSKKVSISWTK 60

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            + + ++    AVHQG AL  +      LD +       ++ LL++LD + DPHN G+IL
Sbjct: 61  KKALTEMTA-GAVHQGFALRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G
Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                  P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 180 TDVTG-TPSYKWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238

Query: 272 ALYITQNH 279
            +Y    +
Sbjct: 239 LMYEVFRN 246


>gi|110680725|ref|YP_683732.1| RNA methyltransferase [Roseobacter denitrificans OCh 114]
 gi|109456841|gb|ABG33046.1| RNA methyltransferase, TrmH family, putative [Roseobacter
           denitrificans OCh 114]
          Length = 257

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 103/253 (40%), Positives = 148/253 (58%), Gaps = 7/253 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ + +   E ++L+G+H V  AL NP+R+  QL+ T NA A+L   A      
Sbjct: 5   KWVVRKEQDKKSENRETIWLFGLHAVRDALENPARQKLQLIVTLNAQAKLAG-AIEAAGI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148
             + V P+     +   +VHQG ALE  PL   +L+ V        +++LD V DPHN+G
Sbjct: 64  TPEVVDPRKFSAPLDPGSVHQGAALEVKPLNWGSLEDVCVGAEHPRVLLLDRVTDPHNVG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA  F    +I T+ +S  E+  LAKSASGALE  PY+R+ NL+D ++ +   G+ 
Sbjct: 124 AILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLSDTIRALQGMGYI 183

Query: 209 TIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  ++   LEQ I   ++  +AL+LGAEG GLR KT+ET  S+  +   G   +LNV
Sbjct: 184 VLGLDGEASDTLEQAIEGKRDRPVALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNV 243

Query: 266 SNAAAVALYITQN 278
           SNAAA+ALY TQ 
Sbjct: 244 SNAAAIALYATQR 256


>gi|290579663|ref|YP_003484055.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
 gi|254996562|dbj|BAH87163.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans NN2025]
          Length = 248

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 10/248 (4%)

Query: 41  RHTSQPEN-LFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           R+    EN   +YGVH V  +L  N   K++     +        D       P+   P 
Sbjct: 2   RYKDFTENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAEKKVPISWTPK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152
           +T+  +  K AVHQG  L  +       + +       ++ LL++LD +NDPHN G+ILR
Sbjct: 62  KTLSDMT-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSILR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A +  GII  K  +   + V+AK+++GA+EHIP  R++NL  AL K+ + GF   G 
Sbjct: 121 TADATNVTGIIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIFGT 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +   P  Q   + K+ALI+G EG+G+    ++    M  + M G +++LN S AAA+ 
Sbjct: 181 DMNG-TPSTQWNTSGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAIL 239

Query: 273 LYITQNHF 280
           +Y    + 
Sbjct: 240 MYEVFRNR 247


>gi|332522981|ref|ZP_08399233.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314245|gb|EGJ27230.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 248

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 9/239 (3%)

Query: 48  NLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +LN N   K++     +        +        +   P +T+  +  
Sbjct: 10  NDMVYGVHAVTESLNANTGNKLYIQEDLRGKNVDTIKNLARDKKVSISWAPKKTLSDMT- 68

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      L+ +        + L++VLD + DPHN G+ILR+A A    
Sbjct: 69  EGAVHQGFVLRVSAFAYSELETLIAKAEKEENPLILVLDGLTDPHNFGSILRTADATKVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  K  +   + V+AK+++GA+EH+P  R++NL+  L K+   GF   G   D   P+
Sbjct: 129 GVVIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQTLDKLKEAGFWIFGTDMDG-TPV 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   + K+ LI+G+EGKG+    ++    M  + M G +++LN   AAAV +Y    H
Sbjct: 188 QKWNTSGKLVLIIGSEGKGISTNIKKQVDEMITIPMDGHVQSLNAGVAAAVLMYEVFRH 246


>gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
           49242]
 gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
           49242]
          Length = 278

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 105/259 (40%), Positives = 147/259 (56%), Gaps = 2/259 (0%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           KD    + R      +     ++       PE + +YG H V  AL    RK+  L AT+
Sbjct: 8   KDRQPRRERPGPVRDRPRGDPSRVPFRGPSPEVVTIYGAHAVREALKARRRKLLALYATE 67

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQL 134
            AL R+  D         + V  + + + +G EAVHQGL LE  PL    + D    S +
Sbjct: 68  TALPRIA-DLARGAGVEPRLVDGRDLSRHLGDEAVHQGLLLEARPLPEAGVGDIEPKSGI 126

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD + DPHN+GAILR+A AF  D +I T+R+SP  + VLAK+ASGALEH+  + + N
Sbjct: 127 VLALDQITDPHNVGAILRTACAFGVDALIITERHSPEFTGVLAKAASGALEHVTIVSVVN 186

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L  AL ++   G+  +GL S+  +PLE       +AL+LGAEGKGLR  T+E   ++A L
Sbjct: 187 LARALDELRGAGYGVVGLDSEGAEPLETIALPKPLALVLGAEGKGLRRLTRERCDAIARL 246

Query: 255 HMPGIIKALNVSNAAAVAL 273
            +PG IK+LNVSNA A AL
Sbjct: 247 DLPGPIKSLNVSNACAAAL 265


>gi|118591205|ref|ZP_01548604.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614]
 gi|118436281|gb|EAV42923.1| tRNA/rRNA metyltransferase [Stappia aggregata IAM 12614]
          Length = 271

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 112/263 (42%), Positives = 162/263 (61%), Gaps = 2/263 (0%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLAT 74
           K       +   R  KK        R    PE  + LYG+HTV AA  N  RK  +L AT
Sbjct: 5   KKPSRPAGKPGFRGNKKFGGKPAPRRPGLPPEGPVLLYGLHTVEAAFANKDRKRLKLFAT 64

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
            NAL RL+ +  +    PV+++ P+ +D++V K+AVHQG+ LE  PL +   + ++ ++L
Sbjct: 65  DNALRRLE-ERGVKIDVPVESMMPRALDRMVTKDAVHQGMILEADPLPAYGAEHLKGARL 123

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD V DPHN+GAILRSAVA   D ++TT+R++P E +VLAKSASGAL+ I ++R+ N
Sbjct: 124 VLALDQVTDPHNVGAILRSAVALDADAVVTTERHAPEEGSVLAKSASGALDMIKHVRVKN 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +   + +M   GF  I L SD    LE+   +DK  L+LG+EGKG+R   +E     A L
Sbjct: 184 MARFIAEMKDEGFSCIALDSDGPASLEETPFSDKTVLVLGSEGKGVRQGVREACGLTARL 243

Query: 255 HMPGIIKALNVSNAAAVALYITQ 277
            MPG I++LNVSNAA ++LY+ +
Sbjct: 244 DMPGEIRSLNVSNAAVLSLYVAR 266


>gi|195978847|ref|YP_002124091.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975552|gb|ACG63078.1| tRNA/rRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 248

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 9/238 (3%)

Query: 49  LFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
             +YGVH V+   L N   K++     +        D        +     + + ++   
Sbjct: 11  DIVYGVHAVTESLLANTGNKLYIQEDLRGKNVDHIKDLATSKKVSISWTKKKALSEMTA- 69

Query: 108 EAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            AVHQG  L  +      LD +        + LL++LD + DPHN G+ILR+A A    G
Sbjct: 70  GAVHQGFVLRVSAFAYTELDELLELAQQEANPLLLILDGLTDPHNFGSILRTADATGVCG 129

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G       P  
Sbjct: 130 VIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFGTDVTG-TPSY 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    +
Sbjct: 189 KWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAILMYEVFRN 246


>gi|238926114|ref|ZP_04657874.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
 gi|238886004|gb|EEQ49642.1| tRNA/rRNA methyltransferase [Selenomonas flueggei ATCC 43531]
          Length = 272

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            L G H +  A+       +I      + +      D    H   V TV    +D +V +
Sbjct: 27  ILAGRHAIIEAIKAGRGINRILLADGVRGSGVNELRDLAREHGIMVDTVGRSKLDALVSQ 86

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG     AP+    ++ V           LL++LD + DP N+GA+LR+A A    
Sbjct: 87  DVRHQGAVAYVAPVAYVAVEEVIAGARARGEDPLLLLLDGIEDPQNLGALLRTADAAGVH 146

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ +   GF   G     ++  
Sbjct: 147 GILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRALKEQGFWIAGADMGGEEIY 206

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      + L++G+EG+G+   T++       L M G I +LN S A A+ +Y  Q   
Sbjct: 207 DRANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMMGKINSLNASVAGAILMYEAQRQR 266


>gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC
           7002]
          Length = 388

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPP 98
           T + +N  +YG H V + L +  R + ++  T              A       +  V  
Sbjct: 129 TPEEDNDLIYGKHAVLSVLES-ERPLNRIWVTSRLRHANRFHTLLQAAKNQGTVIDEVSM 187

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
             +D +     VHQG+A++TAP     L  +         S ++++ D + DPHN+GAI+
Sbjct: 188 SRLDYLT-NRGVHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPHNLGAII 246

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  +R +   ++ + K A+GALEH P  R+ NL+ A++++   GF   G
Sbjct: 247 RTAEAIGAQGMIIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYG 306

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            ++ + K L        I L++G+EG+GL   TQ+    +  + M G   +LN S AAA+
Sbjct: 307 TAAGTSKALHNIKFEGAIGLVIGSEGQGLSLLTQKHCDELVAIPMTGKTPSLNASVAAAI 366

Query: 272 ALYITQNH 279
           ALY     
Sbjct: 367 ALYEVYRQ 374


>gi|24378679|ref|NP_720634.1| putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
 gi|24376542|gb|AAN57940.1|AE014868_2 putative tRNA/rRNA methyltransferase [Streptococcus mutans UA159]
          Length = 248

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 10/248 (4%)

Query: 41  RHTSQPEN-LFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           R+    EN   +YGVH V  +L  N   K++     +        D       P+   P 
Sbjct: 2   RYKDFTENTDIVYGVHAVIESLQANTGHKLYIQNDLRGKNVDKIKDLAAEKKVPISWTPK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152
           +T+  +  K AVHQG  L  +       + +       ++ LL++LD +NDPHN G+ILR
Sbjct: 62  KTLSDMT-KGAVHQGFILHVSAFAYTEFEMLLKKAEREDNPLLLILDELNDPHNFGSILR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A +  GII TK  +   + V+AK+++GA+EHIP  R++NL  AL K+ + GF   G 
Sbjct: 121 TADATNVTGIIITKHRAVGVTPVVAKTSTGAVEHIPIARVTNLGQALDKLKAAGFWIFGT 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +   P  Q   + K+ALI+G EG+G+    ++    M  + M G +++LN S AAA+ 
Sbjct: 181 DMNG-TPSTQWNTSGKLALIIGNEGRGISHNIKKQVDEMVTIPMNGHVQSLNASVAAAIL 239

Query: 273 LYITQNHF 280
           +Y    + 
Sbjct: 240 MYEVFRNR 247


>gi|323339372|ref|ZP_08079657.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
           ruminis ATCC 25644]
 gi|323093195|gb|EFZ35782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Lactobacillus
           ruminis ATCC 25644]
          Length = 248

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 11/241 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
             Q  + F+ G H   AAL +     K+F     K+   +    A       V  VP   
Sbjct: 2   KEQKTDDFVIGRHPAMAALKSGQDINKVFVQSGLKSDAIQEIVSAARKRSIVVSQVPKTK 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D ++     HQG+ L  A      L+ +             ++LD + DPHN+G+ILR+
Sbjct: 62  LD-LLSDGQNHQGVVLAVAAFQYAELEDLFEAAAKKGEDPFFLILDGIEDPHNLGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  KR +   ++ +AK+++GA+E++P  R++NL   + ++ + G    G  
Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSTVAKTSTGAVEYVPVCRVTNLAQTVDELKNRGLWIFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               +           AL++G EGKG+    ++    M  + M G +++LN S AA++ +
Sbjct: 181 MKG-QDFRNWDAKGPTALVIGNEGKGISSLLKKKCDEMLTIPMIGHVQSLNASVAASLLI 239

Query: 274 Y 274
           Y
Sbjct: 240 Y 240


>gi|325479190|gb|EGC82287.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 234

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKE 108
           +YG   V   L+    KI++    K     ++            +  V  +  DKI   +
Sbjct: 4   IYGRKPVLDTLDTDI-KIYKAYILKQNSKLVNKIIGKLEEKNIEISFVDKRFFDKI---D 59

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+ +E        LD + + + L++LD + DPHN+GAI+RSA +F  DG++  +R 
Sbjct: 60  INHQGVMIEVESFKYENLDDLSDEKRLIILDQIEDPHNLGAIIRSAESFGFDGVVIPERR 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S ++ + K+++GA+ +I   R+ NLT +++ +   GF   GL+ ++   +++     K
Sbjct: 120 SASVTSTVYKTSAGAINNIKVYRVKNLTRSIKDLKDKGFWIYGLAGEADSSIDKADLTGK 179

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + L++G EG G+    ++    + ++ M G + +LN S AA +++Y     
Sbjct: 180 VGLVVGNEGSGISRLVRDNCDMLVNIPMLGRVNSLNASVAAGISMYELLRQ 230


>gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803]
 gi|3915411|sp|P74328|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955
 gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803]
          Length = 384

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 122/251 (48%), Gaps = 13/251 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVP 97
             +Q     LYG H V AAL+   R++ ++  T     +   R        +   V  V 
Sbjct: 117 EQAQEALDLLYGHHAVLAALD-GDRQLNRIWITSHLRHDIRYRTKIQTAKANGTVVDEVD 175

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
              +++I    A HQG+A + AP     L  +         + +L+++D + DPHN+GAI
Sbjct: 176 NFRLNQIT-HNANHQGIAAQVAPYHYWELGDLIDKAKSQSTAPVLIIIDSITDPHNLGAI 234

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A AF   G++  +R     ++ + K A+GALEH P  R+ NL+ AL+ +   GF   
Sbjct: 235 IRTAEAFGAQGMVLPQRRVAGITSTVMKVAAGALEHFPVARVVNLSRALETLKESGFWIY 294

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G  +  +  L Q    + + L++G+EG+GL   TQ+    +  + + G   +LN S AAA
Sbjct: 295 GTVAGKQTALHQADLREPMGLVIGSEGEGLSLLTQKHCDHLITIPLAGKTPSLNASVAAA 354

Query: 271 VALYITQNHFA 281
           ++LY       
Sbjct: 355 ISLYEIFRQRG 365


>gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum ATCC 27405]
 gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 1313]
          Length = 277

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 123/275 (44%), Gaps = 14/275 (5%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--- 73
              Y K + + R   K+    +K       +   + G ++V  A+    R I ++L    
Sbjct: 6   KKDYKKAKTSQRSDVKLNG--RKEERDGAKDLDRIEGRNSVLEAIK-AGRTINKILVPKG 62

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129
            K    R            V+      +DKI    A HQG+    A      +D +    
Sbjct: 63  EKEGSIRQIIALARERGIVVQETDRSNLDKISTTHA-HQGVIAYVAFKDYVEVDDILKIA 121

Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                   +++LD + D +N+G+ILR+A A    G++  KR +   +A ++K+++GA+E+
Sbjct: 122 QDKGEDPYIIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAGAIEY 181

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P  R++N++  ++ +       +G     +KP  +      +AL++G+EG+G+     E
Sbjct: 182 VPVARVTNISQTIEYLKKKNIWIVGTDLSGEKPFFEADLKGPVALVIGSEGEGMGRLVSE 241

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + ++ M G I +LN + AAA+ +Y  +    
Sbjct: 242 KCDFIVNIPMQGKISSLNAAVAAAIIMYEIRRQRN 276


>gi|253681905|ref|ZP_04862702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           D str. 1873]
 gi|253561617|gb|EES91069.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           D str. 1873]
          Length = 263

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 10/244 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102
           +     + G + V  AL +     + ++A  +    ++    +       +K V  + +D
Sbjct: 18  EEREDLIEGRNAVIEALKSDRTVEYVMIAKGSVTGSINKVVAIAKDKGIVIKEVDRKKLD 77

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
            +    + HQG+     P     ++ +            +++LD + DPHN+G+I+R+A 
Sbjct: 78  SMSITGS-HQGVIAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAE 136

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  KR +   +  + K+++GA E++   +++NL  A+  +   G    G    
Sbjct: 137 ICGVHGIIIPKRRNVGITPTVYKTSAGAAEYMKVAKVANLNRAIDNIKEKGIWVYGADMS 196

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +    Q      +AL++G+EG+G+   T+E    +  + M G I +LN S AA + +Y 
Sbjct: 197 GESYCFQTNFKGAVALVIGSEGRGVSKLTKEKCDVLVKIPMVGNITSLNASVAAGIMMYE 256

Query: 276 TQNH 279
               
Sbjct: 257 VLKQ 260


>gi|311105148|ref|YP_003978001.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310759837|gb|ADP15286.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Achromobacter xylosoxidans A8]
          Length = 245

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++    +   +      +        +  VP + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPDSIKEIYVEASRRDKRMQTFIEQAEKAGCRLHPVPMERLDGL-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +   HQG+            +   LD +    LL++LD V DPHN+GA LR+A A     
Sbjct: 65  RGTRHQGVVALAEERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A + + A GA + +PY+ ++NL   ++ +   G   +G    +   + 
Sbjct: 125 VIAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY T    
Sbjct: 185 QIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium 104]
 gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|254806514|sp|A0QAB6|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574
 gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           avium 104]
          Length = 309

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 130/270 (48%), Gaps = 13/270 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A LR NH   K+ QS  ++    ++     L G + V   L    P+  ++  L T+ A 
Sbjct: 41  AHLRPNHPAAKRAQSPPRRPAKRTEETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98

Query: 79  ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----- 131
            RL    +        +  VP   +D++ G   +HQG+AL+  P +    D +       
Sbjct: 99  ERLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAGS 157

Query: 132 -SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  
Sbjct: 158 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  LQ     G + IGL +     L+    +D + +++G+EGKGL    ++    
Sbjct: 218 RATNLTRTLQDWADRGLRVIGLDAGGDTTLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDE 277

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M G  ++LN S AA V L       
Sbjct: 278 VVSIPMAGSAESLNASVAAGVVLAEISRQR 307


>gi|307546117|ref|YP_003898596.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
           2581]
 gi|307218141|emb|CBV43411.1| RNA methyltransferase, TrmH family, group 3 [Halomonas elongata DSM
           2581]
          Length = 270

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGKE 108
           +YGVH V A +          +   +A  RL     L      K V  P  T+D++  + 
Sbjct: 19  VYGVHAVRALIERGEMPRELWVQDGDASERLAELVALARKGNAKVVNQPRDTLDRLA-QG 77

Query: 109 AVHQGLALETAPLLSPTLDAV---------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           AVHQG+     PL      ++           + LL+VLD + D HN GA LRSA A   
Sbjct: 78  AVHQGVVAFCPPLAFEAEASLWHRLQGWSVEAAPLLLVLDGITDVHNFGACLRSADAAGA 137

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  K  +   +A + K A GA E +P  R++NL  +L +M   G    G + +++  
Sbjct: 138 HGVVVPKDRAAPLNATVRKVACGAAESVPVYRVTNLARSLARMKELGVWVTGTAGEAEAS 197

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +         AL++GAEGKG+R  T+E    +  L M G + +LNVS A  + L+     
Sbjct: 198 VYDADFTGATALVMGAEGKGMRRLTREACDGLVKLPMAGQVASLNVSVATGICLFEAVRQ 257

Query: 280 FA 281
            A
Sbjct: 258 RA 259


>gi|119776198|ref|YP_928938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella
           amazonensis SB2B]
 gi|119768698|gb|ABM01269.1| RNA methyltransferase TrmH, group 3 [Shewanella amazonensis SB2B]
          Length = 240

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 10/238 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           +G+H V + L +   ++ +L   T     R+     +        +    +T+D+   + 
Sbjct: 2   FGIHAVESVLKHAPERVLELWLMTGRQDERVLPLLEIAQNWGIKAQQAARKTLDEKA-ES 60

Query: 109 AVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+ +   P   L    L+A+ ++     L++LD V DPHN+GA LR+A A    G+
Sbjct: 61  TQHQGIIIRVRPAKVLTENDLEALLDATETPFLLILDGVTDPHNLGACLRNADAAGVHGV 120

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  ++K A GA E +P  +++NL   ++++   G    G + ++   L +
Sbjct: 121 IVPKDNSAGLTPTVSKVACGAAETVPLFQVTNLARTMKRIQERGVWIAGTAGEADSTLYE 180

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +A+ +GAEGKGLR  ++E   ++  + M G + +LNVS A  + L+      
Sbjct: 181 ANLKGPLAIAMGAEGKGLRRLSREGCDTLISIPMAGSVSSLNVSVATGICLFEAVRQR 238


>gi|251799664|ref|YP_003014395.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           JDR-2]
 gi|247547290|gb|ACT04309.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
           JDR-2]
          Length = 251

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 12/248 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQ 99
               +   + G H V  AL +  R I ++   + A   L          H   V+ V  +
Sbjct: 3   ERYNQEEMIAGKHPVMEALRSG-RDINKIWIAEGAQKSLTQPIVAEAKQHGVIVQFVDKR 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152
            +D +V +   HQG+  + A      ++        +  +  L++LD + DPHN+G+ILR
Sbjct: 62  KLDTMV-EGVQHQGVVAQAAAFAYAEIEDLLARARELNETPFLLILDEIEDPHNLGSILR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G+I  KR S   +A + K+++GA EH+P  R++NL   + ++   G    G 
Sbjct: 121 TAECTGVHGVIIPKRRSVGLTATVLKTSAGAAEHVPVARVTNLAQTIDRLKEEGVWVAGT 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
              + + + +   +  +A+++G EGKG+    +E    +  L M G + +LN S AA V 
Sbjct: 181 DVSAPQDVYKTKFDLPLAIVIGNEGKGMGRLIKEKCDFLVKLPMHGRLNSLNASVAAGVL 240

Query: 273 LYITQNHF 280
           +Y      
Sbjct: 241 MYEVVRQR 248


>gi|317495868|ref|ZP_07954231.1| RNA methyltransferase [Gemella moribillum M424]
 gi|316914045|gb|EFV35528.1| RNA methyltransferase [Gemella moribillum M424]
          Length = 270

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/268 (27%), Positives = 137/268 (51%), Gaps = 17/268 (6%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPE----NLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +++N++ YK+++S N++ ++    E       + G + +  A+ +  R+I ++L  +   
Sbjct: 1   MKKNNKYYKELRSKNKEEKNNQNTEVDADKEVIAGRNAILEAIKSG-REINKILFQEGIE 59

Query: 79  A---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---- 131
               +  +          + VP + +D        HQG+    AP     LD V N    
Sbjct: 60  KGRLKAIFSIANEKKIVCQEVPKRKLDN--STTERHQGVIAFVAPYNYFELDEVLNKIEI 117

Query: 132 --SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +  L++LDH+ DPHN+GAI+RSA A    G+I  KR +   S    K+++GA+EH+P 
Sbjct: 118 NKNTTLLLLDHIEDPHNLGAIIRSAEASGVKGVIIPKRRAAVVSQTAVKASAGAIEHMPV 177

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           IR+S+L DA++K+   GF   G +  +  +   +  K+  + +++G EG+G+        
Sbjct: 178 IRVSSLIDAIKKLKEKGFWIAGTTLTERSEDYTKIAKDVPLVIVVGNEGEGMSKVVTNEC 237

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
             + HL M G +++LNVS AA + +Y  
Sbjct: 238 DFLYHLPMLGKVQSLNVSVAAGIVMYER 265


>gi|294789060|ref|ZP_06754300.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
           ATCC 29453]
 gi|294483162|gb|EFG30849.1| RNA methyltransferase, TrmH family, group 3 [Simonsiella muelleri
           ATCC 29453]
          Length = 249

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 112/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H ++A L   ++ I +L   +N      R   +        V       ++ +  
Sbjct: 6   LIYGFHAINARLWQNAKSIIELYILENKNDVRTREVLEKAAQENVRVHFADTDRLNAMA- 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K A HQG+            L   LD +R    L+VLD + DPHN+GA LR+A A     
Sbjct: 65  KGARHQGVVGFIDASKNHVHLEDVLDNLREPAFLLVLDGITDPHNLGACLRTADAMGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   +G     +  L 
Sbjct: 125 VIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWVVGTDMGGEADLF 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A ++G EG G+R  T+E   ++  + M G ++++N+S +A + L  T+   
Sbjct: 185 HYDIPQAVAWVMGNEGAGMRRLTREHCDALVSIPMFGTVQSMNISVSAGMVLAETRRQR 243


>gi|260430943|ref|ZP_05784914.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414771|gb|EEX08030.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 257

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 97/249 (38%), Positives = 145/249 (58%), Gaps = 7/249 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            +++R  +  E ++L+G+H V  AL NP R+  +L+ T+NA  +L  DA        + V
Sbjct: 10  KEQARKAAGSETVWLFGLHAVRDALMNPKRQKLRLIVTRNAQDKLA-DAIAASGIEPELV 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153
             +     +   +VHQG+ALE  PL    L      R +  +++LD V DPHN+GAILRS
Sbjct: 69  DARRFTAPIDPGSVHQGVALEVKPLEWGGLAENCIGRENPRVLLLDRVTDPHNVGAILRS 128

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + GF  +GL 
Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFLVLGLD 188

Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++ + +E  +       +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 189 GEADQTIEAALDGKRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAA 248

Query: 271 VALYITQNH 279
           +ALY +Q H
Sbjct: 249 IALYASQPH 257


>gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
 gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 270

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107
           +YG+H VSA L+   ++I +L   +N    RL           VK +      ++ +  +
Sbjct: 27  IYGIHAVSAVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86

Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   +       L   L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 87  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 205 QEIDLTGDIAIVLGSEGGGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264


>gi|23097556|ref|NP_691022.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
 gi|22775779|dbj|BAC12057.1| tRNA:rRNA methyltransferase [Oceanobacillus iheyensis HTE831]
          Length = 248

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 120/243 (49%), Gaps = 15/243 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102
           +N  + G + V  AL +  R + +++ T+        +++  A       V+ VP   +D
Sbjct: 2   DNEVIMGRNPVMEALKSG-RSVNKVMVTEQIQGSTFQKINQLAREAGTI-VQKVPRSKLD 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  +   HQG+    A     +LD +             ++LD + DPHN+G+ILRSA 
Sbjct: 60  QM--ELGNHQGVVAYVASYTYASLDDLFDRANERGEDPFFILLDELEDPHNLGSILRSAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  KR S   +A +AK+A+GA+EHIP +R++N+++ + ++       +G  ++
Sbjct: 118 ATGVHGVIIPKRRSVGLTATVAKTAAGAIEHIPVVRVTNMSNTIDELKERNVWIVGTEAE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +   Q   +  I +++G EGKG+    ++       L M G + +LN S A  + LY 
Sbjct: 178 ADQDYRQLDGSLPIGIVIGNEGKGMSRLVRKKCDWTVGLPMVGQVSSLNASVACGLLLYE 237

Query: 276 TQN 278
              
Sbjct: 238 VYR 240


>gi|55820190|ref|YP_138632.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55822078|ref|YP_140519.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|116627048|ref|YP_819667.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMD-9]
 gi|55736175|gb|AAV59817.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55738063|gb|AAV61704.1| tRNA/rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|116100325|gb|ABJ65471.1| rRNA methylase [Streptococcus thermophilus LMD-9]
 gi|312277511|gb|ADQ62168.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           thermophilus ND03]
          Length = 247

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 119/247 (48%), Gaps = 9/247 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + T +     +YGVH V+ +L  N   K++     +                 +   P +
Sbjct: 2   KTTKESILDIVYGVHAVTESLEANTGNKLYIQDDLRGKNVDAIKALAAEKKVSISWTPKK 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
           T+  + G  AVHQG  L  +      L  +        + L+++LD +NDPHN G+ILR+
Sbjct: 62  TLSDMTG-GAVHQGFVLRVSEFAYSDLSVIMDKAEQEENPLILILDGLNDPHNFGSILRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  K  +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G  
Sbjct: 121 ADATQVTGVIIPKHRAVGVTPVVAKTSTGAVEHIPIARVTNLSQTLDKLKEAGFWVFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D      +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +
Sbjct: 181 MDGTAS-HKWNTAGKLALIIGNEGKGISANIKKQVDEMITIPMGGHVQSLNASVAAAVLM 239

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 240 YEVYRNR 246


>gi|238855653|ref|ZP_04645953.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           269-3]
 gi|260664905|ref|ZP_05865756.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|282933602|ref|ZP_06338971.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|313472548|ref|ZP_07813038.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           1153]
 gi|238831719|gb|EEQ24056.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           269-3]
 gi|239529985|gb|EEQ68986.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           1153]
 gi|260561388|gb|EEX27361.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|281302257|gb|EFA94490.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
          Length = 251

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNP-SRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTID 102
           +  F++G H     L N  + KI ++      +   A   +         V+ VP   +D
Sbjct: 5   KGDFVFGRHAGIDFLKNESADKINKVFLQNGVQTEFANQVYGLAKKKHLIVQEVPKNKLD 64

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+V  +A HQGL L  +      LD +      + +  L++LD + DPHN+G+ILRSA A
Sbjct: 65  KLV-PDANHQGLVLAISSFEYADLDDLVEKIADKENPFLLMLDSIEDPHNLGSILRSADA 123

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGII  KR +   ++V+AK+++GA++H+P  R++NL    +++   G+   G + + 
Sbjct: 124 TGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEG 183

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +         K  L++G EGKG+ P   +       + M G +++LN S A  V LY  
Sbjct: 184 -QDYRYWDTKGKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQM 242

Query: 277 QNH 279
            N+
Sbjct: 243 LNN 245


>gi|254504591|ref|ZP_05116742.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
           DFL-11]
 gi|222440662|gb|EEE47341.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
           DFL-11]
          Length = 275

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 104/233 (44%), Positives = 149/233 (63%), Gaps = 1/233 (0%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
              + LYG+HTV AA  N  RK  +L AT+NA  RL  +  +    PV+   P+ +D++V
Sbjct: 40  EGPVLLYGLHTVEAAFANKDRKRLKLYATENAKNRLQ-ERGVVIDVPVEDKRPKELDRMV 98

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            K+AVHQG+ LE  PL +   + ++ ++L++ LD V DPHN+GAILRSAVA   D ++TT
Sbjct: 99  TKDAVHQGMILEADPLPAYGAEHLKGARLILALDQVTDPHNVGAILRSAVALDADAVVTT 158

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R++P E  VLAKSASGAL+ I ++R+ N+   + +M   GF  I L SD    LE    
Sbjct: 159 ERHAPEEGPVLAKSASGALDMIKHVRVKNMARFITEMKEQGFGCIALDSDGHASLEDTDF 218

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            DK  L+LG+EGKG+R   +E    +A L MPG I++LNVSNAA ++LY+ + 
Sbjct: 219 TDKTVLVLGSEGKGVRQGVREACGLLARLDMPGEIRSLNVSNAAVLSLYVARQ 271


>gi|270158538|ref|ZP_06187195.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289166630|ref|YP_003456768.1| enzyme [Legionella longbeachae NSW150]
 gi|269990563|gb|EEZ96817.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288859803|emb|CBJ13784.1| putative enzyme [Legionella longbeachae NSW150]
          Length = 250

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++YG+H VSA L NP R   +L  +   ++   +   D  +     ++ V    +++   
Sbjct: 5   YVYGLHAVSALLANPHRMTKKLYVSLDREDNRLQEIIDKAMQANINIEKVSMHKMNQRFA 64

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+    + L           L++ ++  L+++LD + DPHN+GA LR+A A   
Sbjct: 65  -DFTHQGVVACASSLPEYNESHLLALLESSKHPALILILDGITDPHNLGACLRTADATGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  K  S S + V++K A GA E +P +R++NL  +++ +   G    G + ++   
Sbjct: 124 DFVMIPKDKSASITPVVSKVACGAAESVPLVRVTNLVRSIKLLKEHGVWVYGAAGEATGT 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L Q      IA++LGAEG+GLR  T+E   S+  L M G + +LNVS A  V+LY     
Sbjct: 184 LYQTDCTSAIAIVLGAEGEGLRRLTRENCDSLFSLPMLGSVDSLNVSVATGVSLYEILRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|227891225|ref|ZP_04009030.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867099|gb|EEJ74520.1| tRNA/rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 248

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQT 100
            + +  F+ G H   AAL      I ++   +   A    +           V  VP   
Sbjct: 2   KEEQKNFIIGRHPAMAALKKKDSNINKVFVQEGLKADAIQEIYTLAKARKLVVSRVPKTK 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D +V     HQG+ +  A     T+D +             ++LD + DPHN+G+I+R+
Sbjct: 62  LDNLV-NGQNHQGVVIAIASYSYATIDDLFEKARSKNEDPFFLILDGIEDPHNLGSIMRT 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  KR +   ++V+AK+++GA+EH+P +R++NL   ++++   G    G  
Sbjct: 121 ADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVVRVTNLVQTVKELKEQGVWIFGTD 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   +       AL++G EGKG+ P  ++T   M  + M G +++LN S AA++ +
Sbjct: 181 MKG-TDFRKWSAKGATALVIGNEGKGISPLLKKTCDEMLTIPMVGHVQSLNASVAASLLI 239

Query: 274 Y 274
           Y
Sbjct: 240 Y 240


>gi|116495758|ref|YP_807492.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|239630169|ref|ZP_04673200.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|116105908|gb|ABJ71050.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|239527781|gb|EEQ66782.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 259

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 14/252 (5%)

Query: 37  NQKSRHTSQPE-NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPF 91
            +K + T++ + + F++G H V AAL    +  I +L      K+   +           
Sbjct: 2   AKKPQATTEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKI 61

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            V T P Q +D ++  +  HQG+ L   P    TLD +             ++LD++ DP
Sbjct: 62  LVSTAPKQKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G+ILR+A A    G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +  
Sbjct: 121 HNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKE 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G + D  +   +       AL++G EGKG+ P   +   +   + M G +++LN
Sbjct: 181 RGMWVFGTAMDG-QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLN 239

Query: 265 VSNAAAVALYIT 276
            S AA + +Y  
Sbjct: 240 ASVAAGILMYQA 251


>gi|188584816|ref|YP_001916361.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349503|gb|ACB83773.1| RNA methyltransferase, TrmH family, group 3 [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 247

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 13/238 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G + V  A+   +RK+F++  +K++              H   +  VP   +DK+V    
Sbjct: 9   GKNPVVEAIR-GNRKVFRIYISKDSNKNFQDEMLKLAQQHNINLDKVPLDRLDKMVPTTE 67

Query: 110 VHQGLALETAPLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            HQG+  ET P     LD V        +    L++LDH+ DP N GAI+R+A A   DG
Sbjct: 68  -HQGIVAETEPFKYSQLDTVLKGFDYNNQKPLTLLILDHLTDPQNFGAIIRTADAVGVDG 126

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   +  + K++SGA EH+P I++SNL   + K+       +G   D  + + 
Sbjct: 127 VIIPKRRSVDVNPTVMKASSGAAEHVPIIKVSNLRQTISKLKEQWIWILGTDIDGDRGIF 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +E  N  +AL++G E  G+ P  ++    +A++ M G + +LN S A AV LY     
Sbjct: 187 EENYNIPLALVVGNEASGMSPLVKKECDFIANIPMIGRVNSLNASVATAVVLYEIYRQ 244


>gi|218441056|ref|YP_002379385.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7424]
 gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7424]
          Length = 310

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/273 (27%), Positives = 136/273 (49%), Gaps = 22/273 (8%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L R +   K + + +  S+ T   +   +YG H V AAL    R+I ++      + +L 
Sbjct: 25  LERRYAKPKPVGT-SVSSQDTEVEDPDLIYGRHPVIAALE-GDRQINKIWV----MPKLR 78

Query: 83  WDANL--------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----- 129
           +D+           +   +  V P  + +I  K A HQG+  + +P     L+ +     
Sbjct: 79  YDSRFHSLLTQAKANGTVIDEVDPHRLSQIT-KGANHQGIVAQISPYAYVELEELIEQAK 137

Query: 130 --RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              ++ ++++ D + DPHN+GA++R+  A    G++  +R +   ++ + K A+GALEH+
Sbjct: 138 ARSSAPVILIADGITDPHNLGAMIRTTEAMGAQGLVIPQRRAAGITSTVMKVAAGALEHL 197

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  R+ NL+ AL+++   GF   G  +DS K L        + L++G+EG+GL   TQ++
Sbjct: 198 PVARVVNLSRALEQLKEAGFWLYGTMADSGKLLHTIDFKGAVGLVVGSEGEGLSLLTQKS 257

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++  + + G   +LN S A A+ALY      
Sbjct: 258 CDALVSIPLAGKTPSLNASVATAIALYEVFRQR 290


>gi|85713280|ref|ZP_01044303.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
 gi|85692898|gb|EAQ30873.1| RRNA methylase, SpoU family protein [Idiomarina baltica OS145]
          Length = 248

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107
           ++G+H V + L     ++ +L  ++        +            + +P Q +DK    
Sbjct: 7   VFGLHAVRSVLTQHPDRLIELFVSRERQDASVAEVIGQAEAIGIRPQWIPRQALDKRAEF 66

Query: 108 EAVHQGLALETAPLL-------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+      L        S  ++  + + L +VLD+V DPHN+GA +R+A A    
Sbjct: 67  -GNHQGVVATIKALPPLNENDFSTLIEKAQGAPLFLVLDNVTDPHNLGACMRTADAAGAT 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  K  S   +  + K A GA+++IP + ++NL  AL+ +       +G + ++ K L
Sbjct: 126 AVVVPKDKSAQITPTVRKVACGAVDNIPLVVVTNLARALRTLQDLNVWVVGTAGEADKSL 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQN 278
            Q      +AL++GAEGKG+R  T+ET   +A + + G + +LNVS A+ V L+    Q 
Sbjct: 186 YQIDFKGPLALVMGAEGKGMRRLTRETCDELASIPLDGSVSSLNVSVASGVCLFEAVRQR 245

Query: 279 H 279
           H
Sbjct: 246 H 246


>gi|331701828|ref|YP_004398787.1| TrmH family RNA methyltransferase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129171|gb|AEB73724.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus buchneri
           NRRL B-30929]
          Length = 266

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 125/256 (48%), Gaps = 13/256 (5%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHP- 90
           +S + +S  +      F+ G H V AAL   NP  K+F     K+    +     L H  
Sbjct: 6   RSQDHRSDDSQDQPEEFVIGRHPVVAALKSENPVNKLFIQSGIKDDDNIISEIMKLAHKK 65

Query: 91  -FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVN 142
              +  VP Q +DK+      HQG+ L  A     T+D +  +          ++LD++ 
Sbjct: 66  RLVISKVPKQKLDKL-SNNQNHQGVVLSIAAFKYATIDDLFTNAKKQAVEPFFVILDNIE 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+G+I+R+A A    GII  K  +   +A ++K+++GA+E +P  R++NL+  ++++
Sbjct: 125 DPHNLGSIIRTADAAGVSGIIIPKHRAVGLTATVSKTSAGAIERVPVARVTNLSATIKEL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G    G          +      IA+I+G EGKG+ P  ++    M  + M G I++
Sbjct: 185 KQRGMWVFGTDVSG-TDYRRWDAKGSIAVIIGNEGKGISPLLKKQVDEMLTIPMVGDIQS 243

Query: 263 LNVSNAAAVALYITQN 278
           LN S AA++ +Y   N
Sbjct: 244 LNASVAASILIYQGFN 259


>gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 313

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 26/291 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++    +H  KL +  RD         + RH  +     + G + V   L
Sbjct: 34  KGPTPKAEDRVYHA--AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECL 82

Query: 62  NN--PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           ++  P+  ++    TKN  ARL     + H    P+  V    +D++ G   +HQG+ L+
Sbjct: 83  HSKVPATSLYIAEGTKN-DARLSEAVQMAHRRGIPLIEVARHELDRMTG-NGMHQGIGLQ 140

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +  +           +++VLD++ DP N+GA++RS  AF   G++  +R S 
Sbjct: 141 IPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSA 200

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           S +AV  ++++G    +P  + +N+T AL++    G+Q +GL +     L+       + 
Sbjct: 201 SVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVV 260

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           +++G+EGKG+    +ET  S+  + M   +++LN S AA V L  +  Q  
Sbjct: 261 IVVGSEGKGISRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQRR 311


>gi|319405864|emb|CBI79496.1| tRNA/rRNA metyltransferase [Bartonella sp. AR 15-3]
          Length = 276

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 129/258 (50%), Positives = 171/258 (66%), Gaps = 9/258 (3%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP------ENLFLYGVHTVSAALNNPSRKIF 69
           +DS YA+LRR +RD K   SF Q S +  QP        ++LYG+H V AAL NP R + 
Sbjct: 7   QDSRYARLRRQYRDIKG--SFFQSSTYVKQPFIPLQKAQIYLYGIHPVHAALKNPRRILR 64

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L AT NAL RL+ + +   P  + +  P+ ++  VG EAVHQG+ LET PL S +L  +
Sbjct: 65  HLYATPNALKRLNINESNI-PCSITSCSPKKLETFVGSEAVHQGIVLETEPLKSHSLSEL 123

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N+ L++V+D + DPHN+GAI+RSAVAF    IITT R+SP ES VLAK+ASGALE I Y
Sbjct: 124 TNTNLIIVMDQITDPHNVGAIMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEY 183

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I + NL+ AL+++    F + GL S+   PLE  +  +KI+LILGAEGKGLR KT+E   
Sbjct: 184 ITVHNLSKALKELQQMNFISFGLDSEGGFPLETALTGNKISLILGAEGKGLRQKTRENVY 243

Query: 250 SMAHLHMPGIIKALNVSN 267
           S+  L +PG IK+LNVSN
Sbjct: 244 SLVRLDLPGDIKSLNVSN 261


>gi|291541741|emb|CBL14851.1| rRNA methylase, putative, group 3 [Ruminococcus bromii L2-63]
          Length = 252

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQT 100
           ++ +   + G + VS A+ +  R I ++L  K   +               PVK V    
Sbjct: 9   TEQKPDVIAGRNPVSEAVRSN-RPIDKILVAKGEKSGAIVGILAKARDKKIPVKEVDRTK 67

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D + G  A HQG+    A     T+D +         +  ++VLD V DPHN+GAI+R+
Sbjct: 68  LDYVSG-GATHQGIVAFAAAKDYSTVDDILEYAESRGEAPFVVVLDEVEDPHNLGAIIRT 126

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A      GII  KR S   S  +AK+++GA+E++   R++N+   L ++   G    G  
Sbjct: 127 AECAGVHGIIIPKRRSAGLSYTVAKASAGAIEYMRVARVTNIAVTLDELKEKGVWVYGAD 186

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D     ++   +   A+++G EGKG+    +E    +A L M G I +LN S AA + +
Sbjct: 187 MDG-TDYDECDFSGACAIVIGNEGKGISRLVREKCDVIASLPMKGQINSLNASVAAGILM 245

Query: 274 YITQNHF 280
           Y    + 
Sbjct: 246 YKAMKNR 252


>gi|301067314|ref|YP_003789337.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|300439721|gb|ADK19487.1| rRNA methylase [Lactobacillus casei str. Zhang]
          Length = 259

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 14/252 (5%)

Query: 37  NQKSRHTSQPE-NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPF 91
            +K + T++ + + F++G H V AAL    +  I +L      K+   +           
Sbjct: 2   AKKPQATTEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKI 61

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            V T P Q +D ++  +  HQG+ L   P    TLD +             ++LD++ DP
Sbjct: 62  LVSTAPKQKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G+ILR+A A    G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +  
Sbjct: 121 HNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKE 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G + D  +   +       AL++G EGKG+ P   +   +   + M G +++LN
Sbjct: 181 RGMWVFGTAMDG-QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDATIAIPMVGHVQSLN 239

Query: 265 VSNAAAVALYIT 276
            S AA + +Y  
Sbjct: 240 ASVAAGILMYQA 251


>gi|149183933|ref|ZP_01862318.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
 gi|148848356|gb|EDL62621.1| tRNA/rRNA methyltransferase [Bacillus sp. SG-1]
          Length = 247

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           + F+ G + V  AL +  R I ++   + +                  V+ VP Q I+ +
Sbjct: 3   SEFIAGRNPVLEALKSG-RDINKIWIAEGSQKGSMGQITSLAKEKKVLVQFVPKQKIEGM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQG+  + A      +D +             ++LD + DPHN+G+I+R+A A 
Sbjct: 62  VRD--NHQGVVAQVAAYQYAEMDELYARAEQKGEIPFFLMLDELEDPHNLGSIMRTADAS 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+EHIP  R++NL   + ++   G    G  +   
Sbjct: 120 GVHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLAQTIDELKERGVWVAGTDAKGA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +      I L++G+EGKG+    ++    +  + M G + +LN S AA++ +Y   
Sbjct: 180 DDYRRLDGTLPICLVIGSEGKGIGRLIRDKCDFLIKMPMVGHVTSLNASVAASILMYEVY 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
 gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
          Length = 273

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 12/260 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--- 89
           M+  + +S+   +    ++YGV+ V  AL     ++ +L   +  L        L     
Sbjct: 1   MRDRSSQSQEPRERGERYVYGVNPVLEALRARPDEVERLFIVEGQLGSKAAAEILSRARD 60

Query: 90  -PFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHV 141
                + V  + +  +  +  VHQG+A E         P L     A   + L++VLD +
Sbjct: 61  SGIRTERVARERLTTLA-EGGVHQGVAAELRGFEYVDVPDLLEAAKASGRAPLVVVLDGI 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+GAI+RSA A    GI+  K  +   + V+AK+++GA+EH P  R+ N++ AL++
Sbjct: 120 QDPHNLGAIIRSAHALGAHGIVIGKDRAVQVTGVVAKASAGAVEHCPIARVVNISRALEE 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G       + SK+PL     +  +AL++GAEG G+R    +       + M G + 
Sbjct: 180 LKEAGLWVAAADTHSKEPLWGARLDGPLALVVGAEGAGVREGVLKHCDFRLGIPMVGQVG 239

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN S +AAV LY       
Sbjct: 240 SLNASVSAAVLLYEVARQRG 259


>gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis C231]
          Length = 313

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 26/291 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++    +H  KL +  RD         + RH  +     + G + V   L
Sbjct: 34  KGPTPKAEDRVYHA--AHKRKLEKQRRD---------QGRHKKEETAELVVGRNPVVECL 82

Query: 62  NN--PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           ++  P+  ++    TKN  ARL     + H    P+  V    +D++ G   +HQG+ L+
Sbjct: 83  HSKVPATSLYIAEGTKN-DARLSEAVQMAHRRGIPLIEVARHELDRMTG-NGMHQGIGLQ 140

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +  +           +++VLD++ DP N+GA++RS  AF   G++  +R S 
Sbjct: 141 IPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSA 200

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           S +AV  ++++G    +P  + +N+T AL++    G+Q +GL +     L+       + 
Sbjct: 201 SVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQVVGLDAGGDATLDTYDGKGPVV 260

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           +++G+EGKG+    +ET  S+  + M   +++LN S AA V L  +  Q  
Sbjct: 261 IVVGSEGKGISRLVRETCDSIMSIPMARWVESLNASVAAGVVLSEFARQRR 311


>gi|30248368|ref|NP_840438.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
           19718]
 gi|52783307|sp|Q82XD1|RLMB_NITEU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|30138254|emb|CAD84262.1| putative tRNA/rRNA methyltransferase [Nitrosomonas europaea ATCC
           19718]
          Length = 260

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 115/238 (48%), Gaps = 9/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKIVG 106
           +++G H +++ L      I ++    N    R     +L      + +      + K+ G
Sbjct: 6   YIFGFHAITSRLRQHPDSIKEIYLDTNRHDQRARDLMSLAETTSTRLILCEQDRLCKMTG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+A     L     L   L+ +    LL+VLD V DPHN+GA LR A AF    
Sbjct: 66  TTR-HQGVAAHVTKLRRYATLEDLLEGLTEPALLLVLDGVKDPHNLGACLRVADAFGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  +   SA + K ASGA++ +P+  ++NL   L+++   G   +G ++D+   L+
Sbjct: 125 VVVPKDRAVGLSATVHKVASGAVDTVPFFAVTNLARTLRELKEMGLWIVGTAADAPDTLD 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +A +LGAE  G+R  T+E    +  + M G I++LNVS +A + L+ T   
Sbjct: 185 SVTLTRPLAWVLGAEDGGMRRLTREACDLLVSIPMSGSIESLNVSVSAGICLFETFRQ 242


>gi|227533680|ref|ZP_03963729.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227188664|gb|EEI68731.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 259

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 14/252 (5%)

Query: 37  NQKSRHTSQPE-NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPF 91
            +K + T++ + + F++G H V AAL    +  I +L      K+   +           
Sbjct: 2   AKKPQATTEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKI 61

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            V T P Q +D ++  +  HQG+ L   P    TLD +             ++LD++ DP
Sbjct: 62  LVSTAPKQKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G+ILR+A A    G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +  
Sbjct: 121 HNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKE 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G + D  +   +       AL++G EGKG+ P   +   +   + M G +++LN
Sbjct: 181 RGMWVFGTAMDG-QDYRKWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLN 239

Query: 265 VSNAAAVALYIT 276
            S AA + +Y  
Sbjct: 240 ASVAAGILMYQA 251


>gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
           carboxydivorans Nor1]
 gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
           carboxydivorans Nor1]
          Length = 248

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKI 104
              + G + V  AL +  R I ++L  K     L R            V+ V    +D +
Sbjct: 3   EDIIAGRNVVMEALRSG-RAINKILVAKGERHGLMREIVGLAREQGLVVQEVDAAKLDAL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+    AP+    +D +         +  L++LD + DPHN+GAILR+A A 
Sbjct: 62  A-MGVRHQGVVAMVAPVAYVDVDEILVQAQTKGEAPFLVLLDELEDPHNVGAILRTADAT 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++  KR S   SA +AK+++GA+E++P  RI N+   L+K+   G   +G      
Sbjct: 121 GVHGVLLPKRRSCPLSATVAKTSAGAIEYVPVARIGNIVQTLEKLKKAGLWVVGADMAGD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K   +      + +++G+EG+G+   T+E    +  + M G + +LN S A ++ LY   
Sbjct: 181 KAYYETDLTGPLVVVVGSEGRGMGRLTREACDFLVRIPMRGRLSSLNASVACSLILYEVL 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|53803949|ref|YP_114407.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757710|gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus
           capsulatus str. Bath]
          Length = 250

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 11/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTV--PPQTIDKIVGK 107
           ++G+H   AAL+    KI +     + +  RL   A       V+ V    + +D++   
Sbjct: 7   VWGIHAAEAALDYSPDKIVKAWLDDHRMQNRLQAVATRLDELGVEIVRADRKRLDRLADP 66

Query: 108 EAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+ LE           L  TLDA     L +VLDHV DPHN+GA LR+  A    
Sbjct: 67  RK-HQGILLELDLPGEQGEAELLDTLDAADGHPLYLVLDHVQDPHNLGACLRTCDAAGVK 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++ TK  S   +  +AK ASGA E +P  R++NL   L +    G+  +G + ++++ L
Sbjct: 126 GLVVTKDQSVGLTPTVAKVASGAAETVPVYRVTNLARCLDRFKQRGYWVVGAAGEAERTL 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      + +++GAEG GLR  T+E    +  + M G +++LN+S A  + LY      
Sbjct: 186 YELDLRLPLVVVMGAEGVGLRRLTRERCDFLLRIPMVGGVESLNLSVATGIVLYEVMRQR 245

Query: 281 AK 282
           ++
Sbjct: 246 SR 247


>gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
 gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
          Length = 323

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 136/293 (46%), Gaps = 24/293 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           + S  +S ++        ++    HR    +     K       ++  +YG H V +AL 
Sbjct: 28  IPSSIRSPRVGERDKKPVSRGTSPHRIDPHVSPVASKP----PEDSDLIYGRHPVLSALE 83

Query: 63  NPSRKIFQLLATKNALARLDWDANLPH--------PFPVKTVPPQTIDKIVGKEAVHQGL 114
              R + ++  T     RL +D    H           +  V P+ +D+I  + A HQG+
Sbjct: 84  -GERGLNRIWIT----TRLRYDHRFHHLLLQAKENGTVIDEVEPKRLDQITDR-ANHQGI 137

Query: 115 ALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A + AP     L  +          +++V + + DPHN+GAI+R+A A    G++  +R 
Sbjct: 138 AAQVAPHDYMELSDLIAQAKSVTDPVIVVAEGITDPHNLGAIIRTAEAIGAQGLVIPQRR 197

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   ++ + K A+GALE+    R+ NL+ AL+++   GF   G ++   +PL     +  
Sbjct: 198 ASGITSTVMKVAAGALENFSVARVVNLSRALEELKEAGFWIYGTATTGSEPLHTVKFSGP 257

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           I L++G+EG+GL   TQ +   +  + + G   +LN S AA +ALY      +
Sbjct: 258 IVLVIGSEGEGLSMLTQRSCDVLVSIPLLGKTPSLNASVAAGMALYEIYRQRS 310


>gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
 gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
          Length = 335

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 20/256 (7%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF-------- 91
            +     +N  +YG H V +AL N  R + ++  T     RL +D    +          
Sbjct: 73  PKPQEDNDNDIIYGRHPVLSALQN-QRGLNRIWVT----PRLRYDPRFHNLILQAKDNGA 127

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPH 145
            +  V  + +D+I   +A HQG+A + AP     L  +          +++V D + DPH
Sbjct: 128 VIDEVDTKRLDQITD-QANHQGIAAQIAPYSYIDLYELIAQAKTVTDPVIVVADSITDPH 186

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R+A A    G++  +R +   ++ + K A+GALE+ P  R+ NL  AL+ +   
Sbjct: 187 NLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARVVNLGRALEDLKEA 246

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G ++   +PL        I L++G+EG+GL   TQ +   +  + + G   +LN 
Sbjct: 247 GFWIYGTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLMGKTPSLNA 306

Query: 266 SNAAAVALYITQNHFA 281
           S AA +ALY      +
Sbjct: 307 SVAAGMALYEIFRQRS 322


>gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           stomatis DSM 17678]
          Length = 244

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 13/242 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            + G + +  AL N  R I +++    +K    +        +   ++ V    +D++  
Sbjct: 3   IIEGRNPIIEALKNN-RSIEKIMVNKASKEGSIKKILAMAKENKVIIQEVDRHKLDEMSE 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+   T+      LD +             ++LD + DPHN+G+I+R+A A   
Sbjct: 62  SHA-HQGVIAITSDYRYYDLDEILEIPKERGEDPFFIILDGITDPHNLGSIIRTADAVGA 120

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  KR S   + ++AK+++GA+E++P  +++N+ + ++ +   G     +  D    
Sbjct: 121 HAVIIPKRRSVQITPIVAKASAGAVEYLPVCKVTNIVNTIKTLKENGLWIAAVDMDG-HT 179

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             Q+     + L++G+EG+G+    ++       + M G + +LN S A  + LY     
Sbjct: 180 FYQQNLGGPLGLVVGSEGEGISRLVKQNCDFTVSMPMSGNVTSLNASVAGGILLYEVYRQ 239

Query: 280 FA 281
             
Sbjct: 240 RN 241


>gi|238897532|ref|YP_002923211.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465289|gb|ACQ67063.1| rRNA methylase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 247

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 12/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDK 103
           +  +YG H++ A L +   +  ++   +N     L  L  +        +     Q +D 
Sbjct: 2   SDIIYGFHSIKAFLEHHPERFLEIFILQNNDSYRLQSLVKELKSA-GLSILFTSRQYLDA 60

Query: 104 IVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             G   VHQG+  +            P L    ++  ++VLD + DPHN+GA LRSA A 
Sbjct: 61  QTG-GGVHQGIMAKVCSAHQYQENELPALLNSLDTPFVLVLDGITDPHNLGACLRSAEAS 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +A + K+ASGA E+IP IR++NL   L+ +  +    IG + ++K
Sbjct: 120 GVQIVILPRDRSAPLNATVKKAASGAAENIPVIRVTNLARTLRVLKEYHLLIIGTAGEAK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K + +      +AL++G+E KGLR  T+E    +  + M G + +LNVS A  V L+   
Sbjct: 180 KTVYEARMTGSMALVMGSEEKGLRRLTREHCDHLIRIPMLGRVSSLNVSVATGVCLFEAV 239

Query: 278 NHFA 281
               
Sbjct: 240 RQRN 243


>gi|91205880|ref|YP_538235.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157826761|ref|YP_001495825.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
 gi|91069424|gb|ABE05146.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157802065|gb|ABV78788.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
          Length = 241

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/244 (34%), Positives = 137/244 (56%), Gaps = 7/244 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      D +  L    P K V  
Sbjct: 2   QNKKLDSKNYYYIYGKHPVFSALNNPKRQIEDILCTQMIF---DANKKLISSKPYKIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +   HQG+A +  P+ S  ++ +  +N +  + +LD + DP NIGAI+RSA 
Sbjct: 59  DVLSKLL-ENQTHQGIAAKVKPIFSHNIEDINIKNPKCKIAILDQITDPQNIGAIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF+ D II     SP+E+  +AK+A G LE I  I+++NL   +  +   GF  IGL+ +
Sbjct: 118 AFNIDAIILPLDNSPNENGTIAKAACGTLELIKIIKVTNLNSCINYLKKHGFWVIGLTGE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +      ++ +DKIALI G+E KG+R   QE    +A + +   +++LNVSNAA++  + 
Sbjct: 178 ANDYFTDKLISDKIALIFGSEDKGMRRLVQENCDYLAKIPISDKVESLNVSNAASIIFHS 237

Query: 276 TQNH 279
             +H
Sbjct: 238 LWDH 241


>gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus
           DSM 2379]
          Length = 251

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 125/243 (51%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKI 104
              ++GV+ V  AL    R+IF L     A   RLD    L     V+ +    + + ++
Sbjct: 3   EELVFGVNPVREALR-GKREIFGLYVQSTATDHRLDKILELARERGVRVIRREREDLTRM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
            G  + HQG+AL+ AP     LD +  +         L+VLD + DPHN+GA++R+A   
Sbjct: 62  CGS-SHHQGMALKVAPFSYADLDDLIEAGDREDAAGFLLVLDGIQDPHNLGALIRTAACA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++  +  + + +    K+++GA+E I   +++N+  +L+K+   G+   GLS ++ 
Sbjct: 121 GASGVVIPRDRACAITPAAEKASAGAVETITVAQVTNIAQSLEKLKRSGYWVYGLSGEAD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L +   + KIAL++G EG+G+RP  ++   ++  + + G + +LN S A  +ALY   
Sbjct: 181 ASLYEVAFSGKIALVIGGEGEGIRPLVRKQCDALVSIPLYGGVGSLNASVAGGIALYEVA 240

Query: 278 NHF 280
              
Sbjct: 241 RCL 243


>gi|329769072|ref|ZP_08260494.1| RNA methyltransferase [Gemella sanguinis M325]
 gi|328839563|gb|EGF89139.1| RNA methyltransferase [Gemella sanguinis M325]
          Length = 271

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 139/269 (51%), Gaps = 18/269 (6%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +++N+  YK+++  N++ +   Q     P+   + G + +  A+ +  R+I ++L  +  
Sbjct: 1   MKKNNNYYKELRKKNKEQKAPVQNTELDPDKEVIAGRNAILEAIKSG-REINKILFQEGI 59

Query: 78  LA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--- 131
                +  +          + VP + +D    +   HQG+    AP     LD V N   
Sbjct: 60  EKGRLKSIFAIANEKKIVCQEVPKRKLDNTTTER--HQGVIAFVAPYNYFELDEVLNKLD 117

Query: 132 ---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              S  L++LDH+ DPHN+GAI+R+A A    GII  KR +   S    K+++GA+EH+P
Sbjct: 118 INKSTTLLILDHIEDPHNLGAIIRTAEASGVKGIIIPKRRAAVVSQTAVKASAGAIEHMP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            IR+S+LTDA++K+   GF   G +  +  +   +  K+  +A+++G EG+G+     + 
Sbjct: 178 VIRVSSLTDAIKKLKEKGFWIAGTTLAERSEEYTKIAKDVPLAIVIGNEGEGMSKVVTKE 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + HL M G I++LN S AA + +Y  
Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMYER 266


>gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 248

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 14/243 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIV 105
             ++G++ VS AL    R+++++ A +     RL+    L       ++ +  + +D++ 
Sbjct: 3   ELVFGINAVSEALK-GQRRVYKIYAQRERQDKRLEEILTLAREKQLKLQYLEKKKMDELC 61

Query: 106 GKEAVHQGLALETAPLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             E  HQG+  E        L  V             L++LD + DP N+GAI+R+A   
Sbjct: 62  --EGKHQGIIAEVERYPYADLGQVLEKLQAQKEKPPFLLLLDGIEDPQNLGAIIRTAECA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII     S   +  +++ ++GA+EH+  IR +NL + ++ +   GF  +G  + ++
Sbjct: 120 GVDGIIIPSHKSAEVNPTVSRVSAGAVEHMAIIRENNLVNTIKYLKQEGFWVLGADAKAR 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +           AL++G EG+G+R   +E    +  + M G + +LN S AAA+ +Y   
Sbjct: 180 QSYFNTSIPSPTALVIGGEGQGIRRLVRENCDILVRIPMFGQLNSLNASVAAALLIYEVL 239

Query: 278 NHF 280
              
Sbjct: 240 RQR 242


>gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311]
 gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
           CC9311]
          Length = 589

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 134/269 (49%), Gaps = 23/269 (8%)

Query: 31  KKMQS--FNQKSRHTSQPE------NLFLYGVHTVSAALNNPSRKIFQLLATKN-----A 77
           K++ S   + K R  S P       +  L+G H   AAL    R I ++  T        
Sbjct: 225 KRLSSPRLDDKPRGESSPHAAEAVADDLLWGRHATQAALE-AGRPIHRIWCTSELRSASK 283

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVR 130
             +L  DA       V+ V    + ++ G  AVHQG+ L+TA   +  L+       A+ 
Sbjct: 284 FLQLLKDAK-SSGVLVEEVTWARLGQLTG-GAVHQGIVLQTAAAETFDLEDLVKGCSALD 341

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + LL+ LD + DPHN+GAI+RSA A    G++  +R S   +  +AK A+GALEH+P  
Sbjct: 342 EAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVA 401

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R+ NL  +L+ + S G++ IGL+ +    LE+   +  + ++ G+EG+GL   T+     
Sbjct: 402 RVVNLNRSLETLKSSGYRVIGLAEEGDLTLEEVDLDGPLVIVTGSEGQGLSMLTRRHCDQ 461

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  + + G+  +LN S A A+ LY     
Sbjct: 462 LIRIPLRGVTPSLNASVATALCLYEVARR 490


>gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum
           lavamentivorans DS-1]
          Length = 288

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/234 (44%), Positives = 141/234 (60%), Gaps = 4/234 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPV--KTVPPQTIDKIVG 106
           +LYG H V AAL NP+R   +L+ T+NA   L    A LP   PV  + +  + I  ++ 
Sbjct: 53  YLYGFHAVLAALANPARLAERLVLTRNAETELARQGARLPADLPVRLEIMENEDIAALLP 112

Query: 107 KEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
             AVHQG+AL  +PL     ++A   +  ++VLD V DPHN GAILRSA  F    +ITT
Sbjct: 113 AGAVHQGIALRASPLPDLDVVEACEGTNRVVVLDQVTDPHNFGAILRSAAVFGAGALITT 172

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R SPS   VLAK+ASGALE +   RI+NL  A++++   GF+ +GL  + +  L     
Sbjct: 173 ERNSPSLGGVLAKAASGALELVRVARITNLVRAIEELKELGFEVVGLDGEGEASLPDLKL 232

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + ++AL+LGAEG GLR  T+E    +A L   G +K+LNVSNAAAVALY     
Sbjct: 233 SPRVALVLGAEGAGLRRLTREHCDLLARLPAAGGMKSLNVSNAAAVALYELFRR 286


>gi|229542223|ref|ZP_04431283.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
           36D1]
 gi|229326643|gb|EEN92318.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
           36D1]
          Length = 247

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDK 103
           +  ++ G + V  AL    R+I ++   + +     +   +        V+ VP + ID+
Sbjct: 2   DQEYIAGKNPVLEALR-AGREINKIWIAEGSQKGAMKQVIELARERKVTVQFVPKKKIDQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   +  HQG+    A                      +++LD + DPHN+G+ILR+A A
Sbjct: 61  VA--DGAHQGVLALVAAYRYAETGDMFKLAKERNEHPFILILDELEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR S + +A +AK+++GA+EHIP  R++NL+  +  +   G    G  +  
Sbjct: 119 VGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARVTNLSQTIAGLKQQGLWIAGTDASG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                Q   +  + L++G+EGKG+    +E    +  L M G + +LN S AA + +Y  
Sbjct: 179 TTDYRQMDADLPLCLVIGSEGKGMSRIVKEACDFLIRLPMAGHVTSLNASVAAGLLMYEV 238

Query: 277 QN 278
             
Sbjct: 239 YR 240


>gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
           331]
          Length = 270

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107
           +YG+H VS  L+   ++I +L   +N    RL           VK +      ++ +  +
Sbjct: 27  IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKGLGVKVILLSRTELNTLSNE 86

Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   +       L   L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 87  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264


>gi|134094504|ref|YP_001099579.1| tRNA (guanosine-2'-O-)-methyltransferase [Herminiimonas
           arsenicoxydans]
 gi|133738407|emb|CAL61452.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Herminiimonas arsenicoxydans]
          Length = 247

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKIVG 106
            ++G H V+A L + +  + ++    +    R+           V+ +      +  IVG
Sbjct: 5   MIFGFHAVTARLRHEASSVEEIYIDASRHDQRMKDLIRAAEAAKVRIIAADDARLSSIVG 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  +   L     L   LDA+    LL+VLD + DPHN+GA LR A       
Sbjct: 65  TRR-HQGVVAKAGELSLARNLDELLDAIDGPPLLLVLDGITDPHNLGACLRVADGAGAHA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A  AK ASGA + +PYI ++NL   L+++       IG + DS+K L 
Sbjct: 124 VIAPKDRAVGLNATAAKVASGAADTVPYITVTNLARTLRELKERDILLIGTTDDSEKGLY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +   ALI+G+EG+G+R  T+ET   +  + M G +++LNVS A+ V LY  +   
Sbjct: 184 EADFSGPAALIMGSEGEGMRRLTRETCDVLVSIPMFGSVESLNVSVASGVCLYEARRQR 242


>gi|302390940|ref|YP_003826760.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
           arabaticum DSM 5501]
 gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
           arabaticum DSM 5501]
          Length = 243

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 10/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEA 109
           + G + V  AL +  R+I ++L  +NA    +           +K V  + +D +    +
Sbjct: 4   IEGRNPVMEALKS-ERRIDEILIYQNAEGVNELLKKAKAEGIKLKRVAKEKLDNLADSYS 62

Query: 110 VHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            HQG+     P+   +LD +        +  L ++LD + DPHN G+ILR+A A    G+
Sbjct: 63  -HQGVIAFGEPIKYLSLDQLIDKAYNKTDDPLFILLDEIKDPHNFGSILRTADAVGAQGV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR S   ++ + K+++GA+EHIP  +++NL  A++++    F   G   +++    Q
Sbjct: 122 IIPKRRSVGLTSAVGKASAGAIEHIPVAQVTNLVRAMEELKENRFWIAGADMEAEGFCYQ 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + +++G+EG G+R   +E    +  L M G I +LN + A AV +Y       
Sbjct: 182 QDLTGPLGIVIGSEGAGMRRLVKERCDFLIKLPMKGRINSLNAAVAGAVLMYEALRQRN 240


>gi|71908582|ref|YP_286169.1| RNA methyltransferase TrmH, group 3 [Dechloromonas aromatica RCB]
 gi|71848203|gb|AAZ47699.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Dechloromonas aromatica
           RCB]
          Length = 243

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG H ++A L +    + ++L      +A AR            V     + +D +  
Sbjct: 5   LIYGFHAITAKLRHDPGAVKEILIDASRHDARARDLLGHAELQGINVVACDGKRLDGMA- 63

Query: 107 KEAVHQGLALETA-----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+            L   LD +     L+VLD + DP N+GA LR A A     
Sbjct: 64  PGARHQGVVARIEGGRKVAHLDDVLDTLEEPAFLLVLDGITDPRNLGACLRVADAAGVHA 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   + V AK+A GA E +PY+ ++NL   L+++       IG + +++  L 
Sbjct: 124 VIAPKDRAVGLTDVAAKTACGAAETVPYVMVTNLARTLRELQEREIWVIGTAGEAESDLY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   A +LGAEG+G+R  T+E    +  + M G +++LNVS AA V L+  +    
Sbjct: 184 AAEWPKATAWVLGAEGEGMRRLTRENCDQLVKIPMHGTVESLNVSVAAGVCLFEARRRLG 243


>gi|330720741|gb|EGG98965.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [gamma
           proteobacterium IMCC2047]
          Length = 244

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 12/244 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             ++G+H V A L   + ++ ++L  +   N   R            V  V    +++  
Sbjct: 2   EIVFGIHAVQALLQRNAGRVERVLIQQDKFNGRVRELMQLANKKKVRVDQVDRDELEQHA 61

Query: 106 GKEAVHQGLALETA---PLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSC 159
             +  HQG+         L    LD +       L++VLD V D HN+GA LRSA A   
Sbjct: 62  --DGNHQGVVAICKNQKSLNEADLDQLLEEVSQPLVLVLDGVTDTHNLGACLRSADAAGV 119

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKK 218
             ++  K  S   ++V++K ASGA E +P+++++NL   ++ M   G    G + D S +
Sbjct: 120 TAVVVPKDNSADLNSVVSKVASGAAETLPFVKVTNLARTMKAMQDRGLWITGTAVDESSR 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           PL +        +++G+EGKG+R  TQE    + ++ M G + +LNVS A  V L+    
Sbjct: 180 PLYEADLTGPRVIVMGSEGKGMRRLTQEHCDELVYIPMAGEVSSLNVSVATGVCLFEAVR 239

Query: 279 HFAK 282
              K
Sbjct: 240 QRVK 243


>gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81414895|sp|Q743W2|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479
 gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 309

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 130/270 (48%), Gaps = 13/270 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A LR NH   K+ QS  ++    ++     L G + V   L    P+  ++  L T+ A 
Sbjct: 41  AHLRPNHPAAKRAQSPPRRPAKRTEETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98

Query: 79  ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----- 131
            RL    +        +  VP   +D++ G   +HQG+AL+  P +    D +       
Sbjct: 99  ERLTESVSRAADSGISILEVPRADLDRMTGNH-LHQGIALQVPPYIYAHPDDLLEAAAGS 157

Query: 132 -SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  
Sbjct: 158 LPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  LQ     G + IGL +     L+    +D + +++G+EGKGL    ++    
Sbjct: 218 RATNLTRTLQDWADRGLRVIGLDAGGDTMLDDLDGSDPLVVVVGSEGKGLSRLVRQNCDE 277

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M G  ++LN S AA V L       
Sbjct: 278 VVSIPMAGSAESLNASVAAGVVLAEISRQR 307


>gi|83594035|ref|YP_427787.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
           11170]
 gi|83576949|gb|ABC23500.1| RNA methyltransferase TrmH, group 3 [Rhodospirillum rubrum ATCC
           11170]
          Length = 348

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 10/250 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           +   +   K         L+L+G H V AAL NP RK          LA       LP  
Sbjct: 98  RPEPAARGKRPGGRGDGGLWLFGRHAVEAALQNPERK------ALRLLALAGAAEGLPKG 151

Query: 91  FP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHN 146
            P V+    + I+ +V   AVHQGLAL+ APL  PT++ +       ++ +LD V+DPHN
Sbjct: 152 GPTVEPADREAIEAVVPPGAVHQGLALKVAPLSQPTVEEIARIPGPSVVAILDQVSDPHN 211

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGA+LRSA AF    ++   R+SP E+  LAKSASG LE +P +R  NL+ AL      G
Sbjct: 212 IGAVLRSAAAFGIRAVVVQDRHSPEETGTLAKSASGTLERVPLVRAINLSQALDTFKEHG 271

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   GL + ++  L +    ++  ++LG+EG GLR   ++    +  L M   +++LNVS
Sbjct: 272 FWCAGLDASAETTLAEAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLAMDSGVESLNVS 331

Query: 267 NAAAVALYIT 276
           NAAAV  Y  
Sbjct: 332 NAAAVTFYEL 341


>gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
 gi|24987283|pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
          Length = 253

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 10/240 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG+H V A L     +  ++   K    +       A       ++    Q +D+    
Sbjct: 15  IYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK-SD 73

Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            AVHQG+     P         P L A  +   L++LD V DPHN+GA LRSA A     
Sbjct: 74  GAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHA 133

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  S   +A   K A GA E +P IR++NL    + +       +G + ++   L 
Sbjct: 134 VIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTXRXLQEENIWIVGTAGEADHTLY 193

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q     ++AL+ GAEG+G R  T+E    +  +   G + +LNVS A  + L+      +
Sbjct: 194 QSKXTGRLALVXGAEGEGXRRLTREHCDELISIPXAGSVSSLNVSVATGICLFEAVRQRS 253


>gi|329117061|ref|ZP_08245778.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parauberis NCFD 2020]
 gi|326907466|gb|EGE54380.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           parauberis NCFD 2020]
          Length = 249

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 9/248 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K     +  N  +YGVH V  +L  N   K++     +                 +   P
Sbjct: 2   KDNQLIEENNDMVYGVHAVVESLTANTGNKLYIQDDLRGKNVDKIKALATEKKVSISWTP 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            +++ ++    AVHQG  L  A      LD +       ++ L+++LD + DPHN G+IL
Sbjct: 62  KKSLSEMTD-GAVHQGFVLRVAEYAYAELDEIISKADAEDNPLILILDGITDPHNFGSIL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   + V+AK+++GA++H+P  R++NL+  L K+   G+   G
Sbjct: 121 RTADATKVAGVIIPKHRAVGVTPVVAKTSTGAIQHMPIARVTNLSQTLDKLKEKGYWIFG 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D   P  +   + K+ALI+G+EGKG+    ++    M  + M G +++LN   AAAV
Sbjct: 181 TDMDG-TPSPKWNTSGKLALIIGSEGKGVSHNIKKQVDEMITIPMDGHVQSLNAGVAAAV 239

Query: 272 ALYITQNH 279
            +Y    +
Sbjct: 240 LMYEVYRN 247


>gi|298291417|ref|YP_003693356.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM
           506]
 gi|296927928|gb|ADH88737.1| RNA methyltransferase, TrmH family, group 3 [Starkeya novella DSM
           506]
          Length = 270

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/251 (41%), Positives = 148/251 (58%), Gaps = 9/251 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENL--------FLYGVHTVSAALNNPSRKIFQLLATKN 76
           R  R  +   +  ++ R                 LYG H+V+ AL NP RKI +LLAT+N
Sbjct: 4   RPRRPARPYHASQRQPRPRPAGRPFGAWPDDVAILYGWHSVAEALRNPRRKIRRLLATEN 63

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A  RL+ ++ +P     + V P  ID+++  +AVHQGL  E  PL + +L     S LL+
Sbjct: 64  AAKRLEEES-IPLKVKPEIVRPGEIDRLLDPDAVHQGLLAECDPLPALSLAKAAESDLLL 122

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD + DPHN+GAI+RSA A     I+TT R+SP+ + VLAKSASG LEH+P+  + NL 
Sbjct: 123 VLDQITDPHNVGAIVRSAAAMKVGAIVTTARHSPAATGVLAKSASGGLEHVPFCFVGNLA 182

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L+++   G Q +GL S+    L        +AL+LGAEGKGLR  T++T  ++A + +
Sbjct: 183 RTLEELKERGVQVVGLDSEGPADLADTAMRAPVALVLGAEGKGLRQLTRQTCDTLARIDL 242

Query: 257 PGIIKALNVSN 267
           PG I +LNVSN
Sbjct: 243 PGAIVSLNVSN 253


>gi|119502817|ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
 gi|119461163|gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
          Length = 247

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 16/246 (6%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLP--HPFPVKTVPPQTIDKI 104
           + ++YG H V A L    R I  L   T     R      L       V+ V    +D++
Sbjct: 2   SDWVYGFHAVEALLRREPRAIATLWLETNRRDKRAQTLLQLAADQGVAVERVSGAALDEV 61

Query: 105 VGKEAVHQGLALETAP-LLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAV 155
                 HQG+A++      +  +D          ++S LL++LD V DPHN+GA LR+A 
Sbjct: 62  AA--GRHQGIAVQVKSGATTEAIDEAGLMVLLQRQDSPLLLILDGVTDPHNLGACLRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  +  +   S V  K A GA + +P++R++NL   L ++ + G   IG S  
Sbjct: 120 AAGVTAVVVPQDGAAGLSPVARKVACGAADTVPFVRVTNLARTLGQLKAAGVWLIGTSDK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + L ++  +  +A+++GAEG G+R  T+E    +  L M G + +LNVS A  + L+ 
Sbjct: 180 ASRTLFEQDFSGPVAIVMGAEGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGICLFE 239

Query: 276 --TQNH 279
              Q H
Sbjct: 240 AVRQRH 245


>gi|307266360|ref|ZP_07547898.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918596|gb|EFN48832.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 247

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   + G + V  A+ +    I ++  +K A   +    NL       V T     + K
Sbjct: 2   EEQNVILGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+    A      +D +       +    L++LD + DPHN+GAI+RSA A
Sbjct: 61  LAGSQ-NHQGVVAVGAVYKYFEVDDLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   ++
Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRGLKERGLWIVGTDVNA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K  E+   +  +A+++G+EGKG+     +    +  + M G I +LN S AA++ +Y  
Sbjct: 180 GKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239


>gi|254230075|ref|ZP_04923473.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
 gi|262393043|ref|YP_003284897.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           Ex25]
 gi|151937409|gb|EDN56269.1| RNA methyltransferase, TrmH family, group 3 [Vibrio sp. Ex25]
 gi|262336637|gb|ACY50432.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
           Ex25]
          Length = 248

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P           + A   S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|241765241|ref|ZP_04763223.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
           2AN]
 gi|241365073|gb|EER59958.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax delafieldii
           2AN]
          Length = 248

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/244 (31%), Positives = 114/244 (46%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   D        +       I K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYYEATRRDARMRQFLDRAREAGARLIEADSVRIAKLAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A    P+     L   L+ +        LL+VLD V DPHN+GA LR A   
Sbjct: 66  SHG-HQGVAARVEPVAQVTSLDELLENLEAAGIEQPLLLVLDGVTDPHNLGACLRVADGA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ 
Sbjct: 125 GAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAP 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K + Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+ V LY   
Sbjct: 185 KTIYQVDLKGPVALVLGAEGDGMRQLTRKTCDELVSIPMKGAVESLNVSVASGVCLYEAL 244

Query: 278 NHFA 281
              +
Sbjct: 245 RQRS 248


>gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
 gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
          Length = 285

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 131/286 (45%), Gaps = 13/286 (4%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
            +  K F  +++   K     +  ++     +      + +   + G       L +  R
Sbjct: 2   TRDNKNFGKRNNQPNKQSFTKKPARQTVKPVEDRVEEQETDRDLVAGRLPAIEVLKS-ER 60

Query: 67  KIFQLLATKN-ALARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLS 123
            I ++   +  + ++++   NL     V+   VP   +D++V     HQG+ +  +    
Sbjct: 61  DINKIFLQEGLSGSKMEEIQNLAKKRSVQISFVPKSKLDQLVD-GMNHQGVVVAASAFQY 119

Query: 124 PTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            T+D +             ++LD V DPHN+G+I+R+A A    GII  KR +   +A +
Sbjct: 120 ATIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLTATV 179

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AK+++GA+EH+P  R++NL  A++++   G    G   +  +   Q      I L++G E
Sbjct: 180 AKASTGAIEHVPVARVTNLVQAIKELKERGLWLYGTDMEG-QDYRQWETTLPIGLVMGNE 238

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GKG+    +E    M  + M G +++LN S AA++ +Y       K
Sbjct: 239 GKGISRLVKEQMDGMVTIPMTGHVQSLNASVAASLLMYEVYRGRNK 284


>gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 456

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/280 (29%), Positives = 136/280 (48%), Gaps = 21/280 (7%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPE------NLFLYGVHTVSAALNNPSRKIFQL 71
           S   +  R  R  +  + F +K R  S         +  L+G H   AAL    R I ++
Sbjct: 122 SRSPRSDRQDRSDRPDRRFEEKPRGESSSHSADPVADDLLWGRHATQAALE-AGRPIHRI 180

Query: 72  LATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
             T          +L  DA       V+ V    + ++ G  AVHQG+AL+TA   +  L
Sbjct: 181 WCTSEMRSAPRFMQLLRDAK-SSGVLVEEVTWARLAQMTG-GAVHQGIALQTAAADTLDL 238

Query: 127 D-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                   A++ + LL+ LD + DPHN+GAI+RSA A    G++  +R S   +  +AK 
Sbjct: 239 ADLIEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKV 298

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A+GALEH+P  R+ NL  +L+ +   G++ +GL+ +  + LE+      + ++ G+EG+G
Sbjct: 299 AAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEADLEGPLVVVTGSEGQG 358

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L   T+     +  + + G+  +LN S A A+ LY     
Sbjct: 359 LSMLTRRHCDQLIRIPLRGVTPSLNASVATALCLYEVARR 398


>gi|322411058|gb|EFY01966.1| putative tRNA/rRNA methyltransferase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 248

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 124/240 (51%), Gaps = 9/240 (3%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ +L  N   K++     +                 +   P +T+ ++  
Sbjct: 10  NDIVYGVHAVTESLHANTGNKLYIQEDLRGKNVDNIKRLATEKKVSISWTPKKTLSEMT- 68

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      LD +       ++ L+++LD + DPHN+G+ILR+A A +  
Sbjct: 69  EGAVHQGFVLRVSAFAYTELDVILEKAEQEDNPLILILDGLTDPHNLGSILRTADATNVC 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V++K+++GA+EH+   R++NL+  L K+ + GF T G   +   P 
Sbjct: 129 GVIIPKHRAVGVTPVVSKTSTGAVEHVLIARVTNLSQTLDKLKAKGFWTFGTDMNG-TPS 187

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 188 HRWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNR 247


>gi|237734015|ref|ZP_04564496.1| 23S rRNA methyltransferase [Mollicutes bacterium D7]
 gi|229382841|gb|EEO32932.1| 23S rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 244

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 8/235 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG +T+  AL    + ++ +    NA      +       P K V      K +G   
Sbjct: 7   YIYGKNTILEALK-GDKSVYTVYVQNNAKDNGIIEQCKRKKIPFKIVDKSEFIKKLG-NV 64

Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E       ++D + N+       LL++LD + DPHN+GAILR+  A   DG+I
Sbjct: 65  SHQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 124

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +  +AK ++GA++H+   +++NLT  L+ +    F  +G   D  +   Q 
Sbjct: 125 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQDYRQV 184

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             N  + +++G+EG G+    +++      L M G + +LN S A AV LY   N
Sbjct: 185 DYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHVNSLNASVATAVILYQVYN 239


>gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
 gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
          Length = 244

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 125/239 (52%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +L+G++ V  AL    RK+  L        RL+            VK    + +DK+VG 
Sbjct: 4   YLFGLNAVFEALGQG-RKVVALYVEAQRNPRLEEIVAQATERHVAVKQCERRQLDKMVG- 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +  HQG+  +       +L  +     ++ +  ++LD + DPHN GA++RSA A  C G+
Sbjct: 62  DVRHQGVVAQVKAQDFVSLAQLLAQSSQSERFFLILDGITDPHNFGALIRSAAAAGCQGV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   + ++ K+A+G L ++   +++NL  A++++   G    GL+ +  + L +
Sbjct: 122 IFAKDRSCPVTGIVEKTAAGTLGYVQLCQVTNLGRAIEELKKAGVWVYGLAGEEGQSLFE 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
              +  IAL+ G+EG+G+RP  ++    +  + MPG +++LNVS A  +AL+   +NH 
Sbjct: 182 APLSAPIALVAGSEGRGIRPLIRKLCDGLIAIPMPGRVESLNVSVATGIALFEVVRNHL 240


>gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           sphaericus C3-41]
 gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO
           [Lysinibacillus sphaericus C3-41]
          Length = 250

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 13/245 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQT 100
           ++     + G + V  AL +  R + ++   +           D        V+ VP + 
Sbjct: 2   TEQNGEIIAGKNPVLEALRSG-RDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKK 60

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D++    A HQG+    A      L+ +       +     ++LD + DPHN+G+I+R+
Sbjct: 61  VDQLSS--ANHQGIVASVAAYKYAELEDLFAAAAKKQEDPFFLILDELEDPHNLGSIMRT 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  KR S S +AV+AKS++GA+EH+P +R++NL   + ++   G    G  
Sbjct: 119 ADAIGAHGIIIPKRRSVSLTAVVAKSSTGAIEHVPVVRVNNLAQTVDELKERGIWIAGTD 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +       +      +A+I+G+EGKG+    +E    + HL M G + +LN S AAA+ +
Sbjct: 179 AKGSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLM 238

Query: 274 YITQN 278
           Y    
Sbjct: 239 YEVYR 243


>gi|293604389|ref|ZP_06686796.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
           piechaudii ATCC 43553]
 gi|292817266|gb|EFF76340.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Achromobacter
           piechaudii ATCC 43553]
          Length = 245

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++    +   +      +        V  VP + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFIEQAEKAGRRVHPVPMERLDGL-S 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +   HQG+            +   LD +    LL++LD V DPHN+GA LR+A A     
Sbjct: 65  RGTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A + + A GA + +PY+ ++NL   ++ +   G   +G    +   + 
Sbjct: 125 VIAPRDRAVGLNATVQRVACGAADTVPYLMVTNLARTMRGLKDRGVWLVGTDDQATDSMH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +      +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY T    
Sbjct: 185 KIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|319654849|ref|ZP_08008924.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317393412|gb|EFV74175.1| TRNA/rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 247

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 11/240 (4%)

Query: 48  NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             F+ G + V  AL +     KIF    +++   +            V+ VP + ID + 
Sbjct: 3   QDFIIGKNPVIEALKSERDINKIFIAEGSQSGQMQQVIGLAKSAGVLVQFVPKKKIDGMA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E  HQG+  + A      +D +         +   ++LD + DPHN+G+I+R+A A  
Sbjct: 63  --EGNHQGVIAQVAAYQYAEIDDLFAAAEKKNEAAFFLLLDEIEDPHNLGSIMRTADAVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR +   +A +AK+++GA+E+IP +R++N+   + ++   G    G  +  K+
Sbjct: 121 AHGIIIPKRRAVGLTATVAKASTGAIEYIPVVRVTNMARTIDELKERGVWIAGTDAKGKQ 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              Q      + L++G+EGKG+    ++    + +L M G + +LN S AAA+ +Y    
Sbjct: 181 DFRQMDGTMPLGLVIGSEGKGMGRLIRDKCDFLINLPMAGHVTSLNASVAAALLMYEVYR 240


>gi|257084050|ref|ZP_05578411.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|256992080|gb|EEU79382.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
          Length = 285

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 116/281 (41%), Gaps = 12/281 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E  + F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120

Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+ +         +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G                 IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRSWNTQGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +G+     +    +  + M G +++LN   AA + +Y    
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280


>gi|228475266|ref|ZP_04059991.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           SK119]
 gi|228270731|gb|EEK12140.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           SK119]
          Length = 249

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 121/242 (50%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++   +    +   D           ++TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIVSGH-TINKIWIQEGIRKQQINDILKNAKAQKLIIQTVPKSKLDN 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D    SQ        +++LD + DPHN+G+I+R+A A
Sbjct: 61  LA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPHNLGSIIRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG++  KR S + +  +AK+++GA++H+P +R++NL+  + ++   G+   G  +D+
Sbjct: 119 SGVDGVVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDNGYWVAGAEADN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+    ++       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 YR 240


>gi|163732185|ref|ZP_02139631.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
           Och 149]
 gi|161394483|gb|EDQ18806.1| RNA methyltransferase, TrmH family, putative [Roseobacter litoralis
           Och 149]
          Length = 257

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 105/253 (41%), Positives = 149/253 (58%), Gaps = 7/253 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ + T   E ++L+G+H V  AL N +R+  QL+ T NA A+L  DA      
Sbjct: 5   KWVVRKEQDKKTENRETIWLFGLHAVRDALENAAREKLQLIVTLNAQAKLA-DAIETSGI 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148
             + V P+  +  +   +VHQG ALE  PL   +L+ V        +M+LD V DPHN+G
Sbjct: 64  APEVVDPRKFNAPLDPGSVHQGAALEVKPLNWGSLEDVCVGSEHPRVMLLDRVTDPHNVG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA  F    +I T+ +S  E+  LAKSASGALE  PY+R+ NL D ++ +   G+ 
Sbjct: 124 AILRSAEVFGASAVIGTRHHSAPETGALAKSASGALERQPYLRVRNLADTIRALQGMGYI 183

Query: 209 TIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  +++  LEQ I   ++  IAL+LGAEG GLR KT+ET  S+  +   G   +LNV
Sbjct: 184 VLGLDGEARDTLEQAIEGKRDRPIALVLGAEGPGLREKTKETVDSLVRIDAAGQFGSLNV 243

Query: 266 SNAAAVALYITQN 278
           SNAAA+ALY T+ 
Sbjct: 244 SNAAAIALYATRR 256


>gi|91227443|ref|ZP_01261807.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269964501|ref|ZP_06178742.1| RNA methyltransferase [Vibrio alginolyticus 40B]
 gi|91188593|gb|EAS74884.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269830839|gb|EEZ85057.1| RNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 247

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQG+     P           + A   S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-RGANHQGIIARVKPAKQLNENDIDDILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEKGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|94968032|ref|YP_590080.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550082|gb|ABF40006.1| RNA methyltransferase TrmH, group 3 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 261

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 118/242 (48%), Gaps = 12/242 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKI 104
             +YG+H VS AL +  R    +   K+ +     R+  DA       V+ +P   +D+ 
Sbjct: 2   DVIYGIHPVSEALKSRGRSFQYVAIAKDRMDPRVQRIVEDAR-ESGITVRFLPRDFLDR- 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                +HQG+   T+      LD +          ++VLD + DPHN+GA++RSA     
Sbjct: 60  TANTNMHQGVIAVTSKKEYLDLDDIIEKKRGEHAFVVVLDGIEDPHNLGALIRSADGAGV 119

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKK 218
           DG++  +R +   +    K+++GA E++P  R++N+  +++ +   +   T+GL     +
Sbjct: 120 DGVVIPERRAVGVTGTAMKASAGAAEYVPIARVTNIARSIEDLKDKYNVWTVGLDERGTQ 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++   N  +AL+LGAEGKGL    ++    +  + M G + +LNVS A  + +Y    
Sbjct: 180 NYDEIDYNMSLALVLGAEGKGLHDLVRKKCDLLVKIPMAGEVSSLNVSVAGGIVMYEVSR 239

Query: 279 HF 280
             
Sbjct: 240 QR 241


>gi|314937163|ref|ZP_07844510.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655782|gb|EFS19527.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus hominis
           subsp. hominis C80]
          Length = 249

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 121/242 (50%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++   +    +   D           ++TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIVSGH-TINKIWIQEGIRKQQINDILKNAKAQKLIIQTVPKSKLDN 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D    SQ        +++LD + DPHN+G+I+R+A A
Sbjct: 61  LA--NAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPHNLGSIIRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGI+  KR S + +  +AK+++GA++H+P +R++NL+  + ++   G+   G  +D+
Sbjct: 119 SGVDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDNGYWVAGAEADN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+    ++       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 YR 240


>gi|295399475|ref|ZP_06809457.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
 gi|294978941|gb|EFG54537.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
          Length = 256

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/268 (24%), Positives = 120/268 (44%), Gaps = 19/268 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S+K+          + +KK+    ++ +         + G H V  AL +    I 
Sbjct: 2   KRIESVKNPQV-------KQWKKLLMKKERDK----TGLFLIEGFHLVEEALKSNI-SII 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL+  +N      WD +     PV  V    +  I   E   QG+A      L   +D  
Sbjct: 50  QLIVKENKAIPATWDIS---GIPVAIVTEDVMKAISDTE-TPQGIAAVCEQFLYGDIDWT 105

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +  ++++D V DP NIG ++R+A A   D +I  K  +   +  + ++  G+L H+P 
Sbjct: 106 RAN--VLLIDAVQDPGNIGTMIRTADAAGIDAVILGKGCADLYNPKVIRATQGSLFHLPI 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           IR  NL + ++K+        G S ++ +           AL++G EG G+  +  +  T
Sbjct: 164 IR-GNLREWIEKLQEQNVPIYGTSLENGEDYRCINPPRPFALLVGNEGSGVHKELLQMTT 222

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AA + LY  +
Sbjct: 223 KNLYIPIYGQAESLNVAVAAGILLYHLR 250


>gi|67924215|ref|ZP_00517655.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
 gi|67853934|gb|EAM49253.1| RNA methyltransferase TrmH, group 3 [Crocosphaera watsonii WH 8501]
          Length = 292

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/280 (29%), Positives = 135/280 (48%), Gaps = 26/280 (9%)

Query: 24  RRNHRDYKKMQSFNQKS-----------RHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
           R + R  KK +   +KS             T Q ++  +YG H+V AAL +  R++ ++ 
Sbjct: 8   RSDRRSSKKPRFSGKKSVVISSPQPRANTQTEQSDDDLIYGRHSVLAALESD-RQLNRIW 66

Query: 73  ATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            T N L           A+      +  V  Q + +I    A HQG+A + AP     LD
Sbjct: 67  IT-NRLHYDPRFHNLIQASKAKGAVIDEVSVQRLSQIT-NGANHQGVAAQVAPYNYHDLD 124

Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +        +  ++++ D ++DPHN+GAI+R+A A  C G+I  +R +   ++ ++K A
Sbjct: 125 GLIAQAKANSDEPVIVIADSISDPHNLGAIIRTAEALGCQGMIIPQRRAAGVTSTVSKVA 184

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +GALE  P  R+ NL+ AL+ + + GF   G  S+  K L+       I L++G+EG GL
Sbjct: 185 AGALESFPVARVVNLSRALETLKAEGFWIYGTVSEGGKRLQDFNFRGAIGLVIGSEGSGL 244

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              TQ     +  + + G   +LN S AAA+ LY      
Sbjct: 245 SLLTQRCCDELVSIPLGGKTPSLNASVAAAINLYEIYRQR 284


>gi|241888871|ref|ZP_04776177.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
           ATCC 10379]
 gi|241864547|gb|EER68923.1| RNA methyltransferase, TrmH family, group 3 [Gemella haemolysans
           ATCC 10379]
          Length = 271

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 136/269 (50%), Gaps = 18/269 (6%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQP-----ENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +++N++ YK+++  N++ +   Q      +   + G + +  A+ +  R+I ++L  +  
Sbjct: 1   MKKNNKHYKELRLKNKEQKPQVQTPEVDLDKEVIAGRNAILEAIKSG-REINKILFQEGI 59

Query: 78  LA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132
                +  +          + VP + +D        HQG+    AP     LD V N+  
Sbjct: 60  EKGRLKSIFAIANEKKIICQEVPKRKLDN--STTERHQGVIAYVAPYSYFELDEVVNNLE 117

Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++LDH+ DPHN+GAI+R+A A     II  KR +   S    K+++GA+EH+P
Sbjct: 118 INKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            IR+SNLTDA++K+   GF   G +  +  +   +  K+  +A+++G EG+G+       
Sbjct: 178 VIRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNE 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + HL M G I++LN S AA + +Y  
Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMYER 266


>gi|116629012|ref|YP_814184.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853166|ref|ZP_04643553.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           202-4]
 gi|311111192|ref|ZP_07712589.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           MV-22]
 gi|116094594|gb|ABJ59746.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238834220|gb|EEQ26470.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           202-4]
 gi|311066346|gb|EFQ46686.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           MV-22]
          Length = 251

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 13/238 (5%)

Query: 48  NLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           + F+YG H     L     N   K+F     +   A   +         V+  P   +D+
Sbjct: 6   DEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQ 65

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +V     HQGL L  AP     LD + +          +++LD + DPHN+G+ILR+  A
Sbjct: 66  MV-NHENHQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  KR +   ++V+AK+++GA++++P  R++NL    + +   G+   G + + 
Sbjct: 125 TGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +   N K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 185 E-DYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|310644224|ref|YP_003948983.1| RNA methyltransferase, trmh family, group 3 [Paenibacillus polymyxa
           SC2]
 gi|309249175|gb|ADO58742.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus polymyxa
           SC2]
          Length = 248

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 13/243 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDK 103
           E  ++ G H+V+ AL +  R I ++    NA   L              V  V  + +D+
Sbjct: 2   EEEWIAGKHSVTEALRSG-RTINKIWIADNAQKHLTLPITAEAKKAGIIVLQVDKRKLDQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +V     HQG+  + AP     ++ +            L++LD + DPHN+G+ILR+A  
Sbjct: 61  MV-PGIQHQGVVAQAAPFAYAEVEDLLASARAKGEEPFLILLDEIEDPHNLGSILRTADC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  KR S + +  ++K+++GA+E++P  R+SNL   + ++   G   +G    +
Sbjct: 120 TGAHGIIVPKRRSAAVTVTVSKTSAGAVEYVPVARVSNLGQTIDRLKEEGVWVVGTDVTA 179

Query: 217 KKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             P+    +    +A+++G E KG+    +E    +  L M G I +LN S AA V +Y 
Sbjct: 180 TDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VLR 242


>gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
           16795]
 gi|164604519|gb|EDQ97984.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 111/242 (45%), Gaps = 13/242 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + +  AL +  R I +L+ +   K    +            ++ V    +D+I   
Sbjct: 8   IEGRNPIIEALRSD-RPIDKLMISNTSKEGSIKKIIGMAKEKNVVIQYVDKHKLDEISTS 66

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            + HQG+    +      L+ +             ++LD + DPHN+G I+R+A A    
Sbjct: 67  HS-HQGVIAVVSDYKYYELEDLLAIARERGEDPFFIILDEITDPHNLGTIIRTADAVGAH 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  KR S   ++V+AK+++GA+E++P  +++N+ + ++++   G        D     
Sbjct: 126 GVIIPKRRSVHITSVVAKASAGAVEYVPVCKVTNIANTIKQLKKEGLWIAAADMDGGVFY 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           EQ      +AL++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 186 EQ-DLTGPLALVIGSEGFGVSRLVKQNCDFVVKMPMIGNVSSLNASVAGGILLYEIFRQR 244

Query: 281 AK 282
            K
Sbjct: 245 MK 246


>gi|160871681|ref|ZP_02061813.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
 gi|159120480|gb|EDP45818.1| RNA methyltransferase, TrmH family, group 3 [Rickettsiella grylli]
          Length = 253

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 121/252 (48%), Gaps = 15/252 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQ 99
            +QPE  F++G HT++A L +  +KI  L   ++    R+    NL   H  P+ T+   
Sbjct: 2   RNQPEKEFIFGFHTITALLKSAPQKIDTLYCREDRQDKRVQSIRNLAKLHGIPIGTLSKV 61

Query: 100 TIDKIVGKEAVHQGLALETAP-----------LLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
             ++I    AVHQG+  +               L   L    N   L+VLD V DPHN+G
Sbjct: 62  QCNEIA-PNAVHQGVFAKIKKTSRLNEQDLMIFLHHRLHNNLNPPFLLVLDGVQDPHNLG 120

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A LRSA A   D +I  +  + +++ ++ K+A+GA E      ++NL   L+++   G  
Sbjct: 121 ACLRSANAAGVDAVIIPQDRAVNKTPIVQKTAAGAAEVTSLFTVTNLATCLERLKKCGIW 180

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             GL     + +        +AL+LGAEGKGLR  T+     +  + M G + +LNVS A
Sbjct: 181 CYGLDQSGTRLIYDAPLTGPLALVLGAEGKGLRRLTKVCCDDLVAIPMVGTVGSLNVSVA 240

Query: 269 AAVALYITQNHF 280
           A V L+      
Sbjct: 241 AGVGLFEVVRQR 252


>gi|88798926|ref|ZP_01114508.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
 gi|88778406|gb|EAR09599.1| hypothetical protein MED297_12747 [Reinekea sp. MED297]
          Length = 252

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 14/248 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDK 103
           E+L++YG+H V +AL+N   ++ ++L  K    AR+    +      V+   V     D+
Sbjct: 3   ESLWIYGLHAVFSALDNHPERVKEVLLLKGRDDARMKKLLDQVTEVGVRYRLVSRDDFDR 62

Query: 104 IVGKEAV----HQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + K+ +    HQG+   T          L   LD +    LL+VLD V DPHNIGA LR
Sbjct: 63  TLHKQQLKDIRHQGVLALTTAAPVLKENDLEALLDNLEEPPLLLVLDGVTDPHNIGACLR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  A    G+I  K  S + +A   K ASGA + +P+  ++NL   L+++   G    G 
Sbjct: 123 TCDAAGAHGLIVPKDKSATLTATAVKIASGATDTVPFFAVTNLARTLEELKQRGIWVYGT 182

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++   + Q      IAL++GAEGKGLR  T+E    + H+ M G + +LNVS AA V 
Sbjct: 183 AGEASSEIYQNRLQGPIALVMGAEGKGLRRLTREVCDELIHIPMAGDVSSLNVSVAAGVC 242

Query: 273 LYITQNHF 280
           L+      
Sbjct: 243 LFEVVRQR 250


>gi|229547084|ref|ZP_04435809.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX1322]
 gi|255971593|ref|ZP_05422179.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|255974565|ref|ZP_05425151.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256618482|ref|ZP_05475328.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256761897|ref|ZP_05502477.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256855025|ref|ZP_05560386.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256956969|ref|ZP_05561140.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256960769|ref|ZP_05564940.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256964027|ref|ZP_05568198.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|257078646|ref|ZP_05573007.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|257088532|ref|ZP_05582893.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|257421386|ref|ZP_05598376.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|293382262|ref|ZP_06628202.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           R712]
 gi|293386689|ref|ZP_06631262.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           S613]
 gi|294780005|ref|ZP_06745384.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           PC1.1]
 gi|300862121|ref|ZP_07108201.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268964|ref|ZP_07550328.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4248]
 gi|307276292|ref|ZP_07557419.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2134]
 gi|307284105|ref|ZP_07564275.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0860]
 gi|307287135|ref|ZP_07567206.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0109]
 gi|307296637|ref|ZP_07576457.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0411]
 gi|312901249|ref|ZP_07760532.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0470]
 gi|312903156|ref|ZP_07762337.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0635]
 gi|312908760|ref|ZP_07767699.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 512]
 gi|312952481|ref|ZP_07771349.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0102]
 gi|312979220|ref|ZP_07790924.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 516]
 gi|229307813|gb|EEN73800.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX1322]
 gi|255962611|gb|EET95087.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|255967437|gb|EET98059.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256598009|gb|EEU17185.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256683148|gb|EEU22843.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256709538|gb|EEU24585.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256947465|gb|EEU64097.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256951265|gb|EEU67897.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256954523|gb|EEU71155.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|256986676|gb|EEU73978.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|256997344|gb|EEU83864.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|257163210|gb|EEU93170.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|291080376|gb|EFE17740.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           R712]
 gi|291083858|gb|EFE20821.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           S613]
 gi|294452899|gb|EFG21322.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           PC1.1]
 gi|295112380|emb|CBL31017.1| rRNA methylase, putative, group 3 [Enterococcus sp. 7L76]
 gi|300848646|gb|EFK76403.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TUSoD Ef11]
 gi|306495973|gb|EFM65561.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0411]
 gi|306501733|gb|EFM71024.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0109]
 gi|306503476|gb|EFM72725.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0860]
 gi|306507035|gb|EFM76178.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2134]
 gi|306514772|gb|EFM83323.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4248]
 gi|310625198|gb|EFQ08481.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 512]
 gi|310629577|gb|EFQ12860.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0102]
 gi|310633547|gb|EFQ16830.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0635]
 gi|311287985|gb|EFQ66541.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           DAPTO 516]
 gi|311291626|gb|EFQ70182.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0470]
 gi|315029624|gb|EFT41556.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4000]
 gi|315033510|gb|EFT45442.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0017]
 gi|315036333|gb|EFT48265.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0027]
 gi|315143637|gb|EFT87653.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2141]
 gi|315149010|gb|EFT93026.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX4244]
 gi|315151336|gb|EFT95352.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0012]
 gi|315153505|gb|EFT97521.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0031]
 gi|315155076|gb|EFT99092.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0043]
 gi|315158519|gb|EFU02536.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0312]
 gi|315163380|gb|EFU07397.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0645]
 gi|315165681|gb|EFU09698.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1302]
 gi|315168267|gb|EFU12284.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1341]
 gi|315171292|gb|EFU15309.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1342]
 gi|315174137|gb|EFU18154.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1346]
 gi|315578629|gb|EFU90820.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0630]
 gi|323479284|gb|ADX78723.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Enterococcus faecalis 62]
 gi|327533899|gb|AEA92733.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329576211|gb|EGG57729.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX1467]
          Length = 285

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 12/281 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E  + F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120

Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+ +         +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G          +      IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +G+     +    +  + M G +++LN   AA + +Y    
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280


>gi|152973939|ref|YP_001373456.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022691|gb|ABS20461.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cytotoxicus
           NVH 391-98]
          Length = 247

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWVAEGAAKGQIQIVVALAKENKILLQYAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+ +             ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAAKRNEEPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR S   +A +AK+++GA+E+IP +R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRSVGLTASVAKASTGAIEYIPVVRVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   N  I L++G+EGKG+     +    + HL M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGQKCDFLVHLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|293375373|ref|ZP_06621654.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
           PC909]
 gi|325844481|ref|ZP_08168208.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
 gi|292645926|gb|EFF63955.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sanguinis
           PC909]
 gi|325489155|gb|EGC91539.1| RNA methyltransferase, TrmH family, group 3 [Turicibacter sp. HGF1]
          Length = 276

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 120/254 (47%), Gaps = 16/254 (6%)

Query: 40  SRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPHPFPVKT 95
           SR  ++ E+    +YG +TV+  L +  RK+F+++   T     R           P K 
Sbjct: 18  SRRENKKESKYEVIYGKNTVNEVLES-KRKVFEVIVADTVAKAERGLMATIEKKQIPCKV 76

Query: 96  VPPQTIDKIV----GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
           +P Q  +++          HQG+     P     L  +            +++LD + DP
Sbjct: 77  LPRQKFEQLAKDKYDARGNHQGVLALVEPYAYMPLPDLIAKATQKEEPAFIIILDGLEDP 136

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAILR+A A   DGI+  K  S   ++ +AK ++GA+EHIP   ++NLT A+ ++  
Sbjct: 137 HNLGAILRTADAAGVDGIVIRKDRSVGLTSTVAKLSTGAIEHIPVACVANLTVAINQLKE 196

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G  +   +          + L++G+EGKG+    +E      +L M G + +LN
Sbjct: 197 AGLWIAGTDASEAQDYRTLDATLPLGLVIGSEGKGMSRLVREACDFKVYLPMRGHVTSLN 256

Query: 265 VSNAAAVALYITQN 278
            S AAA+ +Y   N
Sbjct: 257 ASVAAALLMYEIYN 270


>gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 247

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 11/240 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   + G + V  A+ +    I ++  +K A   +    NL       V T     + K
Sbjct: 2   EEQNVILGRNPVIEAIKSGKE-IEKIYISKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+    A      +D +       +    L++LD + DPHN+GAI+RSA A
Sbjct: 61  LAGSQ-NHQGVVAVGAVYKYFDVDNLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   GII  KR +   +A + K+++GA+EH+   ++SN+ + ++ +   G   +G   ++
Sbjct: 120 FGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRGLKERGLWIVGTDVNA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K  E+   +  +A+++G+EGKG+     +    +  + M G I +LN S AA++ +Y  
Sbjct: 180 GKSFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVKIPMKGKINSLNASVAASILIYQV 239


>gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
           E681]
          Length = 248

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 13/243 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDK 103
           E  ++ G H+V+ AL +  R I ++    NA   L              V  V  + +D+
Sbjct: 2   EEEWIAGKHSVTEALRSG-RTINKIWIADNAQKHLTLPITAEAKKAGIIVLQVDKRKLDQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +V     HQG+  + AP     ++ +            L++LD + DPHN+G+ILR+A  
Sbjct: 61  MV-PGIQHQGVVAQAAPFAYVEVEELLATARDKGEEPFLILLDEIEDPHNLGSILRTADC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR S + +  ++K+++GA+E++P  R++NL   + ++   G   +G    +
Sbjct: 120 TGAHGVIVPKRRSAAVTVTVSKTSAGAVEYVPVARVNNLGQTIDRLKEEGVWVVGTDVTA 179

Query: 217 KKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             P+    +    +A+++G E KG+    +E    +  L M G I +LN S AA V +Y 
Sbjct: 180 TDPVFGNGVFTGPVAIVIGNENKGMGRLIREKCDVLVKLPMAGQINSLNASVAAGVVMYE 239

Query: 276 TQN 278
              
Sbjct: 240 VLR 242


>gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 245

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 115/239 (48%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V  AL    R I ++L + + +     D           V+  P + +++   
Sbjct: 4   YIVGRNAVKEALK-AGRSIQRILVSDDKIKTGLSDIVGLAKSKGIEVRPTPVKQMNR-YE 61

Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+      +    L     ++   + LL++ D V DPHN+GAI+R+A       
Sbjct: 62  TDVPHQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  KR++   +A +AK+++GA+E IP +++ N+T  ++++   GF  +G   +  + L 
Sbjct: 122 VLIPKRHNAPINATVAKTSAGAVEQIPLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +        L++G EGKG+    +E    +  + M G + +LN S AAA+ +Y      
Sbjct: 182 EADLTIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQR 240


>gi|256852091|ref|ZP_05557478.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661339|ref|ZP_05862252.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|282934883|ref|ZP_06340115.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|297205034|ref|ZP_06922430.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256615503|gb|EEU20693.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260547794|gb|EEX23771.1| tRNA-rRNA methyltransferase [Lactobacillus jensenii 115-3-CHN]
 gi|281301064|gb|EFA93376.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus jensenii
           208-1]
 gi|297149612|gb|EFH29909.1| RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 251

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 12/242 (4%)

Query: 47  ENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTID 102
           +  F++G H     L N  + KI ++              +         V+ VP   +D
Sbjct: 5   KGDFVFGRHAGIDFLKNESADKINKVFLQNGVQVEFANQVYGLAKKKHLIVQEVPKNKLD 64

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+V  +A HQGL L  +      LD +      + +  L++LD + DPHN+G+ILRSA A
Sbjct: 65  KLV-PDANHQGLVLAISSFEYADLDKLVKKIADKENPFLLMLDSIEDPHNLGSILRSADA 123

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGII  KR +   ++V+AK+++GA++H+P  R++NL    +++   G+   G + + 
Sbjct: 124 TGVDGIIIPKRRASGLTSVVAKTSTGAIDHVPVCRVNNLVQTTKELKKAGYWFFGTAMEG 183

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +         K  L++G EGKG+ P   +       + M G +++LN S A  V LY  
Sbjct: 184 -QDYRYWDAKGKCVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLYQM 242

Query: 277 QN 278
            N
Sbjct: 243 LN 244


>gi|121594611|ref|YP_986507.1| RNA methyltransferase [Acidovorax sp. JS42]
 gi|120606691|gb|ABM42431.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax sp. JS42]
          Length = 248

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       + K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYYEPTRRDARMRQFLERAREAGTRLIEADGLRLAKLAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A     +     L   LD +      + LL+VLD V DPHN+GA LR A   
Sbjct: 66  SHG-HQGVAARVEAVAQVRTLDELLDELEARGVKNPLLLVLDGVTDPHNLGACLRVADGA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ 
Sbjct: 125 GAHAVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDAD 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY   
Sbjct: 185 KTLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEAL 244

Query: 278 NHFA 281
              A
Sbjct: 245 RQRA 248


>gi|312796222|ref|YP_004029144.1| 23S rRNA Gm2251 methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312167997|emb|CBW75000.1| 23S rRNA Gm2251 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 253

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + S  I ++L       R   D   A       +       +  + G
Sbjct: 11  VLYGFHAVTARLRHDSSSIEEVLYDATRRDRRMQDFLQAAQSSGVRLIAADDARLHGLAG 70

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+      L     L+  LDA+    LL+VLD V DPHN+GA LR A A     
Sbjct: 71  THR-HQGVVARATDLPLAQNLAELLDALPGPALLLVLDGVTDPHNLGACLRVADAAGAHA 129

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   ++  AK ASGA E +PYI ++NL   L+++   G   IG + D+++ L 
Sbjct: 130 VIAPRDRAVGLNSTAAKVASGAAETVPYITVTNLARTLRELKDAGVWVIGTAGDAQRSLY 189

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T+ET   + H+ M G + +LNVS A+ + L+      
Sbjct: 190 DIALDGPVALVMGAEGEGMRRLTRETCDDLMHIPMMGSVGSLNVSVASGICLFEAVRQR 248


>gi|258509319|ref|YP_003172070.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257149246|emb|CAR88219.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           rhamnosus GG]
 gi|259650600|dbj|BAI42762.1| rRNA methylase [Lactobacillus rhamnosus GG]
          Length = 260

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           + F++G H V AAL    +  I +L      K+   +            V T P Q +D 
Sbjct: 15  DEFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD- 73

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++     HQG+ L   P    TLD +             ++LD++ DPHN+G+ILR+A A
Sbjct: 74  LMSDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADA 133

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G + D 
Sbjct: 134 SGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDG 193

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   Q       AL++G EGKG+ P   +   +   + M G +++LN S AA + +Y  
Sbjct: 194 -QDYRQWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMAGHVQSLNASVAAGILMYQA 252


>gi|90408972|ref|ZP_01217104.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
           CNPT3]
 gi|90309920|gb|EAS38073.1| RNA methyltransferase, TrmH family, group 3 [Psychromonas sp.
           CNPT3]
          Length = 246

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDK 103
           ++  +YG+H V A L     +I ++   K    +   D           V+ +  +++D+
Sbjct: 3   KSEIIYGMHAVDALLEREPERIIEIYTLKGRDDQRITDITEKAKHWGISVQEMLRKSLDE 62

Query: 104 IVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
               E  HQG+              L   L+ +  +  L++LD V DPHN+GA LRSA A
Sbjct: 63  KAQCEQ-HQGVLARIKIAKVLNDNDLESLLENLTEAPFLLILDGVTDPHNLGACLRSADA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +I  K  S S + V+ K A GA E +  I+++NL   ++ +   G    G + ++
Sbjct: 122 AGVHAVIIPKDNSASLTPVVRKVACGAAESVALIQVTNLARCMRSLQDKGIWIYGTAGEA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +     +  IA+ +GAE KGLR  T+E   ++  L M G + +LNVS A  + L+  
Sbjct: 182 TGSVYDCQFSGGIAIAMGAEDKGLRRLTREHCDALIKLPMAGSVSSLNVSVATGICLFEV 241

Query: 277 QNHFA 281
               +
Sbjct: 242 VRQRS 246


>gi|258541781|ref|YP_003187214.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632859|dbj|BAH98834.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256635916|dbj|BAI01885.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256638971|dbj|BAI04933.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642025|dbj|BAI07980.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645080|dbj|BAI11028.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648135|dbj|BAI14076.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651188|dbj|BAI17122.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654179|dbj|BAI20106.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 280

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 146/258 (56%), Gaps = 3/258 (1%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R  R  +   +  ++   ++     +L+G H V+AALNNP R   +LL T+     L+  
Sbjct: 8   RPVRRPRVSSAGGREGAPSAPAGTCWLFGTHAVAAALNNPRRVYERLLVTEENHPALEEA 67

Query: 85  ANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHV 141
                   V  + V  Q +D ++G +AVHQG+AL    L    LD A+     ++VLD V
Sbjct: 68  TRSGRGVRVAPELVQRQRLDDLLGPDAVHQGVALLARVLPPMPLDEALERPGPVLVLDQV 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP NIGAILRSA AF    ++   R +P E+AVLAK+ASGALE +P +R  NL+ A+++
Sbjct: 128 TDPRNIGAILRSAAAFGAACLVVQDRNAPEETAVLAKAASGALETVPMVREVNLSRAIEQ 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G  T+GL +             ++AL+LGAEGKGLR  T+E+   +A L+MPG ++
Sbjct: 188 LQKSGCWTVGLDAGGTTLDGASFDGRRVALVLGAEGKGLRRLTRESCDEIAGLYMPGEME 247

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNVS AAAV LY     
Sbjct: 248 SLNVSVAAAVGLYELVRR 265


>gi|85716737|ref|ZP_01047705.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
 gi|85696455|gb|EAQ34345.1| RNA methyltransferase TrmH, group 3 [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 113/232 (48%), Positives = 151/232 (65%), Gaps = 1/232 (0%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            LYG HTV+AAL NP R I +LL T+NA  RL  + N+      + V P TID+ +G +A
Sbjct: 1   MLYGWHTVTAALANPRRHIRKLLLTENAALRLKHE-NINTRITPEIVRPSTIDQRLGPDA 59

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           VHQGL  E  PL SP +  +    +++VLD + DPHN+GAI+RSA AFS   I+TT R+S
Sbjct: 60  VHQGLLAEADPLPSPDIGTLTQEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIVTTARHS 119

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           P  + VLAKSASGALE +P +++ NL  AL  ++  G+ T+GL S   + L        +
Sbjct: 120 PEATGVLAKSASGALEVVPLVQVQNLARALTGLNDRGYMTVGLDSTGGENLAAVQLRQPL 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           AL+LGAEGKGLR  T++T + +A L MPG IK+LNVSNAA +ALYI  +   
Sbjct: 180 ALVLGAEGKGLRQLTRDTCSLVARLDMPGHIKSLNVSNAAVLALYIGASRLG 231


>gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus sp. 18P13]
          Length = 249

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 113/249 (45%), Gaps = 13/249 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQ 99
            T + +   + G + V  AL      +  +    T  +L R+   A       VK V  Q
Sbjct: 2   QTQEKDEALIIGRNPVLEALK-AEEPLDTIYMNGTGGSLGRICTMAK-SRGIVVKNVTEQ 59

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            + ++    A HQG+    A     TL+ +         +  L+V D + DPHN+GAI+R
Sbjct: 60  KLSQMA-NGAAHQGVIATGACASYVTLEDLLDISRKKGTAPFLIVCDEIEDPHNLGAIIR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A     DG+I  KR S S +A + K+++GA   +P  R++NL  AL  +   G    G 
Sbjct: 119 TAETAGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVANLAAALDTLKEAGVWIYGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +      ++      +AL++G+EG G+    +E    +  L M G I +LN S AA + 
Sbjct: 179 DASGDA-YDKVDLTGPVALVIGSEGFGMGRLVREKCDFLLRLPMCGRITSLNASVAAGIF 237

Query: 273 LYITQNHFA 281
           +Y T    A
Sbjct: 238 MYETLRQRA 246


>gi|113475949|ref|YP_722010.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110166997|gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium
           erythraeum IMS101]
          Length = 288

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 132/282 (46%), Gaps = 19/282 (6%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHT-----SQPENLFLYGVHTVSAALNNPSRKI 68
           S K+  +    +  ++ K++Q  + +S+        + +   +YG HTV AAL +  R +
Sbjct: 2   STKNYKFNSQEKPQKN-KQIQLKDGRSKKYYSPTVKEEDEDLIYGRHTVQAALKS-ERYL 59

Query: 69  FQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            ++        +    +  +        +  V  + +D+I  +   HQG+  +  P    
Sbjct: 60  NRIWIISSLRYDPRFHILLNEAKTKGTIIDEVDDRRLDQIT-RRKHHQGIVAQICPYEYK 118

Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            L  +        +  +L+V D +NDPHN+GAI+R+  A    G++  +R +   ++ + 
Sbjct: 119 ELHELISQAKSKTDRSVLLVADGINDPHNLGAIIRTGEALGIQGLVIPQRRAVGITSTVT 178

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K A+GALE+ P  R+ NL  AL+++   GF   G  +   +P+        I L++G+EG
Sbjct: 179 KVAAGALENFPVARVINLNSALEELKKEGFWIYGTVAKDGEPIHTVKFTGAIVLVVGSEG 238

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +GL    Q+   ++  + M G   +LNVS A  +A+Y     
Sbjct: 239 EGLSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQ 280


>gi|302382701|ref|YP_003818524.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193329|gb|ADL00901.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 304

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 90/256 (35%), Positives = 152/256 (59%), Gaps = 4/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK-IFQLLATKNALARLDWD 84
            +   +   S   +        + FL+G H V AAL NP+RK + +LLAT++  A ++ +
Sbjct: 47  PNPPARAFSSAAPRPSRGKVDADGFLWGRHPVLAALANPARKGMGRLLATEDRAAEIERE 106

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVN 142
               +   ++ +  QT+++++   AVHQG+A +  PL   +L+ + +    ++++LD + 
Sbjct: 107 -GTANGHKIEVMDAQTLERMLPAGAVHQGMAFKVQPLEGVSLEDLGDPAEGIIVMLDQLT 165

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI RSA+AF   GI+   R+SP  +  LAK+A+GA E +P  R++NL+ AL+++
Sbjct: 166 DPQNVGAIFRSALAFGARGIVVQDRHSPVLAGALAKAAAGATERLPCARVTNLSRALERL 225

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G++ +GL  DS++ LE  + +    L++G+EG G+R    E    +A + MPG  ++
Sbjct: 226 ADLGWRAVGLDGDSEELLENALDHRPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFES 285

Query: 263 LNVSNAAAVALYITQN 278
           LNVSNAAAVALY    
Sbjct: 286 LNVSNAAAVALYEATR 301


>gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
          Length = 338

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 127/268 (47%), Gaps = 14/268 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----AL 78
            R  +  K   +           E   LYG  +V AAL N SR + ++  T+        
Sbjct: 66  SRAPKTIKTRMAPEAAPTVVESDEAELLYGKQSVLAALQN-SRPLNRVWLTEKLRYDPRF 124

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNS 132
            RL  DA       +  V P+ +D++      HQG+A + A       + +      R  
Sbjct: 125 LRL-LDAAKAGGAVIDIVEPRRLDQLTA-GGNHQGVAAQAAAHPYVEFEELIASLVERPD 182

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +L+  D + DPHN+GA++RSA AF   GII  +R +   +A +AK A+GA+EH+P  R+
Sbjct: 183 PVLLAADGIEDPHNLGALIRSAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARV 242

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +NL  A++++   G+Q +G    + + L +   +  + +++G+EGKG+   TQ     M 
Sbjct: 243 TNLNQAIERLKEAGYQVVGTQEKASQALYELKLDGPLVVVVGSEGKGISLLTQRHCDHMV 302

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + + G   +LN S A  + LY      
Sbjct: 303 SIPLAGKTTSLNASVAGGIMLYEVMRQR 330


>gi|222110801|ref|YP_002553065.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
 gi|221730245|gb|ACM33065.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax ebreus
           TPSY]
          Length = 248

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       + K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYYEPTRRDARMRQFLERAREAGARLIEADGLRLAKLAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A     +     L   LD +      + LL+VLD V DPHN+GA LR A   
Sbjct: 66  SHG-HQGVAARVEAVAQVRTLDELLDELEARGVKNPLLLVLDGVTDPHNLGACLRVADGA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ 
Sbjct: 125 GAHAVIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWVIGTSGDAD 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY   
Sbjct: 185 KTLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVGIPMQGAVESLNVSVASAVCLYEAL 244

Query: 278 NHFA 281
              A
Sbjct: 245 RQRA 248


>gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           fusiformis ZC1]
 gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
           fusiformis ZC1]
          Length = 250

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 13/245 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQT 100
           ++     + G + V  AL +  R + ++   +           D        V+ VP + 
Sbjct: 2   AEQNGEIIAGKNPVLEALRSG-RDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKK 60

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D++    A HQG+    A      L+ +       +     ++LD + DPHN+G+I+R+
Sbjct: 61  VDQLSS--ANHQGIVASVAAYKYAELEDLFAAAANKQEDPFFLILDELEDPHNLGSIMRT 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  KR S S +AV+AK+++GA+EH+P +R++NL   + ++   G    G  
Sbjct: 119 ADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTIDELKERGIWIAGTD 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +       +      +A+I+G+EGKG+    +E    + HL M G + +LN S AAA+ +
Sbjct: 179 AKGSADYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLM 238

Query: 274 YITQN 278
           Y    
Sbjct: 239 YEVYR 243


>gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC
           73102]
          Length = 363

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 20/256 (7%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--------PF 91
           S    + +N  +YG H V +AL    R + ++  T     RL +D +  H          
Sbjct: 98  STQPIEEDNDIIYGRHPVLSALQK-QRNLNRIWIT----TRLRYDPSFHHFLLQAKENGT 152

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPH 145
            +  V P+ +D +    A HQG+A +TAP     L  +          +++V D + DPH
Sbjct: 153 VIDEVEPKRLDYLT-NGANHQGVAAQTAPYGYIELADLIEQSKSVTDPVIVVADGITDPH 211

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R+A A    G++  +R +   ++ + K A+GALE+    R+ NL+ AL+++   
Sbjct: 212 NLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKVAAGALENFTVSRVVNLSRALEELKEA 271

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF   G ++   +P+        I L++G+EG+GL   TQ +   +  + + G   +LN 
Sbjct: 272 GFWIYGTAASGSEPVHTVNFKGPIVLVIGSEGEGLGMLTQRSCDFLVSIPLQGKTPSLNA 331

Query: 266 SNAAAVALYITQNHFA 281
           S AA +ALY      +
Sbjct: 332 SVAAGMALYEIYRQRS 347


>gi|227518063|ref|ZP_03948112.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX0104]
 gi|229550656|ref|ZP_04439381.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|257087879|ref|ZP_05582240.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257418800|ref|ZP_05595794.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|227074499|gb|EEI12462.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           TX0104]
 gi|229304222|gb|EEN70218.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|256995909|gb|EEU83211.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257160628|gb|EEU90588.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|315026626|gb|EFT38558.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX2137]
          Length = 285

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 12/281 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E  + F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120

Query: 125 TLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+ +         +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G          +      IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +G+     +    +  + M G +++LN   AA + +Y    
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280


>gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493]
          Length = 270

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107
           +YG+H VS  L+   ++I +L   +N    RL           VK +      ++ +  +
Sbjct: 27  IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 86

Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   +       L   L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 87  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 145 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 204

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 205 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 264


>gi|167756030|ref|ZP_02428157.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
 gi|167704022|gb|EDS18601.1| hypothetical protein CLORAM_01550 [Clostridium ramosum DSM 1402]
          Length = 241

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 8/235 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG +T+  AL    + ++ +    NA      +       P K V      K +G   
Sbjct: 4   YIYGKNTILEALK-GDKSVYTVYVQNNAKDNGIIEQCKRKKIPFKIVDKSEFIKKLG-NV 61

Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E       ++D + N+       LL++LD + DPHN+GAILR+  A   DG+I
Sbjct: 62  SHQGVMAEIEEYRYYSIDEIINTIPDGKQPLLLMLDGLEDPHNLGAILRTCDAIGVDGVI 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +  +AK ++GA++H+   +++NLT  L+ +    F  +G   D  +   Q 
Sbjct: 122 IGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKRSFWVVGCDLDKSQDYRQV 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             N  + +++G+EG G+    +++      L M G I +LN S A AV LY   N
Sbjct: 182 DYNMPLVIVIGSEGFGISRLVKKSCDINVVLPMVGHINSLNASVATAVILYQVYN 236


>gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 310

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 123/269 (45%), Gaps = 10/269 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A LR NH   K+ QS  ++       E   + G + V   L    P+  ++  L T    
Sbjct: 41  AHLRPNHPAAKRAQSPPRRPAKRPTDETETVLGRNPVLECLRAGVPATALYVALGTDTDE 100

Query: 79  ARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RN 131
              +  A        +  VP   +D++     +HQG+AL+  P      D +        
Sbjct: 101 RVTESVARAADSGISILEVPRADLDRMTSNH-LHQGIALQVPPYSYAHPDDLLATALGSP 159

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R
Sbjct: 160 PPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVAR 219

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT  L+     G + IGL +     ++     D + +++G+EGKGL    ++    +
Sbjct: 220 ATNLTRTLKDWADRGIRVIGLDAGGDTVVDDLDGADPLVVVVGSEGKGLSRLVRQNCDEV 279

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G  ++LN S AA V L       
Sbjct: 280 VSIPMAGQAESLNASVAAGVVLAEIARQR 308


>gi|172036714|ref|YP_001803215.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
 gi|171698168|gb|ACB51149.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. ATCC 51142]
          Length = 292

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 15/254 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-----RLDWDANLPHPFPV 93
            S    Q E+  +YG H+V AAL +  R++ ++  T N L           A+      +
Sbjct: 35  SSPEPQQSEDDLIYGRHSVLAALESD-RQLNRIWIT-NRLHYDPRFHNLIQASKAKGAVI 92

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             V  Q + +I    A HQG+A + AP     LD +        +  ++++ D + DPHN
Sbjct: 93  DEVSLQRLSQIT-NGANHQGVAAQVAPYTYHELDELITQAKANSDEPVIVIADGIADPHN 151

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+R+A A  C G+I  +R +   ++ ++K ++GALE  P  R+ NL+ AL+ + + G
Sbjct: 152 LGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVSAGALESFPVARVVNLSRALETLKAEG 211

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G  ++  K L+       I L++G+EG GL   TQ     +  + + G   +LN S
Sbjct: 212 FWIYGTVAEGGKRLQDFDFRGAIGLVIGSEGSGLSLLTQRCCDELISIPLEGKTPSLNAS 271

Query: 267 NAAAVALYITQNHF 280
            AAA+ LY      
Sbjct: 272 VAAAINLYEIYRQR 285


>gi|146319556|ref|YP_001199268.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|146321750|ref|YP_001201461.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|253752559|ref|YP_003025700.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|253754385|ref|YP_003027526.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|253756319|ref|YP_003029459.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|145690362|gb|ABP90868.1| tRNA/rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|145692556|gb|ABP93061.1| tRNA/rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|251816848|emb|CAZ52495.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|251818783|emb|CAZ56623.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|251820631|emb|CAR47391.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|292559171|gb|ADE32172.1| tRNA/rRNA methyltransferase [Streptococcus suis GZ1]
 gi|319758973|gb|ADV70915.1| tRNA/rRNA methyltransferase [Streptococcus suis JS14]
          Length = 242

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 9/240 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            +N  +YGVH V  +L  N   K++     +                 +   P +T+  +
Sbjct: 2   EQNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAAEKKVSISWTPKKTLSDM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      L  +       ++ L+++LD + DPHN G+ILR+A A  
Sbjct: 62  T-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRTADATQ 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   + V+AK+++GA+ H+P  R++NL+  L K+   GF   G   +   
Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239


>gi|307150692|ref|YP_003886076.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7822]
 gi|306980920|gb|ADN12801.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7822]
          Length = 313

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 22/273 (8%)

Query: 24  RRNHRDYKKMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           RRN +    +    ++     SQ E   +YG H V  AL   +R+I ++      +++L 
Sbjct: 27  RRNPKPVTVVAPLASEPPEQPSQEEADLIYGRHPVLTALE-GTRQINRIWV----ISKLR 81

Query: 83  WDANL--------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--- 131
           +D+           +   +  V P  + ++    A HQG+  + +P     L  +     
Sbjct: 82  YDSRFHSLLTQAKANGTVIDEVSPHRLTQLTD-GANHQGIVAQVSPYTYVELGDLIEQAR 140

Query: 132 ----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
               + ++++ D + DPHN+GAI+R+  A    G++  +R +   ++ + K A+GALEH+
Sbjct: 141 ASTPAPVILIADGITDPHNLGAIIRTTEAIGAQGLVIPQRRAVGITSSVMKVAAGALEHL 200

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  R+ NL+ AL+++   GF   G  S   K L     +  + L++G+EG+GL   TQ  
Sbjct: 201 PVARVVNLSRALEELKEAGFWIYGTMSQGSKALHTIDFSGAVGLVVGSEGEGLSLLTQRC 260

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++  + + G   +LN S AAA+ALY      
Sbjct: 261 CDALISIPLAGKTPSLNASVAAAIALYEVYRQR 293


>gi|314932755|ref|ZP_07840124.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
           C87]
 gi|313654436|gb|EFS18189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus caprae
           C87]
          Length = 249

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 118/242 (48%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E+  + G H V  A+ +    I ++L       +   +           V+TVP   +D 
Sbjct: 2   EDTVIVGRHAVKEAIVSGH-AINKILIQDGIKKQQINEILKNAKAQKLIVQTVPKSKLDF 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D    SQ        +++LD + DPHN+G+ILR+A A
Sbjct: 61  LS--NAPHQGVAALVAPYEYEDFDEFLQSQKNKDGFSTILILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  + +
Sbjct: 119 TGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKENGFWVAGTEASN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 FR 240


>gi|329767864|ref|ZP_08259378.1| RNA methyltransferase [Gemella haemolysans M341]
 gi|328838652|gb|EGF88251.1| RNA methyltransferase [Gemella haemolysans M341]
          Length = 271

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 136/269 (50%), Gaps = 18/269 (6%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENL-----FLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +++N++ YK+++  N++ +   Q   +      + G + +  A+ +  R+I ++L  +  
Sbjct: 1   MKKNNKHYKELRLKNKEQKSQVQTAEVDLDKEVIAGRNAILEAIKSG-REINKILFQEGI 59

Query: 78  LA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132
                +  +          + VP + +D        HQG+    AP     LD V N+  
Sbjct: 60  EKGRLKSIFAIANEKKIICQEVPKRKLDN--STTERHQGVIAYVAPYSYFELDEVVNNLE 117

Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++LDH+ DPHN+GAI+R+A A     II  KR +   S    K+++GA+EH+P
Sbjct: 118 INKDTTLLILDHIEDPHNLGAIIRTAEASGVKAIIIPKRRAAVVSQTAVKASAGAIEHMP 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            IR+SNLTDA++K+   GF   G +  +  +   +  K+  +A+++G EG+G+       
Sbjct: 178 VIRVSNLTDAIKKLKEKGFWIAGTTLAERSEDYTKIAKDVPLAIVIGNEGEGMSKVVTNE 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + HL M G I++LN S AA + +Y  
Sbjct: 238 CDFLYHLPMLGKIQSLNASVAAGIIMYER 266


>gi|222055495|ref|YP_002537857.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
 gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. FRC-32]
          Length = 245

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 125/244 (51%), Gaps = 9/244 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKI 104
           ++  +YG+++V  AL    R     +A+ ++  RL+   +L      PV+    + I ++
Sbjct: 2   KDEIIYGLNSVMEALRGKRRAFELFVASGSSDRRLEKLLDLAEEKRVPVRHRDKRDISRL 61

Query: 105 VGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            G +  HQG+AL T       L      +  R++ LL+VLD V DPHN+GA++RSA    
Sbjct: 62  CGTD-HHQGIALRTERFAYAQLADILESETARSNGLLLVLDGVQDPHNLGALIRSAACAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  +   +A + K+++GA+E I    ++N+   L ++ + GF   G   +S  
Sbjct: 121 AQGVIIPKDRAVGVTAAVEKASAGAIETIAVAEVTNIAQTLDELKAAGFWIYGADGESPI 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + ++     +AL++G+EG+G+RP  ++    +  + + G + +LN S A  + L+    
Sbjct: 181 SIFEQKLTGAVALVIGSEGEGIRPLVKKRCDILVSIPLKGGVNSLNASVAGGIMLFEVVR 240

Query: 279 HFAK 282
              K
Sbjct: 241 QRDK 244


>gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
 gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
          Length = 250

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 118/245 (48%), Gaps = 13/245 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQT 100
           ++     + G + V  AL +  R + ++   +           D        V+ VP + 
Sbjct: 2   TEQNGEIIAGKNPVLEALRSG-RDMNKVWIAEGVKKSGVNELLDLARERGVIVQFVPKKK 60

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D++    A HQG+    A      L+ +       +     ++LD + DPHN+G+I+R+
Sbjct: 61  VDQLSS--ANHQGIVASVAAYQYAELEDLFAAAAKKQEDPFFLILDELEDPHNLGSIMRT 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GII  KR S S +AV+AK+++GA+EH+P +R++NL   + ++   G    G  
Sbjct: 119 ADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTVDELKERGVWIAGTD 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +       +      +A+I+G+EGKG+    +E    + HL M G + +LN S AAA+ +
Sbjct: 179 AKGSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLPMVGHVTSLNASVAAALLM 238

Query: 274 YITQN 278
           Y    
Sbjct: 239 YEVYR 243


>gi|229552882|ref|ZP_04441607.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|258540508|ref|YP_003175007.1| TrmH family group 3 RNA methyltransferase [Lactobacillus rhamnosus
           Lc 705]
 gi|229313751|gb|EEN79724.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|257152184|emb|CAR91156.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           rhamnosus Lc 705]
          Length = 260

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           + F++G H V AAL    +  I +L      K+   +            V T P Q +D 
Sbjct: 15  DEFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD- 73

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++     HQG+ L   P    TLD +             ++LD++ DPHN+G+ILR+A A
Sbjct: 74  LMSDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADA 133

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G + D 
Sbjct: 134 SGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDG 193

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   Q       AL++G EGKG+ P   +   +   + M G +++LN S AA + +Y  
Sbjct: 194 -QDYRQWDAKGSTALVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 252


>gi|299135282|ref|ZP_07028473.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
 gi|298590259|gb|EFI50463.1| RNA methyltransferase, TrmH family, group 3 [Afipia sp. 1NLS2]
          Length = 272

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 113/262 (43%), Positives = 158/262 (60%), Gaps = 1/262 (0%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           ++ + ++R   + +      R+    +    LYG HTV+ AL NP RKI +L  T+NAL 
Sbjct: 8   SRFKGSNRTPPRGRGGPPHRRNREDRDGPAILYGWHTVTLALANPKRKIRKLFVTENALR 67

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           RL  +         + V P  ID+ +G +AVHQGL  E  PL +  +  +    +++VLD
Sbjct: 68  RLQDENIDLKKLTPEVVRPSVIDQRLGPDAVHQGLLAEADPLPALDISELPQDGIVLVLD 127

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+GAILRSA AF+   ++TT R+SP  + VLAKSASGALE +P + + NL  AL
Sbjct: 128 QITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPVVIVQNLARAL 187

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +M   GF T+GL S+    L +      +AL+LGAEGKGLR  T+ET  ++A L MPG 
Sbjct: 188 TEMKEHGFLTVGLDSEGSTNLAETELRAPLALVLGAEGKGLRQLTRETCGTVARLDMPGE 247

Query: 260 IKALNVSNAAAVALYITQNHFA 281
           IK+LNVSNA A+ALYI  +   
Sbjct: 248 IKSLNVSNATALALYIGASRLG 269


>gi|294139210|ref|YP_003555188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Shewanella
           violacea DSS12]
 gi|293325679|dbj|BAJ00410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Shewanella
           violacea DSS12]
          Length = 251

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 15/249 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
            +    +G+H V A L +   ++ +L        +      ++   +   V+    + +D
Sbjct: 2   KKQDITFGIHAVEAVLKHSPERVIELWVLLGRDDKRLMPILESAAEYGVSVQYAARKVLD 61

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVR----NSQLLMVLDHVNDPHNIGAIL 151
              G    HQG+      +       L+  LD +      +  L++LD V DPHN+GA L
Sbjct: 62  DKSG-GGQHQGVLARVKAVKQLNDKDLTALLDKIEVENTETPFLLILDGVTDPHNLGACL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G
Sbjct: 121 RNADAAGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVG 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + +++  L +      +A+ +GAE KGLR  T+E   S+  + M G + +LNVS A+ V
Sbjct: 181 AAGEAEHNLYKADLKGSLAIAMGAEDKGLRRLTREGCDSLVSIPMTGSVSSLNVSVASGV 240

Query: 272 ALYITQNHF 280
            L+      
Sbjct: 241 CLFEAVRQR 249


>gi|118586220|ref|ZP_01543685.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
 gi|118433349|gb|EAV40050.1| tRNA/rRNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
          Length = 254

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 11/249 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVK 94
           +K +         +YGVH     L N    I +L  +K      A+        +   V+
Sbjct: 2   RKLKVGRPVSEEIVYGVHASMETLENNQ-TINKLYLSKSLAKNRAQQFRQTAEQNKIVVQ 60

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGA 149
            V  Q +D++      HQG+AL  A      LD + N        L++LD + DPHN+G+
Sbjct: 61  EVDNQRLDELT-NHGNHQGIALSIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGS 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A A   DGII  KR +   + V+AK+++GA+EH+P  R+ N+ + + K+    F  
Sbjct: 120 ILRTADATGVDGIIIPKRRAVQLTQVVAKTSTGAIEHVPVARVVNINNTIDKLKKANFWI 179

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G              +  +A+++G EGKG+  +T++    M  + M G +++LN S AA
Sbjct: 180 FGTDMKGA-DYTDWNADGPVAIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAA 238

Query: 270 AVALYITQN 278
           A+ +Y   N
Sbjct: 239 ALLIYQGFN 247


>gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
 gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
          Length = 288

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 16/289 (5%)

Query: 7   KKSEKIFSLKDSHYAK---LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
            +  K F  ++    K    ++  R  +K     + +    + +   + G       L +
Sbjct: 2   TRDNKNFDKRNRQPKKPNFSKKTDRTERKFVKPIEDTVEEQETDRDLVAGRLPAIEVLKS 61

Query: 64  PSRKIFQLLATKN-ALARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAP 120
             R I ++   +  + ++++   NL     V+   VP   +D++V     HQG+ +  + 
Sbjct: 62  -ERDINKIFLQEGLSGSKMEEIQNLAKKRSVQISFVPKSKLDQLVD-GMNHQGVVVAASA 119

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
               T+D +             ++LD V DPHN+G+I+R+A A    GII  KR +   +
Sbjct: 120 FQYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADAIGAHGIIIPKRRAVGLT 179

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           A +AK+++GA+EH+   R++NL  A++++   G    G   +  +   Q      I L++
Sbjct: 180 ATVAKASTGAIEHVAVARVTNLVQAIKELKERGLWLYGTDMEG-QDYRQWETTLPIGLVM 238

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G EGKG+    +E    M  + M G +++LN S AA++ +Y       K
Sbjct: 239 GNEGKGISRLVKEQMDGMITIPMTGHVQSLNASVAASLLMYEVYRGRNK 287


>gi|282852715|ref|ZP_06262057.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           224-1]
 gi|282556457|gb|EFB62077.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus gasseri
           224-1]
          Length = 275

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 13/238 (5%)

Query: 48  NLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           + F+YG H     L     N   K+F     +   A   +         V+  P   +D+
Sbjct: 6   DEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQ 65

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +V     HQGL L  AP     LD + +          +++LD + DPHN+G+ILR+  A
Sbjct: 66  MV-NHENHQGLVLTVAPFEYADLDELLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  KR +   ++V+AK+++GA++++P  R++NL    + +   G+   G + + 
Sbjct: 125 TGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKLLKKRGYWIFGTAMEG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +   N K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 185 E-DYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|269798074|ref|YP_003311974.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           DSM 2008]
 gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           DSM 2008]
          Length = 243

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 116/239 (48%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V  AL +  R I ++L +++ +        D        V+  P + ++K   
Sbjct: 4   YIVGRNAVKEALKSG-RSIQRILVSEDRVKTGLADIVDLAKSQGIEVRPTPVKQMNK-YD 61

Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+    + +    L     +      LL++ D V DPHN+GAI+R+A       
Sbjct: 62  LEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  KR++   +A +AK+++GA+E IP ++I N+T  ++++   GF  +G   +  + L 
Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVTQTIKQLQKQGFWVMGAHMEGDRTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +        +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|170728541|ref|YP_001762567.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella woodyi
           ATCC 51908]
 gi|169813888|gb|ACA88472.1| RNA methyltransferase, TrmH family, group 3 [Shewanella woodyi ATCC
           51908]
          Length = 245

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 109/244 (44%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQTID 102
            +    +G+H V A L +   ++ ++         RL     +   +   V+    + +D
Sbjct: 2   KKQDITFGIHAVEAVLKHSPERVIEMWVQAGRDDQRLASLLQMAAEYGISVQKAARKVLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSP------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                   HQG+      +         +L     +   ++LD V DPHN+GA LR+A A
Sbjct: 62  DKSDSGQ-HQGVLARVKAVKQLNDNDLLSLVEKTETPFFLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQEKGVWIVGAAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L +      +A+ +GAE KGLR  T+E+  S+A + M G + +LNVS A  + L+  
Sbjct: 181 DSDLYKTDLKGPLAIAMGAEDKGLRRLTRESCDSIASIPMAGSVSSLNVSVATGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|150010995|gb|ABR57153.1| SpoU rRNA methylase family protein [Staphylococcus xylosus]
          Length = 249

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 126/243 (51%), Gaps = 15/243 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTID 102
           E + + G H V  A+ +    I ++L      K  +  +   AN      V++VP   ID
Sbjct: 2   EEIVIVGRHAVKEAIVSGH-TINKILIQDTIKKGQINEILKKAN-SRKIIVQSVPKSKID 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAV 155
            +   ++ HQG+A   AP      DA    Q        +++LD + DPHN+G+ILR+A 
Sbjct: 60  GLS--DSPHQGIAAYIAPYEYADFDAFLEKQKAQDKLSTVLILDGLEDPHNLGSILRTAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG+I  KR S + +  +AK+++GA+EHIP +R++NL + ++ +   G+  +G  ++
Sbjct: 118 ASGVDGVIIPKRRSVALTQTVAKASTGAIEHIPVMRVTNLANTIETLKDNGYWVVGTEAN 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +     +      +A+++G+EG+G+    ++      ++ M G + +LN S AA++ +Y 
Sbjct: 178 NSTDYREMDVAMPLAIVIGSEGQGMSRLVKDKCDFYINIPMVGHVNSLNASVAASLMMYE 237

Query: 276 TQN 278
              
Sbjct: 238 VFR 240


>gi|30018362|ref|NP_829993.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|206972200|ref|ZP_03233147.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           AH1134]
 gi|218232294|ref|YP_002364941.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
 gi|296500926|ref|YP_003662626.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|29893902|gb|AAP07194.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|206732774|gb|EDZ49949.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           AH1134]
 gi|218160251|gb|ACK60243.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus B4264]
 gi|296321978|gb|ADH04906.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
          Length = 247

 Score =  248 bits (634), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+ +             ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGTMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|116621924|ref|YP_824080.1| RNA methyltransferase [Candidatus Solibacter usitatus Ellin6076]
 gi|116225086|gb|ABJ83795.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 237

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 3/233 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
            L G+H V  AL   +     ++A      RL    +L      PV+  P  ++D++ G 
Sbjct: 3   LLSGIHPVVEALRAGNPLERIVIAQGAGGPRLQEIIDLARQAKIPVRFEPRPSLDRLAGS 62

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            A HQG+    A      LD+V  S++L+VLD V DPHN+GAI+R+A A     +I  +R
Sbjct: 63  SA-HQGVVGLGAARKYADLDSVAESEMLVVLDGVEDPHNLGAIVRTAHAAGAGAVIVPER 121

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   + V+AK+A+GALEH+P +R++N+  AL+ +   G    GL     +  +Q     
Sbjct: 122 RAAGVTDVVAKAAAGALEHLPVVRVTNINRALEDLKERGMWIYGLDERGTESYDQIDYAK 181

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           K  L+LG EGKGL  + ++    +  + M G I +LNVS AA V L+  +   
Sbjct: 182 KSVLVLGGEGKGLHEQVRKHCDVLVRIPMAGQISSLNVSVAAGVVLFEWRRRR 234


>gi|332526798|ref|ZP_08402899.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332111200|gb|EGJ11232.1| RNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 262

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 9/258 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPF 91
           + +F +     +   N  L+G H V+  L    + + ++        AR+          
Sbjct: 6   LPAFRRALSQVNPVSNKVLFGFHAVTVRLKTAPQSVKEIHVDATRRDARMRQFVERAEAA 65

Query: 92  PVKTVPP--QTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDP 144
             K V    + + ++ G    HQG+     PL     L   LDA   + L++VLD V DP
Sbjct: 66  GAKLVDSDGERLTQLAGSGR-HQGVVARVTPLATTHSLDDALDAAVGAPLVLVLDGVTDP 124

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GA LR A       ++  K ++   +A +AK ASGA E +PY+ ++NL  +L +M  
Sbjct: 125 HNLGACLRVADGAGACAVVAPKDHAVGLNATVAKVASGAAETVPYLMVTNLARSLGEMKE 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              + IG S D+ K +        +AL+LGAEG G+R  T++T   +  + M G +++LN
Sbjct: 185 RDIRVIGTSDDATKTIYDVDLRGPVALVLGAEGHGMRQLTRKTCDELVRIPMQGAVESLN 244

Query: 265 VSNAAAVALYITQNHFAK 282
           VS AA + LY      ++
Sbjct: 245 VSVAAGICLYEALRQRSR 262


>gi|264679078|ref|YP_003278985.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           CNB-2]
 gi|299533339|ref|ZP_07046722.1| RNA methyltransferase [Comamonas testosteroni S44]
 gi|262209591|gb|ACY33689.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           CNB-2]
 gi|298718655|gb|EFI59629.1| RNA methyltransferase [Comamonas testosteroni S44]
          Length = 256

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 13/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       + K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEVYFEASRRDARMRQFLERAKEAGVRLIEADALRLAKLAG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVR---------NSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A     +                   + LL+VLD V DPHN+GA LR A   
Sbjct: 66  SHG-HQGVAARVEEVKDTRTLDELLDDLEEEGVKAPLLLVLDGVTDPHNLGACLRVADGA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L+++   G   IG S D+ 
Sbjct: 125 GVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLKELKERGIWIIGTSGDAD 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L Q       AL+LGAEG G+R  T++T  ++  + M G +++LNVS A+ V LY   
Sbjct: 185 KHLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEAL 244

Query: 278 NHF 280
              
Sbjct: 245 RQR 247


>gi|241895139|ref|ZP_04782435.1| TrmH family tRNA/rRNA methyltransferase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871635|gb|EER75386.1| TrmH family tRNA/rRNA methyltransferase [Weissella
           paramesenteroides ATCC 33313]
          Length = 268

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 16/263 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD- 84
           R+ KK Q+  ++ +H  Q EN   F+YG H    AL     +I ++        +   + 
Sbjct: 4   RNNKK-QAGGKRQQHEPQGENQAEFVYGHHAAVEALK-GQTEINKVWLQTGLADKARNEL 61

Query: 85  --ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLL 135
                     ++  P   +D++   E  HQG+ L  A     T+D +         +   
Sbjct: 62  ASLAKKRGLVMQDAPKAKLDELTNGE-NHQGVVLSIAAYAYVTIDDLFAKAAEKDEAPFF 120

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD + DPHN+G+I+R+A A    GII  KR +   ++V+AK+++GA+EH+P  R++NL
Sbjct: 121 LVLDSIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVTNL 180

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++++   G    G   +      +       ALI+G EGKG+ P  +++      + 
Sbjct: 181 VQTVEQLKERGVWVFGTDMNG-NDYRRWDATGATALIIGNEGKGISPLLKKSVDETLTIP 239

Query: 256 MPGIIKALNVSNAAAVALYITQN 278
           M G +++LN S AA++ +Y   N
Sbjct: 240 MIGHVQSLNASVAASLLIYQGYN 262


>gi|197104675|ref|YP_002130052.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196478095|gb|ACG77623.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 265

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 93/258 (36%), Positives = 143/258 (55%), Gaps = 5/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82
           R + R  KK +  +   +    P + +++G H V AAL NP R    +LLAT     ++ 
Sbjct: 7   RNDARRGKKFRPQSGFRKPREAPSDEWIWGWHAVEAALANPRRGAPLRLLATPEKAKQI- 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDH 140
            +A       ++      I + + + AVHQG+AL  APL    L     R   +L++LD 
Sbjct: 66  -EARFGRLKALEPADNHAIAQALPQGAVHQGVALRPAPLPEADLADFEPRPGAVLLMLDQ 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+GAILRSA AF   G+I   R++P  +  LAK+A+GA+E  P   + NL+ AL 
Sbjct: 125 VTDPQNVGAILRSAAAFGAAGLILQDRHAPKLTGALAKAAAGAVERTPVAHVVNLSRALD 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++   G++T+GL+   ++ L + +    + L+LG+EG+GLR    E    +A + MPG  
Sbjct: 185 ELIDAGWRTVGLAGGGERSLGEVLDGSPVVLVLGSEGEGLRRLVAERCDELARIPMPGGF 244

Query: 261 KALNVSNAAAVALYITQN 278
           ++LNVSNAAA+ALY    
Sbjct: 245 ESLNVSNAAAIALYEASR 262


>gi|224542352|ref|ZP_03682891.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524734|gb|EEF93839.1| hypothetical protein CATMIT_01531 [Catenibacterium mitsuokai DSM
           15897]
          Length = 241

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 8/236 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++YG +TV   L    R++ +++    +           +   ++        K+VG  
Sbjct: 3   EWIYGKNTVRELL-TGPRQVHEVMIQNQSKNDDIVKLCRKNNIKMRMTDKNGFIKLVG-N 60

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+           L+ +          LL++LD + DPHN+GAI+R+  A   DG+
Sbjct: 61  VNHQGVMALIDGYDYTPLEDIVRNIPEGKQPLLLMLDGMEDPHNLGAIIRTCDAIGVDGV 120

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K+ S   +A +AK ++GA++H+P  +++NL+  L  +   GF  +G   D+      
Sbjct: 121 IIGKKRSVGLNATVAKVSTGAIDHVPVAQVTNLSRTLDSLKKEGFWVVGCELDNSTDYRA 180

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              N  + L++G+EG G+    +E       L M G + +LN S A AV LY   N
Sbjct: 181 VDYNMPLVLVIGSEGFGISRLVKEHCDMNVILPMVGHVNSLNASVATAVLLYQVYN 236


>gi|223982632|ref|ZP_03632866.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
           12042]
 gi|223965412|gb|EEF69690.1| hypothetical protein HOLDEFILI_00140 [Holdemania filiformis DSM
           12042]
          Length = 261

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V   L +  +K+ + L  + A              P + V  + +DK    + 
Sbjct: 23  WIYGKNAVMQILKS-KKKVEKALVAEGAKFPEAETLLKNRRIPTQRVSRKELDK-CCMDT 80

Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+AL      + +++ +           +++LD + DPHN+GA+LR+  A   DG+I
Sbjct: 81  HHQGIALYCEDYKTVSVEEMLERIPSGKLGTIVILDELEDPHNLGAVLRTCDAVGADGVI 140

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S S ++ +AK ++GA+E +P   ++NLT  L+++   G+   G    + +   Q 
Sbjct: 141 LRKNRSVSLNSTVAKVSTGAIETVPVAMVANLTQTLKQLKEKGYWVYGTDMRNAQDYRQP 200

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  +AL++G+EGKG+    +E    M  L M G I +LN S A AV LY
Sbjct: 201 AFDTPVALVIGSEGKGISRLVKEECDVMLTLPMEGTISSLNASVACAVLLY 251


>gi|310816761|ref|YP_003964725.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
           vulgare Y25]
 gi|308755496|gb|ADO43425.1| RNA methyltransferase, TrmH family, putative [Ketogulonicigenium
           vulgare Y25]
          Length = 262

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 98/250 (39%), Positives = 145/250 (58%), Gaps = 11/250 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            +++R  S  E ++L+G+H V  AL NP R   +L+ T+NA  +L  DA       V+  
Sbjct: 10  KEQARRVSAQETVWLFGLHAVRDALLNPERTRLRLVVTQNAADKLA-DAIAASGMEVELS 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149
            P+     +  E+VHQG ALE  PL   +L  V            L++LD V DPHN+GA
Sbjct: 69  DPRKFAAPIDPESVHQGAALEVKPLDWGSLADVALSLKDNGQPPRLVLLDRVTDPHNVGA 128

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILRS+  F    ++  +R+S  E+  LAK+ASGALE  PYIR+ NL DA+ ++ + G+  
Sbjct: 129 ILRSSEVFGALAVVGVQRHSAPETGALAKTASGALERQPYIRVRNLGDAMDELRAMGYLL 188

Query: 210 IGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +GL  + ++ +EQ I   ++  +A+++GAEG GLR KT+E    +  +   G   +LNVS
Sbjct: 189 LGLDGEGEQTIEQAIEGRRDRPVAIVMGAEGPGLREKTRELCDHLVRIPAAGGFASLNVS 248

Query: 267 NAAAVALYIT 276
           NAAAVALY  
Sbjct: 249 NAAAVALYAV 258


>gi|153813242|ref|ZP_01965910.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
 gi|149830655|gb|EDM85746.1| hypothetical protein RUMOBE_03658 [Ruminococcus obeum ATCC 29174]
          Length = 247

 Score =  248 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R            +  V  + +D++    
Sbjct: 5   IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKTDTIINYVSKERLDQLSETH 64

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+  + A     T+D +         +  L++LD+V DPHN+GAI+R+A      G
Sbjct: 65  A-HQGVIAQVAAYDYSTVDEILARAEEKGEAPFLIILDNVEDPHNLGAIIRTANLAGAHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   ++ +AK+++GA+ + P  +++N+   ++++   G   +      +  + 
Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNIVRTIEELKEKGIWFVCADMGGET-MY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
                  + L++G EG+G+    +E     A + M G I +LN S AA V  Y   +   
Sbjct: 183 DLDLTGPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQRL 242

Query: 281 AK 282
           AK
Sbjct: 243 AK 244


>gi|281492485|ref|YP_003354465.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376149|gb|ADA65640.1| 23S rRNA Gm2251 methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 242

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
                +YG+H V+ ALN     + +L   ++   +      +        +   P   ++
Sbjct: 2   ENTDLIYGLHAVTEALN--GDLVNKLYVQEDLRGKNVEKIKELARLKKVNISWTPKTELN 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+  +  VHQG     +      L+ +      ++   +++LD + DPHN+G+I R+A A
Sbjct: 60  KLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II  K  +   +    K+++GAL+H+P +R++NL+  L K+ +  F   G   D 
Sbjct: 119 TGVDAIIIPKHRAVGITPTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +     K+ALI+G EG G+    ++    M  + M G +++LN S AA++ +Y  
Sbjct: 179 -TVYSKWNTKGKVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEI 237

Query: 277 QNHF 280
             + 
Sbjct: 238 FRNR 241


>gi|229003106|ref|ZP_04160955.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228758142|gb|EEM07338.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock1-4]
          Length = 247

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 118/241 (48%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+ +             ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   N  I L++G+EGKG+     E    + HL M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLIHLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|220930680|ref|YP_002507589.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
 gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
          Length = 315

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 12/247 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTID 102
            E+  L G ++V  AL    R I +L   K       R               V    +D
Sbjct: 71  EESDKLEGRNSVMEALKAN-RTINKLFIAKGEKEGSIRQIIALARQKGIITTEVDKIILD 129

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
            +      HQG+    A      +D +            +++LD ++DPHN GAILR+A 
Sbjct: 130 GM-STTRSHQGVIAYVAVKDYVEVDDILAVAQENGEPPFIIILDEISDPHNFGAILRTAN 188

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  KR +   ++ +AK+++GA+E++P  R++N++  ++ +       +G  S 
Sbjct: 189 AVGAHGVIIPKRRAIGLTSTVAKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDST 248

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +K   +      IAL++G+EG+G+    +E    + ++ M G I +LN S AAA+ +Y 
Sbjct: 249 GEKAFYESDLKGPIALVVGSEGEGMGKLVREKCDFVVNIPMQGEISSLNASVAAAIVMYE 308

Query: 276 TQNHFAK 282
                 K
Sbjct: 309 ILKQRGK 315


>gi|310659526|ref|YP_003937247.1| hypothetical protein CLOST_2222 [Clostridium sticklandii DSM 519]
 gi|308826304|emb|CBH22342.1| putative enzyme [Clostridium sticklandii]
          Length = 242

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL +  R I  L      K    +            +K V    +D++  +
Sbjct: 3   ISGRNPVLEALKSN-RTIDCLYIKAGDKEGSIKKILSIAKEQKILIKEVDKTKLDELA-E 60

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+           L+ V             ++LD + DPHN+GAI+RSA      
Sbjct: 61  GTQHQGVVALVTDYKYYELEEVLDEIREKDEKPFFIILDEIEDPHNLGAIIRSAEGAGAH 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  KR S S +A + K+A+GA  ++  I+++NL   ++K+   G     L  D +   
Sbjct: 121 GVIIPKRRSASVNATVEKTAAGAASYMKVIKVTNLVSTVEKLKKEGIWIYALDMDGE-SY 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +       +AL++G EGKG+    ++       + M G + +LN S AA++ LY      
Sbjct: 180 DTVDLKGSVALVVGNEGKGISRLLKDNCDFTLKIPMKGNVGSLNASVAASILLYEVVRQR 239


>gi|199598532|ref|ZP_03211949.1| rRNA methylase [Lactobacillus rhamnosus HN001]
 gi|199590574|gb|EDY98663.1| rRNA methylase [Lactobacillus rhamnosus HN001]
          Length = 260

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 48  NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           + F++G H V AAL    +  I +L      K+   +            V T P Q +D 
Sbjct: 15  DEFVFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKILVATAPKQKLD- 73

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++     HQG+ L   P    TLD +             ++LD++ DPHN+G+ILR+A A
Sbjct: 74  LMSDHGNHQGVLLAMTPYAYATLDDLFKHAADKGEDPFFLLLDNLEDPHNLGSILRTADA 133

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  +   ++ +AK ++GA+E++P  R++NL   ++ +   G    G + D 
Sbjct: 134 SGVHGIIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKILKDRGMWIFGTAMDG 193

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   Q       A+++G EGKG+ P   +   +   + M G +++LN S AA + +Y  
Sbjct: 194 -QDYRQWDAKGSTAIVIGNEGKGISPGIAKLMDATIAIPMVGHVQSLNASVAAGILMYQA 252


>gi|257417470|ref|ZP_05594464.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG]
 gi|257159298|gb|EEU89258.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
          Length = 285

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 12/281 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E  + F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPAIAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120

Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+ +         +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G          +      IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +G+     +    +  + M G +++LN   AA + +Y    
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280


>gi|218245150|ref|YP_002370521.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|257058176|ref|YP_003136064.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8802]
 gi|218165628|gb|ACK64365.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8801]
 gi|256588342|gb|ACU99228.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           8802]
          Length = 292

 Score =  248 bits (633), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 118/256 (46%), Gaps = 13/256 (5%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPF 91
             + S    +  N  +YG H+V AAL +  R++ ++  T     +A       A      
Sbjct: 32  VAKPSPQEEEEANDLIYGRHSVLAALESD-RQLNRIWITNKLHYDARFHTLIQAAKAKGS 90

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            +  V  Q ++++      HQG+A + AP     L+ +        N  ++++ D + DP
Sbjct: 91  VIDEVSIQRLNQLT-HGGNHQGVAAQVAPYAYHELETLIEQAKASSNEPVIVIADGIADP 149

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAI+R+A A    G++  +R +   ++ + K A+GALE  P  R+ NL+ AL+ +  
Sbjct: 150 QNLGAIIRTAEALGTQGLVIPQRRAAGVTSTVIKVAAGALESFPVARVVNLSRALETLKE 209

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            GF   G ++   K L        I L++G+E  GL   T+     +  + + G   +LN
Sbjct: 210 AGFWIYGTAATGGKSLHNMELRGPIGLVIGSEESGLSLLTERCCDQLISIPLTGKTPSLN 269

Query: 265 VSNAAAVALYITQNHF 280
            S AAA+ LY      
Sbjct: 270 ASVAAAIVLYEVYRQR 285


>gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
 gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
          Length = 319

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 128/290 (44%), Gaps = 14/290 (4%)

Query: 5   SKKKSEKIFSLK--DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           SKK+  K    K   S  AK        K  +  N +  +    EN  L G +++  AL 
Sbjct: 32  SKKRGGKPEERKGFKSEPAKRTTYAAPVKDTEFENIEKENAVPEENDKLEGRNSIMEALK 91

Query: 63  NPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              R I +L   K       R               V    +D +    + HQG+    A
Sbjct: 92  AN-RTINKLFIAKGEKEGSIRQIIAMARQKGIITTEVDKSILDGMSSTRS-HQGVIAYVA 149

Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                 +D +            +++LD ++DPHN GAILR+A A    G+I  KR +   
Sbjct: 150 VKDYVEVDDILAAAQEKGEPPFIIILDEISDPHNFGAILRTANAVGAHGVIIPKRRAIGL 209

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           ++ ++K+++GA+E++P  R++N++  ++ +       +G  S  +K   +      +AL+
Sbjct: 210 TSTVSKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDSTGEKAFYESDLKGPMALV 269

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +G+EG+G+    +E    + ++ M G I +LN S AAA+ +Y       K
Sbjct: 270 VGSEGEGMGKLVREKCDFVVNIPMKGEISSLNASVAAAIVMYEILKQRGK 319


>gi|315499721|ref|YP_004088524.1| RNA methyltransferase, trmh family, group 3 [Asticcacaulis
           excentricus CB 48]
 gi|315417733|gb|ADU14373.1| RNA methyltransferase, TrmH family, group 3 [Asticcacaulis
           excentricus CB 48]
          Length = 322

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 155/301 (51%), Gaps = 26/301 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQP---------ENLFL 51
           N   K  S+  FS +   YAK + R+   Y   Q+   +++  +Q          E+ ++
Sbjct: 17  NGPKKSGSKAAFSGQSKPYAKDKPRDKGGYAPAQTARSQTQTHAQARPKPPVRVSEDGWI 76

Query: 52  YGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +G+H V AAL N SR    +L  T +    L+  A       V+          + + AV
Sbjct: 77  WGLHAVEAALKNQSRLGPIRLYVTPDRQKALEQVAPKRGDLHVRLTEMAEFSGFLPQGAV 136

Query: 111 HQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           HQG+AL   PL    L+ +      +   +L++LD V DP NIGAILR+  AF   G+I 
Sbjct: 137 HQGVALNGPPLEGDDLNGLMEGALRQERPVLVMLDQVTDPQNIGAILRTCAAFGAAGLIM 196

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             R+SP    VLAK+A+GA++ +P+ R++NL+ AL+ +   GF ++G++ +++  L+  +
Sbjct: 197 QDRHSPVMQGVLAKTAAGAMDRVPFARVTNLSRALESLTENGFVSLGMAGEAEHSLQAVL 256

Query: 225 ---------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                        + +++G+EG+GLR    E    +  + MPG  ++LNVS+A ++ALY 
Sbjct: 257 EQQGWRQAGSPRALVIVMGSEGEGLRRLVAEHCDHLVKIPMPGGFESLNVSHATSIALYE 316

Query: 276 T 276
            
Sbjct: 317 A 317


>gi|81429291|ref|YP_396292.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610934|emb|CAI55986.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 295

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 130/284 (45%), Gaps = 15/284 (5%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NP 64
            +K+ +  S + +            KK  +  +++    + +  F+ G H     L  + 
Sbjct: 10  NQKNNEFNSRRTAKNTAKPTRRPANKKPAAPVEEA--AVEEQTDFVIGKHASLETLKTSD 67

Query: 65  SRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           ++KI ++       A    D           ++ VP   +D ++     HQG+ L  AP 
Sbjct: 68  AKKINKIFLQDGLKADFVHDVVKLAKEKRLIIQNVPKNKLD-LLSDRQNHQGIILAIAPF 126

Query: 122 LSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              ++D +            +++LD++ DPHN+G+I+R+A A    GII  K  +   ++
Sbjct: 127 EYASVDDIFAKAKAQEEEPFILILDNLEDPHNLGSIMRTADAVGVHGIIIPKHRAVGLTS 186

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +AK+++GA+EHIP  R++NLT  ++K+   G    G    +     +      I LI+G
Sbjct: 187 TVAKTSTGAIEHIPVARVTNLTQEIKKLKDRGLWIFGTDM-AGTDYRKWDAKGPIGLIIG 245

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            EGKGL P  ++       + M G +++LN S AA V +Y   N
Sbjct: 246 NEGKGLSPIVKKEVDQTLTIPMVGHVQSLNASVAAGVLMYQAYN 289


>gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
 gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
          Length = 370

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 138/287 (48%), Gaps = 15/287 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           S+    +    +DS   +  R  R + +      KS       +  L+G H   AAL   
Sbjct: 29  SRDGEARGSRSQDSRSLRSDRQDRRFDEKPRGEAKSHSADSVADDLLWGRHATQAALE-A 87

Query: 65  SRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
            R I ++  T          +L  DA       V+ V    + ++ G  AVHQG+AL+TA
Sbjct: 88  GRPIHRIWCTSEMRSAPRFMQLLRDAK-ASGVLVEEVTWARLAQMTG-GAVHQGIALQTA 145

Query: 120 PLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
              +  L        A++ + LL+ LD + DPHN+GAI+RSA A    G++  +R S   
Sbjct: 146 AAETLDLSDLIEGCAALQEAPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGL 205

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  +AK A+GALEH+P  R+ NL  +L+ +   G++ +GL+ +  + LE+   +  + ++
Sbjct: 206 TGSVAKVAAGALEHLPVARVVNLNRSLETLKDAGYRVVGLAEEGDQTLEEVDLDGPLVVV 265

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            G+E +GL   T+     +  + + GI  +LN S A A+ LY     
Sbjct: 266 TGSEDQGLSMLTRRHCDHLIRIPLRGITPSLNASVATALCLYEVARR 312


>gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           matruchotii ATCC 14266]
 gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           matruchotii ATCC 14266]
          Length = 320

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 26/290 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63
           + K  ++++    +H  KL R  RD         + RH        + G + V   L+  
Sbjct: 37  TPKAEDRVYHA--AHKRKLERQRRD---------QGRHDRSASTELVVGRNPVIECLHAR 85

Query: 64  -PSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            P+  ++    T+N   RL     L H    P+  VP   +D + G   +HQG+ L+  P
Sbjct: 86  VPATALYIAQGTRN-DDRLTEAVQLAHSRSIPLIEVPRIELDSMTG-NGLHQGVGLQIPP 143

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +  +       +   +++VLD++ DP N+GA++RS  AF   G++  +R S S +
Sbjct: 144 FEYADVFDLIGTVADSKEQGMIVVLDNITDPRNLGAVIRSTAAFGGQGVVIPERRSASVT 203

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           AV  ++++G    +P  + +N+T  L++    G+Q +GL +      +       + +++
Sbjct: 204 AVAWRTSAGTAARLPVAKATNITRTLKEFQQNGYQVVGLDAGGDTTYDSYDGTGPVVIVV 263

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
           G+EGKGL    +ET   +  +     +++LN S AA V L  +  Q   A
Sbjct: 264 GSEGKGLSRLVRETCDVLVSVPTTSWVESLNASVAAGVVLSEFSRQRRAA 313


>gi|42518495|ref|NP_964425.1| hypothetical protein LJ0402 [Lactobacillus johnsonii NCC 533]
 gi|227888793|ref|ZP_04006598.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
 gi|268318914|ref|YP_003292570.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|41582780|gb|AAS08391.1| hypothetical protein LJ_0402 [Lactobacillus johnsonii NCC 533]
 gi|227850630|gb|EEJ60716.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
 gi|262397289|emb|CAX66303.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|329666766|gb|AEB92714.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 251

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 13/238 (5%)

Query: 48  NLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           + F+YG H     L     N   K+F     +   A   +         V+  P   +D+
Sbjct: 6   DEFVYGRHAGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQ 65

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +V     HQGL L  AP     LD + +          +++LD + DPHN+G+ILR+  A
Sbjct: 66  MV-NHENHQGLVLTVAPFEYADLDELLDKFDQEGKEPFILMLDSIEDPHNLGSILRTCDA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  KR +   ++V+AK+++GA++++P  R++NL    + +   G+   G + + 
Sbjct: 125 TGVDAVIIPKRRASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKMLKKRGYWIFGTAMEG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +     K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 185 E-DYRKWNAKGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|78222568|ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
 gi|78193823|gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
          Length = 250

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/244 (27%), Positives = 120/244 (49%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDK 103
           +   LYG+++   AL    R+ F+L  +++A   R++    L      PV+    + I +
Sbjct: 2   KEEILYGINSAMEALR-GKRRAFELFVSRDASDRRMEKLLKLATEKGVPVRNRDKRDISR 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+AL+        L  +           L++ LD V DPHN+GA++RSA  
Sbjct: 61  LCGTD-HHQGVALKLEGFPYTGLSDIIDAWRESGERGLILALDGVQDPHNLGALIRSAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  K  +   +A + KSA+GA E IP  +++NL  AL ++   GF   G +  +
Sbjct: 120 AGAHGVIIPKDRAARVTATVEKSAAGAAETIPVAQVTNLAQALDELKEAGFWIYGAADSA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L  +  +  + +++G+EG+G+RP  ++    +  + + G + +LN S A  V L+  
Sbjct: 180 ASSLYDQDLSGNVVIVIGSEGEGVRPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILFEV 239

Query: 277 QNHF 280
               
Sbjct: 240 LRQR 243


>gi|210623156|ref|ZP_03293610.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
 gi|210153789|gb|EEA84795.1| hypothetical protein CLOHIR_01560 [Clostridium hiranonis DSM 13275]
          Length = 244

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 109/241 (45%), Gaps = 13/241 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            + G + V  A+ N  R I +LL +   K    +            ++ V    +D++  
Sbjct: 3   IIEGRNPVIEAIKND-RHIEKLLISNSSKEGSIKKIIAMAKEKKIVIQYVDRHKLDEMST 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+    +  +   ++ V            +++LD + DPHN+G+I+R+A A   
Sbjct: 62  SHA-HQGVIATISDYIYKDIEEVVREVKEKGEDPFIIILDEITDPHNLGSIIRTADAVGA 120

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++  KR S   + V+AK+++GA+E++P  +++N+ + ++ +   G        D    
Sbjct: 121 HAVVIPKRRSVDITPVVAKASAGAVEYVPVCKVTNIVNTIKMLKEEGLWIAAADMDGGV- 179

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++     + L++G+EG G+    ++    +  + M G + +LN S A  + LY     
Sbjct: 180 FYKQDLTGPLGLVVGSEGFGISRLVKQNCDFVVSMPMVGNVTSLNASVAGGILLYEVFRQ 239

Query: 280 F 280
            
Sbjct: 240 R 240


>gi|319891496|ref|YP_004148371.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161192|gb|ADV04735.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465333|gb|ADX77486.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           pseudintermedius ED99]
          Length = 249

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 121/242 (50%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           ++  + G H V  A+ +    I ++L  +    +   +           V+TVP   +D+
Sbjct: 2   DSEIIVGRHAVREAVISGH-TINKILIQEGIKKQQIEEILKVAKSSKLVVQTVPKSKLDQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP     L+              +++LD + DPHN+G+ILR+A A
Sbjct: 61  LA--NAPHQGVAAFVAPYEYADLNQFLAEQAQKEGLSTVLILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGII  KR S S +  +AK+++GA++H+P IR++NL+  +  +   G+   G  + +
Sbjct: 119 TGVDGIIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLSQTMDVLKDKGYWIAGAEASN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                Q   +  +A+++G+EG+G+  + +E       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRQMQADMPLAIVIGSEGQGMSRRVKEKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 FR 240


>gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 249

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +  + G + V  AL    P +K+  L +             +     V+ V  + +D++ 
Sbjct: 2   SDIIAGRNAVREALRGTRPIQKVLVLESGHGGSFEEILSLCVKRHVAVERVNKERLDRL- 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  HQG+    + +    LD V            L++LD + DP NIGA++RSA A  
Sbjct: 61  SPDVRHQGVVAVGSAVAFRDLDEVLEGVAQKGKVPFLLLLDELQDPQNIGALIRSANAAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  +R S    AV+AK ++GALEH P + ++NL   ++ +   GF  +G   D K 
Sbjct: 121 VDAVIVPQRRSAPLGAVVAKISAGALEHEPVVSVTNLVRTMKDLKKRGFWIVGADMDGKD 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                     + L++GAEGKG+    +E    +  + M G +++LN S A  + LY    
Sbjct: 181 LYFDADLTGPLVLVVGAEGKGVGRLVKENCDFLVRIPMLGQVQSLNASVAGGILLYEITR 240

Query: 279 HF 280
             
Sbjct: 241 QR 242


>gi|197941205|gb|ACH78322.1| putative tRNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 240

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 123/242 (50%), Gaps = 10/242 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K++  ++ ++  +YGVH V+   L N   K++     +        D        +    
Sbjct: 2   KAKEINETKD-IVYGVHAVTESLLANTGNKLYIQEDLRGKHVDHIKDLATSKKVSISWTK 60

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAIL 151
            + + ++    AVHQG  L  +      LD +       ++ LL++LD + DPHN G+IL
Sbjct: 61  KKALTEMTA-GAVHQGFVLRVSAFAYTELDELLELAQQEDNPLLLILDGLTDPHNFGSIL 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I  K  +   + V+AK+++GA+EH+P  R++NL+ AL ++ + GF   G
Sbjct: 120 RTADATGVCGVIIPKHRAVGVTPVVAKTSTGAVEHVPIARVTNLSQALDQLKANGFWVFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                  P  +   + K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+
Sbjct: 180 TDVTG-TPSYKWNTSGKLALIIGNEGKGISANIKKQVDEMITIPMMGHVQSLNASVAAAI 238

Query: 272 AL 273
            +
Sbjct: 239 LM 240


>gi|187478616|ref|YP_786640.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
 gi|115423202|emb|CAJ49733.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
          Length = 246

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++    +   +      +        V  VP + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTLIEQAERAGRRVHPVPVERLDGLA- 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +   HQG+            +   LD +     L++LD V DPHN+GA LR+A A     
Sbjct: 65  RGTRHQGVLAVADERQLAVGIDEVLDEIVGPAFLLILDGVTDPHNLGACLRTADAAGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   ++ + + A GA + +PYI ++NL   ++++   G   +G    +   + 
Sbjct: 125 VIAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTMRELKERGVWLVGTDDQASHDMH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY T    
Sbjct: 185 AIDARQPMAWVMGAEGEGMRRLTRETCDELVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|218516180|ref|ZP_03513020.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli 8C-3]
          Length = 252

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 127/238 (53%), Positives = 166/238 (69%), Gaps = 14/238 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +  ++        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRGAEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D   P   P + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDIE-PLGIPFEIVAPHEIDKVLGPEAIHQGVMLETRP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSA
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSA 194

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           SGALE IPYI+I+NL DAL ++H  GF TIGL S+   PLE     DK+AL+LG+EGK
Sbjct: 195 SGALELIPYIQITNLADALGELHKLGFSTIGLDSEGPAPLEGTFSGDKLALVLGSEGK 252


>gi|319763224|ref|YP_004127161.1| RNA methyltransferase, trmh family, group 3 [Alicycliphilus
           denitrificans BC]
 gi|317117785|gb|ADV00274.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
           denitrificans BC]
          Length = 248

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 114/244 (46%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106
            L+G H V   L    + I ++        AR+           V+ +      + K+ G
Sbjct: 6   ILFGFHAVGVRLKTAPQSIIEVYYEATRRDARMRQFLARAKEAGVRLIEADGLRLAKLAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A     +     L   LD +      + LL+VLD V DPHN+GA LR A   
Sbjct: 66  SHG-HQGVAARVQAVAQLHSLDDLLDQLEADGVANPLLLVLDGVTDPHNLGACLRVADGA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   SA +AK ASGA E +PY  ++NL   L ++       IG S D+ 
Sbjct: 125 GAHAVIAPKDHAVGISATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTSGDAD 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY   
Sbjct: 185 KTLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEAL 244

Query: 278 NHFA 281
               
Sbjct: 245 RQRG 248


>gi|125624835|ref|YP_001033318.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493643|emb|CAL98630.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071633|gb|ADJ61033.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 242

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
                +YG+H V+ ALN     + +L   ++   +      +        +   P   ++
Sbjct: 2   ENTDLIYGLHAVTEALN--GDLVNKLYVQEDLRGKNVEKIKELARIKKVNISWTPKTELN 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+  +  VHQG     +      L  +      +    +++LD + DPHN+G+I R+A A
Sbjct: 60  KLT-ENGVHQGFMARVSEFAYADLATLLPELAEKAEATILILDELTDPHNLGSIARTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II  K  +   +    K+++GAL+H+P +R++NL+  L K+ S GF   G   D 
Sbjct: 119 TGVDAIIIPKHRAVGITPTAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +     KIALI+G EG G+    ++    M  + M G +++LN S AA++ +Y  
Sbjct: 179 -TVYNKWNTKGKIALIIGNEGHGIGQNLKKQVDEMITIPMVGHVQSLNASVAASILMYEV 237

Query: 277 QNHF 280
             + 
Sbjct: 238 FRNR 241


>gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           proteolyticus MRP]
 gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           proteolyticus MRP]
          Length = 239

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 49  LFLYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + +YG + V+ AL      ++      ++A AR            V+  P   +D++ G 
Sbjct: 1   MLIYGRNPVTEALREGRVEEVLLAHGVEDAFARQLRALADEAGVRVRQAPRIELDQLAGT 60

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+  E   L   +  A+         + LL++LD + DP N GAI+RSA      
Sbjct: 61  TA-HQGVLAEAEELSWSSPQAIWDLAERRGEAPLLVLLDGITDPRNFGAIVRSAEVLGAH 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +R S   SAV+AK+A+GA  ++P +++ NL   ++++        G + ++ +PL
Sbjct: 120 GVVVEERRSAPLSAVVAKTAAGATAYLPVVQVKNLPRFIEELKDRNVWVYGAAGEAAQPL 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E+   +  +AL++G+EG GLR   +E    +  + + G +++LN S AA + +Y      
Sbjct: 180 ERTDLSGPVALVIGSEGDGLRRLVRERCDGLVSIPVRGQVQSLNASVAAGILIYEAARRR 239


>gi|223934291|ref|ZP_03626214.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           89/1591]
 gi|330833534|ref|YP_004402359.1| TrmH family RNA methyltransferase [Streptococcus suis ST3]
 gi|223897038|gb|EEF63476.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           89/1591]
 gi|329307757|gb|AEB82173.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus suis
           ST3]
          Length = 242

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             N  +YGVH V  +L  N   K++     +                 +   P +T+  +
Sbjct: 2   EHNDIVYGVHAVVESLEANTGNKLYIQDDLRGKNVEKIKALAAEKKVSISWTPKKTLSDM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + AVHQG  L  +      L  +       ++ L+++LD + DPHN G+ILR+A A  
Sbjct: 62  T-EGAVHQGFVLRVSEFAYADLSVILEKAEQEDNPLILILDGLTDPHNFGSILRTADATQ 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  K  +   + V+AK+++GA+ H+P  R++NL+  L K+   GF   G   +   
Sbjct: 121 VAGIIIPKHRAVGVTPVVAKTSTGAVAHVPIARVTNLSQTLDKLKEAGFWVFGTDMNG-T 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  +     K+ALI+G EGKG+    ++    M  + M G +++LN S AAAV +Y    
Sbjct: 180 PSHKWNTAGKLALIIGNEGKGISSNIKKQVDEMITIPMKGHVQSLNASVAAAVLMYEVFR 239


>gi|330825418|ref|YP_004388721.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
           K601]
 gi|329310790|gb|AEB85205.1| RNA methyltransferase, TrmH family, group 3 [Alicycliphilus
           denitrificans K601]
          Length = 248

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 114/244 (46%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106
            L+G H V   L    + I ++        AR+           V+ +      + K+ G
Sbjct: 6   ILFGFHAVGVRLKTAPQSIIEVYYEATRRDARMRQFLARAKEAGVRLIEADGLRLAKLAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A     +     L   LD +      + LL+VLD V DPHN+GA LR A   
Sbjct: 66  SHG-HQGVAARVQAVAQLHSLDDLLDQLEADGVANPLLLVLDGVTDPHNLGACLRVADGA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   SA +AK ASGA E +PY  ++NL   L ++       IG S D+ 
Sbjct: 125 GAHAVIAPKDHAVGISATVAKVASGAAETMPYFMVTNLARTLGELKERNIWVIGTSGDAD 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+AV LY   
Sbjct: 185 KTLYQVDLKGPVALVLGAEGPGMRQLTRKTCDELVSIPMKGAVESLNVSVASAVCLYEAL 244

Query: 278 NHFA 281
               
Sbjct: 245 RQRG 248


>gi|73663533|ref|YP_302314.1| SpoU rRNA methylase family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|90110724|sp|Q49V41|TRMHL_STAS1 RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|72496048|dbj|BAE19369.1| SpoU rRNA Methylase family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 249

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 15/243 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTID 102
           E + + G H V  A+ +    I ++L      K  +  +   AN  +   V++VP   ID
Sbjct: 2   EEIVIVGRHAVKEAIVSGH-TINKILIQDTIKKGQINEILKLAN-SNKIIVQSVPKSKID 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
            +   ++ HQG+A   AP      DA             +++LD + DPHN+G+ILR+A 
Sbjct: 60  GLS--DSPHQGVAAYIAPYEYADFDAFVAQQKAQDKLSTVLILDGLEDPHNLGSILRTAD 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG+I  KR S + +  +AK+++GA++HIP +R++NL + ++ +   G+  +G  ++
Sbjct: 118 ASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTNLANTIETLKDNGYWIVGTEAE 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +     +      + +++G+EG+G+    +E      ++ M G + +LN S AA++ +Y 
Sbjct: 178 NSTDYREMDAGMPLGIVIGSEGQGMSRLVKEKCDFYINIPMVGHVNSLNASVAASLMMYE 237

Query: 276 TQN 278
              
Sbjct: 238 VFR 240


>gi|126656120|ref|ZP_01727504.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
 gi|126622400|gb|EAZ93106.1| RNA methyltransferase TrmH, group 3 [Cyanothece sp. CCY0110]
          Length = 291

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 126/262 (48%), Gaps = 21/262 (8%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL------ 87
           +S +  S    + ++  +YG H+V AAL    R++ ++  T     RL +D         
Sbjct: 29  RSQSNTSAEPQETDDDLIYGRHSVLAALE-GDRQLNRIWIT----NRLHYDPRFHNLIQG 83

Query: 88  --PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVL 138
                  +  V  Q + +I    A HQG+A + AP     LD +        ++ ++++ 
Sbjct: 84  SKAKGAVIDEVSLQRLSQIT-NGANHQGVAAQVAPYTYHELDELITQAKANSDAPVIVIA 142

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+GAI+R+A A  C G+I  +R +   ++ ++K A+GALE  P  R+ NL+ A
Sbjct: 143 DGIADPHNLGAIIRTAEAMGCQGLIIPQRRAAGVTSTVSKVAAGALESFPVARVVNLSRA 202

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+ +   GF   G  ++  K L        I L++G+EG GL   TQ     +  + + G
Sbjct: 203 LETLKKEGFWIYGTVAEGGKRLHDFNFEGAIGLVIGSEGSGLSLLTQRCCDQLVSIPLEG 262

Query: 259 IIKALNVSNAAAVALYITQNHF 280
              +LN S AAA+ LY      
Sbjct: 263 KTPSLNASVAAAINLYEIYRQR 284


>gi|191639244|ref|YP_001988410.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
 gi|190713546|emb|CAQ67552.1| TRNA/rRNA methyltransferase [Lactobacillus casei BL23]
 gi|327383324|gb|AEA54800.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
           LC2W]
 gi|327386507|gb|AEA57981.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus casei
           BD-II]
          Length = 259

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 14/252 (5%)

Query: 37  NQKSRHTSQPE-NLFLYGVHTVSAALNNP-SRKIFQLLA---TKNALARLDWDANLPHPF 91
            +K + T++ + + F++G H V AAL    +  I +L      K+   +           
Sbjct: 2   AKKPQATTEHDPDEFIFGRHAVEAALKAGTAATINKLFVQTDLKSEPIQHLVGMAQKKKI 61

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            V T P Q +D ++  +  HQG+ L   P    TLD +             ++LD++ DP
Sbjct: 62  LVSTAPKQKLD-LMSDQGNHQGVLLAMTPYAYATLDDLFKNAADKGEDPFFLLLDNLEDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G+ILR+A A    G+I  K  +   ++ +AK ++GA+E++P  R++NL   ++ +  
Sbjct: 121 HNLGSILRTADASGVHGVIIPKHRAVGLTSAVAKVSTGAIEYVPVARVTNLAQTIKTLKE 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                 G + D  +   +       AL++G EGKG+ P   +   +M  + M G +++LN
Sbjct: 181 RSMWVFGTAMDG-QDYRKWDAKGSTALVIGNEGKGISPGVAKLMDAMIAIPMVGHVQSLN 239

Query: 265 VSNAAAVALYIT 276
            S AA + +Y  
Sbjct: 240 ASVAAGILMYQA 251


>gi|269958581|ref|YP_003328368.1| RNA methyltransferase [Anaplasma centrale str. Israel]
 gi|269848410|gb|ACZ49054.1| RNA methyltransferase [Anaplasma centrale str. Israel]
          Length = 262

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 13/254 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVP 97
            R  +  E +++ G H   +AL NP+R   +LL T   L +    A +        + V 
Sbjct: 2   GRTRNHEECMWICGRHVCISALQNPNRVCRELLVTGEFLKKHPEVARMAQNKGIRPRRVA 61

Query: 98  PQTIDKIVGKE-AVHQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHN 146
            + I KI G    VHQG+AL    L     D +R           +  +++LD V D +N
Sbjct: 62  AEEIGKIWGHGRTVHQGIALRVGKLFGRDGDKLRVEDIVSGSAFTASTVVLLDQVTDINN 121

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+RSA  F  D +I  + +SPSE+ ++ + +SGA + +P +R+ NL   ++ +   G
Sbjct: 122 VGAIVRSAACFDVDAVILPEHHSPSENCIITRVSSGAADLVPVVRVGNLVKTMEYLKQNG 181

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +   G+  D  K L +    ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVS
Sbjct: 182 YWCYGMDVDGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARINSLNVS 241

Query: 267 NAAAVALYITQNHF 280
           NAAA+ LY +    
Sbjct: 242 NAAAIVLYSSYLQL 255


>gi|313896352|ref|ZP_07829905.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975151|gb|EFR40613.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 266

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 10/240 (4%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            L G H ++ A+       +I        +  R   D    H   V  V    +D    +
Sbjct: 19  ILAGRHAITEAIKAGRGINRILIADGLHGSGVRELRDLARAHDITVDIVSRAKLDA-AAQ 77

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A H G+    AP+    ++ +           LL++LD + DPHN+GA+LR+A A    
Sbjct: 78  GARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIEDPHNLGALLRTADAAGVH 137

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ +   GF   G         
Sbjct: 138 GILLPRRHSVPLTETVARVSAGALEYVPVTRIGNIAQTIRALKEDGFWIAGADMAGSDTY 197

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      + L++G+EG+G+   T+E       L M G I +LN S A A+ +Y      
Sbjct: 198 DKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINSLNASVAGAILMYEAMRQR 257


>gi|254517454|ref|ZP_05129510.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226911203|gb|EEH96404.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 298

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 114/266 (42%), Gaps = 12/266 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
             +  + +++  +    N  +    +     + G + V   L +  R I  +  +   + 
Sbjct: 27  KRQFVKENKNGGEYIRENVSNASELETREDLIIGRNAVMEVLKSD-RTIECVYISNGNME 85

Query: 80  ---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132
              ++  +        +K V  + +D +      HQG+     P     +  + N     
Sbjct: 86  GSIKVIINIAREKGLVLKEVDRKKLDAM-SNGTNHQGVIALVTPFKYCQIADMLNDAKEK 144

Query: 133 ---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                ++VLD + DPHN+G+I+R+A      GII  KR +   ++ + K + GA+EH+  
Sbjct: 145 GEDPFIIVLDEIEDPHNLGSIIRTAELCGVHGIIIPKRRNVGITSTVYKCSVGAIEHMKI 204

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +++N+  A+ ++   G    G     ++   Q   N   A+++G+EG+G+   T +   
Sbjct: 205 AKVTNINSAIDELKESGLWVYGADIAGEEYSYQVDFNGPCAMVIGSEGRGISKLTLKKCD 264

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYI 275
            +  + M G I +LN S A  + +Y 
Sbjct: 265 KLVKIPMVGKINSLNASVAGGIMMYE 290


>gi|52783308|sp|Q83CW6|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
          Length = 250

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107
           +YG+H VS  L+   ++I +L   +N    RL           VK +      ++ +  +
Sbjct: 7   IYGIHAVSGVLDAAPQRIVKLYVQENRDDQRLQSLVEKAKALGVKVILLSRTELNTLSNE 66

Query: 108 EAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  +   +       L   L       LL++LD V DPHN+GA LRSA AF   
Sbjct: 67  K--HQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACLRSANAFGVR 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   + V+ K A GA E  P+IR++NL+  +  +   G   +G + +++  +
Sbjct: 125 AVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVGTAVEAETLI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IA++LG+EG GLR  T+E    +A + + G +++LNVS A  + LY  Q   
Sbjct: 185 QEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIPLRGSVESLNVSVACGICLYEVQRQR 244


>gi|153834959|ref|ZP_01987626.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
 gi|148868589|gb|EDL67677.1| RNA methyltransferase, TrmH family, group 3 [Vibrio harveyi HY01]
          Length = 247

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+            + +        S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-NGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
           7425]
          Length = 387

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 123/252 (48%), Gaps = 12/252 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKT 95
           ++ ++  ++  +YG HT+ AAL +  R++ ++        +                +  
Sbjct: 118 TKESTDGDSDLIYGRHTLLAALES-ERQLNRIWVVNQLRYDPRFHSLLLQAKAAGVVIDE 176

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGA 149
           V    +D+I    A HQG+A + AP     LD +  +       +L+  D + DPHN+GA
Sbjct: 177 VDYLRLDQITA-HAKHQGIAAQVAPYSYLELDTLLENIQGLDHPVLLAADGITDPHNLGA 235

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A    G++  +R +   ++ +AK A+GALEH    R+ NL  AL+++ + GF  
Sbjct: 236 IIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVVNLNQALEQLKAAGFWI 295

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G+++ + KP+     +  + L++GAEG GL    Q     +  + + G   +LN S A 
Sbjct: 296 YGMAATAAKPIYSVEFSGPVVLVVGAEGTGLSLLAQRYCDQLVSIPLLGKTPSLNASVAT 355

Query: 270 AVALYITQNHFA 281
            +ALY      +
Sbjct: 356 GMALYEIFRQRS 367


>gi|257081390|ref|ZP_05575751.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|256989420|gb|EEU76722.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
          Length = 285

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 117/281 (41%), Gaps = 12/281 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E  + F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120

Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+ +         +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++NL  ++  +    F   G          +      IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMYGM-DYRRWNTQGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +G+     +    +  + M G +++LN   AA + +Y    
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280


>gi|30260282|ref|NP_842659.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|42779172|ref|NP_976419.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|47525346|ref|YP_016695.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47569826|ref|ZP_00240496.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
 gi|49183125|ref|YP_026377.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|49476710|ref|YP_034444.1| tRNA/rRNA methyltransferase SpoU [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52145126|ref|YP_081703.1| TrmH family tRNA methyltransferase [Bacillus cereus E33L]
 gi|65317552|ref|ZP_00390511.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
 gi|118475862|ref|YP_893013.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|165873145|ref|ZP_02217761.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0488]
 gi|167635112|ref|ZP_02393429.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0442]
 gi|167641947|ref|ZP_02400182.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0193]
 gi|170689565|ref|ZP_02880751.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0465]
 gi|170707589|ref|ZP_02898042.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0389]
 gi|177655588|ref|ZP_02936969.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0174]
 gi|190568999|ref|ZP_03021900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036983|ref|ZP_03104350.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
 gi|217957667|ref|YP_002336211.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
 gi|218901294|ref|YP_002449128.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
 gi|222093862|ref|YP_002527912.1| tRNA/rRNA methyltransferase (spou); trmh family [Bacillus cereus
           Q1]
 gi|225862144|ref|YP_002747522.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB102]
 gi|227812765|ref|YP_002812774.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CDC 684]
 gi|229604658|ref|YP_002864743.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0248]
 gi|254684405|ref|ZP_05148265.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CNEVA-9066]
 gi|254724232|ref|ZP_05186017.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A1055]
 gi|254733754|ref|ZP_05191469.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Western North America USA6153]
 gi|254744606|ref|ZP_05202285.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Kruger B]
 gi|254756310|ref|ZP_05208339.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Vollum]
 gi|254758388|ref|ZP_05210415.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Australia 94]
 gi|301051829|ref|YP_003790040.1| tRNA/rRNA methyltransferase [Bacillus anthracis CI]
 gi|30253603|gb|AAP24145.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Ames]
 gi|42735087|gb|AAS39027.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus ATCC
           10987]
 gi|47500494|gb|AAT29170.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47553519|gb|EAL11900.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9241]
 gi|49177052|gb|AAT52428.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. Sterne]
 gi|49328266|gb|AAT58912.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51978595|gb|AAU20145.1| tRNA/rRNA SpoU-like methyltransferase; probable TrmH family
           [Bacillus cereus E33L]
 gi|118415087|gb|ABK83506.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|164711125|gb|EDR16686.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0488]
 gi|167510078|gb|EDR85489.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0193]
 gi|167529586|gb|EDR92336.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0442]
 gi|170127585|gb|EDS96459.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0389]
 gi|170666478|gb|EDT17255.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0465]
 gi|172080052|gb|EDT65150.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0174]
 gi|190559923|gb|EDV13907.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195990406|gb|EDX54407.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus W]
 gi|217065144|gb|ACJ79394.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH187]
 gi|218539078|gb|ACK91476.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus AH820]
 gi|221237910|gb|ACM10620.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           cereus Q1]
 gi|225787673|gb|ACO27890.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB102]
 gi|227007212|gb|ACP16955.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. CDC 684]
 gi|229269066|gb|ACQ50703.1| RNA methyltransferase, TrmH family, group 3 [Bacillus anthracis
           str. A0248]
 gi|300373998|gb|ADK02902.1| tRNA/rRNA methyltransferase (SpoU); probable TrmH family [Bacillus
           cereus biovar anthracis str. CI]
 gi|324324081|gb|ADY19341.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 247

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+ +             ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|257432651|ref|ZP_05609011.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257282066|gb|EEV12201.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
          Length = 248

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKEQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|88704452|ref|ZP_01102166.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
           litoralis KT71]
 gi|88701503|gb|EAQ98608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Congregibacter
           litoralis KT71]
          Length = 257

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 17/247 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105
            + +G+H V   L    + + +L   K       +           PV  +P   +D++V
Sbjct: 4   DYAFGLHAVEELLRRQPKTVRRLWVQKGRDDGRVQALLALATAADTPVSRLPRGKLDELV 63

Query: 106 GKEAVHQGLALETAP----------LLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRS 153
                HQG+  E               +    AV  +   L++VLD V DPHN+GA LRS
Sbjct: 64  P--GRHQGVVAELGDNTAGQSDLRWSEAQLEQAVSGNPRALVLVLDGVTDPHNLGACLRS 121

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     ++  K  +   +AV+ K A GA E +P +R++NL  +L  + + G    G +
Sbjct: 122 ADAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDMLKAAGVWIYGTA 181

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ + L        +AL++GAEG G+R  T+E    + +L M G + +LNVS A  V L
Sbjct: 182 GEASESLYSSDLAGPLALVMGAEGAGMRRLTRERCDFLVNLPMAGAVSSLNVSVATGVCL 241

Query: 274 YITQNHF 280
           +  +   
Sbjct: 242 FEIRRQR 248


>gi|239815199|ref|YP_002944109.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           S110]
 gi|239801776|gb|ACS18843.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           S110]
          Length = 248

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 12/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106
            ++G H V   +    + + +++  T    AR+           V+ V      + K+ G
Sbjct: 6   VIFGFHAVGVRIKTAPKSVLEVMFDTSRRDARMKQFIARAQEAGVRLVEADGLRLAKLSG 65

Query: 107 KEAVHQGLALETAPLLS--------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               HQG+     P+            L+      LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHG-HQGVVARVEPIAQVRSLDELLEGLEEAGTVPLLLVLDGVTDPHNLGACLRVADGAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       +G S D+  
Sbjct: 125 AHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERSIWCVGTSDDAPG 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +AL+LGAEG+G+R  T++T   +  + M G +++LNVS A+ V LY    
Sbjct: 185 TLYQSDLKRPLALVLGAEGEGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMR 244

Query: 279 HFA 281
             +
Sbjct: 245 QRS 247


>gi|221066327|ref|ZP_03542432.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           KF-1]
 gi|220711350|gb|EED66718.1| RNA methyltransferase, TrmH family, group 3 [Comamonas testosteroni
           KF-1]
          Length = 256

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 13/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       I K+VG
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEVYFEASRRDARMRQFLERAKEAGVRLIEADALRIAKLVG 65

Query: 107 KEAVHQGLALETAPLLSPTLDAVR---------NSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A     +                   + LL+VLD V DPHN+GA LR A   
Sbjct: 66  SHG-HQGVAARVEEVKDTRTLDELLDDLEDEGVKAPLLLVLDGVTDPHNLGACLRVADGA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L+++   G   IG S D+ 
Sbjct: 125 GVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLKELKERGIWIIGTSGDAD 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L Q       AL+LGAEG G+R  T++T  ++  + M G +++LNVS A+ V LY   
Sbjct: 185 RHLYQMDLTGPTALVLGAEGDGMRQLTRKTCDALVSIPMQGAVESLNVSVASGVCLYEAL 244

Query: 278 NHF 280
              
Sbjct: 245 RQR 247


>gi|284047633|ref|YP_003397972.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
           fermentans DSM 20731]
 gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
           fermentans DSM 20731]
          Length = 250

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
             F+ G + V  AL +  R   ++L  + +         +       PV+ V  + +D++
Sbjct: 2   EEFIVGRNAVREALRS-RRPFNKVLVQEGSHGGSLSEILELAQEQKIPVEKVSREVLDRL 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+A + AP+    LD V           LL++LD + DP N+GA++R+A A 
Sbjct: 61  AD-GVRHQGVAAQGAPVAFQDLDTVLARVESRGEVPLLLLLDELQDPQNVGALIRTANAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++  +R S   +AV+AK ++GA+E++P I+I N+   ++++   GF   G   D +
Sbjct: 120 GVHGVLLPQRRSCPLNAVVAKISAGAIEYVPVIQIGNIPQTMKQLKKRGFWIAGADMDGE 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      + L++GAEGKGL    +E    +  + M G + +LN S A  + LY   
Sbjct: 180 DQYFDANLTGPMVLVVGAEGKGLGRLVKENCDFIVRIPMLGQVSSLNASVAGGILLYDIV 239

Query: 278 NHF 280
              
Sbjct: 240 RQR 242


>gi|88810597|ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
 gi|88792227|gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
          Length = 256

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTID 102
            +N  ++G+H+V AA+      + ++   + A +   +           PV  V  + +D
Sbjct: 2   TQNRIIHGLHSVRAAVRYDPTHVVEVWLDRQARSGRWQALRRQLEALACPVHLVDRRQLD 61

Query: 103 KIVGKEAVHQGLALETA---PLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAV 155
           ++   + VHQG+A+  A   P     L+A+ +      LL+VLD V DPHN+GA LR+A 
Sbjct: 62  RLTSGQ-VHQGVAIRYAGQPPRAEHELEALLSELGPDPLLLVLDQVQDPHNLGACLRTAA 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                 +IT +  +   +  + K+A+GA++HIP  +++NL   L+K+   G   IG +  
Sbjct: 121 GAGVQAVITPRDRAVGLTPTVYKAATGAVQHIPLFQVTNLARTLRKLREAGMWLIGAAEQ 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +   L +   +  + L++GAE  GLR  T+     +  + M G I +LNVS A  V LY 
Sbjct: 181 ADVTLYEVDLSGPLVLVMGAEEAGLRRLTRACCDRLIRIPMLGAIDSLNVSVATGVVLYE 240

Query: 276 TQNHF 280
                
Sbjct: 241 VVRQR 245


>gi|163741609|ref|ZP_02149000.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
           gallaeciensis 2.10]
 gi|161385343|gb|EDQ09721.1| RNA methyltransferase, TrmH family, group 3 [Phaeobacter
           gallaeciensis 2.10]
          Length = 290

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 98/246 (39%), Positives = 146/246 (59%), Gaps = 7/246 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+  +  E ++L+G+H V  AL NP R+  +L+ T+NA A+L  DA        + +
Sbjct: 43  KEQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVETEVI 101

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  + K++VHQG ALE  PL    LD          +++LD V DPHN+GAILRS
Sbjct: 102 DPRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRS 161

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+  S  E+  LAK+ASGALE  PY+R+ NL D + ++   GF  +GL 
Sbjct: 162 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 221

Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E  +   K D +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 222 GEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 281

Query: 271 VALYIT 276
           +ALY +
Sbjct: 282 IALYAS 287


>gi|29374705|ref|NP_813857.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227555729|ref|ZP_03985776.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           HH22]
 gi|29342163|gb|AAO79929.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
 gi|227175134|gb|EEI56106.1| TrmH family tRNA/rRNA methyltransferase [Enterococcus faecalis
           HH22]
 gi|315573947|gb|EFU86138.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0309B]
 gi|315581898|gb|EFU94089.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0309A]
          Length = 282

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/279 (25%), Positives = 116/279 (41%), Gaps = 11/279 (3%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-R 66
           K+EK    K       +R+     +  +           +N F++G H    AL      
Sbjct: 2   KNEKSRPFKKGKKRSDKRSKERNPRPATAGADGTSEELADN-FVFGFHATVEALQQGRGN 60

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           K+F     +         A      PVK VP   +D +     VHQG+ L        TL
Sbjct: 61  KLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYLTL 119

Query: 127 DAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           + +         +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + K+
Sbjct: 120 EELLEQTKEKTATPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVTKA 179

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ++GA+EHIP  R++NL  ++  +    F   G          +      IALI+G EG+G
Sbjct: 180 STGAVEHIPVARVTNLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEGRG 238

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +     +    +  + M G +++LN   AA + +Y    
Sbjct: 239 MSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 277


>gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           6_1_27]
 gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           6_1_27]
          Length = 243

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V  AL +  R I ++L +++ +     D           V+  P + ++K   
Sbjct: 4   YIVGRNAVKEALKSG-RSIQRILVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNK-YD 61

Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+    + +    L     +      LL++ D V DPHN+GAI+R+A       
Sbjct: 62  LEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECVGATA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  KR++   +A +AK+++GA+E IP +++ N+   ++++   GF  +G   +  + L 
Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +        +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|307274059|ref|ZP_07555269.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0855]
 gi|306509367|gb|EFM78427.1| RNA methyltransferase, TrmH family, group 3 [Enterococcus faecalis
           TX0855]
          Length = 285

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/281 (25%), Positives = 116/281 (41%), Gaps = 12/281 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPS 65
           K+EK    K       R + R  ++           +  E  + F++G H    AL    
Sbjct: 2   KNEKSRPFKKGKKRPERSDKRSKERNPRPATAGADGTSEELADNFVFGFHATVEALQQGR 61

Query: 66  -RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             K+F     +         A      PVK VP   +D +     VHQG+ L        
Sbjct: 62  GNKLFLQEDARGEKIEQLKQAAKEQAVPVKWVPKAKLDTM-SDHGVHQGMVLAITAYQYL 120

Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           TL+ +         +   ++LD + DPHN G+ILR+A A   DGII  K  +   +  + 
Sbjct: 121 TLEELLEQTKEKTETPFFLILDSLEDPHNFGSILRTADATGVDGIIIPKHRAVGITPTVT 180

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K+++GA+EHIP  R++ L  ++  +    F   G          +      IALI+G EG
Sbjct: 181 KASTGAVEHIPVARVTKLAQSIATLKENQFWIFGTDMSG-TDYRRWNTQGAIALIIGNEG 239

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +G+     +    +  + M G +++LN   AA + +Y    
Sbjct: 240 RGMSQGLHKEVDELLTIPMTGHVQSLNAGVAAGLLMYEVYR 280


>gi|84687814|ref|ZP_01015684.1| tRNA/rRNA metyltransferase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664186|gb|EAQ10680.1| tRNA/rRNA metyltransferase [Rhodobacterales bacterium HTCC2654]
          Length = 267

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/250 (38%), Positives = 140/250 (56%), Gaps = 9/250 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            +KS+  +  E ++L+G+H V  AL NP R   +L+ TKNA  +L  DA        +  
Sbjct: 11  KEKSKRAAAAETVWLFGLHAVRDALVNPRRDKLRLVVTKNAADKLA-DAIATGGIEPEVA 69

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151
            P+     +   +VHQG ALE  PL    L+ V         ++++LD V DPHN+GAIL
Sbjct: 70  DPRKFPVPLDPGSVHQGAALEVKPLDWGRLEEVCMGDGDRPPVVVLLDRVTDPHNVGAIL 129

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I TK +S  E+  LAK+ASGALE  PY+R++NL DA+  +   G+  +G
Sbjct: 130 RSAEVFGARAVIGTKHHSAPETGALAKTASGALERQPYLRVTNLADAMGTLKDMGYTVLG 189

Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L+ ++   +      +    +AL++GAEG GLR KT+ET  ++  +       +LNVSNA
Sbjct: 190 LAGEADDDIADALSPLSGHAVALVMGAEGPGLRQKTRETCDALVKIPFAAEFGSLNVSNA 249

Query: 269 AAVALYITQN 278
           AAV+LY    
Sbjct: 250 AAVSLYAVTR 259


>gi|258645874|ref|ZP_05733343.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
           15470]
 gi|260403247|gb|EEW96794.1| RNA methyltransferase, TrmH family, group 3 [Dialister invisus DSM
           15470]
          Length = 282

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 13/277 (4%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
              K   + K R   +  +  + F+   R   + E  F+ G ++V  +L     ++ ++ 
Sbjct: 11  KERKCDPHEKRRSGDQSIRGERGFSSGGR-RKEEETCFIGGRNSVLESLRAG--QVKKVF 67

Query: 73  A-TKNALARLDWDANLPHPFPVKTVPPQT--IDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             +     RL   A       V  +  +   +D++  +   HQG+A    P     L+ V
Sbjct: 68  IKSGKKDGRLLALAEEAERLGVAAIETEERTLDRLT-EGVRHQGVAASLKPYAYADLEEV 126

Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                R   LL++LD V D  NIGAI+R+A       ++  K  S   +A   K+ASGA 
Sbjct: 127 LSSCERKDPLLILLDGVEDVRNIGAIVRTAECAGAAAVLLPKHRSSPVTAAAMKTASGAF 186

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            ++P  +I N+   L+K+   GF  +G   D    L Q      + +++GAEGKG+ P T
Sbjct: 187 AYLPVCQIGNIRQTLEKLKERGFWAVGADMDGGD-LYQADLKGPLVIVMGAEGKGISPLT 245

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +        + M G + +LNVS AAA+ +Y       
Sbjct: 246 KRMCDFCVRIPMRGKVSSLNVSVAAALLMYEAVRQRN 282


>gi|186476454|ref|YP_001857924.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184192913|gb|ACC70878.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia phymatum
           STM815]
          Length = 247

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKI--VG 106
            LYG H V+A L +    + ++   +     R++    +     V+ +      ++  + 
Sbjct: 6   VLYGFHAVTARLRHDPSSVEEIYYDQTRRDRRMNEFLAVAKEAGVRLIAADE-TRLWGLA 64

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+         A  L+  LD ++   LL+VLD + DPHN+GA LR A A     
Sbjct: 65  HTERHQGVVARAGDVPLAQNLAELLDGIQGPPLLLVLDGITDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGIWVVGTAGEATASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      A
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMQIPMAGSVESLNVSVASGVCLFEAVRQRA 244


>gi|163738679|ref|ZP_02146093.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
           BS107]
 gi|161388007|gb|EDQ12362.1| RNA methyltransferase TrmH, group 3 [Phaeobacter gallaeciensis
           BS107]
          Length = 290

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 98/246 (39%), Positives = 146/246 (59%), Gaps = 7/246 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+  +  E ++L+G+H V  AL NP R+  +L+ T+NA A+L  DA        + +
Sbjct: 43  KEQSKKAASAETVWLFGLHAVRDALLNPKREKLRLMVTQNAEAKLA-DAIAQSGVEAEVI 101

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  + K++VHQG ALE  PL    LD          +++LD V DPHN+GAILRS
Sbjct: 102 DPRKFNPPIDKQSVHQGAALEVKPLNWGGLDENCIGAEVPRVLLLDRVTDPHNVGAILRS 161

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+  S  E+  LAK+ASGALE  PY+R+ NL D + ++   GF  +GL 
Sbjct: 162 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 221

Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E  +   K D +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 222 GEAEQTIEAVLDGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 281

Query: 271 VALYIT 276
           +ALY +
Sbjct: 282 IALYAS 287


>gi|160916266|ref|ZP_02078473.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
 gi|158431990|gb|EDP10279.1| hypothetical protein EUBDOL_02293 [Eubacterium dolichum DSM 3991]
          Length = 241

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 8/238 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V A L    +K+++++ +     +           P K    + +D +    +
Sbjct: 4   YVYGKNVVKALL-ADKKKVYEIILSDGFRDKELEQEIRKRKIPCKVNSRKKMDTMFS-GS 61

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+A +     + T++ +        + L ++LD + DPHN+GAILR+      DG+I
Sbjct: 62  NHQGIAAKIDDYKTYTIEELVAGVPKGKTPLFVMLDELEDPHNLGAILRTCDCVGVDGVI 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K      +  +AK ++GA++ +    ++NL   L+ +   GF   G   D+ +   Q 
Sbjct: 122 IGKHRGVKLTPTVAKVSTGAIDTVKVAVVTNLAQTLKGLKKEGFWVAGADFDNSQDYRQA 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +  + L++G+EG G+ P  ++       L M G + +LN S A AV LY       
Sbjct: 182 SYDMPLVLVVGSEGFGISPLVKKNCDFFVRLPMEGSVSSLNASVACAVLLYQIYAQRN 239


>gi|289551668|ref|YP_003472572.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           lugdunensis HKU09-01]
 gi|315659128|ref|ZP_07911993.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289181199|gb|ADC88444.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus
           lugdunensis HKU09-01]
 gi|315495852|gb|EFU84182.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 248

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 121/242 (50%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E+  + G H V  A+      I ++L  +    +   +           V+TVP   +D 
Sbjct: 2   EDHIIVGRHAVKEAIVTGH-TINKILIQEGIKKQQIKEILTNAKTQKLVVQTVPKSKLDH 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   +A HQG+A   AP      +          +   +++LD + DPHN+G+ILR+A A
Sbjct: 61  MS--DAPHQGVAALIAPYEYADFNHFIKMQQQKESLSTVIILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGII  KR S + + ++AK+++GA++HIP +R++NL+  +  + + GF  +G  +D+
Sbjct: 119 TGVDGIIIPKRRSVALTQIVAKASTGAIQHIPVMRVTNLSQTIDDLKAHGFWIVGTEADN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+    ++       + M G + +LN S AA + +Y  
Sbjct: 179 ATDYRDMAADMSLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAAGLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 YR 240


>gi|260663232|ref|ZP_05864124.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552424|gb|EEX25475.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           fermentum 28-3-CHN]
          Length = 251

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 15/244 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVP 97
            T++  + F+ G H   AAL +    I ++   K    +A+A+L   A   H   +  VP
Sbjct: 2   KTNEENSEFIIGRHPAMAALKSDQE-INKVFIQKGLKTDAIAQLVKSAKERHLV-ISNVP 59

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
              +D++   +  HQG+AL  A     T+D +             ++LD + DPHN+G+I
Sbjct: 60  KTKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A    GII  KR S   ++V+AK+++GA+EH+P  R++NL    +++   G    
Sbjct: 119 LRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLF 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G          +      +AL++G EGKG+ P  ++T   M  + M G +++LN S AA+
Sbjct: 179 GTDMQG-TDYRRWDAKGAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAAS 237

Query: 271 VALY 274
           + +Y
Sbjct: 238 LLIY 241


>gi|320530261|ref|ZP_08031330.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
           F0399]
 gi|320137476|gb|EFW29389.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas artemidis
           F0399]
          Length = 265

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 11/248 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQ 99
           H+  P    L G H ++ A+    R I ++L         R   D    H   V  V   
Sbjct: 11  HSVDPPAGILAGRHAITEAIK-AGRGINRILIADGMHGGVRELRDLARAHDITVDIVSRA 69

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            +D    + A H G+    AP+    ++ +           LL++LD + DPHN+GA+LR
Sbjct: 70  KLDA-AAEGARHGGMLAYAAPVSYVPVEEIISSVRARGEEPLLLLLDGIEDPHNLGALLR 128

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ +   GF   G 
Sbjct: 129 TADAAGVHGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTIRALKEDGFWIAGA 188

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                   ++      + L++G+EG+G+   T+E       L M G I +LN S A A+ 
Sbjct: 189 DMAGSDTYDKANLTGALVLVIGSEGRGMSRLTRELCDFTVRLPMRGKINSLNASVAGAIL 248

Query: 273 LYITQNHF 280
           +Y      
Sbjct: 249 MYEAMRQR 256


>gi|156972464|ref|YP_001443371.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524058|gb|ABU69144.1| hypothetical protein VIBHAR_00084 [Vibrio harveyi ATCC BAA-1116]
          Length = 247

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGLHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+            + +        S LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-NGANHQGIIARVKAAKQLNENDIDGILAQHESPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|161524858|ref|YP_001579870.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189350392|ref|YP_001946020.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221197831|ref|ZP_03570877.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2M]
 gi|221204611|ref|ZP_03577628.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2]
 gi|221213042|ref|ZP_03586018.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD1]
 gi|160342287|gb|ABX15373.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans ATCC 17616]
 gi|189334414|dbj|BAG43484.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221167255|gb|EED99725.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD1]
 gi|221175468|gb|EEE07898.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2]
 gi|221181763|gb|EEE14164.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           multivorans CGD2M]
          Length = 247

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDAATVVEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     LS  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY   +   
Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRR 244

Query: 281 AK 282
           AK
Sbjct: 245 AK 246


>gi|15673854|ref|NP_268029.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724905|gb|AAK05970.1|AE006417_2 tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407365|gb|ADZ64436.1| tRNA-guanosine methyltransferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 242

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
                +YG+H V+ ALN     + +L   ++   +      +        +   P   ++
Sbjct: 2   ENTDLIYGLHAVTEALN--GDLVNKLYVQEDLRGKNVEKIKELARLKKVNISWTPKTELN 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+  +  VHQG     +      L+ +      ++   +++LD + DPHN+G+I R+A A
Sbjct: 60  KLT-ENGVHQGFMARVSEFAYADLEKILPALAEKSDATILILDELTDPHNLGSIARTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II  K  +   ++   K+++GAL+H+P +R++NL+  L K+ +  F   G   D 
Sbjct: 119 TGVDAIIIPKHRAVGITSTAVKASTGALQHVPIVRVTNLSQTLDKLKAANFWVFGTDMDG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +     K+ALI+G EG G+    ++    M  + M G +++LN S AA++ +Y  
Sbjct: 179 -TVYSKWNTKGKVALIIGNEGHGIGQNLKKQVDEMITIPMTGHVQSLNASVAASILMYEI 237

Query: 277 QNHF 280
             + 
Sbjct: 238 FRNR 241


>gi|293400417|ref|ZP_06644563.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306817|gb|EFE48060.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 240

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V   L    +KI+++L  +             H    K +P + +D ++  + 
Sbjct: 4   YVYGKNVVKQLLQ-EDKKIYEILMAEGMRDTALEKLIKEHKITCKILPRKKMDGML--QG 60

Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+A +     +  L  +  S       L ++LD + DPHN+GAILR+      DG+I
Sbjct: 61  NHQGIAAKIDDYKTYELLELLESIPKGKMPLFVMLDGLEDPHNLGAILRTCDCVGVDGVI 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +  +AK ++GA++ +    ++NL  +++ +   GF  +G   ++ +   + 
Sbjct: 121 IGKHRNVGLTPTVAKVSTGAIDTVKVAMVTNLAQSIKYLKKQGFWIVGTDFENSRDYREG 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  + +++G+EG G+    ++       L M G++ +LN S A  + LY   N  
Sbjct: 181 QYDVPLVIVVGSEGFGISSLVKKNCDYCVRLPMEGVVTSLNASVACGILLYEIYNQR 237


>gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 250

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++ G ++V  AL    RKI ++    +    AL  +   A   H   V+    + +D++V
Sbjct: 6   WITGRNSVLEALR-AGRKIEKIYIASSPHGAALQEIMSLAKAAH-IVVEERDRKALDRLV 63

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  HQG+A +  P+   + +               ++LD + D HN+GAI+R+A    
Sbjct: 64  -PQQRHQGVAAQAQPIAMTSWETCAATAARRGEVPFFVLLDGIEDVHNMGAIIRTAECAG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              ++  KR+S   +  + K+++GA+E++P + I N T  L+ +   GF  IG   + + 
Sbjct: 123 AHAVLIPKRHSAPINETVGKTSAGAVEYMPLVSIGNTTQVLKALKKAGFWIIGADMNGEA 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                     + L++G EGKG+    +E    +  + M G + +LN S AAA+ +Y T  
Sbjct: 183 DYFHTDMTMPLVLVIGNEGKGISRLVKENCDILVQIPMFGHVNSLNASVAAALLIYETVR 242

Query: 279 HFA 281
              
Sbjct: 243 QRG 245


>gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
 gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
          Length = 652

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 123/248 (49%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPP 98
           ++ P +  ++G H   AAL +  R I ++  T    +   +   L         V+ V  
Sbjct: 284 STPPADDLIWGRHASQAALESG-RPIHRIWCTPEMRSAPKFLQLLREAKTSGVLVEEVTW 342

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
             + ++ G  +VHQG+AL+TA   +  L A+           LL+ LD + DPHN+GA++
Sbjct: 343 ARLAQVTG-GSVHQGIALQTAAADTLDLSALIEGCSELGEPPLLLALDGITDPHNLGAVV 401

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A    G++  +R S   +   AK A+GA+EH+P  R+ NL  +L+K+   G++ IG
Sbjct: 402 RSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNRSLEKLKDSGYRVIG 461

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L+++    L        + L+ G+E +GL   T+     +  + + GI  +LN S A A+
Sbjct: 462 LAAEGDVTLMDVDLEGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLRGITPSLNASVATAL 521

Query: 272 ALYITQNH 279
            +Y     
Sbjct: 522 CVYEVARR 529


>gi|161869843|ref|YP_001599012.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           meningitidis 053442]
 gi|161595396|gb|ABX73056.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Neisseria
           meningitidis 053442]
          Length = 234

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 63  NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              + I +L   +   +A  R   +        V  V    +D I  K A HQG+A    
Sbjct: 3   QNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFVDTTRLDAI-SKGARHQGVAGFID 61

Query: 120 PL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                  L   L+ +    LL++LD + DPHN+GA LR+A A     +I  K  S   +A
Sbjct: 62  ASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNA 121

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            ++K A GA E +PYI ++NL   L+++  +G   IG     +  L      D+ A ++G
Sbjct: 122 TVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMSGESDLYHCNLPDRAAWVMG 181

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 182 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227


>gi|319786532|ref|YP_004146007.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465044|gb|ADV26776.1| RNA methyltransferase, TrmH family, group 3 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 248

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 11/246 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102
            +N ++ GV+ V++A+ N +  + ++L   +A   RL             V+ V  Q +D
Sbjct: 3   KQNQWVVGVNAVASAIENDAEHVREVLVDSSARNPRLVEIEEQARRYGIEVRKVATQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            I G    HQG+A   A         L+  ++A     LL+VLD V DPHN+GA LRSA+
Sbjct: 63  GI-GGNVRHQGVAARYAAAKTWGEGELAGLVEAADGKALLLVLDGVQDPHNLGACLRSAL 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  +  S   +A + K+++GA + +P ++++NL   L+++   G    GL+ +
Sbjct: 122 AAGATAVVIPRDKSAPVNATVRKTSAGAADRLPVVQVTNLARTLRELQKQGVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + L        +AL+LG E  GLR  T+ET   +  + MPG +++LNVS AA V L+ 
Sbjct: 182 VDETLYGVDLKGNVALVLGGEADGLRRLTRETCDGLVRIPMPGDVESLNVSVAAGVCLFE 241

Query: 276 TQNHFA 281
                 
Sbjct: 242 AVRQRG 247


>gi|323141397|ref|ZP_08076288.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414146|gb|EFY04974.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
           sp. YIT 12067]
          Length = 248

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 15/248 (6%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQT 100
           ++  N  + G + VS AL +  R I ++L  + A    L     L      PV+TV  + 
Sbjct: 2   AEQNNDLIAGRNAVSEALRS-QRSINKILLQEGAHGGSLGEIIALAKQKGVPVETVKAEK 60

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +DK+  K   HQG+A   AP+   TLD V            +++LD + DP N+GA++RS
Sbjct: 61  LDKLA-KGLRHQGVAALAAPIAFRTLDDVFACAAEKNEEPFILLLDELQDPQNVGALIRS 119

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G++  +R S   +AV+AK ++GA+E++P ++I N+   ++++   G   +G  
Sbjct: 120 ADAAGVHGVLMPRRRSCPLNAVVAKISAGAVEYVPVVQIGNIAQTIEELKQRGCWVVGAD 179

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D          +  I L++GAEG+GL    ++    +  + M G + +LN S A AV +
Sbjct: 180 MDG-VDFYAANMSGPIVLVIGAEGRGLGRLVKQKCDDVVSIPMNGGVNSLNASAAGAVLM 238

Query: 274 YI--TQNH 279
           Y    Q H
Sbjct: 239 YEVVRQRH 246


>gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           ATCC 17745]
 gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           3_1_44]
 gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
           ATCC 17745]
 gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
           3_1_44]
          Length = 243

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKIVG 106
           ++ G + V  AL +  R I ++L +++ +   L    NL       V+  P + ++K   
Sbjct: 4   YIVGRNAVKEALKSG-RSIQRILVSEDKVKTGLADIVNLAKSQGIEVRPTPVKQMNK-YD 61

Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+    + +    L     +      LL++ D V DPHN+GAI+R+A       
Sbjct: 62  LEVPHQGVIALVSAVQFKELGEVLQETTHEVPLLILTDGVEDPHNMGAIIRTAECAGATA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  KR++   +A +AK+++GA+E IP ++I N+   ++++   GF  +G   +  + L 
Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQIGNVVQTIKQLQKQGFWVMGAHMEGDRTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +        +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|326937885|gb|AEA13781.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 247

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+ +             ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEELFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|227514006|ref|ZP_03944055.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
           ATCC 14931]
 gi|227087650|gb|EEI22962.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus fermentum
           ATCC 14931]
          Length = 251

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 15/244 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVP 97
            T++  + F+ G H   AAL +    I ++   K    +A+A+L   A   H   +  VP
Sbjct: 2   KTNEENSEFIIGRHPAMAALKSDQE-INKVFIQKGLKTDAIAQLVKSAKERHLV-ISNVP 59

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
              +D++   +  HQG+AL  A     T+D +             ++LD + DPHN+G+I
Sbjct: 60  KTKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A    GII  KR S   ++V+AK+++GA+EH+P  R++NL    +++   G    
Sbjct: 119 LRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKSGVWLF 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G          +      +AL++G EGKG+ P  ++T   M  + M G +++LN S AA+
Sbjct: 179 GTDMQG-TDYRRWDAKGAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAAS 237

Query: 271 VALY 274
           + +Y
Sbjct: 238 LLIY 241


>gi|15923521|ref|NP_371055.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926209|ref|NP_373742.1| hypothetical protein SA0490 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282216|ref|NP_645304.1| hypothetical protein MW0487 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49482761|ref|YP_039985.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49485396|ref|YP_042617.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82750239|ref|YP_415980.1| tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|148266991|ref|YP_001245934.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393038|ref|YP_001315713.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
 gi|156978860|ref|YP_001441119.1| hypothetical protein SAHV_0529 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315641|ref|ZP_04838854.1| hypothetical protein SauraC_05752 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731136|ref|ZP_04865301.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253732539|ref|ZP_04866704.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005325|ref|ZP_05143926.2| hypothetical protein SauraM_02620 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424645|ref|ZP_05601072.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427313|ref|ZP_05603712.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257429949|ref|ZP_05606333.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257435555|ref|ZP_05611603.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257795370|ref|ZP_05644349.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|258408943|ref|ZP_05681224.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9763]
 gi|258420419|ref|ZP_05683362.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9719]
 gi|258422622|ref|ZP_05685528.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9635]
 gi|258439340|ref|ZP_05690272.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|258444080|ref|ZP_05692417.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|258446348|ref|ZP_05694506.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
 gi|258448441|ref|ZP_05696556.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|258453797|ref|ZP_05701771.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5937]
 gi|269202154|ref|YP_003281423.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894966|ref|ZP_06303189.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A8117]
 gi|282903119|ref|ZP_06311010.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282904909|ref|ZP_06312767.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282910172|ref|ZP_06317976.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282913364|ref|ZP_06321153.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282915854|ref|ZP_06323619.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282918319|ref|ZP_06326056.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282923281|ref|ZP_06330961.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282928868|ref|ZP_06336459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A10102]
 gi|283769687|ref|ZP_06342579.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283957329|ref|ZP_06374782.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293500410|ref|ZP_06666261.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509355|ref|ZP_06668066.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M809]
 gi|293523942|ref|ZP_06670629.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295406908|ref|ZP_06816711.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|295427069|ref|ZP_06819705.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275777|ref|ZP_06858284.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297208755|ref|ZP_06925183.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297246268|ref|ZP_06930117.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|297590578|ref|ZP_06949217.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300912845|ref|ZP_07130287.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81649904|sp|Q6GBV6|TRMHL_STAAS RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81651699|sp|Q6GJD7|TRMHL_STAAR RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81704678|sp|Q7A1Q9|TRMHL_STAAW RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81706174|sp|Q7A794|TRMHL_STAAN RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81782082|sp|Q99W72|TRMHL_STAAM RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|13700422|dbj|BAB41720.1| SA0490 [Staphylococcus aureus subsp. aureus N315]
 gi|14246299|dbj|BAB56693.1| putative tRNA/rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203652|dbj|BAB94352.1| MW0487 [Staphylococcus aureus subsp. aureus MW2]
 gi|49240890|emb|CAG39557.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49243839|emb|CAG42264.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82655770|emb|CAI80170.1| probable tRNA/rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|147740060|gb|ABQ48358.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945490|gb|ABR51426.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156720995|dbj|BAF77412.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725101|gb|EES93830.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253729468|gb|EES98197.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257272215|gb|EEV04338.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275506|gb|EEV06979.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257279146|gb|EEV09747.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257284746|gb|EEV14865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257789342|gb|EEV27682.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|257840294|gb|EEV64757.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9763]
 gi|257843609|gb|EEV68015.1| trmH family tRNA/rRNA methyltransferase [Staphylococcus aureus
           A9719]
 gi|257847194|gb|EEV71202.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9635]
 gi|257847677|gb|EEV71676.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|257850750|gb|EEV74695.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|257854942|gb|EEV77887.1| SpoU rRNA methylase [Staphylococcus aureus A6300]
 gi|257858310|gb|EEV81197.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|257864053|gb|EEV86807.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5937]
 gi|262074444|gb|ACY10417.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282314149|gb|EFB44539.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317453|gb|EFB47825.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282320150|gb|EFB50495.1| RNA methyltransferase, TrmH family, group 3 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282322396|gb|EFB52718.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325564|gb|EFB55872.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282331734|gb|EFB61245.1| RNA methyltransferase TrmH family group 3 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282589476|gb|EFB94565.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A10102]
 gi|282596074|gb|EFC01035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282762648|gb|EFC02785.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A8117]
 gi|283459834|gb|EFC06924.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283469824|emb|CAQ49035.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790780|gb|EFC29595.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|285816231|gb|ADC36718.1| TrmH family tRNA/rRNA methyltransferase YacO [Staphylococcus aureus
           04-02981]
 gi|290920905|gb|EFD97966.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095415|gb|EFE25676.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291467452|gb|EFF09967.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus M809]
 gi|294968139|gb|EFG44165.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|295128857|gb|EFG58487.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886700|gb|EFH25605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297176866|gb|EFH36124.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|297576877|gb|EFH95592.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300885949|gb|EFK81152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312439049|gb|ADQ78120.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829027|emb|CBX33869.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128824|gb|EFT84823.1| hypothetical protein CGSSa03_13067 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315193895|gb|EFU24289.1| hypothetical protein CGSSa00_12717 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323439802|gb|EGA97519.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O11]
 gi|329727899|gb|EGG64348.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329731950|gb|EGG68306.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 248

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|163857018|ref|YP_001631316.1| putative tRNA/rRNA methyltransferase [Bordetella petrii DSM 12804]
 gi|163260746|emb|CAP43048.1| putative tRNA/rRNA methyltransferase [Bordetella petrii]
          Length = 245

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I  +    +   +      +        V  V  + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKDIYVEASRRDKRMLAFLEQAERAGRRVHPVSAERLDGLA- 64

Query: 107 KEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +   HQG+       L        LD +    LL+VLD V DPHN+GA LR+A A     
Sbjct: 65  RGTRHQGVVALAEERLLAVDVDEVLDTIEGPALLLVLDGVTDPHNLGACLRTADAAGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +  +   ++ + + A GA + +PYI ++NL   L+ +   G   +G    +   L 
Sbjct: 125 VVAPRDRAVGLNSTVQRVACGAADTVPYITVTNLARTLRGLKERGVWVVGTDDQAAGSLH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY +    
Sbjct: 185 TVDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYESVRQR 243


>gi|331268394|ref|YP_004394886.1| TrmH family RNA methyltransferase [Clostridium botulinum BKT015925]
 gi|329124944|gb|AEB74889.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
           BKT015925]
          Length = 263

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 53/244 (21%), Positives = 108/244 (44%), Gaps = 10/244 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTID 102
           +     + G + V  AL +     + ++A  +    ++    +       +K V  + +D
Sbjct: 18  EEREDLIEGRNAVIEALKSDRTVEYVMIAKGSVTGSINKVVAIAKDKGIVIKEVDRKKLD 77

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
            +    + HQG+     P     ++ +            +++LD + DPHN+G+I+R+A 
Sbjct: 78  SMSITGS-HQGVMAIVTPYQYCEVEDILKCAEEKGEDPFILILDEIEDPHNLGSIMRTAE 136

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  KR +   +  + K+++GA E++   +++NL  ++  +   G    G    
Sbjct: 137 ICGVHGIIIPKRRNVGITPTVYKTSAGATEYMKVAKVANLNRSIDDIKEKGIWVYGADMA 196

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +    Q      +AL++G+EG+G+   T+E    +  + M G I +LN S AA + +Y 
Sbjct: 197 GESYCFQTNFKGAVALVIGSEGRGISKLTKEKCDVLVKVPMVGNITSLNASVAAGIMMYE 256

Query: 276 TQNH 279
               
Sbjct: 257 VLKQ 260


>gi|218895227|ref|YP_002443638.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
 gi|218542507|gb|ACK94901.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus G9842]
          Length = 247

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+ +             ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1]
 gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           extorquens PA1]
          Length = 268

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 108/236 (45%), Positives = 146/236 (61%), Gaps = 1/236 (0%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
               +++ LYG H VS AL N  R   +LLAT+NALARL  +A +  P   + V P  ID
Sbjct: 28  REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPEMVRPSAID 86

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +++G +AVHQGL  E  PL +P  DA+ +  LL+ LD + DPHN+GAI+R+A AF    I
Sbjct: 87  RLLGPDAVHQGLYAEAEPLAAPAFDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 146

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +TT R+SP+ + VLAKSASG LEH+P + + NL +AL  +   GF  IGL SD+   L+ 
Sbjct: 147 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTTLDA 206

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   L+LGAEGKGLR +T E    +  +   G I++LNVSNAAA+ LY    
Sbjct: 207 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 262


>gi|317472693|ref|ZP_07932008.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|316899870|gb|EFV21869.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 246

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 12/243 (4%)

Query: 47  ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E   L G + V  AL    P  KI+ L   ++   R            +  V  + +D++
Sbjct: 4   EEYLLAGRNAVLEALRAGKPIDKIYILDGCQDGPVRTIVREAKKTDAVLNFVEKERLDQL 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      ++ +       +     ++LD + DPHN+GAI+R+A   
Sbjct: 64  TKEH--HQGVVAMAAAYEYGQMEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +  +AK+++GAL + P ++++NL++ ++++   G   +    D  
Sbjct: 122 GAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVTNLSNTMEELKERGLWFVCADMDG- 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + ++     I L++G EG G+    +E     A + M G I +LN S AA V  Y   
Sbjct: 181 DMMYRQNLTGPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
 gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
          Length = 548

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/271 (29%), Positives = 130/271 (47%), Gaps = 21/271 (7%)

Query: 27  HRDYKKMQSFNQKSRHTSQ-------PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           +RD  + Q+F    R   +         +  L+G H   AAL    R I ++  T    +
Sbjct: 202 NRDEAR-QAFAPDHRQGEELAHTPDAQADDMLWGRHATQAALE-AGRPIHRIWCTSELRS 259

Query: 80  RLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDA 128
              +   L         V+ V    + ++ G  AVHQG+AL+TA       P L     A
Sbjct: 260 SPKFLQLLREAKSSGVLVEEVTWARLGQLTG-GAVHQGIALQTASADTLDLPTLVEGCAA 318

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    LL+ LD + DPHN+GAI+RSA A    G++  +R S   +  +AK A+GALEH+P
Sbjct: 319 LGEPPLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLP 378

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R+ NL  +L+ +   G++ +GL+ +    L +      +A++ G+EG+GL   T+   
Sbjct: 379 VARVVNLNRSLETLKDAGYRVVGLAGEGDVTLAEADLEGPLAIVTGSEGQGLSLLTRRHC 438

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +  + + G+  +LN S A A+ LY     
Sbjct: 439 DQLIRIPLRGVTPSLNASVATAMCLYEVARR 469


>gi|196047744|ref|ZP_03114943.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB108]
 gi|196021422|gb|EDX60130.1| RNA methyltransferase, TrmH family, group 3 [Bacillus cereus
           03BB108]
          Length = 247

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL +  R I ++   + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALRSG-RDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+ +             ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKGRGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 245

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V  AL    R I ++L + + +     D           V+  P + +++   
Sbjct: 4   YIVGRNAVKEALK-AGRSIQRILVSDDKIKTGLSDIVGLAKSKGIEVRPTPVKQMNR-YE 61

Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+      +    L     ++   + LL++ D V DPHN+GAI+R+A       
Sbjct: 62  TDVPHQGVIAFVNAVEFKDLGEVLQESNHENPLLILTDGVEDPHNMGAIIRTAECVGATA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  KR++   +A +AK+++GA+E I  +++ N+T  ++++   GF  +G   +  + L 
Sbjct: 122 VLIPKRHNAPINATVAKTSAGAVEQISLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +        L++G EGKG+    +E    +  + M G + +LN S AAA+ +Y      
Sbjct: 182 EADLTIPTVLVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAILMYEAVRQR 240


>gi|91788889|ref|YP_549841.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91698114|gb|ABE44943.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas sp. JS666]
          Length = 264

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106
            L+G H V   L    + + ++        AR+    +      V+ +      + K+ G
Sbjct: 22  VLFGFHAVGVRLKTAPQSVLEVFFDASRRDARMRQFTDRAREAGVRLIESDGLRLAKMCG 81

Query: 107 KEAVHQGLALETAPLLS---------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+      +              +A     LL+VLD V DPHN+GA LR A   
Sbjct: 82  SHG-HQGVVARVDAVAQVKSLDELLEQLEEAGTAQPLLLVLDGVTDPHNLGACLRVADGA 140

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ 
Sbjct: 141 GAHAVIAPKDHAAGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAP 200

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +        +AL+LGAEG+G+R  T++T   +  + M G +++LNVS A+ V LY   
Sbjct: 201 KTIYDVDLKGPVALVLGAEGEGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEAL 260

Query: 278 NHFA 281
              +
Sbjct: 261 RQRS 264


>gi|167769675|ref|ZP_02441728.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
           17241]
 gi|167668036|gb|EDS12166.1| hypothetical protein ANACOL_01009 [Anaerotruncus colihominis DSM
           17241]
          Length = 256

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 118/248 (47%), Gaps = 15/248 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTI 101
           E   + G + V   L    R++  +    +  AR    + +         PVK V  + +
Sbjct: 11  EEGLVLGRNAVIELLK-GPREVECIYICDDVPARGQPISRIVALAKEARVPVKRVDVRRL 69

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D +      HQG+A + A     T++ +           LL++ D + DPHN+GAI+R+A
Sbjct: 70  DTLA-NGLNHQGVAAQAAAFHYCTVEELFARAAARGEPPLLVIADSIEDPHNLGAIIRTA 128

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    G+I  KR     +A++ ++++GA+EH+P  R++NL   ++++ + G    G  +
Sbjct: 129 EAAGAHGLIIPKRGGAGLTAIVGRTSAGAVEHLPVARVTNLVSTIKELKARGVWIYGADA 188

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  +Q       AL++G+EG GL    +ET  ++  L M G + +LN S AA + +Y
Sbjct: 189 SGAR-WDQTDLTGPSALVIGSEGFGLSRLVRETCDALLSLPMRGEVNSLNASVAAGILMY 247

Query: 275 ITQNHFAK 282
                  K
Sbjct: 248 EAVRQRTK 255


>gi|317402744|gb|EFV83291.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Achromobacter
           xylosoxidans C54]
          Length = 245

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++    +   +      +        +  V  + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFIEQAERAGCRLHPVAMERLDGLA- 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +   HQG+            +   LD +    LL++LD V DPHN+GA LR+A A     
Sbjct: 65  RGTRHQGVVALADERQLAVDVDEVLDVIEGPPLLLILDGVTDPHNLGACLRTADAAGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   ++ + + A GA + +PY+ ++NL   ++ +   G   +G    +   + 
Sbjct: 125 VIAPRDRAVGLNSTVQRVACGAADTVPYLMVTNLARTMRSLKDRGVWLVGTDDQATDSMH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +      +A ++GAEG+G+R  T+ET   + ++ M G +++LNVS A+AV LY T    
Sbjct: 185 RIDARQPMAWVMGAEGEGMRRLTRETCDQLVNIPMLGSVESLNVSVASAVCLYETVRQR 243


>gi|57651408|ref|YP_185464.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87162210|ref|YP_493220.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194294|ref|YP_499086.1| hypothetical protein SAOUHSC_00513 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151220706|ref|YP_001331528.1| hypothetical protein NWMN_0494 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508771|ref|YP_001574430.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141032|ref|ZP_03565525.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|262049574|ref|ZP_06022443.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
 gi|282924445|ref|ZP_06332117.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9765]
 gi|284023541|ref|ZP_06377939.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294850307|ref|ZP_06791041.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|304381870|ref|ZP_07364517.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|75410372|sp|Q9AGT0|TRMHL_STAAE RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|81695161|sp|Q5HIE3|TRMHL_STAAC RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|13183698|gb|AAK15305.1|AF327733_2 YacO [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57285594|gb|AAW37688.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128184|gb|ABD22698.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87201852|gb|ABD29662.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150373506|dbj|BAF66766.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367580|gb|ABX28551.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259162314|gb|EEW46887.1| hypothetical protein SAD30_0368 [Staphylococcus aureus D30]
 gi|269940104|emb|CBI48480.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282592856|gb|EFB97860.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A9765]
 gi|294822819|gb|EFG39254.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|302750423|gb|ADL64600.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304339656|gb|EFM05603.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196657|gb|EFU27004.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141604|gb|EFW33443.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320141768|gb|EFW33596.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313252|gb|AEB87665.1| Putative trmH family tRNA/rRNA methyltransferase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329731031|gb|EGG67404.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 248

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|269467951|gb|EEZ79686.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 247

 Score =  246 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 11/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDK 103
           ++LF+YG H + A L+   + I ++    N    RL+        H   V+    Q ++K
Sbjct: 3   KSLFIYGFHGIQAQLDTNPQNILKVSTLDNRQDKRLNTLIQQLDQHGIRVEKTSKQKLEK 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVA 156
           + G    HQG+  E      P  D + N         L+++LD + DP N+GA LRSA A
Sbjct: 63  LSGSR-THQGVVAEVLLPTLPNHDELLNHVSKLNHPSLILILDSIQDPRNLGACLRSANA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++  K  S   +A++ K+++GAL  +    ++NL+ +++ +       IGL   +
Sbjct: 122 AGVDCVVINKDGSAPVNALVHKTSAGALNQLKVFSVTNLSRSIKALQKQDIWIIGLDGST 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +   Q   +  IA+++G EG GLR  T+++   +A + M G +++LNVS A  +AL+ T
Sbjct: 182 DQSFYQIDLSSSIAIVMGTEGSGLRRLTKQSCDQLAMIPMKGNVESLNVSVATGIALFET 241

Query: 277 QNHF 280
               
Sbjct: 242 SRQR 245


>gi|209884778|ref|YP_002288635.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha
           carboxidovorans OM5]
 gi|209872974|gb|ACI92770.1| RNA methyltransferase, TrmH family, group 3 [Oligotropha
           carboxidovorans OM5]
          Length = 274

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 121/269 (44%), Positives = 162/269 (60%), Gaps = 8/269 (2%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
           F  K SH    R+         ++  +  H +    + LYG HTV+AAL NP RKI +L 
Sbjct: 9   FKGKSSH----RKPPHGRGGRPAWRDRDDHNAP---VILYGWHTVTAALLNPKRKIRKLF 61

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
           AT+NAL RL  +     P P + V P  ID+ +G +AVHQGL  E  PL +  +  +   
Sbjct: 62  ATENALRRLTEENITLRPAP-EIVRPSVIDQRLGPDAVHQGLLAEADPLPALDIAKLPQD 120

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++VLD + DPHN+GAILRSA AF+   ++TT R+SP  + VLAKSASGALE +P + +
Sbjct: 121 GIVLVLDQITDPHNVGAILRSAAAFAVKAVVTTARHSPEATGVLAKSASGALELVPLVTV 180

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  AL +M   GF T+GL S+    L +      +AL+LGAEGKGLR  T+ET  ++A
Sbjct: 181 QNLARALNEMKEHGFLTVGLDSEGSADLAETELRAPLALVLGAEGKGLRQLTRETCGTVA 240

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            L MPG IK+LNVSNA A+ALYI      
Sbjct: 241 RLDMPGEIKSLNVSNATALALYIGATRLG 269


>gi|149914472|ref|ZP_01903003.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
 gi|149811991|gb|EDM71824.1| tRNA/rRNA metyltransferase [Roseobacter sp. AzwK-3b]
          Length = 275

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 142/240 (59%), Gaps = 10/240 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++L+G+H V  AL NP+R   +L+ T+NA  RL     +      +   P+     +  
Sbjct: 37  TVWLFGLHAVRDALMNPARVKLRLIVTRNAADRLGEAIAV-GGLEPEIADPRRFTAPLDP 95

Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           ++VHQG ALE  PL    L+ V           +++LD V+DPHN+GAILRSA  F    
Sbjct: 96  QSVHQGAALEVKPLDWGPLEGVCASAPGELPPRVLLLDRVSDPHNVGAILRSAEVFGACA 155

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R+S  E+  LAK+ASGALE  PY+R++NL  A++ +   G+  +GL+ ++++ +E
Sbjct: 156 VIAPHRHSAPETGALAKTASGALERQPYLRVTNLGRAIEALQGMGYVVLGLAGEAERTIE 215

Query: 222 QEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +   ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAAVALY ++ 
Sbjct: 216 EALEGRRSGPVALVLGAEGPGLREKTRETCDELVRIAFSGDFGSLNVSNAAAVALYASRR 275


>gi|288554706|ref|YP_003426641.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288545866|gb|ADC49749.1| tRNA/rRNA methyltransferase [Bacillus pseudofirmus OF4]
          Length = 249

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDK 103
           +  F+ G + V  AL      I ++   + +                  ++  P + +++
Sbjct: 2   KQEFILGKNPVIEALRAGH-AINKIWIAEGSNKGQMTKVVQLAKEQGVLIQNAPKKKLEQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +V   + HQG+    A      +D +             ++LD + DPHN+G+I+R+A A
Sbjct: 61  LVDS-SNHQGVVASIAAYEYAEMDDLFALAEKRGEEPFFLILDEIEDPHNLGSIMRTADA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  KR +   +  +AK+++GA+E+IP +R++N+   +  +   G    G  +  
Sbjct: 120 AGAHGIIIPKRRAVGLTQTVAKASTGAIEYIPVVRVTNIARTMDDLKKRGLWFAGTDAKG 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                Q   +  I L++G+EGKG+    +E    +  + M G + +LN S AA++ +Y  
Sbjct: 180 SADYRQASFDMPIGLVIGSEGKGISRLIKEKCDFLIQIPMVGQVTSLNASVAASLLMYEV 239

Query: 277 QNHF 280
               
Sbjct: 240 YRRR 243


>gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
           trichosporium OB3b]
 gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
           trichosporium OB3b]
          Length = 270

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 108/253 (42%), Positives = 148/253 (58%), Gaps = 2/253 (0%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K  RN R     ++   +       + + LYG H V  AL    RK+  L AT+ A  R+
Sbjct: 7   KGPRNDRRLPPREAPPAEPFRRPSADVVVLYGAHAVREALRARRRKLLTLYATEGAAERI 66

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDH 140
              A      P + V P+ +   +G E+VHQGL LE  PL +  +  +     +++VLD 
Sbjct: 67  APLAAEAGLTP-QIVDPRALTSRLGDESVHQGLLLEARPLPAAEIADIETKSGVVLVLDQ 125

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DPHN+GAILR+A AF+ D ++ T R SP  + VLAK+ASGALEH+  + + NL  ALQ
Sbjct: 126 VTDPHNVGAILRTAAAFAVDALVMTDRNSPELTGVLAKAASGALEHVLIVSVVNLARALQ 185

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++   G   +GL S++  PLE+    + IAL+LGAEGKGLR  T+E    +A L MPG I
Sbjct: 186 ELSQSGRLVVGLDSEAPAPLEETRLQNPIALVLGAEGKGLRRLTRERCDVLARLDMPGPI 245

Query: 261 KALNVSNAAAVAL 273
           K+LNVSNA AVAL
Sbjct: 246 KSLNVSNACAVAL 258


>gi|117923731|ref|YP_864348.1| RNA methyltransferase [Magnetococcus sp. MC-1]
 gi|117607487|gb|ABK42942.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Magnetococcus sp. MC-1]
          Length = 246

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107
           ++GV+ V A L +  R +  L   K    +   +          P++      +D++   
Sbjct: 7   IHGVNPVQALLESG-RPVSSLWVLKGRHGKRVEEMIEGFRARGVPIQFCERTAMDRMADG 65

Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            A HQG+    AP  + + D +          LL++LD V DPHN+GAI+RSA AF    
Sbjct: 66  GA-HQGVIARCAPREAMSWDDLLDVVEKAKQPLLVILDGVEDPHNLGAIMRSAEAFGALA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  K  +   +A   K+++GA E +  IR++NL  A++++       IGL+ ++  PL 
Sbjct: 125 VILPKDRTAPLNAGAIKASAGAAERLDLIRVTNLARAIEQLQQRNVWVIGLAGEAGAPLI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +AL++G EG GLR  T+E    +A + M G + +LNVS A  VALY      
Sbjct: 185 GTLDCKGPLALVMGNEGSGLRRLTRERCDQLAAIPMGGGVGSLNVSVATGVALYEVLRQR 244

Query: 281 A 281
           A
Sbjct: 245 A 245


>gi|193216018|ref|YP_001997217.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089495|gb|ACF14770.1| RNA methyltransferase, TrmH family, group 3 [Chloroherpeton
           thalassium ATCC 35110]
          Length = 243

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG + V   +     ++ ++     T+ +  +        H   +       + ++ G
Sbjct: 4   VVYGRNAVLELIRTRPEEVEKIYFQFNTEQSKLKEILVTAKRHNISIGKARNNRLVELSG 63

Query: 107 KEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +  HQG+      +    LD +      + QL+++LD + DPHN+GAI+R+A A + D 
Sbjct: 64  TDK-HQGVCALVGKVKYFELDEILARPRNSKQLIVILDGLEDPHNVGAIIRTAEAAAVDA 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I         +A +AK+++GAL HI   ++ NL+  ++++   GF   GL  D +K   
Sbjct: 123 VIIPHDSGCPINATVAKTSAGALSHIRLCKVVNLSQTIERLKKHGFWVYGLDMDGEKNYY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   ND  A+++G+EGKG+R   ++   ++  L + G +++LN S +AA+ LY      
Sbjct: 183 EIDFNDHCAIVVGSEGKGIRQLVRKNCDALIRLPIAGNVESLNASVSAAIPLYEAMRQR 241


>gi|167745715|ref|ZP_02417842.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
 gi|167655027|gb|EDR99156.1| hypothetical protein ANACAC_00408 [Anaerostipes caccae DSM 14662]
          Length = 246

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 12/243 (4%)

Query: 47  ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E   L G + V  AL    P  KI+ L   ++   R            +  V  + +D++
Sbjct: 4   EEYLLAGRNAVLEALRAGKPIDKIYILDGCQDGPVRTIVREAKKTDAVLNFVEKERLDQL 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      ++ +       +     ++LD + DPHN+GAI+R+A   
Sbjct: 64  TKEH--HQGVVAMAAAYEYGQMEDLFARAEEKKEDPFFILLDGIEDPHNLGAIIRTANLA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +  +AK+++GAL + P ++++NL+  ++++   G   +    D  
Sbjct: 122 GAHGVIIPKRRAVGLTPTVAKTSAGALNYTPVVKVTNLSKTMEELKERGLWFVCADMDG- 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + ++     I L++G EG G+    +E     A + M G I +LN S AA V  Y   
Sbjct: 181 DMMYRQNLTGPIGLVIGNEGSGVSRLVKERCDYTASIPMNGDIDSLNASVAAGVLAYEIV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|163938099|ref|YP_001642983.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|163860296|gb|ABY41355.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           weihenstephanensis KBAB4]
          Length = 247

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++ G + V  AL    R I ++L  + A     ++       +   ++  P + +D++
Sbjct: 3   SEYIIGRNPVIEALR-AGRDINKILVAEGAAKGQVQIVLALAKENKVILQHAPKKKLDQL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V  E  HQG+  + A      L+ +             ++LD + DPHN+G+I+R+A A 
Sbjct: 62  V--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNEDPFFLILDEIEDPHNLGSIMRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G    G  +  K
Sbjct: 120 GAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGK 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   N  I L++G+EGKG+     E    +  L M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVY 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|157373892|ref|YP_001472492.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|157316266|gb|ABV35364.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sediminis
           HAW-EB3]
          Length = 246

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQTID 102
            +  F +G+H V A L +   ++ ++         RL     +   +   V+T   + +D
Sbjct: 2   KKQDFTFGIHAVEAVLKHSPERVIEMWVQAGRDDQRLATLLQMAAEYGVSVQTSARKVLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +       HQG+      +     + +        +   ++LD V DPHN+GA LR+A A
Sbjct: 62  EK-SDNGQHQGVLARVKAVKQLNDNDLLALVEKTETPFFLILDGVTDPHNLGACLRNADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  S   +  ++K A GA E +P  +++NL   ++ +   G   +G + ++
Sbjct: 121 AGVHGVIVPRDNSVGLTPTVSKVACGAAEVVPLFQVTNLARTMKSLQDKGVWIVGAAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L +      +A+ +GAE KGLR  T+E+  S+A + M G + +LNVS A+ + L+  
Sbjct: 181 DSDLYKTDLKGSLAIAMGAEDKGLRRLTRESCDSIASIPMSGSVSSLNVSVASGICLFEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|227510713|ref|ZP_03940762.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227189834|gb|EEI69901.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 255

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 122/247 (49%), Gaps = 17/247 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLAT------KNALARLDWDANLPHPFPVKTVPP 98
           Q    F+ G H V AAL + S  I +L         +N ++ +   A       +  VP 
Sbjct: 5   QENEEFVMGRHPVVAALKSDS-PINKLFIQTGIKKDENIISEILKLARKKRLV-ISEVPK 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
           Q +D++      HQG+ L  A     T+D +             ++LD++ DPHN+G+I+
Sbjct: 63  QKLDRL-SVGQNHQGVVLSVAAFEYATVDDLFVNAKKQETEPFFVILDNIEDPHNLGSII 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    GII  K  +   +AV+AK+++GA+E +P  R++NL   ++++ S G    G
Sbjct: 122 RTADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKSRGMWVFG 181

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +      +      +A+I+G EGKG+ P  ++    M  + M G I++LN S AA+V
Sbjct: 182 TDIEG-TDYRRWDAKGSVAIIIGNEGKGISPLLKKQVDEMLTIPMVGDIQSLNASVAASV 240

Query: 272 ALYITQN 278
            +Y   N
Sbjct: 241 LIYQGFN 247


>gi|167589923|ref|ZP_02382311.1| RNA methyltransferase TrmH, group 3 [Burkholderia ubonensis Bu]
          Length = 247

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +     LS  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|218528187|ref|YP_002419003.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           chloromethanicum CM4]
 gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           chloromethanicum CM4]
          Length = 268

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 109/236 (46%), Positives = 147/236 (62%), Gaps = 1/236 (0%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
               +++ LYG H VS AL N  R   +LLAT+NALARL  +A +  P   + V P  ID
Sbjct: 28  REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPEMVRPSAID 86

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +++G +AVHQGL  E  PL +P LDA+ +  LL+ LD + DPHN+GAI+R+A AF    I
Sbjct: 87  RLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 146

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +TT R+SP+ + VLAKSASG LEH+P + + NL +AL  +   GF  IGL SD+   L+ 
Sbjct: 147 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTTLDA 206

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   L+LGAEGKGLR +T E    +  +   G I++LNVSNAAA+ LY    
Sbjct: 207 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 262


>gi|332365775|gb|EGJ43532.1| tRNA (guanosine-2'-O-)-methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 233

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 9/233 (3%)

Query: 55  HTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           H V+ AL  N   K++     +        D        +   P +T+ ++    AVHQG
Sbjct: 2   HAVTEALAANTGNKLYIQDDLRGKKVDKIKDLAAEKKVSISWTPKKTLQEMTD-GAVHQG 60

Query: 114 LALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             L  A       + +       ++ LL++LD + DPHN+G+ILR+A A +  G+I  K 
Sbjct: 61  FVLRVAEFAYTDFEVLLKKAEQEDNPLLLILDGLTDPHNLGSILRTADATNVTGVIIPKH 120

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   + V+AK+++GA+EHIP  R++NL+  L K+   GF   G       P  +     
Sbjct: 121 RAVGVTPVVAKTSTGAIEHIPIARVTNLSQTLDKLKEAGFWIFGTDMQG-TPSHKWNTAG 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           K+ALI+G EGKG+    ++    M  + M G +++LN S AAA+ +Y    + 
Sbjct: 180 KLALIIGNEGKGISSNIKKQVDEMISIPMNGHVQSLNASVAAAILMYEVFRNR 232


>gi|302039376|ref|YP_003799698.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
           defluvii]
 gi|300607440|emb|CBK43773.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Nitrospira
           defluvii]
          Length = 246

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            +YG+H V  AL    R I +LL   T      +   A      PV+  P   +D++V  
Sbjct: 1   MIYGLHAVREALRAGVRPIQRLLVLGTDRQFGEISRLAR-EQRVPVRVEPRAALDRLV-P 58

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    A       D +         + LL++LD V DPHN+GAILR+A A    
Sbjct: 59  SGHHQGVVGVVAAKAYAEPDDILASAQVEGQTPLLVLLDGVEDPHNLGAILRTAEASGVQ 118

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+   +R +   ++V+AK+++GA++++P  R+ NL+  ++++   G     L +++ K  
Sbjct: 119 GVFIPERRAVGLTSVVAKASAGAVDYMPVGRVPNLSRLIERLQDAGIWVYALDAEAPKAY 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   +  +AL+ G EG G+RP  ++     AH+ M G + +LNVS +AA+ LY      
Sbjct: 179 TELDFSGPVALVFGGEGTGVRPGVRDACDEAAHIPMLGKVSSLNVSASAAIVLYEALRQR 238


>gi|121610346|ref|YP_998153.1| RNA methyltransferase [Verminephrobacter eiseniae EF01-2]
 gi|121554986|gb|ABM59135.1| RNA methyltransferase, TrmH family, group 3 [Verminephrobacter
           eiseniae EF01-2]
          Length = 248

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L      + ++      ++A  R   +        +       I K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPESVIEIYHEATRRDARMRQFLERARAAGARLIEADGMRIAKLAG 65

Query: 107 KEAVHQGLALETAP---------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A    P         LL     A     LL+VLD V DPHN+GA LR A   
Sbjct: 66  SHG-HQGVAARVQPVAPISSLDELLEKLQAAGSGPPLLLVLDGVTDPHNLGACLRVADGA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG   D+ 
Sbjct: 125 GAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLDELKERSIWCIGTCDDAP 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q      +AL+LGAEG G+R +T++T   +A + M G +++LNVS A+ + LY   
Sbjct: 185 GTLYQLDLKGPVALVLGAEGSGMRQRTRKTCDELARIPMQGAVESLNVSVASGICLYEAL 244

Query: 278 NHFA 281
              A
Sbjct: 245 RQRA 248


>gi|288941318|ref|YP_003443558.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288896690|gb|ADC62526.1| RNA methyltransferase, TrmH family, group 3 [Allochromatium vinosum
           DSM 180]
          Length = 247

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 53  GVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEA 109
           G+H+V AAL   +  + ++   +     RL   A+L       ++ V    +++      
Sbjct: 9   GIHSVRAALKFGAEGVDEVWLERARRDRRLQELADLAREAGIRLRQVERAELERAAA-GV 67

Query: 110 VHQGLAL-------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            HQG           T   L+  LD +     L++LD V DPHN+GA LR+A A     +
Sbjct: 68  NHQGALAWVRVPSSRTESDLAALLDRLDVPPFLLLLDEVQDPHNLGACLRTAEAVGVQAV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   + V+ K ASGA E +PY++++NL   +  +   G   IG + ++   L  
Sbjct: 128 IAPKDNAVGLTPVVCKVASGAAETLPYVQVTNLARVMDALKERGIWLIGAAGEASDELYA 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + L++GAEG GLR  T+E    +  L M G +++LNVS AA V LY      
Sbjct: 188 ADLTGPLGLVMGAEGSGLRRLTRERCDRLVRLPMCGQVESLNVSVAAGVCLYEALRQR 245


>gi|254475163|ref|ZP_05088549.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
 gi|214029406|gb|EEB70241.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria sp. R11]
          Length = 294

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 144/246 (58%), Gaps = 7/246 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  +  E ++L+G+H V  AL NP+R+  +L+ T NA  +L  DA        + +
Sbjct: 47  KEQAKKAASAETVWLFGLHAVRDALLNPNREKLRLMVTPNAETKLS-DAIAQSGIEAEVI 105

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  + K++VHQG  LE  PL    L        +  +++LD V DPHN+GAILRS
Sbjct: 106 DPRKFNPPIDKQSVHQGAVLEVKPLNWGGLAENCIGAEAPRVLLLDRVTDPHNVGAILRS 165

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+  S  E+  LAK+ASGALE  PY+R+ NL D + ++   GF  +GL 
Sbjct: 166 AEVLGASAVIGTRHNSAPETGALAKTASGALERQPYLRMRNLADTIVELQRMGFLVLGLD 225

Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E  +   K D +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 226 GEAEQTIETVLEGRKGDPVALVLGAEGPGLRQKTKETVDHLVKIDFAGGFGSLNVSNAAA 285

Query: 271 VALYIT 276
           +ALY +
Sbjct: 286 IALYAS 291


>gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
 gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
          Length = 243

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V  AL +  R I +++ +++ +     D           V+  P + ++K   
Sbjct: 4   YIVGRNAVKEALKSG-RSIQRIMVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNK-YD 61

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+    + +    L  V         LL++ D V DPHN+GAI+R+A       
Sbjct: 62  LEVPHQGVIALVSAVQFKELGEVLQETNHDVPLLILTDGVEDPHNMGAIIRTAECVGATA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  KR++   +A +AK+++GA+E IP +++ N+   ++++   GF  +G   +  + L 
Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +        +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|258452736|ref|ZP_05700734.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5948]
 gi|257859609|gb|EEV82459.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           A5948]
          Length = 248

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGKHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|58584746|ref|YP_198319.1| rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419062|gb|AAW71077.1| rRNA methylases [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 258

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 137/237 (57%), Gaps = 9/237 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDK 103
           +N +LYG HT   AL N +R   +LL T+N+    + +           V+ V  + + +
Sbjct: 8   KNFWLYGKHTCMLALKNKNRLCIELLVTENSYREYEKEIRQCVDSKGIKVQLVKNKILSE 67

Query: 104 IVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           ++ K A HQG+AL+ AP+L         ++  +S  +++LD V D HNIG+ILR++  F+
Sbjct: 68  VLSKSANHQGIALKVAPILHSLSIKEIAESSSDSSTIVILDQVTDTHNIGSILRTSACFN 127

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++    +SPSE+A +AK+ASG L+ +P I ++N+   ++ +   G+   G  S++K+
Sbjct: 128 VDALVLPYNHSPSENASIAKAASGTLDIVPLIHVTNVVKTMEYLKKVGYWCYGFDSNAKE 187

Query: 219 PLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +++      KI +I G+EGKG+R   +E    +  + M  +I +LNVSNAAA+ LY
Sbjct: 188 NIDEIKSFGKKIVIIFGSEGKGMRRLVKENCDYLLKIPMSNVIDSLNVSNAAAIGLY 244


>gi|298693863|gb|ADI97085.1| rRNA methylase [Staphylococcus aureus subsp. aureus ED133]
          Length = 248

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKGGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   +  +   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|313635070|gb|EFS01420.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
           N1-067]
          Length = 251

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   +       +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGTQKGVLKQVLTLAKERKVQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILR 152
            I+K+V    VHQG+A + A      LD + N+          ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR +   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQN 278
           LY    
Sbjct: 239 LYEVYR 244


>gi|289433595|ref|YP_003463467.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289169839|emb|CBH26377.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 251

 Score =  245 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 13/246 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   +       +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGTQKGVLKQVLTLAKERKVQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILR 152
            I+K+V    VHQG+A + A      LD + N+          ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQN 278
           LY    
Sbjct: 239 LYEVYR 244


>gi|302332245|gb|ADL22438.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 248

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVIVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   +  +   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDDLKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|323443096|gb|EGB00716.1| tRNA/rRNA methyltransferase [Staphylococcus aureus O46]
          Length = 248

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 47  ENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E+  + G H V  A+   +P  KI      K                 V+TVP   +D +
Sbjct: 2   EDTVVVGRHAVREAIITGHPINKILIQEGIKKQQINEILKNAKDQKIIVQTVPKSKLDFL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A 
Sbjct: 62  A--NAPHQGVAALIAPYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADAT 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR S + +  +AK+++GA+EH+P IR++NL   + ++   GF   G  +++ 
Sbjct: 120 GVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNA 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y   
Sbjct: 180 TDYRNLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVF 239

Query: 278 N 278
            
Sbjct: 240 R 240


>gi|160899466|ref|YP_001565048.1| RNA methyltransferase [Delftia acidovorans SPH-1]
 gi|160365050|gb|ABX36663.1| RNA methyltransferase, TrmH family, group 3 [Delftia acidovorans
           SPH-1]
          Length = 263

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 113/245 (46%), Gaps = 13/245 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   +    + I ++      ++A  R   D        +     + + K+ G
Sbjct: 6   VLFGFHAVGVRMKTAPQSIIEVYYEATRRDARMRQFLDRAKSAGVRLIEADGERLAKLAG 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A     +     L   L+ +     +  LL+VLD V DPHN+GA LR A   
Sbjct: 66  SHG-HQGVAARVEAVAQVHSLDELLEQLEADGISKPLLLVLDGVTDPHNLGACLRVADGA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ 
Sbjct: 125 GAHAVIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIWIIGTSDDAP 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K L +       AL+LGAEG G+R  T++T   +  + M G + +LNVS A+ V LY   
Sbjct: 185 KTLYEVDLTGPTALVLGAEGDGMRQLTRKTCDELIGIPMMGAVSSLNVSVASGVCLYEAL 244

Query: 278 NHFAK 282
               +
Sbjct: 245 RQRGQ 249


>gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
 gi|222475374|ref|YP_002563791.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Florida]
 gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
 gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Florida]
          Length = 261

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 13/254 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVP 97
            R  +    +++ G H   AAL NP+R    +L T   L +    A +     V    V 
Sbjct: 2   GRTRNHGGCMWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVA 61

Query: 98  PQTIDKIVGKEAV-HQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHN 146
            + I KI+G   + HQG+AL    L       +R           +  +++LD V D +N
Sbjct: 62  AEKISKILGHGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINN 121

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+RSA  F  D +I  + +SPSES  + K++SGA + +P +++ NL   ++ +   G
Sbjct: 122 VGAIVRSAACFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNG 181

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +   G+ +   K L +    ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVS
Sbjct: 182 YWCYGMDAGGDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVS 241

Query: 267 NAAAVALYITQNHF 280
           NAAA+ALY +    
Sbjct: 242 NAAAIALYSSYLQL 255


>gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase) [Thiomonas sp. 3As]
          Length = 242

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           LYG H V A L      +  +      ++A  +            +KT+  + +  + G 
Sbjct: 4   LYGFHAVGARLRAAPASVHAVYVDASRRDARMQQFLRKVEASGVELKTLSAERLTALAGT 63

Query: 108 EAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +  HQG+  +   L     L   LDAV  + L++ LD V DPHN+GAILR+A A     +
Sbjct: 64  DR-HQGVVAQVDDLPTVHDLHAVLDAVEGAPLVLALDGVTDPHNLGAILRTADAAGVHLV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   +  +A+ ASGA E +PY+ ++NL  +L ++   G   +G    +   +  
Sbjct: 123 IAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMGTDEAATDDVYA 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   L++GAEG G+R   +ET   +  + M G +++LNVS AA V LY      
Sbjct: 183 ANWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240


>gi|121604792|ref|YP_982121.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120593761|gb|ABM37200.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 253

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 111/243 (45%), Gaps = 13/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + + ++      ++A  R   D        +       + K+ G
Sbjct: 7   VLFGFHAVGVRLKTAPKSVLEVFYDVSRRDARMRQFTDRVREAGVRMVECDGLRLAKMCG 66

Query: 107 KEAVHQGLALETAPLLSPT---------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+      +   T          +A     LL+VLD V DPHN+GA LR A   
Sbjct: 67  SHG-HQGVVARVDAVAQVTSLDELLEQLEEAGTAQPLLLVLDGVTDPHNLGACLRVADGA 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D++
Sbjct: 126 GAQAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWCIGTSDDAE 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +        +ALILGAEG+G+R  T++T   +  + M G +++LNVS A+ V LY   
Sbjct: 186 KTIYDVDLTGPVALILGAEGEGMRQLTRKTCDELVSIPMQGAVESLNVSVASGVCLYEAL 245

Query: 278 NHF 280
              
Sbjct: 246 RQR 248


>gi|242372749|ref|ZP_04818323.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
 gi|242349522|gb|EES41123.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W1]
          Length = 255

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 121/242 (50%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++L       +   +           V+TVP   +D 
Sbjct: 8   EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINEILKNAKAQKLIVQTVPKSKLDF 66

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D    SQ        +M+LD + DPHN+G+ILR+A A
Sbjct: 67  LS--NAPHQGVAALVAPYEYADFDQFLQSQKDKDGFSTVMILDGLEDPHNLGSILRTADA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G ++++
Sbjct: 125 SGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWVAGTAANN 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y  
Sbjct: 185 ATDYRDLQADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 244

Query: 277 QN 278
             
Sbjct: 245 FR 246


>gi|86137721|ref|ZP_01056297.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           MED193]
 gi|85825313|gb|EAQ45512.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           MED193]
          Length = 263

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 92/246 (37%), Positives = 144/246 (58%), Gaps = 7/246 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++     E ++L+G+H V  AL NP R+  +L+ T NA  +L+ +A        + V
Sbjct: 15  KEQNKKAGGAETVWLFGLHAVRDALMNPQREKLRLIVTLNAQNKLE-EAIAASGVEPELV 73

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  +   +VHQG ALE  PL   +L           +++LD V DPHN+GAILRS
Sbjct: 74  EPRKFNAPLDPNSVHQGAALEVKPLNWGSLSENCIGAEIPRVILLDRVTDPHNVGAILRS 133

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F    +I T+ +S  E+  LAK+ASGALE  PY+R+ NL D + ++ + G+  +GL 
Sbjct: 134 AEVFGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGYVVLGLD 193

Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E  ++      +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 194 GEAEQTIESCLEGRRDLPVALVLGAEGPGLRQKTKETVDHLVKIDAAGGFGSLNVSNAAA 253

Query: 271 VALYIT 276
           +ALY +
Sbjct: 254 IALYAS 259


>gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101]
          Length = 556

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 124/254 (48%), Gaps = 15/254 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFP 92
           +  R  + P +  ++G H   AAL +  R I ++  T          +L  +A       
Sbjct: 203 ESERFNAGPADDLIWGRHAAQAALESD-RPIHRIWCTPEMRFQPRFMQLLREAK-AGGVL 260

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVR---NSQLLMVLDHVNDPH 145
           V+ V    + ++    AVHQG+ L+ A      L   +D  R      LLM LD + DPH
Sbjct: 261 VEEVTWARLGQLTD-GAVHQGIVLQAAAADTLDLGSLIDGCRSIGEPPLLMALDGITDPH 319

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RSA A    G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   
Sbjct: 320 NLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLETLKEE 379

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G++ IGL+ ++   L +   +  + ++ G+EG GL   T++    +  + + G   +LN 
Sbjct: 380 GYRVIGLAGEAGVALSEADLDGPLVIVTGSEGSGLSMLTRKHCDQLVRIPLRGATPSLNA 439

Query: 266 SNAAAVALYITQNH 279
           S A A+ LY     
Sbjct: 440 SVATAMVLYEVARR 453


>gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 243

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 115/239 (48%), Gaps = 10/239 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
           ++ G + V  AL +  R I +++ +++ +     D           V+  P + ++K   
Sbjct: 4   YIVGRNAVKEALRSG-RSIQRIMVSEDKVKTGLADIVGLAKSQGIEVRPTPIKQMNK-YD 61

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+    + +    L  V         LL++ D V DPHN+GAI+R+A       
Sbjct: 62  LEVPHQGVIALVSAVQFKELGEVLQETNHEVPLLILTDGVEDPHNMGAIIRTAECVGATA 121

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  KR++   +A +AK+++GA+E IP +++ N+   ++++   GF  +G   +  + L 
Sbjct: 122 VLIPKRHNAPINATVAKTSAGAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRTLY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +        +++G EGKG+    +E    +  + M G + +LN S AAAV +Y      
Sbjct: 182 EADMTIPTVIVIGNEGKGISRVVKEACDFLVTIPMYGNLNSLNASVAAAVLMYEAVRQR 240


>gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1]
 gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4]
 gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1]
 gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4]
          Length = 268

 Score =  245 bits (626), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 109/236 (46%), Positives = 147/236 (62%), Gaps = 1/236 (0%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
               +++ LYG H VS AL N  R   +LLAT+NALARL  +A +  P   + V P  ID
Sbjct: 28  REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPEMVRPSAID 86

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +++G +AVHQGL  E  PL +P LDA+ +  LL+ LD + DPHN+GAI+R+A AF    I
Sbjct: 87  RLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 146

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +TT R+SP+ + VLAKSASG LEH+P + + NL +AL  +   GF  IGL SD+   L+ 
Sbjct: 147 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTTLDA 206

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   L+LGAEGKGLR +T E    +  +   G I++LNVSNAAA+ LY    
Sbjct: 207 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 262


>gi|116512750|ref|YP_811657.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108404|gb|ABJ73544.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 242

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTID 102
                +YG+H V+ ALN     + +L   ++   +      +        +   P   ++
Sbjct: 2   ENTDLIYGLHAVTEALN--GDLVNKLYVQEDLRGKNVEKIKELARIKKVNISWTPKTELN 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           K+  +  VHQG     +      L  +      +    +++LD + DPHN+G+I R+A A
Sbjct: 60  KLT-ENGVHQGFMARVSEFAYADLATLLPELAEKAEATILILDELTDPHNLGSIARTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II  K  +   + +  K+++GAL+H+P +R++NL+  L K+ S GF   G   D 
Sbjct: 119 TGVDAIIIPKHRAVGITPIAVKASTGALQHVPVVRVTNLSQTLDKLKSAGFWIFGTDMDG 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +     KIALI+G EG G+    ++    M  + M G +++LN S AA++ +Y  
Sbjct: 179 -TVYSKWNTKGKIALIIGNEGHGIGHNLKKQVDEMITIPMVGHVQSLNASVAASILMYEV 237

Query: 277 QNHF 280
             + 
Sbjct: 238 FRNR 241


>gi|325679612|ref|ZP_08159187.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
 gi|324108642|gb|EGC02883.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 8]
          Length = 257

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 13/260 (5%)

Query: 33  MQSFNQKSRHT-SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-- 89
           M+  N+K+++T +  E   + G + V  AL      I  +    +A   +     L    
Sbjct: 1   MRDKNEKTKNTENAAEEELILGRNPVIEALKADKL-IDIIFVNPDAKGSISLILKLARER 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142
             PVK V  Q +D +    A HQG+    A      +D +            +++ D + 
Sbjct: 60  DIPVKQVREQKLDFMA-HGAAHQGVIAIGACAEYVEVDDILKIAADKGEDPFIIICDEIE 118

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAI+R+A A    GII  KR S S +  + K+++GA   +P  R++NL  A+  +
Sbjct: 119 DPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVANLPAAVDDL 178

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G    G     +           + L++G+EG G+    +E    +  L M G I +
Sbjct: 179 KKQGIWIYGTDGAGEN-YSGVDMRGPVGLVVGSEGFGMGRLMKEKCDFLLSLPMAGKITS 237

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN S AA + +Y      AK
Sbjct: 238 LNASVAAGIFMYEVVRQRAK 257


>gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
 gi|254806447|sp|B2HJ20|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
 gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
          Length = 310

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 129/270 (47%), Gaps = 12/270 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A +R NH   K+ ++  ++       E   + G + V   L    PS  ++  L  + A 
Sbjct: 41  AHMRPNHPAAKRAKAQQRRPARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVE-AD 99

Query: 79  ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
            RL    +       P+  VP   +D++     +HQG+AL+  P      D +       
Sbjct: 100 ERLTESVSRAADSGIPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDT 158

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   +P  
Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVA 218

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT AL+     G + +GL +     ++    +D I +++G+EGKGL    ++T   
Sbjct: 219 RATNLTRALKDWADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDE 278

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M G  ++LN S AA V L       
Sbjct: 279 VVSVPMAGPTESLNASVAAGVVLAEIARQR 308


>gi|171058586|ref|YP_001790935.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170776031|gb|ACB34170.1| RNA methyltransferase, TrmH family, group 3 [Leptothrix cholodnii
           SP-6]
          Length = 244

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 9/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           N  L+G H V+  +      + ++      ++A  R            +     + + ++
Sbjct: 4   NSLLFGFHAVTVRVKTAPASVLEVHVDPARRDARMRQFVARVEAAGIRLIETDDKRLGQM 63

Query: 105 VGKEAVHQGLALET---APL--LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            G    HQG+       AP+  L   LDAV    L++VLD V DPHN+GA LR A     
Sbjct: 64  AGNTR-HQGVVARVNVLAPIHSLDDLLDAVEGPPLVLVLDGVTDPHNLGACLRVADGAGA 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K ++   +A +AK ASGA E +PY  ++NL   L ++     + IG S D+ + 
Sbjct: 123 HAVIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIRVIGTSEDATQS 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +     +  +A++LGAEG G+R  T++T   + H+ M G +++LNVS A+AV LY     
Sbjct: 183 IYDIDLSGPVAIVLGAEGPGMRQLTRKTCDELVHIPMRGAVESLNVSVASAVCLYEALRQ 242

Query: 280 F 280
            
Sbjct: 243 R 243


>gi|188579486|ref|YP_001922931.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           populi BJ001]
 gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           populi BJ001]
          Length = 269

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 110/236 (46%), Positives = 147/236 (62%), Gaps = 1/236 (0%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
               +++ LYG H VS AL N  R   +LLAT+NALARL  +A +  P   + V P  ID
Sbjct: 29  REGRDHVVLYGWHPVSQALANAGRHFHRLLATENALARL-KEAGIELPIEPELVRPSAID 87

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           K++G +AVHQGL  E  PL +P LDA+ +  LL+ LD + DPHN+GAI+R+A AF    I
Sbjct: 88  KLLGPDAVHQGLYAEAEPLAAPALDAMPDDALLLALDQITDPHNVGAIVRTAAAFGVTAI 147

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +TT R+SP+ + VLAKSASG LEH+P + + NL +AL  +   GF  IGL SD+   L+ 
Sbjct: 148 VTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRIGLDSDAGTSLDA 207

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   L+LGAEGKGLR +T E    +  +   G I++LNVSNAAA+ LY    
Sbjct: 208 VGPRRPAVLVLGAEGKGLRQRTTECCDLLVRIDATGAIRSLNVSNAAAITLYALTR 263


>gi|296136581|ref|YP_003643823.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
           K12]
 gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
           K12]
          Length = 242

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 9/238 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           LYG H V A L      +  +      ++A  +            +KT+  + +  + G 
Sbjct: 4   LYGFHAVGARLRAAPASVHAVYVDASRRDARMQQFLRKVEASGVELKTLSAERLTALAGT 63

Query: 108 EAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +  HQG+  +   L +       LDAV  + L++ LD V DPHN+GAILR+A A     +
Sbjct: 64  DR-HQGVVAQVDDLPTVHDVHAVLDAVEGAPLVLALDGVTDPHNLGAILRTADAAGVHLV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  +   +  +A+ ASGA E +PY+ ++NL  +L ++   G   +G    +   +  
Sbjct: 123 IAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMGTDEAATDDVYA 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   L++GAEG G+R   +ET   +  + M G +++LNVS AA V LY      
Sbjct: 183 AKWTQPAVLVMGAEGAGMRRLVRETCDQLLQIPMLGAVESLNVSVAAGVCLYEAVRQR 240


>gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 4b H7858]
 gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
 gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 4b H7858]
 gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
          Length = 251

 Score =  244 bits (625), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 13/246 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            I+K+VG    HQG+A + A      LD +             ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVG--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQN 278
           LY    
Sbjct: 239 LYEVYR 244


>gi|330686272|gb|EGG97884.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU121]
          Length = 248

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++L       +   D           V+TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIISGH-SINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDF 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A
Sbjct: 61  LS--TAPHQGVAALVAPYEYADFDQFLKQQQEKDGLSTVIILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I  KR S S +  +AK+++GA++H+P IR++NL   + ++ + GF   G  +++
Sbjct: 119 SGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKNNGFWVAGTEANN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 FR 240


>gi|184154739|ref|YP_001843079.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|183226083|dbj|BAG26599.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
          Length = 251

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 15/244 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVP 97
            T++  + F+ G H   AAL +    I ++   K    +A+A+L   A   H   +  VP
Sbjct: 2   KTNEENSEFIIGRHPAMAALKSDQE-INKVFIQKGLKTDAIAQLVKSAKERHLV-ISNVP 59

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
              +D++   +  HQG+AL  A     T+D +             ++LD + DPHN+G+I
Sbjct: 60  KTKLDQMTAGQ-NHQGVALAVAAYQYATVDDLFENAAQKDEEPFFLILDELADPHNLGSI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A    GII  KR S   ++V+AK+++GA+EH+P  R++NL    +++   G    
Sbjct: 119 LRTADAAGVHGIIIPKRRSVGLTSVVAKTSTGAIEHVPVARVTNLVQVAKELQKRGVWLF 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G          +      +AL++G EGKG+ P  ++T   M  + M G +++LN S AA+
Sbjct: 179 GTDMQG-TDCRRWDAKGAVALVIGNEGKGISPLLKKTCDEMLTIPMIGHVQSLNASVAAS 237

Query: 271 VALY 274
           + +Y
Sbjct: 238 LLIY 241


>gi|254450751|ref|ZP_05064188.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 238]
 gi|198265157|gb|EDY89427.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 238]
          Length = 263

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 96/252 (38%), Positives = 151/252 (59%), Gaps = 11/252 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFP-V 93
            ++++  +  E ++L+G+H V  AL NP+R+  + + TKNA  RL    D  L    P  
Sbjct: 10  KERNKRAAANETVWLFGIHAVRDALLNPAREKLRFVVTKNAFDRLGGAVDIGLKDGGPEP 69

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIG 148
           +   P+     +  ++VHQG ALE  PL    ++        N   +++LD V DPHN+G
Sbjct: 70  EMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCMGDGVNPPRVVLLDKVTDPHNVG 129

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AILRSA  F    +I   R++  E+  LAK+ASGA+E  PY+R+ NL DA+ ++ + G+ 
Sbjct: 130 AILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMERQPYLRVRNLADAIVELQAMGYL 189

Query: 209 TIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +GL  ++++ +EQ ++  +   IAL+LGAEG GLR KT+ET  ++  +   G   +LNV
Sbjct: 190 VLGLDGEAEQTIEQVVEGKRDRAIALVLGAEGPGLRDKTKETCDALVRIDFAGEFGSLNV 249

Query: 266 SNAAAVALYITQ 277
           SNAAAVALY+++
Sbjct: 250 SNAAAVALYVSR 261


>gi|315301171|ref|ZP_07872437.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
           F6-596]
 gi|313630458|gb|EFR98325.1| RNA methyltransferase, TrmH family, group 3 [Listeria ivanovii FSL
           F6-596]
          Length = 251

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   +       +    +       V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGVQKGVLKQVLASAKDRKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD + N+          ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVV--NGAHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR +   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            ++          +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DANGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLIHLPMRGKVTSLNASVAASIL 238

Query: 273 LYITQN 278
           LY    
Sbjct: 239 LYEVYR 244


>gi|239636929|ref|ZP_04677927.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
           L37603]
 gi|239597477|gb|EEQ79976.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus warneri
           L37603]
          Length = 248

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++L       +   D           V+TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIISGH-SINKILIQDGIKKQQINDILKNAKDQKLIVQTVPKSKLDF 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A
Sbjct: 61  LS--TAPHQGVAALVAPYEYADFDQFLKQQKEKDGLSTVIILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I  KR S S +  +AK+++GA++H+P IR++NL   + ++ S GF   G  +++
Sbjct: 119 SGVDGVIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLAKTIDELKSNGFWVAGTEANN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  +A+++G+EG+G+     +       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRDLEADMSLAIVIGSEGQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 FR 240


>gi|238923821|ref|YP_002937337.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238875496|gb|ACR75203.1| putative tRNA/rRNA methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|291524576|emb|CBK90163.1| rRNA methylase, putative, group 3 [Eubacterium rectale DSM 17629]
          Length = 255

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G + V  A  +     K+F L   ++   +        H   +  V  + +D++  +
Sbjct: 13  YIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPIKSITREARKHDAIINYVAKERLDQM-SE 71

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+   +A      +  +            +++LD + DPHN+GAI+R+A      
Sbjct: 72  TGKHQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAH 131

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR +   +  +AK+++GA+ + P  +++N+++ ++++   G   +         +
Sbjct: 132 GIIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCADM-GGTTM 190

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   I L++G EG G+    +E     A + M G I +LN S A  V  Y      
Sbjct: 191 YDLNLTGPIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVLAYEIVRQR 250

Query: 281 AK 282
            K
Sbjct: 251 LK 252


>gi|167629448|ref|YP_001679947.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
 gi|167592188|gb|ABZ83936.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
          Length = 256

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 116/242 (47%), Gaps = 14/242 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105
             L G   V  AL +  R I +L+  K A     R           P+  +    +D+ V
Sbjct: 11  DLLAGRQPVMEALKSG-RAINKLVVAKGAREGSIREILGMARDRGIPITELERTVLDREV 69

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+    AP+    ++ +            +++LD + DPHNIGA+LR+A    
Sbjct: 70  ---RHHQGIIAHVAPVAYVEVEEILEKAKAKGEPPFVLLLDGLEDPHNIGALLRTAEGAG 126

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  KR   + ++ +AK+++GA+E++P  R++NL   + ++   G   IG + D+ +
Sbjct: 127 AHGVIIPKRRGGAITSTVAKASAGAVEYVPIARVTNLVQTVGQLKKAGLWIIGSAMDAPR 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           P  ++     + LI+G+EGKG+ P  +E    +  + M G + +LN S A A+ +Y    
Sbjct: 187 PYFRQDFRGPVGLIVGSEGKGISPLLREHCDHLVSIPMGGKVDSLNASVAGALLMYERVR 246

Query: 279 HF 280
             
Sbjct: 247 QL 248


>gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|254803872|sp|A0PV26|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155
 gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 310

 Score =  244 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 129/270 (47%), Gaps = 12/270 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A +R NH   K+ ++  ++       E   + G + V   L    PS  ++  L  + A 
Sbjct: 41  AHMRPNHPAAKRAKAQQRRPARGRTDETETVLGRNPVLECLRAGVPSTALYVALGVE-AD 99

Query: 79  ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
            RL    +       P+  VP   +D++     +HQG+AL+  P      D +       
Sbjct: 100 ERLTESVSRAADSGIPILEVPRTDLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDT 158

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   +P  
Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVA 218

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT AL+     G + +GL +     ++    +D I +++G+EGKGL    ++T   
Sbjct: 219 RATNLTRALKDWADRGVRVVGLDAGGDTAIDDLDGSDPIVVVVGSEGKGLSRLVRQTCDE 278

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M G  ++LN S AA V L       
Sbjct: 279 VVSVPMAGPTESLNASVAAGVVLAEIARQR 308


>gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           Fw109-5]
          Length = 245

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 12/244 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YG++ V   L      + +L      T+ A               V++ P   +D++ 
Sbjct: 3   VVYGLNPVREVLRAGGEGLSELWLAEGGTRGAAFGELERLGRAAGAKVRSAPRAKLDRLA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G +  HQG+    A      ++ +           L++VLD V DPHN+GAI+RSA A  
Sbjct: 63  GTDR-HQGVVAMVADFRYAEVEDLLAAARASGRPPLVVVLDGVEDPHNLGAIIRSAHALG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  K  +   +  +AK+++GA+E  P  R++N++  L+ +   G  ++ L++D   
Sbjct: 122 AHGVVIPKDRAVGVTPAVAKASAGAVERCPVARVTNVSKTLEALKEAGIWSVALAADGDA 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           PL        IAL+LG+EG+GLRP  ++T    A + M G + +L+VS +AAVALY    
Sbjct: 182 PLGAVDLTGPIALVLGSEGEGLRPLVRKTCDHSARIPMSGDLDSLSVSASAAVALYEAAR 241

Query: 279 HFAK 282
              +
Sbjct: 242 QRGR 245


>gi|81300928|ref|YP_401136.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
           7942]
 gi|81169809|gb|ABB58149.1| RNA methyltransferase TrmH, group 3 [Synechococcus elongatus PCC
           7942]
          Length = 519

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 14/270 (5%)

Query: 25  RNHRDYKKMQSFNQKSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80
           R  RD +  +  N          ++  +YG H V AAL   +R + ++  T         
Sbjct: 217 RPSRDRELNREVNTSPAGDQEATDHELIYGRHAVLAALQ-GNRTLNRIWVTPRLRYESTF 275

Query: 81  -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132
               DA       V  VP + I ++    AVHQG+A + AP     L  +          
Sbjct: 276 LELIDAAKAGGAVVDEVPVERIRQLTD-GAVHQGIAAQVAPYPYQELSDLIAQAKAATTD 334

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V D + DPHN+GAI+R+A A    G++  +R +   +A +AK A+GALE  P  R+
Sbjct: 335 PVIVVADGITDPHNLGAIIRTAEALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARV 394

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  AL+++   GF   G + ++K+ + +   +  + L++G+E +GL   T+E    + 
Sbjct: 395 VNLNRALEELKDAGFWIYGAAGEAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLI 454

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + + G   +LN S AA + LY       +
Sbjct: 455 SIPLRGKTNSLNASVAAGMVLYEVSRQRQQ 484


>gi|254441653|ref|ZP_05055146.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 307]
 gi|198251731|gb|EDY76046.1| RNA methyltransferase, TrmH family, group 3 [Octadecabacter
           antarcticus 307]
          Length = 291

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 101/275 (36%), Positives = 152/275 (55%), Gaps = 13/275 (4%)

Query: 17  DSHYAKLRRNHRDYKKMQSF--NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           D  +       RD KK       ++++  +  E ++L+G+H V  AL NP R+  + + T
Sbjct: 16  DGRHEGANAKDRDMKKPTWVVDKERNKRAAANETVWLFGIHAVRDALLNPVREKLRFVVT 75

Query: 75  KNALARL--DWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129
           KNA  RL       L    P  +   P+     +  ++VHQG ALE  PL    ++    
Sbjct: 76  KNAFDRLGDAVSIGLKDGGPEPEMCEPRNFAAPIDPQSVHQGAALEVKPLDWGKIEDRCM 135

Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
               N   +++LD V DPHN+GAILRSA  F    +I   R++  E+  LAK+ASGA+E 
Sbjct: 136 GDGVNPPRVVLLDKVTDPHNVGAILRSAEVFGAQAVIAMNRHAAPETGALAKTASGAMER 195

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPK 243
            PY+R+ NL DA+ ++   G+  +GL  ++++ +EQ +       IAL+LGAEG GLR K
Sbjct: 196 QPYLRVRNLADAIVELQGMGYMVLGLDGEAEQTIEQVVDGKTDRAIALVLGAEGPGLRDK 255

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+ET  ++  +   G   +LNVSNAAAVALY T++
Sbjct: 256 TKETCDALVKIDFAGEFGSLNVSNAAAVALYATRS 290


>gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina
           MBIC11017]
          Length = 309

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 132/283 (46%), Gaps = 21/283 (7%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
            S K  H            +++S +++   + + +   +YG H+V +AL +  R + ++ 
Sbjct: 24  SSAKKPHRQSTSSRPPQKPRIRSKDKEPAQSEEEQGDLIYGRHSVLSALEH-QRSLNRVW 82

Query: 73  ATKNALARLDWDANL--------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
                ++RL +D                +  V  + ++++  ++A HQG+A + A     
Sbjct: 83  V----VSRLRYDPRFHSLLNQAKSQGTIIDEVDHRRLNQLT-QQATHQGIAAQVAAYEYL 137

Query: 125 TL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            +       +A     +++  D + DPHN+GA++R+A A    G+I  +R +   ++V+A
Sbjct: 138 DISTLIEQANAATPKPVIIAADSITDPHNLGAMIRTAEALGAQGVIIPQRRAAGITSVVA 197

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K A+GALE +   R+ NL   L+++   GF   GLS+ + + +      +   L++GAEG
Sbjct: 198 KVATGALETLAIARVVNLNQGLEQLKKAGFWIYGLSTSAPQSIHTVTFTEPTVLVIGAEG 257

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            GL   TQ     M  + + G   +LN S A  +ALY      
Sbjct: 258 PGLSVSTQHHCDQMVSIPLQGKTASLNASVATGMALYEVYRQR 300


>gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium
           sibiricum 255-15]
          Length = 254

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTID 102
               FLYG + V  AL +  R++ +L   +      L     +     V+T  VP   + 
Sbjct: 7   EGQDFLYGRNPVLEALRSG-REMNKLFIQEGQQKGPLAVIHAMAKEAGVQTQIVPRSKLH 65

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + G +  HQG+    A      LD +         + L+++LD + DPHN+G+ILR+A 
Sbjct: 66  GLTGSD-NHQGVVAAVAAYEYAELDDIFALAEKKDETPLMILLDELEDPHNLGSILRTAD 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    GII  KR S   + V+AK+++GA+EHIP +R++NLT  ++ +   G   +G  + 
Sbjct: 125 AVGAHGIIIPKRRSVGLTQVVAKASTGAIEHIPVVRVTNLTRTMEDLKKKGIWFVGTDAR 184

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                        + +++G+EGKG+    +E    + HL M G + +LN S AA++ LY 
Sbjct: 185 ESDDYRTLDGTMPLGIVIGSEGKGMSRLVREKCDFLVHLPMAGHVTSLNASVAASLLLYE 244

Query: 276 TQN 278
              
Sbjct: 245 VYR 247


>gi|99034724|ref|ZP_01314656.1| hypothetical protein Wendoof_01000527 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 254

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 9/243 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97
           + +   EN +LYG HT  +AL N +R+  +LL T+N     + +           V+ V 
Sbjct: 2   KSSKTNENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYANSKGIKVRLVE 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + ++ ++ K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR
Sbjct: 62  NKILNDVLPKGANHQGIALNVAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           ++  F+ D ++    +SPSE+A +AK+ASGAL+ IP I ++N+   +Q +   G+   G 
Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIIPLIYVTNIVKTMQYLKKVGYWCYGF 181

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             ++K+ +++      K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+
Sbjct: 182 DCNAKENIDEIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241

Query: 272 ALY 274
            LY
Sbjct: 242 GLY 244


>gi|89901014|ref|YP_523485.1| RNA methyltransferase TrmH [Rhodoferax ferrireducens T118]
 gi|89345751|gb|ABD69954.1| RNA methyltransferase TrmH, group 3 [Rhodoferax ferrireducens T118]
          Length = 256

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 111/250 (44%), Gaps = 20/250 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   D        +       + K+ G
Sbjct: 6   VLFGFHAVGVRLKTAPQSIIEIYFEPTRRDARMRQFLDKANEAGARLIEADGIRLAKLCG 65

Query: 107 KEAVHQGLALETAPLLS-PTLDAV---------------RNSQLLMVLDHVNDPHNIGAI 150
               HQG+A     L    +LD +               R   L++VLD V DPHN+GA 
Sbjct: 66  GHG-HQGVAARVHELAQVKSLDELLEQLEAAQTDRPPTEREEALILVLDGVTDPHNLGAC 124

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR A       +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       I
Sbjct: 125 LRVADGAGVHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTLNELKERNIWII 184

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G S  + K + Q      +AL+LGAEG G+R  T +T   +  + M G +++LNVS A+ 
Sbjct: 185 GTSDVAPKTIYQADLKGPVALVLGAEGDGMRALTAKTCDELVSIPMRGAVESLNVSVASG 244

Query: 271 VALYITQNHF 280
           V LY      
Sbjct: 245 VCLYEALRQR 254


>gi|209523281|ref|ZP_03271837.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
           CS-328]
 gi|209496432|gb|EDZ96731.1| RNA methyltransferase, TrmH family, group 3 [Arthrospira maxima
           CS-328]
          Length = 304

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/277 (29%), Positives = 127/277 (45%), Gaps = 20/277 (7%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           K    +K   + R+ K      ++ R      T  PE   +YG HTV AAL N  R + +
Sbjct: 17  KVKPSSKPPHSPREDKPAIHPRRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNR 75

Query: 71  LLA-----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           +       +      L  +A       V     Q +D+I  + A HQG+  +  P     
Sbjct: 76  VWVISQLRSDTRFQPLLQEAKAKGAI-VDGASYQRLDQIT-RGANHQGIVAQVTPYKYWD 133

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L  +        +  +L+ +D + DPHN+GAI+R+A A    G+I  +R +   +A + K
Sbjct: 134 LTTLITQAKSANSQPVLVAVDGITDPHNLGAIVRTAEAIGAQGLILPQRRAVGINATVMK 193

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A+GALE  P  R+ NL  +L ++ S GF   G  +   +PL        I L++G+EG+
Sbjct: 194 VAAGALETFPVARVINLNRSLTELKSAGFWIYGTVAGEFQPLYNANLTGAIVLVVGSEGE 253

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           GL     E    +  + + G I +LNVS A  +ALY 
Sbjct: 254 GLSHAIAENCDVLLSIPLQGTIPSLNVSVATGMALYE 290


>gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. RS9917]
 gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. RS9917]
          Length = 504

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 13/252 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVK 94
            S     P +  L+G H   AAL    R I ++  T +  +   +             V+
Sbjct: 171 SSHAAEPPADDLLWGRHATQAALE-AGRPIHRIWCTSDMRSAPRFLGLLREAKASGVLVE 229

Query: 95  TVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            V    + +I G  AVHQG+AL+TA       P L     ++    LL+ LD + DPHN+
Sbjct: 230 EVTWARLGQITG-GAVHQGIALQTAAAETLDLPTLIEGCASLGEPPLLLALDGLTDPHNL 288

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RSA A    G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G+
Sbjct: 289 GAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLESLKDAGY 348

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + +GL+ +    L +      + ++ G+EG GL   T+     +  + + GI  +LN S 
Sbjct: 349 RVVGLAEEGDLTLAEADLEGPLVVVTGSEGDGLSLLTRRHCDQLIRIPLRGITPSLNASV 408

Query: 268 AAAVALYITQNH 279
           A A+ LY     
Sbjct: 409 ATALCLYEVARR 420


>gi|123968445|ref|YP_001009303.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           AS9601]
 gi|123198555|gb|ABM70196.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           AS9601]
          Length = 335

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 143/276 (51%), Gaps = 19/276 (6%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIF 69
           KDS ++ L+R    +K     + K+   +Q  N       +++G H+V  AL +  R I 
Sbjct: 57  KDSTFSSLKRKKPTFKSNIGLHNKNPDINQEFNNKKNFDDWIWGKHSVYEAL-SSERAIN 115

Query: 70  QLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           ++  T    +   +   L         ++ V    + ++    A HQG+AL+ A   + +
Sbjct: 116 RIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLT-YGASHQGIALQLACSRTIS 174

Query: 126 LDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L+ + +       + +++ LD + DPHN+GAI+RSA AF C GII  +R S   +  +AK
Sbjct: 175 LEQLIDFSRHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAK 234

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A+GALEH+   R+ NL  AL+++   GF  +GLS D +  +   ++   + +I+G+E K
Sbjct: 235 VAAGALEHVQVSRVVNLNRALEELKKNGFIVVGLSGDGQLSISNFLEKAPLVVIVGSEEK 294

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+   TQ+    +  + + G   +LN S AAA++L+
Sbjct: 295 GISLLTQKKCDFLLSIPLRGKTSSLNASVAAAISLF 330


>gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium
           ATCC 15444]
          Length = 269

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 96/264 (36%), Positives = 149/264 (56%), Gaps = 9/264 (3%)

Query: 19  HYAKLRRNHRDYKKMQSFNQK-SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           H  +        +  +  NQ+ SR   +   ++L+G H V AAL NP+RK   LLAT+NA
Sbjct: 5   HPKRPPNTDVATRPGRPENQRFSRRDEEGGPVWLWGTHAVMAALANPARKFHTLLATENA 64

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLL 135
             +L            +    + ID  +   AVHQG+AL   PL    L+ V    +  +
Sbjct: 65  AQKLP-----AGVISPQLATAKEIDNRLPPGAVHQGIALRADPLEEAILEDVIAAGATRI 119

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            VLD V+DPHN+GAI RSA AF  +G++   R +P  + ++AKSA+GA+E +  IR  N+
Sbjct: 120 AVLDQVSDPHNLGAIFRSAAAFGFEGLVLQTRNAPPITGIVAKSAAGAIETVTEIRAVNI 179

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHL 254
             AL+++    F T+GL+ +S + L++ +K   K+A++LGAEG GLRP   +  + +A +
Sbjct: 180 ARALEQLAEADFHTVGLAGESTRSLDEAVKGAAKVAIVLGAEGSGLRPAVAKACSELARI 239

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            +   +++LNVSNAAA+A Y    
Sbjct: 240 PIAAQMESLNVSNAAAIAFYEASR 263


>gi|39996562|ref|NP_952513.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983443|gb|AAR34836.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
           sulfurreducens PCA]
 gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 245

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 12/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           +   LYG+++V  AL   SR+ F+L  ++    R              PV+T   + + +
Sbjct: 2   KEEILYGINSVMEALR-GSRRAFELFVSRETHDRRTEKLLAFAAERGVPVRTRDKRDLAR 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+AL         L+ +           L++VLD + DPHN+GA++RSA  
Sbjct: 61  LCGTD-HHQGVALRVEGFAYAALEDIIASWQSSGEPGLILVLDGIQDPHNLGALIRSAAC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  +   +A + K ++GA E IP  +++N+  AL+ +   GF   G +  +
Sbjct: 120 AGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQVTNVVQALETLKEEGFWAFGTADSA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L        + +++G EG+G+RP  ++    +  + + G + +LN S A  V L+  
Sbjct: 180 ASSLYSHDLTGNVVIVIGGEGEGVRPLVRKKCDFLVAIPLKGGVSSLNASVAGGVVLFEV 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|121281880|gb|ABM53513.1| putative RNA methyltransferase TrmH [uncultured bacterium CBNPD1
           BAC clone 67]
          Length = 319

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 113/284 (39%), Positives = 163/284 (57%), Gaps = 11/284 (3%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQP---------ENLFLYGVHTVS 58
            S++ +   D      R   R  +K  +F  KSR   +P         +   LYG+H+V 
Sbjct: 4   DSKRPYHPLDRQPKPAREGSRMGEK-PAFKDKSRFAPKPKAPKPRLPDDTDVLYGMHSVK 62

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
            A  NP R+  +++AT+NA+ RL  D  +  P   + V P+ I +++  +AVHQGL +E 
Sbjct: 63  EAFANPRRRFRRIVATENAVQRLTED-GVNLPLAPELVKPEAIGRLLTPDAVHQGLYVEA 121

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L    L  +   ++++ LD V DPHN+GAILRSA AF   G+I T R+SP  + VLAK
Sbjct: 122 ERLPLLPLGKLPRDRIILALDQVTDPHNVGAILRSAAAFDVGGVIVTHRHSPEITGVLAK 181

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +ASGALEH+P   + NL  AL  +   GF  IGL S++ + +        I L+LGAEG+
Sbjct: 182 AASGALEHVPMAGVQNLARALTTLKDEGFAVIGLDSEAPEKMGDLPLKLPIVLVLGAEGR 241

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GLRP T+E  + +A L +PG IK+LNVSNAAA++LY  Q    +
Sbjct: 242 GLRPSTRELCSHLARLELPGAIKSLNVSNAAAISLYAVQQAITR 285


>gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 302

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 126/239 (52%), Gaps = 9/239 (3%)

Query: 48  NLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDK 103
           +  + G + V   L+   P+  +F  + TKN   RL    N+      P+  V  Q +D+
Sbjct: 55  DELVVGRNPVIECLHAKVPAVAMFVAIGTKN-DQRLVEAVNIAASRSIPIVEVSKQKLDE 113

Query: 104 IVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           + G   +HQG+ L+        L D + +  +++ LD++ DP N+GA++RS  AF  DG+
Sbjct: 114 MTG-NGLHQGIGLQIPEYHYADLEDLITHDGMVVFLDNITDPRNLGAVIRSVAAFGADGV 172

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R S S +AV  +S++G    +P  +++N+T AL++    G+Q IGL +  +   + 
Sbjct: 173 VIPERRSASVTAVTWRSSAGTAARVPVAKVTNMTRALKQFQEAGYQAIGLDAGGEHTHDS 232

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
                 + +++G+EGKGL    +ET  ++  + M G +++LN S AA V L  +  Q  
Sbjct: 233 YDGTGPVVIVVGSEGKGLSRLVKETCDTIVTIPMEGWVESLNASVAAGVVLAEFARQRR 291


>gi|126740104|ref|ZP_01755794.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           SK209-2-6]
 gi|126718923|gb|EBA15635.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           SK209-2-6]
          Length = 262

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 97/261 (37%), Positives = 150/261 (57%), Gaps = 8/261 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           + +  KK Q   +K ++     +N++L+G+H V  AL NP+R+  +L+ T NA  +L+ D
Sbjct: 2   SKKPTKKPQWVIEKEQNKKAGVDNVWLFGLHAVRDALMNPNREKLRLIVTLNAQNKLE-D 60

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHV 141
           A        + V P+  +  +   +VHQG ALE  PL   +L           +++LD V
Sbjct: 61  AIAAAGITPEVVDPRRFNAPLDPNSVHQGAALEVKPLNWGSLAENCIGAEVPRVILLDRV 120

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+GAILRSA       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL D + +
Sbjct: 121 TDPHNVGAILRSAEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITE 180

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           + + GF  +GL  +++  +E  ++      +AL+LGAEG GLR KT+ET   +  +   G
Sbjct: 181 LQNMGFVVLGLDGEAEDTIESCLQGRKDLPVALVLGAEGPGLRQKTKETVDHLVKIDASG 240

Query: 259 IIKALNVSNAAAVALYITQNH 279
              +LNVSNAAA+ALY ++  
Sbjct: 241 GFGSLNVSNAAAIALYASKER 261


>gi|222152119|ref|YP_002561279.1| hypothetical protein MCCL_1876 [Macrococcus caseolyticus JCSC5402]
 gi|222121248|dbj|BAH18583.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 263

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 121/240 (50%), Gaps = 12/240 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKI 104
           +  + G H V +A+ +    I ++L  +           +        V+TVP   +D +
Sbjct: 21  DEIIVGRHAVKSAVTSGHE-INKVLIQEGINKSQISNLLNLCKEKKIVVQTVPKSKLDHL 79

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFS 158
              +  HQG+    +P     L+   +++       +M+LD + DPHN+G+I+R+A A  
Sbjct: 80  S--DVPHQGVLAMISPYEYTELEDFLSNKASDKLSTIMILDGLEDPHNLGSIIRTADAIG 137

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DGI+  KR S S +  + K+++GA+EH+P +R++N+  A+ K+   G+   G  +    
Sbjct: 138 IDGIMIPKRRSVSLNQTVVKASTGAVEHVPVMRVNNINQAIDKLKDAGYWVAGTDAKQSV 197

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +   +  +A+++G+EG+G+    +E    + HL M G + +LN S AA++ +Y    
Sbjct: 198 DYRKMTADIDLAIVIGSEGEGMSRLVKEKCDFLIHLPMVGHVNSLNASVAASLLMYEVYR 257


>gi|291528003|emb|CBK93589.1| rRNA methylase, putative, group 3 [Eubacterium rectale M104/1]
          Length = 255

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G + V  A  +     K+F L   ++   +        H   +  V  + +D++  +
Sbjct: 13  YIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPIKSITREARKHDAIINYVAKERLDQM-SE 71

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+   +A      +  +            +++LD + DPHN+GAI+R+A      
Sbjct: 72  TGKHQGVIAVSAAYEYAEVSDILENAERKGEPPFIIILDGIEDPHNLGAIIRTANQAGAH 131

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR +   +  +AK+++GA+ + P  +++N+++ ++++   G   +         +
Sbjct: 132 GIIIPKRRAVGLTPTVAKTSAGAINYTPVAKVTNISNTIKELKEKGMWFVCADM-GGTTM 190

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   I L++G EG G+    +E     A + M G I +LN S A  V  Y      
Sbjct: 191 YDLNLTGPIGLVIGNEGDGVSKLVKENCDMTASIPMVGDIDSLNASVATGVFAYEIVRQR 250

Query: 281 AK 282
            K
Sbjct: 251 LK 252


>gi|300769739|ref|ZP_07079621.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300492647|gb|EFK27833.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 261

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 15/257 (5%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPF 91
            F   +    Q    F+ G H   AA+ +   +I ++       A +  D          
Sbjct: 4   GFPVSNNEQDQTAADFVIGRHPAMAAIKSDQ-QINKVFIQSGLQADVLNDIAKIAKKRNL 62

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            V+ VP Q +D++    A HQG+A+  A     T+D +         +   ++LD++ DP
Sbjct: 63  IVQYVPKQKLDRLTD-NANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDP 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G+I+R+A A    GII  KR +   ++ +AK+++GA+EH+   R++NL   ++++  
Sbjct: 122 HNLGSIMRTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQE 181

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G    G   +      Q   +  + LI+G EGKG+ P  +++   M  + M G +++LN
Sbjct: 182 AGLWIFGTDMNG-TDYRQWDASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLN 240

Query: 265 VSNAAAVALYI--TQNH 279
            S AA++ +Y   T  H
Sbjct: 241 ASVAASLLIYQGYTSRH 257


>gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           nigrificans DSM 574]
          Length = 252

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/243 (27%), Positives = 117/243 (48%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHP--FPVKTVPPQTIDKI 104
           +  + G + V  AL    R I +L+  K  A   L     L      P++TV    +DK+
Sbjct: 11  SEIIAGRNPVREALR-AGRPINKLVMAKGTAAGPLSEIIKLAREKNIPIQTVDKTHLDKL 69

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQG+    AP     ++ +            +++LD +NDPHN+GAI+R+  A 
Sbjct: 70  VA-GTPHQGIIAYAAPKGYVDIEDILSVAKERGQDPFIVMLDEINDPHNLGAIIRTVDAA 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  +R + + +A +A++++GA+E++P  R++NL   ++++   G   +G   D  
Sbjct: 129 GAHGIIIPRRRAVALTATVARASAGAVEYVPVARVTNLDQTIRQLKELGLWVVGADMDGP 188

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +          + L++G EGKGL    +E    +  L M G + +LN S AAA+ +Y   
Sbjct: 189 EVYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGHVGSLNASVAAALLVYEVI 248

Query: 278 NHF 280
              
Sbjct: 249 RQR 251


>gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Prochlorococcus marinus str. MIT 9313]
 gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
          Length = 535

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 20/293 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-------FLYGVHTV 57
           S+++S++    + S   + R   R     +     S    + E          L+G H  
Sbjct: 127 SRRRSDERLGRRPSLGERSRPADRQLPSKRFDPSTSDRVPEAETFGPAAADDLLWGRHAS 186

Query: 58  SAALNNPSRKIFQLLATKN--ALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQG 113
            AAL    R I ++  T +  +  R              V+ V    + ++ G  AVHQG
Sbjct: 187 QAALE-AGRPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTG-GAVHQG 244

Query: 114 LALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           + L+TA   +  L ++         S LL+ LD + DPHN+GAI+RSA A    G++  +
Sbjct: 245 IVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQ 304

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ IGL+ +    L     +
Sbjct: 305 RRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLD 364

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + ++ G+E +G+   T+     +  + + G+  +LN S A A+ LY     
Sbjct: 365 GPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARR 417


>gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium
           praevalens DSM 2228]
          Length = 246

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL    RKI ++   +   A++  D          P+  +  Q +++    
Sbjct: 4   IEGRNPVYEALK-GKRKIHRIFIQEEITAKIIEDILELAAEKNIPISRISSQKLNESAQS 62

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+  E   L S  L+ V           L+++LD + DPHN GAI+R+A A   D
Sbjct: 63  HA-HQGVIAEADALESYQLEDVIEIKAQKDGDSLVVILDEIKDPHNFGAIIRTAYAAGAD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  +R +   + V+ K+A+GA EH+P +++SN+  A++ +    F   G  + + +  
Sbjct: 122 AVVYQERRAVGITPVVLKAAAGAAEHLPLVQVSNINYAIRDLKEANFWIAGADAAADQTH 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      I L++G+EG GLR   +E    +  + M G + +LN S AA+V +Y      
Sbjct: 182 FEADFGGSIGLVIGSEGSGLRRLVRENCDFLVKIPMSGKLGSLNASVAASVIIYEIFRQR 241

Query: 281 AK 282
            K
Sbjct: 242 GK 243


>gi|170698709|ref|ZP_02889775.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           IOP40-10]
 gi|171317519|ref|ZP_02906709.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MEX-5]
 gi|170136413|gb|EDT04675.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           IOP40-10]
 gi|171097348|gb|EDT42193.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MEX-5]
          Length = 247

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +     LS  LD ++   LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWVIGTSDDASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|42520767|ref|NP_966682.1| RNA methyltransferase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410507|gb|AAS14616.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 254

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 136/243 (55%), Gaps = 9/243 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97
           + +   EN +LYG HT  +AL N +R+  +LL T+N     + +           V+ V 
Sbjct: 2   KSSKTNENFWLYGKHTCMSALKNKNRRCIELLVTENFYREHEKEIKQYANSKGIKVRLVE 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + ++ ++ K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR
Sbjct: 62  NKILNDVLPKGANHQGIALNAAPILYNLSIEEVAESSNDSSTIVILDQVTDTHNIGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           ++  F+ D ++    +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G 
Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 181

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             ++K+ +++      K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+
Sbjct: 182 DCNAKENIDEIKSFEKKRVIIFGSEEKGMRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241

Query: 272 ALY 274
            LY
Sbjct: 242 GLY 244


>gi|304436602|ref|ZP_07396571.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370298|gb|EFM23954.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 272

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L G H +  A+    R I ++L   N          D    H   V TV    +D +V 
Sbjct: 27  ILAGRHAIIEAIK-AGRGINRILLADNVRGGGVNELRDLAREHGITVDTVGRSKLDALVS 85

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           ++  HQG     AP+    ++ +           LL++LD + DP N+GA+LR+A A   
Sbjct: 86  QDVRHQGAVAYVAPVAYAAVEEIIAGARARGEDPLLLLLDGIEDPQNLGALLRTADAAGV 145

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GI+  +R+S   +  +A+ ++GALE++P  RI N+   ++ +   GF   G     ++ 
Sbjct: 146 HGILLPRRHSVPLTETVARVSAGALEYVPVARIGNIAQTMRALKEQGFWIAGADMSGEET 205

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +       + L++G+EG+G+   T++       L M G I +LN S A A+ +Y  Q  
Sbjct: 206 YDHANLTGALVLVIGSEGRGMSRLTRDLCDFTVRLPMVGKINSLNASVAGAILMYEAQRQ 265

Query: 280 F 280
            
Sbjct: 266 R 266


>gi|322436781|ref|YP_004218993.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX9]
 gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX9]
          Length = 263

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 15/247 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNA-------LARLDWDANLPHPFPVKTVPPQTI 101
             LYG+H V  A+ +  R++  +L +++        L +L     L     V   P   +
Sbjct: 2   EVLYGLHPVEEAIRSGGRRLEYVLISRDRRDKGDDRLTKLVELCKLA-GVRVSIEPKDQL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAV 155
            ++ G +A HQG            ++ +       + +  + LD V DPHN+GA+LRSA 
Sbjct: 61  TRVAGTDA-HQGAVAAVRERQFLAIEDLLAAKGNFDKRFFLALDGVEDPHNLGALLRSAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               DG++   R S   S V+AK+++GA EH+   R++NL  +L++M       +GL   
Sbjct: 120 GAGVDGVVLPDRRSAPLSGVVAKTSAGASEHVKIARVTNLVRSLEQMKRANIWVLGLDER 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                     N    L+LG+EG GL   T++T   +  + M G + +LNVS A AV +Y 
Sbjct: 180 GTPDYTAFDFNSDCVLVLGSEGTGLHDLTKKTCDHLLRIPMAGSVSSLNVSVAGAVVMYE 239

Query: 276 TQNHFAK 282
                ++
Sbjct: 240 ALRQRSQ 246


>gi|107022620|ref|YP_620947.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia AU
           1054]
 gi|116689569|ref|YP_835192.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|105892809|gb|ABF75974.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116647658|gb|ABK08299.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia cenocepacia
           HI2424]
          Length = 247

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +     LS  LD +    LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|257067130|ref|YP_003153386.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           DSM 20548]
 gi|256799010|gb|ACV29665.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus prevotii
           DSM 20548]
          Length = 234

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG   V   L+    K+++    K    L     D        +  V  +  DKI   +
Sbjct: 4   IYGRKPVLDTLDTDI-KVYKAYILKQNSKLVDKIIDKLNQKNIEISFVDKRFFDKI---D 59

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+ LE       +L+ + +S  L++LD + DPHN+GAI+RSA +F  D +I  +R 
Sbjct: 60  MNHQGVMLEVESFKYSSLEDLSDSSRLIILDKIEDPHNLGAIIRSAESFGFDAVIIPERR 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S ++ + K+++GA+ +I  +R++NLT  ++ +   GF   GL+ ++   +       K
Sbjct: 120 SASVTSTVYKTSAGAINNIKVVRVTNLTRTIKDLKDKGFWIYGLAGEAHSDISHADLRGK 179

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + L++G EG+G+    +E    + ++ M G + +LN S AAA+++Y     
Sbjct: 180 VGLVVGNEGEGISRLVRENCDMLINIPMLGRVNSLNASVAAAISMYELLRQ 230


>gi|16799350|ref|NP_469618.1| hypothetical protein lin0273 [Listeria innocua Clip11262]
 gi|16802287|ref|NP_463772.1| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e]
 gi|47097641|ref|ZP_00235161.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|226222870|ref|YP_002756977.1| Conserved hypothetical proteins like to B. subtilis YacO protein
           [Listeria monocytogenes Clip81459]
 gi|254825715|ref|ZP_05230716.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254828701|ref|ZP_05233388.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254831934|ref|ZP_05236589.1| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S]
 gi|254900578|ref|ZP_05260502.1| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161]
 gi|254913471|ref|ZP_05263483.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932460|ref|ZP_05265819.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254937948|ref|ZP_05269645.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|254991759|ref|ZP_05273949.1| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL
           J2-064]
 gi|255022535|ref|ZP_05294521.1| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL
           J1-208]
 gi|255027363|ref|ZP_05299349.1| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL
           J2-003]
 gi|255520315|ref|ZP_05387552.1| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL
           J1-175]
 gi|284800536|ref|YP_003412401.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
 gi|284993722|ref|YP_003415490.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
 gi|290892618|ref|ZP_06555611.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|16409606|emb|CAD00768.1| lmo0241 [Listeria monocytogenes EGD-e]
 gi|16412702|emb|CAC95506.1| lin0273 [Listeria innocua Clip11262]
 gi|47013985|gb|EAL04998.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|225875332|emb|CAS04029.1| Conserved hypothetical proteins like to B. subtilis YacO protein
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258601106|gb|EEW14431.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258610557|gb|EEW23165.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|284056098|gb|ADB67039.1| hypothetical protein LM5578_0283 [Listeria monocytogenes 08-5578]
 gi|284059189|gb|ADB70128.1| hypothetical protein LM5923_0282 [Listeria monocytogenes 08-5923]
 gi|290557927|gb|EFD91448.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|293584016|gb|EFF96048.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293591479|gb|EFF99813.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293594959|gb|EFG02720.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|328476082|gb|EGF46791.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 220]
 gi|332310652|gb|EGJ23747.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           Scott A]
          Length = 251

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD +             ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQN 278
           LY    
Sbjct: 239 LYEVYR 244


>gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus
           flavefaciens FD-1]
          Length = 254

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 9/252 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++   + +     ++G + V  AL + +      +        L           +K  
Sbjct: 2   EKEKNFSDERSEDIIFGRNPVIEALKSDANLDCIYICGSGGSLNLIRKLAKDKGVVIKDA 61

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149
             + + ++ G  A HQG+A   A     +++ +            +++ D + DPHN+GA
Sbjct: 62  QEKKLSQLSG-GASHQGVAAVGACGEYVSVEDILAVSRNKGTKPFIIICDEIEDPHNLGA 120

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A     DGII  KR S S +A + K+++GA  ++P  R+SNL   +  +   G   
Sbjct: 121 IIRTAETSGADGIIIPKRRSASLNATVFKTSAGAANYVPVARVSNLASCIDMLKENGVWI 180

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G  +   +   Q       AL++G+EG G+    Q+    M  L M G I +LN S AA
Sbjct: 181 YGTDASGTE-YTQTDFTGSCALVIGSEGFGISKLIQKKCDFMIKLPMLGKINSLNASVAA 239

Query: 270 AVALYITQNHFA 281
            + +Y      +
Sbjct: 240 GIFMYEILRQRS 251


>gi|163746955|ref|ZP_02154312.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380069|gb|EDQ04481.1| RNA methyltransferase, TrmH family, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 258

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/247 (38%), Positives = 146/247 (59%), Gaps = 7/247 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++ +     + ++L+G+H V  AL NP+R+  QL+ T NA A+L+ DA        + V
Sbjct: 10  KEQDKKADAAQTVWLFGLHAVRDALMNPNREKLQLMVTPNAQAKLE-DAIAEAGIAPEVV 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
            P+     +   +VHQG  LE  PL    L+ V     +  L++LD V DPHN+GAILRS
Sbjct: 69  DPRKFRPPLDPNSVHQGAVLEVKPLNWGGLEDVAIGDTAPRLLLLDRVTDPHNVGAILRS 128

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I TK +S  E+  LAK+ASGALE  PY+R+ NL DA++ +   G+  +GL 
Sbjct: 129 AEVLGASAVIGTKHHSAPETGALAKTASGALERQPYLRVRNLADAIRALQGMGYLVLGLD 188

Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++ + +E  +   ++  +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAAA
Sbjct: 189 GEATQTIETAVEGRRDRPVALVLGAEGPGLREKTRETVDALVRIDAAGGFGSLNVSNAAA 248

Query: 271 VALYITQ 277
           +ALY ++
Sbjct: 249 IALYASR 255


>gi|116333232|ref|YP_794759.1| rRNA methylase [Lactobacillus brevis ATCC 367]
 gi|116098579|gb|ABJ63728.1| rRNA methylase [Lactobacillus brevis ATCC 367]
          Length = 255

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 15/247 (6%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVK 94
           K    ++  N F+ G H   AAL +  + I ++         AL  +   A   H   + 
Sbjct: 2   KPVENNEENNDFVIGRHPAVAALRS-QQTINKVFLQSGLKAEALDEIRQLAKKRHLV-IS 59

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147
            VP Q +D ++     HQG+AL  +     T+D +         +   +VLD V DPHN+
Sbjct: 60  EVPKQKLD-LLTDHQNHQGVALGVSAFAYATIDDLFDRAAAAGEAPFFLVLDGVEDPHNL 118

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A    GII  KR +   ++V+AK+++GA+E +P  R++NL + ++++   G 
Sbjct: 119 GSILRTADASGVHGIIIPKRRAVGLTSVVAKTSTGAIERVPVARVTNLVNTVRELKDRGV 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G    +             ALI+G EGKG+    +ET   M  + M G +++LN S 
Sbjct: 179 WVFGTDM-AGTDYRDWDAKGASALIIGNEGKGISRLLKETVDQMLTIPMVGEVQSLNASV 237

Query: 268 AAAVALY 274
           AA + +Y
Sbjct: 238 AAGLLMY 244


>gi|163802755|ref|ZP_02196645.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159173462|gb|EDP58284.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 247

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N F+YG+H V A L     +  +    K     RL    N        ++ +  +T+D  
Sbjct: 3   NEFIYGIHAVKAVLEREPERFIEAYVLKGRQDDRLMPILNDLQVCGVSIQQMTRKTLDDK 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+            + +       ++ LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-HGANHQGIIARVKAAKQLNENDIDGILAQHDAPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+    
Sbjct: 182 DIYQAKLTGPLAIVMGAEGGGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 255

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 126/255 (49%), Gaps = 10/255 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPF 91
           M+   ++     +     + G H V AAL +  R + ++   + A       A       
Sbjct: 5   MRDGARRRSAQGEEAVDLVKGRHAVLAALES-ERPVNKVWVAEGASGMDAIVAKARSRGV 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHN 146
            V+ VP   +D++      HQG+  + AP     LD V       S L++VLD + DPHN
Sbjct: 64  VVQFVPRSRLDEMAS---AHQGVIAQVAPYAYVDLDDVTRRDTGFSPLVVVLDEIADPHN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            GAILR+A A    G++  KR     + V+AK+A+GALE +P  R++N+  ALQ++   G
Sbjct: 121 FGAILRTAEAAGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVARVANVAQALQRLKQAG 180

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +  +G   ++K P  +       A+++G+EG+G+R   +E    +  + + G +++LN S
Sbjct: 181 YWIVGADVEAKVPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIPILGRVQSLNAS 240

Query: 267 NAAAVALYITQNHFA 281
            AA V LY      A
Sbjct: 241 VAAGVLLYEAVRQRA 255


>gi|227432701|ref|ZP_03914673.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351539|gb|EEJ41793.1| TrmH family tRNA/rRNA methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 249

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             F+YG H    +L +    I ++      ++ +              ++  P   +D++
Sbjct: 7   TEFVYGHHASVESLKSTQE-INKVWLQTGLQDKIRNEITQLAKKKKLVIQQAPKSKLDEL 65

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+ L  A     ++D +         +   ++LD + DPHN+G+ILR+A A 
Sbjct: 66  TD-GGNHQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+EH+P  R++NL + ++++        G    + 
Sbjct: 125 GVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   N  +ALI+G EG+G+ P  ++    M  + M G +++LN S AA++ +Y   
Sbjct: 184 DDYRRWDANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQGY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|296111487|ref|YP_003621869.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295833019|gb|ADG40900.1| tRNA/rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 253

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKT 95
           KS H +  E  F+YG +    AL   +++I ++      ++ +              ++ 
Sbjct: 2   KSEHQAPNETGFIYGHYASVEALK-GTQEINKVWLQTGLQDKIRHSVTQLAKKKGLVIQQ 60

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIG 148
            P   +D++      HQG+ L  A     T+D +  +          ++LD + DPHN+G
Sbjct: 61  APKSKLDELTD-GGNHQGVVLSVASFNYATIDDLFENAKKHQAEPFFLILDGIEDPHNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A A    GII  KR +   +A +AK ++GA+EH+P  R++NL + + ++   G  
Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVTRVTNLVNTVSELKDRGLW 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G    + +           ALI+G EGKG+ P  ++   SM  + M G +++LN S A
Sbjct: 180 VFGTDM-AGEDYRHWDATGATALIIGNEGKGISPLLKKKVDSMLTIPMIGHVQSLNASVA 238

Query: 269 AAVALY 274
           A++ +Y
Sbjct: 239 ASLLIY 244


>gi|295108534|emb|CBL22487.1| rRNA methylase, putative, group 3 [Ruminococcus obeum A2-162]
          Length = 247

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R            +  V  + +D++    
Sbjct: 5   IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKTDTIINYVSKERLDQLSETR 64

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+  + A     T+D +            L++LD+V DPHN+GAI+R+A      G
Sbjct: 65  A-HQGVIAQAAAYEYSTVDEILARAEEKGEPPFLILLDNVEDPHNLGAIIRTANLAGAHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   ++ +AK+++GA+ + P  +++N+   ++++   G   +      +  + 
Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNIVRMIEELKEKGIWFVCADMGGE-IMY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + L++G EG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 183 DLDLTGPMGLVIGNEGEGVSRLVREACDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 241


>gi|332283859|ref|YP_004415770.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330427812|gb|AEC19146.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 249

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 12/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I +L    +   +      +        V+ VP + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPDSIKELYVEASRRDKRMQTFIEQAQAANIRVRPVPAERLDGLA- 64

Query: 107 KEAVHQGLAL-----ETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +   HQG+       E A  +   LD +       LL++LD V DPHN+GA LR+A A  
Sbjct: 65  RGTRHQGVVALAEAREIAADVDEVLDLLEDKSEPALLLILDSVTDPHNLGACLRTADAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  +  +   ++ + + A GA E +PYI ++NL   ++++ S     +G    +  
Sbjct: 125 VHAVIAPRDKAVGLNSTVQRVACGAAETVPYIMVTNLARTMRQLKSRDVWLVGTDDQATG 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      +A ++GAEG+G+R  T+ET   +  + M G +++LNVS A+AV LY +  
Sbjct: 185 SLHQVDARRPMAWVMGAEGEGMRRLTRETCDELVTIPMLGSVESLNVSVASAVCLYESVR 244

Query: 279 HF 280
             
Sbjct: 245 QR 246


>gi|302190606|ref|ZP_07266860.1| tRNA/rRNA methyltransferase [Lactobacillus iners AB-1]
 gi|309803736|ref|ZP_07697822.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 11V1-d]
 gi|309806501|ref|ZP_07700505.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 03V1-b]
 gi|309809230|ref|ZP_07703100.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312871532|ref|ZP_07731625.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 3008A-a]
 gi|312872509|ref|ZP_07732577.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312873896|ref|ZP_07733934.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2052A-d]
 gi|312874966|ref|ZP_07734985.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2053A-b]
 gi|325912438|ref|ZP_08174833.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 143-D]
 gi|325913087|ref|ZP_08175457.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 60-B]
 gi|329920390|ref|ZP_08277122.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 1401G]
 gi|308164145|gb|EFO66406.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 11V1-d]
 gi|308167100|gb|EFO69275.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LactinV 03V1-b]
 gi|308170464|gb|EFO72487.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311089711|gb|EFQ48136.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090572|gb|EFQ48978.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091871|gb|EFQ50247.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311092927|gb|EFQ51278.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           LEAF 3008A-a]
 gi|325475780|gb|EGC78951.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 143-D]
 gi|325477508|gb|EGC80650.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           UPII 60-B]
 gi|328936066|gb|EGG32519.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus iners
           SPIN 1401G]
          Length = 258

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 12/240 (5%)

Query: 49  LFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L         KIF     + ++A   +         V++VP   +DK+
Sbjct: 9   DFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSVPKSKLDKL 68

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V ++  HQGL L   P     L+ +      +    L++LD + DPHN+G+ILR+A A  
Sbjct: 69  VDQQ-NHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADATG 127

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DGII  +R +   ++V+AK+++GA++++P +R++NL   +  +   G+   G +     
Sbjct: 128 VDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTAMSGDN 187

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    K  L++G EGKG+ P   +       + M G +++LN   A  + LY   N
Sbjct: 188 -YTNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFN 246


>gi|254512223|ref|ZP_05124290.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium KLH11]
 gi|221535934|gb|EEE38922.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium KLH11]
          Length = 257

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 94/249 (37%), Positives = 141/249 (56%), Gaps = 7/249 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            +++R  +  E ++L+G+H V  AL NP R+  +L+ T+NA  +L          P +  
Sbjct: 10  KEQARKVAAAETVWLFGLHAVRDALMNPKRQKLRLIVTRNAGDKLVEAIEFAGITP-EIA 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153
            P+     +   +VHQG ALE  PL    L      R    +++LD V DPHN+GAILRS
Sbjct: 69  DPRKFTAPIDPGSVHQGAALEVKPLEWGGLAENCIGREHPRVLLLDRVTDPHNVGAILRS 128

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + GF  +GL 
Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRVRNLADAIVELQNMGFLVLGLD 188

Query: 214 SDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++   +E      ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 189 GEADDTIESSLGGDRDRPVALVLGAEGPGLRQKTKETVDQLVKIDAAGGFGSLNVSNAAA 248

Query: 271 VALYITQNH 279
           +ALY ++  
Sbjct: 249 IALYASKTR 257


>gi|315274658|ref|ZP_07869498.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
           S4-120]
 gi|313615715|gb|EFR89003.1| RNA methyltransferase, TrmH family, group 3 [Listeria marthii FSL
           S4-120]
          Length = 251

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLALAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD +             ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQN 278
           LY    
Sbjct: 239 LYEVYR 244


>gi|120611681|ref|YP_971359.1| RNA methyltransferase [Acidovorax citrulli AAC00-1]
 gi|326317073|ref|YP_004234745.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|120590145|gb|ABM33585.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Acidovorax citrulli
           AAC00-1]
 gi|323373909|gb|ADX46178.1| RNA methyltransferase, TrmH family, group 3 [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 250

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 13/244 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            L+G H V   L    + I ++      ++A  R   +        +       I K+ G
Sbjct: 7   VLFGFHAVGVRLKTAPQSIIEIYYEATRRDARMRQFLERAKEAGARLIEADALRIAKLAG 66

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAF 157
               HQG+A     +     L   L+ +        LL+VLD V DPHN+GA LR A   
Sbjct: 67  SHG-HQGVAARVEAVAQVHSLDELLEQLEADGVEKPLLLVLDGVTDPHNLGACLRVADGA 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ 
Sbjct: 126 GAHAVIAPKDHAVGINATVAKVASGAAETMPYFMVTNLARTLGELKERNIWCIGTSDDAP 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L +      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+ V LY   
Sbjct: 186 RTLYEVDLKGPVALVLGAEGAGMRQLTRKTCDELVSIPMRGAVESLNVSVASGVCLYEAL 245

Query: 278 NHFA 281
               
Sbjct: 246 RQRG 249


>gi|259500942|ref|ZP_05743844.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|315653977|ref|ZP_07906893.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|259167636|gb|EEW52131.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|315488673|gb|EFU78319.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
          Length = 262

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 12/240 (5%)

Query: 49  LFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L         KIF     + ++A   +         V++VP   +DK+
Sbjct: 13  DFVFGRHAGLDFLRTQDASLINKIFLQNGVQASIADQVYQLAKKKKIIVQSVPKSKLDKL 72

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           V ++  HQGL L   P     L+ +      +    L++LD + DPHN+G+ILR+A A  
Sbjct: 73  VDQQ-NHQGLVLAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADATG 131

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DGII  +R +   ++V+AK+++GA++++P +R++NL   +  +   G+   G +     
Sbjct: 132 VDGIIIPQRRASGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTAMSGDN 191

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    K  L++G EGKG+ P   +       + M G +++LN   A  + LY   N
Sbjct: 192 -YTNWDARGKCVLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFN 250


>gi|116618911|ref|YP_819282.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097758|gb|ABJ62909.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 249

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
             F+YG H    +L +    I ++      ++ +              ++  P   +D++
Sbjct: 7   TEFVYGHHASVESLKSTQE-INKVWLQTGLQDKIRNEITQLAKKKKLVIQQAPKSKLDEL 65

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+ L  A     ++D +         +   ++LD + DPHN+G+ILR+A A 
Sbjct: 66  TD-GGNHQGVVLSVAAFEYASIDDLFEQADKKGEAPFFVILDGIEDPHNLGSILRTADAA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+EH+P  R++NL + ++++        G    + 
Sbjct: 125 GVHGIIIPKRRAVQLTATVAKTSTGAIEHVPVARVTNLVNIVEELKKRNVWVFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   N  +ALI+G EG+G+ P  ++    M  + M G +++LN S AA++ +Y   
Sbjct: 184 DDYRRWDANGAVALIIGNEGRGISPLLKKKVDGMVTIPMVGHVQSLNASVAASLLIYQGY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|145589451|ref|YP_001156048.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047857|gb|ABP34484.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 251

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 13/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIV 105
            L G H V A L      +  +    +   R        A       +     + + K+ 
Sbjct: 4   ILVGFHAVQARLRVDPDSLKSVYFDPSRRDRRMGDFLKQAEEILGERLHAADAERLHKLA 63

Query: 106 GKEAVHQGLALETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           G +  HQG+      +        +    ++ +   L +VLD V DPHN GA LR A   
Sbjct: 64  GHDR-HQGVVALAEKITVARTITEVVEDAESAQKKPLFLVLDGVTDPHNFGACLRVADGA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++  K  S S +A ++K +SGA E IP I ++NL  ++++M   G   +G   +++
Sbjct: 123 GVDAVVIPKDRSASINATVSKVSSGASEVIPVITVTNLVRSMKEMQEAGVWLVGTDDEAE 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +        IA+++GAEG+G+R  T+ET   +  + M G++++LNVS A+ V LY   
Sbjct: 183 KSIYDLDLTGPIAIVMGAEGEGMRRLTRETCDELVRIPMQGVVESLNVSVASGVCLYEAL 242

Query: 278 NHF 280
              
Sbjct: 243 RQR 245


>gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 293

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/272 (37%), Positives = 144/272 (52%), Gaps = 4/272 (1%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +K+   K    K        R HR       Q  N      S P+ + L+G H V  AL 
Sbjct: 17  AKRSETKPPRSKPWEGQGESRPHRPKSAPASQEKNPSPFRQSSPDVILLHGFHAVREALR 76

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           +  R    L AT+ A  +L  D+      P   V  + + + +G + VHQG+ LE  PL 
Sbjct: 77  SDQRTCLALYATEAAAEKLAPDSKAAGLAP-HIVTAEDLSRRLGSQTVHQGVLLEARPLE 135

Query: 123 SPTLDAVRN-SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
              +  +   S +++VLD + DPHN+GAI+R+A AF  D I+TT+R++P+   VLAK+AS
Sbjct: 136 PLDITEIPTRSGVVLVLDQITDPHNVGAIVRTAAAFDVDAIVTTERHAPALGGVLAKAAS 195

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G LEH+  + + NL  AL+ +    +  +GL S ++    Q      IAL+LG EG GLR
Sbjct: 196 GGLEHVQIVPVVNLARALETLGRLNYLRVGLDSAAEADFTQLPLQRPIALVLGGEGTGLR 255

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             T+E    +A L MPG IK+LNVSNA AV L
Sbjct: 256 RLTREKCDFLARLDMPGKIKSLNVSNACAVVL 287


>gi|116871624|ref|YP_848405.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740502|emb|CAK19622.1| RNA methyltransferase, TrmH family, group 3 [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 251

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRS-ERDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD +             ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR +   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQN 278
           LY    
Sbjct: 239 LYEVYR 244


>gi|83955674|ref|ZP_00964254.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
           NAS-14.1]
 gi|83839968|gb|EAP79144.1| RNA methyltransferase, TrmH family, group 3 [Sulfitobacter sp.
           NAS-14.1]
          Length = 258

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 91/249 (36%), Positives = 147/249 (59%), Gaps = 7/249 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++ +     + ++L+G+H V  AL NP+R+  +L+ T NA  +L+ +A        + V
Sbjct: 10  KEQEKKADVNQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLE-EAIAKAGIEPEVV 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
            P+     +   +VHQG  LE  PL   TL  V     +  +++LD V DPHN+GAILRS
Sbjct: 69  DPRKFRPPLDPGSVHQGAVLEVKPLSWGTLKDVCIGAEAPRVLLLDRVTDPHNVGAILRS 128

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       ++  + ++  E+  LAK+ASGALE  PY+R+ NL DA++++ S G+  +GL 
Sbjct: 129 AEVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYLVLGLD 188

Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++   +E  +   ++  +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAAA
Sbjct: 189 GEADMTVESALEGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAA 248

Query: 271 VALYITQNH 279
           +ALY +++H
Sbjct: 249 IALYASRDH 257


>gi|227522455|ref|ZP_03952504.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090407|gb|EEI25719.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 255

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 15/246 (6%)

Query: 45  QPENLFLYGVHTVSAALNN--PSRKIFQ---LLATKNALARLDWDANLPHPFPVKTVPPQ 99
           Q    F+ G H V AAL +  P  K+F    +   +N ++ +   A       +  VP Q
Sbjct: 5   QENEEFVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLV-ISEVPKQ 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            +D++   +  HQG+ L  A     T+D +             ++LD++ DPHN+G+I+R
Sbjct: 64  KLDRLSASQ-NHQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGSIIR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  K  +   +AV+AK+++GA+E +P  R++NL   ++++   G    G 
Sbjct: 123 TADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWVFGT 182

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +      +      +A+I+G EGKG+ P  ++    M  + M G I++LN S AA+V 
Sbjct: 183 DIEG-TDYRRWDARGSVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVL 241

Query: 273 LYITQN 278
           +Y   N
Sbjct: 242 IYQGFN 247


>gi|126735336|ref|ZP_01751082.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
 gi|126715891|gb|EBA12756.1| RNA methyltransferase, TrmH family, putative [Roseobacter sp. CCS2]
          Length = 284

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 145/248 (58%), Gaps = 9/248 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  +  E ++L+G+H V  AL NP+R+  +L+ T+NAL RL  DA        +  
Sbjct: 36  KEQAKRQAAQETVWLFGLHAVRDALENPARQKLRLVVTRNALERLG-DAVAQSGMEPEIS 94

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE  PL   +L+ V          +++LD V DPHN+GAIL
Sbjct: 95  DPRKFAAPLDPQSVHQGAALEVKPLDWGSLEDVALGDGPMPPRIVLLDRVTDPHNVGAIL 154

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    ++  +R+S  E+  LAK+ASGALE  PY+R+ NL DA++ +   G+  +G
Sbjct: 155 RSAEVFGARAVVAVQRHSAPETGALAKTASGALERQPYLRVRNLADAMEALKGMGYLVLG 214

Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L  ++   +E  +   ++  +AL++GAEG GLR KT+ET   +  +       +LNVSNA
Sbjct: 215 LDGEADLTVEAAVEGKRDRPVALVMGAEGPGLREKTRETCNELVKIDAAAGFGSLNVSNA 274

Query: 269 AAVALYIT 276
           AAVALY  
Sbjct: 275 AAVALYAV 282


>gi|28377488|ref|NP_784380.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254555718|ref|YP_003062135.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|308179699|ref|YP_003923827.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270320|emb|CAD63221.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254044645|gb|ACT61438.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|308045190|gb|ADN97733.1| tRNA/rRNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 255

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 123/250 (49%), Gaps = 15/250 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPP 98
              Q    F+ G H   AA+ +   +I ++       A +  D           V+ VP 
Sbjct: 5   EQDQTAADFVIGRHPAMAAIKSDQ-QINKVFIQSGLQADVLNDIAKIAKKRNLIVQYVPK 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
           Q +D++    A HQG+A+  A     T+D +         +   ++LD++ DPHN+G+I+
Sbjct: 64  QKLDRLTD-NANHQGVAVGVAAFEYATIDDLFAVAKAKNEAPFFLILDNIEDPHNLGSIM 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    GII  KR +   ++ +AK+++GA+EH+   R++NL   ++++   G    G
Sbjct: 123 RTADAAGAHGIIIPKRRAVGLTSTVAKTSTGAIEHVKVARVTNLVQTVKQLQEAGLWIFG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +      Q   +  + LI+G EGKG+ P  +++   M  + M G +++LN S AA++
Sbjct: 183 TDMNG-TDYRQWDASGAVGLIIGNEGKGISPLLKKSVDEMLTIPMIGHVQSLNASVAASL 241

Query: 272 ALYI--TQNH 279
            +Y   T  H
Sbjct: 242 LIYQGYTSRH 251


>gi|313884744|ref|ZP_07818499.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620005|gb|EFR31439.1| RNA methyltransferase, TrmH family, group 3 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 266

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 118/257 (45%), Gaps = 11/257 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLP 88
           KK++          +  +  LYG   V   L    P  K+F          +   +    
Sbjct: 6   KKIRGKQVNKVIDQEQNDEILYGRQVVLTILEEKKPINKVFIQKGLSGDKIQTILELVKQ 65

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141
                + VP   +D +  +   HQG+ +   P+   +L+               ++LD +
Sbjct: 66  RQLVFQEVPKAKLDDL-SQGQNHQGVVVTVPPVAYQSLEDCFALAEAKGQEPFFLILDGI 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+G+I+RSA A    GII  KR + S + ++AK+++GALEHIP +R++NL   + +
Sbjct: 125 EDPHNLGSIIRSADALGVHGIIIPKRRAASLTGIVAKTSTGALEHIPVVRVTNLGQVVDQ 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + + G         + + +        IA+I+G EG+G+  K  + A     + M G ++
Sbjct: 185 LKTKGVWIFATDM-AGQDIRSWNSQGPIAVIIGNEGQGVSKKLLDHADQTITIPMVGHVQ 243

Query: 262 ALNVSNAAAVALYITQN 278
           +LN S AA++ +Y   +
Sbjct: 244 SLNASVAASIIMYEVAS 260


>gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
 gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
          Length = 542

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 86/307 (28%), Positives = 143/307 (46%), Gaps = 36/307 (11%)

Query: 5   SKKKSEK----IFSLKDSHYAKLRRNHRDYKKMQSFNQKSR-HTSQPENL---------- 49
           S  ++E+     F  ++  Y   RR+  D ++  S   +SR   ++P+            
Sbjct: 157 SGSQNERSGPGRFRDRNDRYGDRRRS-GDERRQPSQRSRSRFDEARPQRPDAAPEAAAAT 215

Query: 50  -----FLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99
                 ++G H   AAL    R I ++  T          +L  DA       V+ V   
Sbjct: 216 PPADDLIWGRHATQAALE-AGRPIHRIWCTAEMRSASKFLQLLRDAK-ASGVLVEEVTWA 273

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152
            + +I G  +VHQG+AL+TA   +  LD        +    LL+ LD V DPHN+GA++R
Sbjct: 274 RLGQITG-GSVHQGIALQTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVR 332

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A    G++  +R S   +   AK A+GALEH+P  R+ NL  +L+K+   G++ +GL
Sbjct: 333 SAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGL 392

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +++    L     +  + L+ G+E +GL   T+     +  + + GI  +LN S A A+ 
Sbjct: 393 AAEGDVTLTDVDLSGPMVLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALC 452

Query: 273 LYITQNH 279
           +Y     
Sbjct: 453 VYEVARR 459


>gi|225630621|ref|YP_002727412.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
 gi|225592602|gb|ACN95621.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia sp. wRi]
          Length = 254

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/243 (33%), Positives = 136/243 (55%), Gaps = 9/243 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97
           + +   EN +LYG HT  +AL N +R+  +LLAT+N       +           V+ V 
Sbjct: 2   KSSKTNENFWLYGKHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVRLVE 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + ++ ++ K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+ILR
Sbjct: 62  SKILNDVLPKGANHQGIALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           ++  F+ D ++    +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G 
Sbjct: 122 TSACFNVDALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGF 181

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             ++K+ +++      K  +I G+E KG+R   +E    +  + M   I +LNVSNAAA+
Sbjct: 182 DCNTKENIDEIKSFEKKRVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAI 241

Query: 272 ALY 274
            LY
Sbjct: 242 GLY 244


>gi|227513728|ref|ZP_03943777.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
           ATCC 11577]
 gi|227083047|gb|EEI18359.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus buchneri
           ATCC 11577]
          Length = 255

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 15/246 (6%)

Query: 45  QPENLFLYGVHTVSAALNN--PSRKIFQ---LLATKNALARLDWDANLPHPFPVKTVPPQ 99
           Q    F+ G H V AAL +  P  K+F    +   +N ++ +   A       +  VP Q
Sbjct: 5   QENEEFVMGRHPVVAALKSDSPVNKVFIQTGIKKDENIISEILKLARKKRLV-ISEVPKQ 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            +D++   +  HQG+ L  A     T+D +             ++LD++ DPHN+G+I+R
Sbjct: 64  KLDRLSAGQ-NHQGVVLSVAAFEYATVDDLFANAKKQGIKPFFVILDNIEDPHNLGSIIR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  K  +   +AV+AK+++GA+E +P  R++NL   ++++   G    G 
Sbjct: 123 TADAAGVSGIIIPKHRAVGLTAVVAKTSAGAIERVPVARVTNLAATIKELKGRGMWVFGT 182

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +      +      +A+I+G EGKG+ P  ++    M  + M G I++LN S AA+V 
Sbjct: 183 DIEG-TDYRRWDARGSVAIIIGNEGKGISPLIKKQVDEMLTIPMVGDIQSLNASVAASVL 241

Query: 273 LYITQN 278
           +Y   N
Sbjct: 242 IYQGFN 247


>gi|78066159|ref|YP_368928.1| RNA methyltransferase TrmH, group 3 [Burkholderia sp. 383]
 gi|77966904|gb|ABB08284.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia sp. 383]
          Length = 247

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D           +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +     LS  LD ++   LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDIPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 2360]
 gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum DSM 1313]
          Length = 267

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 115/287 (40%), Gaps = 26/287 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I+  ++  I  +K                     ++ ++  + +  F+ G+  V  A
Sbjct: 1   MNYITSAQNPIIKEVKSL-------------------KQKKYREEKKLFFIEGIRFVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L     +I ++L +            L       +PV  +P +   +I   +   QG+  
Sbjct: 42  LK-EGVQIERILVSDKLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQ-NPQGILA 99

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             +       D        ++LD V DP N+G I+R+A A    G+I +K      +  +
Sbjct: 100 VLSMKNCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKV 159

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S  G++ HIP  +  ++ + + +M   G +      +           + IA+++G E
Sbjct: 160 LRSTMGSIFHIPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNE 219

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
             G+  + +  A  +  + MPG  ++LN S AA + +Y   + +  K
Sbjct: 220 ANGISEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILRKNIGK 266


>gi|255994721|ref|ZP_05427856.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
           49989]
 gi|255993434|gb|EEU03523.1| RNA methyltransferase, TrmH family [Eubacterium saphenum ATCC
           49989]
          Length = 297

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 9/263 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARL 81
           ++N+   K M++ N+ ++ T      F+YG + V  AL + ++ I ++  +  K    + 
Sbjct: 31  KKNNTSRKNMKNKNRDAKKTDLGNKFFVYGRNIVEEALIHSAKYIEKIYFSSKKKKNQKG 90

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLL 135
             D  +      + +    I + + +      +A+          DA+R         L+
Sbjct: 91  IEDLAISKGLRPEYIDDDEIAEFISENDAQGCIAVFNKFAYRDIDDALRLADIRGEKPLV 150

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD + DP N+GAI+R+A      GII  K  +   +  +AK + GA+  IP I ++NL
Sbjct: 151 LVLDRIEDPRNLGAIIRTARCAGVHGIIIAKDRAAGITPTVAKVSEGAIFSIPCIMVTNL 210

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             AL+ +   GF      ++     EQE     +AL+LG EGKG+       +     + 
Sbjct: 211 AAALKDLKQRGFWVYAADANGDSCFEQE-FGGSVALVLGNEGKGISKLCLNESDYKVSIP 269

Query: 256 MPGIIKALNVSNAAAVALYITQN 278
           M     +LNVS AA + +Y    
Sbjct: 270 MVNDFDSLNVSVAAGILMYEIVR 292


>gi|126697621|ref|YP_001086518.1| putative tRNA/rRNA methyltransferase [Clostridium difficile 630]
 gi|260681827|ref|YP_003213112.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
 gi|260685425|ref|YP_003216558.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
 gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3
           [Clostridium difficile]
 gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
 gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
          Length = 248

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108
           + G + V  A+ +       L+A       +     +       ++ V    +D++    
Sbjct: 7   IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 66

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    +      LD +             ++LD + DPHN+G+I+R+A A    G
Sbjct: 67  S-HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   + V+AK+++GA+E++P  +++N+ + ++++   G        D +    
Sbjct: 126 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGET-FY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++     + +++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 185 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 243


>gi|294496964|ref|YP_003560664.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|295702331|ref|YP_003595406.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
 gi|294346901|gb|ADE67230.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|294799990|gb|ADF37056.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
          Length = 247

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDK 103
           E+ F+ G + V  AL +  R I +L   + +              +   V+ VP + I++
Sbjct: 2   EHEFIIGRNPVLEALKSG-RDINKLWIAEGSQGGSMGQITQLAKRNGVLVQFVPKKKIEQ 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +V  + +HQG+A + A      LD +         S   ++LD + DPHN+G+I+R+A A
Sbjct: 61  MV--DGIHQGVAAQVAAYQYAELDDLFNLAEKRNESPFFLLLDELEDPHNLGSIMRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  KR S   +A +AK+++GA+EH+P  R++NL+  + ++   G   +G  +  
Sbjct: 119 VGAHGIIIPKRRSVGLTATVAKASTGAIEHVPVARVTNLSRTIDELKDRGVWIVGTDAKE 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       + L++G+EGKG+    +E    +  L M G + +LN S AA++ +Y  
Sbjct: 179 SDDYRNLDGGMPLTLVIGSEGKGMSRLIREKCDFLVQLPMVGHVTSLNASVAASLLMYEV 238

Query: 277 QN 278
             
Sbjct: 239 YR 240


>gi|33594398|ref|NP_882042.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
           I]
 gi|33597117|ref|NP_884760.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis
           12822]
 gi|33600961|ref|NP_888521.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
           RB50]
 gi|52783303|sp|Q7VTK4|RLMB_BORPE RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783304|sp|Q7W7I7|RLMB_BORPA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|52783305|sp|Q7WKX5|RLMB_BORBR RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33564473|emb|CAE43786.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis Tohama
           I]
 gi|33566568|emb|CAE37825.1| putative tRNA/rRNA methyltransferase [Bordetella parapertussis]
 gi|33575396|emb|CAE32473.1| putative tRNA/rRNA methyltransferase [Bordetella bronchiseptica
           RB50]
 gi|332383809|gb|AEE68656.1| putative tRNA/rRNA methyltransferase [Bordetella pertussis CS]
          Length = 245

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
            L G H V A L +    I ++    +   +      +        V  V  + +D +  
Sbjct: 6   VLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFLEQAERAGRRVHPVAAERLDGLA- 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +   HQG+            +   LD +    LL++LD V DPHN+GA LR+A A     
Sbjct: 65  RGTRHQGVVAVAEERSLAVGIDEVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A + + A GA + +PY+ ++NL   ++++       +G    + + + 
Sbjct: 125 VIAPRDRAVGLNATVQRVACGAADTVPYLTVTNLARTMRELKERDVWLVGTDDQAGESMH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      +A ++GAEG+G+R  T+ET   +  + M G +++LNVS A+AV LY +    
Sbjct: 185 QVDARRSMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVESLNVSVASAVCLYESVRQR 243


>gi|217965671|ref|YP_002351349.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           HCC23]
 gi|217334941|gb|ACK40735.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           HCC23]
 gi|307569780|emb|CAR82959.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           L99]
          Length = 251

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKDRKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD +             ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQN 278
           LY    
Sbjct: 239 LYEVYR 244


>gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-66c26]
 gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP
           107932]
 gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-63q42]
 gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC
           43255]
 gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-76w55]
 gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-97b34]
 gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-37x79]
 gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-32g58]
          Length = 245

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108
           + G + V  A+ +       L+A       +     +       ++ V    +D++    
Sbjct: 4   IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 63

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    +      LD +             ++LD + DPHN+G+I+R+A A    G
Sbjct: 64  S-HQGVIAYASEYKYYELDELIDLAKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   + V+AK+++GA+E++P  +++N+ + ++++   G        D +    
Sbjct: 123 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGET-FY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++     + +++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 182 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 240


>gi|319794335|ref|YP_004155975.1| RNA methyltransferase, trmh family, group 3 [Variovorax paradoxus
           EPS]
 gi|315596798|gb|ADU37864.1| RNA methyltransferase, TrmH family, group 3 [Variovorax paradoxus
           EPS]
          Length = 248

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 12/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTI--DKIVG 106
            ++G H V   +    + + ++L       AR+           V+ V   ++   K+ G
Sbjct: 6   VIFGFHAVGVRIKTAPKSVLEVLFDASRRDARMKQFIARAQEAGVRLVEADSLRIAKLAG 65

Query: 107 KEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               HQG+A    P         L   L+      LL+VLD V DPHN+GA LR A    
Sbjct: 66  SHG-HQGVAARVEPTAQIHSLDELLEGLEEAGTVPLLLVLDGVTDPHNLGACLRVADGAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K ++   +A +AK ASGA E +PY  ++NL   + ++       +G S D+  
Sbjct: 125 AHAVIAPKDHAAGINATVAKVASGAAETVPYFMVTNLARTMNELKERSIWCVGTSDDAPG 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +AL+LGAEG G+R  T++T   +  + M G +++LNVS A+ V LY    
Sbjct: 185 TIYQSDLKRPLALVLGAEGDGMRQLTRKTCDELVSIPMAGAVESLNVSVASGVCLYEAMR 244

Query: 279 HFA 281
              
Sbjct: 245 QRG 247


>gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1]
          Length = 246

 Score =  242 bits (619), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 13/244 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           + LYG + V  AL  P+ ++ +++     ++A AR   D        V+ +P   +D++V
Sbjct: 1   MLLYGRNPVLEAL--PAGRVAEVVLARGVEDAFARQVQDLARDAGVRVRWLPRIELDQLV 58

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFS 158
           G    HQG+  E   L   T+D + +         L+++LD V DP N GAI+RSA    
Sbjct: 59  GTTQ-HQGVVAEVEELQWATVDDILDRAEASGAPLLMVLLDGVTDPRNFGAIIRSAEVLG 117

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +R S   S V+AK+A+GA  ++P  +  NL   + ++ + G    G + ++ +
Sbjct: 118 AHGVVVEERRSAPLSPVVAKTAAGATAYLPVAQTKNLPRLIDQLKADGVWVYGAAGEAAQ 177

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +   + K AL++GAEG+G+R   +E    +  + + G +++LN S AA + LY    
Sbjct: 178 DVTRTDFSGKAALVIGAEGEGMRRLVREKCDVLVSIPVRGQVQSLNASVAAGILLYEMTR 237

Query: 279 HFAK 282
              K
Sbjct: 238 SRGK 241


>gi|15604508|ref|NP_221026.1| hypothetical protein RP664 [Rickettsia prowazekii str. Madrid E]
 gi|3861202|emb|CAA15102.1| unknown [Rickettsia prowazekii]
          Length = 248

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 85/252 (33%), Positives = 142/252 (56%), Gaps = 8/252 (3%)

Query: 33  MQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           M  FN+ +++      + ++YG H V +A+NNP R+I  +L TK      D +  L    
Sbjct: 1   MTVFNKMQNKQLDYKNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTR 57

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIG 148
             + V    + K++ K   HQG+A +  P+ S  LD +   +    +++LD + D  NIG
Sbjct: 58  SYEIVNNYILSKLL-KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIG 116

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF 
Sbjct: 117 AIIRSAAAFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFW 176

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            IG++  +K+    ++ +DKIAL+ GAE KG+R   +ET   +A + +   +++LNV+NA
Sbjct: 177 IIGVTGYAKEYFTDKLISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANA 236

Query: 269 AAVALYITQNHF 280
           A++  +    +F
Sbjct: 237 ASIIFHSLHKYF 248


>gi|270291198|ref|ZP_06197421.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
           acidilactici 7_4]
 gi|304385483|ref|ZP_07367828.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
 gi|270280594|gb|EFA26429.1| RNA methyltransferase, TrmH family, group 3 [Pediococcus
           acidilactici 7_4]
 gi|304328690|gb|EFL95911.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
          Length = 251

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 11/242 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + ++ +  F+ G H   A+L +     K+F     K+                ++ V   
Sbjct: 3   NENKQQPDFVIGRHPAMASLKSGHSINKVFIQEGLKSESIGQIIAKAKKQGLVIQRVSKS 62

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            +D +      HQG+ L  A     +L+ V         +  +++LD + DPHN+G+ILR
Sbjct: 63  KLDTLA-NGQNHQGVVLAVASFEYASLEQVFELAESRNEAPFVVILDGIEDPHNLGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    G+I  KR +   ++ +AK+++GA+E +P ++++NL + L+++   G    G 
Sbjct: 122 TADAAGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVNNLVNTLKELKDRGLWIFGT 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
              +     +      + LI+G EGKG+   T+E    M  + M G I++LN S AA + 
Sbjct: 182 DM-AGTDYRRWDATGPVGLIIGNEGKGMARLTKENVDEMLTIPMVGDIQSLNASVAAGLL 240

Query: 273 LY 274
           +Y
Sbjct: 241 IY 242


>gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
 gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum ATCC 27405]
 gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           thermocellum JW20]
          Length = 267

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 112/282 (39%), Gaps = 25/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I+  ++  I  +K                     ++ ++  + +  F+ G+  V  A
Sbjct: 1   MNYITSAQNPIIKEVKSL-------------------KQKKYREEKKLFFIEGIRFVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L     +I ++L +            L       +PV  +P +   +I   +   QG+  
Sbjct: 42  LK-EGVQIERILVSDKLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQ-NPQGILA 99

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             +       D        ++LD V DP N+G I+R+A A    G+I +K      +  +
Sbjct: 100 VLSMKNCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKV 159

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S  G++ HIP  +  ++ + + +M   G +      +           + IA+++G E
Sbjct: 160 LRSTMGSIFHIPICQSQDIFETMDRMKKRGIKICAAHLEGSCDYFDLEYKNNIAIVIGNE 219

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             G+  + +  A  +  + MPG  ++LN S AA + +Y    
Sbjct: 220 ANGISEEVKNFADILVRIPMPGRAESLNASVAAGILMYEILR 261


>gi|254516842|ref|ZP_05128900.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR5-3]
 gi|219674347|gb|EED30715.1| RNA methyltransferase, TrmH family, group 3 [gamma proteobacterium
           NOR5-3]
          Length = 256

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 111/248 (44%), Gaps = 17/248 (6%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--PFPVKTVPPQTIDKI 104
           + + +G+H V   L    + +  L   K     R+     L      PV  +P   +D++
Sbjct: 2   SEYAFGLHAVEELLRRQPKSVSGLWVQKGRDDGRMQALLALAASTDTPVSRLPRVKLDEL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLD------------AVRNSQLLMVLDHVNDPHNIGAILR 152
           V     HQG+  +         D                  L++VLD V DPHN+GA LR
Sbjct: 62  VS--GRHQGVVAQLGENTEEQADLRWSEEQLARAVTYNPRALVLVLDGVTDPHNLGACLR 119

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A     ++  K  +   +AV+ K A GA E +P +R++NL  +L  + + G    G 
Sbjct: 120 SADAAGVTAVVVPKDNAADITAVVRKVACGATETVPLVRVTNLARSLDALKAAGVWIYGT 179

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + ++ + L        +AL++GAEG G+R  T+E    +  L M G + +LNVS A  V 
Sbjct: 180 AGEAGESLYSTELKGAVALVMGAEGAGMRRLTRERCDFLLSLPMAGSVTSLNVSVATGVC 239

Query: 273 LYITQNHF 280
           L+  +   
Sbjct: 240 LFEIRRQR 247


>gi|115351501|ref|YP_773340.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|172060520|ref|YP_001808172.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|115281489|gb|ABI87006.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|171993037|gb|ACB63956.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia ambifaria
           MC40-6]
          Length = 247

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D           +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +     LS  LD ++   LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDDASATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|292572291|gb|ADE30206.1| tRNA/rRNA methyltransferase [Rickettsia prowazekii Rp22]
          Length = 242

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 138/245 (56%), Gaps = 7/245 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++      + ++YG H V +A+NNP R+I  +L TK      D +  L      + V  
Sbjct: 2   QNKQLDYKNSYYMYGKHPVLSAINNPKRQIENILCTKEFF---DINKKLIGTRSYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155
             + K++ K   HQG+A +  P+ S  LD +   +    +++LD + D  NIGAI+RSA 
Sbjct: 59  YILSKLL-KHQTHQGIAAKVRPIFSYNLDDIDINKPQCKIVILDQITDTQNIGAIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IG++  
Sbjct: 118 AFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGY 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +K+    ++ +DKIAL+ GAE KG+R   +ET   +A + +   +++LNV+NAA++  + 
Sbjct: 178 AKEYFTDKLISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHS 237

Query: 276 TQNHF 280
              +F
Sbjct: 238 LHKYF 242


>gi|261854979|ref|YP_003262262.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
           neapolitanus c2]
 gi|261835448|gb|ACX95215.1| RNA methyltransferase, TrmH family, group 3 [Halothiobacillus
           neapolitanus c2]
          Length = 268

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 115/251 (45%), Gaps = 14/251 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPP 98
             S     +L G H V AAL +   ++  ++  +    +      +        ++  P 
Sbjct: 4   RKSASSTQWLSGFHAVEAALQHDPERVLSVIFEQGRQDKRVQQLRVLAESRGVSIEEAPE 63

Query: 99  QTIDKIVGKE---AVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           +     V  +   A HQG+     P        L   LD +     L++LD V DPHN+G
Sbjct: 64  KVFADRVRADRELARHQGVLARYQPKPAGNEHDLFALLDNLDEPAFLLILDGVTDPHNLG 123

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A LRSA A     +I+ K  +   +    K+ASGA E +P+I+++NL   L  + S    
Sbjct: 124 ACLRSAEAAGVHAVISPKDRAVGLTPTARKAASGAAERLPFIQVTNLARTLADLKSRQIW 183

Query: 209 TIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +G +      L +     + +AL++G+EG+GLR  TQE    +  + M   +++LNVS 
Sbjct: 184 IVGAAGGGMVSLYESDFAAESVALVMGSEGEGLRRLTQEGCDQLIFIPMRPPVESLNVSV 243

Query: 268 AAAVALYITQN 278
           AAAV L+  + 
Sbjct: 244 AAAVCLFEFRR 254


>gi|291550111|emb|CBL26373.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
          Length = 254

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 11/251 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           +       E   + G + V  A  +     KI+ L   ++   R        H   +  V
Sbjct: 2   QENREQGTETFVIEGRNAVLEAFRSGRTIDKIYVLDGCQDGPVRTIVREAKKHGSLINFV 61

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149
             + + ++  +   HQG+    A     T+D +         +  L++LD++ DPHN+GA
Sbjct: 62  TKERLSQL-SETGKHQGVIAHAAAYEYSTIDDMLKLAEERGEAPFLILLDNIEDPHNLGA 120

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A      G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   
Sbjct: 121 IIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWF 180

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +    D ++ +        I L++G EG+G+    +E    +A + M G I +LN S AA
Sbjct: 181 VCADMDGEQ-MYDLNLTGPIGLVIGNEGEGVGRLVKENCDFVAGIPMKGQINSLNASVAA 239

Query: 270 AVALYITQNHF 280
            V  Y      
Sbjct: 240 GVLAYEIVRQR 250


>gi|313900465|ref|ZP_07833958.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
 gi|312954527|gb|EFR36202.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. HGF2]
          Length = 240

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 112/238 (47%), Gaps = 11/238 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG + V   L    + I ++L  +                PVK +  + +D+++    
Sbjct: 4   YVYGKNVVKQLLQ-DGKPIHEVLIQEGIRDTALEGEIKKRRIPVKVLGRKKMDQLL--NG 60

Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+A       +  L+ +  S       LL++LD + DPHN+GAILR+      DG+I
Sbjct: 61  NHQGIAACIDDYKTWELEELLESVPQGKQPLLVMLDGLEDPHNLGAILRTCDCIRADGVI 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +  +AK ++GA++ +    ++NL  A++ +   G+  +G   ++ +   + 
Sbjct: 121 IGKHRNVRLTPTVAKVSTGAIDTVKVSVVTNLVQAIKYLKKQGYWVVGTDFENSRDYREG 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279
             +  + L++G+EG G+    ++       L M G + +LN S AA + LY    Q H
Sbjct: 181 QYDVPLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQRH 238


>gi|170732873|ref|YP_001764820.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|169816115|gb|ACA90698.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           cenocepacia MC0-3]
          Length = 247

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +     LS  LD +    LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|71891873|ref|YP_277602.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71795979|gb|AAZ40730.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 247

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 11/245 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V + L+N S +I  +     +K+   +L  D        ++    + +D I
Sbjct: 2   SELVYGIHAVKSVLDNYSHRIVSVCIIQKSKDLRLKLLIDQIKQRRISIRECSRRQLD-I 60

Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             + A+HQG+ ++  P        L   L   + + LL++LD V DPHN+GA LRSA A 
Sbjct: 61  QTQGALHQGIIVKIVPNDCMQENDLPNFLMQCKTTPLLVILDGVTDPHNLGACLRSADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S   +  + K ASG++++IP+++++NL   LQ +  +    IG    S+
Sbjct: 121 GAHIVIAPRNRSACLNGTVRKVASGSVDNIPFMQVTNLIRTLQLLQKYNIWIIGTVMQSQ 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +        +A ++G+EG G+R  TQ+    +  + M G+  +LNVS A  + L+   
Sbjct: 181 RLIFNSKLTRPLAFVMGSEGNGIRYLTQKKCDELVTIPMLGVATSLNVSVATGICLFEAL 240

Query: 278 NHFAK 282
               K
Sbjct: 241 RQRWK 245


>gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 315

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 28/295 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++I+  K  H AKL R+ R+           RH  +   + + G + V   L
Sbjct: 35  KGPTPKAEDRIYHAK--HKAKLERDRRN---------SGRHQKETAEMVV-GRNPVIECL 82

Query: 62  NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +   P+  ++ +  T+N   RL     +      P+  V    +D++ G   +HQG+ L+
Sbjct: 83  HAKVPATTLYIVAGTRN-DKRLSEAVAMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQ 140

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +D +           + ++LD++ DP N+GA++RS  AF  DG+I  +R S 
Sbjct: 141 IPPYKYADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229
           S +AV  ++++G    +P  R +N+T  +Q+    G+Q +GL +  +  L+      D +
Sbjct: 201 SVTAVAWRTSAGTAARLPVARATNITRTVQQFQKSGYQVVGLDAGGEHTLDTYNGATDPV 260

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
            +++G+EGKG+    +E    +  + M   +++LN S AA   L  +  Q   A+
Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315


>gi|325204004|gb|ADY99457.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240355]
          Length = 234

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 9/226 (3%)

Query: 63  NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              + I +L   +   +A  R   +        V       ++ I  K A HQG+A    
Sbjct: 3   QNPKSIVELYIQEGKSDARTREVLEKAANENIRVYFADADRLNAI-SKGARHQGVAGFID 61

Query: 120 PL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                  L   L+ +    LL++LD + DPHN+GA LR+A A     +I  K  S   +A
Sbjct: 62  ASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNA 121

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            ++K A GA E +PYI ++NL   L+++  +G   IG        L      D  A ++G
Sbjct: 122 TVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMG 181

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 182 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227


>gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. WH 5701]
 gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. WH 5701]
          Length = 547

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 136/288 (47%), Gaps = 16/288 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRR-NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           S+   ++         A+  R +  +    ++     R  ++P +  ++G H   AAL  
Sbjct: 135 SRPDGDRPRFQPGRPPARPSRFSEPEAPGPEASGSSERFGAEPADDLVWGRHPAQAALE- 193

Query: 64  PSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             R I ++  T          +L  DA   +   V+ V    + +I G  AVHQG+ L+ 
Sbjct: 194 GDRPIHRIWCTPELRFAPRFLQLLRDAK-ANGVLVEEVTWARLGQISG-GAVHQGIVLQA 251

Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           A   +  L         +  + LLM +D + DPHN+GAI+RSA A    G++  +R +  
Sbjct: 252 AAAETLDLASLIDGCSTIGEAPLLMAVDGLTDPHNLGAIVRSAEALGAHGLVLPQRRNAG 311

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  +AK A+GALEH+P  R+ NL  +++++   G++ +GL+ +    L +   +  + +
Sbjct: 312 LTGSVAKVAAGALEHLPVARVVNLNRSIEQLKDAGYRVVGLAEEGNVSLMEADLDGPLVV 371

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + G+E +GL   T++    +  + + G   +LN S A A+ LY     
Sbjct: 372 VTGSEAQGLSMLTRKHCDQLIRIPLRGATPSLNASVATALLLYEIARR 419


>gi|317497615|ref|ZP_07955933.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895174|gb|EFV17338.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 394

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 14/257 (5%)

Query: 35  SFNQKSRHTSQ--PENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHP 90
             N+K +       +   + G + V  AL    P  KIF L   ++   R          
Sbjct: 138 DLNKKKKQEKNMNHKEDLIAGRNAVIEALRAKKPIDKIFVLDGCQDGPIRTIVREAKKTD 197

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143
             +K V  + ++++  +   HQG+    A     T++ +             ++LD + D
Sbjct: 198 AILKFVDKERLNQLTNEH--HQGVVAIVAAYEYGTIEDLFKRAEEKGEDPFFILLDGIED 255

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A      G+I  K  +   +  +AK+++GA+ + P ++++N+   + ++ 
Sbjct: 256 PHNLGAIIRTANLAGAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVTNIGKTMDELK 315

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G        D +    Q      I L++G EG G+    +E    ++ + M G I +L
Sbjct: 316 ERGMWFACADMDGEVIYRQ-NLTGSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSL 374

Query: 264 NVSNAAAVALYITQNHF 280
           N S AA V  +      
Sbjct: 375 NASVAAGVLAFEVVRQR 391


>gi|304321685|ref|YP_003855328.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
 gi|303300587|gb|ADM10186.1| rRNA methylase [Parvularcula bermudensis HTCC2503]
          Length = 243

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/243 (38%), Positives = 131/243 (53%), Gaps = 6/243 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
             R     E L+LYG HTV AAL NP R   +LLAT+NA   L W         +  V P
Sbjct: 2   SQRRAPPIEPLWLYGRHTVEAALGNPQRHQVKLLATRNA---LGWLKERGRTITIDPVTP 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155
           + IDK +   AVHQGLA+   PL SP+L  +     +  L+VLD + DP NIGA+ R A 
Sbjct: 59  KDIDKALPPGAVHQGLAMLANPLPSPSLAEILENGETGPLLVLDQITDPQNIGALFRLAA 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AFS   +I   R +P     LAK+A+GA+E +P+I + N++ AL+ +        GL+ +
Sbjct: 119 AFSAKAVIAQDRRTPPLGGPLAKAATGAVECVPFIPVVNISRALEAIREKHIPIFGLAGE 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               L         AL+LGAEGKGLRP  +     +  + +   I++LNV+ AAA++LY 
Sbjct: 179 GALSLRDTAPTRTCALVLGAEGKGLRPGVRAVCDQLVAIPIDPQIESLNVATAAAISLYH 238

Query: 276 TQN 278
              
Sbjct: 239 LGR 241


>gi|329121964|ref|ZP_08250576.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
           micraerophilus DSM 19965]
 gi|327467262|gb|EGF12765.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Dialister
           micraerophilus DSM 19965]
          Length = 272

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 122/272 (44%), Gaps = 12/272 (4%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-TK 75
            +H    +      KK  S   K +   + E+LF+ G ++V  ALN    +I ++   + 
Sbjct: 6   KTHKNSNKTQ--TVKKQFSQKNKRKTLKKSEDLFICGRNSVKEALN--ENQIKKIFIKSG 61

Query: 76  NALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129
           N   RL     +      P++    + +DK+       QG+     P     L+ V    
Sbjct: 62  NNDQRLKDIVKIAQNKNIPIQIEEQEILDKMSDGVRN-QGIVASMKPFEYSDLEEVLLKA 120

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   L+++LD V D  NIGAI+R+A       ++  K  S   +A   K+A+GA  ++P 
Sbjct: 121 KEDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPV 180

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             I N+   L+ +   GF  +G   + +    +      + +++GAEGKG+   T++   
Sbjct: 181 CEIGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCD 240

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + M G + +LNVS AAA+ +Y +     
Sbjct: 241 FLVRIPMKGKVSSLNVSVAAALLIYESVKQRG 272


>gi|197301392|ref|ZP_03166473.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
           29176]
 gi|197299549|gb|EDY34068.1| hypothetical protein RUMLAC_00123 [Ruminococcus lactaris ATCC
           29176]
          Length = 270

 Score =  242 bits (618), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 16/268 (5%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALA 79
           ++R N R ++      Q + HT     L + G + V  A  +  P  K+F L   ++   
Sbjct: 5   RMRENSRYHEAENHTGQDNSHT-----LVIEGRNAVLEAFRSGKPIDKVFVLDGCQDGPV 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132
           R        H   +  V  + + +I  +   HQG+    A     T+D +          
Sbjct: 60  RTIVREAKKHDALLNFVTKERLSQI-SETGKHQGVVAYAAAYEYSTVDDMLALAEERGED 118

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             +++LD++ DPHN+GAI+R+A      G+I  KR +   +A +AK+++GAL + P  ++
Sbjct: 119 PFILILDNIEDPHNLGAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKV 178

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +NL   ++++   G   +    D + P+        I L++G EG+G+    +E    +A
Sbjct: 179 TNLVKTMEELKEKGLWFVCADMDGE-PMYHLNLTGPIGLVIGNEGEGVSRLVKENCDFVA 237

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M G I +LN S AA V  Y      
Sbjct: 238 GIPMKGQINSLNASVAAGVLAYEIVRQR 265


>gi|328543340|ref|YP_004303449.1| RNA methyltransferase, TrmH family, group 3 [polymorphum gilvum
           SL003B-26A1]
 gi|326413085|gb|ADZ70148.1| RNA methyltransferase, TrmH family, group 3 [Polymorphum gilvum
           SL003B-26A1]
          Length = 265

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 105/236 (44%), Positives = 155/236 (65%), Gaps = 1/236 (0%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
              + LYG+HTV AA  NP R+  +L AT+NAL RL+     P   PV+ + P+ +D++V
Sbjct: 30  EGPILLYGLHTVEAAFQNPDRRRHKLFATENALRRLEERGIRP-DVPVEILAPRALDRMV 88

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            ++AVHQG+ LE   L +  +D ++ ++L++ LD V DPHN+GAILRSAVA + D ++TT
Sbjct: 89  TRDAVHQGVVLEADALPAYGVDELKGARLVLALDQVTDPHNVGAILRSAVALAADAVVTT 148

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R++P E  VLAK+ASGAL+ I ++R+ N+   L +M   GF  + L SD +  LEQ   
Sbjct: 149 ERHAPEEGPVLAKAASGALDMIRHVRVKNMARFLVEMGEQGFFRVALDSDGEASLEQTPF 208

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            DK  L+LG+EGKG+R   +     +A L MPG I++LNVSNAA +ALY+ +   +
Sbjct: 209 GDKTVLVLGSEGKGVRQGVRAACDRLARLDMPGRIRSLNVSNAAVLALYVARQRMS 264


>gi|167836767|ref|ZP_02463650.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis MSMB43]
          Length = 247

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIEGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHF 280
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY   +   
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRR 244

Query: 281 AK 282
           AK
Sbjct: 245 AK 246


>gi|313891900|ref|ZP_07825502.1| RNA methyltransferase, TrmH family, group 3 [Dialister
           microaerophilus UPII 345-E]
 gi|313119675|gb|EFR42865.1| RNA methyltransferase, TrmH family, group 3 [Dialister
           microaerophilus UPII 345-E]
          Length = 272

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 12/272 (4%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-TK 75
            +H    +      KK  S   K +   + E+LF+ G ++V  ALN    +I ++   + 
Sbjct: 6   KTHKNSNKTQ--TVKKQFSQKNKRKTLKRSEDLFICGRNSVKEALN--ENQIKKIFIKSG 61

Query: 76  NALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129
           N   RL     +      PV+    + +DK+       QG+     P     L+ V    
Sbjct: 62  NNDQRLKDIVKIAQNKNIPVEIEEQEILDKMSDGVRN-QGIVASMKPFEYSDLEEVLSKA 120

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   L+++LD V D  NIGAI+R+A       ++  K  S   +A   K+A+GA  ++P 
Sbjct: 121 KEDPLIVLLDGVEDVRNIGAIVRTAECAGVSAVLLPKHKSAPVTAAAIKTAAGAFSYLPV 180

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             I N+   L+ +   GF  +G   + +    +      + +++GAEGKG+   T++   
Sbjct: 181 CEIGNIRQTLEHLKEKGFWVVGADMEGELLYYESNLKGPLVIVMGAEGKGISLLTKKMCD 240

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  + M G + +LNVS AAA+ +Y +     
Sbjct: 241 FLVRIPMKGKVSSLNVSVAAALLIYESVKQRG 272


>gi|251809948|ref|ZP_04824421.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875018|ref|ZP_06283893.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis SK135]
 gi|251806491|gb|EES59148.1| RNA methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296346|gb|EFA88865.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis SK135]
 gi|329729435|gb|EGG65838.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU144]
 gi|329734667|gb|EGG70974.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU028]
          Length = 255

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++L       +   D           V+TVP   +D 
Sbjct: 8   EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDF 66

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A
Sbjct: 67  LA--NAPHQGVAALVAPYEYANFDEFLQKQKKKDSYSTVIILDGLEDPHNLGSILRTADA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  +++
Sbjct: 125 SGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANN 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  + +++G+EG+G+     +       + M G + +LN S AA++ +Y  
Sbjct: 185 ATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEV 244

Query: 277 QN 278
             
Sbjct: 245 YR 246


>gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           tuberculostearicum SK141]
 gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           tuberculostearicum SK141]
          Length = 315

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 140/295 (47%), Gaps = 28/295 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++I+  K  H AKL R+ R+           RH  +   + + G + V   L
Sbjct: 35  KGPTPKAEDRIYHAK--HKAKLERDRRN---------SGRHQKETAEMVV-GRNPVIECL 82

Query: 62  NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +   P+  ++ +  T+N   RL     +      P+  V    +D++ G   +HQG+ L+
Sbjct: 83  HAKVPATTLYIVAGTRN-DKRLSEAVAMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQ 140

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +D +           + ++LD++ DP N+GA++RS  AF  DG+I  +R S 
Sbjct: 141 IPPYKYADVDELIARAAENARPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229
           S +AV  ++++G    +P  R +N+T  +Q+    G+Q IGL +  +  L+      D +
Sbjct: 201 SVTAVAWRTSAGTAARLPVARATNITRTVQQFQKSGYQVIGLDAGGEHTLDTYNGATDPV 260

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
            +++G+EGKG+    +E    +  + M   +++LN S AA   L  +  Q   A+
Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTDWVESLNASVAAGSVLSEFARQRRAAQ 315


>gi|206559920|ref|YP_002230684.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|198035961|emb|CAR51853.1| putative tRNA/rRNA methyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 247

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   +   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +     LS  LD +    LL+VLD V DPHN+GA LR A +     
Sbjct: 66  TER-HQGVVARVEDMPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADSAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
 gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
          Length = 536

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 138/310 (44%), Gaps = 38/310 (12%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ------------------- 45
           S+   ++    +D   ++ R + R  ++  S  ++SR   +                   
Sbjct: 112 SETDRKEARRFRDERPSRRRSDERLGRR-PSLGERSRPADRLLSSKRLDPSTSDRVPEAE 170

Query: 46  -----PENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPH--PFPVKTV 96
                  +  L+G H   AAL    R I ++  T +  +  R              V+ V
Sbjct: 171 AFGPAAADDLLWGRHASQAALE-AGRPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEV 229

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149
               + ++ G  AVHQG+ L+TA   +  L ++         S LL+ LD + DPHN+GA
Sbjct: 230 TWARLGQLTG-GAVHQGIVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGA 288

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA A    G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+ +   G++ 
Sbjct: 289 IIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRV 348

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           IGL+ +    L     +  + ++ G+E +G+   T+     +  + + G+  +LN S A 
Sbjct: 349 IGLAEEGDITLPDVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVAT 408

Query: 270 AVALYITQNH 279
           A+ LY     
Sbjct: 409 AMCLYEVARR 418


>gi|260437951|ref|ZP_05791767.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
           DSM 2876]
 gi|292809702|gb|EFF68907.1| RNA methyltransferase, TrmH family, group 3 [Butyrivibrio crossotus
           DSM 2876]
          Length = 245

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 11/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
              + G + V  A  +     K++ L   K+                ++ V  + +D++ 
Sbjct: 5   EFTIEGRNAVIEAFRSGKTIDKLYVLDGCKDGPVMTIIREAKKTDTIIRYVDREILDRL- 63

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158
            K   HQG+    A      ++ + N          + +LD + DPHN+GAI+R+A    
Sbjct: 64  SKTGHHQGVVANAAAYDYAEVEDILNAAREKGEPPFVFILDGIEDPHNLGAIIRTANLAG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  KR +   +A +AK+++GAL + P  +++NL+  ++++   G   +      + 
Sbjct: 124 AHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLSATIEELKKEGLWFVCADMGGET 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        I L++G EG+G+    +E    +A + M G I +LN S AA V  Y    
Sbjct: 184 -MYNLNLTGPIGLVIGNEGEGVSRLVKEKCDYVASIPMKGNIDSLNASVAAGVLAYEIVR 242

Query: 279 HF 280
             
Sbjct: 243 QR 244


>gi|85858124|ref|YP_460326.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721215|gb|ABC76158.1| 23S rRNA Gm2251 methyltransferase [Syntrophus aciditrophicus SB]
          Length = 249

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 11/240 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIV 105
             +YGV+ +  AL +    + +++  +        +          PV+      +D + 
Sbjct: 2   EVIYGVNPLREALISGGEGVTRIVVARGRSESSISEIRTLAKQRGIPVEIRERSFLDDLA 61

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFS 158
           G  A HQG+           LDAV  +        L+++LD + DPHN+GA++RSA  F 
Sbjct: 62  G-HASHQGVLGVCTAYRYQDLDAVIANRHPSCPYDLVLILDGILDPHNLGALIRSAHCFG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            +GII  +R + S +  + K+++GA  HIP  R++NL  AL ++ + GF   G  + + +
Sbjct: 121 ANGIILPERRAASVTGTVIKTSAGAARHIPIARVANLARALDELKTKGFWIFGADARADQ 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        + L++G E KGLRP  ++    +  + M G I +LNVS +  + L+  + 
Sbjct: 181 SVSDPDYQGAVGLVMGGESKGLRPLIRKKCDDLISIPMLGKIDSLNVSVSGGIILHEIRR 240


>gi|326790453|ref|YP_004308274.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           lentocellum DSM 5427]
 gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           lentocellum DSM 5427]
          Length = 297

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 132/291 (45%), Gaps = 27/291 (9%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKS-------RHTSQPENL-----FLYGVHTVSAAL 61
             ++    +  + ++  K+     +K        R +  PE+       L+G + V  AL
Sbjct: 9   KKQERTDKQPSQENKFNKRESFKKEKPEFTRGYNRRSVVPEDFEIDENILFGRNAVIEAL 68

Query: 62  NNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
            +  R+I ++L  K            A          V    +D++ G+E  HQG+    
Sbjct: 69  KS-EREIDKILIQKGEKEGSVIKIISAAKAKGIVTLEVEKSKLDELTGREK-HQGVVAYV 126

Query: 119 APLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           A     +++ +            +++L+++ DPHN+GAI+R+A      GII  KR +  
Sbjct: 127 AAHEYVSVEEILEDAAAKGEPAFVLILENIQDPHNLGAIIRTAHTAGVHGIIIPKRRAVG 186

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  +AK+++GALEH    ++SN+   ++ +   G        D K  L +E     I +
Sbjct: 187 LTGTVAKASAGALEHTKVAKVSNIAQTIKDLQQKGLWIACADMDGKV-LFEENLTGPIGI 245

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
           ++G+EG+G+   T++T   +  + M G + +LN S AA++ +Y    Q +F
Sbjct: 246 VVGSEGEGISKLTKQTCDYVVSVPMYGKVTSLNASVAASLMVYEVVRQRNF 296


>gi|319442437|ref|ZP_07991593.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 318

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 15/264 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDA--NL 87
           + +   ++++         + G + V   L+   PS  ++  L T N   RL        
Sbjct: 56  ERRDSGRQAKKDPDNTPELVVGRNPVIECLHAHVPSTALYVALGTGN-DDRLSEAVHTAA 114

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140
               PV  V    +D++ G   +HQG+ L+  P      D +           L++VLD+
Sbjct: 115 ERGIPVLEVARDEMDRMTG-NGMHQGIGLQVPPYKYAADDDLIERAKDSGRPGLIVVLDN 173

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+GA++RS  AF   G++  +R S S +AV  ++++G    +P  R +NL  +L+
Sbjct: 174 ITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVARATNLVRSLK 233

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K    G+Q +GL +     L+     D + +++G+EGKGL     ET   +  + M   +
Sbjct: 234 KFQQSGYQVVGLDAGGSHTLDTYDGTDPVVVVVGSEGKGLSRLVGETCDDILSIPMTSTV 293

Query: 261 KALNVSNAAAVAL--YITQNHFAK 282
           ++LN S AA V L  +  Q    +
Sbjct: 294 ESLNASVAAGVVLSEFARQRRVRQ 317


>gi|300173976|ref|YP_003773142.1| TrmH family RNA methyltransferase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888355|emb|CBL92323.1| RNA methyltransferase, TrmH family, group 3 [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 252

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 116/238 (48%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103
           +  F+YG +    AL   +++I ++        ++  +           ++  P   +D+
Sbjct: 9   QTEFVYGHYASVEALK-GTQEINKVWLQTGLQDKIRNEVTQLAKKKGLVIQQAPKSKLDE 67

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+ L  A     T+D +             ++LD + DPHN+G+ILR+A A
Sbjct: 68  LTD-GGNHQGVVLSVAAFNYATIDDLFENAKKHEAEPFFLILDGIEDPHNLGSILRTADA 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  KR +   +A +AK ++GA+EH+P  R++NL + + ++   G    G    +
Sbjct: 127 AGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNTVSELKDRGIWVFGTDM-A 185

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   +       ALI+G EGKG+ P  ++   SM  + M G +++LN S AA++ +Y
Sbjct: 186 GEDYRRWDAKGATALIIGNEGKGISPLLKKKVDSMLTIPMTGHVQSLNASVAASLLMY 243


>gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
           reducens MI-1]
          Length = 243

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKI 104
           N  + G + V  AL    R I +++  K A    L     L      P++ V    +DK+
Sbjct: 2   NEMIAGRNPVREALR-AGRPINKVVMAKGAGTGPLAEIVKLAKQNNIPLQMVERSHLDKM 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+    A      L+ +            +++LD +NDPHN+GAI+R+A A 
Sbjct: 61  -NPGVPHQGVIAYAAAKQYVELEELLEIARAKGQDPFIIMLDEINDPHNLGAIMRTADAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  +R S + ++ +AK+++GA+E++P  R++NL   ++++   G   +G   D  
Sbjct: 120 GAHGVIIPQRRSVALTSTVAKASAGAVEYVPVARVTNLDQTIRQLKDEGLWVVGADMDGS 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +          + L++G EGKGL    +E    +  L M G + +LN S AAA+ +Y   
Sbjct: 180 EIYWDAKLTGPLLLVIGGEGKGLGRLIKERCDMLVRLPMAGRVGSLNASVAAALLVYEVV 239

Query: 278 NHF 280
              
Sbjct: 240 RQR 242


>gi|284053857|ref|ZP_06384067.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
          Length = 307

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 15/256 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-----TKNALARLDWDAN 86
           + +     S  T  PE   +YG HTV AAL N  R + ++       +      L  +A 
Sbjct: 38  RRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNRVWVISQLRSDTRFQPLLQEAK 96

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139
                 V     Q +D+I  + A HQG+  +  P     L  +        +  +L+ +D
Sbjct: 97  AKGAI-VDGASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVD 154

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+GAI+R+A A    G+I  +R +   +A + K A+GALE  P  R+ NL    
Sbjct: 155 GITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTF 214

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++ S GF   G  +   +PL +   +  I L++G+EG+GL     E    +  + + G+
Sbjct: 215 TELKSAGFWIYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGV 274

Query: 260 IKALNVSNAAAVALYI 275
             +LNVS A  +ALY 
Sbjct: 275 TPSLNVSVATGMALYE 290


>gi|89100738|ref|ZP_01173593.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89084555|gb|EAR63701.1| tRNA/rRNA methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 247

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 48  NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             F+ G + V  AL       KIF    ++    +        +   V+ VP + +D++ 
Sbjct: 3   QDFIIGKNPVLEALRAERDINKIFIAEGSQGGQMQQVIGLAKTNGVLVQFVPKKKLDQMA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E +HQG+    A      +D +         +   ++LD + DPHN+G+I+R+A A  
Sbjct: 63  --EGIHQGVVAAVAAYEYAEVDDLFAAAEKKNEAPFFLLLDEIEDPHNLGSIMRTADAVG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  KR +   +A +AK+++GA+EHIP  R++NL   + ++   G    G  +   +
Sbjct: 121 AHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLARTIDELKEKGVWIAGTDAKGSE 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +      + L++G+EGKG+    ++    + HL M G + +LN S AAA+ +Y    
Sbjct: 181 DYRRFDGTMPLGLVIGSEGKGMGRLIRDKCDFLIHLPMAGHVTSLNASVAAALLMYEVYR 240


>gi|15838579|ref|NP_299267.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|52783331|sp|Q9PC00|RLMB_XYLFA RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|9107096|gb|AAF84787.1|AE004018_3 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 249

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ G++ V +++ N +  + ++L    +KN+      +        V+ V  Q +D
Sbjct: 3   KKNQWIVGINAVVSSIENDAEHVCEVLVEAGSKNSRLLDIEENARRKGIEVRRVTTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A +       L   +DA     LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S   +A + K++SGA + +P I + NL  +L+++        GL  +
Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLEGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L       K+AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+ 
Sbjct: 182 AETSLYALDLRGKVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|291571381|dbj|BAI93653.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 312

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 120/256 (46%), Gaps = 15/256 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA-----TKNALARLDWDAN 86
           + +     S  T  PE   +YG HTV AAL N  R + ++       +      L  +A 
Sbjct: 38  RRRDRPVASAETEPPEEDLIYGRHTVLAALENG-RSLNRVWVISQLRSDTRFQPLLQEAK 96

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139
                 V     Q +D+I  + A HQG+  +  P     L  +        +  +L+ +D
Sbjct: 97  AKGAI-VDGASYQRLDQIT-RGASHQGIVAQVTPYKYWDLTTLITQAKSANSQPVLVAVD 154

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DPHN+GAI+R+A A    G+I  +R +   +A + K A+GALE  P  R+ NL    
Sbjct: 155 GITDPHNLGAIIRTAEAIGAQGLILPQRRAVGINATVMKVAAGALETFPVARVINLNRTF 214

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++ S GF   G  +   +PL +   +  I L++G+EG+GL     E    +  + + G+
Sbjct: 215 TELKSAGFWIYGTVAGEYQPLYKADLSGAIVLVVGSEGEGLSHAIAENCDVLLSIPLSGV 274

Query: 260 IKALNVSNAAAVALYI 275
             +LNVS A  +ALY 
Sbjct: 275 TPSLNVSVATGMALYE 290


>gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Synechococcus sp. CB0205]
          Length = 406

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 124/271 (45%), Gaps = 13/271 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL- 78
           +++ R   +         +  R  + P +  ++G H   AAL +  R + ++  T     
Sbjct: 43  FSRDRDQAKPIAVEVPVGEAERFNAYPADDLIWGRHAAQAALESG-RPVHRIWCTPEMRF 101

Query: 79  -ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DA 128
             R              V+ V    + ++    AVHQG+ ++ A   +  L         
Sbjct: 102 QPRFLQLLREAKSGGVLVEEVTWSRLGQLT-NGAVHQGIVMQAAAADTLDLGTLIDGCRD 160

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    LLM LD + DPHN+GAI+RSA A    G++  +R S   +  +AK A+GALEH+P
Sbjct: 161 LGEPPLLMALDGITDPHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLP 220

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R+ NL  AL  + + G++ IGL+ +    L +   +  + ++ G+EG GL   T++  
Sbjct: 221 VARVVNLNRALDSLKNEGYRVIGLAGEGSVALSEADLDGPLVVVTGSEGDGLSMLTRKHC 280

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +  + + G   +LN S A A+ LY     
Sbjct: 281 DQLVRIPIRGATPSLNASVATAMVLYEVARR 311


>gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 315

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 138/295 (46%), Gaps = 28/295 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++  K  H AKL R  R+           RH  +   + + G + V   L
Sbjct: 35  KGPTPKAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVVECL 82

Query: 62  NN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +   P+  ++ +  T+N  ARL     +      P+  +    +D++ G   +HQG+ L+
Sbjct: 83  HAKVPATSLYIVQGTRN-DARLSEAVAIANSRNIPILEIQRHEMDRMTG-NGMHQGIGLQ 140

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P        +           + ++LD++ DP N+GA++RS  AF   G+I  +R S 
Sbjct: 141 IPPYKYADFHELMDRAKDAGEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSA 200

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKI 229
           S +AV  ++++G    +P  R++N+T  +Q+    G+Q +GL +  +  L+      D +
Sbjct: 201 SVTAVAWRTSAGTAARLPVARVTNVTRTVQEFQQAGYQVVGLDAGGEHTLDTYTGGKDPV 260

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
            +++G+EGKG+    +E    +  + M   +++LN S AA   L  +  Q   AK
Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTAWVESLNASVAAGAVLSEFARQRRAAK 315


>gi|167751286|ref|ZP_02423413.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
 gi|167655793|gb|EDR99922.1| hypothetical protein EUBSIR_02272 [Eubacterium siraeum DSM 15702]
          Length = 254

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 12/237 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVG 106
              +YG + V+ AL    + I  +   K A       A        VK      +  + G
Sbjct: 18  EEIIYGKNAVTEALK-AEKPIDTVFVLKGAQGMNQIIALAKKQGIVVKDAGEDKLKALCG 76

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  H G+A   + +   T++ +            +++ D + DPHN+GAI+R+A A   
Sbjct: 77  DK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAAGA 134

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG+I  KR S + +  + K+++GA   I   R+SNL D ++ +   G    G  +D   P
Sbjct: 135 DGVIIPKRRSATVNPTVFKTSAGAAAWIKIARVSNLVDTIKTLKKHGVWVYGAEADG-TP 193

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +++   +  +AL++G+EG GL    +E    +  L M G + +LN S  A + +Y  
Sbjct: 194 IDKADLSGALALVIGSEGFGLGKLVKENCDVVLSLPMFGKVNSLNASVCAGILMYEA 250


>gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 264

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 11/237 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +G H V A L++    + QL  +        R   +    H  PV T  P  ++  + +E
Sbjct: 28  WGFHAVYALLSHRPATVAQLFISPRRDDQRIRELLELAARHGIPVHTEIPADLN--LEEE 85

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+         PTL+ +      + +QLL+ LD + DP N+GAI+R+A AF  DG+
Sbjct: 86  ISHQGVVARVKATGQPTLEGLLASLQPKENQLLLALDSIQDPRNLGAIIRTAAAFGADGL 145

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S   +  + K+A+G L  +   R++NL+ +L ++   GF   G    + + L Q
Sbjct: 146 LIPKDRSAPLTGTVMKAAAGTLPLLTICRVTNLSQSLAQLKKHGFWIYGAGGQAPQQLHQ 205

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  I L++G E KGLRP        +  + M   +++LNV+ A  V L   +  
Sbjct: 206 TSFSGPICLVMGNEQKGLRPLVSRHCDHLVAIPMAAGVESLNVAVATGVILSEIRRQ 262


>gi|254784758|ref|YP_003072186.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
 gi|237686894|gb|ACR14158.1| 23S rRNA-methyltransferase RlmB [Teredinibacter turnerae T7901]
          Length = 247

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDK 103
           +   ++G+H V + L    ++I +L   K+    R+     +   H   V  V  Q ++ 
Sbjct: 2   KTDVIFGIHAVQSLLKTAPQRISELQVVKDRQDQRIKKLLAMAEAHGVRVSLVNRQQLES 61

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             G +  HQG+     P        L   +  +    L++VLD V DPHN+GA +RSA A
Sbjct: 62  AAG-DGNHQGVIAYAKPGKALDEKGLLDLIAQMEEDPLILVLDGVTDPHNLGACMRSADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  K  S   +    K A GA E +P + ++NL  AL K+   G    G + ++
Sbjct: 121 AGVHAVVIPKDNSAGLNETARKVACGAAETVPLVVVTNLARALNKLQDAGLWVAGAAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +          +++GAEG G+R  T+ET   +  + M G + +LNVS A  V L+  
Sbjct: 181 DADIYSADLTGPRVIVMGAEGDGMRRLTKETCDLLIKIPMMGSVSSLNVSVATGVVLFEV 240

Query: 277 QNHFA 281
                
Sbjct: 241 LRQRN 245


>gi|83942841|ref|ZP_00955302.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
           sp. EE-36]
 gi|83846934|gb|EAP84810.1| RNA methyltransferase, TrmH family protein, group 3 [Sulfitobacter
           sp. EE-36]
          Length = 258

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 144/249 (57%), Gaps = 7/249 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++ +     + ++L+G+H V  AL NP+R+  +L+ T NA  +L+           + V
Sbjct: 10  KEQEKKADANQTVWLFGLHAVRDALENPAREKIKLMVTPNAQIKLEEAIARA-GIEPEVV 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
            P+     +   +VHQG  LE  PL    L  V     +  +++LD V DPHN+GAILRS
Sbjct: 69  DPRKFRPPLDPGSVHQGAVLEVKPLSWGALKDVCIGAEAPRVLLLDRVTDPHNVGAILRS 128

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       ++  + ++  E+  LAK+ASGALE  PY+R+ NL DA++++ S G+  +GL 
Sbjct: 129 AEVLGASAVVGMRHHAAPETGALAKTASGALERQPYLRVRNLADAIKELQSMGYLVLGLD 188

Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++   +E  +   ++  +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAAA
Sbjct: 189 GEADMTVESALVGKRDRPVALVLGAEGPGLREKTKETVDALVRIDAGGGFGSLNVSNAAA 248

Query: 271 VALYITQNH 279
           +ALY +++H
Sbjct: 249 IALYASRDH 257


>gi|330816741|ref|YP_004360446.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
           BSR3]
 gi|327369134|gb|AEA60490.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia gladioli
           BSR3]
          Length = 249

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKI--VG 106
            LYG H V+A L + +  + ++L  +    R   D         V+ +      ++  + 
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMIDFLATAKEAGVRLIAADE-TRLWGLA 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+      L     L+  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 65  HTERHQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG + D+   L 
Sbjct: 125 IIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAGASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   + ++ M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|296268496|ref|YP_003651128.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
           DSM 43833]
 gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
           DSM 43833]
          Length = 322

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 118/254 (46%), Gaps = 12/254 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPFPVKTV 96
           SR   +     + G + V  AL    P+R ++       +   R           P+  V
Sbjct: 66  SRPFLEEGAEIIAGRNPVVEALRADIPARVLYVAYRIDTDDRVREAIKIAADRDIPMVEV 125

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGA 149
               +D++ G  AVHQG+ LE  P      D +  +        L++ LD V DP N+GA
Sbjct: 126 SRDRLDQLTG-GAVHQGIGLEIPPYEYAHPDDLVEAAHQAGEVPLIVALDGVTDPRNLGA 184

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I RSA AF   GI+   R S   ++   K+++G L  +P  R SNLT  L+     G   
Sbjct: 185 IARSAAAFGAHGIVVPSRRSVGVTSGAWKTSAGTLATLPVARASNLTQTLKAYRKEGLFV 244

Query: 210 IGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL  D+K+ + +  +  + + L++G+EGKGL    +ET   +A + M   +++LN   A
Sbjct: 245 VGLDGDAKEEIADNTLLTEPLVLVVGSEGKGLSRLVRETCDMLARIPMGERVESLNAGVA 304

Query: 269 AAVALYITQNHFAK 282
           A +ALY       +
Sbjct: 305 AGIALYEIARRRRQ 318


>gi|315037582|ref|YP_004031150.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325956064|ref|YP_004286674.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|312275715|gb|ADQ58355.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325332629|gb|ADZ06537.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|327182878|gb|AEA31325.1| tRNA-rRNA methyltransferase [Lactobacillus amylovorus GRL 1118]
          Length = 250

 Score =  241 bits (617), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALNNPS----RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L   +     K+F     +   A   +         V+TVP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTHNSDQINKVFLQHGVQEDFANQVYAITKKKRLVVQTVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V +   HQGL L  +      LD +            L++LD + DPHN+G+ILRSA A 
Sbjct: 66  V-EGGNHQGLVLAISSFEYANLDQLLDQFDQEGKEPFLLMLDSIEDPHNLGSILRSADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   N K  L++G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 VDYREWNANGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAF 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|169824090|ref|YP_001691701.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302381082|ref|ZP_07269542.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           ACS-171-V-Col3]
 gi|303235343|ref|ZP_07321961.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           BVS033A4]
 gi|167830895|dbj|BAG07811.1| putative tRNA/rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302311129|gb|EFK93150.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493657|gb|EFL53445.1| RNA methyltransferase, TrmH family, group 3 [Finegoldia magna
           BVS033A4]
          Length = 244

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 12/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +L G + V  AL      +  L   K  L    +            V+ V  + I+K   
Sbjct: 3   YLVGRNPVMEALE-MDMGVTNLYIQKGELKGFIKKIEKKAYDMGIKVEYVDKKYIEKFAE 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+  +        +D +            L++LD + DPHN+G+I+R+A    C
Sbjct: 62  NTA-HQGVMAKMPSFGYSNVDEMIIYAKKRNEDPFLIILDEITDPHNLGSIIRTAEVAGC 120

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   +A   K+++GA+ +I   R++N+T  +  +        G   ++ + 
Sbjct: 121 HGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEHNIWIYGACGEASQT 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             Q      I L++G EGKG+    +E    +  + M G  ++LN SNAA++ +Y     
Sbjct: 181 HTQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQ 240

Query: 280 F 280
            
Sbjct: 241 R 241


>gi|320333743|ref|YP_004170454.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319755032|gb|ADV66789.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
           maricopensis DSM 21211]
          Length = 242

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 11/235 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + LYG + V  AL +   ++ ++L  +        +        V+  P   +D++ G  
Sbjct: 1   MLLYGRNPVLEALRDG--RVTEVLVARGVEDAFVRELK-ATDVRVRFAPRIELDQLAGTT 57

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+  E   L   T+D + +         L+++LD + DP N GAI+RSA      G
Sbjct: 58  A-HQGVIAEVEDLEWATVDDILDRAESRGEDLLVVLLDGITDPRNFGAIIRSAEVLGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R S   S V+AK+A+GA  ++P  +  NL   + ++ + G    G + ++ + L 
Sbjct: 117 VIVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKTDGVWVYGAAGEAARDLR 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     K+AL++GAEG+GLR   +E    +  + + G +++LN S AA++ LY  
Sbjct: 177 ELDYRGKLALVIGAEGEGLRRLVREKCDELVSIPVRGRVQSLNASVAASILLYQA 231


>gi|209515693|ref|ZP_03264557.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
 gi|209503929|gb|EEA03921.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp. H160]
          Length = 247

 Score =  241 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKI--VG 106
            LYG H V+A + + +  +  +         R+           V+ +      ++  + 
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLQAAKDAGVRLIAADE-TRLWGLA 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +   HQG+      L     L+  LD +  S L++VLD V DPHN+GA LR A A     
Sbjct: 65  RTDRHQGVVARAGDLPLAQNLAELLDGITGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + D++K + 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAEKSVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL+LGAEG+G+R  T+ET   + H+ M G +++LNVS A+ V L+      A
Sbjct: 185 DTELDGPVALVLGAEGEGMRRLTRETCDVVMHIPMAGTVESLNVSVASGVCLFEAVRQRA 244


>gi|325517967|gb|EGC97790.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 247

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A L + +  + ++L  +    R   +   A       +       +  +  
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +     LS  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDIPLAQNLSELLDGINGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTSDEASATLH 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY   +   
Sbjct: 185 DTRLDGPVAIVMGAEGEGMRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQRR 244

Query: 281 AK 282
           AK
Sbjct: 245 AK 246


>gi|297587634|ref|ZP_06946278.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297574323|gb|EFH93043.1| RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 244

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 12/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +L G + V  AL      +  +   K  L    +            V+ V  + I+K   
Sbjct: 3   YLVGRNPVMEALE-MDMGVTNIYIQKGELKGFIKKIEKKAYDMGIRVEYVDKKYIEKFAE 61

Query: 107 KEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             A HQG+  +       ++D        +     L++LD + DPHN+G+I+R+A    C
Sbjct: 62  NTA-HQGVMAKMPSFGYSSVDEMIIYAKKINEDPFLIILDEITDPHNLGSIIRTAEVAGC 120

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  K  +   +A   K+++GA+ +I   R++N+T  +  +        G   ++ + 
Sbjct: 121 HGVIIPKHRACEVNATAIKTSAGAVFNIKIARVTNITTTINYLKEHNIWIYGACGEASQT 180

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             Q      I L++G EGKG+    +E    +  + M G  ++LN SNAA++ +Y     
Sbjct: 181 HTQANLKGPIGLVIGNEGKGISRLVRENCDQLIKIPMYGKTESLNASNAASILIYEIIRQ 240

Query: 280 F 280
            
Sbjct: 241 R 241


>gi|167582034|ref|ZP_02374908.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis TXDOH]
          Length = 247

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY       
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 244


>gi|46906474|ref|YP_012863.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|46879738|gb|AAT03040.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
           serotype 4b str. F2365]
          Length = 251

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD +             ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ 
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGSEGFGMSCLVREKCDFLVHLPMRGKVTSLNASVAASLL 238

Query: 273 LYITQN 278
           LY    
Sbjct: 239 LYEVYR 244


>gi|124267007|ref|YP_001021011.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124259782|gb|ABM94776.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 247

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTI--DKIVG 106
            L+G H V+  +      + +L        AR+           V+ +    +    + G
Sbjct: 7   ILFGFHAVTVRVKTAPGSVVELYIDGTRRDARMRQFIERAKEAGVRLIESDELRLQALCG 66

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+  +         L   LD V    LL+VLD V DPHN+GA LR A       
Sbjct: 67  THR-HQGVVAKVTAAPATKSLDDLLDTVEGPPLLLVLDGVTDPHNLGACLRVADGAGAHA 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG + D+ + L 
Sbjct: 126 VIAPKDHAVGINATVAKVASGAAETVPYFMVTNLARTLGELKERNIWVIGTADDAPRTLY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  +AL+LGAEG+G+R  T++T   +  L M G +++LNVS A+ + LY       
Sbjct: 186 AADLRQAVALVLGAEGQGMRQLTRKTCDELVSLPMAGAVESLNVSVASGIGLYEAVRQRG 245


>gi|317123114|ref|YP_004103117.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           marianensis DSM 12885]
 gi|315593094|gb|ADU52390.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           marianensis DSM 12885]
          Length = 298

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 10/241 (4%)

Query: 51  LYGVHTVSAAL--NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G   V   L   +P  ++      + A              PV+ V P  I++    +
Sbjct: 51  VEGRRPVLELLGSAHPVHRVLVARGRRGAAIAELEQRARARGVPVEEVDPVEIERRAQTD 110

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    APL    L  +           LL++   + DPHN+GA+ R+A A    G
Sbjct: 111 -THQGVLALAAPLPRYDLLDLLDRAAGAGQPPLLVICAEIQDPHNLGAVFRTAEAAGAHG 169

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
            +     S    A + KS++GAL H+P   ++NL  +++++   G   +    +  +P +
Sbjct: 170 AVVPVHRSAPLGATVFKSSAGALVHLPVAEVTNLARSVEQLKERGVWVVAADPEGAEPYD 229

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      +A++LG+EG+G+ P  +        + M G + +LNVS AA V L+       
Sbjct: 230 RWDWTQPVAVVLGSEGRGVPPLVRRRCDGRVTIPMAGRVGSLNVSVAAGVLLFEAARQRR 289

Query: 282 K 282
           +
Sbjct: 290 Q 290


>gi|89893196|ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51]
 gi|219666469|ref|YP_002456904.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
 gi|89332644|dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536729|gb|ACL18468.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
          Length = 246

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 13/244 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
           +  +YG + V   L +    + +LL      A    D          P + V    +D++
Sbjct: 3   DEIVYGRNAVWELLQSGK-PVNKLLLQGEGTAGRFQDIVSHARAQKIPFQFVDKAALDRL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             K A HQG+    AP     +D +            ++VLD V DPHN+GA++R+A A 
Sbjct: 62  TEK-AKHQGILAYVAPREYAEVDDILALAGEKGEDPFILVLDEVEDPHNLGALIRTADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S S +A +AK+++GA+EH+   R+ NL   L+ +   G    G  ++  
Sbjct: 121 GVHGVIIPKRRSVSLTATVAKTSAGAVEHVLVARVGNLVQTLKDLQKAGCWVSGAEAEGT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    ++   ++ +++G+EGKGL    +ET   +  L M G I +LN S A ++ +Y   
Sbjct: 181 EVYRSDLTGARV-IVIGSEGKGLSRLVKETCDEIVSLPMKGRINSLNASVAGSILMYEVL 239

Query: 278 NHFA 281
               
Sbjct: 240 RQRG 243


>gi|83720095|ref|YP_443037.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|167620200|ref|ZP_02388831.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis Bt4]
 gi|257139267|ref|ZP_05587529.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83653920|gb|ABC37983.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           thailandensis E264]
          Length = 247

 Score =  241 bits (616), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDSTRRDRRMQDFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD V    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGVAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY       
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 244


>gi|291556790|emb|CBL33907.1| rRNA methylase, putative, group 3 [Eubacterium siraeum V10Sc8a]
          Length = 254

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 12/237 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVG 106
              +YG + V+ AL    + I  +   K+A       A        VK      +  + G
Sbjct: 18  EEIIYGKNAVTEALK-AEKPIDTVFVLKSAQGMNQIIALAKKQGIVVKDAGEDKLKALCG 76

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  H G+A   + +   T++ +            +++ D + DPHN+GAI+R+A A   
Sbjct: 77  DK--HGGVAAALSAVSYCTVEDILANAESKGKPPFIIICDEIQDPHNLGAIIRTAEAAGA 134

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG+I  KR S + +  + K+++GA   I   R+SNL D ++ +   G    G  +D   P
Sbjct: 135 DGVIIPKRRSATVNPTVFKTSAGAAAWIKIARVSNLVDTIKTLKKHGVWVYGAEADG-TP 193

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +++   +  +AL++G+EG GL    +E    +  L M G + +LN S  A + +Y  
Sbjct: 194 IDKADLSGALALVIGSEGFGLGKLVRENCDVVLSLPMFGKVNSLNASVCAGILMYEA 250


>gi|57866117|ref|YP_187768.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|81675394|sp|Q5HRM1|TRMHL_STAEQ RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|90110722|sp|Q8CTT9|TRMHL_STAES RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase
 gi|57636775|gb|AAW53563.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis RP62A]
          Length = 249

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++L       +   D           V+TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDF 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A
Sbjct: 61  LA--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  +++
Sbjct: 119 SGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  + +++G+EG+G+     +       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 YR 240


>gi|27467212|ref|NP_763849.1| putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
           ATCC 12228]
 gi|242241863|ref|ZP_04796308.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|293367907|ref|ZP_06614545.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27314754|gb|AAO03891.1|AE016744_294 putative tRNA/rRNA methyltransferase [Staphylococcus epidermidis
           ATCC 12228]
 gi|242234641|gb|EES36953.1| RNA methyltransferase [Staphylococcus epidermidis W23144]
 gi|291317936|gb|EFE58344.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329738058|gb|EGG74279.1| RNA methyltransferase, TrmH family, group 3 [Staphylococcus
           epidermidis VCU045]
          Length = 255

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++L       +   D           V+TVP   +D 
Sbjct: 8   EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDF 66

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A
Sbjct: 67  LA--NAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  +++
Sbjct: 125 SGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGTEANN 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  + +++G+EG+G+     +       + M G + +LN S AA++ +Y  
Sbjct: 185 ATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEV 244

Query: 277 QN 278
             
Sbjct: 245 YR 246


>gi|295676348|ref|YP_003604872.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1002]
 gi|295436191|gb|ADG15361.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1002]
          Length = 247

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKI--VG 106
            LYG H V+A + + +  +  +         R+           V+ +      ++  + 
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLQAAKDAGVRLIAADE-TRLWGLA 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +   HQG+      L     L+  LD +  S L++VLD V DPHN+GA LR A A     
Sbjct: 65  RTERHQGVVARAGDLPLAQNLAELLDGISGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + D++K + 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGDAQKSVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   +  +AL++GAEG+G+R  T+ET   + ++ M G +++LNVS A+ V L+      A
Sbjct: 185 ETELDGPVALVMGAEGEGMRRLTRETCDVVMNIPMAGTVESLNVSVASGVCLFEAVRQRA 244


>gi|325202280|gb|ADY97734.1| RNA methyltransferase, TrmH family, group 3 [Neisseria meningitidis
           M01-240149]
          Length = 234

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 9/226 (3%)

Query: 63  NPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              + I +L   +   +   R   +        V       ++ I  K A HQG+     
Sbjct: 3   QNPKSIVELYVQEGKNDVRTREVLEKAANENIRVYFADADRLNAI-SKGARHQGVVGFID 61

Query: 120 PL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                  L   L+ +    LL++LD + DPHN+GA LR+A A     +I  K  S   +A
Sbjct: 62  ASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGVHAVIAPKDKSAGLNA 121

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            ++K ASGA E +PYI ++NL   L+++  +G   IG        L      D  A ++G
Sbjct: 122 TVSKVASGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGNADLYHCDLPDSAAWVMG 181

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            EG G+R  T+E    +  + M G ++++NVS +A + L  T+   
Sbjct: 182 NEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQR 227


>gi|300362338|ref|ZP_07058514.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353329|gb|EFJ69201.1| RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 251

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 13/238 (5%)

Query: 48  NLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           + F+YG ++    L     N   K+F     +   A   +         V+  P   +D+
Sbjct: 6   DEFVYGRYSGIDFLKTQDANLINKVFLQNGVQEEFANQVYQLARKKNLVVQNAPKNKLDQ 65

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +V     HQGL L  AP     LD + +          +++LD + DPHN+G+ILR+  A
Sbjct: 66  MV-NHENHQGLVLTVAPFEYADLDKLLDKFDQDGKDPFILMLDSIEDPHNLGSILRTCDA 124

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  KR +   ++V+AK+++GA++++P  R++NL    + +   G+   G +   
Sbjct: 125 TGVDAVIIPKRRATGLTSVVAKTSTGAIDYVPVARVNNLVQITKMLKKRGYWIFGTAMKG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +   N K  L++G EGKG+ P   +       + M G +++LN S A  V LY
Sbjct: 185 E-DYRKWNANGKTVLVIGNEGKGISPLLLKQMDQTLTIPMVGHVQSLNASVATGVLLY 241


>gi|227879319|ref|ZP_03997185.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
           JV-V01]
 gi|256849114|ref|ZP_05554547.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|262047595|ref|ZP_06020550.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
           MV-3A-US]
 gi|227861088|gb|EEJ68741.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus crispatus
           JV-V01]
 gi|256713890|gb|EEU28878.1| tRNA-rRNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|260572171|gb|EEX28736.1| TrmH family RNA methyltransferase [Lactobacillus crispatus
           MV-3A-US]
          Length = 251

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALN-NPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L    + KI ++      +   A   +         V+ VP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L  +      LD + +          L++LD + DPHN+G+ILRSA A 
Sbjct: 66  VA-GGNHQGLVLAISSFEYADLDQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +     K  L++G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 TDYREWNAQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLYQAY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|197122685|ref|YP_002134636.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           K]
 gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
           K]
          Length = 256

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YGV+ V   L      + ++      T+ A               V+  P   +D++ 
Sbjct: 3   VVYGVNPVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRGAPRAKLDRLA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G +  HQG+    A      L+ +           LL+VLD V DPHN+GAI+RSA A  
Sbjct: 63  GTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +  +   +  +AK+++GA+E  P  R++N+   L+++   G  ++ L++D ++
Sbjct: 122 AHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVALAADGER 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           PL +       AL+LG+EG+G+RP  + T    A + M G + +L+VS +AAVALY    
Sbjct: 182 PLGEADLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|89069652|ref|ZP_01156989.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
 gi|89044732|gb|EAR50838.1| tRNA/rRNA metyltransferase [Oceanicola granulosus HTCC2516]
          Length = 259

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 9/239 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            L+L+G+H V  AL NP R   +L+ TKNAL RL  DA        +   P+     +  
Sbjct: 21  TLWLFGLHAVRDALENPRRDKRRLVVTKNALDRLG-DAVGQAGLEPEISDPRKFAAPLDP 79

Query: 108 EAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +VHQG ALE  PL   +L  V          +++LD V+DPHN+GAILRSA  F    +
Sbjct: 80  GSVHQGAALEVRPLDWGSLADVCTAGSDLPPRVVLLDRVSDPHNVGAILRSAEVFGARAV 139

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +R+S  E+  LAK+ASGALE  PY+R++NL  A++++   G+   GL+ +++  +  
Sbjct: 140 IGVQRHSAPETGALAKAASGALERQPYLRVTNLARAMEELKDMGYLVAGLAGEAETDIRP 199

Query: 223 EI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +   ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAAVALY +++
Sbjct: 200 ALDGHRDRPVALVLGAEGPGLRDKTRETCDVLVRIDAAGGFGSLNVSNAAAVALYASRS 258


>gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Puerto Rico]
 gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Virginia]
          Length = 251

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 13/245 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVG 106
           +++ G H   AAL NP+R    +L T   L +    A +     V    V  + I KI+G
Sbjct: 1   MWICGRHVCIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILG 60

Query: 107 KEAV-HQGLALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAV 155
              + HQG+AL    L       +R           +  +++LD V D +N+GAI+RSA 
Sbjct: 61  HGGMAHQGIALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAA 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  D +I  + +SPSES  + K++SGA + +P +++ NL   ++ +   G+   G+ + 
Sbjct: 121 CFDADAVILPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAG 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             K L +    ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVSNAAA+ALY 
Sbjct: 181 GDKALHEISFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYS 240

Query: 276 TQNHF 280
           +    
Sbjct: 241 SYLQL 245


>gi|260753219|ref|YP_003226112.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552582|gb|ACV75528.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 249

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 9/234 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +SR+ + P +   +G H V AALNNP R I ++ AT+ ALA  + D       PV     
Sbjct: 3   RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLSDV 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRS 153
             + + V  +A HQG+ +E  PL    L  +      + + L+VLD V DPHN+GAILRS
Sbjct: 59  ADLGRFVPNDAPHQGIVIEVDPLPDIWLSDLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   GIIT  R++P ES  LA++ASGALE +P++R++NL  AL ++   G+  IGL+
Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             S+  L Q + + K AL+LGAEG+GLR  T+     +A L +   I++LNVSN
Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|255263708|ref|ZP_05343050.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
           R2A62]
 gi|255106043|gb|EET48717.1| RNA methyltransferase, TrmH family, group 3 [Thalassiobium sp.
           R2A62]
          Length = 260

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 92/249 (36%), Positives = 144/249 (57%), Gaps = 9/249 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+  +  E ++L+G+H V  AL NP R   +L+ TKNA  +L  D       P +  
Sbjct: 10  KERSKRAAAAETVWLFGLHAVRDALLNPKRVKLRLIVTKNAHDKLAEDIGASGMEP-EMS 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE   L    L+ V       +  +++LD V DPHN+GA+L
Sbjct: 69  DPRKFAAPIDPQSVHQGAALEVKGLDWGKLEDVCLGEEGRAPRVVLLDRVTDPHNVGAVL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    ++   R++  E+  LAK+ASGALE  PY+R+ NL DA++ +   G+  +G
Sbjct: 129 RSAEVFGASAVVAMSRHAAPETGALAKTASGALERQPYVRVRNLADAMETLKGMGYIVLG 188

Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L  +++  +   +   ++  +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNA
Sbjct: 189 LDGEAEGTIGAALEGKRDRPVALVLGAEGPGLREKTKETCDALVKIDFAGGFGSLNVSNA 248

Query: 269 AAVALYITQ 277
           AAVALY ++
Sbjct: 249 AAVALYASR 257


>gi|90414465|ref|ZP_01222441.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90324470|gb|EAS41029.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 245

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKI 104
           N  ++G+H V A L     ++ ++   K+    RL             ++    + +D  
Sbjct: 3   NDMIFGIHAVKAVLATDPVRLIEVFVLKDRQDDRLMPLLTELKDLGITIQQAGRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K A HQG+     P   L    LDA+     + LL++LD V DPHN+GA LR+A A  
Sbjct: 63  A-KGASHQGIIARVKPAKQLNEHDLDAILEGSENPLLLILDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  +   +A  +K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 AAAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +        +A+++GAEG+G+R  T+ET   +  + M G + +LNVS A  + L+    
Sbjct: 182 DIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 316

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 28/294 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++  K  H AKL R  R+           RH  +   + + G + V   L
Sbjct: 35  KGPTPKAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVIECL 82

Query: 62  NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +   P+  ++    T+N   RL    ++      P+  V    +D++ G   +HQG+ L+
Sbjct: 83  HAKVPATTLYIAAGTRN-DKRLSEAVSMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQ 140

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     ++ +           + ++LD++ DP N+GA++RS  AF  DG+I  +R S 
Sbjct: 141 IPPYKYAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI 229
           S +AV  ++++G    +P  R +N+T  +++    G+Q +GL +     L+  E   D +
Sbjct: 201 SVTAVAWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPV 260

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
            +++G+EGKG+     ET   +  + M G +++LN S AA   L  +  Q   A
Sbjct: 261 VIVIGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRVA 314


>gi|297582428|ref|YP_003698208.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297140885|gb|ADH97642.1| RNA methyltransferase, TrmH family, group 3 [Bacillus
           selenitireducens MLS10]
          Length = 255

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 117/245 (47%), Gaps = 12/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQT 100
           +     ++YG + V   L +    + ++   ++++                 V+TVP + 
Sbjct: 2   TDANQDYVYGKNPVIEVLRSGQ-TVHKVWIAEDSMKGQMNQVLGLCKKMNVQVQTVPRKR 60

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D++    A HQG+  + A      +D +             +VLD + DPHN+G+ILR+
Sbjct: 61  LDQMADGIA-HQGVIAQAAAYEYAEIDDLFARAKERGEDPFFLVLDELEDPHNLGSILRT 119

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G+I  KR S   ++ +AK+++GA+ H+P  R++NL   + ++   G   +G  
Sbjct: 120 ADASGAHGVIIPKRRSVGLTSTVAKTSAGAIAHVPVARVTNLARTMDELKKQGLWFVGTD 179

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +      E    +  +AL++G+EGKG+    +E    +  + + G + +LN S AA++ +
Sbjct: 180 AKGDVSYEGMTVDLPLALVIGSEGKGMSRLVKEKCDFLVSIPLMGKVTSLNASVAASLLM 239

Query: 274 YITQN 278
           Y    
Sbjct: 240 YEVLR 244


>gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
 gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
          Length = 257

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 117/274 (42%), Gaps = 21/274 (7%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           + + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      
Sbjct: 3   RMKNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--V 49

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           I +L+ +       DW         +  VP + I K++ +    QG+            +
Sbjct: 50  ITELIVSDQTDLPKDWTVT---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---E 102

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                   ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+
Sbjct: 103 IALTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHL 162

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +    
Sbjct: 163 PIVK-GNLEEWVDKLKEKNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEVLAK 221

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 222 CDQNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 255


>gi|56751982|ref|YP_172683.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56686941|dbj|BAD80163.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 519

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 14/270 (5%)

Query: 25  RNHRDYKKMQSFNQKSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--- 80
           R  RD +  +  N          ++  +YG H V AAL   +R + ++  T         
Sbjct: 217 RPSRDRELNREVNTSPAGDQEATDHELIYGRHAVLAALQ-GNRTLNRIWVTPRLRYESTF 275

Query: 81  -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132
               DA       V  VP + I ++    AVHQG+A + AP     L  +          
Sbjct: 276 LELIDAAKAGGAVVDEVPVERIRQLTD-GAVHQGIAAQVAPYPYQELSDLIAQAKAATTD 334

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V D + DPHN+GAI+R+A A    G++  +R +   +A +AK A+GALE  P  R+
Sbjct: 335 PVIVVADGITDPHNLGAIIRTAGALGAHGLVIPQRRAVGVTAAVAKVAAGALESFPVARV 394

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            NL  AL+++   GF   G + ++K+ + +   +  + L++G+E +GL   T+E    + 
Sbjct: 395 VNLNPALEELKDAGFWIYGAAGEAKQSIHETSFSGPVVLVVGSEDEGLSLLTRERCDHLI 454

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + + G   +LN S AA + LY       +
Sbjct: 455 SIPLRGKTNSLNASVAAGMVLYEVSRQRQQ 484


>gi|319399720|gb|EFV87969.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus epidermidis FRI909]
          Length = 249

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 13/242 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           E++ + G H V  A+ +    I ++L       +   D           V+TVP   +D 
Sbjct: 2   EDIVIVGRHAVKEAIISGH-AINKILIQDGIKKQQINDILKNAKSQKLIVQTVPKSKLDF 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVA 156
           +    A HQG+A   AP      D     Q        +++LD + DPHN+G+ILR+A A
Sbjct: 61  LA--NAPHQGVAALVAPYEYANFDEFLQKQKKKDRYSTVIILDGLEDPHNLGSILRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  KR S + +  +AK+++GA++H+P IR++NL+  + ++   GF   G  + +
Sbjct: 119 SGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDSGFWIAGTEASN 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +  + +++G+EG+G+     +       + M G + +LN S AA++ +Y  
Sbjct: 179 ATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLMMYEV 238

Query: 277 QN 278
             
Sbjct: 239 YR 240


>gi|166031081|ref|ZP_02233910.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
           27755]
 gi|166028928|gb|EDR47685.1| hypothetical protein DORFOR_00763 [Dorea formicigenerans ATCC
           27755]
          Length = 252

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 12/249 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +     EN+ + G + V  A  +  P  K+F L   ++   R        H   V+ V  
Sbjct: 5   KDKHGNENM-IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTLVQFVDK 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
           + + ++  +   HQG+   TA      ++ +            L++LD + DPHN+GAI+
Sbjct: 64  ERLTQL-SQTGRHQGVIAYTAAYEYAQVEDMLALAKERGEDPFLILLDDIEDPHNLGAII 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G+I  KR +   +A +AK+++GA+ + P  +++NLT  ++++   G   + 
Sbjct: 123 RTANLAGAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTKTMKELKEKGLWFVC 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                +  + +      I L++G EG+G+    +ET   +A + M G I +LN S A  V
Sbjct: 183 ADMGGE-SMYKLNLTGPIGLVIGNEGEGVSRLVKETCDFVASIPMKGDIDSLNASVATGV 241

Query: 272 ALYITQNHF 280
             Y      
Sbjct: 242 LAYEIVRQR 250


>gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314]
 gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
           efficiens YS-314]
 gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
           efficiens YS-314]
          Length = 313

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 27/294 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++    +H  KL R  R         +K RH  + +   + G + V   L
Sbjct: 34  KGPTPKAEDRVYHA--AHKRKLERQRR---------EKGRHQRE-QTELVVGRNPVLECL 81

Query: 62  NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            +       L   + A    RL     L      PV  V    +D++ G   +HQG+ L 
Sbjct: 82  -HARVPSTALYVAEGAANDERLSESVRLAADRSIPVLEVNKLELDRMTG-NGMHQGIGLA 139

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +  +           + ++LD++ DP N+GA++RS  AF  +G+I  +R S 
Sbjct: 140 IPPFEYADIHDLLADAAQSPKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSA 199

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           S +AV  ++++G    +P  + +N+T  +++    G+Q +GL +     L+     D + 
Sbjct: 200 SVTAVAWRTSAGTAARVPVAKETNMTRTIKEFQKNGYQVVGLDAGGDHTLDTYDGTDNVV 259

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
           +++G+EGKG+    +E   ++  +     +++LN S AA V L  +  Q   A+
Sbjct: 260 IVVGSEGKGISRLVRENCDTIMSIPTEPWVESLNASVAAGVVLSEFARQRRLAQ 313


>gi|224023845|ref|ZP_03642211.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
           18228]
 gi|224017067|gb|EEF75079.1| hypothetical protein BACCOPRO_00562 [Bacteroides coprophilus DSM
           18228]
          Length = 250

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 15/248 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTID 102
            +N  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I+
Sbjct: 3   EKNEMIFGVRAVIEAIQAGKE-IDKVLVKKDIQSDLSKELFAVLKDTFIPVQRVPVERIN 61

Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  K   HQG+    +P+         P L     + LL++LD V D  N GAI R+  
Sbjct: 62  RITKK--NHQGVIAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGVTDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  +P  R +NLT+ ++ +   GF+ +  +  
Sbjct: 120 CAGVDAIIIPSKNSVSVNADAIKTSAGALHTLPVCRENNLTNTIKFLKESGFKIVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +        +I+GAE  G+  +          + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKADYQGPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYE 239

Query: 276 T--QNHFA 281
              Q  FA
Sbjct: 240 AVKQRGFA 247


>gi|302389955|ref|YP_003825776.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
 gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
          Length = 265

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 2/256 (0%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           + R  K +++  Q   +  +     + G+     ALN+    +  L+ + + L R     
Sbjct: 7   SKRQIKMIRALAQLKNYRKRHGLFLVEGLRATEEALNSDYL-VEFLVVSDDFLERHREKI 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  VP +  D +   EA  QG+                ++ L++ LD + DP 
Sbjct: 66  KEYENIKVYEVPRKVYDTLSDTEA-PQGIMAVVRMKNHELTSIYEDNFLIVALDGIKDPG 124

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG I+R+A A    GI+  K      +  + +S  G++ H+P I   +L   L ++   
Sbjct: 125 NIGTIIRTADAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLPVIEGVDLPVVLHELSQK 184

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             + +     ++K          + L+ G+E +G+ P+  + +T +  + MPG  ++LNV
Sbjct: 185 RAKIVVTHLGAEKSYFDADLTGPVVLVFGSEAEGVSPEILKISTEVVKIPMPGKAESLNV 244

Query: 266 SNAAAVALYITQNHFA 281
           + A  + L+       
Sbjct: 245 AVAGGIVLFEAVRQRN 260


>gi|54022403|ref|YP_116645.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 324

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 13/252 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVP 97
             +      + G + V   L    P+  ++  + T+N   RL     L       +  VP
Sbjct: 75  RKNDDGPELVLGRNPVVECLRAGVPATALYVAVGTEN-DERLTESVKLAADTGISILEVP 133

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAI 150
              +D++     +HQGLAL+  P      D +           LL+ LD+++DP N+GA+
Sbjct: 134 RTDLDRMSS-NGLHQGLALQVPPYRYAHPDDLAERARSSAEPALLVALDNISDPRNLGAV 192

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+   + G Q +
Sbjct: 193 IRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWANQGMQIV 252

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL +     L++    D   +++G+EGKGL    +ET  S+  + M G +++LN S AA 
Sbjct: 253 GLDAGGDTSLDEFDGTDPTVIVVGSEGKGLSRLVRETCDSVLSIPMAGPVESLNASVAAG 312

Query: 271 VALYITQNHFAK 282
           V L        +
Sbjct: 313 VVLSEIARQRRR 324


>gi|317056668|ref|YP_004105135.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
 gi|315448937|gb|ADU22501.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus albus 7]
          Length = 259

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 12/259 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--H 89
           K    N      ++ E   + G + V  AL      I  +     A   +     L    
Sbjct: 2   KENKINNNKTTDNKREEELILGRNPVIEALKADKL-IDMIFVNPEAKGSISLILKLAKER 60

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVN 142
             PVK V    +D + G  A HQG+    A      ++ + N          +++ D + 
Sbjct: 61  DIPVKQVREIKLDSMAG-GAAHQGVIAVGACAEYVEVEDILNIAREKSEDPFIIICDEIE 119

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAI+R+A A    GII  KR S S +  + K+++GA   +P  R+ NL  A+  +
Sbjct: 120 DPHNLGAIIRTAEAAGAHGIIIPKRRSASLNHTVFKTSAGAASWLPVARVPNLAAAVDDL 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G    G    + +          I L++G+EG G+    +E    +  L M G I +
Sbjct: 180 KKQGIWIYGTDG-AGQNYSGADLRGPIGLVVGSEGFGMGRLMKEKCDMLLSLPMAGKITS 238

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN S AA + +Y       
Sbjct: 239 LNASVAAGIFMYEIVRQRN 257


>gi|167562889|ref|ZP_02355805.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           oklahomensis EO147]
 gi|167570076|ref|ZP_02362950.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           oklahomensis C6786]
          Length = 247

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++   +    R   D           +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDQTRRDRRMQDFLHTAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGISGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   L 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY       
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMVGSVESLNVSVASGVCLYEAVRQRG 244


>gi|255282793|ref|ZP_05347348.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
           formatexigens DSM 14469]
 gi|255266567|gb|EET59772.1| RNA methyltransferase, TrmH family, group 3 [Bryantella
           formatexigens DSM 14469]
          Length = 245

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 111/243 (45%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A  +     K+F L   ++   R        H   ++ V  + +D++
Sbjct: 4   EELTIEGRNAVIEAFRSGKTIDKLFVLDGCQDGPVRTIIREAKKHDTLLQFVTKERLDQM 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      +D +         +  L++LD + DPHN+GAI+R+A   
Sbjct: 64  -SETGSHQGVIAYAAAYEYAEVDDILKIAEEKGEAPFLILLDGIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +    +  
Sbjct: 123 GAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLAKTIEELKQKGIWFVCADMNG- 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P+        I L++G+EG+G+    +E     A + M G I +LN S AA V  Y   
Sbjct: 182 TPMYDLDLKGPIGLVIGSEGEGVSRLVKEKCDFTASIPMKGDIDSLNASVAAGVMAYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 265

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 96/245 (39%), Positives = 144/245 (58%), Gaps = 10/245 (4%)

Query: 31  KKMQSFNQKSRHTSQ-----PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K ++    + +           ++ L+G H V AAL NP+R+  +L AT+  +  LD + 
Sbjct: 8   KALRGRAGRMKGGRGSGKGTAGHVRLWGRHPVEAALKNPARQHRKLWATREGIDSLDGE- 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVN 142
            LP  F V+      + ++V K+A HQGL LE  PL    LD V N   ++ ++VLD V 
Sbjct: 67  -LPPDFAVEYAEVTDLARLVAKDAPHQGLVLECEPLEDVFLDDVANGDPARPVVVLDQVT 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAILRSA AF    I+T  R++P E  VLAKSASGALE +P++R+ NL  AL ++
Sbjct: 126 DPHNVGAILRSAAAFGAACIVTQDRHAPPEGGVLAKSASGALETVPWVRVVNLARALDEL 185

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G+  IGL+ +++  L   +    +AL+LGAEG+G+R    +   ++A L +   I++
Sbjct: 186 ADLGYWRIGLAGEAEATLSGSLTTGALALVLGAEGEGMRHNIAQHCDTLAKLPITSAIES 245

Query: 263 LNVSN 267
           LNVSN
Sbjct: 246 LNVSN 250


>gi|330951485|gb|EGH51745.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae Cit 7]
          Length = 234

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 12/226 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS
Sbjct: 185 YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVGLPMAGSVSSLNVS 230


>gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07]
 gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07]
          Length = 248

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108
           + G + V  A+ +       L+A       +     +       ++ V    +D++    
Sbjct: 7   IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 66

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    +      LD +             ++LD + DPHN+G+I+R+A A    G
Sbjct: 67  S-HQGVIAYASEHKYYELDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   + V+AK+++GA+E++P  +++N+ + ++++   G        D +    
Sbjct: 126 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGET-FY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++     + +++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 185 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 243


>gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured
           Desulfobacterium sp.]
          Length = 270

 Score =  240 bits (614), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 134/264 (50%), Gaps = 17/264 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWD 84
           R++K +    +KSR     ++  LYG+H V  A+    RK++++   K     L R    
Sbjct: 3   RNFKSL----EKSR-LEMDKSEILYGIHPVFEAVRAGRRKVYEIYIAKQKDSTLLRNISK 57

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL 138
              P   P+ +V P  + KI G +   Q +A + +       + +      +N   L++L
Sbjct: 58  LAEPAKIPLISVKPDHLTKITGSD-FQQNIAAKVSEYPLIAFEDILNSITQKNYDFLLLL 116

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+GA+ R+A+     GI+ TK  S S +  ++K+++GALEHI   +++N+  +
Sbjct: 117 DTVVDPQNLGALARTALCAGVSGIVITKDRSASPTPAVSKASAGALEHIFLSKVTNMVSS 176

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +++M   G   +G+ + +  P+        IAL++G+EGKG+R   +     +  +   G
Sbjct: 177 IKEMKDRGIWVVGMDAMADMPVFSCDLKGPIALVIGSEGKGIRQLVKANCDFLVSIPQKG 236

Query: 259 IIKALNVSNAAAVALYI--TQNHF 280
            + +LN S A AVA+Y    Q +F
Sbjct: 237 EVSSLNASAAGAVAMYEVFRQRNF 260


>gi|159029966|emb|CAO90345.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 288

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 15/284 (5%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           S++ F  K  +    R +      + + +      +Q  +  LYG   V  A+    R++
Sbjct: 2   SDRPFRDKSDNRNSRRPSRPKTGPILAKSPAVTPENQEADDLLYGRRVVLTAME-EERQL 60

Query: 69  FQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
            ++    N L          +    +   +  V    +D+I  K A HQG+A + +P   
Sbjct: 61  NRIWVV-NRLRYDPRYHTLLEKAKANGTVIDEVDDLRLDQITNK-ANHQGIAAQMSPYDY 118

Query: 124 PTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             L  +           ++++ + + DPHN+GAI+R+A A  C G++  +R +   ++ +
Sbjct: 119 IELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTV 178

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            K A+GALE++P  R+ NL  AL+++ + GF   G ++ + K L        I L++G+E
Sbjct: 179 MKVAAGALEYLPVARVVNLNRALEELKAAGFWLYGTAAKTGKSLHTINLTGAIGLVVGSE 238

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+GL   TQ++   +  + + G   +LN S AAA+ALY      
Sbjct: 239 GEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQR 282


>gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 263

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 93/232 (40%), Positives = 143/232 (61%), Gaps = 5/232 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +    +   ++ L+G H V AAL NP R+  +L AT+  +A LD +  LP  FPV+    
Sbjct: 21  RGSGRASAGHVRLWGRHAVEAALKNPDRQHRKLWATREGVASLDGE--LPPDFPVEYADV 78

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAV 155
           Q + ++V K+A HQGL LE A L    LD V +   ++ ++VLD V DPHN+GAI+RSAV
Sbjct: 79  QDLARLVAKDAPHQGLVLECAALEDRFLDEVLDGDPARPIIVLDQVTDPHNVGAIMRSAV 138

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF+   ++T  R++P E  V+ KSASGALE +P+IR+ NL  A+++M   G+  IGL+  
Sbjct: 139 AFNAAALVTQDRHAPPEGGVIGKSASGALETLPWIRVVNLARAMEEMAEAGYWRIGLTGH 198

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +     + +    +A++LGAEG+G+R   +    ++A L +   I++LNVSN
Sbjct: 199 TDTTFAEALPAGPVAIVLGAEGEGMRQNIETHCDALAKLPISNEIESLNVSN 250


>gi|134282338|ref|ZP_01769043.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 305]
 gi|134246376|gb|EBA46465.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 305]
          Length = 260

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 19  VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 78

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 79  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   + 
Sbjct: 138 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 197

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY       
Sbjct: 198 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 257


>gi|256844498|ref|ZP_05549984.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|293381069|ref|ZP_06627090.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus 214-1]
 gi|312977948|ref|ZP_07789694.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus CTV-05]
 gi|256613576|gb|EEU18779.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|290922369|gb|EFD99350.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus 214-1]
 gi|310895255|gb|EFQ44323.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus CTV-05]
          Length = 251

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALN-NPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L    + KI ++      +   A   +         V+ VP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L  +      L       DA      L++LD + DPHN+G+ILRSA A 
Sbjct: 66  VA-GGNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +     K  L++G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 TDYREWNAQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLYQAY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|326802929|ref|YP_004320747.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650933|gb|AEA01116.1| RNA methyltransferase, TrmH family, group 3 [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 253

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 120/247 (48%), Gaps = 13/247 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTV 96
           S  + +     + G H V AAL++ S+KI+Q    +   ++              P+   
Sbjct: 2   SPKSKKGARDLVLGYHAVQAALDS-SQKIYQAYLQEGQHSKRHQAVEKGLQDRQIPISYR 60

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGA 149
             + +D++  + A HQG  LE A     ++D        +      ++LD + DPHN+G+
Sbjct: 61  SKRDLDQLT-QGANHQGFVLEVAAYQYYSVDDLFQRAKELGEDPFFILLDGIMDPHNLGS 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A A    GII  K  +   +  +AK ++GA+E++P  R++N+T  ++ +   G   
Sbjct: 120 ILRTADACGAHGIIIPKHRAAGVTPTVAKISTGAIEYLPVARVTNMTQTIEALKEKGVWV 179

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G   +  +       +  IA+++G E KG+ P+ ++    +  + M G +++LN S AA
Sbjct: 180 FGTDMEG-QDYWDMDASLPIAVVIGNEEKGISPRVKKALDGVLTIPMRGHVQSLNASVAA 238

Query: 270 AVALYIT 276
           A+ +Y  
Sbjct: 239 ALVMYEV 245


>gi|241761486|ref|ZP_04759574.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241374393|gb|EER63890.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 249

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 9/234 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +SR+ + P +   +G H V AALNNP R I ++ AT+ ALA  + D       PV     
Sbjct: 3   RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLSDV 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRS 153
             + + V  +A HQG+ +E  PL    L  +      + + L+VLD V DPHN+GAILRS
Sbjct: 59  ADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   GIIT  R++P ES  LA++ASGALE +P++R++NL  AL ++   G+  IGL+
Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             S+  L Q + + K AL+LGAEG+GLR  T+     +A L +   I++LNVSN
Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|56551128|ref|YP_161967.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|56542702|gb|AAV88856.1| RNA methyltransferase, TrmH family, group 3 [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 249

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/234 (41%), Positives = 140/234 (59%), Gaps = 9/234 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +SR+ + P +   +G H V AALNNP R I ++ AT+ ALA  + D       PV     
Sbjct: 3   RSRNKASPSHPRFWGRHAVEAALNNPERHIRRIWATREALAPYNID----KSIPVTLSDV 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRS 153
             + + V  +A HQG+ +E  PL    L  +      + + L+VLD V DPHN+GAILRS
Sbjct: 59  ADLGRFVPNDAPHQGIVIEVDPLPDIWLADLLDLPETDKRPLLVLDQVTDPHNVGAILRS 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   GIIT  R++P ES  LA++ASGALE +P++R++NL  AL ++   G+  IGL+
Sbjct: 119 AAAFDALGIITQDRHAPPESGALARAASGALEVVPWVRVTNLARALDEIAEAGYWRIGLT 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             S+  L Q + + K AL+LGAEG+GLR  T+     +A L +   I++LNVSN
Sbjct: 179 GHSEATLSQTLGSGKTALVLGAEGEGLRQNTEAHCDELAKLPISSKIESLNVSN 232


>gi|190571500|ref|YP_001975858.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|213018903|ref|ZP_03334711.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|190357772|emb|CAQ55226.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|212995854|gb|EEB56494.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 255

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 135/243 (55%), Gaps = 9/243 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVP 97
           + +   EN ++YG HT  +AL N +R+  +LL T+N     + +            + V 
Sbjct: 2   KSSKANENCWIYGKHTCISALRNKNRRCIELLVTENFYREFEKEIKQCADSKGIKPRLVE 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            +  + ++ K   HQG+AL+ AP+     +    +   +S  +++LD + D HNIG+ILR
Sbjct: 62  NKMFNDVLPKGVNHQGIALKVAPIFHSLNIEEIAEGSGDSSTIVILDQITDTHNIGSILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           ++  F+ D ++    +SPSE+A +AK+ASGAL+ +P I ++N+   ++ +   G+   G 
Sbjct: 122 TSACFNIDALVLPHHHSPSENASIAKAASGALDIVPLIYVTNIVKTMESLKKIGYWCYGF 181

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             ++K+ +++      K  +I G+E KG+R   +E+   +  + M  +I +LNVSNAAA+
Sbjct: 182 DCNAKENIDEIKNFGQKRVIIFGSEEKGMRRLVKESCDYLLKIPMSNVIDSLNVSNAAAI 241

Query: 272 ALY 274
            LY
Sbjct: 242 GLY 244


>gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
           sp. WH 8109]
 gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
           sp. WH 8109]
          Length = 515

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 85/307 (27%), Positives = 143/307 (46%), Gaps = 36/307 (11%)

Query: 5   SKKKSEK----IFSLKDSHYAKLRRNHRDYKKMQSFNQKSR-HTSQPENL---------- 49
           S  ++E+     F  ++  +   RR+  D ++  S   +SR   ++P+            
Sbjct: 124 SGSQNERSGPGRFRDRNDRFGDRRRS-GDERRQPSQRPRSRFDEARPQRPDAAPEAAAAT 182

Query: 50  -----FLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQ 99
                 ++G H   AAL    R I ++  T          +L  DA       V+ V   
Sbjct: 183 PPADDLIWGRHATQAALE-AGRPIHRIWCTAEMRSASKFLQLLRDAK-ASGVLVEEVTWA 240

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILR 152
            + +I G  +VHQG+AL+TA   +  LD        +    LL+ LD V DPHN+GA++R
Sbjct: 241 RLGQITG-GSVHQGIALQTAAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVR 299

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A    G++  +R S   +   AK A+GALEH+P  R+ NL  +L+K+   G++ +GL
Sbjct: 300 SAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGL 359

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +++    L     +  + L+ G+E +GL   T+     +  + + GI  +LN S A A+ 
Sbjct: 360 AAEGDVTLTDVDLSGPMVLVTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALC 419

Query: 273 LYITQNH 279
           +Y     
Sbjct: 420 VYEVARR 426


>gi|225873641|ref|YP_002755100.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
           capsulatum ATCC 51196]
          Length = 270

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 107/245 (43%), Gaps = 14/245 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-------LDWDANLPHPFPVKTVPPQTI 101
             LYG+H V  AL   SRK   +  ++               D        ++    + +
Sbjct: 2   DVLYGLHPVEEALRAGSRKFDHVCVSRERQDHGAAQKLQRIVDLCRSEGVRLRFENREQL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155
            ++    A HQG+          T++ +       +  LL+ LD V DP N+GA+LRSA 
Sbjct: 62  TRMAKTHA-HQGVVAVVRERSFLTIEDLMAAPADGHPHLLLALDGVEDPQNLGALLRSAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               DG++  +R S   SAV  K+++GA EHI   R+ NL  AL+++       +GL   
Sbjct: 121 GAGVDGVLLPERRSAPLSAVAVKTSAGAAEHIRIARVVNLVRALEQLKEQNIWCVGLDER 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +         ++LG EG+GL    ++T   +  + M G + +LNVS A AV LY 
Sbjct: 181 GTMSYDAYDWTTPSVVVLGREGEGLHDLVRKTCDHLVRIPMAGGVSSLNVSAAGAVVLYE 240

Query: 276 TQNHF 280
                
Sbjct: 241 AARQR 245


>gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus
           oleovorans Hxd3]
          Length = 256

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 12/243 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDANLPHPFPVKTVPPQTIDKIVG 106
           LYG+H V AA+    RK+  L        R        A   H  PV  +P + ++++ G
Sbjct: 10  LYGIHPVMAAITAGRRKVDTLFIASGRETRQPHQQALQAAEQHNIPVNEIPARDLEQMTG 69

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              VHQG+A   +      L  +       ++  ++V D + DPHN+GA+ R+A+     
Sbjct: 70  -GKVHQGIAARVSVYPFVPLADLLAAVPSTDTPFILVADGLTDPHNLGALARTALCAGVH 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  + S +    K+++GALE +P  R +N+   L  +   G    GL    ++ +
Sbjct: 129 GLIIPKDNAASPTPAAVKASAGALEFLPVARETNIARVLDALKDAGLWIAGLDGRGEQTI 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279
                   +AL++G EG+G+R    +    +  +    ++ +LN S A AVA+Y   +  
Sbjct: 189 YDSDLTGPLALVVGDEGRGIRRLVGQKCDFILSIPQTDMVHSLNASVAGAVAMYEAFRQR 248

Query: 280 FAK 282
            AK
Sbjct: 249 RAK 251


>gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH
           391-98]
          Length = 254

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+K+          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVKNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAD--IVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  +      +  VP + I K++ +    QG+              +
Sbjct: 49  ELIVSDQTDLPKDWIVS---DVEMYIVP-EPIVKVLRETETTQGVFAVCEKQEKEV--EL 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N + L+ LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 103 SNGKFLL-LDGLQDPGNLGTIIRTADAAGVHAVVLGEGCVDAYNSKVLRSTQGSIFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+ +      G + ++  P  +       ALI+G EG G+         
Sbjct: 162 VK-GNLEEWIDKLKTHNVPVYGTALENGVPYGEITPTGSFALIVGNEGNGVHQDILAKCD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|254464985|ref|ZP_05078396.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium Y4I]
 gi|206685893|gb|EDZ46375.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium Y4I]
          Length = 258

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 147/246 (59%), Gaps = 7/246 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+  +  E ++L+G+H V  AL NP R+  +L+ T+NA  +L  DA        + +
Sbjct: 11  KEQSKRAAAAETVWLFGLHAVRDALLNPKREKLRLMVTQNAQVKLA-DAIAESGIEAEVI 69

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRS 153
            P+  +  +  ++VHQG ALE  PL    L      R +  +++LD V DPHN+GAILRS
Sbjct: 70  DPRKFNPPIDAQSVHQGAALEVKPLNWGGLAENCIGREAPRVLLLDRVTDPHNVGAILRS 129

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL D + ++ + GF  +GL 
Sbjct: 130 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADTITELQNMGFIVLGLD 189

Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++++ +E  ++      +AL+LGAEG GLR KT+ET  ++  +   G   +LNVSNAAA
Sbjct: 190 GEAEQTIETALEGKQHLPVALVLGAEGPGLRQKTKETVDALVKIGAAGGFGSLNVSNAAA 249

Query: 271 VALYIT 276
           +ALY +
Sbjct: 250 IALYAS 255


>gi|326693586|ref|ZP_08230591.1| tRNA/rRNA methyltransferase [Leuconostoc argentinum KCTC 3773]
          Length = 253

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 13/246 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKT 95
           K    +  +  F+YG +   AAL   +++I ++        ++  +           ++ 
Sbjct: 2   KREQETPNQTEFVYGHYASVAALK-GTQEINKVWLQTGLQDKIRNEVTQLAKKRGLVIQQ 60

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
            P   +D++      HQG+ L  A     T+D +       + +   ++LD + DPHN+G
Sbjct: 61  APKSKLDELTD-GGNHQGVVLSVAAFTYATIDDLFARAEERQEAPFFLILDGIEDPHNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A A    GII  KR +   +A +AK ++GA+E++P  R++NL + + ++   G  
Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEYVPVARVTNLVNTVNELKDRGVW 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G    + +   +       AL++G EGKG+ P  ++    M  + M G +++LN S A
Sbjct: 180 IFGTDM-AGEDYRRWDAKGATALVIGNEGKGISPLLKKKVDGMLTIPMVGHVQSLNASVA 238

Query: 269 AAVALY 274
           A++ +Y
Sbjct: 239 ASLLIY 244


>gi|210608927|ref|ZP_03288064.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
 gi|210152844|gb|EEA83850.1| hypothetical protein CLONEX_00244 [Clostridium nexile DSM 1787]
          Length = 250

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           ENL + G + V  A  +  P  K+F L   ++   R        H   +  V  + +D+I
Sbjct: 8   ENLMVEGRNAVIEAFRSGKPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVTKERLDQI 67

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      ++ +            L++LD++ DPHN+GAI+R+A   
Sbjct: 68  -SETKKHQGVIAYAAAYEYSEVEDMLELAKKKGEDPFLILLDNIEDPHNLGAIIRTANLA 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +      +
Sbjct: 127 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLWFVCADMGGE 186

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + +      I +++G EG G+    +E    +A + M G I +LN S AA V  Y   
Sbjct: 187 -SMYRLNLTGPIGMVIGNEGDGVSRLVKEKCDFIASIPMKGDIDSLNASVAAGVLAYEIV 245

Query: 278 NHFAK 282
               +
Sbjct: 246 RQRLQ 250


>gi|332706005|ref|ZP_08426078.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
 gi|332355265|gb|EGJ34732.1| putative rRNA methylase, group 3 [Lyngbya majuscula 3L]
          Length = 347

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 143/296 (48%), Gaps = 28/296 (9%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ----KSR--HTSQPENLFLYGVHTVSA 59
            +K+ K    K+ H  K R  H  + +     Q    KS+   +++ E+  +YG H+V A
Sbjct: 41  SQKNGKPPR-KNYHSRKPRAKHSHHSEETQPKQHGYPKSKLVSSTEEESDLIYGRHSVIA 99

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPPQTIDKIVGKEAVH 111
           AL N   ++ ++      +++L +D            +   +  V P+ + +I  K   H
Sbjct: 100 ALQN-QHQLNRVWI----ISQLRYDPRFHSLLVQAKANGTVIDEVAPKRLSQIT-KGGNH 153

Query: 112 QGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           QG+A + A      L+ +           +L+  D +NDP N+GAI+R+A A    G++ 
Sbjct: 154 QGVAAQIASYNYIDLNDLIDKAKWATEQPVLLACDGINDPQNLGAIIRTAEALGAQGLVI 213

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +R +   ++ + K A+GALE  P  R+ NL++AL+++ + GF   G ++ + K L +  
Sbjct: 214 PQRRAVGVTSTVRKVAAGALETFPIARVVNLSNALEQLKTAGFWIYGTAAGTGKLLHKVD 273

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + L++G+EG GL  ++Q     +  + + G   +LN S A A+ LY T    
Sbjct: 274 LTGSVVLVIGSEGNGLSLRSQSCCDMLISIPLQGKTPSLNASAATAMVLYETYRQR 329


>gi|328462975|gb|EGF34783.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus MTCC
           5463]
          Length = 250

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L    + KI ++      +   A   +         ++ VP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L  +      L       D       L++LD + DPHN+G+ILRSA A 
Sbjct: 66  VD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLILDSIEDPHNLGSILRSADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +     K  L++G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 TDYREWNAKGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
           QCD-23m63]
          Length = 245

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKE 108
           + G + V  A+ +       L+A       +     +       ++ V    +D++    
Sbjct: 4   IEGRNPVIEAIKSDREIDKILIANSAKEGSIKKIIGMAKDKNIIIQYVDKHKLDEVSTSH 63

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + HQG+    +      LD +             ++LD + DPHN+G+I+R+A A    G
Sbjct: 64  S-HQGVIAYASEHKYYELDELIDLVKNKDEDPFFIILDEITDPHNLGSIIRTADAVGAHG 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR S   + V+AK+++GA+E++P  +++N+ + ++++   G        D +    
Sbjct: 123 VIIPKRRSVHITPVVAKASAGAVEYMPVCKVTNIVNTIKRLKEEGLWIAAADMDGET-FY 181

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++     + +++G+EG G+    ++    +  + M G + +LN S A  + LY      
Sbjct: 182 KQNLTGPLGVVIGSEGFGISRLVKQNCDFIVKMPMIGNVTSLNASVAGGILLYEIFRQR 240


>gi|169830404|ref|YP_001716386.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637248|gb|ACA58754.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 251

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 7/243 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQ 99
               +   +YG + V  AL    R + ++L  + A  RL     +   P   PV+ V   
Sbjct: 5   RDSEKQTVIYGRNPVREALR-GGRTLHKILVVRGADPRLFRELRELARPGRIPVQVVERP 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +D++    A HQG+A   +     T++ +    + L++VL+ + DP N+GAILR+A A 
Sbjct: 64  LLDRLTDGGA-HQGVAATVSVKDFATVEELLGTENPLIVVLNAIQDPRNLGAILRTAEAA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG +   R +   +   AK+A+GA+E++P  R++N+   L++    G   +G   D  
Sbjct: 123 GVDGAVVPSRRAAPLTPAAAKTAAGAVEYLPVARVTNIALTLREFKQKGLWVVGADPDGP 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      +AL++G E  GL    +    S+  + M G + +LN S AAA+ +Y   
Sbjct: 183 VSYWDADLGGPLALVIGGEAGGLGRAVRAECDSLVRIPMSGRVGSLNASVAAALLIYEAV 242

Query: 278 NHF 280
              
Sbjct: 243 RQR 245


>gi|331085693|ref|ZP_08334776.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330406616|gb|EGG86121.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 251

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 108/240 (45%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +  P  K+F L   ++   R        H   +  V  + +D++  + 
Sbjct: 14  IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTILNFVSKERLDQL-SET 72

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A      ++ +             ++LD++ DPHN+GAI+R+A      G
Sbjct: 73  GKHQGVIAHAAAYEYSEIEDMFALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHG 132

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +      +  + 
Sbjct: 133 VIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKERGLWFVCADMGGE-SMY 191

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      I L++G EG+G+    +E    +A + M G I +LN S AA V  Y       
Sbjct: 192 RMNLTGPIGLVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRG 251


>gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
          Length = 480

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/281 (27%), Positives = 128/281 (45%), Gaps = 23/281 (8%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENL----------FLYGVHTVSAALNNPSRKIF 69
             +  R     ++      + R   +PE             ++G H+  AAL    R I 
Sbjct: 137 DRRGDRRPSFQRERSRLPFRDRTPRKPEGEAAAATPPADDLVWGRHSALAALE-AGRPIH 195

Query: 70  QLLATKNALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           ++  T    +   +   L         V+ V    + +I G  +VHQG+AL+TA   +  
Sbjct: 196 RIWCTPEMRSAAKFLQLLRDAKASGVLVEEVTWARLGQITG-GSVHQGIALQTAAAETID 254

Query: 126 LD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           L+        +    LL+ LD V DPHN+GA++RSA A    G++  +R S   +   AK
Sbjct: 255 LESLIEGCSDLGEPPLLLALDGVTDPHNLGAVVRSAEAMGAHGVVLPQRRSAGLTGSAAK 314

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A+GALEH+P  R+ NL  +L+K+   G++ IGL+ +    L     +  + L+ G+E +
Sbjct: 315 VAAGALEHLPVARVVNLNRSLEKLKDAGYRVIGLAGEGDVTLPDVDLSGPLVLVTGSEDQ 374

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           GL   T+     +  + + G+  +LN S A A+ +Y     
Sbjct: 375 GLSLLTRRHCDQLVRIPLRGVTPSLNASVATALCVYEVARR 415


>gi|76810371|ref|YP_333368.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|217423817|ref|ZP_03455318.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 576]
 gi|238563304|ref|ZP_00439092.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           GB8 horse 4]
 gi|242316025|ref|ZP_04815041.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106b]
 gi|251767767|ref|ZP_02268341.2| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           PRL-20]
 gi|254197285|ref|ZP_04903707.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei S13]
 gi|76579824|gb|ABA49299.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710b]
 gi|169654026|gb|EDS86719.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei S13]
 gi|217393675|gb|EEC33696.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 576]
 gi|238520972|gb|EEP84427.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           GB8 horse 4]
 gi|242139264|gb|EES25666.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106b]
 gi|243061768|gb|EES43954.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           PRL-20]
          Length = 260

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 19  VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 78

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 79  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   + 
Sbjct: 138 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 197

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY       
Sbjct: 198 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 257


>gi|254486509|ref|ZP_05099714.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           GAI101]
 gi|214043378|gb|EEB84016.1| RNA methyltransferase, TrmH family, group 3 [Roseobacter sp.
           GAI101]
          Length = 264

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/249 (36%), Positives = 146/249 (58%), Gaps = 7/249 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++ +     + ++L+G+H V  AL NP+R+  +L+ T NA  +L+         P + V
Sbjct: 16  KEQEKKVEANQTVWLFGLHAVRDALENPAREKLRLMVTPNAQIKLEAAIAQAGITP-EVV 74

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRS 153
            P+     + + +VHQG  LE  PL   +L  V     +  +++LD V DPHN+GAILRS
Sbjct: 75  DPRKFRPPLDQGSVHQGAVLEVKPLSWGSLAEVCIGAEAPRVLLLDRVTDPHNVGAILRS 134

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I  + ++  E+  LAKSASGALE  PY+R+ NL D+++++ + G+  +GL 
Sbjct: 135 AEVLGASAVIGMRHHAAPETGSLAKSASGALERQPYLRVRNLADSIKELQNMGYLVLGLD 194

Query: 214 SDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +++  +E  +   ++  +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 195 GEAEITVEAALEGKRDRPVALVLGAEGPGLREKTKETVDVLVRIDAEGGFGSLNVSNAAA 254

Query: 271 VALYITQNH 279
           +ALY ++ H
Sbjct: 255 IALYASRPH 263


>gi|161506928|ref|YP_001576882.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
           4571]
 gi|160347917|gb|ABX26591.1| putative tRNA/rRNA methyltransferase [Lactobacillus helveticus DPC
           4571]
          Length = 250

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L    + KI ++      +   A   +         ++ VP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L  +      L       D       L++LD + DPHN+G+ILRSA A 
Sbjct: 66  VD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +     K  L++G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 TDYREWNAKGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
           ATCC 43734]
          Length = 318

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 21/284 (7%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKS-----RHTSQPENL-FLYGVHTVSAALNN--PSRKIF 69
           +  A+ R  H  YK+ Q+  +++     R       +  + G + V   L+   P+  ++
Sbjct: 37  TPKAEDRVYHAAYKRKQAAKRRASGAHDRFAKDDNQVELVVGRNPVIECLHAKVPATALY 96

Query: 70  QLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
               TKN   RL    +        V  V    +D++ G   +HQG+ L+  P     ++
Sbjct: 97  VAEGTKN-DERLAEAVHTCADRGISVLEVSRAELDRMTG-NGMHQGIGLQIPPYQYTQVE 154

Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +           L++ LD++ DP N+GA++RS  AF   G+I  +R S S +AV  +++
Sbjct: 155 DLIQQAASAPQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTS 214

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +G    +P  + +N+  +L+++   G+Q +GL +     L+         +++G+EGKGL
Sbjct: 215 AGTAARLPVAKATNMVRSLKQLQQAGYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGL 274

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
                ET  ++  + M   +++LN S AA V L  +  Q   AK
Sbjct: 275 SRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318


>gi|289209098|ref|YP_003461164.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           K90mix]
 gi|288944729|gb|ADC72428.1| RNA methyltransferase, TrmH family, group 3 [Thioalkalivibrio sp.
           K90mix]
          Length = 251

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 11/237 (4%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           G+H V+A L +   ++  L         ALA+L   A       V+      +D+     
Sbjct: 15  GIHAVAAVLQHAPERVRLLQLASGTLEPALAQLLEQAQ-ARGISVERAGRDKLDQH-HPG 72

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             HQG+ +  AP       A+         L++VLD V DPHN+GA LR+A A     I+
Sbjct: 73  FQHQGVIVHCAPRPVVEEKALVQRVRNGLDLVLVLDGVTDPHNLGACLRTADAAGAGAIV 132

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
           T + +S + +    K ASGA E +P + + NL   L  +   G  T+GL   + + L   
Sbjct: 133 TPRHHSAALTPAAIKVASGAAETVPVVAVGNLARTLAALKDAGMWTVGLDGAAHEDLYAV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 A+++GAEG+G+R  T+E    +A + M G +++LNVS A  + L+  +   
Sbjct: 193 DLRPPTAIVMGAEGEGMRRLTREACDHLARIPMGGTVESLNVSVATGITLFEARRQR 249


>gi|237812095|ref|YP_002896546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei MSHR346]
 gi|237503283|gb|ACQ95601.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei MSHR346]
          Length = 247

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   + 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY       
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGRVESLNVSVASGVCLYEAVRQRG 244


>gi|153855859|ref|ZP_01996834.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
 gi|149751827|gb|EDM61758.1| hypothetical protein DORLON_02856 [Dorea longicatena DSM 13814]
          Length = 265

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 112/258 (43%), Gaps = 11/258 (4%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPF 91
           +  + K  +  +     + G + V  A  +  P  K++ L   ++   R        H  
Sbjct: 10  KKMHDKKSYDKKENENIIEGRNAVMEAFRSGKPVDKLYVLDGCQDGAVRSIIREARKHDT 69

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            +  V    ++++  +   HQG+    A      ++ +            L++LD++ DP
Sbjct: 70  ILNFVEKDRLNQL-SETGKHQGVIASVAAYEYAEVEDMLKLAEEKGEDPFLIILDNIEDP 128

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAI+R+A      G+I  KR +   +A +A++++GAL + P  +++NL   ++ +  
Sbjct: 129 HNLGAIIRTANQAGAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVTNLVKTMEDLKK 188

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   +    D    +        I L++G EG+G+    ++T    A + M G I +LN
Sbjct: 189 KGLWFVCADMDGDV-MYDVNMKGPIGLVIGNEGEGVGRLVKDTCDFTARIPMKGDIDSLN 247

Query: 265 VSNAAAVALYITQNHFAK 282
            S AA V  Y       +
Sbjct: 248 ASVAAGVLAYEIVRQRMQ 265


>gi|312869725|ref|ZP_07729872.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
           PB013-T2-3]
 gi|311094774|gb|EFQ53071.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus oris
           PB013-T2-3]
          Length = 248

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 15/244 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTI 101
               F+ G H    AL      I ++        +A+A +   A       V TVP   +
Sbjct: 4   ENTDFIIGRHPAVMALKADQE-INKVFVQAGLKADAIAEIIKLAKQKRLV-VSTVPKTKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D++      HQG+AL  A      LD +             ++LD + DPHN+G+I+R+A
Sbjct: 62  DQLTD-HQNHQGVALAVAAYQYADLDDLFANAAQKHEDPFFLILDELEDPHNLGSIIRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  +R +   ++V+AK+++GALEH+P  R++NL    +++   G    G   
Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLVQTAKELKDRGVWLFGTDM 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +        +  +AL++G EGKG+ P  +++   M  + M G +++LN S AA++ +Y
Sbjct: 181 KGR-DYRTWDAHGAVALVIGNEGKGISPLLKKSCDEMLTIPMIGHVQSLNASVAASLLIY 239

Query: 275 ITQN 278
              N
Sbjct: 240 QGFN 243


>gi|166365581|ref|YP_001657854.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166087954|dbj|BAG02662.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 288

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 134/284 (47%), Gaps = 15/284 (5%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           S++ F  K  +    R +      + + +      +Q  +  LYG   V  A+    R++
Sbjct: 2   SDRPFRGKSDNSNFRRPSRPKTGPILAKSPAVTPENQEADDLLYGRRVVLTAME-EERQL 60

Query: 69  FQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
            ++    N L          +    +   +  V    +D+I  K A HQG+A + +P   
Sbjct: 61  NRIWVV-NRLRYDPRYHTLLEKAKANGTVIDEVDDLRLDQITSK-ANHQGIAAQMSPYEY 118

Query: 124 PTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             L  +           ++++ + + DPHN+GAI+R+A A  C G++  +R +   ++ +
Sbjct: 119 IELADLIEKAKGKSRHPVIVIAEGITDPHNLGAIIRTAEAMGCQGVVIPQRRAAGVTSTV 178

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            K A+GALE++P  R+ NL  AL+++ + GF   G ++ S K L        I L+LG+E
Sbjct: 179 MKVAAGALEYLPVARVVNLNRALEELKAAGFWLYGAAAKSGKSLHTINLTGAIGLVLGSE 238

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+GL   TQ++   +  + + G   +LN S AAA+ALY      
Sbjct: 239 GEGLSLLTQKSCDELVSIPLAGKTPSLNASVAAAMALYEVYRQR 282


>gi|256848162|ref|ZP_05553606.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715222|gb|EEU30199.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 249

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 15/237 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F+ G H   AAL +    I ++   K    +A+A++   A   H   +  VP   +D++
Sbjct: 7   EFVIGRHPAVAALKSDQE-INKVFIQKGLRTDAIAQIIKLAKERHLV-ISNVPKTKLDQM 64

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQG+AL  A     T+D +            L++LD + DPHN+G+I+R+A A 
Sbjct: 65  VD-HQNHQGVALAVAAYHYATIDDLFANAQAHDEEPFLLILDELADPHNLGSIMRTADAA 123

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   ++V+AK+++GA+E +P  R++NL    +++ + G    G      
Sbjct: 124 GVHGIIIPKRRAVGLTSVVAKTSAGAIERVPVARVTNLVQTAKELKARGVWLFGTDMQG- 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +      +A+++G EGKG+ P  ++T   M  + M G +++LN S AA++ +Y
Sbjct: 183 TDYRRWDAQGAVAVVIGNEGKGISPLLKKTCDEMLTIPMVGQVQSLNASVAASLLIY 239


>gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 316

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 139/294 (47%), Gaps = 28/294 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++  K  H AKL R  R+           RH  +   + + G + V   L
Sbjct: 35  KGPTPKAEDRVYHAK--HKAKLERERRN---------SGRHQKETAEMVV-GRNPVIECL 82

Query: 62  NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +   P+  ++    T+N   RL    ++      P+  V    +D++ G   +HQG+ L+
Sbjct: 83  HAKVPATTLYIAAGTRN-DKRLSEAVSMCNTRNIPIIEVQRHEMDRMTG-NGMHQGIGLQ 140

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     ++ +           + ++LD++ DP N+GA++RS  AF  DG+I  +R S 
Sbjct: 141 IPPYKYAAVEDLIANAAENPRPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKI 229
           S +AV  ++++G    +P  R +N+T  +++    G+Q +GL +     L+  E   D +
Sbjct: 201 SVTAVAWRTSAGTAARLPVARATNITRTVKEFQKNGYQVVGLDAGGDHTLDTYEGGTDPV 260

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
            +++G+EGKG+     ET   +  + M G +++LN S AA   L  +  Q   A
Sbjct: 261 VIVIGSEGKGISRLVSETCDVLMSIPMTGWVESLNASVAAGSVLSEFARQRRAA 314


>gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 304

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 90/222 (40%), Positives = 132/222 (59%), Gaps = 5/222 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L+G H V AAL NP+R   +L  T+ A+  +  D +A LP   PV+      + ++V ++
Sbjct: 49  LWGRHAVEAALTNPARTAKKLWGTREAIQAMLDDHEAELPSSLPVEYAQAADLARLVARD 108

Query: 109 AVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           A HQGL L+ +PL    LD V      + L++LD V DPHN+GAILR+  AF    +IT 
Sbjct: 109 APHQGLVLDCSPLEDIALDEVLDEAEGRTLVILDQVTDPHNVGAILRTCAAFDVAAMITQ 168

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R++P ES  LAK+ASGALE +P++R+ NL+ AL+ +   G+  I L  + K      + 
Sbjct: 169 DRHAPPESGTLAKAASGALEVVPWVRVVNLSRALESIAEAGYWRIALDGEGKAEFPSALP 228

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              +AL+LGAEG+GLR    +   S+A L +   I++LNVSN
Sbjct: 229 TGPVALVLGAEGEGLRHNVLQHCDSVARLPISRAIESLNVSN 270


>gi|257093550|ref|YP_003167191.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046074|gb|ACV35262.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 250

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 108/240 (45%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            ++G H+  A L +    + ++    +   ARL           V+   V P  ++ +  
Sbjct: 7   LIFGFHSTLAKLRHDPGAVREIYVDASRHDARLRDLVAHAEFAAVRVMPVDPARLEALA- 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A HQG+            L   LD +     L+VLD + DPHN+GA LR A A     
Sbjct: 66  PGARHQGVIATVGATQRHVTLDDVLDTLDEPPFLLVLDGIQDPHNLGACLRVADAVGAHA 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +    K ASGA E +PYI ++NL  AL++M       IG  + +K  L 
Sbjct: 126 VIAPKDRAVGLTQTAVKVASGAAETVPYITVTNLARALREMKERDIWVIGTDALAKDDLY 185

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +   A +LGAEG GLR  T+ET   +  + M G + +LNVS A  V LY  +    
Sbjct: 186 AAQWSTATAWVLGAEGDGLRRLTRETCDQLVSIPMLGSVASLNVSVATGVCLYEARRRRN 245


>gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
 gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
          Length = 254

 Score =  239 bits (612), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSIQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+            +  
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|160947201|ref|ZP_02094368.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
 gi|158446335|gb|EDP23330.1| hypothetical protein PEPMIC_01134 [Parvimonas micra ATCC 33270]
          Length = 254

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 113/243 (46%), Gaps = 12/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + +++G + V  AL +  RK+ ++   K  L             +   +  +    ++ +
Sbjct: 11  SDYIFGRNAVLEALESD-RKVEKIYILKGDLKGSINKIIGKAKANGILISEIDKHKLENM 69

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAF 157
             +  VHQG+    +     T++ +  S         L++LD + DPHN GAI+R+  A 
Sbjct: 70  A-EGVVHQGVCALISSFEYSTVEEILQSAKDKNEDLFLVILDEIEDPHNFGAIIRTCEAV 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII +KR     ++++ KS++GA+ HI   +++N+ D + K+        G   +++
Sbjct: 129 GVHGIIVSKRNQAPVTSIVQKSSAGAVNHIKIAKVANIADTILKLQKENVWVYGACGEAE 188

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K          IA+++G EGKG+    ++    +  L M G + +LN SNA A+ +Y   
Sbjct: 189 KIYTDMDFKGNIAIVIGNEGKGIGQLIRKRCDFLTKLPMKGKVSSLNASNACAILVYEAL 248

Query: 278 NHF 280
              
Sbjct: 249 RQR 251


>gi|53719486|ref|YP_108472.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|53723479|ref|YP_102933.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|121601104|ref|YP_993068.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124385837|ref|YP_001026152.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126440617|ref|YP_001058836.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126449600|ref|YP_001080577.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|126453075|ref|YP_001066084.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|167719760|ref|ZP_02402996.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei DM98]
 gi|167738755|ref|ZP_02411529.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 14]
 gi|167815979|ref|ZP_02447659.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 91]
 gi|167824352|ref|ZP_02455823.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 9]
 gi|167845895|ref|ZP_02471403.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei B7210]
 gi|167894463|ref|ZP_02481865.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 7894]
 gi|167902867|ref|ZP_02490072.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei NCTC 13177]
 gi|167911108|ref|ZP_02498199.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 112]
 gi|167919128|ref|ZP_02506219.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei BCC215]
 gi|254177694|ref|ZP_04884349.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 10399]
 gi|254179938|ref|ZP_04886537.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1655]
 gi|254188656|ref|ZP_04895167.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254199876|ref|ZP_04906242.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           FMH]
 gi|254206204|ref|ZP_04912556.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           JHU]
 gi|254259237|ref|ZP_04950291.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710a]
 gi|254358375|ref|ZP_04974648.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           2002721280]
 gi|52209900|emb|CAH35872.1| putative tRNA/rRNA methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|52426902|gb|AAU47495.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 23344]
 gi|121229914|gb|ABM52432.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           SAVP1]
 gi|124293857|gb|ABN03126.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           NCTC 10229]
 gi|126220110|gb|ABN83616.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 668]
 gi|126226717|gb|ABN90257.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1106a]
 gi|126242470|gb|ABO05563.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           NCTC 10247]
 gi|147749472|gb|EDK56546.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           FMH]
 gi|147753647|gb|EDK60712.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           JHU]
 gi|148027502|gb|EDK85523.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           2002721280]
 gi|157936335|gb|EDO92005.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160698733|gb|EDP88703.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia mallei
           ATCC 10399]
 gi|184210478|gb|EDU07521.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1655]
 gi|254217926|gb|EET07310.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 1710a]
          Length = 247

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   D   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD +    LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   + 
Sbjct: 125 IIAPRDRAAGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY       
Sbjct: 185 DTKLDGPVALVMGAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 244


>gi|295694816|ref|YP_003588054.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
           2912]
 gi|295410418|gb|ADG04910.1| RNA methyltransferase, TrmH family, group 3 [Bacillus tusciae DSM
           2912]
          Length = 268

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 112/253 (44%), Gaps = 12/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKT 95
           + R   + +   + G   V   L    R + +L   + A      +           +  
Sbjct: 16  RRRVQGESQRRRVVGRQPVLELLR-AGRPVNRLFIAEGAEGGSMAEITARAKEAGIVIIR 74

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           VP   +D+       HQG+  + AP     LD         R   L ++LD + DPHN+G
Sbjct: 75  VPRNRLDEWAS-GVNHQGVMADVAPFAYADLDECLRAAKLHRRPGLFVLLDGIEDPHNLG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A A + DG++  KR + + +  + K+++GA E +P IR+ NL   +  +   G++
Sbjct: 134 SILRTAEACAVDGVVVPKRRAAAVNETVVKASAGAAEFVPVIRVGNLGQTILALKRSGYR 193

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +G  ++ +            AL++G EGKGL    +E    + H+ M G + +LN   A
Sbjct: 194 VVGADTEGECDYTDVDYRVPTALVIGGEGKGLGRLVRERCDEVVHIPMAGRVNSLNAGVA 253

Query: 269 AAVALYITQNHFA 281
           A V LY      +
Sbjct: 254 AGVLLYEAIRQRS 266


>gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
           11300]
 gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
           11300]
          Length = 246

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 11/241 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + LYG + V  AL +   ++ ++L  +                 ++  P   +D++ G  
Sbjct: 1   MLLYGRNPVLEALRDG--RVTEVLVARGVEEAFVRSLK-AFDVRLRFAPRIELDQLAGTT 57

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+  E   L   T+D + +         L+++LD + DP N GAI+RSA      G
Sbjct: 58  Q-HQGVIAEVEDLAWATVDDILDRAEARGEDLLIVLLDGITDPRNFGAIIRSAEVLGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S   S V+ K+A+GA  ++P  +  NL   +  +   G    G + ++ + + 
Sbjct: 117 VVVEERRSAPLSPVVVKTAAGATSYLPVAQTKNLPRLIDALKEDGVWIYGAAGEAAQDIG 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   + K+AL++GAEG+GLR   +E   ++  +   G +++LN S AA + LY       
Sbjct: 177 RTDLSGKVALVIGAEGEGLRRLVREKCDALVRIPTRGQVQSLNASVAAGILLYEAARARD 236

Query: 282 K 282
           K
Sbjct: 237 K 237


>gi|157964809|ref|YP_001499633.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
 gi|157844585|gb|ABV85086.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
          Length = 256

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 137/253 (54%), Gaps = 8/253 (3%)

Query: 30  YKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           +K +  FN+ +++        ++YG H V +ALNNP R+I  +L T+      D +  L 
Sbjct: 7   HKLLTVFNKMQNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---DTNKKLI 63

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPH 145
                + V    + K++     HQG+A +  P+ S  L+ +   N +  + +LD + D  
Sbjct: 64  GTRSYEIVNNDILSKLLENH-THQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQ 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGAI+RSA AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   
Sbjct: 123 NIGAIIRSAAAFDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKH 182

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF  IGL+  +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNV
Sbjct: 183 GFWIIGLTGSANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNV 242

Query: 266 SNAAAVALYITQN 278
           SNAA++  +   N
Sbjct: 243 SNAASIIFHSLHN 255


>gi|260102409|ref|ZP_05752646.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|260083777|gb|EEW67897.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|323465877|gb|ADX69564.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           helveticus H10]
          Length = 250

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L    + KI ++      +   A   +         ++ VP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTQSADKINKVFLQHGIQEDFANQVYAICKKKRLVIQNVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L  +      L       D       L++LD + DPHN+G+ILRSA A 
Sbjct: 66  VD-GGNHQGLVLAISSFEYADLSKLLDQFDDEGKEPFLLMLDSIEDPHNLGSILRSADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWIFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +     K  L++G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 TDYREWNAKGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|227894574|ref|ZP_04012379.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227863733|gb|EEJ71154.1| tRNA-rRNA methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 252

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L    + KI ++      +   A   +         ++TVP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALAKKKRLVIQTVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V +   HQGL L  +      LD +            L++LD + DPHN+G+ILRSA A 
Sbjct: 66  V-EGGNHQGLVLAISSFEYADLDQLLDKFDQEEKEPFLLMLDSIEDPHNLGSILRSADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGII  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGIIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +     K  L++G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 VDYREWNAKGKAVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLYQAY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|88607795|ref|YP_504889.1| RNA methyltransferase [Anaplasma phagocytophilum HZ]
 gi|88598858|gb|ABD44328.1| RNA methyltransferase, TrmH family, group 3 [Anaplasma
           phagocytophilum HZ]
          Length = 258

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 14/240 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVG 106
           L++YG H   +AL NP+R   +LL T   + + D    L       ++ V    ID +VG
Sbjct: 10  LWIYGKHACLSALKNPNRVCIELLITHKFIDKNDPVIKLAKNRKIGIRDVEIAKIDSLVG 69

Query: 107 KEAVHQGLALETAPLLSPTLDAV------------RNSQLLMVLDHVNDPHNIGAILRSA 154
            +A+HQG+ L+  PL      ++              +  ++VLD V D HN+GA+LR+A
Sbjct: 70  SKAIHQGMLLKVLPLFGRNASSLIRIEDIVAQTEAAPTSTILVLDEVTDVHNVGAVLRTA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F+ D ++ T+  SPSES  +AK++SGA++ +P + I NL   L+ +    +   G  +
Sbjct: 130 ACFNVDAVVLTEHNSPSESCGMAKASSGAIDIVPVVCIGNLVKTLEYLKQKNYWCYGFDA 189

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                L Q   +++  +ILGAEGKG+R  T++    +  + M   +++LNVSNAAA+A+Y
Sbjct: 190 SGGTCLHQVEFSERRVVILGAEGKGMRHLTKKHCDHLVKIPMSEKMESLNVSNAAAIAMY 249


>gi|295692213|ref|YP_003600823.1| RNA methyltransferase, trmh family, group 3 [Lactobacillus
           crispatus ST1]
 gi|295030319|emb|CBL49798.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
           crispatus ST1]
          Length = 251

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALN-NPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L    + KI ++      +   A   +         V+ VP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTQSADKINKVFLQHGVQEEFANQVYSLAKKKRLVVQDVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L  +      L       DA      L++LD + DPHN+G+ILRSA A 
Sbjct: 66  VA-GGNHQGLVLAISSFEYADLNQLLDKYDAEGKEPFLLMLDSIEDPHNLGSILRSADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DGI+  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGIVIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWVFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +     K  L++G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 TDYREWNAQGKTVLVIGNEGKGIAPLLKKQMDQTITLPMVGHVQSLNASVATGVLLYQAY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|134295618|ref|YP_001119353.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134138775|gb|ABO54518.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 247

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 118/239 (49%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++L  +    R   +   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVAEVLYDQTRRDRRMQEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      +     LS  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARVEDVPLAQNLSELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG + ++   L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIIGTADEASGTLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 185 DTKLDGPVAIVMGAEGEGMRRLTRDTCDDVMSIPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|300869384|ref|ZP_07113971.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
 gi|300332611|emb|CBN59169.1| tRNA/rRNA methyltransferase [Oscillatoria sp. PCC 6506]
          Length = 362

 Score =  239 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 72/267 (26%), Positives = 127/267 (47%), Gaps = 17/267 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDAN 86
           K     ++ + + S  E   +YG H+V AAL    R + ++  T     +       +  
Sbjct: 87  KDSGPVDETAANLSDEETELIYGRHSVQAALEK-ERTLNRIWITPQLRYDPRFHSLVNQA 145

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLD 139
             +   V  V  + +D+I  + A+HQG+A + +      L  +           +L+V +
Sbjct: 146 KANGSIVDEVDFRRLDQITDR-AIHQGIAAQVSAYDYKELSELIAHAKSASEQPVLVVAE 204

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            +NDPHN+GAI+R+A A    G++  +R +   +A + K A+GALE+ P  R+ NL+ AL
Sbjct: 205 GLNDPHNLGAIIRTAEALGSQGMVIPQRRAVGITATVRKVAAGALENFPVARVVNLSRAL 264

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHLH 255
           +++ + GF   G ++   K +       K+A    L++G+EG GL    Q     +  + 
Sbjct: 265 EELKAAGFWIYGTAAKEGKAIHTVQFTGKLARPVVLVVGSEGDGLSLLIQRCCDELVSIP 324

Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282
           + G   +LNVS A  +ALY       +
Sbjct: 325 LRGNTPSLNVSVATGMALYEIYRQRGQ 351


>gi|254294464|ref|YP_003060487.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
           49814]
 gi|254042995|gb|ACT59790.1| RNA methyltransferase, TrmH family, group 3 [Hirschia baltica ATCC
           49814]
          Length = 272

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 141/262 (53%), Gaps = 8/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           +++  D  K    NQK     Q     ++++GVH V++AL N SRK  +   T+N   +L
Sbjct: 7   KQSFADNTKKNYKNQKKPTYQQLPEGEVWIWGVHAVASALKNNSRKKIRAFFTRNGAQKL 66

Query: 82  DWDAN-LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVL 138
             DA  LPH    +   P+ IDK+V  ++VHQG+ L    L     + V       +++L
Sbjct: 67  GLDAEHLPHYA--QLADPKDIDKLVPPDSVHQGVVLHARELDGVDFEDVLANGEGPIVIL 124

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+GA+ RS  AF    +I   R SP+    LAK+A GA++ IP + + N++ A
Sbjct: 125 DQVTDPQNVGAVFRSCAAFGAKAVIMQTRNSPNLGGALAKAAVGAIDIIPEVAVVNISRA 184

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMP 257
           +  +   G+  +G+  +++  + Q       +A+++GAEG G+RP   +  + +A + + 
Sbjct: 185 VTALSDAGWWVVGMDGNTEIDIAQAFDTPAPLAIVMGAEGSGIRPLIAKGCSQLAKISIS 244

Query: 258 GIIKALNVSNAAAVALYITQNH 279
             +++LNVS+AA++ALY     
Sbjct: 245 PQMESLNVSSAASIALYEANRQ 266


>gi|220917468|ref|YP_002492772.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 256

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 12/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YGV+ V   L      + ++      T+ A               V+  P   +D++ 
Sbjct: 3   VVYGVNPVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRAAPRAKLDRLA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G +  HQG+    A      L+ +           LL+VLD V DPHN+GAI+RSA A  
Sbjct: 63  GTDR-HQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +  +   +  +AK+++GA+E  P  R++N+   L+++   G  ++ L++D ++
Sbjct: 122 SHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVALAADGER 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           PL +       AL+LG+EG+G+RP  + T    A + M G + +L+VS +AAVALY    
Sbjct: 182 PLGEVDLKGPTALVLGSEGEGIRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|51473842|ref|YP_067599.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
 gi|51460154|gb|AAU04117.1| tRNA/rRNA methyltransferase [Rickettsia typhi str. Wilmington]
          Length = 248

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 138/245 (56%), Gaps = 7/245 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++  +   + ++YG H V +A+NNP R+I  +L T+      D +  L    P + V  
Sbjct: 8   QNKQLNYQNSYYMYGKHPVFSAINNPKRQIENILCTREIF---DINKKLIGTRPYEIVNN 64

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155
             I K++ K   HQG+A +  P+ S  LD +   N Q  +++LD + D  NIGAI+RSA 
Sbjct: 65  YIISKLL-KHQTHQGIAAKVRPIFSYNLDDIDINNPQCKIVILDQITDTQNIGAIIRSAA 123

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IG++  
Sbjct: 124 AFYINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLCSYMNYLKKRGFWIIGVTGY 183

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +    +  +DKIAL+ GAE KG+R   +ET   +A + +   +++LNV+NAA++  + 
Sbjct: 184 ANEYFTDKFISDKIALVFGAEDKGMRRLVKETCDYLAKIPISKSVESLNVANAASIIFHS 243

Query: 276 TQNHF 280
               F
Sbjct: 244 LHKSF 248


>gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 428

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 14/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDK 103
             +++G H+V AALN+  R I ++  T    +   +   L         ++ VP   + +
Sbjct: 188 EDWIWGKHSVFAALNS-ERPINRIWCTSEIFSSEKFYLLLKDLKSKGVLIEEVPWSRLSQ 246

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +    AVHQG+AL+ A   S +L+ +        ++ +++ LD V DPHN GAI+RSA A
Sbjct: 247 LTS-GAVHQGVALQHASTESISLEKLIDISKSKSSNPIIVALDGVTDPHNFGAIIRSAEA 305

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F C GII  +R S   +  +AK A+GALEHIP  R+ NL  A+ ++   GF  IGLS D 
Sbjct: 306 FDCKGIIVPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKKGFIIIGLSGDG 365

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYI 275
           + P+ +  +   + +I+GAE KG+    Q+    +  + + G   +LN S AAA+   Y+
Sbjct: 366 QVPISEFKEKAPVVVIVGAENKGISLLVQKKCDYLLKIPLKGKTSSLNASVAAAISLCYL 425

Query: 276 TQN 278
           + N
Sbjct: 426 SNN 428


>gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL1A]
 gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL1A]
          Length = 442

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 18/289 (6%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           N   +K +   +  K+S  A   +   + + +      S+  S   +  ++G H+  AAL
Sbjct: 133 NRFERKSTNPAYRNKNSQRASSYKREENNEPLSYSESFSKTLS---DDLIWGRHSTEAAL 189

Query: 62  NNPSRKIFQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
               R I ++  T    +     +L  D        V+ V    + ++    AVHQG+ L
Sbjct: 190 V-GGRAIHRIWCTSELRSTPKFFQLLKDQK-ASGVLVEEVSWSRLGQLT-NGAVHQGIVL 246

Query: 117 ETAPL----LSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           + A      L   +DA +   +S LL+ LD + DP N+GAI+RSA A    G+I  +R S
Sbjct: 247 QIAASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRS 306

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +  +AK A+GALEH+P  R+ NL  +L+K+   G+  +GL+ +    L +      +
Sbjct: 307 AGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPL 366

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +++G+E KG+   T+     +  + + G+  +LN S A ++ LY    
Sbjct: 367 VVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVAR 415


>gi|227834034|ref|YP_002835741.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 316

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 140/295 (47%), Gaps = 28/295 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++  K  H AKL R  R+           RH  +   + + G + V   L
Sbjct: 35  KGPTPKAEDRVYHAK--HKAKLERERRN---------SGRHDKETAEMVV-GRNPVIECL 82

Query: 62  NN--PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +   P+  ++ +  T+N  ARL     +      P+  V    +D++ G   +HQG+ L+
Sbjct: 83  HAKVPATSLYIVQGTRN-DARLSEAVAMCNTRNIPILEVQRHEMDRMTG-NGMHQGIGLQ 140

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +  +       +   + ++LD++ DP N+GA++RS  AF   G+I  +R S 
Sbjct: 141 IPPYKYADVHDLMDRARDAQEPGMFVILDNITDPRNLGAVIRSVAAFGGHGVIIPERRSA 200

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229
           S +AV  ++++G    +P  R++N+T  +Q     G+Q +GL +  +  L+      D +
Sbjct: 201 SVTAVAWRTSAGTAARLPVARVTNVTRTVQDFQKAGYQVVGLDAGGEHTLDTYNGGTDPV 260

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
            +++G+EGKG+    +E   ++  + M   +++LN S AA   L  +  Q   A+
Sbjct: 261 VIVIGSEGKGISRLVRENCDAIMSIPMTDWVESLNASVAAGAVLSEFARQRRAAQ 315


>gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
 gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
          Length = 251

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 21/268 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K++         + +KK+    +K R   +     L G H V  A+ + +  + 
Sbjct: 2   KRIESPKNARV-------KQWKKL--LTKKGRD--ETGLFLLEGFHLVEEAIKSNA-PLV 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+  +       W+       PV  V    +  I   E   QG+A      LS  L+ V
Sbjct: 50  ELIVDERTAVPPGWNVT---GVPVTIVTEAVMKAISSTE-TPQGIAA-VCRQLSTELEGV 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +   +++D V DP N+G ++R+A A   D +I  +  +   +  + ++  G+L H+P 
Sbjct: 105 KTA---LLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  +L   + +    G    G + ++        ++   AL+ G EG G+RP      T
Sbjct: 162 VK-GDLAQWIARFKEQGIPVYGTALENAVDYRTVPQSPSFALLFGNEGSGVRPDLLRLTT 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AA + LY  Q
Sbjct: 221 ENVYIPIYGRAESLNVAVAAGILLYSLQ 248


>gi|77163754|ref|YP_342279.1| RNA methyltransferase TrmH, group 3 [Nitrosococcus oceani ATCC
           19707]
 gi|76882068|gb|ABA56749.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosococcus oceani ATCC
           19707]
          Length = 274

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/241 (32%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLP--HPFPVKTVPPQTIDKIVGKE 108
           YG+H V AAL  P+ ++  L   +  + R L   A L        + V  + +D +V   
Sbjct: 31  YGLHAVRAALEQPALQVMALWLDQARIDRSLQKLAKLAFQRGLKAQLVKREELDDLV-PG 89

Query: 109 AVHQGLALETA--PLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+    +  P L+       L+ +    LL++LD V DPHN+GA LR+A A    G
Sbjct: 90  ARHQGVVARCSVQPALTEEGLLTFLENLEAPPLLLLLDGVQDPHNLGACLRTAEAAGVHG 149

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPL 220
           ++T K  +   +AV  K ASGA E IP +R++NL   ++ +   G   +G         L
Sbjct: 150 VVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGGSHNSL 209

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      + L+LGAE +GLR  TQE    +  + M G + +LNVS AA V L+  Q   
Sbjct: 210 YETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 269

Query: 281 A 281
            
Sbjct: 270 G 270


>gi|82703073|ref|YP_412639.1| RNA methyltransferase TrmH, group 3 [Nitrosospira multiformis ATCC
           25196]
 gi|82411138|gb|ABB75247.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 249

 Score =  239 bits (611), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 9/242 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + F++G H +++ L   +  + ++      ++  AR            +       +  
Sbjct: 3   GSRFIFGFHAITSRLRQNAASVREVFLDAERRDQRARDLAALAEAQDIRLIACDNARLMA 62

Query: 104 IVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + G  A HQG+            +   LD +    LL+VLD + DPHN+GA LR A AF 
Sbjct: 63  LAG-NARHQGVVARIDSARAYVDIDDVLDTLAEPALLLVLDGIQDPHNLGACLRVADAFG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  +   +A + K ASGA +++PYI ++NL   L+ +   G   +G ++D+  
Sbjct: 122 VHAVIAPKDRAVGLTAAVHKVASGAADNVPYISVTNLARTLRGLKQRGVTVLGTAADADT 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L        IA +LG+E KG+R  T+E    +  + M G +++LNVS +A + L+ T  
Sbjct: 182 QLGVLQLAGPIAWVLGSEEKGMRRLTRENCDQLVSIPMLGSVESLNVSVSAGICLFETHR 241

Query: 279 HF 280
             
Sbjct: 242 QR 243


>gi|296157637|ref|ZP_06840471.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           Ch1-1]
 gi|295891883|gb|EFG71667.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           Ch1-1]
          Length = 247

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +        R   +   A       +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+         A  L+  LD +  S L++VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      A
Sbjct: 185 DTELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRA 244


>gi|325661898|ref|ZP_08150519.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325471876|gb|EGC75093.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 251

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 109/240 (45%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +  P  K+F L   ++   R        H   +  V  + +D++  + 
Sbjct: 14  IEGRNAVLEAFRSGKPVDKLFVLDGCQDGPVRTIVREAKKHDTILNFVSKERLDQL-SET 72

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A      ++ +             ++LD++ DPHN+GAI+R+A      G
Sbjct: 73  GKHQGVIAHAAAYEYSEIEDMFALAEKRGEDPFFILLDNIEDPHNLGAIIRTANLAGAHG 132

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   +A +AK+++GAL + P  +++NL   ++++ + G   +      +  + 
Sbjct: 133 VIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKARGLWFVCADMGGE-SMY 191

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +      I L++G EG+G+    +E    +A + M G I +LN S AA V  Y       
Sbjct: 192 RMNLTGPIGLVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLAYEIVRQRG 251


>gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547]
 gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM
           20547]
          Length = 323

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 12/272 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
            + RR  +     +        + +     + G + V  AL    P+  ++ + +T  + 
Sbjct: 51  KRARRAEKSAGGQRPVRGSKARSGKDSTEMVLGRNAVLEALRTQVPATHLY-VASTIESD 109

Query: 79  ARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---- 132
            R+     L      P+       +D++   E VHQGL L+  P     LD + ++    
Sbjct: 110 DRVKEALRLASEQGVPLLEAGRPELDRLSNGE-VHQGLVLQVPPYTYGDLDTLLDATADV 168

Query: 133 -QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + LD + DP N+GAI+RSA AF   GII T+R S   +A   ++++GA   +P  R
Sbjct: 169 TPLFVALDGITDPRNLGAIIRSAAAFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVAR 228

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATS 250
           ++NL  ALQ++ S G   IGL +D    L    +  D + +++G+EGKG+   T+E    
Sbjct: 229 VTNLNRALQELRSQGIFVIGLDADGDVELPGLPLAPDPLVVVVGSEGKGISRLTREHCDQ 288

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +  + M    ++LN   AAAV LY      A+
Sbjct: 289 IVSIPMTAGNESLNAGTAAAVTLYEIARERAQ 320


>gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Paulinella chromatophora]
 gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           [Paulinella chromatophora]
          Length = 526

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 13/249 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVP 97
            +S+ E   ++G H+  AAL +  R I ++  T    +   +   L         V+ V 
Sbjct: 184 KSSETEKDLIWGRHSTQAALESG-RPIHRIWCTSEVKSSSKFLQLLKKVKASSVLVEEVS 242

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
              + +++G    HQG+AL+ A + +  L  +         + LLM ++ + DPHN+GAI
Sbjct: 243 WARLGQLIGGSG-HQGIALQMAAVETLDLTKLIEDCCHLGENPLLMAVEGLTDPHNLGAI 301

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA A    G+I  +R +   +  +AK A+GALEH+P  R+ NL  +L  +   G++ +
Sbjct: 302 VRSAEALGAHGLILPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSLDILKDKGYRIV 361

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL+++    L +   N  + ++ G+EG GL   T+     +  + + G   +LN S A+A
Sbjct: 362 GLATEGDVSLTEADLNGPLVIVTGSEGNGLSLLTRRYCDQLIRIPLRGATPSLNASVASA 421

Query: 271 VALYITQNH 279
           + LY     
Sbjct: 422 LMLYEVARR 430


>gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798139|gb|EDN80559.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
           17982]
          Length = 325

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 15/290 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           + K  ++ +    +H  K++R  R+ ++  +     KS    +P +  + G + V+ A  
Sbjct: 38  TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95

Query: 63  N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
              P  ++F L   K+               PV  V  + +D +    AVHQG+A+E   
Sbjct: 96  ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRG 154

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                   +           LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +
Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALI 232
               K ++GA   +P  R++NL  AL++    G+  +GL      PL    + +  + ++
Sbjct: 215 TTAWKVSAGAAARVPVARVTNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GAEG GL    +ET   +  + +   +++LN + A  +ALY   +  A+
Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQ 324


>gi|68535387|ref|YP_250092.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 318

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 132/284 (46%), Gaps = 21/284 (7%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKS-----RHTSQPENL-FLYGVHTVSAALNN--PSRKIF 69
           +  A+ R  H  YK+ Q+  +++     R       +  + G + V   L+   P+  ++
Sbjct: 37  TPKAEDRVYHAAYKRKQAAKRRASGAHDRFAKDDNQVELVVGRNPVIECLHAKVPATALY 96

Query: 70  QLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
               TKN   RL    +        V  V    +D++ G   +HQG+ L+  P     ++
Sbjct: 97  VAEGTKN-DERLAEAVHTCADRGISVLEVSRAELDRMTG-NGMHQGIGLQIPPYQYTQVE 154

Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +           L++ LD++ DP N+GA++RS  AF   G+I  +R S S +AV  +++
Sbjct: 155 DLIQQAASAPQPGLVVALDNITDPRNLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTS 214

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +G    +P  + +N+  +L++    G+Q +GL +     L+         +++G+EGKGL
Sbjct: 215 AGTAARLPVAKATNMVRSLKQFQQAGYQVVGLDAGGDHTLDTYDGTTPTVIVVGSEGKGL 274

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
                ET  ++  + M   +++LN S AA V L  +  Q   AK
Sbjct: 275 SRLVSETCDTIMSIPMAKWVESLNASVAAGVVLSEFARQRRAAK 318


>gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 254

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EVIVKVLRETETTQGVFAVCEKHES---EVA 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|254435674|ref|ZP_05049181.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
           AFC27]
 gi|207088785|gb|EDZ66057.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus oceani
           AFC27]
          Length = 259

 Score =  239 bits (610), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 79/241 (32%), Positives = 118/241 (48%), Gaps = 12/241 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLP--HPFPVKTVPPQTIDKIVGKE 108
           YG+H V AAL  P+ ++  L   +  + R L   A L        + V  + +D +V   
Sbjct: 16  YGLHAVRAALEQPALQVMALWLDQARIDRSLQKLAKLAFQRGLKAQLVKREELDDLV-PG 74

Query: 109 AVHQGLALETA--PLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+    +  P L+       L+ +    LL++LD V DPHN+GA LR+A A    G
Sbjct: 75  ARHQGVVARCSVQPALTEEGLLTFLENLEAPPLLLLLDGVQDPHNLGACLRTAEAAGVHG 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPL 220
           ++T K  +   +AV  K ASGA E IP +R++NL   ++ +   G   +G         L
Sbjct: 135 VVTPKDRAAGLTAVARKVASGAAERIPLVRVTNLARVMRALRERGLWLVGTVVGGSHNSL 194

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      + L+LGAE +GLR  TQE    +  + M G + +LNVS AA V L+  Q   
Sbjct: 195 YETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 254

Query: 281 A 281
            
Sbjct: 255 G 255


>gi|313902851|ref|ZP_07836248.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466971|gb|EFR62488.1| RNA methyltransferase, TrmH family, group 3 [Thermaerobacter
           subterraneus DSM 13965]
          Length = 306

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 10/241 (4%)

Query: 51  LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G   V   L   +P R ++     + A              PV  + P  + + V  E
Sbjct: 44  VEGRQPVLELLRSGHPVRHVWVAAGRRGAALAELEALARRRGVPVTEIDPAELQRRVQTE 103

Query: 109 AVHQGLALETAPLLSPT-LDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    APL  P  LD +      R   LL++   + DPHN+GA+ RSA A    G
Sbjct: 104 G-HQGVIALAAPLPQPDPLDLLEVASRRREPPLLVICAGIQDPHNLGAVFRSAEAAGAHG 162

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
            +     S        KS++GAL H+   +++NL   +++    G   +    +  +P +
Sbjct: 163 AVVPVHRSAPLGPTAFKSSAGALVHLAVAQVANLNQVVRRFKEQGVWVVAADPEGAQPYD 222

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q       AL+LG+EG+G+ P           + M G + +LNVS AA + L+       
Sbjct: 223 QWDWTRPTALVLGSEGRGIPPLLLRQCDGRVFIPMAGKVASLNVSVAAGILLFEAARQRR 282

Query: 282 K 282
           +
Sbjct: 283 Q 283


>gi|187923698|ref|YP_001895340.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           phytofirmans PsJN]
 gi|187714892|gb|ACD16116.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           phytofirmans PsJN]
          Length = 247

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  + ++        R   +   A       +       +  +  
Sbjct: 6   VLYGFHAVTARMRHDASTVEEVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+         A  L+  LD +  S L++VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      +
Sbjct: 185 DTELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244


>gi|160932770|ref|ZP_02080159.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
 gi|156867844|gb|EDO61216.1| hypothetical protein CLOLEP_01611 [Clostridium leptum DSM 753]
          Length = 255

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 13/249 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPP 98
             ++P    + G + V  AL   +R I  +L  + A      D           VK V P
Sbjct: 4   KRTEPAQDVIAGRNAVKEAL-CSARPIESILVARGARNGSLGDIVSKAKAQGVAVKEVDP 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAIL 151
           + ++ +    A HQG+    A     ++       D       L+V D +NDPHN+GAIL
Sbjct: 63  KRLEFLC-PGANHQGIVALAAAHEYASVEDMLALADERGEPPFLIVADELNDPHNLGAIL 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G+I  KR S   +  + K+++GALE++P  R+SNL  AL+ +   G    G
Sbjct: 122 RTAECTGAHGVIIPKRRSAGLTYTVGKASAGALEYVPVARVSNLAAALEDLKKRGLWIYG 181

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +   P  +       AL++G+EG G+    +E    +  L M G I +LN S AA V
Sbjct: 182 ADMEG-TPWCEAELTGPAALVIGSEGAGIGRLVKEKCDVILSLPMRGKINSLNASVAAGV 240

Query: 272 ALYITQNHF 280
            +Y      
Sbjct: 241 LMYEFMRQR 249


>gi|189460114|ref|ZP_03008899.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
 gi|189433156|gb|EDV02141.1| hypothetical protein BACCOP_00750 [Bacteroides coprocola DSM 17136]
          Length = 250

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 15/247 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            +N  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I+
Sbjct: 3   EKNEMIFGVRAVIEAIQAGKE-IDKVLVKKDIQSDLSKELFAVLKETFIPVQRVPVERIN 61

Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  K   HQG+    +P+         P L     + LL++LD + D  N GAI R+  
Sbjct: 62  RITKK--NHQGVVAFISPITYQRTEDIVPFLFEQGKNPLLIMLDGLTDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  IP  R +NLT+ ++ +   GF+ +  +  
Sbjct: 120 CAGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +    D   +I+GAE  G+  +          + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKATYTDPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGSIESLNVSVAAGILIYE 239

Query: 276 T--QNHF 280
              Q  F
Sbjct: 240 AVKQRGF 246


>gi|91783279|ref|YP_558485.1| RNA methyltransferase TrmH, group 3 [Burkholderia xenovorans LB400]
 gi|91687233|gb|ABE30433.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 247

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +        R   +   A       +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+         A  L+  LD +  S L++VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARAGDMPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVVGTAGEATKSLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +  +AL++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      +
Sbjct: 185 DTELDGPVALVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244


>gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis
           SP1PR4]
          Length = 263

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 12/243 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIV 105
             LYG+H V  A+ +  R +  +  ++    ARLD            + + P   ID++ 
Sbjct: 2   ELLYGLHPVQEAVRSRPRDLDHITISRERKDARLDALVESARSAGIRITSEPRAQIDRMA 61

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             E +HQG+        +  ++ +          +  + LD V DPHN+GA+LR+A    
Sbjct: 62  KTE-MHQGVIAFLRERRALAVEDLLAVQKPDGQRRFFLALDGVEDPHNLGALLRTADGAG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DGI+  +R S   +AV+AK+++GA EH+   +++NL  AL++M       IGL      
Sbjct: 121 VDGILLPERRSAPITAVVAKTSAGATEHVRIAKVTNLVRALERMKKDNIWVIGLDERGTP 180

Query: 219 PLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        L+LG+EG GL    ++T   +  + M G + +LNVS A AV +Y   
Sbjct: 181 DYTDFDFAPTDCVLVLGSEGAGLHDLVKKTCDYLLRIPMAGGVSSLNVSVAGAVVMYEVA 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|170017894|ref|YP_001728813.1| rRNA methylase [Leuconostoc citreum KM20]
 gi|169804751|gb|ACA83369.1| rRNA methylase [Leuconostoc citreum KM20]
          Length = 253

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 64/250 (25%), Positives = 118/250 (47%), Gaps = 13/250 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKT 95
           K    +  +  F+YG +    +L   +++I ++      ++ +              ++ 
Sbjct: 2   KREQGTADQAEFVYGHYASVESLK-GTQEINKVWLQTGLQDKIRNEITQLAKKRGLVIQQ 60

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
            P   +D++      HQG+ L  A     T+D +         +   ++LD + DPHN+G
Sbjct: 61  APKSKLDELTD-GGNHQGVVLSVAAFAYATVDDLFDFADAHHEAPFFLILDGIEDPHNLG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +ILR+A A    GII  KR +   +A +AK ++GA+EH+P  R++NL + + ++   G  
Sbjct: 120 SILRTADAAGVHGIIIPKRRAVQLTATVAKISTGAIEHVPVARVTNLVNVVGELKDRGVW 179

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G          +       AL++G EGKG+ P  ++   SM  + M G +++LN S A
Sbjct: 180 VFGTDMSG-DDYRRWDAKGPTALVIGNEGKGISPLLKKKVDSMLTIPMVGHVQSLNASVA 238

Query: 269 AAVALYITQN 278
           A++ +Y   N
Sbjct: 239 ASLLIYQGFN 248


>gi|294634465|ref|ZP_06713000.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
           ATCC 23685]
 gi|291091979|gb|EFE24540.1| RNA methyltransferase, TrmH family, group 3 [Edwardsiella tarda
           ATCC 23685]
          Length = 228

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 8/222 (3%)

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP------ 120
           ++F +   ++                V+    Q +D+ V + AVHQG+     P      
Sbjct: 5   EVFVMKGREDRRLLPLLQQLEEGGIRVQVAQRQWLDEKV-EGAVHQGIVARVKPGRQYQE 63

Query: 121 -LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L   L ++ +   L++LD V DPHN+GA LRSA A   D +I  +  S   +A   K 
Sbjct: 64  NDLPDLLASLDHPPFLLILDGVTDPHNLGACLRSADAAGIDAVIVPRDRSAQLNATAKKV 123

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A GA E +P IR++NL   ++ +       IG + ++   L Q      +AL++GAEG G
Sbjct: 124 ACGAAESVPLIRVTNLARTMRLLQEENIWIIGTAGEADHSLYQSKMAGAMALVMGAEGDG 183

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +R  T+E    +  + M G + +LNVS A  + L+      +
Sbjct: 184 MRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 225


>gi|213618544|ref|ZP_03372370.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 220

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 7/220 (3%)

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--- 123
           K   L   ++        A       ++    Q +D+     AVHQG+     P      
Sbjct: 1   KPLILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK-SDGAVHQGIIARVKPGRQYQE 59

Query: 124 ---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P L A+ +   L++LD V DPHN+GA LRSA A     +I  K  S   +A   K A
Sbjct: 60  NDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVA 119

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            GA E +P IR++NL   ++ +       +G + ++   L Q     ++AL++GAEG+G+
Sbjct: 120 CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGRMALVMGAEGEGM 179

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           R  T+E    +  + M G + +LNVS A  + L+      
Sbjct: 180 RRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQR 219


>gi|238027543|ref|YP_002911774.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237876737|gb|ACR29070.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia glumae
           BGR1]
          Length = 250

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKI--VG 106
            LYG H V+A L + +  + ++L  +    R   D         V+ +      ++  + 
Sbjct: 6   VLYGFHAVTARLRHDASTVAEVLYDQTRRDRRMTDFLQTAKEAGVRLIAADE-TRLWGLA 64

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+      L     L+  LD ++   LL+VLD V DPHN+GA LR A A     
Sbjct: 65  HTERHQGVVARVEDLPLAQNLAELLDGIQGPALLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   IG + D+   L 
Sbjct: 125 IIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTADDAPASLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +AL++GAEG+G+R  T++T   + +L M G +++LNVS A+ V LY      
Sbjct: 185 ETKLDGPVALVMGAEGEGMRRLTRDTCDDVMNLPMAGSVESLNVSVASGVCLYEAVRQR 243


>gi|295425603|ref|ZP_06818290.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
 gi|295064619|gb|EFG55540.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
          Length = 251

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 115/246 (46%), Gaps = 13/246 (5%)

Query: 44  SQPENLFLYGVHTVSAALN-NPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQ 99
           +  +  F++G H     L    + +I ++      +   A   +         V+T P  
Sbjct: 2   TSNDKDFVFGRHAGLDFLKTQSADRINKVFLQHGVQEDFANQVYALAKKKRLVVQTAPKN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            +D++V     HQGL L  +      LD +            L++LD + DPHN+G+ILR
Sbjct: 62  KLDRLVA-GGNHQGLVLAVSSFEYADLDQLLDEFDQVGKEPFLLMLDSIEDPHNLGSILR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D II  KR++   ++V+AK+++GA++++P  R++NL    + +   G+   G 
Sbjct: 121 SADATGVDAIIIPKRHASGLTSVVAKTSTGAIDYVPVARVNNLVQTTKNLKKRGYWIFGT 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                    Q   N K  L++G EGKG+ P  ++       L M G +++LN S A  + 
Sbjct: 181 DMKG-TDYRQWNANGKTVLVIGNEGKGIAPLLKKQMDQTLTLPMVGHVQSLNASVATGIL 239

Query: 273 LYITQN 278
           LY   N
Sbjct: 240 LYQMLN 245


>gi|218134245|ref|ZP_03463049.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991620|gb|EEC57626.1| hypothetical protein BACPEC_02137 [Bacteroides pectinophilus ATCC
           43243]
          Length = 248

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V+ AL +     K+F L   ++   R        H   +  V  + +D +
Sbjct: 6   EELTIEGRNAVTEALRSGRPVDKLFVLDGCQDGPVRTIIREAKKHDTIINFVSKERLDSM 65

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      +  +            + +LD + DPHN+GAI+R+A   
Sbjct: 66  -SETGKHQGVIAYAAAYEYAEVQDILDAAGEKGEPPFIFILDGIEDPHNLGAIIRTANLA 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GA+ + P  +++N+   ++++   G   +  + D +
Sbjct: 125 GAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNIAQTIEELKKEGMWFVCAAMDGE 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +        I L++GAEG+G+    +E     A + M G I +LN S AA V  Y   
Sbjct: 185 V-MYNLDLKGPIGLVIGAEGEGVSRLVREKCDFTASIPMKGNIDSLNASVAAGVLAYEIV 243

Query: 278 NHF 280
              
Sbjct: 244 RQR 246


>gi|78779235|ref|YP_397347.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712734|gb|ABB49911.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9312]
          Length = 336

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 150/297 (50%), Gaps = 24/297 (8%)

Query: 4   ISKKKSEKIFSLKDSHYAK-----LRRNHRDYKKMQSFNQKSRH------TSQPENLFLY 52
           I   K++ + +L +S+  K     L+++    K     +  S+         +  + +++
Sbjct: 41  IHSSKNQGVNNLDESYKKKDNFSYLKKSKPINKSNIKVSSNSQDIYQDLANKKNFDDWIW 100

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKE 108
           G H+V  AL N  R I ++  T    +   +   L         ++ V    + ++    
Sbjct: 101 GKHSVFEALIN-QRAINRIWCTSEIFSSEKFYILLKELKSKGVLIEEVSWNRLSQLT-FG 158

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+AL+ A   + +L+ +        ++ +++ LD + DPHN+GAI+RSA AF C G
Sbjct: 159 ASHQGVALQLACSKTISLEKLIDFSKRNTSNPIILALDGITDPHNVGAIIRSAEAFDCKG 218

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +R S   +  +AK A+GALEH+P  R+ NL  AL+++   GF  IGLS D +  + 
Sbjct: 219 IIIPQRRSAGLTGTVAKVAAGALEHLPVSRVVNLNRALEELKKNGFMVIGLSGDGQLSIS 278

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  +   + +I+GAE KG+   TQ+    +  + + G   +LN S AAA++L+   N
Sbjct: 279 KFHEKTPLVVIVGAEDKGISLLTQKKCDFLLKIPLKGKTSSLNASVAAAISLFHLTN 335


>gi|239948322|ref|ZP_04700075.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922598|gb|EER22622.1| RNA methyltransferase, TrmH family, group 3 [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 240

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 135/239 (56%), Gaps = 7/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      D +  L      + V  
Sbjct: 2   QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +  +HQG+A +  P+ S  L+   ++N +  + +LD + D  NIGAI+RSA 
Sbjct: 59  DILSKLL-ENQIHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  
Sbjct: 118 AFDINAIILPQDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      ++ +DKIAL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 ANDYFTDKLISDKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 236


>gi|18311406|ref|NP_563340.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens str. 13]
 gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens CPE str. F4969]
 gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens D str. JGS1721]
 gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str.
           13]
 gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens CPE str. F4969]
 gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens D str. JGS1721]
          Length = 289

 Score =  238 bits (609), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 126/284 (44%), Gaps = 16/284 (5%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNN 63
            K   K   L       L R  R  ++  + N ++    + +     + G + V   L +
Sbjct: 2   TKSENKYKQLTRKQKYALEREQRAREEKYARNTRTFTEEEVKVREDLVEGRNAVIELLKS 61

Query: 64  PSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
             + I Q+       + ++ ++   A       VK V  + +D ++ +   HQG+  +  
Sbjct: 62  D-KTIEQIFIANGKMEGSINKILGLAK-EKKIVVKEVDRKKLD-LMSETKAHQGVIAQIT 118

Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           P    T++ +            +++LD + DPHN+G+I+R+A      GII  KR +   
Sbjct: 119 PFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGV 178

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  + K++ GA+EH+   +++N+ +A++++ +      G     ++   +        +I
Sbjct: 179 TGTVYKASVGAIEHMKIAKVTNINNAIEELKANNVWIYGADIAGEEYSYETNFKGACGII 238

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G+EG+G+   T++    +  + M G I +LN S A  + +Y  
Sbjct: 239 IGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEV 282


>gi|205372087|ref|ZP_03224904.1| 23S rRNA methyltransferase [Bacillus coahuilensis m4-4]
          Length = 246

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 14/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKT--VPPQTIDKI 104
             ++ G + V  AL    R I ++   + +   ++     L     V+   VP + +D++
Sbjct: 3   TDYIAGKNPVIEALK-AGRDINKIWVAEGSQKGQMQQVLGLAKESSVQVLFVPKKKMDQM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQG+  + A     +LD +         + L+++LD + DPHN+G+I+R+A A 
Sbjct: 62  VS---NHQGVVAQVAAYQYSSLDDMFALAESRGETPLVLLLDELEDPHNLGSIMRTADAV 118

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK+++GA+EHIP  R++NL+  + ++   G    G  +  K
Sbjct: 119 GAHGIIIPKRRAVGLTATVAKASTGAIEHIPVARVTNLSQTIDELKERGIWVTGTDAKGK 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   Q   +  + L++G+EGKG+    +E    +  L M G + +LN S AA++ LY   
Sbjct: 179 QDYRQMDASMPLCLVIGSEGKGMSRLVKEKCDFLVQLPMRGHVTSLNASVAASLLLYEVH 238

Query: 278 N 278
            
Sbjct: 239 R 239


>gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
 gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
 gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
 gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
          Length = 265

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSIQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|317132980|ref|YP_004092294.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
           harbinense YUAN-3]
 gi|315470959|gb|ADU27563.1| RNA methyltransferase, TrmH family, group 3 [Ethanoligenens
           harbinense YUAN-3]
          Length = 258

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPP 98
              + +   L G + V  AL    R +  +L  K       R   +        +K V  
Sbjct: 5   KREKRKEDVLVGRNAVFEALR-AGRPVDSVLIAKGNSGGPVRRIVELCRERGVVIKDVSS 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
             +D I G    HQG+A   A      +  +            L++ D +NDPHN+GAI+
Sbjct: 64  VKLDAICG-GMSHQGVAAMAAAHEYVGVSDMLHAAKERGEPPFLVICDEINDPHNLGAII 122

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G+I  KR +   +A + K+ASGALE++P  R+SNL   ++++   G    G
Sbjct: 123 RTAECCGAHGVIIPKRGAVGLTAAVDKAASGALEYMPVARVSNLAATVEELKKEGVWVYG 182

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D  +P  +   +   A+I+G+EGKG+    +E    +  + M G I +LN S AA +
Sbjct: 183 TDMDG-QPFYETDFSGGAAVIIGSEGKGISRLLREKCDVVVSIPMRGRITSLNASVAAGI 241

Query: 272 ALYITQN 278
            LY    
Sbjct: 242 VLYEAAK 248


>gi|319937667|ref|ZP_08012070.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319807102|gb|EFW03716.1| 23S rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 243

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 117/236 (49%), Gaps = 9/236 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ-TIDKIVGKE 108
           ++YG +TV  +L    + ++++   KNA               V  V  +  ++++VG  
Sbjct: 4   YIYGKNTVLESLK-GEKPVYEIYMMKNAKDEKLLSLAKAKNAKVNIVAHKGVLNQLVG-N 61

Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            VHQG+  +T      ++D + ++       LL++LD + DPHN+GAILR+  A   DG+
Sbjct: 62  VVHQGVVAQTEGYGYSSIDEIIDAIPKGKQPLLLMLDGLEDPHNLGAILRTCDAIEVDGV 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   ++ +AK ++GA++++   +++NL+  L  +   GF  +G   +  +    
Sbjct: 122 IIGKNRSVGLTSTVAKVSTGAIDYVKVAQVTNLSRTLDDLKKRGFWVVGCELNESQDYRA 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              N  + +++G+EG G+    +        L M G + +LN S A A+ LY   N
Sbjct: 182 IDYNMPLVIVVGSEGFGISKLVKSHCDMNVVLPMTGHVTSLNASVATALILYQVYN 237


>gi|323526270|ref|YP_004228423.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383272|gb|ADX55363.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1001]
          Length = 247

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +        R   +   A       +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHAAKEAGVRLIAADETRLWGLAR 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD +  S L++VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARAGDLPLAQNLAELLDGINGSPLILVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++ K L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKDAGVWIVGTAGEATKSLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      +
Sbjct: 185 ETELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244


>gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
 gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
          Length = 312

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 28/292 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++    +H  KL R  RD           RH  + E   + G + V   L
Sbjct: 33  KGPTPKAEDRVYHA--AHKRKLERQRRD---------SGRHERE-EADLVVGRNPVVECL 80

Query: 62  NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            +       LL  +      RL     +      PV  VP + +D + G   +HQG+ L+
Sbjct: 81  -HAKVPSEALLIAQGTGHDDRLSEAVQMANTRGIPVHEVPRRDLDNMTG-NTLHQGIGLK 138

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +  +         + + +VLD++ DP N+GA++RSA AF   G+I  +R S 
Sbjct: 139 IQPYKYADVFDLIGGVRDRGETGMFVVLDNITDPRNLGAVIRSAAAFGGHGVIIPERRSA 198

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229
             + V  ++++G    +P  R +NLT  +++    G+  +GL +  +  L+      D +
Sbjct: 199 QVTGVAWRTSAGTAARLPVARATNLTRTIKEFKDNGYMVVGLDAGGEHTLDTFDGATDPV 258

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
            +++G+EGKG+    +E    +  +     +++LN S AA V L  +  Q  
Sbjct: 259 VIVVGSEGKGISRLVRENCDVIMSIPTADWVESLNASVAAGVVLSEFARQRR 310


>gi|157826066|ref|YP_001493786.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
 gi|157800024|gb|ABV75278.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
          Length = 244

 Score =  238 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 80/239 (33%), Positives = 130/239 (54%), Gaps = 7/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+     LD +  L      + V  
Sbjct: 7   QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREI---LDTNKKLIGTRSYEIVNN 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             + K++G +  HQG+  +  P+ S     LD       + +LD + D  NIGAI+RSA 
Sbjct: 64  DILSKLLGNQ-THQGIVAKVRPIFSYNLENLDIKNQKCKIAILDQITDTQNIGAIIRSAA 122

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  K  SP+ES  +AK+A G LE I  I+++NL   +  +   GF  IGL+  
Sbjct: 123 AFDINAIILPKDNSPNESGGIAKAACGTLELISIIKVTNLRSCMNYLKKHGFWIIGLTGS 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      ++ +DK+AL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 183 AHDYFSDKLISDKMALVFGSEDKGIRRLIEETCDYLAKIPISKRVESLNVSNAASIIFH 241


>gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
 gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
          Length = 302

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 116/273 (42%), Gaps = 30/273 (10%)

Query: 31  KKMQSFNQKSRH--TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANL 87
           KK+ S  +  +     QPE   ++G+H V+  L      + +L         R+     L
Sbjct: 26  KKVVSRKESGQRWPADQPEASLVWGIHPVTELLRRRPGLVRKLYLAGGRDDGRVAAIVEL 85

Query: 88  P--HPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------------ 131
              H  P+     PP         E  HQG+A   AP    +L  +              
Sbjct: 86  AASHRIPLDRAGLPP------AAAELPHQGVAARVAPPSPLSLAELLQRLPALGPAPASS 139

Query: 132 -----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                  LL+VLD + DPHN+GA+LRSA AF  DG+I  K  S   S  + K+A+G    
Sbjct: 140 PAAGPPPLLLVLDSLQDPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAAL 199

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +   R +NL  AL  +   GF   G S ++   L +        L+LG E KG+RP  ++
Sbjct: 200 LDICRTTNLAGALGTLKKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKK 259

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +  + +   +++LNVS AA + L   +  
Sbjct: 260 HCDFLLAIPLAAGVESLNVSVAAGIMLAEIRRR 292


>gi|260589561|ref|ZP_05855474.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|331082988|ref|ZP_08332107.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540129|gb|EEX20698.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|330399725|gb|EGG79386.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 249

 Score =  238 bits (608), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R        H   +K V  + +D++  + 
Sbjct: 10  VEGRNAVLEAFRSGKSVDKLFVLEKCEDGPVRTILREAKKHDTMIKYVKKERLDQL-SET 68

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+   TA      ++ +            L++LD++ DPHN+GAI+R+A      G
Sbjct: 69  GKHQGVIAMTAAYNYAEVEDILAAAREKGEPPFLVLLDNIEDPHNLGAIIRTANLAGAHG 128

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A +A++++GAL + P  +++NL   ++ +   G   +       + + 
Sbjct: 129 VIIPKNRAVGLTATVARTSAGALNYTPVAKVTNLARTIENLKKEGIWFVCADMGGTQ-MY 187

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  I L++G EG G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 188 DLDLKGAIGLVIGNEGDGVSKLVREKCDFIASIPMQGNIDSLNASVAAGVLAYEIVRQR 246


>gi|296116988|ref|ZP_06835589.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976470|gb|EFG83247.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 306

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 104/244 (42%), Positives = 139/244 (56%), Gaps = 2/244 (0%)

Query: 37  NQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
            ++ R    P    +LYG H V AAL+NP R + QLL T  A A L+       P   + 
Sbjct: 60  AERGRAEVAPRGTCWLYGTHAVMAALSNPHRHLRQLLTTAEAQAALEERMGRALPIQPQR 119

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           V    ID I G++AVHQG+AL    L +P L D V     +++LD V DP NIGAILRSA
Sbjct: 120 VDRARIDSICGRDAVHQGIALLADLLDTPALEDIVERPGPVLLLDQVTDPRNIGAILRSA 179

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF    +I   R +P E+  LAK+ASGALE +P +R+ NL+  +  + S G  T+GL +
Sbjct: 180 AAFGAAAVIVQDRNAPEETGALAKAASGALEVVPLVRVVNLSRTIDALKSHGMWTVGLDA 239

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     +  ++AL+LGAEG GLR  T+E    +A L M G +++LNVSNAAAVALY
Sbjct: 240 GGGILDGASFRQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSGDMESLNVSNAAAVALY 299

Query: 275 ITQN 278
               
Sbjct: 300 EMSR 303


>gi|259502664|ref|ZP_05745566.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169309|gb|EEW53804.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 248

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 15/244 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTI 101
               F+ G H    AL      I ++        +A+A +   A       + TVP   +
Sbjct: 4   ENTDFIIGRHPAVMALKADQE-INKVFVQAGLKADAIAEIIKLAKQKRLV-ISTVPKTKL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D++      HQG+AL  A      +D +             ++LD + DPHN+G+I+R+A
Sbjct: 62  DQLTD-HQNHQGVALAVAAYHYADVDDLFANAARKNEDPFFLILDELEDPHNLGSIIRTA 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A    GII  +R +   ++V+AK+++GALEH+P  R++NL   ++++ + G    G   
Sbjct: 121 DAAGVHGIIIPRRRAVGLTSVVAKTSTGALEHVPVARVTNLVQTVKELKNRGVWLFGTDM 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +        +  +AL++G EGKG+    ++    M  + M G +++LN S AA + +Y
Sbjct: 181 KGR-DYRTWDAHGAVALVIGNEGKGISSLLKKNCDEMLTIPMVGHVQSLNASVAAGLLIY 239

Query: 275 ITQN 278
              N
Sbjct: 240 QGFN 243


>gi|217976553|ref|YP_002360700.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
           silvestris BL2]
 gi|217501929|gb|ACK49338.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
           silvestris BL2]
          Length = 293

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/244 (38%), Positives = 135/244 (55%), Gaps = 2/244 (0%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R  R  +        S   S  +   LYG H V  AL    RK+F + AT+ A  +L  +
Sbjct: 36  RPARAAEPPHKAATPSFRGSSADISVLYGFHAVREALRAGKRKMFDIYATEAAAQKLAPE 95

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVND 143
                    + V  + + + +G  AVHQG+ LE  P  +  + D    S +++VLD + D
Sbjct: 96  IAAA-GLTARLVAAEDLSRRLGPAAVHQGVMLEARPFEALDISDIAPESGVVLVLDQITD 154

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI R+A AF  D ++ T+R++P  + VLAK+ASG LEH+P I + NL  AL+ + 
Sbjct: 155 PHNVGAIARTAAAFRVDALVMTERHAPELTGVLAKAASGGLEHVPIIHVVNLARALRALK 214

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+  +GL S+ +  L     +  +ALILG EGKGLR  T+E    +A L MPG IK+L
Sbjct: 215 DQGYLRVGLDSEGESTLTDAPLSRPLALILGGEGKGLRRLTRENCDLVARLDMPGPIKSL 274

Query: 264 NVSN 267
           NVSN
Sbjct: 275 NVSN 278


>gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
 gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
          Length = 315

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 120/275 (43%), Gaps = 13/275 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQLLATK 75
           + K R  +   K+ Q     ++   +  +  + G + V  AL +     +  + Q +   
Sbjct: 41  HVKNRLANAKAKQTQRRTTAAKGRGRSSSELVVGRNPVFEALRDGVPATALYVQQFIDND 100

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----- 130
             +      A       +   P   +D++      HQGL L+  P      + +      
Sbjct: 101 ERVRDALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLPAAAYD 159

Query: 131 --NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G     P
Sbjct: 160 EGGEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTAARTP 219

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET 247
             R++NLT AL+     G   +GL++D +  + E    +  + +++G+EGKGL     ET
Sbjct: 220 VARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLSRLVGET 279

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + MPG  ++LN   AA + +Y   +  A+
Sbjct: 280 CDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 314


>gi|307729459|ref|YP_003906683.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1003]
 gi|307583994|gb|ADN57392.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia sp.
           CCGE1003]
          Length = 247

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +        R   +           +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASSVEDVYYDATRKDRRMTEFLHTAKEAGVRLIAADETRLWGLAR 65

Query: 107 KEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+      L     L+  LD +  S LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARAGDLPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G S ++ K L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTSGEATKSLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   +  +A+++GAEG+G+R  T++T   +  + M G +++LNVS A+ V L+      +
Sbjct: 185 ETELDGPVAIVMGAEGEGMRRLTRDTCDVVMQIPMAGTVESLNVSVASGVCLFEAVRQRS 244


>gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
 gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846701|gb|EDK23619.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
 gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 261

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 4/250 (1%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K++    +KSR   +     + G          P  +I +L  +++  A+   + N    
Sbjct: 11  KELLRLQKKSREREKEGVFIVEGPRMAEEI---PRERIVKLYVSESFQAKCVKEKN-DRF 66

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                V   T+   V      QG+      +     D +  +  ++VL+++ DP N+G I
Sbjct: 67  IQEAEVMSDTVFAHVSDTKTPQGILAVVRRMEYTAEDILGETPHVLVLENIQDPGNLGTI 126

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+A A    GI+ +K      +  + +S  GA+  IP+I   +L   + ++   G    
Sbjct: 127 FRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFRIPFIYTDDLKGTIDELKREGITVY 186

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
                 +   + E      A ++G EG GL  +T   A     + M G  ++LN + A+A
Sbjct: 187 AAHLKGENSYDMEDYKTACAFLIGNEGNGLTEETAACADRKILIPMEGGAESLNAAVASA 246

Query: 271 VALYITQNHF 280
           V ++      
Sbjct: 247 VLMFEAGRQR 256


>gi|332187397|ref|ZP_08389135.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
 gi|332012558|gb|EGI54625.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
          Length = 247

 Score =  238 bits (608), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 142/246 (57%), Gaps = 18/246 (7%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
            R ++  Q+ + + R          +G H V+AAL NP+R + ++  T+ ALA LD    
Sbjct: 3   RRGHRPSQASSNRPRF---------WGRHAVTAALANPNRTVRKIWGTREALAALD---- 49

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHV 141
           LP   P+       + ++V  +A HQGL  E  PL    L     +   + + L+VLD V
Sbjct: 50  LPPVVPITYADAADLGRLVPADAPHQGLVAEVDPLEDMWLGDLLHEGQDDQRPLVVLDQV 109

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+GAILRSA AF   GI+T  R++P ES  +A+SASGALE +P+IR+ NL  AL++
Sbjct: 110 TDPHNVGAILRSAAAFDALGIVTQDRHAPPESGTVARSASGALETVPWIRVVNLARALEE 169

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF  IGL+  + + L Q +   +I ++LGAEG+G+R  T+     +A L +   ++
Sbjct: 170 IAEAGFWRIGLTGHANQTLAQAMGTQRICIVLGAEGEGMRQNTEAHCDELAKLPISPKVE 229

Query: 262 ALNVSN 267
           +LNVSN
Sbjct: 230 SLNVSN 235


>gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9515]
          Length = 349

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 80/241 (33%), Positives = 129/241 (53%), Gaps = 14/241 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDK 103
           + +++G H+V A L N  R I ++  T    +   +   L         V+ V    + +
Sbjct: 109 DDWIWGKHSVFATL-NTERPINRIWCTSEIFSSEKFFLLLKDLKSKGVLVEEVSWSRLSQ 167

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +    AVHQG+AL+ A   + +LD +        N+ + + LD + DPHN+GAI+RSA A
Sbjct: 168 LTS-GAVHQGVALQLATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEA 226

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F C GII  +R S   +  +AK A+GALEHIP  R+ NL  A+ ++   GF  +GLS D 
Sbjct: 227 FDCKGIIIPQRRSAGLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDG 286

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYI 275
           + P+ +  +   I +++GAE KG+   TQ+    +  + + G   +LN S AAA+   Y+
Sbjct: 287 QIPISKFDQKAPIVVVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCYL 346

Query: 276 T 276
           +
Sbjct: 347 S 347


>gi|312144265|ref|YP_003995711.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
           'sapolanicus']
 gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium sp.
           'sapolanicus']
          Length = 246

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 12/239 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL    RKI ++   +N+ + +  D          P+  +  + + +    
Sbjct: 4   IEGRNAVYEALR-AGRKIHRIYIKENSSSEIIDDILEMAEKDNIPITRISNKKLSETARS 62

Query: 108 EAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+  E   L    +       D      L ++LD + DPHN GAI+R+A A   D
Sbjct: 63  HA-HQGIIAEADHLKEYNINDIINIKDEKPGDSLTIILDEIKDPHNFGAIIRTAYAAGAD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++   R +   + V+ K+A+GA EHIP +++SN+  A++ +    F  +G  +  ++  
Sbjct: 122 AVVYQDRRAVDITPVVLKAAAGAAEHIPLVKVSNINYAIKALKDAHFWVVGADAAGEQSH 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   +   AL++G+EG GLR   +E    +  + M G + +LN S AAAV +Y     
Sbjct: 182 FEADFSGSTALVIGSEGSGLRRLVRENCDFLVKIPMKGELGSLNASVAAAVIIYEIFRQ 240


>gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
 gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           A1055]
 gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
          Length = 254

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A]
 gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           NATL2A]
          Length = 416

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 18/289 (6%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           N   +K +   +  K+S  A   +   + + +      S+  S   +  ++G H+  AAL
Sbjct: 107 NRFERKSTNPAYRNKNSQGASSYKREENNEPLSYSESFSKTLS---DDLIWGRHSTEAAL 163

Query: 62  NNPSRKIFQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
               R I ++  T    +     +L  D        V+ V    + ++    AVHQG+ L
Sbjct: 164 V-GGRAIHRIWCTSELRSTPKFFQLLKDQK-ASGVLVEEVSWSRLGQLT-NGAVHQGIVL 220

Query: 117 ETAPL----LSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           + A      L   +DA +   +S LL+ LD + DP N+GAI+RSA A    G+I  +R S
Sbjct: 221 QIAASKTLDLKNLIDACKAFGDSSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRS 280

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              +  +AK A+GALEH+P  R+ NL  +L+K+   G+  +GL+ +    L +      +
Sbjct: 281 AGLTGSVAKVAAGALEHLPVARVVNLNRSLEKLKDEGYTVVGLAEEGSSTLSEIKFQGPL 340

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +++G+E KG+   T+     +  + + G+  +LN S A ++ LY    
Sbjct: 341 VVVVGSEDKGISLITRRLCDQLVRIPLKGVTTSLNASVATSIFLYEVAR 389


>gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           intracellulare ATCC 13950]
          Length = 310

 Score =  238 bits (607), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 126/270 (46%), Gaps = 12/270 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A +R NH   K+ QS +++       E   + G + V   L    P+  ++  L ++ A 
Sbjct: 41  AHMRPNHPAAKRAQSPSRRPARGKTDETETVLGRNPVLECLRAGVPATALYVALGSE-AD 99

Query: 79  ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----- 131
            RL    +        +  VP   +D++     +HQG+AL+  P      D +       
Sbjct: 100 ERLTESVSRAADLGIAILEVPRTDLDRMTNNH-LHQGIALQVPPYNYAHPDDLVEAATGS 158

Query: 132 -SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   +P  
Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVA 218

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  L      G + IGL +     L+     D I +++G+EGKGL    ++    
Sbjct: 219 RATNLTRTLTDWADRGLRVIGLDAGGDTTLDDLDGTDPIVVVVGSEGKGLSRLVRQNCDE 278

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M G  ++LN S AA V L       
Sbjct: 279 VVSIPMAGNAESLNASVAAGVVLAEISRQR 308


>gi|116493236|ref|YP_804971.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116103386|gb|ABJ68529.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 252

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 11/242 (4%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  F+ G H   A+L +     K+F     K+                ++ V    +D 
Sbjct: 8   QQPDFVIGRHPAMASLQSDHSINKVFIQEGLKSDGIGQIIAKAKKQGLVIQRVTKSKLDT 67

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+ L  A      LD +            +++LD + DPHN+G+ILR+A A
Sbjct: 68  L-SNGQNHQGVVLAVASFEYAELDDIFKLAKAREEEPFILILDGIEDPHNLGSILRTADA 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR +   ++ +AK+++GA+E +P +++SNL +A++++   G    G     
Sbjct: 127 AGVHGVIIPKRRAVGLTSTVAKTSAGAIERVPVVQVSNLVNAIKELKERGLWIFGTDMKG 186

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + LI+G EGKG+   T++    M  + M G I++LN S AA + +Y  
Sbjct: 187 -TDYRRWDAKGAVGLIIGNEGKGMARLTKDNVDEMLTIPMVGEIQSLNASVAAGLLIYQG 245

Query: 277 QN 278
            N
Sbjct: 246 YN 247


>gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens E str. JGS1987]
 gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens NCTC 8239]
 gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens C str. JGS1495]
 gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens SM101]
 gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens C str. JGS1495]
 gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens E str. JGS1987]
 gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens NCTC 8239]
          Length = 289

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 126/284 (44%), Gaps = 16/284 (5%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNN 63
            K   K   L       L R  R  ++  + N ++    + +     + G + V   L +
Sbjct: 2   TKSENKYKQLTRKQKYALEREQRAREEKYARNTRTFAEEEVKVREDLVEGRNAVIELLKS 61

Query: 64  PSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
             + I Q+       + ++ ++   A       VK V  + +D ++ +   HQG+  +  
Sbjct: 62  D-KTIEQIFIANGKMEGSINKILGLAK-EKKIVVKEVDRKKLD-LMSETKAHQGVIAQIT 118

Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           P    T++ +            +++LD + DPHN+G+I+R+A      GII  KR +   
Sbjct: 119 PFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGV 178

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  + K++ GA+EH+   +++N+ +A++++ +      G     ++   +        +I
Sbjct: 179 TGTVYKASVGAIEHMKIAKVTNINNAIEELKANNVWIYGADIAGEEYSYETNFKGACGII 238

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G+EG+G+   T++    +  + M G I +LN S A  + +Y  
Sbjct: 239 IGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEV 282


>gi|253579510|ref|ZP_04856779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849011|gb|EES76972.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 245

 Score =  238 bits (607), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 11/241 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   R            +  V  + +D++    
Sbjct: 5   IEGRNAVLEAFRSGKCVDKLFILDGCQDGPVRTIAREARKKDTIINYVAKERLDQLSETG 64

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+  + A     +++ +            + +LD++ DPHN+GAI+R+A      G
Sbjct: 65  A-HQGVIAQVAAYEYASVEDILAKAREKGEDPFIFILDNIEDPHNLGAIIRTANLAGAHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   ++ +AK+++GAL + P  +++NL   + ++   G   +      +  + 
Sbjct: 124 VIIPKRRAVGLTSTVAKTSAGALNYTPVAKVTNLGHTIDELKEQGMWFVCADMGGET-MY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  I +++G EG+G+    +E    +A + M G I +LN S AA V  Y       
Sbjct: 183 NLNLTGPIGVVIGNEGEGVSRLIREKCDFVASIPMKGDIDSLNASVAAGVLGYEIVRQRL 242

Query: 282 K 282
           +
Sbjct: 243 Q 243


>gi|172041345|ref|YP_001801059.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 317

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 135/283 (47%), Gaps = 20/283 (7%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKS-----RHTSQPENLFLYGVHTVSAALNN--PSRKIFQ 70
           +  A+ R  H+ +K+ ++  +++     R  +   N  + G + V   L+   P+  ++ 
Sbjct: 36  TPKAEDRVYHQAHKRKKAAQRRASGAHDRRDAFGGNELVVGRNPVVECLHANVPASALYV 95

Query: 71  LLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
              T N   RL    ++       V  V  Q +D++ G   +HQG+ L+  P     +  
Sbjct: 96  AEGTGN-DDRLSEAVHICSSRGISVLEVSRQELDRMTG-NGLHQGIGLQIPPYKYADVHD 153

Query: 129 V-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +           L++ LD++ DP N+GA++RS  AF   G++  +R S S +AV  ++++
Sbjct: 154 LIERAADSATPGLVVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSA 213

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G    +P  + +N+  AL++    G+Q +GL +  +  L+         +++G+EGKGL 
Sbjct: 214 GTAARLPVAKATNMVRALKQFQQNGYQVVGLDAGGEHTLDTYDGTTPTVVVVGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
               ETA ++  + M   +++LN S AA V L  +  Q    K
Sbjct: 274 RLVGETADTILSIPMADKVESLNASVAAGVVLSEFARQRRVGK 316


>gi|227903249|ref|ZP_04021054.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|227869054|gb|EEJ76475.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 250

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L    + KI ++      +   A   +  +      V++VP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALSKKKRLVVQSVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L  +      L       D       L++LD + DPHN+G+ILR+A A 
Sbjct: 66  VD-GGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPHNLGSILRTADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWFFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +     K  L++G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 VDYREWNAKGKTVLVIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|269124973|ref|YP_003298343.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
           curvata DSM 43183]
 gi|268309931|gb|ACY96305.1| RNA methyltransferase, TrmH family, group 3 [Thermomonospora
           curvata DSM 43183]
          Length = 306

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 118/249 (47%), Gaps = 9/249 (3%)

Query: 40  SRHTSQPE-NLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           +R  + P+    + G + V  AL    P + ++ +  T   +      A      P+   
Sbjct: 59  TRRANGPDAPELVVGRNPVVEALRAGVPGKALYVVSDTDERIREAVKIAG-DRGIPLLQA 117

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRS 153
               +D++    AVHQG+AL+  P      + +       L++  D + DP N+GAI+RS
Sbjct: 118 GRSELDRLTD-GAVHQGIALQVRPYRYADPEELLQRGTPPLIVACDGITDPRNLGAIVRS 176

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  +G++  +R S   +A   KS++G L ++P  + +NLT  L+     G    GL 
Sbjct: 177 AAAFGANGVVIPERRSAGVTAGTWKSSAGTLANLPVAQTTNLTRQLKAYQQAGCFVAGLD 236

Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S     +   EI +  + L++G+EGKGL     ET   +A + MPG  ++LN   AA +A
Sbjct: 237 SRGAITVADLEIADGPLVLVVGSEGKGLSRLVAETCDMLATIPMPGRAESLNAGVAAGIA 296

Query: 273 LYITQNHFA 281
           LY      A
Sbjct: 297 LYEIARRRA 305


>gi|28198726|ref|NP_779040.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|71897946|ref|ZP_00680151.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|182681419|ref|YP_001829579.1| RNA methyltransferase [Xylella fastidiosa M23]
 gi|52783310|sp|Q87D65|RLMB_XYLFT RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|28056817|gb|AAO28689.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|71732190|gb|EAO34245.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|182631529|gb|ACB92305.1| RNA methyltransferase, TrmH family, group 3 [Xylella fastidiosa
           M23]
 gi|307579865|gb|ADN63834.1| RNA methyltransferase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 249

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ G++ V +++ N +  + ++L    +KN+      +        V+ V  Q +D
Sbjct: 3   KKNQWIVGINAVVSSIENDAEHVREVLVEAASKNSRLLDIEENARRKGIEVRRVTTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A +       L   +DA     LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S   +A + K++SGA + +P I + NL  +L+++        GL+ +
Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  L        +AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+ 
Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|332530183|ref|ZP_08406131.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332040375|gb|EGI76753.1| RNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 249

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 111/239 (46%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQ--TIDKIVG 106
            LYG H V   L      I  +        AR+           V+ +      + K+ G
Sbjct: 10  VLYGFHAVGVRLKTAPTSILDIYYDASRRDARMRQFIARAQEAGVRLIEADGLRLAKLAG 69

Query: 107 KEAVHQGLALETAPLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+A    P+         LD +    LL+VLD V DPHN+GA LR A       
Sbjct: 70  NHG-HQGVAARVQPIELARSLDDLLDDLVGPPLLLVLDGVTDPHNLGACLRVADGAGAHA 128

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K ++   +A +AK ASGA E +PY  ++NL   L ++       IG S D+ + L 
Sbjct: 129 VIAPKDHAVGLNATVAKVASGAAETVPYFMVTNLARTLGELKERNIWCIGTSDDAPQTLY 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q       AL+LGAEG+G+R  T++T  ++  + M G +++LNVS A+ V LY      
Sbjct: 189 QSDLKGPTALVLGAEGEGMRQLTRKTCDALVSIPMKGGVESLNVSVASGVCLYEALRQR 247


>gi|71275861|ref|ZP_00652145.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
 gi|71899357|ref|ZP_00681517.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
 gi|71163439|gb|EAO13157.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Dixon]
 gi|71730871|gb|EAO32942.1| RNA methyltransferase TrmH, group 3 [Xylella fastidiosa Ann-1]
          Length = 249

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ G++ V +++ N +  + ++L   A+KN+      +        V+ V  Q +D
Sbjct: 3   KKNQWIVGINAVVSSIENDAEHVREVLLEAASKNSRLLDIEENARRKGIEVRRVTTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A +       L   +DA     LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I  K  S   +A + K++SGA + +P I + NL  +L+++        GL+ +
Sbjct: 122 AAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  L        +AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+ 
Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|312898322|ref|ZP_07757712.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
           micronuciformis F0359]
 gi|310620241|gb|EFQ03811.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera
           micronuciformis F0359]
          Length = 247

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 16/249 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102
           +   + G ++V+ AL    R + ++  T       LAR+   A      PV+ V  + ++
Sbjct: 2   DTSIIAGRNSVTEALK-AGRSVTKIYMTAKKEAPPLARIRTLAK-ERKIPVEFVDNRAME 59

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++      HQ +    A +    LD V            L++ D + D HN+GAI+R+A 
Sbjct: 60  RLA-PGIRHQDVVALAAAVDFADLDDVLAKVREQGEMPFLVLADGIEDVHNLGAIIRTAE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                 I+  +R+S   +  +AK+++GA+E++P +RI N+T  L+++   GF  +G    
Sbjct: 119 CAGVHAILVPQRHSAPINETVAKTSAGAVEYMPVVRIGNVTTTLKQLKKQGFWVLGADMV 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++       +  + L++G+EGKG+    ++    +  + M G I +LN S AAA+ +Y 
Sbjct: 179 GEENYYSLSADMPLVLVIGSEGKGISRLVKDNCDVLVRIPMFGRINSLNASVAAALLMYE 238

Query: 276 --TQNHFAK 282
              + H  K
Sbjct: 239 VARKRHREK 247


>gi|300115389|ref|YP_003761964.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299541326|gb|ADJ29643.1| RNA methyltransferase, TrmH family, group 3 [Nitrosococcus watsonii
           C-113]
          Length = 284

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLP--HPFPVKTVPPQTIDKIVGKE 108
           YG+H V AAL  P+ ++  L   +  + + L   A L        + V  + +D++V   
Sbjct: 31  YGLHAVRAALEQPALQVMALWLDQTRMDQSLQKLAKLAFDRGLKAQPVKREELDELV-PG 89

Query: 109 AVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           A HQG+    +         L   LD +    LL++LD V DPHN+GA LR+A A    G
Sbjct: 90  ARHQGVVARCSVQSALTEEGLLAFLDQLGTPPLLLLLDGVQDPHNLGACLRTAEAAGVHG 149

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPL 220
           ++  K  +   +AV  K ASGA E +P +R++NL   ++ +   G   +G         L
Sbjct: 150 VVVPKDRAAGLTAVARKVASGAAERVPLVRVTNLARVMRALRERGLWLVGAVVGGTHATL 209

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      + L+LGAE +GLR  TQE    +  + M G + +LNVS AA V L+  Q   
Sbjct: 210 YETDLQGPLGLVLGAEDRGLRRLTQEHCDCLVQIPMQGAVGSLNVSVAAGVCLFEAQRQR 269

Query: 281 A 281
            
Sbjct: 270 G 270


>gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens B str. ATCC 3626]
 gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens ATCC 13124]
 gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           perfringens B str. ATCC 3626]
          Length = 289

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 126/284 (44%), Gaps = 16/284 (5%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNN 63
            K   K   L       L R  R  ++  + N ++    + +     + G + V   L +
Sbjct: 2   TKSENKYKQLTRKQKYALEREQRAREEKYARNTRTFAEEEVKVREDLVEGRNAVIELLKS 61

Query: 64  PSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
             + I Q+       + ++ ++   A       VK V  + +D ++ +   HQG+  +  
Sbjct: 62  D-KTIEQIFIANGKMEGSINKILGLAK-EKKIVVKEVDRKKLD-LMSETKAHQGVIAQIT 118

Query: 120 PLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           P    T++ +            +++LD + DPHN+G+I+R+A      GII  KR +   
Sbjct: 119 PFKYSTVEDILDLAKSKNEDPFIVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGV 178

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  + K++ GA+EH+   +++N+ +A++++ +      G     ++   +        +I
Sbjct: 179 TGTVYKASVGAIEHMKIAKVTNINNAIEELKANNLWIYGADIAGEEYSYETNFKGACGII 238

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G+EG+G+   T++    +  + M G I +LN S A  + +Y  
Sbjct: 239 IGSEGRGMSNLTKKKCDKLVKIPMVGKINSLNASVAGGIMMYEV 282


>gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
 gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
          Length = 307

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 15/280 (5%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQ 70
            +  H      N +  +  +    KSR  S  E   + G + V  AL +     +  + Q
Sbjct: 30  ARKGHVKNRLANAKAKQTQRRTAAKSRGKSSSE--LVVGRNPVFEALRDGVPATALYVQQ 87

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
            +     +      A       +   P   +D++      HQGL L+  P      + + 
Sbjct: 88  FIDNDERVRDALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLP 146

Query: 131 -------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                  +  L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G 
Sbjct: 147 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 206

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242
               P  R++NLT AL+     G   +GL++D +  + E    +  + +++G+EGKGL  
Sbjct: 207 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLSR 266

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              ET      + MPG  ++LN   AA + +Y   +  A+
Sbjct: 267 LVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 306


>gi|16125488|ref|NP_420052.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
 gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
          Length = 278

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/258 (32%), Positives = 137/258 (53%), Gaps = 10/258 (3%)

Query: 17  DSHYAKLRRNH-----RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQ 70
            SH  +  R       RD++                  +++G H V AAL NP R    +
Sbjct: 2   SSHSERNDRKRPSAQGRDFRSKPRKQNDFSRGQGDAKDWIWGTHAVEAALANPRRPAPKR 61

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LLAT +   RL    +L     ++ +  Q I K + + AVHQGLAL+       T+  + 
Sbjct: 62  LLATPDRAKRLA--PHLQKLTCLQVMEGQEIAKQLPQGAVHQGLALKIDEPEPLTIAELG 119

Query: 131 NSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++LD + DP NIGAI RSA AF   G+I   R++P+ S VLAK+A GA++  P
Sbjct: 120 TPAKGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPALSGVLAKTAVGAVDKAP 179

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           Y R+ NL+ AL+++   G++ + L+ ++++ L+  + +    L+LG+EG+G+R    E  
Sbjct: 180 YARVVNLSRALEELADLGWRAVALAGEAEQSLDAVLDSQPTVLVLGSEGEGVRRLVAEHC 239

Query: 249 TSMAHLHMPGIIKALNVS 266
            ++  + MPG  ++LNVS
Sbjct: 240 DALGKIPMPGGFESLNVS 257


>gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
 gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Kruger B]
 gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Vollum]
 gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
           Australia 94]
 gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames]
 gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne]
          Length = 254

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLKEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|170747977|ref|YP_001754237.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
 gi|170654499|gb|ACB23554.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 281

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/240 (42%), Positives = 146/240 (60%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + R         LYG H V  AL N  R + +LLAT+NA ARL+ +         + V P
Sbjct: 39  RPREEGGDGPTVLYGWHPVVQALGNAQRGLHRLLATENAAARLEAEFGGAVRITPELVRP 98

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             I +++G +AVHQGL LE  PL +P LD +    LL+ LD + DPHN+GAI+R+A AF 
Sbjct: 99  SDIGRLLGPDAVHQGLYLEAEPLPAPGLDDLPADALLLALDQITDPHNVGAIVRTAAAFG 158

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GI+TT R++P  + VLAKSASG LEH+P++ + NL +AL ++   GF  +GL SD+ +
Sbjct: 159 VAGIVTTARHAPGATGVLAKSASGGLEHVPFVTVRNLAEALIELGERGFTRVGLDSDAPE 218

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L+       + ++LGAEGKGLR +T+     +A +   G I++LNVSNAAA+ LY    
Sbjct: 219 SLDALTVARPLVIVLGAEGKGLRERTRGCCDVLARIPFSGAIRSLNVSNAAAITLYALGR 278


>gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 253

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  +   K+       D        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALKSGA-KITEVYISTSAKDKETAKIIDLCRQSGVVVKFVDKSKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D +            L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       ++  KP+
Sbjct: 122 GIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADANGSKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCVVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|319901728|ref|YP_004161456.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
           P 36-108]
 gi|319416759|gb|ADV43870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides helcogenes
           P 36-108]
          Length = 246

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG+    + +       L+P L     + L ++LD + D  N GAI R+   
Sbjct: 63  MTRK--NHQGVIAFVSAVTYQKTEDLTPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S S +A   K+++GAL  +P  R  NL + LQ + + GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVSVNADAVKTSAGALHTLPVCREQNLKETLQFLKNSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA V +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGVLIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|167765723|ref|ZP_02437776.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
 gi|167712596|gb|EDS23175.1| hypothetical protein CLOSS21_00211 [Clostridium sp. SS2/1]
 gi|291559859|emb|CBL38659.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
           SSC/2]
          Length = 246

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 12/243 (4%)

Query: 47  ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +   + G + V  AL    P  KIF L   ++   R            +K V  + ++++
Sbjct: 4   KEDLIAGRNAVIEALRAKKPIDKIFVLDGCQDGPIRTIVREAKKTDAILKFVDKERLNQL 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A     T++ +             ++LD + DPHN+GAI+R+A   
Sbjct: 64  TNEH--HQGVVAIVAAYEYGTIEDLFKRAEEKGEDPFFILLDGIEDPHNLGAIIRTANLA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   +  +AK+++GA+ + P ++++N+   + ++   G        D +
Sbjct: 122 GAHGVIIPKHRAVGITPTVAKTSAGAINYTPVVKVTNIGKTMDELKERGMWFACADMDGE 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               Q      I L++G EG G+    +E    ++ + M G I +LN S AA V  +   
Sbjct: 182 VIYRQ-NLTGSIGLVIGNEGSGVSRLVKEKCDFISSIPMKGDIDSLNASVAAGVLAFEVV 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|295688896|ref|YP_003592589.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
           ATCC 21756]
 gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
           ATCC 21756]
          Length = 276

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 138/258 (53%), Gaps = 10/258 (3%)

Query: 17  DSHYAKLRRNH-----RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQ 70
            SH  +  R       RD++                  +++G H V AAL+NP R    +
Sbjct: 2   SSHSERNDRKRPSAQGRDFRSKPRKPNDFSKGQGDAKDWIWGTHAVEAALSNPHRPAPKR 61

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LLAT +   RL     L     ++ +  Q I K + + AVHQGLAL+     S ++  + 
Sbjct: 62  LLATPDRAKRLA--PALQKLSCLQVMEGQEIAKHLPQGAVHQGLALKIDEPESLSIAELA 119

Query: 131 --NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             N   L++LD + DP NIGAI RSA AF   G+I   R++P  S VLAK+A GA++ +P
Sbjct: 120 ASNDGFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLAKTAVGAVDKVP 179

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           Y R+ NL+ AL+++   G++ + L+ ++++ L++ +      L+LG+EG+G+R    E  
Sbjct: 180 YARVVNLSRALEELADLGWRAVALAGEAEQTLDEVLDGAPTVLVLGSEGEGVRRLVAEHC 239

Query: 249 TSMAHLHMPGIIKALNVS 266
             +  + MPG  ++LNVS
Sbjct: 240 DVLGKIPMPGGFESLNVS 257


>gi|170730155|ref|YP_001775588.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
 gi|167964948|gb|ACA11958.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
          Length = 249

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ G++ V +++ N +  + ++L    +KN+      +        V+ V  Q +D
Sbjct: 3   KKNQWIVGINAVVSSIENDAEHVREVLVEAASKNSRLLDIEENARRKGIEVRRVTTQALD 62

Query: 103 KIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A +       L   +DA     LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGGVRHQGVAARYAAVRLWEEHDLKDLVDAAGGQALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     +I +K  S   +A + K++SGA + +P I + NL  +L+++        GL+ +
Sbjct: 122 AAGVTAVIISKDKSVGINATVRKTSSGAADRLPVIAVVNLARSLRELQKQDVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  L        +AL+LG E  GLR  T+E    +A + MPG +++LNVS AA V L+ 
Sbjct: 182 VETSLYALDLRGNVALVLGGEADGLRRLTREHCDVLARIPMPGEVESLNVSVAAGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|197294706|ref|YP_001799247.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
 gi|171854033|emb|CAM12006.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma australiense]
          Length = 233

 Score =  237 bits (605), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 5/231 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +F+YG +T+  A+    RKI+QL    N               P + V  + +  +V K+
Sbjct: 1   MFIYGKNTIKEAIK-AKRKIYQLYLDANFKDNSFISFLKLSNQPYQLVDKKKLFDLV-KQ 58

Query: 109 AVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
             HQG+  +        LD+       Q  ++LD ++DPHN+GAILR+  A   DG+I +
Sbjct: 59  KNHQGVVAQVESYQFYDLDSFLSFEKKQRFLILDAIHDPHNLGAILRTVEACGFDGVIMS 118

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K++    +A ++K A GALE++    +SNL   + K+       IG  S++ + L +   
Sbjct: 119 KKHQVPLNATVSKIACGALEYVKVFLVSNLHQTILKLQKQQVLIIGTDSNATQTLTKIPC 178

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           N  +A+I+G EG G+R   ++    +  + M G I +LNVS A+A+ +Y T
Sbjct: 179 NQSLAIIVGNEGDGIRYLLKQKCDLLVKIPMKGKINSLNVSVASALMMYAT 229


>gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
 gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
          Length = 265

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 121/272 (44%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S    A+
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHESEV--AL 113

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + + L+ LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 114 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPV 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+  +    + 
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVSQEILAKSD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           papyrosolvens DSM 2782]
          Length = 265

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 27/284 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I   ++  +  +K  H  K R                         F+ G+  V+ A
Sbjct: 1   MNYIQSSQNSTLKEIKALHLKKNR-------------------DSQGLYFVEGIRFVNDA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP-----VKTVPPQTIDKIVGKEAVHQGLA 115
           ++N   ++   +   + L  L+  + L          +  VP + + K V      QG+ 
Sbjct: 42  IDNG--QVISKVIVSDKLEGLNGGSELIEKVKGVCSDISLVP-EKLFKEVSDTQTPQGIL 98

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                      + +     +++LD + DP N G I+R+A A     ++ +K      S  
Sbjct: 99  AVLEKNQFDFQEVIEKGNSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPK 158

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + +S  G++ H+P     N+T+ +Q +   G++ I      K    QE    + A+I+G 
Sbjct: 159 VLRSTMGSVFHVPIFEGLNITETIQLLKQKGYKVIASHLSGKNNYFQEDLTGRSAIIVGN 218

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E  G+  +T   A S+  + MPG  ++LN S AA++ +Y     
Sbjct: 219 EANGISDETANMADSLVKIPMPGKAESLNASVAASIMIYEIVRQ 262


>gi|58336688|ref|YP_193273.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|58254005|gb|AAV42242.1| tRNA-rRNA methyltransferase [Lactobacillus acidophilus NCFM]
          Length = 250

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 116/241 (48%), Gaps = 13/241 (5%)

Query: 49  LFLYGVHTVSAALN-NPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F++G H     L    + KI ++      +   A   +  +      V++VP   +D++
Sbjct: 6   DFVFGRHAGLDYLKTQNADKINKVFLQHGIQEDFANQVYALSKKKRLVVQSVPKNKLDRL 65

Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L  +      L       D       L++LD + DPHN+G+ILR+A A 
Sbjct: 66  VD-GGNHQGLVLAISSFDYADLGKMLDKFDEDGKEPFLLMLDSIEDPHNLGSILRTADAT 124

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             DG+I  KR++   ++V+AK+++GA++++P  R++NL    +++   G+   G    + 
Sbjct: 125 GVDGVIIPKRHATGLTSVVAKTSTGAIDYVPVARVNNLVQTTKELKKRGYWFFGTDM-AG 183

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +     K  LI+G EGKG+ P  ++       L M G +++LN S A  V LY   
Sbjct: 184 VDYREWNAKGKTVLIIGNEGKGIAPLLKKQMDQTITLPMIGHVQSLNASVATGVLLYQAY 243

Query: 278 N 278
           N
Sbjct: 244 N 244


>gi|227529489|ref|ZP_03959538.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350574|gb|EEJ40865.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus vaginalis
           ATCC 49540]
          Length = 248

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 11/240 (4%)

Query: 48  NLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           N F+ G H    AL +     K+F     K+                +  VP   +D++ 
Sbjct: 6   NDFIIGRHPAVMALKSDQEINKVFIQSGLKSDAISQIIKLAKEKRLVISNVPKTKLDQM- 64

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                HQG+AL  A     T+D +             ++LD + DPHN+G+I+R+A A  
Sbjct: 65  SDHQNHQGVALAVAAYHYATIDDLFENAAKHDEDPFFLILDELEDPHNLGSIIRTADAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  +R +   ++V+AK+++GA+EH+P  R++NL    Q++   G    G       
Sbjct: 125 VHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAQELKDRGVWLFGTDMKG-T 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +      +AL++G EGKG+    ++    M  + M G +++LN S AA++ +Y   N
Sbjct: 184 DYRRWNAKGAVALVIGNEGKGISSLLKKNCDEMLTIPMIGHVQSLNASVAASLLIYQGFN 243


>gi|309777273|ref|ZP_07672235.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308914953|gb|EFP60731.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 237

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 109/234 (46%), Gaps = 11/234 (4%)

Query: 54  VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
            + V   L    + I ++L  +        +       PVK +  + +D+++     HQG
Sbjct: 5   KNVVKQLLQ-DGKTIHEVLIQEGIRDTALENEIRKKQIPVKVLGRKKMDQLL--NGNHQG 61

Query: 114 LALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +A       +  L+ +  +       LL++LD + DPHN+GAILR+      DG+I  K 
Sbjct: 62  IAASIDDYKTWELEELLEAIPQGKQPLLVMLDGLEDPHNLGAILRTCDCIGADGVIIGKH 121

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   +  +AK ++GA++ +    ++NL  A++ +   G+  +G   ++ +   +   + 
Sbjct: 122 RNVRLTPTVAKVSTGAIDTVKVSVVTNLAQAIKYLKKQGYWVVGTDFENSRDYREGQYDV 181

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279
            + L++G+EG G+    ++       L M G + +LN S AA + LY    Q H
Sbjct: 182 PLVLVIGSEGFGISSLVKKNCDYCVRLPMEGSVSSLNASVAAGILLYQIHAQRH 235


>gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 253

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  R      +        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALRSGA-KITEVYISNSAKDRETAQIINLCKQSGIVVKFVDKSKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D +         +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAREFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       +   KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFATDASGPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
          Length = 254

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKTG--IVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|198274689|ref|ZP_03207221.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
 gi|198272136|gb|EDY96405.1| hypothetical protein BACPLE_00845 [Bacteroides plebeius DSM 17135]
          Length = 249

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 15/249 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTID 102
            +N  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I+
Sbjct: 3   EKNEMIFGVRAVIEAIQAGKE-IDKVLIKKDIQSDLSKELFAVLKDTFIPVQRVPVERIN 61

Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  K   HQG+    +P+         P L     + LL++LD + D  N GAI R+  
Sbjct: 62  RITKK--NHQGVVAFISPITYQRTEDIVPFLFEQGKNPLLILLDGLTDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  IP  R +NLT+ ++ +   GF+ +  +  
Sbjct: 120 CAGVDAIIIPSKNSVSVNADAIKTSAGALHTIPVCRENNLTNTIKFLKDSGFKIVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +        +I+GAE  G+             + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKADYQGPTCIIMGAEDTGVPYDHLALCDEWIKIPLFGNIESLNVSVAAGILIYE 239

Query: 276 T--QNHFAK 282
              Q  F +
Sbjct: 240 AVKQRGFGE 248


>gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 254

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|169350897|ref|ZP_02867835.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
 gi|169292483|gb|EDS74616.1| hypothetical protein CLOSPI_01671 [Clostridium spiroforme DSM 1552]
          Length = 244

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 10/236 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++YG +T+  AL    + I+ +    +    R+                 + I K+    
Sbjct: 7   YIYGKNTILEALK-GEKSIYTVYIQDSIKDNRIIELCKKKKIRIKIIDKSEFIKKL--GN 63

Query: 109 AVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+  E       ++D +  S       LL++LD + DPHN+GAILR+  A   DG+
Sbjct: 64  VRHQGVMAEVEEYRYYSVDEILASIPSGKMPLLLMLDGLEDPHNLGAILRTCDAIGVDGV 123

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  +AK ++GA++H+   +++NLT  L+ +    F  +G   D+ +   Q
Sbjct: 124 IIGKNRSVGLNGTVAKVSTGAIDHVKVAQVTNLTRTLEDLKKHSFWVVGCDLDNAQDYRQ 183

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              N  + +++G+EG G+    ++T      L M G + +LN S A AV LY   N
Sbjct: 184 IDYNMPLVIVIGSEGFGISRLVKKTCDFNVVLPMMGHVTSLNASVATAVILYQVYN 239


>gi|56696046|ref|YP_166400.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56677783|gb|AAV94449.1| RNA methyltransferase, TrmH family, group 3 [Ruegeria pomeroyi
           DSS-3]
          Length = 257

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/249 (37%), Positives = 142/249 (57%), Gaps = 7/249 (2%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  S  E ++L+G+H V  AL NP R+  +L+ T NA  +L  +A        +  
Sbjct: 10  KEQAKKASAAETVWLFGLHAVRDALMNPKREKLRLIVTLNAREKLA-EAIDAAGIEPELA 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRS 153
             +     +   +VHQG ALE  PL   +L  V     +  +++LD V DPHN+GAILRS
Sbjct: 69  DARRFSAPIDPGSVHQGAALEVKPLNWGSLAEVAIGAENPRVILLDRVTDPHNVGAILRS 128

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A       +I T+ +S  E+  LAK+ASGALE  PY+R+ NL DA+ ++   G+  +GL 
Sbjct: 129 AEVLGASAVIGTRHHSAPETGALAKTASGALERQPYLRMRNLADAITELQGMGYLVLGLD 188

Query: 214 SDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            ++ + +E  +       +AL+LGAEG GLR KT+ET   +  +   G   +LNVSNAAA
Sbjct: 189 GEASETIEAALAGQTDRPVALVLGAEGPGLRQKTKETVDKLVKIDAAGGFGSLNVSNAAA 248

Query: 271 VALYITQNH 279
           +ALY ++ H
Sbjct: 249 IALYASKAH 257


>gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
 gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
          Length = 265

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSIQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15]
          Length = 280

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 8/245 (3%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPP 98
           +H  + +  +LYG H+V AAL +  RK+  L    +   RL    +A      P+     
Sbjct: 13  KHQQEDQLEWLYGTHSVLAALRHKRRKLVGLHLKDSGQGRLQALVEAAKKSGVPIHYEAS 72

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRS 153
           +     +G E+VHQG+AL+  PL       +         L+ VLD V DPHN+GAI+R+
Sbjct: 73  RWFSDNLG-ESVHQGVALQCGPLSLLDEAELPPPNSGKPNLVFVLDGVEDPHNLGAIVRT 131

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F    +   K  + + S V AK++ GALE    +R++NL   L++    G+  +GL 
Sbjct: 132 LGFFGVSAVAIPKDRAAALSPVAAKASVGALEWFSVVRVTNLHRFLERQKKRGYWVVGLD 191

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             S+ PL Q   +  + ++LGAEG GLRP T+ T   +  +     +++LNVSNAAAV  
Sbjct: 192 GASRNPLRQLEWDRPLMVVLGAEGSGLRPLTKRTCDWLVSIPGTPEVESLNVSNAAAVTC 251

Query: 274 YITQN 278
           Y  +N
Sbjct: 252 YHLRN 256


>gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
          Length = 442

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 13/248 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPP 98
           T    N  ++G+H   A L +  R I ++  T     R  +   L         V+ V  
Sbjct: 145 TPPEHNDLVWGLHASQAILES-ERPIHRIWCTPELRFRSRFLQLLREAKSSGVLVEEVTW 203

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
             + ++ G  AVHQG+ L+TA   +  L+ +         + LLM +D + DPHN+GAI+
Sbjct: 204 ARLAQLCG-GAVHQGIVLQTAAAQTHDLETLIDSCAGLGEAPLLMAVDGLTDPHNLGAIV 262

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A    G++  +R S   +  +AK A+GALEH+P  R+ NL  +L+++   G++ +G
Sbjct: 263 RSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLERLKDAGYRVVG 322

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L+ +    L +   +  + ++ G+EG+GL   T+     +  + + G+  +LN S A A+
Sbjct: 323 LAEEGSATLAEADLDGPLVVVTGSEGQGLSMLTRRHCDQLVRIPLRGVTPSLNASVATAL 382

Query: 272 ALYITQNH 279
            LY     
Sbjct: 383 LLYEVARR 390


>gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 317

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/294 (24%), Positives = 137/294 (46%), Gaps = 28/294 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++  K  H AKL R  RD           RH  +   + + G + V   L
Sbjct: 35  KGPTPKAEDRVYHAK--HKAKLHRQRRD---------SGRHEKETAEMVV-GRNPVIECL 82

Query: 62  NN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +   P+  ++    T++   RL     +      P+  V    +D++ G   +HQG+ L+
Sbjct: 83  HAKVPATNLYIAQGTRS-DERLAEAVAIANARNLPILEVQRHVMDQMTG-NGMHQGIGLQ 140

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +  +       +   + ++LD++ DP N+GA++RS  AF  DG+I  +R S 
Sbjct: 141 IPPYKYADVHDLIAEAAKKQEPGMFVILDNITDPRNLGAVIRSVAAFGGDGVIIPERRSA 200

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKI 229
           S +AV  ++++G    +P  R +N+T  +Q+    G+Q +GL +  +  L+      D +
Sbjct: 201 SVTAVAWRTSAGTAARLPVARETNMTRTVQEFQKNGYQVVGLDAGGEHTLDTYKGGKDPV 260

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
            +++G+EGKG+    +E    +  + M   +++LN S AA   L  +  Q   A
Sbjct: 261 VIVIGSEGKGISRLVRENCDVIMSIPMTSWVESLNASVAAGAVLSEFARQRRVA 314


>gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
           17836]
 gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
           17836]
          Length = 320

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 121/263 (46%), Gaps = 12/263 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANL 87
           ++  +  + +R        ++YG + V  AL    P+  I+    T+ +   R     ++
Sbjct: 59  QERSAGRRPARKDPDATVEWVYGRNPVVEALRAGVPASAIYVAEGTERDPRLREALLLSV 118

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140
                +  VP Q +D++     VHQGLA++  P      D +           L++ LD 
Sbjct: 119 ERGVALLEVPRQELDRLTS-NGVHQGLAIQIPPYEYAHPDDLLRAAYDADQVPLIVALDG 177

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+GAI RSA AF   G++  +R + S SA   K+++GA   IP  R +NL  AL+
Sbjct: 178 VTDPRNLGAITRSAAAFGAHGVLVPERRAASVSASAWKTSAGAAARIPVARATNLNRALK 237

Query: 201 KMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                G   IGL  D +  L + +   D I L++G+EGKGL    +E    +  + M   
Sbjct: 238 SYKDAGLFVIGLDMDGEVELPDLQAATDPIVLVVGSEGKGLARLVRENCDLIVSIPMTSA 297

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
            ++LN   A  VALY       +
Sbjct: 298 TESLNAGIATGVALYEISRRRTQ 320


>gi|218905788|ref|YP_002453622.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
 gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
 gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
 gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
 gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
 gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
 gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 265

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|229825690|ref|ZP_04451759.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
           49176]
 gi|229790253|gb|EEP26367.1| hypothetical protein GCWU000182_01053 [Abiotrophia defectiva ATCC
           49176]
          Length = 259

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 13/247 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPH--PFPVKTVPPQT 100
           ++ E+L +YG + V  A  +  + I +L   +  A   L             +  V    
Sbjct: 12  NEEESLVIYGRNAVLEAFRSG-KTIDRLYVQEGVADGTLQSILRTAKKTDAVINFVNKDR 70

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           ++K    +  HQG+    A      ++ +            ++VLD + DPHN+GAI+R+
Sbjct: 71  LNKYAEGDK-HQGVVAMAAAYNYAEVEDILNAAKEKEEPPFIIVLDDIEDPHNLGAIIRT 129

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A      G+I  KR++   +A +A++++GA+ + P  +++N++  ++++   G       
Sbjct: 130 ANQAGAHGVIIPKRHAVGLTATVARTSAGAINYTPVAKVTNISRTIEELKEKGIWFACAD 189

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  +        I L++G+EG G+    +E    +  + M G I +LN S AA V  
Sbjct: 190 MSGE-LMYNCNLTGAIGLVIGSEGSGVSRLVKEKCDFVVKIPMFGQIDSLNASVAAGVLS 248

Query: 274 YITQNHF 280
           Y      
Sbjct: 249 YEIVRQR 255


>gi|254428391|ref|ZP_05042098.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
 gi|196194560|gb|EDX89519.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax sp. DG881]
          Length = 249

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 16/243 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDKIVG 106
           G H V A L +    + +L      + R D        A       V+    + ++K  G
Sbjct: 9   GFHAVEALLRHRPEAVLELFVQDTRVDRDDPRLAAMIQAAKDFGIAVQRARREVLEKHAG 68

Query: 107 KEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  HQG+     P            LD    S LL++L++V DPHN+GA LRSA A   
Sbjct: 69  PQ--HQGIVARARPRRPADESALLQWLDGKPASPLLLILENVTDPHNLGACLRSADAAGV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK- 218
             +I  +R +   + V  ++A GA E + Y  I NL   L ++   G   +G + + +  
Sbjct: 127 QAVIVPRRNAAGLTPVACRTAVGAAESLVYYEIGNLASLLDQLRDRGVWVVGTALEERSE 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L      + +A+++GAEG GL+  T++    +  + M G +++LNVS A  V L+  + 
Sbjct: 187 SLFTFQPPESLAIVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRA 246

Query: 279 HFA 281
             +
Sbjct: 247 QRS 249


>gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
 gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
          Length = 265

 Score =  236 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  +      +  VP + I KI+ +    QG+        S    A+
Sbjct: 60  ELIVSDQTDLPKDWTVD---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHESEV--AL 113

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + + L+ LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 114 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPV 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+  +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVSQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
 gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
          Length = 254

 Score =  236 bits (603), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+             A+
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + + L+ LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 103 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEVLAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|291294519|ref|YP_003505917.1| RNA methyltransferase TrmH family, group 3 [Meiothermus ruber DSM
           1279]
 gi|290469478|gb|ADD26897.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus ruber DSM
           1279]
          Length = 238

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 11/235 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG + V  AL     ++ Q+   +   A L  + +       +TVP   +D++V + 
Sbjct: 1   MLIYGRNPVLEALREG--RVEQVWVARGVEAWLLKELD-KLGASYQTVPRIQLDQMV-RT 56

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQGL  E   L    L+A            LL+VLD + DP N GAI+RSA A    G
Sbjct: 57  TQHQGLVAEITELAYADLEAPFRLAKERGERVLLVVLDGITDPRNYGAIIRSAFALGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++T +R S   SA++ K+++G    IP +++ N+   L+++   G    G S  + K + 
Sbjct: 117 VVTEERRSAPLSALVMKASAGTASKIPLVQVKNIPRYLEQLKQQGIWVYGTSGKASKTIA 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +      +AL++G+EG+G+R    E    +A + +    ++LN + A  V LY  
Sbjct: 177 ELDYQRPLALVIGSEGEGMRRLVAEHCDELARIPLSEGAESLNAAVALGVVLYQA 231


>gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG]
 gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF]
          Length = 314

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 15/280 (5%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQ 70
            +  H      N +  +  +    KSR  S  E   + G + V  AL +     +  + Q
Sbjct: 37  ARKGHVKNRLANAKVKQTQRRTAAKSRGKSSSE--LVVGRNPVFEALRDGVPATALYVQQ 94

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
            +     +      A       +   P   +D++      HQGL L+  P      + + 
Sbjct: 95  FIDNDERVRDALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLP 153

Query: 131 -------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                  +  L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G 
Sbjct: 154 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 213

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242
               P  R++NLT AL+     G   +GL++D +  + E    +  + +++G+EGKGL  
Sbjct: 214 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLSR 273

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              ET      + MPG  ++LN   AA + +Y   +  A+
Sbjct: 274 LVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 313


>gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 253

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 106/242 (43%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  +      D        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIDLCRQSGVVVKFVDKSKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D +       + +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAHEFEYCDIDDILFEARQKKEAPFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       + S KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|77462791|ref|YP_352295.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|77387209|gb|ABA78394.1| tRNA/rRNA metyltransferase [Rhodobacter sphaeroides 2.4.1]
          Length = 261

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 137/238 (57%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL  +A        + V
Sbjct: 13  KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+ +        LL++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+  +GL
Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191

Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             ++   L + +       +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 192 EGEASMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249


>gi|329851537|ref|ZP_08266294.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328840383|gb|EGF89955.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 297

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/281 (31%), Positives = 148/281 (52%), Gaps = 14/281 (4%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           K + EK      +   +  R   +  K QSF +   +       +L+GVH V AAL N +
Sbjct: 16  KNRPEKNAGRPHAPEQQRPRQAENAPKPQSFQKSKVNDDG----WLWGVHAVEAALKNVN 71

Query: 66  RK-IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
           R+   +L  ++     +           V T+    I +++ + AVHQG+AL    L   
Sbjct: 72  RQGPLKLYLSEERTKTIAPALLNRSGLRVSTLMMPDIARMLPQGAVHQGIALHGPVLEGV 131

Query: 125 TLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            L+++      ++++LD V DP NIGAI RSA AF   G++   R+SP    VLAK+A+G
Sbjct: 132 GLESIMEGGDGVILMLDQVTDPQNIGAIFRSAAAFGVQGLVMQDRHSPPLQGVLAKTAAG 191

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-------DKIALILGA 235
           A + +P+ R++NL+ +L+ +   G+ ++GL+ + +  L   +          K+ L+LG+
Sbjct: 192 AADRVPFARVTNLSRSLELLGENGYVSVGLAGEGEFNLHTLLAQQGWGISLKKLVLVLGS 251

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           EG+GLR    E    +A + MPG  ++LNVS+AA+++LY  
Sbjct: 252 EGEGLRRLVAEHCDHLARIPMPGGFESLNVSHAASISLYEA 292


>gi|290890983|ref|ZP_06554047.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
 gi|290479382|gb|EFD88042.1| hypothetical protein AWRIB429_1437 [Oenococcus oeni AWRIB429]
          Length = 233

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 11/229 (4%)

Query: 58  SAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
             AL N    I +L  +K      A+        +   V+ V  Q +D++      HQG+
Sbjct: 1   MEALENNQ-TINKLYLSKSLAKNRAQQFRQTAEKNKIVVQEVDNQRLDELT-NHGNHQGI 58

Query: 115 ALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           A+  A      LD + N        L++LD + DPHN+G+ILR+A A   DGII  KR +
Sbjct: 59  AISIAAYEYVPLDDILNGIKGHDPFLVILDEIEDPHNLGSILRTADATGVDGIIIPKRRA 118

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              + V+AK+++GA+E++P  R+ N+ + + K+    F   G              +  +
Sbjct: 119 VQLTQVVAKTSTGAIEYVPVARVVNINNTIDKLKKANFWIFGTDMKGA-DYNDWNADGPV 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A+++G EGKG+  +T++    M  + M G +++LN S AAA+ +Y   N
Sbjct: 178 AIVIGNEGKGISAQTKKKVDQMLTIPMVGHVQSLNASVAAALLIYQGFN 226


>gi|160893354|ref|ZP_02074141.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
 gi|156865046|gb|EDO58477.1| hypothetical protein CLOL250_00904 [Clostridium sp. L2-50]
          Length = 251

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 15/250 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVP 97
             ++ E   + G + V  A  +    + +L         ++  +  +A       +  V 
Sbjct: 2   EENRNEKFEIEGRNAVMEAFRSGK-TVDKLYLQDGCHDGSINSIVREAKKQETI-INYVS 59

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
            + ++++      HQG+    A      +D +            + +LD + DPHN+GAI
Sbjct: 60  KEKLNQMSSTGK-HQGVIAHVAAYEYSAIDEIFAKAEEKGQPPFIFILDEIEDPHNLGAI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A      G+I  KR +   +A + K+++GA+ + P ++++NL   + ++   G    
Sbjct: 119 VRTANLCGAHGVIIPKRRAVGITATVVKASAGAIAYTPVVKVTNLAKTIDELKKRGMWFA 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               D +  + +      + L++G EG G+    +E    +  + M G I +LN S AA 
Sbjct: 179 CADMDGE-LMYRCNLTGPMGLVIGNEGTGVSRLVKEKCDYVVSIPMSGDIDSLNASVAAG 237

Query: 271 VALYITQNHF 280
           V  Y      
Sbjct: 238 VLGYEVVRQR 247


>gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
 gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
 gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
 gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
 gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
 gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
 gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817345|ref|YP_002817354.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
           684]
 gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
 gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
 gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
 gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
 gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
 gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
 gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
 gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
           684]
 gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
          Length = 265

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 118/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLKEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|165933590|ref|YP_001650379.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
 gi|165908677|gb|ABY72973.1| 23S rRNA Gm2251 methyltransferase [Rickettsia rickettsii str. Iowa]
          Length = 240

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 130/239 (54%), Gaps = 7/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      +    L      + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRAYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +   HQG+A +  P+ S  L+ +   N +  + +LD + D  NIGAI+RSA 
Sbjct: 59  DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  +  SP+E+  +AK+A G LE IP I+++NL   +  +   GF  IGL+  
Sbjct: 118 AFDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 ANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236


>gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 254

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+             A+
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + + L+ LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 103 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|254525374|ref|ZP_05137426.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
           marinus str. MIT 9202]
 gi|221536798|gb|EEE39251.1| RNA methyltransferase, TrmH family, group 3 [Prochlorococcus
           marinus str. MIT 9202]
          Length = 326

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 21/284 (7%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE-------NLFLYGVHTVSAALNNPS 65
              K++  + L R    +K    F+ K +  SQ E       + +++G H+V  AL +  
Sbjct: 45  KKDKNNTSSSLTRRKPIFKSNTEFSNK-KSKSQEEFTSKKNFDDWIWGKHSVYEALIS-Q 102

Query: 66  RKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           R I ++  T    +   +   L         ++ V    + ++    A HQG+AL+ A  
Sbjct: 103 RAINRIWCTSEIFSSDKFYILLKELKLKGVLIEEVSWNRLSQLT-YGASHQGVALQLACS 161

Query: 122 LSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            + +L+ + +       + +++ LD + DPHN+GAI+RSA AF C GII  +R S   + 
Sbjct: 162 KTISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTG 221

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +AK A+GALEH+   R+ NL  AL+ +   GF  +GLS D +  L    +   + +I+G
Sbjct: 222 TVAKVAAGALEHLQVSRVVNLNRALEMLKKNGFLIVGLSGDGQLSLSNFSEKVPLVVIVG 281

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +E KG+   TQ+    +  + + G   +LN S AAA++L+    
Sbjct: 282 SEDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325


>gi|221638657|ref|YP_002524919.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides KD131]
 gi|221159438|gb|ACM00418.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides KD131]
          Length = 261

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 137/238 (57%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL  +A        + V
Sbjct: 13  KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+ +        LL++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+  +GL
Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191

Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             ++   L + +       +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 192 EGEAAMTLAEGLQGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249


>gi|312876807|ref|ZP_07736785.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796426|gb|EFR12777.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 253

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  R      +        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALRSGA-KITEVYISNSAKDRETAQIINLCKQSGIVVKFVDKSKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D +         +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAHEFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       +   KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFATDASGPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|194468086|ref|ZP_03074072.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           100-23]
 gi|194452939|gb|EDX41837.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           100-23]
          Length = 249

 Score =  236 bits (602), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 15/246 (6%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQ 99
                 F+ G H    AL +    I ++        +A++++   A   H   V  VP  
Sbjct: 2   KNENTDFIIGRHPAVMALKSDQE-INKVFIQSGLKADAISQIVKLAKERHLV-VSNVPKN 59

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            +D +  ++  HQG+ L  A     T+D +             ++LD + DPHN+G+I+R
Sbjct: 60  KLDLMTDRQ-NHQGVVLAVAAYQYATIDDLFDNAAKHGEDPFFLILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  +R +   ++V+AK+++GA+EH+P  R++NL    +++   G    G 
Sbjct: 119 TADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQERGVWLFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                K       +  +AL++G EGKG+    ++T   M  + M G +++LN S AA++ 
Sbjct: 179 DMKG-KDYRTWDAHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNASVAASLL 237

Query: 273 LYITQN 278
           +Y   N
Sbjct: 238 IYQGFN 243


>gi|148244642|ref|YP_001219336.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326469|dbj|BAF61612.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 247

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 11/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPH--PFPVKTVPPQTIDK 103
           +++ + G H + A L    + + ++    K    RL+      +     ++      +DK
Sbjct: 3   KSIIITGFHAIQAQLKFNPKYLIKIFILNKRCDKRLNTLILEINNFDINIQQCTKVQLDK 62

Query: 104 IVGKEAVHQGLALETA-PLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   +  HQG+A E   P+L    +       + N+ L+++LD + DP N+GA LRSA A
Sbjct: 63  LSNYQ-THQGIAAEILLPILPNQCELITYVSKLDNASLILILDSIQDPRNLGACLRSANA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  K  S S SA++ K+++GA+  I   +++NL+  ++ +       IGL S +
Sbjct: 122 AGVDCVIINKDGSASISALVHKTSAGAINQIKIFQVTNLSRTIKALQQQNIWVIGLDSSA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + Q       A+I+G+EG GL+  T+++   +A + M G +++LNVS A  + L+  
Sbjct: 182 NTLIYQIDLTTPNAIIMGSEGFGLKRLTKQSCDQLAKIPMQGKVESLNVSVATGITLFEI 241

Query: 277 QNHF 280
               
Sbjct: 242 NRQR 245


>gi|325298424|ref|YP_004258341.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           salanitronis DSM 18170]
 gi|324317977|gb|ADY35868.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           salanitronis DSM 18170]
          Length = 246

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 15/247 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            +N  ++G+  V  A+      I ++L  K+    LA+  + A      PV+ VP + ID
Sbjct: 3   EKNEMIFGIRAVIEAIEAGKE-IDKVLIKKDMQSELAKELFAALKQSFIPVQRVPVERID 61

Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  K   HQG+    +P+         P L     + L ++LD + D  N GAI R+  
Sbjct: 62  RITRK--NHQGVVAFISPITYQRTEDLVPFLFEQGKNPLFILLDGITDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  +P  R +N+   ++ +   GF+ I  +  
Sbjct: 120 CAGVDAIIIPSKNSVSVNADAVKTSAGALLSLPVCRENNILSTIRFLKESGFKIIAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY- 274
                 +   +    +I+GAE  G+  +          + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKADYHSPTCIIMGAEDTGVPYEHLALCDEWIKIPLFGTIESLNVSVAAGILIYK 239

Query: 275 -ITQNHF 280
            I Q  F
Sbjct: 240 AIEQRGF 246


>gi|294777185|ref|ZP_06742642.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
           PC510]
 gi|294449054|gb|EFG17597.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides vulgatus
           PC510]
          Length = 255

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 15/247 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            +N  ++GV  V  A+    R+I ++L  K+  + L  +          PV+ VP + I+
Sbjct: 3   EKNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFTCLKNTLIPVQRVPVERIN 61

Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  K   HQG+    + +         P L     + L ++LD + D  N GAI R+  
Sbjct: 62  RITRK--NHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  +P  R  NLT+ ++ +   GF+ +  +  
Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239

Query: 276 T--QNHF 280
              Q  F
Sbjct: 240 AVKQRGF 246


>gi|291519018|emb|CBK74239.1| rRNA methylase, putative, group 3 [Butyrivibrio fibrisolvens 16/4]
          Length = 249

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 106/246 (43%), Gaps = 14/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTI 101
            E+  + G + V  A  +    I +L   +      +  +  +A       +  V  + +
Sbjct: 2   EESRIVEGRNAVLEAFRSGK-TIDRLFVLEGCKDGPVQTILREAKKSKDTVISFVKKERL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D++  +   HQG+    A      LD +            L++LD++ DPHN+GAI+R+A
Sbjct: 61  DQL-SETGKHQGVIAYAASYDYAELDDILAAAREKGEDPFLIILDNIEDPHNLGAIIRTA 119

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                 G++  K  +   +A +AK+++GA+ + P  +++N++  ++++   G   +    
Sbjct: 120 NQAGAHGVVIPKHRAVGLTATVAKASAGAINYTPVAKVTNISKTMEELKEQGMWFVCADM 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +        I L++G EG G+    ++    +A + M G I +LN S A  V  Y
Sbjct: 180 -GGTTMYDLNLTGSIGLVIGNEGHGVSDLVKKNCDMIASIPMYGDIDSLNASVACGVLAY 238

Query: 275 ITQNHF 280
                 
Sbjct: 239 EVVRQR 244


>gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
 gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
          Length = 265

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|148543542|ref|YP_001270912.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184152948|ref|YP_001841289.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227363502|ref|ZP_03847622.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           MM2-3]
 gi|227545181|ref|ZP_03975230.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           CF48-3A]
 gi|300909142|ref|ZP_07126603.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|325681891|ref|ZP_08161409.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530576|gb|ABQ82575.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri
           DSM 20016]
 gi|183224292|dbj|BAG24809.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227071439|gb|EEI09742.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           MM2-3]
 gi|227184827|gb|EEI64898.1| TrmH family tRNA/rRNA methyltransferase [Lactobacillus reuteri
           CF48-3A]
 gi|300893007|gb|EFK86366.1| RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|324978535|gb|EGC15484.1| RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 249

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 119/246 (48%), Gaps = 15/246 (6%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQ 99
                 F+ G H    AL +    I ++        +A++++   A   H   V  VP  
Sbjct: 2   KNENTDFIIGRHPAVMALKSDQE-INKVFIQSGLKADAISQIVKLAKERHLV-VSNVPKN 59

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            +D +  ++  HQG+ L  A     T+D +             ++LD + DPHN+G+I+R
Sbjct: 60  KLDLMTDRQ-NHQGVVLAVAAYQYATIDDLFDNAAKHDEDPFFLILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    GII  +R +   ++V+AK+++GA+EH+P  R++NL    +++   G    G 
Sbjct: 119 TADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTNLVQTAKELQERGVWLFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                K       +  +AL++G EGKG+    ++T   M  + M G +++LN S AA++ 
Sbjct: 179 DMKG-KDYRTWDAHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNASVAASLL 237

Query: 273 LYITQN 278
           +Y   N
Sbjct: 238 IYQGFN 243


>gi|126461683|ref|YP_001042797.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103347|gb|ABN76025.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 261

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 91/238 (38%), Positives = 137/238 (57%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL  +A        + V
Sbjct: 13  KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-EAIAESGLEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+ +        LL++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+  +GL
Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191

Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             ++   L + +       +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 192 EGEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGGFGSLNVSN 249


>gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 265

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 117/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|226355334|ref|YP_002785074.1| trmH family tRNA/rRNA methyltransferase [Deinococcus deserti
           VCD115]
 gi|226317324|gb|ACO45320.1| putative trmH family tRNA/rRNA methyltransferase [Deinococcus
           deserti VCD115]
          Length = 241

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 119/241 (49%), Gaps = 14/241 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKI 104
           + LYG + V  AL +   ++ ++L  +         +   A       V+  P   +D++
Sbjct: 1   MLLYGRNPVMEALKDG--RVSEVLLARGVEEAFVREVKTLAESVGGVRVRFSPRIELDQL 58

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL-DHVNDPHNIGAILRSAVAF 157
            G    HQG+  E   +   ++D +      R   L++VL D + DP N GAI+RSA   
Sbjct: 59  AGTTQ-HQGILAEVEDMAWASMDDIMDRAEARGEDLVVVLLDGITDPRNFGAIIRSAEVL 117

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++  +R S   S V+AK+A+GA  ++P  +  NL   + ++ + G    G + ++ 
Sbjct: 118 GAHGVVVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLIDQLKAEGVWVYGAAGEAA 177

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L +   + K+AL++GAEG+G+R   +E    +  + + G +++LN S AA + LY   
Sbjct: 178 QELGKVDFSGKLALVIGAEGEGMRRLVREKCDVLVSIPVRGKVQSLNASVAAGILLYEAT 237

Query: 278 N 278
            
Sbjct: 238 R 238


>gi|241563421|ref|XP_002401697.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215501889|gb|EEC11383.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 229

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 132/229 (57%), Gaps = 7/229 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++YG H V +ALNNP R+I  +L T+      D +  L      + V    + K++ + 
Sbjct: 1   YYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNNDILSKLL-EN 56

Query: 109 AVHQGLALETAPLLSPTLD--AVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +HQG+A +  P+ S  L+   ++N +  + +LD + D  NIGAI+RSA AF  + II  
Sbjct: 57  QIHQGIAAKVRPIFSYNLENIDIKNPKCKIAILDQITDTQNIGAIIRSAAAFDINAIILP 116

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  +      ++ 
Sbjct: 117 QDNSPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGSANDYFTDKLI 176

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +DKIAL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 177 SDKIALVFGSEDKGMRRLVEETCDYLAKIPISKRVESLNVSNAASIIFH 225


>gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 418

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 29/296 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLY---------GVH 55
           S     +   ++   +    RN+        F+Q ++   +P+  F++         G H
Sbjct: 103 SSSNKRQPNLVQSRRFTSFSRNN-----QNDFSQSTQEIEKPKQNFVFESESNDIFWGRH 157

Query: 56  TVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +  A L +  R I ++  T          +L  DA       V+ V    +  +     V
Sbjct: 158 STQAILESG-RAIHRIWCTSEIRSSPRFFQLLKDAK-ALGVLVEEVSWARLGHVT-TGGV 214

Query: 111 HQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+AL+TA   +  L        ++  S +L+ LD + DP N+GAI+RSA A    G+I
Sbjct: 215 HQGIALQTAASETFDLKTLIEGCQSIDESPVLIALDGLTDPQNLGAIVRSAEALGAHGLI 274

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R S   +  +AK A+GALEH+P  R+ NL  +L+++   G+  IGL+ +  K + + 
Sbjct: 275 LPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEELKKSGYTIIGLAGEGDKTINEI 334

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +  + L +G+E KGL   T+     +  + + G+  +LN S A +V LY     
Sbjct: 335 TFDGPLVLAIGSEEKGLSLLTRRHCDFLVKIPLRGVTTSLNASVATSVVLYEVARQ 390


>gi|323483931|ref|ZP_08089306.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
           WAL-14163]
 gi|323693473|ref|ZP_08107682.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323402769|gb|EGA95092.1| hypothetical protein HMPREF9474_01055 [Clostridium symbiosum
           WAL-14163]
 gi|323502480|gb|EGB18333.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 246

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A  +     K+F L   ++   +            +  V  + +D++
Sbjct: 4   EELTIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVKTITREARKQDTIINYVAKERLDQL 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      ++ +            L +LD + DPHN+GAI+R+A   
Sbjct: 64  -SETGKHQGVIAFAAAYKYAEVEDILELAREKGEPPFLFILDGIEDPHNLGAIIRTANQA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   ++ +AK+++GA+ + P  +++N++  ++++   G   +      +
Sbjct: 123 GAHGVIIPKRRAVGLTSTVAKTSAGAINYTPVAKVTNISATIEELKEKGLWFVCADMGGE 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + +      I L++G+EG G+    +E    +A + M G I +LN S AA V  Y   
Sbjct: 183 -LMYRMNLKGPIGLVIGSEGDGVSRLVKEKCDYIASIPMKGDIDSLNASVAAGVLAYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|146278291|ref|YP_001168450.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556532|gb|ABP71145.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 261

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            +++R T+  E ++L+G+H V  AL NPSR+  +L+ TKNA  RL  +A        + V
Sbjct: 13  KERARRTTAQETVWLFGIHAVRDALINPSREKLRLVLTKNAADRLG-EAVAAGGIEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+ +        L+++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSAPIDEGSVHQGAALEVRPLDWGSLEDLAASGEGEPLVVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    ++   R+S  E+  LAK+ASGALE  PY+R+ NL + ++++ + G+  +GL
Sbjct: 132 SAEVFGARAVVAPHRHSAPETGALAKTASGALERQPYLRVGNLAETMERLKAIGYMLLGL 191

Query: 213 SSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            S++   L + +       + L+LGAEG GLR KT++T   +  +   G   +LNVSN
Sbjct: 192 DSEAPATLAEGLAIAGKRPVGLVLGAEGPGLRDKTRDTCDVLVRIPAAGGFGSLNVSN 249


>gi|225574359|ref|ZP_03782969.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038415|gb|EEG48661.1| hypothetical protein RUMHYD_02426 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L    +                V+ V  + ++++  + 
Sbjct: 5   IEGRNAVLEAFRSGKCVDKLFVLDGCHDGPVNSIMREARKKDTLVQYVSKERLNQL-SQT 63

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A     T++ +            +++LD + DPHN+GAI+R+A      G
Sbjct: 64  GTHQGVIAVVAAYEYSTVEDILQKAKDKGEDPFILLLDGIEDPHNLGAIIRTANLAGAHG 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +R +   +A +A++++GAL + P  +++NLT  ++ +   G   +    D +K + 
Sbjct: 124 VIIPRRRAVGLTATVARTSAGALNYTPVAKVANLTKTMEVLKKEGMWFVCADMDGQK-MY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      I +++G EG+G+    +E    +A + M G I +LN S AA V  Y      
Sbjct: 183 QLNLRGPIGVVIGNEGEGVSRLVKEKCDFVASIPMKGDIDSLNASVAAGVLSYEVVRQR 241


>gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
 gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
 gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
 gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
 gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
 gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
 gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
 gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
 gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 265

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKTG--IVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|150005407|ref|YP_001300151.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254884288|ref|ZP_05256998.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|149933831|gb|ABR40529.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254837081|gb|EET17390.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
          Length = 255

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 15/247 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHP-FPVKTVPPQTID 102
            +N  ++GV  V  A+    R+I ++L  K+  + L  +  A L +   PV+ VP + I+
Sbjct: 3   EKNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERIN 61

Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  K   HQG+    + +         P L     + L ++LD + D  N GAI R+  
Sbjct: 62  RITRK--NHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  +P  R  NLT+ ++ +   GF+ +  +  
Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239

Query: 276 T--QNHF 280
              Q  F
Sbjct: 240 AVKQRGF 246


>gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
 gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
          Length = 265

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYMVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPTGSFALIVGNEGNGVRQEILTKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
 gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
          Length = 254

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 120/268 (44%), Gaps = 19/268 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K+          +++KK+ +   + +         + G H V  AL + +  + 
Sbjct: 2   KRIQSTKNPQV-------KEWKKLLTKKGQEKM----GLFLIEGFHLVEEALKSHA-PLV 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+  +       W+A      PV  V  + +  I   E   QG+A          +D  
Sbjct: 50  ELIVDEKKEIPPSWNAG---HLPVTIVTEEVMKAISDTE-TPQGIAAVCEQFSYGDIDWT 105

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +  ++++D V DP NIG ++R+A A   D +I  +  +   +  + ++  G+L H+P 
Sbjct: 106 QAN--VLLIDAVQDPGNIGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPI 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           IR  NL + ++++        G + ++ +           AL++G EG G+  K  +  T
Sbjct: 164 IR-GNLREWIERLCEKNVAIYGTALENGEDYRHIKPARPFALLVGNEGSGVHKKLLQMTT 222

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AA + LY  Q
Sbjct: 223 KNLYIPIYGQAESLNVAVAAGILLYHLQ 250


>gi|53714267|ref|YP_100259.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60682323|ref|YP_212467.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|253564783|ref|ZP_04842239.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|265766241|ref|ZP_06094282.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|52217132|dbj|BAD49725.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493757|emb|CAH08547.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|251946248|gb|EES86625.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263253909|gb|EEZ25374.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|301163797|emb|CBW23352.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 246

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +   A      PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFTALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     +   ++LD + D  N GAI R+   
Sbjct: 63  ITRK--NHQGVVAFISSVTYQKTEDLVPFLFEEGKNPFFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AGVDAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y 
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYE 239


>gi|218234920|ref|YP_002369360.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
 gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
          Length = 265

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKTG--IVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKREK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENDVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|237718363|ref|ZP_04548844.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|229452296|gb|EEO58087.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
          Length = 247

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  AL      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+           A  L P L     +   ++LD V D  N GAI R+   
Sbjct: 63  ITRK--NHQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPVRGSVSVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
 gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
 gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
 gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
 gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
 gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
 gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
 gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
 gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
 gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
 gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
 gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
 gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
 gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
          Length = 265

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|167758883|ref|ZP_02431010.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
 gi|167663623|gb|EDS07753.1| hypothetical protein CLOSCI_01228 [Clostridium scindens ATCC 35704]
          Length = 250

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 11/251 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +   Q     + G + V  A  +  P  K+F L   ++   R        H   ++ V  
Sbjct: 2   KEDKQINENIIEGRNAVLEAFRSGKPIDKLFVLDGCQDGPIRTIVREAKKHDTILQFVTK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
           + + +I  +   HQG+    A      ++ +            L++LD++ DPHN+GAI+
Sbjct: 62  ERLSQI-SETGRHQGVIAYAAAYEYADVEDMLKLAESKGEDPFLILLDNIEDPHNLGAII 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G+I  KR +   +A +AK+++GAL + P  +++NL   ++ +   G   + 
Sbjct: 121 RTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMESLKEKGLWFVC 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                ++ +        I LI+G EG+G+    +ET    A + M G I +LN S AA V
Sbjct: 181 ADMGGEE-MYDLNLTGPIGLIIGNEGEGVSRLVKETCDFTARIPMNGDIDSLNASVAAGV 239

Query: 272 ALYITQNHFAK 282
             Y       K
Sbjct: 240 LAYEIVRQRRK 250


>gi|160882253|ref|ZP_02063256.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
 gi|260173823|ref|ZP_05760235.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|299146570|ref|ZP_07039638.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_23]
 gi|315922086|ref|ZP_07918326.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156112342|gb|EDO14087.1| hypothetical protein BACOVA_00199 [Bacteroides ovatus ATCC 8483]
 gi|298517061|gb|EFI40942.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_23]
 gi|313695961|gb|EFS32796.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 247

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  AL      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+           A  L P L     +   ++LD V D  N GAI R+   
Sbjct: 63  ITRK--NHQGVIAFISSVTYQKAEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|255010434|ref|ZP_05282560.1| putative tRNA:rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313148238|ref|ZP_07810431.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313137005|gb|EFR54365.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 246

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 13/239 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     S   ++LD + D  N GAI R+   
Sbjct: 63  ITRK--NHQGVVAFISSVTYQKTEDLVPFLFEEGKSPFFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AGVDAVIIPAKGSVTVNADAMKTSAGALHTLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y 
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDNLALCDEWVKIPMLGSIESLNVSVAAGILIYE 239


>gi|198283233|ref|YP_002219554.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667862|ref|YP_002425465.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247754|gb|ACH83347.1| RNA methyltransferase, TrmH family, group 3 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520075|gb|ACK80661.1| tRNA (guanosine-2'-O-)-methyltransferase, putative
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 255

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 11/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA--TKNALARLD--WDANLPHPFPVKTVPPQTIDKIVG 106
           LYG+H VSAAL+  + ++ +L     + A  R+            PV+      + + + 
Sbjct: 6   LYGIHAVSAALD--AEELLELWVAVERRADERIAPLVQKAAEQRLPVQEWRSVALGRKLN 63

Query: 107 KEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +  HQG+            +A    +     L+VLD V DPHN+GA LRSA A   D +
Sbjct: 64  TDR-HQGVGGLLRAFPGQDFEAILAQLNGCGFLLVLDGVLDPHNLGACLRSAEAAGVDAV 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +  +   +A + K+++G+   +P   ++NL+  L  +   GF  +G++ +  + L  
Sbjct: 123 ILPRDNACPVNATVRKASAGSASRVPVCTVTNLSRTLSSLQEAGFWLVGMAGEGSRSLYA 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  + +++G E KGLR  T+E    +AH+ M G I++LNVS A  + L+      
Sbjct: 183 LDLDMPLVMVMGGEEKGLRRLTREHCDYLAHIPMMGAIESLNVSVATGICLFEAARQR 240


>gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus anthracis CI]
 gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 254

 Score =  235 bits (601), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V   L      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEVLKAG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+P 
Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
 gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
          Length = 251

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 120/268 (44%), Gaps = 21/268 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K++         + +KK+    +K R   +     L G H V  A+ + +  + 
Sbjct: 2   KRIESPKNARV-------KQWKKL--LTKKGRD--ETGLFLLEGFHLVEEAIKSNA-PLV 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+  +       W+       PV  V    +  I   E   QG+A     L +  L+ V
Sbjct: 50  ELIVDERTAVPPGWNVT---GVPVTIVTEAVMRAISSTE-TPQGIAAVCRKLPAE-LEGV 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +   +++D V DP N+G ++R+A A   D +I  +  +   +  + ++  G+L H+P 
Sbjct: 105 KTA---LLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGSLFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  +L   + +    G    G + ++        ++   A+++G EG G+RP      T
Sbjct: 162 VK-GDLAQWIARFKEQGIPVYGTALENAVDYRTVPQSSSFAILVGNEGSGVRPDLLRLTT 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AA + LY  Q
Sbjct: 221 ENVYIPIYGRAESLNVAVAAGILLYSLQ 248


>gi|291167104|gb|EFE29150.1| RNA methyltransferase, TrmH family, group 3 [Filifactor alocis ATCC
           35896]
          Length = 242

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 113/241 (46%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL      +  +  +K++     R            +K      ++++  +
Sbjct: 3   IEGRNAVLEALKKEI-PLDVIYVSKDSKEGSIRKIISMAKEKKIILKQTDRMKLEQMT-E 60

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+   T      T++ +         +  L++LD + DPHN+GA++RSA     D
Sbjct: 61  TAAHQGVIALTMDYAYSTVEEILASVKMQNKTGFLLILDEIEDPHNLGALIRSAEGAGVD 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  KR S + +A + K+++GA+ ++   R++N++  ++ +    +   GL  D  +  
Sbjct: 121 GVILPKRRSATVNATVEKTSAGAVSYMKVARVTNISQTIELLKKENYWVYGLDMDGTE-Y 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q   +  IA+++G EGKG+    ++    +  + M G I++LN S A +V L+      
Sbjct: 180 TQNDWSGNIAIVVGNEGKGMGRLVRQHCDKILSIPMKGQIQSLNASVAGSVILFEASKQR 239

Query: 281 A 281
            
Sbjct: 240 G 240


>gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 313

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 20/280 (7%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------LFLYGVHTVSAALNN--PSRKIF-- 69
           A++R+ H+  +   S  +++     P           + G + V  AL    P+  ++  
Sbjct: 35  AEMRKGHKKNRLATSRAKQATRRPAPRGRGGRSTSELVVGRNPVVEALREGVPANTLYVQ 94

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           Q +     +      A       +   P   +D++      HQGL L+  P      + +
Sbjct: 95  QFIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDL 153

Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 154 VSAAHDAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241
                P  R +NLT AL+     G   +GL++D +  + + +  +  + +++G+EGKGL 
Sbjct: 214 TAARTPVARATNLTRALEAYKKAGITVVGLAADGEAAVGDLKALDGPVVIVVGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA + LY T    A
Sbjct: 274 RLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYETARRRA 313


>gi|295103429|emb|CBL00973.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
           SL3/3]
          Length = 297

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 20/276 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           R   +++KKM+  NQ  R     E         +YG + V+  L + S     L+A   A
Sbjct: 21  RPERKEHKKMEERNQPRRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEGMA 80

Query: 78  LARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
            A   +   L       VK V P  +  + G E+ HQG+A   + +   T++ +      
Sbjct: 81  PAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKA 139

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++ D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P
Sbjct: 140 KGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLP 199

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++N+ + ++++   G        D    L +      IAL+LG+EG G+    ++  
Sbjct: 200 VARVANIGETIRRLKEQGVFVYCADMDG-VSLRKNNLTGPIALVLGSEGSGVSQLVKKLC 258

Query: 249 TSMAHLHM--PG-IIKALNVSNAAAVALYITQNHFA 281
             +  L M  PG  + + NVS AA + LY  Q+  A
Sbjct: 259 DGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294


>gi|238916436|ref|YP_002929953.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
 gi|238871796|gb|ACR71506.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
          Length = 246

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 11/237 (4%)

Query: 53  GVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           G + V  A  +     K+F L   ++   +            +  V  + +D++ G    
Sbjct: 10  GRNAVLEAFRSGKTIDKLFILDGCQDGPIKSIVREAKKTDAIINYVDKERLDRLAGT-GH 68

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           HQG+    A      +D +            + +LD + DPHN+GAI+R+A      G+I
Sbjct: 69  HQGVVAIGAAYEYAEVDDILASAKEKGEDPFIFILDEIEDPHNLGAIIRTANLAGAHGVI 128

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             KR +   +A +AK+++GA+ + P  +++N++  ++++   G   +      +  +   
Sbjct: 129 IPKRRAVGLTATVAKTSAGAINYTPVAKVTNISQTIEELKKQGLWFVCADMGGET-MYNL 187

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                I L++G EG G+    ++    +A + M G I +LN S AA V  Y      
Sbjct: 188 NLKGPIGLVIGNEGNGVSRLVKDKCDFIASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 265

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 117/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVIRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGGFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|171463420|ref|YP_001797533.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192958|gb|ACB43919.1| RNA methyltransferase, TrmH family, group 3 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 255

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 107/243 (44%), Gaps = 13/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIV 105
            L G H V A L      +  +        R        A       +     + + K+ 
Sbjct: 4   MLVGFHVVQARLRVDPNSLKSVYFDSGRRDRRMGDFLKQAEEILGERLHAADAERLHKLT 63

Query: 106 GKEAVHQGLALETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           G +  HQG+      +        +   +++     L ++LD V DPHN GA LR A   
Sbjct: 64  GHDR-HQGVVALAEKMAIVRTITEVVEDVESTHEKPLFLILDGVTDPHNFGACLRVADGA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D  +  K  S S +A ++K + GA E +P I ++NL  ++++M   G   IG   ++ 
Sbjct: 123 GVDAAVIPKDRSASINATVSKVSGGAAEVMPVITVTNLVRSMKEMQEAGVWLIGTDDEAT 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +        IA+++GAEG+G+R  T+ET   +  + M G++ +LNVS A+ V LY   
Sbjct: 183 KSIYDIDLTGSIAIVMGAEGEGMRRLTKETCDELVRIPMQGVVSSLNVSVASGVCLYEVL 242

Query: 278 NHF 280
              
Sbjct: 243 RQR 245


>gi|39938738|ref|NP_950504.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
 gi|39721847|dbj|BAD04337.1| cation transport ATPase [Onion yellows phytoplasma OY-M]
          Length = 1056

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 42   HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
               Q  N+ +YG + +  A+    RKI+QL   +     L       H    + V  + +
Sbjct: 815  ERKQIINMIIYGKNPIKEAIK-AQRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFL 873

Query: 102  DKIVGKEAVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFS 158
              +  K+  HQG+A          LD   +S   Q  ++LD +NDPHN+GAILR+  A +
Sbjct: 874  YDLT-KQKTHQGVAANVCDYTFYDLDTYLDSAKFQKFLILDAINDPHNLGAILRTVEACA 932

Query: 159  CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             DG+I +K++    ++ +AK + GALE+     ++NL   + K+       +G  S+S +
Sbjct: 933  LDGVIMSKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQ 992

Query: 219  PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               Q  KN  +A+I+G EG G+R   ++    +  + M G I +LNVS AAA+ +Y T
Sbjct: 993  SFHQIPKNSSLAIIVGNEGIGIRHLLKQQCDLLVKIPMYGKINSLNVSVAAALMIYST 1050


>gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
 gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
          Length = 265

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I SL++          + +KK+Q+  ++ +        F+ G H V  AL        
Sbjct: 13  KNIDSLQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VAV 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  +      +  VP + I K++ +    QG+           +D  
Sbjct: 60  ELIVSDQTDLPKDWTVS---DVEMYIVP-EAIVKVLRETETTQGVFA-VCEKHEKEVDLT 114

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 115 DGK--FLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++     +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKEKNVPVYGTALENGVSYGEVTPTGSFALIVGNEGNGVRQEILTKCD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|329955854|ref|ZP_08296657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
           12056]
 gi|328525234|gb|EGF52284.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides clarus YIT
           12056]
          Length = 246

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+    + I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              K   HQG+    + +         P L     + L ++LD + D  N GAI R+   
Sbjct: 63  FTRK--NHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL D LQ + + GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VKQR 244


>gi|332557678|ref|ZP_08412000.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|332275390|gb|EGJ20705.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 261

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 92/238 (38%), Positives = 137/238 (57%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++SR  +  E ++L+G+H V  AL NP R+  +L+ TKNA  RL  DA        + V
Sbjct: 13  KERSRRAAAQETVWLFGIHAVRDALANPLRQKLRLVLTKNAADRLG-DAIAESGLEPEIV 71

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILR 152
            P+     + + +VHQG ALE  PL   +L+ +        LL++LD V DPHN+GA+LR
Sbjct: 72  DPRKFSVPIDEGSVHQGAALEVKPLDWGSLEDLAASGAGQPLLVLLDRVTDPHNVGAVLR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL + ++K+ + G+  +GL
Sbjct: 132 SAEVFGARAVIAPHRHSAPETGALAKTASGALERQPYLRVGNLGETMEKLKAMGYILVGL 191

Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             ++   L + +       +AL+LGAEG GLR KT+ET   +  +   G   +LNVSN
Sbjct: 192 EGEAAMTLAEGLEGTAGRPVALVLGAEGPGLREKTRETCDRLVRIPAAGEFGSLNVSN 249


>gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
           40736]
 gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
           40736]
          Length = 311

 Score =  235 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 13/277 (4%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--QLL 72
           ++    +++     K  ++ ++     ++  +  + G ++V  AL    P+  ++  Q +
Sbjct: 36  EARKGHVKQRAAQAKSRRAQSRTKGPRAKGTSELVVGRNSVVEALREGVPASTLYVQQFI 95

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-- 130
            +   +      A       +   P   +D++      HQGL L+  P      + +   
Sbjct: 96  DSDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLAAA 154

Query: 131 -----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                +  L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++GA  
Sbjct: 155 AADEGDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGAAA 214

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKT 244
             P  R +NLT AL+     G   +GL++D +  L + E     +A+++G+EGKGL    
Sbjct: 215 RTPVARATNLTRALEAYKKAGIVVVGLAADGEAELGDLEALGGPVAIVVGSEGKGLSRLV 274

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            ET      + MPG  ++LN   AA + LY      +
Sbjct: 275 GETCDYRVRIPMPGGTESLNAGVAAGIVLYEAARRRS 311


>gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
 gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
          Length = 251

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 117/268 (43%), Gaps = 21/268 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K++           +KK+ +     +   +     L G H V  A+ + +  + 
Sbjct: 2   KRIESPKNARVKH-------WKKLLT----KKGREETGCFLLEGFHLVEEAVKSQA-PLV 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+  +       WD +     PV  V    +  I   E   QG+A             +
Sbjct: 50  ELIVDERTTIPPGWDVS---DVPVVIVTETVMKAISSTE-TPQGIAAICRQRPH----EL 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +  +++D V DP N+G ++R+A A   D +I  +  +   +  + ++  G+L H+P 
Sbjct: 102 TGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQGSLFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  ++ + + ++   G    G + ++        ++   AL++G EG G+R +  E  T
Sbjct: 162 VK-GDVAEWITRLKEQGVPVYGTALENAVDYRAIPQSSSFALLVGNEGSGVRRELLEMTT 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AA + LY  Q
Sbjct: 221 ENVYIPIYGQAESLNVAVAAGILLYSLQ 248


>gi|34581366|ref|ZP_00142846.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
 gi|28262751|gb|EAA26255.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
          Length = 240

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 130/239 (54%), Gaps = 7/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      + +  L      + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTRKIF---ETNKKLIGTRAYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +   HQG+A +  P+ S  L+ +   N +  + +LD + D  NIG I+RSA 
Sbjct: 59  DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGTIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  
Sbjct: 118 AFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 ANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASIIFH 236


>gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
 gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
 gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
 gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
          Length = 257

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 117/274 (42%), Gaps = 21/274 (7%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           + + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      
Sbjct: 3   RMKNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--V 49

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           I +L+ +       DW         +  VP + I K++ +    QG+            +
Sbjct: 50  ITELIVSDQTDLPKDWTVT---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---E 102

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                   ++LD + DP N+G I+R+A A     ++  +    + ++ + +S  G++ H+
Sbjct: 103 IALTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGSIFHL 162

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P ++  NL + + K+        G S ++  P  +       ALI+G EG G+R +    
Sbjct: 163 PIVK-GNLEEWVDKLKEKNVPVYGTSLENGIPYGEVTPTGSFALIVGNEGNGVRLEILTK 221

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 222 CNQNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 255


>gi|170692230|ref|ZP_02883393.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
           C4D1M]
 gi|170142660|gb|EDT10825.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia graminis
           C4D1M]
          Length = 247

 Score =  235 bits (600), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
            LYG H V+A + + +  +  +        R   +           +       +  +  
Sbjct: 6   VLYGFHAVTARIRHDASTVEDVYYDATRKDRRMTEFLHTAKEAGVRLIAADETRLWGLAH 65

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            E  HQG+         A  L+  LD +  S LL+VLD V DPHN+GA LR A A     
Sbjct: 66  TER-HQGVVARAGDMPLAQNLAELLDGINGSPLLLVLDGVTDPHNLGACLRVADAAGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   +A  AK ASGA + +PYI ++NL  AL+++   G   +G + ++KK L 
Sbjct: 125 VIAPRDRAVGLNATAAKVASGAADTVPYITVTNLARALRELKEAGVWIVGTAGEAKKSLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +   +  +A+++GAEG+G+R  T +T   +  + M G +++LNVS A+ V L+      A
Sbjct: 185 ETELDGPVAIVMGAEGEGMRRLTHDTCDIVMQIPMAGTVESLNVSVASGVCLFEAVRQRA 244


>gi|300934670|ref|ZP_07149926.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 316

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 131/283 (46%), Gaps = 20/283 (7%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKS-----RHTSQPENLFLYGVHTVSAALNN--PSRK 67
            K +  A+ R  H  +++ +   +++     RH        + G + V   L+   P+  
Sbjct: 34  RKATPKAEDRTYHPAHRRKKEAERRASGAHNRHERADAVELVVGRNPVVECLHANVPATA 93

Query: 68  IFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           ++    TKN   RL    +        V  V  Q +D++ G   +HQG+ L+  P     
Sbjct: 94  LYVAEGTKN-DERLSEAVHTCADRGISVLEVSRQELDRMTG-NGMHQGIGLQIPPYKYTE 151

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           ++ +           +++ LD++ DP N+GA++RS  AF   G++  +R S S +AV  +
Sbjct: 152 VEDLIESTANAATPGMIVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWR 211

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++G    +P  + +N+   L++    G+Q +GL +     L+       + +++G+EGK
Sbjct: 212 TSAGTAARLPVAKATNMVRTLKQFQQAGYQVVGLDAGGDHTLDTYDGTTPVVIVVGSEGK 271

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
           GL     ET  ++  + M   +++LN S AA V L  +  Q  
Sbjct: 272 GLSRLVSETCDTIMSVPMAKWVESLNASVAAGVVLSEFARQRR 314


>gi|118594777|ref|ZP_01552124.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440555|gb|EAV47182.1| probable RNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 248

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 11/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKIVG 106
            +YG H++++ +   +  +  +   ++   AR+     L   +           +D ++ 
Sbjct: 6   IIYGFHSITSRIRLDASSVKDVYLDESRNDARMADLLKLIKENDIAFHLSSKDRLDGMI- 64

Query: 107 KEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             + HQG+           +       +      LL++LD V DPHN+GA  R A A   
Sbjct: 65  PSSKHQGVIANIFESKQKYVTIEDVLEEVTSEPPLLLILDGVEDPHNLGACFRVADAMGV 124

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             II  K  +   +A + K A G  E +P+I ++N+   ++ +   G   IG   ++K  
Sbjct: 125 HAIICPKDSAVGVNATVRKVACGGAESVPFIAVTNIGRTIRTLKDQGLFIIGTDGEAKHN 184

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L QE     IA++LG+EGKG+R  T+E   S+  + M G +++LNVS A+ + L   +  
Sbjct: 185 LYQENLKGPIAMVLGSEGKGMRRLTRELCDSLVSIPMFGQVESLNVSVASGICLSEIRRQ 244

Query: 280 FA 281
            +
Sbjct: 245 RS 246


>gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
 gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
          Length = 314

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 15/280 (5%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQ 70
            +  H      N +  +  +    KSR  S  E   + G + V  AL +     +  + Q
Sbjct: 37  ARKGHVKNRLANAKAKQTQRRTAAKSRGKSSSE--LVVGRNPVFEALRDGVPATALYVQQ 94

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
            +     +      A       +   P   +D++      HQGL L+  P      + + 
Sbjct: 95  FIDNDERVRDALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLP 153

Query: 131 -------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                  +  L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G 
Sbjct: 154 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 213

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242
               P  R++NLT AL+     G   +GL++D +  + E    +  + +++G+EGKGL  
Sbjct: 214 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHAVGELAALDGPVVIVIGSEGKGLSR 273

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              ET      + MPG  ++LN   AA + +Y   +  A+
Sbjct: 274 LVGETCDYRVSIPMPGGAESLNAGVAAGIVMYEAASRRAR 313


>gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624]
 gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624]
          Length = 249

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+    ++++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRESLEKLAGL- 66

Query: 109 AVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P  +     +          LL+ LD V DPHN+GA +R+A A     +
Sbjct: 67  PFHQGVVAAVRPYPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKK-PL 220
           I  +  S S +    K A+G  E + +I+++NL   L  +      + IG   D    P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDESALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|160943055|ref|ZP_02090293.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445749|gb|EDP22752.1| hypothetical protein FAEPRAM212_00532 [Faecalibacterium prausnitzii
           M21/2]
          Length = 297

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 77/276 (27%), Positives = 128/276 (46%), Gaps = 20/276 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           R   +++KKM+  NQ  R     E         +YG + V+  L + S     L+A   A
Sbjct: 21  RPERKEHKKMEERNQPRRPRRDAEQPQQKSESLIYGKNPVTELLKSGSGVDTVLIAEGMA 80

Query: 78  LARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
            A   +   L       VK V P  +  + G E+ HQG+A   + +   T++ +      
Sbjct: 81  PAVAAYYTALAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKA 139

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++ D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P
Sbjct: 140 KGEPPFLVLSDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLP 199

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             R++N+ + ++++   G        D    L +      IAL+LG+EG G+    ++  
Sbjct: 200 VARVANIGETIRRLKEQGVFVYCADMDG-VSLRKNNLTGPIALVLGSEGSGVSQLVKKLC 258

Query: 249 TSMAHLHM--PG-IIKALNVSNAAAVALYITQNHFA 281
             +  L M  PG  + + NVS AA + LY  Q+  A
Sbjct: 259 DGVVRLDMAAPGTGVDSYNVSVAAGIILYEIQSQRA 294


>gi|256786299|ref|ZP_05524730.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
 gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
 gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
          Length = 314

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 120/279 (43%), Gaps = 13/279 (4%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--Q 70
           ++  H  +   N +  +      Q+ R   +  +  + G + V  AL    P+  ++  Q
Sbjct: 37  MRKGHAKQRAANAKARRTTGGRPQQRRGGGRSTSELVVGRNPVYEALREGVPASTLYVQQ 96

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129
            +     +      A       +   P   +D++      HQGL L+  P      + + 
Sbjct: 97  FIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLV 155

Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G 
Sbjct: 156 AAAHDEGTDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGT 215

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242
               P  R +NLT AL++    G   +GL++D +  L +    +  + +++G+EGKGL  
Sbjct: 216 AARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVVIVVGSEGKGLSR 275

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ET      + MPG  ++LN   AA + LY      +
Sbjct: 276 LVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRRS 314


>gi|254461438|ref|ZP_05074854.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2083]
 gi|206678027|gb|EDZ42514.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 259

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 94/253 (37%), Positives = 145/253 (57%), Gaps = 9/253 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K     ++ +  +  E ++L+G+H V  AL NP R   +L+ T+NA+ +L          
Sbjct: 5   KWVVKKEQDKKAADAETVWLFGLHAVRDALMNPERTKLKLVVTRNAMDKLSEAIAFSELE 64

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146
           P +   P+  +  +  ++VHQG ALE  PL    L+ V           ++LD V DPHN
Sbjct: 65  P-EMCEPRKFNAPLDPQSVHQGAALEVKPLTWGRLEEVCIGGTAAVPRAVLLDRVTDPHN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAILRSA  F    +I T R S  E+  LAK+ASGALE  PY+RI NL ++++ +   G
Sbjct: 124 VGAILRSAEVFGASAVIGTHRGSAPETGALAKTASGALERQPYLRIRNLAESIESLQKMG 183

Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +  IGL  ++++ ++  +   ++  IAL++GAEG GLR KT++T  ++  +   G   +L
Sbjct: 184 YLVIGLDGEAEQTIDAYLEGKRDRPIALVMGAEGPGLREKTKDTVDALVKVEFAGAFGSL 243

Query: 264 NVSNAAAVALYIT 276
           NVSNAAAVALY +
Sbjct: 244 NVSNAAAVALYAS 256


>gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|254806469|sp|A1TG08|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
 gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium
           vanbaalenii PYR-1]
          Length = 314

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 13/252 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKT 95
            RH    +   + G + V   L    P+  ++  L   ++  RL     +       +  
Sbjct: 62  GRHKKTDDTEIVLGRNPVLECLRAGVPATALYVALGA-DSDERLTESVQIAADKGIAILE 120

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           VP   +D+I     +HQG+AL+  P      D +           LL+ LD+++DP N+G
Sbjct: 121 VPRHDLDRIAA-NGMHQGIALQVPPYNYAHPDDLLAEAKSDAMPALLVALDNISDPRNLG 179

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RS  AF   G++  +R S S +AV  ++++GA    P  R +NLT AL++    G Q
Sbjct: 180 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAGLQ 239

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +D    ++Q      I +++G+EGKGL    +E   ++  + M G  ++LN S A
Sbjct: 240 VVGLDADGDTTVDQIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA 299

Query: 269 AAVALYITQNHF 280
           A V L       
Sbjct: 300 AGVVLAEIARQR 311


>gi|153814446|ref|ZP_01967114.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
 gi|317500160|ref|ZP_07958393.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087613|ref|ZP_08336541.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848842|gb|EDK25760.1| hypothetical protein RUMTOR_00658 [Ruminococcus torques ATCC 27756]
 gi|316898449|gb|EFV20487.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330399792|gb|EGG79452.1| RNA methyltransferase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 258

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 12/251 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
             ++   L + G + V  A  +     K+F L   ++   R        H   +  V  +
Sbjct: 10  EETKEHTLVIEGRNAVLEAFRSGRTIDKLFVLDGCQDGPVRTIVREAKKHGTILNFVGKE 69

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            + ++  +   HQG+    A      +D +            L+VLD + DPHN+GAI+R
Sbjct: 70  RLSQLT-QTGRHQGVIAYAAAYDYAEIDDMLKLAEKRGEDPFLIVLDGIEDPHNLGAIIR 128

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +  
Sbjct: 129 TANIAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGIWFVCA 188

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             D  + +        I L++G EG G+    +E    +A + M G I +LN S A  V 
Sbjct: 189 DMDG-QSMYDMNLTGPIGLVVGNEGDGVSRLVKENCDFVASIPMKGEITSLNASVAGGVL 247

Query: 273 LYI-TQNHFAK 282
            Y   +   AK
Sbjct: 248 AYEIVRQRLAK 258


>gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           himastatinicus ATCC 53653]
          Length = 317

 Score =  235 bits (600), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 121/274 (44%), Gaps = 13/274 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--QLLATK 75
           +AK R  +   ++        R  ++  N  + G + V  AL    P+  ++  Q + + 
Sbjct: 45  HAKQRIANARTRQAAKRPAPRRGGAKGTNELVVGRNPVVEALREGVPANTLYVQQFIDSD 104

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
           + +      A       +   P   +D++      HQG+ L+  P      + +      
Sbjct: 105 DRVREGLKIAADRGGIHLMEAPKAELDRMT-NGLNHQGMVLQVPPYDYAHPEDLSAAAFD 163

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G     P
Sbjct: 164 DGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTP 223

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQET 247
             R +NLT AL+     G   +GL++D +  L+  E  +  + +++G+EGKGL     ET
Sbjct: 224 VARATNLTRALESYQKAGLTVVGLAADGETELQDLEALDGPVVIVVGSEGKGLSRLVGET 283

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 + MPG  ++LN   AA V LY      +
Sbjct: 284 CDFRVRIPMPGGAESLNAGVAAGVVLYEASRRRS 317


>gi|29346770|ref|NP_810273.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572226|ref|ZP_04849629.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|298386583|ref|ZP_06996139.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           1_1_14]
 gi|29338667|gb|AAO76467.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251838001|gb|EES66089.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|298260960|gb|EFI03828.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           1_1_14]
          Length = 247

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     +   ++LD + D  N GAI R+   
Sbjct: 63  ITRK--NHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPARGSVSVNADAMKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDTGVSYDHLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|157828863|ref|YP_001495105.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801344|gb|ABV76597.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 240

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 131/239 (54%), Gaps = 7/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      +    L      + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRAYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +  +HQG+A +  P+ S  L+ +   N +  + +LD + D  NIGAI+RSA 
Sbjct: 59  DILSKLL-ENQIHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  +  SP+E+  +AK+A G LE IP I+++NL   +  +   GF  IGL+  
Sbjct: 118 AFDINAIILPQDNSPNENGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 ANDYFTDKLISDKIVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236


>gi|157413277|ref|YP_001484143.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387852|gb|ABV50557.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9215]
          Length = 326

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 82/283 (28%), Positives = 143/283 (50%), Gaps = 19/283 (6%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSF-NQKSRHTSQ---PENL--FLYGVHTVSAALNNPSR 66
              K++  + L R    +K    F N+KS++  +    +N   +++G H+V  AL +  R
Sbjct: 45  KKDKNNTSSSLTRRKPIFKSNTEFSNKKSKYQEEFTSKKNFDDWIWGKHSVYEALIS-QR 103

Query: 67  KIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
            I ++  T    +   +   L         ++ V    + ++    A HQG+AL+ A   
Sbjct: 104 AINRIWCTSEIFSSDKFYILLKELKLKGVLIEEVSWNRLSQLT-YGASHQGVALQLACSK 162

Query: 123 SPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           + +L+ + +       + +++ LD + DPHN+GAI+RSA AF C GII  +R S   +  
Sbjct: 163 TISLEKLIDISKHNCANPIILALDGITDPHNVGAIIRSAEAFDCKGIIIPQRRSAGLTGT 222

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           +AK A+GALEH+   R+ NL  AL+ +   GF  +GLS D +  L    +   + +I+G+
Sbjct: 223 VAKVAAGALEHLQVSRVVNLNRALEVLKKNGFLIVGLSGDGQLSLSNFSEIVPLVVIVGS 282

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E KG+   TQ+    +  + + G   +LN S AAA++L+    
Sbjct: 283 EDKGISLLTQKKCDFLLSIPLKGKTSSLNASVAAAISLFHLTR 325


>gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 265

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGKVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
 gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
          Length = 324

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 21/288 (7%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           + ++I + + + Y   R+  R  +++     ++R      +  L G + V  AL      
Sbjct: 39  EKQRIKAAERAQYLATRK-VRVVEELPGATVRARD----GSELLIGRNPVVEALRAKVPA 93

Query: 68  IFQLLATK-NALARLDWDANLP--HPFPVKTVPPQTIDKIVGK----EAVHQGLALETAP 120
           +  LL+   +   R+   A L       +  V    +D+   +    +A HQGL L+  P
Sbjct: 94  VRLLLSNSLDPDERITEAARLAGQQGIAIAEVARPELDRRCERLGLPKAAHQGLILQVEP 153

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
               T D +         + L++ LD V DPHN+GAI RSA AF   G++  +R +   +
Sbjct: 154 YEYATADDLLAEARKGETTPLIVALDGVTDPHNLGAIARSAAAFGAHGLLVPERRAAGVT 213

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALI 232
               K+++G L  IP  ++ NLT  L++    GF   GL +D   PL+Q E+  +   ++
Sbjct: 214 TAAWKASAGTLARIPVAQVVNLTRTLKQFQEAGFFVSGLDADGDTPLDQWELATEPSVVV 273

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+EGKGL    +ET   +  + + G +++LN S AA VALY      
Sbjct: 274 VGSEGKGLSRLVRETCDVVVSIPIHG-VESLNASVAAGVALYEAVRRR 320


>gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
          Length = 265

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+             A+
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 113

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + + L+ LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 114 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|218130102|ref|ZP_03458906.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
 gi|317476595|ref|ZP_07935840.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987606|gb|EEC53934.1| hypothetical protein BACEGG_01689 [Bacteroides eggerthii DSM 20697]
 gi|316907191|gb|EFV28900.1| RNA methyltransferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 246

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+    + I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              K   HQG+    + +         P L     + L ++LD + D  N GAI R+   
Sbjct: 63  FTRK--NHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL D LQ + + GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQYLKNSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VKQR 244


>gi|240146531|ref|ZP_04745132.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
           L1-82]
 gi|257201342|gb|EEU99626.1| RNA methyltransferase, TrmH family, group 3 [Roseburia intestinalis
           L1-82]
 gi|291535116|emb|CBL08228.1| rRNA methylase, putative, group 3 [Roseburia intestinalis M50/1]
          Length = 246

 Score =  234 bits (599), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A  +     K+F L   ++   R        H   V  V  + +D++
Sbjct: 4   EELKIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVHFVEKERLDQL 63

Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A              +       L +LD++ DPHN+GAI+R+A   
Sbjct: 64  -SETKKHQGVIAVAAAYEYAEVEDMLKLAEEKGEPPFLFILDNIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GA+ + P  +++NLT  ++++   G   +    D  
Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTATMKELKDKGMWFVCADMDG- 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +        I L++G+EG+G+    +E    +A + M G I +LN S AA V  Y   
Sbjct: 182 TCMYDLDLKGPIGLVIGSEGEGVGRLVRENCDFVASIPMKGDIDSLNASVAAGVLAYEIV 241

Query: 278 NHFAK 282
               +
Sbjct: 242 RQRMR 246


>gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 313

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 122/280 (43%), Gaps = 20/280 (7%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------LFLYGVHTVSAALNN--PSRKIF-- 69
           A++R+ H+  +   +  +++     P           + G + V  AL    P+  ++  
Sbjct: 35  AEMRKKHKANRIANAKAKQAARRPAPRGRGGKGTSEMVVGRNPVVEALREGVPASTLYVQ 94

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           Q +     +      A       +   P   +D++      HQGL L+  P      + +
Sbjct: 95  QFIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDL 153

Query: 130 RNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            N+        L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 154 ANAAYDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAG 213

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241
                P  R +NLT AL+     G   +GL++D +  + E E     + +++G+EGKGL 
Sbjct: 214 TAARTPVARCTNLTRALEAYKKAGVVVVGLAADGESEIGELEALGGPVVIVVGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA V LY      A
Sbjct: 274 RLVGETCDYRVRIPMPGGAESLNAGVAAGVVLYEAARRRA 313


>gi|167762351|ref|ZP_02434478.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
           43183]
 gi|167699994|gb|EDS16573.1| hypothetical protein BACSTE_00705 [Bacteroides stercoris ATCC
           43183]
          Length = 246

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+    + I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAVQ-AGKDIDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     + L ++LD + D  N GAI R+   
Sbjct: 63  ITRK--NHQGVIAFVSAVTYQKTEDLVPFLFEEGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL D LQ + S GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVTVNADAVKTSAGALHTLPVCREQNLKDTLQFLKSSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VKQR 244


>gi|116491407|ref|YP_810951.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|116092132|gb|ABJ57286.1| rRNA methylase [Oenococcus oeni PSU-1]
          Length = 233

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 11/229 (4%)

Query: 58  SAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
              L N    I +L  +K      A+        +   V+ V  Q +D++      HQG+
Sbjct: 1   METLENNQ-TINKLYLSKSLAKNRAQQFRQTAEQNKIVVQEVDNQRLDELT-NHGNHQGI 58

Query: 115 ALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           AL  A      LD + N        L++LD + DPHN+G+ILR+A A   DGII  KR +
Sbjct: 59  ALSIAAYEYVPLDDILNGIKDHDPFLVILDEIEDPHNLGSILRTADATGVDGIIIPKRRA 118

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              + V+AK+++GA+EH+P  R+ N+ + + K+    F   G              +  +
Sbjct: 119 VQLTQVVAKTSTGAIEHVPVARVVNVNNTIDKLKKANFWIFGTDMKG-TDYTDWNADGPV 177

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A+++G EGKG+  +T++    M  + M G +++LN S AAA+ +Y   N
Sbjct: 178 AIVIGNEGKGISAQTKKKVDQMLTIPMIGHVQSLNASVAAALLIYQGFN 226


>gi|15892932|ref|NP_360646.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
 gi|15620124|gb|AAL03547.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
          Length = 240

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 78/239 (32%), Positives = 131/239 (54%), Gaps = 7/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      + +  L      + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRAYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +   HQG+A +  P+ S  L+ +   N +  + +LD + D  NIGAI+RSA 
Sbjct: 59  DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  
Sbjct: 118 AFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 ANDYFTNKLISDKIVLVFGSEDKGIRRLVVETCDYLAKIPISQRVESLNVSNAASIIFH 236


>gi|291563601|emb|CBL42417.1| rRNA methylase, putative, group 3 [butyrate-producing bacterium
           SS3/4]
          Length = 248

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 12/246 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A  +     ++F L   ++   R        H   V  VP + +D +
Sbjct: 4   EELTIEGRNAVLEAFRSGKTIDRLFVLDGCQDGPVRTIVREAKKHDTIVNFVPKERLDSM 63

Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A              +       L +LD + DPHN+GAI+R+A   
Sbjct: 64  -SETGHHQGVMAYAAAYEYAEVEDILKIAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +A++++GAL + P  +++N+   ++ +   G   +      +
Sbjct: 123 GAHGVIIPKRRAVGLTATVARTSAGALNYTPVAKVTNMAATIEDLKKRGIWFVCADMGGE 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-T 276
             + +      I L++G EG+G+    +E    +A + M G I +LN S A  V  Y   
Sbjct: 183 -SMYRLNLTGPIGLVIGNEGEGVSRLVKEKCDMIASIPMKGDIDSLNASVATGVLAYEIV 241

Query: 277 QNHFAK 282
           +   AK
Sbjct: 242 RQRLAK 247


>gi|298373202|ref|ZP_06983192.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298276106|gb|EFI17657.1| RNA methyltransferase, TrmH family, group 3 [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 248

 Score =  234 bits (599), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPP 98
                EN  ++G+H++  A+    R I ++   ++    L +  +     +  P + VP 
Sbjct: 2   QKRVKENKMIFGLHSIIEAIE-AGRDIEKIYLKRDFGGELVKTLFAKIKTYGIPCRKVPV 60

Query: 99  QTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           + ++     E  HQG     A +         PTL     + L++ LD V D  N GAI 
Sbjct: 61  EKLNSFT--EKNHQGAVAFVAEISYSNISDIIPTLYEAGKTPLIVALDGVTDIRNFGAIS 118

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+      D I+     S + +A   K+++GAL ++P  R  NL  A++ + + GF  I 
Sbjct: 119 RTCECAGVDAILLPSYCSATINADAVKTSAGALHYLPVCRTDNLCQAIKFLKNSGFTIIA 178

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           LS  +      +  +    L+LGAE +G+  +      S   + + G I++LNVS AA +
Sbjct: 179 LSEKANIAYTDQDYSSPTVLVLGAEDRGISSEVLSLCDSKVKIPVLGKIESLNVSVAAGI 238

Query: 272 ALYIT 276
            +Y  
Sbjct: 239 VIYEA 243


>gi|90416564|ref|ZP_01224495.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2207]
 gi|90331763|gb|EAS46991.1| RNA methyltransferase, TrmH family, group 3 [marine gamma
           proteobacterium HTCC2207]
          Length = 231

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 12/230 (5%)

Query: 61  LNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L +   ++ +L   +     RL     L   H   ++    + +D  V   A HQG+   
Sbjct: 2   LKSAPGRVRELHVQRGRQDDRLQKIHKLAEQHGVTLQWATVKNLDDKV--NARHQGVIAL 59

Query: 118 TAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                      L  +++   N  L +VLD V DPHN+GA LRSA       ++  K  S 
Sbjct: 60  CEEGQTHDEAFLLESMEKHGNKALFLVLDGVTDPHNLGACLRSADGAGVHAVVVPKDNSV 119

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             + V+ K A GA E +P + ++NLT  L+K+   G   +G + ++++ +        + 
Sbjct: 120 GLTPVVQKVACGAAESVPLVMVTNLTRTLEKLQQAGAWVVGAAGEAEQFIYDIDLTGPLV 179

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L++GAEGKG+R  T++    +A L M G + +LNVS A  V L+      
Sbjct: 180 LVMGAEGKGIRQLTRKQCDYLAKLPMAGEVSSLNVSVATGVCLFEIVRQR 229


>gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987]
          Length = 254

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKVG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP ++I K++ +    QG+             A+
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-ESIVKVLRETETTQGVFAVCEKHEKEV--AL 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + + L+ LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 103 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|108804991|ref|YP_644928.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
           9941]
 gi|108766234|gb|ABG05116.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM
           9941]
          Length = 237

 Score =  234 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 6/235 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
             +YGV  V   L +  R + ++L +     R            V+ VP   + ++ G  
Sbjct: 3   EVVYGVRPVIEVLRSRRRAVHEVLDSTG--NREVERLAADAGVGVRRVPRGRVARLAGGG 60

Query: 109 AVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           A HQG+A    P     L+ V    + L+ VLD V DP N+GA+LR+A   +  G++  K
Sbjct: 61  A-HQGVAARVGPYPYAALEDVLGGENPLVAVLDGVTDPRNLGAVLRAADGAAASGVVVPK 119

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +   +    K+++GA EH+   R++NL  A+ +M   G          +    +   +
Sbjct: 120 DRAAGVTPAAVKASAGASEHVRLARVTNLRRAVDRMKEEGLWVYAAEPGGEN-YAEADLS 178

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +AL+LG+EG+G+R   +E    +  + M G + +LNVS AAA+ LY  +    
Sbjct: 179 GPVALVLGSEGRGVRRLVREGCDGVLSIPMLGAVSSLNVSVAAAILLYEARRQRG 233


>gi|254801702|sp|B8ZUB0|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324
 gi|254801703|sp|Q9CCW4|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324
          Length = 309

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 23  LRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALA 79
           LR NH   K+ QS   +  + T + E +   G + V   L    P+  ++  L T+    
Sbjct: 43  LRPNHPAAKRNQSSPHRPVKRTDETETVL--GRNPVLECLRAGVPATALYVALGTE-VDK 99

Query: 80  RLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RN 131
           RL           V    VP   +D+I     +HQG+AL+  P      D +        
Sbjct: 100 RLTESVMRAADVGVAILEVPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDSP 158

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AFS  GI+  +R S S +AV  ++++GA   IP  R
Sbjct: 159 PALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVAR 218

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT AL+     G + IGL  D    L+     D +A+++G+EGKGL    + +   +
Sbjct: 219 ATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEV 278

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G +++LN S A  V L       
Sbjct: 279 VSIPMAGQVESLNASVAVGVVLAEIARQR 307


>gi|283769306|ref|ZP_06342206.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
           W1219]
 gi|283104082|gb|EFC05465.1| RNA methyltransferase, TrmH family, group 3 [Bulleidia extructa
           W1219]
          Length = 237

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 12/236 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++YG + V  ++      + +L+  +       +        PV+ +    +  +V  +
Sbjct: 3   EWIYGKNVVKQSIEEG--MVLKLILQRKEDP--LFVLAQEKQIPVEILDRHKMTSLVKSD 58

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+A +       +++ +          L+++LD + DPHN+GAILR+  A   DG+
Sbjct: 59  R-HQGVAAQIRNYTIYSVEEIVTSIPKGKDGLIVMLDGIVDPHNLGAILRTCDAVGADGV 117

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +A +AK + GA++ +    ++NL+  ++ +   G+  +G + + K     
Sbjct: 118 IFKKDRSVGLNATVAKVSVGAIQTVKCASVTNLSQTIEWLKKRGYWVVGTAMEGK-DYRS 176

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +    L++G EGKG+     +      HL M G I +LN S +  + LY   N
Sbjct: 177 LKYDYPTVLVIGNEGKGISSLVMKHCDYRVHLPMVGKISSLNASVSTGILLYEIYN 232


>gi|239617976|ref|YP_002941298.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
           19.5.1]
 gi|239506807|gb|ACR80294.1| RNA methyltransferase, TrmH family, group 3 [Kosmotoga olearia TBF
           19.5.1]
          Length = 250

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 126/245 (51%), Gaps = 14/245 (5%)

Query: 49  LFLYGVHTVSAALNNPSRK--IFQLLAT--KNALARLDWDAN--LPHPFPVKTVPPQTID 102
           ++L+G + +   L    +K  I ++L T  KN    L+          + ++ VPP+ + 
Sbjct: 1   MYLHGRNVLREILKLEPKKLKIKKVLFTDQKNVDRELEELKEHTAKKGYRMEVVPPEKLF 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +  +E  HQG+ +        +L+ +      +   LL++LD + DPHN+GAI+RS+VA
Sbjct: 61  NL-SREKKHQGVVINLKEFPYTSLETLLDKIMEKKRSLLVLLDRIQDPHNLGAIIRSSVA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I T++ S   +  + K ++G +  IP +R+ N+   ++ +   GF T   + + 
Sbjct: 120 AGADGVIITEKASVEVTPAVVKVSTGLVFRIPIVRVVNMARTIETLKEEGFWTYAATMEG 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + P       DK ALI G EGKG+R   ++ +  +  + M   I +LNV+ +AA+ L+  
Sbjct: 180 E-PYYSVSFTDKAALIFGNEGKGIRHLVKKKSDYLVSIPMCEGIDSLNVAASAAIMLFEY 238

Query: 277 QNHFA 281
           +  +A
Sbjct: 239 RRQWA 243


>gi|154502841|ref|ZP_02039901.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
 gi|153796724|gb|EDN79144.1| hypothetical protein RUMGNA_00656 [Ruminococcus gnavus ATCC 29149]
          Length = 255

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 11/251 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           +    +    L + G + V  A  +  P  K+F L   ++   R        H   +  V
Sbjct: 5   RKEFDNTEHTLVIEGRNAVLEAFRSGKPIDKVFVLDGCQDGPVRTIVREAKKHDTIINFV 64

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149
             + + +I      HQG+    A      ++ +            L++LD++ DPHN+GA
Sbjct: 65  GKERLSQISVTGK-HQGVIAYAAAYEYSEVEDMLKLAEERGEDPFLILLDNIEDPHNLGA 123

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A      G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   
Sbjct: 124 IIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKEKGLWF 183

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +      +  + +      I L++G EG+G+    +E    +A + M G I +LN S AA
Sbjct: 184 VCADMGGE-SMYRLNLKGPIGLVIGNEGEGVGRLVKEKCDFVASIPMKGEIDSLNASVAA 242

Query: 270 AVALYITQNHF 280
            V  Y      
Sbjct: 243 GVLAYEIVRQR 253


>gi|323142974|ref|ZP_08077682.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
           YIT 12066]
 gi|322417247|gb|EFY07873.1| RNA methyltransferase, TrmH family, group 3 [Succinatimonas hippei
           YIT 12066]
          Length = 254

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 11/251 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTV 96
           R   +     +YGV+ V AAL     KI      K           +     +   V+T 
Sbjct: 3   RRNGKQNRELVYGVNAVEAALETAPEKIVSAFIIKGREDDKRISRIMALMNNYGIKVQTA 62

Query: 97  PPQTIDKIVGKEAVHQGLALE---TAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAI 150
              T+D+I     VHQG+ +E   T P     L+ +     +   +VLD V DP N+GA 
Sbjct: 63  MRHTLDEITD-NGVHQGVVIEMVATPPKNEGDLEELLDTLENPFFLVLDGVTDPRNLGAA 121

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA A    G+I  K  S S S    K+ASGA + +P   ++NL   L+ +     + I
Sbjct: 122 MRSAWAAGAHGVIVPKDKSASFSPAARKAASGAADVLPLFAVTNLARTLEMLKERFVRVI 181

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G+  ++   +        +A+++G+E  G+R  T+E    +  + M   +++LNVS AA 
Sbjct: 182 GMDGEASDNIYATDLTGPLAIVMGSEESGMRRLTREKCDDITKIPMAEGVESLNVSVAAG 241

Query: 271 VALYITQNHFA 281
           +AL+      +
Sbjct: 242 IALFEAVRQRS 252


>gi|254422841|ref|ZP_05036559.1| RNA methyltransferase, TrmH family, group 3, putative
           [Synechococcus sp. PCC 7335]
 gi|196190330|gb|EDX85294.1| RNA methyltransferase, TrmH family, group 3, putative
           [Synechococcus sp. PCC 7335]
          Length = 365

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 19/292 (6%)

Query: 5   SKKKSEKIFSLKDS--HYAKLR-RNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVS 58
           SK   +K    + S  H  K R   +R  +     +  SR  S  E+     +YG H V 
Sbjct: 47  SKPDWQKGDRPRKSSDHLGKSRVEGNRIRQSFSRDHLDSRFESIDEDTSPDLIYGRHAVE 106

Query: 59  AALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           AA+    R + +L        ++  R        +   V  V    + ++  + A HQG+
Sbjct: 107 AAIE-AGRSLNRLWVNAKLHYDSHFRPLIATAKANGSVVDEVENVRLSQMT-QGASHQGI 164

Query: 115 ALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             + +      L+ +           +++  D + DPHN+GAI+RSA A    GI+  +R
Sbjct: 165 VAQVSAYEYVDLEVLVQQAKNKARRPVIVAADGITDPHNLGAIIRSAEAIGAQGIVIPQR 224

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   ++ +AK ++GALE+IP  R+ NL  AL+ + S  F   GL++++ + +     + 
Sbjct: 225 RAVGVTSTVAKVSAGALENIPIARVINLGRALEYLKSNSFWIYGLTAEAAQSIHTTDFSA 284

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + L++GAEG GL    Q     +  + + G   +LN S A  +ALY     
Sbjct: 285 PVVLVVGAEGSGLSLSVQNLCDQLVSIELSGKTPSLNASVATGMALYEIYRQ 336


>gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
 gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
          Length = 265

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 117/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+        S   +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHES---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 RNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712]
          Length = 319

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 125/283 (44%), Gaps = 22/283 (7%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKS-------RHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +  A+ R+ H+ Y+   +  +++       R   + ++  + G + V  AL +       
Sbjct: 36  TPRAEDRKGHKAYRVSNAMARQAAKRKPVARRGGKGQSEMVVGRNPVFEALRDGV-PAST 94

Query: 71  LLATK--NALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           L   +  +   R+    NL        +   P   +D++      HQGL L+  P     
Sbjct: 95  LYVQQFIDNDERVREALNLATGRGNIHIMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAH 153

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            + +        +  L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K
Sbjct: 154 PEDLVTAAFDDHDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWK 213

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEG 237
           +++G     P  R +NLT  L++    G   +GL++D  + + + E     + +++G+EG
Sbjct: 214 TSAGTAARTPVARATNLTRCLEQYQKAGVTVVGLAADGDREVHELEELGGPVVIVVGSEG 273

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KGL     ET   +  + MPG  ++LN   AA V LY      
Sbjct: 274 KGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 316


>gi|126729168|ref|ZP_01744982.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
           E-37]
 gi|126710158|gb|EBA09210.1| RNA methyltransferase, TrmH family, group 3 [Sagittula stellata
           E-37]
          Length = 274

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/248 (38%), Positives = 141/248 (56%), Gaps = 8/248 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  S  E ++L+G H V  AL NP R   +L+ T NA  +L  DA        +  
Sbjct: 27  KEQAKRASAAETVWLFGHHAVRDALLNPRRVKLRLILTPNAAEKLG-DAVAEAGMEPEIS 85

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152
            P+     +  ++VHQG ALE  PL    L+ V      +  L++LD V DPHN+GAILR
Sbjct: 86  DPRRFAAPLDPQSVHQGAALEVKPLDWGKLEDVALSGEGALRLVLLDRVTDPHNVGAILR 145

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I T+ ++  E+  LAK+ASGALE  PY+R  NL D +  +   G+  +GL
Sbjct: 146 SAEVFGAQAVIGTRHHAAPETGALAKTASGALERQPYLRERNLADTITALQGIGYIVLGL 205

Query: 213 SSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             +++  +E  +   ++  IAL+LGAEG GLRPKT+ET  ++  +       +LNVSNAA
Sbjct: 206 DGEAETTIEDAVEGKRDRPIALVLGAEGPGLRPKTRETVDALVKIPFAREFGSLNVSNAA 265

Query: 270 AVALYITQ 277
           AVALY  +
Sbjct: 266 AVALYAVR 273


>gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HTCC2255]
 gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HTCC2255]
          Length = 264

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/260 (36%), Positives = 141/260 (54%), Gaps = 11/260 (4%)

Query: 27  HRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
            R  KK     +K R  S    + ++L+G+H V  AL NP R+  +L+ TKNA  +L   
Sbjct: 3   PRSKKKPLWIVEKERQKSAGSADTVWLFGLHAVRDALENPLRERIRLMVTKNASDKLS-S 61

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLD 139
           + +      + + P+  +  +  ++VHQG ALE  PL    +  V          L++LD
Sbjct: 62  SIITSGIDAEIIDPRKFNPPIDPQSVHQGAALEVMPLDWGNMSTVCAPRNDKKARLVILD 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DPHN+GAILRSA  F    +I T R S  E+  LAK+ASGALE  PY+R+ NL  ++
Sbjct: 122 RVTDPHNVGAILRSAEVFGARAVIATARNSAPETGALAKTASGALERQPYLRVRNLATSI 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           + +   G+  +GL   +K  ++      +N  +A++LGAEG GLR  T++T   +  +  
Sbjct: 182 KSLQEMGYYVVGLDGTAKNSIDDIAELHQNSPLAIVLGAEGPGLRELTKQTCDELVKIDY 241

Query: 257 PGIIKALNVSNAAAVALYIT 276
                +LNVSNA AVALY T
Sbjct: 242 AATFGSLNVSNATAVALYAT 261


>gi|217962043|ref|YP_002340613.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
 gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
 gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
 gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
          Length = 254

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+             A+
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + + L+ LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 103 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 RNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|146296390|ref|YP_001180161.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409966|gb|ABP66970.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 253

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  ALN+ S +I ++     TK+       +        VK V    IDK+  K
Sbjct: 4   IEGKNPVKEALNS-STQITEVYISNTTKDKSISEIINLCKQKGIVVKFVDKSKIDKM-SK 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D +            L++LD + DPHN G+I+RSA      
Sbjct: 62  TKNPQGVIAIAQEYKYWDIDDLLLEAANKGEKPFLVLLDEITDPHNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GIIT  R S   +  + K+++GA+EHI   R+ NL   +  +   G       ++++K +
Sbjct: 122 GIITEARNSCPITPTVEKASAGAIEHIKVARVVNLRRTIDSLKEKGVWVYAADNNAEKFV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   I +I+G+EGKG+    +E A  +  +   G I + N S AA +  +      
Sbjct: 182 YDCDFKIPICIIIGSEGKGISRLVKEGADFLVKIPQKGKINSYNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            +
Sbjct: 242 MQ 243


>gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4]
          Length = 281

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 125/276 (45%), Gaps = 20/276 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN + +K  ++I S+K+          + +KK+ +   + +         + G H V  A
Sbjct: 24  MN-VKEKSMKRIDSVKNEQV-------KGWKKLHTKKGRDK----AGRFLIEGFHLVEEA 71

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      I  +L T+  +  L W+    +   +  V PQ + +I   E   QG+A   A 
Sbjct: 72  LK-AKFHIEVILMTEQTVLPLTWEV---YENDIIIVSPQVLKEISETE-TPQGIAAVCAI 126

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P++  +      +++D V DP NIG ++R+A A    G++  +      ++ + +++
Sbjct: 127 PAPPSMTTLSGQ--FLLIDRVQDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRAS 184

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P IR  +L + ++K+        G S              + ALI+G EG+G+
Sbjct: 185 QGSIFHMPVIR-GSLIEWVEKLKEKNIPVFGTSLTEASSYTAIEPQPEFALIVGNEGEGV 243

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + +  E +    ++ + G  ++LNV+ A  + LY  
Sbjct: 244 QSELLEGSDQNIYIPIYGQAESLNVAVATGILLYYL 279


>gi|157804038|ref|YP_001492587.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
 gi|157785301|gb|ABV73802.1| elongation factor Tu [Rickettsia canadensis str. McKiel]
          Length = 239

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 133/241 (55%), Gaps = 7/241 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      D +  L      + V  
Sbjct: 2   QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENVLCTREIF---DANKKLIGTRSYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +   HQG+A +  P+ S  L+ +  +N +  + +LD + D  NIGAI+RSA 
Sbjct: 59  DILSKLL-ENQTHQGIAAKVRPIFSYNLEDIDIKNPKCKITILDQITDTQNIGAIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + I+  +  +P+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  
Sbjct: 118 AFDINAILLPQDNAPNESGGIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +      +   +KIAL+ G+E KG+R   ++T   +A + +   +++LNVSNAA++  ++
Sbjct: 178 ANDYFTNKFITNKIALVFGSEDKGMRKLVEKTCDYLAKIPISKRVESLNVSNAASIIFHL 237

Query: 276 T 276
            
Sbjct: 238 L 238


>gi|212694905|ref|ZP_03303033.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
 gi|237727137|ref|ZP_04557618.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
 gi|212662465|gb|EEB23039.1| hypothetical protein BACDOR_04442 [Bacteroides dorei DSM 17855]
 gi|229433993|gb|EEO44070.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 255

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 15/247 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHP-FPVKTVPPQTID 102
            +N  ++GV  V  A+    R+I ++L  K+  + L  +  A L +   PV+ VP + I+
Sbjct: 3   EKNEMIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERIN 61

Query: 103 KIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  K   HQG+    + +         P L     + L ++LD + D  N GAI R+  
Sbjct: 62  RITRK--NHQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D II   + S S +A   K+++GAL  +P  R  +LT+ ++ +   GF+ +  +  
Sbjct: 120 CAGADAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y 
Sbjct: 180 GDYDYTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYE 239

Query: 276 T--QNHF 280
              Q  F
Sbjct: 240 AVKQRGF 246


>gi|189467068|ref|ZP_03015853.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
           17393]
 gi|189435332|gb|EDV04317.1| hypothetical protein BACINT_03451 [Bacteroides intestinalis DSM
           17393]
          Length = 246

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     + L ++LD V D  N GAI R+   
Sbjct: 63  ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKTTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VKQR 244


>gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426]
          Length = 251

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 120/268 (44%), Gaps = 21/268 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K++         + +KK+    +K R   +     L G H V  A+ + +  + 
Sbjct: 2   KRIESPKNARV-------KQWKKL--LTKKGRD--ETGLFLLEGFHLVEEAIKSNA-PLV 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+  +       W+       PV  V    +  I   E   QG+A      LS  L+ V
Sbjct: 50  ELIVDERTAVPPGWNVT---GVPVTIVTEAVMRAISSTE-TPQGIAA-VCRQLSTELEGV 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +   +++D V DP N+G ++R+A +   D +I  +  +   +  + ++  G+L H+P 
Sbjct: 105 KTA---LLIDAVQDPGNLGTMIRTADSAGIDAVILGEGCADLYNPKVVRATQGSLFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  +L   + +    G    G + ++        ++   AL++G EG G+RP      T
Sbjct: 162 VK-GDLAQWIARFKEQGIPVYGTALENAVDYRTVPQSSSFALLVGNEGSGVRPDLLRLTT 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AA + LY  Q
Sbjct: 221 ENVYIPIYGRAESLNVAVAAGILLYSLQ 248


>gi|313680591|ref|YP_004058330.1| RNA methyltransferase, trmh family, group 3 [Oceanithermus
           profundus DSM 14977]
 gi|313153306|gb|ADR37157.1| RNA methyltransferase, TrmH family, group 3 [Oceanithermus
           profundus DSM 14977]
          Length = 237

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 11/235 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +++YG + V  A       + ++L  +    +           P + VP   +D++V + 
Sbjct: 1   MWIYGRNPVLEAAREGG--VRRVLVARGVERKFLKKLEDA-GIPYELVPRIELDQLV-RT 56

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+  E   +     DA            L+++LD + DP N GAILRSA A    G
Sbjct: 57  THHQGIVAEIEAIRLAEPDAPLRLAHKRGELPLVVLLDGITDPRNYGAILRSAEALGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +++  R S   S V  K+++GA  H+P +++ NL   ++++   G    GL+ + +  LE
Sbjct: 117 VVSETRRSAPLSPVAVKASAGAARHLPVVQVPNLPRYIEELKEAGVWVYGLAGEGEVALE 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +      +A ++G+EG GLR   ++    + H+ + G   +LN + AA +A++  
Sbjct: 177 EADYERPLAWVIGSEGSGLRRLVRDRCDQLVHIPLRGRTPSLNAAVAAGIAVHWA 231


>gi|304391896|ref|ZP_07373838.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
           R2A130]
 gi|303296125|gb|EFL90483.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Ahrensia sp.
           R2A130]
          Length = 287

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/245 (47%), Positives = 161/245 (65%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIV 105
           EN++LYGVHTV AAL NP RK+ QLLAT + + RLD +A   HP   ++      +D++V
Sbjct: 44  ENVWLYGVHTVDAALRNPKRKVRQLLATDSGMERLDHNALAQHPDLDIRIGKTADLDRMV 103

Query: 106 GKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             ++VHQGL L+  PLL      L    + Q+++VLD V DPHN+GAILRSAVA     +
Sbjct: 104 TADSVHQGLLLDCEPLLREEPKDLYDFADDQIILVLDQVTDPHNVGAILRSAVAMGVKTV 163

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE- 221
           + T R+  SE+ VLAKSASGA++ +  + I NL+ +L ++    F  IGL S+   PLE 
Sbjct: 164 LVTSRHQSSETGVLAKSASGAVDMVDMLAIRNLSKSLDELREHRFAVIGLDSEG--PLEV 221

Query: 222 ----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                ++K  K+AL+LGAEGKGLR +T+E  T++A L MPG IK+LNVSNAAA++LY+ +
Sbjct: 222 QETLDDLKPSKVALVLGAEGKGLREQTREACTALARLDMPGPIKSLNVSNAAALSLYLVR 281

Query: 278 NHFAK 282
               K
Sbjct: 282 AAIKK 286


>gi|58038971|ref|YP_190935.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
 gi|58001385|gb|AAW60279.1| 23S rRNA methyltransferase [Gluconobacter oxydans 621H]
          Length = 282

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 138/232 (59%), Gaps = 6/232 (2%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
             ++YG H V AAL NP R I   LAT+ A A  +  +  P     + V  + +D++  +
Sbjct: 54  GYWIYGHHAVQAALANPERVIHDFLATREAAASFENASRKP-----QIVDRERLDRLCER 108

Query: 108 EAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +AVHQG+ L   PL +  + D V     ++VLD V DP NIGAILRSA AF    ++   
Sbjct: 109 DAVHQGVCLRVEPLETLAIPDIVERKGPVLVLDQVTDPRNIGAILRSAAAFGAAALLVQD 168

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R +P ES  +AK+ASGAL+ +P +R  NL+ ALQ + +  F  +GL +   +   +    
Sbjct: 169 RNAPQESGAMAKAASGALDVVPILREVNLSRALQALQAENFWVVGLDAGGTRLDGKSFAG 228

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++AL+LGAEG GLR  T+ET   +A ++MPG +++LNVSNAAAVALY    
Sbjct: 229 RRVALVLGAEGAGLRRLTRETCDEIASVYMPGDMESLNVSNAAAVALYELVR 280


>gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)]
 gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor
           A3(2)]
          Length = 314

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 121/279 (43%), Gaps = 13/279 (4%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--Q 70
           ++  H  +   N +  +      Q+ R   +  +  + G + V  AL    P+  ++  Q
Sbjct: 37  MRKGHAKQRAANAKARRTTGGRPQQRRGGGRSTSELVVGRNPVYEALREGVPASTLYVQQ 96

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
            +     +      A       +   P   +D++      HQGL L+  P      + + 
Sbjct: 97  FIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLV 155

Query: 131 NS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            +        L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G 
Sbjct: 156 AAAHDEGIDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGT 215

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242
               P  R +NLT AL++    G   +GL++D +  L +    +  + +++G+EGKGL  
Sbjct: 216 AARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVVIVVGSEGKGLSR 275

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ET      + MPG  ++LN   AA + LY      +
Sbjct: 276 LVGETCDFRVRIPMPGGAESLNAGVAAGIVLYEAARRRS 314


>gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 249

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 12/248 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102
            +  + YGVH+V + L     ++  L   K     RL     L       V+     +++
Sbjct: 2   AKQEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVA 156
           K+ G    HQG+     P   L    LD + +   + LL+ LD V DPHN+GA +R+A A
Sbjct: 62  KLAGL-PFHQGVVAAVRPHPVLNEQDLDQILSETPNALLLALDQVTDPHNLGACIRTAAA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSD 215
                +I  +  + S +    K A+G  E + +I+++NL   L  +      + IG   D
Sbjct: 121 MGVQAVIVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180

Query: 216 SKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               PL++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY
Sbjct: 181 ESALPLQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALY 240

Query: 275 ITQNHFAK 282
                 ++
Sbjct: 241 EACRQRSE 248


>gi|145296637|ref|YP_001139458.1| hypothetical protein cgR_2545 [Corynebacterium glutamicum R]
 gi|140846557|dbj|BAF55556.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 313

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 130/292 (44%), Gaps = 27/292 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++ +    +H  KL R  RD         + RH  +     + G + V   L
Sbjct: 34  KGPTPKAEDRTYHA--AHKRKLERERRD---------RGRHQRE-MPELVVGRNPVLECL 81

Query: 62  NNPSRKIFQLLATKNA--LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALE 117
            +       L   + A    RL    +       PV  V    +D++ G   +HQG+ L 
Sbjct: 82  -HARVPATALYVAEGAANDERLSEAVHTAAGRNIPVLEVNKLELDRMTG-NGMHQGIGLA 139

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +  +       +   + ++LD++ DP N+GA++RS  AF  +G+I  +R S 
Sbjct: 140 IPPYEYADVHDLIANAATSKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSA 199

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           S +AV  ++++G    +P  + +N+T  +++    G+Q +GL +     L+     D + 
Sbjct: 200 SVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVGLDAGGDHTLDTYDGTDNVV 259

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280
           +++G+EGKG+    +E   ++  +   G +++LN S AA V L  +  Q   
Sbjct: 260 IVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRI 311


>gi|114327047|ref|YP_744204.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315221|gb|ABI61281.1| 23S rRNA Gm2251 methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 441

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/233 (36%), Positives = 135/233 (57%), Gaps = 2/233 (0%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++L+G+H V AAL NP+R++ +LL T+ A A L      P     +      +D+++G E
Sbjct: 208 VWLHGLHAVEAALRNPARRLRRLLLTEEAEATLAERLPPPWALVAERTERAHMDQLLGTE 267

Query: 109 AVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +VHQG+AL    L SP L  +  +    ++VLD V+DP N+GAILRSA AF    +I   
Sbjct: 268 SVHQGIALLADKLPSPPLGEILAQRPGPVLVLDQVSDPRNVGAILRSAAAFQACCVIVQD 327

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R +P ES  +AK+ASGAL+ +P +R+ N+   L  + +     +GL ++        +  
Sbjct: 328 RNAPEESGTMAKAASGALDRLPMLRVVNIARTLAALKAADLWVVGLDAEGAPLSGPALGK 387

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++AL++GAEG GLR  T+E+   +  L M   +++LNVS A A+ALY    +
Sbjct: 388 RRVALVMGAEGDGLRRLTRESCDEIVSLAMAEGMESLNVSVATAIALYEISRN 440


>gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
 gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
          Length = 265

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKQ----GLFFVEGFHLVEEALKAG--IVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENSVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|159045111|ref|YP_001533905.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157912871|gb|ABV94304.1| RNA methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 263

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 10/240 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + ++L+G+H V  AL NP+R   +L+ T+NA  +L          P +   P+     + 
Sbjct: 22  QTVWLFGLHAVRDALENPARTKLRLVVTRNAADKLAEAIAGAGIAP-EIADPRRFPAPLD 80

Query: 107 KEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             +VHQG ALE  PL    L             L+++LD V DPHN+GAILRSA  F   
Sbjct: 81  PGSVHQGAALEVKPLAWGPLAETVLTGPADRPPLVVLLDRVTDPHNVGAILRSAEVFGAA 140

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I+T R +  E+  LAK+ASGALE  PY+R+ NL + ++++ + GF  +GL   ++  +
Sbjct: 141 AVISTARSAAPETGALAKTASGALERQPYLRVRNLAETMEELRAMGFVLLGLDGTAEDTI 200

Query: 221 ---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +++ +  IAL+LGAEG GLR KT+ET   +  +       +LNVSNAAAVALY  +
Sbjct: 201 GTALRDLTDRPIALVLGAEGPGLRDKTKETCNRLVKIPFARDFGSLNVSNAAAVALYACR 260


>gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN]
 gi|221229566|ref|YP_002502982.1| putative methyltransferase [Mycobacterium leprae Br4923]
 gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae]
 gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923]
          Length = 278

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/269 (30%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 23  LRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALA 79
           LR NH   K+ QS   +  + T + E +   G + V   L    P+  ++  L T+    
Sbjct: 12  LRPNHPAAKRNQSSPHRPVKRTDETETVL--GRNPVLECLRAGVPATALYVALGTE-VDK 68

Query: 80  RLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RN 131
           RL           V    VP   +D+I     +HQG+AL+  P      D +        
Sbjct: 69  RLTESVMRAADVGVAILEVPRTYLDRITNNH-LHQGIALQVPPYHYVHSDDLLAAATDSP 127

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LL+ LD+++DP N+GAI+RS  AFS  GI+  +R S S +AV  ++++GA   IP  R
Sbjct: 128 PALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVAR 187

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +NLT AL+     G + IGL  D    L+     D +A+++G+EGKGL    + +   +
Sbjct: 188 ATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEV 247

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G +++LN S A  V L       
Sbjct: 248 VSIPMAGQVESLNASVAVGVVLAEIARQR 276


>gi|153808238|ref|ZP_01960906.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
 gi|149129141|gb|EDM20357.1| hypothetical protein BACCAC_02526 [Bacteroides caccae ATCC 43185]
          Length = 247

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     +   ++LD V D  N GAI R+   
Sbjct: 63  ITRK--NHQGVVAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPARGSASVNADAVKTSAGALHTLPVCREQNLRATLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|126725688|ref|ZP_01741530.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2150]
 gi|126704892|gb|EBA03983.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
           bacterium HTCC2150]
          Length = 266

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/258 (39%), Positives = 143/258 (55%), Gaps = 13/258 (5%)

Query: 31  KKMQSFNQKSRHTSQPE--NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           KK     +K R     +   ++L+G+H V  AL NP R++ +L+ TKNA  RL  DA   
Sbjct: 4   KKPTWIVEKERQKRAEDALTVWLFGIHAVRDALLNPKRELLKLVVTKNAADRLA-DAIEQ 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDP 144
                +   P+     +   +VHQG ALE  PL    L ++         L+ LD V DP
Sbjct: 63  SGITPEICEPRKFSAPLDAGSVHQGAALEVKPLKWTDLQSIAIDAGPHGRLLFLDRVTDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAILRSA       +I TKR +  E+  LAK+ASGALE  PY+RI NL D +++M +
Sbjct: 123 HNVGAILRSAEVLGAAAVIATKRNAAPETGALAKTASGALERQPYVRIRNLADTMEEMKA 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            G+  +GL  +++  +E  I +        IAL+LGAEG GLR KT+ T  ++  +   G
Sbjct: 183 LGYILLGLDGEAEDTMETVIASTLANGPRPIALVLGAEGPGLRDKTKATCDALMRIDSAG 242

Query: 259 IIKALNVSNAAAVALYIT 276
              +LNVSNAAAV+LY +
Sbjct: 243 AFGSLNVSNAAAVSLYAS 260


>gi|330991641|ref|ZP_08315592.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329761660|gb|EGG78153.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 263

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 103/258 (39%), Positives = 140/258 (54%), Gaps = 5/258 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +HR          +   ++     +LYG H V AAL NP+RK+ QLL T  A   L   +
Sbjct: 8   SHRSAPDRGGRGGRGAVSAPRGTCWLYGQHAVQAALENPARKLRQLLVTAEAQETLA--S 65

Query: 86  NLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVN 142
            L   FP++ V      +D + G +AVHQG+AL    L  P LD  +     ++VLD V 
Sbjct: 66  RLEGGFPIQPVRTERAALDTLCGPDAVHQGMALLVDVLAQPDLDTVLEQPGPVLVLDQVT 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP NIGAILRSA AF    ++   R +P E+  LA++ASGALE +P IR+ NL+  L  +
Sbjct: 126 DPRNIGAILRSAAAFGAVAVVMQDRNAPEETGTLARAASGALEIVPLIRVVNLSRVLDAL 185

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            S G   +GL +             ++AL+LGAEG GLR  T+E    +A L M   +++
Sbjct: 186 KSRGLWVVGLDAGGGVLDGAAFHQRRVALVLGAEGAGLRRLTREHCDEIAGLAMSSRMES 245

Query: 263 LNVSNAAAVALYITQNHF 280
           LNVSNAAAVALY    H 
Sbjct: 246 LNVSNAAAVALYEMFRHR 263


>gi|298245607|ref|ZP_06969413.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
           racemifer DSM 44963]
 gi|297553088|gb|EFH86953.1| RNA methyltransferase, TrmH family, group 3 [Ktedonobacter
           racemifer DSM 44963]
          Length = 249

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 113/246 (45%), Gaps = 14/246 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTID 102
           + +++G + +   L +  RK+ ++L  + +                   PV+TVP   +D
Sbjct: 2   SEYIWGRNPIMETLQS-VRKVKRILLAEGSKREGGTLNTIIQEAQKRQIPVETVPRARLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K AVHQG     A     + D +            L++LD + D +N+G++LR+A 
Sbjct: 61  QM-SKGAVHQGCVAVVAEREYASTDDILARAAERNEPPFLLLLDSIQDVNNLGSLLRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G+I  +  +   +A + K+++GA EHI   R +NLT  +  +       +GL+ +
Sbjct: 120 AAGVHGVIIPEHRAAEVNATVVKTSAGATEHIMIARETNLTRTIDYLKQQNIWIVGLAGE 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 Q      +A+++G EGKG+    +E    +  L M G I +LN + A ++ LY 
Sbjct: 180 GDTLYTQANLTGALAVVVGNEGKGMGRLVREHCDVLIKLPMHGYINSLNAAVAGSITLYE 239

Query: 276 TQNHFA 281
                +
Sbjct: 240 ALRQRS 245


>gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 265

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++  +P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|312113910|ref|YP_004011506.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219039|gb|ADP70407.1| RNA methyltransferase, TrmH family, group 3 [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 310

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/265 (35%), Positives = 141/265 (53%), Gaps = 9/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           +++   + +  ++ ++  +     +  E   LYG+H+V AAL NP R+I     T+NA A
Sbjct: 43  FSRFGDSRKSARRPKTAGESFAKLAAGET--LYGLHSVEAALANPKRRIRHAWLTENAAA 100

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQL 134
           RL    +           P  +D + G  AVHQG  L+  PL  P LD   +        
Sbjct: 101 RLAPLLD-ARKIAATLALPADLDALTGPGAVHQGAVLQVEPLAQPGLDDFLDALGDAPAT 159

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++LD V DPHN+GA+LRSA AF    +I   R+SP  +A LAKSASG LEH+P I + N
Sbjct: 160 VVILDQVTDPHNVGAVLRSAAAFGIGALIVQDRHSPPLTAALAKSASGGLEHVPVIEVVN 219

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAH 253
           L   L+K+    F  IG  S+  +  +  +    ++A + GAE KGLR   +E   ++A 
Sbjct: 220 LARVLEKLKERDFLCIGFDSEGAQRFDAALAGGRRVAFVFGAEDKGLRRLVREGCDAIAA 279

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           L  PG IK+LN+SNAAA+  +    
Sbjct: 280 LSAPGPIKSLNISNAAAIVFHARAQ 304


>gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
 gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
 gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
 gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
          Length = 265

 Score =  234 bits (597), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENSVPVYGTALENGAPYGEVTPAGSFALIVGNEGSGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|310829598|ref|YP_003961955.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308741332|gb|ADO38992.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 283

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           KK+++    ++ H  + ++       ++    + +     +   + G + V  AL +  +
Sbjct: 2   KKNDR-KKTRNDHGREQKKESYHRADLKRRETRRQDDEGDDRFVIVGKNPVMEALRSEQQ 60

Query: 67  KIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
               L+   N    L   A         V++V    ++ +   +  HQG+A   AP    
Sbjct: 61  MDKLLILKDNKDHVLGDLAEKARRRGIVVQSVEKIKLEGLADGQ-PHQGVAAMMAPFPYS 119

Query: 125 TL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           ++       DA     L+++LDH+ DPHN+GAI+RSA      G+I  KR S S +AV  
Sbjct: 120 SMEDVLAKADAKGEEPLVVILDHLTDPHNLGAIIRSANLCGVHGVIIPKRRSASLTAVSV 179

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K++SGA+ H P +++ NLT  + ++ + GF  +    D   P  +     K+A+I+G EG
Sbjct: 180 KASSGAVAHTPIVKVGNLTQCIDELKAKGFWIMAADMDGA-PYYKNDFKGKLAIIIGNEG 238

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALN 264
           KG+ P  ++       + + G I + N
Sbjct: 239 KGISPNVKKQCDYSVSIPLYGDIDSFN 265


>gi|299135854|ref|ZP_07029038.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX8]
 gi|298601978|gb|EFI58132.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium sp.
           MP5ACTX8]
          Length = 267

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 106/245 (43%), Gaps = 14/245 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTID 102
             LYG+H V  A+    R++  +   +   AR D       D        V T     + 
Sbjct: 2   DVLYGLHPVEEAIRAGMRQLDHVSVAREREARRDARLDAVLDLCRAAGIRVNTESRDQLT 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAV 155
           +    +A HQG+           L+ + N+          + LD V DPHN+GA+LRSA 
Sbjct: 62  RHAKTDA-HQGIVAFLRERKFLALEDLLNAPPGPTGFRFFLALDGVEDPHNLGALLRSAD 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               DG+I  +R S   SA +AKS++GA EH+   ++ N+T AL+ M       +GL   
Sbjct: 121 GSGIDGVIVPERRSAPLSATVAKSSAGASEHVRIAQVVNITRALETMKKHNVWIVGLDER 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                          L+LG+EG GL    + T   +  + M G + +LNVS A AV +Y 
Sbjct: 181 GTPDYTDFDFRQDCCLVLGSEGSGLHELVKRTCDHLLRIPMAGSVSSLNVSVAGAVVMYE 240

Query: 276 TQNHF 280
                
Sbjct: 241 AMRQR 245


>gi|260576862|ref|ZP_05844845.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
 gi|259020899|gb|EEW24212.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter sp. SW2]
          Length = 265

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 92/238 (38%), Positives = 141/238 (59%), Gaps = 8/238 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  +  E ++L+G+H V  AL NP+R+  +L+ TKNAL +L+ DA        + V
Sbjct: 14  KERAKRAAASETVWLFGLHAVRDALLNPAREKLRLVLTKNALDKLE-DAVAACGMAPEVV 72

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152
            P+  D  + + +VHQG AL+  PL    L  V      + L+++LD V DPHN+GA+LR
Sbjct: 73  EPRQFDVPIDEGSVHQGAALQVRPLNWGKLADVCISGTGAPLVVLLDRVTDPHNVGAVLR 132

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  F    +I   R+S  E+  LAK+ASGALE  PY+R+ NL DA+Q++ + G+  +GL
Sbjct: 133 SAEVFGARAVIAPARHSAPETGALAKTASGALERQPYLRVVNLADAMQELQAMGYVLLGL 192

Query: 213 SSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +++  L Q +       I L+LGAEG GLR +T+ET   +  +   G   +LNVSN
Sbjct: 193 DGEAEVTLAQAVAEAGTRPIGLVLGAEGPGLRDRTRETCDRLVRIPAQGGFGSLNVSN 250


>gi|78485830|ref|YP_391755.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
           XCL-2]
 gi|78364116|gb|ABB42081.1| RNA methyltransferase TrmH, group 3 [Thiomicrospira crunogena
           XCL-2]
          Length = 244

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           LYG+H +   L      I+ L   K   N   +   D         +  P    +K+   
Sbjct: 6   LYGIHAIEKFLKQSPHLIYSLTFQKGPVNKRVQSLMDQAKRMGIAYQLEPKSFFNKL--- 62

Query: 108 EAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           E VHQG+    A            L    ++ L + LD V DPHN+GAILR+A A     
Sbjct: 63  EGVHQGVVATVAKEADLNETDLKALLEAESNPLFLFLDEVQDPHNLGAILRTADATGVTA 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  S   +A + K A GA E +  + +SNL   ++++   G    GL+ ++   L 
Sbjct: 123 VVIPKHNSVGVNATVRKVACGAAETVKVVVVSNLVRTIKELQQAGLWVTGLAGETNTTLY 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q      + L++GAEG GLR  T+ET   +A + M G I++LNVS A  V LY       
Sbjct: 183 QLDFKGAVGLVMGAEGSGLRKLTRETCDHLAAIPMAGSIESLNVSVATGVVLYEVYRQRL 242

Query: 282 K 282
           +
Sbjct: 243 Q 243


>gi|302872439|ref|YP_003841075.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 253

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  +      +        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIELCRQSGVVVKFVDKNKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+            D +         +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAQEFEYCDTDDILFEARQREEAPFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       + S KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAIEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G I + N S AA +  +      
Sbjct: 182 YECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 248

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 111/241 (46%), Gaps = 12/241 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V   L     ++  L   K     RL     L       V+     +++K+ G +
Sbjct: 8   YGVHSVETLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAG-Q 66

Query: 109 AVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P   L    LD +     + LL+ LD V DPHN+GA +R+A A     +
Sbjct: 67  PFHQGVVAAVRPHPTLNEKDLDQLMQQSPNALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSSDSKK-PL 220
           I  +  + S +    K A+G  E + +I+++NL   L  +      + IG   D K  P+
Sbjct: 127 IVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHTRVIGTMLDEKALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +Q   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QQCDFSGPVVIVMGAEDTGLRPITQSQCDQTVYIPMSGDLQSLNVSVATGMALYEACRQR 246

Query: 281 A 281
            
Sbjct: 247 N 247


>gi|331090785|ref|ZP_08339632.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330399893|gb|EGG79552.1| RNA methyltransferase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 246

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E+L + G + V  A  +     K+F L   ++   R        H   ++ V  + +D+
Sbjct: 3   EESLIIEGRNAVIEAFRSGKTIDKVFVLDGCQDGPVRTIVREAKKHDTILQFVTKERLDQ 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  +   HQG+    A      ++ +            + +LD++ DPHN+GAI+R+A  
Sbjct: 63  L-SETGKHQGVVAHAAAYEYAEVEDILALAKEKGEDPFIFILDNIEDPHNLGAIIRTANL 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G   +      
Sbjct: 122 AGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCADMGG 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  + +      I L++G EG G+    +E    +A + M G I +LN S AA V  Y  
Sbjct: 182 ET-MYRLNLTGPIGLVIGNEGTGVGRLVKEECDFVASIPMKGDIDSLNASVAAGVLAYEI 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           radioresistens SK82]
 gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
 gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           radioresistens SK82]
 gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
          Length = 251

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHAVESLLELEPERVLTLFTLKGREDQRLQKILELAEPFGISVQKASRDSLEKLAGL- 66

Query: 109 AVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P   +    L+ +       LL+ LD V DPHN+GA +R+A A     +
Sbjct: 67  PFHQGVVAAVRPHPVMNEKDLEQLLEQTPDVLLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG-FQTIGLSSDSKK-PL 220
           I  +  S S +    K A+G  E + +I+++NL   L +M      + IG   D +  PL
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQMKEHSQVRVIGTMLDEQALPL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +Q      I +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QQCDLTGPIVIVMGAEDTGLRPITQAQCDHKVYIPMAGNLQSLNVSVATGMALYEACRQR 246

Query: 281 A 281
            
Sbjct: 247 N 247


>gi|160891918|ref|ZP_02072921.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
 gi|270296416|ref|ZP_06202616.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
 gi|317480388|ref|ZP_07939488.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
 gi|156858396|gb|EDO51827.1| hypothetical protein BACUNI_04376 [Bacteroides uniformis ATCC 8492]
 gi|270273820|gb|EFA19682.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D20]
 gi|316903466|gb|EFV25320.1| RNA methyltransferase [Bacteroides sp. 4_1_36]
          Length = 246

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 13/243 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKI 104
           +  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I+++
Sbjct: 5   SEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINRV 63

Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             K   HQG+    + +         P L     + L ++LD + D  N GAI R+    
Sbjct: 64  TRK--NHQGVIAFISSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCECA 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           + D +I   R S S +A   K+++GAL  +P  R  +L + LQ + + GF  +  +    
Sbjct: 122 AVDAVIIPARNSVSVNADAMKTSAGALHTLPVCREHSLKETLQFLKNSGFHIVAATEKGD 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +      + +I+GAE KG+             + M G I++LNVS AA + +Y   
Sbjct: 182 YDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEAV 241

Query: 278 NHF 280
              
Sbjct: 242 KQR 244


>gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 322

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 13/262 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDA 85
           D ++MQ      R    PE +   G + V   L    P+  ++  +  + +   +     
Sbjct: 62  DQRQMQRAAAIRRADDSPEMVL--GRNPVVECLRAGVPATALYVAVGAETDDRLKESVQR 119

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVL 138
                  +  VP   +D++     +HQG+AL+  P      D +       +   LL+ L
Sbjct: 120 AADAGISILEVPRTDLDRMSA-NGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVAL 178

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D++ DP N+GA++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  
Sbjct: 179 DNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRT 238

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+   S G Q +GL +     L+       + +++G+EGKGL    +ET  S+  + M G
Sbjct: 239 LKDWQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAG 298

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            +++LN S AA V L       
Sbjct: 299 EVESLNASVAAGVVLSEIARQR 320


>gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
 gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
 gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
 gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
          Length = 265

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++  +P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGSGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|225377343|ref|ZP_03754564.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
           16841]
 gi|225210874|gb|EEG93228.1| hypothetical protein ROSEINA2194_02990 [Roseburia inulinivorans DSM
           16841]
          Length = 246

 Score =  233 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 108/245 (44%), Gaps = 11/245 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E   + G + V  A  +     K+F L   ++   R        H   +  V  + +D++
Sbjct: 4   EEQKIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREARKHDTIINFVDKERLDQL 63

Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A              +       + +LD++ DPHN+GAI+R+A   
Sbjct: 64  -SETKKHQGVIAVAAAYEYAEVEDILKNAEEKGEPPFIFILDNIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GA+ + P  +++NLT A++++   G   +       
Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGAINYTPVAKVTNLTAAIKELKEKGLWFVCADM-GG 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + +      I L++G EG+G+    +E    +A + M G I +LN S AA V  Y   
Sbjct: 182 TEMYKLDLKGPIGLVIGNEGEGVSKLVKENCDFIASIPMKGDIDSLNASVAAGVLAYEIV 241

Query: 278 NHFAK 282
               +
Sbjct: 242 RQRLQ 246


>gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 256

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 12/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +YGV+ V   L      + ++      T+ A               V+  P   +D++ 
Sbjct: 3   VVYGVNQVRELLRAGGGDVAEVWLAEGGTRGAAFAELERLGRGAGAKVRAAPRAKLDRLA 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G +  HQG+    A      L+ +           LL+VLD V DPHN+GAI+RSA A  
Sbjct: 63  GTDR-HQGVVAVVADFRYAELEDLLARAQASGRPPLLVVLDGVEDPHNLGAIIRSAHALG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +  +   +  +AK+++GA+E  P  R++N+   L+++   G  ++  ++D ++
Sbjct: 122 AHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVAFAADGER 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L +       AL+LG+EG+GLRP  + T    A + M G + +L+VS +AAVALY    
Sbjct: 182 ALGEVDLKGPTALVLGSEGEGLRPLVRRTCDLSARIPMSGDLDSLSVSASAAVALYEAAR 241

Query: 279 HFA 281
             A
Sbjct: 242 QRA 244


>gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 321

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 122/262 (46%), Gaps = 13/262 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDA 85
           D ++MQ      R    PE +   G + V   L    P+  ++  +  + +   +     
Sbjct: 61  DQRQMQRAAAIRRADDSPEMVL--GRNPVVECLRAGVPATALYVAVGAETDDRLKESVQR 118

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVL 138
                  +  VP   +D++     +HQG+AL+  P      D +       +   LL+ L
Sbjct: 119 AADAGISILEVPRTDLDRMSA-NGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVAL 177

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D++ DP N+GA++RS  AF   G++  +R S S +AV  ++++GA   +P  R +NLT  
Sbjct: 178 DNITDPRNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRT 237

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+   S G Q +GL +     L+       + +++G+EGKGL    +ET  S+  + M G
Sbjct: 238 LKDWQSKGVQVVGLDAGGDTSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIPMAG 297

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            +++LN S AA V L       
Sbjct: 298 EVESLNASVAAGVVLSEIARQR 319


>gi|84500909|ref|ZP_00999144.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
           HTCC2597]
 gi|84390976|gb|EAQ03394.1| RNA methyltransferase, TrmH family, group 3 [Oceanicola batsensis
           HTCC2597]
          Length = 265

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/240 (37%), Positives = 138/240 (57%), Gaps = 11/240 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++ R  +  E ++L+G+H V  AL NP+R+  +L+ TKNA  +L  DA        +  
Sbjct: 12  KERGRKAAAEETVWLFGLHAVRDALMNPAREKLRLIVTKNAADKLA-DAIAAGGIEPEMA 70

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTL------DAVRNSQLLMVLDHVNDPHNIGAI 150
            P+     +  ++VHQG ALE  PL   ++      D VR    +++LD V DPHN+GAI
Sbjct: 71  DPRRFTAPLDPQSVHQGAALEVRPLDWGSVAERCLGDGVR-PPRVVLLDRVTDPHNVGAI 129

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA  F    +I  + ++  E+  LAK+ASGALE  PY+R+ NL D + ++ S G+  +
Sbjct: 130 LRSAEVFGALAVIGMRHHAAPETGALAKTASGALERQPYLRVRNLADTIVELQSMGYLVL 189

Query: 211 GLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GL  ++   LE     +++  +AL+LGAEG GLRPKT++T   +  +   G   +LNVSN
Sbjct: 190 GLDGEAGTELEDAVEGLRDRPVALVLGAEGPGLRPKTRDTCDRLVRIAFAGSFGSLNVSN 249


>gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
 gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
 gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
 gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
 gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
 gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
          Length = 265

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 119/272 (43%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+             A+
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEKEV--AL 113

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + + L+ LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 114 ADGKFLL-LDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 RNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|225181305|ref|ZP_03734750.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168085|gb|EEG76891.1| RNA methyltransferase, TrmH family, group 3 [Dethiobacter
           alkaliphilus AHT 1]
          Length = 245

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 105/243 (43%), Gaps = 10/243 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTID 102
            E   + G   V  AL     KI ++L  K +  +   D       +   V+ +    +D
Sbjct: 2   EEKRMIEGRRPVMEALR-AGTKITRILLQKGSRGKPVDDILALAKEYSVKVEYLDKAALD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           K       HQG+  ET P        +          L++LDH+ DPHN+GA++R+A A 
Sbjct: 61  KRA-TSRNHQGVMAETPPFRYTPFADILAKAGDKPPFLVLLDHIQDPHNLGALIRTAYAA 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
            CDGII  +R +   +    ++A+GA E++P  ++ NL   L +    G    G   D +
Sbjct: 120 GCDGIIIPERRAAQMTPAAVRTAAGAAEYLPVAKVVNLARCLDECKDAGLWVYGADMDGE 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                        L++G+EG+GL    +E    +  L M G + +LN S A A+ +Y   
Sbjct: 180 SVYTTGDYQGGTVLVIGSEGEGLGRLVKEKCDHLVQLPMQGKVASLNASVAGALLMYEVY 239

Query: 278 NHF 280
              
Sbjct: 240 RQR 242


>gi|319640626|ref|ZP_07995343.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|317387747|gb|EFV68609.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 249

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 15/243 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHP-FPVKTVPPQTIDKIVG 106
            ++GV  V  A+    R+I ++L  K+  + L  +  A L +   PV+ VP + I++I  
Sbjct: 1   MIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITR 59

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +         P L     + L ++LD + D  N GAI R+      
Sbjct: 60  K--NHQGVVAFISSVTYQKTEDLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGA 117

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II   + S S +A   K+++GAL  +P  R  NLT+ ++ +   GF+ +  +      
Sbjct: 118 DAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQNLTNTIKYLKDCGFKIVAATEKGDYD 177

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--Q 277
             +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y    Q
Sbjct: 178 YTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQ 237

Query: 278 NHF 280
             F
Sbjct: 238 RGF 240


>gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           griseoflavus Tu4000]
 gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           griseoflavus Tu4000]
          Length = 314

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 13/279 (4%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--Q 70
           ++  H  +     +  +      Q+ R   +  +  + G ++V  AL    P+  ++  Q
Sbjct: 37  MRKGHAKQRAAQAKVRRAQGGRPQQRRGGGRSASELVVGRNSVVEALREGVPASTLYVQQ 96

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129
            +     +      A       +   P   +D++      HQGL L+  P      + + 
Sbjct: 97  FIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLV 155

Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++GA
Sbjct: 156 AGAHDEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGA 215

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242
               P  R +NLT AL+     G   +GL++D +  L      +  + +++G+EGKGL  
Sbjct: 216 AARTPVARATNLTRALEAYKKAGITVVGLAADGEAELGSLAALDGPVVIVVGSEGKGLSR 275

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ET      + MPG  ++LN   AA + LY      A
Sbjct: 276 LVGETCDHRVRIPMPGGTESLNAGVAAGIVLYEAARRRA 314


>gi|229587012|ref|YP_002845513.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
 gi|228022062|gb|ACP53770.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
          Length = 240

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 78/239 (32%), Positives = 130/239 (54%), Gaps = 7/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      + +  L      + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETNKKLIGTRAYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +   HQG+A +  P+ S  L+ +   N +  + +LD + D  NIGAI+RSA 
Sbjct: 59  DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  +  SP+ES  +AK+A G LE IP I++ NL   +  +   GF  IGL+  
Sbjct: 118 AFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVINLRSCMNYLKKHGFWIIGLTGS 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      ++ +DKI L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 ANDYFTDKLISDKIVLVFGSEDKGIRKLVAETCDYLAKIPISQRVESLNVSNAASIIFH 236


>gi|239981216|ref|ZP_04703740.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
 gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
 gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
          Length = 312

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 13/262 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANL 87
           K Q+   K+R   +  +  + G + V  AL +  P+  ++  Q +     +      A  
Sbjct: 52  KQQARRPKARPGQRSTSELVVGRNPVYEALRDGVPASTLYVQQFIDNDERVRDALALAAE 111

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140
                +   P   +D++      HQGL L+  P      + +           L+++LD 
Sbjct: 112 RGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHAEDLTAAAYDAGQDPLIVLLDG 170

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+GA++RS  AF   G++  +R +   +A   KS++GA    P  R +NLT  L+
Sbjct: 171 VTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGAAARTPVARATNLTRTLE 230

Query: 201 KMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                G   +GL++D +  +         +A+++G+EGKGL     ET      + MPG 
Sbjct: 231 AYKKEGVVVVGLAADGEADVTDLPALEGPVAIVVGSEGKGLSRLVGETCDIRVRIPMPGG 290

Query: 260 IKALNVSNAAAVALYITQNHFA 281
            ++LN   AA + LY      A
Sbjct: 291 AESLNAGVAAGIVLYEAARRRA 312


>gi|296284720|ref|ZP_06862718.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 249

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 99/233 (42%), Positives = 139/233 (59%), Gaps = 6/233 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +    +    + L+G H V AAL NP RK  +L AT+  +  LD +  LP  FPV+    
Sbjct: 5   RGSGRASTGQVRLWGRHAVEAALLNPERKHRKLWATREGIESLDGE--LPPDFPVEYADT 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLDHVNDPHNIGAILRSA 154
             +D++V ++A HQGL LE APL    L  V  S    + +++LD V DPHN+GAILRSA
Sbjct: 63  PDLDRLVARDAPHQGLVLECAPLEERDLAEVIQSGEPGRPIVLLDQVTDPHNVGAILRSA 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF    I+T  R++P ES V+AKSASGALE +P++R+ NL  AL  +   GF  IGL+ 
Sbjct: 123 AAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDDLAERGFWRIGLAG 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +++  L + I    +AL+LGAEG GLR        ++A L +   I++LNVSN
Sbjct: 183 EAEMTLAEAIPTGPVALVLGAEGAGLRHNIAGHCDALAKLPISDAIESLNVSN 235


>gi|255690061|ref|ZP_05413736.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
           DSM 17565]
 gi|260624338|gb|EEX47209.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides finegoldii
           DSM 17565]
          Length = 247

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     +   ++LD V D  N GAI R+   
Sbjct: 63  ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  +L   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPARGSASVNADAVKTSAGALHTLPVCREQSLRSTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|237715180|ref|ZP_04545661.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|229445013|gb|EEO50804.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
          Length = 246

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 3   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINR 61

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     +   ++LD V D  N GAI R+   
Sbjct: 62  ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 120 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y  
Sbjct: 180 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEA 239

Query: 277 QNHFA 281
                
Sbjct: 240 VKQRN 244


>gi|218899716|ref|YP_002448127.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
 gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
 gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
 gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
          Length = 265

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++  +P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILTKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|262408867|ref|ZP_06085412.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647643|ref|ZP_06725210.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
           CC 2a]
 gi|294810718|ref|ZP_06769366.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298481741|ref|ZP_06999931.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
 gi|262353078|gb|EEZ02173.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637009|gb|EFF55460.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides ovatus SD
           CC 2a]
 gi|294442051|gb|EFG10870.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087702|emb|CBK69225.1| rRNA methylase, putative, group 3 [Bacteroides xylanisolvens XB1A]
 gi|298271963|gb|EFI13534.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. D22]
          Length = 247

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGLMIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     +   ++LD V D  N GAI R+   
Sbjct: 63  ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   R S S +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLRSTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE  G+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILVYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|295094033|emb|CBK83124.1| rRNA methylase, putative, group 3 [Coprococcus sp. ART55/1]
          Length = 260

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 107/256 (41%), Gaps = 11/256 (4%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPF 91
           + F    +  S  E   + G + V  A  +     K++ L   ++ +             
Sbjct: 4   REFENNIKTESDEEAFVIEGRNAVLEAFRSGKTIDKLYVLDGCRDGIVNSIVREAKKQDT 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
            +  +  + ++++  +   HQG+    A      ++ +              +LD + DP
Sbjct: 64  VINYLSKEKLNQM-SQAGKHQGVIAHAAAYKYAEIEDMFALAESRGEDPFFFILDEIEDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAI+R+A      G+I  KR +   +A + K+++GA+ + P  +++N++  ++++  
Sbjct: 123 HNLGAIIRTANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNISKTIEELKD 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G        D +  + +      + L++G EG G+    +E    +  + M G I +LN
Sbjct: 183 RGMWFACADMDGE-LMYKCNLTGSLGLVIGNEGSGVSRLVKEKCDYVVSVPMKGDIDSLN 241

Query: 265 VSNAAAVALYITQNHF 280
            S AA V  Y      
Sbjct: 242 ASVAAGVLAYEVVRQR 257


>gi|328951303|ref|YP_004368638.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451627|gb|AEB12528.1| RNA methyltransferase, TrmH family, group 3 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 240

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 11/242 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
             + +YG + V  AL     ++ ++   +     L           +  VP   +D++V 
Sbjct: 3   GGMRIYGRNPVLEALREG--RVRRVWVARGVERWLVRQLE-ASGVELVFVPRIELDQMV- 58

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +   HQG+  E   +     +A            LL+++D V DP N GAILR+A A   
Sbjct: 59  RTTRHQGVVAEVEGVAFADEEAPLRRARERGEPPLLVLVDGVTDPRNFGAILRTAEALGA 118

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+++ +R S   S V  K+++GA   IP +R+ NL   ++ +   G    G +  ++K 
Sbjct: 119 HGVVSEERRSAPLSPVAVKASAGAAHRIPVVRVKNLPRYIEWLKGLGVWVYGTAGQAEKT 178

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +      +AL++G+EG+G+R   +E    +  + + G  ++LNV+ A  +AL+    H
Sbjct: 179 LAELDYARPLALVVGSEGEGMRRIVREHCDELVRIELRGETESLNVAVALGIALHWAVQH 238

Query: 280 FA 281
             
Sbjct: 239 RG 240


>gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168]
 gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168]
          Length = 244

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 107/240 (44%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
           + G + V  A+ +  R I ++   +     ++D           P++      +DK    
Sbjct: 4   IEGRNPVIEAIKSG-RTIKKIFIQEGVRGKKVDRIIKEASRFNIPLQKAKKDFLDKKARS 62

Query: 108 EAVHQGLALETAPLLS----PTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            + HQG+      +        ++  R       +++LD V DPHN+GAI+R+A A    
Sbjct: 63  HS-HQGIIAMADDIKYVSPREMVEIAREKGEDPFIIILDQVQDPHNLGAIIRTAYAAGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  ++ S   + V+ K+++GA+ H+P  ++SN+   +  +   G    G      +P 
Sbjct: 122 GLIYPRKRSADITPVVTKASAGAVNHLPLAKVSNINYTIADLKDMGLWITGTDVRGTRPY 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L++G EGKG+R   +E    + ++ M G + +LN S AA V ++      
Sbjct: 182 YSADYKGPVGLVIGNEGKGMRRLVKENCDFVVNIPMSGELGSLNASVAAGVVIFEVVRQR 241


>gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 314

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 28/291 (9%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63
           + K  ++++    +H  KL R  RD           RH  +  +L + G + V   L+  
Sbjct: 36  TPKAEDRVYH--SAHKRKLERQRRD---------SGRHEKEKADLVV-GRNPVVECLHAK 83

Query: 64  -PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            P+  +F  L T +   RL     L      PV  VP + +D + G   +HQG+ L+  P
Sbjct: 84  VPAEALFVALGTAH-DDRLSEAVTLANSKGLPVHEVPRRDLDTMTG-NGLHQGIGLKIQP 141

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +  +         + + +VLD++ DP N+GA++RS  AF   G+I  +R S   +
Sbjct: 142 YKYADVFDLMAGVKDRGQTGMFVVLDNITDPRNLGAVIRSTAAFGGHGVIIPERRSAQVT 201

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALI 232
            V  ++++G    +P  +  N+T  +++    G+  +GL +  +  L+      D + ++
Sbjct: 202 GVAWRTSAGTAARLPVAKAVNITRTIKEFKDNGYIVVGLDAGGEHTLDTFDGGADPVVIV 261

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
           +G+EGKG+    +E    +  +     +++LN S AA V L  +  Q   A
Sbjct: 262 VGSEGKGISRLVRENCDVLMSIPTESWVESLNASVAAGVVLSEFARQRRAA 312


>gi|224535475|ref|ZP_03676014.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522941|gb|EEF92046.1| hypothetical protein BACCELL_00338 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 246

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+    + +         P L     + L ++LD V D  N GAI R+   
Sbjct: 63  ITRK--NHQGVIAFISSVTYQKTEDLVPFLFEEGKNPLFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S + +A   K+++GAL  +P  R  NL   LQ +   GF+ +  +   
Sbjct: 121 AAVDAVIIPAKGSVTVNADAMKTSAGALHVLPVCREQNLKVTLQYLKDSGFRIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+  +          + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYENLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VKQR 244


>gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 317

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 122/280 (43%), Gaps = 14/280 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF-- 69
           S +  H  K R  +   +K  +    +R   +  +  + G + V  AL +  P+  ++  
Sbjct: 40  SARKGH-KKNRVANAQARKAATRRPVARRGGKGTSEMVVGRNPVFEALRDGVPASTLYVQ 98

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           Q +     +      A       +   P   +D++      HQGL L+  P      + +
Sbjct: 99  QFIDNDERVREALQLATGRGNINIMEAPRPELDRLT-NGLNHQGLVLQVPPYEYAHPEDL 157

Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 158 AAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 217

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241
                P  R +NLT AL+     G   +GL++D +  + + E     + +++G+EGKGL 
Sbjct: 218 TAARTPVARATNLTRALESYQKAGLTVVGLAADGETEVGDLEALGGPLVIVVGSEGKGLS 277

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET   +  + MPG  ++LN   AA V LY      A
Sbjct: 278 RLVGETCDYLVRIPMPGGAESLNAGVAAGVVLYEAAKRRA 317


>gi|307326969|ref|ZP_07606159.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           violaceusniger Tu 4113]
 gi|306887267|gb|EFN18263.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           violaceusniger Tu 4113]
          Length = 316

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 122/279 (43%), Gaps = 15/279 (5%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--Q 70
           ++  H  +   N R   +  +    +R   +  +  + G ++V  AL    P+  ++  Q
Sbjct: 41  MRKGHAKQRITNAR--TRQAAKRPVARRGGKGSSELVVGRNSVFEALREGVPANTLYVQQ 98

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129
            + + + +      A       +   P   +D++      HQG+ L+  P      + + 
Sbjct: 99  FIDSDDRVREALKLAADRGGIHLMEAPKPELDRMT-NGLNHQGVVLQVPPYEYAHPEDLS 157

Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G 
Sbjct: 158 AAAFDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGT 217

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRP 242
               P  R +NLT  L+     G   +GL++D +  L+  E  +  + +++G+EGKGL  
Sbjct: 218 AARTPVARATNLTRTLEAYQKAGLTVVGLAADGEVELQDVEALDGPLVIVVGSEGKGLSR 277

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ET      + MPG  ++LN   AA V LY      A
Sbjct: 278 LVGETCDLRVRIPMPGGAESLNAGVAAGVVLYEAARRRA 316


>gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
 gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
          Length = 260

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 111/261 (42%), Gaps = 10/261 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +  +K  +   ++ ++ ++     + G   V  A       +  L+ T++A  ++D 
Sbjct: 6   SKENNLFKNTKKLKER-KNRTKTSRYIIEGFRLVQEAFK-AKVDVDYLIVTEDAHDKVDE 63

Query: 84  DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                +     +  +      +++  E   QG+          T+++  +    ++ D V
Sbjct: 64  FLGKYINGEIKIYEISSNLFKELISTE-NPQGILAVIK---MNTMESKFDGDFYLLCDKV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A     II TK      +    +S  G++ +IP          +++
Sbjct: 120 QDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTMGSIFYIPIYYDDENLSLVKE 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF  +  S D+ K   Q     ++ L +G EG G+  +  E A +   + MPG  +
Sbjct: 180 LKGKGFNLVVTSLDTDKNFFQADLRGRVLLTVGNEGNGVSREVLEMADTKVKIPMPGNAE 239

Query: 262 ALNVSNAAAVALYI--TQNHF 280
           +LNV+ A++V +Y    QN  
Sbjct: 240 SLNVAVASSVIMYEKVRQNQL 260


>gi|330837615|ref|YP_004412256.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
           DSM 17374]
 gi|329749518|gb|AEC02874.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta coccoides
           DSM 17374]
          Length = 258

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 19/246 (7%)

Query: 51  LYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G H +  AL   +    ++         ARL+  A L     VK +    +D++V   
Sbjct: 5   ITGAHAIEEALKQASAGSTLYIQRGMGEKGARLERLAQLTGRVAVKKLSAAELDRMV-PG 63

Query: 109 AVHQGLALE--------------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
             H+G  ++              T      +L+  ++S L+MVLD + DPHN+GAILRSA
Sbjct: 64  IDHRGAVMDLGSVRRGGGRANTTTVEDFLGSLEEGKDS-LVMVLDGITDPHNLGAILRSA 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  D ++  +R S   +  +A+ +SGA +++P   ++N+T  L  M   GF   G   
Sbjct: 123 DQFGVDLVVVPERRSAQANETVARVSSGASQYVPTAVVTNITSTLTMMKDHGFWIYGADM 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +   E      +  +++G+EG G+    +E    +  + M G I +LNVS AA + +Y
Sbjct: 183 NGESS-ETIEFTGRCIIVMGSEGDGMSRLVRENCDFIVSIPMQGHIDSLNVSVAAGILMY 241

Query: 275 ITQNHF 280
             +   
Sbjct: 242 EARRQR 247


>gi|154485051|ref|ZP_02027499.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
           27560]
 gi|149734004|gb|EDM50123.1| hypothetical protein EUBVEN_02772 [Eubacterium ventriosum ATCC
           27560]
          Length = 247

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E   L G + V  A        K+F L   K             H   +  V  + +D++
Sbjct: 4   EEFTLEGRNAVIEAYRAGKTIDKLFVLEHCKEGSMNTVLREAKKHDTVINYVKKERLDQM 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A     T+D +         S  +++LD + DPHN+GAI+R+A   
Sbjct: 64  -SETGKHQGVIGYLAAYEYATVDEILDKAREKGESPFVILLDDIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  K  +   +A +AK+++GAL + P  +++N++  ++++   G   +       
Sbjct: 123 GAHGVIIPKHRASGLTATVAKTSAGALNYTPVAKVTNISKTIEELKKEGMWFVCADM-GG 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +        I L++G EGKG+    +E    +A + M G I +LN S A  V  Y   
Sbjct: 182 TTMYDLDLKGSIGLVIGNEGKGVSRLVKEKCDFVASIPMFGDIDSLNASVATGVLAYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9301]
          Length = 334

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 141/287 (49%), Gaps = 20/287 (6%)

Query: 6   KKKSEKIFSLKDS-HYAKLRRNHRDYKKMQSFNQKSRHTSQPEN------LFLYGVHTVS 58
            KK E +   K+S  ++  +R +  +K    F+ K+    Q          +++G H+V 
Sbjct: 45  NKKVENLSKNKESNTFSSFKRRNTKFKSNTEFSNKNSDIHQEFTNKRNFDDWIWGKHSVY 104

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGL 114
             L +  R I ++  T    +   +   L         ++ V    + ++    A HQG+
Sbjct: 105 ETL-SSDRAINRIWCTSEIFSSDKFYILLKDLKSKGVLIEEVSWNRLSQLTC-GASHQGV 162

Query: 115 ALETAPLLSPTLDAVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           AL+ A   +  L+ +         + +++  D + DPHN+GAI+RSA AF C G+I  +R
Sbjct: 163 ALQLACSKTIPLEQLIYFSKHNCPNPIIVAFDGITDPHNVGAIIRSAEAFDCKGVIIPQR 222

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S   +  +AK A+GALEH+   R+ NL  AL+++   GF  +GLS D +  +    +  
Sbjct: 223 RSAGLTGTVAKVAAGALEHLHVSRVVNLNRALEELKKNGFLVVGLSGDGQISISNFQEKA 282

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +++G+E KG+   TQ+    +  + + G   +LN S AAA++LY
Sbjct: 283 PLVVVVGSEDKGISLLTQKKCDYILSIPLKGKTSSLNASVAAAISLY 329


>gi|319760229|ref|YP_004124167.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038943|gb|ADV33493.1| 23S rRNA methyltransferase [Candidatus Blochmannia vafer str. BVAF]
          Length = 248

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 114/243 (46%), Gaps = 11/243 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V + L+     I ++     ++N+     ++  +     ++    + ++ I
Sbjct: 2   SELVYGIHAVQSILDKNPSNILRIYILDKSRNSKLEFLFNQGVILKIKIQEKTRRWLN-I 60

Query: 105 VGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               ++HQG+  E   +       L   +        L++LD + DPHN+GA LRSA A 
Sbjct: 61  KSSGSLHQGIIAEVNKVMCLKESDLLQLIQCYNKVPFLLILDGITDPHNLGACLRSADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +  S S ++ + K +SG+ +H+ ++R++NL   L+ +  +    +G    S 
Sbjct: 121 GVHMVIAPRNRSASINSTVRKVSSGSADHVAFLRVTNLLRILKLLQKYDIWIVGTVEKSD 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + +        +AL++G+EG G+R  T+E    +  + M G   +LNVS A  + L+   
Sbjct: 181 REIFDAKLVGPLALVMGSEGYGMRRVTKENCNEIISIPMCGFTSSLNVSVATGICLFEAL 240

Query: 278 NHF 280
              
Sbjct: 241 RQR 243


>gi|296392882|ref|YP_003657766.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
           DSM 44985]
 gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
           DSM 44985]
          Length = 296

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 13/256 (5%)

Query: 37  NQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH--PF 91
             ++R   Q  +   ++ G + V   L      +  L+A+  +A  R+     +      
Sbjct: 38  KTRARAVRQAADAPEWVLGRNPVLECLRAKVPAVELLVASGIDADERVAESVRIAGNVGV 97

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
           PV  V    +D+     A HQG+ L   P      + +           L + LDH++DP
Sbjct: 98  PVTEVARFELDRRSS-GAPHQGIGLRVRPYEYHHPEDLLTEAENSGRPALFVALDHISDP 156

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA++RSA AF   G++   R S S +A+  ++++GA   +P  +  NL  +L++   
Sbjct: 157 RNLGAVVRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLARSLKQWQE 216

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   +GL ++    L+     + +AL++G+EGKGL    +E+   +  + M G +++LN
Sbjct: 217 RGLLLVGLDAEGDTSLDDFTGTEPLALVVGSEGKGLSRLVRESCDFVVSIPMSGQVESLN 276

Query: 265 VSNAAAVALYITQNHF 280
           VS A  V L       
Sbjct: 277 VSVATGVVLGEIARQR 292


>gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
 gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
          Length = 265

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKTG--IVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKREK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKENDVPVYGTALENGVPYGEVTPAGSFALIVGNEGNGVRQEILAKTN 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 253

 Score =  232 bits (593), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + + KI ++  + +A  +      D    +   VK V    I K+  +
Sbjct: 4   IEGKNPVKEALKSGA-KITEVYISNSAKDKETAQIIDLCRQNGVVVKFVDKHKIYKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+           +D +            L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSIIRSAHLCGVH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       ++  KP+
Sbjct: 122 GIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADANGSKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G + + N S AA +  +      
Sbjct: 182 YECDFTIPTCVVIGSEGKGITRLVKEGADFLIKIPQKGYVNSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
           prausnitzii A2-165]
 gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
           prausnitzii A2-165]
          Length = 267

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 15/266 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           D +KM    ++S    QP+N   +YG + V+  L + S     L+A   A A   +   +
Sbjct: 2   DEQKMPRRPRRSSTEEQPKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTAM 61

Query: 88  PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVL 138
                  VK V P  +  + G E+ HQG+A   + +   T++ + N          L++ 
Sbjct: 62  AKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYVTVEDLLNVAREKGEPPFLVLS 120

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P  R++N+ + 
Sbjct: 121 DGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGET 180

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++   G        D   PL +      IAL+LG+EG G+    ++    +  L M  
Sbjct: 181 IRRLKDQGVFVYCADMDG-VPLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMAA 239

Query: 259 ---IIKALNVSNAAAVALYITQNHFA 281
               + + NVS AA + LY  Q+  A
Sbjct: 240 QGTGVDSFNVSVAAGIILYEIQSQRA 265


>gi|329961137|ref|ZP_08299392.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
           12057]
 gi|328532075|gb|EGF58885.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides fluxus YIT
           12057]
          Length = 249

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 13/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEAIQAGKE-IDKILVKKDIQSDLSKELFAVLKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           I  K   HQG+   T+ +         P L     + L ++LD + D  N GAI R+   
Sbjct: 63  ITRK--NHQGVIAFTSSVTYQKTEDLVPFLFEQGKNPLFVMLDGITDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            + D +I   + S S +A   K+++GAL  +P  R  +L   LQ +   GF  +  +   
Sbjct: 121 AAVDAVIIPAKNSVSVNADAMKTSAGALHTLPVCREQSLKGTLQFLKDSGFHIVAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      + +I+GAE KG+             + M G I++LNVS AA + +Y  
Sbjct: 181 DYDYTKADYTGPMCIIMGAEDKGVSYDNLALCDEWVKIPMLGTIESLNVSVAAGILIYEA 240

Query: 277 QNHFA 281
                
Sbjct: 241 VKQRN 245


>gi|302671185|ref|YP_003831145.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302395658|gb|ADL34563.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 249

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 14/245 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTID 102
           E+  + G + V  A  +  + I +L          +  +  +A       +  V  + +D
Sbjct: 6   ESRIIEGRNAVLEAFRSG-KTIDRLFILDGCKDGPVQTILREAKKHKDTVISFVKKERLD 64

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  +   HQG+    A      +D +            +++LD++ DPHN+GAI+R+A 
Sbjct: 65  QL-SETGKHQGVIAYGASYNYAEVDDILERAKQKGEDPFIIILDNIEDPHNLGAIIRTAN 123

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  K  + S +A +AK+++GA+ + P  +++N+ + ++ +   G         
Sbjct: 124 LAGAHGVIIPKHRAASLTATVAKASAGAINYTPVAKVTNIANTIEDLKDKGLWFACADM- 182

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               + Q      I L++G EG G+    +E    +A + M G I +LN S A  V  + 
Sbjct: 183 GGTTMYQLNLKGPIGLVIGNEGSGVSRLVREKCDMIASIPMKGDIDSLNASVACGVLAFE 242

Query: 276 TQNHF 280
                
Sbjct: 243 VVRQR 247


>gi|167753257|ref|ZP_02425384.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
 gi|167659188|gb|EDS03318.1| hypothetical protein ALIPUT_01529 [Alistipes putredinis DSM 17216]
          Length = 243

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 12/240 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+  V  A+    ++I +L   K A  +L     D  L H    + VP + ++++  
Sbjct: 5   LVFGIRPVVEAIE-AGKQIEKLYIRKGAEGQLMTELRDLCLRHRIRTQEVPVEKLNRLT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  + +P+    L+ +        + L+++ D V D  N GAI RSA      
Sbjct: 63  -RGNHQGVVAQISPIGYVELNDILERVPEDETPLIVLFDGVTDVRNFGAIARSAECAGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I   + +   ++   +S++GAL  IP  R+ ++ + L+ + + G+Q +G +  S+K L
Sbjct: 122 GLIVPLKNAAPVNSEAIRSSAGALTAIPVCRVGSIRNTLKALQAEGYQVVGATEKSRKLL 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    AL++GAE  G+  +  +       + M G I++LNVS AAAV L+      
Sbjct: 182 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPMIGKIESLNVSAAAAVLLFEIVRQR 241


>gi|88658569|ref|YP_507224.1| RNA methyltransferase [Ehrlichia chaffeensis str. Arkansas]
 gi|88600026|gb|ABD45495.1| RNA methyltransferase, TrmH family, group 3 [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 252

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 135/235 (57%), Gaps = 9/235 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103
           +++YG H  +AAL N +RK  +LL T+N +   +  + +          +K V P  I+ 
Sbjct: 6   IWIYGKHPCTAALQNKNRKCHELLVTENFMKNNNEISKILRLCKQKNINLKQVNPNYINS 65

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           ++   + HQG+AL+ + + S T++ V    + S  +++LD V D HN+G+I+RSAV F+ 
Sbjct: 66  VLPHNSNHQGIALKASVIDSTTVEEVLNTSKESSTIILLDQVTDIHNVGSIIRSAVCFNV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II     SPSE+  ++K++SGA++ IP + + N+ + ++ +   G+   G  +   + 
Sbjct: 126 DAIILPYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLLKKAGYWCYGFDAKEGEF 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L +   + K  +I G+E KG+R  T+E    +  + +   I +LNVSNAAAVALY
Sbjct: 186 LHKTKLDSKKLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLNVSNAAAVALY 240


>gi|260887695|ref|ZP_05898958.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
 gi|260862575|gb|EEX77075.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
          Length = 287

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 127/270 (47%), Gaps = 17/270 (6%)

Query: 24  RRNHRDYKKMQSFNQKS-----RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA- 77
           ++  R  K+ ++  ++      R  +   +  L G + V  AL    R I ++L  + A 
Sbjct: 13  KQKKRPAKEERTVLKRGGRQEERRDAPSADEILVGRNAVFEALK-AGRGINRILVAQGAK 71

Query: 78  --LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
                           PV+    + +D++   +  HQG+    AP+   +LD V      
Sbjct: 72  EAALAPLLSLAREQGVPVRASKREKLDQLA-PDMRHQGVIAYAAPVAYASLDDVFACAEE 130

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                LL++LD + DPHN GA+LR+A A    G++  +R   + +A +AK+++GA+EH+ 
Sbjct: 131 KGEPPLLLLLDEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVR 190

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +RI N+   ++++   G   +G      + +        + +++G+EGKGL    +ET 
Sbjct: 191 VVRIGNIVQEMKRLKERGLWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETC 250

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  + M G I +LN S A A+ +Y  + 
Sbjct: 251 DFLVRIPMHGAINSLNASVAGALLMYEARR 280


>gi|313904853|ref|ZP_07838225.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
           cellulosolvens 6]
 gi|313470286|gb|EFR65616.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium
           cellulosolvens 6]
          Length = 305

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L G + V  A  +  R + +L      K  + +            +  VP + ++++  +
Sbjct: 68  LEGRNAVLEAFRSG-RSVDKLYLQADLKEGMIQTIAREARKAGTVINYVPKERLNQM-SE 125

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    A      ++ +         +  L +LD + DPHN+GAI+R+A      
Sbjct: 126 TGSHQGVIAVVASFDYAEVEDIFQKAKDKGEAPFLFLLDGIEDPHNLGAIIRTANLAGAH 185

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I T+  +   +A +AK+++GA+ + P  +++NL   + ++   G   +  + D  + +
Sbjct: 186 GVIITRHRAVGLTATVAKASAGAINYTPVAKVTNLGATIDELKKKGMWFVCAAMDGTR-M 244

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   I L++G EG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 245 YDLDLKGPIGLVIGNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 304


>gi|225026002|ref|ZP_03715194.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
 gi|224956652|gb|EEG37861.1| hypothetical protein EUBHAL_00240 [Eubacterium hallii DSM 3353]
          Length = 251

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 103/249 (41%), Gaps = 11/249 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           R     E   + G + V  A  +     K+F L   ++   +            +K V  
Sbjct: 2   RKNMAYEECTVVGRNAVMEAYRSGKTIDKLFILDGCQDGPIKSILREARKRDTLIKFVSK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
           + +D +      HQG+    A     T++ +         +   ++ D + DPHN+GAI+
Sbjct: 62  EKLDSL-SFHEKHQGVVAIAAAYEYATVEDLFKKAEEKGEAPFFILCDEIEDPHNLGAII 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A      G+I  KR +   ++ +AK ++GAL + P  R++NL+  + ++   G   + 
Sbjct: 121 RTANLAGAHGVIIPKRRAVGLTSTVAKVSAGALNYTPVARVTNLSRTIDELKDKGMWFVC 180

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                +  +        I LI+G EG G+    +E    +A + M G I +LN S A  V
Sbjct: 181 GDMGGE-LMYDLNLTGSIGLIIGNEGNGVSRLVKEKCDYIASIPMKGDIDSLNASVATGV 239

Query: 272 ALYITQNHF 280
             +      
Sbjct: 240 LAFEIVRQR 248


>gi|306821097|ref|ZP_07454713.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550790|gb|EFM38765.1| RNA methyltransferase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 246

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 14/244 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVG 106
           + + G ++V  A+          + + +   RL +  ++       +K V  + +D +  
Sbjct: 1   MIIIGRNSVIEAIKKDRNLDTIYIKSGDKDERLKYIISIAKNKKILIKEVDRKKLDALAQ 60

Query: 107 KEAVHQGLALETAPLLSPTLDAV----------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            E  HQG+A   +       + +               +M+LD + DPHN+GAI+RSA  
Sbjct: 61  GE-NHQGVAASASEYEYYDFEKLLDDIKVNKEQSKKNFVMILDKIEDPHNLGAIIRSAHL 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I   R S +  + + K + GA  ++  IR++NL DA++K+   G     L    
Sbjct: 120 SGVDAVIIPNRRSANVDSTVEKVSVGATSYMKIIRVTNLNDAIEKLKKAGLWIYCLDM-G 178

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       IA+I+G EGKG+    ++ +  +  + M G I +LN S A+++ ++  
Sbjct: 179 NDYYFNTDLTGDIAVIVGNEGKGVSELIRKNSDFVISIPMLGKIDSLNASVASSIVMFEV 238

Query: 277 QNHF 280
               
Sbjct: 239 LRQR 242


>gi|256546104|ref|ZP_05473457.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
           2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
           51170]
 gi|256398221|gb|EEU11845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (23SrRNA
           2'-O-methyltransferase) [Anaerococcus vaginalis ATCC
           51170]
          Length = 237

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 7/233 (3%)

Query: 51  LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
           +YG  +V   ++     K   +L  K    +L     +       P+         KI G
Sbjct: 4   IYGRKSVLETIDAGENIKKAHILNNKGKNHKLIDKIINKLEDENVPIFYEDKDYFSKISG 63

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               HQG+ +E        LD +++ + LM+LD + DPHN+GAI+RSA AF  DGII ++
Sbjct: 64  ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIIISE 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   ++ + K+++GA+ +I    + N+  A++++    F   GL+ +++  + Q    
Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKKENFWVYGLAGEAEGDITQTDLT 180

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            KIAL++G EGKGL    +E    +  + M G I +LN S A+A+A+Y +   
Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233


>gi|19553838|ref|NP_601840.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62391479|ref|YP_226881.1| rRNA methyltransferase TRMH family [Corynebacterium glutamicum ATCC
           13032]
 gi|21325412|dbj|BAC00034.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
 gi|41326820|emb|CAF21302.1| PUTATIVE RRNA METHYLTRANSFERASE TRMH FAMILY [Corynebacterium
           glutamicum ATCC 13032]
          Length = 313

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 131/292 (44%), Gaps = 27/292 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++ +    +H  K+ R+ RD         + RH  +     + G + V   L
Sbjct: 34  KGPTPKAEDRTYHA--AHKRKVERDRRD---------RGRHQRE-MPELVVGRNPVLECL 81

Query: 62  NNPSRKIFQLLATKNA--LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALE 117
            +       L   + A    RL    +       PV  V    +D++ G   +HQG+ L 
Sbjct: 82  -HARVPATALYVAEGAANDERLSEAVHTAAGRNLPVLEVNKLELDRMTG-NGMHQGIGLA 139

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             P     +  +       +   + ++LD++ DP N+GA++RS  AF  +G+I  +R S 
Sbjct: 140 IPPYEYADVHDLIANAAASKKPGMFVILDNITDPRNLGAVIRSVGAFGGNGVIIPERRSA 199

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           S +AV  ++++G    +P  + +N+T  +++    G+Q +GL +     L+     D + 
Sbjct: 200 SVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQVVGLDAGGDHTLDTYDGTDNVV 259

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHF 280
           +++G+EGKG+    +E   ++  +   G +++LN S AA V L  +  Q   
Sbjct: 260 IVVGSEGKGISRLVRENCDTIMSIPTEGWVESLNASVAAGVVLSEFSRQRRI 311


>gi|67458667|ref|YP_246291.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
 gi|67004200|gb|AAY61126.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
          Length = 240

 Score =  232 bits (592), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 134/239 (56%), Gaps = 7/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      D +  L      + V  
Sbjct: 2   QNKKLDSKNCYYMYGKHPVFSALNNPKRQIENILCTREIF---DTNKKLIGTRSYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA--VRNSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +   HQG+A +  P+ S  L+   ++N +  + +LD + D  NIGAI+RS+ 
Sbjct: 59  DILSKLL-ENQTHQGIAAKVRPIFSYNLEDVDIKNPKCKIAILDQITDTQNIGAIIRSSA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  D II  +  SP+ES  +AK+A G LE IP I+++NL   +  +   GF  IGL+  
Sbjct: 118 AFDIDAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHGFWIIGLTGS 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      ++ +DK+AL+ G+E KG+R   +ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 ANDYFTDKLISDKMALVFGSEDKGIRRLVEETCDYLAKILISKRVESLNVSNAASIIFH 236


>gi|225568314|ref|ZP_03777339.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
           15053]
 gi|225162843|gb|EEG75462.1| hypothetical protein CLOHYLEM_04389 [Clostridium hylemonae DSM
           15053]
          Length = 250

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 110/248 (44%), Gaps = 13/248 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTI 101
           +   L + G + V  A  +  R I +L      ++   R        H   +  V  + +
Sbjct: 5   KESELMIEGRNAVLEAFRSG-RPIDKLFVLDGCQDGPVRTIVREAKKHDTVLNFVTKERL 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
            ++  +   HQG+    A      +D +            + +LD++ DPHN+GAI+R+A
Sbjct: 64  SQM-SETGRHQGVIAYGAAYEYAGVDDMLALAEERGEDPFIFLLDNIEDPHNLGAIIRTA 122

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                 G+I  KR +   +A +A++++GAL + P  +++NL   ++++   G   +    
Sbjct: 123 NLAGAHGVIIPKRRASGLTATVARTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCADM 182

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D +  + +      I L++G EG+G+    +ET    A + M G I +LN S AA V  Y
Sbjct: 183 DGE-SMYRLNLTGPIGLVIGNEGEGVGRLVKETCDFAAGIPMKGNIDSLNASVAAGVLAY 241

Query: 275 ITQNHFAK 282
                  +
Sbjct: 242 EIVRQRIQ 249


>gi|154249698|ref|YP_001410523.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1]
 gi|154153634|gb|ABS60866.1| RNA methyltransferase, TrmH family, group 3 [Fervidobacterium
           nodosum Rt17-B1]
          Length = 234

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 5/233 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVG 106
           + +YG + +   L +    +  +  + +    LD           P    P   + K+ G
Sbjct: 1   MIVYGRNVLKEILTSNH-PVKLIYFSDSHDKELDKLIEQVKERKLPYTIAPKNVLKKLCG 59

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +E   QG+ ++           +  +  +++LD V DP N+GAI+R+AVA   + ++ TK
Sbjct: 60  EEKN-QGVVIDIGDFQYADESYLPENPFIVLLDQVQDPQNLGAIVRTAVAAGVNMVVLTK 118

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             S   +    K+++G +  IP +   NL   ++K+   G    G     K PL +    
Sbjct: 119 DNSAHVTPGSIKASAGTIFRIPIVITVNLARYIEKLKDKGVWIYGADMRGK-PLWEVKLE 177

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + ++ G EG G+R   +E+   +  + M   I +LNVS +A + +Y     
Sbjct: 178 RPLGIVFGNEGSGIRQLVKESCDELVSIPMKTPIDSLNVSVSAGILIYEVLRR 230


>gi|238650976|ref|YP_002916832.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
           Rustic]
 gi|238625074|gb|ACR47780.1| 23S rRNA Gm2251 methyltransferase [Rickettsia peacockii str.
           Rustic]
          Length = 240

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 128/239 (53%), Gaps = 7/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +++        ++YG H V +ALNNP R+I  +L T+      +    L      + V  
Sbjct: 2   QNKKLDSKHCYYMYGKHPVFSALNNPKRQIDNILCTREIF---ETHKKLIGTRAYEIVNN 58

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQL-LMVLDHVNDPHNIGAILRSAV 155
             + K++ +   HQG+A +  P+ S  L+ +   N +  + +LD + D  NIGAI+RSA 
Sbjct: 59  DILSKLL-ENQTHQGIAAKIRPIFSYNLEDIDITNPKCKIAILDQITDTQNIGAIIRSAA 117

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  + II  +  SP+ES  +AK+A G LE IP I+++NL   +  +    F  IGL+  
Sbjct: 118 AFDINAIILPQDNSPNESGSIAKAACGTLELIPIIKVTNLRSCMNYLKKHRFWIIGLTGS 177

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +      ++ +DK  L+ G+E KG+R    ET   +A + +   +++LNVSNAA++  +
Sbjct: 178 ANDYFTDKLISDKTVLVFGSEDKGIRRLVAETCDYLAKIPISQRVESLNVSNAASILFH 236


>gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix
           DSM 17093]
          Length = 241

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 13/238 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIV 105
           + +YG   V+ AL      + +L           +            ++ VP   +D+ +
Sbjct: 1   MLIYGKQAVAEALREGG--VLRLFVAHGVQPGTVKQFEALARKAGVTLERVPRTQLDQAL 58

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            K   HQG+  E   L     +A            LL++LD + DPHN GAI+RSA    
Sbjct: 59  -KTTRHQGVVAELPELSYADPEAPFTRAARRGEKPLLVLLDGITDPHNYGAIIRSAEVLG 117

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++T +R S   SAV+AK ++GA  H+P +++ NL   ++ + + G    G S D+  
Sbjct: 118 AHGVVTEERRSAPLSAVVAKVSAGASSHLPLVQVKNLPRYMEALKARGVWLYGASGDAAA 177

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +Q   +   AL++GAEG G+R   +ET   +  + M G + +LN S AA + LY  
Sbjct: 178 LPQQLDWDRPAALVIGAEGAGMRRLVRETCDELVAIPMRGQVASLNASVAAGILLYAA 235


>gi|325103518|ref|YP_004273172.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
           12145]
 gi|324972366|gb|ADY51350.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter saltans DSM
           12145]
          Length = 255

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 14/258 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPH 89
           MQ  N K R   +  N  ++G+  V  A+    + I  L   +     +  +        
Sbjct: 1   MQDRNFK-RQEPRESNQMIFGIRAVIEAIK-AGKDIESLFIQRGLTGGIYTELKTLLREF 58

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142
             P + VP + +++I  K   HQG+    +P+    ++ +         + L+++LD++ 
Sbjct: 59  DIPSQQVPVEKLNRITAK--NHQGVIAFISPITYQKIEDIIPQVYEKGETPLILILDNIT 116

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N GAI R+A       I+  KR +   +    K+++GAL  +P  R  +L   L+ +
Sbjct: 117 DVRNFGAIARTAECSGVHAIVIPKRGAAQINPDAVKTSAGALYKVPVCRHDSLLQILRFL 176

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +  +  +   + +       A+I+GAE  G+  +    +  +  + M G I++
Sbjct: 177 KDSGLQIVSCTEKTDDLIYKPDYTVPTAVIMGAEDTGISFELIRNSDYLTKIPMAGEIES 236

Query: 263 LNVSNAAAVALYITQNHF 280
           LNVS +A + LY      
Sbjct: 237 LNVSVSAGIILYEAVRQR 254


>gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
          Length = 229

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 64  PSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            SR   +    K     RL    N  +     ++ +  + +D    + A HQGL     P
Sbjct: 1   RSRAFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDKA-EGANHQGLIARVKP 59

Query: 121 ---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              L    LD +       LL+VLD V DPHN+GA LR+A A     +I  K  S   +A
Sbjct: 60  ARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTA 119

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            ++K A GA E +P +R++NL   ++ +   G   +G + ++   + Q      +A+++G
Sbjct: 120 TVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIYQSKLTGSLAIVMG 179

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           AEG G+R  T+ET   +  + M G + +LNVS A  V L+      
Sbjct: 180 AEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFEAVRQR 225


>gi|325845921|ref|ZP_08169119.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481827|gb|EGC84859.1| RNA methyltransferase, TrmH family, group 3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 51  LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
           +YG  +V   ++     K   +L  K    +L     +       P+         KI G
Sbjct: 4   IYGRKSVLETIDAGENIKKAHILDNKGKNHKLIDKIINKLEDKNVPIFYEDKDYFSKISG 63

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               HQG+ +E        LD +++ + LM+LD + DPHN+GAI+RSA AF  DGI+ ++
Sbjct: 64  ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISE 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   ++ + K+++GA+ +I    + N+  A++++    F   GL+ ++   + Q    
Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLT 180

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            KIAL++G EGKGL    +E    +  + M G I +LN S A+A+A+Y +   
Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233


>gi|212695900|ref|ZP_03304028.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677023|gb|EEB36630.1| hypothetical protein ANHYDRO_00433 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 237

 Score =  231 bits (591), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 51  LYGVHTVSAALNNPSR-KIFQLLATKNALARLD---WDANLPHPFPVKTVPPQTIDKIVG 106
           +YG  +V   ++     K   +L  K    +L     +       P+         KI G
Sbjct: 4   IYGRKSVLETIDAGENIKKAHILDNKGKNHKLIDKIINKLEDKNVPIFFEDKDYFSKISG 63

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               HQG+ +E        LD +++ + LM+LD + DPHN+GAI+RSA AF  DGI+ ++
Sbjct: 64  ---NHQGVEIEVEDYKYKDLDDLKDKKRLMILDQIEDPHNLGAIIRSAEAFGFDGIVISE 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   ++ + K+++GA+ +I    + N+  A++++    F   GL+ ++   + Q    
Sbjct: 121 RRSAKVNSTVYKTSAGAINNIDIAMVKNINRAIKEIKEENFWVYGLAGEADGDITQTDLT 180

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            KIAL++G EGKGL    +E    +  + M G I +LN S A+A+A+Y +   
Sbjct: 181 GKIALVVGNEGKGLSRLVRENCDGLIKIPMLGKINSLNASVASAIAIYESLRQ 233


>gi|85057748|ref|YP_456664.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789853|gb|ABC65585.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 235

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 5/231 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG + +  A+    RKI+QL   +     L       H    + V  + +  +  K+
Sbjct: 1   MIIYGKNPIKEAIK-AQRKIYQLYLDEKIKDHLFIMFLQKHNIAYQLVDKKFLYDLT-KQ 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
             HQG+A          LD   +S   Q  ++LD +NDPHN+GAILR+  A + DG+I +
Sbjct: 59  KTHQGIAANVCDYTFYDLDTYLDSTKFQKFLILDAINDPHNLGAILRTVEACALDGVIMS 118

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K+     ++ +AK + GALE+     ++NL   + K+       +G  S+S +   Q  K
Sbjct: 119 KKNQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQIPK 178

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           N  + +I+G EG G+R   ++    +  + M G I +LNVS AAA+ +Y T
Sbjct: 179 NSSLGIIVGNEGTGIRHLLKKQCDLLVKIPMYGKINSLNVSVAAALMIYST 229


>gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
 gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
 gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1]
 gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169]
 gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1]
 gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1]
 gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1]
 gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8]
 gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7]
 gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72]
 gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1]
 gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E]
          Length = 290

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 83/292 (28%), Positives = 135/292 (46%), Gaps = 29/292 (9%)

Query: 6   KKKSEKIF--SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           KK+S+K    S K S   KL + H   K            ++P+N + YG+H VS  +  
Sbjct: 2   KKRSQKTDNQSFKSSSKEKLNKPHHQAK-----------PAKPKNPYFYGIHAVSMLIKR 50

Query: 64  PSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116
              ++  L        +      L   +       ++    + + ++ G +  HQG+   
Sbjct: 51  RPEEVLGLFIQLRDDGQMSSEHQLIVQSAKHFGISIQNAHRERLTELCGSQQ-HQGVVAL 109

Query: 117 -ETAPLLSPT-LDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
             TAP+   T LD +  ++  L +VLD + D HN+GA LR+A A   D +I  +  S   
Sbjct: 110 ARTAPMADETILDNLLMQDDVLFLVLDQITDAHNLGACLRTACAMGVDAVILPRHQSAPI 169

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIAL 231
           +  +AK + GA E IP I ++NL   L+KM   G    G + D S KP  +     K+A+
Sbjct: 170 TPTVAKVSVGASEVIPVISVTNLARTLEKMKKSGVFIFGTALDKSAKPAFECDFGGKVAI 229

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIK---ALNVSNAAAVALYITQNHF 280
           I+G+EG G+R  TQ    ++ ++ M  ++    +LNVS A  + LY      
Sbjct: 230 IMGSEGDGMRRLTQTMCDTLVYIPMAEVLDRPQSLNVSVATGMVLYEVMRQR 281


>gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 236

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 110/235 (46%), Gaps = 7/235 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +++G +TV+A L +  +     L  K     +   A       V+ V    +DK+   + 
Sbjct: 4   YIFGKNTVTAYLKSGQKPKNLYLFNKGNYQEIVALAK-EQGIRVQFVDKFRLDKMA--DG 60

Query: 110 VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           VHQG+ +E       +L  +     + L+++ D + DPHN+GAILR+  A   DG++  K
Sbjct: 61  VHQGVVIEIQDYKYHSLQEIIKGAKNNLIVLCDQLEDPHNLGAILRTCDACGVDGVVVGK 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK 225
             S   ++ +AK ++GA+  +     +N+  A+ ++   G+  +    +       +   
Sbjct: 121 HRSVGLTSTVAKVSTGAINTVKVAEATNMVKAIAELKEAGYWVVAAENAVDAVDYTEFNV 180

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + L++G+EGKG+    ++    +  + M G + +LNVS A  V L+      
Sbjct: 181 DMPLVLVVGSEGKGISRLVKKECDILTTIPMQGSVNSLNVSVATGVLLFDIVRRR 235


>gi|89055292|ref|YP_510743.1| RNA methyltransferase TrmH, group 3 [Jannaschia sp. CCS1]
 gi|88864841|gb|ABD55718.1| RNA methyltransferase TrmH group 3 [Jannaschia sp. CCS1]
          Length = 260

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 92/248 (37%), Positives = 139/248 (56%), Gaps = 9/248 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++ +  +  E ++L+G+H V  AL NP R++ +L+ + NA  +L  DA        +  
Sbjct: 11  KERGKRAAAAETIWLFGLHAVRDALANPDRQVLRLVVSLNAQTKLA-DAIAARGLEAEIA 69

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAIL 151
            P+     +   +VHQG A+E  PL      A+         ++++LD V+DPHN+GAIL
Sbjct: 70  DPRKFPVPLDPGSVHQGAAVEVKPLDWGDWRALARGDGAERSVVVLLDRVSDPHNVGAIL 129

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I   R+S  E+  LAK+ASGALE +PY RI NL DA++ + + GF  +G
Sbjct: 130 RSAEVFGARAVIAPARHSAPETGALAKTASGALERMPYARIGNLGDAMEALKADGFWMVG 189

Query: 212 LSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L+ +   P++       +  IAL+LGAEG GLR +T+     +A +       +LNVSNA
Sbjct: 190 LAEEGAAPIDAVAARHTDSNIALVLGAEGPGLRERTRGLCDELAKIPFARDFGSLNVSNA 249

Query: 269 AAVALYIT 276
           AAVALY  
Sbjct: 250 AAVALYAL 257


>gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71037626|gb|AAZ17934.1| probable RNA methyltransferase, TrmH family, group 3 [Psychrobacter
           arcticus 273-4]
          Length = 256

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 15/243 (6%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGK 107
           YG+H + A L         L   +         A +         ++      + ++ G 
Sbjct: 8   YGIHAIDALLEYRPLDGLSLFVQQGRETDSHVQAIMAQARDNGISIQPTQKDKLTQLCGS 67

Query: 108 EAVHQGLALETAPL---LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+ L   PL       LD +  R   LL+VLD + D HN GA LR+AVA   D +
Sbjct: 68  -PQHQGVVLNARPLGFADEGLLDTLAGREDCLLLVLDQITDAHNFGACLRTAVAMGVDAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLE 221
           I  K ++ S +  +AK + GA E +P + ++NL   L K+ + G    G + ++  KPL 
Sbjct: 127 ICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNADAKPLH 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALYITQ 277
                 KIA+I+G+EG+G+R  T E+   + ++ M     G +++LNVS A  +ALY   
Sbjct: 187 TADLTGKIAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEIN 246

Query: 278 NHF 280
              
Sbjct: 247 RQR 249


>gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
           KBAB4]
 gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
           KBAB4]
          Length = 254

 Score =  231 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++          F+ G H V  AL      + 
Sbjct: 2   KNIDSVQNPRV-------KQWKKLQTKKERDNKA----LFFVEGFHLVEEALKAG--VVT 48

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+            +  
Sbjct: 49  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 102 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +    + 
Sbjct: 162 VK-GNLEEWVDKLKENNVPVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEILAKSD 220

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 221 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 252


>gi|237710747|ref|ZP_04541228.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|265750421|ref|ZP_06086484.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_33FAA]
 gi|229455469|gb|EEO61190.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|263237317|gb|EEZ22767.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_33FAA]
          Length = 249

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 15/243 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD--ANLPHP-FPVKTVPPQTIDKIVG 106
            ++GV  V  A+    R+I ++L  K+  + L  +  A L +   PV+ VP + I++I  
Sbjct: 1   MIFGVRAVIEAIQ-AGREIDKVLVKKDIQSELSKELFACLKNTLIPVQRVPVERINRITR 59

Query: 107 KEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    + +         P L     + L ++LD + D  N GAI R+      
Sbjct: 60  K--NHQGVVAFISSVTYQKTENLVPFLFEEGKTPLFVMLDGITDVRNFGAIARTCECAGA 117

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II   + S S +A   K+++GAL  +P  R  +LT+ ++ +   GF+ +  +      
Sbjct: 118 DAIIIPSKNSVSVNADAMKTSAGALHTLPVCREQSLTNTIKYLKDCGFKIVAATEKGDYD 177

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--Q 277
             +    D + +I+GAE  G+  +          + + G I++LNVS AA + +Y    Q
Sbjct: 178 YTKANYKDPVCIIMGAEDTGVPYEHLSLCDEWIKIPLMGKIESLNVSVAAGILIYEAVKQ 237

Query: 278 NHF 280
             F
Sbjct: 238 RGF 240


>gi|283795459|ref|ZP_06344612.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
 gi|291077120|gb|EFE14484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. M62/1]
 gi|295091144|emb|CBK77251.1| rRNA methylase, putative, group 3 [Clostridium cf. saccharolyticum
           K10]
          Length = 247

 Score =  231 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 108/243 (44%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A  +     ++F L   ++   +            +  V  + +D++
Sbjct: 4   EELTIEGRNAVLEAFRSGKTIDRLFVLDGCQDGPVKSITREARKQDTIINYVSKERLDQL 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A      ++ +            L +LD + DPHN+GAI+R+A   
Sbjct: 64  -SETGKHQGVLAYAAAYKYAQVEDMLRAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GAL + P  +++NL+  ++++   G   +      +
Sbjct: 123 GAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLSATIEELKERGLWFVCADMGGE 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + +      I L++G EG+G+    +E    +A + M G I +LN S AA V  Y   
Sbjct: 183 -SMYRLNLKGPIGLVIGNEGEGVSRLVKEKCDMVASIPMKGDIDSLNASVAAGVLAYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|114778983|ref|ZP_01453770.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
           ferrooxydans PV-1]
 gi|114550782|gb|EAU53352.1| RNA methyltransferase, TrmH family, group 3 [Mariprofundus
           ferrooxydans PV-1]
          Length = 247

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 15/244 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVG 106
            L G+H V  AL+     I +LL  K     RL+   +L     ++   VP + + ++  
Sbjct: 3   VLAGIHAVKHALDAGD-SIDELLIEKGKHHPRLNELIHLAKKHSIRFSFVPKEALARLA- 60

Query: 107 KEAVHQGLAL-------ETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +   HQG+         +  P     L  V    + ++++LD V DPHN+GA +R+A A 
Sbjct: 61  EGVPHQGVVAKMVAAGAQAVPTFEAWLKTVDMETAPMVLLLDQVTDPHNLGACVRTAEAA 120

Query: 158 SCDGIITTKRYSPSE-SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
            C  +I  K ++    S V+AK+A GAL  +P +R+ N+   ++++   GF T+GL+ ++
Sbjct: 121 GCAAVIVLKDHAADVHSPVVAKAACGALSRLPVLRVINMKRCIEQLQQQGFWTVGLAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  +     +   A+++G+E KG+R   +ET   + H+ MPG++++LNVS A  VAL+  
Sbjct: 181 ELSIYDAKLSGATAVVMGSEDKGVRRLVRETCDQLIHIPMPGVVESLNVSVATGVALFEI 240

Query: 277 QNHF 280
               
Sbjct: 241 NRQR 244


>gi|152964880|ref|YP_001360664.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
           radiotolerans SRS30216]
 gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
           radiotolerans SRS30216]
          Length = 321

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 14/253 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKT 95
           +R     E  ++ G +++  AL      I  +        +   +    A      P+  
Sbjct: 71  ARRKPAGETEWIAGRNSIVEALR-AELPITGIYVASRIETDERVKEILAAAGDKGIPLLE 129

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRN---SQLLMVLDHVNDPHNIG 148
              Q +D+   + AVHQG+A    P         LD   +     L++ LD V DP N+G
Sbjct: 130 ASRQDLDRHT-ENAVHQGVAATVPPYDYAHPMDLLDRAADSGRPALVVALDGVTDPRNLG 188

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RS  AF   G++  +R +   +A   K+++GA    P  R +NL  A+++    G  
Sbjct: 189 AVVRSVAAFGGHGVVVPERRAAGMTASAWKTSAGAAARTPVARATNLVRAIEEYQKAGLF 248

Query: 209 TIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +GL ++    L Q  + +  + L++GAEG GL    +E    +  + M G  ++LN   
Sbjct: 249 VVGLDAEGDVLLPQLKLADGPLVLVVGAEGAGLSRLVREKCDQVVSIPMAGAFESLNAGV 308

Query: 268 AAAVALYITQNHF 280
           AA +ALY    H 
Sbjct: 309 AAGIALYEVARHR 321


>gi|260892311|ref|YP_003238408.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
           KC4]
 gi|260864452|gb|ACX51558.1| RNA methyltransferase, TrmH family, group 3 [Ammonifex degensii
           KC4]
          Length = 254

 Score =  231 bits (590), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 7/246 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPP 98
              +     +YG H V  AL    R ++++L  +    A              PV+ VP 
Sbjct: 2   DKKEGGAELVYGRHAVKEALL-AGRSLYKILVARGLGGAFFHELRSLAASRSVPVQIVPA 60

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + +D++  +  VHQG     +P    +LD +   +   L+VL ++ DP N+GAILR+A A
Sbjct: 61  EALDRLTAR-GVHQGCVALVSPYNYASLDEILATHPSCLLVLAYITDPRNLGAILRTAAA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              +G+I   R +   +A   K+++G  EH+   R++NL   L+ +   GF  +G  +D+
Sbjct: 120 VGVEGVIIPSRRAAGLTAEALKASAGGAEHVKVARVTNLAQTLRYLKEQGFWVLGAEADA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K  L +   N+ + +++G E  GL    +     +  +     +  LN S AAAV LY  
Sbjct: 180 KVSLWEAEWNEPLVVVIGGEDTGLGKVVRRECDVLVRIPTTAKMPCLNASVAAAVILYEV 239

Query: 277 QNHFAK 282
                K
Sbjct: 240 LRRQMK 245


>gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
 gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
          Length = 297

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 11/252 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPH--PFPVKT 95
           ++   +     ++ G + V   L      +  L+A+  +A  R+     L      PV  
Sbjct: 43  RAVKQAADAPEWVLGRNPVFECLRAKVPAVELLVASGIDADERVAESVRLAGNAGVPVTE 102

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIG 148
           V    +D+     A HQG+ L+  P             +      L++ LDH++DP N+G
Sbjct: 103 VARFELDRRSS-GAPHQGIGLKVKPYEYRHPADLLVEAEDSGRPALMVALDHISDPRNLG 161

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RSA AF   G++   R S S +A+  ++++GA   +P  +  NLT  L++    G  
Sbjct: 162 AVIRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLTRTLKEWQDRGLL 221

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL ++    L+  +  + +AL++G+EGKGL    +E+   +  + M G +++LNVS A
Sbjct: 222 LVGLDAEGDTSLDDFVGTEPLALVVGSEGKGLSRLVRESCDVVVSIPMSGQVESLNVSVA 281

Query: 269 AAVALYITQNHF 280
             V L       
Sbjct: 282 TGVVLGEIARQR 293


>gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 249

 Score =  231 bits (590), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGL- 66

Query: 109 AVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P   L    LD +       LL+ LD V DPHN+GA +R+A A     +
Sbjct: 67  PFHQGVVAAVRPHPTLNEKDLDQILAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSSDSKK-PL 220
           I  +  S S +    K A+G  E + +I+++NL   L  +      + IG   D    P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLDESAMPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|225010506|ref|ZP_03700977.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-3C]
 gi|225005335|gb|EEG43286.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-3C]
          Length = 246

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 9/244 (3%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  ++YG+  V  A+       K+F     +  L +   +           VP + +D+
Sbjct: 2   EKQTYIYGIRAVIEAIEAKETLDKVFIQKGLQGDLIKTLENLIRKQGLNTSYVPVEKLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  +   HQG+    +P+    LD         + + L ++LD ++D  N GAI+R+A  
Sbjct: 62  LAKQHNNHQGVVASISPIEFHELDPFVESVLETKEAPLFLLLDQLSDVRNFGAIIRTASC 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGII  K+ +   +A   K+++GA   +P I++ +L DA+  + + G Q I  +  +
Sbjct: 122 TGVDGIIIQKKGTAPVTADTIKTSAGAAFQVPIIKVDHLKDAVFHLQACGIQVIAATEKA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K  L +       A+++G+E  G+ P   + A + A L M G I +LNVS A  V LY  
Sbjct: 182 KNDLYEVSFTGPTAIVMGSEDMGITPSILKVANAQAKLPMQGPISSLNVSVACGVFLYEA 241

Query: 277 QNHF 280
               
Sbjct: 242 VRQR 245


>gi|87199385|ref|YP_496642.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135066|gb|ABD25808.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 271

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/222 (43%), Positives = 135/222 (60%), Gaps = 5/222 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L+G H V AAL NP+R   +L  T+ A+  +  D DA LP   PV+      + ++V K+
Sbjct: 36  LWGRHAVEAALTNPNRDAKKLWGTREAIQAMLDDHDAELPASLPVEYAQAADLGRLVAKD 95

Query: 109 AVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           A HQGL L+ APL    LD V      + ++VLD V DPHN+GAILRS  AF    ++T 
Sbjct: 96  APHQGLVLDCAPLDDVVLDDVLDEAEGRTIVVLDSVTDPHNVGAILRSCAAFDVAALVTQ 155

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
            R++P ES  LAKSASGALE +P++R+ NL+ AL++M   G+  IGL  D K      + 
Sbjct: 156 DRHAPPESGTLAKSASGALEIVPWVRVVNLSRALERMSEEGYWRIGLDGDGKAVFPAALP 215

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +  +AL+LGAEG+GLR    +   S+A L +   I++LNVSN
Sbjct: 216 SGPVALVLGAEGEGLRHNVAQHCDSIARLPIASAIESLNVSN 257


>gi|224368949|ref|YP_002603113.1| RNA methyltransferase (TrmH family protein, group 3)
           [Desulfobacterium autotrophicum HRM2]
 gi|223691666|gb|ACN14949.1| RNA methyltransferase (TrmH family protein, group 3)
           [Desulfobacterium autotrophicum HRM2]
          Length = 253

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 11/248 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQ 99
                   L G+H +  AL    RK + +L +K+   ARL     +      PV+     
Sbjct: 3   RKSEAVEILCGIHPIREALRAGRRKFYAILVSKDRSRARLAEILGVAQEQSIPVEITDTM 62

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILR 152
           T+D +    A HQG+A   +P  +   + +         ++ ++V++ + DP N GA++R
Sbjct: 63  TLDALTD-NARHQGVAARVSPFATVRAEGIVKQMPKGVSNRFILVIETLEDPQNFGALIR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A+    D I+  K  S S S  ++++++GA+EH     I+N    L+++ + GF   GL
Sbjct: 122 TALCAGVDHIMIPKERSASPSPSVSRASAGAMEHAEISLITNTAGLLRQLKAMGFWVAGL 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                 PL        + L++G E KG+RP  ++    +  L +   + +LN S A  +A
Sbjct: 182 DGQGTTPLFSADLTGNLVLVVGGEHKGIRPLVKKECDFLVSLPIKAGVTSLNASVAGGIA 241

Query: 273 LYITQNHF 280
           +Y      
Sbjct: 242 MYEALRQR 249


>gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 321

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 17/252 (6%)

Query: 37  NQKSRHTSQPEN---LFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--H 89
            Q++RH  +  +     + G + V+  +         L   +  +A  R+          
Sbjct: 62  QQRTRHRQKERSDNAEVIAGRNPVAECIRAGV-PASGLYVAQGIDADDRVTEAVRGAGSR 120

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVN 142
              V  V    +D++ G  A+HQGLAL+         + V           L++ LD V 
Sbjct: 121 GISVVEVQRAELDRMTG-GAMHQGLALQVPAYEYAHPEDVLTEAHNSGLPPLIVALDGVT 179

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GA++RSA AF   G+I  +R S   +AV  ++++G    +P  R  NLT  L+ +
Sbjct: 180 DPRNLGAVIRSAAAFGAHGVILPQRRSAGLTAVAWRTSAGTAAKLPVARAVNLTRTLKDL 239

Query: 203 HSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            S G   +GL +DS    ++ E+    + +++G+EG+GL    +ET      + M G ++
Sbjct: 240 KSEGLMVVGLDADSDITSDELELATGPLVVVVGSEGRGLSRLVRETCDQTVSIPMAGSVE 299

Query: 262 ALNVSNAAAVAL 273
           +LN S AA + L
Sbjct: 300 SLNASVAAGIVL 311


>gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
 gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
          Length = 260

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 5/251 (1%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K+  S   K ++  +     L G   V  AL +    I  L  T+  L            
Sbjct: 14  KRAASLKMK-KYRQKEGLFLLEGKRAVEEALASGW-TIRALFFTR--LPEGWEQQAENSS 69

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P   VP   + KI   E   Q +A                  +++VLD + DP N+G +
Sbjct: 70  LPWYEVPLPVLQKITATED-PQSVAALVELRREELAAFAPERGMVLVLDRIRDPGNLGTL 128

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A    G++  +  +   +  + +S  G+L H+P        +  +     G+   
Sbjct: 129 IRTADALGAAGVVLLENTADLYNPKVVRSTMGSLFHLPVFTGVKTGELEEWCRQHGYALW 188

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             + +  + + +    +K AL+LG+E +G+ P+    A     + M G  ++LNV+ A  
Sbjct: 189 ATALEGAEDMTRLTWPEKTALVLGSEAEGVSPEILAAADQKVKIPMAGHAESLNVAVAGG 248

Query: 271 VALYITQNHFA 281
           + ++     F+
Sbjct: 249 IVMFEAARAFS 259


>gi|220928862|ref|YP_002505771.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
 gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           cellulolyticum H10]
          Length = 269

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/284 (23%), Positives = 117/284 (41%), Gaps = 27/284 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I   ++  I  +K  H  K R  H  Y                   F+ G+  VS A
Sbjct: 1   MNYIQSSQNSTIKDIKSLHLKKNRDAHGLY-------------------FVEGIRFVSDA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP-----VKTVPPQTIDKIVGKEAVHQGLA 115
           ++N    I +++ ++  L  L+  + L          +  VP + I + V      QG+ 
Sbjct: 42  IDNGQ-SIAKIIISE-KLEGLNGGSELIEKVKGACSDISLVP-EKIFREVSDTQTPQGIL 98

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                        +     +++LD + DP N G I+R+A A     ++ +K      S  
Sbjct: 99  AVIKKNKYSFDKVITEGSSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPK 158

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + +S  G++ HIP     N+T+ ++ +    ++ I      K    QE    + A+I+G 
Sbjct: 159 VLRSTMGSVFHIPIFEGLNITEIIRVLKQNDYKVIASHLSGKNNYFQEDLTGRSAIIVGN 218

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E  G+  +T   A S+  + MPG  ++LN S AA+V +Y     
Sbjct: 219 EANGISDETAYMADSLVKIPMPGKAESLNASVAASVMIYEIVRQ 262


>gi|163816511|ref|ZP_02207875.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
 gi|158448211|gb|EDP25206.1| hypothetical protein COPEUT_02700 [Coprococcus eutactus ATCC 27759]
          Length = 264

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 104/248 (41%), Gaps = 11/248 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           + +  E   + G + V  A  +     K++ L   ++ +              +  +   
Sbjct: 16  NENAEEAFVIEGRNAVLEAFRSGKTIDKLYVLDGCRDGVVNSIVREAKKQDTVINYLSKD 75

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            ++++  +   HQG+    A      ++ +              +LD + DPHN+GAI+R
Sbjct: 76  KLNQM-SQAGKHQGVIAHAAAYKYAEIEDMFALAESRGEDPFFFILDEIEDPHNLGAIIR 134

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G+I  KR +   +A + K+++GA+ + P  +++N++  ++++   G      
Sbjct: 135 TANLCGAHGVIIPKRRAVGITATVVKASAGAINYTPVAKVTNISKTIEELKERGMWFACA 194

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             D +  + +      + L++G EG G+    +E    +  + M G I +LN S AA V 
Sbjct: 195 DMDGE-LMYKCNLTGSLGLVIGNEGNGVSRLVKEKCDYVVSVPMKGDIDSLNASVAAGVL 253

Query: 273 LYITQNHF 280
            Y      
Sbjct: 254 AYEVVRQR 261


>gi|330838632|ref|YP_004413212.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
 gi|329746396|gb|AEB99752.1| RNA methyltransferase, TrmH family, group 3 [Selenomonas sputigena
           ATCC 35185]
          Length = 278

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 127/270 (47%), Gaps = 17/270 (6%)

Query: 24  RRNHRDYKKMQSFNQKS-----RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA- 77
           ++  R  K+ ++  ++      R  +   +  L G + V  AL    R I ++L  + A 
Sbjct: 4   KQKKRPAKEERTVLKRGGRQEERRDAPSADEILVGRNAVFEALK-AGRGINRILVAQGAK 62

Query: 78  --LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
                           PV+    + +D++   +  HQG+    AP+   +LD V      
Sbjct: 63  EAALAPLLSLAREQGVPVRASKREKLDQLA-PDMRHQGVIAYAAPVAYASLDDVFACAEE 121

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                LL++LD + DPHN GA+LR+A A    G++  +R   + +A +AK+++GA+EH+ 
Sbjct: 122 KGEPPLLLLLDEIEDPHNFGALLRTADAAGVHGVLVPERRGCALTATVAKTSAGAVEHVR 181

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +RI N+   ++++   G   +G      + +        + +++G+EGKGL    +ET 
Sbjct: 182 VVRIGNIVQEMKRLKERGLWFVGADMAGDEDMFHADLTGALCIVIGSEGKGLGRLVKETC 241

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  + M G I +LN S A A+ +Y  + 
Sbjct: 242 DFLVRIPMHGAINSLNASVAGALLMYEARR 271


>gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
 gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
          Length = 265

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++          F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDNKA----LFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPV 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +    + 
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPFAEVTPAGSFALIVGNEGSGVRQEILAKSD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
           erythropolis SK121]
 gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
           erythropolis SK121]
          Length = 323

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 15/240 (6%)

Query: 45  QPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQT 100
            PE +   G + V   L    P+  ++  + T++   RL     L       +  VP   
Sbjct: 78  GPETVL--GRNPVVECLRAGVPATALWVAVGTES-DDRLKESVQLAADAGISILEVPRTD 134

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D++     +HQG+AL+  P      D +           LL+ LD++ DP N+GA++RS
Sbjct: 135 LDRLSA-NGLHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGAVVRS 193

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             AF   G++  +R S S SAV  ++++GA   +P  R +NLT  L+   S G Q +GL 
Sbjct: 194 VAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLD 253

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++    L+    +  + +++G+EGKGL    +E   ++  + M G +++LN S AA V L
Sbjct: 254 AEGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVL 313


>gi|225017124|ref|ZP_03706316.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
           DSM 5476]
 gi|224950043|gb|EEG31252.1| hypothetical protein CLOSTMETH_01049 [Clostridium methylpentosum
           DSM 5476]
          Length = 258

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL    R+I  +   K   A                VK    + +D + G 
Sbjct: 13  IVGRNAVIEALK-AGREIDTIFVAKGERAGSIGQIVSLAKERGIVVKDADSRKLDAMSG- 70

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+A         T++ +         +  +++ D + DPHN+GA++R+A      
Sbjct: 71  GASHQGVAAIPCAASYATVEEILASAEQKGEAPFVIIADEIEDPHNLGALIRTAECAGAH 130

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  KR S S + +++K+++GA+ ++P  R+SNL   + ++   G    G   D +   
Sbjct: 131 GILIPKRRSASLTPIVSKTSAGAVSYLPVARVSNLALEIDRLKERGIWVYGADMDGENWC 190

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  +AL++G+EG+GL    +     +  L M G + +LN S A  + +Y      
Sbjct: 191 -ATDFSGGVALVVGSEGRGLGKLVRSKCDVIVSLPMRGQVNSLNASVAGGILMYEVMRQR 249


>gi|320527640|ref|ZP_08028814.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
 gi|320131961|gb|EFW24517.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
          Length = 238

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 11/235 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           F+YG + V   L + S KI Q+  +     R            +K V  +T+ ++   + 
Sbjct: 4   FVYGKNVVKQMLMDNS-KIKQIYMS--VDDRDVEQLAHKQRVQLKRVDKKTLTQMTKTDR 60

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E  P    ++D +          L+++LD + DPHN+GAILR+A A    G+I
Sbjct: 61  -HQGVVAEVDPYRLYSVDEIVQNVSEDGKGLIIMLDELEDPHNLGAILRTADAIGATGVI 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  +   +A +AK ++GA++ +    ++NL+  L+ +   G+  +G   D  +     
Sbjct: 120 FKKTNAVGLTATVAKVSAGAIDTVKCASVTNLSRTLEDLQKKGWWAVGTDMDG-QDYRSV 178

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +    LI+G EGKG+    +E    +  L M G I++LN + +A + +Y   N
Sbjct: 179 KYDFNTVLIIGNEGKGISRLLREKCDFVVSLPMRGKIESLNAAVSAGILMYSIYN 233


>gi|149201824|ref|ZP_01878798.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           TM1035]
 gi|149144872|gb|EDM32901.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           TM1035]
          Length = 258

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/239 (35%), Positives = 140/239 (58%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  +  E ++L+G+H V  AL NP+R+  +L+ TKNA  +L+  A        + V
Sbjct: 10  KEQAKRAAASETVWLFGLHAVRDALENPAREKLRLIVTKNAADKLEA-AIAASGITPEEV 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151
            P+  +  +   +VHQG ALE  PL    +  V     R +  +++LD V DPHN+GAIL
Sbjct: 69  DPRKFNAPLDPGSVHQGAALEVKPLDWGPMAEVCLGDGRTAPRVVLLDRVTDPHNVGAIL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I  + ++  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + G+  +G
Sbjct: 129 RSAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYTVLG 188

Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L+ +++  +E  +   ++  +AL+LGAEG GLR +T+E   ++  +       +LNVSN
Sbjct: 189 LAGEAELTIEAALEGKRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247


>gi|15672589|ref|NP_266763.1| tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723502|gb|AAK04705.1|AE006293_11 tRNA/rRNA methyltransferase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406108|gb|ADZ63179.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis CV56]
          Length = 252

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 118/277 (42%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K ++KI   +     K R+N                     +  + G H +  A
Sbjct: 1   MEIISSKDNKKIKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L    R I Q+   +N L +L        L     V  V  + +  +   E+  QGL  E
Sbjct: 40  LK-AGRSIKQIFVEENKLTKLTEMIGSEKLLTDLSVNLVSKEVLKSLADSES-PQGLIAE 97

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              +    +D   ++   ++L++V DP N+G ++R+A A     +I     +   S  + 
Sbjct: 98  VTKI-EEVIDF--SAAKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVM 154

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+P +R++   D   ++   G   +  +  +     + I     ALI+G EG
Sbjct: 155 RSMQGSNFHLPLVRMAK-EDCFAQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+  +  + A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 214 AGVSDEAVKAADKLVHIDMPGQAESLNVAVAAGILMF 250


>gi|294101781|ref|YP_003553639.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
           colombiense DSM 12261]
 gi|293616761|gb|ADE56915.1| RNA methyltransferase, TrmH family, group 3 [Aminobacterium
           colombiense DSM 12261]
          Length = 298

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 127/284 (44%), Gaps = 14/284 (4%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           SK  S+K +S K     K R N + Y K + + +      Q +   ++G   V   L   
Sbjct: 10  SKPDSKKPYSRK--MENKKRENQKPYGK-KPYIKMPDVRKQIDEDLIWGRQPVLDLLQYS 66

Query: 65  SRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            +K  ++  ++ A      +          P + V    +D++   E  HQG   +   +
Sbjct: 67  PQKCLKVWISERAHPSFSGEVMTLARSTKVPFQKVASTLVDEMCPGE-NHQGAVAKITMV 125

Query: 122 LS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                    PTL       LL+VLDH+ DPHN+GAI+R++ A     ++ +KR S     
Sbjct: 126 EQLDMEDFLPTLKTKEGPILLVVLDHILDPHNLGAIIRTSEAAGATAVVYSKRRSALPGG 185

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + K ++GA   +P I ++N+   + ++   GF  +GL  ++ + L      DK +L++G
Sbjct: 186 TVVKVSAGAALRVPMISVTNIAQTITRLQEEGFWVVGLDHNAPQSLWGATYPDKSSLVVG 245

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AEG+GL     +    +  + + G   +LN   AAA+ ++    
Sbjct: 246 AEGEGLSRLVAQRCDMLLRIPITGKTGSLNAGVAAALGMFEWAR 289


>gi|226304179|ref|YP_002764137.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 325

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 13/239 (5%)

Query: 45  QPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTI 101
            PE +   G + V   L    P+  ++  + T+ +   +            +  VP   +
Sbjct: 80  GPETVL--GRNPVVECLRAGVPATALWVAVGTESDDRLKESVQRAADAGISILEVPRSDL 137

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D++     +HQG+AL+  P      D +           LL+ LD++ DP N+GA++RS 
Sbjct: 138 DRLSA-NGLHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGAVVRSV 196

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G++  +R S S SAV  ++++GA   +P  R +NLT  L+   S G Q +GL +
Sbjct: 197 AAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDA 256

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +    L+    +  + +++G+EGKGL    +E   ++  + M G +++LN S AA V L
Sbjct: 257 EGDTTLDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGPVESLNASVAAGVVL 315


>gi|281491073|ref|YP_003353053.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
 gi|281374831|gb|ADA64351.1| 23S rRNA methyltransferase [Lactococcus lactis subsp. lactis KF147]
          Length = 252

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 117/277 (42%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K ++KI   +     K R+N                     +  + G H +  A
Sbjct: 1   MEIISSKDNKKIKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L    R I Q+   +N L +L              V  V  + +  +   E+  QGL  E
Sbjct: 40  LK-AGRSIKQIFVEENKLTKLTEMIGAEKSLTDLSVNLVSKEVLKSLADSES-PQGLIAE 97

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              +    +D   ++   ++L++V DP N+G ++R+A A     +I     +   S  + 
Sbjct: 98  VTKI-EEVIDF--SAAKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADIYSPKVM 154

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+P +R++   D   ++   G   +  +  +     + I     ALI+G EG
Sbjct: 155 RSMQGSNFHLPLVRMAK-EDCFAQLKKAGISILTTTLSANSVSYKIINEPHFALIMGNEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+  +  + A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 214 AGVSDEAVKAADKLVHIDMPGQAESLNVAVAAGILMF 250


>gi|229817008|ref|ZP_04447290.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
           20098]
 gi|229785753|gb|EEP21867.1| hypothetical protein BIFANG_02263 [Bifidobacterium angulatum DSM
           20098]
          Length = 333

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 137/306 (44%), Gaps = 26/306 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++    +      R      ++ +  +  + ++      ++G ++V  AL
Sbjct: 25  KGPTPKAEDRVYHKAYAAKKAADRRKMSDPRLAARRRADKFSTGNTTDLVFGRNSVLEAL 84

Query: 62  NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               PS  ++ +     +   R        H   +       +D+I  + + HQG+ L+ 
Sbjct: 85  RVGVPSNTLYVMSRIEHDDRTREIVKIASAHGLRMMEADRLEMDRIA-RSSNHQGVILKV 143

Query: 119 APLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAF 157
            P    +L  + +                       L + LD V DP N+GA++RSA AF
Sbjct: 144 EPYQYSSLAELADRADKKSRAMEAANSAAARISARPLFIALDGVTDPQNLGAVIRSAAAF 203

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ + + G+  +GL     
Sbjct: 204 GANGVILPERRSASVTAAAWKVSAGAAAHLPVCRVVNLTKAIEALKARGYYVVGLDGGGD 263

Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K + E   + D + ++LG+EGKGL    +E   ++A + +   +++LN S AA ++LY  
Sbjct: 264 KLVGETGFETDPLVVVLGSEGKGLSRLVREACDAIAGIPISSQVESLNASVAAGISLYAV 323

Query: 277 QNHFAK 282
            N   K
Sbjct: 324 ANERRK 329


>gi|118602547|ref|YP_903762.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567486|gb|ABL02291.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 247

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 11/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPH--PFPVKTVPPQTIDK 103
           +++ +   H V A L +      ++    K    RL+   +  +     V+      +DK
Sbjct: 3   KSIIITSFHAVQAQLKSNPTCFIKVFILNKRCDKRLNTLTSEFNNFGISVQRCTKIQLDK 62

Query: 104 IVGKEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+A E      P        +  + N+  +++LD + DP N+GA LRSA A
Sbjct: 63  L-SNHQTHQGVAAEILLPTLPDQGELISYVSKLDNAGFILILDSIQDPRNLGACLRSANA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                ++  K  S   ++++ K+++GAL  +   +++NL+  ++ +       IGL    
Sbjct: 122 AGVHCVVINKNGSAPINSLVHKTSAGALNQLKIFQVTNLSRTIKALQQKNIWVIGLDGSV 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + Q       A+I+GAEG GLR  T+++   +A + M G +++LNVS A  V L+  
Sbjct: 182 NISIYQIDLTIPNAIIMGAEGSGLRRLTKQSCDQLAKIPMQGKVESLNVSVATGVTLFEV 241

Query: 277 QNHF 280
               
Sbjct: 242 NRQR 245


>gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31]
 gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31]
          Length = 278

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 10/258 (3%)

Query: 17  DSHYAKLRRNH-----RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-FQ 70
            SH  +  R       RD++     N K          +++G H V AAL+NP+R    +
Sbjct: 2   SSHSERNDRKKPSSPGRDFRSKPRENNKFSKGQGDAKDWIWGTHAVEAALSNPARPAPKR 61

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LLAT +   RL  +        +  +    I + +   AVHQG+AL+     + ++  + 
Sbjct: 62  LLATADRAKRLAPNLAKAPFLTI--MEGAEIARQLPTGAVHQGVALKIDEPEALSVYDLG 119

Query: 131 NSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                LL++LD + DP NIGAI RSA AF   G+I   R++P+ + VLAK+A GA++ I 
Sbjct: 120 TPAQGLLVMLDQITDPQNIGAIFRSAAAFGARGVILQDRHAPALTGVLAKTAVGAVDKIA 179

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           Y R+ NL+ AL+++   G++ + L+ ++++ L+Q +      L+LG+EG+G+R    E  
Sbjct: 180 YARVVNLSRALEELADLGWRAVALAGEAQQTLDQVLDGRPTVLVLGSEGEGVRRLVSEHC 239

Query: 249 TSMAHLHMPGIIKALNVS 266
            +M  + MPG  ++LNVS
Sbjct: 240 DAMGKIAMPGGFESLNVS 257


>gi|193212230|ref|YP_001998183.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
           NCIB 8327]
 gi|193085707|gb|ACF10983.1| RNA methyltransferase, TrmH family, group 3 [Chlorobaculum parvum
           NCIB 8327]
          Length = 257

 Score =  230 bits (588), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 9/246 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQ 99
             +P    +YG + V   L +    + ++     T +   +           P      +
Sbjct: 11  APEPREQVVYGRNAVIELLQSKPESVEKIYLQFNTSHPKLKEIVITARRLKIPCGKARME 70

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154
            +  I G     QG+      +   TLD V      +S LL++L  + DPHN+GAI+R+A
Sbjct: 71  KLTLISGTAKN-QGVCALLTSVTFYTLDEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A + D +I  +      SA + K+++GAL H+   ++ +L   L  +H  GF  +    
Sbjct: 130 EAVAADSVIMIEGKGAPISATVHKASAGALSHMRVCKVKSLVKTLDLLHERGFSIVAADM 189

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +++             L++GAEGKGL  +T++    +  + M G +++LNVS AA V LY
Sbjct: 190 EAEHNHTDIDWKRPTVLVMGAEGKGLGSETRKRCDQIVRIPMAGCVESLNVSVAAGVMLY 249

Query: 275 ITQNHF 280
                 
Sbjct: 250 EAMRQR 255


>gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 250

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 127/267 (47%), Gaps = 18/267 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           +  ++ +   K+    +++KK+ +  ++ +     E   + G H V  AL   + +I ++
Sbjct: 2   LKHIQSAKNPKI----KEWKKLLTKKERDK----TETFLVEGFHLVEEALK--ANQIAEI 51

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           + ++N      WD       PV  V  + I ++   E   QG+    +    P+ + V+ 
Sbjct: 52  IISENKDMPPGWDYG---DIPVTMVTEEIIGQLADTE-TPQGIFAVCS--QEPSSEEVKG 105

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            + L++ D V DP N+G ++R+A A   D +I  +    + +  + +SA G+  H+P +R
Sbjct: 106 KRFLLI-DAVQDPGNLGTMIRTADAAGIDAVIVGEGSVDAYNPKVLRSAQGSHFHLPVLR 164

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             NL+D + ++        G + ++ +   +   +D  AL++G EG G+  +      + 
Sbjct: 165 -GNLSDWIGRLKESKVPVYGTALENAREYTKYESSDSFALLVGNEGNGVNKELLANTAAN 223

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278
            ++ + G  ++LNV+ AA + LY  + 
Sbjct: 224 LYIPIFGKSESLNVAVAAGILLYHLRK 250


>gi|85707218|ref|ZP_01038304.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
 gi|85668272|gb|EAQ23147.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp. 217]
          Length = 258

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 86/239 (35%), Positives = 140/239 (58%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  S  E ++L+G+H V  AL NPSR+  +L+ TKNA  +L+  A        + V
Sbjct: 10  KEQAKRASASETVWLFGLHAVRDALENPSREKLRLIVTKNAADKLEA-AIAASGITPEEV 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151
            P+  +  +   +VHQG ALE  PL    +  V     R +  +++LD V DPHN+GAIL
Sbjct: 69  DPRKFNAPLDPGSVHQGAALEVKPLDWGPIGEVCLGDGRTAPRVVLLDRVTDPHNVGAIL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I  + ++  E+  LAK+ASGALE  PY+R+ NL DA+ ++ + G+  +G
Sbjct: 129 RSAEVFGARAVIAPRHHAAPETGALAKTASGALERQPYLRVRNLADAIIELQAMGYLVLG 188

Query: 212 LSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L+ +++  +E  +   ++  +AL+LGAEG GLR +T+E   ++  +       +LNVSN
Sbjct: 189 LAGEAEMTIEAAMEGRRDRPVALVLGAEGPGLRERTREVCDALVRIEFASDFGSLNVSN 247


>gi|299771793|ref|YP_003733819.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
 gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
          Length = 249

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 115/248 (46%), Gaps = 12/248 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTID 102
            +  + YGVH+V + L     ++  L   K     RL     L       V+     +++
Sbjct: 2   AKQEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61

Query: 103 KIVGKEAVHQGLALETAP---LLSPTLD-AVRNSQ--LLMVLDHVNDPHNIGAILRSAVA 156
           K+ G    HQG+     P   L    LD  +R +   LL+ LD V DPHN+GA +R+A A
Sbjct: 62  KLAGL-PFHQGVVAAVRPHPVLNEQDLDQILRETPDALLLALDQVTDPHNLGACIRTAAA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSD 215
                +I  +  S S +    K A+G  E + +I+++NL   L  +      + IG   D
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180

Query: 216 SKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               PL++   +  + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY
Sbjct: 181 ESALPLQKCDFSGAVVIVMGAEDTGLRPITQAQCDHKVYIPMSGNLQSLNVSVATGMALY 240

Query: 275 ITQNHFAK 282
                 ++
Sbjct: 241 EACRQRSE 248


>gi|239625543|ref|ZP_04668574.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519773|gb|EEQ59639.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 247

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A  +     K+F L   ++   R        H   V  V  + +D+I
Sbjct: 4   EELTIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVNYVARERLDQI 63

Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A              +       L++LD + DPHN+GAI+R+A   
Sbjct: 64  -SETGKHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GAL + P  +++NLT A++ +   G   +       
Sbjct: 123 GAHGVIIPKRRAAGLTATVAKTSAGALNYTPVAKVTNLTAAMEDLKKKGMWFVCADM-GG 181

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + +      I L++G EG+G+    +E     A + M G I +LN S AA V  Y   
Sbjct: 182 DIMYKVNLKGPIGLVVGNEGEGVGKLVREHCDMTASIPMKGDIDSLNASVAAGVLAYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 313

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 119/280 (42%), Gaps = 20/280 (7%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------LFLYGVHTVSAALNN--PSRKIF-- 69
           A++R+ H+  +   + ++++     P           + G + V  AL    P+  ++  
Sbjct: 35  AEMRKGHKKNRIANAKSKQAVRRPAPRGRGGKGTSEMVVGRNPVVEALREGVPAVTLYVQ 94

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS------ 123
           Q +     +              +   P   +D++      HQGL L+  P         
Sbjct: 95  QFIDNDERVREALQLVAERGGVHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHAEDL 153

Query: 124 -PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 154 AAAAYDDGADPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERRAAGMTAGAWKTSAG 213

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241
                P  R +NLT AL+     G   +GL++D +  + + E     +A+++G+EGKGL 
Sbjct: 214 TAARTPVARCTNLTRALEAYRKQGIVVVGLAADGEHEIGDLEALGGPVAIVVGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA + LY      A
Sbjct: 274 RLVGETCDYRVRIPMPGGAESLNAGVAAGIVLYEAARRRA 313


>gi|297627018|ref|YP_003688781.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922783|emb|CBL57361.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 307

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 15/286 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN- 63
           + K  ++ +    ++ AK  +  R   +     + S         ++ G + V  AL   
Sbjct: 22  TPKAEDRTYH--KAYRAKQDQGPRKGTRPPHGAKPSSTGRGAAPDWVVGRNPVLEALQAN 79

Query: 64  -PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            P R+ +    ++ +   R  +     H   +  VP Q +DK+    AVHQG+AL+  P 
Sbjct: 80  LPVRRAYVAEGSEHDDRLREIFKYAAEHSLSLLQVPRQELDKLTD-GAVHQGVALQLPPY 138

Query: 122 LSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
               +D V         N  LL+  D + DPHN+GAI+RSA AF  DG+I  +R S S +
Sbjct: 139 EYADIDEVATKALGRDDNHGLLVACDGITDPHNLGAIIRSAAAFGADGVIIPERRSASLT 198

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
           A   K+++GA   +   +++NL   L+++   GF   GL+ ++   +      N  + L+
Sbjct: 199 ASAWKASAGAAARLRVAKVTNLNRGLERLAKAGFVIAGLAGEADTDIAGIPGVNGPLVLV 258

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +G+EG GL    +E    +  + +   +++LN S A A+ALY    
Sbjct: 259 VGSEGAGLSRMVREHCDVLVSIPITSEVESLNASVATAIALYEVSR 304


>gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
 gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
 gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
 gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
          Length = 265

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++          F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDNKA----LFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPV 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +    + 
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEILAKSD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
 gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
          Length = 252

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 118/268 (44%), Gaps = 19/268 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S+K+          + +KK+ +   + +         + G H V  A+ N    + 
Sbjct: 2   KQIDSVKNPQV-------KAWKKLHNKKDRDKQ----GLFMVEGFHLVEEAIKN-KDCVK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+  ++      W+ +      +  V    I K++      QG+        +   + +
Sbjct: 50  ELIIRESIEVPAQWNID---GIEITVVNEAII-KLLSDTETPQGIIAVC--FQTKHAEII 103

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q +++LD V DP N+G I+R+A A   D II  +      +  + +S  GA+ H+P 
Sbjct: 104 HTAQKVLLLDAVQDPGNLGTIIRTADAAGVDAIIVGEGSVDVYNPKVVRSTQGAIFHLPI 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  +L + +  +   G    G S  + K       +++ ALI+G EG G+  K  E   
Sbjct: 164 VK-GDLLEMISLLKERGIAVYGTSLQNGKVYTCVKPSNEFALIVGNEGNGVSEKVLEQTD 222

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ A+ + LY  +
Sbjct: 223 QNLYIPIYGKSESLNVAIASGILLYYLR 250


>gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|315446219|ref|YP_004079098.1| rRNA methylase, , group 3 [Mycobacterium sp. Spyr1]
 gi|254800512|sp|A4T5L0|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
 gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum
           PYR-GCK]
 gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium sp. Spyr1]
          Length = 314

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 13/252 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKT 95
            RH    +   + G + V   L    P+  ++  L T +A  RL     +       +  
Sbjct: 62  GRHKKTDDTEIVLGRNPVVECLRAGVPATALYVALGT-DADERLTESVQMAADRGISILE 120

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIG 148
           V    +D++     +HQG+AL+  P      D +           LL+ LD+++DP N+G
Sbjct: 121 VQRHDLDRMAA-NGLHQGIALQVPPYAYAHPDDLLRDAKSDAAPALLVALDNISDPRNLG 179

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RS  AF   G++  +R S S +AV  ++++GA    P  R +NL   L++    G Q
Sbjct: 180 AIVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQ 239

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +GL +     +++        +++G+EGKGL    +E    +  + M G  ++LN S A
Sbjct: 240 VVGLDAGGDTTIDEIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIPMAGPTESLNASVA 299

Query: 269 AAVALYITQNHF 280
           A V L       
Sbjct: 300 AGVVLAEIARQR 311


>gi|94268732|ref|ZP_01291270.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
 gi|93451488|gb|EAT02319.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
          Length = 302

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 108/257 (42%), Gaps = 28/257 (10%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLP--HPFPVKTV--PPQ 99
           QPE   ++G+H V+  L      + +L         R+     L   H  P+     PP 
Sbjct: 42  QPEASLVWGIHPVTELLRRRPGLVRELYLAGGRDDGRVAAIVELAASHRIPLDRAGLPP- 100

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM-----------------VLDHVN 142
                   E  HQG+A   AP    +L  +      +                 VLD + 
Sbjct: 101 -----AAAELPHQGVAARVAPPSPLSLAELLQRLPALGPEPASSPAASPPPLLLVLDSLQ 155

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GA+LRSA AF  DG+I  K  S   S  + K+A+G    +   R +NL  AL  +
Sbjct: 156 DPHNLGAVLRSAAAFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLAGALGTL 215

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              GF   G S ++   L +        L+LG E KG+RP  ++    +  + +   +++
Sbjct: 216 KKHGFWIYGASGEASGNLYETDFTGPTCLVLGNEQKGIRPLLKKHCDFLLAIPLAAGVES 275

Query: 263 LNVSNAAAVALYITQNH 279
           LNVS AA + L   +  
Sbjct: 276 LNVSVAAGIMLVEIRRR 292


>gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 330

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 30/288 (10%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENL------------------FLYGVHTVSAALNN-- 63
           R+ H   +   +  ++ R       +                   + G ++V  AL    
Sbjct: 43  RKGHPKQRAANAALKRERDAKSRAGMRRSGAGSRSGRGGAGAAELVVGRNSVVEALQGGV 102

Query: 64  PSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           P+  ++ Q     +   R  + A      P+   P   +D++ G    HQGL L+  P  
Sbjct: 103 PATALYVQQFLDTDDRVRDAFQAANERGVPLMEAPRAQLDQMTG-GLNHQGLVLQVPPYE 161

Query: 123 SPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
               D +           L++ LD V D  N+GA++RSA AF   G++  +R +   +A 
Sbjct: 162 YAHPDDLLEGAADAGQDALIVALDGVTDSRNLGAVVRSAAAFGAHGVVIPERRAAGMTAG 221

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILG 234
             K++SGA   +P  R +NLT AL+     G   +GL++D +  + + +  N  + ++ G
Sbjct: 222 AWKTSSGAAARLPVARATNLTRALESYQKAGVMVVGLAADGEAEIGDLDALNGPVVIVAG 281

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +EGKGL     ET   +  + MPG  ++LN   AA + LY      AK
Sbjct: 282 SEGKGLSRLVSETCDLLVRIPMPGQTESLNAGVAAGIVLYEAARLRAK 329


>gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 317

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/274 (24%), Positives = 114/274 (41%), Gaps = 13/274 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS----RKIFQLLATK 75
           +AK R  +   K+        R   +  N  + G + V  AL          + Q + + 
Sbjct: 45  HAKQRVANARAKQAARRPAPRRGGGKGTNELVVGRNPVVEALREGVPASMLYVQQFIDSD 104

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
             +      A       +   P   +D++      HQGL L+  P      + +      
Sbjct: 105 ERVREALKLAADRGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLLDAAAE 163

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G     P
Sbjct: 164 EGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTP 223

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET 247
             R +NLT AL+     G   +GL +D    +   E+ +  + ++ G+EGKGL     ET
Sbjct: 224 VARATNLTRALEAYKKAGLMVVGLDADGDTEVQNAEVLDGPVVIVAGSEGKGLSRLVAET 283

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +  + MPG  ++LN   A  V LY    H +
Sbjct: 284 CDVLVRIPMPGGAESLNAGVATGVVLYEVVRHRS 317


>gi|93004896|ref|YP_579333.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
           K5]
 gi|92392574|gb|ABE73849.1| RNA methyltransferase TrmH, group 3 [Psychrobacter cryohalolentis
           K5]
          Length = 256

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 15/243 (6%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGK 107
           YG+H + A L         L   +         + +         ++      + ++ G 
Sbjct: 8   YGIHAIDALLEYRPLDGLSLFVQQGRETDSHVQSIMAQARDNGISIQPTQKDKLTQLCGS 67

Query: 108 EAVHQGLALETAPL---LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+ L   PL       LD +  R+  LL+VLD + D HN GA LR+AVA   D +
Sbjct: 68  -PQHQGVVLNARPLGFADEGLLDTLAGRDDCLLLVLDQITDAHNFGACLRTAVAMGVDAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLE 221
           I  K ++ S +  +AK + GA E +P + ++NL   L K+ + G    G + ++  KP+ 
Sbjct: 127 ICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFGTALNANAKPIH 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALYITQ 277
                 K A+I+G+EG+G+R  T E+   + ++ M     G +++LNVS A  +ALY   
Sbjct: 187 AADLTGKTAIIMGSEGEGMRRLTTESCDELVYIPMSGNEHGNLQSLNVSVATGMALYEIN 246

Query: 278 NHF 280
              
Sbjct: 247 RQR 249


>gi|317126031|ref|YP_004100143.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
 gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
          Length = 320

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 10/253 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP--HPFPVKT 95
           +    ++  +  + G ++V  AL          +AT+ ++  R+     L      P+  
Sbjct: 69  RGPRRTKGSSEIVAGRNSVVEALRADIPVSTMFVATRIDSDDRVKEALKLATERGLPILE 128

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAI 150
            P   +D++    AVHQGLAL+  P        + +       L++ LD + DP N+GAI
Sbjct: 129 APRGELDRLTD-GAVHQGLALQVPPYEYADPRDLVDPEQPGVPLIVALDGITDPRNLGAI 187

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RS  AF   G++  +R S   +A   K+++GA   IP  +  NLT AL+     GF  +
Sbjct: 188 VRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARIPVAKAGNLTRALEDFKRAGFFVL 247

Query: 211 GLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           GL  D    L +  +  + + ++ G+EGKGL    +ET   +  + M   +++LN   A 
Sbjct: 248 GLDMDGDVQLPDLTLAAEPLVVVTGSEGKGLSRLVRETCDQIVSIPMSSAVESLNAGLAT 307

Query: 270 AVALYITQNHFAK 282
            VALY       +
Sbjct: 308 GVALYEIARQRRR 320


>gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614]
 gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp.
           JS614]
          Length = 314

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 121/272 (44%), Gaps = 15/272 (5%)

Query: 17  DSHYAKLRRNHRDYKKM-QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
            +      + H+  K+  +S  ++ +  +  +  ++ G ++V  AL      +  +   +
Sbjct: 39  KAKDRPYHQAHKAAKRAEKSATRRPKRKTAGDAEWVAGRNSVVEALRAGV-PVTGVYVAE 97

Query: 76  NALA----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
            A      R  +         ++ V    +D++ G  AVHQGLA    P      D + +
Sbjct: 98  GAERDGRLREAFATAAERRLNIQEVSRGELDRMTG-GAVHQGLAARIPPYEYAHPDDLLD 156

Query: 132 -------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L++ LD V DP N+GA++RSA  F   G++  +R S   +A   K+++GA 
Sbjct: 157 AAAESGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAA 216

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243
             +P  +  NL   L+     G   +GL++D    L      +  + +++G+EG GL   
Sbjct: 217 ARLPVAQTVNLVRQLKAYQEAGCMVVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRL 276

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             ET   +  + M   +++LN   AA+VALY 
Sbjct: 277 VSETCDQLVSIPMANQLESLNAGVAASVALYA 308


>gi|294010791|ref|YP_003544251.1| RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292674121|dbj|BAI95639.1| RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 246

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/237 (38%), Positives = 137/237 (57%), Gaps = 11/237 (4%)

Query: 38  QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++   T + +  F   YG H V AAL NP R + ++  T+ AL  LD    LP   P+  
Sbjct: 2   KRGNRTGKAKGTFPRFYGRHAVIAALANPDRVVRKIWGTREALNALD----LPPVLPIVY 57

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAI 150
                + ++V  +A HQG+  E  PL    L  V      + + ++VLD V DPHN+GAI
Sbjct: 58  ADGADLGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEAGQDDKRPVLVLDQVTDPHNVGAI 117

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA AF    I+T  R++P ES VLA+SASGALE +P++R+ NL  AL ++   G+  I
Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRI 177

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GL  ++++ L + I   ++AL+LGAEG+GLR  +      +A L +   +++LNVSN
Sbjct: 178 GLDGEAEQTLGEAIGTSRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234


>gi|313203183|ref|YP_004041840.1| RNA methyltransferase, trmh family, group 3 [Paludibacter
           propionicigenes WB4]
 gi|312442499|gb|ADQ78855.1| RNA methyltransferase, TrmH family, group 3 [Paludibacter
           propionicigenes WB4]
          Length = 255

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 115/250 (46%), Gaps = 13/250 (5%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVP 97
           ++  +PE   ++G+  V  A+      I ++L  ++    L+R  + A      PV+ VP
Sbjct: 5   KNKRRPEKDMIFGIRAVIEAIQAGKE-IDKILMRRDMTSELSRELFAALNGLQIPVQYVP 63

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
            + ++K+  K   HQG     +P+    ++ +            ++VLD V D  N GAI
Sbjct: 64  LEKLNKMTVK--NHQGAIAFISPVAYQRIEDIIPGIYEEGRMPFIVVLDGVTDVRNFGAI 121

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+      D I+   +   S +    K+++GAL  IP  R  NL +AL+ + S G + +
Sbjct: 122 ARTCECAGVDAIVIPTKGGASITGDAIKTSAGALLSIPVCREENLGNALKFIVSSGIKLV 181

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             S  + K   +    + IA+I+GAE +G+ P        M  + M G I +LNVS AA 
Sbjct: 182 AASEKATKNYTEAALTEPIAIIMGAEDEGVNPDHLRLCDEMVSIPMLGSIDSLNVSVAAG 241

Query: 271 VALYITQNHF 280
           V +Y      
Sbjct: 242 VLIYEAVRQR 251


>gi|303242604|ref|ZP_07329080.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
 gi|302589861|gb|EFL59633.1| RNA methyltransferase, TrmH family, group 3 [Acetivibrio
           cellulolyticus CD2]
          Length = 267

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 26/283 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN IS  ++  I                  K++++  +K ++  Q    F+ G+  V  A
Sbjct: 1   MNFISSSQNPVI------------------KEIKALKEK-KYRDQTGLFFIEGIRFVEEA 41

Query: 61  LNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           L     +I ++L +           +       +   V T+  +   ++   E   QG+ 
Sbjct: 42  LK-EKIEISKILVSDKLADVHGGKEILEQLENSNCCNVYTLTNKLYMEVTDTE-NPQGIL 99

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                          N    +VLD + DP N+G I+R+A A    G+I +K      +  
Sbjct: 100 AILNKKSISLESVYDNKNFFLVLDSLQDPGNMGTIIRTADAAGVTGVIVSKGCVDVYNPK 159

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + +S  G+L HIP     N+   L++M + G +         K   +    D IA+I+G 
Sbjct: 160 VLRSTMGSLFHIPICYSENILQTLEEMKNKGIRLCAAHLSGSKNYFELDYKDNIAIIVGN 219

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E  G+       +  +  + M G  ++LN S AA + +Y    
Sbjct: 220 EANGISDSVAGISNELVRIPMAGKSESLNASVAAGLLMYEVLR 262


>gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205]
 gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205]
          Length = 249

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 12/240 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILALAEPFGISVQKASRDSLEKLAGM- 66

Query: 109 AVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P   L    LD +       LL+ LD V DPHN+GA +R+A A     +
Sbjct: 67  PFHQGVVAAVRPHPTLNEKDLDQLMQQHPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSSDSKK-PL 220
           I  +  S S +    K A+G  E + +I+++NL   L  +      + IG   D K  P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLDEKALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +Q   +  + +++GAE  GLRP TQ        + M G +++LNVS A  +ALY      
Sbjct: 187 QQCDFSGSVVIVMGAEDTGLRPITQSQCDQTVFIPMAGDLQSLNVSVATGMALYEACRQR 246


>gi|114319742|ref|YP_741425.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226136|gb|ABI55935.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 246

 Score =  229 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 11/244 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDK 103
           E   LYG+H V AA    +  I  +   K    A+L             ++ V  + +D+
Sbjct: 3   EPELLYGLHAVRAAAACDADAIEAVWVEKGRRDAKLVRVLRSLEGRGLRIQRVSRKQLDE 62

Query: 104 IVGKEAVHQGLALETA---PLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  +  VHQG+A+      PL    LDA    +     L+VLD V DPHN+GA LRSA A
Sbjct: 63  LT-EGGVHQGVAIRYRGPRPLDDNDLDACLDGLSGPAFLLVLDQVQDPHNLGACLRSAEA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  +  +   + V+ K +SGA   +PY +++NL   L  +   G   +G + ++
Sbjct: 122 AGVHGVIAPRDRAAGLTPVVHKVSSGAAARVPYFQVTNLARTLAGLRDRGIWLVGAAGEA 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                +      +AL +GAEG+GLR  T+E    + H+ M G +++LNVS A  V L+  
Sbjct: 182 GAAHWEADLTGPLALCMGAEGRGLRRLTREACDLLVHIPMAGRVESLNVSVATGVVLWEA 241

Query: 277 QNHF 280
               
Sbjct: 242 LRQR 245


>gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
 gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
          Length = 265

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 21/272 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++          F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDTK----GLFFVEGFHLVEEALKAG--VVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I K++ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKVLRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++ H+P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFHLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL + + K+        G + ++  P  +       ALI+G EG G+R +      
Sbjct: 173 VK-GNLEEWVDKLKESNVSVYGTALENGVPFGEVTPAGSFALIVGNEGSGVRQEILAKTD 231

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G  ++LNV+ AA +  Y  Q+  A
Sbjct: 232 QNLYIPIYGGAESLNVAVAAGILTYYLQSPVA 263


>gi|262200970|ref|YP_003272178.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
           DSM 43247]
 gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
           DSM 43247]
          Length = 316

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 19/275 (6%)

Query: 24  RRNHRDYKKMQSFNQKS----RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-- 77
           R  H  +K+ ++  + +        +    ++ G + V   L         L    N+  
Sbjct: 44  RPYHPAHKRAKTAAKPAGRGAPRRKEDGPEYVLGRNPVLECLRAGV-PATALYVASNSEP 102

Query: 78  LARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
             R+     +     +    V    +D++     +HQG+AL+         D +      
Sbjct: 103 DERVAEAVKIAGDAGIALLEVGKPELDRL-STNGLHQGVALQVPEYTYAHPDDLLAAAKA 161

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                LL+ LD++ DP N+GA++RS  AF   G++   R S S +AV  ++++GA   +P
Sbjct: 162 SGTPALLVALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLP 221

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             + +NLT  L+     G Q +GL +D    L+         +++G+EGKGL    +E+ 
Sbjct: 222 VAQATNLTRTLKDWAESGAQLVGLDADGDVTLDDYDGTGPTVIVVGSEGKGLSRLVRESC 281

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
            S+  + M G +++LN S AA V L  +  Q   A
Sbjct: 282 DSILSIPMAGDVESLNASVAAGVVLAEFARQRRQA 316


>gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
 gi|148571048|gb|ABQ93107.1| RNA methyltransferase, TrmH family, group 3 [Psychrobacter sp.
           PRwf-1]
          Length = 261

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 26/253 (10%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALAR-----------LDWDANLPH--PFPVKTVPP 98
           YG+H + A L++       L   +    +            +    L       ++    
Sbjct: 8   YGIHAIHALLSHRPTDAMALFIQQGRAHKDSSTQDEADSTFEEILQLAEQMGVSIQEASR 67

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILRS 153
             +  + G    HQG+ L   PL       +      +  L +VLD + D HN+GA LR+
Sbjct: 68  DKLTALCGS-PQHQGVVLNARPLAMADEGEIASLAQSDDALFLVLDQITDAHNLGACLRT 126

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   D +I  K +S S +  +AK + GA+E +P I ++NL   ++ +   G    G +
Sbjct: 127 AAAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQAGVFVYGTA 186

Query: 214 SDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALNVSNA 268
            D+  K L       K+A+I+G+EG+G+R  T E    + ++ M G      ++LNVS A
Sbjct: 187 LDATAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSVA 246

Query: 269 AAVALYI--TQNH 279
             + LY    Q H
Sbjct: 247 TGMVLYEVSRQRH 259


>gi|209544876|ref|YP_002277105.1| TrmH family RNA methyltransferase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209532553|gb|ACI52490.1| RNA methyltransferase, TrmH family, group 3 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 321

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 95/233 (40%), Positives = 134/233 (57%), Gaps = 1/233 (0%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
             +LYG+H   AAL NP R+I Q+LAT++  A L    N P P          ++ + G+
Sbjct: 86  TYWLYGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGR 145

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +AVHQG+A+    L S  ++ +      L++LD V DP N+GAILRSA AF    ++  +
Sbjct: 146 DAVHQGIAVLADALPSLAIEDMTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVME 205

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R +P E+  LAK+ASGALE +P +R+ NL   L  + S  F  +GL +            
Sbjct: 206 RNAPDETGALAKAASGALEIVPLVRVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQ 265

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++AL+LGAEG GLR  T+E    +A L MPG +++LNVSNAAAVALY     
Sbjct: 266 RRVALVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELVRR 318


>gi|50083619|ref|YP_045129.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|52783290|sp|Q6FF50|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 248

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 12/240 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILELAEPFGISVQKASRDSLEKLAGL- 66

Query: 109 AVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P   L    LD +  +    LL+ LD V DPHN+GA +R+A A     +
Sbjct: 67  PFHQGVVAAVRPHPVLNEKDLDQLLQNNDQALLLALDQVTDPHNLGACIRTAAAMGIAAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSSDSKK-PL 220
           I  +  S S +    K A+G  E + +I+++NL   L  + +  F + +G   D K  P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTMLDEKALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  +A+++GAE  GLRP TQ       ++ M G +++LNVS AA +ALY      
Sbjct: 187 QKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIPMSGNLQSLNVSVAAGMALYEACRQR 246


>gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 314

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 126/280 (45%), Gaps = 18/280 (6%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQK----SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           +  A+ R NH+ YK   +  ++     R  +     ++ G ++V   L      I  L  
Sbjct: 37  TPRAEERPNHKVYKMKNAATKREAARPRRKTGDVAEWVAGRNSVLELLKATV-PIHGLYV 95

Query: 74  TKN--ALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            +      R+     L     V    +    +DK+ G  AVHQG+A +           +
Sbjct: 96  AEGTERDERMREIFKLAADQHVSLLEIGRVELDKLTG-GAVHQGIAAKLNAYDYADPRDL 154

Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L+++LD V DP N+GA++RSA  F   G++  +R +   +A   K+++G
Sbjct: 155 LALAAERGEPALIVMLDGVTDPRNLGAVIRSASGFGAHGVVIPERRAAQITAAAWKTSAG 214

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241
           A   +P  R++NLT  L+++   G   IGL++D    L   ++ +  + +++G+EGKGL 
Sbjct: 215 AAARVPVARVTNLTRTLKELQEEGLMVIGLAADGDVELPSSQMLDGPVVVVIGSEGKGLS 274

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET   +  + M   +++LN   AA +ALY       
Sbjct: 275 RLVGETCDELVSIPMSTGLESLNAGVAAGIALYAIARQRG 314


>gi|323490595|ref|ZP_08095800.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
           donghaensis MPA1U2]
 gi|323395687|gb|EGA88528.1| trmH family tRNA/rRNA methyltransferase yacO [Planococcus
           donghaensis MPA1U2]
          Length = 246

 Score =  229 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 13/240 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105
             + G + V  AL    R I ++   +    +               V++VP + ID + 
Sbjct: 4   EIIGGKNPVLEALRAD-RDINKIWIAEGVQKKGITELLQLAKDKGVIVQSVPKKKIDGLT 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  HQG+A   A     +LD +             ++LD + DPHN+G+I+R+A A  
Sbjct: 63  --DTNHQGIAAAVAAYNYASLDDLFDAATAKNEDPFFLILDELEDPHNLGSIMRTADAIG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  KR +   + V+AK+++GA+EH+P +RI+NL+  + ++   G    G  +    
Sbjct: 121 VHGLIIPKRRAVGLTGVVAKASTGAIEHVPVVRINNLSQTVDELKKRGVWIAGTDAKESV 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +      +A+I+G+EGKG+    +E    +  L M G + +LN S AA++ +Y    
Sbjct: 181 DYRRMDAALPLAVIIGSEGKGMSRILREKCDFLYQLPMIGHVTSLNASVAASLLMYEVYR 240


>gi|219559656|ref|ZP_03538732.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 316

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/272 (26%), Positives = 125/272 (45%), Gaps = 13/272 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A LR +H   K+ ++  ++    +      L G + V   L    P+  ++  L T+ A 
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98

Query: 79  ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
            RL           +  V      +D++     +HQG+AL+  P      D +      +
Sbjct: 99  ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  
Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    
Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +  + M    ++LN S AA V L        +
Sbjct: 278 VVSIPMAAQAESLNASVAAGVVLAEIARQRRR 309


>gi|239930484|ref|ZP_04687437.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 313

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 13/256 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPV 93
           Q+ R   +  +  + G + V  AL    P+  ++  Q +     +      A       +
Sbjct: 59  QQRRGGGRSSSELVVGRNPVVEALREGVPASTLYVQQFIDNDERVREALQLAAERGGINL 118

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
              P   +D++      HQGL L+  P      + +           L++ LD V DP N
Sbjct: 119 MEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDLVAGAHDEDEDPLIVALDGVTDPRN 177

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA++RS  AF   G++  +R +   +A   K+++G     P  R +NLT AL+     G
Sbjct: 178 LGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAG 237

Query: 207 FQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +GL++D +  + +       + +++G+EGKGL     ET      + MPG  ++LN 
Sbjct: 238 IVVVGLAADGEAEIGELDALEGPVVIVVGSEGKGLSRLVGETCDFRVRIPMPGGAESLNA 297

Query: 266 SNAAAVALYITQNHFA 281
             AA + LY       
Sbjct: 298 GVAAGIVLYEAARRRG 313


>gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON]
 gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis
           50-1 BON]
          Length = 249

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 11/239 (4%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            ++  + G + V  AL +    + I+    ++                 V+ +    +DK
Sbjct: 5   KDSDIIEGRNPVIEALKSGRLIKIIYIAAGSRGKTVDCIKSLAQSRGISVQEIERVQLDK 64

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                A HQG+    AP     ++ +            +++LD + DPHN+GAI+R+A  
Sbjct: 65  RSATGA-HQGVVAYVAPYTYAQIEDILEAAAQKHQDPFVLLLDGITDPHNMGAIIRTAEC 123

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   +A + K+++GA+E+I    ++N+   ++++   G   +G     
Sbjct: 124 MGAHGIIIPKDRSIGITAAVVKASAGAVEYIHIAAVTNMAQTVERLKKDGLWIMGADMRG 183

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + P         I LI+G EG G+R   +E    +  + M G I +LN S AA + +Y 
Sbjct: 184 R-PCRSMDLKGPIGLIIGGEGSGIRRLVKEKCDVLLSIPMSGHIASLNASVAAGMLMYE 241


>gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205]
 gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola
           CNS-205]
          Length = 372

 Score =  229 bits (585), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 116/254 (45%), Gaps = 13/254 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--HPFPVK 94
           +  + ++     L G + V  +L      I  L   +  N+  R+             + 
Sbjct: 118 RRSNPAKDAPELLVGRNPVLESLRANVPAI-ALYVAQGLNSDDRISEIVRTAADRGIAML 176

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148
            V    +D++ G   +HQG+ L+  P      + +      + + LL+ LD V DP N+G
Sbjct: 177 EVSRAELDRMTG-GVLHQGVGLQVPPFRYEPFEDLTAAALEQAAPLLVALDGVTDPRNLG 235

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT AL+     GF 
Sbjct: 236 AVIRSAAAFGAQGVFLPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFV 295

Query: 209 TIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +GL +D +  L     +   + +++G+EG+GL     ET      + M   +++LN S 
Sbjct: 296 VVGLDADGETDLYHLEASVGPLVVVVGSEGRGLSRLVGETCDLTVQIPMVSDVESLNASV 355

Query: 268 AAAVALYITQNHFA 281
           AAAV L       A
Sbjct: 356 AAAVTLAEVARRRA 369


>gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 249

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 11/253 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+ +    K +   +       G H    AL     K  +L+ ++NA   + WD 
Sbjct: 8   NNPQIKQWRKLLAK-KERDKTGMFLAEGYHLAEEALK--GEKAIELIISENAELPVRWDY 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV  V  + I  +   E   QG+        +P   +V+ S  L++ D V DP 
Sbjct: 65  G---ELPVTMVTDEIIKSLSDTE-TPQGVIAVCKEEKTPA--SVKGSTFLLI-DAVQDPG 117

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A A   D +I  K  +   +  + +SA G+  H+P IR  +L + + ++   
Sbjct: 118 NLGTMIRTADAAGIDAVIVGKGSADIYNPKVLRSAQGSHFHLPIIR-GSLNEWMDRLEEE 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                G + ++  P ++     + AL++G EG G+ P+         ++ + G  ++LNV
Sbjct: 177 EIPVYGTALENGSPYKETHPAGRFALLVGNEGSGVSPELLARTDKNLYIPIYGKSESLNV 236

Query: 266 SNAAAVALYITQN 278
           + AA + LY  +N
Sbjct: 237 AVAAGILLYYLKN 249


>gi|332878889|ref|ZP_08446604.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332683240|gb|EGJ56122.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 246

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 11/246 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           Q +   +YG+  V  AL       K+F     +  L R           PV+ VP + ++
Sbjct: 2   QEQEYQIYGIRAVMEALEAGKTLDKVFVQKGLQGNLFRELLSLLQQSQVPVQYVPVEKLN 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K   HQG+    +P+     + +         + L ++LDH++D  N GAI+R+A 
Sbjct: 62  RLTKK--NHQGVVATLSPVDYHNFEDLVISVTESGATPLFLLLDHLSDVRNFGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  KR S S +A   K+++GA+  +P  ++ NL DA+  +   G + +  +  
Sbjct: 120 CAGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + L  E  +   A+++GAE  G+ P   +   S A L M G I +LNVS A AV LY 
Sbjct: 180 TNQLLYAEDFSVPTAIVMGAEDVGISPAVLKVVDSKAKLPMKGEIGSLNVSVACAVFLYE 239

Query: 276 TQNHFA 281
                 
Sbjct: 240 VVRQRG 245


>gi|110835053|ref|YP_693912.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110648164|emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
          Length = 251

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 16/243 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVPPQTIDKIVG 106
           G H V A L +    + +L        R D        A       ++    + ++K  G
Sbjct: 9   GFHAVEALLRHRPEAVLELFVQDTRADRDDPRLAALMQAAKDFGIAIQRARREVLEKHAG 68

Query: 107 KEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +   QG+     P        L   LD      LL+VL++V DPHN+GA LRSA A   
Sbjct: 69  PQN--QGIVARARPRRPLDESALLQWLDGKPAKPLLLVLENVTDPHNLGACLRSADAAGV 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK- 218
             +I  +R +   + V  ++A GA E + Y  I NL   L ++   G   +G + + +  
Sbjct: 127 QAVIVPRRNAAGLTPVACRTAVGAAESLAYYEIGNLASLLDQLRDRGVWVVGTALEERSE 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L      + +A+++GAEG GL+  T++    +  + M G +++LNVS A  V L+  + 
Sbjct: 187 SLFTFQAPESLAVVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVMLFQVRA 246

Query: 279 HFA 281
             +
Sbjct: 247 QRS 249


>gi|84516419|ref|ZP_01003778.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
           vestfoldensis SKA53]
 gi|84509455|gb|EAQ05913.1| RNA methyltransferase, TrmH family, group 3 [Loktanella
           vestfoldensis SKA53]
          Length = 258

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 85/239 (35%), Positives = 139/239 (58%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++  +  E ++L+G+H V  AL NP+R+  +L+ T+NAL RL  DA        +  
Sbjct: 10  KEQAKRVASQETVWLFGLHAVRDALENPAREKLRLIVTRNALERLG-DAVATGGIEPEIS 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE  PL   +L  V          +++LD V DPHN+GAIL
Sbjct: 69  DPRKFAAPLDPQSVHQGAALEVKPLDWGSLQDVALREGPMPPRIVLLDRVTDPHNVGAIL 128

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    ++  +R++  E+  LAK+ASGALE  PY+R+ NL D++ ++   G+  +G
Sbjct: 129 RSAEVFGARAVVAMQRHAAPETGALAKTASGALERQPYLRVRNLADSIVELQQMGYLVLG 188

Query: 212 LSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L  +++  +E+ ++  +   +AL++GAEG GLR KT+ET   +  +       +LNVSN
Sbjct: 189 LDGEAETTIEEAVEGKRDRAVALVMGAEGPGLRDKTRETCDILVRIDASADFGSLNVSN 247


>gi|325662834|ref|ZP_08151403.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470886|gb|EGC74115.1| RNA methyltransferase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 262

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 113/257 (43%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD 84
           ++   K++    +KS+  ++     + GV         P  ++ ++  ++  A  + +  
Sbjct: 6   SNARVKELVQLQKKSKVRNEQGVFLVEGVKMYQEI---PQEQLVKVYVSETFADKQKEEI 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVND 143
             L     ++ +      + V      QG+            D +      L+VLD++ D
Sbjct: 63  NRLKDRRKLEYLSDHVF-QYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A      GII +K      +  + +S  G++  +P++ + +L +A+ K+ 
Sbjct: 122 PGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLKEAIAKVK 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G  T     D K   ++E    K A ++G EG GLR +  + A +   + M G +++L
Sbjct: 182 AHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKEIADLADTWIRIPMQGQVESL 241

Query: 264 NVSNAAAVALYITQNHF 280
           N + A +V ++ T    
Sbjct: 242 NAAIATSVLMFETARQR 258


>gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 310

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 124/267 (46%), Gaps = 20/267 (7%)

Query: 33  MQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           M+  NQ  R    PE         +YG + V+  L + S     L+A   A A   +   
Sbjct: 42  MEEKNQSRRPRRSPEEPLQKNESLVYGKNPVTELLKSGSGVDTVLIAEGMAPAVAAYYTA 101

Query: 87  LPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137
           L       VK V P  +  + G E+ HQG+A   + +   T+D +         +  L++
Sbjct: 102 LAKEAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIKYVTVDDLMAAAKDKGEAPFLVL 160

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            D + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P  R++N+ +
Sbjct: 161 SDGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGE 220

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM- 256
            ++++   G        D    L +      IAL+LG+EG G+    ++    +  L M 
Sbjct: 221 TIRRLKEQGVFVYCADMDG-VSLRRNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRLDMA 279

Query: 257 -PG-IIKALNVSNAAAVALYITQNHFA 281
            PG  + + NVS AA + LY  Q+  A
Sbjct: 280 APGTGVDSYNVSVAAGIILYEIQSQRA 306


>gi|218779780|ref|YP_002431098.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 249

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 12/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103
           +   LYG+H V  AL    R+   +  +++       D           VKT P Q+  K
Sbjct: 2   KTELLYGMHPVREALLAGKRQFQAVYVSESRTGEGKEDILSLARERGIEVKT-PDQSFFK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             G++   QG+A   +      L+ +            +++D +NDP N GA++R+A+  
Sbjct: 61  --GQDRGGQGVAARVSLFKPIALELLVKKAGGEQPLFFLLMDEINDPQNCGALMRTALCA 118

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +G+I   + S   S  ++K+++GALEH+P  R+ NL  ++Q +   G    GL + + 
Sbjct: 119 GVNGVIMPDKRSSPLSPAVSKASAGALEHMPVARVVNLVRSMQYLKDQGVWFFGLDARAS 178

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + +       A+++G EGKGLRP  ++    +  +   G + +LN S A A+++Y   
Sbjct: 179 GTVWEADLTGPAAVVVGNEGKGLRPLVRKECDQLVSIPQAGPLGSLNASVAGALSMYEVM 238

Query: 278 NHF 280
              
Sbjct: 239 RQR 241


>gi|94495845|ref|ZP_01302424.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94424537|gb|EAT09559.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 249

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 90/237 (37%), Positives = 140/237 (59%), Gaps = 11/237 (4%)

Query: 38  QKSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           +K+  +++P+  F   YG H V+AAL NP+R + ++  T+ AL  LD    LP   P+  
Sbjct: 2   KKTHRSAKPKGAFPRFYGRHAVTAALANPNRTVRKIWGTREALGALD----LPPVLPIVY 57

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAI 150
                + ++V  +A HQG+  E  PL    L     +   + + ++VLD V DPHN+GAI
Sbjct: 58  SDVADMGRMVPSDAPHQGIVAEVEPLDDVWLGDVLEEGQDDKRPILVLDQVTDPHNVGAI 117

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA AF    I+T  R++P ES VLA++ASGALE +P++R+ NL  AL ++   G+  I
Sbjct: 118 LRSAAAFDALCIVTQDRHAPPESGVLARAASGALEIVPWVRVVNLARALDEIAEAGYWRI 177

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GL  ++   + + I   ++AL+LGAEG+GLR  +      +A L +   +++LNVSN
Sbjct: 178 GLDGEADTTIGEAIGQSRVALVLGAEGEGLRHNSIAHCDIIAKLPISPRMESLNVSN 234


>gi|31794756|ref|NP_857249.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis
           AF2122/97]
 gi|81421359|sp|Q7TW55|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c
 gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis
           AF2122/97]
          Length = 402

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 15/264 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77
           A LR +H   K+ ++  ++  +   + E +   G + V   L    P+  ++  L T+ A
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97

Query: 78  LARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
             RL           +  V      +D++     +HQG+AL+  P      D +      
Sbjct: 98  DERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALD 156

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP 
Sbjct: 157 QPPALLVALDNLSDPRNLGAIMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++   
Sbjct: 217 ARATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCD 276

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + M    ++LN S AA V L
Sbjct: 277 EVVSIPMAAQAESLNASVAAGVVL 300


>gi|302385702|ref|YP_003821524.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           saccharolyticum WM1]
 gi|302196330|gb|ADL03901.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           saccharolyticum WM1]
          Length = 246

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDK 103
           E   + G + V  A  +  + I +L   K       +            +  V  + +D+
Sbjct: 3   EEFTIEGRNAVLEAFRSG-KTIDKLYVQKGVQDGPIQSIIREAKKKDTILNFVERERLDQ 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  +E  HQG+    A      ++ +            L +LD + DPHN+GAI+R+A  
Sbjct: 62  M-SEEGHHQGVIAHAAAYEYAEVEDLLKAAEEKGEPPFLFLLDGIEDPHNLGAIIRTANL 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  KR +   +A +AK+++GAL + P  +++NLT  ++++   G   +      
Sbjct: 121 AGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEELKKRGMWFVCADMGG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  + +      I L++G+EG G+    +ET   +A + M G I +LN S AA V  Y  
Sbjct: 181 EV-MYRLDLKGPIGLVIGSEGNGVGKLVRETCDMVASIPMKGNIDSLNASVAAGVLAYEI 239

Query: 277 QNHF 280
               
Sbjct: 240 VRQR 243


>gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis
           MA-4680]
          Length = 313

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 115/280 (41%), Gaps = 20/280 (7%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPEN-------LFLYGVHTVSAALNNPS----RKIF 69
           A++R+ H+  +   +  ++ +    P           + G + V  AL          + 
Sbjct: 35  AEMRKGHKKNRIATAKTKQVQRRPAPRGRGGKSASEMVVGRNPVVEALREGVPATMLYVQ 94

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           Q +     +      A       +   P   +D++      HQGL L+  P      + +
Sbjct: 95  QFIDNDERVREALQLAGERGGIHLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPEDL 153

Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 154 SAAAYDVGEDPLVVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 213

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLR 241
                P  R +NLT  L+     G   +GL++D +  L + E     + +++G+EGKGL 
Sbjct: 214 TAARTPVARATNLTRTLESYKKEGLVVVGLTADGEVELGDLEALAGPVVIVVGSEGKGLS 273

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA V LY       
Sbjct: 274 RLVGETCDFRVRIPMPGGAESLNAGVAAGVVLYEAARRRG 313


>gi|160902072|ref|YP_001567653.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160359716|gb|ABX31330.1| RNA methyltransferase, TrmH family, group 3 [Petrotoga mobilis
           SJ95]
          Length = 240

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 10/239 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +++YG + +   +      +  +      T+    +   +      +     P + ++K+
Sbjct: 1   MYIYGKNILKEIIEARY-PVKHIFFSSSKTERGSLKEIVEDVANLGYSYSFSPNEVLEKM 59

Query: 105 VGKEAVHQGLALETA-PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                 HQG+ ++         LD +   +   L++LD + DPHN GAI+R++VA   D 
Sbjct: 60  ALTNK-HQGIVIDIGNDFKYENLDIIEGKEKLFLVILDQIQDPHNFGAIVRTSVAAGVDA 118

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K  +   + V+ K +SG +  IP I+++NL++ ++ +        G   + K P  
Sbjct: 119 IIIPKDNAVEVTPVVIKVSSGQIFKIPIIKVTNLSNTIETLKKENVWVYGADVEGK-PYY 177

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +     KI L+ G EG G+R   +     +  + M   +++LNVS ++ + L+  +   
Sbjct: 178 EIDWQGKICLVFGNEGNGIRKNVKNHCDELVSIPMFNNVESLNVSVSSGIILFEAKKQR 236


>gi|313887556|ref|ZP_07821239.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846434|gb|EFR33812.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 235

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 12/237 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107
           ++YG   V  A+ N   ++ ++   KNA   +     +     V TV    + ++++ G 
Sbjct: 3   YIYGRGPVMEAIKN--EEVEKVYVGKNASGSIKKILGMARDAKVPTVTSDNEKLEELAGT 60

Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              HQ +    +      L+ +      +    + +LD + DPHN GAI RS   F  D 
Sbjct: 61  -KNHQAVVALVSDFEYIELEDLIRKLEDKEDARIFILDKIEDPHNFGAIARSCNFFGIDA 119

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II   R + + +  + KS++GA+  I   ++SN++ ++ K+   GF       + +  + 
Sbjct: 120 IIFPNRRAATVNDTVVKSSAGAIYDIDVCKVSNISQSIDKLKEAGFWIYATDLEGE-DIR 178

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   + K A+++G EGKG+     + +     +       +LN S AAA+ +Y  + 
Sbjct: 179 ECDFSGKAAVVIGNEGKGVSKNILKNSDKTITIPNFSDFDSLNASVAAAIVMYEIRR 235


>gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
          Length = 380

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 126/264 (47%), Gaps = 15/264 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77
           A LR +H   K+ ++  ++  +   + E +   G + V   L    P+  ++  L T+ A
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97

Query: 78  LARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
             RL           +  V      +D++     +HQG+AL+  P      D +      
Sbjct: 98  DERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALD 156

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP 
Sbjct: 157 QPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++   
Sbjct: 217 ARATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCD 276

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  + M    ++LN S AA V L
Sbjct: 277 EVVSIPMAAQAESLNASVAAGVVL 300


>gi|269926933|ref|YP_003323556.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790593|gb|ACZ42734.1| RNA methyltransferase, TrmH family, group 3 [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 264

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 13/240 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLA--TKNALARLDWDANLPH--PFPVKTVPPQTID 102
             +++YG + V   L    RK+++LL   + +A   L+   +L       ++ V    +D
Sbjct: 19  GRVYIYGRNAVRECLLAGRRKVYRLLVAYSHSASQTLEAIESLAARSGLQIERVERSILD 78

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           ++    A HQG+ +E +     +++       +R    +++LD + DP N G +LR+A  
Sbjct: 79  RLT-HGANHQGVVIEASEFSYSSIEDLLASGELRGKD-ILMLDSLQDPQNFGTLLRTAEV 136

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD- 215
           F    +I  +  S   +  +  ++SGA EH+   +++NL     K+  +G+  +GL  D 
Sbjct: 137 FGIGAVIIPEHRSVEVTPAVVNASSGATEHLNISKVTNLARTASKLKEYGYWVLGLEYDE 196

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S   +        I L++G+EG G+R   ++    +  +   G I +LN + A ++ALY 
Sbjct: 197 SSSVIWDVDLRIPICLVVGSEGSGIRELVRKRCDLLVKIPQAGRIGSLNAAVAGSIALYE 256


>gi|46199993|ref|YP_005660.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|55980265|ref|YP_143562.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|46197620|gb|AAS82033.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|55771678|dbj|BAD70119.1| RNA methyltransferase, TrmH family [Thermus thermophilus HB8]
          Length = 238

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 11/236 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +++YG + V  AL     +  ++L  +     L  +       P   VP   +D ++ + 
Sbjct: 1   MWIYGRNPVLEALRAGRAR--RVLVARGVEGWLLKELERL-GAPYTLVPRIELDTLL-RT 56

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+A E       +L+         +   LL+ LD V DP N GA++RSA+A    G
Sbjct: 57  THHQGIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDPRNYGAMIRSALALGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +++ +R +   S +  K+++GA   +P +++ NL   L+ +   G    GL    +K   
Sbjct: 117 VVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVYGLDVRGEKAPW 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +      + L++G+EG+G+R   +ET   +  + +    ++LN S A  +ALY  +
Sbjct: 177 ELDYARPLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIALYQAR 232


>gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 230

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG + +  A+ N  R I++L   + +      +    +    +      ++ +    
Sbjct: 1   MIIYGKNVIKEAVLN-KRPIYKLYLDEKSSDSKFINFLENNNISYELTNKGQLNNLTD-N 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           AVH G+  +        LD V +    Q  ++LD V DPHN+GAILRS  A + DG+I +
Sbjct: 59  AVHNGVVADVKDYQYLELDVVLDKTRRQRFLMLDEVQDPHNLGAILRSVEATNYDGVIIS 118

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K++    + V+AK++SGA+EH+  I +SNL   + K+    F  +G + ++    ++  K
Sbjct: 119 KKHQVPLTGVVAKTSSGAIEHVKLILVSNLYQTILKLQKEDFLVVGTAGEATASYKEIPK 178

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           N  + +I+G EG GLRP  ++    +  + M G + +LNVS A A+ LY T
Sbjct: 179 NQNLLIIMGNEGFGLRPLIKKGCDLLVSIPMLGKVNSLNVSVATALLLYET 229


>gi|333030107|ref|ZP_08458168.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
           DSM 18011]
 gi|332740704|gb|EGJ71186.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides coprosuis
           DSM 18011]
          Length = 249

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDK 103
           ++  ++GV  V  A+      I ++L  K+  + L  +   A      PV+ VP + +++
Sbjct: 4   KSEIIFGVRAVIEAVEAGKE-IDKILVKKDIQSDLSKELFTALRGKMVPVQRVPVERLNR 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG+    + +    ++ +         +   ++LD V D  N GAI R+   
Sbjct: 63  VTRK--NHQGVIAYVSAVTYQKVEDLVPFLYEQGKNPFFVMLDGVTDVRNFGAIARTCEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++   + S S +A   K+++GAL  +P  R  +L   ++ +   GF+ +  +   
Sbjct: 121 GGVDAVVIPMKGSVSVNADAVKTSAGALHTLPVCREQSLNTTIKYLKDSGFRILAATEKG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                Q      I LI+G+E KG+  +          + + G I++LNVS AA V +Y  
Sbjct: 181 DYNYTQGDYTGPICLIMGSEDKGISAENLSLCDEWMTIPILGNIQSLNVSVAAGVLIYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 VKQR 244


>gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 306

 Score =  228 bits (583), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 21/286 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    ++ AK  R  R  ++     +K     +  +  + G ++V  AL   
Sbjct: 26  TPKAEDRVYH--KAYKAKQERLKRAAQQQARKKKK-----EHGSNMVAGRNSVLEALREG 78

Query: 65  SRKIFQLLATKNALA----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 L   +   A    R   +A      P+       +D+I    A+HQG+AL+  P
Sbjct: 79  I-PATTLYVARRIDADERVRDIIEAASDRGIPMLEAGKPDLDRITD-GAIHQGVALQVPP 136

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 D +           LL+ LD + DP N+GAI+RS  AF   G+I T+R + S +
Sbjct: 137 YEYAHPDDLLSLARDRAEHPLLVALDGITDPRNLGAIVRSTAAFGGHGVIITERRAASMT 196

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALI 232
           A   K+++GA   IP  ++ NL  A+  +   G   +GL  +    L + E+  + + L+
Sbjct: 197 AAAWKTSAGAASRIPVAQVVNLARAIDDLKKSGVFVLGLDMNGDVELPKLELAREPVCLV 256

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +G+EGKGL    ++    +  + +    ++LN   AA VALY    
Sbjct: 257 VGSEGKGLSRLVRDKCDQIVSIPISASTESLNAGVAAGVALYEVAR 302


>gi|325288493|ref|YP_004264674.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963894|gb|ADY54673.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 257

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDK 103
            ++  ++G + V   L +       L+ ++N   R     +L      P + V    +DK
Sbjct: 3   KKDSLVFGRNAVIELLKSGHPVNKVLINSENRSNRNADILSLMKERGVPYQFVERAVLDK 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVA 156
             G +  HQ +   TA       + + N          ++VLD + DPHN+GA+LR+A A
Sbjct: 63  FSGGDK-HQNIVAFTAAREYVETEDILNIARQKGEDPFILVLDELEDPHNLGALLRTADA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII   R S   +  +AK+++GA+E++P  R+ NL  AL+++   G    G  +  
Sbjct: 122 AGVHGIIIPTRRSVGLTPAVAKTSAGAIEYVPVARVGNLVQALKQLKKAGCWVTGAEAGG 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  +     +    L++G E KGL    +ET   +  L M G + +LN S A ++ +Y  
Sbjct: 182 R-DVFSADLSGPRVLVVGGEDKGLGRLIKETCDEIVSLPMLGKMSSLNASAAGSILMYEV 240

Query: 277 QNHF 280
           +   
Sbjct: 241 RRQR 244


>gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
           19977]
 gi|254806513|sp|B1MGY6|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572
 gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 315

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 75/276 (27%), Positives = 125/276 (45%), Gaps = 18/276 (6%)

Query: 21  AKLRRNHRDYKKMQ-----SFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73
           A+ R  H   K+       +  ++ R     E   + G + V   L    P+  ++  + 
Sbjct: 41  AEQRTKHPAAKRAAVQRKIADAKQRRLKQGDEAEMVLGRNPVLECLRTGVPATALYVAVG 100

Query: 74  TKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129
             N   RL     L       +  VP   +D++     +HQGLAL+  P      D +  
Sbjct: 101 ADN-DERLTESVALAADAGIAILEVPRPDLDRM-STNGLHQGLALQIPPYKYAHPDDLLA 158

Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA 
Sbjct: 159 RARAEAQPALLVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAA 218

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P  R +NLT  L+     G   +GL +     L+       IA+++G+EGKGL    
Sbjct: 219 ARLPVARATNLTRTLKDWQDKGITIVGLDAGGDTELDNLDGVGDIAVVVGSEGKGLSQLV 278

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++T  ++  + M G +++LN S AA V L       
Sbjct: 279 RKTCDAVVSIPMAGPVESLNASVAAGVVLAEIARQR 314


>gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 322

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 24/287 (8%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKS---------RHTSQPENLFLYGVHTVSAALNN--PSR 66
           +  A+ R  H  +++ ++ ++K+                  ++ G + V   L    P+ 
Sbjct: 38  TPKAEDRTYHPAHRRAKAASRKAEGAQQRRRQAQKQADGPEYVVGRNPVLECLRAGVPAT 97

Query: 67  KIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            ++  + + +A  RL    +L       +  VP   +D++V    +HQG+ L+  P    
Sbjct: 98  ALYVAIGS-DADERLTEAVHLAAGKGISILEVPRTDLDRMVS-NGMHQGVGLQVPPYQYT 155

Query: 125 TLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +           LL+ LD++ D  N+GA++RS  AF   G++  +R S S +AV  
Sbjct: 156 DPADLLDMAMGSSEPALLVALDNITDTRNLGAVIRSVAAFGGHGVLIPERRSASITAVAW 215

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++++GA   +P  R +NL   L      G Q +GL ++    L+         +++G+EG
Sbjct: 216 RTSAGAAARLPVARATNLNRTLLDWAKAGVQLVGLDAEGDVSLDDYDGTGPTVIVVGSEG 275

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
           KGL    +E   S+  + +   +++LN S AA V L  +  Q    +
Sbjct: 276 KGLSRLVRENCDSILSIPIASEVESLNASVAAGVVLSEFARQRRVKR 322


>gi|221194755|ref|ZP_03567812.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
           49626]
 gi|221185659|gb|EEE18049.1| RNA methyltransferase, TrmH family, group 3 [Atopobium rimae ATCC
           49626]
          Length = 323

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 20/296 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRD--YKKM-------QSFNQKSRHTSQPENL-FLYGV 54
             ++  K     DS  A   ++HR   Y+             +KSR + Q      + G 
Sbjct: 24  QGQQPHKRKKRADSREACGTKDHRSGGYRPRDIRTSDDTRGARKSRTSRQKSAFDLIEGR 83

Query: 55  HTVSAAL--NNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAV 110
             V+ AL  N P +     +++      ++  A        PV+ VP Q +D +      
Sbjct: 84  RAVAEALALNIPLKNALVQVSSGERDQEIETLAKQLSSDGVPVERVPRQVLDALSS-HGA 142

Query: 111 HQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           HQG+ + T P     L  +         L++VLDHV D  N GAI+RSA      G++  
Sbjct: 143 HQGVIVRTRPFEYAELSDILEKAGSKDALVVVLDHVTDEGNFGAIVRSAEVVGAAGVVIA 202

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
              +        K+++GA+ H+P  R+SN++ AL+++ + GF T G +  +   +     
Sbjct: 203 NARAAQVGVGAYKTSAGAVLHVPIARVSNVSRALEELKAAGFWTCGATEHAADDVWSAPL 262

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             ++AL++G+EG G+     ET      L   G I++LNV+ A  V  Y      +
Sbjct: 263 GGRLALVMGSEGAGISRLVLETCDFACKLPQRGKIESLNVAQATTVMCYEWLRRVS 318


>gi|295102322|emb|CBK99867.1| rRNA methylase, putative, group 3 [Faecalibacterium prausnitzii
           L2-6]
          Length = 268

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 15/264 (5%)

Query: 31  KKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + M    ++ +   QP N   +YG + V+  L + S     LLA   A A   +   +  
Sbjct: 4   RNMPRRPRREKADDQPRNESLVYGKNPVTELLKSGSGVDTVLLAEGMAPAVAAYYTAMAK 63

Query: 90  --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140
                VK V P  +  + G E+ HQG+A   + +   T++ +            L++ D 
Sbjct: 64  EAGATVKRVHPNKLRLMTGTES-HQGVAAFASEIEYATVEDLLAAAKEKGEPPFLVLSDG 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DPHN+GA++RSA+     GI+  KR   S +  + KS++GA E +P  R++N+ + ++
Sbjct: 123 IEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGETIR 182

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-- 258
           ++   G        D    L +      IAL+LG+EG G+    ++    +  L M    
Sbjct: 183 RLKEQGVFVYCADMDG-VSLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVSLDMTAQG 241

Query: 259 -IIKALNVSNAAAVALYITQNHFA 281
             + + NVS AA + LY  Q+  A
Sbjct: 242 TGVDSFNVSVAAGIILYEIQSQRA 265


>gi|315925068|ref|ZP_07921285.1| protein-export membrane protein SecF [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621967|gb|EFV01931.1| protein-export membrane protein SecF [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 265

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 15/262 (5%)

Query: 31  KKMQSFNQKSRHTSQP--ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDA 85
           K+  +   K R       +   + G + V  AL    R+I +L   K+    +     D 
Sbjct: 2   KQKHNAGAKPREGRGENADAFVIVGKNPVREALRTG-RQIDKLYVMKDNRDHVLGDLIDQ 60

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVL 138
                  V +V    +  +      HQG+A  TAP    +L       +A      ++V+
Sbjct: 61  AKKRRIIVHSVDKAKLAALAD-GGHHQGIAAVTAPFAYQSLSAVLAKAEAAGEDAFVVVM 119

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           DHV DPHN GAI+RSA      G+I   R S S +AV  K+++GA+     +++ NL   
Sbjct: 120 DHVLDPHNFGAIVRSANLCGAHGVIFPDRRSASVTAVSMKASAGAMNATSMVKVGNLARC 179

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+ + + GF        +  P        K+AL++G+EGKG+ P  ++     A +   G
Sbjct: 180 LETLKAQGFWVAAADM-AGAPYYTRDFTGKLALVIGSEGKGISPNVKKHCDFTASIPNYG 238

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            I + N S AA + +       
Sbjct: 239 SIDSFNASVAAGILMAEAARQR 260


>gi|169797417|ref|YP_001715210.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213155769|ref|YP_002317814.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB0057]
 gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB056]
 gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB058]
 gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB059]
 gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii AB0057]
          Length = 249

 Score =  228 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGL- 66

Query: 109 AVHQGLALETAP---LLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P   L    LD +       LL+ LD V DPHN+GA +R+A A     +
Sbjct: 67  PFHQGVVAAVRPHPTLNEKDLDQLLTETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK-PL 220
           I  +  S S +    K A+G  E + +I+++NL   L  +      + IG   D    P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ      A++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|206890574|ref|YP_002249766.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742512|gb|ACI21569.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 248

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 12/247 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQT 100
            S+ + +++YGV+ V  +    S  + ++  +KN +++L     L       VK V    
Sbjct: 2   ESKDKLMYIYGVNPVLESFK-ISDALKEIYISKNRISKLKEILRLAEEKSISVKIVEETF 60

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           I+KI   + VHQG+  +  P  + TLD               ++LD V DP N G+I R 
Sbjct: 61  IEKIT--QGVHQGVVAKIKPKKTITLDEALKISFKKNEPAFFLILDLVEDPQNFGSICRI 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     II  K+ S      + K+++GA+ H+  + I+N+  A++ +        G  
Sbjct: 119 ADAAGVHAIIYQKKRSVGIVPSVWKASAGAVWHVNLVEINNIKYAIKTLKEHNITIYGAE 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + +K    +      + LI+G+EGKG+R         +  + M G I +LNVS A+A+  
Sbjct: 179 AQAKDVFWESDFTQPLGLIVGSEGKGIRQTVIALCDKVIKIPMRGTINSLNVSVASALIT 238

Query: 274 YITQNHF 280
           +      
Sbjct: 239 FEVLRQR 245


>gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter
           sp. 1501(2011)]
          Length = 262

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 27/254 (10%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--------------PFPVKTVP 97
           YG+H + A L +       L   +    +   +A                     ++   
Sbjct: 8   YGIHAIHALLTHRPTDAMALFVQQGRSGKEGNNAAEEADSTFEEILQLAEQMGVSIQQAS 67

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIGAILR 152
              +  + G    HQG+ L   PL       +         L +VLD + D HN+GA LR
Sbjct: 68  RDKLTALCGS-PQHQGVVLNARPLAMADEGEIATLAKAEDALFLVLDQITDAHNLGACLR 126

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A   D +I  K +S S +  +AK + GA+E +P I ++NL   ++ +   G    G 
Sbjct: 127 TAAAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQSGVFVYGT 186

Query: 213 SSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KALNVSN 267
           + D + K L       K+A+I+G+EG+G+R  T E    + ++ M G      ++LNVS 
Sbjct: 187 ALDETAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGNKHGSLQSLNVSV 246

Query: 268 AAAVALYI--TQNH 279
           A  + LY    Q H
Sbjct: 247 ATGMVLYEVSRQRH 260


>gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           owensensis OL]
 gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
           owensensis OL]
          Length = 253

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 12/242 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  AL + +  I ++  + +A  +      D        VK V    IDK+  +
Sbjct: 4   IEGKNPVKEALKSGA-MITEVYISNSAKDKETAQIIDLCRQRGVVVKFVDRNKIDKMA-Q 61

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+            D +         +  L++LD + DP N G+I+RSA      
Sbjct: 62  TKNPQGVIAIAREFEYCDTDDILLEARKKGEAAFLVLLDGITDPQNFGSIIRSAHLCGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+   R S   +  + K+++GA+E++   R+ NL   ++++   G       + S KP+
Sbjct: 122 GIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFAADASSPKPV 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +        +++G+EGKG+    +E A  +  +   G I + N S AA +  +      
Sbjct: 182 YECDFTIPACIVIGSEGKGISRLVKEGADFLIKIPQKGYINSFNASVAAGIIFFEVLKQR 241

Query: 281 AK 282
            K
Sbjct: 242 LK 243


>gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 316

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 12/273 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
             +D  Y K     +  ++           ++  +  + G ++V  AL N    +  +  
Sbjct: 39  RAEDRTYHKAHSAAKASERRSGGRPTGGRKAKASSEVVAGRNSVLEALRNDV-PVTTMYI 97

Query: 74  ----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                 +   R           P+   P   +D+I    AVHQGLAL+  P      + +
Sbjct: 98  AGRIDSDDRVREALKIATERSLPILETPRGELDRITD-GAVHQGLALQVPPYEYAHPNDL 156

Query: 130 RNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            +       L++ LD + DP N+GAI+RS  AF   G++   R S   +A   K+++GA 
Sbjct: 157 IDPELPGIPLIVALDGITDPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSAGAA 216

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243
             IP  + +NLT  L+     GF  IGL  +    L + E+ N+ I +++G+EGKGL   
Sbjct: 217 ARIPVAQCTNLTRTLEDYRKAGFFVIGLDMEGDVELPDLELANEPIVIVVGSEGKGLSRL 276

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +ET   +  + M   +++LN   A  V LY  
Sbjct: 277 VRETCDQIVSVPMSSAVESLNAGIATGVTLYEV 309


>gi|325263766|ref|ZP_08130499.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
 gi|324030804|gb|EGB92086.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. D5]
          Length = 260

 Score =  228 bits (582), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 11/255 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           N +S +      L + G + V  A  +  P  K+F L   ++   R        H   + 
Sbjct: 8   NNRSENGQIENTLIIEGRNAVLEAFRSGKPIDKVFILDGCQDGPIRTIVREAKKHDTILN 67

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNI 147
            V  + + ++  +   HQG+    A         +    +        ++LD++ DPHN+
Sbjct: 68  FVEKERLAQL-SETGKHQGVIAYAAAYEYAEIEDMFKLAEEKGEDPFFILLDNIEDPHNL 126

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+R+A      G+I  KR +   +A +AK+++GAL + P  +++NL   ++++   G 
Sbjct: 127 GAIIRTANLAGAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLAKTMEELKERGL 186

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +      +  + +      I L++G EG+G+    +E    +A + M G I +LN S 
Sbjct: 187 WFVCADMGGE-SMYKMNLTGPIGLVVGNEGEGVGRLVKEKCDFVAAIPMKGEIDSLNASV 245

Query: 268 AAAVALYITQNHFAK 282
           AA V  Y       +
Sbjct: 246 AAGVLAYEIVRQRLQ 260


>gi|15610715|ref|NP_218096.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|148663443|ref|YP_001284966.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|215405628|ref|ZP_03417809.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215413500|ref|ZP_03422177.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|218755363|ref|ZP_03534159.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
 gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260198621|ref|ZP_05766112.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289555843|ref|ZP_06445053.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN R506]
 gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           KZN V2475]
 gi|81345964|sp|P96861|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           Rv3579c/MT3685
 gi|254765083|sp|A5U8Q4|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618
 gi|1877310|emb|CAB07153.1| POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis
           H37Rv]
 gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
 gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium
           tuberculosis F11]
 gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289440475|gb|EFD22968.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 322

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A LR +H   K+ ++  ++    +      L G + V   L    P+  ++  L T+ A 
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98

Query: 79  ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
            RL           +  V      +D++     +HQG+AL+  P      D +      +
Sbjct: 99  ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  
Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    
Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
           +  + M    ++LN S AA V L
Sbjct: 278 VVSIPMAAQAESLNASVAAGVVL 300


>gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
           Mississippi]
          Length = 244

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 13/237 (5%)

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAV-HQG 113
             AAL NP+R    +L T   L +    A +     V    V  + I KI+G   + HQG
Sbjct: 2   CIAALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGHGGMAHQG 61

Query: 114 LALETAPLLSPTLDAVR----------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +AL    L       +R           +  +++LD V D +N+GAI+RSA  F  D +I
Sbjct: 62  IALMVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAACFDADAVI 121

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             + +SPSES  + K++SGA + +P +++ NL   ++ +   G+   G+ +   K L + 
Sbjct: 122 LPEHHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGGDKALHEI 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ A+ILG+EGKG+R  T+E    +  + M   I +LNVSNAAA+ALY +    
Sbjct: 182 SFCERRAIILGSEGKGIRRLTREHCDHLVKIPMSARIDSLNVSNAAAIALYSSYLQL 238


>gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
           4810]
 gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
           4810]
          Length = 320

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 76/275 (27%), Positives = 119/275 (43%), Gaps = 18/275 (6%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQ------PENLFLYGVHTVSAALNNP-SRKIFQ 70
           +  A+ R  H+ YK   S     R          P +  + G + V  AL          
Sbjct: 36  TPKAEDRPAHKAYKGGASGGGPRRGGGGKGARKAPGSDQVAGRNAVLEALREDVPATQLT 95

Query: 71  LLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           ++   +A  R+     L      PV       +D++    +VHQG+AL   P     +  
Sbjct: 96  VMVRLDADERVREIMRLATARGLPVAEASRTDLDRMTD-HSVHQGVALTIPPYEYADVQD 154

Query: 129 VR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +           LL+ LD + DP N+GAILRSA AF   G+I  +R S S +A + K A+
Sbjct: 155 LLRIAEERFEPPLLVALDGITDPRNLGAILRSADAFGAHGVILPERRSVSMTASVWKVAA 214

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGL 240
           GA   +   +++NL   L  +       +GL ++        E+      L++GAEGKGL
Sbjct: 215 GAAGRVRVAQVTNLNRTLTALKEQDVFALGLDAEGDVTTRGLELGTQPAVLVVGAEGKGL 274

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               ++    +  + M G  ++LN S AAA+ALY 
Sbjct: 275 SRLARDICDQVVSIPMGGRAESLNASVAAAIALYE 309


>gi|307294636|ref|ZP_07574478.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
           chlorophenolicum L-1]
 gi|306879110|gb|EFN10328.1| RNA methyltransferase, TrmH family, group 3 [Sphingobium
           chlorophenolicum L-1]
          Length = 246

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 90/221 (40%), Positives = 132/221 (59%), Gaps = 9/221 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG H V AAL NP R + ++  T++AL  LD    LP   P+       + ++V  +A H
Sbjct: 18  YGRHAVIAALANPDRVVRKIWGTRDALNALD----LPPVLPIVYSDVADLGRMVPSDAPH 73

Query: 112 QGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           QG+  E  PL    L  V      + + ++VLD V DPHN+GAILRSA AF    I+T  
Sbjct: 74  QGIVAEVEPLDDVWLGNVLEAGQDDKRPVLVLDQVTDPHNVGAILRSAAAFDALCIVTQD 133

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R++P ES VLA+SASGALE +P++R+ NL  AL ++   G+  IGL  ++++ L + I  
Sbjct: 134 RHAPPESGVLARSASGALEIVPWVRVVNLARALDEIAEAGYWRIGLDGEAEQTLGEAIGT 193

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++AL+LGAEG+GLR  +      +A L +   +++LNVSN
Sbjct: 194 SRVALVLGAEGEGLRHNSMAHCDILAKLPISPRMESLNVSN 234


>gi|59712920|ref|YP_205696.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio fischeri
           ES114]
 gi|59481021|gb|AAW86808.1| 23S rRNA (Gm2251)-methyltransferase [Vibrio fischeri ES114]
          Length = 248

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 11/244 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKI 104
           N +++G+H   A L     +  ++   K     RL    N      F ++ +P +T+D  
Sbjct: 3   NDYIFGIHAAKAVLERDPARFIEVFVLKGRQDDRLLPILNELTQLGFKIQELPRKTLDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               A HQG+     P   L    LD +     + LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-NGANHQGIIARVTPAKQLNEHDLDDIVSQTENPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S S +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSASMTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + Q      +A+++GAE +     K  +T   +  + M G + +L VS A+ + L+   
Sbjct: 182 DVFQSKLTGPLAIVMGAERRWHASLKHVKTCDDLIKIPMAGSVSSLKVSVASGICLFEAV 241

Query: 278 NHFA 281
              A
Sbjct: 242 RQRA 245


>gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B]
 gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus
           cellulolyticus 11B]
          Length = 250

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 118/249 (47%), Gaps = 14/249 (5%)

Query: 45  QPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           + E+  + G +    AL +     R +       +   +   +        ++ V  + +
Sbjct: 3   RSEDTLIGGRNPAVEALRSGVPVRRVLLADGIDSDRRVQEIRERCEHDGIEIRVVARREL 62

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           D++ G    HQG+ +   P        +      R   LL+ +D V DP N+GAI+RSA 
Sbjct: 63  DRLTGTG--HQGVVVVVPPFTYADEREIVDRAFERAPHLLLAVDGVTDPRNLGAIVRSAA 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF   G++  KR +   +  + K+++GAL  +P  R++N+   L  +       +GLS+D
Sbjct: 121 AFGASGVLLPKRRAAGVTPAVWKASAGALARMPLARVTNMARVLVALAERNVTVVGLSAD 180

Query: 216 SKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
               ++Q   +     +AL++GAEG+GL    +E  T +A + M G +++LNVS A  +A
Sbjct: 181 GDTTIQQAADDAGGGPVALVVGAEGRGLSRLVREKCTVVASIPMTGTVESLNVSVATGIA 240

Query: 273 LYITQNHFA 281
           L++     +
Sbjct: 241 LFVLSQRLS 249


>gi|85373568|ref|YP_457630.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786651|gb|ABC62833.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 262

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 96/237 (40%), Positives = 144/237 (60%), Gaps = 5/237 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           +MQ      R T  P ++ L+G H V AAL NP+R   +L AT+  +A LD +  LP  F
Sbjct: 16  RMQGGRGSGRAT--PGHVRLWGRHAVEAALLNPARVHRKLWATREGVASLDGE--LPPDF 71

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAI 150
           PV+      + ++V ++A HQGL LE   L    +D  +   + +++LD V DPHN+GAI
Sbjct: 72  PVEYADVTDLARLVARDAPHQGLVLECEQLKDVYIDDVLEEGRPVVILDQVTDPHNVGAI 131

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA AF    I+T  R++P ES V+AKSASGALE +P++R+ NL  AL  +   G+  I
Sbjct: 132 LRSAAAFDAAAIVTQDRHAPPESGVVAKSASGALETVPWVRVVNLARALDTLAERGYWRI 191

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           GL+ +++  L + +    +AL+LGAEG+G+R   +    ++A L +   I++LNVSN
Sbjct: 192 GLTGNTEATLAEALPAGPVALVLGAEGEGMRHNIEAHCDALARLPISNAIESLNVSN 248


>gi|229083411|ref|ZP_04215759.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
 gi|228699844|gb|EEL52481.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-44]
          Length = 232

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 12/224 (5%)

Query: 65  SRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            R I ++   + A     ++       +   ++  P + +D++V  E  HQG+  + A  
Sbjct: 4   GRDINKIWIAEGAAKGQVQIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAY 61

Query: 122 LSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
               L+ +             ++LD + DPHN+G+I+R+A A    GII  KR +   +A
Sbjct: 62  QYAELEDLFEAAAKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTA 121

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            +AK+++GA+E+IP  R++NL+  +  +   G    G  +  K        N  I L++G
Sbjct: 122 AVAKASTGAIEYIPVARVTNLSRTIDDLKERGLWIAGTDARGKTDYRNLDGNMPIGLVIG 181

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +EGKG+     E    + +L M G + +LN S AA++ +Y    
Sbjct: 182 SEGKGMSRIIGEKCDFLINLPMVGKVTSLNASVAASLLMYEVYR 225


>gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           210]
          Length = 324

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A LR +H   K+ ++  ++    +      L G + V   L    P+  ++  L T+ A 
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98

Query: 79  ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
            RL           +  V      +D++     +HQG+AL+  P      D +      +
Sbjct: 99  ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  
Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    
Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
           +  + M    ++LN S AA V L
Sbjct: 278 VVSIPMAAQAESLNASVAAGVVL 300


>gi|266623924|ref|ZP_06116859.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
           DSM 13479]
 gi|288864256|gb|EFC96554.1| RNA methyltransferase, TrmH family, group 3 [Clostridium hathewayi
           DSM 13479]
          Length = 250

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTID 102
            E   + G + V  A     + I +L      K+   +            V  V  + ++
Sbjct: 7   TEEFIIEGRNAVLEAFR-AGKTIDKLYVQEGIKDGPVQSIIREAKKQDTIVNFVSRERLN 65

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  +E  HQG+    A      ++ +            + +LD + DPHN+GAI+R+A 
Sbjct: 66  QM-SQEGRHQGVIAHAAAYEYAEVEDILKAAEEKGEPPFIFLLDGIEDPHNLGAIIRTAN 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  KR +   +AV+AK+++GAL + P  +++NL   ++++   G   +    +
Sbjct: 125 LAGAHGVIIPKRRASGLTAVVAKTSAGALNYTPVAKVTNLAATIEELKEKGLWFVCADMN 184

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  + +      I L++G+EG G+    +E    +A + M G I +LN S AA V  Y 
Sbjct: 185 GE-LMYRLNLKGPIGLVIGSEGDGVGRLVREKCDMVASIPMKGDIDSLNASVAAGVLAYE 243

Query: 276 TQNHF 280
                
Sbjct: 244 IVRQR 248


>gi|225631081|ref|ZP_03787814.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225591226|gb|EEH12375.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 257

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 136/246 (55%), Gaps = 12/246 (4%)

Query: 41  RHTSQPENLFLYGV---HTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVK 94
           + +   EN +LY     HT  +AL N +R+  +LLAT+N       +           V+
Sbjct: 2   KSSKTNENFWLYXXXXXHTCMSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVR 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGA 149
            V  + ++ +V K A HQG+AL  AP+L         ++  +S  +++LD V D HNIG+
Sbjct: 62  LVENKILNDVVPKGANHQGIALNVAPILYNLSVEEIAESSNDSSTIVILDQVTDTHNIGS 121

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR++  F+ + ++    +SPSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+  
Sbjct: 122 ILRTSACFNVNALVLPHNHSPSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWC 181

Query: 210 IGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            G   ++K+ +++      K  +I G+E KG+R   +E    +  + +  +I +LNVSNA
Sbjct: 182 YGFDCNAKENIDEIKSLEKKRVIIFGSEEKGMRRLVKENCDYLLKIPISNVIDSLNVSNA 241

Query: 269 AAVALY 274
           AA+ LY
Sbjct: 242 AAIGLY 247


>gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
 gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
          Length = 257

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 107/256 (41%), Gaps = 6/256 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +    +KS+  ++ +   + G+         P  ++ ++  +++   +   + 
Sbjct: 6   SNPQVKNLLQLQKKSKVRNEEQVFIVEGLRMFMEV---PQDQVKKVYVSESLYNKKKEEL 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDP 144
           +L   FPV+ +  +   + V      QG+            D + + +   +VLD++ DP
Sbjct: 63  HLER-FPVEVLADKVF-QHVSDTKTPQGILCVVKQRKYEIEDLISKENPHFIVLDNLQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R+A       +  +       +    +S  G++  +P++ + +L   L K   
Sbjct: 121 GNLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIYRVPFVYVDDLLALLDKFQK 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               T       K   ++E      A+++G EG GLR +  E A     + M G +++LN
Sbjct: 181 KKVTTYAAHLKGKNTYDKENYQSGTAILIGNEGNGLRDEVAEKADVWVQIPMQGKVESLN 240

Query: 265 VSNAAAVALYITQNHF 280
            + AA++ ++      
Sbjct: 241 AAIAASILMFEVYRQR 256


>gi|328954219|ref|YP_004371553.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454543|gb|AEB10372.1| RNA methyltransferase, TrmH family, group 3 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 257

 Score =  227 bits (581), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 12/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YGVH V  AL      + +++  K   A            +    +      I ++VG
Sbjct: 9   LIYGVHPVLEALRREGNAVEEVIVVKGRRAPWFEEVKALAQKYGVRFRLADQTWIKRLVG 68

Query: 107 KEAVHQGLALET-------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               HQG+   T        P +   L     + LL+V D + DP N+G +LR+A A   
Sbjct: 69  P-VNHQGVIARTHGYRYMAEPEMLQRLQQADRNALLVVADCIQDPMNLGNLLRTAYAVGA 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G++  K  +   ++V+ K+A+GA+ H+P  R++NLT A+      G   IG  + + + 
Sbjct: 128 QGVLIPKDRAVGVTSVVIKAAAGAMVHLPVCRVTNLTTAITHFKEIGLWVIGAEATASQT 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQN 278
           L        +AL++G EG+GLRP+ ++    +  + M G  + +LN + A AV +Y    
Sbjct: 188 LYGVDLTGPLALVIGGEGQGLRPRVKQACDLLVAIPMAGEQVGSLNAATAGAVMMYEIYR 247

Query: 279 HFA 281
             A
Sbjct: 248 QRA 250


>gi|331086557|ref|ZP_08335635.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330410390|gb|EGG89822.1| RNA methyltransferase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 262

 Score =  227 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 112/257 (43%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD 84
           ++   K++    +KS+  ++     + GV         P  ++ ++  ++  A  + +  
Sbjct: 6   SNARVKELVQLQKKSKVRNEQGVFLVEGVKMYQEI---PQEQLVKVYVSETFADKQKEEI 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVND 143
             L     ++ +      + V      QG+            D +      L+VLD++ D
Sbjct: 63  NRLKDRRKLEYLSDHVF-QYVSDTKTPQGILCVVRQSAYCLEDILEAEDAHLLVLDNLQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A      GII +K      +  + +S  G++  +P++ + +L +A+ K+ 
Sbjct: 122 PGNLGTILRTAEGAGVTGIIISKESVDIYNPKVIRSTMGSIYRVPFVYVEDLKEAIAKVK 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G  T     D K   ++E    K A ++G EG GLR    + A +   + M G +++L
Sbjct: 182 AHGIFTYAAHLDGKNSYDKEDYTKKTAFLIGNEGNGLRKDIADLADTWIRIPMQGQVESL 241

Query: 264 NVSNAAAVALYITQNHF 280
           N + A +V ++ T    
Sbjct: 242 NAAIATSVLMFETARQR 258


>gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
 gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
          Length = 322

 Score =  227 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 12/280 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL 71
               +   ++ R  R  +            S+    ++ G + V  AL    P+  ++  
Sbjct: 44  HKDKARTERIEREDRTGRPSSPRTPVRGRRSEDAPEYIGGRNPVLEALRAGVPASTLYIA 103

Query: 72  L-ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129
           L    +   +        H   +  V  + +D++  + A+HQG+AL+  P      + + 
Sbjct: 104 LRIDNDDRVKESVRIAADHGIAMLEVGKEKLDRLT-EGAIHQGMALQIPPYEYAHPEDLI 162

Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++ LD V DP N+GAI RSA AF   G++   R S   +    K+++G 
Sbjct: 163 GIAQDAAEVPLIVALDSVTDPRNLGAIARSATAFGAHGMVIPSRRSAGVTGGAWKTSAGT 222

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRP 242
           L H+   R +NLT  L++    G   IGL  +S   + +  + +  + +++G+EGKGL  
Sbjct: 223 LAHLTVARAANLTATLREYREAGLFVIGLDGESTVDIGDANLLDGPLVVVVGSEGKGLSR 282

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +E+   +  + M    ++LN   AA VALY    H  +
Sbjct: 283 LVRESCDLVVRIPMNAAAESLNAGVAAGVALYEVARHRRR 322


>gi|121639499|ref|YP_979723.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224991996|ref|YP_002646685.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260202767|ref|ZP_05770258.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           K85]
 gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|254765090|sp|A1KPR5|Y3644_MYCBP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BCG_3644c
 gi|121495147|emb|CAL73633.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224775111|dbj|BAH27917.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289536663|gb|EFD41241.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
          Length = 322

 Score =  227 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A LR +H   K+ ++  ++    +      L G + V   L    P+  ++  L T+ A 
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98

Query: 79  ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
            RL           +  V      +D++     +HQG+AL+  P      D +      +
Sbjct: 99  ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  
Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    
Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
           +  + M    ++LN S AA V L
Sbjct: 278 VVSIPMAAQAESLNASVAAGVVL 300


>gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis
           H37Ra]
          Length = 316

 Score =  227 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A LR +H   K+ ++  ++    +      L G + V   L    P+  ++  L T+ A 
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 98

Query: 79  ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
            RL           +  V      +D++     +HQG+AL+  P      D +      +
Sbjct: 99  ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 157

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  
Sbjct: 158 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 217

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    
Sbjct: 218 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 277

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
           +  + M    ++LN S AA V L
Sbjct: 278 VVSIPMAAQAESLNASVAAGVVL 300


>gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
           thermophilum H-6-12]
 gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
           thermophilum H-6-12]
          Length = 241

 Score =  227 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 118/235 (50%), Gaps = 11/235 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA--LARLDWDANLPH--PFPVKTVPPQTIDKIVG 106
           +YG + V  AL +    + ++   K      + +   NL      P+K V    I+K+VG
Sbjct: 5   IYGKNAVLEALKSNI-PLNKIYIAKGIHFDNKFNEILNLAKEKGVPIKYVERSVIEKMVG 63

Query: 107 KEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             +  QG+    + +     + +     N  +++VLDH+ DPHN+GAI R++       I
Sbjct: 64  GNS--QGVLAIISSVPYREWEDIEKTLNNKSVIVVLDHIQDPHNLGAIARTSEFAGASAI 121

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S   ++   K+++GAL +IP +R+SN+ + L+++   G+  +G   D++    Q
Sbjct: 122 VIPKARSAGVTSASFKASAGALSYIPVVRVSNIANFLRELKKKGWFIVGADLDTENLYNQ 181

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                 +AL++G+E +GL    +E+   +  +   G +++LNVS A  + LY  +
Sbjct: 182 VNYRFPLALVVGSEDEGLHRIVKESCDLLVKIPSYGKVESLNVSVALGIILYKIR 236


>gi|254796645|ref|YP_003081481.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
           str. Illinois]
 gi|254589882|gb|ACT69244.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia risticii
           str. Illinois]
          Length = 243

 Score =  227 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           Q E + ++G H   AA+ NP R I  +   +   A             +       I KI
Sbjct: 2   QQEKIVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPNISFCENTQIAKI 61

Query: 105 VGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            G++A+HQG+A+ T     P L   L       L+M+LD + DP N+G ILRS+ AF  D
Sbjct: 62  CGRDALHQGIAVITEKLSQPELRDVLKNTNKRSLVMILDSITDPFNVGNILRSSKAFGVD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+  +R+SPSE++V+AK+ASGALE IP   I+NLT+A++ +   G+    +   +   L
Sbjct: 122 AIVVKQRHSPSETSVIAKTASGALESIPVCTIANLTNAIKILQENGYFCYAMDGGASSKL 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALY 274
            +    +K+A +LG+EGKG+    +        + M       ++NVSNAAA+A++
Sbjct: 182 TEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYADKNFDSINVSNAAAIAMF 237


>gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440]
 gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica
           CNB-440]
          Length = 373

 Score =  227 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 13/254 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--HPFPVK 94
           +  + ++     L G + V  +L      I  L   +  N   R+             + 
Sbjct: 119 RRTNPAKDAPELLVGRNPVLESLRANVPAI-ALYVAQGLNTDDRISEIVRTAADRGIAML 177

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148
            V    +D++ G   +HQG+ L+  P      + +      + + LL+ LD V DP N+G
Sbjct: 178 EVSRAELDRMTG-GVLHQGVGLQVPPFRYEPFEDLTAAALEQPAPLLVALDGVTDPRNLG 236

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT AL+     GF 
Sbjct: 237 AVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFV 296

Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +GL +D +  L   E     + +++G+EG+GL     +T      + M   +++LN S 
Sbjct: 297 VVGLDADGETDLYHLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVQIPMVSDVESLNASV 356

Query: 268 AAAVALYITQNHFA 281
           AAAV L       A
Sbjct: 357 AAAVTLAEVARRRA 370


>gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
 gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
          Length = 318

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 16/277 (5%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQK--SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73
           +  A+ R  H+ Y+   + N++  +R         + G + V  AL    P   ++  L 
Sbjct: 38  TPKAEDRPGHKAYRAANAANKRDQARQKKADRPELIAGRNPVVEALRADVPGTALYVAL- 96

Query: 74  TKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129
             +   R++    L       +  +P + +D+     A+HQGL L+  P      D +  
Sbjct: 97  NIDIDDRVNEAVRLAGDKGISILEIPREELDRKT-NRAMHQGLGLQVPPFEYAHPDDLMQ 155

Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                 N+ L + LD V DP N+GA++RSA AF   G++  +R S   +AV  ++++G  
Sbjct: 156 AARDSGNTPLFVALDGVTDPRNLGAVIRSAAAFGAQGVLLPERRSAGMTAVAWRTSAGTA 215

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243
             +P    +NLT  L+   S G   +GL +D    ++  E+  D + ++LG+EG+GL   
Sbjct: 216 AKLPIAVATNLTRQLRAWASKGLMIVGLDADGTVDIDALELAADPLVVVLGSEGRGLSRL 275

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +ET  +   + M   +++LN S AA V L       
Sbjct: 276 VRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312


>gi|160937869|ref|ZP_02085227.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439095|gb|EDP16849.1| hypothetical protein CLOBOL_02761 [Clostridium bolteae ATCC
           BAA-613]
          Length = 247

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A  +     K+F L   ++   R        +   +  VP + +D+I
Sbjct: 4   EELTIEGRNAVLEAFRSGKTIDKLFVLDGCQDGPVRTILREARKYDTIINYVPKERLDQI 63

Query: 105 VGKEAVHQGLALETAPLLS-------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A              +       L++LD + DPHN+GAI+R+A   
Sbjct: 64  -SETGKHQGVIAYAAAYEYAEVEDMLKAAEEKGEPPFLILLDGIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GAL + P  +++NLT  ++ +   G   +      +
Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGE 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + +      I L++G EG+G+    +E    +A + M G I +LN S AA V  Y   
Sbjct: 183 -LMYKMNLKGSIGLVVGNEGEGVGKLVREHCDMVASIPMKGDIDSLNASVAAGVLAYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|320451443|ref|YP_004203539.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
           SA-01]
 gi|320151612|gb|ADW22990.1| RNA methyltransferase, TrmH family, group 3 [Thermus scotoductus
           SA-01]
          Length = 238

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 11/236 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +++YG + V  AL     ++ ++L  +   A L  +           VP   +D ++ + 
Sbjct: 1   MWIYGRNPVLEALKEG--RVRRVLVARGVEAWLLRELE-KLGAEYTLVPRIELDTLL-RS 56

Query: 109 AVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQGLA E        L+       A +   LL+ LD + DP N GA++RSA+A    G
Sbjct: 57  THHQGLAAEVEEPRYAPLEEAFLLAEARKELPLLVFLDGITDPRNYGAMIRSALALGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +++ +R S   S +  K+++GA   +P +++ NL  AL+++   G    GL     K   
Sbjct: 117 VVSEERRSAPLSPLALKASAGAALKLPVVKVKNLPRALEEVKQKGLWVYGLDVRGAKTPR 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +      +AL+LG+EG+G+R   +E+   +  + M    ++LN S A  +ALY   
Sbjct: 177 ELDFQRPLALVLGSEGEGMRRLVRESCDELFRIPMREEAESLNASVALGIALYAVA 232


>gi|240172165|ref|ZP_04750824.1| tRNA/rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 310

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/270 (26%), Positives = 127/270 (47%), Gaps = 12/270 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A +R NH   K+ ++  ++   +   E   + G + V   L    P+  ++  L  + A 
Sbjct: 41  AHMRPNHPAAKRAKAAPRRPVRSRIDEAETVLGRNPVLECLRAGVPATALYVALGAE-AD 99

Query: 79  ARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
            R+             +  VP   +D++     +HQG+AL+  P      D +       
Sbjct: 100 ERVTESVARAADSGISILEVPRADLDRMTANH-LHQGIALQVPPYHYAHPDDLLAAAMDT 158

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  
Sbjct: 159 PPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 218

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  L+     G + IGL +  +  ++    +D + +++G+EGKGL    ++    
Sbjct: 219 RATNLTRTLKDWADRGLRVIGLDAAGETAVDDLDGSDPLVVVVGSEGKGLSRLVRQNCDE 278

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M G  ++LN S AA V L       
Sbjct: 279 VVSIPMAGRAESLNASVAAGVVLAEIARQR 308


>gi|297563234|ref|YP_003682208.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847682|gb|ADH69702.1| RNA methyltransferase, TrmH family, group 3 [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 320

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 131/284 (46%), Gaps = 23/284 (8%)

Query: 19  HYAKLRRNHRDYKKMQSFN-----QKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL 71
           H+ + ++  R  ++  S       Q+        +  L G + V  AL    P+ ++F L
Sbjct: 35  HWYEGKQRARAARRPDSGGGARGPQQGERRRADASDLLVGRNPVVEALRAGMPATRLF-L 93

Query: 72  LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIV----GKEAVHQGLALETAPLLSPT 125
             + +   R++  A +       V  V    +D+         A HQGLAL+  P     
Sbjct: 94  ANSLDPDERVNEAARIAGERGLDVLEVTKTELDRRCESNGQPGAAHQGLALQVRPYQYRA 153

Query: 126 LDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            +A+           L++ LD V DPHN+GAI RSA AF+  G++  +R S   +    K
Sbjct: 154 PEALLDTALESDTPALIVALDGVTDPHNLGAIARSAAAFNAHGLLIPERRSAGVNLTAWK 213

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEG 237
           +++G L  +P  + +NLT AL+     G   +GL +    P+ + E+    + +++G+EG
Sbjct: 214 TSAGTLARLPVAQATNLTRALEGYKKEGVFVVGLDAGGDTPIPDLELATGPLVIVIGSEG 273

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           KGL    +E    +A + + G  ++LN S AA V+LY      +
Sbjct: 274 KGLSRLVREACDVVASIPI-GNAESLNASVAAGVSLYEVARRRS 316


>gi|285018766|ref|YP_003376477.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283473984|emb|CBA16485.1| probable trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 248

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN   +   +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSIENDADNVREVLVEAGSKNPRLQEIEENARRKGIEVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG    HQG+A   A         L   + A +   LL+VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGSVRHQGVAARYAAARTWAESELEGLVAAAQGRALLLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S   +A + K+++GA + +P + ++NL   L+++   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSAPVNATVRKTSAGAADRLPIVAVTNLARCLRELQKQGVWIYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L  +     +AL+LG E  GLR  T+E    +  + MPG I++LNVS AA V L+ 
Sbjct: 182 AETSLYAQDLRGNVALVLGGESDGLRRLTREHCDGLVRIPMPGEIESLNVSVAAGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
 gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
          Length = 323

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 18/283 (6%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNN--PSRKIF 69
            +   K  + +R    M     K R   +          + G + V  AL +  P+  ++
Sbjct: 38  KAEDRKKHKANRIANAMARQAAKRRPAPRRGGPKGTSEMVVGRNPVFEALRDGVPATTLY 97

Query: 70  --QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             Q +     +      A       +   P   +D++      HQGL L+  P      +
Sbjct: 98  VQQFIDNDERVRDALKLAGERGNINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPE 156

Query: 128 AVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            + ++        L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   K++
Sbjct: 157 DLLDAAHDNGEDALIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTS 216

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKG 239
           +G     P  R++NLT ALQ     G   +GL+++    ++        + +++G+EGKG
Sbjct: 217 AGTAARTPVSRVTNLTRALQDYKKAGITVVGLAAEGTHEVQDLDALGGPVVIVVGSEGKG 276

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L     E    +  + MPG  ++LN   AA V LY      A+
Sbjct: 277 LGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLYEAARKRAQ 319


>gi|86143959|ref|ZP_01062327.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85829666|gb|EAQ48129.1| putative tRNA:rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 245

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 11/241 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG   +  A+       KI+      N L++            V  VP + + K+   +
Sbjct: 7   IYGTRAIIEAIQAGKEIGKIYLQKGLSNPLSKELEKLIREQGISVSYVPQEKLYKLS--D 64

Query: 109 AVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG     +P+     +A            L ++LD + D  N GAI+R+AV    D 
Sbjct: 65  QNHQGAIATISPIQFAEFEATAEAVLAASKPGLFLLLDQLTDVRNFGAIIRTAVCTGVDA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K      +    K+++GA+ +IP  ++ ++ DAL  +   G Q +  +  ++  + 
Sbjct: 125 IIIPKSGGAPVTDDTVKTSAGAIFNIPICKVDHIKDALFYLQGSGVQVVAATEKTEDSIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   AL++G+EGKG+ P   +     A L M G I +LNVS A    LY       
Sbjct: 185 DLDYTTPTALVMGSEGKGVTPGVLKLVDHKAKLPMAGTISSLNVSVACGAFLYEVVRQRI 244

Query: 282 K 282
           K
Sbjct: 245 K 245


>gi|315503474|ref|YP_004082361.1| RNA methyltransferase, trmh family, group 3 [Micromonospora sp. L5]
 gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5]
          Length = 371

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 11/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKT 95
           +  + ++     L G + V  +L    P+  ++       +   +            +  
Sbjct: 117 RKANPAKDSPELLVGRNPVLESLRTQVPATALYTAQGIDVDDRVKEIIRTAADRGIAILE 176

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGA 149
           V    +D++ G   +HQG+ L+  P      D +      + + LL+ LD V DP N+GA
Sbjct: 177 VSRAELDRMTG-GVLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLGA 235

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF  
Sbjct: 236 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVV 295

Query: 210 IGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL +D +  L   E     + +++G+EG+GL     ET      + M   +++LN S A
Sbjct: 296 VGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASVA 355

Query: 269 AAVALYITQNHFA 281
           AAV L       +
Sbjct: 356 AAVTLAEVARRRS 368


>gi|291522469|emb|CBK80762.1| rRNA methylase, putative, group 3 [Coprococcus catus GD/7]
          Length = 247

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +     K+F L   ++   +            +  V  + +D++    
Sbjct: 8   IEGRNPVIEAYRSGKTIDKLFVLDGCQDGPVKTITREARKQHTIISYVSKERLDQLSETH 67

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    A     ++D +            + +LD + DPHN+GAI+R+A      G
Sbjct: 68  -HHQGVIAIAAAYDYASVDDILAKAREKGEEPFIFLLDGIEDPHNLGAIIRTANLAGAHG 126

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A +A++++GAL   P  +++NL  A+ ++   G   +      +    
Sbjct: 127 VIIPKHRAVGLTATVARTSAGALNFTPVAKVTNLGAAMDELKKEGLWFVCADMKGEVMYR 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           Q      I L++G EG+G+    +E     A + M G I +LN S AA V  Y      
Sbjct: 187 Q-NLTGPIGLVIGNEGEGVSRLVREKCDFTASIPMKGDIDSLNASVAAGVLAYEIVRQR 244


>gi|289450233|ref|YP_003475064.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184780|gb|ADC91205.1| RNA methyltransferase, TrmH family, group 3 [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 307

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/279 (23%), Positives = 121/279 (43%), Gaps = 27/279 (9%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           SLK +   +    H D +K+ +   +           L G + V  AL    R+I ++  
Sbjct: 37  SLKVARERENTGGHADTEKIATREDR-----------LEGRNPVIEALR-AGRQIDKIWV 84

Query: 74  TKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
                 R          +  +     V  VP   +D +    A HQG+  + A +    +
Sbjct: 85  QAMGDGRRPEPTLAGIVNMAISSGAVVNQVPRSVLDNMSQTGA-HQGVIAQAAVIPYVDI 143

Query: 127 DAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           D +       +    +++ D + D +N+GAILR+A +    G++  K    +  AV AK+
Sbjct: 144 DEILAVAAAKQEDPFIIIADEIQDSYNLGAILRTAESAGVHGVVFPKHRQVTLDAVTAKA 203

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ++GA+ H+P  R++NL   +  +   G    GL+ D +   + +     IAL++G EGKG
Sbjct: 204 SAGAVNHVPCARVNNLVQTMNYLKGKGVWIAGLNMDGESIFDNKKMTGPIALVVGNEGKG 263

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +     +       + M G++ +LN + A  +A++ T  
Sbjct: 264 ISRLVADNCDFTVSIPMQGVLNSLNAAVATGIAVFETLR 302


>gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258249|gb|EDS72215.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
           17244]
          Length = 242

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 12/235 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           + G + V   L    R + +L  ++N  + L     +       ++      +D + G  
Sbjct: 7   VIGRNAVRETLK-AGRNVNKLYISENHDSGLVSIIKMAKSKGISIQKTNNHKLDSMSGST 65

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+ + +L  +           L+++LD++ DPHN GAI+RSA     DG
Sbjct: 66  -HHQGVLALCSPVETISLRELIEKMNEKVTKPLVVILDNITDPHNAGAIIRSAYCAGADG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R S S    + KS++GA+EHI    +SN+   +  +   G   +GL  + +    
Sbjct: 125 VIMQTRRSASIGEGMYKSSAGAIEHIDLCEVSNIAQTIDTLKKEGLFVVGLDMNGEN-YY 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +  +AL++GAEGKGL    +E    ++ + +     +LN S AA + L+  
Sbjct: 184 DMDYDMPLALVVGAEGKGLGRLIKEKCDFISSIPLKNDFDSLNASVAAGIVLFEA 238


>gi|169634562|ref|YP_001708298.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|215484855|ref|YP_002327094.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
 gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013150]
 gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013113]
 gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6014059]
 gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2]
 gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013150]
 gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6013113]
 gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
           baumannii 6014059]
          Length = 249

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 12/242 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIVGKE 108
           YGVH+V + L     ++  L   K     RL     L       V+     +++K+ G  
Sbjct: 8   YGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGL- 66

Query: 109 AVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+     P   L    LD +       LL+ LD V DPHN+GA +R+A A     +
Sbjct: 67  PFHQGVVAAVRPHPTLNEKDLDQLLAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAV 126

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK-PL 220
           I  +  S S +    K A+G  E + +I+++NL   L  +      + IG   D    P+
Sbjct: 127 IVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPI 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++   +  + +++GAE  GLRP TQ      A++ M G +++LNVS A  +ALY      
Sbjct: 187 QKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQR 246

Query: 281 AK 282
           ++
Sbjct: 247 SE 248


>gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris
           AB-18-032]
          Length = 373

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 13/254 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--ARLDWDANLP--HPFPVK 94
           +  + ++     L G + V  AL         L   +      R++            + 
Sbjct: 119 RKSNPAKDAPELLVGRNPVLEALR-AQVPATALYTAQGIDMDDRVNEIIRTAADRGIAIL 177

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148
            +    +D++ G   +HQG+ L+  P      + +      +++ LL+ LD V DP N+G
Sbjct: 178 EISRAELDRMTG-GVLHQGVGLQVPPFAYEPFEDLVAAALEQSAPLLVALDGVTDPRNLG 236

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF 
Sbjct: 237 AVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACRDAGFM 296

Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +GL +D +  L   E     + +++G+EG+GL     +T      + M   +++LN S 
Sbjct: 297 VVGLDADGETDLYDLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVSIPMVSEVESLNASV 356

Query: 268 AAAVALYITQNHFA 281
           AAAV L       A
Sbjct: 357 AAAVTLAEVARRRA 370


>gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
           odontolyticus F0309]
 gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
           odontolyticus F0309]
          Length = 325

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 132/290 (45%), Gaps = 15/290 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           + K  ++ +    +H  K++R  R+ ++  +     KS    +P +  + G + V+ A  
Sbjct: 38  TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95

Query: 63  N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
              P  ++F L   K+               PV  V  + +D +    AVHQG+A+E   
Sbjct: 96  ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRG 154

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                   +           LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +
Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALI 232
               K ++GA   +P  R +NL  AL++    G+  +GL      PL    + +  + ++
Sbjct: 215 TTAWKVSAGAAARVPVARATNLVRALEEAKQAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GAEG GL    +ET   +  + +   +++LN + A  +ALY   +  A+
Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAQ 324


>gi|119356408|ref|YP_911052.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266]
 gi|119353757|gb|ABL64628.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides DSM 266]
          Length = 252

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 8/250 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           +K +   Q E + +YG + V   L      I ++    N       +  +          
Sbjct: 2   EKEKDMEQQEKV-VYGRNAVLELLLKKPDSIEKIYFQFNTSHPKLKEILVSARRQKLVTG 60

Query: 98  PQTIDKIV--GKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGAI 150
              ++++        HQG+    + +   T++ V +       LL++L  + DPHNIGAI
Sbjct: 61  KARLERLSLMAGTTKHQGVCALVSAVSYYTIEEVLDKPRNTFPLLLILQGLEDPHNIGAI 120

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A + D ++  +      +A + K+++GAL H+   ++ +L   L+ +H   F  I
Sbjct: 121 IRTAEAVAADAVLLIEGKGSPVNATVHKASAGALSHMRVCKVKSLVRCLEFLHERKFLII 180

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               D++           +A++LGAEG GL P+  +       + M G +++LNVS  A 
Sbjct: 181 AADMDAEINYTDIDLTKALAIVLGAEGSGLAPEAVKFCDHTVRIPMAGCVESLNVSVTAG 240

Query: 271 VALYITQNHF 280
           V LY      
Sbjct: 241 VLLYEAMRQR 250


>gi|88608166|ref|YP_506155.1| RNA methyltransferase [Neorickettsia sennetsu str. Miyayama]
 gi|88600335|gb|ABD45803.1| RNA methyltransferase, TrmH family, group 3 [Neorickettsia sennetsu
           str. Miyayama]
          Length = 243

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 127/236 (53%), Gaps = 6/236 (2%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           Q E + ++G H   AA+ NP R I  +   +   A             +       I KI
Sbjct: 2   QQEKVVIFGKHAAVAAIKNPERNILSIFIAREKKAVYLPLLERSRLPNISFCENTQIAKI 61

Query: 105 VGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            G++A+HQG+A+ T     P L   L +     L+++LD + DP NIG ILRS+ AF  D
Sbjct: 62  CGRDALHQGIAVVTEKLSQPELRDVLKSTSKRSLVIILDSITDPFNIGNILRSSKAFGVD 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  +R+SPSE++V+AK+ASGALE IP   I+NLT+A++ +   G+    L   ++  L
Sbjct: 122 ALVVKERHSPSETSVIAKTASGALESIPVCTIANLTNAVKILQENGYFCYALDGGARSKL 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALY 274
            +    +K+A +LG+EGKG+    +        + M       ++NVSNAAA+A++
Sbjct: 182 TEIRFPNKVAFVLGSEGKGISHLLKTRCDQTLSIPMYSDKNFDSINVSNAAAIAMF 237


>gi|215447913|ref|ZP_03434665.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 296

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 13/263 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNAL 78
           A LR +H   K+ ++  ++    +      L G + V   L    P+  ++  L T+ A 
Sbjct: 15  AHLRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-AD 72

Query: 79  ARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------R 130
            RL           +  V      +D++     +HQG+AL+  P      D +      +
Sbjct: 73  ERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQ 131

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  
Sbjct: 132 PPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVA 191

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    
Sbjct: 192 RATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDE 251

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
           +  + M    ++LN S AA V L
Sbjct: 252 VVSIPMAAQAESLNASVAAGVVL 274


>gi|213965128|ref|ZP_03393326.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           amycolatum SK46]
 gi|213952242|gb|EEB63626.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
           amycolatum SK46]
          Length = 314

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 132/292 (45%), Gaps = 27/292 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ-PENLFLYGVHTVSAA 60
              + K  ++++    +H     +  RD           RH  +      + G + V   
Sbjct: 31  KGPTPKAEDRVYHA--AHKRANEKRRRD---------SGRHERKGDGTELVVGRNPVVEC 79

Query: 61  LNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L+   P+  +   L T N   RL     +      P++ VP   +D + G   +HQG+ L
Sbjct: 80  LHAKVPAAALIVALGTDN-DERLQESVRIANSRGIPIREVPRHELDTMTG-NTMHQGIGL 137

Query: 117 ETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +       +++ +           L++ LD++ DP N+GA++RS  AF   G++  +R S
Sbjct: 138 QIPSYKYSSVEDLIDSVAKTGEPGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRS 197

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            + + V  ++++G    +P  R +N+  +L++    G+Q +GL +     L+       +
Sbjct: 198 AAITGVAWRTSAGTAARLPVARATNMVRSLKQFQKAGYQIVGLDAGGDHTLDTYDGTTPV 257

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
            +++G+EGKGL    ++T  ++  + M G +++LN S AA V L  +  Q  
Sbjct: 258 VVVVGSEGKGLSRLVRDTCDTIMSIPMTGWVESLNASVAAGVTLSEFARQRR 309


>gi|227538387|ref|ZP_03968436.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241769|gb|EEI91784.1| possible tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 259

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 15/262 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PH 89
           MQ+F +  R+  +  N  ++G+  V  A+++    I  L   +     L  +       H
Sbjct: 1   MQNFQRHDRNEKRESNQMVFGIRAVIEAIDSGKE-IESLFVQRGLGGSLFLELKALIKEH 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142
               + VP + +++I  K   HQG+    +P+    ++ +         + L+++LD V 
Sbjct: 60  EIGFQQVPIEKLNRITRK--NHQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GAI R+A       II  K+ S   +    K+++GAL  IP  R  NL    + +
Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +  +  +++ +          +I+GAE  G+       +  +A + M G I +
Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDVGVSDDLIRISDHLAKIPMFGEIGS 237

Query: 263 LNVSNAAAVALYI--TQNHFAK 282
           LNVS +A V LY    Q    K
Sbjct: 238 LNVSVSAGVVLYEAIRQRQITK 259


>gi|297618403|ref|YP_003703562.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 250

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 107/240 (44%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           + G++ VS AL    R+I ++    +   R              PV++V    +  +   
Sbjct: 5   IEGINWVSEALK-AGRQIHRIYVDDSRKDRRVESILAHAHKRGIPVESVGKNQLRSMSAS 63

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +  QG+    +P     ++ +            L++LD V DP N+GAI+R+A      
Sbjct: 64  GS-PQGVVALASPYHYWPIEDILEFTQSRGEQPFLILLDGVEDPQNLGAIIRTAECAGVH 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+    +S   +  + ++++GA+EH+    ++NL  A++++   G   +G  + +    
Sbjct: 123 GIVLPLHHSVKVTPAVGRASAGAVEHMKIALVTNLVRAIEELKQGGLWIVGADAMANHTY 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +AL+ G EG+G+R   +E    +  + M G + +LNVS A A+  +      
Sbjct: 183 FEVSLAAPLALVFGGEGRGIRRLVREHCDILVSIPMFGQLNSLNVSTACALVTFEVLRQR 242


>gi|195952691|ref|YP_002120981.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932303|gb|ACG57003.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 251

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 106/238 (44%), Gaps = 7/238 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           ++  ++G + V  AL         L+A  +   +   D        V+  P Q ++++  
Sbjct: 7   QSYVIWGRNPVIEALVAGQSMEKILIAHDSKAPKELLDLAKERGIKVQIAPRQKLEELAN 66

Query: 107 KEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +   QG+    +P+     + +           +VLDH+ DP N+G+I R+   F   G
Sbjct: 67  TKKT-QGVVAILSPITYVPEEELFRKTIEEKGFFVVLDHITDPQNVGSIARTVEVFGGIG 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K  S   +AV+ KS+SGA+ H+   +  +++ A++     G     L     K + 
Sbjct: 126 LLIPKDRSAPINAVVVKSSSGAIFHLKISKTPSISKAIKTFKEMGGWVYALE-KGGKDIT 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +      + ++LG+EG+G+     E +     + M G + +LNVS A A+ L+    +
Sbjct: 185 KVDFAYPMCIVLGSEGEGVSKNVLEHSDVRVSIPMKGKVTSLNVSAAGAICLWEVYKN 242


>gi|302870247|ref|YP_003838884.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
           aurantiaca ATCC 27029]
 gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
           aurantiaca ATCC 27029]
          Length = 371

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 13/254 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP--HPFPVK 94
           +  + ++     L G + V  +L         L   +  +   R+             + 
Sbjct: 117 RKANPAKDSPELLVGRNPVLESLRT-QVPATALYTAQGIDVDDRVKEIVRTAADRGIAIL 175

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148
            V    +D++ G   +HQG+ L+  P      D +      + + LL+ LD V DP N+G
Sbjct: 176 EVSRAELDRMTG-GVLHQGVGLQVPPFAYEPFDDLVAAALEQAAPLLVALDGVTDPRNLG 234

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF 
Sbjct: 235 AVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFV 294

Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +GL +D +  L   E     + +++G+EG+GL     ET      + M   +++LN S 
Sbjct: 295 VVGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSDVESLNASV 354

Query: 268 AAAVALYITQNHFA 281
           AAAV L       +
Sbjct: 355 AAAVTLAEVARRRS 368


>gi|145220210|ref|YP_001130919.1| RNA methyltransferase [Prosthecochloris vibrioformis DSM 265]
 gi|145206374|gb|ABP37417.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeovibrioides DSM 265]
          Length = 249

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 7/241 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV- 105
           +   +YG + V   L      I ++    N       +  +             ++K+  
Sbjct: 7   QENIVYGRNAVLELLREKPGSIEKIYFQFNTTHPKLKEILITARRQKLITGKARLEKLSL 66

Query: 106 -GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                 HQG+    + +   T++ +       + LL+VL  ++DPHNIGAI+R+A A + 
Sbjct: 67  IAGTTKHQGVCALISTVTYYTIEELLSVPRNTAPLLVVLQGLDDPHNIGAIIRTAEAVAA 126

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG++  +      +AV+ K+++GAL H+   ++ +L  +L+ +H+ G + I    +++  
Sbjct: 127 DGVVLVEGKGAPVNAVVHKASAGALSHMRVAKVKSLVRSLEFLHANGIRVIATDMEAETN 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     A++LGAEG GL P+  E       + M G +++LNVS  A V LY     
Sbjct: 187 YTDADFRLPTAIVLGAEGSGLAPEAMEYCDETLRIPMAGCVESLNVSVTAGVVLYEVMRQ 246

Query: 280 F 280
            
Sbjct: 247 R 247


>gi|296133375|ref|YP_003640622.1| RNA methyltransferase, TrmH family, group 3 [Thermincola sp. JR]
 gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
          Length = 268

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 108/252 (42%), Gaps = 6/252 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPF 91
           +QS  QK ++  +     + G+  V  AL + +  I +L+     L +   + + +P   
Sbjct: 16  LQSLLQK-KYRDREGKFLVEGLRFVQEALQSGA-DIEELILAAGVLEKNPSFQSIIPDKI 73

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAI 150
           P+  +  Q   KI   E   QG+A           D  V  +  L+++D V DP N+G I
Sbjct: 74  PITIIADQLFKKITDTE-TPQGIAALVRKKEFRAEDLFVVANPFLLIIDKVQDPGNLGTI 132

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A    G+   K  +   +    ++  G++ H+P I   ++ +A       G + I
Sbjct: 133 IRTADAAGVTGVALVKGTADLYNPKTLRATMGSVFHVPIINFDSIEEACHLAKKHGLKLI 192

Query: 211 GLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               S           ++ +AL++G E +G      E +     + MPG  ++LNVS AA
Sbjct: 193 VTDISKDSSSYLAVDYSEPVALVVGNEARGASSFAIENSDYRVAIKMPGKAESLNVSVAA 252

Query: 270 AVALYITQNHFA 281
            + L+      A
Sbjct: 253 GIILFEAARQRA 264


>gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
           salmoninarum ATCC 33209]
 gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
           salmoninarum ATCC 33209]
          Length = 336

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 116/261 (44%), Gaps = 18/261 (6%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVK 94
           Q+++   +P    + G ++V  AL      K   +        R+     L      P+ 
Sbjct: 66  QRTQRRGRPSEEMVTGRNSVVEALRAGIPAKALYIAVRIEVDDRVKEVLKLASERGIPLM 125

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------------RNSQLLMVLDHV 141
                 +D++   +AVHQGLAL+  P   P    +             +NS L++ LD +
Sbjct: 126 ETHKPELDRMTD-DAVHQGLALQIPPYDYPDAIDIAQETVDKFKKGYIKNSPLIVALDGI 184

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GAI+RS  AF+   +I  +R S   +A   K+++GA   +P  R  NL  AL+ 
Sbjct: 185 TDPRNLGAIIRSVSAFAGQAVIVPERRSVGLTASAWKTSAGAAVRVPVARAGNLNRALES 244

Query: 202 MHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               G+  +GL  D    L    +  + + +++G+EGKGL    +E    +  + +   +
Sbjct: 245 FKGMGYFVLGLDGDGDVSLPALAVAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAM 304

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN S A  + LY      +
Sbjct: 305 ESLNASMAVGITLYEIARQRS 325


>gi|228476493|ref|ZP_04061183.1| rRNA methylase [Streptococcus salivarius SK126]
 gi|228251914|gb|EEK10960.1| rRNA methylase [Streptococcus salivarius SK126]
          Length = 245

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I S +      L+R HR                   +  L G H    A
Sbjct: 1   MEIIQSKQNASIKSARKL----LQRKHR-----------------KTSYLLEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I Q+   +    R      + +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGADILQVFVLEEMANR------VANMAKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +++    LL  L+ V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QSQALPESLSGKYLL--LEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  R   + D ++     G   +  + SD     +    +   AL++G EG+G
Sbjct: 150 QGSHFHLPIYRGP-ILDMVEACKKQGVPVLATTLSDISVDYKAVKTDGNFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 209 ISQDMAESADQLVHISMPGQAESLNVAVAAGILMF 243


>gi|99081889|ref|YP_614043.1| RNA methyltransferase TrmH, group 3 [Ruegeria sp. TM1040]
 gi|99038169|gb|ABF64781.1| RNA methyltransferase TrmH group 3 [Ruegeria sp. TM1040]
          Length = 262

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 7/236 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E ++L+G+H V  AL NP R+  +L+ T NA  +L+ DA        + V P+     + 
Sbjct: 25  ETVWLFGLHAVRDALLNPKREKLRLVVTLNAQNKLE-DAIATSGITPEVVDPRKFSVPID 83

Query: 107 KEAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             +VHQG ALE  PL    L+          +++LD V DPHN+GAILRSA       +I
Sbjct: 84  PGSVHQGAALEVKPLNWGGLEDNCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGASAVI 143

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            T+ +S  E+  LAK+ASGALE  PY+R+ NL+D +  +   G+  +GL  ++++ +E+ 
Sbjct: 144 GTRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEA 203

Query: 224 IKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     + IAL+LGAEG GLR KT+ET   +  +       +LNVSNAAA++LY +
Sbjct: 204 VAGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYAS 259


>gi|218295896|ref|ZP_03496676.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
           Y51MC23]
 gi|218243634|gb|EED10162.1| RNA methyltransferase, TrmH family, group 3 [Thermus aquaticus
           Y51MC23]
          Length = 238

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 11/236 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +++YG + V  AL     +  ++L  +     L  + +         VP   +D ++ K 
Sbjct: 1   MWIYGRNPVLEALREGRAR--EVLVARGVEGWLLKELDRL-GASYTLVPRIELDTLL-KT 56

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+A         +L+             LL+ LD + DP N GA++RSA+A    G
Sbjct: 57  THHQGIAALVEEPRYASLEEAFLLAQKRGEPPLLVALDGITDPRNYGAMIRSALALGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +++ +R +   S +  K+++GA   +P IR+ NL  AL+++   G    GL    +K   
Sbjct: 117 VLSEERRAAPLSPLALKASAGAALKLPVIRVKNLPRALKELKERGVWVYGLDLKGEKAPR 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +      +AL++G+EG+G+R   +E+   +  + +    ++LN S A ++ALY   
Sbjct: 177 ELDFKRPLALVVGSEGEGMRRLVRESCDELFRIPIRPEAESLNASVALSIALYQAA 232


>gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
 gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
          Length = 318

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 16/277 (5%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQK--SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLA 73
           +  A+ R  H+ Y+   +  ++  +R     +   + G + V  AL    P+  ++  L 
Sbjct: 38  TPKAEDRPGHKAYRSANAATKRDQARQKKADKPELIAGRNPVVEALRAGVPATALYVALN 97

Query: 74  TKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129
            +    R++    L       +  +P + +D+     AVHQGL L+  P      D +  
Sbjct: 98  IE-IDDRVNDAVRLAGDKGISILEIPREELDRKT-NRAVHQGLGLQVPPFEYAHPDDLMA 155

Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L + LD V DP N+GA++RSA AF   G++  +R S   +AV  ++++G  
Sbjct: 156 AARNSGEVPLFVALDGVTDPRNLGAVIRSAAAFGAHGVLLPERRSAGMTAVAWRTSAGTA 215

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243
             +P    +NLT  L+   + G   +GL +D    +++ E+  D + ++LG+EG+GL   
Sbjct: 216 AKLPIAVATNLTRQLKAWANDGLMLVGLDADGSVDIDELELAADPLVIVLGSEGRGLSRL 275

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +ET  +   + M   +++LN S AA V L       
Sbjct: 276 VRETCDATVSIPMAAGVESLNASVAAGVLLAEVARRR 312


>gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222525486|ref|YP_002569957.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
           Y-400-fl]
 gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
           Y-400-fl]
          Length = 252

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 118/247 (47%), Gaps = 15/247 (6%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH--PFPVKTVPPQTIDK 103
              LYG + V  +L    R   +L  +++      +    NL      PV+ +  QT+D+
Sbjct: 3   TELLYGRNAVRESLRARRRVFHRLYVSQSVQESGIIAEIINLAQQAGVPVERIERQTLDR 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL-------DHVNDPHNIGAILRSAVA 156
            + ++A HQG+ LE  P     LD   N+             DH+ DP NIG +LR+A A
Sbjct: 63  RL-RDANHQGVMLEAEPYPYVELDTCLNAAAERREAALLLLLDHLQDPQNIGTLLRTAEA 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
             C G++   R +   +  +  ++SGA+EH+    ++NL   ++++   G   +GL  D 
Sbjct: 122 VGCHGVVIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLNQTIEELQHAGIWVVGLEQDE 181

Query: 217 -KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY- 274
             + ++    +  +AL++GAEG G+    +E    +  L + G + +LN + A ++A+Y 
Sbjct: 182 QAQDIDAVDLDLPLALVIGAEGTGIARLVRERCDFLVRLPIVGQVGSLNAAIAGSIAIYH 241

Query: 275 -ITQNHF 280
              Q H 
Sbjct: 242 AWRQRHR 248


>gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
 gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
          Length = 376

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 116/254 (45%), Gaps = 13/254 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVK 94
           +  + ++     L G + V  +L    P+  ++     +    R++            + 
Sbjct: 122 RKSNPAKDTPELLVGRNPVLESLRAQVPATALYTAHGIE-IDDRVNEIVRTAADRGIAIL 180

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIG 148
            +    +D++ G   +HQG+ L+  P      + +      + + LL+ LD V DP N+G
Sbjct: 181 EISRAELDRMTG-GVLHQGIGLQVPPFAYEPFEDLVAAALEQTAPLLVALDGVTDPRNLG 239

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++RSA AF   G+   +R +   +A   ++++GA   +P  +++NLT +L+     GF 
Sbjct: 240 AVIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACQDAGFM 299

Query: 209 TIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +GL +D    L   E     + +++G+EG+GL     ET      + M   +++LN S 
Sbjct: 300 VVGLDADGDTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIPMVSEVESLNASV 359

Query: 268 AAAVALYITQNHFA 281
           AAAV L       A
Sbjct: 360 AAAVTLAEVARRRA 373


>gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           johnsonii SH046]
 gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           johnsonii SH046]
          Length = 249

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 112/245 (45%), Gaps = 13/245 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIV 105
            + YGVH+V + L     ++  L   K     RL     L       V+      ++K+ 
Sbjct: 5   EYFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQTGRDRLEKMA 64

Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159
           G    HQG+     P        L+A+       LL+ LD V DPHN+GA +R+A A   
Sbjct: 65  GL-PFHQGVVAAVRPNPVFNEKDLEALLKQSPNCLLLGLDQVTDPHNLGACIRTAAAMGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKK 218
           + +I  +  S S +    K A+G  E + +I+++NL   L ++   +  + +G   D K 
Sbjct: 124 EAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQIKDEFNVRVVGTMLDEKA 183

Query: 219 -PLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            PL+Q       + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY  
Sbjct: 184 LPLQQFDFTGTAVCVVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGMALYEA 243

Query: 277 QNHFA 281
                
Sbjct: 244 CRQRN 248


>gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 325

 Score =  226 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 15/290 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           + K  ++ +    +H  K++R  R+ ++  +     KS    +P +  + G + V+ A  
Sbjct: 38  TPKAEDRTYHP--AHKRKVKREAREAQEAAIARARAKSSIRVKPGHELIAGRNPVAEAAR 95

Query: 63  N--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
              P  ++F L   K+               PV  V  + +D +    AVHQG+A+E   
Sbjct: 96  ASVPIERVFVLDNVKDDRVEEVVRLASAMGAPVYEVTRRDLD-VATDGAVHQGVAIEVRG 154

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                   +           LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S   +
Sbjct: 155 YEYADASDLIAGSLQQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVN 214

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALI 232
               K ++GA   +P  R +NL  AL++    G+  +GL      PL    + +  + ++
Sbjct: 215 TTAWKVSAGAAARVPVARATNLVRALEEAKRAGYFVVGLDGGGDAPLRGLSLADGPLVVV 274

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GAEG GL    +ET   +  + +   +++LN + A  +ALY   +  AK
Sbjct: 275 TGAEGAGLSRLVRETCDQIVSIPIASTVESLNAAVATGIALYEVASLRAK 324


>gi|148555341|ref|YP_001262923.1| RNA methyltransferase [Sphingomonas wittichii RW1]
 gi|148500531|gb|ABQ68785.1| RNA methyltransferase, TrmH family, group 3 [Sphingomonas wittichii
           RW1]
          Length = 247

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/221 (40%), Positives = 134/221 (60%), Gaps = 9/221 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G H V AAL NP R + +L  T+ A++ L+    LP   PV       + ++V  +A H
Sbjct: 18  WGRHAVIAALANPDRTVKRLWGTREAVSALE----LPPVIPVTYADAADLGRLVPHDAPH 73

Query: 112 QGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           QGL +E  PL    L  +      + + L+VLD V DPHN+GA+LRSA AF   GI+T  
Sbjct: 74  QGLVIEVDPLPDIWLGDLLEAAQGDRRPLVVLDQVTDPHNVGAVLRSAAAFDAVGIVTQD 133

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R++P ES  LA+SASGALE +P++R+ NL  AL ++   GF  IGLS  ++  L Q + +
Sbjct: 134 RHAPPESGALARSASGALELVPWVRVVNLARALDEIAEAGFWRIGLSGHARGTLAQVMGD 193

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +IA++LGAEG+G+R  T+     +A L +   +++LN+SN
Sbjct: 194 SRIAIVLGAEGEGMRQNTEAHCDELAKLPISPKVESLNISN 234


>gi|213962013|ref|ZP_03390278.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           sputigena Capno]
 gi|213955366|gb|EEB66683.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           sputigena Capno]
          Length = 245

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           Q +   +YG+  +  AL       K+F     +  L +           PV+ VP + ++
Sbjct: 2   QEQETQIYGIRALIEALKAGKTIDKVFLQKGLQGGLYKELMPLLQAAQVPVQYVPVEKLN 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K   HQG+    +P+     + +         + L +VLDH++D  N GAI+R+A 
Sbjct: 62  RLTKK--NHQGVVANLSPVDYHNFEDLVISVTESGTTPLFLVLDHLSDVRNFGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  KR S S +A   K+++GA+  +P  ++ NL DA+  +   G + +  +  
Sbjct: 120 CTGVSGIIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVATTEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + L  E      A+++GAE  G+ P   +   S A L M G I +LNVS A AV LY 
Sbjct: 180 TNQLLYAEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 VVKQR 244


>gi|296313879|ref|ZP_06863820.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
           polysaccharea ATCC 43768]
 gi|296839525|gb|EFH23463.1| RNA methyltransferase, TrmH family, group 3 [Neisseria
           polysaccharea ATCC 43768]
          Length = 194

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 5/181 (2%)

Query: 105 VGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + K A HQG+            L   L+ +    LL++LD + DPHN+GA LR+A A   
Sbjct: 7   ISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLGACLRTADAMGV 66

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I  K  S   +A ++K A GA E +PYI ++NL   L+++  +G   IG        
Sbjct: 67  HAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWIIGTDMGGDAD 126

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D  A ++G EG G+R  T+E    +  + M G ++++NVS +A + L  T+  
Sbjct: 127 LYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIPMFGTVESMNVSVSAGMVLSETRRQ 186

Query: 280 F 280
            
Sbjct: 187 R 187


>gi|319941489|ref|ZP_08015817.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
 gi|319805109|gb|EFW01939.1| RNA methyltransferase TrmH [Sutterella wadsworthensis 3_1_45B]
          Length = 323

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 9/261 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWD 84
           R+       ++ +R  ++   + L G H V+A L      I Q+      ++   R   +
Sbjct: 49  RERSDRTERSRPARIRTEAGTVVLAGFHAVAARLKLDPESIQQVYVDPERRDKRMREMRE 108

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL-----SPTLDAVRNSQLLMVLD 139
                   V       +D +   +  HQG+A   A        +  LD + +  LL++LD
Sbjct: 109 KLFAAGVRVMNADAARLDGL-SPDVPHQGIAAIAAERENTLDFADLLDQITDRTLLLILD 167

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N GA LR+A A     +I  +  S   +   AK+A+GA E +P + ++NL  A+
Sbjct: 168 GVTDPRNFGACLRAADAAGVQAVIVPRDRSARMTPAAAKAAAGAAETVPVVSVTNLASAI 227

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++   G    G + ++   +    +    A +LGAEG+GLR  T+     +A + M G 
Sbjct: 228 MELRDNGVFVAGTAGETDTTIYDVAQARAFAWVLGAEGEGLRQLTRRRCDVLAAIPMVGS 287

Query: 260 IKALNVSNAAAVALYITQNHF 280
           +++LNVS A+ + L+ +    
Sbjct: 288 VESLNVSVASGICLFESLRQR 308


>gi|312886272|ref|ZP_07745886.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
           paludis DSM 18603]
 gi|311301297|gb|EFQ78352.1| RNA methyltransferase, TrmH family, group 3 [Mucilaginibacter
           paludis DSM 18603]
          Length = 269

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 110/250 (44%), Gaps = 14/250 (5%)

Query: 41  RHTSQPE-NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTV 96
           R+  + E N  ++G+  V  A+ +    I  L   +     L ++       +    + V
Sbjct: 15  RNEPKREYNQMVFGIRAVIEAIRSGKE-IESLFIQRGLGGELFYELKNLLNEYKIESQQV 73

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149
           P + ++++  K   HQG+    +P+    ++ +           L+++LD V D  N+GA
Sbjct: 74  PVEKLNRVTTK--NHQGVIAIISPITYYKIEDIIPMVFEKGEVPLILILDGVTDVRNVGA 131

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A       I+   + S   +    K+++GAL +IP  R S+L   ++ + S G Q 
Sbjct: 132 IARTAECAGVHAIVVPAKGSAQINPDTIKTSAGALYNIPVCRESSLLQTVKFLQSSGLQI 191

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  +  +   +         A+++G E  G+  +    A  +A + M G I++LNVS + 
Sbjct: 192 VCCTEKTTDFIYAPDYTLPTAIVMGGEDDGVSNEIIRIADHLAKIPMYGEIESLNVSVST 251

Query: 270 AVALYITQNH 279
            V LY     
Sbjct: 252 GVILYEAIRQ 261


>gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
           BAL3]
 gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
           BAL3]
          Length = 294

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 138/233 (59%), Gaps = 4/233 (1%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRK-IFQLLATKNALARLDWDANLPHPFPVKTV 96
           + +  +    + FL+G H V AAL NP+R+ + +LLAT    A ++    L H   ++ V
Sbjct: 48  RSADRSKSDADNFLWGRHPVLAALANPARRGMGRLLATAERAAEIE-QGQLAHGHKIEVV 106

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSA 154
             Q + +++   AVHQGLA +  PL   +L+ +      ++++LD + DP N+GAI RSA
Sbjct: 107 EVQALTRMLPAGAVHQGLAFKVQPLEGVSLEELAEPAQGVIVMLDQLTDPQNVGAIFRSA 166

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           +AF   GI+   R++P+ +  LAK+A GA E +P+ R++NL+ AL+++   G++ +GL  
Sbjct: 167 LAFGARGIVVQDRHAPALAGALAKAAVGATERLPHARVTNLSRALERLADLGWRAVGLDG 226

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             ++ LE+ +      L++G+EG G+R    E    +A + MPG  ++LNVSN
Sbjct: 227 TGEQTLEEALDRQPTVLVMGSEGDGIRRLVAEHCDVLAKIPMPGGFESLNVSN 279


>gi|110004177|emb|CAK98515.1| putative trna/rrna methyltransferase protein [Spiroplasma citri]
          Length = 244

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 9/237 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            E +++YG++ V  +L NP+ KI +L    +                 V       +  +
Sbjct: 2   QEYIYIYGINPVVESLLNPAVKINKLYLLPQGKNNDYYLKLAKSRQLKVVFCSAVEMTTL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFS 158
           V + + HQ L LE     + +L ++           L+VLD ++DPHN GAILR+   F+
Sbjct: 62  V-QTSKHQSLILEICKPQNYSLASITTKALQNKHPFLLVLDQISDPHNFGAILRTCDLFN 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK- 217
            DG+I   +     +A +AK+++GA  ++P  R++NLT+A++ +   GF     S ++K 
Sbjct: 121 VDGVIILDKRQVDINATVAKTSAGAFNYVPVCRVNNLTNAIEYLKKQGFWIYATSLNTKA 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + + +   +  I LI+G EG G+  K  + A    ++   G + +LNVS A+A+ +Y
Sbjct: 181 QNVSELKYDIPICLIVGNEGTGISAKLLKHADFNIYIPTAGHLDSLNVSVASAILIY 237


>gi|114570367|ref|YP_757047.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114340829|gb|ABI66109.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 289

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 132/253 (52%), Gaps = 15/253 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           +   R+  K   ++++S+     ++ +++G H V AA+ N  R+I +L  T+NA      
Sbjct: 21  KTPMRNTSKRPDYSRRSKPAGTGDSGWIWGRHAVLAAVANKRREILELKVTRNAA----- 75

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHV 141
             +LP     + V P+ ID  + + AVHQG A     L S +++ V +     L+VLD +
Sbjct: 76  -RDLPDGTDHQQVEPKVIDNALPEGAVHQGFAARARALPSESVNGVIDPTHGALLVLDQI 134

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DPHN+GA+LRSA AF    +I   R +P     + KSA GA E + ++R++N+ D L +
Sbjct: 135 TDPHNVGAVLRSAAAFGIRAVIMQDRKAPPLFGTVCKSAVGAAERVAHVRVTNIADTLLE 194

Query: 202 MHSWGFQTIGLSSDSKKPLEQEI-------KNDKIALILGAEGKGLRPKTQETATSMAHL 254
               G   +GL+ +++  L   +           + L++G+E KGLR +  E    +  +
Sbjct: 195 FSKAGRHVLGLAGEAELDLATALAAPDGKGWGPGLVLVMGSEDKGLRQRVAECCDQLVRI 254

Query: 255 HMPGIIKALNVSN 267
            M   +++LNVSN
Sbjct: 255 PMTDTVESLNVSN 267


>gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
           F0304]
 gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
           F0304]
          Length = 326

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 26/294 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++         L R      ++ +  + ++ TS  ++  + G + V  AL   
Sbjct: 25  TPKAEDRVYHKAYRAKKALERRKAADPRLAARRRVAKFTSDSDDFVI-GRNAVLEALKAH 83

Query: 65  -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
               +  +L       R      L       +       +++I  +   HQG+ ++ AP 
Sbjct: 84  VPSSVLYILNRIEHDDRTREIIRLAGLEGLKILEADRLEMNRIA-RSVNHQGVIIKVAPY 142

Query: 122 LSPTLDAVRNS--------------------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              +L  + +                      L + LD V DP N+GA++RSA AF   G
Sbjct: 143 HYKSLQELVDRAEAKAQALGSASAKAKALAQPLFIALDGVTDPQNLGAVIRSAAAFGASG 202

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  +R S S +A   K ++GA  H+P  R+ NLT A+  +   GF +IGL       + 
Sbjct: 203 VILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIDSLKERGFYSIGLDGGGTAQVG 262

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               + D + ++LG+EGKG+    +E   ++  + M  ++++LN S AA +AL+
Sbjct: 263 YSGFETDPLIVVLGSEGKGISRLVREQCDAIVSIPMTSLVESLNASVAAGIALF 316


>gi|227495628|ref|ZP_03925944.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226830860|gb|EEH63243.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 322

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 128/290 (44%), Gaps = 15/290 (5%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALN 62
           + K  ++++    +H  K+ +   + KK Q+   ++R + +    N  + G + V  A++
Sbjct: 35  TPKAEDRVYHA--AHKRKVEKEIAEKKKAQAEAHRTRTSIKIAAGNELIVGRNAVFEAVD 92

Query: 63  NPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                I   LA      R+            PV  V    ++   G E+ HQ + +E   
Sbjct: 93  AGIDIIRVFLAGNALDERIGKVVRTATALGAPVLEVTKMDLENASG-ESAHQSIGIEVPE 151

Query: 121 LLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
               +   +           L++ LD V DPHN+GA+LRS  AF   G++ ++R S S +
Sbjct: 152 YDYCSAQDLLERTKENAQIPLIVALDQVTDPHNLGAVLRSGGAFGITGVLISERRSASVN 211

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALI 232
           A   K ++GA   +P  R +NL  AL ++   G   +GL       L         + ++
Sbjct: 212 AAAWKVSAGAAARVPVARETNLVRALGELKEAGCFVVGLDGGGDVSLRDLDLATGPLVVV 271

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GAEGKGL    +ET   +  + +   +++LN + A  +ALY   +  A+
Sbjct: 272 TGAEGKGLSRLVRETCDQIVSIPISSAVESLNAAVATGIALYEVASKRAE 321


>gi|119713688|gb|ABL97738.1| rRNA methyltransferase [uncultured marine bacterium EB0_41B09]
          Length = 246

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 11/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTV--PPQTIDKIVGK 107
           +YG H++++ +      + ++   +     R++    +     VK        +D +V  
Sbjct: 7   IYGFHSITSQIRLDPLVVKEIFIDEARSDGRVNDLMKIIKANEVKFHLSTKDRLDGMVSG 66

Query: 108 EAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+        +  +       +      L ++LD V DP N+GA  R A A   D
Sbjct: 67  NK-HQGVVALVREAQNKYVTVEDIIEENYDKPLLFLILDGVVDPQNLGACFRVADAMGVD 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  +   +A + K A G  E +P++ ++NL   ++ + +      G   ++ K L
Sbjct: 126 ALICPKDNAVGLNATVRKVACGGAESVPFVVVTNLARTIRYLKNSNVFVYGTDDNANKSL 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++      IAL++G+EGKG+R  T E    +  + M G +++LNVS A+ + LY      
Sbjct: 186 QKTNFKGSIALVMGSEGKGMRRLTNELCDDIFSIPMMGQVESLNVSVASGICLYEINRQR 245

Query: 281 A 281
           +
Sbjct: 246 S 246


>gi|225387934|ref|ZP_03757698.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
           DSM 15981]
 gi|225045977|gb|EEG56223.1| hypothetical protein CLOSTASPAR_01706 [Clostridium asparagiforme
           DSM 15981]
          Length = 246

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 11/243 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A        K+F L   ++   R        H   V  V  + +D+I
Sbjct: 4   EELTIEGRNAVLEAYRAGKTIDKLFVLDGCQDGPVRTIVREAKKHDTIVNFVAKERLDQI 63

Query: 105 VGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +   HQG+    A         L    +       L++LD + DPHN+GAI+R+A   
Sbjct: 64  -SETGKHQGVIAYAAAYEYAEVEDLLKLAEEKGEPPFLILLDGIEDPHNLGAIIRTANLA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR +   +A +AK+++GAL + P  +++NLT  ++ +   G   +      +
Sbjct: 123 GAHGVIIPKRRAVGLTATVAKTSAGALNYTPVAKVTNLTATMEDLKKKGMWFVCADMGGE 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + +      I L++G EG+G+    +E    +A + M G I +LN S AA V  Y   
Sbjct: 183 -LMYRLNLKGPIGLVIGNEGEGVGKLVKEHCDMVASIPMKGDIDSLNASVAAGVLAYEIV 241

Query: 278 NHF 280
              
Sbjct: 242 RQR 244


>gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 239

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 13/239 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGK 107
           ++YG + +  AL N  +K+ ++ A       +     +       +     + +  +VG 
Sbjct: 3   YIYGRNAIIEALKN--KKVDKIYAAPGLKGSIGKIYAMAKEQKIVIVEADKKKLKDMVG- 59

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E  HQG+   ++      ++ +         +  L++LD + DP+N GAI RSA AF   
Sbjct: 60  EVNHQGVVALSSSFEYSQVEDIIAYAKSRGENIKLIMLDEIEDPYNFGAIARSAEAFGFH 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  KR S   +  + KS++GA+E I    ++NL+  + ++        G + +   P+
Sbjct: 120 GIIIPKRRSALVNDAVYKSSAGAIESIKVAVVNNLSQTISELKENSIWVYGATMEG-DPI 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +     I +++G EGKGL    ++    +  + M G I +LN S A  + LY     
Sbjct: 179 CDQDLVGNICIVIGNEGKGLGHAVEKNCDELISIPMLGSINSLNASVACGIILYEVTRQ 237


>gi|217967856|ref|YP_002353362.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
           DSM 6724]
 gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
           DSM 6724]
          Length = 239

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 119/238 (50%), Gaps = 11/238 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDWDANLPHP--FPVKTVPPQTIDK 103
              +YG ++V  AL +    + ++   +      + +    L      P+K V    I+K
Sbjct: 2   EDIIYGKNSVLEALKSEI-PLNKIYIARGIHFDNKFNEILKLAKEKSIPIKYVERSFIEK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           +V  +   QG+    + +       +     N  +++VLDH+ DP+N+GAI R++     
Sbjct: 61  MV--DGNSQGVLAILSSVPYKDWKELEKSLDNKSIIVVLDHIQDPYNLGAIARTSEFAGV 118

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+  K  S   ++V  K+++GAL +IP IR+SN+ + L+++   G+  +G   +++  
Sbjct: 119 SAIVIPKARSAGITSVSFKTSAGALSYIPVIRVSNIANFLRELKGKGWFIVGADLNTENL 178

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +   N  +AL++G+EG+GL    +E+   +  +   G +++LNVS A  + LY  +
Sbjct: 179 YNKVEYNFPLALVVGSEGEGLHRIVRESCDLLVKIPSYGKVESLNVSVAVGIILYKIR 236


>gi|312131975|ref|YP_003999315.1| RNA methyltransferase, trmh family, group 3 [Leadbetterella
           byssophila DSM 17132]
 gi|311908521|gb|ADQ18962.1| RNA methyltransferase, TrmH family, group 3 [Leadbetterella
           byssophila DSM 17132]
          Length = 263

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 10/262 (3%)

Query: 29  DYKKMQSFNQKSRHTSQP-ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +K     +  +H ++P +  F++GV++V   L +       LL  +            
Sbjct: 2   ENRKGSGVKKFHKHINRPNKEDFVFGVNSVIETLKSEQEIDKILLLKEMKHVEEIETLAR 61

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDH 140
               PV+ VP + ++++  K   HQG     + +    L  V         S L+++LD 
Sbjct: 62  NRGIPVQKVPMEKLNRVTMK--NHQGAIAFVSAVNFAILSNVVTSIFESGESPLVLILDR 119

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N GAI RSA       ++   R S   +    K++SGAL  IP  R ++L + ++
Sbjct: 120 ITDVRNFGAICRSAECSGVHAVVVPARGSAQINGDAMKTSSGALNFIPVCRETDLINTVK 179

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + + GFQ I  +      +     +   A+I+G+E  G+     + +   A + + G +
Sbjct: 180 YLKNSGFQIISCTEKGNDLVYDADYSLPTAIIMGSEEDGISDALIDLSDFKAQIPLKGKV 239

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNVS AA V L+       K
Sbjct: 240 ESLNVSVAAGVILFEAVRQKMK 261


>gi|300770796|ref|ZP_07080674.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762353|gb|EFK59171.1| RNA methyltransferase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 259

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 15/262 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPH 89
           MQ+F +  R   +  N  ++G+  V  A+++    I  L   +     L  +       H
Sbjct: 1   MQNFQRHDRSEKRESNQMVFGIRAVIEAIDSGKE-IESLFVQRGLGGSLFLELKSLIKEH 59

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVN 142
               + VP + +++I  K   HQG+    +P+    ++ +         + L+++LD V 
Sbjct: 60  EIGFQQVPIEKLNRITRK--NHQGVIAVISPITYQKIEDLIPEIYEKGETPLILMLDGVT 117

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GAI R+A       II  K+ S   +    K+++GAL  IP  R  NL    + +
Sbjct: 118 DVRNLGAIARTAECSGVHAIIVPKKGSAEINPDAIKTSAGALYKIPVCRHDNLGKVGKFL 177

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G Q +  +  +++ +          +I+GAE  G+       +  +A + M G I +
Sbjct: 178 IDSGIQLVVSTEKTEESIYSVDYTAPTCIIMGAEDIGVSDDLIRISDHLAKIPMFGEIGS 237

Query: 263 LNVSNAAAVALYI--TQNHFAK 282
           LNVS +A V LY    Q    K
Sbjct: 238 LNVSVSAGVVLYEAIRQRQITK 259


>gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex]
          Length = 250

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 125/220 (56%), Gaps = 5/220 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            +L+G H+V AAL N  R+  QLL T++AL  ++           K +P   +++++  +
Sbjct: 18  FWLWGTHSVIAALENTQRECHQLLCTRDALKDVEPFLAKRPKLSPKILPRDELNRLL-PQ 76

Query: 109 AVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            VHQG+AL+ +PL    L+        ++ L++LD + DP N+GAILRSA AF  DG++ 
Sbjct: 77  TVHQGVALQVSPLPELFLNTFLARSPAAKRLVILDQITDPQNVGAILRSACAFGFDGVLM 136

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T+R+SP    V+ KSASGALE IP +  +N+   L+ + + GF   GLS +   PL Q  
Sbjct: 137 TERHSPPLEGVVGKSASGALEKIPLLMTANVAQGLRLLKTEGFWCWGLSEEGTLPLSQLP 196

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               +AL+LGAEGKGLRP T +    +  L        LN
Sbjct: 197 CEGSLALVLGAEGKGLRPLTAQLCDGLVRLPTSPDFPTLN 236


>gi|78187470|ref|YP_375513.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
 gi|78167372|gb|ABB24470.1| RNA methyltransferase TrmH, group 3 [Chlorobium luteolum DSM 273]
          Length = 248

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 114/242 (47%), Gaps = 8/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           PEN  +YG + V   L      + ++    N       +  +             ++K+ 
Sbjct: 6   PEN-LVYGRNAVLELLREKPESVEKIYFQFNTSHPKLKEIIITARRQKIVTGKARLEKLS 64

Query: 106 --GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                  HQG+A   + +   T++ +      ++ LL+VL  ++DPHNIGAI+R+A A +
Sbjct: 65  LIAGTTKHQGVAALISTVSYYTVEELLAAPRNSAPLLVVLQGLDDPHNIGAIIRTAEAVA 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            DG++  +      +AV+ K+++GAL H+   ++ +L   L+ +H  G Q +    +++ 
Sbjct: 125 ADGVVLVEGKGAPVNAVVHKASAGALSHMRVAKVKSLVRCLELLHREGIQVLATDMEAET 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                      A++LGAEG GL P+  E    +  + M G +++LNVS +A V LY    
Sbjct: 185 NYTDADFRKATAIVLGAEGSGLAPEAMEFCDRVVRIPMAGCVESLNVSVSAGVMLYEAMR 244

Query: 279 HF 280
             
Sbjct: 245 QR 246


>gi|226324507|ref|ZP_03800025.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
 gi|225206955|gb|EEG89309.1| hypothetical protein COPCOM_02290 [Coprococcus comes ATCC 27758]
          Length = 249

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  A  +  P  K++ L   ++   R        H   +  V  + +++I  + 
Sbjct: 11  IEGRNAVMEAFRSGKPIDKVYILDGCQDGPIRSIVREAKKHDTILNFVTKERLNQI-SET 69

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+  + A      ++ +            L++LD++ DPHN+GAI+R+A      G
Sbjct: 70  GRHQGVIAQAAAYEYAQVEDMLELAKQKGEDPFLILLDNIEDPHNLGAIIRTANLAGAHG 129

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K  +   +A +AK+++GAL + P  +++NL   ++++   G   +    D    + 
Sbjct: 130 VIIPKHRAAGLTATVAKTSAGALNYTPVAKVTNLVKTMEELKEKGLWFVCADMDGDV-MY 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +      I L++G EG+G+    +ET    A + M G I +LN S AA V  Y      
Sbjct: 189 RVNLKGPIGLVIGNEGEGVGRLVKETCDMTAAIPMKGDIDSLNASVAAGVLAYEIVRQR 247


>gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
           Nor1]
 gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
           Nor1]
          Length = 270

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 8/260 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLD 82
           N++  KK+ S  QK ++  +     + G+  V  A  +  R        K A A   +  
Sbjct: 9   NNQVIKKVASLKQK-KYRDEYNLFVVEGIRLVEEAAGSTWRPAMCFYTEKAAAAPRVQAT 67

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDH 140
            +        +  V      KI   E   QG+   +E        L +  + +L++VLD+
Sbjct: 68  LEILAAKGCRIFPVADNVYAKITDTEQ-PQGILCVMEKKRYTFDDLQS-SDRELIVVLDN 125

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G ++R+A A  C G+I TK  +   S    ++  G+L H+P I      +   
Sbjct: 126 VQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMGSLFHLPVITGVAEQEVAA 185

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   G + +  + DS            +A++ G EG G+     E A    ++ + G  
Sbjct: 186 FLERQGIRLLATALDSSSLYHDVDLRSPVAIVFGNEGAGVSKVILEKADERLYIPLYGRA 245

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AAAV LY  +   
Sbjct: 246 ESLNVAVAAAVILYEARRQR 265


>gi|260425256|ref|ZP_05779236.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
 gi|260423196|gb|EEX16446.1| RNA methyltransferase, TrmH family, group 3 [Citreicella sp. SE45]
          Length = 278

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++S+     E ++L+G+H V  AL NP R+  +L+ T NA A+L+ DA        +  
Sbjct: 30  KEQSKKARAAETVWLFGLHAVRDALMNPRREKLRLIVTLNAQAKLE-DAIAAGGIEPEIH 88

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE  PL    L+ V          L++LD V DPHN+GAIL
Sbjct: 89  DPRKFGAPLDPQSVHQGAALEVKPLDWGRLEDVAMGDGETPPRLVLLDRVTDPHNVGAIL 148

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I T+ ++  E+  LAK+ASGALE  PY+R  NL D ++ +   G+  +G
Sbjct: 149 RSAEVFGAQAVIGTQHHAAPETGALAKTASGALERQPYLRERNLADTIRALQEMGYLVLG 208

Query: 212 LSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L  ++   +E  ++  +   +AL+LGAEG GLR KT+ET   +  +       +LNVSN
Sbjct: 209 LDGEADTTIETALEGMRDRAVALVLGAEGPGLREKTKETVDRLVRIEFARSFGSLNVSN 267


>gi|313158993|gb|EFR58370.1| RNA methyltransferase, TrmH family, group 3 [Alistipes sp. HGB5]
          Length = 243

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 12/240 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+  V+ A+    ++I +L   K A  +L     D    H   V+ VP + ++++  
Sbjct: 4   IIFGIRPVAEAIE-AGKQIEKLYIRKGAEGQLMSELRDLCFRHKVRVQEVPVEKLNRLT- 61

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  + + +    L  +        + L+++ D V D  N GAI RSA      
Sbjct: 62  -RGNHQGVVAQISAIEYVGLADILERVPEDETPLVVIFDGVTDVRNFGAIARSAECAGAH 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+IT  + S   +A   +S++GAL  IP  R+ ++ + ++ + + GFQ +  +  S+K L
Sbjct: 121 GLITPLKNSAPVNAEAIRSSAGALTAIPVCRVGSIRNTVKLLQTEGFQIVAATEKSRKLL 180

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    AL++GAE  G+  +  +       + + G I++LNVS AAAV L+      
Sbjct: 181 YDADFRKPTALVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEAVRQR 240


>gi|229828825|ref|ZP_04454894.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
           14600]
 gi|229791988|gb|EEP28102.1| hypothetical protein GCWU000342_00908 [Shuttleworthia satelles DSM
           14600]
          Length = 246

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 11/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           +  +  + G + V  AL +  P  ++F L  + +   R            +  V  + +D
Sbjct: 2   RDASTVIEGRNAVLEALRSGKPVDRVFILAKSYDGPIRTIVREAKKRDCILSFVDKKRLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  +   HQG     A     T++ +            L +LD++ DPHN+GAI+R+A 
Sbjct: 62  EI-SETGKHQGAIAYIAAYRYSTVEDILALARKRGEDPFLFLLDNIEDPHNLGAIIRTAN 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+I  K  +   +A +AK+++GA+ + P  +++NL+  ++++   G   +    D
Sbjct: 121 LAGAHGVIIPKNRAAGLTATVAKASAGAINYTPVAKVTNLSRTMEELKKEGLWFVCADMD 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  +        I L++G EG G+    ++     A + M G I +LN S AA V  Y 
Sbjct: 181 GQV-MYDLNLTGPIGLVIGNEGSGVGDLVRKHCDLFAAIPMAGEIDSLNASVAAGVLAYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 LVRQR 244


>gi|255036422|ref|YP_003087043.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
           DSM 18053]
 gi|254949178|gb|ACT93878.1| RNA methyltransferase, TrmH family, group 3 [Dyadobacter fermentans
           DSM 18053]
          Length = 256

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 10/258 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           + + +  +     Q +   ++G  +V   L +    I +L   +                
Sbjct: 2   EKRKYTVRKPAPKQSQADMVFGTQSVLETLRSGKE-IERLFIQREFGLAEIEKLAKELGV 60

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDP 144
           P + VP + ++++  K   HQG+    +P+    L  V         + LL++LD V D 
Sbjct: 61  PYQRVPVEKLNRVTRK--NHQGVIAFVSPIQYMPLHNVLTQVYEDGKTPLLLLLDRVTDV 118

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N GAI R+A       II   +     +A   K++SGAL  +P  R  NL + L  + +
Sbjct: 119 RNFGAIARTAECAGVQAIIVPTKGGAQINADAMKTSSGALNFLPICREPNLYETLTYLRN 178

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G Q I  +  + K L          +I+G+E  G+  +  + A S A + + G +++LN
Sbjct: 179 SGLQIIACTEKTDKSLYDIDFTVPTVIIMGSEEDGISKEFIDLADSGARIPLAGQVESLN 238

Query: 265 VSNAAAVALYITQNHFAK 282
           VS A++V LY       K
Sbjct: 239 VSVASSVVLYEAVRQRIK 256


>gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4]
          Length = 247

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 10/240 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            +   +     + G H +  AL      + +LL  ++      WD N+P      T+  +
Sbjct: 7   KKERIKTNTFMIEGFHLIEEALKVDG-VVEELLVVEDITLPKSWDVNVPM-----TLLKR 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            I+K +      QG+      L     +        ++LD V DP NIG ++R+A A   
Sbjct: 61  GIEKELTDTEQPQGVFAICRQLNQ---NVELEGTAYLLLDGVQDPGNIGTMIRTADAAGF 117

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           DG+I  +      +  + +SA G+  H+P +   NL + +Q++H  GF   G S  + + 
Sbjct: 118 DGVIMGEGTVDPYNPKVLRSAQGSHFHLPIVN-KNLVEVVQELHDNGFDVFGTSLQNGED 176

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + +   K ALI+G EG G++       T   ++ + G  ++LNV+ AA V +Y  Q  
Sbjct: 177 YREVLFPAKFALIMGNEGNGMQETLLHATTKNLYIPIFGKSESLNVAVAAGVLMYWGQQQ 236


>gi|256819567|ref|YP_003140846.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           ochracea DSM 7271]
 gi|256581150|gb|ACU92285.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           ochracea DSM 7271]
          Length = 244

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  AL       K+F     +  L R           PV+ VP + ++++  K 
Sbjct: 7   IYGIRALIEALKAGKTIDKVFLQKGLQGVLFRELMPLLQEAQVPVQYVPVEKLNRLTKK- 65

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+     + +         + L +VLDH++D  N GAI+R+A      G
Sbjct: 66  -NHQGVVANLSPVDYHNFEDLVISVTESGATPLFLVLDHLSDVRNFGAIIRTAECTGVSG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR S S +A   K+++GA+  +P  ++ NL DA+  +   G + +  +  + + L 
Sbjct: 125 IIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEKTSQLLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E      A+++GAE  G+ P   +   S A L M G I +LNVS A AV LY      
Sbjct: 185 TEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243


>gi|187934593|ref|YP_001886663.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722746|gb|ACD23967.1| RNA methyltransferase, TrmH family [Clostridium botulinum B str.
           Eklund 17B]
          Length = 260

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            + +  YK+ +   ++ ++ ++     + G   V  A+   S  I  L+ T+    +LD 
Sbjct: 6   SKENTIYKEAKKLKER-KNRNKINKYVIEGFRLVDEAIK-ASLDIDYLILTQVGYEKLDN 63

Query: 83  -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             + +      V  +       +   E   QG+      + +  LD        +  D V
Sbjct: 64  YINKDKIEKQKVYCITDNLFKDLTSTE-NPQGIIAIVN-MENKNLDF--QGDFYLFCDKV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A   +GII +K      +    +S  G+L ++P     N    ++ 
Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIILSKGTVDIYNEKTIRSTMGSLFYMPIYYDDNEFSLIKS 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF+ I  S +S K   +E    K  L +G EG G+  +  + A     + MPG  +
Sbjct: 180 LKKDGFKLIVTSLESSKDFFKEDLKGKTILTVGNEGNGVSNEVLDLADRRVKIPMPGGAE 239

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A ++ +Y     
Sbjct: 240 SLNVAIATSIIIYEKIRQ 257


>gi|22298586|ref|NP_681833.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22294766|dbj|BAC08595.1| tll1042 [Thermosynechococcus elongatus BP-1]
          Length = 295

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 128/272 (47%), Gaps = 22/272 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPEN----------LFLYGVHTVSAALNNPSRKIFQLLA 73
           ++N    K+     +++      +             LYG H V +AL +  R   ++  
Sbjct: 9   KKNRPPAKRPPRLQRRTPAQPLQKAPPTAPAADAPELLYGRHAVLSALESG-RPCNRIWV 67

Query: 74  TK----NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                 +       +        + TV P+ +D++  +   HQG+A++ A     +L+ +
Sbjct: 68  IPSLRYDPRFHQRLNEAKQQGAIIDTVTPERLDQLC-QRGRHQGIAIQVAAYNYWSLEDL 126

Query: 130 R------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                  N  +L+  D + DP N+GA++R+A A    G+I  +R +   +A +AK+A+GA
Sbjct: 127 LAKAATVNQPVLLAADGITDPQNLGAMIRTAEALGMQGVIIPQRRAVGITATVAKAAAGA 186

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           LE++P  R+ NL  AL+ + + G+   GLS     PL +   +     ++G+EG+G+  +
Sbjct: 187 LEYLPVARVINLNQALETLKAAGYWIYGLSEHGAVPLPKITFDRPTVFVVGSEGEGISLQ 246

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           TQ+    +  + + G   +LN S A  +ALY 
Sbjct: 247 TQKHCDEIVAIPLAGRTNSLNASVAVGIALYE 278


>gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK187]
 gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK137]
 gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK187]
 gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes SK137]
 gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL013PA1]
 gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL074PA1]
 gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA1]
 gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA2]
 gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL083PA1]
 gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL025PA1]
 gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL059PA1]
 gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL063PA2]
 gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL007PA1]
 gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL056PA1]
 gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL086PA1]
 gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA4]
 gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA1]
 gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA3]
 gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL067PA1]
 gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL027PA1]
 gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA1]
 gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL082PA1]
 gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA1]
 gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL053PA1]
 gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL045PA1]
 gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA1]
 gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL053PA2]
 gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL078PA1]
 gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL038PA1]
 gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL059PA2]
 gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL046PA1]
 gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL030PA2]
 gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL096PA2]
 gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL097PA1]
 gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL043PA1]
 gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL043PA2]
 gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA3]
 gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL083PA2]
 gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL092PA1]
 gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA1]
 gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL025PA2]
 gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL099PA1]
          Length = 318

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 21/291 (7%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-------RHTSQPENLFLYGVHTVSA 59
           +  + +     +  A+ R  H+ YK  Q    ++       R ++     ++ G + V  
Sbjct: 24  RGRKALKGRGPTPKAEDRVYHKAYKAKQEKLARAAARKPANRQSTGAGPEWVIGRNPVLE 83

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           AL +    +      + A       A L     H   +       +D++ G  + HQG+A
Sbjct: 84  AL-HAGLPVRTAYVAEGAEHDSRLRAILTFCADHGIALMQATRGELDRMTG-GSNHQGVA 141

Query: 116 LETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           L        T+  +  +        L++ LD V DP N+GAI+RSA AF   G++   R 
Sbjct: 142 LRLPEYEYATVGDLIAAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRR 201

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KND 227
           S S +A   K+++GA   IP    +NL  AL K  + G+  +GL+ ++          + 
Sbjct: 202 SASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGLAGEADSDFASAPGFDG 261

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +++G+EG GL   T+++   +A + +   +++LN S AA++ALY    
Sbjct: 262 PLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAAR 312


>gi|259416208|ref|ZP_05740128.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
           TrichCH4B]
 gi|259347647|gb|EEW59424.1| RNA methyltransferase, TrmH family, group 3 [Silicibacter sp.
           TrichCH4B]
          Length = 262

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 91/235 (38%), Positives = 136/235 (57%), Gaps = 7/235 (2%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++L+G+H V  AL NP R+  +L+ T NA  +L+ DA        + V P+     +  
Sbjct: 26  TVWLFGLHAVRDALLNPKREKLRLVVTLNAHNKLE-DAITTSGITPEVVDPRKFSVPIDP 84

Query: 108 EAVHQGLALETAPLLSPTLDA---VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            +VHQG ALE  PL    LD          +++LD V DPHN+GAILRSA       +I 
Sbjct: 85  GSVHQGAALEVKPLNWGGLDENCIGAEIPRVILLDRVTDPHNVGAILRSAEVLGASAVIG 144

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T+ +S  E+  LAK+ASGALE  PY+R+ NL+D +  +   G+  +GL  ++++ +E+ +
Sbjct: 145 TRHHSAPETGALAKTASGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEAV 204

Query: 225 KN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + IAL+LGAEG GLR KT+ET   +  +       +LNVSNAAA++LY +
Sbjct: 205 AGRTKEPIALVLGAEGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYAS 259


>gi|228989300|ref|ZP_04149291.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
 gi|228995483|ref|ZP_04155151.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|228764212|gb|EEM13091.1| tRNA/rRNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|228770378|gb|EEM18951.1| tRNA/rRNA methyltransferase [Bacillus pseudomycoides DSM 12442]
          Length = 212

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132
           ++       +   ++  P + +D++V  E  HQG+  + A      L+ +          
Sbjct: 2   QIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFEVAAKRNED 59

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R+
Sbjct: 60  PFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARV 119

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +NL+  + ++   G    G  +  K        N  I L++G+EGKG+     E    + 
Sbjct: 120 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLI 179

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
           HL M G + +LN S AA++ +Y    
Sbjct: 180 HLPMVGKVTSLNASVAASLLMYEVYR 205


>gi|21674445|ref|NP_662510.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647630|gb|AAM72852.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 257

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 9/246 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQ 99
             +P    +YG + V   L +    + ++     T +   +           P      +
Sbjct: 11  AQKPREQVVYGRNAVIELLQSKPESVEKIYLQFNTSHPKLKEIVITARRLRIPCGKARME 70

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSA 154
            +  + G     QG+      +   TL+ V      +S LL++L  + DPHN+GAI+R+A
Sbjct: 71  KLTLLSGTAKN-QGVCALLTSVTFYTLNEVLAAPRNSSPLLVILQGLEDPHNVGAIIRTA 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A + D +I  +      SA + K+++GAL H+   ++ ++  AL  +   GF  +    
Sbjct: 130 EAVAADAVIMIEGKGAPISATVHKASAGALSHMRVCKVKSVVKALDLLRERGFSIVAADM 189

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +++             L++GAEG GL  +T+     +  + M G +++LNVS AA V LY
Sbjct: 190 EAEHNHTDIDWKRPTVLVMGAEGSGLGSETRNRCDQIVRIPMAGCVESLNVSVAAGVMLY 249

Query: 275 ITQNHF 280
                 
Sbjct: 250 EAMRQR 255


>gi|229159265|ref|ZP_04287289.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
 gi|228624157|gb|EEK80959.1| tRNA/rRNA methyltransferase [Bacillus cereus R309803]
          Length = 212

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132
           ++       +   ++  P + +D++V  E  HQG+  + A      L+ +          
Sbjct: 2   QIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNED 59

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R+
Sbjct: 60  PFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARV 119

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +NL+  + ++   G    G  +  K        N  I L++G+EGKG+     E    + 
Sbjct: 120 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLI 179

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            L M G + +LN S AA++ +Y    
Sbjct: 180 TLPMVGKVTSLNASVAASLLMYEVYR 205


>gi|282860521|ref|ZP_06269587.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
 gi|282564257|gb|EFB69793.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp. ACTE]
          Length = 318

 Score =  225 bits (574), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 71/280 (25%), Positives = 121/280 (43%), Gaps = 13/280 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF-- 69
           S +  H      N +  +         R  ++  +  + G + V  AL +  P+  ++  
Sbjct: 40  SARKGHKKNRVANAQARQAAARRPAPRRGGAKGTSEMVVGRNPVYEALRDGVPATTLYVQ 99

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           Q +     +      A       +   P   +D++  K   HQGL L+  P      + +
Sbjct: 100 QYIDNDERVRECLQLAGERGNINLMEAPRPELDRMT-KGLNHQGLVLQVPPYEYAHPEDL 158

Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   KS++G
Sbjct: 159 TAAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAG 218

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLR 241
                P  R++NLT AL+     G   +GL++D +  +E  E  +  + +++G+EGKGL 
Sbjct: 219 TAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEQLSGPVVIVIGSEGKGLG 278

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ET      + MPG  ++LN   AA + LY      A
Sbjct: 279 RLVGETCDYRVRISMPGGAESLNAGVAAGIVLYEVARRRA 318


>gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL087PA2]
 gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL046PA2]
 gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA1]
 gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA2]
 gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL063PA1]
 gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL036PA3]
 gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA2]
 gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL072PA2]
 gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA2]
 gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL005PA3]
 gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL027PA2]
 gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL002PA3]
 gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL072PA1]
 gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL096PA3]
 gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL013PA2]
 gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL020PA1]
 gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266]
          Length = 318

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 21/291 (7%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKS-------RHTSQPENLFLYGVHTVSA 59
           +  + +     +  A+ R  H+ YK  Q    ++       R ++     ++ G + V  
Sbjct: 24  RGRKALKGRGPTPKAEDRVYHKAYKAKQEKLARAAARKPANRQSTGAGPEWVIGRNPVLE 83

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           AL +    +      + A       A L     H   +       +D++ G  + HQG+A
Sbjct: 84  AL-HAGLPVRTAYVAEGAEHDSRLRAILTFCADHGIALMQATRGELDRMTG-GSNHQGVA 141

Query: 116 LETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           L        T+  +  +        L++ LD V DP N+GAI+RSA AF   G++   R 
Sbjct: 142 LRLPEYEYATVGDLIAAGTQTYRGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRR 201

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KND 227
           S S +A   K+++GA   IP    +NL  AL K  + G+  +GL+ ++          + 
Sbjct: 202 SASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMIVGLAGEADSDFASAPGFDG 261

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +++G+EG GL   T+++   +A + +   +++LN S AA++ALY    
Sbjct: 262 PLVIVVGSEGDGLARLTRQSCDVLASIPISSDVESLNASVAASIALYEAAR 312


>gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 318

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 114/258 (44%), Gaps = 15/258 (5%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFP 92
            +  R +      ++ G + V   L    P+  ++ ++ T +A  R+    +        
Sbjct: 63  RRTHRKSEDGGPEYVVGRNPVVECLRAEVPATALY-VMTTIDADERVKEAVHTAGDRGIS 121

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
           +  V    +D++     +HQGLAL+         + +        ++ LL+ LD++ DP 
Sbjct: 122 ILEVGKPELDRM-SPNGLHQGLALQVPEYQYAHPEDLMADALAGSSAPLLVALDNITDPR 180

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA++RS  AF   G++  +R S   +AV  ++++GA   +P     NL   L      
Sbjct: 181 NLGAVIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGAAARLPVATTPNLNRTLLDWAKK 240

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +GL +     L+         +++G+EGKGL    +E   S+  + +   +++LN 
Sbjct: 241 GAQIVGLDAGGDVSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIPIASDVESLNA 300

Query: 266 SNAAAVAL--YITQNHFA 281
           S AA V L  +  Q    
Sbjct: 301 SVAAGVVLSEFARQRRIG 318


>gi|83644548|ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396]
 gi|83632591|gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396]
          Length = 238

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 111/236 (47%), Gaps = 12/236 (5%)

Query: 55  HTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVH 111
           H V A L     KI +LL ++     RL   A L      P   V    +DK    +  H
Sbjct: 2   HAVRALLQKHPGKIDRLLLSEQRHDHRLQEIAQLAQERRVPFSQVGKSALDKAA--DGAH 59

Query: 112 QGLALETAPLL-------SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           QG+                  L+ +    LL+VLD V DPHN+GA LRSA A     +I 
Sbjct: 60  QGVVAYLKADRMSNETDLEELLEKLEEPALLLVLDGVTDPHNLGACLRSANAAGVHAVIV 119

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K  S   +A   K A GA E  P IR++NL   L+ + ++G   +G + ++++ L Q  
Sbjct: 120 PKDKSAPLNAAARKVACGAAEVTPLIRVTNLARTLKHIQTYGVWLVGAAGEAEQSLYQAD 179

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +A+++GAE KG+R  T+E   S+ ++ M G + +LNVS A  V L+      
Sbjct: 180 LKGSVAIVMGAEDKGMRRLTRENCDSLVNIPMLGEVSSLNVSVATGVCLFEAVRQR 235


>gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
 gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
          Length = 252

 Score =  224 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 117/268 (43%), Gaps = 19/268 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S+K+          + +KK+ +   + +         + G H V  A+ N    + 
Sbjct: 2   KQIDSVKNPQV-------KAWKKLHNKKDRDKQ----GLFMVEGFHLVEEAIKN-KDCVK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+  ++      W+ +      +  V    I K++      QG+        +   + +
Sbjct: 50  ELIIRESIEVPAQWNID---GIEITVVNEAII-KLLSDTETPQGIIAVC--FQTKHAEII 103

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q +++LD V DP N+G I+R+A A   + II  +      +  + +S  GA+ H+P 
Sbjct: 104 HTAQKVLLLDAVQDPGNLGTIIRTADAAGVEAIIVGEGSVDVYNPKVVRSTQGAIFHLPI 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  +L + +  +        G S  + K       +++ AL++G EG G+  K  E   
Sbjct: 164 VK-GDLLEMISLLKEREIAVYGTSLQNGKVYTCVKPSNEFALVVGNEGNGVSEKVLEQTD 222

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ A+ + LY  +
Sbjct: 223 QNLYIPIYGKSESLNVAIASGILLYYLR 250


>gi|94676839|ref|YP_589003.1| RNA methyltransferase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219989|gb|ABF14148.1| RNA methyltransferase, TrmH family, group 3 [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 248

 Score =  224 bits (573), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YG+H V A L    +   ++   +    +               +K V  Q +D +
Sbjct: 2   NEIIYGIHAVQAILKRDPQLFKEVYLLERRNDQRFQCIIKQLKQKKIIIKIVNRQWLD-M 60

Query: 105 VGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             K A HQG+                P L A   + LL+VLD V DPHN+GA LR A A 
Sbjct: 61  QVKGATHQGIIARVQTNRRQFQEQDLPALLAQHTAPLLLVLDGVTDPHNLGACLRCADAA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             + II  +  S   +A + K ASGA E +P I+++NL   L+ +       +G + ++ 
Sbjct: 121 GVNAIIIPRNRSAYLNATVKKVASGAAETMPLIQVTNLARTLRLLQEHNILILGTTIEAD 180

Query: 218 KPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + Q        IAL++GAEG G+R  T++    +  + M G + +LNVS A  V L+ 
Sbjct: 181 SHIYQTSFKFTSPIALVVGAEGNGIRRLTKKYCNELLRIPMVGSVASLNVSVAVGVFLFE 240

Query: 276 TQNHF 280
                
Sbjct: 241 VVRQR 245


>gi|315225077|ref|ZP_07866894.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314944760|gb|EFS96792.1| RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 244

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  AL       K+F     +  L R           PV+ VP + ++++  K 
Sbjct: 7   IYGIRALIEALKAGKTIDKVFLQKGLQGGLFRELMPLLQAAQVPVQYVPVEKLNRLTKK- 65

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+     + +         + L +VLDH++D  N GAI+R+A      G
Sbjct: 66  -NHQGVVATLSPVDYHNFEDLVISVTESGVTPLFLVLDHLSDVRNFGAIIRTAECTGVSG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR S S +A   K+++GA+  +P  ++ NL DA+  +   G + +  +  + + L 
Sbjct: 125 IIIPKRGSVSITADTVKTSAGAVFRVPICKVENLVDAVYYLQGSGIRVVAATEKTSQLLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E      A+++GAE  G+ P   +   S A L M G I +LNVS A AV LY      
Sbjct: 185 AEDFTVPTAIVMGAEDVGVSPAVLKVVDSKAKLPMVGDISSLNVSVACAVFLYEALKQR 243


>gi|227873419|ref|ZP_03991674.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
 gi|227840724|gb|EEJ51099.1| tRNA/rRNA methyltransferase [Oribacterium sinus F0268]
          Length = 249

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 13/246 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101
           + E   L G + V  A     + I +L      K+                +  V    +
Sbjct: 2   REEGYTLIGRNPVLEAFR-AGKTIDRLFIQDGLKDGPILSILREAKKQDLVIDFVKKSRL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D++   E  HQG+    +      L+ +         +    +LD + DPHN+GA++R+A
Sbjct: 61  DEMSSGE-THQGVIAYLSAYEYAPLEELLQVAKDKGEAPFFFLLDGIEDPHNLGAMIRTA 119

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                 G+I  KR +   +A +A++++GAL +    +++NL   ++++   G   +    
Sbjct: 120 NLAGAHGVIIPKRRAVGLTATVARTSAGALNYTKVCKVTNLVQTMEELKKEGMWFVCGDM 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +  + +      I L+LG EG+G+    +ET    A + M G + +LN S A  V  Y
Sbjct: 180 RGE-SMYKLNLTGSIGLVLGNEGEGVSRLVKETCDMQASIPMKGELDSLNASVACGVLAY 238

Query: 275 ITQNHF 280
                 
Sbjct: 239 EIVRQR 244


>gi|215429080|ref|ZP_03426999.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
          Length = 298

 Score =  224 bits (573), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 15/262 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQKS-RHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNA 77
           A LR +H   K+ ++  ++  +   + E +   G + V   L    P+  ++  L T+ A
Sbjct: 41  AHLRPHHPAAKRARAQPRRPVKRADETETVL--GRNPVLECLRAGVPATALYVALGTE-A 97

Query: 78  LARLDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------ 129
             RL           +  V      +D++     +HQG+AL+  P      D +      
Sbjct: 98  DERLTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALD 156

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP 
Sbjct: 157 QPPALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPV 216

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++   
Sbjct: 217 ARATNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCD 276

Query: 250 SMAHLHMPGIIKALNVSNAAAV 271
            +  + M    ++LN S AA V
Sbjct: 277 EVVFIPMAAQAESLNASVAAGV 298


>gi|37913005|gb|AAR05334.1| predicted tRNA/rRNA methyltransferase [uncultured marine alpha
           proteobacterium HOT2C01]
          Length = 257

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 132/253 (52%), Gaps = 8/253 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--P 90
           M   ++K     Q  + ++YG H V  AL N +R  +++  T  A  +L  +  L +   
Sbjct: 1   MSKRSKKLPKKRQNSDYWIYGHHAVVGALMNENRVKYEVYFTSEAEKKLKNEIKLENINV 60

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPH 145
             +K      ID ++   + HQG+ +    L +P L            ++ +LD ++DP 
Sbjct: 61  ISIKK-TRDEIDLLLKGISNHQGICMRVEKLQTPKLSDFINNLNEERSIIFLLDQLDDPQ 119

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RSA+AF+ DGII T   S +E++ LAK+AS AL+ +P+I+I N++  ++ +   
Sbjct: 120 NVGAIFRSALAFNIDGIILTNTNSVTENSFLAKTASSALDKVPFIKIQNISSCIKILKDS 179

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+   GL   +++ + +     KI  ILG+E KG+R  T         + M   +++LNV
Sbjct: 180 GYWIYGLDMKAERSITETTFPKKIVFILGSESKGMRKITDSLCDEGLKIKMSDNLESLNV 239

Query: 266 SNAAAVALYITQN 278
           SN AA+ ++   N
Sbjct: 240 SNTAAIIMFYVSN 252


>gi|294678305|ref|YP_003578920.1| TrmH family RNA methyltransferase [Rhodobacter capsulatus SB 1003]
 gi|294477125|gb|ADE86513.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacter capsulatus
           SB 1003]
          Length = 264

 Score =  224 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 91/229 (39%), Positives = 132/229 (57%), Gaps = 10/229 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-- 105
            L+L+G+H V  AL NP+R   +L+ TKNA  +L  +A        + V P+  D  V  
Sbjct: 21  TLWLFGLHAVRDALMNPARVKLRLVLTKNAADKLA-EAIAAGGLAPEIVDPRKFDAHVPL 79

Query: 106 GKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           G + VHQG ALE  PL    L  V        L+++LD V DPHN+GAILRSA  F    
Sbjct: 80  GPDQVHQGAALEVKPLDWGKLADVALTGAGLPLVVMLDRVTDPHNVGAILRSAEVFGARA 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++   R+S  E+  LAK+ASGALE  PY+R++NL++A+  +   G+  IGL+ +++  L 
Sbjct: 140 VVAPARHSAPETGALAKTASGALERQPYLRVTNLSEAMGALRDMGYVLIGLAGEAEMTLA 199

Query: 222 Q---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +   E+    +A++LGAEG GLR KT+ T   +  +   G   +LNVSN
Sbjct: 200 EGLAEVGTRPVAIVLGAEGPGLREKTRATCDHLVRIPFAGAFGSLNVSN 248


>gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 280

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 13/261 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALAR 80
           +R +H   K+ ++  ++    +      L G + V   L    P+  ++  L T+ A  R
Sbjct: 1   MRPHHPAAKRARAQPRRPVKRADETETVL-GRNPVLECLRAGVPATALYVALGTE-ADER 58

Query: 81  LDWDANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNS 132
           L           +  V      +D++     +HQG+AL+  P      D +      +  
Sbjct: 59  LTECVARAADSGIAIVELLRADLDRMTANH-LHQGIALQVPPYNYAHPDDLLAAALDQPP 117

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            LL+ LD+++DP N+GAI+RS  AF   G++  +R S S +AV  ++++GA   IP  R 
Sbjct: 118 ALLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARA 177

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +NLT  L+     G + IGL +     L+     D + +++G+EGKGL    ++    + 
Sbjct: 178 TNLTRTLKGWADRGVRVIGLDAGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVV 237

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
            + M    ++LN S AA V L
Sbjct: 238 SIPMAAQAESLNASVAAGVVL 258


>gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           gallicum DSM 20093]
 gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           gallicum DSM 20093]
          Length = 348

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 136/298 (45%), Gaps = 27/298 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++           R+ R   ++ +  + ++ TS  ++L + G + V  AL
Sbjct: 35  KGPTPKAEDRVYHKAYKAKKAAERHTRADPRLAARRRVAKFTSDSDDLVI-GRNAVLEAL 93

Query: 62  N--NPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               P+  ++     + +   R            +       +D+I  K   HQG+ ++ 
Sbjct: 94  RVSVPASTLYVAARLEHDDRTREIMRLAGIQGLHILEADRLEMDRIA-KGGHHQGVIMKA 152

Query: 119 APLLSPTLDAVRN---------------------SQLLMVLDHVNDPHNIGAILRSAVAF 157
            P    +L+ + +                       L + LD V DP N+GA++RSA AF
Sbjct: 153 QPFQYSSLNELADRAERKARAMQEASNESARINARPLFIALDGVTDPQNLGAVIRSAAAF 212

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+  +GL     
Sbjct: 213 GANGVILPERRSASVTAAAWKVSAGAAAHMPIARVVNLTKAIEGLKERGYYAVGLDGSGS 272

Query: 218 KPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K + Q   + D + ++LG+EGKGL   T+E    +A + M  ++++LN S AA + LY
Sbjct: 273 KEVGQTGFETDPLIVVLGSEGKGLSRLTREACDCIAGIPMTSMVESLNASVAAGITLY 330


>gi|237756237|ref|ZP_04584798.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691595|gb|EEP60642.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 248

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 118/244 (48%), Gaps = 7/244 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  +L ++G + V  AL         L+A  +   R   +        V+ V  Q I+ 
Sbjct: 2   EKENHLVIWGRNPVIEALKAGRSLEKILIAHDSHPPRELLELANEKKVKVQRVSRQKIED 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +   +   QG+    +P+     + +     +   ++++LDH+ DP N+G+ILR+A  F 
Sbjct: 62  LANTKKT-QGVVALVSPIKYYDENEIIDKTIKEKGIMLILDHITDPQNVGSILRTAEIFG 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I  K  S   + V+ K+++GA+ H+P  ++ +L + ++K    G   + +     +
Sbjct: 121 VSGVIIPKERSSPINEVVIKASTGAVFHLPIAKVGSLRNVIEKFKKKGGWVVAVE-KGGR 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + +      IAL++G+EGKG+     E A  +A + M G I +LNVSNA ++AL+    
Sbjct: 180 NIAEIDFPYPIALVVGSEGKGVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFK 239

Query: 279 HFAK 282
              K
Sbjct: 240 RRIK 243


>gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
           YK9]
 gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
           YK9]
          Length = 264

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 5/258 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K   S   K +H  +     + G+H V  AL   ++    +   +  L       
Sbjct: 10  QNARAKGWASLLDK-KHRDRSGQFLVEGIHLVKEALECGAQVETIVYDGERGLPLELQQL 68

Query: 86  NLPHPFPVKTVPPQ--TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                FP   V      + K  G ++     A+   P++  T    R   L++VLD V D
Sbjct: 69  PALIAFPELLVSASTVVMAKCTGTDSPPPVFAVVAKPVVEETA-LFREQSLVVVLDGVRD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+RSA A   D ++  +      +    +S  G+L H+P I  ++L + L K  
Sbjct: 128 PGNVGTIIRSADAVGADAVVLGRGCVDLYNPKTVRSTMGSLFHLPVIE-ADLLELLPKAQ 186

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G +    S  S              L++G+E  GL P+  E A     + + G  ++L
Sbjct: 187 ERGIRLAATSLQSAVSCYDCDWTSATWLLMGSESDGLSPEVLELADQSVIIPIRGRAESL 246

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ AA V LY       
Sbjct: 247 NVAMAATVILYEALRQRG 264


>gi|284038016|ref|YP_003387946.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
           74]
 gi|283817309|gb|ADB39147.1| RNA methyltransferase, TrmH family, group 3 [Spirosoma linguale DSM
           74]
          Length = 276

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 116/270 (42%), Gaps = 16/270 (5%)

Query: 24  RRNHRDYK---KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           RRN R  +   K +    K ++  QP+ + ++G+ +V   L +   +I +L   K     
Sbjct: 4   RRNPRVNRPNYKPRPGGSKPQYQPQPDEM-VFGIQSVIETLKSDQ-QIDKLYMEKGLSNP 61

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQ 133
              +        ++ VP + +D+   K   HQG+    A +    L  V           
Sbjct: 62  DIQNLAFQKRVTIQRVPVERLDRFTRK--NHQGVVCLIAQVQYVKLSNVIADVFERGEVP 119

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++LD + D  N GAI R+A       I+   R + + ++   K++SGAL HI   R  
Sbjct: 120 FFLLLDRITDVRNFGAIARTAECTGIQCIVIPGRGAAAINSDAMKTSSGALNHISVCREP 179

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSM 251
           +LT+ ++ +   G   +  +  S + L +        +A+I+G+E  G+ P+      + 
Sbjct: 180 DLTETVKYLQESGITVVACTEKSARDLYERTTDLTGPMAIIMGSEEDGISPELLRMVDTH 239

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + + G + +LNVS A  V LY      +
Sbjct: 240 VKIPLLGAVGSLNVSVATGVILYEAVRQRS 269


>gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
 gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
          Length = 289

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/262 (35%), Positives = 132/262 (50%), Gaps = 18/262 (6%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           SH    R+  R +      + +S   +  +   +YG H V AAL+N  R +  +  T  A
Sbjct: 8   SHAGSDRQTERSF----DGSTRSTEPAVDDPTLVYGRHAVRAALHNDRRHVVAIRHTVGA 63

Query: 78  -------LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV- 129
                  L+ L        P P + V    +D  +   AVHQGL L+  PL  P L  + 
Sbjct: 64  GDAMAVFLSELPEPRRRSLPAP-QPVDATELDASLPDGAVHQGLVLKVTPLPDPNLSDLI 122

Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                R   +L+VLD V DPHN+GA+LRSA AF    ++   R+ P  + VLAK ASGAL
Sbjct: 123 VAWEGRTDIVLVVLDQVTDPHNVGAVLRSAAAFGASAVVLQDRHGPPVTGVLAKIASGAL 182

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           + +P +R+ NL  AL+ +   GF   GL+ D    L +     + A++LGAEG GLR  T
Sbjct: 183 DVVPLVRVVNLARALRDLQENGFWCTGLAEDGSVDLGRVDLGGRCAIVLGAEGAGLRRLT 242

Query: 245 QETATSMAHLHMPGIIKALNVS 266
           +ET  ++A L     I +LNVS
Sbjct: 243 RETCDALARLPTCPPIGSLNVS 264


>gi|229074153|ref|ZP_04207199.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
 gi|229094814|ref|ZP_04225819.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
 gi|229100891|ref|ZP_04231695.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
 gi|229113768|ref|ZP_04243203.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228669639|gb|EEL25046.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228682470|gb|EEL36543.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-28]
 gi|228688557|gb|EEL42430.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-29]
 gi|228708923|gb|EEL61050.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-18]
          Length = 212

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 101/206 (49%), Gaps = 9/206 (4%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132
           ++       +   ++  P + +D++V  E  HQG+  + A      L+ +          
Sbjct: 2   QIVLALAKENKIILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNED 59

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++LD + DPHN+G+I+R+A A    G+I  KR +   +A +AK+++GA+E+IP  R+
Sbjct: 60  PFFLILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARV 119

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +NL+  + ++   G    G  +  K           I L++G+EGKG+     E    + 
Sbjct: 120 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLI 179

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            L M G + +LN S AA++ +Y    
Sbjct: 180 TLPMVGKVTSLNASVAASLLMYEVYR 205


>gi|73667231|ref|YP_303247.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
 gi|72394372|gb|AAZ68649.1| RNA methyl transferase TrmH, group 3 [Ehrlichia canis str. Jake]
          Length = 252

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 9/235 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103
           +++YG H   AAL N +R+ +++L T+N          +          +KTV    I+ 
Sbjct: 6   IWIYGKHACIAALQNKNRECYEMLVTENITKNNSEITKISELCKQRNINLKTVNLNYINS 65

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLL----MVLDHVNDPHNIGAILRSAVAFSC 159
           ++   + HQG+AL+ + +   T++ + NS  +    ++LD + D HN+GAI+RSAV F+ 
Sbjct: 66  VLPHNSNHQGIALKASTINPLTIEEILNSSTINSTIILLDQITDIHNVGAIMRSAVCFNV 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II     SPSE+  ++K++SGA++ IP   + NL   ++   + G+   G  +   + 
Sbjct: 126 DAIILPYHNSPSENCGMSKTSSGAIDMIPIAYVINLVSTIKLFKNAGYWCYGFDTKEGEL 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L +   ++K  +I G+E KG+R  T+E    +  +     I +LNVSNAAAVALY
Sbjct: 186 LHKTKFDNKKLIIFGSEDKGMRKLTKENCDFLLKIATSNKIDSLNVSNAAAVALY 240


>gi|189183948|ref|YP_001937733.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
           str. Ikeda]
 gi|189180719|dbj|BAG40499.1| tRNA/rRNA methyltransferase, TrmH family [Orientia tsutsugamushi
           str. Ikeda]
          Length = 266

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 128/236 (54%), Gaps = 6/236 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +  ++ +++G H   AALNNP R I  +  T++    L   + L      K V  + + +
Sbjct: 26  TDKKSYYIFGTHASLAALNNPLRVIRYIYCTESCFLSL---SKLIQKHDYKIVTTKFLHQ 82

Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           ++G + VHQG+A+ T PL       +D    +  + +LD + D +N+GAI+RSA AF+  
Sbjct: 83  LLGSQIVHQGIAVNTIPLTINGIKHIDLATPNYKIAILDQLLDHNNLGAIIRSAAAFNIS 142

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +  S  E+  +AK A GALE I  +++ NL + +  +  +GF  IGL  ++   L
Sbjct: 143 TIILPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKYGFWIIGLDLNNSNQL 202

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            ++  + K+A +LG+E KGLR  T++    +  + M    ++LNV+ AA +  Y +
Sbjct: 203 TEQTFHSKMAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFYES 258


>gi|257057470|ref|YP_003135302.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
           43017]
 gi|256587342|gb|ACU98475.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
           43017]
          Length = 312

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 14/244 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVP 97
             ++     + G + V  AL    P+  ++  L   +A  R+     +       +  VP
Sbjct: 58  KKAEEAPEIIAGRNPVVEALRADVPATALYVAL-NIDADDRVTEAVRMAADKGVSILEVP 116

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
              +D+     AVHQGL L+  P    T D +           LL+ LD V DP N+GAI
Sbjct: 117 RTELDRKTD-GAVHQGLGLQVPPFSYATPDELLQTARESGEPPLLVALDGVTDPRNLGAI 175

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA AF   G++   R S   +AV  ++++GA   +P    +NLT  L++  + G    
Sbjct: 176 IRSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLKEWAAEGLLIA 235

Query: 211 GLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           GL +D    ++   I  D + +++G+EG+GL    +ET      + M   +++LN S A 
Sbjct: 236 GLDADGSTDIDTMNIDVDPLVVVVGSEGRGLSRLVRETCDFTVSIPMASGVESLNASVAG 295

Query: 270 AVAL 273
           AV L
Sbjct: 296 AVLL 299


>gi|150007357|ref|YP_001302100.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|301310641|ref|ZP_07216580.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
 gi|149935781|gb|ABR42478.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|300832215|gb|EFK62846.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp. 20_3]
          Length = 248

 Score =  224 bits (571), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            EN  ++G+  V  A+      + ++L  ++    L++  ++       PV+ VP + +D
Sbjct: 2   KENEMVFGIRAVIEAIQADKE-VDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K   HQG+    + +   +L+ +            +++LD V D  N GAI R+  
Sbjct: 61  RLTRK--NHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D I+   + S S +A   K+++GAL  +P  +  ++  A++ +   G +    S  
Sbjct: 119 CAGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEK 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +          +A+++GAE  G+ P+      +M  +   G I +LNVS A ++ +Y 
Sbjct: 179 AAENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYE 238

Query: 276 TQNHF 280
                
Sbjct: 239 VVRQR 243


>gi|310777971|ref|YP_003966304.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
           DSM 2926]
 gi|309747294|gb|ADO81956.1| RNA methyltransferase, TrmH family, group 3 [Ilyobacter polytropus
           DSM 2926]
          Length = 236

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL NP   I ++   K     ++    +L       +     +        
Sbjct: 4   IIGLNPVTEALQNPETNIEKIEIFKGLKDDKIGRIKSLASKRNIKIHFTDKRA------- 56

Query: 108 EAVHQGLALETAPLLS-----PTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+    +           L+ V      +++VLD V DP N GAI+RSA  F   
Sbjct: 57  -ENSQGVVAFISQYDYYVDLGAFLEKVAKDEKSIVLVLDGVQDPRNFGAIVRSAEIFGVK 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  +R S   +  + K+++GA+EH+  I+++N+++A+QK+    +   G     KK  
Sbjct: 116 GIIIPERNSVKINETVVKTSTGAIEHVDIIKVTNISEAIQKLKKLDYWVYGAEGSGKKCY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             E   ++ AL++G EG G+R K +E    + ++ M G I +LNVS A  + L
Sbjct: 176 YDEKYPNRTALVMGGEGSGIRKKVKENCDILVNIPMYGKINSLNVSVAGGILL 228


>gi|188995957|ref|YP_001930208.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188931024|gb|ACD65654.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 250

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L ++G + V  AL         L+A  +   R   +        V+ V  Q I+++   +
Sbjct: 9   LVIWGRNPVIEALKAGRSLEKILIAHDSHPPRELLELANEKKVKVQKVSRQKIEELANTK 68

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
              QG+    +P+     + +     +   ++++LDH+ DP N+G+ILR+A  F   G+I
Sbjct: 69  KT-QGVVALVSPIKYYDENEIIDKTIKEKGIMLILDHITDPQNVGSILRTAEIFGVSGVI 127

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   + V+ K+++GA+ H+P  ++ +L + ++K    G   + +     + + + 
Sbjct: 128 IPKERSSPINEVVVKASTGAVFHLPIAKVGSLRNVIEKFKKKGGWVVAIE-KGGRNIAEI 186

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                IALI+G+EGKG+     E A  +A + M G I +LNVSNA ++AL+       K
Sbjct: 187 DFPYPIALIVGSEGKGVSKSILEEADIIATIPMVGKITSLNVSNATSIALWELFKRRIK 245


>gi|229009601|ref|ZP_04166827.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
 gi|229053938|ref|ZP_04195372.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|229131099|ref|ZP_04260011.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|229165080|ref|ZP_04292875.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228618343|gb|EEK75373.1| tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228652312|gb|EEL08237.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|228721356|gb|EEL72877.1| tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|228751623|gb|EEM01423.1| tRNA/rRNA methyltransferase [Bacillus mycoides DSM 2048]
          Length = 222

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 9/206 (4%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132
           ++       +   ++  P + +D++V  E  HQG+  + A      L+ +          
Sbjct: 12  QIVLALAKENKVILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKLAEKRNED 69

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++LD + DPHN+G+I+R+A A    G+I  KR +   +A +AK+++GA+E+IP  R+
Sbjct: 70  PFFLILDEIEDPHNLGSIMRTADATGAHGVIIPKRRAVGLTASVAKASTGAIEYIPVARV 129

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +NL+  + ++   G    G  +  K        N  I L++G+EGKG+     E    + 
Sbjct: 130 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGNMPIGLVIGSEGKGMSRIIGEKCDFLI 189

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            L M G + +LN S AA++ +Y    
Sbjct: 190 TLPMVGKVTSLNASVAASLLMYEVYR 215


>gi|229815836|ref|ZP_04446160.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
           13280]
 gi|229808531|gb|EEP44309.1| hypothetical protein COLINT_02889 [Collinsella intestinalis DSM
           13280]
          Length = 308

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 112/274 (40%), Gaps = 12/274 (4%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           + + +   +R  +  +  Q+   + R     E  ++ G      AL      I + L  +
Sbjct: 31  RGARFTAQQRMPQASRTQQTAAPQRRDVHAAEGNYIEGRRAAFEALRTG-FPIKRALIAQ 89

Query: 76  NALARLDWDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-- 129
                      L         VK+VP   +D I      HQG+ LE        L  +  
Sbjct: 90  GVENEPAIRDLLGGLGEAGVSVKSVPRTQLDAISS-HGAHQGIVLEVGKFPYADLSDIIA 148

Query: 130 ----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                +  L++VLDHV D  N GAI+RSA      G++   + S   +    K+++GA+ 
Sbjct: 149 AAPAGSPALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVM 208

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+P  ++ N+  AL+ + S GF   G +  ++          ++AL++G+EG G+     
Sbjct: 209 HLPIAQVPNIARALEDLKSAGFWVGGATEHAEDVCWDAPFEGRVALVMGSEGDGISRLVL 268

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +T      L   G  ++LNV+ AA    +     
Sbjct: 269 DTCDFTTKLPQRGETESLNVAQAATALCFEWMRR 302


>gi|228898845|ref|ZP_04063127.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
 gi|228905889|ref|ZP_04069786.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
 gi|228963192|ref|ZP_04124361.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228796450|gb|EEM43889.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228853704|gb|EEM98464.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 200]
 gi|228860745|gb|EEN05123.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis IBL 4222]
          Length = 212

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 9/206 (4%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNS 132
           ++       +   ++  P + +D++V  E  HQG+  + A      L+ +          
Sbjct: 2   QIVLALAKENKVILQHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNED 59

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R+
Sbjct: 60  PFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARV 119

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           +NL+  + ++   G    G  +  K           I L++G+EGKG+     E    + 
Sbjct: 120 TNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLI 179

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            L M G + +LN S AA++ +Y    
Sbjct: 180 TLPMVGKVTSLNASVAASLLMYEVYR 205


>gi|325972623|ref|YP_004248814.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
 gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta sp. Buddy]
          Length = 251

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 113/249 (45%), Gaps = 22/249 (8%)

Query: 51  LYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G H +   L        ++ +    +    L+  A L     VK +    +D++V  +
Sbjct: 5   IIGFHAIEEGLKGAASGSVLYLVRGMGSNTQALERQALLTGKVLVKKIAKVEMDRMVD-Q 63

Query: 109 AVHQGLALE----------------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           A H+G  L+                     +   D   +S L++VLD + DP N+GAILR
Sbjct: 64  ADHRGAVLDLMVPGKGSGARIPAMSVKEYCATLKDD--DSALVLVLDEITDPQNLGAILR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA  FS   +I  +R S   +  + K +SGA +++P   ++N+   ++ + S GF   G 
Sbjct: 122 SADQFSVSLVIIPERRSAQANTTVVKVSSGAAQYVPLATVTNMNREIEYLKSQGFWVYGA 181

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S   +  + + +   +  L++G EGKG+   TQ+    M  + M G I +LNVS A  + 
Sbjct: 182 SMSGQA-VYKTVFPKRTVLVMGNEGKGIGQLTQKLCDHMVTIPMSGHIDSLNVSVATGIL 240

Query: 273 LYITQNHFA 281
           LY  +   A
Sbjct: 241 LYEVRRQQA 249


>gi|312622555|ref|YP_004024168.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203022|gb|ADQ46349.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 270

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 118/289 (40%), Gaps = 34/289 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  IS +++E I  +K  H  K R   R +                    + G+  V  A
Sbjct: 6   VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46

Query: 61  LNNPSRKIFQLLATKNALAR----------LDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +      I  ++ ++ A  +          L  D  +     V    P  + + +   + 
Sbjct: 47  IEYQIECINLVIFSQQAKEKYQEFFEECKYLLQDGKIKRVIEV----PDKLFEYITTTST 102

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            QG+  E    +   ++ ++N + +++ D++ DP N+G ++R A AF  D ++TTK    
Sbjct: 103 PQGILAECI-FVDKDINFIKNLRRVVIADNLQDPGNLGTLIRCADAFGFDAVVTTKGTVD 161

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G+L H+  +R +     ++ +    F     +      + + + + +  
Sbjct: 162 IYNPKTTRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFC 221

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +++G E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 222 IVIGNESEGVSDSFAKVATRKIKIPMVGKTESLNAAVAASIVLYELRKR 270


>gi|323704472|ref|ZP_08116050.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535934|gb|EGB25707.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 256

 Score =  223 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 26/278 (9%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I+ +K+E I  +K     K R   R +                   F+ G ++V  AL 
Sbjct: 2   VITSEKNEFIKDVKKLADKKYRYEKRLF-------------------FVEGKNSVFEALK 42

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           +   +I  LL  ++       +        +  V  +   KI    A  Q +        
Sbjct: 43  SG-FEIVHLLVAEDFNIDFQIEKE-----KIVFVDEKVFKKISDTVA-PQMIMAVVKMPK 95

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               D V+     ++LD V DP N+G I+RSA AF+ DG+          +  + +S  G
Sbjct: 96  WEVNDIVKEGGFYVILDEVQDPGNVGTIIRSADAFNVDGVFAINNTVDIYNPKVLRSTMG 155

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ H+P +     +     +   G + +  S  ++K +     +   ALI G E +G+  
Sbjct: 156 SIFHLPVVNDVEPSRLFHVLKKHGIRILSTSLKAEKYIYDFDISKNAALIFGNESRGVNR 215

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              E   S   + M G+ ++LNVS AA++ LY ++   
Sbjct: 216 LLDEFIDSSFKIPMDGMAESLNVSVAASICLYESERQR 253


>gi|332669127|ref|YP_004452135.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
           484]
 gi|332338165|gb|AEE44748.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas fimi ATCC
           484]
          Length = 335

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 12/245 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIV 105
             + G ++V  AL          LA +   +   R          +P+  V    +D++ 
Sbjct: 91  EIVSGRNSVVEALRAGIPVSTVYLAARLEADDRTREIVSTAAEAGYPLLEVSRTELDRLT 150

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158
              +VHQG+A++  P      + + +         L++ LD V DP N+GA+LRSA AF 
Sbjct: 151 D-GSVHQGVAIQVPPYAYADEEDLLDAAEVSGRPALVVALDGVTDPRNLGAVLRSAGAFG 209

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++  +R +   +A   K ++GA   +P  R++NL   LQ     G   +GL     +
Sbjct: 210 AHGVLVPERRAAGVTASAWKVSAGAAARVPVARVTNLVRTLQAYKEAGVFVVGLDGGGDQ 269

Query: 219 PLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            + +     D + L++G+EGKGL    +E   ++A + +   +++LN   AA +ALY   
Sbjct: 270 SVAELAFAEDPLVLVVGSEGKGLSRLVREQCDAIASIPIASAVESLNAGVAAGIALYEVA 329

Query: 278 NHFAK 282
               +
Sbjct: 330 RRRGE 334


>gi|229136938|ref|ZP_04265565.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
 gi|229194482|ref|ZP_04321285.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228588948|gb|EEK46963.1| tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228646476|gb|EEL02683.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 198

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 9/192 (4%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
           +  P + +D++V  E  HQG+  + A      L+ +             ++LD + DPHN
Sbjct: 2   QHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHN 59

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G
Sbjct: 60  LGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERG 119

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G  +  K           I L++G+EGKG+     E    +  L M G + +LN S
Sbjct: 120 LWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNAS 179

Query: 267 NAAAVALYITQN 278
            AA++ +Y    
Sbjct: 180 VAASLLMYEVYR 191


>gi|225848046|ref|YP_002728209.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643892|gb|ACN98942.1| RNA methyltransferase, TrmH family, group 3 [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 247

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 7/240 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
              + E L ++G + V  AL +       L+A  +   +            V+ VP Q +
Sbjct: 2   KEEKGEKLVIWGRNPVIEALRSGKSLEKILVAHDSHPPKDLLKLAEERKVKVQKVPRQKV 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +++ G +   QG+    +P+     D      ++   +L+VLDH+ DP N+G+I+R+A  
Sbjct: 62  EELAGTKKT-QGVVALLSPIQYWNEDKIIDKVIKEKGILLVLDHITDPQNVGSIMRTAEI 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GII  K  S   + V+ K+++GA+ ++P  ++ +L + L+K    G   + +    
Sbjct: 121 LGVSGIILPKERSSPINEVVVKASTGAVFYLPIAKVGSLRNTLEKFKKKGGWVVAVE-KG 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K + +      +AL++G+EGKG+     E A  +A + M G I + NVSNA A+AL+  
Sbjct: 180 GKNIHEIDFPFPLALVVGSEGKGVSKSVLEEADIVASIPMKGKITSFNVSNATAIALWEV 239


>gi|217077820|ref|YP_002335538.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
           TCF52B]
 gi|217037675|gb|ACJ76197.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho africanus
           TCF52B]
          Length = 238

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 7/233 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG + +   L     K+  +  +    A L            P      + + ++   E
Sbjct: 3   VYGRNILKEILETN-TKVRMIYFSDTNSAELTELIEEVKKRRLPFTIANKKVLQRLSNTE 61

Query: 109 AVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
             HQG+ ++           +       L++LD + DPHN GAI+R+AVA   D II  K
Sbjct: 62  K-HQGVVVDIGEFEYKDESIIESLEKPFLVILDQLQDPHNFGAIIRTAVASGADAIIIPK 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             S   +  + K + G +  I  I+  N+   ++ +   G    G  ++ K    +    
Sbjct: 121 NNSVQVTPTVVKVSVGTIFKINIIKTINIARFIKNIKEMGIWVYGADTNGKV-YYKTDLR 179

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             IA++LG EG G+RP  +E   ++  + M   +++LNVS +A + LY     
Sbjct: 180 KPIAIVLGNEGAGIRPNVKEKCDALITIPMKNSVESLNVSVSAGILLYEVMRQ 232


>gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 278

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 112/268 (41%), Gaps = 17/268 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++ +  +K++   +     + G    S     P  ++ +   T++ L +   +A
Sbjct: 6   SNSQVKQVSAIAKKAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQGEEA 62

Query: 86  -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNS 132
             L      +TV  + +  +   +   QG+            D +            +  
Sbjct: 63  DRLLAGCRYETVTGEVMKAMADTQ-TPQGILALCRQFSYELSDILGERKEGDEHTQEKAP 121

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             L++L+ + DP N+G ILR+       G+I     +   +  + +S  G++  +P++ +
Sbjct: 122 AQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYRVPFVYV 181

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +L DA++++   G +        +K  +Q+        ++G E  GL  +T E A +  
Sbjct: 182 EDLADAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADAYI 241

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M G +++LN + AA++ +Y T    
Sbjct: 242 KIPMLGKVESLNAAVAASILMYETARQR 269


>gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905]
 gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905]
          Length = 254

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 114/267 (42%), Gaps = 20/267 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S +++         + +KK+ +     +   +     + G H V  AL N   ++ 
Sbjct: 2   KRIESTQNALV-------KYWKKLATTR---KERERSGEFIVEGFHLVEEALKN-KEQVL 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDA 128
           Q++  +     + W  +      V +V  +   +        QG+      P L   + A
Sbjct: 51  QIIVREGVDLPMLWPIDGIAIIEVTSVVAKEFAE----TETSQGVFAICKQPALEEEVKA 106

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             + + ++++D V DP NIG ++R+A A   D +I  K  +   +    ++A G+  HIP
Sbjct: 107 --SWRKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAAQGSHFHIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R   LT+ +  + + G    G + D    P          A+I+G EG G++P+    
Sbjct: 165 VVR-EELTECVDFLQAQGVPVFGTALDEDAVPYSDIQHTGAFAIIMGNEGSGIQPQLLAM 223

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + + G  ++LNV+ A  + LY
Sbjct: 224 TDQNIIIPIFGQAESLNVAVATGIVLY 250


>gi|160881446|ref|YP_001560414.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160430112|gb|ABX43675.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
           phytofermentans ISDg]
          Length = 248

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           E L + G + V  A        ++F L   ++   +        +   +  V  + +D++
Sbjct: 4   EELTMVGRNAVLEAFRAGKTIDRLFILDGCQDGPIKSILREAKKYDTIITFVKKERLDQM 63

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             +E  HQG+    A      +D +         +  L++LD + DPHN+GA+LR+A   
Sbjct: 64  -SEEGKHQGVIAYAAAYEYAEVDDLLEAAKAKGEAPFLIILDGIEDPHNLGAMLRTANQA 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              GII  KR +   +A +AK ++GA+ + P  +++NL   ++++   G   +      +
Sbjct: 123 GAHGIIIPKRRAVGLTATVAKVSAGAINYTPVAKVTNLVATMEELKQKGLWFVCADMSGE 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-- 275
               Q      I L++G+EG+G+    +E    +  + M G I +LN S A  V  Y   
Sbjct: 183 VMYRQ-NLTGPIGLVIGSEGEGVSRLVKEKCDFVTKIPMVGDIDSLNASVAMGVLTYEIV 241

Query: 276 TQNHFAK 282
            Q  FAK
Sbjct: 242 RQRSFAK 248


>gi|291515114|emb|CBK64324.1| rRNA methylase, putative, group 3 [Alistipes shahii WAL 8301]
          Length = 246

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 12/240 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+  V+ A+    ++I +L   K A  +L     D  + H    + VP + ++++  
Sbjct: 5   LIFGIRPVAEAIE-AGKQIEKLYIRKGAEGQLMQELKDLCMRHRLHYQEVPVEKLNRLT- 62

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+  +TA +    L  +        + L+++ D V D  N GAI RSA      
Sbjct: 63  -RGNHQGVVAQTAAIEYVQLTDILERVPEDETPLVVLFDGVTDVRNFGAIARSAECAGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+IT  + S   +A   +S++GAL  IP  R+ ++ + L+ + + GFQ +  +  S+K L
Sbjct: 122 GLITPLKNSAPVNAEAIRSSAGALTTIPVCRVGSVRNTLKALQAEGFQVVAATEKSRKLL 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                     +++GAE  G+  +  +       + + G I++LNVS AAAV L+      
Sbjct: 182 YDADFRRPTVIVMGAEDTGISKEVLKLCDEQLAIPLIGHIESLNVSAAAAVMLFEVVRQR 241


>gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           lwoffii SH145]
 gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
           lwoffii SH145]
          Length = 249

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 13/245 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPH--PFPVKTVPPQTIDKIV 105
            + YGVH+V + L     ++  L   K     RL     L       V+      ++K+ 
Sbjct: 5   EYFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQASRDKLEKLA 64

Query: 106 GKEAVHQGLALETAP---LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSC 159
           G +  HQG+         L    L+++ ++    LL+ LDH+ DPHN+GA +R+A A   
Sbjct: 65  G-QPFHQGVVAAVRAHPTLNEKDLESLLSANPQALLLALDHITDPHNLGACIRTAAAMGV 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK 218
           + +I  +  S + +    K A+G  + + +I+++NL   L ++   +  + +G   D K 
Sbjct: 124 EAVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQIKEDFNVRVVGTMLDEKA 183

Query: 219 -PLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P++        + +++GAE  GLRP TQ       ++ M G +++LNVS A  +ALY  
Sbjct: 184 LPIQNFDFTGTGVCIVMGAEDTGLRPITQSQCDQTVYIPMAGNLQSLNVSVATGMALYEA 243

Query: 277 QNHFA 281
                
Sbjct: 244 CRQRN 248


>gi|260654702|ref|ZP_05860192.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
           E3_33 E1]
 gi|260630718|gb|EEX48912.1| RNA methyltransferase, TrmH family, group 3 [Jonquetella anthropi
           E3_33 E1]
          Length = 278

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 115/245 (46%), Gaps = 8/245 (3%)

Query: 43  TSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQT 100
             + + L L +G +     L      + ++   +   A  +     L     ++ V    
Sbjct: 29  RDESDGLLLCWGRNPSLEQLERSGESVERVWLARGVEAEFEAQVVRLAGRTALERVDRLA 88

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAV 155
           +D++ G  AVHQG+AL        +LD +         L+++LD   DPHN+G+++R+A 
Sbjct: 89  LDQMTG-GAVHQGIALSLRRPDEVSLDDLLDQLAGGPALVILLDRCQDPHNLGSVIRTAE 147

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S   +  + K+++GA    P I + N+  AL  +   GF  +GL+ +
Sbjct: 148 AAGASAVLVPKDRSVRLTGTVVKASAGAALRFPVISVVNVKRALDDLKEAGFWVVGLAGE 207

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S +PL +   + +  L +GAEG GL   T+++   +A + M G  ++LN   AAA+  Y 
Sbjct: 208 SSEPLGKLAWDQRTVLAVGAEGTGLAELTRKSCDFLARIPMSGQAESLNAGVAAALGAYE 267

Query: 276 TQNHF 280
               F
Sbjct: 268 WARRF 272


>gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10]
 gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens
           MLS10]
          Length = 251

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 117/279 (41%), Gaps = 32/279 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M++I+  ++ +I + K  H  K R                    +    F+ G H +  A
Sbjct: 1   MDVIASVQNPRIKAWKKLHTKKGR-------------------DKSGLFFIEGDHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ET 118
           + +    I +L+  +N      W+       PV  V    ++++   E   QG A   E 
Sbjct: 42  IRSAI-TIKELILEENQSLPEAWED---PEVPVVWVTQPVLNELCETE-TPQGFAAVCEK 96

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            PL++  LD  R     + +D V DP N+GA++R+A A    G++         +  + +
Sbjct: 97  PPLVNLPLDDGR----FLFIDGVQDPGNLGAMIRTAEAAGITGVVIGDGTVDVYNGKVIR 152

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           S  G+L HIP  ++ +L +A++          G S             D  ALI+G EG 
Sbjct: 153 STQGSLFHIPVQKM-DLEEAVEICKEANVPVFGTSLQGST-FNALEPQDTFALIMGNEGS 210

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G+R +  E      ++ + G  ++LNV+ A  + LY  +
Sbjct: 211 GVRARLLEMTDQNLYIPIYGKAESLNVAVACGIVLYHLR 249


>gi|121997455|ref|YP_001002242.1| RNA methyltransferase [Halorhodospira halophila SL1]
 gi|121588860|gb|ABM61440.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Halorhodospira halophila
           SL1]
          Length = 271

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 10/240 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL--PHPFPVKTVPPQTIDKIVG 106
            +YG H    A       +  +        ARL+   +        V+ V  + +D++  
Sbjct: 25  LVYGQHAAREAAAYDPAGVEAVWVEHGRRDARLERLLDKLGRQGVTVERVHRRVLDQMA- 83

Query: 107 KEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +   HQG+ L  +            L       LL+VLD V DPHN+GA +RSA A    
Sbjct: 84  EGGNHQGIVLRYSGTPARGEGELADLVDAEPEPLLLVLDRVQDPHNLGACMRSAAAAGAH 143

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +  + + S  + K+A+GA++ IP+ +++NL   LQ++   G   +G + +++K  
Sbjct: 144 GVVAPRDRAAALSPAVHKTAAGAVQRIPFFQVTNLARTLQQLRDAGVHVVGAAGEAEKSC 203

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      +AL+LG EG+GLR  T+E       + MPG +++LNVS AA V L+      
Sbjct: 204 YEVDLRGPLALVLGGEGEGLRRLTRERCDERVAIPMPGSMESLNVSVAAGVLLFEAVRQR 263


>gi|269121680|ref|YP_003309857.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
           ATCC 33386]
 gi|268615558|gb|ACZ09926.1| RNA methyltransferase, TrmH family, group 3 [Sebaldella termitidis
           ATCC 33386]
          Length = 234

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 17/232 (7%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G++ V  AL+      KI     T     R            +     +        +
Sbjct: 4   IIGLNAVREALDGSKNIEKIEIYKGTNKDRIRDILSKASKKNIKIFYTDKR--------Q 55

Query: 109 AVHQGLALETAPLLS-----PTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              QG+A   +           L+ V  +   +++VLD + DP N GAI+RSA  F  DG
Sbjct: 56  ENSQGIAALVSEYDYYLELNEFLEKVLAKQRSIVLVLDQIQDPRNFGAIIRSAECFGVDG 115

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II   R S S +  + KS++GA+EH+  I+++N++D++ K+  +G+   G  +D +    
Sbjct: 116 IIIQDRNSVSVTETVVKSSTGAIEHVDIIKVTNVSDSMDKLKKYGYFIYGAEADGETEYY 175

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            E   +K+ L+LG+EGKG+R K +E    + ++ M G I +LNVS A  + L
Sbjct: 176 NEPFPEKLCLVLGSEGKGMRKKVKEHCDKILNIPMHGKINSLNVSVANGILL 227


>gi|229015494|ref|ZP_04172492.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
 gi|229021703|ref|ZP_04178285.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
 gi|228739571|gb|EEL89985.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1272]
 gi|228745781|gb|EEL95785.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1273]
          Length = 198

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 9/192 (4%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
           +  P + +D++V  E  HQG+  + A      L+ +             ++LD + DPHN
Sbjct: 2   QHAPKKKLDQLV--EGNHQGVIAQVAAYQYAELEDLFKVAEKRNEDPFFLILDEIEDPHN 59

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G+I+R+A A    GII  KR +   +A +AK+++GA+E+IP  R++NL+  + ++   G
Sbjct: 60  LGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEYIPVARVTNLSRTIDELKERG 119

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
               G  +  K           I L++G+EGKG+     E    +  L M G + +LN S
Sbjct: 120 LWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGEKCDFLITLPMVGKVTSLNAS 179

Query: 267 NAAAVALYITQN 278
            AA++ +Y    
Sbjct: 180 VAASLLMYEVYR 191


>gi|260061888|ref|YP_003194968.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
           HTCC2501]
 gi|88786021|gb|EAR17190.1| putative tRNA:rRNA methyltransferase [Robiginitalea biformata
           HTCC2501]
          Length = 244

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            E L ++G+  V  AL        ++L  K+    L R   +A   H   +  VPP+   
Sbjct: 2   KEELHIFGIRAVLEALEAGKTP-EKILVRKDLTGNLFRQLQEAAKKHNMSLTVVPPERFR 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           +   +   HQG+    +P+      A+         + L ++LD V+D  N+GAI+R+A 
Sbjct: 61  RF--ESRNHQGVVAVLSPITYREHTALIDETLARDKAPLFLLLDGVSDVRNLGAIIRTAE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+      S   SA   K+++GA  ++P  R  +L D +  + + G + +  +  
Sbjct: 119 CAGVSGLFLPASGSAPVSADTIKTSAGAAFNLPIARSPHLKDVVYYLQASGVRLVAATEK 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L +      +ALI+G+E +G+ P   +     A L M G I++LNVS A  V L+ 
Sbjct: 179 AESTLYEADLTGPLALIMGSEDRGIHPSLLKLCDIQAQLPMQGSIESLNVSVACGVFLFE 238

Query: 276 TQNHFA 281
            Q   A
Sbjct: 239 AQRQRA 244


>gi|21230973|ref|NP_636890.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769023|ref|YP_243785.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992138|ref|YP_001904148.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|52783316|sp|Q8PAG5|RLMB_XANCP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21112593|gb|AAM40814.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574355|gb|AAY49765.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733898|emb|CAP52104.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 249

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A +   L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAQGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG EG GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEGDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|282882312|ref|ZP_06290943.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300813901|ref|ZP_07094205.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297862|gb|EFA90327.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus
           lacrimalis 315-B]
 gi|300511964|gb|EFK39160.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 234

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 106/235 (45%), Gaps = 9/235 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++YG   V  AL N       L + + ++ ++   A       + ++    +DK+     
Sbjct: 3   YIYGRGPVIEALKNNKVDKIYLASHEGSIIKIKAMAK-EKKVLISSLSKDRLDKMA-PGK 60

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+    +         +      +    L++LD + DPHN+GAI RSA+ F+ DGII
Sbjct: 61  NHQGVVALVSGYEYKDFQELLDENKDKKEFRLLILDKMEDPHNLGAIARSALFFNFDGII 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K      +  + K++ GA++++   +++NL+  ++K+   GF       +    ++  
Sbjct: 121 IPKHREALVNDTVYKTSQGAVDNVNICQVTNLSQTIEKLKKAGFWIYAALLEGDN-IKDV 179

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + K+A+I+G EGKG+     + +     +       +LN S AA + +Y    
Sbjct: 180 DFSGKVAIIIGNEGKGISDNLIKASDFKVKIPNLSEFDSLNASVAAGIIMYEVIR 234


>gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
 gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
          Length = 323

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 114/275 (41%), Gaps = 18/275 (6%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-----LFLYGVHTVSAALNN--PSRKIF 69
            +   K  + +R    M     K R   +          + G + V  AL +  P+  ++
Sbjct: 38  KAEDRKKHKANRISNAMARQAAKRRPAPRRGGPKGTSEMVVGRNPVFEALRDGVPASTLY 97

Query: 70  --QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             Q +     +      A       +   P   +D++      HQGL L+  P      +
Sbjct: 98  VQQFIDNDERVREALQLAAERGNINLMEAPRPELDRLT-NGLNHQGLVLQVPPYEYAHPE 156

Query: 128 AV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +           L++ LD V DP N+GAI+RS  AF   G++  +R +   +A   K++
Sbjct: 157 DLTAAAYDNGEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTS 216

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKG 239
           +G     P  R++NLT ALQ     G   +GL+++    +         + +++G+EGKG
Sbjct: 217 AGTAARTPVSRVTNLTRALQDYKKAGITIVGLAAEGTHTVNDLAELAGPVVIVVGSEGKG 276

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     E    +  + MPG  ++LN   AA V LY
Sbjct: 277 LGRLVGENCDYLVRIPMPGGAESLNAGVAAGVVLY 311


>gi|262382068|ref|ZP_06075206.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           2_1_33B]
 gi|262297245|gb|EEY85175.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           2_1_33B]
          Length = 248

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 109/245 (44%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            EN  ++G+  V  A+      + ++L  ++    L++  ++       PV+ VP + +D
Sbjct: 2   KENEMVFGIRAVIEAIQADKE-VDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K   HQG+    + +   +L+ +            +++LD V D  N GAI R+  
Sbjct: 61  RLTRK--NHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D I+   + S S +A   K+++GAL  +P  +  ++   ++ +   G +    S  
Sbjct: 119 CAGVDAIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQVIRFLQQSGVKVFAASEK 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +          +A+++GAE  G+ P+      +M  +   G I +LNVS A ++ +Y 
Sbjct: 179 AAENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYE 238

Query: 276 TQNHF 280
                
Sbjct: 239 VVRQR 243


>gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
           flavogriseus ATCC 33331]
          Length = 318

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 13/246 (5%)

Query: 48  NLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +  + G + V  AL +  P+  ++  Q +     +      A       +   P   +D+
Sbjct: 74  SEMVVGRNPVFEALRDGVPATTLYVQQYIDNDERVREALQLAGERGNINLMEAPRPELDR 133

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQGL L+  P      + +           L++ LD V DP N+GAI+RS  A
Sbjct: 134 MT-NGLNHQGLVLQVPPYEYAHPEDLTSAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSA 192

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D 
Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252

Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  +E  E     + +++G+EGKGL     ET      + MPG  ++LN   AA + LY 
Sbjct: 253 EHTVEDLEALAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312

Query: 276 TQNHFA 281
                A
Sbjct: 313 VARRRA 318


>gi|226196377|ref|ZP_03791959.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pakistan 9]
 gi|254297770|ref|ZP_04965223.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 406e]
 gi|157807881|gb|EDO85051.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei 406e]
 gi|225931594|gb|EEH27599.1| RNA methyltransferase, TrmH family, group 3 [Burkholderia
           pseudomallei Pakistan 9]
          Length = 231

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 9/228 (3%)

Query: 62  NNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
            + +  + ++        R   D   A       +       +  +   E  HQG+    
Sbjct: 2   RHDASTVAEVFYDATRRDRRMQDFLQAAKEAGVRLIAADETRLWGLAHTER-HQGVVARV 60

Query: 119 APL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
             L     L+  LD +    LL+VLD V DPHN+GA LR A A     II  +  +   +
Sbjct: 61  EDLPLAQNLAELLDGIAGPALLLVLDGVTDPHNLGACLRVADAAGAHAIIAPRDRAAGLN 120

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           A  AK ASGA + +PYI ++NL  AL+++   G   IG S D+   +     +  +AL++
Sbjct: 121 ATAAKVASGAADTVPYITVTNLARALRELKDAGVWVIGTSDDATASVYDTKLDGPVALVM 180

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           GAEG+G+R  T++T   +  + M G +++LNVS A+ V LY       
Sbjct: 181 GAEGEGMRRLTRDTCDEVMFIPMAGSVESLNVSVASGVCLYEAVRQRG 228


>gi|257784982|ref|YP_003180199.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
           20469]
 gi|257473489|gb|ACV51608.1| RNA methyltransferase, TrmH family, group 3 [Atopobium parvulum DSM
           20469]
          Length = 338

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 106/246 (43%), Gaps = 12/246 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPP 98
            +P    + G   V+ AL      +   L    +  +      L         PV+ V  
Sbjct: 91  KKPATDLIEGRRAVAEALTVGI-PLKNALVQAASGQKDQEIEALARQLEQEGIPVERVAR 149

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRS 153
             +D +      HQG+ + T P     L  +       + L++VLDHV D  N GAI+RS
Sbjct: 150 PVLDSLSS-HGAHQGVIVRTQPFAYADLSEIIQRAGSANALVVVLDHVTDEGNFGAIVRS 208

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A      G++     +        K+++GA+ H+P  ++SNL  AL+++ + GF T G +
Sbjct: 209 AEVVGAAGVVIANARAARVGVGAYKTSAGAVLHLPIAQVSNLPRALEELKAAGFWTCGST 268

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             + + + +     ++AL++G+EG G+     E       L   G +++LNV+ A  V  
Sbjct: 269 EHATQSVWEAPMGGRLALVMGSEGSGISRLMLEKCDFTCKLPQFGQVESLNVAQATTVMC 328

Query: 274 YITQNH 279
           Y     
Sbjct: 329 YEWLRR 334


>gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
          Length = 268

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 122/283 (43%), Gaps = 20/283 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+   K+  E++ S+K++         +++KK+Q+     +   Q     L G H V+ A
Sbjct: 3   MDFEVKELVEELTSVKNARV-------KEWKKLQT----RKGRKQQGRYLLEGWHLVNEA 51

Query: 61  LNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L    R + +L+ TK  LA   D  A       V +V P  +  +  +    QG+ +  A
Sbjct: 52  LQAD-RGLHELIGTKEELAAHPDIVARFKE---VYSVTPAIMAAVT-ETVTPQGI-MVVA 105

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
            L      A   S   + LD V DP N+G ++R+A A    G++     +   S  + +S
Sbjct: 106 DLPDLHQVATDLSGAWLFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRS 165

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGK 238
             G+  H+      +L    + +   G+   G   + + K           AL++G EG+
Sbjct: 166 MQGSQFHLALYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGR 224

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+  +  +  T+  ++ M G  ++LNV+ +A + ++   +   
Sbjct: 225 GMSEELLKQTTANLYIPMRGQAESLNVAVSAGILMFELADALN 267


>gi|167626521|ref|YP_001677021.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596522|gb|ABZ86520.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 248

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 10/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++          +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + + N      +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEANDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 FA 281
            A
Sbjct: 244 RA 245


>gi|118473323|ref|YP_890295.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           smegmatis str. MC2 155]
 gi|254806534|sp|A0R557|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           MSMEG_6073
 gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
           smegmatis str. MC2 155]
          Length = 314

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 13/249 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP 98
               E   + G + V   L    P+  ++  L T +A  R+     +       +  VP 
Sbjct: 66  RKADETELVLGRNPVLECLRAKVPATALYVALGT-DADERVTESVQIAADRGISILEVPR 124

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
             +D++     +HQGL L+  P      D +           LL+ LD+++DP N+GAI+
Sbjct: 125 TDLDRM-SNHGLHQGLGLQVPPYAYAHPDDLLATARADAAPALLVALDNISDPRNLGAIV 183

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RS  AF+  G++  +R S S +AV  ++++GA   +P  R +NL   L+     G Q +G
Sbjct: 184 RSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQIVG 243

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L +     L++        +++G+EGKGL    +E   ++  + M G  ++LN S AA V
Sbjct: 244 LDAGGDTTLDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGPTESLNASVAAGV 303

Query: 272 ALYITQNHF 280
            L       
Sbjct: 304 VLAEIARQR 312


>gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 261

 Score =  222 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++  +K+ +   ++ ++ ++     + G   V  A       I  L+ T +   ++D 
Sbjct: 6   SKDNNLFKETKKLKER-KNRTKSNKYIIEGFRLVQEAFKAGLN-IECLIVTCDGKDKIDS 63

Query: 84  DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                +     +  +      +I+  E   QG+      +   TLD   N    ++ D V
Sbjct: 64  YLREYINKDIKIYEMVNSLFKEIISTEK-PQGIVAIVH-MNEKTLDL--NGSFYLLCDKV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A   DGII TK      +    +S  G+L ++P          ++ 
Sbjct: 120 QDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRSTMGSLFYVPVHYDDENMTLVKS 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +    F+ +  S D+ K   QE    K+ L +G EG G+  +  E A +   + MPG  +
Sbjct: 180 LKDKKFKIVVTSLDTDKDFFQESLKGKVLLTVGNEGNGVSDEVYELADTKVKIPMPGNAE 239

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A +V +Y     
Sbjct: 240 SLNVAIATSVIMYEKIRQ 257


>gi|328676598|gb|AEB27468.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
           novicida Fx1]
          Length = 248

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     T  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDTFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|237736329|ref|ZP_04566810.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229421677|gb|EEO36724.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 235

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           + G++ V   L N  + I +L   K A   +++    L       +     +        
Sbjct: 4   IIGINPVMEVLQNKEKTIEKLEIFKGAKDDKINKIKRLASERNIKIFYTDKKR------- 56

Query: 108 EAVHQGLALETAPLLS-----PTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+ +  +           L+ +      ++++LD + DP N GA++RSA  F   
Sbjct: 57  -ENSQGVVVHVSDYDYYVDFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVK 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  +R +   +  + K+++GA+E++  ++++N++DA+ K+    +   G   +  K  
Sbjct: 116 GIIIPERNAVRINETVVKTSTGAIEYVDIVKVTNISDAISKLKKLDYWVYGAEGEGSKDY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            QE    + AL+LG+EG G+R K +E+   +  + M G I +LNVS A  + L
Sbjct: 176 SQEKYPSRTALVLGSEGNGIRKKVKESCDVLIKIPMYGKINSLNVSVAGGIIL 228


>gi|254828578|ref|ZP_05233265.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258600976|gb|EEW14301.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
          Length = 252

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +       +W   L   + V  +  + I  ++ +    QG+    A    P +  +
Sbjct: 50  ELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D ++  K  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ +NL D +  +   G   IG   D   K L    K D +AL++G EG G+ P+ Q+  
Sbjct: 164 IQ-ANLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|311746389|ref|ZP_07720174.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
 gi|126575275|gb|EAZ79607.1| TrmH family RNA methyltransferase [Algoriphagus sp. PR1]
          Length = 258

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 13/247 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102
            E  F++G   V  A+ +  +++ ++L  K   N L +        +  PV  VP   ++
Sbjct: 15  TEKDFIFGTRAVMEAI-HAGKEMDKVLVQKELNNDLIKELLQVCKANAVPVVRVPDAKLN 73

Query: 103 KIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K   HQG+    + +   +LD       +V  S L+++LD + D  N GAI RSA 
Sbjct: 74  RVTRK--NHQGVVAYISSIEYASLDHVIESCFSVGKSPLVLILDRITDVRNFGAIARSAE 131

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D I+   + S   ++   K+++GAL  +P +R+ NL    + +   G   + ++  
Sbjct: 132 CAGIDAIVIPSKGSAQINSDAVKTSAGALNFLPVVRVKNLFYTCRDLQKMGLTLVAITEK 191

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S K + +      +A+I+G+E  G+  +    A    ++ M G I++LNVS +A VA+Y 
Sbjct: 192 SDKDMYEADFASPVAMIMGSEEDGISNELMGIADEKVNIPMLGKIESLNVSVSAGVAIYE 251

Query: 276 TQNHFAK 282
                 K
Sbjct: 252 AMRQRRK 258


>gi|157364334|ref|YP_001471101.1| RNA methyltransferase [Thermotoga lettingae TMO]
 gi|157314938|gb|ABV34037.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga lettingae
           TMO]
          Length = 233

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 113/237 (47%), Gaps = 8/237 (3%)

Query: 49  LFLYGVHTVSA--ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + +YG   +     +  P +KI+   +       ++      + +       + ++K+ G
Sbjct: 1   MIVYGKSVLDEIVRIRYPVKKIYLRESNNEKFQEIEEILK-KNGYHYIKTSAKHLEKLCG 59

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +E   QG+ ++     +   +   +   +++LDH+ DPHN+GAI+R+ V      I+ TK
Sbjct: 60  EEKN-QGIVIDLDFNYAD--ETYLDGDFIVLLDHIVDPHNLGAIIRTCVGAGVSAIVITK 116

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             S   +  + K ++G +  IP + ++N+   ++K+ + G+   G   + K  L +E   
Sbjct: 117 DRSAKITPAVVKVSAGTVFRIPVVIVTNIVYTIEKLKNKGYWVYGADMNGKN-LYEEGFI 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
             +A++ G EG+GL    +E    +  + M   I +LNVS +A + L+  ++  F K
Sbjct: 176 SPVAIVFGNEGEGLSRLVKERCDQLISIPMRSKIDSLNVSVSAGIILFEISRKCFMK 232


>gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437]
          Length = 263

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 118/269 (43%), Gaps = 12/269 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I  +  +   K++R    ++K+ +     +   +  ++ + G   +  A      ++  
Sbjct: 2   EIHQITSARNEKVKR----WRKLST----RKGREEFGSILIEGEKLLKEA-ARAGWQVRS 52

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           ++ +   +  L+ D +      V  + P T  ++V  +   QG+A E     +     +R
Sbjct: 53  VIVSDEGIRGLE-DLSYLDGVSVYALYPSTFAQLVDTQ-TPQGIAAEVVVPENKEGYRIR 110

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             + +++LD + DP N+G ILR+A A     +          +  + +SA G+L      
Sbjct: 111 GEEPVLLLDAIRDPGNLGTILRTAEAAGVGDVWLGAGTVDPFNPKVVRSAMGSLFRTRIR 170

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R+ +L +A+ ++   G+  +G S  +++         + A++LG EGKG+  +       
Sbjct: 171 RV-DLREAIPELKKQGYWVVGTSPRAERAHFDCHYPKQTAILLGNEGKGISAEIDSLVDD 229

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + MPG +++LNVS  A + L+     
Sbjct: 230 RVKIPMPGQVESLNVSVTAGILLFELLRQ 258


>gi|241668957|ref|ZP_04756535.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877489|ref|ZP_05250199.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843510|gb|EET21924.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 247

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 120/243 (49%), Gaps = 10/243 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++          +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIESIIAKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + + N      +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAIEINDFKTYSENDIENLIPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWVIGLAGEANDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 FAK 282
             +
Sbjct: 244 RTQ 246


>gi|239942333|ref|ZP_04694270.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
           11379]
 gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 318

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 13/246 (5%)

Query: 48  NLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +  + G + V  AL +  P+  ++  Q +     +  +   A       +   P   +D+
Sbjct: 74  SEMVVGRNPVYEALRDGVPAVTLYVQQYIDNDERVRDVLKLAGDRGNINLMEAPRPELDR 133

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQGL L+  P      D +           L++ LD V DP N+GAI+RS  A
Sbjct: 134 MT-NGLNHQGLVLQVPPYEYAHPDDLLAAADDNHEDPLIVALDGVTDPRNLGAIVRSVSA 192

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D 
Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252

Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  +E  E  +  + +++G+EGKGL     ET      + MPG  ++LN   AA + LY 
Sbjct: 253 EHTVEDLEELDGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312

Query: 276 TQNHFA 281
                A
Sbjct: 313 VARRRA 318


>gi|254830028|ref|ZP_05234683.1| rRNA methylase [Listeria monocytogenes 10403S]
          Length = 252

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 69/270 (25%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +       +W   L   + V  +  + I  ++ +    QG+    A    P +  +
Sbjct: 50  ELLVSSGVSVPEEW---LKDDYDVFEISTE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D ++  K  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ +NL D +  +   G   IG   D   K L    K D +AL++G EG G+ P+ Q+  
Sbjct: 164 IQ-ANLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|146296777|ref|YP_001180548.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410353|gb|ABP67357.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 271

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 120/285 (42%), Gaps = 28/285 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           + LI  K++E +  LK  H  K                   H  + +   + GV  V  A
Sbjct: 7   IELIKSKENECVKRLKKLHDKK-------------------HREEFKVFLVEGVKAVKEA 47

Query: 61  LNNPSRKIFQLLATKNALARLDW-------DANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           L+     I  L+ ++ A  + +          N      +  VP +  + I       QG
Sbjct: 48  LDYAIEDINLLIFSQEASKKYEEFFSRCISLLNSGKLKRIVQVPEKIFEHI-STTTTPQG 106

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +  E +      LD ++    ++V+D V DP N+G I+R A AF  + +IT        +
Sbjct: 107 VLAECS-FFDKELDVLKKHNRVVVIDSVQDPGNLGTIIRCADAFGFECVITVNGTVDVYN 165

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             + +SA G++ H+  +R     + L+ ++  GF     +      + +   +D+ A+++
Sbjct: 166 PKVVRSAMGSMFHVDVVRERKKEEVLEALNKRGFALYVTTPYGDVDISKLSVDDRFAIVI 225

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G E KG+     E AT    + MPG  ++LN + AAA+ LY  + 
Sbjct: 226 GNESKGVDVAFLENATKKVKISMPGKAESLNSAVAAAIVLYELRK 270


>gi|255014012|ref|ZP_05286138.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|256839648|ref|ZP_05545157.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|298375345|ref|ZP_06985302.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_19]
 gi|256738578|gb|EEU51903.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|298267845|gb|EFI09501.1| RNA methyltransferase, TrmH family, group 3 [Bacteroides sp.
           3_1_19]
          Length = 248

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            EN  ++G+  V  A+      + ++L  ++    L++  ++       PV+ VP + +D
Sbjct: 2   KENEMVFGIRAVIEAIQADKE-VDKILVKRDLQGDLSKELFEVLRGREIPVQRVPAERLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K   HQG+    + +   +L+ +            +++LD V D  N GAI R+  
Sbjct: 61  RLTRK--NHQGVIAFMSAVTYQSLEDIIPFVYEQGKDPFIVLLDGVTDVRNFGAIARTCE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D I+   + S S +A   K+++GAL  +P  +  ++  A++ +   G +    S  
Sbjct: 119 CAGVDTIVIPAKGSVSVNADAIKTSAGALHVLPVCKEKSINQAIRFLQQSGVKVFAASEK 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +          +A+++GAE  G+ P+      +M  +   G I +LNVS A ++ +Y 
Sbjct: 179 AAENYTAVKYEGPVAIVMGAEDTGVSPENLRICDNMVKIPQFGTIGSLNVSVATSILVYE 238

Query: 276 TQNHF 280
                
Sbjct: 239 VVRQR 243


>gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 315

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 26/286 (9%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN--------LFLYGVHTVSAALNN--PSRK 67
           +  A+ R  H+ Y+  Q   + +   S             F+ G ++V  AL    P++ 
Sbjct: 24  TPKAEDRPYHKAYRAKQLSERSAAKRSTGRQADRIKVNAEFVTGRNSVVEALRAGIPAKA 83

Query: 68  IFQLL-ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           +   +    +   R           P+       +D++    A+HQG+AL+  P      
Sbjct: 84  LHVAIRIDVDDRVRESLKLAAEQGIPLMEASKPELDRMTDA-AIHQGMALQIPPYEYKDA 142

Query: 127 DAV-------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
             +             +   L + LD + DP N+GAI+RSA AF  DG+I  +R S   +
Sbjct: 143 VQLATKAIKDFDKGYTKTQPLFLALDGITDPRNLGAIVRSASAFGADGVIIPERRSVGMT 202

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALI 232
           A   K+++GA   +P  + +NLT AL+++ + G   IGL +     L   E+    + ++
Sbjct: 203 ASAWKTSAGAAVRVPVAKCNNLTSALKEIKAAGIFVIGLDAGGDMDLPNFELATGPLCIV 262

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +G+EGKGL    +E   ++  + +   +++LN S A  ++LY    
Sbjct: 263 VGSEGKGLSRLVRENCDAIVSIPIDSAMESLNASMAVGISLYEVSR 308


>gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM
           2032]
 gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus
           propionicus DSM 2032]
          Length = 269

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 21/270 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS-RKIFQLLATKN-ALARL 81
           RR     K  + F      + +P    L+G + V   L       I ++L  K  A  RL
Sbjct: 5   RRESTVTKPARPFA-----SDEPSEDLLWGFNAVWETLQQEGCGGISEILVQKGKAGPRL 59

Query: 82  D--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------R 130
               D    H   V+ V    +   V K   HQG+    +     +L+ +          
Sbjct: 60  QQIIDHAKSHAIAVRFVDGARMG--VPKNCRHQGVVARQSEARLLSLEDLLAGITDEEQT 117

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
               ++VLD + DP N+G+ILRSA+A     +I T+  S   +  +A++++GA+ H+   
Sbjct: 118 TQARILVLDSLQDPRNVGSILRSALAAGFSRVILTRERSVPLTGTVARTSAGAVSHLRLC 177

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++ NL DAL ++   GF   G  +++   P+     +  I L++G+EGKG+RP  ++   
Sbjct: 178 QVVNLVDALNRLKEQGFWIFGAIAEANAAPIYTTDFSGPICLVIGSEGKGIRPLVRKQCD 237

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  + M     +LN S AAAV ++     
Sbjct: 238 VLVTIPMQASFNSLNASVAAAVIMFEIARR 267


>gi|218261847|ref|ZP_03476542.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223738|gb|EEC96388.1| hypothetical protein PRABACTJOHN_02213 [Parabacteroides johnsonii
           DSM 18315]
          Length = 249

 Score =  222 bits (567), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102
            EN  ++G+  V  A+      I ++L  +     L+R  ++       PV+ VP + +D
Sbjct: 2   KENEMVFGIRAVIEAIQADKE-IDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K   HQG+      +    L+ +         +  +++LD V D  N GAI R+  
Sbjct: 61  RLTRK--NHQGVIAFIPAVTYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D I+   R S + +A   K+++GAL  +P  +  ++T+A++ + + G +    S  
Sbjct: 119 CAGVDAIVIPSRGSVTVNADAIKTSAGALHVLPVCKEKSITEAIRFLQASGVKVYAASEK 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +       +  +A+++GAE  G+         SM  +   G I +LNVS A+++ +Y 
Sbjct: 179 AFENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILVYE 238

Query: 276 TQNHF 280
                
Sbjct: 239 VVRQR 243


>gi|139438525|ref|ZP_01772041.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
           25986]
 gi|133776064|gb|EBA39884.1| Hypothetical protein COLAER_01034 [Collinsella aerofaciens ATCC
           25986]
          Length = 302

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 11/266 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALAR 80
           +  RD  +     +   +   P+  F+ G    + AL         L+A       AL+R
Sbjct: 32  KGQRDRTQAARPQRNRDNVQAPKGEFIEGRRAAAEALRTGFPVKCALIAEGGERDAALSR 91

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLL 135
           L  D N      +K VP   +D +      HQG+ALE        +  +         L+
Sbjct: 92  LVDDLNAA-GVRIKYVPRAQLDALSS-HGAHQGIALEVGNFPYADVADILDRAGDGPALV 149

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLDHV D  N GAI+RSA      G+I   + +   +    K+++GA+ H+P  ++ N+
Sbjct: 150 VVLDHVTDDGNFGAIVRSAEVVGAAGVIIANKRAAGVTVGSYKTSAGAVMHLPIAQVPNI 209

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             AL  + + GF   G S  ++          ++AL++G+EG G+     E    +  L 
Sbjct: 210 ARALDDLKAAGFWVSGASERAEGSCWDAPFEGRVALVMGSEGDGISRLVLEKCDFLTKLP 269

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
             G+ ++LNV+ A     +      A
Sbjct: 270 QRGMTESLNVAQATTALCFEWLRRNA 295


>gi|220911631|ref|YP_002486940.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           chlorophenolicus A6]
 gi|219858509|gb|ACL38851.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           chlorophenolicus A6]
          Length = 329

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 128/301 (42%), Gaps = 24/301 (7%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKK----MQSFNQKSRHTSQPENLFLYGVHTV 57
              + K  ++ +    +H AK        K+      +   KS    +     + G ++V
Sbjct: 30  KGPTPKAEDRPYH--KAHKAKQLSERSAAKRNPGARSAGAGKSGPKGRATEEVVTGRNSV 87

Query: 58  SAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
             AL    P++ +   +  + +   +           P+       +D++   +AVHQGL
Sbjct: 88  VEALRAGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKPELDRMTD-DAVHQGL 146

Query: 115 ALETAPLLSPTLDAVR-------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            L+  P        +              N+ L + LD + DP N+GAI+RS  AFS  G
Sbjct: 147 VLQIPPYDYADAYELAEETVEKWKKGHISNAPLFVALDGITDPRNLGAIIRSVSAFSGHG 206

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  +R S   +A   K+++GA   +P  R SNL  AL++  + G   +GL  D    L 
Sbjct: 207 VIVPERRSVGVTASAWKTSAGAAVRVPVARASNLNSALKQFKNMGIFVLGLDGDGDVSLP 266

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +  + + +++G+EGKGL    +E    +  + +   +++LN S A  + LY      
Sbjct: 267 DLSLATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGITLYEVSRQR 326

Query: 281 A 281
           A
Sbjct: 327 A 327


>gi|322373861|ref|ZP_08048396.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
 gi|321277233|gb|EFX54303.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
          Length = 245

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 121/275 (44%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + +              K +Q  ++K+       +  L G H    A
Sbjct: 1   MEIIQSKQNASIKTAR--------------KLLQGKHRKT-------SYLLEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                 +I Q+   +    R+   +       VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGAEILQVFVLEEMADRVVDVSK------VKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +++    LL  L+ V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  ESQSLPESLSGKYLL--LEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKG 239
            G+  H+P  R   + + ++     GF  +  +  +     + +K D   AL++G EG+G
Sbjct: 150 QGSHFHLPIYRGP-IFEMIETCQKQGFPILATTLSTVSVDYRAVKTDDNFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 209 ISQDMAESANQLVHINMPGRAESLNVAVAAGILMF 243


>gi|302336402|ref|YP_003801609.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
           7084]
 gi|301320242|gb|ADK68729.1| RNA methyltransferase, TrmH family, group 3 [Olsenella uli DSM
           7084]
          Length = 299

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 117/284 (41%), Gaps = 11/284 (3%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-FLYGVHTVSAALNN- 63
           K++     S   SH A             +  +++R  + P     + G    + AL   
Sbjct: 4   KRQPRGRASSPSSHKASPSAPTGGRHGGGTSGRRTRQATTPSREGLIEGRRACAEALEGG 63

Query: 64  -PSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
            P R+     A+  A   L            PV+ V    +D +      HQG+ +E++P
Sbjct: 64  VPLRRALVADASGGADQTLARLVERLSEAQVPVERVSRARLDSLSS-HGAHQGIIVESSP 122

Query: 121 LLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
               TL  V         L+++LDHV D  N GAI+RSA      GI+     S S    
Sbjct: 123 FEYATLGDVISSAGSGDALVVLLDHVTDEGNFGAIVRSAEVVGASGIVIANARSASVGVG 182

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
             K+++GA+ H+P  R+ NL  AL ++   GF     +  +++         ++ L++G+
Sbjct: 183 AYKTSAGAVMHLPIARVPNLATALDRLKEAGFWVAAATEHAEQDAWSAPLGGRLCLVMGS 242

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           EG G+    +E       L   G I++LNV+ AA V  Y     
Sbjct: 243 EGGGISRLVRERCDFGCRLPQRGRIESLNVAQAATVLCYEWLRR 286


>gi|257064637|ref|YP_003144309.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
           20476]
 gi|256792290|gb|ACV22960.1| rRNA methylase, putative, group 3 [Slackia heliotrinireducens DSM
           20476]
          Length = 256

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 19/247 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103
            ++ G H V  AL      +  +L   N L R    A++      +  PVK V  + +D 
Sbjct: 3   DYIEGKHPVIEALR-AQMPLRCVLMADN-LKRDGQVADILRKANKYNVPVKRVSRKELDA 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVNDPHNIGAILR 152
              +   HQG+  E  P    ++  +            N+ L++VLDH+ D  N+GAI R
Sbjct: 61  K-SERGSHQGVMAEALPFKYASMTDIVKASADHAKENNNAALVIVLDHITDAGNLGAIAR 119

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA      G+I   + S   +A   KS++GA+ H+P  +++NLT AL ++   GF   G 
Sbjct: 120 SAEVVGASGLIIPNKRSAQVTAATYKSSAGAINHLPVAQVANLTGALDRLKKAGFWVAGA 179

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S  ++  + +     KIAL++G E +G+   T E+   +  L   G++ +LNV+ A+   
Sbjct: 180 SEHAQHTVWEAPLYGKIALVMGNEQEGISRLTLESCDFLVKLPQAGMVGSLNVAQASTAV 239

Query: 273 LYITQNH 279
           +Y     
Sbjct: 240 MYEWLRQ 246


>gi|305665147|ref|YP_003861434.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
 gi|88709899|gb|EAR02131.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
          Length = 255

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  V  A+N+     K+F     K  L R               VP + ++++    
Sbjct: 17  IYGIRAVIEAINSNETIDKVFVQKGLKGDLFRELEGLLRKKGIAAAYVPIEKLNRLSKN- 75

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+   T++++        N+ L ++LD ++D  N GAI+R+A     DG
Sbjct: 76  -NHQGVIANISPIAFYTIESLVEKVLASNNTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+ +   +A   K+++GA   +P  ++ ++ DA+  + + G      +  +   + 
Sbjct: 135 IIIPKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGISVTVATEKTNNTIY 194

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  A+++G+E +G+ P   + A  +A L + G I++LNVS A AV LY      
Sbjct: 195 DVPFKEPCAIVMGSEDRGVSPSVIKAADQLAKLPLLGEIESLNVSVACAVFLYEVVRQR 253


>gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
           Ellin185]
 gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
           Ellin185]
          Length = 324

 Score =  222 bits (566), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 125/279 (44%), Gaps = 20/279 (7%)

Query: 18  SHYAKLRRNHRDYKKMQ----------SFNQKSRHTSQPENLFLYGVHTVSAALN--NPS 65
           +  A+ R NH+ YK  Q          +         +  +  + G ++V  AL    P+
Sbjct: 38  TPRAEERPNHKAYKSAQRSGAAKNAPNARRSSGARRDRTSSEIIAGRNSVLEALRVGVPA 97

Query: 66  RKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS- 123
             ++       +   R            +   P   +D++    AVHQGLAL+  P    
Sbjct: 98  ATLYVASRIDSDDRVRETLKIAQEQGVAMLETPRGELDRLTD-GAVHQGLALQVPPYEYA 156

Query: 124 ---PTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                +D  +  + L++ LD + DP N+GAI+RS  AF   G++  +R S   +A   K+
Sbjct: 157 HPSDLIDPELPGTPLVVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSAGMTASAWKT 216

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGK 238
           ++GA   IP  + SNLT AL++    GF  IGL  D    L   E+ +  + +++G+EGK
Sbjct: 217 SAGAAARIPVAQASNLTAALKEFKKAGFFVIGLDMDGDVDLPGLELADRPLVVVVGSEGK 276

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL     ET   +  + M   +++LN   A +V LY   
Sbjct: 277 GLSRLVSETCDQIVSVPMSSAVESLNAGIATSVTLYQVA 315


>gi|33519562|ref|NP_878394.1| tRNA/rRNA methyltransferase [Candidatus Blochmannia floridanus]
 gi|52783302|sp|Q7VQP0|RLMB_BLOFL RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|33517225|emb|CAD83607.1| probable tRNA/rRNA methyltransferase [Candidatus Blochmannia
           floridanus]
          Length = 254

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 118/245 (48%), Gaps = 14/245 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHP--FPVKTVPPQTIDKI 104
           +  +YG+HTV + +N    +I  +    N    RL             ++    + ++ I
Sbjct: 2   SELVYGIHTVESIVNQSPNRILIVYIVSNPRDLRLKSLIYRIRKMNINIQECTRRVLN-I 60

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVA 156
              ++ HQG+  E  P+ +   D + +          LL+VLD + DPHN+GA +RSA A
Sbjct: 61  KSMKSAHQGIIAEVIPMPALNEDYLLHFLKTKNNIIPLLLVLDGITDPHNLGACIRSADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                II  +  S + +A + K ASG+ + +P++R++NL+  L+ +  +    +G    S
Sbjct: 121 AGVHMIIVPRDRSANVNATVRKVASGSSDRVPFVRVTNLSRTLKLLKKYNIYIVGSVLRS 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYI 275
            + L      D IAL++G+E  G+R  T+E    + H+  +   + +LNVS A  + L+ 
Sbjct: 181 NQILFNTRLIDPIALVMGSESSGIRRLTRENCDKLVHIPTLQSTV-SLNVSVATGIFLFE 239

Query: 276 TQNHF 280
           T    
Sbjct: 240 TVRQR 244


>gi|118497130|ref|YP_898180.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp. novicida
           U112]
 gi|194323428|ref|ZP_03057205.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
           subsp. novicida FTE]
 gi|118423036|gb|ABK89426.1| tRNA/rRNA methyltransferase [Francisella novicida U112]
 gi|194322283|gb|EDX19764.1| RNA methyltransferase, TrmH family, group 3 [Francisella tularensis
           subsp. novicida FTE]
          Length = 248

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNASHKIEGIISKAESKGLKVTYIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
          Length = 325

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 111/252 (44%), Gaps = 12/252 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTV 96
            R         + G + V   L          +    +A  R+    +L       +  V
Sbjct: 71  GRRGDGEGPETVLGRNPVVECLRAGVPSTALHVATGMSADERVAEAVSLAAEQGISILEV 130

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGA 149
           P   +D++ G  A+HQGLAL+  P      D +           L + LD V DP N+GA
Sbjct: 131 PRNDLDRLTG-GALHQGLALQVPPYSYAHPDELLEAAADSGRPALTVALDGVTDPRNLGA 189

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RS  AF   G++  +R +   +AV  ++++G    +P  R +NLT  L++  S G   
Sbjct: 190 VVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVARATNLTRTLREYASAGLMV 249

Query: 210 IGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +GL++D    L++       +AL+ G+EGKGL    +ET      + + G +++LN S A
Sbjct: 250 VGLAADGDVSLDEFDLATGPLALVTGSEGKGLSRLVRETCDLTVSIPLAGRVESLNASVA 309

Query: 269 AAVALYITQNHF 280
             V L       
Sbjct: 310 TGVVLAEVARRR 321


>gi|254372498|ref|ZP_04987987.1| hypothetical protein FTCG_00059 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570225|gb|EDN35879.1| hypothetical protein FTCG_00059 [Francisella novicida GA99-3549]
          Length = 248

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|326800453|ref|YP_004318272.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
           21]
 gi|326551217|gb|ADZ79602.1| RNA methyltransferase, TrmH family, group 3 [Sphingobacterium sp.
           21]
          Length = 241

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 13/241 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            ++G+  V  A+++    I  L   +     L +   D         + VP + +D+I  
Sbjct: 1   MVFGIRAVIEAIDSGKE-IESLFIQRGLTGELFKELKDVLRNRNIGYQQVPIEKLDRITR 59

Query: 107 KEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K   HQG+    +P+    ++ V           L+++LD + D  N GAI R+A     
Sbjct: 60  K--NHQGVIAVISPITYQKIEDVIPTIYEEGKVPLILILDGITDVRNFGAIARTAACAGV 117

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++   + S   +    K+++GAL  I   R  +LT  ++ +   G Q +  +  +   
Sbjct: 118 DALVVPNKGSAEINPDAIKTSAGALYKIAVCRHESLTQVIKFLQESGLQVVACTEKTGDT 177

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + +       A+++GAE  G+       A  +A + M G I +LNVS +A V +Y     
Sbjct: 178 IYKPDFKSPTAIVMGAEDTGISDSIIRNADYLAKIPMFGDIASLNVSVSAGVIIYEAIRQ 237

Query: 280 F 280
            
Sbjct: 238 R 238


>gi|77918299|ref|YP_356114.1| rRNA methyltranferase [Pelobacter carbinolicus DSM 2380]
 gi|77544382|gb|ABA87944.1| rRNA methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 246

 Score =  221 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 12/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDW--DANLPHPFPVKTVPPQTIDKIVG 106
            +YGV+ V  AL +  RK  +LL    A + RL    +A       ++++  + +D +  
Sbjct: 4   LIYGVNPVLEALKSRQRKPLELLVLHGAESSRLSAVCEAARARRVAIRSLDRRELDALA- 62

Query: 107 KEAVHQGLALETAPL----LSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSC 159
           + A HQG+AL         L   LD  RN+    +++VLD + DPHN+GA+ RSA A  C
Sbjct: 63  EGARHQGVALRLESQSVIALEDLLDLWRNAGGKGVILVLDGITDPHNLGALARSAEAVGC 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKK 218
            GI+  K  S   +A   K+++GAL ++P  R++N+  +L+     GF   GL+ D   +
Sbjct: 123 QGIVLPKDRSCPITAAAEKASAGALAYLPVCRVTNVARSLEVFKQAGFWVYGLAGDAGSQ 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L        + L++G EGKGLR   ++   ++  + M G + +LN S A  VAL+    
Sbjct: 183 SLYDTDLRGNVVLVVGGEGKGLRDNVRKHCDALLAIPMRGQVSSLNASVAGGVALFEVLR 242

Query: 279 H 279
            
Sbjct: 243 Q 243


>gi|149177691|ref|ZP_01856292.1| YacO [Planctomyces maris DSM 8797]
 gi|148843509|gb|EDL57871.1| YacO [Planctomyces maris DSM 8797]
          Length = 261

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 114/242 (47%), Gaps = 12/242 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK----NALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +++G + V   L      +++L  +       + +L+  A      PV     + + +  
Sbjct: 22  WIWGRNAVRETLFAGFWPMYELHLSDHLKSEEIEQLEQQAARS-TIPVFISTDKELTQKC 80

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + + HQG+  + AP    +++        S L ++LD + DP N GAI+RSA     DG
Sbjct: 81  -RASDHQGMIAKMAPFPYTSIELFNQQEITSPLFLILDRIQDPFNFGAIIRSAEIMGADG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I +        ++++ ++++GA+ H+P ++ ++L    +     G   +G +  + + L 
Sbjct: 140 IFSGTHEQCEVTSLVCRTSAGAVNHVPLVQATDLVSLCRDWKQNGINIVGTAMQASEKLN 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279
                   A+I+G EG G+ P+ Q   T +  +   G  ++LNV+ +A++ LY    Q +
Sbjct: 200 DYNFQQPTAVIVGNEGTGISPELQAECTHLVRIPQQGKTESLNVAVSASILLYEASRQRN 259

Query: 280 FA 281
           F+
Sbjct: 260 FS 261


>gi|16803258|ref|NP_464743.1| hypothetical protein lmo1218 [Listeria monocytogenes EGD-e]
 gi|46907437|ref|YP_013826.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092017|ref|ZP_00229811.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
           H7858]
 gi|47095060|ref|ZP_00232673.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           1/2a F6854]
 gi|217964716|ref|YP_002350394.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
 gi|224499109|ref|ZP_03667458.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
           Finland 1988]
 gi|224502486|ref|ZP_03670793.1| rRNA methyltransferase, TrmH family protein [Listeria monocytogenes
           FSL R2-561]
 gi|226223818|ref|YP_002757925.1| rRNA methylase [Listeria monocytogenes Clip81459]
 gi|254823528|ref|ZP_05228529.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254852912|ref|ZP_05242260.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|254898621|ref|ZP_05258545.1| rRNA methylase [Listeria monocytogenes J0161]
 gi|254911890|ref|ZP_05261902.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254932904|ref|ZP_05266263.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|254936215|ref|ZP_05267912.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|254991828|ref|ZP_05274018.1| rRNA methylase [Listeria monocytogenes FSL J2-064]
 gi|255522191|ref|ZP_05389428.1| rRNA methylase [Listeria monocytogenes FSL J1-175]
 gi|284801538|ref|YP_003413403.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
 gi|284994680|ref|YP_003416448.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
 gi|300764367|ref|ZP_07074361.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|16410634|emb|CAC99296.1| lmo1218 [Listeria monocytogenes EGD-e]
 gi|46880705|gb|AAT04003.1| RNA methyltransferase, TrmH family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47016678|gb|EAL07598.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str.
           1/2a F6854]
 gi|47019733|gb|EAL10472.1| RNA methyltransferase, TrmH family [Listeria monocytogenes str. 4b
           H7858]
 gi|217333986|gb|ACK39780.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes HCC23]
 gi|225876280|emb|CAS04989.1| Putative rRNA methylase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258606248|gb|EEW18856.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|258608805|gb|EEW21413.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|284057100|gb|ADB68041.1| hypothetical protein LM5578_1291 [Listeria monocytogenes 08-5578]
 gi|284060147|gb|ADB71086.1| hypothetical protein LM5923_1244 [Listeria monocytogenes 08-5923]
 gi|293584458|gb|EFF96490.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293589848|gb|EFF98182.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293592748|gb|EFG00509.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|300515019|gb|EFK42072.1| TrmH family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|307570723|emb|CAR83902.1| rRNA methyltransferase, TrmH family [Listeria monocytogenes L99]
 gi|313609196|gb|EFR84870.1| RNA methyltransferase [Listeria monocytogenes FSL F2-208]
 gi|328466614|gb|EGF37749.1| RNA methyltransferase, TrmH family [Listeria monocytogenes 1816]
 gi|332311603|gb|EGJ24698.1| RNA methyltransferase [Listeria monocytogenes str. Scott A]
          Length = 252

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +       +W   L   + V  +  + I  ++ +    QG+    A    P +  +
Sbjct: 50  ELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D ++  K  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ ++L D +  +   G   IG   D   K L    K D +AL++G EG G+ P+ Q+  
Sbjct: 164 IQ-ADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|315302761|ref|ZP_07873535.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
 gi|313628869|gb|EFR97228.1| RNA methyltransferase [Listeria ivanovii FSL F6-596]
          Length = 252

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 71/270 (26%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  AL+     + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALHQDGL-VV 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +K+     +W       F + T     I   + +    QG+    A    P +  +
Sbjct: 50  ELLVSKDVSVPEEWLKGNYDVFEIST----EISHFISETMTEQGVFAVVA-TTEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D +I  +  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ +NL D +  +   G   IG   D+  K L    K D +ALI+G EGKG+  + Q   
Sbjct: 164 IQ-ANLFDWIANLEEEGVPVIGAVLDAQAKSLNDISKRDTLALIVGNEGKGISEELQARL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGKSESLNVAVAAGILLYGLRK 252


>gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125]
 gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125]
          Length = 251

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 101/235 (42%), Gaps = 8/235 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             Q     + G H V  AL +    I  +L T++      W  +      V  V  + + 
Sbjct: 24  RDQSGQFLIEGYHLVEEALKSTI-TIETILVTESVTLPTAWHVDERD---VILVSDRVMA 79

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +  +    QG+A        P+   +    + + +DHV DP N+G ++R+  A     +
Sbjct: 80  DLT-ETKTPQGIAAICHIPDEPSFQELEG--MFLCIDHVQDPGNVGTMIRTCDAAGMSAV 136

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I ++      ++ + +++ G++ H+P I+  +L   + +    G    G + +       
Sbjct: 137 IVSEGSVDIYNSKVVRASQGSIFHLPVIK-GDLHGWVDQFKEAGIPVFGTALEGGSTYTA 195

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + AL++G EG+G+ P+  + A    ++ + G  ++LNV+ A  + LY  +
Sbjct: 196 IEPQARFALLVGNEGEGVEPELLDKADQNLYIPLYGKAESLNVAVATGILLYYLR 250


>gi|294507468|ref|YP_003571526.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
 gi|294343796|emb|CBH24574.1| tRNA/rRNA methyltransferase [Salinibacter ruber M8]
          Length = 316

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 16/243 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L G   V  AL      I +++  ++   A              PV+ VP   + +    
Sbjct: 72  LIGRGPVLEALKRDDLGIEKVMLKQDVSGAQIGAIRSIADDRGTPVQYVPEARL-RHESD 130

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS------------QLLMVLDHVNDPHNIGAILRSAV 155
            A HQG+   TAP+    +DA+ +              +L+V+D V DP N GA+LRSAV
Sbjct: 131 GATHQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAV 190

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG+I   R     +A   K+++G    IP  R  +L   L ++   G+   G    
Sbjct: 191 AAGTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGT 250

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++ PL     +  +A++LG+EG+GL P+  E    +  + M G  ++LNVS A  + ++ 
Sbjct: 251 AETPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFE 310

Query: 276 TQN 278
              
Sbjct: 311 AAR 313


>gi|182437813|ref|YP_001825532.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
           griseus XylebKG-1]
 gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces cf.
           griseus XylebKG-1]
          Length = 318

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 13/246 (5%)

Query: 48  NLFLYGVHTVSAALNN--PSRKIF--QLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +  + G + V  AL +  P+  ++  Q +     +      A       +   P   +D+
Sbjct: 74  SEMVVGRNPVYEALRDGVPATTLYVQQYIDNDERVRDALKLAGERGNINLMEAPRPELDR 133

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQGL L+  P      + +           L++ LD V DP N+GAI+RS  A
Sbjct: 134 MT-NGLNHQGLVLQVPPYEYAHPEDLTAAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSA 192

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F   G++  +R +   +A   KS++G     P  R++NLT AL+     G   +GL++D 
Sbjct: 193 FGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADG 252

Query: 217 KKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  +E  E     + +++G+EGKGL     ET      + MPG  ++LN   AA + LY 
Sbjct: 253 EHTVEDLEELAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPGGAESLNAGVAAGIVLYE 312

Query: 276 TQNHFA 281
                 
Sbjct: 313 VARRRG 318


>gi|50955381|ref|YP_062669.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951863|gb|AAT89564.1| tRNA/rRNA methyltransferase protein [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 336

 Score =  221 bits (565), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 77/301 (25%), Positives = 132/301 (43%), Gaps = 23/301 (7%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQ--------SFNQKSRHTSQPENLFLYG 53
              + K  ++ + +  +H  K+ R     K+          ++    R  +  E+  + G
Sbjct: 35  KGPTPKAEDREYHV--AHKNKVLRERAAAKRGTGHDAAPRGAYGASRRAKTGDESEIVTG 92

Query: 54  VHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEA 109
            ++V  AL    P   ++ + A      R+    +L      PV  +    +D++ G++A
Sbjct: 93  RNSVLEALRARIPGTTLY-IAARVELDDRVKEILSLATGRAIPVLEIMRPELDRLAGRDA 151

Query: 110 VHQGLALETAPLLS----PTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+AL+  P         LD       + L + LD + DP N+GAI+RS  AF   G+
Sbjct: 152 VHQGVALKVPPYEYVHPGELLDRTLRNGETPLFVALDGITDPRNLGAIIRSTAAFGGQGV 211

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  +R S   +A   K+++GA    P    SNLT  L+     G   +GL      PL  
Sbjct: 212 IVPQRRSAGMTASAWKTSAGAAARTPVAMASNLTQTLKAFKQAGVFVLGLDGGGDTPLPG 271

Query: 223 EIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               D  + +++G+EGKG+     ET  ++  + +    ++LN   AA+V LY      A
Sbjct: 272 LSFADRPVVIVVGSEGKGISRLVAETCDAVVSIPIAATTESLNAGIAASVTLYEIAKLRA 331

Query: 282 K 282
           +
Sbjct: 332 Q 332


>gi|189346156|ref|YP_001942685.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
           DSM 245]
 gi|189340303|gb|ACD89706.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium limicola
           DSM 245]
          Length = 248

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 10/247 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPP 98
           +T Q EN+ +YG + V   L N    I ++     T +   +                  
Sbjct: 2   YTEQSENV-VYGRNAVLELLQNKPDTIEKIYFQFNTSHPKLKEILITARRQKVVTGKARL 60

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRS 153
           + +++I G  A HQG+    + +   ++D + +     + LL++L  + DPHNIGAI+R+
Sbjct: 61  EKLNQIAGT-AKHQGICALISTVTFYSIDDILDHPRNSAPLLVILQGLEDPHNIGAIIRT 119

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A + D ++  +      +A + K+++GAL H+   ++ +L   ++ +H  GF+     
Sbjct: 120 AEAAAADAVVLIEGRGAPVNAAVHKASAGALSHMRICKVKSLVRIMEYLHERGFRVYAAD 179

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D++            AL+LGAEG GL P+  +   S   + + G I++LNVS  A + L
Sbjct: 180 MDAELNYTDADLKGPTALVLGAEGSGLSPEAMKFCGSSVRIPIAGCIESLNVSVTAGILL 239

Query: 274 YITQNHF 280
           Y      
Sbjct: 240 YEAMRQR 246


>gi|149276383|ref|ZP_01882527.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
 gi|149232903|gb|EDM38278.1| putative tRNA:rRNA methyltransferase [Pedobacter sp. BAL39]
          Length = 255

 Score =  221 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 13/254 (5%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPV 93
           N +     +  N F++G+ +V  A+    + I  +   +     +  +          PV
Sbjct: 3   NSRRPARPKENNEFIFGIRSVIEAIK-AGKDIESIYIQRGLTGGIILELKALLKDVDAPV 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             VP + ++++  K   HQG+    + +    ++ +         + L+++LD + D  N
Sbjct: 62  HNVPVEKLNRMTQK--NHQGVIAVISSITFQKIEDIIPAVYEKGETPLILILDGITDVRN 119

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI R+A       I+   + S   +A   K+++GAL  IP  R  NL      +   G
Sbjct: 120 MGAIARTAACAGVHAIVVPTKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            Q +  +  +   +         A+++GAE +G+  +    A  +A + M G I +LNVS
Sbjct: 180 LQIVACTEKTNDLIYAPDYTTPTAIVMGAEDEGISNEIMRMANHLAKIPMIGEISSLNVS 239

Query: 267 NAAAVALYITQNHF 280
            +A V LY      
Sbjct: 240 VSAGVILYEAIRQR 253


>gi|325917513|ref|ZP_08179718.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536271|gb|EGD08062.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 249

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 122/245 (49%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   +DA +   L++VLD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVDAAQGRALVLVLDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGDIESLNVSVATGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|119386533|ref|YP_917588.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
 gi|119377128|gb|ABL71892.1| RNA methyltransferase, TrmH family, group 3 [Paracoccus
           denitrificans PD1222]
          Length = 265

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 94/230 (40%), Positives = 132/230 (57%), Gaps = 12/230 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E ++L+G+H V  AL NP R+  +L+ T+NAL RL     LP     + V  +T D+ V 
Sbjct: 27  ETVWLFGLHAVRDALANPRREKLRLVVTRNALDRLGP---LPPDLAHEIVDARTFDRAVP 83

Query: 107 --KEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              E+VHQG ALE  PL   +L  +        LL+ LD V DPHN+GAILRSA  F   
Sbjct: 84  LPAESVHQGAALEVRPLKWGSLVDLALSGPGRPLLVALDRVTDPHNVGAILRSAEVFGAR 143

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I   R+S  E+  LAK+ASGALE  PY+R++NL D L ++ S G+  +GL     + L
Sbjct: 144 AVIAPARHSAPETGALAKTASGALERQPYLRVTNLADTLIELQSMGYTVLGLDGTGDELL 203

Query: 221 EQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            + +++     I L+LGAEG GLR +T+ET   +  +       +LNVSN
Sbjct: 204 PEALRDLSGRAICLVLGAEGPGLRERTRETCDRILRIPFAADFGSLNVSN 253


>gi|116872590|ref|YP_849371.1| rRNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741468|emb|CAK20592.1| rRNA methyltransferase, TrmH family [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 252

 Score =  221 bits (564), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2   EQIQSIKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +       +W   L   + V  +  + I  ++ +    QG+      +  P +  +
Sbjct: 50  ELLVSSGVSVPEEW---LKGDYDVFEISAE-ISHLISETMTEQGVFAVVT-ISEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D +I  +  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVILGRGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ ++L D +  +   G   IG   D   K L    K + +AL++G EG G+ P+ QE  
Sbjct: 164 IQ-ADLFDWIANLEEEGVPVIGAVLDEQAKSLNDMPKRETLALMVGNEGNGISPELQERL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|208778923|ref|ZP_03246269.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
           FTG]
 gi|208744723|gb|EDZ91021.1| RNA methyltransferase, TrmH family, group 3 [Francisella novicida
           FTG]
          Length = 248

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|254373959|ref|ZP_04989441.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
 gi|151571679|gb|EDN37333.1| hypothetical protein FTDG_00115 [Francisella novicida GA99-3548]
          Length = 248

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLADSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETLRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG6]
 gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6]
          Length = 250

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 113/248 (45%), Gaps = 15/248 (6%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-----PFPVKTVPPQTID 102
              LYG + V  AL    R I +L+ + N +      A +         PV+ V  Q +D
Sbjct: 2   TELLYGRNAVREALRANRRTIKRLVVS-NGVQETGIIAEIIKLAEQIGVPVQRVERQQLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           K + ++A HQG+ LET       L+             LL++LDH+ DP NIG +LR+A 
Sbjct: 61  KQL-RDANHQGVMLETNEYPYVELEDCLAYAAERNEPPLLLLLDHLQDPQNIGTLLRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                G+    R +   +  +  ++SGA EH+  + + NL   +  +   G   +GL  D
Sbjct: 120 VVGVHGVAIPGRRAAEITPAVVNASSGATEHLRVVLVGNLAQTIATLQREGVWVVGLEDD 179

Query: 216 S-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + L+    N  +AL++GAEG GL    +E    +  L M G I +LN S A ++ LY
Sbjct: 180 EQAQDLDAADLNLPLALVVGAEGPGLARLVRERCDFLVRLPMAGQIASLNASVAGSITLY 239

Query: 275 ITQNHFAK 282
                  K
Sbjct: 240 NAWRQRKK 247


>gi|153853513|ref|ZP_01994893.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
 gi|149753668|gb|EDM63599.1| hypothetical protein DORLON_00882 [Dorea longicatena DSM 13814]
          Length = 263

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 110/262 (41%), Gaps = 10/262 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--- 82
           ++   K++ +  +K +   +     + G+         P  K+ ++  +++   +     
Sbjct: 6   SNARIKRLVNLKKKRKLRDEESVFLVEGIRMFREV---PLDKLKEVYVSESFYKKEKDTV 62

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDH 140
            +        V+ +               QG+ L     ++  ++ + ++   L+MVLDH
Sbjct: 63  KEVLKDSKVRVEELTDTVFAH-ASDTKTPQGI-LCVVEQMNHEINELTSAKCPLIMVLDH 120

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G ILR+A      GI+  +      +    +S  G++  +P++ + +L   +Q
Sbjct: 121 LQDPGNLGTILRTAEGAGVTGILMDRECVDVYNPKTIRSTMGSIYRMPFVYVEDLGKGIQ 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   G  T     +     ++E   +  A ++G EG GLR +  + A     + M G +
Sbjct: 181 DLKDKGITTYAAHLEGTNSYDEEDLTNPCAFLIGNEGNGLRREIADMADCYVKIPMLGQV 240

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LN + A++V ++       K
Sbjct: 241 ESLNAAIASSVLMFEAARQRRK 262


>gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2]
          Length = 311

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 113/253 (44%), Gaps = 12/253 (4%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPV 93
           NQ  R   +     + G ++V  AL    P+  ++       +   R            +
Sbjct: 56  NQARRRKKENGPNMVAGRNSVLEALREDVPATAMYVAGRIDSDDRVREAITLATKRGISM 115

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
                  +D++   +A+HQG+AL+  P        +         + LL+ LD + DP N
Sbjct: 116 LEASKPDLDRLTD-DAIHQGIALQIPPYDYAEPRDLLEVAADRAEAPLLVALDGITDPRN 174

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+RSA AF   G+I  +R + S +A   K+++GA   I   ++ NL  A+ ++    
Sbjct: 175 LGAIVRSAAAFGGHGVIIPERRAASMTAAAWKTSAGAAARIKVAQVVNLARAIDELKKQN 234

Query: 207 FQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              +GL  D +  L +   + D + +++G+EGKG+     +    +  + +    ++LN 
Sbjct: 235 VFVVGLDMDGEVELPELTFSRDPLCIVVGSEGKGISRLIADKCDQIVSIPIAATTESLNA 294

Query: 266 SNAAAVALYITQN 278
             AAAV+LY    
Sbjct: 295 GIAAAVSLYEVAR 307


>gi|322517494|ref|ZP_08070367.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123976|gb|EFX95535.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 245

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + +      L+R HR                   +  L G H    A
Sbjct: 1   MEIIQSKQNASIKTARKL----LQRKHR-----------------KTSYLLEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I Q+   +    R      + +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGADILQIFVLEEMADR------VANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +++    LL  L+ V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QSQALPESLSGKYLL--LEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R   + + ++         +  +        + +K     AL++G EG+G
Sbjct: 150 QGSHFHLPIYRGP-ILEMVETCKKHDLTVLATTLSEVSVDYKAVKTDGNFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 209 ISKEMAESADQLVHINMPGQAESLNVAVAAGIIMF 243


>gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 256

 Score =  221 bits (564), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 111/251 (44%), Gaps = 8/251 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++  ++K ++  + +  F+ G ++V  AL + S +I  +L +++    LD + +   
Sbjct: 11  IKDIKKLSEK-KYRYEKKLFFVEGKNSVFEALKS-SFEIKYVLVSEDCDIDLDVEKDR-- 66

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +  V      KI       Q +            D ++   L ++LD V DP N+G 
Sbjct: 67  ---LIFVDKGIFKKISDT-VTPQMIMAVVKMPDYNVNDLIKEDGLYIILDEVQDPGNLGT 122

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA AF+ D + T        +    +S  G++ H+P +    +    + +   G + 
Sbjct: 123 IIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFHLPVVNDVPVDKLFEALKRNGVRV 182

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  +  ++K +     +  IALI G E +G+             + M G+ ++LNVS AA
Sbjct: 183 LSTNLKAEKYIYDCDISKNIALIFGNESRGVNKSLDIYVDGSFKIPMDGMAESLNVSVAA 242

Query: 270 AVALYITQNHF 280
           ++ LY +Q   
Sbjct: 243 SICLYESQRQR 253


>gi|288574821|ref|ZP_06393178.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570562|gb|EFC92119.1| RNA methyltransferase, TrmH family, group 3 [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 269

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 10/260 (3%)

Query: 28  RDYKKMQSFNQKSRH---TSQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARL 81
           +D +K++S   K R        +    +G + V + L    +  +KI+     +      
Sbjct: 5   KDKRKVRSDRSKGRTTSSRRSEDKDLCWGRNAVISMLETVPSACKKIYLATGIQTTFRDD 64

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET---APLLSPTLDAVRNSQLLMVL 138
                  +   V       +D+I G E  HQG+        P         +   LL+ +
Sbjct: 65  LLSLAGKNAVEVTEANGSYLDEITGGEK-HQGIVANIDLPKPRDLSQFSPKKGPSLLLAM 123

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           DHV DPHN GA++R+A A    G+I   R S   +  + K+++GA   +P   ++NL  +
Sbjct: 124 DHVKDPHNFGAMIRTAEAVGALGVIYPSRRSVGVTGTVIKTSAGAAFRVPLYEVTNLVRS 183

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ +   G+  +GL  +  + +      DK+ L++G+EG+GL   + E    +  + M G
Sbjct: 184 MEILKKEGYWVVGLDHEEPRDIWSSPLPDKLVLMVGSEGEGLSRLSSERCDDLRRIPMVG 243

Query: 259 IIKALNVSNAAAVALYITQN 278
              +LN S AAA+ ++  + 
Sbjct: 244 KTGSLNASVAAALGMFEWRR 263


>gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
           bacterium Broad-1]
 gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
           bacterium Broad-1]
          Length = 318

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 108/254 (42%), Gaps = 18/254 (7%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA----RLDWDANLPHPFPVKT 95
            R  +  +  ++ G ++V  AL      +  +   + A      R  +         +  
Sbjct: 63  PRKRAAGDAEWIIGRNSVVEALR-EDVPVNGIYVAEGAERDGRLREAFLLASEKGISLLE 121

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIG 148
           V    +D++ G    HQGLA           D        +    L++ LD V DP N+G
Sbjct: 122 VTKVELDRLTGFNG-HQGLAARIPAYEYAHADDLIDRAAEIGEKPLIVALDQVTDPRNLG 180

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA AF   G++  +R +   +A   K+++GA   IP  +  NLT  L+     G  
Sbjct: 181 AIVRSAAAFGAHGVVIPERRAAGMTAAAWKTSAGAASRIPVAQTVNLTRQLKAYQDAGCM 240

Query: 209 TIGLSSDSKKPLEQE-----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            +GL  +    L +      + +  + +++GAEG GL    QET   +  + M   +++L
Sbjct: 241 VVGLDMEGDITLPELGAPDGLADGPLVIVVGAEGGGLSRLVQETCDQIVSIPMANSVESL 300

Query: 264 NVSNAAAVALYITQ 277
           N   AA+V LY   
Sbjct: 301 NAGVAASVVLYAVA 314


>gi|255531956|ref|YP_003092328.1| TrmH family RNA methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255344940|gb|ACU04266.1| RNA methyltransferase, TrmH family, group 3 [Pedobacter heparinus
           DSM 2366]
          Length = 254

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 13/254 (5%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPV 93
           N +     +  N F++G+  V  A+      I  +   +     +  +          PV
Sbjct: 3   NSRRPARGKESNEFIFGIRAVIEAIKAGKE-IESIYIQRGLTGGIIMELKALLKEVDAPV 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHN 146
             VP + ++++  K   HQG+    + +    ++ +         + L+++LD + D  N
Sbjct: 62  HNVPVEKLNRMTLK--NHQGVIAVISAITFQKIEDIIPAIYEKGETPLVLILDGITDVRN 119

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI R+A       I+   + S   +A   K+++GAL  IP  R  NL      +   G
Sbjct: 120 MGAIARTAACAGVHAIVVPSKNSAQINADAIKTSAGALFTIPVCRHPNLHKTALFLQECG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            Q +  +  +   +         A+++GAE +G+  +    A  +A + M G I +LNVS
Sbjct: 180 LQIVACTEKTNDLIYVPDYTAPTAIVMGAEDEGISNELMRMANHLAKIPMIGEISSLNVS 239

Query: 267 NAAAVALYITQNHF 280
            +A + LY      
Sbjct: 240 VSAGIILYEAIRQR 253


>gi|58617359|ref|YP_196558.1| putative RNA methyltransferase [Ehrlichia ruminantium str. Gardel]
 gi|58416971|emb|CAI28084.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
           str. Gardel]
          Length = 249

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 141/247 (57%), Gaps = 14/247 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQ 99
            + +++YG H   AAL N +RK  +LL T+N       + ++   +   + +P K V   
Sbjct: 3   KKKIWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNIN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSA 154
           TI+ ++   + HQG+AL+ + + + +++ V ++       +++LD V D +N+G+I+RSA
Sbjct: 62  TINSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           V F+   +I     SPSE+  ++K++SGA++ IP + + N+++A+  +   G+   G  +
Sbjct: 122 VCFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDA 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +PL +   ++K  +I G+E KGLR  T+E    +  +     I +LNVSNAAA+ALY
Sbjct: 182 KQGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241

Query: 275 --ITQNH 279
               QNH
Sbjct: 242 SIFIQNH 248


>gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 262

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 107/258 (41%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            + +  YK+ +    + ++ ++     + G   V  A+      I  L+ T+    +LD 
Sbjct: 6   SKENTIYKEAKKLKDR-KNRNKINKYVIEGFRLVDEAIKAN-LDIDYLILTEIGYEKLDN 63

Query: 83  -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             D +      V  +      ++   E   QG+      + +  LD        +  D V
Sbjct: 64  YIDKDKIKKHKVYCITDTLFKELASTE-NPQGIIAIVK-MNNKKLDF--QGDFYLFCDKV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A   +GI+ +K      +    +S  G+L ++P     +    ++ 
Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSLIKS 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF  I  S +S K   +E    KI L +G EG G+  +  + A     + MPG  +
Sbjct: 180 LKKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRRVKIPMPGGAE 239

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A ++ +Y     
Sbjct: 240 SLNVAIATSIIIYEKVRQ 257


>gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
           MIT 9211]
          Length = 413

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 17/288 (5%)

Query: 6   KKKSEKIFSLKDSH--YAKLRRN--HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +K++K     ++     ++RRN  +R+ + +   + + R+     +   +G H   A L
Sbjct: 100 SQKTDKPRRSLNARISPREIRRNDLNREEEVLVQNSGEIRNNENHLDDIFWGRHATQAIL 159

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            +  R + ++  T    +   +   L         V+ V    +  I     VHQG+AL+
Sbjct: 160 ESG-RPVHRIWCTAELRSSPKFLQLLKDSKSLGVLVEEVSWARLGYIT-HGGVHQGIALQ 217

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           TA   +  L  +         S +L+ LD + DPHN+GAI+RSA A    G++  +R S 
Sbjct: 218 TAASKTLDLQTLIDGCSQLGESSVLIALDGLTDPHNVGAIIRSAEALGAHGLVLPQRRSA 277

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  +AK A+GALEH P  R+ NL  +L ++   G+  IGL+ D    L +      + 
Sbjct: 278 GLTGSVAKVAAGALEHFPVARVVNLNRSLIELKDAGYSVIGLAGDGDFVLNEVDLLGPLV 337

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L++G+E KGL   T+     +  + + G+  +LN S AA+++LY   +
Sbjct: 338 LVIGSEDKGLSVLTRRNCDQLVRVPLRGVTSSLNASVAASISLYEIAS 385


>gi|254495332|ref|ZP_05108256.1| SpoU rRNA methylase [Polaribacter sp. MED152]
 gi|85819686|gb|EAQ40843.1| SpoU rRNA methylase [Polaribacter sp. MED152]
          Length = 248

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 12/241 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+ + S  I ++   K     L ++ +           TVP + ++++  K
Sbjct: 7   IFGLRAIIEAIESGS-TINKIYLQKGLRGSLYYELDKLIKDSKIATSTVPVEKLNRL-SK 64

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            + HQG   + +P+    L+ +             ++LD ++D  N GAI+R+A     +
Sbjct: 65  NSNHQGAVAQISPIDFYDLETLLDDTLEAEKVPFFLILDQLSDVRNFGAIIRTAECTGVN 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +A   K+++GA   +P  ++ ++ DAL  + +   +T+  +  +   +
Sbjct: 125 GIIIQKNGSAPVNAETIKTSAGAAFKMPICKVDHIKDALFILQASNIKTVAATEKTDSSI 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N  IA+I+G+E +G+ P   +     A L + G I++LNVS A  V LY T    
Sbjct: 185 YDVNFNQPIAIIMGSEHRGVNPSVLKMVDYKAKLPLSGNIESLNVSVACGVFLYETVRQR 244

Query: 281 A 281
           +
Sbjct: 245 S 245


>gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
          Length = 278

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 111/268 (41%), Gaps = 17/268 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++ +  ++++   +     + G    S     P  ++ +   T++ L +   +A
Sbjct: 6   SNSQVKQVSAIAKRAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQGEEA 62

Query: 86  -NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNS 132
             L      +TV  + +  +   +   QG+            D +            +  
Sbjct: 63  DRLLAGCRYETVTDEVMKAMADTQ-TPQGILALCRQFSYELSDILGERKEGDEHTQEKAP 121

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             L++L+ + DP N+G ILR+       G+I     +   +  + +S  G++  +P++ +
Sbjct: 122 AQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYRVPFVYV 181

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +L  A++++   G +        +K  +Q+        ++G E  GL  +T E A +  
Sbjct: 182 EDLAGAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLSDETAELADAYI 241

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            + M G +++LN + AA++ +Y T    
Sbjct: 242 KIPMLGKVESLNAAVAASILMYETARQR 269


>gi|154492222|ref|ZP_02031848.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
           43184]
 gi|154087447|gb|EDN86492.1| hypothetical protein PARMER_01856 [Parabacteroides merdae ATCC
           43184]
          Length = 249

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102
            EN  ++G+  V  A+      I ++L  +     L+R  ++       PV+ VP + +D
Sbjct: 2   KENEMVFGIRAVIEAIQADKE-IDKILVKRELQGDLSRELFEVLKGRDIPVQRVPAERLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++  K   HQG+      +    L+ +         +  +++LD V D  N GAI R+  
Sbjct: 61  RLTRK--NHQGVIAFIPAITYERLENIIPFVYEQGKNPFIVLLDGVTDVRNFGAIARTCE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D I+   R S + +A   K+++GAL  +   +  ++T+A++ + + G +    S  
Sbjct: 119 CAGVDAIVIPSRGSVTVNADAIKTSAGALHVLSVCKEKSITEAIRFLQASGVKVYAASEK 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + +       +  +A+++GAE  G+         SM  +   G I +LNVS A+++ +Y 
Sbjct: 179 AFENYTAIKYDGPVAIVMGAEDTGVSMDNLRICDSMVKIPQFGTIGSLNVSVASSILIYE 238

Query: 276 TQNHF 280
                
Sbjct: 239 VVRQR 243


>gi|224498913|ref|ZP_03667262.1| hypothetical protein LmonF1_04098 [Listeria monocytogenes Finland
           1988]
 gi|255028569|ref|ZP_05300520.1| hypothetical protein LmonL_04051 [Listeria monocytogenes LO28]
          Length = 221

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 9/213 (4%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--- 129
            ++  + +            V+ VP Q I+K+V     HQG+A + A      LD +   
Sbjct: 4   GSQKGVLKQVLTLAKERKIQVQFVPKQKIEKVVS--GAHQGVAAQVAAYQYAELDDLFAA 61

Query: 130 ----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                     ++LD + DPHN+G+I+R+A +    GII  KR S   +  +AK+++GA+E
Sbjct: 62  AEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAME 121

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           ++P +R++N+   ++++   G    G  +           +  +A+++G+EG G+    +
Sbjct: 122 YVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVR 181

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E    + HL M G + +LN S AA++ LY    
Sbjct: 182 EKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 214


>gi|328955960|ref|YP_004373293.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
           glomerans PW2]
 gi|328456284|gb|AEB07478.1| RNA methyltransferase, TrmH family, group 3 [Coriobacterium
           glomerans PW2]
          Length = 284

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 107/238 (44%), Gaps = 11/238 (4%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + G    + AL         LLA    T+ AL+ L          P+  VP   +D +  
Sbjct: 39  IEGRRAATEALRAGVPVHRALLADGAETEGALSGLIGALER-GGVPIARVPRAKLDALSS 97

Query: 107 KEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+ LET P    T++ V       + L++VLDHV D  N GAI+RSA      G
Sbjct: 98  -HGAHQGIVLETEPFPYATVEDVIARAGAGAALVVVLDHVTDEGNFGAIVRSAEVVGAAG 156

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   + + +      K+++GA+ H+P  R+ N+  AL+ +   GF   G +  ++  + 
Sbjct: 157 VIIASKRAAAVGVGAYKTSAGAVMHLPIARVPNIVRALEALKGAGFWVGGATEHARDTVW 216

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +IAL+ G+EG GL     E+      L   G  ++LNV+ AA V  Y     
Sbjct: 217 DASLEGRIALVAGSEGSGLSRLVLESCDFTVRLPQRGQTESLNVAQAATVLCYEWLRR 274


>gi|150021393|ref|YP_001306747.1| RNA methyltransferase [Thermosipho melanesiensis BI429]
 gi|149793914|gb|ABR31362.1| RNA methyltransferase, TrmH family, group 3 [Thermosipho
           melanesiensis BI429]
          Length = 238

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 7/233 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG + +   L N            +  ++ +L          P      + ++K+   E
Sbjct: 3   VYGRNVLKEILENNVNVKMIYFSNVSSKSIEKLIELVKEKR-LPFTIANNRILEKL-SNE 60

Query: 109 AVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
             HQG+ ++           +       L++LD + DPHN GAI+R++VA   D ++  K
Sbjct: 61  KKHQGVVIDIGDFEYKDESIIEKMEKPFLVILDQIQDPHNFGAIIRTSVAAGADALVIPK 120

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             S   +  + K + G L     I ++N+   ++K+ + G    G + D K+   +    
Sbjct: 121 NNSVKVTPTVVKVSVGTLFKTNIIEVTNIARFIEKIKTLGIWVYGAAMDGKE-YFKVDLK 179

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +A++LG EG G+R   +     +  + M   +++LNVS +A + LY     
Sbjct: 180 KPVAIVLGNEGNGIRENVKNKCDDLISIPMKNNVESLNVSVSAGILLYEVYRQ 232


>gi|325925834|ref|ZP_08187204.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
 gi|325543769|gb|EGD15182.1| 23S rRNA Gm-2251 2'-O-methyltransferase family [Xanthomonas
           perforans 91-118]
          Length = 252

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 6   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 65

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 66  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 124

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 125 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 184

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 185 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 244

Query: 276 TQNHF 280
                
Sbjct: 245 AVRQR 249


>gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes J139]
 gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes J139]
 gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA2]
 gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL001PA1]
 gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL044PA1]
 gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL082PA2]
 gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL037PA3]
 gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA3]
 gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL110PA4]
 gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL060PA1]
 gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL050PA2]
 gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL103PA1]
 gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
           P08]
          Length = 318

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 19/289 (6%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQPENLFLYGVHTVSAAL 61
           +  + +     +  A+ R  H+ YK  Q        +K   +      ++ G + V  AL
Sbjct: 24  RGRKALKGRGPTPKAEDRVYHKAYKAKQERLARAAARKPAKSKGAGPEWVIGRNPVLEAL 83

Query: 62  NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            +    +      + A   +RL         H   +       +D++ G  + HQG+AL 
Sbjct: 84  -HVGLPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRGELDRMTG-GSNHQGVALR 141

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                  T+D +        +  L++ LD V DP N+GAI+RSA AF   G++   R S 
Sbjct: 142 LPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSA 201

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229
           S +A   K+++GA   +P    SNL  AL K  + G+  +GL+ ++   +      +  +
Sbjct: 202 SMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLAGEADSDIAAAPGLDGPL 261

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L++G+EG+GL   T+++   +  + +   +++LN S AA++ALY    
Sbjct: 262 VLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASR 310


>gi|302339680|ref|YP_003804886.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636865|gb|ADK82292.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 252

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 17/244 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YG H +  AL    R    +++ K+                V+ V  + +D + G    
Sbjct: 7   IYGFHAIEEALKKRHRGAELMVSGKSKRISALIALAEQKGCKVRNVSREELDDLSG-GVD 65

Query: 111 HQGLALE--------TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           H+G+ L           P  +   D V           L+++LD + DP N+GAILRSA 
Sbjct: 66  HRGVLLFLSDAVSSGRKPPTNRDFDTVLQQLATREEQALILLLDGITDPQNLGAILRSAD 125

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F+ D ++  +R S  + AV+ K ++GA  H+P   + N+  A++ +   GF   G    
Sbjct: 126 QFAVDLVVLPERRSAGDGAVVDKVSAGASLHVPRSVVPNIPRAVEGLKKAGFWVYGADMG 185

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                       K+A++LGAEG+G+    +E    +  +   G I + NVS A  + LY 
Sbjct: 186 GGSA-WNFSLKGKVAMVLGAEGRGIGRLVRERCDEIISIPSRGHIDSFNVSVAGGILLYE 244

Query: 276 TQNH 279
            +  
Sbjct: 245 CRRQ 248


>gi|254521763|ref|ZP_05133818.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
           SKA14]
 gi|219719354|gb|EED37879.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas sp.
           SKA14]
          Length = 247

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 13/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++ GV+ V++++ N +  + ++L    A    L  ++ +A       V+ V  Q +D  V
Sbjct: 7   WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARR-KGIDVRKVNAQALDG-V 64

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G    HQG+A   A   + + + +           LL+VLD V DPHN+GA LRSA A  
Sbjct: 65  GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A + K+++GA + IP + ++NL+  L+ +   G    GL+ ++  
Sbjct: 125 ATAVIIPKDKSATVNATVRKTSAGAADRIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      IAL+LG E  GLR  T+E    +  + MPG I++LNVS AA V+L+    
Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVR 244

Query: 279 HFA 281
              
Sbjct: 245 QRG 247


>gi|78047165|ref|YP_363340.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035595|emb|CAJ23264.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 249

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|295135708|ref|YP_003586384.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294983723|gb|ADF54188.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 244

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           ++G+  V  A+ +    I ++   K     L  +         + +  VP + + K+   
Sbjct: 7   IFGIRAVIEAIESG-ESIDKIFIQKGLSGELFSELKRTLSKGNYNISYVPQEKLYKLS-- 63

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  + +P+    L+       A +     ++LD +ND  N GAI+R+A     D
Sbjct: 64  KGNHQGVVAKISPIAFKGLEETVEPILAKKEVPFFLLLDQINDVRNFGAIIRTAECCGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  ++ +   +A   K+++GA+ +IP  +++++ DA+  + S G QT+  +  +   +
Sbjct: 124 AIIIPEKGAAPINADTVKTSAGAVFNIPICKVNHIKDAVFYLQSSGIQTVAATEKTDNLI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    A+I+G E KG+ P   +T    A L M G I +LNVS A    LY      
Sbjct: 184 YNIDFKKPTAIIMGNEAKGISPSILKTIDHKAKLPMHGEIASLNVSVACGAFLYEVVRQR 243


>gi|148657561|ref|YP_001277766.1| RNA methyltransferase [Roseiflexus sp. RS-1]
 gi|148569671|gb|ABQ91816.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus sp. RS-1]
          Length = 252

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 13/242 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPH--PFPVKTVPPQTIDKI 104
             LYG + V  AL    R   +LL +  A     L     +      PV+ +  +     
Sbjct: 3   DLLYGRNAVREALRARRRTFQRLLVSAGAQETGTLGDIVRIAGEVGVPVERIDRRE-LDR 61

Query: 105 VGKEAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             ++A HQG+ALE +      L       +       L++LDH+ DP N+G +LR+A   
Sbjct: 62  RLRDANHQGVALECSDYPYVDLNDCLALAEERGEPAFLLLLDHIQDPQNVGTLLRTAEVV 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++   R +   +  +  ++SGA+EH+    ++NL   ++++   G   +G+  D +
Sbjct: 122 GVHGVVIPGRRAAEVTPAVVNTSSGAVEHLRVAVVTNLAATIEQIQHAGVWVVGVEDDER 181

Query: 218 KP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               ++   +  +AL+LGAEG GL   T+E    +  L M G I +LNV+ A ++ LY  
Sbjct: 182 AYEYDRVDLDLPLALVLGAEGPGLARLTRERCDFLVRLPMRGQIASLNVAVAGSIVLYHA 241

Query: 277 QN 278
             
Sbjct: 242 WR 243


>gi|163752931|ref|ZP_02160055.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
 gi|161326663|gb|EDP97988.1| putative tRNA:rRNA methyltransferase [Kordia algicida OT-1]
          Length = 246

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 114/246 (46%), Gaps = 13/246 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTI 101
           Q  N  ++G+  +  A+N+ S  I ++   K     L  + +     +      VPP+ +
Sbjct: 2   QNNNTQIFGIRAIIEAINSGS-TIDKVFIQKGLRGELFNELDHLLRSNAISTSFVPPEKL 60

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           +++  K   HQG+    +P+    LD +             ++LD ++D  N GAI+R+A
Sbjct: 61  NRLTKK--NHQGVIALISPIEFHDLDTLVLNVIESGRVPKFLILDQLSDVRNFGAIIRTA 118

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                DGII  K+     +A   K+++GA+  +P  ++ ++ DA+  + S G Q +  + 
Sbjct: 119 ECTGVDGIIIQKKGGAPVNADAVKTSAGAIFKMPICKVDHIKDAIYHLQSSGVQIVAATE 178

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++  L        +A+++G+EGKG+ P   +     A L M G I +LNVS A    LY
Sbjct: 179 KTENTLYDVDFTIPVAIVMGSEGKGVSPSILKIVDHQAKLPMLGEIASLNVSVACGAFLY 238

Query: 275 ITQNHF 280
                 
Sbjct: 239 EIVRQR 244


>gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
           DSM 20213]
 gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
           DSM 20213]
          Length = 332

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 26/299 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++           R      ++ +  +  +  S   +  +YG ++V  AL   
Sbjct: 25  TPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84

Query: 65  -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                  +++      R      +   +   +       +D+I  +   HQG+ L+  P 
Sbjct: 85  VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDPF 143

Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +L  + +                       L + LD V DP N+GA++RSA AF  +
Sbjct: 144 QYSSLRELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 203

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+  +GL     K +
Sbjct: 204 GVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKAIEGLKERGYYVVGLDGGGDKLV 263

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E   + D + ++LG+EG GL    +E+  ++A + +   +++LN S AA ++LY    
Sbjct: 264 GETGFETDPLVVVLGSEGSGLSRLVRESCDAIAGIPISSSVESLNASVAAGISLYAVSR 322


>gi|145640974|ref|ZP_01796556.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae R3021]
 gi|145274488|gb|EDK14352.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Haemophilus
           influenzae 22.4-21]
          Length = 189

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 7/182 (3%)

Query: 106 GKEAVHQGLALET---APLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
               VHQG+         L    LD +   + + LL+VLD V DPHN+GA LR+A A   
Sbjct: 5   ADGEVHQGVIARVQAAKELNENDLDEILANKQNPLLLVLDGVTDPHNLGACLRTADAAGA 64

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK 218
             +I  K  S   +++  K A GA E +P IR++NL+  L+ +        +G + ++ +
Sbjct: 65  VAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATE 124

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + Q      +AL++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+    
Sbjct: 125 TIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFEIVR 184

Query: 279 HF 280
             
Sbjct: 185 QR 186


>gi|125623434|ref|YP_001031917.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492242|emb|CAL97171.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070181|gb|ADJ59581.1| rRNA methyltransferase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 252

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 115/277 (41%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K ++K+   +     K R+N                     +  + G H +  A
Sbjct: 1   MEIISSKDNKKVKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L      I Q+   +N LA+L              V  V    +  +   E+  QGL  E
Sbjct: 40  LKAGH-SIKQIFVEENKLAKLTAMIGSEKSLTDLSVNLVSKDVLKSLADSES-PQGLIAE 97

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            A ++   +D   ++   ++L++V DP N+G ++R+A A     +I     +   S  + 
Sbjct: 98  VA-IIEEVIDF--SASKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVM 154

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+   R+ N  +    +       +  +  +     + ++    AL++G EG
Sbjct: 155 RSMQGSNFHLAIARM-NEEECFAALKQAKISILTTTLSANSVSYKTVEESSFALVMGNEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+     E+A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 214 AGVSDFAVESADKLVHIDMPGQAESLNVAVAAGILMF 250


>gi|315227398|ref|ZP_07869185.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
 gi|315119848|gb|EFT82981.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 329

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/275 (25%), Positives = 125/275 (45%), Gaps = 26/275 (9%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP-- 88
           ++ +  +  R TS  +   + G ++V  AL       +  +L       R      L   
Sbjct: 55  RLAARRRVDRFTSDSDEFVI-GRNSVLEALRAHVPASVLYVLNRIEHDDRTREIIRLAGL 113

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---------------- 132
               +       +D+I   +  HQG+ ++ AP    TL  + +                 
Sbjct: 114 EGLKILEADRLEMDRIARTD-HHQGVIIKAAPYQYHTLQELADKAEAKASAMKAASPAAR 172

Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P
Sbjct: 173 ALAQPLFIALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSASVTASAWKVSAGAAAHLP 232

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET 247
             R+ NLT A++ +   G+ +I L       + E   ++D + ++LG+EGKG+    +E 
Sbjct: 233 VARVVNLTKAIESLKERGYYSIDLDGGGTATVGESGFESDPLIVVLGSEGKGISRLVREQ 292

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             S+  + M  ++++LN S AA +AL+      A+
Sbjct: 293 CDSIVSIPMTSLVESLNASVAAGIALFSVHQARAR 327


>gi|269957727|ref|YP_003327516.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306408|gb|ACZ31958.1| RNA methyltransferase, TrmH family, group 3 [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 327

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 30/289 (10%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQK---------------SRHTSQPENLFLYGVHTVSAALN 62
           +  A+ R  H  +KK Q   ++                   S      + G ++V  AL 
Sbjct: 38  TPKAEDREYHPAFKKKQEAEKRAAGQRQRGAARGVVRGTRRSTDGVEVIAGRNSVLEALR 97

Query: 63  NPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                I  +        +   R            +  V    +D++   + VHQG+A + 
Sbjct: 98  TDV-PITTVYVATRLDHDDRTREILQHAASAGLALLEVTKPELDRLTDGQ-VHQGVAAQV 155

Query: 119 APLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            P     +D + +         L++ LD V DP N+GAILRSA AF   G++  +R S  
Sbjct: 156 PPYEYRDVDDLLDAAEASGRPPLIVALDGVTDPRNLGAILRSAGAFGAHGVLVPERRSAG 215

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIA 230
            +A   K ++GA  H+P  R +NL  AL ++   G   +GL  D  + + E  +  D + 
Sbjct: 216 VTASAWKVSAGAAAHVPVARATNLARALGELKKAGCFVVGLDGDGDQLVGELSLATDPLV 275

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYITQN 278
           +++G+EGKG+    +ET   +A + +    +++LN   A ++ALY    
Sbjct: 276 VVVGSEGKGMGRLVRETCDVIASIPIDSTAVESLNAGVATSIALYEIAQ 324


>gi|331701543|ref|YP_004398502.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128886|gb|AEB73439.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
           B-30929]
          Length = 256

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 112/268 (41%), Gaps = 22/268 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S +++         +++ KMQS   + +         + G H V  A+ +      
Sbjct: 4   ERITSNQNNRV-------KEWTKMQSKKGRVK----SGEYVIEGWHIVDEAIRHRQTIKQ 52

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLD 127
            ++  ++ L  L  D        +  + P+    I   E   QG+   L T        D
Sbjct: 53  LMVVDESYLGDLPVD----DDTEIFLITPEIAKHISSTE-TPQGVFAVLNTEDYHEQIPD 107

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            ++ +   ++LD++ DP NIG ++R+A A   +GI+  K  +   +  + +S  G+  H+
Sbjct: 108 DLKGA--WLLLDNIQDPGNIGTMVRTADAAGLNGIVFGKGSADLYNPKVVRSMQGSQFHM 165

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++ + +      G +T G    D            + ALI+G EG G+ PK  E
Sbjct: 166 KLF-TGDILEWMAAFKEAGVKTYGTELNDQAISYYDITPTKQFALIMGNEGNGVDPKILE 224

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                 ++ M G  ++LNV+ A  + L+
Sbjct: 225 KTDQNLYIPMNGEAESLNVAVATGILLF 252


>gi|268317136|ref|YP_003290855.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
           DSM 4252]
 gi|262334670|gb|ACY48467.1| RNA methyltransferase, TrmH family, group 3 [Rhodothermus marinus
           DSM 4252]
          Length = 252

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 119/243 (48%), Gaps = 16/243 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L G + V  AL     ++ ++L  + A          A   H  PV+ VP   +D++   
Sbjct: 8   LVGRNPVREALEQEETRVEKVLLQEGAGGPALEAIRRAARAHGVPVQMVPKARLDRLAA- 66

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS------------QLLMVLDHVNDPHNIGAILRSAV 155
            AVHQG+    AP+   TL+ + +              LL+ LD + DPHN GAILR+A 
Sbjct: 67  GAVHQGVVAFVAPVRYRTLEELLDEVAPSPEAVRERLPLLVALDQIEDPHNYGAILRTAA 126

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A    G++  + +    +A   K+++GA   IP  R++NLT AL+ + + GF   G S  
Sbjct: 127 AAGVAGVLVPRHHMAPLNAAALKASAGAALRIPIARVTNLTRALESLKAHGFWVAGASPS 186

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  + +   +  + L+LG EG+GLRP   +    +  + + G +++LNVS AA + L+ 
Sbjct: 187 GEVSVWEMDWHRPLVLVLGNEGRGLRPGVAQACDLLVSIPLRGPVESLNVSVAAGILLFA 246

Query: 276 TQN 278
              
Sbjct: 247 ATR 249


>gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
 gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
          Length = 260

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 7/240 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           H ++     + G   V  AL +  +   IF   + K+     D  + L     +  V  Q
Sbjct: 23  HRTKNNQFLIEGFRFVEEALKSEFQVPMIFVSESHKSRFQSFDIKSKLQKSTKIYWVSEQ 82

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + K++      QG+        +  L+        +++D V DP N+G I+R+A A   
Sbjct: 83  VL-KLLSDTETPQGITAVV---DNKELNVENKEGFYVLVDKVQDPGNMGTIIRTAHASKA 138

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I TK      +    +S  G++ H+P I+ ++L   +  +   GF  +  S ++ K 
Sbjct: 139 LGVIITKGTVDIYNEKTLRSTMGSIFHVPVIQDNDLNK-VNFLKEKGFNLVASSLNTDKN 197

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   K  + +G EG G+  +    A     + MPG  ++LNVS AA V ++     
Sbjct: 198 FYDVDLKGKKIIAVGNEGSGISDEIYNMADIKVKIPMPGGAESLNVSVAAGVMMFEVIRQ 257


>gi|91216066|ref|ZP_01253034.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
 gi|91185583|gb|EAS71958.1| putative tRNA:rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
          Length = 249

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 11/243 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103
            E+  ++G+H++  AL         +L   +   +L     L       V  VP Q   K
Sbjct: 2   EESHVIFGIHSIVEALRQGKDIEKIILLRDSDNPKLKEIEGLAEQNTIKVSYVPIQKFKK 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              ++  HQG    T+ +     +        ++   L ++LD + D  N+GAILR+A  
Sbjct: 62  Y--EQLNHQGAIAHTSKISYSDFEETVEKVLEIKEKPLFLLLDGITDVRNLGAILRTAEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I  K  S   +    K+++GA  +IP  ++++L DAL  + S G + + ++  +
Sbjct: 120 TGVDAVILPKSGSAQVNNETIKTSAGAAFNIPICKVNHLKDALFYLKSSGVEIVAVTEKT 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + +   N  +AL++G EG+G++P   + A     L M G I++LNVS A  V LY  
Sbjct: 180 NTSVYELELNKPLALLMGGEGEGIQPSILKMADVKGKLPMLGSIESLNVSVACGVILYEC 239

Query: 277 QNH 279
              
Sbjct: 240 LRQ 242


>gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 268

 Score =  220 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 118/264 (44%), Gaps = 13/264 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWD 84
           N+   K++ ++ +KS+   + +   + G+  +  A   P  ++ ++  T   L +  + D
Sbjct: 6   NNDRVKQVVNYIEKSKARREDDVFVIEGMKMLREA---PVLQVREVYVTTRFLDKASEED 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--------SQLLM 136
             +   +  + V  + + K+   +   QG+    +       + +            L++
Sbjct: 63  KEILWRYGAEEVSDEVMKKMAATQ-TPQGVIAVISQYHYTMEEVLEGYNQDDEGAKPLIL 121

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+++ DP N+G +LRS       GII +K  +   +  + +S  G++  +P+I + ++ 
Sbjct: 122 VLENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTMGSIFRMPFIYVESIP 181

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           + L+ + + G  T       +K  ++       A ++G EG GL  +T + A +   + M
Sbjct: 182 EVLETLKANGIHTYAAHLKGEKNYDEFDYTHPTAFLIGNEGNGLTKETADAADTYILIPM 241

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
            G ++++N + ++A+  +      
Sbjct: 242 KGEVESMNAATSSAILTFEASRQR 265


>gi|194365073|ref|YP_002027683.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
           R551-3]
 gi|194347877|gb|ACF51000.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
          Length = 247

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 13/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++ GV+ V++++ N +  + ++L    A    L  ++ +A       V+ V  Q +D  V
Sbjct: 7   WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARR-KGIDVRKVNSQALDG-V 64

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G    HQG+A   A   + + + +           LL+VLD V DPHN+GA LRSA A  
Sbjct: 65  GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S S +A + K+++GA + IP + ++NL+  L+ +   G    GL+ ++  
Sbjct: 125 ATAVIIPKDKSASVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      IAL+LG E  GLR  T+E    +  + MPG I++LNVS AA V+L+    
Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVR 244

Query: 279 HFA 281
              
Sbjct: 245 QRG 247


>gi|184201514|ref|YP_001855721.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581744|dbj|BAG30215.1| rRNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 322

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 15/249 (6%)

Query: 47  ENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +   + G ++V  AL    P++ +F       +   +           P        +D+
Sbjct: 73  KEDLVTGRNSVLEALRGGVPAKTLFVASKIEVDDRVKDILQLCAERQVPTLEASRGELDR 132

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV----------RNSQLLMVLDHVNDPHNIGAILRS 153
           +   +A+HQG+ L+  P   P  D +           +  LL+  D + DP N+GAI+RS
Sbjct: 133 LSS-DAIHQGVVLQVPPYEYPDADELAASVMHAADREHPPLLVAADGITDPRNLGAIIRS 191

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             AF+ DG+I  +R S   +A   K++SGA   +P  + +NLT  LQ     G+  +GL 
Sbjct: 192 VSAFAGDGVILPERRSAGVTATAWKTSSGAAARVPVAKATNLTRTLQNCKKQGYFVVGLD 251

Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                 L Q E+  + + +++G+EGKGL     E   ++  + +   +++LN S A  + 
Sbjct: 252 GGGDMSLPQLELATEPLVVVVGSEGKGLSRLVTEHCDAIVSIPIESAMESLNASMAVGIT 311

Query: 273 LYITQNHFA 281
           LY      A
Sbjct: 312 LYEIARRRA 320


>gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
 gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium
           acetobutylicum ATCC 824]
 gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
          Length = 261

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 112/255 (43%), Gaps = 9/255 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-- 81
            + +   K+++  N+K +H    ++  + G+  V  AL +   KI  L  ++    +   
Sbjct: 7   SKENSIIKEVKKLNEK-KHRDLKKSFIVEGLRFVREALESD-FKIQYLFVSEKNYDKFIL 64

Query: 82  -DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            +    +   F V  V    +  I   +   QG+           +         M++D 
Sbjct: 65  KELKELIKKEFQVIKVTESILKDICNTQ-TPQGIVAVV---QYKEVAWKLTKGFYMLVDK 120

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+I TK      +    ++  G++  IP I   +    ++
Sbjct: 121 VQDPGNMGTIIRTANAAGALGVIITKGTVDIYNNKTLRATMGSIFKIPIIFEDDNFSKIK 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++   GF+ I  S D++        N+K+ + +G EG G+  K  + + +   + MPG +
Sbjct: 181 ELKKNGFKIIASSLDTEHNFYDVSLNEKLIIAVGNEGNGISDKIVDISDTKVKIPMPGNV 240

Query: 261 KALNVSNAAAVALYI 275
           ++LNV  AAA+ ++ 
Sbjct: 241 ESLNVGVAAAIMMFE 255


>gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
           acnes HL030PA1]
          Length = 318

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 19/289 (6%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQPENLFLYGVHTVSAAL 61
           +  + +     +  A+ R  H+ YK  Q        +K   +      ++ G + V  AL
Sbjct: 24  RGRKALKGRGPTPKAEDRVYHKAYKAKQERLARAAARKPAKSKGAGPEWVIGRNPVLEAL 83

Query: 62  NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            +    +      + A   +RL         H   +       +D++ G  + HQG+AL 
Sbjct: 84  -HVGLPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRGELDRMTG-GSNHQGVALR 141

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                  T+D +        +  L++ LD V DP N+GAI+RSA AF   G++   R S 
Sbjct: 142 LPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSA 201

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229
           S +A   K+++GA   +P    SNL  AL K  + G+  +GL+ ++   +      +  +
Sbjct: 202 SMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLAGEADSDIAAAPGLDGPL 261

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L++G+EG+GL   T+++   +  + +   +++LN S AA++ALY    
Sbjct: 262 VLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASR 310


>gi|57239339|ref|YP_180475.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161418|emb|CAH58342.1| putative tRNA/rRNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 249

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 141/247 (57%), Gaps = 14/247 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQ 99
            + +++YG H   AAL N +RK  +LL T+N       + ++   +   + +P K V   
Sbjct: 3   KKKIWIYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNLN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSA 154
           TI+ ++   + HQG+AL+ + + + +++ V ++       +++LD V D +N+G+I+RSA
Sbjct: 62  TINSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           V F+   +I     SPSE+  ++K++SGA++ IP + + N+++A+  +   G+   G  +
Sbjct: 122 VCFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDA 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +PL +   ++K  +I G+E KGLR  T+E    +  +     I +LNVSNAAA+ALY
Sbjct: 182 KQGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241

Query: 275 --ITQNH 279
               QNH
Sbjct: 242 SIFIQNH 248


>gi|312877039|ref|ZP_07737012.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796180|gb|EFR12536.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 270

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 118/289 (40%), Gaps = 34/289 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  IS +++E I  +K  H  K R   R +                    + G+  V  A
Sbjct: 6   VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVREA 46

Query: 61  LNNPSRKIFQLLATKNAL----------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           ++     I  ++ ++ A            RL  D  +     V    P  + + +   + 
Sbjct: 47  IDYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIERVIEV----PDKLFEYITTTST 102

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            QG+  E    +   ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK    
Sbjct: 103 PQGILAECN-FVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVD 161

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G+L H+  +R +     ++ +    F     +      + + + + +  
Sbjct: 162 IYNPKTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVTTPYGDIEISKIVPDKRFC 221

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +++G E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 222 VVIGNESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|282858069|ref|ZP_06267264.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
           piscolens W5455]
 gi|282583991|gb|EFB89364.1| RNA methyltransferase, TrmH family, group 3 [Pyramidobacter
           piscolens W5455]
          Length = 269

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 114/233 (48%), Gaps = 10/233 (4%)

Query: 52  YGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +G + V   L +     RK+F L   ++               P+  V  + ++++ G  
Sbjct: 25  WGRNPVLTLLEHRPELCRKVFLLAGAQDEFRDTVARLCADGRIPLDFVEREELERLSG-G 83

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           AVHQG+A   AP+    LD V      +   L+++LDH  DPHN+GA++R+A       +
Sbjct: 84  AVHQGVAARVAPIPPADLDGVVDALDPQAPALIVLLDHCQDPHNLGAVIRTAEVAGAACV 143

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +     S + +  + K+++GA   +P  ++ N+  A++++   GF  +GL   + + +  
Sbjct: 144 VCQNDRSATVNGTVVKTSAGAAFRLPVAQVVNVGRAVERLKRKGFWVVGLDHRTDETVWS 203

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               +++AL++G+EG+G+   T +    +    M G    LN S AAA+ ++ 
Sbjct: 204 SALPERLALVVGSEGEGISALTAKKCDMLVKFPMAGRTGNLNASVAAALGMFE 256


>gi|327395414|dbj|BAK12836.1| 23S rRNA RlmB [Pantoea ananatis AJ13355]
          Length = 188

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 83/164 (50%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            +    P L        L+VLD V DPHN+GA LRSA A     +I  K  S   +A   
Sbjct: 24  VSGRRLPDLLQSLEKPFLLVLDGVTDPHNLGACLRSADAAGAHAVIVPKDRSAPLNATAK 83

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K ASGA E++P IR++NL   L+ +  +    +G + ++   + Q      +AL++GAEG
Sbjct: 84  KVASGAAENVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTVYQSKMTGPMALVMGAEG 143

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +G+R  T+E    +  + M G + +LNVS A  V L+       
Sbjct: 144 EGMRRLTREHCDELISIPMAGSVSSLNVSVATGVCLFEAVRQRN 187


>gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 325

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 17/293 (5%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKK--MQSFNQKSRHTSQPENLFLYGVHTVSA 59
              + K  ++ +    +H  K RR  R  ++  +     KS       +  + G + V+ 
Sbjct: 35  KGPTPKAEDRPYHP--AHKRKARREARQAQEAAIARARAKSSIRVPAGHELIAGRNPVAE 92

Query: 60  ALNNPSRKIFQLLATKN-ALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           A       I ++    N    R++    L      PV  V  + +D +    A HQG+A+
Sbjct: 93  A-ARAGVPIERVFVLDNVKDDRVEEVIRLASSMGAPVFEVTRRDLD-VATDGASHQGVAI 150

Query: 117 ETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           E        +D +           LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S
Sbjct: 151 EVRGYEYTPVDDLIAGSVQQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDGVIIPERRS 210

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDK 228
              +    K ++GA   +P  R +NL  AL+     GF  +GL      PL    + +  
Sbjct: 211 AGVTTAAWKVSAGAAARVPVARATNLVRALEDCKRAGFFVVGLDGGGDAPLRGLPLADGP 270

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + L+ GAEG GL    ++T   +  + +   +++LN + A  +ALY   +  A
Sbjct: 271 LVLVAGAEGTGLSRLVRQTCDQIVSIPISSAVESLNAAVATGIALYEVASVRA 323


>gi|166711529|ref|ZP_02242736.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 249

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S S +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 VVRQR 246


>gi|312793386|ref|YP_004026309.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180526|gb|ADQ40696.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 270

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 118/289 (40%), Gaps = 34/289 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  IS +++E I  +K  H  K R   R +                    + G+  V  A
Sbjct: 6   VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46

Query: 61  LNNPSRKIFQLLATKNAL----------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           ++     I  ++ ++ A            RL  D  +     V    P  + + +   + 
Sbjct: 47  IDYQIECINLVMFSQQAKDRYQEFYWECKRLLEDGKIERVIEV----PDKLFEYITTTST 102

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            QG+  E    +   ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK    
Sbjct: 103 PQGILAECN-FVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVD 161

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G+L H+  +R +     ++ +    F     +      + + + + +  
Sbjct: 162 IYNPKTIRATMGSLFHMQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFC 221

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +++G E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 222 VVIGNESEGVSDSFAKMATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|50841866|ref|YP_055093.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
           KPA171202]
 gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
           KPA171202]
          Length = 318

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/289 (24%), Positives = 131/289 (45%), Gaps = 19/289 (6%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSF-----NQKSRHTSQPENLFLYGVHTVSAAL 61
           +  + +     +  A+ R  H+ YK  Q        +K   +      ++ G + V  AL
Sbjct: 24  RGRKALKGRGPTPKAEDRVYHKAYKAKQERLARAAARKPAKSKGAGPEWVIGRNPVLEAL 83

Query: 62  NNPSRKIFQLLATKNA--LARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            +    +      + A   +RL         H   +       +D++ G  + HQG+AL 
Sbjct: 84  -HVGLPVRTAYVAEGAEHDSRLREILTFAADHGIALMQATRGELDRMTG-GSNHQGVALR 141

Query: 118 TAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                  T+D +        +  L++ LD V DP N+GAI+RSA AF   G++   R S 
Sbjct: 142 LPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSA 201

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKI 229
           S +A   K+++GA   +P    SNL  AL K  + G+  +GL+ ++   +      +  +
Sbjct: 202 SMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMIVGLAGEADSDIAAAPGLDGPL 261

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L++G+EG+GL   T+++   +  + +   +++LN S AA++ALY    
Sbjct: 262 VLVVGSEGEGLARLTRQSCDVLTSIPISSDVESLNASVAASIALYEASR 310


>gi|300856606|ref|YP_003781590.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300436721|gb|ADK16488.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
          Length = 260

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 9/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPP 98
           +  Q     + G   V  AL +   KI  +  + +      +L    N    FPV  +  
Sbjct: 23  YRVQEGKFLIEGFRFVREALYSD-FKISSIFLSSDFTDKWEKLLLKENFQCDFPVYFMEK 81

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                +V  E   QG+A       +  L A       ++ D + DP N+G I+RSA A  
Sbjct: 82  GVFKAMVNTE-NPQGIAAVV---ENRELKASNKEGFYILADKIQDPGNMGTIIRSAHASG 137

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+I TK      +    +S  G++ H+P I   +L   ++ +   GF+ IG S D+  
Sbjct: 138 ALGVIITKGTVDIYNEKTLRSTMGSIFHVPVIYDEDLKK-VELLRKSGFKLIGSSLDTDI 196

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    K+ + +G EG GL    Q+ +     + MPG  ++LNVS AA++ ++    
Sbjct: 197 SFYSANLKGKVIIAVGNEGNGLSKTIQDISDIKVKIPMPGGAESLNVSAAASIMMFEAVR 256

Query: 279 H 279
            
Sbjct: 257 Q 257


>gi|188577053|ref|YP_001913982.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521505|gb|ACD59450.1| RNA methyltransferase, TrmH family, group 3 [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 255

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + G +  HQG+A             L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  GVAG-QVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S S +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 VVRQR 246


>gi|255327697|ref|ZP_05368763.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
           ATCC 25296]
 gi|255295371|gb|EET74722.1| RNA methyltransferase, TrmH family, group 3 [Rothia mucilaginosa
           ATCC 25296]
          Length = 328

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 20/297 (6%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++    +H  K     R         Q      +  +  + G + V  AL
Sbjct: 32  KGPTPKAEDRVYH--KAHKMKRAAERRAATGTNRKFQTRLGGKRASDELVTGRNAVLEAL 89

Query: 62  NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               PS+ ++ +     +   R           P+  +P   +D++    +VHQG+A++ 
Sbjct: 90  RTEIPSKHLYIMSRVEVDDRVREIMTIANKRNIPMLEIPRSELDRLTD-GSVHQGVAMQI 148

Query: 119 APLLSPT-----LDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            P   P      LD +            L + LD + DP N+GAI+RS  AFS DG+I  
Sbjct: 149 PPYKYPDATDLVLDTMERWHSGKLSTPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIP 208

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EI 224
           +R S + +A   K+++GA   IP    +NLT  +Q+    G   IGL       L   E+
Sbjct: 209 ERRSAAVTAGAWKTSAGAAARIPVAMATNLTRVIQQAKEQGIFVIGLDGGGDIELPALEL 268

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            N+ + +++G+EGKGL     E    +  + +   +++LN + A  + LY      A
Sbjct: 269 ANEPLCVVVGSEGKGLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRA 325


>gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
           16992]
          Length = 333

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 40/295 (13%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNN- 63
           +  A+ R  H+ YK+ Q+ N++              + +S+ ++L + G + V  AL   
Sbjct: 25  TPKAEDRVYHKAYKEKQATNRRKMADPRLAARRRAAKFSSESDDLVI-GRNAVLEALRCG 83

Query: 64  -PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            P+  ++       +   R        H   +       +D+I  + + HQG+ ++  P 
Sbjct: 84  VPASTLYVAARIEHDDRTREIIRLAGIHGLNLMEADRLEMDRIA-RSSNHQGVVMKAQPF 142

Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +L  +                         L + LD V DP N+GA++RSA AF  +
Sbjct: 143 QYSSLAELVERADKKSRAMEAANSTSARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 202

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ ++GL       +
Sbjct: 203 GVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALV 262

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E   + D + ++LG+EG GL    +ET  S+A + M  ++++LN S AA + LY
Sbjct: 263 GETGFETDPLVVVLGSEGNGLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317


>gi|169829514|ref|YP_001699672.1| putative tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
 gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
          Length = 254

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 114/267 (42%), Gaps = 20/267 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S +++         + +KK+ +     +   +     + G H +  AL +   ++ 
Sbjct: 2   KRIESTQNALV-------KYWKKLATTR---KERERSGEFIVEGFHLIEEALKH-KEQVL 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDA 128
           Q++  +     + W  +      V +V  +   +        QG+      P+L    +A
Sbjct: 51  QIIVREGVDLPMLWPIDGIAIVEVTSVVAKEFAE----TETSQGVFAICKQPVLEE--EA 104

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             + + ++++D V DP NIG ++R+A A   D +I  K  +   +    ++A G+  HIP
Sbjct: 105 KTSWRKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAAQGSHFHIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R   LT+ +  +   G    G + D    P          A+I+G EG G++P+    
Sbjct: 165 VVR-EELTECVDFLQDQGVPVFGTALDEDAVPYSDIHHTGAFAIIMGNEGSGIQPQLLAM 223

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + + G  ++LNV+ A  + LY
Sbjct: 224 TDQNIIIPILGQAESLNVAVATGIVLY 250


>gi|328675679|gb|AEB28354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Francisella cf.
           novicida 3523]
          Length = 248

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 10/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG--- 106
            +YG+H V + +     K   +    NA  +++   +      +K        ++ G   
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEDIISRAESKGLKITYIDNFKQLPGRIR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAIEINDFKTYSENDIETLIPKDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSSPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGIWVIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L      D +A++ GAEG G+R +T+ +   +A L M G + +LNVS A  +ALY T   
Sbjct: 184 LYSMNLEDSVAIVAGAEGSGMRQRTKASCDFLAKLPMLGEVSSLNVSVATGIALYETVRQ 243

Query: 280 F 280
            
Sbjct: 244 R 244


>gi|257470689|ref|ZP_05634779.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317064895|ref|ZP_07929380.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313690571|gb|EFS27406.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 235

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           + GV+ V   L N  + I +L +   N   +L+    +       +     +        
Sbjct: 4   IIGVNPVIEVLQNKEKNIEKLEMFKGNKDEKLNKIKKIASERNIKIFYTDKKI------- 56

Query: 108 EAVHQGLALETAPLLS-----PTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +           L+ +      ++++LD + DP N GA++RSA  F   
Sbjct: 57  -ENSQGVAVYISEYDYYVEFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVK 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  +R +   +  + K+++GA+EH+  ++++N+++AL K+    +   G   +  K  
Sbjct: 116 GIIIPERNAVRVNETVVKTSTGAIEHVDIVKVTNISEALLKLKKLDYWVYGAEGEGSKDY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E    + AL+LG+EG G+R K +E    +  + M G I +LNVS A  + L
Sbjct: 176 SKEKYPSRTALVLGSEGNGIRKKVKENCDVLIKIPMYGKINSLNVSVAGGIIL 228


>gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301]
 gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp.
           longum F8]
 gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. longum JDM301]
 gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
          Length = 330

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++           R      ++ +  +  +  S   +  +YG ++V  AL   
Sbjct: 25  TPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84

Query: 65  -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                  +++      R      +   +   +       +D+I  +   HQG+ L+  P 
Sbjct: 85  VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDPF 143

Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +L+ + +                       L + LD V DP N+GA++RSA AF  +
Sbjct: 144 QYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 203

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R S S +A   K ++GA  H+P  R+ NLT AL+ +   G+  +GL     K +
Sbjct: 204 GVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKLV 263

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E   ++D + ++LG+EG GL    +ET  ++A + +   +++LN S AA ++LY   N 
Sbjct: 264 GETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNA 323

Query: 280 FAK 282
             K
Sbjct: 324 RRK 326


>gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 332

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 11/277 (3%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIF 69
           K  + ++ + A   +     + + S + +    +  +   + G ++V  AL        F
Sbjct: 49  KRKAAEERYAAAGGKGRPGVRAVGSNSNRKSPKASDDTETVTGRNSVLEALRAKIPATAF 108

Query: 70  QLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            +        R+    ++      PV  V    +D++ G + VHQG+AL+  P       
Sbjct: 109 YIAQRVEMDDRVKEMLSIATNRGIPVLEVTRPELDRMAGFDGVHQGVALKVPPYTYAHPQ 168

Query: 128 AVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +           LL+ LD V DP N+GAI+RS  AF   G+I  +R S S ++   K++
Sbjct: 169 DLLEQIIDRGEVPLLVALDGVTDPRNLGAIIRSTGAFGGQGLILPQRRSASVNSAAWKTS 228

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKG 239
           +GA   IP    +NLT  L++    G   +GL+ D    L   E+ +  + +++G+EGKG
Sbjct: 229 AGAAARIPVALAANLTATLKEFKKQGVFVLGLAGDGDVSLPALELADRPVVIVVGSEGKG 288

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L     ET   +  + +    ++LN   AA+VALY  
Sbjct: 289 LSRLVTETCDQVVSIPISTATESLNAGIAASVALYQV 325


>gi|148284217|ref|YP_001248307.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
 gi|146739656|emb|CAM79445.1| tRNA/rRNA methyltransferase [Orientia tsutsugamushi str. Boryong]
          Length = 242

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 6/236 (2%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           +  ++ +++G H   AALNNP R I  +  T++    L       +    K V  + + +
Sbjct: 2   TDKKSYYIFGTHASLAALNNPFRVIRYIYCTESCFLSLSKLIQKHN---YKIVTTKFLHQ 58

Query: 104 IVGKEAVHQGLALETAPLLS---PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           ++G + VHQG+A+ T PL       +D    +  + +LD + D +N+GAI+RSA AF   
Sbjct: 59  LLGSQIVHQGIAVNTIPLTINGIKNIDLNTPNYKIAILDQLLDHNNLGAIIRSAAAFDIS 118

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +  S  E+  +AK A GALE I  +++ NL + +  +    F  IGL  +    L
Sbjct: 119 TIILPENNSIEENGTIAKIAVGALEKINLVKVKNLYNTINYLKKHEFWIIGLDLNDSNQL 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            ++  + K A +LG+E KGLR  T++    +  + M    ++LNV+ AA +  Y +
Sbjct: 179 TEQTFHSKTAFVLGSENKGLRNLTRQQCDFLIKIPMSHKTESLNVAGAATIIFYES 234


>gi|190573530|ref|YP_001971375.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190011452|emb|CAQ45070.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 247

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 13/243 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++ GV+ V++++ N +  + ++L    A    L  ++ +A       V+ V  Q +D  V
Sbjct: 7   WIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARR-KGIDVRKVNSQALDG-V 64

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFS 158
           G    HQG+A   A   + + + +           LL+VLD V DPHN+GA LRSA A  
Sbjct: 65  GGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGACLRSAAAAG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S + +A + K+++GA + IP + ++NL+  L+ +   G    GL+ ++  
Sbjct: 125 ATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIYGLAGEATA 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L Q      IAL+LG E  GLR  T+E    +  + MPG I++LNVS AA V+L+    
Sbjct: 185 SLYQLDLKGNIALVLGGEADGLRRLTRENCDGLVKIPMPGEIESLNVSVAAGVSLFEAVR 244

Query: 279 HFA 281
              
Sbjct: 245 QRG 247


>gi|83591297|ref|YP_431306.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
           39073]
 gi|83574211|gb|ABC20763.1| RNA methyltransferase TrmH, group 3 [Moorella thermoacetica ATCC
           39073]
          Length = 246

 Score =  219 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 13/242 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L G + V  AL    R + ++L     +        +       P++ V    ++K+ G 
Sbjct: 5   LAGRNQVREALR-AGRPLNKILLAPHLEGQAIGEIINLARERGVPLQRVNRAALEKLAGH 63

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    A      L+ +            L++LD V DPHN+GAILRSA A    
Sbjct: 64  H--HQGVVALAAAREYADLEDLLARAGEAGEPPFLIMLDRVEDPHNLGAILRSAEAVGAH 121

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R     +A +A++A GA E++P  R++NL   L+++   G   IG + D+ +  
Sbjct: 122 GVIIPRRRGVGLTAAVARAAVGAQEYVPVARVTNLARTLEELKGKGLWAIGAAGDAGQEA 181

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + L+LG+EG+GL P  +       HL M G I +LNV+ AA V +Y      
Sbjct: 182 FNADFTVPLVLVLGSEGRGLSPLVRSRCDFTVHLPMRGRINSLNVATAATVLMYEVLRQR 241

Query: 281 AK 282
            +
Sbjct: 242 GQ 243


>gi|58581707|ref|YP_200723.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623620|ref|YP_450992.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58426301|gb|AAW75338.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367560|dbj|BAE68718.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 255

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALE-------TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A             L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAVARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S S +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSASVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 VVRQR 246


>gi|58579305|ref|YP_197517.1| putative RNA methyltransferase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417931|emb|CAI27135.1| Hypothetical tRNA/rRNA methyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 249

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 140/247 (56%), Gaps = 14/247 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTVPPQ 99
            + +++YG H   AAL N +RK  +LL T+N       + ++       + +P K V   
Sbjct: 3   KKKIWIYGKHPCVAALQNINRKCHELLFTENFIKHNNGIQKIRELIKQKNIYP-KQVNLN 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSA 154
           TI+ ++   + HQG+AL+ + + + +++ V ++       +++LD V D +N+G+I+RSA
Sbjct: 62  TINSVLPPNSNHQGIALQVSIVDTVSIEDVLSNIPTEISTIILLDQVTDVYNVGSIIRSA 121

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           V F+   +I     SPSE+  ++K++SGA++ IP + + N+++A+  +   G+   G  +
Sbjct: 122 VCFNVHAVILPYYNSPSENCGMSKTSSGAIDMIPIVYVVNISNAIHTLKKAGYWCYGFDA 181

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +PL +   ++K  +I G+E KGLR  T+E    +  +     I +LNVSNAAA+ALY
Sbjct: 182 KQGEPLHKIKLDNKRLVIFGSENKGLRTLTKENCDFLLKIATSERIDSLNVSNAAAIALY 241

Query: 275 --ITQNH 279
               QNH
Sbjct: 242 SIFIQNH 248


>gi|325287036|ref|YP_004262826.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
           DSM 7489]
 gi|324322490|gb|ADY29955.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga lytica
           DSM 7489]
          Length = 245

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  A+N      KIF     K  L R   +        +  VP + ++++    
Sbjct: 7   IYGIRAIIEAINANEALDKIFVQKGLKGDLFRELENLARKKGISISYVPVEKLNRLTKN- 65

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+     + +       + + L ++LD ++D  N GAI+R+A     DG
Sbjct: 66  -NHQGVVANISPITFHNFEELVESVIQKKEAPLFLLLDQLSDVRNFGAIIRTAECTGVDG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+ +   +A   K+++GA   +P  +++++ DA+  + + G + I  S  ++  + 
Sbjct: 125 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVNHIKDAVHYLQASGVKIIAASEKTENTIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  A+I+G+E  G+ P   + A   A L + G I++LNVS A  V LY      
Sbjct: 185 DVSFKEASAIIMGSEDVGISPSILKAADHTAKLPLLGEIESLNVSVACGVFLYEAVRQR 243


>gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 258

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 18/273 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EK+ S+ + H        +++KK+Q+     ++  Q     L G H V+ A+ +   +I 
Sbjct: 2   EKLTSIHNQHV-------KNWKKLQT----KKYRRQTGTYLLDGWHLVNEAVQSGV-QIL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDA 128
           QL+ T   LA      +L +   V  V  + +  I       QG+A     P      D 
Sbjct: 50  QLIGTSEQLAAHSDLNSLTNE--VYEVTEEVMQHITDT-VTPQGIAAVVPLPDAHKVPDM 106

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                  + LD V DP N+G ++R+A A    G++ + R +   S  + +S  G+  H+ 
Sbjct: 107 ESLHGGWLFLDRVQDPGNVGTMVRTADAAGFAGVVVSHRSADIFSPKVIRSMQGSQFHLK 166

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +L   ++   +      G   +   K           ALI+G EG+G+  +    
Sbjct: 167 LYE-GDLAKWIEDFKTVNAPIYGTQLNPQAKSFRDAEPGKTFALIMGNEGQGMSDQLLSQ 225

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            T+  ++ M G  ++LNV+ +A + ++    + 
Sbjct: 226 TTANLYIPMRGQAESLNVAVSAGILMFQLNKNL 258


>gi|325962200|ref|YP_004240106.1| rRNA methylase, , group 3 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468287|gb|ADX71972.1| rRNA methylase, putative, group 3 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 329

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 130/301 (43%), Gaps = 24/301 (7%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----LFLYGVHTV 57
              + K  ++ +    +H AK        K+           S P+       + G ++V
Sbjct: 30  KGPTPKAEDRPYH--KAHKAKQLAERSAAKRNPGARSAGAAKSGPKGRATEEVVTGRNSV 87

Query: 58  SAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
             AL    P++ +   +  + +   +           P+       +D++  ++AVHQGL
Sbjct: 88  VEALRAGIPAKALHVAIRIEMDDRVKESLKIAAERGIPLLETGKPELDRMT-EDAVHQGL 146

Query: 115 ALETAPLLSPTLDAVR-------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            L+  P        +              N+ L + LD + DP N+GAI+RS  AFS  G
Sbjct: 147 VLQIPPYDYQDAYELAEETVAKWKKGHVANAPLFVALDGITDPRNLGAIIRSVSAFSGHG 206

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL- 220
           +I  +R S   +A   K+++GA   +P  R SNL +AL++  + G   +GL  D    L 
Sbjct: 207 VIVPERRSVGVTASAWKTSAGAAVRVPVARASNLNNALKQFKNMGIFVLGLDGDGDVSLP 266

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +  + + +++G+EGKGL    +E    +  + +   +++LN S A  ++LY      
Sbjct: 267 DLTLATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQR 326

Query: 281 A 281
           A
Sbjct: 327 A 327


>gi|315281992|ref|ZP_07870501.1| RNA methyltransferase [Listeria marthii FSL S4-120]
 gi|313614371|gb|EFR88006.1| RNA methyltransferase [Listeria marthii FSL S4-120]
          Length = 252

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +       +W   L   + V  +  + I  ++ +    QG+    A    P +  +
Sbjct: 50  ELLVSSGVSVPEEW---LKGDYDVFEISAE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D ++  +  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ ++L D +  +   G   IG   D   K L    K + +AL++G EG G+ P+ Q+  
Sbjct: 164 IQ-ADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISPELQDRL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|83816243|ref|YP_445585.1| RNA methyltransferase [Salinibacter ruber DSM 13855]
 gi|83757637|gb|ABC45750.1| RNA methyltransferase, TrmH family, group 3 [Salinibacter ruber DSM
           13855]
          Length = 253

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 16/243 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L G   V  AL      I +++  ++   A              PV+ VP   + +    
Sbjct: 9   LIGRGPVLEALKRDDLGIEKVMLKQDVSGAQIGAIRSIADDRGTPVQYVPEARL-RHESD 67

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS------------QLLMVLDHVNDPHNIGAILRSAV 155
            A HQG+   TAP+    +DA+ +              +L+V+D V DP N GA+LRSAV
Sbjct: 68  GATHQGVVAITAPIRYREVDAMLSDIAPTWDAVQTAQPMLLVVDRVTDPRNFGAMLRSAV 127

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG+I   R     +A   K+++G    IP  R  +L   L ++   G+   G    
Sbjct: 128 AAGTDGVIVPTREMAPLNAAAIKASAGTAPRIPIARTDDLPRVLTQLKERGYFVYGAEGT 187

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++ PL     +  +A++LG+EG+GL P+  E    +  + M G  ++LNVS A  + ++ 
Sbjct: 188 AETPLWDADWDRPVAVVLGSEGQGLAPEVAEACDELLSIPMRGPAESLNVSVATGLLVFE 247

Query: 276 TQN 278
              
Sbjct: 248 AAR 250


>gi|257125181|ref|YP_003163295.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
           C-1013-b]
 gi|257049120|gb|ACV38304.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia buccalis
           C-1013-b]
          Length = 232

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 17/232 (7%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G++ V   L +     K+      K    +   +        +     +T        
Sbjct: 4   IIGINPVIEVLKSDKNIEKLEVYKKIKKETIKEILNLASKRNIKIFYTDRRT-------- 55

Query: 109 AVHQGLALETAPLLS-----PTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              QG+    +           L+ +  +   +++VLD V DP N GAI+RSA  F  DG
Sbjct: 56  ENSQGVVALVSEFDYYVDFTAFLEKLLRKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDG 115

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II   R S   +  + KS++GA+EH+  ++++N++D + K+  +G+   G  +D +    
Sbjct: 116 IIIQDRNSVKVTETVVKSSTGAIEHVDIVKVTNISDTIDKLKKYGYTVYGAEADGQNYYY 175

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           QE   +K  L+LG+EG G+R K +E    +  +H+ G I +LNVS A  + L
Sbjct: 176 QENYPEKACLVLGSEGNGMRKKVKEHCDKIVKIHLKGEINSLNVSVAGGIIL 227


>gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 257

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 107/255 (41%), Gaps = 6/255 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K++    +KS+  ++     + G+     A   P  +I ++  ++    R   + N
Sbjct: 7   NAQVKELLQLQKKSKVRNERNIFLVEGIKMFFEA---PRNRIEKVFISETLFDRKKQELN 63

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPH 145
           L     V+ +  +    +       QG+        +   +        LM+LD++ DP 
Sbjct: 64  L-DGLKVEILSDKVFSHVSDT-KTPQGILCIMRQKKTKLEEIFAQKPEHLMILDNLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A      GII +K      +    +S  G++  +P++ + +L + ++++   
Sbjct: 122 NLGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIYRMPFLYVEDLENTIEEVKKQ 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             +        K   ++E      A ++G EG GLR +  E A     + M G +++LN 
Sbjct: 182 DIKVYAAHLQGKNNYDEENYKTGCAFLIGNEGNGLRDEIAEKADIWVKIKMHGEVESLNA 241

Query: 266 SNAAAVALYITQNHF 280
           + A+++ ++      
Sbjct: 242 AIASSILMFEVCRQR 256


>gi|289663083|ref|ZP_06484664.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289670071|ref|ZP_06491146.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 249

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAEGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGESDGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 VVRQR 246


>gi|312135023|ref|YP_004002361.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
           OL]
 gi|311775074|gb|ADQ04561.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor owensensis
           OL]
          Length = 270

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 117/285 (41%), Gaps = 26/285 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  IS +++E I  +K  H  K R   R +                    + G+  V  A
Sbjct: 6   VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46

Query: 61  LNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGL 114
           ++     I  ++ ++ A  R          L     +K V   P  + + +   +  QG+
Sbjct: 47  IDYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGI 106

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             E    +   ++ ++N + ++V D + DP N+G ++R A AF  D ++TTK      + 
Sbjct: 107 LAECN-FVDKDINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              ++  G+L H+  +R +     ++ +    F     +      + + + + K  +++G
Sbjct: 166 KTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIG 225

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E +G+     + A     + M G  ++LN + AA+V LY  +  
Sbjct: 226 NESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASVVLYELRKR 270


>gi|222529198|ref|YP_002573080.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456045|gb|ACM60307.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor bescii DSM
           6725]
          Length = 270

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 117/285 (41%), Gaps = 26/285 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  IS +++E I  +K  H  K R   R +                    + G+  V  A
Sbjct: 6   VEFISSRENECIKRVKKLHDKKYREEFRSF-------------------IIEGLKLVKEA 46

Query: 61  LNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVP--PQTIDKIVGKEAVHQGL 114
           +      I  ++ ++ A  R          L     +K V   P  + + +   +  QG+
Sbjct: 47  IEYQIECINLVIFSQQAKDRYQEFYWECKRLLQDGKIKRVIEIPDKLFEYITTTSTPQGI 106

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             E    +   ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK      + 
Sbjct: 107 LAECN-FVDKDINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              ++  G+L H+  +R +     ++ +    F     +      + + + + +  +++G
Sbjct: 166 KTTRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFCIVIG 225

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 226 NESEGVSDSFAKVATRKIKIPMVGETESLNAAVAASIVLYELRKR 270


>gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
 gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
          Length = 253

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 106/255 (41%), Gaps = 16/255 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           + +KK+Q+     +         + G H V  AL      + ++L  +       W+ + 
Sbjct: 13  KQWKKLQT----KKERENSGTYIVEGFHLVEEALKYKG-VVQEILVKEGVDLPSSWNMD- 66

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V  +       +   E   QG+           L+     +  ++LD V DP N+
Sbjct: 67  --EVSVIALSEDAAKAVSATE-TSQGVFAVCQQNQIGDLEL--QGKTFLMLDEVQDPGNL 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A   D I+  +  +   +  + +SA G+  H+P I+  NL+  + ++ +   
Sbjct: 122 GTIIRTADAAGIDVIVLGEGTADLYNPKVLRSAQGSHFHLPIIK-GNLSSWIDRLRTEEI 180

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G + ++          D  ALILG EG G+ P   ++     ++ + G  ++LNV+ 
Sbjct: 181 PVYGTALENSAAYHTVNSTDSFALILGNEGNGVSPSILDSTDQNLYVPIYGKSESLNVAI 240

Query: 268 AAAVALYITQNHFAK 282
           AA + +Y    H  K
Sbjct: 241 AAGILMY----HLKK 251


>gi|58698910|ref|ZP_00373774.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58534575|gb|EAL58710.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila ananassae]
          Length = 236

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGL 114
            +AL N +R+  +LLAT+N       +           V+ V  + ++ ++ K A HQG+
Sbjct: 1   MSALKNKNRRCIELLATENFYREHKKEIRQCVDSKGIKVRLVESKILNDVLPKGANHQGI 60

Query: 115 ALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           AL  AP+L         ++  +S  +++LD V D HNIG+ILR++  F+ D ++    +S
Sbjct: 61  ALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHNHS 120

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDK 228
           PSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G   ++K+ +++      K
Sbjct: 121 PSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKK 180

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +I G+E KG+R   +E    +  + M   I +LNVSNAAA+ LY
Sbjct: 181 RVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226


>gi|114766067|ref|ZP_01445077.1| RNA methyltransferase, TrmH family, group 3 [Pelagibaca bermudensis
           HTCC2601]
 gi|114541702|gb|EAU44742.1| RNA methyltransferase, TrmH family, group 3 [Roseovarius sp.
           HTCC2601]
          Length = 259

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 135/239 (56%), Gaps = 9/239 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
            ++++     E ++L+G+H V  AL NP R+  +L+ T NA A+L  DA        +  
Sbjct: 11  KEQAKKARSAETVWLFGLHAVRDALLNPRREKLRLILTPNAEAKLA-DAVAEAGIAPEIH 69

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAIL 151
            P+     +  ++VHQG ALE  PL    LD V          L++LD V+DPHN+GAIL
Sbjct: 70  DPRKFGAPLDPQSVHQGAALEVKPLDWGRLDDVAVRDDDRPARLVLLDRVSDPHNVGAIL 129

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA  F    +I  + +S  E+  LAK+ASGALE  PY+R  NL D ++ + + G+  +G
Sbjct: 130 RSAEVFGAQAVIGVQHHSAPETGALAKTASGALERQPYLRERNLADTIRTLQTMGYLVLG 189

Query: 212 LSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L  +++  +EQ    +++  +AL+LGAEG GLR KT+ T   +  +   G   +LNVSN
Sbjct: 190 LDGEAEGTIEQALEGLRDRPVALVLGAEGPGLREKTKTTVDKLVRIDFAGGFGSLNVSN 248


>gi|313633669|gb|EFS00423.1| RNA methyltransferase [Listeria seeligeri FSL N1-067]
 gi|313638236|gb|EFS03476.1| RNA methyltransferase [Listeria seeligeri FSL S4-171]
          Length = 252

 Score =  219 bits (559), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  A+      + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEAIRQDGL-VV 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +K      +W   L   + V  +  + I  ++ +    QG+         P +  +
Sbjct: 50  ELLVSKGVSVPEEW---LKGNYDVFEISTE-ISHLISETMTEQGVFAVVT-TTEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D +I  +  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ +NL D +  +   G   IG   D   K L    K D +ALI+G EG G+  + Q   
Sbjct: 164 IQ-ANLFDWVANLEEEGVPVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGISEELQARL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGKSESLNVAVAAGILLYGLRK 252


>gi|289434467|ref|YP_003464339.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170711|emb|CBH27251.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 252

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 119/270 (44%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  A+      + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEAIRQDGL-VV 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +K      +W       F + T     I   + +    QG+         P +  +
Sbjct: 50  ELLVSKGVSVPEEWLKGNYDIFEIST----EISHFISETMTEQGVFAVVT-TTEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D +I  +  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ +NL D +  +   G   IG   D   K L    K D +ALI+G EG G+  + Q   
Sbjct: 164 IQ-ANLFDWIANLEEEGVPVIGAVLDEQAKSLNDISKRDTLALIVGNEGNGISEELQARL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGKSESLNVAVAAGILLYGLRK 252


>gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 329

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 27/298 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++           R      ++ +  + ++ TS+ ++L + G + V  AL
Sbjct: 20  KGPTPKAEDRVYHKAYKAKKAADRRKMADPRLAARRRVAKFTSESDDLVI-GRNAVLEAL 78

Query: 62  NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               P+  ++       +   R        H   +       +D+I  + + HQG+ L+ 
Sbjct: 79  RCGVPATTLYVAARIEHDDRTREIVRLAGIHGLHLLEADRLEMDRIA-RSSNHQGVVLKA 137

Query: 119 APLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAF 157
            P    +L  + +                       L + LD V DP N+GA++RSA AF
Sbjct: 138 QPFQYSSLAELVDRADKKARAMEAADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAF 197

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ ++GL     
Sbjct: 198 GANGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGD 257

Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + E   + D + ++LG+EG GL    +E   S+A + M  ++++LN S AA + LY
Sbjct: 258 ALVGETGFETDPLVVVLGSEGNGLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 315


>gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
 gi|153794471|gb|EDN76891.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
          Length = 275

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 107/273 (39%), Gaps = 14/273 (5%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
                  +++  K++    +KS+  S+       G+  V      P  ++  L  +++  
Sbjct: 4   RKMITSTSNQRVKELSQIQKKSKIRSREGIFIAEGIRMVRE---TPHERLVGLYFSESFE 60

Query: 79  ARLDW---------DANLPHPFPVKT-VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            +            D  +      KT +    +   V      QG+      +       
Sbjct: 61  KKYGKEVLDVISGGDLKVREQIRKKTEILSDAVFSYVSDTKTPQGVLAVVHQMEYTLGQM 120

Query: 129 VRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +   LM+LD++ DP N+G I R+A A    GII ++      +    +S  GAL  +
Sbjct: 121 TEGAIPHLMILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRM 180

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P++ + +L + +  +     ++     D K   ++E      A ++G EG GLR +  + 
Sbjct: 181 PFVYVEDLRETIHTLKEKNIKSYAAHLDGKNTYDKEDYRQGTAFLIGNEGNGLREEIAQC 240

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A +   + M G +++LN + AA V ++      
Sbjct: 241 ADTWIRIPMCGQVESLNAAVAATVLMFEVSRQR 273


>gi|21242319|ref|NP_641901.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|52783317|sp|Q8PM64|RLMB_XANAC RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|21107751|gb|AAM36437.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 249

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLVEAAAGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
 gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
          Length = 259

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 118/274 (43%), Gaps = 20/274 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EK+ S+K++         +++KK+Q+     +   Q     L G H V+ AL    R + 
Sbjct: 3   EKLTSVKNARV-------KEWKKLQT----RKGRKQQGRYLLEGWHLVNEALQAD-RGLH 50

Query: 70  QLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           +L+ TK  LA   D  A       V +V P  +  +  +    QG+ +  A L      A
Sbjct: 51  ELIGTKEELAAHPDIVARFKE---VYSVTPAIMAAVT-ETVTPQGI-MVVADLPDLHQVA 105

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              S   + LD V DP N+G ++R+A A    G++     +   S  + +S  G+  H+ 
Sbjct: 106 TDLSGAWLFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLA 165

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +L    + +   G+   G   + + K           AL++G EG+G+  +  + 
Sbjct: 166 LYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQ 224

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            T+  ++ M G  ++LNV+ +A + ++   +   
Sbjct: 225 TTANLYIPMRGQAESLNVAVSAGILMFELADALN 258


>gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
           L2-32]
 gi|154083727|gb|EDN82772.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
           L2-32]
          Length = 330

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 27/298 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++           R      ++ +  + ++ TS+ ++L + G + V  AL
Sbjct: 22  KGPTPKAEDRVYHKAYKAKKAADRRKMADPRLAARRRVAKFTSESDDLVI-GRNAVLEAL 80

Query: 62  NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               P+  ++       +   R        H   +       +D+I  + + HQG+ L+ 
Sbjct: 81  RCGVPATTLYVAARIEHDDRTREIVRLAGIHGLHLLEADRLEMDRIA-RSSNHQGVVLKA 139

Query: 119 APLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAF 157
            P    +L  + +                       L + LD V DP N+GA++RSA AF
Sbjct: 140 QPFQYSSLAELVDRADKKARAMEAADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAF 199

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ ++GL     
Sbjct: 200 GANGVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGD 259

Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             + E   + D + ++LG+EG GL    +E   S+A + M  ++++LN S AA + LY
Sbjct: 260 ALVGETGFETDPLVVVLGSEGNGLSRLVREACDSIAGIPMSNMVESLNASVAAGITLY 317


>gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046]
          Length = 253

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 7/250 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K  +    + +   +     + G H V  AL +   +I Q++        L W  
Sbjct: 8   QNALVKHWKKLVTQRKEREKTGEYIVEGFHLVEEALKH-KDQIVQIIVRDGVDLPLLWAI 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +      V     + I +        QG+          + D   + + ++++D V DP 
Sbjct: 67  DEVVLVHVNEAVSKEIAE----TENSQGVFAHCK-QRQISEDEQFDWKKVLLVDAVQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A A   D ++  K    + +    +SA G+  HIP +R  +L + ++ + + 
Sbjct: 122 NIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSAQGSHFHIPVVR-GDLMEWVENLQAD 180

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G +  G S D     ++   +D  ALI+G EG G+ P+          + + G  ++LNV
Sbjct: 181 GIRVFGTSLDESISYKKVEPSDSFALIVGNEGSGINPQILAKTDQNIIIPILGGAESLNV 240

Query: 266 SNAAAVALYI 275
           + A  + LY 
Sbjct: 241 AVATGILLYA 250


>gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 333

 Score =  219 bits (558), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/295 (25%), Positives = 136/295 (46%), Gaps = 40/295 (13%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNN- 63
           +  A+ R  H+ YK+ Q+ N++              + +S+ ++L + G + V  AL   
Sbjct: 25  TPKAEDRVYHKAYKEKQATNRRKMADPRLAARRRAAKFSSESDDLVI-GRNAVLEALRCG 83

Query: 64  -PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            P+  ++       +   R        H   +       +D+I  + + HQG+ ++  P 
Sbjct: 84  VPASTLYVAARIEHDDRTREIIRLAGIHGLNLMEADRLEMDRIA-RSSNHQGVVMKAQPF 142

Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +L  +                         L + LD V DP N+GA++RSA AF  +
Sbjct: 143 QYSSLAELVERADKKSRAMEAANSASARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 202

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ ++GL       +
Sbjct: 203 GVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALV 262

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E   + D + ++LG+EG GL    +ET  S+A + M  ++++LN S AA + LY
Sbjct: 263 GETGFETDPLVVVLGSEGNGLSRLVRETCDSIAGIPMSNMVESLNASVAAGITLY 317


>gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
 gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
          Length = 264

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 98/255 (38%), Gaps = 3/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+  S   K ++  +     + GVH V  A  + +     +  ++  +       
Sbjct: 10  QNERVKQWASLLDK-KYRDRTGLFIIEGVHLVQEAFKSSAAVQCVVYNSERGIPHELEQL 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                        Q + K  G +     +      L        RN+ L++VLD V DP 
Sbjct: 69  AREGGAEWVQATTQVMAKCTGTDTPPP-VFAVLEKLKRDDTALFRNNSLVVVLDGVRDPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA A   D ++  K      +    +S  G+L H+P I  ++L + L +  S 
Sbjct: 128 NVGTIIRSADAVGADAVVLGKGSVDLYNPKTVRSTMGSLFHLPIIE-ADLAELLPEAQSK 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + +G S  +              L++G E +GL    +        + M G  ++LNV
Sbjct: 187 GIKLVGTSLQATHTCYTYDWTAGTWLLMGNESEGLSDAVRLAVDESVIIPMQGEAESLNV 246

Query: 266 SNAAAVALYITQNHF 280
           + AA V LY      
Sbjct: 247 AMAATVLLYEAVRQR 261


>gi|229823223|ref|ZP_04449292.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
 gi|229787389|gb|EEP23503.1| hypothetical protein GCWU000282_00521 [Catonella morbi ATCC 51271]
          Length = 255

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 124/278 (44%), Gaps = 25/278 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++ KI               + +KK+ +    ++   +     + G H V  A
Sbjct: 1   MEVIQSKQNPKI---------------KAWKKLAT----AKGRQKAGQYLIEGTHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +    +  L+AT +    L    +     P+  V P+ +  +  +    QG+      
Sbjct: 42  LKSGQ-PVRHLVATLDYD--LSQLPDQALSLPLLLVSPELLKDL-SETPTPQGIMA-IID 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L S  LD   + Q  ++LD V DP N+G ++R+A A + DG+I  K      +  + +++
Sbjct: 97  LPSSPLDWQPSGQRYLILDAVQDPGNLGTLIRTADAAAYDGVILGKGTVDVYNDKVLRAS 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG 239
            G+L H+  + +  L +A     + G   +  +     K  ++   N K+AL+LG EG+G
Sbjct: 157 QGSLWHLEVVSLDLLQEARPAFEAAGIPWLVTALHQEAKAYQEVPANQKLALVLGNEGQG 216

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +     + A    ++ MPG  ++LNV+ A  + ++  Q
Sbjct: 217 VSEAVIQVADQTIYIPMPGQAESLNVAVAGGILMFYFQ 254


>gi|325954869|ref|YP_004238529.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
           16922]
 gi|323437487|gb|ADX67951.1| RNA methyltransferase, TrmH family, group 3 [Weeksella virosa DSM
           16922]
          Length = 249

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+ +  + I +L   K     +          +  P   VP + ++++ GK
Sbjct: 7   IFGLRPIIEAIESG-KTIDKLFVQKGLQGEIFSQLRKLIAQYEIPTSYVPVEKLNRLTGK 65

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    +P+   +++ V         +  L++LD V+D  N GAI R+A     D
Sbjct: 66  --NHQGVYAFLSPIEFDSIENVLPQIYERGKTPFLLILDRVSDVRNFGAIARTAECVGID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II   + S S +A   K+++GAL +IP  + +NL   +  +   G      S  S   L
Sbjct: 124 AIIIPYKGSASVNADAVKTSAGALYNIPICKENNLKKTVDYLQQSGIVLAAASEKSDTYL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   +A+I+G+E  G+     + +  +  L M G   +LNVS A    LY      
Sbjct: 184 YDVDFTTPLAIIMGSEEDGVSDALLKVSDYIIKLPMAGQTASLNVSVACGAILYEAVRQR 243


>gi|126662270|ref|ZP_01733269.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
 gi|126625649|gb|EAZ96338.1| putative tRNA:rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
          Length = 244

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+ N  ++I ++   K+A   L  D       +      VP + ++++   
Sbjct: 7   IFGIRAIIEAI-NAKKEIDKVFVQKDAQGDLMQDLMKTMKRNNINFSYVPVEKLNRLTPN 65

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG     AP+   +L+ +           L ++LD ++D  N GAI+R+A     D
Sbjct: 66  --NHQGAVATIAPISFVSLETLVEGVIETGKKPLFLILDQLSDARNFGAIIRTAECTGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+ S   +    K+++GA+ ++P  ++ ++ DA+  +   G +T+  +  ++  +
Sbjct: 124 GIIIQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFYLQGSGIKTVAATEKTENHI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N+ +A+I+G+E +G+ P   +     A L M G I++LNVS A    LY      
Sbjct: 184 YDINFNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIESLNVSVACGAFLYEALRQR 243


>gi|225572770|ref|ZP_03781525.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039827|gb|EEG50073.1| hypothetical protein RUMHYD_00961 [Blautia hydrogenotrophica DSM
           10507]
          Length = 260

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 101/257 (39%), Gaps = 4/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +    QK++           G+     A   P   I ++    + L       
Sbjct: 6   SNGQIKNIIQLQQKTKARRDRGLFVAEGLKMFQEA---PDSWIEKVYIA-DRLYEEQEIQ 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV+ V  +   +I   +     L L   P         + + LLMVL+ + DP 
Sbjct: 62  KRLGSLPVEIVDDRIFRQISDTKTPQGILCLLRCPHYRLEKILEKENPLLMVLEDLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A     DGI+ +K      +  + +S  G++  +P++ I N+ +AL+ +   
Sbjct: 122 NVGTIIRTAEGAGADGILLSKNTVDIFNPKVIRSTMGSIYRMPFVYIENMEEALRLLKKK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              T       K   + E      A  +G EG GL  +  E A     + M G +++LN 
Sbjct: 182 KVSTYAAHLQGKNTYDGESYLRGTAFFVGNEGNGLSRQLSEKADCWIRIPMEGQVESLNA 241

Query: 266 SNAAAVALYITQNHFAK 282
           + AA + +Y       +
Sbjct: 242 AMAAGILMYEAGRQRRR 258


>gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp.
           lactis BB-12]
 gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 331

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 139/306 (45%), Gaps = 27/306 (8%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
              + K  ++++        +  +  R   ++ +  + +  TS  ++L + G ++V  AL
Sbjct: 22  KGPTPKAEDRVYHKAYKAKKQAEKRQRSDPRLAARRRAAHFTSNSDDLVI-GRNSVLEAL 80

Query: 62  NN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               P+  ++       +   R        H   +       +D+I  +   HQG+ L+ 
Sbjct: 81  RVGVPASVLYVANRIEHDDRTREIVRLAGQHGLNLLEADRLEMDRIA-RSGNHQGVILKA 139

Query: 119 APLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAF 157
            P    +L  +                         L + LD + DP N+GA++RSA AF
Sbjct: 140 DPFQYSSLHELVERAERKARAMEMADSKASRLSARPLFIALDGITDPQNLGAVIRSAAAF 199

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             +G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ +IGL     
Sbjct: 200 GVNGVILPERRSASVNAAAWKVSAGAAAHMPIARVVNLTKAIEALKERGYYSIGLDGGGS 259

Query: 218 KPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K + E   + D + ++LG+EGKGL   T+E   ++A + +   +++LN S AA +ALY T
Sbjct: 260 KLVGETGFETDPLVVVLGSEGKGLSRLTREACDAIASIPITSAVESLNASVAAGIALYAT 319

Query: 277 QNHFAK 282
            N   K
Sbjct: 320 VNARRK 325


>gi|299535511|ref|ZP_07048832.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
           ZC1]
 gi|298728711|gb|EFI69265.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
           ZC1]
          Length = 254

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 116/275 (42%), Gaps = 24/275 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S +++         + +KK+ +     +   +     + G H V  AL N   ++ 
Sbjct: 2   KRIESTQNALV-------KYWKKLATTR---KERERSGEFLVEGFHLVEEALKN-KNQVL 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDA 128
           Q++  +     + W  +      V T   +   +        QG+      P+L    + 
Sbjct: 51  QIIVREGIDLPMLWPIDDIAIVEVSTAVAKEFAE----TETSQGVFAVCKQPVLVD--NV 104

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   + ++++D V DP NIG ++R+A A   D +I  K  +   +    ++A G+  HIP
Sbjct: 105 MTTWRKVLLIDAVQDPGNIGTMIRTADAADLDAVILGKGCADLYNPKTLRAAQGSHFHIP 164

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R  +L + +  +   G    G + D +  P          A+I+G EG G++P+    
Sbjct: 165 VVR-GDLAEWIDILQDQGVPVFGTALDEEAVPYSDIQHTGAFAIIMGNEGSGIQPQLLAM 223

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + + G  ++LNV+ A  + LY     FAK
Sbjct: 224 TDQNMIIPLFGQAESLNVAVATGIVLY----GFAK 254


>gi|251780637|ref|ZP_04823557.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084952|gb|EES50842.1| RNA methyltransferase, TrmH family [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 262

 Score =  218 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 106/258 (41%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            + +  YK+ +    + ++ ++     + G   V  A+      I   + T+    +LD 
Sbjct: 6   SKENTIYKEAKKLKDR-KNRNKINKYVIEGFRLVDEAIRAN-LDIEYFILTEIGYEKLDN 63

Query: 83  -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             D +      V  +      ++   E   QG+      + +  L+        +  D V
Sbjct: 64  YIDKDKMKKHKVFCITDTLFKELASTE-NPQGIIAIVK-MDNKNLNF--QGDFYLFCDKV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A   +GI+ +K      +    +S  G+L ++P     +    ++ 
Sbjct: 120 QDPGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPIYYDDDEFSLIKS 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   GF  I  S +S K   +E    KI L +G EG G+  +  + A     + MPG  +
Sbjct: 180 LKKDGFTLIVTSLESSKDFFKEDLKGKIILTVGNEGNGVSNEVLDLADRRVKIPMPGGAE 239

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A ++ +Y     
Sbjct: 240 SLNVAIATSIIIYEKVRQ 257


>gi|300744322|ref|ZP_07073341.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
           M567]
 gi|300380047|gb|EFJ76611.1| RNA methyltransferase, TrmH family, group 3 [Rothia dentocariosa
           M567]
          Length = 328

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 131/284 (46%), Gaps = 21/284 (7%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAALNN--PSRKIFQL-L 72
           H A   +   + +   S N+K +      +  +  + G + V  AL    P++ ++ +  
Sbjct: 44  HKAYKMKRAAERRAATSTNRKFQTRLGGKRVSDELVTGRNAVLEALRTNIPAKHLYVMSR 103

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LD 127
              +   R           P+  +P   +D++    AVHQG+A++  P   P      LD
Sbjct: 104 IEVDDRVRDIMTTANKKNLPMLEIPRSELDRLTD-GAVHQGIAMQIPPYQYPDATDLVLD 162

Query: 128 A--------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                    +++  L + LD + DP N+GAI+RS  AFS DG+I  +R S + +A   K+
Sbjct: 163 VMERWHAGKLKSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKT 222

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGK 238
           ++GA   IP    +NLT  LQ+    G   IGL       L   ++ ++ + +++G+EGK
Sbjct: 223 SAGAAARIPVAMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLCVVVGSEGK 282

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GL     ET   +  + +   +++LN + A  + LY    H A+
Sbjct: 283 GLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAE 326


>gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402]
          Length = 258

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 24/252 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQ----------LLATKNALARLDWDANLPHPFPVKTVPPQ 99
            + G H +   L     KI +            + +    +   +A       ++    Q
Sbjct: 4   IITGFHAIDEILRAEKLKIEKEKNRKPSLEIFYSKEGPRVKKILEAARKLNLKIEKQDNQ 63

Query: 100 TIDKIVGKE----AVHQGLALETAPLLSP---TLDAV------RNSQLLMVLDHVNDPHN 146
            +D I          H+G+ L T         ++D        ++S  +++LD V DPHN
Sbjct: 64  FLDSITKTLPEQLRDHRGIVLVTEAENQKKGMSIDEFFAKLAEKDSGFVVILDSVTDPHN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+I+RSA  F  DGII  +  S     +++K ++GAL  +P++ ++NL   ++++   G
Sbjct: 124 TGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEG 183

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G  +  K  L       K  LI+G+EG+G+    +ET   +  +   G + +LNVS
Sbjct: 184 FWIYGADAVGKA-LPDLTFPKKTVLIMGSEGRGMSRLVEETCDEIVSIPTKGKLDSLNVS 242

Query: 267 NAAAVALYITQN 278
            AA + LY    
Sbjct: 243 VAAGILLYEISR 254


>gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
           ATCC 35405]
          Length = 258

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 24/252 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQ----------LLATKNALARLDWDANLPHPFPVKTVPPQ 99
            + G H +   L     KI +            + +    +   +A       ++    Q
Sbjct: 4   IITGFHAIDEILRAEKLKIEKEKNRKPSLEIFYSKEGPRVKKILEAARKLNLKIEKKDNQ 63

Query: 100 TIDKIVGKE----AVHQGLALETAPLLSP---TLDAV------RNSQLLMVLDHVNDPHN 146
            +D +          H+G+ L T         ++D        + S  +++LD V DPHN
Sbjct: 64  FLDSLTKTLPEQLRDHRGIVLVTEAENQKKGMSVDEFFAKLAEKGSAFVVILDSVTDPHN 123

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G+I+RSA  F  DGII  +  S     +++K ++GAL  +P++ ++NL   ++++   G
Sbjct: 124 TGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAWVPFVEVTNLVRTVERLKKEG 183

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G  +  K  L       K  LI+G EG+G+    +ET   +  +   G + +LNVS
Sbjct: 184 FWIYGADAGGKA-LPNLTFPKKTVLIMGNEGRGMSRLVEETCDEIVSIPTKGKLDSLNVS 242

Query: 267 NAAAVALYITQN 278
            AA + LY    
Sbjct: 243 VAAGILLYEISR 254


>gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 330

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++           R      ++ +  +  +  S   +  +YG ++V  AL   
Sbjct: 25  TPKAEDRVYHKAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 84

Query: 65  -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                  +++      R      +   +   +       +D+I  +   HQG+ L+  P 
Sbjct: 85  VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDPF 143

Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +L+ + +                       L + LD V DP N+GA++RSA AF  +
Sbjct: 144 QYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 203

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R S S +A   K ++GA  H+P  R+ NLT AL+ +   G+  +GL     K +
Sbjct: 204 GVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKLV 263

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E   ++D + ++LG+EG GL    +ET  ++A + +   +++LN S AA ++LY   N 
Sbjct: 264 GETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNA 323

Query: 280 FAK 282
             K
Sbjct: 324 RRK 326


>gi|213693319|ref|YP_002323905.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 333

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 134/303 (44%), Gaps = 26/303 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++           R      ++ +  +  +  S   +  +YG ++V  AL   
Sbjct: 28  TPKAEDRVYHKAYKAKKVAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALRVG 87

Query: 65  -SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                  +++      R      +   +   +       +D+I  +   HQG+ L+  P 
Sbjct: 88  VPSSTLYIMSRIEHDDRTREIVKIAGMNGLHMLEADRLEMDRIA-RSGNHQGVILKVDPF 146

Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +L+ + +                       L + LD V DP N+GA++RSA AF  +
Sbjct: 147 QYSSLNELADRAEKKAKAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 206

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R S S +A   K ++GA  H+P  R+ NLT AL+ +   G+  +GL     K +
Sbjct: 207 GVILPERRSASVNAAAWKVSAGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKLV 266

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E   ++D + ++LG+EG GL    +ET  ++A + +   +++LN S AA ++LY   N 
Sbjct: 267 GETGFESDPLVVVLGSEGSGLGRLVRETCDAIAGIPISSSVESLNASVAAGISLYAVSNA 326

Query: 280 FAK 282
             K
Sbjct: 327 RRK 329


>gi|253580955|ref|ZP_04858217.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847797|gb|EES75765.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 257

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 104/256 (40%), Gaps = 6/256 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K +   NQK++   +       G      A   P   I ++  ++ AL+      
Sbjct: 6   NNGQVKNIIQLNQKTKARREQGLFVAEGRKMFGEA---PRDWISKVYVSE-ALSGDAELM 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDP 144
                 P + V      ++   +   QG+            D +   + L+M+L+ + DP
Sbjct: 62  AQVEKLPYEIVTDSVFRQMSDTQ-TPQGIMTVLKKPSYIMEDILGGENPLVMILEDLQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR+       G++ TK      +  + +S  G++  +P++ + ++    Q++  
Sbjct: 121 GNAGTILRTGEGAGVSGVLLTKTCVDITNPKVIRSTMGSVYRMPFLYVESVVSLAQELKD 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +T       K   +QE      A ++G EGKGL  +  ++A  +  + M G +++LN
Sbjct: 181 RNIRTFAAHLHGKNSYDQESYTGGTAFLIGNEGKGLTDEAADSADCLIRIPMCGKVESLN 240

Query: 265 VSNAAAVALYITQNHF 280
            + A+ + +Y      
Sbjct: 241 AAMASGILMYEAARQR 256


>gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
 gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
          Length = 246

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 34/280 (12%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I+  K+EK+ S K  H                   + +   +     + G+H +  AL 
Sbjct: 1   MITSIKNEKVKSWKKLH-------------------RRKERLKTNTFLIDGIHLIQEALK 41

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           +    I +L+  +          N     PV  V    + +I  +    QG+       +
Sbjct: 42  SNW-VIQELIVVEG-----YELPNDAKDVPVAYVSENVLKEI-SQTQTPQGVIAVVEMNI 94

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               +   ++ L+++LD + DP N+G I+R+A A   D ++         +  + ++  G
Sbjct: 95  PKVQE---DNNLIILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQG 151

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++ HIP    + L   +  + + GF  +  +        +   ++K+ LILG EG G+ P
Sbjct: 152 SIFHIPIYTAT-LEQEIHMLQTQGFTILATALHDAVEYTEVSVHNKVGLILGNEGAGIAP 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                A    ++ + G  ++LNV  AA + +Y    H  K
Sbjct: 211 SLLNKANQRINIPIYGKAESLNVGIAAGILMY----HLKK 246


>gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191]
 gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191]
          Length = 249

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 16/245 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTIDKI 104
             ++GVH V+  + N  R++ QL    N       +    A   +   +  +  +T+D +
Sbjct: 6   DIVFGVHAVTEVIKNRKRRVIQLYVLDNKAGHRGIEDAIKAAKRNNIKIDRMDVKTMDAL 65

Query: 105 VGKEAVHQGLALETAPL----LSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             K+  HQG+A    P+    L   +D  R     L + +D + DP N+G+I+RSA    
Sbjct: 66  T-KKGNHQGIAARVEPVKIMRLIDAIDVSRGNKKDLWIAVDEMTDPQNLGSIIRSAACLG 124

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              II   R +   +  + K ASGA E +  + ++NL  AL  +   GF   G     + 
Sbjct: 125 FSTIILPSRRTVGLTPSVYKVASGATEKVTVVEVANLATALLDLKDEGFWIYGADMGGQS 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYITQ 277
            + +   +    L++G+EG G+R KT E    +  +   PG + +LN +NAA++ ++   
Sbjct: 185 IV-KTDYSFPAVLVVGSEGTGIREKTAEHCDQVVSIPQAPGSVDSLNAANAASIIMFDM- 242

Query: 278 NHFAK 282
             FAK
Sbjct: 243 --FAK 245


>gi|296328929|ref|ZP_06871437.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296153918|gb|EFG94728.1| RNA methyltransferase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 234

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     +        
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFYTGKKI------- 56

Query: 108 EAVHQGLALETAPL-LSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D        ++  L++VLD + DP N GAI+RSA  F  D
Sbjct: 57  -ENSQGVAVYISNYDYYKDFDEAYEELTGKDKSLVLVLDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVDISKVTNLSDTINKLKKLDYWVYGAAGEANISY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E  ++K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYSNKVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|119962649|ref|YP_946696.1| TrmH family RNA methyltransferase , group 3 [Arthrobacter aurescens
           TC1]
 gi|119949508|gb|ABM08419.1| putative RNA methyltransferase, TrmH family, group 3 [Arthrobacter
           aurescens TC1]
          Length = 330

 Score =  218 bits (557), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 34/297 (11%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTS----------------QPENLFLYGVHTVSAAL 61
           +  A+ R  H+ YK  Q   + +                    +     + G ++V  AL
Sbjct: 33  TPKAEERTYHKAYKNKQLAERSAAKRGSGTRPGGAGARSGPKGRATEELVTGRNSVVEAL 92

Query: 62  NN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
               P++ +   +  + +   +           P+       +D++  ++AVHQGL L+ 
Sbjct: 93  RAGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKVELDRMT-EDAVHQGLVLQI 151

Query: 119 APLLSPTLDAVR-------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            P        +              N+ + + LD + DP N+GAI+RS  AFS  G+I  
Sbjct: 152 PPYEYEDAYDLAEETLAKWKKGHISNAPIFVALDGITDPRNLGAIIRSVSAFSGHGVIVP 211

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEI 224
           +R S   +A   K+++GA   +P  R +NL +AL++  + G   +GL  D    L +  +
Sbjct: 212 ERRSVGVTASAWKTSAGAAVRVPVARAANLNNALKQFKNMGIYVLGLDGDGDVSLPDLTV 271

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + + +++G+EGKGL    +E    +  + +   +++LN S A  ++LY      A
Sbjct: 272 ATEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEVSRQRA 328


>gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a]
 gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a]
          Length = 348

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 11/257 (4%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHP 90
           QS     R      +  + G + V  AL    P+  ++       +              
Sbjct: 91  QSGQGGPRTRRSEADELVVGRNAVVEALRAGVPASNLYVAGGLDFDERLADARRLAARAG 150

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDP 144
             V  V    +D++ G  A HQGLAL   P                   L++ LD V DP
Sbjct: 151 IAVVDVARPDLDRMCGT-APHQGLALAVPPFRYTHPDDLLARARAAAPGLVVALDGVTDP 209

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA++RSA AF   G++  +R +   +A   K+++GA   +P  R +NL   L     
Sbjct: 210 RNLGAVVRSAAAFGAHGVLVPERRAAGITAAAWKTSAGAAARLPVARATNLARTLVSYAE 269

Query: 205 WGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G   +GL++D+   +++ E+  D + L++G+EG+GL    ++       + M G +++L
Sbjct: 270 AGLFVVGLAADADTTIDELEMATDPVVLVIGSEGRGLSRLVEQRCDVTVRIPMAGAVESL 329

Query: 264 NVSNAAAVALYITQNHF 280
           N   AA +AL       
Sbjct: 330 NAGVAAGIALAEIARRR 346


>gi|167464658|ref|ZP_02329747.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381394|ref|ZP_08055393.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154621|gb|EFX46896.1| RNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 272

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 5/269 (1%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +++  Y      +   K+      + +  ++     + G+H V  AL++ +     + + 
Sbjct: 1   MQNPTYEIRSIRNPKVKEWAGLLDR-KGRNRQGKFLIEGIHLVEEALHSNAPVQTIVYSL 59

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQ 133
           +       +     H   +  V    + K        QG+            L       
Sbjct: 60  EKEFPHELYKKFSSHADWI-GVSRAVLQK-CSDTETPQGIFAVVRKSEQSLELITAEEWD 117

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V+D V DP N+G I+RSA A     I+  +      +    +S  G+L H+P I  +
Sbjct: 118 LVVVVDGVQDPGNLGTIIRSADAVGASAIVLGRGTVDIYNPKAIRSTMGSLFHLPVIE-A 176

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L D L K    G Q +     ++K   +        +I+G EGKG   +  E AT    
Sbjct: 177 DLADLLPKAVKAGIQVLCTDLKAEKNCYEIDFTIPTWIIVGNEGKGTSREAGELATQSMI 236

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + M G  ++LNV+ AA V L+       K
Sbjct: 237 IPMKGHAESLNVAMAATVLLFEASRQRMK 265


>gi|116511397|ref|YP_808613.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107051|gb|ABJ72191.1| rRNA methylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 252

 Score =  218 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 114/277 (41%), Gaps = 30/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K ++K+   +     K R+N                     +  + G H +  A
Sbjct: 1   MEIISSKDNKKVKEARKLLTKKYRKN---------------------SYLIEGFHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L      I Q+   +N LA+L              V  V    +  +   E+  QGL  E
Sbjct: 40  LKAGH-SIKQIFVEENKLAKLTAMIGSEKSLTDLSVNLVSKDVLKSLADSES-PQGLIAE 97

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            A +    +D   ++   ++L++V DP N+G ++R+A A     +I     +   S  + 
Sbjct: 98  VAKI-EEVIDF--SASKFLLLENVQDPGNVGTMIRTADAAGFSAVILLGETADLYSPKVM 154

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G+  H+   R+ N  +    +       +  +  +     + ++    AL++G EG
Sbjct: 155 RSMQGSNFHLAIARM-NEEECFAALKQAKISILTTTLSANSVSYKTVEESSFALVMGNEG 213

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+     E+A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 214 AGVSDFAVESADKLVHIDMPGQAESLNVAVAAGILIF 250


>gi|294155831|ref|YP_003560215.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291600376|gb|ADE19872.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 233

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 110/232 (47%), Gaps = 10/232 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + L + G ++V  AL N    I ++L        L  + N    FPV+ V     D++  
Sbjct: 2   KQLIMCGKNSVLDALQNNW-PIQKVLLLHENNKHLFKNVN----FPVEVVRRDKFDELT- 55

Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               HQG       +    L+++   N +L++VLDH+ DPHN+GA++RSA A     II 
Sbjct: 56  -NENHQGFIALIKEINYDNLNSLINDNPKLVLVLDHIQDPHNLGAVIRSANAAGVKHIIL 114

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223
            +  S   ++ + K +SG    I +IR+++++  +  + + GF     + D + K   Q 
Sbjct: 115 PRDRSAEINSTVIKVSSGGFIGIKFIRVNSISATITWLKNNGFWVFSSALDKNSKKHNQI 174

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               K  L++G EG G+   T        ++   G +++LNVS A  + L+ 
Sbjct: 175 NYPYKSVLVVGNEGSGVSKSTLNVCDETIYIEQFGSVQSLNVSVATGILLFE 226


>gi|296128533|ref|YP_003635783.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
           DSM 20109]
 gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
           DSM 20109]
          Length = 333

 Score =  218 bits (556), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 24/298 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------LFLYGV 54
           + K  ++ +    +H  K++          S    +R     E             + G 
Sbjct: 38  TPKAEDRPYHA--AHKRKVQAEKASGTAQTSGRPSARAARGAEGKRGGRTSSTHEVVAGR 95

Query: 55  HTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVH 111
           ++V  AL          L A   A  R     ++      P+  V    +D++    AVH
Sbjct: 96  NSVLEALRAGIPVSTVYLAARLEADDRTREIVSIAADAGHPLLEVGRAELDRLTD-GAVH 154

Query: 112 QGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           QG+AL+  P      D + ++        L++ LD + DP N+GA+LRSA AF   G++ 
Sbjct: 155 QGVALQVPPYEYLDPDDLLDTAESSQTVPLVVALDGITDPRNLGAVLRSAGAFGAHGVLV 214

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +R +   +A   K ++GA   +P  R +NLT ALQ     G   +GL +    PL    
Sbjct: 215 PERRAAGVTASAWKVSAGAAARVPVARATNLTRALQDYRRAGVFVVGLDAGGDVPLADLP 274

Query: 225 K-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              D + L++G+EGKGL    +E   ++  + +   +++LN   AA +ALY      A
Sbjct: 275 FAADPLVLVVGSEGKGLSRLVREQCDAIVSIPIASAVESLNAGVAAGIALYEVARQRA 332


>gi|297564710|ref|YP_003683682.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
           DSM 9946]
 gi|296849159|gb|ADH62174.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus silvanus
           DSM 9946]
          Length = 237

 Score =  218 bits (556), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 113/236 (47%), Gaps = 11/236 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG + V  A+     +  ++   K     L  +         + +P   +D+ V + 
Sbjct: 1   MLIYGRNPVLEAIKEG--RAVRVWVAKGVENWLIRELE-GLGADYELLPRIELDQKV-RT 56

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQGL  E A L     +A        +   LL++LD V DP N GAI+R+AVA    G
Sbjct: 57  TQHQGLVAEVAELKFSDPEAPFRLAKERQEGVLLVLLDGVTDPRNYGAIIRTAVALGAHG 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I+ +R S   S ++ K+++G    +P +++ NL   ++++   G    G S  ++K L 
Sbjct: 117 VISEERRSAPLSPLVLKASAGTAHKLPLVQVKNLPRYMEEIKKRGVWIYGASGKAQKDLT 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  +A+++G+EG+G+R   ++     A + +    ++LN S A A+ LY  +
Sbjct: 177 MLDYKRPLAIVIGSEGEGMRRLVEQRCDETARIPLGPGAESLNASVALAIFLYQAR 232


>gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
 gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a04]
 gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133C]
 gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133A]
 gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133B]
 gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a01]
 gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
 gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a01]
 gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133B]
 gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133A]
 gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133C]
 gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0133a04]
          Length = 254

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 113/282 (40%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R    +Y                    L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             + + +I +L  T+  +        +        V  + +  +       QG+      
Sbjct: 42  -ASSNAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +L D +  M   GF   G    +    L++  K +  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|311112939|ref|YP_003984161.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944433|gb|ADP40727.1| rRNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 328

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 21/284 (7%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENL---FLYGVHTVSAALNN--PSRKIFQL-L 72
           H A   +   + +     N+K +     + +    + G + V  AL    P++ ++ +  
Sbjct: 44  HKAYKMKRAAERRAATGTNRKFQTRLGGKRMSDELVTGRNAVLEALRTNIPAKHLYVMSR 103

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LD 127
              +   R           P+  +P   +D++    AVHQG+A++  P   P      LD
Sbjct: 104 IEVDDRVRDIMTTANKKNLPMLEIPRSELDRLTD-GAVHQGIAMQIPPYQYPDATDLVLD 162

Query: 128 A--------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                    +++  L + LD + DP N+GAI+RS  AFS DG+I  +R S + +A   K+
Sbjct: 163 VMERWHAGKLKSPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKT 222

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGK 238
           ++GA   IP    +NLT  LQ+    G   IGL       L   ++ ++ + +++G+EGK
Sbjct: 223 SAGAAARIPVAMATNLTRVLQQAKEQGIFVIGLDGGGDIDLPNLQLASEPLCVVVGSEGK 282

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GL     ET   +  + +   +++LN + A  + LY    H A+
Sbjct: 283 GLSRLVTETCDQIVSIPIDSAMESLNAAMAVGITLYDVSRHRAE 326


>gi|283458739|ref|YP_003363377.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134792|dbj|BAI65557.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 328

 Score =  217 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 125/283 (44%), Gaps = 21/283 (7%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHT---SQPENLFLYGVHTVSAALNN--PSRKIFQL-L 72
           H A   +   + +     N+K +      +  +  + G + V  AL    PS+ ++ +  
Sbjct: 44  HKAYKMKRAAERRAATGTNRKFQTRLGGKRASDELVTGRNAVLEALRTEIPSKHLYIMSR 103

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----LD 127
              +   R           P+  +P   +D++    +VHQG+A++  P   P      LD
Sbjct: 104 VEVDDRVREIMTIANKRNIPMLEIPRSELDRLTD-GSVHQGVAMQIPPYKYPDATDLVLD 162

Query: 128 AVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
            +            L + LD + DP N+GAI+RS  AFS DG+I  +R S + +A   K+
Sbjct: 163 TMERWHSGKLSTPPLFVALDGITDPRNLGAIIRSVSAFSGDGVIIPERRSAAVTAGAWKT 222

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGK 238
           ++GA   IP    +NLT  +Q+    G   IGL       L   E+ N+ + +++G+EGK
Sbjct: 223 SAGAAARIPVAMATNLTRVIQQAKEQGIFVIGLDGGGDIELPALELANEPLCVVVGSEGK 282

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           GL     E    +  + +   +++LN + A  + LY      A
Sbjct: 283 GLSRLVTENCDQIVSIPIDSAMESLNAAMAVGITLYDVSRRRA 325


>gi|212550964|ref|YP_002309281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549202|dbj|BAG83870.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 247

 Score =  217 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTID 102
            E   ++G   +  A+    +KI ++L  K   ++L  +           ++ VP + +D
Sbjct: 2   KEFEMIFGKRAIIEAIQ-IGKKIDKILICKGLQSKLSHELFNIIKETDILIRRVPREKLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++      HQGL    + +    L+++           L+++LD + D HN GAI RS  
Sbjct: 61  RLT--RRNHQGLVAFISTITYQKLESIVPFLYEEGKVPLILLLDGITDVHNFGAIARSCE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               + I+     S S +A   K ++GAL  +   R SN+ +A++ +   G++    +  
Sbjct: 119 CAGVNAIVIPLVNSVSVNADAIKISAGALMSLSVCRESNIMNAVKFLKLCGYKVYAATEK 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +     +       A+++G+E KG+ P        +  +   G I +LNVS A AV LY 
Sbjct: 179 ATTLYTKTDYTYPTAIVIGSEDKGISPAVLYLCDKLVKIPTLGNITSLNVSAATAVLLYE 238

Query: 276 TQNHF 280
                
Sbjct: 239 VLRQR 243


>gi|262037386|ref|ZP_06010850.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
           goodfellowii F0264]
 gi|261748548|gb|EEY35923.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia
           goodfellowii F0264]
          Length = 244

 Score =  217 bits (555), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 109/232 (46%), Gaps = 17/232 (7%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G++ V+  L +     KI      K    +   +        +     +T        
Sbjct: 16  IIGINPVTEVLKSDKNIEKIEVYKGIKKDTIKEILNLASKRNIKIFYTDRRT-------- 67

Query: 109 AVHQGLALETAPL-----LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              QG+    +       L+   + V  ++  ++++LD + DP N GAI+RSA  F  DG
Sbjct: 68  ENSQGVVALVSEFDYYLELTEFFEKVLAKDKSIVVILDQIQDPRNFGAIIRSAECFGVDG 127

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+   R +   +  + KS++GA+EH+  I+++N++D + K   +G++  G  +D +    
Sbjct: 128 IVIQDRNNVKVTETVVKSSTGAIEHVDIIKVTNISDTIDKFKKYGYKVYGAEADGENLYY 187

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +E    K+ L+LG+EG G+R K +E       +H+ G   +LNVS A  + L
Sbjct: 188 EESYPKKVCLVLGSEGNGMRKKVREHCDKTLKIHLKGQTNSLNVSVAGGIIL 239


>gi|253681735|ref|ZP_04862532.1| rRNA methylase [Clostridium botulinum D str. 1873]
 gi|253561447|gb|EES90899.1| rRNA methylase [Clostridium botulinum D str. 1873]
          Length = 260

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 108/259 (41%), Gaps = 10/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            +++   K ++  ++K ++ +Q     + G   V  AL +     + +L ++N+  + + 
Sbjct: 6   SKDNSLIKDIRKLSKK-KYRTQEGKFLVEGFRFVQEALKSTFEVPY-VLISENSNEKCES 63

Query: 83  --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                 +     V  V    + ++       QG+        +  ++        +++D 
Sbjct: 64  FNIYDLIQENTKVYLVRDDILKELCDTN-NPQGILAVV---NNKVMEIEDQKGFYVLVDR 119

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+RSA A    G+ITTK      +    +S  G++  IP I  +N    L+
Sbjct: 120 IQDPGNMGTIIRSANASGALGVITTKGTVDVYNDKTLRSTMGSIFKIPIIEDNNF-QILK 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + S GF+ +  S D++          K  + +G EG G+     E       + MPG  
Sbjct: 179 ILKSKGFKLVVSSLDTENNFYDIDLTGKSIICVGNEGNGVSDYIYELGDEKVKIPMPGDA 238

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN   AA++ +Y     
Sbjct: 239 ESLNAGVAASIMMYEVVRQ 257


>gi|307719542|ref|YP_003875074.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
 gi|306533267|gb|ADN02801.1| rRNA methylase [Spirochaeta thermophila DSM 6192]
          Length = 241

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 114/239 (47%), Gaps = 11/239 (4%)

Query: 48  NLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++++ G   V   L +P    ++  L  T     R             +    Q + + V
Sbjct: 3   SVYITGKRAVETYLVDPGVRERVVCLYVTDPHHHRHFLSLAREAGIRSEVCSAQELSRYV 62

Query: 106 GKEAVHQGLALET-APLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           G    H+G ALE        TLD +      + LL+ LDH+ DPHN+GAILRSA  F   
Sbjct: 63  GS---HRGFALEVLRTFKEATLDDLCERAEENALLVALDHLQDPHNVGAILRSADQFGAL 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R +  ++A ++KS+SGA   +P +  +NL  AL  +   GF   G   +  +P+
Sbjct: 120 GVILPERRAVKDAATISKSSSGADAFVPVVVETNLRRALLHVKEAGFWVYGADMEG-QPV 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   + ++ L+LGAEGKGL    +E    +  +   G + + NVS AA + +Y  +  
Sbjct: 179 HEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAIPARGHVDSFNVSVAAGILMYEVRRQ 237


>gi|260663516|ref|ZP_05864406.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552057|gb|EEX25110.1| rRNA methylase [Lactobacillus fermentum 28-3-CHN]
          Length = 259

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 118/274 (43%), Gaps = 20/274 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EK+ S+K++         +++KK+Q+     +   Q     L G H V+ AL    R + 
Sbjct: 3   EKLTSVKNARV-------KEWKKLQT----RKGRKQQGRYLLEGWHLVNEALQAD-RGLH 50

Query: 70  QLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           +L+ TK  LA   D  A       V +V P  +  +  +    QG+ +  A L      A
Sbjct: 51  ELIGTKEELAAHPDIVARFKE---VYSVTPAIMAAVT-ETVTPQGI-MVVADLPDLHQVA 105

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              S   + LD V +P N+G ++R+A A    G++     +   S  + +S  G+  H+ 
Sbjct: 106 TDLSGAWLFLDRVQNPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSMQGSQFHLA 165

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +L    + +   G+   G   + + K           AL++G EG+G+  +  + 
Sbjct: 166 LYE-GDLKKWFEDVKQAGYPVYGTQLNPAAKDFRIVTPQGGFALVMGNEGRGMSEELLKQ 224

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            T+  ++ M G  ++LNV+ +A + ++   +   
Sbjct: 225 TTANLYIPMRGQAESLNVAVSAGILMFELADALN 258


>gi|258614352|ref|ZP_05712122.1| RNA methyltransferase [Enterococcus faecium DO]
          Length = 254

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R    +Y                    L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +       QG+      
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +L D +  M   GF   G    +    L++  K +  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|253582715|ref|ZP_04859936.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251835585|gb|EES64125.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 235

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           + GV+ V   L N  + I +L +   N   +L+    L       +     +        
Sbjct: 4   IIGVNPVIEVLQNKEKNIEKLEMFKGNKDEKLNKIKKLASERNIKIFYTDKKI------- 56

Query: 108 EAVHQGLALETAPLLS-----PTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +           L+ +      ++++LD + DP N GA++RSA  F   
Sbjct: 57  -ENSQGVAVYISEYDYYVEFGEFLEKIAPMEKSIVLILDEIQDPRNFGALIRSAEVFGVK 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  +R +   +  + K+++GA+E++  ++++N+++AL K+    +   G   +  K  
Sbjct: 116 GIIIPERNAVRINETVVKTSTGAIEYVDIVKVTNISEALLKLKKLDYWVYGAEGEGSKDY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E    + AL+LG+EG G+R K +E    +  + M G I +LNVS A  + L
Sbjct: 176 SKEKYPSRTALVLGSEGNGIRKKVKENCDVLIKIPMHGKINSLNVSVAGGIIL 228


>gi|189485694|ref|YP_001956635.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287653|dbj|BAG14174.1| 23S rRNA methyltransferase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 251

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 13/248 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTV 96
           S++ S+     + G + V   L    R + +++ ++ A         +        + +V
Sbjct: 3   SKNNSRSSENVVCGRNPVLELLKAARRTVNKIMVSRTARGVVISEIINLAKQKGIALHSV 62

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAI 150
           PP+ +DK        QG+  E +P+    L  +          LL++LD + DPHN+GAI
Sbjct: 63  PPEKLDK---FSESSQGIVAEVSPVQYTELSDLIERSKKSLKPLLVILDGLEDPHNLGAI 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+ VAF  DG+I  K  +   +  ++KS++GA+EHI   R+ N   A+  +    F  +
Sbjct: 120 IRNCVAFGADGVIIPKWRAAGVNETVSKSSAGAVEHISISRVENTNQAIGLLKENSFWIV 179

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G + +  + LE+      +A+I+G+EG GL   T++ +  +  +    II +LN S A+A
Sbjct: 180 G-AENGGRILEKIDLPFPLAVIIGSEGFGLHSLTKKNSDFLISIPQENIISSLNASCASA 238

Query: 271 VALYITQN 278
           V LY    
Sbjct: 239 VILYEIAK 246


>gi|228471324|ref|ZP_04056127.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
           60-3]
 gi|228306901|gb|EEK16009.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas uenonis
           60-3]
          Length = 247

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 13/243 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           +   +YG+H ++ +L + S  I ++   K A      +          PV  VP + +++
Sbjct: 3   KQKLIYGIHALTESLASHS-DIDKIYMKKGAATGELLEIKRTARAQGIPVMEVPAERLNR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                  HQG+    +P+    L+++            +++LD V D  N GAI R+   
Sbjct: 62  FT--RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                I+  +R S S +A    +++GAL  IP  R  +L  A + +   G Q +G   D+
Sbjct: 120 AGVHAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       + +++G+E KG+     +  T    +   G I +LNVS A  + LY  
Sbjct: 180 TTNYTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEV 239

Query: 277 QNH 279
              
Sbjct: 240 VRQ 242


>gi|19704851|ref|NP_602346.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19712732|gb|AAL93645.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 234

 Score =  217 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     +        
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFYTGKKI------- 56

Query: 108 EAVHQGLALETAPL-LSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D        ++  L+++LD + DP N GAI+RSA  F  D
Sbjct: 57  -ENSQGVAVYISNYDYYKDFDEAYEELVGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEANISY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E  ++K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYSNKVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|315023474|gb|EFT36480.1| rRNA methylase [Riemerella anatipestifer RA-YM]
          Length = 264

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 106/259 (40%), Gaps = 11/259 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLP 88
           +KM+      +  +  +  F++G+  V  A+       K+F     + ++          
Sbjct: 5   QKMKQDYTSHKKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYAELKALLAK 64

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHV 141
           H      VP + +++   K   HQG+    + +   +++AV         +  L++LD +
Sbjct: 65  HKIRPNYVPIEKLNRFTRK--NHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N GAI R+A     D II  ++ +   ++   K+++GAL ++   +  NL   +  
Sbjct: 123 TDVRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDF 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G      +  ++K +         AL++G E KG+  +    +     L + G  +
Sbjct: 183 LQQSGVSVFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQ 242

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNVS A    LY      
Sbjct: 243 SLNVSVACGAILYEVVRQR 261


>gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 270

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 117/285 (41%), Gaps = 26/285 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  IS +++E I  +K  +  K R   R +                    + G+  V  A
Sbjct: 6   VEFISSRENECIKRVKKLNDKKYREEFRSF-------------------IIEGLKLVKEA 46

Query: 61  LNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGL 114
           +N     I  ++ ++ A  R          L     +K V   P  + + +   +  QG+
Sbjct: 47  INYQIECINLVIFSQQAKDRYQEFYWECKRLLEDGKIKRVIEVPDKLFEYIATTSTPQGI 106

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             E    +   ++ ++N + ++V D + DP N+G ++R A AF  D ++TTK      + 
Sbjct: 107 LAECN-FVDKDINFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVTTKGTVDIYNP 165

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              ++  G+L H+  +R +     ++ +    F     +      + + + + K  +++G
Sbjct: 166 KTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKVVPDKKFCVVIG 225

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E +G+     + A     + M G  ++LN + AA++ LY  +  
Sbjct: 226 NESEGVSDSFAKVAARKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|256397252|ref|YP_003118816.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
           acidiphila DSM 44928]
 gi|256363478|gb|ACU76975.1| RNA methyltransferase, TrmH family, group 3 [Catenulispora
           acidiphila DSM 44928]
          Length = 339

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 112/254 (44%), Gaps = 12/254 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTV 96
            R   + E   + G ++V  AL    P++ ++       +   R           P+   
Sbjct: 84  RRTPGKGEAEQVAGRNSVVEALRAHVPAKALYIAQYIDSDDRVRESMRLATELGVPLLEA 143

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGA 149
           P   +D++     +HQG+ L   P      D +        ++ L   LD V DP N+GA
Sbjct: 144 PRHELDRMT-NGTLHQGVMLVMPPYEYAHPDDLLEEVFAAGDTPLFAALDGVTDPRNLGA 202

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++RS  AF   G+I  +R +   +A   K+A+GA   +P  R  NLT AL+     G   
Sbjct: 203 VMRSVAAFGGHGVIVPERRAAGMTAGAWKAAAGAGARLPVARAGNLTRALEAYKKQGVMV 262

Query: 210 IGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            GL++D   PL + EI  + + L++G+EGKG+     E       + +    ++LN   A
Sbjct: 263 AGLAADGSVPLHELEIATEPLCLVIGSEGKGMSRLVSELCDVTVSIPIASTTESLNAGVA 322

Query: 269 AAVALYITQNHFAK 282
           A +ALY      A+
Sbjct: 323 AGIALYEVNRRRAE 336


>gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
           15579]
 gi|187775605|gb|EDU39407.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
           15579]
          Length = 259

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 114/262 (43%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR 80
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   +   N L +
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEK 61

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L    N+ +      V    +  I   E   QG+        +  LD    +   +++D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSISNTE-NPQGIVSVINYFKTEKLDL--ENGFYILVDK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    GIITTK      +    +S  G++ +IP I   NL + ++
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDVYNEKTLRSTMGSIFYIPIIEDENL-ETVK 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF+ +  S D+          D + + +G EG G+       +     + MPG  
Sbjct: 178 SLQRNGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEDLNSLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|299143771|ref|ZP_07036851.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518256|gb|EFI41995.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 226

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 112/218 (51%), Gaps = 5/218 (2%)

Query: 59  AALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             L N  + K++  +       +  +         +  +  + +D++  + A HQG+   
Sbjct: 1   EILKNKKADKLYVQMGNFEGSMKKIYAMAKEQNILITELNKKKLDEL-SEGANHQGVVAL 59

Query: 118 TAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            +     TL+ +  + +  +++LD + DPHN+GAI RSA AF   GII  K  S   + V
Sbjct: 60  VSGYEYSTLEDLILNGINQILILDKIEDPHNLGAIARSAEAFGFKGIIIPKHKSVYVNDV 119

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + K+++GA++++  +  +NL+++++K+   G+   G   + ++   +     KI L++G 
Sbjct: 120 VYKTSAGAIDNVSVVIETNLSNSIEKLKENGYWIFGADMEGEE-YFKSDLKGKIVLVVGN 178

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           EGKGL P  ++    +  + M G I +LN S AA++ +
Sbjct: 179 EGKGLSPAVRKHCDKIISIPMAGKINSLNASCAASILM 216


>gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 356

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 76/279 (27%), Positives = 120/279 (43%), Gaps = 11/279 (3%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PS 65
           + E+         A  R    D        +  R   Q E+  + G ++V  AL    P+
Sbjct: 68  RDERAERSPAPRSAAPRARATDRPAGADAPRARRAKQQDESEVVTGRNSVVEALRAKIPA 127

Query: 66  RKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
             ++     + +   +           PV  V    +D+I G +AVHQGLAL+  P    
Sbjct: 128 TALYIASRIEYDDRVKEVLSLATGRGIPVLEVMRPELDRIAGHDAVHQGLALKVPPYEYA 187

Query: 125 TLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               + +         LL+ LD + DP N+GAI+RS  AF   G+I  +R S   +A   
Sbjct: 188 DAIELLDKTISRGQLPLLVALDGITDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAW 247

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAE 236
           K+++GA    P    SNLT  L+ +   G   +GL       L +    D  I +++G+E
Sbjct: 248 KTSAGAAARTPVAMASNLTQTLKALKQRGVFVVGLDGGGDMSLHEFTLADRPIVVVVGSE 307

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           GKGL     ET  ++  + +    ++LN   AA+V LY 
Sbjct: 308 GKGLSRLVTETCDTVVSIPIGASTESLNAGIAASVTLYE 346


>gi|237742621|ref|ZP_04573102.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229430269|gb|EEO40481.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 234

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 111/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID     
Sbjct: 4   IIGINPVTEALLNKEKNIEKLEFYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A ++  L+++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGVAVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E   +K+  +LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYPNKVVFVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|55820344|ref|YP_138786.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|116627180|ref|YP_819799.1| rRNA methyltransferase [Streptococcus thermophilus LMD-9]
 gi|55736329|gb|AAV59971.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|116100457|gb|ABJ65603.1| rRNA methylase [Streptococcus thermophilus LMD-9]
 gi|312277659|gb|ADQ62316.1| RRNA methyltransferase [Streptococcus thermophilus ND03]
          Length = 245

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + +      L+R HR                   +  + G H    A
Sbjct: 1   MEVIQSKQNASIKTARKL----LQRKHR-----------------KTSYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I Q+   +    R      + +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGAHILQIFVLEEMADR------VANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D++    LL  L+ V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QTQALPDSLSGKYLL--LEDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R   + + ++         +  +        + +K     AL++G EG+G
Sbjct: 150 QGSHFHLPIYRGP-ILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 209 ISKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243


>gi|312864040|ref|ZP_07724276.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
           F0396]
 gi|311100453|gb|EFQ58660.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
           F0396]
          Length = 245

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + K      L+R HR                   +  + G H    A
Sbjct: 1   MEVIQSKQNASIKTAKKL----LQRKHR-----------------KTSYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I Q+   +    R      + +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KVSGAHILQIFVLEEMADR------VANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D++    LL  L+ V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QTQALPDSLSGKYLL--LEDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R   + + ++         +  +        + +K     AL++G EG+G
Sbjct: 150 QGSHFHLPIYRGP-ILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 209 ISKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243


>gi|260891370|ref|ZP_05902633.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
           F0254]
 gi|260858753|gb|EEX73253.1| RNA methyltransferase, TrmH family, group 3 [Leptotrichia hofstadii
           F0254]
          Length = 233

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 17/232 (7%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G++ V   L +     K+      K    +   +        +     +T        
Sbjct: 4   IIGINPVIEVLKSDKNIEKLEVYKKIKKETIKEILNLASRRNIKIFYTDRRT-------- 55

Query: 109 AVHQGLALETAPLLS-----PTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              QG+    +           L+ +  +   +++VLD V DP N GAI+RSA  F  DG
Sbjct: 56  ENSQGVVALVSEFDYYVDFSAFLEKLLKKEKSIVVVLDQVQDPRNFGAIIRSAECFGVDG 115

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II   R S   +  + KS++GA+EH+  ++++N++D + K+  +G+   G  +D +    
Sbjct: 116 IIIQDRNSVKVTETVVKSSTGAIEHVDIVKVTNISDTIDKLKKYGYAVYGAEADGQNYYY 175

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +E   +K  L+LG+EG G+R K +E    +  +H+ G I +LNVS A  + L
Sbjct: 176 EENYPEKACLVLGSEGNGMRKKVKEHCDKIVKIHLKGQINSLNVSVAGGIIL 227


>gi|290893297|ref|ZP_06556283.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|290557105|gb|EFD90633.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
          Length = 252

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 124/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +       +W   L   + V  +  + I  ++ +    QG+    A    P +  +
Sbjct: 50  ELLVSSGVSVPEEW---LKGDYDVFEISTE-ISHLISETMTEQGVFAVVA-TSEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D ++  K  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ ++L D +  +   G   IG   D   K L    K D +AL++G EG G+ P+ Q+  
Sbjct: 164 IQ-ADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYITIYGDSESLNVAVAAGILLYGLRK 252


>gi|332800099|ref|YP_004461598.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332697834|gb|AEE92291.1| RNA methyltransferase, TrmH family, group 3 [Tepidanaerobacter sp.
           Re1]
          Length = 250

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G ++V  AL    R I ++   K     L R   +       P+  +       +  K
Sbjct: 6   IEGRNSVWEALQ-AGRPINKIYIKKGEYHGLIRDIIEKARNTGVPISEIDEAAFLSMA-K 63

Query: 108 EAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            A HQG+  + A     +++        +     +++L+ + DP N+G+I+R+A      
Sbjct: 64  TAGHQGILAKVASKDYYSVEDILKTARDLDEDPFILILNELTDPQNLGSIIRTADGMGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  +   +  +AK +SGA+E++   R++N+   + ++   G   IG  ++ K   
Sbjct: 124 GIIIPKNRACGITPTVAKISSGAVEYVKVARVTNIARTIDELKKEGLWIIGADAEGKN-Y 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +      IAL++G E KGL    ++    +  + + G I +LN + AA++  Y      
Sbjct: 183 FEVDLTGSIALVIGGEDKGLGKLVKQKCDILVRIPLRGRITSLNAAVAASILGYDILRQR 242


>gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
 gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
          Length = 340

 Score =  217 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 8/202 (3%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137
                   V+ V    + ++ G  +VHQG+AL+TA   +  L+A+           LL+ 
Sbjct: 13  EAKASGVLVEEVTWARLAQVTG-GSVHQGIALQTAAADTLDLNALIDGCSELGEPPLLLA 71

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DPHN+GA++RSA A    G++  +R S   +   AK A+GA+EH+P  R+ NL  
Sbjct: 72  LDGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARVVNLNR 131

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           +L+K+   G++ IGL+++    L     +  + L+ G+E +GL   T+     +  + + 
Sbjct: 132 SLEKLKDSGYRVIGLAAEGDVTLMDVDLDGPLVLVTGSEDQGLSLLTRRHCDQLVRIPLR 191

Query: 258 GIIKALNVSNAAAVALYITQNH 279
           GI  +LN S A A+ +Y     
Sbjct: 192 GITPSLNASVATAMCVYEVARR 213


>gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
 gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
          Length = 335

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           + Q +     +      A       +   P   +D++      HQGL L+  P      +
Sbjct: 115 VQQFIDNDERVREALQLAAERGGINLMEAPRPELDRMT-NGLNHQGLVLQVPPYEYAHPE 173

Query: 128 AVR-------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +           L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K++
Sbjct: 174 DLADAAADAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTS 233

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKG 239
           +G     P  R +NLT AL++    G   +GL++D +  L + +     + +++G+EGKG
Sbjct: 234 AGTAARTPVARATNLTRALEQYQKAGLTVVGLAADGEAELGDLDALEGPVVIVVGSEGKG 293

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           L     ET      + MPG  ++LN   AA + LY       
Sbjct: 294 LSRLVGETCDVRVRIPMPGGAESLNAGVAAGIVLYEAARRRG 335


>gi|16800250|ref|NP_470518.1| hypothetical protein lin1181 [Listeria innocua Clip11262]
 gi|16413640|emb|CAC96412.1| lin1181 [Listeria innocua Clip11262]
 gi|313619318|gb|EFR91052.1| rRNA methyltransferase [Listeria innocua FSL S4-378]
          Length = 252

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 123/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +       +W   L   + V  +  + I  ++      QG+    A +  P +  +
Sbjct: 50  ELLISSGVSVPEEW---LKGDYDVFEISSE-ISHLISDTMTEQGVFAVVA-ISEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D ++  +  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ ++L + +  +   G   IG   D   K L    K + +AL++G EG G+  + Q+  
Sbjct: 164 IQ-ADLFEWVANLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISEELQDRL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|260495230|ref|ZP_05815358.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197287|gb|EEW94806.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 234

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID     
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D        +   L+++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGVAVYISNYDYYKDFDEAYEELVGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEANINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E   DK+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYPDKVVLVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
           700633]
 gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
           700633]
          Length = 252

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 111/251 (44%), Gaps = 13/251 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++Y+K+Q+    S+   + E   + G H V  A+ +    I +L+ +++ +    +    
Sbjct: 13  KNYQKLQT----SKGRKKSEAYMIEGEHLVEEAIQSNI-SIQRLVVSEDTIQ---FYEKW 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              +P   V  +  +K+   +   QG+     PL    L  V   + L+  D V DP N+
Sbjct: 65  TKSYPTMFVSKEVFEKLSMTQTN-QGILAIV-PLEKKPLVEVPQGRYLLA-DAVQDPGNL 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A A   D ++  +      +  + +S  G+  H+      NL D   K+     
Sbjct: 122 GTIIRTADAAGFDAVVLGEGCVDLYNDKVVRSMQGSQFHVAI-YHENLMDVYGKLKENDI 180

Query: 208 QTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                +     K  +     D +A+++G EG G+R +  E+A  +  + M G  ++LNV+
Sbjct: 181 PIAVTALHRDAKDFKWLTGRDSVAIVVGNEGNGVRDELIESADFIIQIPMFGQAESLNVA 240

Query: 267 NAAAVALYITQ 277
            A  V +Y T+
Sbjct: 241 IATGVLMYQTR 251


>gi|268319892|ref|YP_003293548.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|262398267|emb|CAX67281.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
          Length = 253

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 114/257 (44%), Gaps = 12/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL N    ++ +L T  AL +LD   
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-VLGTAEALKKLDASY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     ++      I + +      Q + +   P+  P   +    +  +VLD++ DP 
Sbjct: 66  KLKDDKVIQITD--AISQHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  I+   + +A+      
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNP-ILEAISSFKEN 180

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G        D + K L       ++AL++G E  G   +  ETA    ++ + G  ++LN
Sbjct: 181 GLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLN 240

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 241 AAVAAGIMIY----HFS 253


>gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
           255-15]
 gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
           255-15]
          Length = 251

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 118/281 (41%), Gaps = 33/281 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+E +               + +KK+ +     +   Q +   + G H V  A
Sbjct: 1   MKHISSPKNEIV---------------KQWKKLLT----KKGRLQTKRFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I +L+  ++      W  N      +     +++ K++ +    QG+      
Sbjct: 42  VRAG--IIKELIVREDVQVPGSWKKNAADLITI----DESVAKVLSETETTQGIFAVCEM 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                          ++LD + DP N+G ++R+A A   DG+I         ++ + ++ 
Sbjct: 96  KQQT---ERLERGRYLLLDRLQDPGNVGTMIRTADAAGFDGVIIGHGTVDVYNSKVLRAT 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P I + +L +A+Q +H  G   +G +    +P         I LI+G E +G+
Sbjct: 153 QGSIFHLPVIMM-SLEEAIQDLHELGVFILGTALRGAQPYTDVENLGAIGLIIGNEAQGV 211

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            P+  +     A++ + G  ++LN + AA + LY    HFA
Sbjct: 212 APELLDQCDGRAYIPIRGKAESLNAAVAAGILLY----HFA 248


>gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5]
 gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5]
          Length = 248

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 120/268 (44%), Gaps = 22/268 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K+          +D+KK+ +  ++++         + G H V  AL +P   + 
Sbjct: 2   KQIESAKNQKV-------KDWKKLHTKKERTK----TNTFLIEGEHLVEEALKSPG-IVK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           ++L            ++L        +       +   E   Q  A+   P      + +
Sbjct: 50  EILVKDET----KIPSDLETGIQCYMLSEDAFSAVTETETPQQIAAVCHMPE-----EKL 100

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             ++ ++++D V DP N+G ++R+A A   D ++     + + +    +SA G+  HIP 
Sbjct: 101 ATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPV 160

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +R  NL   + ++ + G +  G +  +  P ++  +++  ALI+G EG G+     E   
Sbjct: 161 VR-RNLPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTD 219

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 220 LNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|110636730|ref|YP_676937.1| TrmH family tRNA methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110279411|gb|ABG57597.1| tRNA/rRNA methyltransferase, TrmH family [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 268

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 13/265 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWD 84
           R+Y K +  +    +    +   ++G+  V  AL      I ++L  +N   A+ +  ++
Sbjct: 3   RNYPKKRFSSSYDENKPANDKDMIFGIRPVIEALEAGKE-IDKILIQRNIEQAVVQELFE 61

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMV 137
                  PV  VP + +D++  K   HQG+    + +   +LD +         + LL++
Sbjct: 62  LANRVKVPVIKVPVEKLDRVTRK--NHQGVICYLSAINFASLDNIVSACFESGKNPLLVM 119

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V D  N GA+ RSA     D +I   R +   ++   K+++GAL HIP  R+ +L D
Sbjct: 120 LDRVTDVRNFGAVARSAECLGVDAMIVPSRGAAQLNSDAVKTSAGALYHIPVCRVDHLID 179

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            ++ +   G + I  S  +   +  E   D   +++G+E  G+       A +   + M 
Sbjct: 180 TVKYLKQCGLRIIACSEKASINVYDEDLTDPCVILMGSEEDGISMDLLRYADAHVTIPMS 239

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G I +LNVS A  + L        K
Sbjct: 240 GHINSLNVSVATGMILSEVTRQRLK 264


>gi|166030706|ref|ZP_02233535.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
           27755]
 gi|166029498|gb|EDR48255.1| hypothetical protein DORFOR_00380 [Dorea formicigenerans ATCC
           27755]
          Length = 264

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 106/263 (40%), Gaps = 13/263 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++ +  +K +   +     + G+         P  ++ ++ A++    R     
Sbjct: 6   SNAKVKRLVNLKKKKKLRDEEGVFLVEGIRMFREV---PKDRLVEVYASEEFWNR--ERK 60

Query: 86  NLPHPFPVKTVPPQTID----KIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMV 137
            +        V P+ +     + V      QG+            + V+       LL+V
Sbjct: 61  AVEQVLAGTKVQPEILADFVFEYVSDTKTPQGILCLVRQKQYSITEIVKEKGGELPLLLV 120

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+G I+R+A      GI+ ++      +  + +S  GA   +P+  + +L +
Sbjct: 121 LDQIQDPGNLGTIVRTAEGAGVTGIVMSQDCVDMYNPKVVRSTMGAAYRVPFCYVDDLAE 180

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +++M   G  T     + K   ++E      A ++G EG GLR +  + A     + M 
Sbjct: 181 EVKQMKEAGICTYAAHLEGKNSYDEEDYRKASAFLIGNEGNGLRDEVADQAQVYIRIPMK 240

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G +++LN + A A+  +      
Sbjct: 241 GQVESLNAAVATAILTFEAARQR 263


>gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54]
 gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila
           LSv54]
          Length = 295

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 15/277 (5%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
            +     RR+++   + +    + R     E+  ++G+H +  AL     +I +++A K+
Sbjct: 16  KADRGAPRRDNKSAGQDKKAATQDRRIRFSED-LIWGIHPIVEALKYEPNRISEIIAQKD 74

Query: 77  AL-ARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALET--------APLLSPT 125
              A+ D    L     VK   +   ++       A HQG+  +         A  L   
Sbjct: 75  RRGAKFDEIVELARAAKVKVTFIDSISLQGDGAASARHQGVIAKVTQADLMDFADFLQKF 134

Query: 126 LDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            DAV       ++V D + DPHN+GAI+RSA+A    G++ T+  S       AKS++GA
Sbjct: 135 KDAVDRGEKPRIIVCDSLQDPHNLGAIVRSALASGAIGVLLTRERSAPLGGTAAKSSAGA 194

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRP 242
           + H+   +++NL  +L ++   G    G   D+    L     N    +++G+EG G+RP
Sbjct: 195 ISHMDICQVTNLVKSLAELKKVGAWVFGAIKDADAVSLFDADLNVPACIVVGSEGTGIRP 254

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +        + M G + +LN S AAAV L+     
Sbjct: 255 LVRRECDIQLSIPMVGELDSLNSSVAAAVILFEAMRQ 291


>gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81637729|sp|P94538|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA
 gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis]
 gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 119/268 (44%), Gaps = 22/268 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K+          +D+KK+ +  ++++         + G H V  AL +P   + 
Sbjct: 2   KQIESAKNQKV-------KDWKKLHTKKERTK----TNTFLIEGEHLVEEALKSPG-IVK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           ++L         D    L        +       +   E   Q  A+   P      + +
Sbjct: 50  EILVKDETRIPSD----LETGIQCYMLSEDAFSAVTETETPQQIAAVCHMPE-----EKL 100

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             ++ ++++D V DP N+G ++R+A A   D ++     + + +    +SA G+  HIP 
Sbjct: 101 ATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIPV 160

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +R  NL   + ++ + G +  G +  +  P ++  +++  ALI+G EG G+     E   
Sbjct: 161 VR-RNLPSYVDELKAEGVKVYGTALQNGAPYQEIPQSESFALIVGNEGAGVDAALLEKTD 219

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 220 LNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
 gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
          Length = 254

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R    +Y                    L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +       QG+      
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +L + +  M   GF   G    +    L++  K +  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|226950562|ref|YP_002805653.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
           Kyoto]
 gi|226840837|gb|ACO83503.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
           Kyoto]
          Length = 259

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 115/262 (43%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD    +   +++D 
Sbjct: 62  LYKKYNINNDIETYVVNYFVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    GIITTK      +    +S  G++ +IP I   NL + ++
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF+ +  S D+          D + + +G EG G+    +  +     + MPG  
Sbjct: 178 SLRKKGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEVLKTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|313624066|gb|EFR94149.1| rRNA methyltransferase [Listeria innocua FSL J1-023]
          Length = 252

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 123/270 (45%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+K+          + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2   EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +LL +       +W   L   + V  +  + I  ++      QG+    A +  P +  +
Sbjct: 50  ELLVSSGVSVPEEW---LKGDYDVFEISSE-ISHLISDTMTEQGVFAVVA-ISEPDMMLL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              +LL+V D V DP N+G ++R+A A   D ++  +  +   +  + +S  G+  HIP 
Sbjct: 105 YGKKLLLV-DAVQDPGNVGTLIRTADAAGYDCVVLGRGSADLYNPKVIRSTQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ ++L + +  +   G   IG   D   K L    K + +AL++G EG G+  + Q+  
Sbjct: 164 IQ-ADLFEWVGNLEEEGVPVIGAVLDDQAKSLNDMPKRETLALMVGNEGNGISEELQDRL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 223 SEKVYIPIYGDSESLNVAVAAGILLYGLRK 252


>gi|332798670|ref|YP_004460169.1| tRNA/rRNA methyltransferase SpoU [Tepidanaerobacter sp. Re1]
 gi|332696405|gb|AEE90862.1| tRNA/rRNA methyltransferase (SpoU) [Tepidanaerobacter sp. Re1]
          Length = 271

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 110/260 (42%), Gaps = 4/260 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           + +  K ++   +  +   +     + G+  V+ ++ +     F +++     + + +  
Sbjct: 6   SKKQQKLVKDLIKSKKARMKNRCFIVEGLKNVAESIKSNYEVRFVVISDDFFKSNIGFIK 65

Query: 86  NLPHPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L        +  V     +++       QG+        +   D  + + L++ LD + 
Sbjct: 66  ILSKQVCPNRLYQVRDNLFNELTDT-VTPQGIMAVINFKDTNIEDVQKENFLMIALDRIQ 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A   D I+  ++     +  + +SA G+L H+P I+  +L   L ++
Sbjct: 125 DPGNMGTIIRTADAAGADAIVIGQKCVDIYNPKVVRSAMGSLFHVPIIQTDDLIKTLIEL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G + +     +KKP           +++G+E +G+  +    +  +  + MPG  ++
Sbjct: 185 KEKGGKVVTTHLKAKKPYYDVNYMACTIIVMGSEDEGVSKEIVRISDELVKIPMPGSAES 244

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ A  + ++       K
Sbjct: 245 LNVAIAHGIMVFEAVKQRIK 264


>gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13]
          Length = 252

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 7/236 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
              Q     + G H V  AL      + +++ +++     +WD N  H   +  VP   +
Sbjct: 23  EREQSGTFIIEGFHLVEEALKVD-NLVEEIIISEDRSIPSEWDLN--HVELIYAVP-NVL 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +I   E   QG+A      +   L  ++ +Q +++LD+V DP N+G ++R+A A   D 
Sbjct: 79  KEISETE-TPQGVAAICRIPVQHDL-TLQPNQKILLLDNVQDPGNVGTMIRTADAAGMDM 136

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +  +   S+ + +S  G++ H+P  R  +L   +++         G S  +  P +
Sbjct: 137 VILGEGCADLYSSKVIRSTQGSIFHLPIAR-GDLKTYIKQCKELQTPVYGTSLQNGVPFQ 195

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +   ++  ALILG EGKG+  +  E      ++ + G  ++LNV  AA + +Y  +
Sbjct: 196 EVQSSNTFALILGNEGKGMAQEHLEMTDQNLYIPIHGQSESLNVGVAAGILMYYLR 251


>gi|256826826|ref|YP_003150785.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
 gi|256582969|gb|ACU94103.1| rRNA methylase, putative, group 3 [Cryptobacterium curtum DSM
           15641]
          Length = 300

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 25/257 (9%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIV 105
            F+ G H V  AL+         LA  N   RL  D           ++TVP   +DK  
Sbjct: 3   EFIEGKHPVWEALSTHVPITRIFLADGNKHDRLLQDILHMAARQHIVMETVPRAQLDKR- 61

Query: 106 GKEAVHQGLALETAPLLSPTLDAV--RNSQ-----------------LLMVLDHVNDPHN 146
            K   HQG+  +  P    +LD +  R +                  L++VLDH+ D  N
Sbjct: 62  SKRGSHQGIMAQAQPFAYASLDDIIARGNDQAVSLAVSHSSSAAPCALIIVLDHITDAGN 121

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RSA +    GII   + S   +A   KS++GA+ HIP  +++NL  AL ++ + G
Sbjct: 122 LGAIARSAESVGAAGIIIPNKRSAYVTASTYKSSAGAISHIPVAQVANLQQALARLKNEG 181

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +   G S  ++  +        + L++G E  GL   TQE       L   G++ +LNV+
Sbjct: 182 YWVAGASEKAEGGIWDANLTGNVCLVMGNENTGLARLTQEACDFFVSLPQRGVVSSLNVA 241

Query: 267 NAAAVALYI--TQNHFA 281
            +A V +Y    QN  +
Sbjct: 242 QSATVCMYEWLRQNRLS 258


>gi|258545032|ref|ZP_05705266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
           hominis ATCC 15826]
 gi|258519730|gb|EEV88589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Cardiobacterium
           hominis ATCC 15826]
          Length = 243

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 10/235 (4%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G+HTV   L +    + +L    N  ++              PV+TV    I+ ++    
Sbjct: 9   GIHTVQQLLADGH--VLRLYVADNKKSKNLTALVGEAQARGVPVETVALYEIEMML-PGV 65

Query: 110 VHQGLAL--ETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            HQG+A   E     +   DA+      LL+VLD + DPHN+GA LRSA A     ++  
Sbjct: 66  RHQGVAAVSEARGQAADWADAIAGVEKPLLLVLDSIQDPHNLGACLRSAAAAGVHAVLIP 125

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
              +   + V+ K A GA E +P  R+SNL   +++M   G   +G +  + + L     
Sbjct: 126 NSRAADVTPVVEKVACGATEILPLFRVSNLRREVERMQRQGIWVVGGAGGAAQSLYATDL 185

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +A+I+G EG+G+R   +E    +  + M   +++LNVS A  V L+  +   
Sbjct: 186 TVPLAVIVGNEGEGIRHGLREQCDFLVQIPMAEGMESLNVSVACGVMLFEARRQR 240


>gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
           aerosaccus SK60]
 gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
           aerosaccus SK60]
          Length = 258

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 116/251 (46%), Gaps = 21/251 (8%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVG 106
           YG+H V + L +       L             AN+      +   ++      + K+  
Sbjct: 8   YGIHAVQSILQHRGIDGLTLFIQDGKKQDDATVANITELAQTYGIAIQISAKDKLTKLA- 66

Query: 107 KEAVHQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   HQG+ L+  P           L       R   LL+VLD + DP+N+GA LR+AVA
Sbjct: 67  ESPQHQGVVLQARPAELQDEADLKYLVDKHQTERKPLLLLVLDQITDPNNLGACLRTAVA 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-D 215
                +I  K +S S +  +AK A GA+E +P+I+++NL   L  +   G    G +  D
Sbjct: 127 MGVSAVIIPKNHSSSITPAVAKVAVGAVELMPFIQVTNLARTLTDIKKQGVFVFGTALDD 186

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAV 271
           + KP++       +A+++G+EG G+R  T +T   + ++ MP    G I++LNVS A  +
Sbjct: 187 TAKPVQDCDLTGDVAIVMGSEGDGIRRLTADTCDQLVYIPMPGNEHGQIQSLNVSVATGM 246

Query: 272 ALYITQNHFAK 282
            LY       K
Sbjct: 247 VLYEASRQRFK 257


>gi|225569865|ref|ZP_03778890.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
           15053]
 gi|225161335|gb|EEG73954.1| hypothetical protein CLOHYLEM_05959 [Clostridium hylemonae DSM
           15053]
          Length = 263

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 6/259 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDA 85
           ++  K++ +  +K +   + +   + G+         P+ ++ +   +++   R     +
Sbjct: 7   NQKVKRLVNLRKKRKARDEEKVFLVEGIRMFREV---PAERLLEAYVSESFYKREGGTVS 63

Query: 86  NLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVND 143
            +     V+  +   T+   V      QG+            +A       ++VLD++ D
Sbjct: 64  RVLEGCAVRPEILSDTVYDYVSDTKTPQGVLCVVRQKEYTFAEAAGGERAHILVLDNLQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A      GI+ +       +    +S  G++  +P  R  +LT+A+++M 
Sbjct: 124 PGNMGTVIRTAEGAGVTGIVMSSECVDVYNPKTIRSTMGSVYRMPLYRAKDLTEAVRRMK 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G  T     D     ++       A  +G EG GLR +    A +   + M G +++L
Sbjct: 184 ESGIHTYAAHLDGVLSYDEADLTKPCAFFIGNEGSGLREEVAALADTYIRIPMEGEVESL 243

Query: 264 NVSNAAAVALYITQNHFAK 282
           N + AAAV ++       +
Sbjct: 244 NAATAAAVLMFEAARQRRQ 262


>gi|116751047|ref|YP_847734.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116700111|gb|ABK19299.1| RNA methyltransferase, TrmH family, group 3 [Syntrophobacter
           fumaroxidans MPOB]
          Length = 252

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 116/248 (46%), Gaps = 7/248 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVP 97
           +  H+S P +L++ G + V   L     ++ +++  + +   R   +         +   
Sbjct: 2   RKTHSSTPPHLWVSGFNPVREVLLTGRVEVLEMIVARSDQRVRELVELGALRGIAPRQET 61

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILR 152
              +  +VG  A HQG+AL         L+A+          L++LD + DP N+GA+LR
Sbjct: 62  RDGLSALVG-HAHHQGVALRMREFPYAALEALLEKPTGEREPLVILDCLQDPQNLGAMLR 120

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA      G+I  +  S   ++ + + A+GA  ++P I+++NL  AL+++   G    GL
Sbjct: 121 SACFLGARGVIVPRDRSARVTSTVIRIAAGATAYLPVIQVNNLVRALEQLKECGLWIFGL 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            + + + +        + L++G E KGLRP       +M  +   G +++LN + + A+A
Sbjct: 181 DAQAAQTIYDADLTVPLGLVVGNEQKGLRPLVARACDAMVRIPEHGPLQSLNAATSGAIA 240

Query: 273 LYITQNHF 280
           L   Q   
Sbjct: 241 LAEVQRRR 248


>gi|284162537|ref|YP_003401160.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           profundus DSM 5631]
 gi|284012534|gb|ADB58487.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           profundus DSM 5631]
          Length = 232

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 15/234 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           G++ V  AL +   K+ ++   K+A   R+     L     +  V    + K        
Sbjct: 5   GINGVMEALKSG--KVNKIFVLKDATNPRIKEIVALAKKKKIPVVYTPQLPKEA------ 56

Query: 112 QGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +G+  E +P+    +D +     R    ++ LD V DP N+GAI+RSA  F C G++  K
Sbjct: 57  RGVMAEISPIEYKEVDTIIDKCIREGSFILFLDSVEDPQNMGAIMRSAEFFGCAGVVIPK 116

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R     +  +AK ++GA+ H+   R+ NL + L+K+  +G   +G   D + PL     +
Sbjct: 117 RRCVQVNETVAKVSAGAVFHLDIARVENLANILKKLKKFGITVVGADLDGE-PLRNVDLS 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +A+++G E KGL    ++    +A +   G I +LN+S A A+ +Y  +   
Sbjct: 176 PPLAIVVGGEDKGLSKPVKKQCDFIAKIEGYGKINSLNLSVAGAIIMYEFRRRL 229


>gi|297572188|ref|YP_003697962.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 327

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 27/288 (9%)

Query: 18  SHYAKLRRNHRDYKKM----------QSFNQKSRHTSQPENLFLYGVHTVSAALNN--PS 65
           +  A+ R  H  YKK                +    +      + G + V   + +  P 
Sbjct: 37  TPKAEERTYHPAYKKKVAREAAAVKAAGPKLRGHLHTPEGYELVSGRNPVVEIVASGIPF 96

Query: 66  RKIFQL--LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
            ++F +  LA    +A +   A       +  V    +DK+   + VHQG+ALE  P   
Sbjct: 97  SRVFVVGSLANDERVATVLR-AATESGAELIEVTRFELDKMTDGQ-VHQGIALEIPPYEY 154

Query: 124 PTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             ++ +           L++ LD V DPHN+GA +RSA AF  DG++  +R S   +A +
Sbjct: 155 VDVEELVALGHDHLEPGLIVALDSVTDPHNLGAAMRSASAFRADGVLIPERRSAGVNATV 214

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGA 235
            K ++GA   +P  R +NL  AL+ + + G+  +GL       ++     D  + ++ G+
Sbjct: 215 WKVSAGAAARVPVARETNLVRALEDLKAQGYFVVGLDGGGDATVDTLDMADVPLVIVTGS 274

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT---QNHF 280
           EGKGL    ++T   +A + +   +++LN + A  +ALY     + +F
Sbjct: 275 EGKGLSRLVRDTCDVIASIPIASDMESLNAAVATGIALYQIDVKRRNF 322


>gi|168181825|ref|ZP_02616489.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
 gi|237796588|ref|YP_002864140.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
           657]
 gi|182675129|gb|EDT87090.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
 gi|229263217|gb|ACQ54250.1| RNA methyltransferase, TrmH family [Clostridium botulinum Ba4 str.
           657]
          Length = 259

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 114/262 (43%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD    +   +++D 
Sbjct: 62  LYKKYNINNDIETYVVSYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL + ++
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF+ +  S D+          D + + +G EG G+       +     + MPG  
Sbjct: 178 SLQKKGFKLLVSSLDTNSNFYDVNMKDDMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599]
 gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599]
          Length = 271

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 118/278 (42%), Gaps = 20/278 (7%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           +E I S+++    +L          Q  ++K R   + +   + G H V  AL + +  +
Sbjct: 3   NEIITSVQNPLVKRLH---------QLLSRKGR--EEQQRFLVEGAHLVEEALKSGAEVV 51

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             +   +  +      A   HP  V+ +  P+T+   + +    QG+  E     +    
Sbjct: 52  TVIYDQQRDMDPACQRALANHPEAVQVIAAPETVLAKLSETKSPQGIVAEVKKTAADWAK 111

Query: 128 AVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            V   +      LL+ LD + DP N+G ILR+A A + DG++         +  + ++  
Sbjct: 112 WVDQKREEQGSLLLLFLDEIQDPGNLGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRATM 171

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGL 240
           GAL  IP     +L D   +  + G + +  S + +    ++       AL++G EG+G+
Sbjct: 172 GALFRIPVF-TQSLVDTADEWKAKGGRVLISSLEQNSVSYDEADYAGLTALVIGNEGRGV 230

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +    A    H+ + G  ++LN + AA + +Y  Q 
Sbjct: 231 SKEMFAKADQFVHIPLYGGAESLNAAVAAGIFVYEAQR 268


>gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
 gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
          Length = 254

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R    +Y                    L G H +  A
Sbjct: 1   MKEIQSVKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +       QG+      
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +L + +  M   GF   G    +    L++  K +  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +   +A    ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSSADQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
 gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
          Length = 254

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R    +Y                    L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +       QG+      
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TSKDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +L + +  M   GF   G    +    L++  K +  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|160941168|ref|ZP_02088505.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435729|gb|EDP13496.1| hypothetical protein CLOBOL_06061 [Clostridium bolteae ATCC
           BAA-613]
          Length = 270

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 10/260 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K++ S   K++   +     + G+             +  L  T+N     D   
Sbjct: 6   SNKQVKRVVSLRSKAKARREEGMYVVEGLRMCREL---NPEDVDALYVTENFAGDADNRK 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDH 140
            +    P +TV    ++ +   +   QG+            D V+ +       +MVL+ 
Sbjct: 63  WMGRFRP-ETVSDVVMNVMADTQ-TPQGVLAVVRQKRYTMDDIVKPAPDGRSLAIMVLET 120

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+       GI+     +   +  + +S  G++  +P++   +L DA  
Sbjct: 121 IQDPGNLGTIIRAGEGAGITGIVMNHDTADIYNPKVIRSTMGSIFRMPFVYADDLQDACL 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            M + G +            +QE   D +  ++G E  GL  +T   A  +  + M G +
Sbjct: 181 LMKNRGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEANGLTEETTSLADCLVKIPMEGKV 240

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN + AA+V ++ T    
Sbjct: 241 ESLNAAIAASVLMFETARQR 260


>gi|225850140|ref|YP_002730374.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
           EX-H1]
 gi|225646622|gb|ACO04808.1| RNA methyltransferase, TrmH family, group 3 [Persephonella marina
           EX-H1]
          Length = 242

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 7/239 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +   ++G + V  AL +       ++A  + L +            ++ VP + I++  
Sbjct: 2   EDKFVIWGRNPVIEALRSGKELEKIMVAHDSHLPKELVKLAEKRKVKIQRVPRKKIEETA 61

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           G +   QG+    +P+     DA+       +   ++LDH+ DP N+G I+R+A      
Sbjct: 62  GTKKT-QGVVALLSPVSYWDPDALIEHIIEKNGFGVILDHITDPQNVGNIIRTAEVLGSS 120

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  +  S   + V+ K+++GA+ ++P  ++ N+   + K    G   I +     KP+
Sbjct: 121 GIIVPRERSSPINEVVVKASTGAVFYLPIAKVGNIRQFIDKFKKRGGWVISVE-KGGKPI 179

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +        ++LG+EGKG+     E +  +  + M G I +LNVS AAA++L+     
Sbjct: 180 HKVSFPFPALIVLGSEGKGVSKTVLENSDMIVSIPMFGKITSLNVSAAAAISLWEVSKQ 238


>gi|170783051|ref|YP_001711385.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 357

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 11/249 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVK 94
           +  R   Q E+  + G ++V  AL    P+  ++     + +   +           PV 
Sbjct: 98  RARRAKQQDESEVVTGRNSVVEALRAKIPATALYIASRIEYDDRVKEVLSLATGRGIPVL 157

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNI 147
            V    +D+I G +AVHQGLAL+  P        + +         L++ LD + DP N+
Sbjct: 158 EVMRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTISRGQVPLMVALDGITDPRNL 217

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI+RS  AF   G+I  +R S   +A   K+++GA    P    SNLT  L+ +   G 
Sbjct: 218 GAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMASNLTQTLKALKQRGV 277

Query: 208 QTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +GL       L +    D  I +++G+EGKGL     ET  ++  + +    ++LN  
Sbjct: 278 FVVGLDGGGDMSLHEFTLADRPIVVVVGSEGKGLSRLVTETCDTIVSIPIGASTESLNAG 337

Query: 267 NAAAVALYI 275
            AA+V LY 
Sbjct: 338 IAASVTLYE 346


>gi|148381081|ref|YP_001255622.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930840|ref|YP_001385454.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
 gi|153936028|ref|YP_001388861.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
 gi|168179627|ref|ZP_02614291.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
           2916]
 gi|148290565|emb|CAL84694.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
 gi|152926884|gb|ABS32384.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931942|gb|ABS37441.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
           Hall]
 gi|182669725|gb|EDT81701.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
           2916]
          Length = 259

 Score =  216 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD    +   +++D 
Sbjct: 62  LYKKYNINNDIETYVVSYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    GIITTK      +    +S  G++ +IP I   NL + ++
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF+ +  S D+          D + + +G EG G+       +     + MPG  
Sbjct: 178 SLRKKGFKLLVSSLDTNSNFYDVNMKDNMIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|162149380|ref|YP_001603841.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787957|emb|CAP57557.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 233

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/229 (41%), Positives = 130/229 (56%), Gaps = 1/229 (0%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           YG+H   AAL NP R+I Q+LAT++  A L    N P P          ++ + G++AVH
Sbjct: 2   YGLHPALAALGNPERRIRQILATEDGEAALRERLNAPLPMQPHRTDRARLESLCGRDAVH 61

Query: 112 QGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           QG+A+    L S  ++ V      L++LD V DP N+GAILRSA AF    ++  +R +P
Sbjct: 62  QGIAVLADALPSLAIEDVTGRPGPLLLLDQVTDPRNVGAILRSAAAFGAAAVVVMERNAP 121

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
            E+  LAK+ASGALE +P   + NL   L  + S  F  +GL +             ++A
Sbjct: 122 DETGALAKAASGALEIVPLGAVVNLARTLDALKSLDFWVVGLDAGGGILDGTSFGQRRVA 181

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L+LGAEG GLR  T+E    +A L MPG +++LNVSNAAAVALY     
Sbjct: 182 LVLGAEGDGLRRLTREHCDEIAGLAMPGDMESLNVSNAAAVALYELIRR 230


>gi|319952204|ref|YP_004163471.1| RNA methyltransferase, trmh family, group 3 [Cellulophaga algicola
           DSM 14237]
 gi|319420864|gb|ADV47973.1| RNA methyltransferase, TrmH family, group 3 [Cellulophaga algicola
           DSM 14237]
          Length = 254

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 112/240 (46%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +YG+  +  A+N      K+F     K  L +        +      VP + ++++   +
Sbjct: 16  IYGIRAIIEAINADKAIDKVFIQKGLKGDLFKEFETLIRRNGINSSYVPVEKLNRLT--K 73

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+   TL+ +         + L ++LD ++D  N GAI+R+A     DG
Sbjct: 74  GNHQGVIATISPITFFTLEELVEKVSAKETTPLFLLLDQLSDVRNFGAIIRTAECTGVDG 133

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K+ +   +A   K+++GA   +P  ++ ++ DA+  + + G +TI  +  ++  + 
Sbjct: 134 IIIQKKGAAPVTADTIKTSAGAAFKVPIAKVDHIKDAVFYLQASGIKTIAATEKTENSVY 193

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                +  A+I+G+E  G+ P   +     A + + G I +LNVS A  V LY      +
Sbjct: 194 DISFKEPCAIIMGSEDLGISPSILKVVDDKAKIPLLGEIGSLNVSVACGVFLYEAVRQRS 253


>gi|15843192|ref|NP_338229.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
          Length = 253

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 12/231 (5%)

Query: 53  GVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVP--PQTIDKIVGKE 108
           G + V   L    P+  ++  L T+ A  RL           +  V      +D++    
Sbjct: 3   GRNPVLECLRAGVPATALYVALGTE-ADERLTECVARAADSGIAIVELLRADLDRMTANH 61

Query: 109 AVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +HQG+AL+  P      D +      +   LL+ LD+++DP N+GAI+RS  AF   G+
Sbjct: 62  -LHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHGV 120

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+ 
Sbjct: 121 LIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALDD 180

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 181 VDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 231


>gi|262197042|ref|YP_003268251.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
           DSM 14365]
 gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
           DSM 14365]
          Length = 267

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 23/250 (9%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR--------LDWDANLPHPFPVKTVPPQTI 101
            +YGV  V   L   +R+I  L    +  +R           +        V+ +  + +
Sbjct: 6   LVYGVGPVEELLGRRAREIAVLYVNPSRRSRQRAGDPVAAVAEQARRRGVSVEELSREQL 65

Query: 102 DKIV--------GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIG 148
           D +V        G    HQG+           L+ +     +   L + LD V DPHN+G
Sbjct: 66  DALVAGRGDAEDGGRVHHQGVVALVGAFEYAALEDLIAAPRQRPALFVALDSVTDPHNLG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA     DG+I  K  +   S V+ K ++GA E I   +++NL  AL+++      
Sbjct: 126 AIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGATEQIAIAQVTNLARALEQLKQAEVW 185

Query: 209 TIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVS 266
             GL + +    L        + L+LGAEG GLRP    T   +  + M G  + +LNVS
Sbjct: 186 IAGLAAGEGATSLPAFDATGALCLVLGAEGTGLRPLVARTCDFLIEIPMLGAGVGSLNVS 245

Query: 267 NAAAVALYIT 276
            AA VALY  
Sbjct: 246 VAAGVALYEV 255


>gi|325921140|ref|ZP_08183011.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325548412|gb|EGD19395.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 249

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIEVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+    A         L   + A     LL++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVVARYAAARLWAENELEALVTAAEGRALLLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A S   ++  K  S + +A + K+++GA + IP + ++NL   L+ +   G    GL+ +
Sbjct: 122 AASVTAVVIPKDKSATVNATVRKTSAGAADRIPVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS AA V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGDIESLNVSVAAGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|116669296|ref|YP_830229.1| RNA methyltransferase [Arthrobacter sp. FB24]
 gi|116609405|gb|ABK02129.1| RNA methyltransferase, TrmH family, group 3 [Arthrobacter sp. FB24]
          Length = 328

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 127/300 (42%), Gaps = 23/300 (7%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKK---MQSFNQKSRHTSQPENLFLYGVHTVS 58
              + K  ++ +    +H  K        K+    +    +S    +     + G ++V 
Sbjct: 30  KGPTPKAEDRPYH--KAHKNKQLAERSAAKRPGAARGAGARSGPKGRATEEVVTGRNSVV 87

Query: 59  AALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            AL    P++ +   +  + +   +           P+       +D++   +A+HQGL 
Sbjct: 88  EALRAGIPAKALHVAIRIEMDDRVKESLKLAAERGIPLLETGKPELDRMTD-DAIHQGLV 146

Query: 116 LETAPLLSPTLDAVR-------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           L+  P        +              N+ L + LD + DP N+GAI+RS  AFS  G+
Sbjct: 147 LQIPPYEYQDAYELAEETVESWKKGHVANAPLFVALDGITDPRNLGAIIRSVSAFSGHGV 206

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-E 221
           I  +R S   +A   K+++GA   +P  R +NL + L+   + G   +GL  D    L +
Sbjct: 207 IVPERRSVGVTASAWKTSAGAAVRVPVARAANLNNTLKAFKNMGIYVLGLDGDGDVSLPD 266

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +  + + +++G+EGKGL    +E    +  + +   +++LN S A  ++LY      A
Sbjct: 267 LSLAKEPVCIVVGSEGKGLSRLVRENCDQIVSIPIDSAMESLNASMAVGISLYEISRQRA 326


>gi|224283924|ref|ZP_03647246.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
           PRL2010]
 gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
           PRL2010]
 gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 332

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 40/295 (13%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNNP 64
           +  A+ R  H+ YK  Q+ N++              + TS  ++L + G + V  AL   
Sbjct: 25  TPKAEDRVYHKAYKAKQATNRRKMADPRLAARRRAAKFTSDSDDLVI-GRNAVLEALRVG 83

Query: 65  SRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
              +   +AT+   +   R            +       +D+I  + + HQG+ L+  P 
Sbjct: 84  VPSMQLYIATRIEHDDRTREIIKLAGAQSLHLLEADRLEMDRIA-RSSNHQGVVLKVQPY 142

Query: 122 LSPTLDAVRN---------------------SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +L  + +                       L + LD V DP N+GA++RSA AF  +
Sbjct: 143 QYSSLAELADIAERKAKAMDVVNSPSARINARPLFIALDGVTDPQNLGAVIRSAAAFGAN 202

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R S S +A   K ++GA  HIP  R+ NLT A++ M   G+ T+GL     K +
Sbjct: 203 GVILPERRSASVTAAAWKVSAGAAAHIPVARVVNLTKAIESMRERGYYTVGLDGGGDKLV 262

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E   + D + ++LG+EGKGL    +E+  ++A + +  ++++LN S AA ++LY
Sbjct: 263 GETGFETDPLIVVLGSEGKGLSRLVRESCDAIAGIPITSMVESLNASVAAGISLY 317


>gi|72162462|ref|YP_290119.1| rRNA methylase [Thermobifida fusca YX]
 gi|71916194|gb|AAZ56096.1| putative rRNA methylase [Thermobifida fusca YX]
          Length = 275

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 113/274 (41%), Gaps = 20/274 (7%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +  S++       RR  +     ++F Q+ R           G   V  AL+ P   + +
Sbjct: 5   EFTSIRSPRIKGARRLAK-----RAFRQRERR------FLAEGPQAVREALDLPD-VVHE 52

Query: 71  LLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           L AT  A+ R             PV  V    + ++  +    QGL    +  +   L A
Sbjct: 53  LYATAEAMQRHTALIRTAEQAGIPVHRVTLDVMGELA-QTVTPQGLLAVCS-FVDVPLSA 110

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V   +L++VL HV DP N G +LRSA A   D +I T       +    ++++G+L H+P
Sbjct: 111 VDRPRLVVVLSHVRDPGNAGTVLRSADAAGADAVIFTDASVDPYNGKCVRASAGSLFHLP 170

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKT 244
            +    + +    +   G   +      K+ L++     +    +A I G E  GL  +T
Sbjct: 171 VVVGVRIEEVTGFLRDAGLTLLAADGQGKRTLDEAADAGMLTGPVAWIFGNEAWGLPQET 230

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              A     + + G  ++LN++ AAAV LY T  
Sbjct: 231 LALADETVSVPIYGRAESLNLATAAAVCLYATAR 264


>gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
           16795]
 gi|164603429|gb|EDQ96894.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
           16795]
          Length = 265

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 115/285 (40%), Gaps = 27/285 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +N+I  K ++KI   K                      K++  ++ +   + G   ++ A
Sbjct: 2   INIIKSKDNDKIKYTKSL-------------------LKTKGRNKEKKFIIEGYRILTLA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L   + K+  +   ++   + D    L         +     +   ++V  E   QG+  
Sbjct: 43  LECDA-KLEYVFINEDFEKKQDHKVLLEELENKNIKIYKTSNKIFSEMVDTENT-QGILA 100

Query: 117 ETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                    ++ +      +++LD + DP N+G I+R+A +   D II  K      +  
Sbjct: 101 VLRYKERDLVNNINQDDKFVLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPK 160

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + +S  G++  +  I+ +   +A+  + +  F  +     ++    +   + KIAL++G 
Sbjct: 161 VIRSTMGSIFDMNIIQTTQ-DEAVDFLKANNFDIVSSYLHTESYYNETTYDGKIALVIGN 219

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E  G+  +    +  +  + + G  ++LN + +AA+ +Y  + + 
Sbjct: 220 EANGINDELISKSDKLVKIPIYGNAESLNAAISAAILMYEIKKYL 264


>gi|294626313|ref|ZP_06704915.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665594|ref|ZP_06730874.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599314|gb|EFF43449.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604643|gb|EFF48014.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 249

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 120/245 (48%), Gaps = 11/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTID 102
            +N ++ GV+ V++++ N +  + ++L    +KN       +        V+ V  Q +D
Sbjct: 3   KQNQWIVGVNAVASSVENDADNVREVLIEAGSKNPRLTEIEEQARRKGIDVRRVNTQALD 62

Query: 103 KIVGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
             VG +  HQG+A   A         L   ++A     L+++LD V DPHN+GA LRSA 
Sbjct: 63  G-VGGQVRHQGVAARYAAARLWAENELEGLIEAAAGRALVLILDGVQDPHNLGACLRSAA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A     ++  K  S + +A + K+++GA + I  + ++NL   L+ +   G    GL+ +
Sbjct: 122 AAGVTAVVIPKDKSATVNATVRKTSAGAADRIAVVAVTNLARCLRDLQKQGVWLYGLAGE 181

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++  L        + L+LG E  GLR  T+E    +  + MPG I++LNVS A  V L+ 
Sbjct: 182 AEASLYSVDLRGNVGLVLGGEADGLRRLTREHCDGLVKIPMPGEIESLNVSVATGVTLFE 241

Query: 276 TQNHF 280
                
Sbjct: 242 AVRQR 246


>gi|313676227|ref|YP_004054223.1| RNA methyltransferase, trmh family, group 3 [Marivirga tractuosa
           DSM 4126]
 gi|312942925|gb|ADR22115.1| RNA methyltransferase, TrmH family, group 3 [Marivirga tractuosa
           DSM 4126]
          Length = 258

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 117/258 (45%), Gaps = 14/258 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHP 90
           M +FN++ +   +    +++G   V  A++       I+     +N L     D      
Sbjct: 1   MTAFNKRPKLNDK---DYIFGTRAVIEAIHAGKEMDNIYIDKEVRNDLVSELMDLCKEQK 57

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143
            P   VP + +++I  K   HQG+    + +   +LD V           L+++LD V D
Sbjct: 58  VPFTKVPIEKLNRITMK--NHQGVIAMVSAVSYASLDNVINEAYAKGKDPLILILDRVTD 115

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N GAI RSA     D I+   + S   ++   K+++GAL +IP  R ++L + ++ + 
Sbjct: 116 VRNFGAIARSAECAGVDAIVIPFKGSAQINSDAVKTSAGALHYIPVCRENSLKNTVEYLQ 175

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +  +   K  +        +A+ILG+E  G+      TA  +A + M G I +L
Sbjct: 176 KSGLQVVACTEKGKDLIYNTPMAQPLAIILGSEEDGISNDLIRTADFLAKIPMTGKIASL 235

Query: 264 NVSNAAAVALYITQNHFA 281
           NVS + A+A++      +
Sbjct: 236 NVSVSCAIAVFEAVRQRS 253


>gi|148270170|ref|YP_001244630.1| RNA methyltransferase [Thermotoga petrophila RKU-1]
 gi|170288875|ref|YP_001739113.1| RNA methyltransferase [Thermotoga sp. RQ2]
 gi|281412488|ref|YP_003346567.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
           naphthophila RKU-10]
 gi|147735714|gb|ABQ47054.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga petrophila
           RKU-1]
 gi|170176378|gb|ACB09430.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga sp. RQ2]
 gi|281373591|gb|ADA67153.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga
           naphthophila RKU-10]
          Length = 242

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 8/238 (3%)

Query: 49  LFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           + +YG   +  AL N     +  FQ +    +      +              + +  + 
Sbjct: 1   MRVYGRKILEEALRNNVPIKKVFFQKMQNPGSYFLSLVEEVEKRGIKYSFESEEKLKNLS 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           G +  HQG+  +       +++ +   +   L+++LD + DPHN+GAI+R++V    +GI
Sbjct: 61  GTKK-HQGVVFDIEEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGI 119

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  + K + G +       ++NL   ++++   G  T     D   P+ +
Sbjct: 120 IIPKDKSVKVTETVVKVSVGTVFRARIAVVTNLARTIEELKEKGVWTYASDIDG-TPIYE 178

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E      A + G EG+G+R   +E    +  + M   I +LNVS +  V L+      
Sbjct: 179 EDFTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236


>gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
 gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
          Length = 248

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 111/274 (40%), Gaps = 31/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  KSE I  LK     K R+                   +     + G H V  A
Sbjct: 1   MTKITSTKSETIKRLKRLMTKKGRQ-------------------ETGQFLVEGEHLVDEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +     ++ QL+  ++   +  W        PV  +     D +   E   QG+      
Sbjct: 42  IRAG--RLVQLIMAESYSPKGTWRL---EDMPVLELSDHVADLLSETEKT-QGVFAVVKM 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                    R  + ++VLD V DP N+G ++R+A A   D ++  K      +A + ++ 
Sbjct: 96  TPVE-----RKMKKVLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVRAT 150

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+L H+    + +L + L ++   GF   G +       EQ    +K+AL++G E +G+
Sbjct: 151 QGSLFHVNVTSV-DLLEKLPELKEDGFHVYGTALSKATSYEQVAFEEKVALVIGNEAQGV 209

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                    +  H+ + G +++LN + AA + +Y
Sbjct: 210 HADVLALCDTRVHIPVLGDVESLNAAVAAGILMY 243


>gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund]
 gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund]
          Length = 261

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 30/284 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MNLI  K +  I  ++                     +K ++  Q E   + G   V  A
Sbjct: 1   MNLIESKDNTLIKYVRKL-------------------RKKKYRVQEEKFLVEGFRFVEEA 41

Query: 61  LNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L +   KI  +L  ++A  +    +    +     +  V  + + ++       QG+   
Sbjct: 42  LKST-FKISHVLVGESAKEKCNSFNIFNIVSENTKISLVKDEILKELCETN-NPQGIIAI 99

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                +  ++    S   ++ D V DP N+G I+RSA A    G+I TK      +    
Sbjct: 100 V---DNKIINIEDKSGFYVLADKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTL 156

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G++  IP I   N  + +  + S GF+ I  S D++          K+ + +G EG
Sbjct: 157 RSTMGSIFKIPIIE-DNEFEIINVLKSKGFKLIVSSLDTENNFFDIDLTGKVIICVGNEG 215

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279
            G+  +          + MPG  ++LN   AA++ +Y    QNH
Sbjct: 216 NGVSDEVYSLGDEKVKIPMPGNAESLNAGVAASIMMYEVVRQNH 259


>gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
 gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
          Length = 254

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R    +Y                    L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +       QG+      
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMML 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TSKDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +L + +  M   GF   G    +    L++  K +  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
 gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
          Length = 363

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 11/251 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTV 96
            R      +  + G + V  AL          +    +   RL     L       V  V
Sbjct: 111 GRPRRTEGDELVVGRNAVVEALRAGVPSSTLFIAGGLDFDERLADARRLAGRAGIAVADV 170

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150
               +D++ G  A HQGLAL   P      D +          LL+ LD V DP N+GA+
Sbjct: 171 GRTDLDRMCGT-APHQGLALVVPPFRYAHPDDLLARARSSPPGLLVALDGVTDPRNLGAV 229

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA AF   G++  +R +   +A   K+++GA   +P  R +NL   L    + G   +
Sbjct: 230 VRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLARTLVSYAAGGQFVV 289

Query: 211 GLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           GL++DS+  +++  +  D + L++G+EG+GL    ++       + M G +++LN   AA
Sbjct: 290 GLAADSEVSIDELTMATDPLVLVIGSEGRGLSRLVEQRCDVRVRIPMAGAVESLNAGVAA 349

Query: 270 AVALYITQNHF 280
            + L       
Sbjct: 350 GITLAEIARRR 360


>gi|289522994|ref|ZP_06439848.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503537|gb|EFD24701.1| RNA methyltransferase, TrmH family, group 3 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 258

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 12/239 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKI 104
               YG H V A L     +  ++L ++    +L    +D    +  PV  V  +T+D++
Sbjct: 7   EDICYGRHPVIALLEESPHRCHKILISEGINKKLVDDIYDRARKNGIPVLKVDNKTLDRV 66

Query: 105 VGKEAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            G  A HQG+    +         L   +   +++ L++V D + DP+N+GAI+RSA  F
Sbjct: 67  SG-GASHQGVLAYISQGNLGDINQLIDRITEKKDNSLVVVADKIKDPNNLGAIIRSAEVF 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I  KR S   S+ + KS++GA   +  + +SNL  A++++   G   +GL   + 
Sbjct: 126 GALGVIFPKRNSAYPSSAVHKSSAGASMRVMMVSVSNLVSAIKRLQENGMWVVGLDQRAD 185

Query: 218 KPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + L  E     K+ L++G+E  G+ P        +  + M G   +LN + AA++ +Y 
Sbjct: 186 RYLWDEPSIRGKLTLVVGSEEAGISPIVARACDDIRSIPMFGKTGSLNAAVAASIGMYE 244


>gi|237743868|ref|ZP_04574349.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229432899|gb|EEO43111.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 234

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID     
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A ++  L+++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGVAVYISNYDYYKDFDEAYEELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWIYGAAGEANINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E   +K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYPNKVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|284043154|ref|YP_003393494.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
           DSM 14684]
 gi|283947375|gb|ADB50119.1| RNA methyltransferase, TrmH family, group 3 [Conexibacter woesei
           DSM 14684]
          Length = 256

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 115/250 (46%), Gaps = 10/250 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKT 95
           +   T   +   LYG + V  AL   SR++  + AT +A+    W A + H      V  
Sbjct: 10  REPRTLPDDVTILYGRNAVHEALR-GSREVQHIWATAHAVEE-PWLAAVAHDASAVDVNV 67

Query: 96  V-PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILR 152
           V     I++  G    HQG+  + AP     +D +      L++ LD + DP N+GAI R
Sbjct: 68  VADGGWIERRSGSPD-HQGVCAQVAPFRYAYVDELLAVEHPLIVALDEIQDPQNLGAIAR 126

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      G++   R S   +  + K+++GA+EH+P  R  NL D L      G    G 
Sbjct: 127 TAECAGATGLVIPARRSADVTPAVCKASAGAVEHLPIARARNLADFLGDARGVGAWVYGA 186

Query: 213 SSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             D   P      +   + L+LG+EG+GLRP+   +  ++  L + G I +LNVS AA+ 
Sbjct: 187 EGDGGVPYTGVDYSGPGVVLVLGSEGRGLRPRVAASCDALIALPLRGRIGSLNVSAAASA 246

Query: 272 ALYITQNHFA 281
            LY       
Sbjct: 247 LLYEIVRQRG 256


>gi|327400489|ref|YP_004341328.1| TrmH family RNA methylase [Archaeoglobus veneficus SNP6]
 gi|327315997|gb|AEA46613.1| RNA methyltransferase, TrmH family, group 3 [Archaeoglobus
           veneficus SNP6]
          Length = 227

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 21/240 (8%)

Query: 49  LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + +YGV++V  AL    + K++  LAT N   RL+  A      P+  VP + +      
Sbjct: 1   MRVYGVNSVVEALKAKKANKVY--LATGNRRDRLERMARRA-GVPIVYVPKEKL------ 51

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
               QG+A + +P+    +D      +R +  L+ LD V DP N+GA +R+A  F C G+
Sbjct: 52  PPDSQGVAADISPIRYHDVDYLIELCLRKNSFLLFLDGVEDPRNLGAAIRTAEFFGCAGV 111

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  KR +   +  + K ++GA  H+   R  N+T+AL+K   +G + IG   D +  +E 
Sbjct: 112 VIPKRRAVQVNETVVKVSAGAALHVSIAR-DNITNALKKAKKFGIKVIGAELDGEN-IEN 169

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  AL++G E +G+    ++    +  +   G + +LN+S AA + +Y     F+K
Sbjct: 170 ADLTPPAALVIGGEDRGISQPVRKLCDFLVKIPGRGKVGSLNLSVAAGILMYE----FSK 225


>gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 255

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 118/286 (41%), Gaps = 35/286 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ ++               ++++KMQS  +K R +S      + G H V  A
Sbjct: 1   MQSITSNQNNRV---------------KEWRKMQS--KKGRLSS--GQYIIEGWHIVDEA 41

Query: 61  LNNPSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALE 117
           + +   +I  ++ T  N L +L+ D   P       + P+    I   E   QG+   L 
Sbjct: 42  IKHDQ-QIDAVIVTDANFLDQLEVD---PAVTDTYLITPEVAKHISATE-TPQGVFAVLT 96

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T        + +  S   ++LD++ DP NIG ++R+A A   +G+I  K  +   +  + 
Sbjct: 97  TENYHESIPEKLGGS--WLMLDNIQDPGNIGTMVRTADAAGMNGVIFGKGTADIYNPKVV 154

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAE 236
           +S  G+  H+      +L   +   +       G    D     +      + AL++G E
Sbjct: 155 RSMQGSQFHVRL-YSGDLAVWMAAFNKHNVPVYGTELNDQAISYDDVEPTKQFALVMGNE 213

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G G+     +      ++ M G  ++LNV+ A  + ++    HF K
Sbjct: 214 GNGVSADLLDKTDQNLYIPMNGEAESLNVAVATGILIF----HFVK 255


>gi|78044128|ref|YP_361140.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996243|gb|ABB15142.1| RNA methyltransferase, TrmH family, group 3 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 237

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 14/238 (5%)

Query: 51  LYGVHTVSAALNNPS-RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           +YGV+ V  AL      K++    TK+   R        +  PV  VP + +       A
Sbjct: 4   IYGVNPVREALMKGIVNKLYLSRETKDKNIRELLLLARENKVPVVEVPREKL------HA 57

Query: 110 VHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             QG+  + +P+    +D +            ++VL+H+ DP N+GAILRSA AF   G+
Sbjct: 58  KSQGVEADISPVKYVEIDDILAIAERKAEPLFILVLNHLEDPQNLGAILRSAEAFGVHGV 117

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  KR +   +  +AK+++GA   +P  R +N+ + L+ +   G   +G  + SK  L  
Sbjct: 118 IIPKRRAVQVTGAVAKASAGAYLKVPVARCTNVAETLRYLKEKGAWVVGADAKSKASLWD 177

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +AL++G E  GL             + M G I +LN S AAA+ +       
Sbjct: 178 TDFKLPLALVIGGENVGLTSHILRECDFTVSIPMVGTINSLNASVAAALLMAEVVRQR 235


>gi|309811775|ref|ZP_07705549.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308434196|gb|EFP58054.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 268

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 113/271 (41%), Gaps = 11/271 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I S  D   A       DY ++     + +  ++           +  AL    R    
Sbjct: 4   RITSPDDDRVA-------DYFRLTDVALRKKLETERGLYIAESEKVIRRALARGDRPRSF 56

Query: 71  LLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           L+  +      D  A+      PV       I+ + G       LA    P L+   + +
Sbjct: 57  LMGQRWLDDLADIVADAEAADVPVYVGEADVIESMTGFHLHRGALASMNRPALALPEELL 116

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+++ ++VL+ + D  N+GAI RSA A   D ++ T R +        + + G +  +P+
Sbjct: 117 RDARRVVVLEDIVDHTNVGAIFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPW 176

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDK--IALILGAEGKGLRPKTQE 246
            RI     ++ ++   G+    ++  D    L++    +   +AL++G EG GL  +T  
Sbjct: 177 TRIDPWPGSVTRLQEAGWTVAAMALADDSVTLDELAAREPERLALVMGTEGDGLGTRTVA 236

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  + M G + +LNV+ A+AVA+Y  +
Sbjct: 237 ACDVTVRIPMAGGVDSLNVAAASAVAMYTLR 267


>gi|55822234|ref|YP_140675.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|55738219|gb|AAV61860.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
          Length = 245

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K++  I + +      L+R HR                   +  + G H    A
Sbjct: 1   MEVIQSKQNASIKTARKL----LQRKHR-----------------KTSYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  I Q+   +    R      + +   VK V P+ + ++   +   QG+  E A 
Sbjct: 40  -KASGAHILQIFVLEEMADR------VANMSKVKLVSPEVLKELCETQ-TPQGIVAEVAK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D++    LL  L+ V DP N+G ++R+A A   DG+  + + +   +    +S 
Sbjct: 92  QTQALPDSLSGKYLL--LEDVRDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R   + + ++         +  +        + +K     AL++G EG+G
Sbjct: 150 QGSHFHLPIYRGP-ILEMVETCKKQDLPVLATTLSEVSVDYKAVKTDGNFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  E+A  + H++MPG  ++LNV+ AA + ++
Sbjct: 209 ISKEMAESANQLVHINMPGQAESLNVAVAAGILMF 243


>gi|116630022|ref|YP_815194.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853791|ref|ZP_04644157.1| rRNA methylase [Lactobacillus gasseri 202-4]
 gi|282851363|ref|ZP_06260728.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
 gi|311110348|ref|ZP_07711745.1| rRNA methylase [Lactobacillus gasseri MV-22]
 gi|116095604|gb|ABJ60756.1| rRNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238833600|gb|EEQ25871.1| rRNA methylase [Lactobacillus gasseri 202-4]
 gi|282557331|gb|EFB62928.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri 224-1]
 gi|311065502|gb|EFQ45842.1| rRNA methylase [Lactobacillus gasseri MV-22]
          Length = 253

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 12/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL N    ++ +L T  AL +L    
Sbjct: 8   NNPTIKNLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSEALEKLTTSY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     +K      I + +      Q + +   P+  P   +    +  +VLD++ DP 
Sbjct: 66  RLKDDKVIKITD--AIAEHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  ++   + +A+      
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNP-ILEAISSFKEN 180

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G        D + K L   I   ++AL++G E  G      ETA    ++ + G  ++LN
Sbjct: 181 GIPVYVSILDKTAKSLNNCIPVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLN 240

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 241 AAVAAGIMIY----HFS 253


>gi|294085941|ref|YP_003552701.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665516|gb|ADE40617.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 312

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 90/270 (33%), Positives = 137/270 (50%), Gaps = 20/270 (7%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           S  ++      R     ++      K+         FL+G H V+AAL NP R+I  L  
Sbjct: 34  SASNAPRRGAPRRGAPARQNDDSQIKAAPKPPQGGYFLWGRHAVAAALVNPDRRIAALYV 93

Query: 74  TKNALARLDW---------DANLPHPFPVKTVPPQTIDKIVGKEA---VHQGLALETAPL 121
           T ++    D           A LP   P++    + +D I G ++   VHQG+A    PL
Sbjct: 94  TDDSRDSFDEMWQTLAMDRQAELPDARPIE---RRRLDGIGGHDSEKVVHQGMAAAVWPL 150

Query: 122 LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            +P LD            +++LD ++DP N+GAILRSA AF CD IITT+R++P E+  L
Sbjct: 151 DAPHLDDFIADIADKPVRIIMLDQISDPRNVGAILRSARAFGCDAIITTQRHAPEENGAL 210

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           A++A+GALEHIP IR+ NL  A++ +        GL+ D    +       ++A++LGAE
Sbjct: 211 ARTATGALEHIPIIRVVNLARAVESLQDHDITVAGLAGDGTMDVGALADFPRLAIMLGAE 270

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           G GLR  ++E    +  + +     +LNVS
Sbjct: 271 GPGLRRLSREHCDHLVRIDIAPDADSLNVS 300


>gi|118444322|ref|YP_877839.1| rRNA methylase [Clostridium novyi NT]
 gi|118134778|gb|ABK61822.1| rRNA methylase [Clostridium novyi NT]
          Length = 262

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 62/284 (21%), Positives = 115/284 (40%), Gaps = 30/284 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MNLI  K +  I  ++                     +K ++  Q E   + G   V  A
Sbjct: 1   MNLIESKDNTLIKYVRKL-------------------RKKKYRVQEEKFLVEGFRFVEEA 41

Query: 61  LNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L +   ++  +L  ++A+ +    +   ++     V  V  + + ++       QG+   
Sbjct: 42  LKST-FQVSHMLIAESAIEKCNSFNILNSVDENTKVSLVKDEILKELCETN-NPQGIIAV 99

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                +  +     +   +++D V DP N+G I+RSA A    G+I TK      +    
Sbjct: 100 V---DNKKISIEDKNGFYILIDKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTL 156

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +S  G++  IP I   N  + +  +   GF+ I  S D++          K+ + +G EG
Sbjct: 157 RSTMGSIFKIPIIE-DNDFEVINDLKLKGFKLIVSSLDTENNFFDIDLTKKVIICVGNEG 215

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279
            G+  +          + MPG  ++LNV  AA++ +Y    QNH
Sbjct: 216 NGVSDEVYNLGDERVKIPMPGDAESLNVGVAASIMMYEVVRQNH 259


>gi|170759752|ref|YP_001788451.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406741|gb|ACA55152.1| RNA methyltransferase, TrmH family [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 259

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 114/262 (43%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD    +   +++D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKREKLDL--QNGFYILVDK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL + ++
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF+ +  S D+          D I + +G EG G+       +     + MPG  
Sbjct: 178 LLQKKGFKLLVSSLDTNSNFYDVNMKDNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|254302088|ref|ZP_04969446.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322280|gb|EDK87530.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 234

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     +        
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFYTGKKI------- 56

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A ++  L+++LD + DP N GAI+RSA  F  D
Sbjct: 57  -ENSQGVAVYISNYDYYKDFDEAYEELAGKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G   ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAVGEANINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E   +K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYPNKVVLVLGNEGSGIRKKVREHCDKLVKIPMYGQINSLNVSVASGILL 228


>gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia
           dioxanivorans CB1190]
          Length = 329

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 14/257 (5%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-ATKNALARLDWDANLPHPF 91
           + ++++     PE +   G + V   L    P+  +   + AT +   +           
Sbjct: 73  NRSRRAGDGETPETVL--GRNPVVECLRAGVPATALHVAVGATADERVKEAVHLAADAGI 130

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDP 144
            +  VP   +D++ G  A+HQG+AL   P      D +           L+  LD V DP
Sbjct: 131 SILEVPRNDLDRMAG-GALHQGVALVVPPYEYAHPDELLEAAVGSGRPALIAALDGVMDP 189

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA++RS  AF   G++  +R +   +AV  ++++G    +P  R +NLT  LQ+  +
Sbjct: 190 RNLGAVVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNLTRTLQEYAN 249

Query: 205 WGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G    GL++D    ++      D + L++G+EGKGL    +ET      + +   +++L
Sbjct: 250 TGLMVAGLAADGDVSIDDFDLATDPLVLVIGSEGKGLSRLVRETCDVTVSIPLAREVESL 309

Query: 264 NVSNAAAVALYITQNHF 280
           N S AA V L       
Sbjct: 310 NASVAAGVVLAEVARRR 326


>gi|189499560|ref|YP_001959030.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides BS1]
 gi|189495001|gb|ACE03549.1| RNA methyltransferase, TrmH family, group 3 [Chlorobium
           phaeobacteroides BS1]
          Length = 247

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 9/239 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
            +YG ++V   L +   KI ++     T +   +           P+     + + +I G
Sbjct: 8   VVYGRNSVLELLGSDPEKIEKIYMQFNTGHFKLKEILITARRSKIPLGKARLEKLSEIAG 67

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
               HQG+    + +    L+ +       S LL+VL  +NDPHN+GAI+R+A A + DG
Sbjct: 68  TTK-HQGVCALISSVRYYQLEEILQHPRNTSPLLVVLPGLNDPHNVGAIIRTAEAVATDG 126

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  +      +A + K+++GA+ H    ++ +L   L+ +   GFQ I     ++K   
Sbjct: 127 VILVEGKGSPVNAAVHKASAGAVSHSRLCKVKSLQACLKMLREEGFQIIAADMHAEKNYT 186

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +       A I+G E KGL         ++  + M G +++LNVS +A V LY      
Sbjct: 187 EVDFRIPSAFIMGTEEKGLDALNLNEKDTLVRIPMAGCVESLNVSVSAGVLLYEAMRQR 245


>gi|154497125|ref|ZP_02035821.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
           29799]
 gi|150273524|gb|EDN00652.1| hypothetical protein BACCAP_01418 [Bacteroides capillosus ATCC
           29799]
          Length = 258

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 10/236 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHP 90
           M+    + R      +  + G + V  AL    P  KIF      +A       +     
Sbjct: 1   MREQKDRRREPEAEADGMIEGRNAVIEALRAGTPIDKIFLARGETDATLGHIASSAREKG 60

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVND 143
             V     + +D +    A HQG+    A     T+D + N         L++V D ++D
Sbjct: 61  IVVVEADRRKLDGMSRTHA-HQGVIAMAAVREYATVDDILNAAREKGEPPLIVVCDELSD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GA++R+A      G+I  KR S   +AV+AK+++GA+ ++P  R+ NLT  L+++ 
Sbjct: 120 PHNLGAVIRTAECAGAHGVIIPKRRSAGLTAVVAKTSAGAVSYVPVARVPNLTALLKELK 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             G    G ++D    L         A+++G+EG G+     E       + M G 
Sbjct: 180 DEGLWIFGTAADGNTTLYDADLKGPAAIVIGSEGDGMGRLVSEQCDFKVSIPMKGK 235


>gi|150025415|ref|YP_001296241.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771956|emb|CAL43430.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 244

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 115/241 (47%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+ N  ++I ++    +A + L  +       +      VP + ++++   
Sbjct: 7   IFGIRAIIEAI-NAKKEIDKVFIQSDAQSELMQELQKLMKKNSINFSYVPVEKLNRLTPN 65

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG     AP+    L+ +           L ++LD ++D  N GAI+R+A     D
Sbjct: 66  --NHQGAVATIAPIAFQDLEKLIDTVIESGKKPLFLILDQLSDARNFGAIIRTAECTGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+ S   +    K+++GA+ ++P  ++ ++ DA+  + + G +T+  +  ++  +
Sbjct: 124 GIIVQKQGSAPVNGDTVKTSAGAVFNVPICKVDHIKDAIFLLQASGIKTVAATEKTESNI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N+ +A+I+G+E +G+ P   +     A L M G I +LNVS A    LY T    
Sbjct: 184 YDISLNEGVAIIMGSEDRGVNPSVLKIVDEKAKLPMFGTIGSLNVSVACGAFLYETVRQR 243

Query: 281 A 281
            
Sbjct: 244 G 244


>gi|256846015|ref|ZP_05551473.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|256719574|gb|EEU33129.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
          Length = 234

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K  + +   D        +     + ID     
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGEIVQKLKDLASKRNIKIFY-TGKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A ++  L+++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGVAVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E  ++K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEENYSNKVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6]
 gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF]
 gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6]
 gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF]
          Length = 254

 Score =  215 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 113/282 (40%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R    +Y                    L G H +  A
Sbjct: 1   MKEIQSVKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +       QG+      
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +L + +  M   GF   G    +    L++  K +  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +   +     ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSSTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|317499626|ref|ZP_07957888.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893101|gb|EFV15321.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 261

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 105/256 (41%), Gaps = 9/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  K++    + +R   + E   + G+   +     P   ++++ A+++     +   
Sbjct: 10  QNKQIKQIIKLKKSARERRKQELFLVEGIRMFTEI---PEEYLYKVYASEDFYN--EHRV 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDP 144
              H   V+ V PQ + +I       QG+      +     D +     L +VL+++ DP
Sbjct: 65  IFEH-MDVELVSPQVMKEISDT-MTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+      +G+I +       +  + +S  G++  +P++ + +L +  + M  
Sbjct: 123 GNLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRSTMGSIFRVPFVYVDDLLEVAETMKQ 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               T     +      +E      A  +G EG GL  K  +       + M G +++LN
Sbjct: 183 KNIITYAAHLNG-TDYTKEDYQKGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLN 241

Query: 265 VSNAAAVALYITQNHF 280
            + A+ + +Y  +   
Sbjct: 242 AAMASGLLVYEARRQR 257


>gi|167768153|ref|ZP_02440206.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
 gi|167709677|gb|EDS20256.1| hypothetical protein CLOSS21_02709 [Clostridium sp. SS2/1]
 gi|291560179|emb|CBL38979.1| rRNA methylases [butyrate-producing bacterium SSC/2]
          Length = 257

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 105/256 (41%), Gaps = 9/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  K++    + +R   + E   + G+   +     P   ++++ A+++     +   
Sbjct: 6   QNKQIKQIIKLKKSARERRKQELFLVEGIRMFTEI---PEEYLYKVYASEDFYN--EHRV 60

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDP 144
              H   V+ V PQ + +I       QG+      +     D +     L +VL+++ DP
Sbjct: 61  IFEH-MDVELVSPQVMKEISDT-MTPQGVLALVKMMKYSLEDLLEQEKPLFLVLENLQDP 118

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+      +G+I +       +  + +S  G++  +P++ + +L +  + M  
Sbjct: 119 GNLGTILRTGEGAGINGVIMSHDTVDIYNPKVTRSTMGSIFRVPFVYVDDLLEVAETMKQ 178

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               T     +      +E      A  +G EG GL  K  +       + M G +++LN
Sbjct: 179 KNIITYAAHLNG-TDYTKEDYQKGTAFFIGNEGNGLTDKLTDKVQKKIKIPMCGKVESLN 237

Query: 265 VSNAAAVALYITQNHF 280
            + A+ + +Y  +   
Sbjct: 238 AAMASGLLVYEARRQR 253


>gi|34763276|ref|ZP_00144235.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887047|gb|EAA24159.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 234

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID     
Sbjct: 4   IIGINPVTEALLNKEKNIEKLEFYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A ++  L+++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGVAVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E  ++KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEENYSNKIILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|255281427|ref|ZP_05345982.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255267915|gb|EET61120.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 260

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 103/257 (40%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +     K++   +       G   V      P   + +   +++   + + + 
Sbjct: 6   SNKQIKNLVQLLTKAKARREQGLFVAEG---VRMYRETPKDDLVKTYVSESFYEK-EENR 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDP 144
            L     ++ V  +            QG+              +R  + LL++L+ + DP
Sbjct: 62  ALLQGTELEIVTDRVFAS-TSDTKTPQGILCLVRQREYTPAQMLRAENPLLLLLEDIQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I R+A A    GII +   +   +    +S  G++  +P++   ++    +K+ +
Sbjct: 121 GNLGTIFRAAEAAGATGIIMSSGTADIYNPKTIRSTMGSIYRMPFLYTKDIAAMQEKLKA 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G +T            ++      A ++G EG+GL     E A +   + M G +++LN
Sbjct: 181 RGIRTYAAHLKGSCTYTEQAYRKGCAFLIGNEGRGLSDALAEKADARIKIPMSGEVESLN 240

Query: 265 VSNAAAVALYITQNHFA 281
            + +AA+ ++  +   +
Sbjct: 241 AAVSAAILMFEAKRQRS 257


>gi|291563819|emb|CBL42635.1| rRNA methylases [butyrate-producing bacterium SS3/4]
          Length = 260

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 110/271 (40%), Gaps = 16/271 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S K+             K +    +K+R  ++     + G   V  A   P  ++  +
Sbjct: 2   ITSTKNDQV----------KAVIELKKKARARNEQGLFVVEG---VRMAAELPKDQVKSI 48

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR- 130
             ++   A+   +A +   +P   +   ++  ++      QG+            + ++ 
Sbjct: 49  YVSE-TFAKNPENAAILAEYPGYELVSDSVFAVMSDTQTPQGVLALVRQFSYGMDELLKS 107

Query: 131 -NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                LMVL+++ DP N+G ILR+       G+I ++      +  + +S  G++  +P+
Sbjct: 108 DRPAHLMVLENLQDPGNLGTILRAGEGAGITGLIMSRDTVDIYNPKVIRSTMGSVFRVPF 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   +  + + G +        K   EQE      A ++G EG GL  K  + A 
Sbjct: 168 FYTDDLEQTVLDLKARGIRVFAAHLAGKNNYEQEDYTGNTAFLIGNEGNGLTEKLSDMAD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   + M G +++LN + AA++ ++ T    
Sbjct: 228 TWVKIPMEGKVESLNAAIAASILMFETARQR 258


>gi|255535982|ref|YP_003096353.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342178|gb|ACU08291.1| rRNA methylase [Flavobacteriaceae bacterium 3519-10]
          Length = 265

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 101/251 (40%), Gaps = 11/251 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKT 95
           +  +     ++ F++G+  V  A+       KIF   A +  +          H      
Sbjct: 11  ESGQAEPNKKDDFIFGLRPVIEAIEAGKTIDKIFMQNALQGDIYYELKTLLSKHNIRPNY 70

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
           VP + +++   K   HQG+    + +   ++  V         +  L++LD + D  N G
Sbjct: 71  VPIEKLNRFTRK--NHQGVVAFISDVPFESIQDVLPQLFEEGKTPFLLILDRLTDVRNFG 128

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+A       II  ++ +   ++   K+++GA+ ++   +  NL  A+  +   G Q
Sbjct: 129 AICRTAECVGVHAIILPEKGAAPINSDAIKTSAGAIYNLRICKEKNLAHAVDFLQQSGLQ 188

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
               S  ++K +         A+++G E  G+  +    +     L + G  ++LNVS A
Sbjct: 189 VFSASEKAQKLIYDVDFTQPCAIVMGNEETGISKEVLHHSDEKIKLPIEGKTQSLNVSVA 248

Query: 269 AAVALYITQNH 279
               LY     
Sbjct: 249 CGAILYEAVRQ 259


>gi|193216530|ref|YP_001999772.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
 gi|193001853|gb|ACF07068.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
          Length = 229

 Score =  215 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG ++V  AL      I ++   K  + +     N      ++ +  Q ++++V K  
Sbjct: 4   LIYGKNSVLDALKAN-FPIAKIYLQKGLVNKAITFKN------IEYLSIQEMNQLV-KNG 55

Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG   E        L  +      L+++LDH+ DPHN GAI+R+A  F    II  K 
Sbjct: 56  NHQGYIAEIYNYQYYDLGTIFKDKPNLVLMLDHIQDPHNFGAIIRNANGFGIKHIIIPKN 115

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKN 226
            +   +  + K +SGA   I  IR+ +L D L+++   GF     + D K   L +    
Sbjct: 116 RACEVTPTVLKISSGAFTEIKIIRVGSLFDTLKELQKNGFWIYSSTLDDKATKLHKTKFA 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               LI+G E  G+     + + ++ ++   G +++LNV++A AV LY  
Sbjct: 176 TPTCLIVGNEESGVSHTLIKHSDALVYIEQKGTVQSLNVASATAVLLYEA 225


>gi|325833012|ref|ZP_08165639.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
 gi|325485729|gb|EGC88194.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella sp. HGA1]
          Length = 248

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 19/248 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F+ G   V  AL      I  +L      ++ L              V+ VP + +D  
Sbjct: 3   DFIEGKRPVIEALRTGV-PIKSILMADNVQRDGLIEDILRKAKRAGATVEMVPRKVLDGK 61

Query: 105 VGKEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
             + + HQG+  + AP               + +      L+++LDH+ D  N+GA+ RS
Sbjct: 62  SDRGS-HQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GI+   + S    A   KS++GA+ H+P  ++SNL   + ++   GF   G +
Sbjct: 121 AEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGAT 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +K  + +     KIAL++G E +G+     E    +  L + G + +LNV+ AA   +
Sbjct: 181 EHAKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACM 240

Query: 274 YI--TQNH 279
           Y    QN 
Sbjct: 241 YEWLRQNQ 248


>gi|325280595|ref|YP_004253137.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
           splanchnicus DSM 20712]
 gi|324312404|gb|ADY32957.1| RNA methyltransferase, TrmH family, group 3 [Odoribacter
           splanchnicus DSM 20712]
          Length = 247

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 14/242 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++G+  V  A+      I +++  +     L    +        P + VP          
Sbjct: 9   IFGIRAVIEAIQQEKE-IDKVMLKQGVRGELFQQLFSLIRERNIPFQYVPEDVFKPFA-- 65

Query: 108 EAVHQGLALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG+  E +P+    L       +A      +++LD V D  N GAI+RSA     D
Sbjct: 66  DRNHQGVLAEISPVPYQDLTEVLDGVEAAGRVPFVLILDRVTDVRNFGAIVRSAECAGVD 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKKP 219
            +I   + S   S+   K+++GAL H+P  R+ NL   ++++    G +    +  ++K 
Sbjct: 126 VVIIPNKNSAKISSDALKTSAGALYHVPVCRVLNLKRVVRELKFQRGIRVYAATEKAEKF 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     A+I+G+E KG+  +    AT    +   G I++LNVS AAAV L+     
Sbjct: 186 YTGADLTLPTAIIMGSEDKGIDEELINIATDCIKIPQKGQIESLNVSAAAAVLLFEVVRQ 245

Query: 280 FA 281
             
Sbjct: 246 RG 247


>gi|50364903|ref|YP_053328.1| rRNA methylase [Mesoplasma florum L1]
 gi|50363459|gb|AAT75444.1| rRNA methylase [Mesoplasma florum L1]
          Length = 242

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 105/240 (43%), Gaps = 12/240 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V+  +      I ++  + +            + F +  V  + I+ +VG EA
Sbjct: 6   LIYGKHAVNEFIKKHPNLIKKIYISSDF-----KIDKSNNEFQILKVDLKKIENLVGNEA 60

Query: 110 VHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E             N       +L+++LD + DP+N GAI+RS+     D I+
Sbjct: 61  NHQGIVAEVKEFNYKPFGEALNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIV 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQ 222
                    ++ + K+++G +  +   +++NL++A++ +   GF       +S+   + +
Sbjct: 121 ILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQKNGFWIYSTHLNSESNDMRK 180

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               ++ A+++G E  G+     + +     +     I + N + A ++ LY   N+  K
Sbjct: 181 VDFANRTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVANYIGK 240


>gi|332299742|ref|YP_004441663.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176805|gb|AEE12495.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 247

 Score =  215 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 13/243 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           +   +YG+H ++ +L + S  I ++   K A+     +          PV  VP + +++
Sbjct: 3   KQKLIYGIHALNESLASHS-DIDKIYMKKGAVTGELLEIKRTARTQGVPVMEVPAERLNR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                  HQG+    +P+    L+++            +++LD V D  N GAI R+   
Sbjct: 62  FT--RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                I+  +R S S +A    +++GAL  IP  R  +L  A + +   G Q +G   D+
Sbjct: 120 AGVHAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       + +++G+E KG+     +  T    +   G I +LNVS A  + LY  
Sbjct: 180 TTNYTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEV 239

Query: 277 QNH 279
              
Sbjct: 240 VRQ 242


>gi|331083397|ref|ZP_08332509.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404090|gb|EGG83638.1| RNA methyltransferase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 269

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 111/264 (42%), Gaps = 8/264 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF--QLLATKNALARLDW 83
           ++   KK+Q   +K++   + +   + G+   S    +  +K++  Q  A K    R+  
Sbjct: 6   SNVQIKKVQQILKKAKVRREEQVFAVEGIKMFSEVPKSRLQKVYLSQSFAEKEECGRILQ 65

Query: 84  DANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLD 139
           +  +       V+ V  +    +       QG+            + +    + LLM+L+
Sbjct: 66  EKGISIEETAYVEIVDDKIFKNLSDT-VTPQGVLCLVKMENFTLSEILSGEENPLLMILE 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-A 198
            + DP N+G ILR+       G+I ++      +  + +S  G++  +P I ++++ D  
Sbjct: 125 DLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTMGSVYRMPIIYVNSIEDEV 184

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +   G  T     + +   ++E      A ++G EG GL     E A ++  + M G
Sbjct: 185 LPLLKEKGITTYAAHLEGRNDYDKECYTKGTAFLIGNEGNGLSEHLTERADTLIKIPMQG 244

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            +++LN + A+ + +Y       K
Sbjct: 245 KVESLNAAMASGILMYEAYRQRRK 268


>gi|225376828|ref|ZP_03754049.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
           16841]
 gi|225211324|gb|EEG93678.1| hypothetical protein ROSEINA2194_02470 [Roseburia inulinivorans DSM
           16841]
          Length = 284

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 104/256 (40%), Gaps = 8/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +    +K++  ++ E   + G          P   + Q+  +++  A  D   
Sbjct: 18  SNQQMKNLMLLMKKAKARNEQELFVVEGRKMFQEV---PEEWLKQVYVSESFFAENDKML 74

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDP 144
                +  + V       +   +   QG+            + ++ +   L++L+ + DP
Sbjct: 75  A---GYTYEIVSDSVFKAVSDTQ-TPQGILCLVRKPQYRLEELLKGADTHLLILESIQDP 130

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G +LR+       G++         +    +S  G++  +P+    +L + + ++ +
Sbjct: 131 GNLGTMLRTGEGAGISGVVMNHTTVDLFNPKTIRSTMGSIYRMPFFVTRDLAETICELKN 190

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G +T       K   ++       A ++G EG GL  +T + A +   + M G +++LN
Sbjct: 191 AGVKTYAAHLKGKMQYDEPDYTGATAFMIGNEGNGLSDETADLADTYIKIPMCGQVESLN 250

Query: 265 VSNAAAVALYITQNHF 280
            + +A++ +Y T    
Sbjct: 251 AAISASLLMYETNRQR 266


>gi|313665041|ref|YP_004046912.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii
           PG50]
 gi|312949507|gb|ADR24103.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma leachii
           PG50]
          Length = 244

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 103/240 (42%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          +  V    +D+++    
Sbjct: 5   LIYGKHVVYELLKKHKNMVKEIWV--KNLKLLNEFDLKNTKIKINVVSENKLDQLLKTNE 62

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  E         D +      +   L++VLD ++DP+N GAI+RS    + DGII
Sbjct: 63  PHQGIIAEIKDFNYTPFDELINDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGII 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222
              +     ++ + K++SG+   I   + +NL +A++ + + GF     + + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K  +I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 TQFANKTVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|15644487|ref|NP_229539.1| hypothetical protein TM1741 [Thermotoga maritima MSB8]
 gi|4982318|gb|AAD36806.1|AE001812_16 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 242

 Score =  215 bits (548), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 8/238 (3%)

Query: 49  LFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           + +YG   +  AL N     +  FQ +    +                     + +  + 
Sbjct: 1   MRVYGRKILEEALRNNVPIKKVFFQKMKNPGSYFLSLVKEVEKRGIKYSFESEERLKNLS 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           G +  HQG+  +       +++ +   +   L+++LD + DPHN+GAI+R++V    +GI
Sbjct: 61  GTKK-HQGVVFDIGEYRYSSVEEILEAKTPPLIVLLDQIQDPHNLGAIVRTSVGAGANGI 119

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  + K ++G +       ++NL   ++++   G  T     D   P+ +
Sbjct: 120 IIPKDKSVKVTETVVKVSAGTVFRARIAVVTNLARTIEELKEKGVWTYASDIDG-TPIYE 178

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E      A + G EG+G+R   +E    +  + M   I +LNVS +  V L+      
Sbjct: 179 EDFTFPTAFVFGNEGEGIRRLVREKCDRVVTIPMENDIDSLNVSVSVGVVLFEAVRQR 236


>gi|325335303|gb|ADZ11577.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 258

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 104/257 (40%), Gaps = 11/257 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHP 90
           M+      +  +  +  F++G+  V  A+       K+F     + ++          H 
Sbjct: 1   MKQDYTSHKKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYAELKALLAKHK 60

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143
                VP + +++   K   HQG+    + +   +++AV         +  L++LD + D
Sbjct: 61  IRPNYVPIEKLNRFTRK--NHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTD 118

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N GAI R+A     D II  ++ +   ++   K+++GAL ++   +  NL   +  + 
Sbjct: 119 VRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G      +  ++K +         AL++G E KG+  +    +     L + G  ++L
Sbjct: 179 QSGVSVFSATEKAEKLIYDIDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSL 238

Query: 264 NVSNAAAVALYITQNHF 280
           NVS A    LY      
Sbjct: 239 NVSVACGAILYEVVRQR 255


>gi|294784858|ref|ZP_06750146.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           3_1_27]
 gi|294486572|gb|EFG33934.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           3_1_27]
          Length = 234

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID     
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A ++  L+++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGVAVYISNYDYYKDFDEAYEELAEKDKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E  ++KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEENYSNKIILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
           PHSC20C1]
 gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
           PHSC20C1]
          Length = 345

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 120/263 (45%), Gaps = 15/263 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLD 82
           +    ++     Q     S  E+  + G ++V  AL    P+  ++  +AT+     R+ 
Sbjct: 73  DAPQQQRSTRPAQSRVAKSADESEMVTGRNSVLEALRAKIPAHTLY--MATRIEYDDRVK 130

Query: 83  WDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-------PTLDAVRNSQ 133
               L       V  V    +D++ G ++VHQGLAL+  P            ++A     
Sbjct: 131 EILKLATSRGIAVLEVMRPELDRLAGFDSVHQGLALKVPPYEYAHPMELLDKVEARGQVP 190

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           LL+ LD + DP N+GAI+RS  AF   G+I  +R S   +A   K+++GA    P    +
Sbjct: 191 LLVALDGITDPRNLGAIVRSVAAFGGQGVIVPQRRSVGMTASAWKTSAGAAARTPVAMAN 250

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMA 252
           NLT  +++    G   +GL  D    L    +  + + +++G+EGKGL     E   ++ 
Sbjct: 251 NLTQMIKEYKKRGVFVLGLDGDGDVSLPSLPLAKEPVLIVVGSEGKGLSRLVTENCDAIV 310

Query: 253 HLHMPGIIKALNVSNAAAVALYI 275
            + +    ++LN   AA+V LY 
Sbjct: 311 SIPISASTESLNAGIAASVTLYE 333


>gi|315652372|ref|ZP_07905361.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485346|gb|EFU75739.1| RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 251

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 14/243 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  A  +    + +L      K+            H   V  V    +D +  +
Sbjct: 6   VEGRNVVIEAFRSGK-TVDKLYIRDGLKDYAISTILREAKKHGTYVNFVSKDRLDGM-SE 63

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    A     +++ +            + +LD + DPHN+GAI+R+A      
Sbjct: 64  TGNHQGVIAIVAAYEYASVEDILEKARQNDEPPFVFILDGIEDPHNLGAIIRTANLCGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   +A +A++++GA+ + P  +++N+   ++++   G   +      +K +
Sbjct: 124 GVIIPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMKELKDAGMWFVCADMGGEK-M 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279
                   I LI+G EG G+    ++    +A + M G I +LN S A  V  Y   +  
Sbjct: 183 YNIDLTGSIGLIIGNEGDGVSESVKKNCDFIASIPMKGNIDSLNASVACGVLAYEIVRQR 242

Query: 280 FAK 282
            AK
Sbjct: 243 IAK 245


>gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 253

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 9/256 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
                + +   K+++   QK +H +Q     + G H V  AL      I  LL T   L+
Sbjct: 2   KEIQSKKNTFIKEIKKLTQK-KHRTQTNTYLIDGWHLVQEALQ-AKVPIKALLVTPRGLS 59

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
             +   +            + I  ++      QG+           L  +  +   ++LD
Sbjct: 60  EANGQLDDYQEESYLIT--EEIAAMLSDLPTPQGIFAVVEKQEQ-NLQTLTGN--WLILD 114

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +V DP N+G ++R+A A    G+   +  +   S  + +S  G+  H+P +  + +   L
Sbjct: 115 NVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPILEGA-IPPFL 173

Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +++ S G    G   +    P  +  K    A ILG EG+G+ P+         ++ + G
Sbjct: 174 KQLRSAGVTIYGTELNKEAVPYTELPKEQTAAFILGNEGQGVHPELLALTDKNVYIPIYG 233

Query: 259 IIKALNVSNAAAVALY 274
             ++LNV+ AA + +Y
Sbjct: 234 QAESLNVAIAAGILMY 249


>gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 264

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 5/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K + S  Q+ ++  +     + G+  V+         +  +L  ++  + L+ 
Sbjct: 11  SKDNKTIKHIISLQQR-KYRQKFGEYTVEGIRAVTDI--GKKDCLRSILIRESKRSELEP 67

Query: 84  DANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V     DKI       QG+       ++     +    L + LD V 
Sbjct: 68  LVQKGFTVSSVYVVQDSIFDKI-EHSVNGQGILGIAKKCVNDLHSFIVEDGLYVALDGVQ 126

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+AVA    GI   K      +    +S   AL +IP      L++    +
Sbjct: 127 DPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFEDVTLSEFYDFI 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                +T   S ++ KP        +  +ILG EG G+  +  E       + M G I++
Sbjct: 187 KDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEMCDQAITIPMYGDIES 246

Query: 263 LNVSNAAAVALYITQNHF 280
           LNVS AAA+ +Y  +   
Sbjct: 247 LNVSIAAALCMYKVREQI 264


>gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
 gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
          Length = 257

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 6/239 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           ++  K++    +KSR  +Q       G   V      P   + +L  ++    + + +  
Sbjct: 7   NQKVKELLQLQKKSRIRNQEGVFIAEGSRMVGE---TPKESLVRLYVSETYYKKHEEELK 63

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPH 145
             +  P   V   T+   V      QG+      +     +   + +  ++VLD++ DP 
Sbjct: 64  KYNRQP--EVLTDTVFAYVSDTKTPQGILAVVRQMEYTMEEITGKGNPHILVLDNLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I R+A A    GI+ +       +    +S  GA+  +P++ + ++ + +  +   
Sbjct: 122 NLGTIFRTAEAAGVTGILMSGDCVDIYNPKTIRSTMGAVYRMPFLYVEDMIEGIDNLKKN 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             +      D K   ++E      A ++G EG GLRP+  E A     + M G  ++LN
Sbjct: 182 NIRVYAAHLDGKNSYDKEDYCGGTAFLIGNEGNGLRPEVAEKADVWVRIPMEGQAESLN 240


>gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 320

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 24/291 (8%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H  K+ +  +        + +    +   +  + G + V   L   
Sbjct: 37  TPKAEDRVYH--KAHKRKVEQQRK-------ASGRHDRRNLHGSELVVGRNPVVECLRAK 87

Query: 65  --SRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +  ++    T N   RL     +       V  VP   +D++ G   +HQGL L    
Sbjct: 88  VSATALYVAEGTDN-DDRLTEAVRVAGDRAITVLEVPRIELDRMTG-NGMHQGLGLLVPE 145

Query: 121 LLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                +  +        ++ L++ LD++ DP N+GA++RS  AF   G++  +R S S +
Sbjct: 146 YQYVDVQDLIDRAHASSSTGLIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVT 205

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           AV  ++++G    +P  + +N+T AL++    G+Q +GL +     L+       + +++
Sbjct: 206 AVAWRTSAGTAARLPVAKATNMTRALKQFQKEGYQVVGLDAGGDHTLDTYDGTTPVVVVV 265

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
           G+EGKGL     ET  ++  + M   +++LN S AA V L  +  Q    K
Sbjct: 266 GSEGKGLSRLVSETCDTIMSIPMADNVESLNASVAAGVVLSEFARQRRAVK 316


>gi|332663829|ref|YP_004446617.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332332643|gb|AEE49744.1| RNA methyltransferase, TrmH family, group 3 [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 247

 Score =  215 bits (548), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 107/245 (43%), Gaps = 15/245 (6%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKI 104
           +  +YG H V  A+ +    + +++  +      + +       +  P + VP + ++K+
Sbjct: 6   SEIVYGRHPVVDAIKSGW-PVDKVVLQQGIRGEFEKEIRHLTKEYEVPFQVVPKERLNKL 64

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            G    HQG+    +P+    L+ +         + L+++LD + D  N GAI RSA  F
Sbjct: 65  AG--GNHQGVVAFISPIPFQRLEDILPSVFENGQNPLIVLLDGITDVRNFGAIARSAEVF 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++ + + S   +A   K+++GAL  IP  R  ++  A++ +   G +       + 
Sbjct: 123 GAHALVISSKKSAQVNAEAVKTSAGALTLIPVCREKSMVGAIELLKLSGVKVYVSDLAAT 182

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-- 275
             +        +AL++G+E +G+ P     A     +   G   +LN S AA + LY   
Sbjct: 183 ASIAALDWTIPVALVIGSESEGITPAVAALADDRFLIPQLGQTDSLNASVAAGIILYEAT 242

Query: 276 TQNHF 280
            Q H 
Sbjct: 243 RQRHL 247


>gi|257452951|ref|ZP_05618250.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|257466669|ref|ZP_05630980.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917823|ref|ZP_07914063.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059492|ref|ZP_07923977.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313685168|gb|EFS22003.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313691698|gb|EFS28533.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 237

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 110/232 (47%), Gaps = 16/232 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTV-PPQTIDKIVGKE 108
           + G++ V   L N  + I +L   K      L     L     +K     + I+      
Sbjct: 4   VIGINPVLEVLQNREKTIEKLEVYKGVRGEVLQKIQRLASERNIKIFYTNKKIE------ 57

Query: 109 AVHQGLALETAPL-LSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              QG  +           D +      ++  ++++LD + DP N GA++RSA  F  D 
Sbjct: 58  -NSQGFCIFLTDYDYYREFDEILENMARKSQSIILILDEIQDPRNFGALIRSAEVFGVDA 116

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  +R S   +  + K+++GA+E++P ++++NL++ ++K+    +   G + +++    
Sbjct: 117 IIIPERNSVRINETVVKTSTGAIEYVPIVKVTNLSNTIEKLKKIDYWVYGAAGEAESSSA 176

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +E    K+ L+LG EG GLR K +E    +  + M G I +LNVS A  + L
Sbjct: 177 EEQYPQKVVLVLGNEGTGLRKKVREYCDKLIKIPMRGKINSLNVSVAGGILL 228


>gi|327404233|ref|YP_004345071.1| TrmH family RNA methylase [Fluviicola taffensis DSM 16823]
 gi|327319741|gb|AEA44233.1| RNA methyltransferase, TrmH family, group 3 [Fluviicola taffensis
           DSM 16823]
          Length = 274

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 108/269 (40%), Gaps = 13/269 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            K  R  R     Q      R   +     +YG+  V  A+ N    I ++L  K     
Sbjct: 4   KKNDREERGGGFNQDKRNFERKPKEDPTDIIYGIRVVIEAIKNEVE-INKILIQKGIDKD 62

Query: 81  LDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------R 130
           L  +         + ++ VP + ++K+      HQG+   T+P+    ++ +        
Sbjct: 63  LFEELRTVLTGKEYQLQFVPVEKLNKLTVN--NHQGVIAFTSPVEYKNIEELCDQWLSEG 120

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
               ++VLD + D  N G I R+A     D I+   + S   SA   K+++GAL  IP  
Sbjct: 121 KEPCILVLDRITDVRNFGGIARTAACMGVDAILVPSKGSALVSADAIKTSAGALHSIPVC 180

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +   L ++L  +   GFQ +  +  SK   E        A+I+G+E  G+     + +  
Sbjct: 181 KTDLLKNSLFYLQQSGFQLVSCTEKSKVSAENYSFFGPTAIIVGSEEDGISHDLLKMSDV 240

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M G I +LNV  A  + LY     
Sbjct: 241 RLSIPMAGDISSLNVGVATGMILYERLKQ 269


>gi|42519503|ref|NP_965433.1| hypothetical protein LJ1627 [Lactobacillus johnsonii NCC 533]
 gi|41583791|gb|AAS09399.1| hypothetical protein LJ_1627 [Lactobacillus johnsonii NCC 533]
 gi|329667742|gb|AEB93690.1| rRNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 253

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 114/257 (44%), Gaps = 12/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL +    ++ +L T  AL +LD   
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKSHENYLY-VLGTAEALKKLDTTY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     ++      I + +      Q + +   P+  P   +    +  +VLD++ DP 
Sbjct: 66  KLKDNKVIQITD--AIAQHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  I+   + +A+      
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNP-ILEAISSFKEN 180

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G        D + K L       ++AL++G E  G   +  ETA    ++ + G  ++LN
Sbjct: 181 GLPVYVSILDKTAKSLNNCAPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLN 240

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 241 AAVAAGIMIY----HFS 253


>gi|258655031|ref|YP_003204187.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
           multipartita DSM 44233]
 gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
           multipartita DSM 44233]
          Length = 326

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 114/256 (44%), Gaps = 17/256 (6%)

Query: 40  SRHTSQPENLF---LYGVHTVSAALNN--PSRKIFQL--LATKNALARLDWDANLPHPFP 92
           SR T++P       + G + V  AL    P+  ++    LAT   +A     A      P
Sbjct: 65  SRPTTRPRGELPETVVGRNPVVEALRAGVPATALYVAGGLATDERIAEAITGAA-ERGIP 123

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPH 145
              V    +D++ G  A+HQG+AL   P      + +         + L++ +D V DP 
Sbjct: 124 QLDVSRPELDRLTG-NAIHQGVALVVPPYQYAHPEDLLSRARDSGRAALIVAVDGVTDPR 182

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+RSA AF   G++  +R S   +A   ++++G    +   R +NL   L+   + 
Sbjct: 183 NLGAIVRSAAAFGAHGVVVPERRSAGMTASAWRTSAGTAARLRVARCTNLVRTLKDYAAQ 242

Query: 206 GFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G    GL +D     +  E+    + L++G+EG+GL   T+        + M   +++LN
Sbjct: 243 GLMIAGLDADGTTDTDSFELATSPLVLVVGSEGRGLARLTRTVCDVTVSIPMARSVESLN 302

Query: 265 VSNAAAVALYITQNHF 280
            S AA V L       
Sbjct: 303 ASVAAGVVLAEVARRR 318


>gi|58697096|ref|ZP_00372541.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila simulans]
 gi|58536620|gb|EAL59943.1| RNA methyltransferase, TrmH family, group 3 [Wolbachia endosymbiont
           of Drosophila simulans]
          Length = 236

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGL 114
            +AL N +R+  +LLA +N       +           V+ V  + ++ ++ K A HQG+
Sbjct: 1   MSALTNQNRRCIELLAPENFYREHKKEIRQCVDSKGIKVRLVESKILNDVLPKGANHQGI 60

Query: 115 ALETAPLLS-----PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           AL  AP+L         ++  +S  +++LD V D HNIG+ILR++  F+ D ++    +S
Sbjct: 61  ALNVAPILYNLSIEEIAESSNDSSTIVILDQVTDTHNIGSILRTSACFNVDALVLPHNHS 120

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDK 228
           PSE+A +AK+ASGAL+ +P I ++N+   +Q +   G+   G   ++K+ +++      K
Sbjct: 121 PSENASIAKAASGALDIVPLIYVTNIVKTMQYLKKVGYWCYGFDCNTKENIDEIKSFEKK 180

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +I G+E KG+R   +E    +  + M   I +LNVSNAAA+ LY
Sbjct: 181 RVIIFGSEEKGVRRLVKENCDYLLKIPMSNAINSLNVSNAAAIGLY 226


>gi|189502510|ref|YP_001958227.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497951|gb|ACE06498.1| hypothetical protein Aasi_1164 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 246

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 11/240 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G   V  A+       KIF    TKNA  +  ++A      P   VP   ++K+V   
Sbjct: 7   IFGSKAVLEAILAGKTIDKIFIDKDTKNADYQSIFNAIRYKQIPCSRVPVAKLNKLVP-- 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+   TL  +           L+++LD V D  N+GAI+R+AV      
Sbjct: 65  LNHQGIVALLSPVPLVTLSHIVQDTYEKGELPLIIILDGVTDVGNLGAIVRTAVCVGAHA 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  K+ S S  +   K+++GAL H+P  R +NL  ++  + + G Q I     ++  + 
Sbjct: 125 LVLPKQGSASLGSGAMKTSAGALAHLPICREANLQASINYLQNSGLQVIACHEKTQTSIY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q       A++LG+E KG++P+        A + M G I +LNVS AAA+ LY +     
Sbjct: 185 QVKLTVPTAILLGSEDKGIQPQLLNKVDVQASIPMVGPISSLNVSVAAAIILYESFRQRN 244


>gi|332885426|gb|EGK05675.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas mossii
           DSM 22836]
          Length = 246

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 105/244 (43%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102
            E   ++G+  +  A+      I +++  +     L++  +         V+ VP + +D
Sbjct: 2   KEKEMIFGIRAIIEAIEAGKE-IDKVIVKRELQGDLSKELFALLKSRDIAVQRVPNERLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           +   K   HQG+    + +    ++ +            ++VLD + D  N GAI R+  
Sbjct: 61  RFTRK--NHQGVIAFLSAITYEHIEDIIPFLYEQGKDPFILVLDGITDVRNFGAIARTCE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               D I+   + S + +A   K+++GAL  IP  +  +LT+A+Q + + G + +  +  
Sbjct: 119 VAGVDAIVIPAKGSVTVNADAIKTSAGALLKIPVCKEQSLTNAIQFLKNSGIKVVAATER 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                     +  IA ++GAE  G+       A ++  +   G I +LNVS AA V +Y 
Sbjct: 179 GADDYTAVDYSGPIAFVMGAEDTGVSNDNLRIADNLVKIPQFGTIGSLNVSVAAGVLIYE 238

Query: 276 TQNH 279
               
Sbjct: 239 VIRQ 242


>gi|89891665|ref|ZP_01203168.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium BBFL7]
 gi|89516000|gb|EAS18664.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium BBFL7]
          Length = 244

 Score =  214 bits (547), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            +  ++YG+  +  A+ +     K++ L   +  L          H      VP + +DK
Sbjct: 2   EKTTYIYGLRAIIEAIESGQNLGKVYLLREAEGVLMGQLKTLVTKHKITNSFVPVEKLDK 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           I      HQG     +P+   +L+ +       + ++ ++LD V D  N GAI+R+A   
Sbjct: 62  ISS-HGNHQGAVASISPVDFASLEDILEQRNVESKEIYLLLDGVTDVRNFGAIIRTAECT 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               II  +  S   +    K+++GA+ +IP  ++S++ DA+  M ++G  TIG +  S 
Sbjct: 121 GVSAIIIGESGSAPINPATIKTSAGAVFNIPICKVSHIKDAVFLMKAYGITTIGATEKST 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +     N  IAL++G+E +G+ P T +       L M G I +LNVS A    LY   
Sbjct: 181 KLVYDIDLNQSIALVMGSEERGINPSTLKVIDEPIKLPMKGDIASLNVSVACGAILYEIV 240

Query: 278 NH 279
             
Sbjct: 241 RQ 242


>gi|294783389|ref|ZP_06748713.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           1_1_41FAA]
 gi|294480267|gb|EFG28044.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium sp.
           1_1_41FAA]
          Length = 234

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + GV+ V+ AL N  + I +L      K    +   +        +     + ID     
Sbjct: 4   IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A ++  ++++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGVAIYISNFDYYKDFDEAYEELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LILIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E   +KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYPNKIVLVLGNEGSGIRKKVREHCDKLVKIPMFGQINSLNVSVASGILL 228


>gi|34541459|ref|NP_905938.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|34397776|gb|AAQ66837.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
          Length = 249

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 11/239 (4%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++G+H++S A        KIF     K           +    PV  VP + +D++  K
Sbjct: 6   MIFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTSK 65

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    + +    LD +         +  L++LD + D  N GAI R+A     D
Sbjct: 66  --NHQGVVAILSAIEYTRLDQLMPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S S      K+++GAL  IP  R++++  A++ +  +G + +  S  +    
Sbjct: 124 AIIIPERGSVSVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLY 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   + +++GAE  G  P T   A  +  +   G I +LNVS AA + +Y     
Sbjct: 184 TDVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQ 242


>gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
 gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
 gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
 gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
          Length = 259

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 9/261 (3%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           D       + +   K+++   QK +H +Q  +  + G H V  AL +    I  LL T  
Sbjct: 5   DKMKEIQSKKNTFIKEIKKLTQK-KHRTQTNSYLIDGWHLVQEAL-HAQVPIKALLVTPR 62

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            L+  +   +            + I  ++      QG+           L  +  +   +
Sbjct: 63  GLSEANGQLDDYQEESYLIT--EEIAAMLSDLPTPQGIFAVVEKQEQD-LQTLTGN--WL 117

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD+V DP N+G ++R+A A    G+   +  +   S  + +S  G+  H+P +  + + 
Sbjct: 118 ILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQGSNYHLPIVEGA-IP 176

Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             L+++ + G    G   +    P  +  K    A ILG EG+G+  +         ++ 
Sbjct: 177 PFLKQLQAAGVAIYGTELNKEAVPYTELPKGQAAAFILGNEGQGVNQELLALTDKNLYIP 236

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           + G  ++LNV+ AA + +Y  
Sbjct: 237 IYGQAESLNVAIAAGILMYFA 257


>gi|262066778|ref|ZP_06026390.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379581|gb|EFE87099.1| RNA methyltransferase, TrmH family, group 3 [Fusobacterium
           periodonticum ATCC 33693]
          Length = 234

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + GV+ V+ AL N  + I +L      K    +   +        +     + ID     
Sbjct: 4   IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A +N  ++++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGVAVYISNFDYYKDFDEAYEELASKNKSVVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LILIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E   +KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYPNKIVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228


>gi|269837622|ref|YP_003319850.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786885|gb|ACZ39028.1| RNA methyltransferase, TrmH family, group 3 [Sphaerobacter
           thermophilus DSM 20745]
          Length = 252

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 9/248 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPP 98
                    LYG + V  AL          +A  +A          A      PVK +P 
Sbjct: 2   RERPRGTELLYGRNAVMEALRGRRSLRRLFVAEGSARQPRVAAIIQAAEKRRLPVKHLPQ 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAV 155
           + + +++  +  HQG+ALET P      D +      + ++ LDH+ DP N+  ++R+A 
Sbjct: 62  RDLAEML-PDVNHQGVALETGPYPYVGFDDLLRQAEGRPILALDHIQDPQNLATLMRTAE 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SS 214
           A    G++   R +   +  +  +++GA+EH+    ++NL  AL++    G+  + L + 
Sbjct: 121 AVGVGGLLLPDRRAAGVTPAVVNASAGAVEHLRVALVANLGRALEECQEAGYWVVALEAG 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + L      +   L++G+EGKG+ P     A     L M G + +LN + A ++ALY
Sbjct: 181 PEAQTLFTADLPEPTVLVVGSEGKGMAPTLLRRADVQVALPMQGRVDSLNAAVAGSIALY 240

Query: 275 I-TQNHFA 281
              +   A
Sbjct: 241 ELLRRRLA 248


>gi|312127730|ref|YP_003992604.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777749|gb|ADQ07235.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 270

 Score =  214 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 118/289 (40%), Gaps = 34/289 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           +  IS +++E I  LK  H  K R   R +                      G+  V  A
Sbjct: 6   VEFISSRENECIKRLKKLHDKKYREEFRSF-------------------ITEGLKLVREA 46

Query: 61  LNNPSRKIFQLLATKNAL----------ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           ++     I  ++ +++A            RL  D  +     V    P  + + +   + 
Sbjct: 47  IDYQIECINLVIFSQHAKDRYQEFYWECKRLLEDGKIERVIEV----PDKLFEYITTTST 102

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            QG+  E    +   ++ ++N + ++V + + DP N+G ++R A AF  D ++TTK    
Sbjct: 103 PQGILAECN-FVDKGINFIKNLRRVVVANKLQDPGNLGTLIRCADAFGFDAVVTTKGTVD 161

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +    ++  G+L H+  +R +     ++ +    F     +      + + + + +  
Sbjct: 162 IYNPKTIRATMGSLFHLQIMREAEEGKLIKILKDNSFAVYVATPYGDIEISKIVPDKRFC 221

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +++G E +G+     + AT    + M G  ++LN + AA++ LY  +  
Sbjct: 222 VVIGNESEGVSDSFAKVATRKIKIPMAGKAESLNAAVAASIVLYELRKR 270


>gi|319790074|ref|YP_004151707.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
 gi|317114576|gb|ADU97066.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
          Length = 239

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 11/241 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGK 107
           + +YGV+ V+ AL      I ++   KN   R    +        V     Q + ++  K
Sbjct: 1   MVIYGVNPVAEALRAGY-PIMKIFVEKNFKDREKVLETARQAGIKVVKTTKQKLTELA-K 58

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+    +P+     +     AV  +  L+ LD + DPHN+GAI RSA AF   GI
Sbjct: 59  TTKHQGIVALVSPVEPKPFEELAQKAVEENGYLLFLDRIEDPHNLGAIFRSADAFKVTGI 118

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +  S + +  +AK+++GAL ++P+  +++   AL++    G   +GL +   KPL +
Sbjct: 119 VIPRDRSVTVTETVAKTSTGALFYVPFAVVNSFVTALREFKEMGGWLVGLEA-GGKPLSK 177

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--QNHF 280
                 + L+ G+EG+GL   T +    +  + M G + +LNVSNA A+ LY    Q + 
Sbjct: 178 FEFPFPLGLVAGSEGRGLSRSTVKQLDELVEIEMGGHVNSLNVSNAVAIGLYKVFCQRYI 237

Query: 281 A 281
            
Sbjct: 238 N 238


>gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
 gi|158449339|gb|EDP26334.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
          Length = 272

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 102/260 (39%), Gaps = 10/260 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LD 82
           ++   K +   N+ SR   + +   + G+         P   + ++  +++A A     D
Sbjct: 12  SNPKVKMLNKLNKDSRLRRERDVFIVEGIRMFREI---PVDSVDEIYMSESAYAEYCDED 68

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--LMVLDH 140
               L +   V  +        V +    QG             D   ++     ++LD 
Sbjct: 69  DLQELYNAAEVTVMSDSVFAG-VSQTKTPQGCMAVVRCFHYEMTDIAGSTDTATYLILDT 127

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I RSA A    G+I         +  + +S  GA+  +P+++  +L   + 
Sbjct: 128 IQDPGNMGTIFRSAEAAGITGVIIGPGSCDPYNPKVVRSTMGAIFRVPFVQSDDLIYTID 187

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   G    G   D ++ L      DKIA ++G EG GL     +TA  +  + M G +
Sbjct: 188 ALKRKGVLIYGAHLDGEE-LYDTEFPDKIAFLIGNEGNGLSKAVSDTADRLLRIPMEGKV 246

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN + +A +  Y      
Sbjct: 247 ESLNAAISATLLSYEAMRQR 266


>gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec]
 gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec]
          Length = 386

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 11/241 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP--PQ 99
                +  + G + V  AL          +    +   R+     L     +  V     
Sbjct: 134 RRVETDELVVGRNAVVEALRAGVPATTLYIAGGLDFDERIADARRLAGRAGLAVVDIGRF 193

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +D++ G  A HQGLAL   P      D V          L++ LD V DP N+GA++RS
Sbjct: 194 ELDRLCGT-APHQGLALSVPPFEYAHPDDVLAAAQAAAPGLVVALDGVTDPRNLGAVVRS 252

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF   G++  +R +   +A   K+++GA   +P  R  NLT  L+     G   +GL+
Sbjct: 253 AAAFGASGVVVPERRAAGVTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLA 312

Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +D +  L++ ++  D + L++G+EGKGL     E       + M G +++LN   A  +A
Sbjct: 313 ADGEVSLDELQVATDPLVLVIGSEGKGLSRLVGECCDLRVRIPMAGQVESLNAGVATGIA 372

Query: 273 L 273
           L
Sbjct: 373 L 373


>gi|254518665|ref|ZP_05130721.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226912414|gb|EEH97615.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 260

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 103/258 (39%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-- 81
            + +  +K ++   ++ R   +     L G   +  A    + +I  ++ ++    +L  
Sbjct: 6   SKENNFFKSIKKLKER-RFRQKEGKFILEGFRLIEEA-AKANMEIEYIILSQGNEEKLYN 63

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                + +   +         +I   E   QG+        +  +    +    +V D V
Sbjct: 64  SSLKEVINDDKIYVFSSSLFLQISSTE-HPQGVIAVVK---NKKMTIDLDGGFFLVCDKV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+  A   DGII TK      +    +S  G++ ++P          ++K
Sbjct: 120 QDPGNLGTIIRTGHAAGVDGIILTKGTVDIYNDKTIRSTMGSIFYVPIFYDDEDFSIIKK 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G   +  S +  K   +E    KI L +G EG G+  +  E A+    + MPG  +
Sbjct: 180 LKDNGVALVTTSLEESKNFFEENLKGKIMLAVGNEGNGISNELFELASKKVKIPMPGGAE 239

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A ++ L+     
Sbjct: 240 SLNVAIATSIILFEKVRQ 257


>gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 264

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 5/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K + S  Q+ ++  +     + G+  V+         +  +L  ++  + L+ 
Sbjct: 11  SKDNKTIKHIISLQQR-KYRQKFGEYTVEGIRAVTDI--GKKDFLRSILIRESKRSELEP 67

Query: 84  DANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     V  V     DKI       QG+       ++     +    L + LD V 
Sbjct: 68  LVQKGFTVSSVYVVQDPIFDKI-EHSVNGQGILGIAKKCVNDLHSLIVEDGLYVALDGVQ 126

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+AVA    GI   K      +    +S   AL +IP      L++    +
Sbjct: 127 DPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSALCNIPIFEDVTLSEFYDFI 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                +T   S ++ KP        +  +ILG EG G+  +  E       + M G I++
Sbjct: 187 KDNTIKTYVTSLENAKPYHTISYPKRTMIILGNEGNGVSREIIEMCDQAITIPMYGDIES 246

Query: 263 LNVSNAAAVALYITQNHF 280
           LNVS AAA+ +Y  +   
Sbjct: 247 LNVSIAAALCMYKVREQI 264


>gi|256027521|ref|ZP_05441355.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289765481|ref|ZP_06524859.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289717036|gb|EFD81048.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 234

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G++ V+ AL N  + I +L      K    +   D        +     + ID     
Sbjct: 4   IIGINPVTEALLNKEKNIEKLELYNGLKGETVQKLKDLASKRNIKIFY-TGKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A +   L+++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGVAVYISNYDYYKDFDEAYEELAGKAKSLVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LIIIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E   +K+ L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYANKVILVLGNEGSGIRKKVREHCDKLIKIPMYGQINSLNVSVASGILL 228


>gi|257792139|ref|YP_003182745.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
           2243]
 gi|257476036|gb|ACV56356.1| RNA methyltransferase, TrmH family, group 3 [Eggerthella lenta DSM
           2243]
          Length = 248

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 19/248 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F+ G   V  AL      I  +L      ++ L              V+ VP + +D  
Sbjct: 3   DFIEGKRPVIEALRTGV-PIKSILMADNMQRDGLIEDILRKAKRAGATVEMVPRKVLDGK 61

Query: 105 VGKEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
             + + HQG+  + AP               + +      L+++LDH+ D  N+GA+ RS
Sbjct: 62  SDRGS-HQGVMAKAAPFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GI+   + S    A   KS++GA+ H+P  ++SNL   + ++   GF   G +
Sbjct: 121 AEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGAT 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +K  + +     KIAL++G E +G+     E    +  L + G + +LNV+ AA   +
Sbjct: 181 EHAKDLIWKSNLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACM 240

Query: 274 YI--TQNH 279
           Y    QN 
Sbjct: 241 YEWLRQNQ 248


>gi|229825756|ref|ZP_04451825.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
           49176]
 gi|229790319|gb|EEP26433.1| hypothetical protein GCWU000182_01119 [Abiotrophia defectiva ATCC
           49176]
          Length = 279

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 118/300 (39%), Gaps = 45/300 (15%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS K +++I  +                  +S  +K     +     + G+  V  A
Sbjct: 1   MEIISSKDNKRIKYI------------------RSLLEKGNIRKKNHQFVVEGIKLVDEA 42

Query: 61  LNNPSRKIFQLLATKNALARL------------DWDANL----PHPFPVKTVPPQTIDKI 104
           L     K+ +++  ++    L            + D N+         +  V       +
Sbjct: 43  LEYG--KVLEVVCAESLYNELISGDLSGNRLLAENDKNITNYVKKGSSLLVVSDTVFKSM 100

Query: 105 VGKEAVHQGLALETAPLLSPTLDA-------VRNSQL-LMVLDHVNDPHNIGAILRSAVA 156
             +    QG+           LD         +N ++ L+VL+   DP N+G I+R+A A
Sbjct: 101 -SETKTPQGILAVAEMPDYRLLDKGFLEQAYTKNGKIKLLVLEDTADPGNLGTIMRTAEA 159

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G+I  K      +  + +S  G++  +P+  + +L + ++++   G          
Sbjct: 160 AGVTGVIMGKGTVDIFNPKVVRSTMGSIFRLPFTYVEDLKETIKELKKSGISFYATHLKG 219

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +K  +    + + A+I+G E +GL  +  + A +   + M G +++LN + AAA+ +Y  
Sbjct: 220 EKSYKDIKYSGRSAIIVGNEARGLSDEVADLADTYVLIPMQGKVESLNAAVAAALMMYEV 279


>gi|256384318|gb|ACU78888.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|256385151|gb|ACU79720.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
           subsp. capri str. GM12]
 gi|296455808|gb|ADH22043.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma
           mycoides JCVI-syn1.0]
          Length = 244

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 104/240 (43%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          V  V    +D+++  + 
Sbjct: 5   LIYGKHVVFELLKKHQNMVKEIWVKD--LKILNEFDLKNTKIKVNVVSENKLDQLLETQT 62

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  +         + +      +   L+++LD ++DP+N GAI+RS    + DGII
Sbjct: 63  QHQGIIAQIKDYNYTPFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGII 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222
              +     ++ + K++SG+   I   + +NL +A++ + +  F     + + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNDFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K A+I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNVYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|256833281|ref|YP_003162008.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
           DSM 20603]
 gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
           DSM 20603]
          Length = 326

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/273 (24%), Positives = 124/273 (45%), Gaps = 15/273 (5%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPEN---LFLYGVHTVSAALNN--PSRKIFQL-L 72
           H A  R+  R+  +        R T++  +     + G + +  AL +  P+ +++    
Sbjct: 46  HPAGKRKEAREKLEAAQEKHAQRRTNRSGSRAVEVIAGRNAIVEALRSDMPADRLYVASR 105

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--- 129
              +   +   +        V       +D++    +VHQG+A+         +D +   
Sbjct: 106 LDHDDRTKEILEIATERGIAVVEATRPELDELTD-GSVHQGVAMGVPAYEYLEVDDLLDA 164

Query: 130 ----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                 + LL+ LD V DP N+GAILR+  AF   G+I  +R +   +A   K ++GA  
Sbjct: 165 AASKGQAPLLIALDSVTDPRNLGAILRAGGAFGAHGVIVPERRAAGMTASAWKVSAGAAA 224

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
            +P  R++NL  +L+ +   G   +GL  D+   +       D + L++G+EGKGL    
Sbjct: 225 RVPVARVTNLVRSLEALKKSGCFVVGLDGDADSSVRDLPFAADPLVLVVGSEGKGLSRLV 284

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +ET  ++A + +   +++LN + AA + LY   
Sbjct: 285 RETCDAIAAIPISTTVESLNAAVAAGITLYEVA 317


>gi|256374514|ref|YP_003098174.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
 gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
          Length = 321

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 20/292 (6%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQS------FNQKSRHTSQPENLFLYGVHTVSAA 60
           +KS+ +     +  A+ R NH  Y+K  +        Q+ R  +      + G + V   
Sbjct: 27  QKSKGLQGKGPTPKAQDRPNHPAYRKANAAAKANAVRQQRRKAADAAPETVAGRNPVVEC 86

Query: 61  LNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L    P+  ++  L   +A  R+     L       V  V    +D+I G  A+HQGL L
Sbjct: 87  LRAGIPATALYVALGI-DADDRVAEAVQLAASRGISVLEVQRGELDRITG-GAMHQGLGL 144

Query: 117 ETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +  P        +           LL+ LD V DP N+GA++RSA AF   G++  +R S
Sbjct: 145 QVPPYEYAEPRDLLRAAKESGRPPLLVALDGVTDPRNLGAVVRSAAAFGAHGVVLPQRRS 204

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDK 228
            S +AV  ++++G    +P    +NLT  L++    G   IGL +         ++    
Sbjct: 205 ASMTAVAWRTSAGTAARLPIAVATNLTRQLREWAEAGLMVIGLDADGDVDVDGLDLATGP 264

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +++G+EG+GL    +ET      + M   +++LN S AA V L       
Sbjct: 265 LVVVVGSEGRGLSRLVRETCDQTVSIPMASNVESLNASVAAGVVLAEVARRR 316


>gi|296533966|ref|ZP_06896485.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296265710|gb|EFH11816.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 250

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/248 (35%), Positives = 131/248 (52%), Gaps = 3/248 (1%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93
           Q   +  R  + P  L+LYG+HTV+AAL NP R++ +LL T  A A L      P     
Sbjct: 1   QDAGRAPREATPPNTLWLYGLHTVAAALANPRRRLKRLLLTAEAEAALAEKLPRPWKLQA 60

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAIL 151
           + V        + ++AVHQG AL   PL    L+    ++   +++LD V DP N+GAIL
Sbjct: 61  ERVERARFQTFLTEDAVHQGAALLVEPLPPVALEDALEKSRGTVLLLDQVTDPRNVGAIL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA AF    ++   R +P E+  +A++A GAL+ +P +R  NL   +  +   G+  +G
Sbjct: 121 RSAAAFGAAAVVMQDRNAPPETGAMARAAVGALDTVPVVREVNLARTITVLQKAGYWVMG 180

Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           L   +K  L      D   AL+LGAE  GLR   +ET   +  L +   +++LNVS AAA
Sbjct: 181 LDGTAKTELAAAKPTDRPAALVLGAEDSGLRRLQRETCDELVKLPIRPEMESLNVSVAAA 240

Query: 271 VALYITQN 278
           +ALY    
Sbjct: 241 IALYELSR 248


>gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
           27678]
 gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
 gi|171277540|gb|EDT45201.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
           27678]
 gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
          Length = 329

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/285 (25%), Positives = 124/285 (43%), Gaps = 30/285 (10%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHT----SQPENLFLYGVHTVSAALNN--PSRKIFQL- 71
           H A   +   D +KM      +R      +   +  + G + V  AL    P+  ++   
Sbjct: 34  HKAYKAKKVADRRKMADPRLAARRRVAKFASESDDLVIGRNAVLEALRCGVPASTLYIAA 93

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
               +   R        H   +       +D+I  + + HQG+ ++  P    +L  +  
Sbjct: 94  RIEHDDRTREIVRLAGIHGLHLMEADRLEMDRIA-RSSNHQGIVMKAQPFQYSSLAELVE 152

Query: 132 S---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                                  L + LD V DP N+GA++RSA AF  +G+I  +R S 
Sbjct: 153 RADKKSRAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSA 212

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKI 229
           S +A   K ++GA  H+P  R+ NLT A++ +   G+ +IGL       + E   + D +
Sbjct: 213 SVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSIGLDGGGDALVGETGFETDPL 272

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++LG+EG GL    + T   +A + M  ++++LN S AA + LY
Sbjct: 273 VVVLGSEGNGLSRLVRSTCDVIAGIPMSSMVESLNASVAAGITLY 317


>gi|315654540|ref|ZP_07907446.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315491004|gb|EFU80623.1| RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 325

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 19/261 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDAN 86
            +  +   + R  +  ++  ++G + V  A       + +L  +    K+          
Sbjct: 60  TQRAAARDRYRPNTAADSEIIFGRNPVVEA-AAAGVPLKRLFVSASLMKDERLSKVVQRG 118

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNSQL 134
                 ++   P  +D+I      HQG+A E A      +  +             +  L
Sbjct: 119 AASGAKLQECSPADLDRITA-GGTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPSHPPL 177

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VLD V DPHN+GA LRSA AF  DG+I  +  S S +A + K ++GA   +P  +  N
Sbjct: 178 LIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARN 237

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           LT ALQ++ + G   IGL       L +  + +  + ++ G+EGKG+    +ET   +  
Sbjct: 238 LTHALQQLQAEGAFAIGLDGGGDVDLPDLTLADQPLVVVTGSEGKGISRLVRETCDQIVS 297

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + +   +++LN + A  +ALY
Sbjct: 298 IPIDKRMESLNAAVATGIALY 318


>gi|237739549|ref|ZP_04570030.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423157|gb|EEO38204.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 234

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + GV+ V+ AL N  + I +L      K    +   +        +     + ID     
Sbjct: 4   IIGVNPVTEALLNKEKNIEKLELYNGLKGETVQKLKELASKRNIKIFY-TNKKID----- 57

Query: 108 EAVHQGLALETAPL-LSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG+A+  +        D      A ++  ++++LD + DP N GAI+RSA  F  D
Sbjct: 58  --NSQGIAVYISNFDYYKDFDEAYEELASKDKSVVLILDEIQDPRNFGAIIRSAEVFKVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+  +R S   +  + K+++GA+E++   +++NL+D + K+    +   G + ++    
Sbjct: 116 LILIPERNSVRINETVVKTSTGAIEYVNISKVTNLSDTINKLKKLDYWVYGAAGEASINY 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +E   +KI L+LG EG G+R K +E    +  + M G I +LNVS A+ + L
Sbjct: 176 NEEDYPNKIVLVLGNEGSGIRKKVREHCDKLIKIPMFGQINSLNVSVASGILL 228


>gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
 gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
          Length = 378

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 8/197 (4%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVN 142
              V+ V    + ++ G  AVHQG+ L+TA       P L      +    LLM LD + 
Sbjct: 18  GVLVEEVTWARLGQLTG-GAVHQGIVLQTAAAETLDLPSLIEGCRGIGEPPLLMALDGIT 76

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHN+GAI RSA A    G++  +R S   +  +AK A+GALEH+P  R+ NL  AL  +
Sbjct: 77  DPHNLGAIARSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRALDSL 136

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G++ IGL+S+    LEQ      + ++ G+E  GL   T++    +  + + G   +
Sbjct: 137 KQEGYRVIGLASEGSVSLEQADLEGPLVIVTGSEADGLAMLTRKHCDQLVSIPLRGATPS 196

Query: 263 LNVSNAAAVALYITQNH 279
           LN S A A+ LY     
Sbjct: 197 LNASVATALLLYEVARR 213


>gi|291547784|emb|CBL20892.1| rRNA methylases [Ruminococcus sp. SR1/5]
          Length = 258

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 107/257 (41%), Gaps = 8/257 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +   NQK++   +       G      A   P   + Q+  ++  ++R     
Sbjct: 6   SNAKIKNVMQLNQKAKARREQGLFVAEGRKMFLEA---PESWVSQVFVSE-TVSRDGELM 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVND 143
           +    +P + V      ++       QG+ L    L S + + V    + L+MVL+ + D
Sbjct: 62  SQAEKYPCEIVKDSVFRQMCDT-KTPQGI-LTVLKLPSWSEEEVLAGKNPLVMVLEDLQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR+       G+  TK      +  + +S  G++  +P++ + ++    +K+ 
Sbjct: 120 PGNAGTILRTGEGAGVSGVFLTKTCVDITNPKVIRSTMGSIYRMPFLYVEDVVSLEKKLK 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G ++       +   +QE      A  +G EGKGL  +  E A  +  + M G +++L
Sbjct: 180 EKGIRSFAAHLKGENSYDQESYKGGTAFFIGNEGKGLTDQAAEAADCLIRIPMCGKVESL 239

Query: 264 NVSNAAAVALYITQNHF 280
           N + A+ + +Y      
Sbjct: 240 NAAMASGILMYEAARQR 256


>gi|227889545|ref|ZP_04007350.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
 gi|227850023|gb|EEJ60109.1| RNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
          Length = 253

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 114/257 (44%), Gaps = 12/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL +    ++ +L T  AL +LD   
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEDALKSHENYLY-VLGTAEALKKLDASY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     ++      I + +      Q + +   P+  P   +    +  +VLD++ DP 
Sbjct: 66  KLKDDKVIQITD--AISQHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  I+   + +A+      
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIIQNP-ILEAISSFKEN 180

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G        D + K L       ++AL++G E  G   +  ETA    ++ + G  ++LN
Sbjct: 181 GLPVYVSILDKTAKSLNNCTPVPQLALVIGNEAHGASKEVIETADKKIYIPIKGKAESLN 240

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 241 AAVAAGIMIY----HFS 253


>gi|228471684|ref|ZP_04056457.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276837|gb|EEK15532.1| RNA methyltransferase, TrmH family, group 3 [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 246

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 109/240 (45%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           ++G+  V  A+    + I ++   K     L  + N        P   VP + + ++   
Sbjct: 6   IFGLRPVIEAIE-AGKTIDKIFIQKGLSGTLFTELNTLISQQKLPCSYVPVEKLQRLT-- 62

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    +P+    L+ +           LL++LDH++D  NIGAI+R+A      
Sbjct: 63  RGNHQGVVALLSPVEFVPLEELVLSTIESGKVPLLLILDHLSDVRNIGAIIRTAECTGVS 122

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+ S S    + K+++GA+ +IP  ++ NL D +  +   G + IG +  +   L
Sbjct: 123 GIILPKQGSASIGEDMVKTSAGAIFNIPLCKVDNLIDTIYYLQGSGIKVIGATEKASSLL 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q    + +A+++GAE  G+     +     A L + G I +LNVS A    LY      
Sbjct: 183 YQLNLTEPLAIVMGAEDTGISKGVLKVLDERAKLPIQGEISSLNVSVACGAFLYEVVRQR 242


>gi|119493555|ref|ZP_01624220.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
 gi|119452609|gb|EAW33791.1| tRNA/rRNA methyltransferase (SpoU) [Lyngbya sp. PCC 8106]
          Length = 328

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 106/256 (41%), Gaps = 8/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDW 83
            +   K+++   Q+++   + +   L G H +  AL      +      +  N   RL W
Sbjct: 68  QNPLIKQLRKL-QRTKGRREQQLFLLEGTHLIEEALATQYPLLTVCYTAQWQNRYPRL-W 125

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           ++        + V  + +  I        G+   TAP   P   A+  +Q+ + L+ V D
Sbjct: 126 ESVCQAASRSEEVNERVLQAIA-TTVNPDGIIA-TAPRPQPQTVAI--TQIGLALETVQD 181

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A   DG+  +      +   + ++++GA   +P     +LT+ L    
Sbjct: 182 PGNLGTMIRTAAAAGIDGLWLSDDSVDLDHPKVLRASAGAWFRLPMAVGGDLTEQLTIAQ 241

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +    D+     +        ++LG EG GL       A     + + G +++L
Sbjct: 242 QQGVQIVATLPDADLTYWELDFQQPTIVVLGNEGAGLSSSLTALADQHVQIPLSGGVESL 301

Query: 264 NVSNAAAVALYITQNH 279
           NV+  AA+ LY  Q  
Sbjct: 302 NVAICAALMLYEGQRQ 317


>gi|210632460|ref|ZP_03297388.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
 gi|210159555|gb|EEA90526.1| hypothetical protein COLSTE_01285 [Collinsella stercoris DSM 13279]
          Length = 342

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 115/271 (42%), Gaps = 14/271 (5%)

Query: 24  RRNHRDY-KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALAR 80
            R+H  Y +  Q+     R     E  ++ G      AL    P ++       +N  A 
Sbjct: 67  SRSHAAYARDAQASASPRRDVHAAEGNYIEGRRAAFEALRTGFPIKRALIAQGVENDPAV 126

Query: 81  LDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNS 132
            D  A L      VK+V    +D I      HQG+ LE        L             
Sbjct: 127 RDLLAGLGEAGVSVKSVARAQLDAISS-HGAHQGIVLEVGKFPYADLADIIAAAGPADRP 185

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLDHV D  N GAI+RSA      G++   + S   +    K+++GA+ H+P  ++
Sbjct: 186 ALVVVLDHVTDAGNFGAIVRSAEVVGAAGVVIPNKRSAEVTVATYKTSAGAVMHVPIAQV 245

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N+  AL+ + S GF   G +  ++          ++AL++G+EG G+     +T     
Sbjct: 246 PNIARALEDLKSAGFWVGGATEHAEGICWDAPFEGRVALVMGSEGDGISRLVLDTCDFTT 305

Query: 253 HLHMPGIIKALNVS-NAAAVAL-YITQNHFA 281
            L   G  ++LNV+  A A+   ++ +N  A
Sbjct: 306 KLPQRGATESLNVAQAATALCFEWLRRNQTA 336


>gi|331003584|ref|ZP_08327081.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412425|gb|EGG91816.1| RNA methyltransferase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 251

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 14/243 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           + G + V  A     + + +L      K+            H   V  V    +D +  +
Sbjct: 6   IEGRNVVIEAFR-GGKTVDKLYLQDGLKDYTISTILREAKKHGTYVNFVSKDRLDTM-SE 63

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    A     +++ +            + +LD + DPHN+GAI+R+A      
Sbjct: 64  TGKHQGVIAIVAAYEYASVEDILEKARQKNEPPFIFILDGIEDPHNLGAIIRTANLSGAH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   +A +A++++GA+ + P  +++N+   +Q++   G   +      +K +
Sbjct: 124 GVIIPKHRAVGLTAAVARASAGAINYTPVAKVTNINKTMQELKDAGMWFVCADMGGEK-M 182

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279
                   I L++G EG G+    ++    +A + M G I +LN S A  V  Y   +  
Sbjct: 183 YNIDLTGSIGLVIGNEGDGVSESVKKNCDFIASIPMNGDIDSLNASVACGVLAYEIVRQR 242

Query: 280 FAK 282
            AK
Sbjct: 243 IAK 245


>gi|291459362|ref|ZP_06598752.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417961|gb|EFE91680.1| RNA methyltransferase, TrmH family, group 3 [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 250

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 15/247 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQT 100
           + E   L G   V  A  +    + +L       +  L+ +  +A      P+  V    
Sbjct: 2   RDEQFTLIGRQPVLEAYRSGQ-TVDRLFVQEGLREGTLSSILREARR-QSTPLDFVKRSR 59

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +D++ G E  HQG+    A      +  +            L++LD + DPHN+GAI+R+
Sbjct: 60  LDEMSGGE-NHQGVMAYLAAYRYYEISDMLSDAREKGEDPFLILLDGIEDPHNLGAIIRT 118

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A      G++  KR +   +A  AK+++GAL +    +++NL+  ++++   G   +   
Sbjct: 119 ANLAGAHGVVIPKRRAAGLTASAAKASAGALNYTKVAKVTNLSKTIEELKKEGIWFLCAD 178

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + +    Q +    IAL++G EG+G+    +E+    A + M G I +LN S A  V  
Sbjct: 179 MEGESMYRQRL-TGPIALVIGNEGEGVSRLVRESCDMRASIPMKGEIDSLNASVACGVLA 237

Query: 274 YITQNHF 280
           Y      
Sbjct: 238 YEIVRQR 244


>gi|296875965|ref|ZP_06900024.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
 gi|296433040|gb|EFH18828.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
          Length = 248

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 121/279 (43%), Gaps = 33/279 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  I + K  H  K R +                     +  + G H    A
Sbjct: 1   MNIITSKSNNVIKNAKKLHQKKYRTD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + N +  I Q+   +  L R++   N      V  V  + +  ++      QG+  E   
Sbjct: 40  VENQAE-IRQVFVLEAYLDRVENIQN------VTVVTSEILS-LLADSKTPQGIVAEI-- 89

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           LL   +   +     + L+ V DP N+G ++R+A A   DG++ +K  +   S    +S 
Sbjct: 90  LLEQPVLPYQLQGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  ++    +  ++        +  + S++     Q  + D++ L++G EGKG
Sbjct: 150 QGSHFHLPIWKLDR-EELFERASQSNLAVLATTLSEASIDYRQLPQIDQLILVMGNEGKG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + P+    A  + H+ MPG  ++LNV+ AA + ++  +N
Sbjct: 209 ISPEMATRADQLVHITMPGRAESLNVAVAAGILMFYLRN 247


>gi|298345950|ref|YP_003718637.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304390347|ref|ZP_07372300.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315657555|ref|ZP_07910437.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298236011|gb|ADI67143.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304326103|gb|EFL93348.1| RNA methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|315492027|gb|EFU81636.1| RNA methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 325

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 19/261 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDAN 86
            +  +   + R  +  ++  ++G + V  A       + +L  +    K+          
Sbjct: 60  TQRAAARDRYRPNTAADSEIIFGRNPVVEA-AAAGVPLKRLFVSASLMKDERLSKVVQRG 118

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------RNSQL 134
                 ++   P  +D+I      HQG+A E A      +  +             +  L
Sbjct: 119 AASGAKLQECSPADLDRITA-GGTHQGIAAEIAAYNYAEVMDLWDRAVTRAKSEPNHPPL 177

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L+VLD V DPHN+GA LRSA AF  DG+I  +  S S +A + K ++GA   +P  +  N
Sbjct: 178 LIVLDQVTDPHNLGATLRSAAAFGADGVIIGEHRSASVTAAVWKVSAGAAAIVPVAKARN 237

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           LT ALQ++ + G   IGL       L + ++ +  + ++ G+EGKG+    +ET   +  
Sbjct: 238 LTHALQQLQAEGAFAIGLDGGGDVDLPDLKLADQPLVVVTGSEGKGISRLVRETCDQIVS 297

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + +   +++LN + A  +ALY
Sbjct: 298 IPIDKRMESLNAAVATGIALY 318


>gi|227496369|ref|ZP_03926659.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226834096|gb|EEH66479.1| tRNA/rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 330

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 14/252 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPHPF--PVK 94
           + R         + G + V+ A       I ++    +  +  RL            PV 
Sbjct: 73  RRRFDVPEGYEIVCGRNAVAEA-ARAGVPISRVFMAVSAESDDRLGAVVRRATLIGCPVL 131

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNI 147
                 ++ +    AVHQG+A+E           L     AV ++ LL+ LD V DPHN+
Sbjct: 132 ETTKLDLEALTD-GAVHQGVAIEVPAYGYTSALDLLDRARAVGHTPLLVALDQVTDPHNL 190

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+LRS  AF  DG+I  +R S   +A + K ++GA   +P  R +NL   L+ +   G 
Sbjct: 191 GAVLRSTGAFGGDGVIIPERRSVGVNATVWKVSAGAAARVPVARETNLVRTLETLKKEGC 250

Query: 208 QTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +GL    +  +E   + +  + L+ GAEG GL    +ET   +A + +   +++LN +
Sbjct: 251 FVVGLDGGGETLMEDLSLADSPLVLVTGAEGAGLSRLVRETCDVIASIPISQTVESLNAA 310

Query: 267 NAAAVALYITQN 278
            A  ++LY    
Sbjct: 311 VATGISLYEVDR 322


>gi|254456252|ref|ZP_05069681.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083254|gb|EDZ60680.1| RNA methyltransferase, TrmH family, group 3 [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 247

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 7/234 (2%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           + F+ G H V  AL NP+RK+ ++  T++A     + +   N+     V     + +DK 
Sbjct: 5   SFFIAGQHAVIEALRNPNRKVLRVFLTEDAKKNIHKKNSRKNVLEDVKVYFKSKKELDKY 64

Query: 105 VGKEA-VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             KE  +H G   E   L  P L      +     + LD V DP NIG+++RSA +F  D
Sbjct: 65  TSKEQLMHNGYIAEVEHLEQPDLKEFIKEKKDCTFVCLDEVTDPRNIGSLIRSAASFKID 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R+ PS+S ++ KSASG +EH+   ++SN+   L+ +    F   G  +  +K  
Sbjct: 125 GLIVKERHFPSDSKLMYKSASGCMEHLNIFKVSNINSTLKNLREKNFWVYGFDARGEKNF 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  K  L+ G+EG G++  T + A     + +   I++LN+SN+AA+  +
Sbjct: 185 TDVKWEGKNVLLFGSEGFGMKEHTGKYADFFVKIDINKDIESLNISNSAAIVFH 238


>gi|315640649|ref|ZP_07895754.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
 gi|315483588|gb|EFU74079.1| TrmH family RNA methyltransferase [Enterococcus italicus DSM 15952]
          Length = 251

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 23/272 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           ++ S K+++  +L++ HR         +K R   Q     L G H V  A+N+ +  +  
Sbjct: 2   EMQSTKNTYVKELKKLHR---------KKGRQDQQR--YLLEGFHLVEEAVNSQAEVVDI 50

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           L++ + A     W         V  V  + +  I  ++   QG+    A    P +  +R
Sbjct: 51  LISPRGAKEWAAWIEEQA--LDVTYVSEEVMAAI-SEQPTPQGIMAVVA---LPRVKEMR 104

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                ++LD+V DP N+G ++R+A A    G+   +  +   +    +S  G+  HI   
Sbjct: 105 VKGKWLLLDNVQDPGNVGTMIRTADAAGFTGVFLGEGTADIYNLKTLRSMQGSHFHIEI- 163

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +   + D  Q     G    G   +      +   K D++ALI+G EG+G+  +      
Sbjct: 164 QNGTIQDICQVFKEVGIPVYGSELNEQAVAYDTVEKTDQVALIMGNEGQGVAKEILAQTD 223

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  ++ + G  ++LNV  AA + +Y    HF+
Sbjct: 224 ANLYIPIYGKAESLNVGIAAGILMY----HFS 251


>gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 259

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 22/280 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN +     E I S K+S         + ++K+Q+  +K R  S  E   L G H V  A
Sbjct: 1   MNFM-----ETIKSAKNSRV-------KAWQKLQT--KKGRQAS--ETYLLDGWHLVQEA 44

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +   K+  ++ T   LA    +  LP   PV  +      K+       QG+  E + 
Sbjct: 45  IQHDG-KLHAVMGTAEQLAEHQEE--LPLGVPVFEITDDIAKKLSDL-VTPQGIFAEVSL 100

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +       +    + LD + DP N+G ++R+A A    G++         S    ++ 
Sbjct: 101 PSATREPQFIHDGAWLFLDAIQDPGNVGTMVRTADAAGFTGVVFGHGSVDPYSPKALRAM 160

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+      NL D        G    G   D     +       + ALI+G EG+G
Sbjct: 161 QGSQFHLT-TTTGNLADWTASFTQNGMNVYGTQLDPEAADVFTVPAQTQFALIMGNEGQG 219

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++P+  +  T   ++ + G  ++LNV+ AA +A++  +  
Sbjct: 220 MQPELAKMTTQNLYIPISGQAESLNVAVAAGIAMFALKAR 259


>gi|219849563|ref|YP_002463996.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
           DSM 9485]
 gi|219543822|gb|ACL25560.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus aggregans
           DSM 9485]
          Length = 252

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 125/246 (50%), Gaps = 15/246 (6%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATK-----NALARLDWDANLPHPFPVKTVPPQTID 102
           +  LYG + V  AL    R + +L+ ++       +A +   A      P++ +  Q +D
Sbjct: 3   SELLYGRNAVREALRARRRTLRRLVVSRSVQESGIIADIIRLAEQA-GIPIERIERQILD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           + + ++A HQG+ LET P     LD         R + LL++LDH+ DP N+G +LR+A 
Sbjct: 62  RQL-RDANHQGVMLETGPYPYVELDECLSSANARREAALLLLLDHLQDPQNLGTLLRTAE 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A  C GII   R +   +  +  ++SGA+EH+    ++NL+  ++++   G   +GL  D
Sbjct: 121 AVGCHGIIIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLSQTIEELQHNGIWVVGLEQD 180

Query: 216 -SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + + ++    N  + L++GAEG G+    +E    +  L + G I +LN + A ++A+Y
Sbjct: 181 ETAQDIDAVDLNLPLGLVIGAEGTGMSRLVRERCDFLVRLPIVGQIGSLNAAVAGSIAIY 240

Query: 275 ITQNHF 280
                 
Sbjct: 241 HAWRQR 246


>gi|170754304|ref|YP_001782766.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
 gi|169119516|gb|ACA43352.1| RNA methyltransferase, TrmH family [Clostridium botulinum B1 str.
           Okra]
          Length = 259

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 115/262 (43%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD    +   +++D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL + ++
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF+ +  S D+          + I + +G EG G+       +   A + MPG  
Sbjct: 178 SLQKKGFKLLVSSLDTNSNFYDVNMENNIIIAVGNEGNGISEVLNTLSDIKAKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       K
Sbjct: 238 ESLNVAVACSIMTFERIRQINK 259


>gi|331703851|ref|YP_004400538.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802406|emb|CBW54561.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 244

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 107/240 (44%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          V  V    +D+++  + 
Sbjct: 5   LIYGKHVVFELLKKHQNMVKEIWVKD--LKILNEFDLKNTKIKVNVVSENKLDQLLETQT 62

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  +       + + +      +   L+++LD ++DP+N GAI+RS    + DGII
Sbjct: 63  QHQGIIAQIKDYNYTSFNQLINDLNTKEKSLVLILDQIHDPYNFGAIIRSCSLLNVDGII 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222
              +     ++ + K++SG+  +I   + +NL +A++ + + GF     + + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFNIKISKTNNLNNAIKILKNNGFWIYATNLNQNSIDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K A+I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 TQFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|332827501|gb|EGK00247.1| RNA methyltransferase, TrmH family, group 3 [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 246

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 105/244 (43%), Gaps = 13/244 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTID 102
            E   ++G+  V  A+      I +++  +     L++        H   V+ VP + +D
Sbjct: 2   KEKEMIFGIRAVIEAIEAGKE-IDKVIIRRELQGDLSKELLALLKSHDVAVQRVPNERLD 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           +   K   HQG+    + +    ++ +            ++VLD + D  N GAI R+  
Sbjct: 61  RFTRK--NHQGVIAFLSAITYEKIEDIVPFLYENGKDPFILVLDGITDVRNFGAIARTCE 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
               + I+   + S + +A   K+++GAL  IP  +  NLT A+Q + + G + +  S  
Sbjct: 119 VAGVNAIVIPAKGSVTVNADAVKTSAGALLKIPVCKEPNLTSAIQFLRNSGIKVVAASER 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +      IA ++GAE  G+  +    A ++  +   G I +LNVS AA V +Y 
Sbjct: 179 GADIYTEIDYTGPIAFVMGAEDVGVANENLRIADNLVKIPQFGTIGSLNVSVAAGVLIYE 238

Query: 276 TQNH 279
               
Sbjct: 239 VIRQ 242


>gi|260588913|ref|ZP_05854826.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
 gi|260540692|gb|EEX21261.1| RNA methyltransferase, TrmH family, group 3 [Blautia hansenii DSM
           20583]
          Length = 269

 Score =  213 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 110/266 (41%), Gaps = 12/266 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD 84
           ++   KK+Q   +K++   + +   + G+   S     P  ++ ++  +++ A       
Sbjct: 6   SNVQIKKVQQILKKAKVRREEQVFAVEGIKMFSEV---PKSRLQKVYLSQSFARKEECEK 62

Query: 85  ANLPHPFPVKTVP-----PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMV 137
             L     ++           I K +      QG+            + +    + LLM+
Sbjct: 63  ILLEKGISIEETEYVELVDDKIFKNLSDTVTPQGVLCLVKMENYTLSEILSGEENPLLMI 122

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + DP N+G ILR+       G+I ++      +  + +S  G++  +P I ++++ +
Sbjct: 123 LEDLQDPGNLGTILRTGEGAGVTGVIMSRTSVDVFNPKVIRSTMGSVYRMPIIYVNSIEE 182

Query: 198 -ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L  +   G  T       +   ++E      A ++G EG GL  +  E+A ++  + M
Sbjct: 183 EVLPLLKEKGITTYAAHLKGRNDYDEECYTKGTAFLIGNEGNGLTEQLTESADTLIKIPM 242

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
            G +++LN + A+ + +Y       K
Sbjct: 243 QGKVESLNAAMASGILMYEAYRQRRK 268


>gi|312865883|ref|ZP_07726104.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
 gi|311098287|gb|EFQ56510.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
          Length = 252

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +     + G H    A  N +     +   ++ L RL      P+   V  V P+ + ++
Sbjct: 30  RKSTYLIEGWHLFEEASANGA-VFEHIFVLEDFLERL------PNQEKVVVVTPEVLKEL 82

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               +  QG+  E     S   +  +     +VL+ + DP N+G ++R+A A +   +  
Sbjct: 83  SDSPSS-QGIVAEVQMDQSSLPETWQGP--YLVLEDIQDPGNLGTMIRTADAAAYQAVFI 139

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE 223
           + + +   ++   +S  G+  H+P  R  ++ D L      G + +  +  +      + 
Sbjct: 140 SDKSADIYNSKTLRSMQGSHFHLPIYR-GSMADFLASFKQAGVRILATTLAEDSMDYRKI 198

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +  AL++G EG+G+  +T + A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 199 ERPESFALVMGNEGQGISEQTAKKADDLLHIDMPGQAESLNVAVAAGIMMF 249


>gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
 gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
          Length = 254

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ KI  LK  H  K R    +Y                    L G H +  A
Sbjct: 1   MKEIQSAKNPKIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +       QG+      
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +L + +  M   GF   G    +    L++  K +  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLAEVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|159900290|ref|YP_001546537.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893329|gb|ABX06409.1| RNA methyltransferase, TrmH family, group 3 [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 246

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 13/242 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA----NLPHPFPVKTVPPQTIDKI 104
             LYG + V  AL    RK+ +LL            A           V  V    +DK 
Sbjct: 2   ELLYGRNAVLEALRANRRKLGRLLIADGIKEGESMQAINTIARERRMQVAKVQRSELDKR 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               A HQG+ALE        +D +           L+++ DH+ DP NIG ++R+A   
Sbjct: 62  TA-GANHQGIALECGAYPYVEVDDIIELARERGEQPLILIFDHLQDPQNIGTLMRTAEIV 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS- 216
              GII   R S S +  +  +++GA+EH+   +I+N+   ++ +  +     G+  D  
Sbjct: 121 GAHGIIFPDRRSASITPAVINASAGAVEHLYVAQITNIAQTIKHLQEYNIWVAGVEDDER 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               ++      +AL++GAEG GL   T+E    +  L M G + +LN + A ++ LY  
Sbjct: 181 AVDFDKANLRGALALVIGAEGPGLARLTRERCDLLVRLPMRGNVASLNAATAGSIILYHA 240

Query: 277 QN 278
             
Sbjct: 241 WR 242


>gi|153939007|ref|YP_001392409.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
 gi|152934903|gb|ABS40401.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
           Langeland]
 gi|295320398|gb|ADG00776.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
           230613]
          Length = 259

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 114/262 (43%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIIEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD    +   +++D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL + ++
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF+ +  S D+          + I + +G EG G+       +     + MPG  
Sbjct: 178 SLQKKGFKLLVSSLDTNSNFYDVNMKNNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       +
Sbjct: 238 ESLNVAVACSIMTFERIRQINE 259


>gi|103486336|ref|YP_615897.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
           RB2256]
 gi|98976413|gb|ABF52564.1| RNA methyltransferase TrmH, group 3 [Sphingopyxis alaskensis
           RB2256]
          Length = 272

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/250 (37%), Positives = 142/250 (56%), Gaps = 19/250 (7%)

Query: 32  KMQSFNQKSRHTS------QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K  +  Q SRH        + + +  +G H V AAL NP R + ++  T+ AL +LD   
Sbjct: 14  KGAAMRQFSRHRRPSGGNQRGQTVRFWGRHAVLAALANPDRAVRRIWGTREALGQLD--- 70

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL--------LSPTLDAVRNSQLLMV 137
            LP   P+       + ++V ++A HQGL +E  PL        L   +DA     L ++
Sbjct: 71  -LPPVIPISYADVADLARLVARDAPHQGLVIEVDPLDGVHLGDLLQEEVDAESRRPL-VI 128

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DPHNIGA+LRSA AF    I+T  R+SP ES V+A+SASGALE +P++R+ NL+ 
Sbjct: 129 LDQVTDPHNIGAVLRSAAAFDAAAIVTQDRHSPPESGVIARSASGALETVPWVRVVNLSR 188

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           AL+++    +  IGL  D++  L + +   K+AL+LG+EG G+R    E    +A L + 
Sbjct: 189 ALEEIAEAQYWRIGLMGDTETTLGETLDGSKVALVLGSEGDGMRHNVMEHCDVLARLPIS 248

Query: 258 GIIKALNVSN 267
             +++LN+SN
Sbjct: 249 PRMESLNISN 258


>gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
 gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
           49175]
          Length = 256

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 27/277 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+EKI  L     AK R+                   +     L G H V  A
Sbjct: 1   MESISSPKNEKIKELVKLQTAKGRK-------------------KAGMYLLEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   + +I  ++ T N L              V  V      K+   E   QG+      
Sbjct: 42  IKERA-QIKLIVVTSNRLEDYKNLLA-QTDVQVLVVSQDVFHKLSMTETA-QGILAVVEI 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +     + + +    +VLD V DP N+G I+R+A A   D ++         +  + +S 
Sbjct: 99  VKQ---EILPHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDKVLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKG 239
            G+  HIP  + +NL + L  +   G Q    +          ++    +A+++G EG+G
Sbjct: 156 QGSHFHIPVFQ-ANLQEYLPILKEKGVQVAVTALHRDSKDYSVLQGATDVAIVVGNEGQG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +     + A  +  + + G  ++LNVS A+A+ +Y T
Sbjct: 215 VSDDVIDLADVVVTIPIFGKAESLNVSIASALLMYKT 251


>gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675454|ref|YP_003867126.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 248

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 116/268 (43%), Gaps = 22/268 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K+          +D+KK+ +  ++++         + G H V  AL +P   + 
Sbjct: 2   KQIESAKNQKV-------KDWKKLHTKKERTK----TNTFLIEGEHLVEEALKSPG-TVK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           ++L         D D           +       +   E   Q  A+   P      + +
Sbjct: 50  EILIKDETKIPSDLDV----SIQCYVLSEDAFSAVTETETPQQIAAVCHMPE-----EKL 100

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + Q ++++D V DP N+G ++R+A A   D ++     + + +    +SA G+  HIP 
Sbjct: 101 ASPQRVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSAQGSHFHIPV 160

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +R  NL   + ++ + G +  G +  +  P     + +  ALI+G EG G+     E   
Sbjct: 161 VR-RNLHTYVDELKAEGVKVYGTALQNGAPYRDMSQAEFFALIVGNEGAGVNAALLEKTD 219

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 220 LNLYVPLYGQAESLNVAIAAAILVYHLR 247


>gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           dentium JCVIHMP022]
 gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
           dentium JCVIHMP022]
          Length = 329

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 40/295 (13%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKS-------------RHTSQPENLFLYGVHTVSAALNN- 63
           +  A+ R  H+ YK  +  +++              +  S+ ++L + G + V  AL   
Sbjct: 25  TPKAENRVYHKAYKAKKVADRRKMADPRLAARRRAAKFASESDDLVI-GRNAVLEALRCG 83

Query: 64  -PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            P+  ++       +   R        H   +       +D+I  + + HQG+ ++  P 
Sbjct: 84  VPASTLYIAARIEHDDRTREIVRLAGIHGLHLMEADRLEMDRIA-RSSNHQGIVMKAQPF 142

Query: 122 LSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              +L  +                         L + LD V DP N+GA++RSA AF  +
Sbjct: 143 QYSSLAELVERADKKSRAMEAANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGAN 202

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R S S +A   K ++GA  H+P  R+ NLT A++ +   G+ +IGL       +
Sbjct: 203 GVILPERRSASVTAAAWKVSAGAAAHMPVARVVNLTKAIESLKERGYYSIGLDGGGDALV 262

Query: 221 -EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E   + D + ++LG+EG GL    + T   +A + M  ++++LN S AA + LY
Sbjct: 263 GETGFETDPLVVVLGSEGNGLSRLVRSTCDVIAGIPMSSMVESLNASVAAGITLY 317


>gi|188995645|ref|YP_001929897.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595325|dbj|BAG34300.1| putative tRNA:rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 249

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 11/239 (4%)

Query: 50  FLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++G+H++S A        KIF     K           +    PV  VP + +D++  K
Sbjct: 6   MIFGLHSISEAFEAGKEIDKIFIRRGLKTEQTEAIIREAVERCVPVMHVPIEKLDRLTSK 65

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG+    + +    LD +         +  L++LD + D  N GAI R+A     D
Sbjct: 66  --NHQGVVAILSAIEYTRLDQLIPMLYEEGKAPFLLLLDGITDVRNFGAIARTAECAGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            II  +R S S      K+++GAL  IP  R++++  A++ +  +G + +  S  +    
Sbjct: 124 AIIIPERGSISVGGDAIKTSAGALHRIPVCRVTSIPGAIRSLQEYGIRIVAASEKAADLY 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   + +++GAE  G  P T   A  +  +   G I +LNVS AA + +Y     
Sbjct: 184 TDVPMKLPLGIVMGAEDVGPSPDTLRMADGIVAIPQMGAIGSLNVSVAAGIVIYEVVRQ 242


>gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
           27560]
 gi|149734771|gb|EDM50688.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
           27560]
          Length = 255

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 14/258 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   KK+    +KS+         + G          P+  +  +  ++  L       
Sbjct: 7   SNEQIKKLIQLKEKSKVRKTTGTFTVEGKKMFVEI---PAEDLVSVYVSETFLKENGELV 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDH 140
                   + V  Q   KI       QG+        S ++D +     +    ++VLD 
Sbjct: 64  KEKK---YQIVSDQVFKKISDT-VTPQGIVAVVK-QKSYSIDYIIEKRNKEKSCIVVLDR 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+  A    GII +K  +   +  + +S  G++  +P+  + +L  A+ 
Sbjct: 119 LQDPGNMGTIVRTGEAAGISGIIMSKDSADIYNPKVIRSTMGSIFRVPFAIVDDLAAAVD 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   G  T       +            AL++G E +GL  +    A  +  + M G +
Sbjct: 179 TLKDNGITTYAAHLKGE-LYNSGSLTKDCALLIGNEARGLSEEISAKADKLIKIPMHGKV 237

Query: 261 KALNVSNAAAVALYITQN 278
           ++LN + A A+ +Y    
Sbjct: 238 ESLNAAIATAILMYEAAR 255


>gi|255327493|ref|ZP_05368560.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
 gi|255295387|gb|EET74737.1| RNA methyltransferase, TrmH family [Rothia mucilaginosa ATCC 25296]
          Length = 292

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 4/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R Y ++     +S    Q           +  AL    + +  L++ K A    D     
Sbjct: 38  RYYTQLTDVKLRSAMEPQWGIYIAESSKVIRRALAAGHQPVSFLMSEKWADDLADVLRAH 97

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P   P      + ++++ G       LA    P   P    ++ +  + +L+ + D  N+
Sbjct: 98  P-DTPAYVGSEEQLEQVTGFHLHRGALAAMARPAPQPLEQLLQGASRVAILEDIVDHTNV 156

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A + D ++ T R +        + + G +  +P+ R+ +    LQ +H  GF
Sbjct: 157 GAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGF 216

Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++  L+ +      +E+   +++K+ALILG EG GL P+T         + M   + +LN
Sbjct: 217 KSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLN 276

Query: 265 VSNAAAVALYITQ 277
           V+ A+AVA + T+
Sbjct: 277 VAAASAVAFWETR 289


>gi|325295000|ref|YP_004281514.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065448|gb|ADY73455.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 237

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGK 107
           + +YGV+ V+ AL      + ++ A K    R             +  V  + + ++   
Sbjct: 1   MVVYGVNPVAEALRAGY-PVLKIYAEKTFRDREKILPFARKRGIKIVKVGKKKLFELAKT 59

Query: 108 EAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           E  HQG+    +P+     +     A+  +  L+ LD + DPHN+GAI RSA AF   GI
Sbjct: 60  EK-HQGIVAVISPVEPKDFEELVQRALETNGCLLFLDRIEDPHNLGAIFRSADAFGVAGI 118

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  K  S + +  + K+++GA+ +IP+  +S+   AL+K    G   IGL S   K +  
Sbjct: 119 VLPKDRSATITNTVVKASTGAVFYIPFSIVSSFRLALKKFKEAGGWLIGLES-GGKSISN 177

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + L+ G+EGKGL   T +       + M G + +LNVSNA A+ LY+     +K
Sbjct: 178 YSFPFPLGLVAGSEGKGLSKTTLKLLDDTVTIPMKGHVNSLNVSNAVAIGLYLVSQQQSK 237


>gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
 gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
          Length = 223

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 11/231 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
            G H +  A  +   +I +L  T+  +        +        V  + +  +       
Sbjct: 2   EGFHLIEEA-ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTP 59

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+          T D        ++LD+V DP N+G ++R+A AF   G++  K  +  
Sbjct: 60  QGILAVMTLTSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADI 116

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIA 230
            S  + +S  G+  H+P ++  +L D +  M   GF   G    +    L++  K +  A
Sbjct: 117 YSTKVLRSMQGSNYHLPVLQ-KDLADVIPVMKGKGFTVYGTELNEEAHALDKVEKTEDFA 175

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +I+G EG+G+  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 176 IIMGNEGQGVSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 222


>gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414431|gb|EFY05245.1| putative RNA methyltransferase, TrmH family, group 3
           [Phascolarctobacterium sp. YIT 12067]
          Length = 261

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 105/253 (41%), Gaps = 5/253 (1%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPH 89
           K  +  ++ ++  Q       G+ TV  A+   +  +  +  T  ++   R   +     
Sbjct: 12  KAAAELKQKKYRQQQGLFLAEGLRTVEEAVRYGA--VQSIFYTAIEDDRTRAVLEEAAAK 69

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +  V  + + KI   E   QG+            + + + ++L+VLD V DP NIG 
Sbjct: 70  QIKLVCVSDKVLKKIADTE-TPQGIIAVCEMRSKRLDEFLASGKMLLVLDRVTDPGNIGT 128

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +LR+A A    G++  +  +   +    +++ G+L H+P +   +    +Q     G++ 
Sbjct: 129 MLRTADAAGVGGLLLLQGCADIYAPKTVRASMGSLFHLPVLSGLSEELLVQAARKAGYEL 188

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +    D    L +     ++A ++G E  G+ P     A     + M G  ++LNV+ AA
Sbjct: 189 LVTCLDGADNLYKADLQGRLAFVMGNEANGVSPALLAAADKRVFIPMQGRAESLNVAMAA 248

Query: 270 AVALYITQNHFAK 282
            + ++       K
Sbjct: 249 GIVMFEALRQKLK 261


>gi|332654055|ref|ZP_08419799.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
           bacterium D16]
 gi|332517141|gb|EGJ46746.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcaceae
           bacterium D16]
          Length = 261

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 10/232 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++S       +  + G + V  AL       KIF      +A               V  
Sbjct: 8   RRSAPIEAESDGVIEGRNAVIEALRAGVTIDKIFIAKGETDATLGHIASTAREKGIVVVD 67

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIG 148
              + +D +    + HQG+    A     T+D +           L++V D ++DPHN+G
Sbjct: 68  ADRRKLDGMSRTHS-HQGVIALCAVREYVTVDDILAIAQEKGEKPLIVVCDELSDPHNLG 126

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A++R+A A    G+I  KR S   +AV+AK+++GA+ H+P  R+ NL  AL+++   G  
Sbjct: 127 AVIRTADAAGAHGVIIPKRRSAGLTAVVAKTSAGAVAHVPVARVPNLVAALKELQQAGVW 186

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             G +++    L Q       A+++G+EG G+     E       + M G I
Sbjct: 187 VFGTAAEGTTSLYQADLKGPAAIVIGSEGDGMGRLVTENCDFTVSIPMFGKI 238


>gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
           5427]
 gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
           5427]
          Length = 263

 Score =  212 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 96/255 (37%), Gaps = 7/255 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K ++   +K           + G+  V         KI  L+ T     +     
Sbjct: 10  QNNVIKNIKELQKKKSARKSEGLFVIEGIRGVKEI--PSHVKIKYLITTSEVDEKELGAV 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     V  +  + I   ++  QG            +     +   +VL+++ DP 
Sbjct: 68  KAEERL---EVSKEIYNSISDTQS-PQGAMAVAYMPTYDLVHFNIEAGHYLVLENLQDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A AF   G+  TK      S  + +S   +L H+P +    +   +  +   
Sbjct: 124 NLGTIIRTAHAFDFKGVFITKGSVDLYSPKVVRSTMSSLFHVPIVIEEEIDTYMDFLKQK 183

Query: 206 GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G      +     KP+      +K+A+I+G EG G+  + +E +     + MPG  ++LN
Sbjct: 184 GVTLYTTALIPGAKPIYDVTFEEKVAIIIGNEGNGVSERVKEASDHTVIIPMPGAAESLN 243

Query: 265 VSNAAAVALYITQNH 279
            + A ++ +Y     
Sbjct: 244 AAIATSICMYEITRQ 258


>gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101]
          Length = 257

 Score =  212 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 116/257 (45%), Gaps = 9/257 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LD 82
            +N+  +K+++   +K ++  +     + G+  V  A+ +    I  ++ T++   +  D
Sbjct: 6   SKNNNLFKEIKRLKEK-KYRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPD 63

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
               +     +  +    + ++   E   QG+              +++ +L++++D V 
Sbjct: 64  LFLKINENIKLIQMNEALLKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQ 118

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    GI+ TK      +    +S  G++ +IP +   +L D ++ +
Sbjct: 119 DPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSL 177

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G++ +  S   K    +E    K+ + +G EG G+  +  + A     + MPG  ++
Sbjct: 178 KKEGYKLVVSSLQGKNNFFEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAES 237

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A ++ +Y     
Sbjct: 238 LNVAVATSIMIYEKIRQ 254


>gi|212638387|ref|YP_002314907.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559867|gb|ACJ32922.1| SpoU family rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 254

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 113/275 (41%), Gaps = 22/275 (8%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           + +++ ++I S K+          + +K++ +  ++ +         + G H V  AL +
Sbjct: 1   MGEQRVKRIESPKNERV-------KQWKRLLTKKEREK----TGLFLVEGFHLVEEALKS 49

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
               +  L+ ++       W  +     P+  V    I ++   E   QG+      L  
Sbjct: 50  --NIVELLIVSETKTIPTSWKVD---HIPMVIVTEAVIGELSDTE-TPQGIVAVCRHLQW 103

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              D     Q  + +D V DP N+G I+R+A A   D ++  +      +A + ++  G+
Sbjct: 104 NVADV----QTALFIDAVQDPGNVGTIIRTADAAGIDAVVVGEGSVDIYNAKVIRATQGS 159

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L H P I+  ++   +    +      G S  +         +   ALI+G EG G+  K
Sbjct: 160 LFHFPVIK-GDIGQWIAHFQNRHIPIYGTSLQNGVDYRSVSPSSSFALIVGNEGSGVNDK 218

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  T+  ++ + G  ++LNV+ A  + LY  Q 
Sbjct: 219 WLQQTTANLYVPIYGQAESLNVAVATGILLYHLQK 253


>gi|83319473|ref|YP_424103.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283359|gb|ABC01291.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma capricolum
           subsp. capricolum ATCC 27343]
          Length = 244

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 104/240 (43%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H +   L      + ++      L  LD          +  V    +D+++    
Sbjct: 5   LIYGKHVIYELLKKHKNMVKEIWV--KNLKLLDEFDLKNTKIKINVVSENKLDQLLKTNE 62

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +HQG+  +         D +      +   L++VLD ++DP+N GAI+RS    + DGII
Sbjct: 63  LHQGIIAQIKDFNYTPFDELLNDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGII 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222
              +     ++ + K++SG+   I   + +NL +A++ + + GF     + + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K  +I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 TQFANKSVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|315186657|gb|EFU20416.1| RNA methyltransferase, TrmH family, group 3 [Spirochaeta
           thermophila DSM 6578]
          Length = 241

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 11/239 (4%)

Query: 48  NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           ++++ G   V   L +P    ++  L  T     R             +    Q + + V
Sbjct: 3   SVYITGKRAVETYLVDPGVKERVVCLYVTDPHHHRHFLSLAREAGIRSEVCSAQELSRYV 62

Query: 106 GKEAVHQGLALET-APLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           G    H+G ALE        TL+ +    + + LL+ LDH+ DPHN+GAILRSA  F   
Sbjct: 63  G---THRGFALEVLRTFKEATLEDLCGQAQENALLVALDHLQDPHNVGAILRSADQFGAL 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R +  ++A ++KS+SGA   +P +  +NL  AL  +   GF   G   +  +P+
Sbjct: 120 GVIIPERRAVKDAASISKSSSGADAFVPVVVETNLRRALLHVKKAGFWVYGADMEG-QPV 178

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   + ++ L+LGAEGKGL    +E    +  +   G + + NVS AA + +Y  +  
Sbjct: 179 HEVDLSGRVCLVLGAEGKGLSRLLREEVDLLVAVPAHGHVDSFNVSVAAGILMYEVRRQ 237


>gi|289705925|ref|ZP_06502302.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
           SK58]
 gi|289557353|gb|EFD50667.1| RNA methyltransferase, TrmH family, group 3 [Micrococcus luteus
           SK58]
          Length = 329

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 21/294 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H AK +   R   K      + R   +  +  + G + V  AL   
Sbjct: 37  TPKAEDRVYH--KAHRAK-QLAERSAAKRGPVTDQVRGRVKLTDETVSGRNPVLEALRAG 93

Query: 65  -SRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
              K   +        R+     L      PV       +D++ G EAVHQG+ L+  P 
Sbjct: 94  IPAKALHVAVRIEMDDRVKEALRLCLEQGVPVLENTKPELDRLSG-EAVHQGIVLQIPPY 152

Query: 122 LSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                 A             +R   LL+ LD + DP N+GAI+R+  AF  DG+I  +R 
Sbjct: 153 EYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERR 212

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKND 227
           S   +A   ++++GA   +P  +  NL   L  +H  G+  +GL       L    +  +
Sbjct: 213 SVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGYFVLGLDGGGDVSLPGLALATE 272

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + L++GAEGKGL    +E    +  + +   +++LN S A  ++LY      A
Sbjct: 273 PLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQRA 326


>gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801]
 gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801]
          Length = 260

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 112/273 (41%), Gaps = 16/273 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I SLK+    ++R+ HR           ++   +   L   G H +  A       +  L
Sbjct: 2   ITSLKNPLVKQIRQLHR-----------TKGRREQNLLLFEGTHLLETACEVNC-SLDCL 49

Query: 72  LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T    +R    W+        ++ V P+ +  +         +A    P +S     +
Sbjct: 50  CYTAQWQSRYPQLWELATQKAQRIELVSPEVLQALATTVNPDGVIATAVNPKISKP--TI 107

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + ++ ++L+ + DP N+G I+R+AVA   DGI  +      ++  + +S++GA  H+P 
Sbjct: 108 ADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSAGAWFHVPL 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I   +L+  ++   + G Q I     +              ++LG EG GL  +    A 
Sbjct: 168 IVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDLTQPSLILLGNEGAGLSEELASLAD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + +   I++LNV+ A A+ LY  Q    +
Sbjct: 228 QTVSIPLGNTIESLNVAIACALLLYERQRQIRQ 260


>gi|256847491|ref|ZP_05552937.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256716155|gb|EEU31130.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 257

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 115/271 (42%), Gaps = 22/271 (8%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
            E+I S+ + H        +D++K+Q+   + +         L G H V  A ++  R I
Sbjct: 2   REQITSVHNQHV-------KDWRKLQTRKGRKKF----GQYLLDGWHLVQEASHSNQRLI 50

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
             + + +      D  A   +   V  V P+ I  I       QG+         P ++ 
Sbjct: 51  ALIGSAEELSQHEDIVARFEN---VYEVTPEIIKHITETN-TPQGIVAVV---EMPDVNQ 103

Query: 129 VRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           V N +    ++LD V DP N+G ++R+A A    G++ +KR +   +  + +S  G+  H
Sbjct: 104 VTNPKTGAWLLLDRVQDPGNVGTMVRTADAAGFAGVVASKRTADFFNPKVVRSMQGSQFH 163

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  + +++L   +           G   +   K           AL++G EG+G+  +  
Sbjct: 164 LQLV-VADLKRWINDFQDDQHPVYGTQLNPLAKNFRHVQPGKDFALVMGNEGQGMAEELL 222

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              T+  ++ M G  ++LNV+ +A + ++  
Sbjct: 223 NQTTTNLYIPMRGNAESLNVAVSAGILMFQL 253


>gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
 gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
          Length = 260

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 112/273 (41%), Gaps = 16/273 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I SLK+    ++R+ HR           ++   +   L   G H +  A       +  L
Sbjct: 2   ITSLKNPLVKQIRQLHR-----------TKGRREQNLLLFEGTHLLETACEVNC-SLDCL 49

Query: 72  LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T    +R    W+        ++ V P+ +  +         +A    P +S     +
Sbjct: 50  CYTAQWQSRYPQLWELATQKAQRIELVSPEVLQALATTVNPDGVIATAVNPKISKP--TI 107

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + ++ ++L+ + DP N+G I+R+AVA   DGI  +      ++  + +S++GA  H+P 
Sbjct: 108 ADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSAGAWFHVPL 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I   +L+  ++   + G Q I     +              ++LG EG GL  +    A 
Sbjct: 168 IVSCDLSATIKHYQASGVQVIATLPTATNTYWDVDLTQPSLILLGNEGAGLSEELASLAD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + +   I++LNV+ A A+ LY  Q    +
Sbjct: 228 QTVSIPLGNTIESLNVAIACALLLYERQRQMRQ 260


>gi|311069356|ref|YP_003974279.1| putative RNA methylase [Bacillus atrophaeus 1942]
 gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942]
          Length = 248

 Score =  212 bits (541), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 114/268 (42%), Gaps = 22/268 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K+          +D+KK+ +  ++++         + G H V  AL      + 
Sbjct: 2   KRIDSAKNQKV-------KDWKKLHTKKERTK----TNTFLIEGEHLVEEALKTEG-AVK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           ++L         D D           +       +   E   Q  A+   P      D++
Sbjct: 50  EILVKDEGKIPPDLDM----SIHCYILSEDAFSAVTETETPQQIAAVCRMPE-----DSL 100

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + + L+++D V DP N+G ++R+A A   D ++       + +    +SA G+  HIP 
Sbjct: 101 TSYKRLLLIDAVQDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSAQGSHFHIPI 160

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++  NL   ++++ + G +  G S  +    ++       ALI+G EG G+     E   
Sbjct: 161 VK-RNLHVFIEELKASGVKVYGTSLQNGSAFQETAPIGSFALIVGNEGAGVDSAILEKTD 219

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AAAV LY  +
Sbjct: 220 LNLYVPLYGQAESLNVAIAAAVLLYHLR 247


>gi|322807442|emb|CBZ05016.1| RNA methyltransferase, TrmH family [Clostridium botulinum H04402
           065]
          Length = 259

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 114/262 (43%), Gaps = 9/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K+++   +K ++ +Q ++  + G      AL + S  + ++   + +L +L+ 
Sbjct: 4   SKDNQLIKEVRKLREK-KYRTQNKSFIVEGFRFFEEALKSNS-SVNKVFIEEKSLNKLEE 61

Query: 84  DA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                N+ +      V    +  I G     QG+           LD    +   +++D 
Sbjct: 62  LYKKYNINNDIETYVVNYSVLKSI-GNTENPQGIVSVINYFKKEKLDL--QNGFYILVDK 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G+ITTK      +    +S  G++ +IP I   NL + ++
Sbjct: 119 VQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSIFYIPIIEDENL-EVVK 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF+ +  S D+          + I + +G EG G+       +     + MPG  
Sbjct: 178 SLQKKGFKLLVSSLDTNSNFYDVNMKNNIIIAVGNEGNGISEVLNTLSDIKVKIPMPGAA 237

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LNV+ A ++  +       +
Sbjct: 238 ESLNVAVACSIMTFERIRQINE 259


>gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
 gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
          Length = 266

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 103/259 (39%), Gaps = 3/259 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81
           L   +   K      +K +H  +     + G+H V  AL++ +          K     L
Sbjct: 4   LSPQNARAKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECLAYDVDKGIPQEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               +         V    I K+    +  Q  A+            +R + L++VLD +
Sbjct: 63  RHITDTGQGAEWIGVSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGLVVVLDGL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+RSA A    G++  +  +   +    +S  G+L H+P +   +L   L +
Sbjct: 123 QDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLE-GDLLSILPE 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G + +    + ++   +        +++G+EG+G+ P+          + MPG  +
Sbjct: 182 ARERGARLVTTMLEGQRSCFEYDFKGTSWIVIGSEGRGVSPEVAALVDDAIRIPMPGRAE 241

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + AA+V +Y      
Sbjct: 242 SLNAAMAASVLMYEALRQR 260


>gi|238917600|ref|YP_002931117.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
 gi|238872960|gb|ACR72670.1| RNA methyltransferase, TrmH family [Eubacterium eligens ATCC 27750]
          Length = 279

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 106/257 (41%), Gaps = 10/257 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANL 87
           K + S   K+R   + +   + GV  VS     P+  + ++  ++   +       +   
Sbjct: 26  KHVISLLSKARERKKNKEYVVEGVRMVSEV---PADLLVKIYMSERFHSNNPEYVHELVK 82

Query: 88  PHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                   ++ V     D++  +    QG+        S   D + ++ LL++++++ DP
Sbjct: 83  KQGISSDSIEIVADNVFDRM-SQTQTPQGIMAVVRMKDSSISDMLTDNPLLILVENLQDP 141

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR        G+I +       +    +S  G++  +P++ + + +DA+ +  +
Sbjct: 142 GNLGTILRMGEGAGVTGVIMSSNTVDIYNPKTIRSTMGSIFRVPFVYVQDFSDAVSQCKN 201

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G +      D K     E   +  A ++G EG GL     + A ++  + M G +++LN
Sbjct: 202 AGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTEDITKQADTLIRIPMQGEVESLN 261

Query: 265 VSNAAAVALYITQNHFA 281
            + A  +  Y      +
Sbjct: 262 AAIACTILTYEAVRQRS 278


>gi|52783332|sp|Q9RED7|RLMB_BURSP RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
           AltName: Full=23S rRNA Gm2251 2'-O-methyltransferase
 gi|6687040|emb|CAB64790.1| YjfH protein [Burkholderia sp.]
          Length = 247

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 9/245 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTID 102
           P    L+G H ++A L      + ++    A ++A  R            +       ++
Sbjct: 2   PRLKLLHGFHAITARLRAFPATVNEVWYDPARQDARMRAFLHLAASANARLIAADASRLN 61

Query: 103 KIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + G E  HQG+            L   LD +    LL+ LD V DPHN+GA LR A   
Sbjct: 62  ALSG-EKRHQGVVARVTEATRAHSLETLLDTIEGQPLLLALDGVTDPHNLGACLRVADGA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  +R +   +A  AK+A+GA E +PY+ + NL  AL+ + + G Q IG + D+ 
Sbjct: 121 GAHAVIAPRRRAAGLTAAAAKAANGAAETVPYLTVINLARALRALKNAGIQVIGTADDAT 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L     +  +AL++GAEG G+R  T+E    +  + + G +++LNVS A+ + L+   
Sbjct: 181 TSLFDIQLDGALALVMGAEGAGMRRLTREACDEVVRIPLAGHVQSLNVSVASGICLFEAV 240

Query: 278 NHFAK 282
               K
Sbjct: 241 RQRLK 245


>gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
           5501]
 gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
           5501]
          Length = 268

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 112/276 (40%), Gaps = 17/276 (6%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           SE I S K+S    LR  +R            ++  +     L G   ++ AL   +  I
Sbjct: 2   SEVISSFKNSKIKFLRSLYR-----------KKYRRRNNKFILEGSRIITDALEAKA-DI 49

Query: 69  FQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
            Q+  +   L++    +  A L     +  +    ++KI    A  QG+           
Sbjct: 50  DQIFYSAQFLSQQKNKELLAQLREVTEIIEITDSLLNKIADT-ATPQGIIAIVNQPEFEL 108

Query: 126 LDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            D +  ++ L +++D + DP N+G ILR+A     DG+   K      +    ++  G+L
Sbjct: 109 EDFLIEDNDLFLIIDRIQDPGNLGTILRTADGAGVDGVFLLKGTVDIYNLKTIRATMGSL 168

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P   +++ +D    +     Q +    ++K    +   N   AL++G EG G +P+T
Sbjct: 169 FRVPVFGLNSPSDLTDILQMKDIQMVAADIEAKDYYYELDYNQPTALVIGNEGAGAQPET 228

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + A     + +   I +LN + A+ + +Y      
Sbjct: 229 LKLADKKVKIPLSEGIDSLNAAIASGIIMYEMVRQR 264


>gi|283458109|ref|YP_003362724.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134139|dbj|BAI64904.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 292

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 4/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R Y ++     +S    Q           +  AL    + +  L++ K A    D     
Sbjct: 38  RYYTQLTDVKLRSAMEPQWGIYIAESSKVIRRALVAGHQPVSFLMSEKWADDLADVLRAH 97

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P   P      + ++++ G       LA    P   P    ++ +  + +L+ + D  N+
Sbjct: 98  P-DTPAYVGSEEQLEQVTGFHLHRGALAAMARPEPQPLEQLLQGASRVAILEDIVDHTNV 156

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A + D ++ T R +        + + G +  +P+ R+ +    LQ +H  GF
Sbjct: 157 GAIFRSAAALNVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWARLESWPADLQTLHELGF 216

Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++  L+ +      +E+   +++K+ALILG EG GL P+T         + M   + +LN
Sbjct: 217 KSAALALEEDSLTLEELSARRDEKLALILGTEGHGLSPRTLAACDDTVMIPMSHGVDSLN 276

Query: 265 VSNAAAVALYITQ 277
           V+ A+AVA + T+
Sbjct: 277 VAAASAVAFWETR 289


>gi|302386867|ref|YP_003822689.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
 gi|302197495|gb|ADL05066.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
          Length = 259

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 108/256 (42%), Gaps = 7/256 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K++ + ++K +           G+         P+ +I  L  +++ + + +    
Sbjct: 7   NARVKQVMNLSKKVKARKTSGLFVTEGLRMFKEI---PADRIDSLFVSEDFI-KDEAHKR 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA--PLLSPTLDAVRNSQLLMVLDHVNDP 144
           L      +TV  +   K++      QG+          +  L A      LMVL+++ DP
Sbjct: 63  LLAGMKYETVSREVF-KVMSDTQTPQGILALVRQHAFRTEDLLAAPGPAFLMVLENIQDP 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+       G++ ++  +   +  + +S  G++  +P++   +L  +L+ + +
Sbjct: 122 GNLGTILRAGEGAGITGVLMSETTADIYNPKVIRSTMGSVFRVPFVYTEDLPASLKALKA 181

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G +      + +   E+E        ++G E  GL  +T   A +   + M G +++LN
Sbjct: 182 GGVRLYAAHLNGRNNYEKEDYTVDTGFLVGNEANGLTDETAALADACVKIPMKGKVESLN 241

Query: 265 VSNAAAVALYITQNHF 280
            + AA+V ++      
Sbjct: 242 AAVAASVLMFEAARQR 257


>gi|313207250|ref|YP_004046427.1| RNA methyltransferase, trmh family, group 3 [Riemerella
           anatipestifer DSM 15868]
 gi|312446566|gb|ADQ82921.1| RNA methyltransferase, TrmH family, group 3 [Riemerella
           anatipestifer DSM 15868]
          Length = 258

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 103/257 (40%), Gaps = 11/257 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHP 90
           M+      +  +  +  F++G+  V  A+       K+F     + ++          H 
Sbjct: 1   MKQDYTSHQKNNDKKEDFIFGLRPVIEAIEAGKTIDKVFLQNGLQGSIYVELKALLAKHK 60

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVND 143
                VP + ++    K   HQG+    + +   +++AV         +  L++LD + D
Sbjct: 61  IRPNYVPIEKLNHFTRK--NHQGVVAFISDIPFHSIEAVLPEIFEQGKTPFLVILDRLTD 118

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N GAI R+A     D II  ++ +   ++   K+++GAL ++   +  NL   +  + 
Sbjct: 119 VRNFGAICRTAECVGVDAIIIPEKGAAPINSDAIKTSAGALYNVKICKEKNLAHTVDFLQ 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G      +  ++K +         AL++G E KG+  +    +     L + G  ++L
Sbjct: 179 QSGVSVFSATEKAEKLIYDVDFKIPFALVMGNEEKGISKEVLHHSDEKIKLPIEGKTQSL 238

Query: 264 NVSNAAAVALYITQNHF 280
           NVS A    LY      
Sbjct: 239 NVSVACGAILYEVVRQR 255


>gi|120437187|ref|YP_862873.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117579337|emb|CAL67806.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 245

 Score =  212 bits (540), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 116/245 (47%), Gaps = 12/245 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTID 102
            E   ++G+ TV  A+++  + I ++   K+    L  + N       + +  VP + ++
Sbjct: 2   EETTRIFGIRTVIEAIDS-KKDIEKVFIQKDLSGPLFKELNRNLKEGNYNISYVPVEKLN 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+  K   HQG+    +P+   +L+ +         + L ++LD + D  N GAI+R+A 
Sbjct: 61  KL-SKNGNHQGVVANISPIGFVSLEKLVEDSQKSSTTPLFVLLDGITDVRNFGAIIRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                GII  ++ S   +A   K+++GA+ +IP  +++++ DA+  + ++  + I  +  
Sbjct: 120 CCGVTGIIIQEKGSAPINADTVKTSAGAVFNIPICKVNHIKDAVFHLQTYDIKLIAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +   +        IA+I+G E KG+     ++    A L M G I +LNVS A    LY 
Sbjct: 180 TDDVIFDIDLKQPIAIIMGDEAKGISNSILKSVDYKAKLPMLGSIASLNVSVACGAFLYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 AVRQR 244


>gi|293363662|ref|ZP_06610412.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
           A21JP2]
 gi|292552769|gb|EFF41529.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma alligatoris
           A21JP2]
          Length = 231

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 10/232 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + L + G ++V  A NN    I ++        +   +A     FPV+ +  + +++   
Sbjct: 2   KKLIMCGKNSVVDAYNNNW-PIEKVFLLHEQNKKFFKNAK----FPVEVIRKEKMEEWT- 55

Query: 107 KEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               HQG       +    L+++     +L++VLDH+ DPHN+GAI+RSA A     II 
Sbjct: 56  -NENHQGFLATIKEINYSNLNSLIIDKPKLVLVLDHIQDPHNLGAIIRSANAAGVKHIIL 114

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQE 223
            +  S   ++ + K +SG    I +IR+++++  +  + +  F     + D K +   Q 
Sbjct: 115 PRDRSAEINSTVIKVSSGGFIGIKFIRVNSVSATINFLKNNNFWVYASALDKKAQAYNQV 174

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             ++++ALI+G EG G+   T   A    ++   G +++LNVS A  + L+ 
Sbjct: 175 SYSEQVALIVGNEGNGVSKSTLNMADQKIYIEQFGTVQSLNVSVATGILLFE 226


>gi|42561476|ref|NP_975927.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492975|emb|CAE77569.1| rRNA Methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
          Length = 244

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 103/240 (42%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          V  V    +D+++  + 
Sbjct: 5   LIYGKHVVFELLKKHQNMVKEIWVKD--LKILNEFDLKKTKIKVNVVSENKLDQLLETQT 62

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  +         + +      +   L+++LD ++D +N GAI+RS    + DGII
Sbjct: 63  QHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHDSYNFGAIIRSCSLLNVDGII 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222
              +     ++ + K++SG+   I   + +NL +A++ + +  F     + + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K A+I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|222152573|ref|YP_002561748.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113384|emb|CAR41028.1| SpoU rRNA Methylase family protein [Streptococcus uberis 0140J]
          Length = 245

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A     + I  +  T+      + +       P+  V P+ + ++
Sbjct: 23  RKNSYLIEGWHLFEEA-QKSKQPILSVFLTE------ELENFKNSECPIYIVTPEVLKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             +    QG+  E A   SP    +      ++L+ V DP N+G ++R+A A   DG+I 
Sbjct: 76  T-ESPSPQGIVAEIAMPDSPLP--LSQKGKYLLLEDVQDPGNLGTMIRTADAACFDGVIL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++     +    +S  G+  H+P  R +++    Q + S G   +  +        + +
Sbjct: 133 SEKTVDLYNQKTLRSMQGSHFHLPVWR-TDVYSFCQTIQSNGVPVLATTLSKDSIDYKAL 191

Query: 225 K-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ND   L++G EG+G+  +    A  + H++MPG  ++LNV+ AA + ++
Sbjct: 192 PQNDSFVLVMGNEGRGISDEMAALANQLVHINMPGQAESLNVAVAAGILIF 242


>gi|313887237|ref|ZP_07820932.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923328|gb|EFR34142.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 247

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 13/243 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           +   +YG+H ++ +L + S  I ++   K A+     +          PV  VP + +++
Sbjct: 3   KQKLIYGIHALNESLASHS-DIDKIYMKKGAVTGELLEIKRTARTQGVPVMEVPAERLNR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                  HQG+    +P+    L+++            +++LD V D  N GAI R+   
Sbjct: 62  FT--RGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCEC 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                I+  +R S S +A    +++GAL  I   R  +L  A + +   G Q +G   D+
Sbjct: 120 AGVHAIVIPERDSVSVTADAVNASAGALMRISVCRERDLVTACRFLRDSGLQLVGADVDA 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       + +++G+E KG+     +  T    +   G I +LNVS A  + LY  
Sbjct: 180 TTNYTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEV 239

Query: 277 QNH 279
              
Sbjct: 240 VRQ 242


>gi|239916924|ref|YP_002956482.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
 gi|281414620|ref|ZP_06246362.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
 gi|239838131|gb|ACS29928.1| rRNA methylase, putative, group 3 [Micrococcus luteus NCTC 2665]
          Length = 329

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 75/294 (25%), Positives = 126/294 (42%), Gaps = 21/294 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           + K  ++++    +H AK +   R   K  S   + R   +  +  + G + V  AL   
Sbjct: 37  TPKAEDRVYH--KAHRAK-QLAERSAAKRGSVTDQVRGRVKLTDETVSGRNPVLEALRAG 93

Query: 65  -SRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
              K   +        R+     L      PV       +D++ G EAVHQG+ L+  P 
Sbjct: 94  IPAKALHVAVRIEMDDRVKEALRLCLEQGVPVLENTKPELDRLSG-EAVHQGIVLQIPPY 152

Query: 122 LSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                 A             +R   LL+ LD + DP N+GAI+R+  AF  DG+I  +R 
Sbjct: 153 EYADATALALDALAKHEKGHLRTPPLLIALDGITDPRNLGAIIRAGSAFDADGVIVPERR 212

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKND 227
           S   +A   ++++GA   +P  +  NL   L  +H  G+  +GL       L    +  +
Sbjct: 213 SVGVTATAWRTSAGAAARVPVAQAGNLNTTLVDLHKAGYFVLGLDGGGDVCLPGLALATE 272

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + L++GAEGKGL    +E    +  + +   +++LN S A  ++LY      A
Sbjct: 273 PLVLVVGAEGKGLSRMVREHCQQIVSIPIDSTMESLNASMAVGISLYEISVQRA 326


>gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
           ATCC 35580]
 gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
           ATCC 35580]
          Length = 274

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 109/270 (40%), Gaps = 41/270 (15%)

Query: 50  FLYGVHTVSAALNN--------------------------PSRKIFQLLATKNALARLDW 83
            + G H +   L                            PS ++    A +    +   
Sbjct: 3   IITGFHAIEELLRAVEAQLEKNFSGTKSSQIGKKAGGGKTPSVRLKLFYAKQGPRVKKIL 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVG----KEAVHQGLAL--ETAPLLSPTLD--------AV 129
                   P++      +DK+V         H+G+ L  E     SP L         A 
Sbjct: 63  AQAEKLSVPIERRTDAELDKLVAPLPEYLQNHRGIILIDERPQEQSPKLSSDALLAELAS 122

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R    ++VLD + DPHN GAI+RSA  FS D ++  +R S  +   ++K ++GA   +P 
Sbjct: 123 REKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGAAAWVPL 182

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +  +NL   ++++   GF   G  +  + PL      DK  LI+G+EG G+    + +  
Sbjct: 183 LYTANLVRTVEELKRNGFWVFGADAQGE-PLPHTKFPDKTLLIMGSEGSGISRLLKTSCD 241

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           S   +   G + +LNVS AA + +Y  +  
Sbjct: 242 SFTAIPTSGKLDSLNVSVAAGILMYEVRRQ 271


>gi|317488758|ref|ZP_07947292.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|316912128|gb|EFV33703.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
          Length = 248

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 106/248 (42%), Gaps = 19/248 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            F+ G   V  AL      I  +L      ++ L              V+ VP + +D  
Sbjct: 3   DFIEGKRPVIEALRTGV-PIKSILMADNVQRDGLIEDILRKAKRAGATVEMVPRKVLDGK 61

Query: 105 VGKEAVHQGLALETAPLLS-----------PTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
             + + HQG+  + A                + +      L+++LDH+ D  N+GA+ RS
Sbjct: 62  SDRGS-HQGVMAKAASFPYVGIGDVIDAAGKSAEQHDGRALVIILDHITDAGNLGAVSRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    GI+   + S    A   KS++GA+ H+P  ++SNL   + ++   GF   G +
Sbjct: 121 AEAVGACGIVIPNKRSAHVEASTYKSSAGAIAHVPVAQVSNLVQTMSRLKEEGFWIAGAT 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +   + +     KIAL++G E +G+     E    +  L + G + +LNV+ AA   +
Sbjct: 181 EHASDLIWKANLKGKIALVMGNEQEGISRLVMEHCDFLVKLPIEGEVASLNVAQAATACM 240

Query: 274 YI--TQNH 279
           Y    QN 
Sbjct: 241 YEWLRQNQ 248


>gi|269217194|ref|ZP_06161048.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
           700122]
 gi|269129331|gb|EEZ60416.1| RNA methyltransferase, TrmH family, group 3 [Slackia exigua ATCC
           700122]
          Length = 263

 Score =  211 bits (539), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 17/246 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVP--PQTIDKI 104
            ++ G   V  AL +    I ++L   N     ++         F V+ VP   + +D  
Sbjct: 3   DYIEGKRPVIEALRS-EMPIRRVLIADNLKRDGQVADILRKARKFDVEVVPVPRKELDAK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----------RNSQLLMVLDHVNDPHNIGAILRS 153
             +   HQG+  ET P    +   +             + L++VLDH+ D  N+GAI RS
Sbjct: 62  -SERGSHQGVMAETGPYRYASPSDILDEAERHAVDHGGAALVVVLDHITDAGNLGAIARS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A      GII   + S S +A   KS++G++ H+   +++NL   L+++   GF   G S
Sbjct: 121 AEVVGASGIIIPNKRSVSVTAATYKSSAGSINHLKIAQVANLNAVLERLKKNGFWVAGAS 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +   + +     KIAL++G EG G+    Q+    +  L   G + +LNV+ A+   +
Sbjct: 181 EQAHHTVWKAPLYGKIALVMGNEGSGISHLMQDNCDFLVKLPQEGKVGSLNVAQASTAVM 240

Query: 274 YITQNH 279
           Y     
Sbjct: 241 YEWLRQ 246


>gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 263

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 5/260 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L   +   K+     +K ++  +     + G+H V  AL + +         ++ +  ++
Sbjct: 4   LSAQNPRVKEWAGLLEK-KNRDKQGKYLIEGIHLVQEALQSRADVECVCYDLEHGIP-VE 61

Query: 83  WDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
             A       V    V    I K    ++     A+      +      +   L++VLD 
Sbjct: 62  LQAAASAGLDVDWIGVSAAVIAKCSDTKSPQPVFAVVRKDRGTVAPLLAKERSLVVVLDG 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+RSA A + DG+I     +      + ++  G+L H+P +  ++L + L 
Sbjct: 122 VQDPGNVGTIIRSADAVAADGVIVGAGCADIYGPKVLRATMGSLFHLPVV-HADLAEVLP 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +    G +  G S  +            + L+ G+EG GL P  +E       + M G  
Sbjct: 181 QAKQRGIRLAGTSLQAAANCFAYDFTQPVWLLFGSEGGGLSPAVRELMDDGLLIPMRGQA 240

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AA+V LY      
Sbjct: 241 ESLNVAMAASVLLYEAMRQR 260


>gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
 gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
          Length = 361

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 11/241 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQ 99
                + F+ G + V  AL         L+A          DA          V  V   
Sbjct: 108 RRGETDEFVVGRNAVVEALRAGVPASSLLIAGGLEFDERVADARRLAGRAGLTVVDVGRV 167

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRS 153
            +D++    A HQGLAL   P      D V          L++ LD V DP N+GA++RS
Sbjct: 168 ELDRLC-PNAPHQGLALSVPPFEYAHPDDVLAATQSAAPGLVVALDGVTDPRNLGAVVRS 226

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  +G++  +R +   +A   K+++GA   +P  R  NLT  L+     G   +GL+
Sbjct: 227 AAAFGANGVVVPERRAAGMTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLA 286

Query: 214 SDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +D +  ++  ++  D + L++G+EG+GL     E       + M G +++LN   A  +A
Sbjct: 287 ADGEVDIDDLQVAADPLVLVVGSEGRGLSRLVGECCDLKVRIPMAGAMESLNAGVATGIA 346

Query: 273 L 273
           L
Sbjct: 347 L 347


>gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  211 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 81/310 (26%), Positives = 133/310 (42%), Gaps = 38/310 (12%)

Query: 1   MNLISKKKSEKIF----SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF------ 50
           M +I   + +KI        D      R   R + K +++ +K+      E+        
Sbjct: 240 MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKT-WKEATESTIPKIVGE 298

Query: 51  -LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPF--PVKTV 96
            +YGV  V AAL+   R+ + L   +                 +    L       +K +
Sbjct: 299 GIYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEKIGLSIKDL 358

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
               ++ +V     HQGL L+ +PL       L P L       L + LD V DP N+GA
Sbjct: 359 SKHDLN-MVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGA 417

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA  F   G++   + S   S V++K+++G+LE +      N+   L      G+Q 
Sbjct: 418 IIRSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQV 477

Query: 210 IGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPG--IIKALN 264
           +G S   +  PL +        L+LG+EG GLRP  + + T +  +   +P    +++LN
Sbjct: 478 LGGSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPSFLAVESLN 537

Query: 265 VSNAAAVALY 274
           VS AA V L+
Sbjct: 538 VSVAAGVLLH 547


>gi|269792462|ref|YP_003317366.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100097|gb|ACZ19084.1| RNA methyltransferase, TrmH family, group 3 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 256

 Score =  211 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 118/243 (48%), Gaps = 13/243 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTI 101
           S   +  +YG + V + L      +  L++ + +    +    +      P + V  + +
Sbjct: 6   SGAGDDLVYGRNPVMSLLEGGGDCLKVLISRRRSDPVRERIVEICRARGIPFQEVDGKVL 65

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRN---------SQLLMVLDHVNDPHNIGAILR 152
           D++VG  + HQG+    +P+    L+ +           +  L+V+DHV DPHN+GA++R
Sbjct: 66  DRMVGT-SSHQGVVARVSPVGILKLEDLYRLAGASDPVAAFALLVVDHVEDPHNLGAMIR 124

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIG 211
           +A A     ++   R     + V+ K+++GA   +P I + N++ A++++    G   +G
Sbjct: 125 TAEAAGFSAVLFPSRREALPTGVVVKASAGAALRVPLIMVGNVSQAIRRVKEDLGLWAVG 184

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           L +  +  +  E    +IAL++G+EGKGL          +  + M G   +LNVS AA +
Sbjct: 185 LEAQGRASVFDERLPPRIALVVGSEGKGLSRVASAACDDILMIPMMGASGSLNVSVAAGI 244

Query: 272 ALY 274
            +Y
Sbjct: 245 VMY 247


>gi|331269142|ref|YP_004395634.1| rRNA methylase [Clostridium botulinum BKT015925]
 gi|329125692|gb|AEB75637.1| rRNA methylase [Clostridium botulinum BKT015925]
          Length = 260

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 9/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPHPFPVKTVPP 98
           + +Q     + G   V  AL +     + +L +++A  + D       +     V  V  
Sbjct: 23  YRTQEAKFLVEGFRFVQEALKSTFEVPY-VLISEDANEKCDSFNIYELIQDNTKVYLVRD 81

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + ++       QG+        +  ++        +++D + DP N+G I+RSA A  
Sbjct: 82  DILKEVCDTN-NPQGILAVV---NNKVMEIEDQEGFYVLVDRIQDPGNMGTIIRSANASG 137

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G+ITTK      +    +S  G++  IP +   N  + L+ + S GF+ +  S D+K 
Sbjct: 138 ALGVITTKGTVDVYNDKTLRSTMGSIFKIPIVE-DNDFEVLKNLKSKGFKVVVSSLDTKN 196

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    K  + +G EG G+     E       + MPG  ++LN   AA++ +Y    
Sbjct: 197 NFYDIDLTGKSIICVGNEGNGVSDYIYELGDEKVKIPMPGDAESLNAGVAASIMMYEVVR 256

Query: 279 H 279
            
Sbjct: 257 Q 257


>gi|293115791|ref|ZP_05793026.2| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
           2876]
 gi|292808225|gb|EFF67430.1| RNA methyltransferase, TrmH family [Butyrivibrio crossotus DSM
           2876]
          Length = 246

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 101/248 (40%), Gaps = 9/248 (3%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +  +KS    +     + G+         P  +I ++ A+++       +  +   +  +
Sbjct: 2   NLIKKSGVRKERGLFVIEGIRMFVEI---PKDRIVKIYASESFAYD---NKEMLCDYRYE 55

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAILR 152
            V      K++      QG+      L     D  +     +L+VL+++ DP N+G I+R
Sbjct: 56  IVADNVF-KMMSDTKTPQGILAVVKMLEYDIEDLFKKDKVPMLVVLENIQDPGNLGTIIR 114

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A      GII + +     +    +S  G+L  +P++   ++  A+  +     +    
Sbjct: 115 TAEGAGATGIIMSDKTVDIYNPKTIRSTMGSLFRMPFVYSEDVVAAIHSLKQQNIKVFAA 174

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             + +    +E     +A+++G EG GL  +  + A     + M G +++LN + + AV 
Sbjct: 175 HLEGRNYYYEEDMKVPMAVLIGNEGNGLTEELSKEADVRIKIPMEGKLESLNAAVSTAVI 234

Query: 273 LYITQNHF 280
           LY      
Sbjct: 235 LYEAMRQR 242


>gi|308070687|ref|YP_003872292.1| rRNA methylase [Paenibacillus polymyxa E681]
 gi|305859966|gb|ADM71754.1| rRNA methylase [Paenibacillus polymyxa E681]
          Length = 262

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 99/262 (37%), Gaps = 6/262 (2%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81
           +  N+   K+     +K +H ++     + G+H V  AL +            K   A L
Sbjct: 4   ISPNNARVKEWAQLLEK-KHRARQHKYIVEGIHLVQEALRSDVAVETVAYDLDKGIPAEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLD 139
           +    +  P     V    I K        Q +             A+      L+MVLD
Sbjct: 63  NGLNPVDQPVEWVPVSAAVIAKCTDT-KTPQSVFAIVRKEERSVFSALLEQPDALVMVLD 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G I+RSA A    G+I     +   +    +S  G+L H+P I   +L + L
Sbjct: 122 GVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLFHLPVIE-GSLEEFL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +  S G + I  S D+              L++G EG+G+   T         + M G 
Sbjct: 181 PQAKSKGARLISTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATARMVDESVFIPMQGQ 240

Query: 260 IKALNVSNAAAVALYITQNHFA 281
            ++LN + A+ V L+       
Sbjct: 241 AESLNAAMASTVLLFEAMRQRN 262


>gi|194466627|ref|ZP_03072614.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
 gi|194453663|gb|EDX42560.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
          Length = 258

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 17/272 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E++ S+ + H        +D+KK+Q+     +   Q     L G H V  A +    ++ 
Sbjct: 2   EQLTSIHNQHV-------KDWKKLQT----KKARRQTGTYLLDGWHLVQEA-SKAGIELL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +++ T   LA       + +      V  + +  I       QG+A   A   S  L A 
Sbjct: 50  EVVGTTEQLAAHPELEGMANAT--YEVTEEIMKHITDT-VTPQGIAAVVALPDSHRLPAG 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 + LD V DP N+G ++R+A A    G++  +R +      + +S  G+  H+  
Sbjct: 107 PLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGSQFHLQM 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +L   +    S      G   +   K        D  ALI+G EG+G+        
Sbjct: 167 FE-GDLRKWIDDFKSTNAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGMSDDLLSQT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T   ++ M G  ++LNV+ +A + ++    + 
Sbjct: 226 TDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257


>gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
 gi|167663817|gb|EDS07947.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
          Length = 263

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 100/257 (38%), Gaps = 6/257 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWD 84
           +   K + +  +K +   +     + G+         P   + ++ A+++     R   D
Sbjct: 7   NAKVKHLANLKRKRKLRDEEGVFLVEGIRMFRE---TPKMLLKEVYASESFYKKERRMTD 63

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVND 143
             L        +   T+   V      QG+      L     +A    +  L+VL+ + D
Sbjct: 64  EALKGSGAYLEILSDTVFGYVSDTKTPQGILCVVKQLDYRLEEAAAGRAAHLIVLNRLQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A      GI+  +      +    +S  G++  +P+    +L   + ++ 
Sbjct: 124 PGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIRSTMGSIYRMPFYYSQDLKKDIGRLK 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G        + ++  ++       A ++G EG GL  +  + A +   + M G +++L
Sbjct: 184 DKGICIYAAHLNGRQDYDEADYTKPCAFLIGNEGNGLDEEIAQQADTYIKIPMKGRVESL 243

Query: 264 NVSNAAAVALYITQNHF 280
           N + A++V ++      
Sbjct: 244 NAAIASSVLMFEAARQR 260


>gi|319938687|ref|ZP_08013051.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
 gi|319811737|gb|EFW08003.1| SpoU rRNA methylase [Streptococcus anginosus 1_2_62CV]
          Length = 246

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 110/278 (39%), Gaps = 35/278 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  + + K     K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKNTKKLLQKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETA 119
           + N   KI  +   +  + R+         FP V  V  + +  +       QG+  E A
Sbjct: 40  V-NAQAKIRHIFVLEEFVDRV-------QDFPQVYVVTAEILADLADS-KTPQGIVAELA 90

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              +     ++   L   L+ V DP N+G I+R+A A   DG+  ++  +   +    +S
Sbjct: 91  FEEATIPSVLKGKYLF--LEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRS 148

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGK 238
             G+  H+P  R+    D L          +  +        +++      AL+LG EG+
Sbjct: 149 MQGSHFHLPIYRVK-TADFLDLAKQAQLPILATTLSKDSMDYRKLAPLSNFALVLGNEGQ 207

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+  +  E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 208 GISSEMAEAADYLIHISMKGRAESLNVAVAAGILIFAL 245


>gi|307150993|ref|YP_003886377.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7822]
 gi|306981221|gb|ADN13102.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7822]
          Length = 264

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 111/272 (40%), Gaps = 16/272 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I SL++    ++R+ HR           ++   +     + G H +  A    S  +  +
Sbjct: 2   ITSLQNPLVKQMRKLHR-----------AKGRREQNLFLIEGTHLLETACKVKS-SLMVV 49

Query: 72  LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T +   R    W+         + V P+ +  +        G+    A + +PT + +
Sbjct: 50  CCTPDWQNRYPQLWELASQKAQRAEIVTPEILAAMT-TTVNPDGVVASAARISNPT-ELI 107

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L +VL+ + DP N+G I+R+AVA   +G+  +      ++  + ++++G    +P 
Sbjct: 108 SPLSLGLVLEQLQDPGNLGTIIRTAVATEVEGLWLSDDSVDVDNPKVLRASAGEWFRVPM 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               NL   ++   S   Q I       K   +        +++G EG GL  +    A 
Sbjct: 168 RVSQNLPQVIEDYKSQNVQVIATLPQGTKTYWEIDFTRPTLILMGNEGAGLSDELISLAD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ + G +++LNV+ A A+ LY  +   A
Sbjct: 228 IGVNIPLGGGVESLNVAIATALLLYEAKRQRA 259


>gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10]
 gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10]
          Length = 266

 Score =  211 bits (538), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 103/259 (39%), Gaps = 3/259 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81
           L   +   K      +K +H  +     + G+H V  AL++ +          K     L
Sbjct: 4   LSPQNARVKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECVAYDVDKGIPQEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               +         V    I K+    +  Q  A+            +R + +++VLD +
Sbjct: 63  RHITDTGQGAEWIGVSHAVISKVSDTPSPQQVFAVIRKEARQWQDLILRENGMVVVLDGL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+RSA A    G++  +  +   +    +S  G+L H+P +   +L   L +
Sbjct: 123 QDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKTLRSTMGSLFHLPVLE-GDLLSILPE 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G + +    + ++   +        +++G+EG+G+ P+          + MPG  +
Sbjct: 182 ARERGARLVTTMLEGQRSCFEYDFKGTSWIVIGSEGRGVSPEVAALVDDAIRIPMPGRAE 241

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + AA+V +Y      
Sbjct: 242 SLNAAMAASVLMYEALRQR 260


>gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
          Length = 262

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 108/243 (44%), Gaps = 9/243 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++    +KSR   +     + G          P+ +I ++ A+++  A+ + + 
Sbjct: 6   SNAQIKELAKLQKKSRLRDEKGIFLVEGPRMTEEI---PAERIEKVYASES-FAKKNKEF 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHV 141
           +     PV+ +        V      QG+      L     D +    + +  L+VLD++
Sbjct: 62  SEKLQAPVELLTDTVF-AYVSDTKTPQGILAIVKRLNYTMNDLMQVKNQKAPHLVVLDNL 120

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I R+A A    GI+ +K      +  + +S  GA+  +P++ + +L + +++
Sbjct: 121 QDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGAVFRMPFLYVEDLPEKIKE 180

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G +T       +   ++E      A ++G EG GLR +  + A  +  + M G  +
Sbjct: 181 LQKEGIKTYAAYLRGENAYDEEDYTTGCAFLIGNEGNGLRDEVADCADCLIRIPMEGEAE 240

Query: 262 ALN 264
           +LN
Sbjct: 241 SLN 243


>gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
           2522]
 gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
           2522]
          Length = 250

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 28/277 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I    + ++ + K  H  K R                    +     + GVH +  A
Sbjct: 1   MDPIESTSNPRVKTWKKLHSRKGRE-------------------KTGLFLVEGVHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L      + +L+   +    ++W  +     P   V  + + +I   E   QG       
Sbjct: 42  LKAFIH-MKELVIDVDKEIPVEWKVS---NVPQVFVTNKVMKEICETE-TPQGFVAICE- 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            L    +        + LD + DP N+GAI+R+A A   +G++  +      +  + ++ 
Sbjct: 96  -LPDNKNVPLERGKFLFLDGLQDPGNVGAIIRTADAAGINGVVLGEGTVDPFNGKVIRAT 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ H+P  R+ +L +A+Q          G S             D  ALI+G EG G+
Sbjct: 155 QGSIFHLPVQRM-DLKEAVQICKEKNIPVFGTSLQGST-YNAIQPQDNFALIVGNEGSGV 212

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                E      ++ + G  ++LNVS A  + LY  +
Sbjct: 213 EDTLLEMTDQNLYIPIHGKAESLNVSIATGILLYHLR 249


>gi|308174562|ref|YP_003921267.1| RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|307607426|emb|CBI43797.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|328912890|gb|AEB64486.1| putative RNA methylase [Bacillus amyloliquefaciens LL3]
          Length = 257

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 114/272 (41%), Gaps = 22/272 (8%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           + K ++I S K+          +D+KK+ +  ++ +         + G H    AL +  
Sbjct: 7   RNKVKRIDSAKNQKV-------KDWKKLHTKKERLK----TNTFLIEGEHLAEEALKSKG 55

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
                L+  ++A+      A+L    P   +       +   E   +        +    
Sbjct: 56  TVKEILVKDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQR--IAAVCHMPEEK 108

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            D ++    L+++D V DP N+G ++R+A A   D ++     +   S    +SA G+  
Sbjct: 109 PDPLK---RLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHF 165

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           HIP ++   L + + ++ S G    G + ++    +     +  ALI+G EG G+     
Sbjct: 166 HIPILKRP-LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIVGNEGAGVDAGLL 224

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +      ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 225 QKTDLNLYVPLYGQAESLNVAVAAAILVYHLR 256


>gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
 gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
          Length = 261

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 112/270 (41%), Gaps = 16/270 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S+++    ++R+ HR           ++   +   L L G H V  A       +  L
Sbjct: 2   ITSIRNPLIKQIRKLHR-----------TKGRREQNLLLLEGTHLVETAYQEGC-SLMTL 49

Query: 72  LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T+    R    W+         + V  + +  I        G+   TA     T + +
Sbjct: 50  CYTEQWRDRYPQLWENVSKRVKRSELVSIEVLSNIT-TTVNPDGVVA-TALFQPRTEEEI 107

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + QL +V++ + DP N+G I+R+A A   D I  +      ++  + ++++G+   +P 
Sbjct: 108 TDFQLGLVIERLQDPGNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSWFQVPI 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S+LT  ++K  + G   I    D+ +   Q        ++LG EG GL       A 
Sbjct: 168 FVTSDLTTVIKKSKNKGINIIATLPDATQSYWQLSFTKPTLILLGNEGSGLSNSLISLAD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++  + +   +++LNV+ A A+ LY  +  
Sbjct: 228 NLVSIPLGPGVESLNVAIATALLLYEAKRQ 257


>gi|310643902|ref|YP_003948660.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus polymyxa SC2]
 gi|309248852|gb|ADO58419.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus polymyxa SC2]
          Length = 262

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 100/261 (38%), Gaps = 6/261 (2%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81
           +  N+   K+     +K +H ++     + G+H V  AL + +          K   A L
Sbjct: 4   ISPNNARVKEWSQLLEK-KHRTRQHKYIVEGIHLVQEALRSNAAVESVAYDLDKGIPAEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLD 139
           +   +   P     V    I K        Q +             A+      L+MVLD
Sbjct: 63  NGLDSADQPVEWIPVSAAVIAKCTDT-KTPQSVFAIVRKEERSAFAALLEQPDALVMVLD 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G I+RSA A    G+I     +   +    +S  G+L H+P I   +L + L
Sbjct: 122 GVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLFHLPVIE-GSLEELL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +  S G + +  S D+              L++G EG+G+   T         + M G 
Sbjct: 181 PQAKSKGARLLSTSLDASLSCYTIDLRVSTWLVIGNEGQGISAATASMVDESVFIPMQGQ 240

Query: 260 IKALNVSNAAAVALYITQNHF 280
            ++LN + A+ V L+      
Sbjct: 241 AESLNAAMASTVLLFEAMRQR 261


>gi|307298256|ref|ZP_07578060.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916342|gb|EFN46725.1| RNA methyltransferase, TrmH family, group 3 [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 247

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 119/245 (48%), Gaps = 14/245 (5%)

Query: 49  LFLYGVHTVSAAL--NNPSRKIFQLLAT--KNALARLDWDAN--LPHPFPVKTVPPQTID 102
           ++L+G + +   L  ++ +  + +++ T  KN  ++L   A       F ++ + P+ + 
Sbjct: 1   MYLHGRNVLRELLTVDSSALNVKRIVFTNQKNVDSQLLELAEESKARGFRIEEMAPEKLA 60

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            +  +E  HQG+ ++         + +      + +  +++LD + DPHN+GAI+R++VA
Sbjct: 61  NLC-REKKHQGVVIDLKQFPYSDSEELLRAIEEQRTATIVLLDQIQDPHNLGAIIRTSVA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D I  T   S   +  + K ++G    IP I+I N+    + +   GF       + 
Sbjct: 120 VGADAIAITSSNSAEITPSVVKVSAGLAFKIPIIKIINMAQFEEILKEKGFWIYASDMEG 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             P  +   ++K A++ G EGKG+R   +E +  +  + M   + +LNV+ +AA+ L+  
Sbjct: 180 -IPYYENEYSEKSAIVFGNEGKGVRRLVKERSDRLISIPMEDTVDSLNVAASAAIILFDR 238

Query: 277 QNHFA 281
           +   A
Sbjct: 239 RRQLA 243


>gi|239627006|ref|ZP_04670037.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517152|gb|EEQ57018.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 287

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 7/258 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +RH  +           +  AL+     I  L+ T++   +         
Sbjct: 18  YARLTEGQLLNRHEPEKGIFIAESPKVIERALDAGCVPISLLMETRHVGTQARDIIQRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + ++ G       L     P L    D    ++ + VL++V +P NIGA
Sbjct: 78  EIPVYTAEFHVLTQLTGFHLTRGMLCAMYRPPLPGLEDVCGGARRIAVLENVMNPTNIGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSW 205
           + RSA A   D ++ T   S        + + G +  IP+     R S     + ++   
Sbjct: 138 VFRSAAALGMDAVLLTAACSNPLYRRAIRVSMGTVFQIPWTILDSRCSWPQPGISRLRGM 197

Query: 206 GFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF+T  ++  D    ++    +  DK+A+ILG EG GL  +T         + M   + +
Sbjct: 198 GFKTAAMALGDDSICIDDAGLMAEDKLAVILGTEGDGLSKETIADCDYTVRIPMSHGVDS 257

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ A+AV  +     F
Sbjct: 258 LNVAAASAVMFWQIGRAF 275


>gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601]
 gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601]
          Length = 252

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 119/270 (44%), Gaps = 20/270 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I SL++ H        + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2   EVITSLQNVHV-------KTWKKLQTRKGRQK----SGQYLVEGFHLVEEALAQDGL-VK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +++ TK+ +            F V  V  +     +      QG+      +L P++  +
Sbjct: 50  EVIYTKDTILPFSLTETA---FDVYEVTREV-SHAISDTKTDQGVFAVV-EMLEPSILML 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              + L+V D V DP N+G ++R+A A   D ++  +  +   +  + +SA G+  HIP 
Sbjct: 105 FGKRFLLV-DAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSAQGSHFHIPV 163

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+ +NL + +  +   G   IG   D     LE     + +AL++G EG G+     E  
Sbjct: 164 IQ-ANLLEWIGGLEEEGVPVIGALLDEHATKLEDIGPKETLALVVGNEGAGISAPIVERL 222

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   ++ + G  ++LNV+ AA + +Y  + 
Sbjct: 223 SERVYIPIYGKSESLNVAVAAGILMYGIRK 252


>gi|328943536|ref|ZP_08241001.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327491505|gb|EGF23279.1| RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 372

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 103/291 (35%), Gaps = 52/291 (17%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-------NLPHPF 91
           + R         + G      AL      + +LL  +N  A L                 
Sbjct: 79  RPRRERGVRAPMIEGRRACFEALEAH-LPLKKLLVQENMNAALQTADVERLITCARERGI 137

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------------------- 129
             + V    +D +      HQG+  E AP        V                      
Sbjct: 138 ACEYVKKSAMDSLSS-HGAHQGVMFEAAPFAYAEFGDVLAAIDRKGARATDASAADASAA 196

Query: 130 ---------------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                                + + L+++LDHV D  N GAI+RSA       +I     
Sbjct: 197 DASAADAHELVTNTDNQTAAHKQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANAR 256

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             S      K+++GA+ H+P +++ NL  A+ ++   GF  IG S  +++ +       K
Sbjct: 257 CASVGVGAYKTSAGAVLHMPIVQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFTGK 316

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + LI+G+E  G+    Q+    +  L   G I++LNV+ AA V  Y     
Sbjct: 317 VCLIMGSEENGISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQ 367


>gi|149371617|ref|ZP_01891033.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
 gi|149355244|gb|EDM43804.1| tRNA/rRNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
          Length = 248

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 13/245 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPH-PFPVKTVPPQTID 102
            ++  ++G++ V  AL        ++   K  N        A+L      +  VP + + 
Sbjct: 3   KKDYTVFGIYPVKEALAAEI-VFDKVYVQKDINNPKIEQIVADLEKLNVSISNVPEEKLY 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           K+   +  HQG+   T+P+    L+ V         + L ++LD ++D  N GAILR+A 
Sbjct: 62  KLT--KGNHQGIVALTSPIEFHDLETVVEKTLETETTPLFLILDQISDVRNFGAILRTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                 +I  K+     S    K+++GA+ +IP I++ ++ DA+  +   G  TI  +  
Sbjct: 120 CTGVHAVIVQKKGGAPVSGDAVKTSAGAIFNIPIIKVDHIKDAIFYLQGSGVTTIAATEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S+K +  +     +A+++G+EG+G+     +     A L + G I +LNVS A    LY 
Sbjct: 180 SEKTIYDQTLTTPVAIVMGSEGRGVSRSVLQLVDEKASLPVLGEINSLNVSVACGAVLYE 239

Query: 276 TQNHF 280
                
Sbjct: 240 IVRQR 244


>gi|300776744|ref|ZP_07086602.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300502254|gb|EFK33394.1| RNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 249

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 11/242 (4%)

Query: 47  ENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           ++ F++G+  V  A+       KIF   A +  +          +      VP + +++ 
Sbjct: 2   KDDFIFGLRPVIEAIEAGKTIDKIFVQNALQGPIYAELKAILAKNKIRPNYVPVEKLNRF 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             K   HQG+    + +    ++ +         +  L++LD + D  N GAI R+A   
Sbjct: 62  TRK--NHQGVVAFISDVPFHKVEDIVPQLFEQGKTPFLLILDRLTDVRNFGAICRTAECV 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I  ++ +   ++   K+++GA+ +I   + +NL   +  +   G      S  ++
Sbjct: 120 GIDAVIIPEKGAAPINSDAIKTSAGAIYNIKICKENNLAHTVDFLQQSGISVYAASEKAQ 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K +      +  A+++G E  G+  +    A     L + G  ++LNVS A    LY   
Sbjct: 180 KLIYDVNMTEPCAIVMGNEETGISKEVLHHADEKIKLPIEGKTQSLNVSVACGAILYEAV 239

Query: 278 NH 279
             
Sbjct: 240 RQ 241


>gi|240047304|ref|YP_002960692.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae HRC/581]
 gi|239984876|emb|CAT04869.1| TRNA/rRNA methyltransferase [Mycoplasma conjunctivae]
          Length = 229

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 12/228 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           F+ G H++  A+ N       +  TK     L    N       + VP   ++++    +
Sbjct: 4   FICGKHSLLEAIENNI-PFKFIYLTKKPTEALLAKQN------YQIVPMSFLNQLT--TS 54

Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG   +  P+    L+ +       L++LDH+ DP+N+GAI+RSA A     II   +
Sbjct: 55  NHQGYVGQIEPIRFYPLEVLQKEQPNYLLILDHIQDPYNLGAIIRSANAMGVKHIILPNK 114

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN 226
            +   + V  K +SG    I +I +++L+ A++K+  WGF     + D S   ++    N
Sbjct: 115 RASKITEVSLKVSSGGFVGIKFIEVNSLSTAIEKLKKWGFWVYASALDKSSLEIDSVNLN 174

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A+I+G+E KG+     + A  + ++ M G +++LNVS A  + L+
Sbjct: 175 TPAAIIVGSESKGVSKTILKQADEIFYIPMFGSVQSLNVSVATGIILF 222


>gi|146298170|ref|YP_001192761.1| RNA methyltransferase [Flavobacterium johnsoniae UW101]
 gi|146152588|gb|ABQ03442.1| RNA methyltransferase, TrmH family, group 3 [Flavobacterium
           johnsoniae UW101]
          Length = 244

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 108/241 (44%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+      + ++   K     L  D              VP + ++++   
Sbjct: 7   IFGIRAIIEAIQAGQE-VDKVFIQKEISGELMKDLMKVMKRANINFSYVPVEKLNRLTPN 65

Query: 108 EAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG     +P+    ++       A  +  L ++LD ++D  N GAI+R+A     +
Sbjct: 66  --NHQGAVATISPIGFIDIEHLVESTIASGSKPLFLILDQISDARNFGAIIRTAECTGVN 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +    K+++GA+ ++P  ++ ++ DA+  +   G +T+  +  + + +
Sbjct: 124 GIIVQKAGSAPVNGDTVKTSAGAVFNVPICKVEHIKDAIFYLQGSGIKTVAATEKTDQNI 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N+ +A+I+G+E +G+ P   +     A L M G I +LNVS A    LY      
Sbjct: 184 YDLSLNEPLAIIMGSEDRGINPSVLKIVDEKAKLPMFGSIGSLNVSVACGAFLYEAVRQR 243

Query: 281 A 281
           +
Sbjct: 244 S 244


>gi|308234254|ref|ZP_07664991.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae DSM
           15829]
          Length = 367

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/291 (21%), Positives = 103/291 (35%), Gaps = 52/291 (17%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA-------NLPHPF 91
           + R         + G      AL      + +LL  +N  A L                 
Sbjct: 74  RPRRERGVRAPMIEGRRACFEALEAH-LPLKKLLVQENMNAALQTADVERLITCARERGI 132

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---------------------- 129
             + V    +D +      HQG+  E AP        V                      
Sbjct: 133 ACEYVKKSAMDSLSS-HGAHQGVMFEAAPFAYAEFGDVLAAIDRKGARATDASAADASAA 191

Query: 130 ---------------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                                + + L+++LDHV D  N GAI+RSA       +I     
Sbjct: 192 DASAADAHELVTNTDNQTAAHKQASLVVLLDHVVDEGNFGAIVRSAEVVGASCVIIANAR 251

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             S      K+++GA+ H+P +++ NL  A+ ++   GF  IG S  +++ +       K
Sbjct: 252 CASVGVGAYKTSAGAVLHMPIVQVVNLARAIDELKEHGFWVIGASEHAQQTVWDAPFTGK 311

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + LI+G+E  G+    Q+    +  L   G I++LNV+ AA V  Y     
Sbjct: 312 VCLIMGSEENGISSLVQKKCDFICKLPQRGRIESLNVAQAATVMCYEWMRQ 362


>gi|229819278|ref|YP_002880804.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
           DSM 12333]
 gi|229565191|gb|ACQ79042.1| RNA methyltransferase, TrmH family, group 3 [Beutenbergia cavernae
           DSM 12333]
          Length = 324

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 120/255 (47%), Gaps = 14/255 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVK 94
           +S    Q     + G ++V  AL    P+  ++ + +  +A  R+     +      P+ 
Sbjct: 72  RSGTQRQRGTEVIGGRNSVLEALRARIPATTLY-VASRVDADDRIREILRIGTGRALPLI 130

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147
                 +D++    AVHQG+ L   P        +           L++ LD + DP N+
Sbjct: 131 ETTKTELDRLAD-GAVHQGVVLAVPPYDYAEPAELLEAAERSGTPALVIALDSITDPRNL 189

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+LRSA AF   G++   R S   +A   K+++GA   +P  R +NL  ALQ+  + G 
Sbjct: 190 GAVLRSAGAFGAHGVLVPARRSAGVTAAAWKTSAGAAARVPVARATNLVRALQEYQAAGC 249

Query: 208 QTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +GL  D    + +  + +  + L++G+EGKGL    +ET   +A + +   +++LN S
Sbjct: 250 FVVGLDGDGPGMVGDLPVADGPVVLVVGSEGKGLSRLVRETCDVVAAIPIASSVESLNAS 309

Query: 267 NAAAVALYITQNHFA 281
            AA++ALY      A
Sbjct: 310 VAASIALYEVARRRA 324


>gi|332652352|ref|ZP_08418097.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332517498|gb|EGJ47101.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 278

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 8/258 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     +S+   +           +S AL    + +  L  +++  A          
Sbjct: 18  YTQLTHAQLRSQRDPEKGIFIAESGKVISCALKAGCQPLSCLTESRHLPALTQLLPPPWD 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P+ T P   + ++ G E     L     P L    +  R+++ L+VL+++ D  NIGA
Sbjct: 78  NIPIYTAPRDVLARLTGYELTRGMLCAMRRPPLPSPEEICRSARRLVVLENITDSTNIGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHS 204
           I RSA A   DG++ +            + + G +  IP+  +           +  + S
Sbjct: 138 IFRSAAALGMDGVLVSSSCCDPLYRRSVRVSMGTVFQIPWTWLHGDAFQWPQPGIATLRS 197

Query: 205 WGFQTIGLSS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF T  ++  D+   +E  +  D  K+A++LG+EG GL  +T       A + M   + 
Sbjct: 198 LGFSTAAMALTDNSISIEDPVLADAEKLAIVLGSEGNGLCEETIAHCDYTARIPMYHGVD 257

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A AV  +  +  
Sbjct: 258 SLNVAAAGAVIFWQLRAR 275


>gi|153813024|ref|ZP_01965692.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
 gi|149830826|gb|EDM85916.1| hypothetical protein RUMOBE_03432 [Ruminococcus obeum ATCC 29174]
          Length = 258

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 6/256 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +   NQK++   +       G      A   P   I ++   ++ L   +   
Sbjct: 6   QNTQVKNIIKLNQKAKARREQGLFIAEGRKMFLEA---PDDWIEKIYVAESMLEDEEVMK 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDP 144
            +   F    V      ++   +   QG+            D ++    LLMVL+ + DP
Sbjct: 63  KV-RRFSWDAVENGVFRQMCDTQ-TPQGILTVLRQPSYELEDLLKEEKPLLMVLEDLQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G I+R+       G+  TK      +  + ++  G++  IP+  + ++    QK+  
Sbjct: 121 GNAGTIIRTGEGAGVSGVFLTKTCVDITNPKVIRATMGSVYRIPFFYVEDVVSLKQKLQG 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +      K   ++E   D  A ++G EGKGL  +  + A  +  + M G +++LN
Sbjct: 181 RGIRFLAAHLQGKNSYDRESYEDGTAFLIGNEGKGLTDQAADAADCLIRIPMCGQVESLN 240

Query: 265 VSNAAAVALYITQNHF 280
            + AA + +Y      
Sbjct: 241 AAMAAGILMYEAARQR 256


>gi|328554485|gb|AEB24977.1| RNA methylase [Bacillus amyloliquefaciens TA208]
          Length = 248

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 112/268 (41%), Gaps = 22/268 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K+          +D+KK+ +  ++ +         + G H    AL +      
Sbjct: 2   KRIDSAKNQKV-------KDWKKLHTKKERLK----TNTFLIEGEHLAEEALKSKGTVKE 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L+  ++A+      A+L    P   +       +   E   +        +     D +
Sbjct: 51  ILVKDESAIP-----ADLDMSIPCYVLSEDAFSAVTETETPQR--IAAVCHMPEEKPDPL 103

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +    L+++D V DP N+G ++R+A A   D ++     +   S    +SA G+  HIP 
Sbjct: 104 K---RLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPI 160

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++   L + + ++ S G    G + ++    +     +  ALI+G EG G+     +   
Sbjct: 161 LKRP-LDEFIDELKSQGVAIYGTALENGAVYQSVKPEESFALIVGNEGAGVDAGLLQKTD 219

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 220 LNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|304373038|ref|YP_003856247.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
           HUB-1]
 gi|304309229|gb|ADM21709.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma hyorhinis
           HUB-1]
          Length = 225

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 11/228 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++ G +++  A+ N    I ++  TK     +  + NL + + V  V    +DK+  K  
Sbjct: 4   YICGKNSLLDAIKNNV-PIKKIYLTK-----IVPNLNL-NTYQVHIVEKSFLDKLA-KGI 55

Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG   E   +    ++++   N + ++VLDH+ D HN+GAI+RSA A     II  K 
Sbjct: 56  NHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKD 115

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226
                +  + + +SG    I +I +++L    +K+    F     S S + KPL+Q + N
Sbjct: 116 NCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASSLSKTAKPLDQIVFN 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A++LG+E KG+       +  + ++ M G +++LNVS AA + L+
Sbjct: 176 QPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223


>gi|320547387|ref|ZP_08041676.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447983|gb|EFW88737.1| TrmH family RNA methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 246

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 107/231 (46%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A    + +   +   ++   R++  +N      V  V P+ + ++
Sbjct: 24  REQSYLIEGWHLFEEA-EKANAEFLNIFVLEDFADRVEHMSN------VTFVTPEVLKEL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A  + P  +    +   +VL+ V DP N+G ++R+A A   DG++ 
Sbjct: 77  TDS-KTPQGIIAEVAMPILPLANL--KAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           + + +   +    +S  G+  H+P  R +N+ +A + + + G   I  + S      +  
Sbjct: 134 SDKSADIYNQKTLRSMQGSHFHLPVWR-TNVYEACETLQNLGVPIIATTLSKDSVDYKTV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   AL++G EG G+  K    A  +AH+ MPG  ++LNV+ A  + L+
Sbjct: 193 KHDGNFALVMGNEGNGISNKMTNQADVLAHIIMPGQAESLNVAVATGIVLF 243


>gi|257462508|ref|ZP_05626920.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060164|ref|ZP_07924649.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313685840|gb|EFS22675.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 238

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 18/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGK 107
           + GV+ V   LNN  + I +L   K     +              +     +        
Sbjct: 4   VIGVNPVLEVLNNREKTIEKLEVYKGVRGEILQKIQRLASERNVKIFYTNKKV------- 56

Query: 108 EAVHQGLALETAPLLS-----PTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               QG  +              L+  A R+  +L++LD + DP N GA++RSA  F  D
Sbjct: 57  -ENSQGFCIFLTDYDYYQDFDEFLERMAGRSQSILLMLDEIQDPRNFGALIRSAEVFGVD 115

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  +R S   +  + K+++GA+E++P I+++NL++A++K+    +   G + +++   
Sbjct: 116 GILIPERNSVRINETVVKTSTGAIEYVPIIKVTNLSNAIEKLKKIDYWVYGAAGEAELSC 175

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++E    K+ LILG EG GLR K +E    +  + M G I +LNVS A  + L
Sbjct: 176 QEEQYPKKVVLILGNEGTGLRKKVREHCDKLIKIQMRGKINSLNVSVAGGILL 228


>gi|300361215|ref|ZP_07057392.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353834|gb|EFJ69705.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 253

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 112/257 (43%), Gaps = 12/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K ++   QK ++  + +   + G H V  AL N    ++ +L T  AL +L    
Sbjct: 8   NNPTIKSLRKLEQK-KYRKKTQTYLIEGFHLVEEALKNHENYLY-ILGTSAALVKLTAHY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     ++      I + +      Q + +   P+  P   +    +  +VLD++ DP 
Sbjct: 66  KLKDDKVIQITD--AIAEHLSSTKNSQDIFM-VLPINQPKSFSFEYGK-WVVLDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG++ ++      +  + +S  G+  HI  ++   L  A+      
Sbjct: 122 NVGTIIRTADAAGFDGVVLSEESVDLYNPKVQRSMQGSQFHIQIVQNPILA-AISSFKEN 180

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G        D + K L   I   ++AL++G E  G      ETA    ++ + G  ++LN
Sbjct: 181 GIPVYVSILDKTAKSLNNCISVPQLALVIGNEAHGASKDVIETADKKIYIPIKGKAESLN 240

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 241 AAVAAGIMIY----HFS 253


>gi|148544445|ref|YP_001271815.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|184153809|ref|YP_001842150.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363127|ref|ZP_03847262.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682767|ref|ZP_08162283.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148531479|gb|ABQ83478.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|183225153|dbj|BAG25670.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071845|gb|EEI10133.1| RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324977117|gb|EGC14068.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 258

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 17/272 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E++ S+ + H        +D+KK+Q+     +   Q     L G H V  A +    ++ 
Sbjct: 2   EQLTSIHNQHV-------KDWKKLQT----KKARRQTGTYLLDGWHLVQEA-SKAGIELL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +++ T   LA       + +      V  + +  I       QG+A   A   S  L A 
Sbjct: 50  EVVGTAEQLAAHPELEGMANAT--YEVTEEIMKHITDT-VTPQGIAAVVALPDSHRLPAG 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 + LD V DP N+G ++R+A A    G++  +R +      + +S  G+  H+  
Sbjct: 107 PLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGSQFHLQM 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +L   +    S      G   +   K        D  ALI+G EG+G+        
Sbjct: 167 FE-GDLRKWIDDFKSINAPVYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGMSDDLLSQT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T   ++ M G  ++LNV+ +A + ++    + 
Sbjct: 226 TDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257


>gi|81428990|ref|YP_395990.1| putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610632|emb|CAI55683.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 253

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 109/275 (39%), Gaps = 28/275 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++ KI + K     K +R                   +     L G H V  A
Sbjct: 1   MEYIQSNQNTKIKAAKKLTVKKNQR-------------------KENTYLLEGWHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + N +  I Q+ AT+  +            F +       + + + +    QG+      
Sbjct: 42  IQNKA-VIRQVFATEKYVDERALRGLYDDTFEI----APEVAQHLSETKAPQGIFAVVEM 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +P  + +    LL  LD V DP NIG ++R+A A    G++         +  L +S 
Sbjct: 97  SETPMPEKLTGRYLL--LDAVQDPGNIGTMIRTADAAGFAGVVLGNGSVDLYNPKLLRSM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKG 239
            G+  H+P  +  NL D ++K +S      G   + +    +   K   +ALILG EG G
Sbjct: 155 QGSHFHLPIYQ-GNLIDWMKKFNSQDVPVYGTELNPEAISYQDVPKTADMALILGNEGNG 213

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +        T   ++ +PG  ++LNV+ AA + ++
Sbjct: 214 VAKDVLAATTQNLYIPIPGNAESLNVAVAAGILMF 248


>gi|56750360|ref|YP_171061.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56685319|dbj|BAD78541.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 258

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++  +Q ++   Q     L G H +  A+      + Q+ AT     +   
Sbjct: 4   SRQNPLTKQIRQLHQ-AKGRRQMGAFLLEGTHLLQEAIATNW-PLLQVCATPAWQNQHPQ 61

Query: 84  D-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    P +TV    +  +        G+    A    P      ++ LL+ ++ + 
Sbjct: 62  LWQQAIQAAPEQTVSDDLLAYLC-TTVNPDGVVAIAA--RQPQRQPPTSASLLIAVETLQ 118

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A   DG+  T      +   + ++++G    +P    ++L   L+  
Sbjct: 119 DPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSW 178

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G+Q +     +   L Q        L+LG EG GL P     A S   +     +++
Sbjct: 179 QQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVES 238

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ AAA+ LY  +   
Sbjct: 239 LNVAIAAALLLYEARRQR 256


>gi|88803487|ref|ZP_01119012.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
 gi|88780499|gb|EAR11679.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
          Length = 254

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 12/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+ + S  + ++   K     L ++ N            VP + ++++  K
Sbjct: 11  IFGLRAIIEAIESGS-TLNKIYLQKELRGSLFYELNQLIKEKGITTSLVPIEKLNRL-SK 68

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG   + +P+    L+ +           L ++LD ++D  N GAI+R+A     +
Sbjct: 69  NGNHQGAVAQISPVEFYDLEELIEKTLESNKVPLFLLLDQLSDVRNFGAIIRTAECTGVN 128

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K  S   +A   K+++GA   IP  ++ ++ DAL  + +   +T+  +  ++  L
Sbjct: 129 GIIIQKDGSAPVNAETIKTSAGAAFKIPICKVDHIKDALYILQAAEIKTVAATEKTEDVL 188

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                N  IA+++G+E +G+ P   +     A L + G I +LNVS A    LY T    
Sbjct: 189 YDINLNQPIAIVMGSEQRGINPSILKMVDYKAKLPILGDIASLNVSVACGAFLYETIRQR 248


>gi|227543952|ref|ZP_03974001.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909702|ref|ZP_07127163.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227186068|gb|EEI66139.1| RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300893567|gb|EFK86926.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 258

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 109/272 (40%), Gaps = 17/272 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E++ S+ + H        +D+KK+Q+     +   Q     L G H V  A +    ++ 
Sbjct: 2   EQLTSIHNQHV-------KDWKKLQT----KKARRQTGTYLLDGWHLVQEA-SKAGIELL 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +++ T   LA       + +      V  + +  I       QG+A   A   S  L A 
Sbjct: 50  EVVGTTEQLAAHPELEGMANAT--YEVTEEIMKHITDT-VTPQGIAAVVALPDSHRLPAG 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 + LD V DP N+G ++R+A A    G++  +R +      + +S  G+  H+  
Sbjct: 107 PLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGSQFHLQM 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +L   +    S    T G   +   K        D  ALI+G EG+G+        
Sbjct: 167 FE-GDLRKWIDDFKSINAPTYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGMSDDLLSQT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T   ++ M G  ++LNV+ +A + ++    + 
Sbjct: 226 TDNLYIPMRGEAESLNVAISAGILMFQLNQNL 257


>gi|225026975|ref|ZP_03716167.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
 gi|224955711|gb|EEG36920.1| hypothetical protein EUBHAL_01231 [Eubacterium hallii DSM 3353]
          Length = 257

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 98/257 (38%), Gaps = 10/257 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K + +  + ++   + +   + G          P  +I +   T+    +   + 
Sbjct: 6   SNAKVKNIMNLKKSAKARKKEKCFLVEGPRMFFEI---PKDRIEECYLTEEFEDKYAEEL 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVND 143
           N  H      +  + + K +      QG+            + +    +    +L+++ D
Sbjct: 63  NGWH----YELISENVCKHLSDTKTPQGVIAVVRRTEPSIEELLHKEKNPCFFLLENLQD 118

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A      GII  +      +  + +S  GA+  +P++   +L + + ++ 
Sbjct: 119 PGNLGTIVRTAEGAGVTGIIMNRETVDIYNPKVIRSTMGAIFRVPFVIADSLPEVIFQLK 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G               ++   D  A ++G EG GL  +    A     + M G +++L
Sbjct: 179 QNGVSVYAGHLKGDV-FYKQDYRDGSAFLIGNEGNGLTDEITALADYKIKIPMKGKVESL 237

Query: 264 NVSNAAAVALYITQNHF 280
           N + +A + +Y T    
Sbjct: 238 NAAVSATILMYETMRQR 254


>gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 271

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 8/263 (3%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DS       N++  K +     K ++  +     + G+  V  A+     ++     ++N
Sbjct: 9   DSMEIITSLNNKWIKTVSQLRLK-KYRDKNNLFIMEGIRLVEEAVKLKYSEVVC-FISEN 66

Query: 77  ALARLDWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRN 131
              +      + +     + +  V  + ++K+ G +   QG+        ++      +N
Sbjct: 67  VTEKERIQNLIKNGNLLKWKILFVSEKVMNKLSGTKHT-QGIVAIVKKRCINLGTLKYKN 125

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++  + LD V DP N+G I+R+A A   D +I +K  +   S    +S+ G++  IP + 
Sbjct: 126 NERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVT 185

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             ++ + ++  +      +G S    +P  Q   +     I G EG G+  K    +   
Sbjct: 186 DVSIDELIKWKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGISQKILNISDKK 245

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
            ++ +   +++LNVS A AV L+
Sbjct: 246 IYIPLKSNVESLNVSIATAVILF 268


>gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4]
 gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4]
          Length = 261

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 119/275 (43%), Gaps = 28/275 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI   K+E++               +++KK+QS     R   +     + G H +  A
Sbjct: 7   MELILSTKNERV---------------KNWKKLQS----RRGRQKAGAYLIEGFHLIEEA 47

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N +  I +++ ++  +     + +      + T     I K++ +    QG+      
Sbjct: 48  LKNHA-IILEIMISEEVVVGDIPEFDEAKQVEIST----EIAKLLSETETSQGIFAVVKK 102

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +    LD    ++  + LD+V DP N+G ++R+A A    G++  K      ++ + +S 
Sbjct: 103 I--DQLDKPILTKPFLFLDNVQDPGNVGTMVRTADAAGFGGVVLGKGSVDLYNSKVLRSM 160

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKG 239
            G+  H+P  +  +L +         F   G   + +    +EI+   +  L++G EG G
Sbjct: 161 QGSHFHLPVYQ-GDLNEWFDLFFELEFPVFGTELNEEAVSYREIEPQAVYGLVMGNEGNG 219

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  +  T   ++ + G  ++LNV+ AA + ++
Sbjct: 220 MAAELLKRTTKNLYIPIVGQAESLNVAVAAGILMF 254


>gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 258

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 31/280 (11%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I+ K+++ I   +  H +K RR  R +                    + G H V  AL  
Sbjct: 7   ITSKQNQSIKEWRKLHTSKGRRKARAF-------------------LIEGDHLVQEALK- 46

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
               +  L+AT   L   +   +  H       P   + + + +    QG+         
Sbjct: 47  AGLPLQALMATPAYLGDHEELFDQDHCDTYLLTP--GLAQYLSQTQQDQGVFAVVESKQK 104

Query: 124 P-TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           P +LD   +   L++LD + DP N+G ++R+A A   D +I  +      +  + ++  G
Sbjct: 105 PASLD--PSWHRLLLLDAIQDPGNLGTMIRTADAAGFDAVILGQGCVDPYNDKVLRATQG 162

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLR 241
           ++ H+P I   +L  A+  + +     +  +      +  ++  +DK+ALI+G EG G+ 
Sbjct: 163 SIWHLPVIHY-DLKAAIPALQATKIPVLATALHKDAQIYSDLKLDDKVALIMGNEGAGVA 221

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + A    ++ M G  ++LNV+ A  + L+    HF 
Sbjct: 222 GDLIQAADHSVYIPMLGQAESLNVAVATGILLF----HFN 257


>gi|222151576|ref|YP_002560732.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
          Length = 246

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 36/282 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I   +++KI  +   H      N +D KKMQ                + G H V  A
Sbjct: 1   MEIIESIQNQKIKQIAKLH------NRKDRKKMQ-------------QFIIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +N+       L    + L     +A +        +  +  +K+   EA  QG+      
Sbjct: 42  VNSNIDIEMILTVNPDRLT----EAMVAGSKQQYEITFKVAEKLSQTEA-PQGIYAVCNM 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +  R    ++ LD + DP N+G I+R+A A   D +I  K      +  + +++
Sbjct: 97  KDGKDAELNR----VIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKGTVDIYNDKVLRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP I +    D  +    +     G S +  +  ++ I +D   ++LG EG+G+
Sbjct: 153 QGSVFHIPVIEM----DFDEVSSKFNGTIYGTSLEEARDYKEVIPSDNFMIVLGNEGQGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            P+         ++ + G  ++LNV+  A + +Y    HF K
Sbjct: 209 NPEILSATDENLYIPIYGRAESLNVAVCAGILMY----HFVK 246


>gi|328949218|ref|YP_004366555.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           succinifaciens DSM 2489]
 gi|328449542|gb|AEB15258.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           succinifaciens DSM 2489]
          Length = 258

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 25/252 (9%)

Query: 51  LY-GVHTVSAALN-----NPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTID 102
           +Y G H V   +       P     ++  +K    R+    +L     F V  V  + +D
Sbjct: 5   IYTGFHAVEEKVKLYSVSKPKEISLKIFYSKPG-PRIKKIISLAKDSNFEVSLVNEKELD 63

Query: 103 KIVG----KEAVHQGLALETAPL---------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            +V         H+G+ L              L   +     + +++VLD V DPHN+GA
Sbjct: 64  SMVSSLPETARDHRGIILLVEGEKENSKNQIQLEQWITCCPENAVVIVLDSVTDPHNVGA 123

Query: 150 ILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           ILRS   F    ++     S   + + ++A++++GA   +   ++ NL  A+Q + S GF
Sbjct: 124 ILRSCDQFGASLMVVPDHRSADINNNEIIARASAGASSWVDVAKVPNLVRAVQILKSAGF 183

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G  +     L +     K  +I+G+EG G+    QE    +  +   G I +LNVS 
Sbjct: 184 WIYGADA-GGTTLSKIKFPKKTCIIMGSEGSGIARLLQEQCDEIVSIPTCGKIDSLNVSV 242

Query: 268 AAAVALYITQNH 279
           AA V LY     
Sbjct: 243 AAGVLLYEAYRQ 254


>gi|330723348|gb|AEC45718.1| tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 225

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 11/228 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           ++ G +++  A+ N    I ++  TK     +  + NL + + V  V    +DK+  K  
Sbjct: 4   YICGKNSLLDAIKNNV-PIKKIYLTK-----IVPNLNL-NTYQVHIVEKSFLDKLA-KGI 55

Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG   E   +    ++++   N + ++VLDH+ D HN+GAI+RSA A     II  K 
Sbjct: 56  NHQGFVAEIENVKYFPIESIFKDNPKRILVLDHIQDNHNLGAIIRSANAAGIKHIILPKD 115

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226
                +  + + +SG    I +I +++L    +K+    F     + S + KPL+Q + N
Sbjct: 116 NCAKINDSVIRISSGGFVGIKFILVNSLLATFEKLKKHNFWIYASALSKTAKPLDQIVFN 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              A++LG+E KG+       +  + ++ M G +++LNVS AA + L+
Sbjct: 176 QPSAIVLGSEAKGISKSLLNQSDEIFYIPMQGTVQSLNVSVAAGIILF 223


>gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
 gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
 gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
 gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68]
 gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
 gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
 gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0082]
 gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
 gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
 gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
 gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68]
 gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
 gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
 gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecium TX0082]
          Length = 254

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  + E   L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKEEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +                 V  + +D +       QG+    A 
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAANKEISTFLVSDEVMDAVSDL-PTPQGILAVMAL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TAEGTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +LT+ +  M   GF   G    +    L++  K+D  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|146319366|ref|YP_001199078.1| rRNA methylase [Streptococcus suis 05ZYH33]
 gi|146321571|ref|YP_001201282.1| rRNA methylase [Streptococcus suis 98HAH33]
 gi|253752395|ref|YP_003025536.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84]
 gi|253754221|ref|YP_003027362.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7]
 gi|253756155|ref|YP_003029295.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407]
 gi|145690172|gb|ABP90678.1| rRNA methylase [Streptococcus suis 05ZYH33]
 gi|145692377|gb|ABP92882.1| rRNA methylase [Streptococcus suis 98HAH33]
 gi|251816684|emb|CAZ52325.1| SpoU rRNA Methylase family protein [Streptococcus suis SC84]
 gi|251818619|emb|CAZ56453.1| SpoU rRNA Methylase family protein [Streptococcus suis BM407]
 gi|251820467|emb|CAR47189.1| SpoU rRNA Methylase family protein [Streptococcus suis P1/7]
 gi|292558998|gb|ADE31999.1| rRNA methyltransferase [Streptococcus suis GZ1]
 gi|319758800|gb|ADV70742.1| rRNA methylase [Streptococcus suis JS14]
          Length = 246

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 115/275 (41%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K +  +  +K     K R +                     +  + G H +  A
Sbjct: 1   MEIIRSKANHLVKQVKKLQQKKYRTS---------------------SYLIEGWHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +  I  +   +    ++   AN      V  V P+ + ++       QG+  + A 
Sbjct: 40  MEAGAN-IEHIFVVEEYFEKVAGLAN------VTVVSPEIMQELADS-KTPQGVVAQLAL 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 + +      +VL+ V DP N+G ++R+A A   DG+  + + +   +  + +S 
Sbjct: 92  PSQRLPETLDGK--FLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+  ++  L  + S   Q +  +  S+    +EI      AL++G EG+G
Sbjct: 150 QGSHFHLPVYRMP-ISSILTALKSNQIQILATTLSSQSVDYKEITPHSSFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + A  + H+ MPG  ++LNV+ AA + L+
Sbjct: 209 ISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243


>gi|269123132|ref|YP_003305709.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
           moniliformis DSM 12112]
 gi|268314458|gb|ACZ00832.1| RNA methyltransferase, TrmH family, group 3 [Streptobacillus
           moniliformis DSM 12112]
          Length = 232

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 111/231 (48%), Gaps = 19/231 (8%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G++ V   L +    I +L   K       +   +        +     +        + 
Sbjct: 6   GINPVIEILKS-QTTIEKLEIYKGINKGHIKQLLELASKRNLKIFYTDKR--------DD 56

Query: 110 VHQGLALETAPLLSP-------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             QG+    +              + +++   +++LD + DP N GAI+RS   F   GI
Sbjct: 57  NSQGVVAYISEYDYYIDFSAFLEKELMKDESTIVILDQIQDPRNFGAIIRSCECFGVSGI 116

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I   R +   +  + KS++GA+EH+  ++++N+ D+++K+  +G+   G  ++ +K   +
Sbjct: 117 IMQDRNNVKVTETVVKSSTGAIEHVDIVQVTNIADSIEKLQKYGYFVYGAEANGEKFYYE 176

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E    K AL+LG+EGKG+R + +E+  S+  +H+ G I +LNVS AA + L
Sbjct: 177 EKYPKKKALVLGSEGKGMRKRVRESCDSILKIHLKGEINSLNVSVAAGILL 227


>gi|313639754|gb|EFS04505.1| RNA methyltransferase, TrmH family, group 3 [Listeria seeligeri FSL
           S4-171]
          Length = 190

 Score =  209 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRS 153
           I+K+V    VHQG+A + A      LD + N+          ++LD + DPHN+G+I+R+
Sbjct: 1   IEKVVS--GVHQGVAAQVAAYQYAELDDLFNAAEAKGEMPFFIILDELEDPHNLGSIMRT 58

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A +    GII  KR +   +  +AK+++GA+E++P +R++N+   ++++   G    G  
Sbjct: 59  ADSVGAHGIIIPKRRAVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTD 118

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +           +  +A+++G+EG G+    +E    + HL M G + +LN S AA++ L
Sbjct: 119 AKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLL 178

Query: 274 YITQN 278
           Y    
Sbjct: 179 YEVYR 183


>gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 254

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 11/238 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +    F+ G  +V  AL +     + ++     +     D  + H         + I 
Sbjct: 23  RYEEGLFFVEGTTSVLEALKSDFEIEYIVMGEGVKIDIPKGDFEIAH-------TTERIF 75

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           K +      Q +              ++   + ++ D++ DP N+G I+R+A AF    I
Sbjct: 76  KKLSDTVTPQMVMAIIKIPKYEENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAI 135

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T        +  + +++ G++ HIP I  ++    L K+   G +       ++K + +
Sbjct: 136 FTINNCVDIFNPKVLRASMGSIFHIPVIATTS--QILLKLKRRGIKVFATHLKAQKLVHE 193

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +DKIA +LG E KG+     +       + M G  ++LNVS AA++ LY +Q   
Sbjct: 194 CNISDKIAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 249


>gi|312870534|ref|ZP_07730652.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
 gi|311093931|gb|EFQ52257.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
          Length = 257

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 112/272 (41%), Gaps = 18/272 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E++ S+ + H        +++KK+Q+     +   Q     L G H V+ A+     ++ 
Sbjct: 2   EELTSVHNQHV-------KNWKKLQT----KKFRRQSGEYLLDGWHLVNEAVK-AGNQLR 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL+ T + LA       +        V P+ +  +       QG+A       +  + A 
Sbjct: 50  QLIGTADQLA--AHQDLVARAAEAYVVTPEIMQHVTDT-VTPQGIAAVVDLPDAHRVPAN 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD V DP N+G ++R+A A    G++   R +      + +S  G+  H+  
Sbjct: 107 IQGA-WLLLDRVQDPGNVGTMVRTADAAGFTGVVVGDRSADIFGPKVVRSMQGSQFHLTL 165

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   +L   +Q     G    G   + + K           ALI+G EG+G+     +  
Sbjct: 166 LE-GDLHKWIQDFKQLGAPVYGTQLNPAAKNFRDVHPGQTFALIMGNEGQGMAADLLKET 224

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T+  ++ M G  ++LNV+ +A + ++      
Sbjct: 225 TANLYIPMRGDAESLNVAVSAGILMFQLNREL 256


>gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 266

 Score =  209 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 12/238 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             + +  F+ G+++V  AL++  +  + ++         D +      F +  +  +   
Sbjct: 23  RYEEKLFFVEGLNSVKEALDSDFKVEYVVVGE-------DVEFEFKGDFKLIRIANKLFK 75

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           KI       Q +       +    D ++   + ++ D+V DP N+G I+R+A AF  D +
Sbjct: 76  KISDT-VTPQKIMAIVRMPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGADAV 134

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T        +  + +++ G++ HIP I  +N  + L K+   G +        +K + +
Sbjct: 135 FTINNSVDIYNPKVLRASMGSIFHIPVIATAN--EVLYKLKGKGVKVFATHLKGEKFVHE 192

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   A ILG E +G+     +       + M G  ++LNVS AAA+ LY +Q   
Sbjct: 193 VEIDKGTAFILGNEARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQR 248


>gi|261749353|ref|YP_003257038.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497445|gb|ACX83895.1| putative tRNA:rRNA methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 249

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 18/246 (7%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTIDK 103
            +YG+H +  A+ +  R I +L        +           +     P+  VP     +
Sbjct: 6   IIYGIHPLIEAIQS-KRSISKLFFQIGWKKKCNPYYKKLISLSKRENIPIHIVPKNKFHQ 64

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +      HQG+    +P+ + +++ +         + LL++LD + D  N G+I+R+A  
Sbjct: 65  L--NNKNHQGVFALLSPIETYSIEDLLPIFYEKGKNPLLLILDRITDVRNFGSIIRTAAC 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II   +Y+    +   K++SGAL  +P  +  N+   ++ +   G + +  +  S
Sbjct: 123 AGVDAIIIPNKYTAMICSDSIKTSSGALFKVPICQEKNIKKTIEYLMKSGLKIVSATEKS 182

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI- 275
                +   +   A+ILG E  G+ PK  E     A +     I +LNVS A  + LY  
Sbjct: 183 NIYWYKIDFSGPTAIILGNESNGICPKYLEITYEKAKIPAIHGISSLNVSVACGIILYEV 242

Query: 276 -TQNHF 280
             Q  F
Sbjct: 243 FRQREF 248


>gi|255022090|ref|ZP_05294094.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968448|gb|EET26006.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 250

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 122/241 (50%), Gaps = 11/241 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDK 103
             +  GVH V+AA++    ++ QL   +             A   H    +      I++
Sbjct: 3   EDWAIGVHAVAAAIDAG--EVEQLWVAREREEDRRIREVVAAAELHGIRPRWAATAEINR 60

Query: 104 IVGKEAVHQGLALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + G    HQGL        AP L+  L+ +    LL++LD + DPHN+GA LRSA A   
Sbjct: 61  L-GGGPQHQGLVARLLARPAPTLAQVLEDIPAPGLLLILDGILDPHNLGACLRSAEAAGA 119

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + ++  K ++   +A + K+A+GA   +P + ++NL  ++  +  +G+   GL+ ++ + 
Sbjct: 120 NAVVLPKDHACPVNATVRKAAAGAASRLPIVVVTNLVRSMVGLQEYGYWIAGLAGEASQD 179

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +      +AL+LG+E KGLR   +E    + H+ M G +++LNVS A A+AL+  +  
Sbjct: 180 LYEADLRGPLALVLGSEEKGLRRLVREHCDFLWHIPMCGAVESLNVSVAGALALFEARRQ 239

Query: 280 F 280
            
Sbjct: 240 R 240


>gi|322377611|ref|ZP_08052101.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
 gi|321281376|gb|EFX58386.1| SpoU rRNA Methylase family protein [Streptococcus sp. M334]
          Length = 252

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 110/275 (40%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A+ P       V    +  +   +   QG+      
Sbjct: 46  VQAGV-TIEKIFALENYRDQL---ASFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGEADFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+S+    L+K    G   +  +        +E+   +   L++G EG+G
Sbjct: 156 QGSHFHLPIYRMSSQA-LLEKAKKAGISVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 215 ISSLMAESADQLVHISMKGQAESLNVAVAAGILIF 249


>gi|313113411|ref|ZP_07799000.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624138|gb|EFQ07504.1| RNA methyltransferase, TrmH family [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 275

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 106/258 (41%), Gaps = 8/258 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     ++R   +           ++ AL+     +  L+  K              
Sbjct: 18  YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGYTPLSLLMERKQITGPAADILTRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   +T+  + G E     L     PL     +  RN++ + VL+ + D  N+GA
Sbjct: 78  DAPVYTADRETLASLTGFELTRGVLCAFRRPLPRSVEEVCRNARRVAVLEGIVDSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204
           I RSA A + D ++ T            + + G +  +P+ +I         + + ++HS
Sbjct: 138 IFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGIAQLHS 197

Query: 205 WGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF+T  ++ SD    ++    +   K+A++LG EG GL   T         + M   + 
Sbjct: 198 LGFKTAAMALSDRSVSIDDSALSAEPKLAIVLGTEGDGLAHSTIAACDYTVKIPMSHGVD 257

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A+AVA +   N 
Sbjct: 258 SLNVAAASAVAFWQLGNR 275


>gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 262

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 112/270 (41%), Gaps = 16/270 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S+++    ++R+ HR           ++   +   L L G H V  A       +  L
Sbjct: 2   ITSIRNPLIKQIRKLHR-----------TKGRREHNLLLLEGTHLVETAYKENC-SLITL 49

Query: 72  LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T+   AR    W++        + V    +  +        G+   TA     T + +
Sbjct: 50  CYTEEWQARYPQLWESVSKRVKRSELVSADVLASMT-TTVNPDGVVA-TARFQPRTEEEI 107

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + +L ++++ + DP N+G I+R+A A   D I  +      ++  + ++++GA   +P 
Sbjct: 108 TDFRLGLIIERLQDPGNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVLRASAGAWFQVPI 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S+LT  ++K  + G   +    ++ +   Q        ++LG EG GL       A 
Sbjct: 168 FVTSDLTTVIKKHKNHGVNIVATLPNATETYWQLQFTQPTLILLGNEGSGLSNSLIALAD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  + +   +++LNV+ A A+ LY  +  
Sbjct: 228 ELVSIPLSQGVESLNVAIATALLLYEAKRQ 257


>gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542]
 gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542]
          Length = 339

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 12/261 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLDWDANLP-- 88
           +     +  + +    +  + G + V  AL          + T+  A  R      +   
Sbjct: 77  RPSGRGKGPKKSGSATHEMVSGRNAVLEALRARIPVTTVYIGTRLEADDRTREILQIASG 136

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHV 141
             + +  V    +D++   ++VHQG+A++  P      +        +    L++ LD V
Sbjct: 137 RGYNLLEVTKPELDRLTD-DSVHQGVAIQVPPYEYRDPEDLLDIAAELEQPALIVALDGV 195

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GA+LRSA AF   G++  +R S   +A   K ++GA   +P  R +NLT  L +
Sbjct: 196 TDPRNLGAVLRSAGAFGAHGVLVPERRSAGVTASAWKVSAGAAARVPVARATNLTRTLLE 255

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             S G   +GL    +  +     + D I L++G+EGKGL    +ET  ++A + +   +
Sbjct: 256 YKSAGCFIVGLDGGGEVSVGDLAFSVDPIVLVVGSEGKGLSRLVRETCDAIASIPIASAV 315

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN   AA +ALY      A
Sbjct: 316 ESLNAGVAAGIALYEVAKVRA 336


>gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
 gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
          Length = 253

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 12/238 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             + +  F+ G+++V  AL++  +  + ++         D +      F +  +  +   
Sbjct: 23  RYEEKLFFVEGLNSVKEALDSDFKVEYVVVGE-------DVEFEFKGDFMLIRIANKLFK 75

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           KI       Q +       +    D ++   + ++ D+V DP N+G I+R+A AF  D +
Sbjct: 76  KISDT-VTPQKIMAIVRMPVYREEDFIKEEGVYVIADNVQDPGNLGTIIRTADAFGVDAV 134

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T        +  + +++ G++ HIP I  +N  + L K+   G +        +K + +
Sbjct: 135 FTINNSVDIYNPKVLRASMGSIFHIPVIATAN--EVLYKLKGKGVKVFATHLKGEKFVHE 192

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   A ILG E +G+     +       + M G  ++LNVS AAA+ LY +Q   
Sbjct: 193 VEIDKGTAFILGNEARGVSS--LDFVDGFIKIPMTGRAESLNVSIAAAIFLYESQRQR 248


>gi|124006094|ref|ZP_01690930.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
           ATCC 23134]
 gi|123988271|gb|EAY27924.1| RNA methyltransferase, TrmH family, group 3 [Microscilla marina
           ATCC 23134]
          Length = 246

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 17/246 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQTID 102
            F++GV +V+  + N  + I +L   +  L R         +       PV  VP   ++
Sbjct: 4   DFVFGVQSVTETI-NAGKPIDKLFIQRE-LGRNSPKVAYILEEAKKREVPVAKVPLDKLN 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           +I  K   HQG+    + +    L  +         + L+++LD + D  N GAI R+A 
Sbjct: 62  RITRK--NHQGIIAFISAVHYQPLSNIIPQLYEEGKTPLVLILDRLTDVRNFGAIARTAE 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
                 I+   R S   S+   K++SGAL ++P  R +NL   ++ +   G Q +  +  
Sbjct: 120 CAGIHAIVIPSRGSAQVSSDAMKTSSGALNYLPVCREANLEKTIEFLQESGLQIVACTEK 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + +         A+++G+E  G+       A  +A + + G I +LNVS A AV +Y 
Sbjct: 180 TSETIYAPDYTVPTAIVMGSEEDGISQALIRKADHLAKIPLQGEIGSLNVSVATAVIVYE 239

Query: 276 TQNHFA 281
                +
Sbjct: 240 AVRQRS 245


>gi|326334732|ref|ZP_08200939.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325693182|gb|EGD35114.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 251

 Score =  209 bits (532), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/239 (25%), Positives = 109/239 (45%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G+H V  A+       KIF     K AL          +  P   VP + + ++    
Sbjct: 11  IFGLHPVIEAIEAGKTIDKIFIQKGLKGALFSQLLSLVETYHLPHSYVPIEKLQRLT--R 68

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG+    +P+    L+ +           L ++LDH++D  N+GAI+R+A     +G
Sbjct: 69  GNHQGIVALLSPVEFVPLEELVLSTIESGRVPLFLILDHLSDVRNVGAIIRTAECTGVNG 128

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+  K+ S S    + K+++GA+ ++P  ++ NL DA+  +   G + +G +  +   L 
Sbjct: 129 ILLPKQGSASIGEDMVKTSAGAIFNLPLCKVDNLIDAIYYLQGSGIKVLGATEKASSLLY 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ +A+++GAE  G+     +     A L + G   +LNVS A    LY      
Sbjct: 189 DFSLSEPLAIVMGAEDTGISKGVLKVLDEKAKLPLQGETSSLNVSVACGAFLYEVVRQR 247


>gi|302390627|ref|YP_003826448.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
 gi|302201255|gb|ADL08825.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
           oceani DSM 16646]
          Length = 252

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 11/223 (4%)

Query: 51  LYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + G + V  AL+   P  KI+     ++ + +   +       PV  + P++ + +  + 
Sbjct: 11  IEGRNAVLEALSASMPLNKIYIKKGERHGVMQKIRELARSSGIPVVELDPKSFEHMA-RT 69

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              QG+   ++P    ++D +       R +  + VL+ + DP N+G+ILR+A      G
Sbjct: 70  RNPQGVIALSSPKEYVSVDDILETAERRREAPFVFVLNEITDPQNLGSILRTADCLGVHG 129

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  KR +   +  + K + GA  ++   R++N+   L+ +   G   +G   D + P  
Sbjct: 130 VIIPKRRACGVTPAVVKVSEGAAGYVNVARVTNIASTLECLKEKGLWVVGADMDGE-PYH 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +      +AL++G E KGL    +E    +  L M G + +LN
Sbjct: 189 RVDLTGPVALVIGGEDKGLGRLVREKCDLLVKLPMRGHVPSLN 231


>gi|229496145|ref|ZP_04389865.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316723|gb|EEN82636.1| RNA methyltransferase, TrmH family, group 3 [Porphyromonas
           endodontalis ATCC 35406]
          Length = 246

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 11/242 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +   ++G+H+V  AL       KI+   A  +   R           PV  VP + +++ 
Sbjct: 3   KEKIIFGIHSVQEALEAGQEIDKIYLRRALVSEEIRAIKRLAREQRIPVLEVPAERLNRF 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG     A +    L+ +           L+++L+ V D  N GAI RSA   
Sbjct: 63  T--RGAHQGCVAIIAQVSYTPLEMLVPQIFERGEDPLIVLLNGVTDTRNFGAIARSAECA 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++  +R S S SA    +++GAL  IP  R+ +++ A+  +   G Q +  +  ++
Sbjct: 121 GAHALVIAERGSVSVSADAVNASAGALMRIPVCRVPSISGAVGYLAECGLQIVVANEKAE 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                      +AL++G+E +G+ P+    AT    +   G I +LNVS AA + L+ + 
Sbjct: 181 NTYYTADLTGPLALVMGSEHEGVSPQVARLATLSVAIPQVGEIGSLNVSVAAGILLFESL 240

Query: 278 NH 279
             
Sbjct: 241 RQ 242


>gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 266

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 105/261 (40%), Gaps = 7/261 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLD 82
           ++   + ++   ++ R         + GV  V  AL +       I+     +N   +  
Sbjct: 7   DNPRIRYLKHLAKR-RFRETEGKFIIEGVRFVEEALASAMSVEAVIYSAKLFQNNRGKEL 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDH 140
            +       P   V    ++ +    A  QG+      + +   + +     QLL+++D 
Sbjct: 66  LECIYKSNVPFWEVTEPILESLSDT-ATPQGVVAVIKSVPTGLQEILTRVKKQLLVLVDG 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R++ A   D +I ++      +    ++  G+L H+P I       A +
Sbjct: 125 IQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKTLRATMGSLFHLPVIMAGEPVQAAE 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   G + +       +P+        +AL++G+E  G+    +       ++ MPG  
Sbjct: 185 LLLQAGIRLVVGMPQDCQPVYSVDLTGPVALVVGSEANGVSEGLKRLPAIPVNIPMPGHA 244

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN + AAA+ LY      +
Sbjct: 245 ESLNAAIAAAIMLYEAVRQRS 265


>gi|220910387|ref|YP_002485698.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
 gi|219866998|gb|ACL47337.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
          Length = 260

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 98/257 (38%), Gaps = 8/257 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DW 83
            +   K+M+  +Q  ++    +   L G H +  A+      +  +  T    A+   DW
Sbjct: 6   QNPLIKQMRKLHQ-GKYRRAQQQFLLEGTHLLLEAVETGY-PLEVICFTPQWQAKQAPDW 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A L     ++ V  Q +  I        G+         P L+      L + ++ + D
Sbjct: 64  LAQLEQLTRLEVVSEQVLAAIA-TTVNPDGVVALAPFQPRPPLEI---HHLGLAVETLQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A   +G++ +      E+  + ++ +G    +P     +    LQ   
Sbjct: 120 PGNLGTMIRTAAAAGAEGVLLSSDSVELENPKVLRATAGQWFRLPLSVAEDFQAELQHYR 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +     ++              +LG EG GL       A     + +   +++L
Sbjct: 180 QQGIQVVATLPQAQSNYWDVDLTCPTLFLLGNEGAGLSASVVALADRQVKIPLQPGVESL 239

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ AAA+ LY  Q   
Sbjct: 240 NVAIAAALLLYEAQRQR 256


>gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
           345-E]
 gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
           345-E]
          Length = 261

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 108/254 (42%), Gaps = 8/254 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N++  K +     K ++  +     + G+  V  A+     ++     ++N   +     
Sbjct: 8   NNKWIKTVSQLRLK-KYRDKNNLFIMEGIRLVEEAVKLKYSEVVC-FISENVTEKERIQN 65

Query: 86  NLPHP----FPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQLLMVLDH 140
            + +     + +  V  + ++K+ G +   QG+        ++      +N++  + LD 
Sbjct: 66  LIKNGNLLKWKILFVSEKVMNKLSGTKHT-QGIVAIVKKRCINLGTLKYKNNERYVFLDE 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A   D +I +K  +   S    +S+ G++  IP +   +  + ++
Sbjct: 125 VQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRSSMGSIFRIPVVTDVSTDELIK 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             +      +G S    +P  Q   +     I G EG G+  K    +    ++ +   +
Sbjct: 185 WKNETNIFFVGTSLQDAEPYTQISLSGCCMFIFGNEGNGVSQKILNISDKKIYIPLKSNV 244

Query: 261 KALNVSNAAAVALY 274
           ++LNVS A AV L+
Sbjct: 245 ESLNVSIATAVILF 258


>gi|116490953|ref|YP_810497.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|290890427|ref|ZP_06553502.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
 gi|116091678|gb|ABJ56832.1| rRNA methylase [Oenococcus oeni PSU-1]
 gi|290479823|gb|EFD88472.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
          Length = 255

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 123/277 (44%), Gaps = 24/277 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+  ++ ++               + +  +Q+   + +         L G H V  A
Sbjct: 1   MEIITSNQNSRV---------------KIWTSLQTLKGREK----SGTYMLDGWHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN  +  I  ++AT+  + +   D  +P   P   V  + + + + K    QG+  +T+ 
Sbjct: 42  LNQAA-PIQAVIATEEQMDQHLID--VPQGVPAFQVS-EEVARHIAKTNTPQGIFAQTSL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +       ++   ++LD + DP N+G ++R+A A    G+  +K  +   +  + ++ 
Sbjct: 98  PNNSFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+  ++  +L D + K+ +  +   G   S++    +  +     ALILG EG+G
Sbjct: 158 QGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPEKNFALILGNEGQG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + P+ Q   +   H++  G  ++LNV+ A  + ++  
Sbjct: 218 IDPEIQAKTSENLHINFLGKAESLNVAVAGGILMFAL 254


>gi|288818710|ref|YP_003433058.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|288788110|dbj|BAI69857.1| rRNA methylase [Hydrogenobacter thermophilus TK-6]
 gi|308752297|gb|ADO45780.1| RNA methyltransferase, TrmH family, group 3 [Hydrogenobacter
           thermophilus TK-6]
          Length = 240

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG + V  AL +       L+A  +                ++ VP   I+++ G +
Sbjct: 1   MIVYGKNPVIEALRSGKDIEKVLVAHDSHPPYQVAKLCKERGVKIQKVPRAKIEELAGTK 60

Query: 109 AVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
              QG+    +P+   +      DA++ +  ++VLDH+ DP N+G +LR+       G +
Sbjct: 61  KT-QGILAIISPINYVSSNELFKDALKKNSFILVLDHLTDPQNVGNLLRTCEVLGGVGAL 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                S   + V+ K+++G++ H+   ++ +L+ AL+     G   I +    K      
Sbjct: 120 LPTHRSSPINQVVVKASAGSVFHLKISKVPSLSKALKDFKKQGGWVISVERGGKDIRYTS 179

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           I     AL+LG+EG+G+     E +  +  + M G I +LNVS+A A+A++ 
Sbjct: 180 IPL-PCALVLGSEGEGVSKSLLEISDLVLSIPMVGKINSLNVSSAGAIAMWE 230


>gi|149019402|ref|ZP_01834764.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931272|gb|EDK82251.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 169

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 1/147 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + LL++LD + DPHN+G+ILR+A A +  G+I  K  +   + V+AK+A+GA+EH+P 
Sbjct: 19  EENPLLLILDGLTDPHNLGSILRTADATNVSGVIIPKHRAVGVTPVVAKTATGAIEHVPI 78

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R++NL+  L K+   GF T G   +   P  +     KIALI+G EGKG+    ++   
Sbjct: 79  ARVTNLSQTLDKLKDEGFWTFGTDMNG-TPCHKWNTKGKIALIIGNEGKGISSNIKKQVD 137

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
            M  + M G +++LN S AAA+ +Y  
Sbjct: 138 EMITIPMNGHVQSLNASVAAAILMYEV 164


>gi|158321000|ref|YP_001513507.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
 gi|158141199|gb|ABW19511.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
          Length = 278

 Score =  208 bits (531), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 114/285 (40%), Gaps = 33/285 (11%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           N+I+ + +  I  +K     K R  H  +                    + G+  V   +
Sbjct: 4   NMITSETNSIIKYVKSLQLKKNRMKHMQFT-------------------VEGLRIVEECV 44

Query: 62  NNPSRKIF-----QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
            +     +     ++ +T+ A   LD  A     + +  V  Q   KI   E   QG+  
Sbjct: 45  KHNGDIAYIIYSEEIYSTQGAEKLLDKIALA--GYTLYEVSSQLFSKISTTE-NPQGIMA 101

Query: 117 ETAPLLSPTLDAVRNSQ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
               + + +L+ +++ +      ++LD + DP N+G I+R+A + + D +I TK      
Sbjct: 102 VVH-MKNRSLEEIKSQKGKELFFVILDRIQDPGNMGTIIRTAESANADAVIITKGSVDPY 160

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           ++   ++  GA+ H+P I+  +    L  +     + I    D+ K       N  I +I
Sbjct: 161 NSKTLRATMGAIFHMPIIQCDD-DRWLDDLKENEVKLIAADLDTDKTYIDIDYNTSIGII 219

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +G E  G+             + + G I++LN S AA++ +Y   
Sbjct: 220 IGNEANGISEALLSKVDQRVIIPILGKIESLNASVAASILIYKAA 264


>gi|218135121|ref|ZP_03463925.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990506|gb|EEC56517.1| hypothetical protein BACPEC_03026 [Bacteroides pectinophilus ATCC
           43243]
          Length = 261

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 99/255 (38%), Gaps = 6/255 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +     ++R           G   VS A   P+ +I  + A++   AR +    
Sbjct: 7   NARVKNVIQLQTRARARKDSRQFVAEGFRMVSEA---PADRIVSIYASE-TFARCNSGYM 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPH 145
                P + V      ++       QG+            D +  ++ L ++++++ DP 
Sbjct: 63  STIQVPYEMVSDNVFAQMSDTR-TPQGILAVIKMAEYGIGDIIAHDNGLYVIVENLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R + A   DGII +       +    +S  G+L  +P++   +    L++M S 
Sbjct: 122 NLGTIIRMSEAAGVDGIIMSPNTVDIYNPKTIRSTMGSLYRVPFVYADDFAGTLEQMKSK 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G +      +      +       A ++G EG GL        ++   + M G +++LN 
Sbjct: 182 GVELYAAHLEGSVEYTEPDYTKASAFVIGNEGNGLTDAVTNICSNRIRIPMAGKVESLNA 241

Query: 266 SNAAAVALYITQNHF 280
           + AA+V  +      
Sbjct: 242 AIAASVLTFEAARQR 256


>gi|284053061|ref|ZP_06383271.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str.
           Paraca]
 gi|291572137|dbj|BAI94409.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 259

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 100/257 (38%), Gaps = 8/257 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--W 83
            +   K+++  +  ++   +     L G H V AA       I  +  T     R    W
Sbjct: 6   QNPLVKQIRQLHT-AKGRREEGLFILEGTHLVEAACAVNW-DIMAVCCTPQWEERHRDLW 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  +      + V  + I  +        G+              V  + L +VL+ V D
Sbjct: 64  ELAVKRADRTEQVSDRLIAAMT-TTVNPDGVVAIARRRDQTP---VPITSLGLVLETVQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A   +G+  +          + ++++GA   +P    S+L   L  + 
Sbjct: 120 PGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPIAVHSDLITQLSDIQ 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +   +D+     +       A++LG EG GL P     A     + + G +++L
Sbjct: 180 KQGIQIVATRADASLSYWEIDLRPPTAIVLGNEGSGLSPDLTSLADYHIRVPLLGNVESL 239

Query: 264 NVSNAAAVALYITQNHF 280
           NV+  AA+ LY  Q   
Sbjct: 240 NVAICAALILYEAQRQR 256


>gi|119963510|ref|YP_947871.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119950369|gb|ABM09280.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 269

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 103/264 (39%), Gaps = 6/264 (2%)

Query: 19  HYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           HY +   + R  DY  +   + +     +           +  AL    +        + 
Sbjct: 4   HYLESAADPRVTDYTTLTDVHLRKLREPREGMYIAESSKVLRRALAAGHQP-RSFFLAEK 62

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            L  LD         PV       +++I G       +A    P   P    + N+Q + 
Sbjct: 63  WLEDLDDVFKAHPDVPVYIGKASLLEEITGFHLHRGAMAAMHRPAPVPLATLLANAQRIA 122

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A   D ++ + R          + + G +  +P+ R+ +  
Sbjct: 123 VLEDIVDHTNVGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWP 182

Query: 197 DALQKMHSWGFQTIGLSS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAH 253
           D L ++   GF    +   D+   L+        K+AL+LG EG G+  +T         
Sbjct: 183 DHLAQLKEQGFTVAAMELTDNAVDLDDLAARKIPKLALVLGTEGAGMSEETLAAVDLAVK 242

Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277
           + M   + +LNV+ A+AVA +  +
Sbjct: 243 IPMRAGVDSLNVAAASAVAFWELR 266


>gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
           E980]
 gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
           E980]
          Length = 254

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  + E   L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKEEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+                    V  + +D +       QG+    A 
Sbjct: 42  -ASSDAEIKELFVTQRGRKEWGDWLAANKEISTFLVSDEVMDAVSDL-PTPQGILAVMAL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TAEGAPDFSGG---WLLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +LT+ +  M   GF   G    +    L++  K+D  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-QDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|297621986|ref|YP_003710123.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
           chondrophila WSU 86-1044]
 gi|297377287|gb|ADI39117.1| putative 23S rRNA (guanosine-2'-O-)- methyltransferase [Waddlia
           chondrophila WSU 86-1044]
          Length = 242

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 5/238 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            +  ++ G + +   L++   +I +    K     L           +K    Q +  +V
Sbjct: 2   QKKYWIMGKNCIETILDHSPERIIEFFTAKKDSDPLLEKVR-SKGIKIKLASKQKLFDLV 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             ++ HQ        + SP L      N +L+++LD++NDP N+GAILR+A  F  D +I
Sbjct: 61  NSDS-HQSYVALVKAVDSPDLKQFLRENHRLVLMLDNINDPQNLGAILRAAECFGVDAVI 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ 222
            +K    S +   AK+  GA E +P I +SNL + ++K    G+  +    SD   PL  
Sbjct: 120 WSKNRGCSLTPSAAKAGVGASELVPTIVVSNLAETVKKFQKSGYFAVTAEISDRASPLNA 179

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +K  LI+G+EGKG++P   + A    ++ M G I +LNVS A AV L   Q  F
Sbjct: 180 FQFPEKTLLIMGSEGKGIQPLISKLADEQVYIPMSGKIDSLNVSQATAVLLSHYQKCF 237


>gi|289167184|ref|YP_003445451.1| rRNA/tRNA methylase [Streptococcus mitis B6]
 gi|288906749|emb|CBJ21583.1| rRNA/tRNA methylase [Streptococcus mitis B6]
          Length = 246

 Score =  208 bits (530), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 111/275 (40%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---AAFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                +D  +     + L+ V DP N+G I+R+A A    G+I +++ +   S    +S 
Sbjct: 92  EEVGQVDLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSEKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+S+    L++        +  +        +E+   +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMSSQA-LLKETKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|295106719|emb|CBL04262.1| rRNA methylase, putative, group 3 [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 248

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 17/246 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPH-PFPVKTVPPQTIDKI 104
            ++ G   +  AL      I ++L   NA       D      H    V TVP +T+D  
Sbjct: 3   DYIEGKRPIIEALRT-QVPIKRILLADNAKRDGLVEDILRKAKHFDVDVTTVPRKTLDDK 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR-----------NSQLLMVLDHVNDPHNIGAILRS 153
             +   HQG+  ET P     +  +               L+++LDH+ D  N+GAI RS
Sbjct: 62  -SERGSHQGVMAETKPHAYVDITVIERAAEAYAEENGGRALVVILDHLTDAGNLGAIARS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G++   + S    A   KS++GA+ H+P  ++ NL   + ++   GF   G S
Sbjct: 121 AEAVGACGLVIPNKRSAKVDASTYKSSAGAIAHLPVAQVPNLVQVMARLKERGFWVAGAS 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +   + +     KIAL++G E +GL    +E+   +  L   G + +LNV+ A+   +
Sbjct: 181 EQTDDVIWRSNLKGKIALVMGNEAEGLSRVVKESCDFLVKLPQMGEVASLNVAQASTACM 240

Query: 274 YITQNH 279
           Y     
Sbjct: 241 YEWLRQ 246


>gi|302874885|ref|YP_003843518.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
 gi|307690498|ref|ZP_07632944.1| RNA methyltransferase, TrmH family [Clostridium cellulovorans 743B]
 gi|302577742|gb|ADL51754.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
          Length = 259

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 104/261 (39%), Gaps = 9/261 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
             L +++   K+ +   +K ++  +     + G   V  A+ + S  I  +   + AL +
Sbjct: 3   KILSKDNNLIKETRKLKEK-KYRIEKGLFLVEGFRFVEEAVKS-SFIIKSIFIDEKALEK 60

Query: 81  LDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           L             +  +P Q    I   E   QG+        +            +  
Sbjct: 61  LSDYNIETERIHANIYIIPSQIFKTISTTE-TPQGIIAVV---ENKEFAVKNEKGFYIYA 116

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+G I+R+A A    G+I ++      +    +S  G++  IP I   ++   
Sbjct: 117 DKVQDPGNMGTIIRTAHASGALGVIYSQGTVDIYNEKTLRSTMGSIFRIPVILDKDMNK- 175

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+++ + GF+ I  S D+ K       +    + +G EG G+  +    +     + MPG
Sbjct: 176 LKELKAQGFKLIVSSLDTNKNFFDVDLSQMSIIAVGNEGNGVSDELYNLSDEKVKIPMPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
             ++LNV+ AA++  +     
Sbjct: 236 GAESLNVAVAASIMAFEAVRQ 256


>gi|325108798|ref|YP_004269866.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
 gi|324969066|gb|ADY59844.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
          Length = 259

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 22/263 (8%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-- 84
           HR  KK+ S +QKS         +L+G   V   L      I +LL +  A  ++  D  
Sbjct: 4   HRSGKKLLSNHQKS---------WLWGTIAVWETLQTGRWPIRELLLSDQASQQVHEDCR 54

Query: 85  -ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLD 139
                   P +    + ++++  K   HQG+     P     LD     + ++ LL++LD
Sbjct: 55  QLAEERDIPCRIESARRLEQL-SKAKDHQGILARLGPFPYAALDEILGQLTSASLLLMLD 113

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N GAI+R+A A   +G+I   R   + S+ + +S++GA+ HIP   + NL D L
Sbjct: 114 RVQDPFNFGAIVRTAAALGVEGVIIGTREQAAISSHVVRSSAGAVNHIPICEVDNLQDTL 173

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +       Q++  + +    ++      E  +  + LI+G E +G+ P   E  ++  H+
Sbjct: 174 EVCRLARCQSLAATMNGTHAVQDIRALPEFAHSPLLLIIGNEARGVAPALLERCSTTVHI 233

Query: 255 HMPGIIKALNVSNAAAVALYITQ 277
            M G +++LN + AA + ++  +
Sbjct: 234 PMQGAVESLNAAVAAGILMFALR 256


>gi|306824475|ref|ZP_07457821.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433262|gb|EFM36232.1| SpoU rRNA methylase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 246

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 110/275 (40%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKS---------------------TYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L   A  P       V  + +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALESYRDQL---AAFPQTV---WVSEEVLLDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDFRQGK--FLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  R+ +L   +++        +  + S   K   +    +  AL++G EG+G
Sbjct: 150 QGSHFHLPIYRM-SLASFVEEAKKSNLPILATTLSKDSKDYHELSPIENFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|307709738|ref|ZP_07646189.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307619440|gb|EFN98565.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 246

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 111/277 (40%), Gaps = 37/277 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           +       KIF L + +N L      A  P       V    +  +   +   QG+    
Sbjct: 40  VQAGVTIEKIFALESYRNQL------AAFPQTI---WVSEDILLDLADSQ-TPQGIVAVV 89

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                  +D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +
Sbjct: 90  QKEEVGQVDFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLR 147

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEG 237
           S  G+  H+P  R+S+    L++        +  +        +E+ + +   L++G EG
Sbjct: 148 SMQGSHFHLPIYRMSS-QRLLEEAKKASIPVLATTLSKDSVDYRELPSIENFVLVMGNEG 206

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 207 QGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 243

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 117/253 (46%), Gaps = 19/253 (7%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+   + +K ++    +   + G H +  A  + +  I  +L  +          N
Sbjct: 8   NTKIKQWAKYKEK-KYRDADQKFLIEGEHLLQEA--HTAGLIECILVEQG--------KN 56

Query: 87  LPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +P+  +PV  V  + + K+   ++V     +               S  +++LD V DP 
Sbjct: 57  IPYEQYPVYYVTREILKKLT--DSVSGSWVMAVCHFPE---QQALTSDKIIILDGVQDPG 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+A++FS   I+ +K      +  + +S  GAL H+  IR + L  A++++   
Sbjct: 112 NLGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGALFHLNIIR-TELLTAIEELKEK 170

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G++  G S     PL Q     + ALI+G EGKG+R +         ++ M    ++LNV
Sbjct: 171 GYKIYGTSLHEAIPLSQVHPKKRHALIMGNEGKGVREEILCQTDQNVYIEMD-TFESLNV 229

Query: 266 SNAAAVALYITQN 278
           + AAA+ +Y  +N
Sbjct: 230 AVAAAICMYTFKN 242


>gi|307710737|ref|ZP_07647165.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
 gi|307617343|gb|EFN96515.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
          Length = 246

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 110/275 (40%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A+ P       V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---ASFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+S+    L++        +  +        +E+   +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMSSQA-LLKETKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMVESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|255283672|ref|ZP_05348227.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255265737|gb|EET58942.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 277

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 8/257 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +RH  +           V  AL+     +  LL  K+             
Sbjct: 18  YARLTEGQLLNRHEPEKGLFIAESPKVVERALDAGCIPVSLLLERKHIEGEARDVLARCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + K+ G       L     P L    +    ++ + VL++V +P N+GA
Sbjct: 78  DVPVYTADFDVLTKLTGFALTRGVLCAMRRPPLPSVREVCSGARRIAVLENVMNPTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHS 204
           I RSA A   D ++ T   S        + + G +  IP+  ++     +    ++ + S
Sbjct: 138 IFRSAAALGMDAVLLTPDCSNPLYRRSIRVSMGTVFQIPWTWLTAKETQHFPSYVRFLKS 197

Query: 205 WGFQTIGLSS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             F T  ++  DS  P+  +      K+A+ILG+EG GL   T         + M   + 
Sbjct: 198 LCFGTAAMALTDSSIPVSDQRLAGEEKLAVILGSEGDGLSAATLADCDYTVRIPMAHGVD 257

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ A+AVA +    
Sbjct: 258 SLNVAAASAVAFWELCR 274


>gi|269114836|ref|YP_003302599.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322461|emb|CAX37196.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 230

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 12/233 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            ++G ++V  A+      I ++   K  +       N      V  +   ++DK+  +  
Sbjct: 4   IVFGKNSVLEAIEY-EFPIEEIYLQKGLVN------NNLKFKKVVYLDRNSLDKLT-ENG 55

Query: 110 VHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            HQG A +        L ++    S  +++LDH+ DP N GAI+RSA  F    II  K 
Sbjct: 56  NHQGYAAKLKDFQYHDLGSIFKDGSDKVLILDHIQDPQNFGAIIRSANVFGFKHIIIPKD 115

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN 226
            +   +  + K++SG  +++  I++++L DA++++ + GF     + +   K L     N
Sbjct: 116 RACDVTPSVLKTSSGGFKNVKVIKVNSLFDAIEELKNKGFWIYASALNQQAKKLNDAKFN 175

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYITQN 278
           +KIA+I+G EG G+     + +  + ++      +++LNVS A  + LY   N
Sbjct: 176 EKIAIIVGNEGSGVSKTLLKHSDEIIYIEQDKESVQSLNVSVATGILLYTVFN 228


>gi|171780263|ref|ZP_02921167.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281611|gb|EDT47046.1| hypothetical protein STRINF_02051 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 218

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 102/226 (45%), Gaps = 12/226 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            + G H    A      +   +   +    R++  ++      V  V P+ + ++     
Sbjct: 1   MIEGWHLFEEA-QKADAEFLNIFVLEEFSDRVEGLSH------VTYVTPEVLKELTDS-K 52

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
             QG+  E      P  D    +   +VL+ V DP N+G ++R+A A   DG++ +++ +
Sbjct: 53  TPQGIIAEVVMPSLPLADL--KADRYLVLEDVQDPGNVGTMIRTADAAGLDGVLISEKTA 110

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
              +    +S  G+  H+P    +N+ +A QK+ S G   +  + S      +      +
Sbjct: 111 DIYNQKTLRSMQGSHFHLPV-WCTNVYEACQKLQSLGVPLVATTLSKDSVDYKTVEHKGE 169

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            AL++G EG G+  +  + A  +AH+ MPG  ++LNV+ A  + L+
Sbjct: 170 FALVMGNEGNGISEQMTKQADILAHIIMPGQAESLNVAVATGIVLF 215


>gi|269795465|ref|YP_003314920.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269097650|gb|ACZ22086.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score =  207 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 11/258 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     +S+H  +         + +  AL    R     +A K   +  D     P
Sbjct: 16  DYTNLTDIVLRSKHEPEKGLFIAESSNVIRRALAAGLRPRSFFMAEKWVESMADVVEQWP 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVN 142
              PV    P+ ++ I G       LA    P+     + +        ++ + + + V 
Sbjct: 76  -DVPVFVGEPKLLEDITGFHLHRGALAAMHRPVEPSVAELLAGARGGEGARRVAIFEDVV 134

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GA  RSA A   D ++ T R S        + + G +  +P+ RI      + ++
Sbjct: 135 DHTNLGAAFRSAAALGVDAVLVTPRCSDPLYRRSVRVSMGTVFQVPWTRIP-WPSGIGEL 193

Query: 203 HSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            + GF    L+ SD    L++  E KN+K A I G EG GL  +T E   S+  + M G 
Sbjct: 194 QAAGFTVAALALSDDSVTLDEFVEQKNEKTAFIFGTEGHGLAQETLEAVDSVVKIPMAGG 253

Query: 260 IKALNVSNAAAVALYITQ 277
           + +LNV+ +AAV  Y T+
Sbjct: 254 VDSLNVAASAAVVFYATR 271


>gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12]
 gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
 gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12]
 gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
          Length = 254

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 113/282 (40%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  + E   L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKEEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+                    V  + +D +    A  QG+    A 
Sbjct: 42  -ASSDAEIKELFVTQRGRKEWGDWLAANKEISTFLVSDEVMDAVSDLPA-PQGILAVMAL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TAEGAPDFSGG---WLLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +LT+ +  M   GF   G    +    L++  K+D  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-KDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +         ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQEILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|289642391|ref|ZP_06474538.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
           Datisca glomerata]
 gi|289507823|gb|EFD28775.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
           Datisca glomerata]
          Length = 409

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 11/235 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLP--HPFPVKTV 96
           SR         + G + V  AL       +  + A      RLD    L       V  V
Sbjct: 150 SRADRGEPEELVVGRNAVVEALRAGVPASVLYVAAGTEYDERLDEARRLAPRAGVAVADV 209

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAI 150
               +D++ G  A HQGLAL   P      D +          LL+ LD V DP N+GA+
Sbjct: 210 ARGDLDRLCGS-APHQGLALSVPPFRYAHPDDLLARAQEAPPGLLVALDGVTDPRNLGAV 268

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA AF   G++  +R +   +A   K+++GA   +P  R +NL  AL      G   +
Sbjct: 269 VRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLVRALTGWAQAGLFVV 328

Query: 211 GLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           GL++D +  L++ E+ +D + L++G+EG+GL     E       + M G +++LN
Sbjct: 329 GLAADGEVSLDELEMASDPLVLVVGSEGRGLSRLVGERCDLTVRIPMAGDVESLN 383


>gi|71083818|ref|YP_266538.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91763146|ref|ZP_01265110.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|71062931|gb|AAZ21934.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717559|gb|EAS84210.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 247

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 7/234 (2%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           +  + G H V  AL NP RK+ ++  T+ +     R +   N+     V     + +DK 
Sbjct: 5   SFLIVGQHAVIEALRNPKRKVLKVFLTEESKKNIHRKNPKKNVLEDVKVYFKSKKELDKY 64

Query: 105 VGKEA-VHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             K+  +H G   E   +  P L      +N    + +D V DP NIG+++RSA +F  D
Sbjct: 65  TSKDQIMHGGYIAEVEHIDQPDLKEFIKGKNELTFVCIDEVTDPRNIGSLIRSASSFHID 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  +R  PS+S ++ K+ASG +EHI    +SN+   L+ +    F   G  +  +K  
Sbjct: 125 GLIVKERQFPSDSKLMYKAASGCMEHINIFEVSNINSTLKNLREKNFWVYGFDARGEKDF 184

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     K  L+ G+EG G+R  T +       + +   +++LN+SN+AA+  +
Sbjct: 185 TEIKWEGKNVLLFGSEGFGMREHTGKYTDFFVKIDINKDVESLNISNSAAIVFH 238


>gi|262341137|ref|YP_003283992.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272474|gb|ACY40382.1| tRNA/rRNA methyltransferase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 253

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 15/244 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALA-----RLDWDANLPHPFPVKTVPPQTIDK 103
             +YG+  +  A+ +  + I +L   +         +     +     P++TVP Q   +
Sbjct: 5   EIVYGIRPLIEAIRS-KKTISKLFFQRGFRKISNAYKELISLSKKENIPIQTVPKQKFYQ 63

Query: 104 IVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG+    +P+       L P       + LL++LD + D  N G+I+R++  
Sbjct: 64  L--KNKNHQGVFAILSPIETYQIKDLLPVFYEKGKNPLLVILDRITDVRNFGSIIRTSAC 121

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II  K+Y+    +   K++SGAL  +P  +  N+ + ++ + + G + +  +  S
Sbjct: 122 VGADAIIIPKKYTAMIGSDSIKTSSGALFKVPICQEKNIKNTIEFLMNSGLKIVSATEKS 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    +   ALILG E KG+ PK  E +   A +     I +LNVS A  V LY  
Sbjct: 182 NIYWYNIDFSGPTALILGNEEKGISPKYLEISCEKAKIPAIKGISSLNVSVACGVILYEV 241

Query: 277 QNHF 280
               
Sbjct: 242 FRQR 245


>gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
 gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
          Length = 264

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 102/261 (39%), Gaps = 8/261 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K++ S  Q+ ++ ++     + G+ ++     + +  I  ++  ++     + 
Sbjct: 6   SKDNKTIKRIVSLGQR-KNRNKHGEYIVEGIRSIRDI--SSNGVIKTIVIRESKFKDNNI 62

Query: 84  DANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           +A L        P         DKI       QG+    A              + + LD
Sbjct: 63  EALLALDSMQSIPTYIAQDPIFDKI-DNTVNGQGIIAIVAKPNHSIESISIEDGVYITLD 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G I+R+AVA    GI   K      +    +S   AL  IP      L+   
Sbjct: 122 GVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPVYEDVTLSMLN 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +      T   + +  KP      + +  LILG EG G+ P+          + M G 
Sbjct: 182 DLIAESNMSTYVTALEESKPYNMVTYDKRCMLILGNEGNGVTPEVMNLCKHRIMIPMYGD 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
           I++LNVS AAA+ +Y  Q   
Sbjct: 242 IESLNVSVAAALCMYKAQEQL 262


>gi|223933718|ref|ZP_03625692.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|330833335|ref|YP_004402160.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
 gi|223897599|gb|EEF63986.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|329307558|gb|AEB81974.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
          Length = 246

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 118/275 (42%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M++I  K +  +  +K     K R +                     +  + G H +  A
Sbjct: 1   MDIIRSKTNNLVKQVKKLQQKKYRTS---------------------SYLIEGWHLLEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +  I  +   +    ++   AN      V  V P+ +  +       QG+  + A 
Sbjct: 40  MEAGAN-IEHIFVVEEYFEKVAGLAN------VTVVSPEIMQDLADS-KTPQGVVAQLA- 90

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L S  L    + +  +VL+ V DP N+G ++R+A A   DG+  + + +   +  + +S 
Sbjct: 91  LPSQLLPETLDGKF-LVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+  ++  L  + S   + +  +  S+    +EI      AL++G EG+G
Sbjct: 150 QGSHFHLPVYRMP-ISSILTALKSNQIKILATTLSSQSVDYKEITPHSSFALLMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + A  + H+ MPG  ++LNV+ AA + L+
Sbjct: 209 ISDLVADEADQLVHITMPGQAESLNVAIAAGILLF 243


>gi|163786199|ref|ZP_02180647.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159878059|gb|EDP72115.1| tRNA/rRNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 244

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 109/241 (45%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+ +    I ++   K     L  +              VP + ++++   
Sbjct: 7   IFGIRAIIEAIKSGK-TIDKVFMQKGLRGELFQELEHLLRSESINSSYVPVEKLNRLT-- 63

Query: 108 EAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              HQG   + +P+    +D +         + L ++LD ++D  N GAI+R+A     +
Sbjct: 64  RGNHQGAVAQISPIAFHNIDDLVMQVIESGKTPLFLLLDQLSDVRNFGAIVRTAECTGVN 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+     +    K+++GA+  IP  ++ ++ DA+  M S G + I  +  +   +
Sbjct: 124 GIIIQKKGGAPINGDTIKTSAGAIFKIPVCKVDHIKDAVFHMQSSGIKVIAATEKANDFV 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +  A+I+G+EG+G+ P   +   + A L + G I++LNVS A    LY      
Sbjct: 184 YDVSFKEPCAIIMGSEGRGINPSVLKVVDAKAKLPILGEIESLNVSVACGAFLYEAVRQR 243

Query: 281 A 281
           +
Sbjct: 244 S 244


>gi|306830168|ref|ZP_07463352.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
 gi|304427694|gb|EFM30790.1| SpoU rRNA methylase [Streptococcus mitis ATCC 6249]
          Length = 246

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 110/275 (40%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +    R I ++ A ++   +L   A  P       V    +  +   +   QG+      
Sbjct: 40  VQAGVR-IEKIFALESYRDQL---AAFPQTV---WVSEDILQDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDFSQGK--FLFLEDVQDPGNVGTMIRTADATGFTGVIVSDKSADIHSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  R+ +L   +++        +  + S   K   +    +  AL++G EG+G
Sbjct: 150 QGSHFHLPIYRM-SLATFIEEAKKSNLPILATTLSKESKDYRELSPLENFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|312880239|ref|ZP_07740039.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
           DSM 12260]
 gi|310783530|gb|EFQ23928.1| RNA methyltransferase, TrmH family, group 3 [Aminomonas paucivorans
           DSM 12260]
          Length = 261

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 11/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQT 100
            + +   LYG + V A L +  R+  ++     T++       D       P++ +  + 
Sbjct: 6   QKEQEDLLYGRNAVWALLESQPRRCLKVWLAKGTRDPFRSRILDRCREAGIPLQELDGKG 65

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRS 153
           +++++    VHQG+A  TA +    L  V           L++VLDH+ DPHN GAI+RS
Sbjct: 66  LERML-PGKVHQGVAARTAGVELLELREVLARIPPAPEPVLVVVLDHLEDPHNAGAIVRS 124

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A      +   R     +  + K+++GA   +P  RI N+   L+ +   G   +GL 
Sbjct: 125 AEAVGALAALLPLRRGALPTGAMVKASTGAALRLPLGRIGNVGQDLRLLQEAGLWVVGLE 184

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  ++ L +   + ++AL++G+EGKGL   T +    + H+ M G   +LN S AAA+ L
Sbjct: 185 AQGERSLFETPLSPRMALVVGSEGKGLGRTTLQGCDEVLHIPMRGESGSLNGSVAAALGL 244

Query: 274 YITQN 278
           Y    
Sbjct: 245 YEWFR 249


>gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
 gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
          Length = 360

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/303 (24%), Positives = 134/303 (44%), Gaps = 29/303 (9%)

Query: 2   NLISKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
              + K  ++++     +  A ++R   D  ++ +  +  +  +  + L + G +    A
Sbjct: 51  KGPTPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGTDSDELVI-GRNAALEA 108

Query: 61  LNN--PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L    PS +++       +   R            +       +D+I      HQG+ L+
Sbjct: 109 LRVGVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILK 167

Query: 118 TAPLLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVA 156
             P    +L  + +                       L + LD V DP N+GA++RSA A
Sbjct: 168 VQPYQYYSLQELVDRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAA 227

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL    
Sbjct: 228 FGANGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGG 287

Query: 217 KKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            K + E   + D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY 
Sbjct: 288 DKLVGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYA 347

Query: 276 TQN 278
             N
Sbjct: 348 VAN 350


>gi|28378262|ref|NP_785154.1| rRNA methylase [Lactobacillus plantarum WCFS1]
 gi|254556469|ref|YP_003062886.1| rRNA methylase [Lactobacillus plantarum JDM1]
 gi|308180411|ref|YP_003924539.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|28271097|emb|CAD64002.1| rRNA methylase [Lactobacillus plantarum WCFS1]
 gi|254045396|gb|ACT62189.1| rRNA methylase [Lactobacillus plantarum JDM1]
 gi|308045902|gb|ADN98445.1| rRNA methylase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 257

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 19/271 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL+++H        + +KK+Q+     +   Q     L G H V+ A+      I 
Sbjct: 4   EKINSLQNAHV-------KAWKKLQT----KKGRKQQGQYLLDGWHLVNEAVKAHV-AIQ 51

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDA 128
            LL T   LA      + P    +       + K +      QG+ AL T P     L  
Sbjct: 52  TLLITAKQLATEPDLTHFPAVIEI----SDEVAKHISATVTPQGVFALATLPAAIEDLSQ 107

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  ++  ++LD+V DP NIG ++R+A A    G+             + ++  G+  H+ 
Sbjct: 108 LDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQ 167

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQET 247
            I  ++L   + ++ + G    G   + +              LI+G EG G+  +    
Sbjct: 168 LIS-TDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLAR 226

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                ++ + G  ++LNV+ AA V ++    
Sbjct: 227 TDQNLYIPIKGQAESLNVAVAAGVLMFGLYR 257


>gi|71902954|ref|YP_279757.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|71802049|gb|AAX71402.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
          Length = 245

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A     +    +   +  + RL  +  L        V PQ + ++
Sbjct: 23  RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMVERLAGEQELV------IVSPQVLKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               +  QG+  E            +     +VL+ V DP N+G I+R+A A   DG+  
Sbjct: 76  TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R +++    +++  +    +  +   K    + +
Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191

Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|125718589|ref|YP_001035722.1| SpoU rRNA methylase family protein [Streptococcus sanguinis SK36]
 gi|125498506|gb|ABN45172.1| SpoU rRNA Methylase family protein, putative [Streptococcus
           sanguinis SK36]
 gi|324995033|gb|EGC26946.1| SpoU rRNA methylase [Streptococcus sanguinis SK678]
          Length = 246

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+ +   ++ ++ A      RL   +       V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAV-SSGEELIRIFALAEYAERLGDFSQ------VIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFEREAIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           +   +   +    +S  G+  H+P  R+ +  D ++   S     +  +  S      + 
Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSSLPILASTLSSTSIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              D  AL++G EG+G+ P+  E A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 DSKDSFALVMGNEGQGISPEMTEAADVLVHISMKGQAESLNVAVAAGILIF 243


>gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 332

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 133/300 (44%), Gaps = 29/300 (9%)

Query: 5   SKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           + K  ++++     +  A ++R   D  ++ +  +  +  S  + L + G +    AL  
Sbjct: 25  TPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGSDSDELVI-GRNAALEALRV 82

Query: 64  --PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             PS +++       +   R            +       +D+I      HQG+ L+  P
Sbjct: 83  GVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQP 141

Query: 121 LLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L  +                         L + LD V DP N+GA++RSA AF  
Sbjct: 142 YQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFGA 201

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL     K 
Sbjct: 202 NGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQSLRERGWYAIGLDGGGDKL 261

Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + E   + D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY   N
Sbjct: 262 VGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVAN 321


>gi|306832022|ref|ZP_07465177.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304425948|gb|EFM29065.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 246

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 12/233 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A      +   +   +      D+   + H   V  V P+ + ++
Sbjct: 24  RDHSYLIEGWHLFEEA-EKAGAEFLNIFVLE------DYADRVSHFSMVTYVTPEVLKEL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A    P  D    +   +VL+ V DP N+G ++R+A A   DG++ 
Sbjct: 77  TDS-KTPQGIIAEVAMPSLPLADL--KAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  H+P  R +++ +A QK+ +     I  + S      +  
Sbjct: 134 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYEACQKLQNLDVPLIATTLSKESVDYKTV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             N   AL++G EG G+     + A  +AH+ MPG  ++LNV+ A  + L+  
Sbjct: 193 EHNGDFALVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245


>gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 244

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 112/253 (44%), Gaps = 16/253 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+   + +K +H  + +   + G H +  A    +  +  +L              
Sbjct: 8   NAKVKQWAKYKEK-KHREKDQKFLVEGEHLIEEA--ARAGLVEAILVEAGRGHDFL---- 60

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               +PV  V P+ + K+    +    +A+   P      +     + ++VLD V DP N
Sbjct: 61  ---QYPVYEVTPEILKKLQSSISGTWIMAVCRMPQY----NTADYGERVIVLDDVQDPGN 113

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+RSA++F  D ++ +       +  + +S  GAL H+P IR   + D LQ++   G
Sbjct: 114 VGTIIRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGALFHVPVIR-GEVVDMLQELKRKG 172

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            + +  S  +  PL +   +++ AL+ G EG G+       A +  ++ M    ++LNV+
Sbjct: 173 IRILATSLRNATPLHEIAASERFALVFGNEGSGVSEDVLYLADTHVYIEMD-TFESLNVA 231

Query: 267 NAAAVALYITQNH 279
            AA + +Y  +  
Sbjct: 232 VAAGICMYTLKRR 244


>gi|269217458|ref|ZP_06161312.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269213079|gb|EEZ79419.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 326

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 136/297 (45%), Gaps = 18/297 (6%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAA 60
              + K  ++++              R+  +++  N+ +   +  P +  + G + V  A
Sbjct: 30  KGPTPKAEDRVYHPAHKRKLAAEAARREQARLEKANRLRPELSLAPGHELIAGRNAVLEA 89

Query: 61  LNNPSRKIFQLLATKNA--LARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           + +    + ++  +       RL            P+       +D++    AVHQG+A+
Sbjct: 90  VRSGI-PLSRVFVSGGVASDERLGEVVRTATALGAPLFEASRTELDRMTD-GAVHQGVAI 147

Query: 117 ETAPLLSPTLDAV----------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           E  P     ++ +              L++ LD V DPHN+GA++RSA AF  DG++  +
Sbjct: 148 EVPPYEYADVEDLVERAGKGARAGRPGLVVALDSVTDPHNLGAVMRSASAFGADGVVVPE 207

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   +A + K ++GA   +P  R+ NL  AL K+ + G+  +GL       +E     
Sbjct: 208 RRSAGVNATVWKVSAGAAARVPAARVPNLVAALGKLKTRGYFAVGLDGRGDTAIEDISFA 267

Query: 227 D-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           D  I L+ G+EGKGL   T+ET  ++A + +   +++LNV+ A  +ALY      A+
Sbjct: 268 DAPIVLVTGSEGKGLARLTRETCDAIASVPIAAELESLNVAVATGIALYQIDRLRAR 324


>gi|229543606|ref|ZP_04432666.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
 gi|229328026|gb|EEN93701.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
          Length = 251

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 108/263 (41%), Gaps = 21/263 (7%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I SL++            +KK+ +  ++ +  +      L G H V  AL      + ++
Sbjct: 4   IQSLQNPQVKH-------WKKLTAKKEREKTFT----YLLEGFHLVEEALK--EEVVTEI 50

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           +  +       W+       PV TV    I K +      QG+         P+    R 
Sbjct: 51  IVEEGVDLPNRWNT---EGVPVTTVT-HEISKTLADTETTQGIFAVCRMKKQPSKIIGR- 105

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +++D V DP N G ++R+A A   D +I  K  +   S  + ++A G+  H+  ++
Sbjct: 106 --RYLLIDAVQDPGNTGTMIRTADAAGFDAVIFGKGTADPYSPKVLRAAQGSHLHVGLLK 163

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +L   ++K++       G + ++     +    D  A+++G EG G+ P         
Sbjct: 164 -GDLNMWIEKLNEAAVPVYGTALENGVTFREVNPGDAFAILVGNEGSGVHPDLLAQTEQN 222

Query: 252 AHLHMPGIIKALNVSNAAAVALY 274
             + + G  ++LNV+ AA + +Y
Sbjct: 223 LSIPIFGKSESLNVAVAAGILMY 245


>gi|301320680|gb|ADK69323.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 244

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 102/240 (42%), Gaps = 9/240 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H V   L      + ++      L  L+          V  V    +D+++  + 
Sbjct: 5   LIYGKHVVFELLKKHQNMVKEIWVKD--LKILNEFDLKKTKIKVNVVSENKLDQLLETQT 62

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+  +         + +      +   L+++LD ++  +N GAI+RS    + DGII
Sbjct: 63  QHQGIIAQIKDFNYTPFNELISDLNKKEKSLVLILDQIHYSYNFGAIIRSCSLLNVDGII 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQ 222
              +     ++ + K++SG+   I   + +NL +A++ + +  F     + + +   + +
Sbjct: 123 ILDKKQVQVNSTVLKTSSGSAFDIKICKTNNLNNAIKILKNNNFWIYATNLNQNSTDMTK 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               +K A+I+G E KG+     + +    ++     I + N S A ++  +   N+  K
Sbjct: 183 IDFANKTAVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDSFNASVACSIICFWIANYLNK 242


>gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
           15176]
 gi|282569778|gb|EFB75313.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
           15176]
          Length = 257

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 111/257 (43%), Gaps = 12/257 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
            R +   K   S     +  +     F  G         +   R      AT+ ALA+  
Sbjct: 8   SRENPKIKYACSVRDSEKQRAADGLFFAEGPKLCLELAKSCTPRT---AYATEAALAKTP 64

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             A+L +P P   V P   +K+ G ++      L   P   P L  + +++ ++ L+ V 
Sbjct: 65  ALASL-NPMP---VAPHVAEKLAGTKSSQGVFVLFETPQTDPAL--LDSARRILALEGVQ 118

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA AF  D ++     +   S    +S+ GA   +P +   NL   L ++
Sbjct: 119 DPGNVGTLLRSAAAFGFDAVVLGPGCAAPFSPKTLRSSMGAAGRLPVVHTENLPGTLHRL 178

Query: 203 HSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              G   +  +    +PL++E       + +++G+EG+GL  +T +   +   + M   +
Sbjct: 179 RERGVTCLAAALYHSRPLDEEGRDFPAGVCVVIGSEGQGLTDETVQACDAAVRIPMTDRV 238

Query: 261 KALNVSNAAAVALYITQ 277
           ++LN   A +V L+  +
Sbjct: 239 ESLNAGVAGSVLLWHFR 255


>gi|83720773|ref|YP_442566.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83654598|gb|ABC38661.1| RNA methyltransferase, TrmH family [Burkholderia thailandensis
           E264]
          Length = 281

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 109/264 (41%), Gaps = 7/264 (2%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DS  A   R++  YK++++    +    +     L G+H  SA L+   +    +  T  
Sbjct: 18  DSMKAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDG 76

Query: 77  ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           AL+  +    +    P + V  P  +   +       GL L  A       + V N+   
Sbjct: 77  ALSHAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTS-- 134

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      + 
Sbjct: 135 VVLDGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDA 194

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++++           S   + +        +A + G EG G+  + ++ AT    + 
Sbjct: 195 GTLIERLA---IPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIP 251

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
            PG +++LNV+ AAAV L+     
Sbjct: 252 QPGGMESLNVAAAAAVCLFEQCRQ 275


>gi|300741487|ref|ZP_07071508.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300380672|gb|EFJ77234.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 273

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 4/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R Y  +     +S                V  AL+   R +  L++ K A    D     
Sbjct: 19  RYYTHLTDVRLRSALEPDWGIYIAESSKVVRRALHAGHRPLSFLMSEKWADDLSDVLTKY 78

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            +  P      + +++I G       LA    P      D +  +  + +L+ + D  N+
Sbjct: 79  -NNIPAFVGSEEELERITGFHLHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNV 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ T R +        + + G +  +P+ RI+     L+ +H  GF
Sbjct: 138 GAIFRSAAALGVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGF 197

Query: 208 QTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++  L+ D       ++    + K+ALILG EG GL P T         + M   + +LN
Sbjct: 198 ESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLN 257

Query: 265 VSNAAAVALYITQ 277
           V+ A+AVA + T+
Sbjct: 258 VAAASAVAFWETR 270


>gi|300767192|ref|ZP_07077104.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495011|gb|EFK30167.1| TrmH family RNA methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 255

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 19/271 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL+++H        + +KK+Q+     +   Q     L G H V+ A+      I 
Sbjct: 2   EKINSLQNAHV-------KAWKKLQT----KKGRKQQGQYLLDGWHLVNEAVKAHV-AIQ 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDA 128
            LL T   LA      + P    +       + K +      QG+ AL T P     L  
Sbjct: 50  TLLITAKQLATEPDLTHFPAVIEI----SDEVAKHISATVTPQGVFALATLPAAIEDLSQ 105

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  ++  ++LD+V DP NIG ++R+A A    G+             + ++  G+  H+ 
Sbjct: 106 LDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQ 165

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQET 247
            I  ++L   + ++ + G    G   + +              LI+G EG G+  +    
Sbjct: 166 LIS-TDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLAR 224

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                ++ + G  ++LNV+ AA V ++    
Sbjct: 225 TDQNLYIPIKGQAESLNVAVAAGVLMFGLYR 255


>gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 263

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 94/254 (37%), Gaps = 5/254 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   KK  S  QK ++  +     + GV  V     + S  +     T   L       
Sbjct: 9   QNETVKKAASLQQK-KYRLREGLFLVEGVRAVREV-RSSSWTVTAYFFTD--LPEDFQKE 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 P   V    + K+   E   Q LA                  L++VLD ++DP 
Sbjct: 65  AQGSDIPYYEVTGDIMKKLTATEE-PQSLAALVRLKERSLETVHPERGLILVLDEIHDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A A +  G+I     +   +  + ++A G L HIP          +      
Sbjct: 124 NVGTMIRTARAMNAQGVILLSGSADLYNPKVVRAAMGNLFHIPVFTGITEDALMTFAQKA 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+  +  + D    L       K  LI+G+E +G+     E + +   + M G  ++LNV
Sbjct: 184 GWTLVATALDGAADLRDFTYPQKTLLIMGSEAEGVSHSLLEKSAARVKIPMLGEAESLNV 243

Query: 266 SNAAAVALYITQNH 279
             AA + LY     
Sbjct: 244 GVAAGILLYEAMVQ 257


>gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
 gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
          Length = 261

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 109/270 (40%), Gaps = 16/270 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S+++    ++R+ HR           ++   +   L L G H V  A       +  L
Sbjct: 2   ITSIRNPLIKQIRKLHR-----------TKGRREEGLLLLEGTHLVETAYEANC-SLMTL 49

Query: 72  LATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T+    R    W+        ++ V  + +  +        G+   TA     T   +
Sbjct: 50  CYTEQWRTRYPQLWENVSKKVQRLELVSLEVLTAMT-TTINPDGVVA-TALFEPFTEGEI 107

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + +L +V++ + DP N+G I+R+A A   DGI  +      +   + ++++GA   +P 
Sbjct: 108 TDFRLGLVIERLQDPGNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWFQVPI 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S+L   ++K  + GF  +    ++ +            ++LG EG GL       A 
Sbjct: 168 FISSDLKRIVEKYKNNGFNIVATLPNTTQTYWHLQLTKPTLILLGNEGSGLSDSLVSLAN 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  + +   I++LNV+ A A+ LY     
Sbjct: 228 EIVSIPLSEGIESLNVAIATALILYEAXRQ 257


>gi|118586223|ref|ZP_01543687.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
 gi|118433339|gb|EAV40041.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
          Length = 255

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 123/277 (44%), Gaps = 24/277 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+  ++ ++               + +  +Q+   + +         L G H V  A
Sbjct: 1   MEIITSNQNSRV---------------KIWTSLQTLKGREK----SGTYMLDGWHLVQDA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           LN  +  I  ++AT+  + +   D  +P   P   V  + + + + K    QG+  +T+ 
Sbjct: 42  LNQAA-PIQAVIATEEQMDQHLID--VPQGVPAFQVS-EEVARHIAKTNTPQGIFAQTSL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +       ++   ++LD + DP N+G ++R+A A    G+  +K  +   +  + ++ 
Sbjct: 98  PNNSFDPKYVHNGSWLLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+  ++  +L D + K+ +  +   G   S++    +  +     ALILG EG+G
Sbjct: 158 QGSQFHLKLVKEVDLNDWVDKLEANDYNVYGSTLSENSVDYKTVVPEKNFALILGNEGQG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + P+ Q   +   H++  G  ++LNV+ A  + ++  
Sbjct: 218 IDPEIQAKTSENLHINFLGKAESLNVAVAGGILMFAL 254


>gi|256421956|ref|YP_003122609.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
           DSM 2588]
 gi|256036864|gb|ACU60408.1| RNA methyltransferase, TrmH family, group 3 [Chitinophaga pinensis
           DSM 2588]
          Length = 263

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 13/265 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDW 83
             R +KK   F Q +       +  + G   +  A+       +IF L      +     
Sbjct: 2   EQRKFKKPGGFRQHA--PRPKASSLVIGRQPIVEAMKAGKAIERIFMLRGATGEIIPQIR 59

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLM 136
                +  P+  VP + ++ +    A HQG    T  +    L  V         + L +
Sbjct: 60  QLAEQYNIPINLVPVEKLNGLTS--ANHQGCVAITGNINYLDLQDVISHVTEQGQTPLFL 117

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD + D  NIGAI RSAV      II   R   + +    KS++GALE I   R+++L 
Sbjct: 118 ILDGITDVRNIGAIARSAVCCGAQAIIIPDRGIAALNEEAIKSSAGALETISVCRVNSLL 177

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            A+  +H  G + I    +++  L      + +A+I+G+E KG+ P   + + ++ H+ M
Sbjct: 178 KAIDTLHLNGIKVIASEMEAETKLYDCQLQEPVAVIMGSEDKGVFPALIKASDTLFHIPM 237

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
            G  ++ NVS AA + LY       
Sbjct: 238 AGNFESFNVSVAAGIILYEAMKQRG 262


>gi|154687000|ref|YP_001422161.1| YsgA [Bacillus amyloliquefaciens FZB42]
 gi|154352851|gb|ABS74930.1| YsgA [Bacillus amyloliquefaciens FZB42]
          Length = 248

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 110/268 (41%), Gaps = 22/268 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S K+          +D+KK+ +  ++ +         + G H    AL +    + 
Sbjct: 2   KRIDSAKNQKV-------KDWKKLHTKKERLK----TNTFLIEGEHLAEEALKSKG-TVK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           ++L    +    D D       P   +       +   E   +        +     D +
Sbjct: 50  EILVNDESAIPADLDM----SIPCYVLSEDAFSAVTETETPQR--IAAVCHMPDKRPDQL 103

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +    L+++D V DP N+G ++R+A A   D ++  +  +   +    +SA G+  HIP 
Sbjct: 104 K---RLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPI 160

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           ++   L +   ++ S G    G + ++    +     +  ALI+G EG G+     +   
Sbjct: 161 LKRP-LDEFTAELKSQGVAIYGTALENGAAYQSVKPEESFALIVGNEGAGVDAGLLQKTD 219

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
              ++ + G  ++LNV+ AAA+ +Y  +
Sbjct: 220 LNLYVPLYGQAESLNVAVAAAILVYHLR 247


>gi|257439912|ref|ZP_05615667.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
 gi|257197640|gb|EEU95924.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
          Length = 275

 Score =  206 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 8/258 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     +SR   +           +S AL+     +  L+  +              
Sbjct: 18  YARLTQNQLRSRLEPEKGIFIAESPKVISRALDAGFVPVSLLMERRQITGPAAEILTRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P+ T   + +  + G E     L     P      +  RN++ + VL+ + D  N+GA
Sbjct: 78  DAPIYTADRELLAALTGYELTRGVLCAFQRPKPRTVEELCRNARRVAVLEGIVDSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204
           I RSA A + D ++              + + G +  +P+ +I           L ++++
Sbjct: 138 IFRSAAALNMDAVLVNPSCCDPLCRRAVRVSMGTVFQVPWAQIGETPADWPEKGLAQLNA 197

Query: 205 WGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF+T  ++ SD    ++ E      K+A++LG EG GL   T  +      + M   + 
Sbjct: 198 LGFKTAAMALSDRSVSIDDEALAREPKLAIVLGTEGDGLSHTTIASCDYTVKIPMSHGVD 257

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A+AVA +     
Sbjct: 258 SLNVAAASAVAFWQLGKQ 275


>gi|197301328|ref|ZP_03166413.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
           29176]
 gi|197299646|gb|EDY34161.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
           29176]
          Length = 279

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 27/261 (10%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K++    +KSR   +     + G   V      P  +I +L  +++   R +   
Sbjct: 6   SNAQIKELAKLQKKSRLRDERRIFLVEGPRMVEEI---PKERIERLYISES-FERKNPAY 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----------- 134
                 P + +        V      QG+      L     D +  S L           
Sbjct: 62  IRELGMPAEVLSDPVFS-YVSDTKNPQGILAVVKRLEYTMEDVLGKSALKCEEKSGEKEK 120

Query: 135 -----------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                      ++VLD++ DP N+G I R+A A    GI+ +       +  + +S  GA
Sbjct: 121 NPENHQIRVPHVIVLDNLQDPGNLGTIFRTAEAAGATGILLSSDSVDVYNPKVIRSTMGA 180

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +P+  + +L  A++ + S G +T     + K   ++E   +  A ++G EG GLR +
Sbjct: 181 VFRMPFFYVKDLPAAVKSLSSQGIRTYAAHLNGKNVYDEEDYTEGCAFLIGNEGNGLRDE 240

Query: 244 TQETATSMAHLHMPGIIKALN 264
             E A  +  + M G  ++LN
Sbjct: 241 VSECADCLIRIPMCGKAESLN 261


>gi|56808573|ref|ZP_00366304.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
          Length = 245

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A     +    +   +    RL  +  L        V PQ + ++
Sbjct: 23  RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMAERLAGEQELV------IVSPQVLKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               +  QG+  E            +     +VL+ V DP N+G I+R+A A   DG+  
Sbjct: 76  TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R +N+    +++       +  +   K    + +
Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TNVYQLCRELQEHKTPILATTLSKKSVDYKSL 191

Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|332521645|ref|ZP_08398098.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
           5H-3-7-4]
 gi|332042734|gb|EGI78934.1| RNA methyltransferase, TrmH family, group 3 [Lacinutrix algicola
           5H-3-7-4]
          Length = 244

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 110/240 (45%), Gaps = 13/240 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++G+  +  A+ + ++ I ++   K     L          +      VP + ++++   
Sbjct: 7   VFGLRAIIEAI-SSNKSIDKVFLQKELKGELFNELVQLIKKNSINSSYVPVEKLNRLT-- 63

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG   + +P+     + + ++        L ++LD ++D  N GAI+R+A      
Sbjct: 64  KGNHQGAVAQISPIAFHDFETLVDNTIASGVTPLFLLLDQLSDVRNFGAIIRTAECTGVH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  K+     +    K+++GA+  +P  ++ ++ DA+  + + G + I  +  +   +
Sbjct: 124 GIVIQKKGGAPVNGDTIKTSAGAVFKVPICKVDHIKDAMFHLQASGVKVIAATEKTNDTV 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    A+++G+EG+G+ P   + A + A L + G I++LNVS A    LY      
Sbjct: 184 FDVSFKQPCAIVMGSEGRGINPSVLKLADARAKLPLLGDIESLNVSVACGAFLYEAIRQR 243


>gi|221632708|ref|YP_002521929.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
           DSM 5159]
 gi|221156305|gb|ACM05432.1| RNA methyltransferase, TrmH family, group 3 [Thermomicrobium roseum
           DSM 5159]
          Length = 261

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 118/249 (47%), Gaps = 10/249 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKT 95
            R      + +LYG + V+ AL    R     +A    T   +  L   A +    PV  
Sbjct: 2   RRLQPGRPSEYLYGRNAVAEALRGRRRHRRLFVASGIETHGRIVALMEAARV-RGIPVIV 60

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILR 152
           +P   +D++VG    HQG+ LET+P        + +     ++++LDH+ DP NI  +LR
Sbjct: 61  IPRSELDRMVGS-VNHQGVVLETSPYPYVDFATLLDPAPESIVLLLDHLQDPQNIATLLR 119

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A    G++  +R +   +  +  +++GA+EH+    ++NL  A+  +   G+  + L
Sbjct: 120 TAEAAGVRGVVLPERRAAGITPAVVNASAGAVEHLQITLVTNLARAVDTLREHGYWIVAL 179

Query: 213 SSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
               + + L +      + L++GAEG GL P   + A     + M G I++LN + A ++
Sbjct: 180 EPGPNAQSLFRAPLPLPLVLLVGAEGHGLSPVLLKRADVQVIIPMLGQIESLNAAVAGSI 239

Query: 272 ALYITQNHF 280
           ALY      
Sbjct: 240 ALYEIVRRL 248


>gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15]
 gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15]
          Length = 254

 Score =  206 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 30/282 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  L                       K ++  + E   L G H +  A
Sbjct: 1   MKEIQSAKNPRIKEL-------------------KKLHKKKYREEKEEYLLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+                    V  + +D +       QG+    A 
Sbjct: 42  -ASSDAEIKELFVTQRGRKEWGDWLAANKGISTFLVSDEVMDAVSDL-PTPQGILAVMAL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TAEGAPDFSGG---WLLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++  +LT+ +  M   GF   G    +    L++  K+D  A+I+G EG+G
Sbjct: 157 QGSNYHLPVLQ-QDLTEVIPLMKDKGFTVYGTELNEEAHALDKVEKSDNFAIIMGNEGQG 215

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +            ++ M G  ++LNV  AA + LY    HF+
Sbjct: 216 VSQGILSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 253


>gi|319946452|ref|ZP_08020689.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
 gi|319747420|gb|EFV99676.1| SpoU rRNA methylase [Streptococcus australis ATCC 700641]
          Length = 254

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 106/231 (45%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+N+ +  I  +   ++ + ++  D        V  V P+ + +I
Sbjct: 30  RTDSYLIEGWHLYEEAVNHQA-PIEHVFVLEDFVDKIKVDTK------VTIVTPEVLSEI 82

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              ++  QG+  E    + P           ++L+ V DP N+G ++R+A A   DG++ 
Sbjct: 83  TDSKS-PQGIVAEIK--IQPIQHLQLTQGRYLLLEDVQDPGNVGTMIRTADAAGFDGVLL 139

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           T + +   +    +S  G+  H+P IR+      L  +          + S +    +Q 
Sbjct: 140 TDQSADLYNMKTLRSMQGSHFHLPVIRLPK-EQLLTAIEESQLPIYATTLSQNSVDYKQV 198

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K     L++G EG+G+  K  E+A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 199 EKVPAFVLVMGNEGQGISSKMAESADQLVHITMPGQAESLNVAVAAGILIF 249


>gi|153955807|ref|YP_001396572.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|219856174|ref|YP_002473296.1| hypothetical protein CKR_2831 [Clostridium kluyveri NBRC 12016]
 gi|146348665|gb|EDK35201.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
 gi|219569898|dbj|BAH07882.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 266

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 112/282 (39%), Gaps = 28/282 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M++I  K +  I   K     K R                    + +   + G   V  A
Sbjct: 1   MDIIRSKDNLHIKEAKKLKEKKYR-------------------IRRKEFIIEGFRFVKEA 41

Query: 61  LNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           +N+    I Q+  ++   N   R   + N     P+  V  + +  I   E   QG+   
Sbjct: 42  INS-EFYISQIFLSEYFTNREERFFLERNNKVKCPIYFVTDEILRSISCTE-NPQGIIAV 99

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                +  L+        ++ D + DP N+G I+RSA A    GIITTK      +    
Sbjct: 100 VK---NKELNIKDEQGFYILADRIQDPGNMGTIIRSAHASGALGIITTKGTVDVYNEKTL 156

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++  G++ +IP I+  NL   +  +   GF+ I  S DS           KI + +G EG
Sbjct: 157 RATMGSIFYIPIIQDENLEK-VSTLRQMGFKLISSSLDSDINFYDMDLRGKIIIAIGNEG 215

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            GL    ++ +    ++ MPG  ++LN + AA++ ++     
Sbjct: 216 NGLLQDVKKISDIEVNIPMPGNAESLNAAVAASIMMFEVVRQ 257


>gi|86132534|ref|ZP_01051127.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85816776|gb|EAQ37961.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 244

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 11/239 (4%)

Query: 51  LYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           ++G   +  A+       K+F      N+L          +      VP + ++K+   +
Sbjct: 7   IHGTRAIIEAIEAGKEVDKVFLQKGLHNSLLSELNTLIKKNGIQTSFVPIEKLNKLT--Q 64

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             HQG     +P+     + +         + L ++LD ++D  N GAI+R+A      G
Sbjct: 65  LNHQGAVATISPVKYHDFEELVNRTVESGETPLFILLDQLSDVRNFGAIIRTAECTGAHG 124

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K+     + V  K+++GA   +P  ++ ++ DA+  +   G Q +  +  +   L 
Sbjct: 125 VIIPKKGGAPLNGVAVKTSAGAAFSMPIAKVDHIKDAIYYLQGSGIQVVAATEKTDNTLY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  A+++G E  G+ P   +     A L + G I +LNVS A    LY      
Sbjct: 185 DVDFKEPTAIVMGREDSGVSPGVLKIVDHQAKLPLKGSIASLNVSVACGAFLYEAVRQR 243


>gi|315032894|gb|EFT44826.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0017]
          Length = 258

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 103/239 (43%), Gaps = 5/239 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H V  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLVEEAVKANAEVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +  +    QG+      L +    ++      ++LD++ DP N+G ++R+A A    G
Sbjct: 82  NSL-SELPTSQGILAIVT-LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPL 220
           +I  K  +   +  + +S  G+  H+P ++   LT+ +Q     G    G    ++    
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAY 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 199 YEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|15903830|ref|NP_359380.1| rRNA/tRNA methylase [Streptococcus pneumoniae R6]
 gi|15459472|gb|AAL00591.1| Possible rRNA/tRNA methylase [Streptococcus pneumoniae R6]
          Length = 252

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 46  VQAGV-TIEKIFALENYRDQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 156 QGSHFHLPIYRMTSPA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 215 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 249


>gi|307705545|ref|ZP_07642397.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307620822|gb|EFN99906.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 246

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 110/275 (40%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L   A+ P       V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALESYRDQL---ASFPQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+S+    L++        +  +        +E+   +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMSSQA-LLEEAKEAAIPVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio]
          Length = 387

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/282 (24%), Positives = 119/282 (42%), Gaps = 26/282 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA--- 73
            S   KLR       +  S  + S+     E   ++GV     AL    R    L     
Sbjct: 98  SSELQKLRFEDLSESESSSIRKDSQPNQDKEFEIVFGVAPCLLALTRGRRSASCLFVKSG 157

Query: 74  ---TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLS 123
               ++A+ R+  +A +     +K V  QT++K+     VHQGL L+ +           
Sbjct: 158 EGPERDAILRVCQEA-IRRGVQIKRVNKQTLEKMCD-GKVHQGLCLQASCLGFIKEERPI 215

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            +L+      L +VLD V DP N+GAILRSA     D I+++   S   +  ++K+++G 
Sbjct: 216 TSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAGV 275

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGL-------SSDSKKPLEQEIKNDKIALILGAE 236
           +E +     SNL   ++     G+Q +G        S  +         +    L++G E
Sbjct: 276 MEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLEEGSSQSNVLSCSDFKMSRPTLLLMGGE 335

Query: 237 GKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALY 274
           G GL  + ++    +  +     M   +++LNVS A  + L+
Sbjct: 336 GDGLSSELRQLCDVLITIPPRRHMHPGVESLNVSVATGILLH 377


>gi|19745515|ref|NP_606651.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|94989802|ref|YP_597902.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94993688|ref|YP_601786.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|139474366|ref|YP_001129082.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|19747633|gb|AAL97150.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
 gi|94543310|gb|ABF33358.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94547196|gb|ABF37242.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|134272613|emb|CAM30880.1| SpoU rRNA Methylase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 245

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A     +    +   +  + RL  +  L        V PQ + ++
Sbjct: 23  RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMVERLAGEQELV------IVSPQVLKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               +  QG+  E            +     +VL+ V DP N+G I+R+A A   DG+  
Sbjct: 76  TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R +++    +++  +    +  +   K    + +
Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191

Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|116670673|ref|YP_831606.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116610782|gb|ABK03506.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 269

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 102/264 (38%), Gaps = 6/264 (2%)

Query: 19  HYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           H+ +   + R  DY ++   + +                 +  AL    +        + 
Sbjct: 4   HHLQSADDPRVSDYTRLTDVHLRKLREPAEGMYIAESSRVLRRALAAGHQP-RSFFLAEK 62

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            L  LD         PV       ++ I G       +A    P   P    + N++ + 
Sbjct: 63  WLEDLDDVFEQFPDVPVYIGSAALLEDITGFHLHRGAMAAMQRPSPVPLPGLLANARRVA 122

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A   D ++ + R          + + G +  +P+ R+ +  
Sbjct: 123 VLEDIVDHTNVGAIFRSAAALGVDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWP 182

Query: 197 DALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAH 253
             L  +   GF    +   D    +++      DK+AL+LG EG G+ P+T         
Sbjct: 183 GDLAVLREQGFTVAAMELTDDAVDVDELAARNLDKLALVLGTEGAGMSPETLSAVDLAVR 242

Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277
           + M   + +LNV+ A+AVA +  +
Sbjct: 243 IPMRAGVDSLNVAAASAVAFWELR 266


>gi|167745546|ref|ZP_02417673.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
 gi|167655267|gb|EDR99396.1| hypothetical protein ANACAC_00237 [Anaerostipes caccae DSM 14662]
          Length = 257

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 99/255 (38%), Gaps = 9/255 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  +++    + SR   +       G+         P  +  ++  + + L     + 
Sbjct: 6   QNKQIRQVIKLKKSSRERKRTGLFVAEGLRIFREI---PEEQRAKVFVSSDFLKLHGEEL 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDP 144
                 P + V P+   +I   E   QG+        S   + + R+   +++L+++ DP
Sbjct: 63  ---KGIPFEEVSPKVFREISDTE-TPQGILSLVKMKQSTLSEILKRSGSSILLLENLQDP 118

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+       GII ++      +  + +S  G++  +P+    +L + ++ +  
Sbjct: 119 GNLGTLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMGSIFRVPFTYTEDLAETVEYLRQ 178

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                     +       E  +   A ++G EG GL  +    A     + M G +++LN
Sbjct: 179 QSVHVYAAHLNG-TDYTDESYDKISAFLIGNEGNGLTDRIAALADKRIRIPMEGRVESLN 237

Query: 265 VSNAAAVALYITQNH 279
            + A  + +Y  +  
Sbjct: 238 AAMAGGLLMYEARRQ 252


>gi|148726030|emb|CAN88076.1| novel protein similar to vertebrate mitochondrial rRNA
           methyltransferase 1 homolog (S. cerevisiae) (MRM1)
           [Danio rerio]
          Length = 321

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 26/262 (9%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHP 90
            + S+     E   ++GV     AL    R    L         ++A+ R+  +A +   
Sbjct: 52  RKDSQPNQDKEFEIVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEA-IRRG 110

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVND 143
             +K V  QT++K+     VHQGL L+ +            +L+      L +VLD V D
Sbjct: 111 VQIKRVNKQTLEKMCD-GKVHQGLCLQASCLGFIKEERPITSLEVKNQRPLWLVLDGVQD 169

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAILRSA     D I+++   S   +  ++K+++G +E +     SNL   ++   
Sbjct: 170 PMNLGAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKV 229

Query: 204 SWGFQTIGL-------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH- 255
             G+Q +G        S  +         +    L++G EG GL  + ++    +  +  
Sbjct: 230 EEGWQVVGTVGLEEGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLITIPP 289

Query: 256 ---MPGIIKALNVSNAAAVALY 274
              M   +++LNVS A  + L+
Sbjct: 290 RRHMHPGVESLNVSVATGILLH 311


>gi|311113579|ref|YP_003984801.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
 gi|310945073|gb|ADP41367.1| SpoU rRNA methylase family protein [Rothia dentocariosa ATCC 17931]
          Length = 290

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 105/253 (41%), Gaps = 4/253 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R Y  +     +S                V  AL+   R +  L++ K A    D     
Sbjct: 36  RYYTHLTDVRLRSALEPDWGIYIAESSKVVRRALHAGHRPLSFLMSEKWADDLSDVLTKY 95

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            +  P      + +++I G       LA    P      D +  +  + +L+ + D  N+
Sbjct: 96  -NNIPAFVGSEEELERITGFHLHRGALAAMARPAPQTVEDIIYGAHRVAILEDIVDHTNV 154

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ T R +        + + G +  +P+ RI+     L+ +H  GF
Sbjct: 155 GAIFRSAAALGVDAVLITPRCADPLYRRSIRVSMGTVFQVPWARITRWPKDLEILHEHGF 214

Query: 208 QTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++  L+ D       ++    + K+ALILG EG GL P T         + M   + +LN
Sbjct: 215 ESAALALDEDSLTLGQLSARQDKKLALILGTEGHGLSPHTLAQTKHTVMIPMTHGVDSLN 274

Query: 265 VSNAAAVALYITQ 277
           V+ A+AVA + T+
Sbjct: 275 VAAASAVAFWETR 287


>gi|21909794|ref|NP_664062.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28896513|ref|NP_802863.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|306827961|ref|ZP_07461228.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|21903979|gb|AAM78865.1| putative spoU rRNA Methylase family protein [Streptococcus pyogenes
           MGAS315]
 gi|28811767|dbj|BAC64696.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
 gi|304429880|gb|EFM32922.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 245

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 103/231 (44%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A     +    +   +    RL  +  L        V PQ + ++
Sbjct: 23  RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMAERLAGEQELV------IVSPQVLKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               +  QG+  E            +     +VL+ V DP N+G I+R+A A   DG+  
Sbjct: 76  TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R +++    +++  +    +  +   K    + +
Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191

Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|76809686|ref|YP_333959.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|76579139|gb|ABA48614.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710b]
          Length = 281

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 112/264 (42%), Gaps = 7/264 (2%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DS  A   R++  YK++++    +    + E   L G H  SA L+   +    +  T  
Sbjct: 18  DSMKAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDG 76

Query: 77  ALARLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           ALA  +    +    P + V  P  +   +       GL L  A   +P L A R +   
Sbjct: 77  ALAHEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTS 134

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      + 
Sbjct: 135 VVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDA 194

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++++           S   + +        +A + G EG G+  + +E AT    + 
Sbjct: 195 GTLIERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIP 251

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
            PG +++LNV+ AAAV L+     
Sbjct: 252 QPGGMESLNVAAAAAVCLFEQCRQ 275


>gi|187735575|ref|YP_001877687.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425627|gb|ACD04906.1| RNA methyltransferase, TrmH family, group 3 [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 193

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 22/207 (10%)

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           +    R     + P    VK +  + +D I+ K +                        L
Sbjct: 9   EQEARRNKHVRSAPSKIAVKALGEEVLDGILDKSSN----------------------PL 46

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           L++LD V DPHN+GAILR+A     D +I  +  S   +  + + + GA E +P+I+++N
Sbjct: 47  LLILDCVQDPHNLGAILRTADGAGVDAVIAPRDKSVGITETVLRVSVGAAEKVPFIQVTN 106

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   ++++ S G    G S    + L +       AL++GAEG+G+R  T+E    +  +
Sbjct: 107 LARTMKQLQSRGIWIFGTSDKGDRGLYETDFTGPAALVMGAEGEGMRRLTEENCDFLLRI 166

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M G I  LNVS A  V LY      +
Sbjct: 167 PMKGSIPCLNVSVATGVCLYEMVRQRS 193


>gi|295101732|emb|CBK99277.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
          Length = 275

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 8/258 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     ++R   +           +  AL+   + +  L+  K          +   
Sbjct: 18  YARLTQNQLRNRLEPEKGIFIAESPKVIDRALDAGYKPVSLLMERKQITGPAAGILSRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + + ++ G E     L     P   P  +  +N++ + VL+ + D  N+GA
Sbjct: 78  DAPVYTADREMLAELTGFELTRGVLCAFRRPAPRPVEELCKNARRVAVLEGIVDSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-----IRISNLTDALQKMHS 204
           I RSA A + D ++              + + G +  +P+              +  +HS
Sbjct: 138 IFRSAAALNMDAVLINPSCCDPLCRRAVRVSMGTVFQVPWGQLGETPADWPEKGMDILHS 197

Query: 205 WGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF+T  ++ SD    ++ E   K  K+A++LG EG GL   T  +      + M   + 
Sbjct: 198 LGFKTAAMALSDRSVSIDDEQLAKEPKLAIVLGTEGDGLAAGTIASCDYTVKIPMSHGVD 257

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A+AVA +     
Sbjct: 258 SLNVAAASAVAFWQLGKQ 275


>gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 255

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 10/255 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++ +K   S   K +   +    F+ G   +     N  R I Q+  ++     +    
Sbjct: 7   QNQIFKDALSLQNK-KLRDKNGLFFVEGKKQIYEIPKN--RTIKQIFISEKYKNDVTNLK 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N      V  +      K+   ++  QG+            D ++NS L ++L+++ DP 
Sbjct: 64  N------VIMLSNHLFSKLSATKS-PQGIMAIVEKKYYAVEDIIKNSGLFILLENIQDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA AF    +  +K  +   S    ++  G++ H+P I   N+ + L  M + 
Sbjct: 117 NLGTIIRSADAFGAKAVFVSKGSADIYSDKTIRATMGSIFHLPIIDSINIKNTLNLMKNK 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  S   +K L      +K A ++G E  GLR +T+ +A ++  ++MPG  ++LN 
Sbjct: 177 KISVFAASLKGEKYLNDIKFPNKSAFVIGNEANGLRSETENSADTLVKIYMPGNTESLNA 236

Query: 266 SNAAAVALYITQNHF 280
           + AA++ +Y    + 
Sbjct: 237 ATAASIIMYEAAKNR 251


>gi|291523643|emb|CBK81936.1| rRNA methylases [Coprococcus catus GD/7]
          Length = 274

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 10/260 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +  + + Q  N+K    +            +  AL+     I  L+  K+   +      
Sbjct: 18  YARWTENQLLNRKDPDNA---MFIAESPKVIQTALDAGYEPISCLVEKKHVEGQAAPILA 74

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                PV T     + ++ G       L +     L    D  +N++ + +L+ V +P N
Sbjct: 75  QCGDIPVYTAEFDVLTQLTGFGLTRGMLCVMRRKGLPSVEDVCKNARRIAILEDVMNPTN 134

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKM 202
           +GAI RSA A   DGI+ T   S        + + G +  IP+     ++S    A+ ++
Sbjct: 135 VGAIFRSAAALGMDGILLTSASSNPLYRRAIRVSMGTVFQIPWTFMDSQMSWPEPAVGRL 194

Query: 203 HSWGFQTIGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           H  GF+   ++ D         Q +  +K+A++LG EG GL   T         + M   
Sbjct: 195 HEMGFKIAAMALDDNSVSIDDPQLVHEEKLAIVLGTEGDGLAANTIADCDYTVKIPMYHG 254

Query: 260 IKALNVSNAAAVALYITQNH 279
           + +LNV+ A+AVA +  +  
Sbjct: 255 VDSLNVAAASAVAFWEMRRR 274


>gi|195978751|ref|YP_002123995.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867931|ref|YP_002743879.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|195975456|gb|ACG62982.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225701207|emb|CAW98137.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 245

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 102/232 (43%), Gaps = 14/232 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A  +    I  +   +    RL           V  V P+ + ++
Sbjct: 23  RKHSYLIEGWHLFEEAQRSGQELIH-IFVLEEMAERLSGFDQ------VVIVSPEILKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E          +     L+  L+ + DP N+G I+R+A A + DG+  
Sbjct: 76  TSS-PNPQGIIAEVKFCQQALPTSYAGKYLI--LEDIQDPGNLGTIIRTADAANFDGVFL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R +++    Q M       +  +  S+  ++ + 
Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDIYQVSQAMQQQKIPVLATTL-SQDSIDYKD 190

Query: 225 KNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +  +AL+LG EG+G+ P+    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 191 LSARSSLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIF 242


>gi|149200224|ref|ZP_01877246.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
           HTCC2155]
 gi|149136666|gb|EDM25097.1| RNA methyltransferase, TrmH family, group 3 [Lentisphaera araneosa
           HTCC2155]
          Length = 197

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 1/167 (0%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           L+    L   L++ + +  +++LD V DPHN+GA +R+A     D +I  K  +   +  
Sbjct: 31  LKQEDELESFLES-KKTPFVLILDGVQDPHNLGACIRTANGAGVDAVIIPKDNAAPITDT 89

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           +   + G   +    R+ N+   ++K+   G    G S  + + L        +AL++G+
Sbjct: 90  VMSVSCGGASNTAIFRVVNIARTMEKLKKIGVWIAGTSDKADQDLYNSDLKGPVALVMGS 149

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           EGKG+R  T+E    +  + M G +  LNVS A  V LY      A+
Sbjct: 150 EGKGMRRLTEEKCDFLLTIPMGGTVPCLNVSVATGVCLYEIVRQRAE 196


>gi|126640406|ref|YP_001083390.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 226

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP---LLSP 124
           +F L    +   +       P    V+     +++K+ G    HQG+     P   L   
Sbjct: 4   LFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGL-PFHQGVVAAVRPHPTLNEK 62

Query: 125 TLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            LD +       LL+ LD V DPHN+GA +R+A A     +I  +  S S +    K A+
Sbjct: 63  DLDQLLAETPDALLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAA 122

Query: 182 GALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKG 239
           G  E + +I+++NL   L  +      + IG   D    P+++   +  + +++GAE  G
Sbjct: 123 GGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGAEDTG 182

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LRP TQ      A++ M G +++LNVS A  +ALY      ++
Sbjct: 183 LRPITQAQCDQKAYIPMSGNLQSLNVSVATGMALYEACRQRSE 225


>gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
 gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
          Length = 267

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 5/262 (1%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARL 81
           L   +   K      +K +H  +     + G+H V  AL++ +          K     L
Sbjct: 4   LSPQNARVKGWAQLQEK-KHRDKQNKYVVEGIHLVQEALSSGADIECIAYDMDKGIPLEL 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               +         V    I K+    +     A+            +R + L++VLD +
Sbjct: 63  RQIPDRGQGAEWIGVSHAVISKVSDTPSPQPVFAVVRKEARQWQDLIMRENGLVIVLDGL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R A A    G+I  +  +   +    +S  G+L H+P +    L   L +
Sbjct: 123 QDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTMGSLFHLPVLE-GELLSILPE 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G + +    + K+   +        +++G+EG+G+ P+          + MPG  +
Sbjct: 182 ARERGARLVTTMLEGKRSCFEYDFRGTSWIVIGSEGRGVSPEVAAIVDDAIRIPMPGQAE 241

Query: 262 ALNVSNAAAVALYI--TQNHFA 281
           +LN + AA+V +Y    Q H+A
Sbjct: 242 SLNAAMAASVLMYEALRQRHYA 263


>gi|157150531|ref|YP_001449839.1| spoU rRNA methylase family protein [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075325|gb|ABV10008.1| spoU rRNA Methylase family protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 246

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 12/233 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    AL++ +  +  + A       L           V  + P  +  +
Sbjct: 24  RTDSYLIEGWHLFEEALSSGAE-VISIFALPEYADHLSGCKQ------VYWLSPDLLRDL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E         + +    L   L+ V DP N+G I+R+A A   DGI  
Sbjct: 77  ADS-KTPQGIVAEVRLQQEVLPEKLSGKYLF--LEDVQDPGNLGTIIRTADAAGFDGIFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQE 223
           ++  +   +    +S  G+  H+P  R++   D +               SD     E+ 
Sbjct: 134 SEHSADLYNLKTLRSMQGSHFHLPIYRLA-TADLIDLAKKSDLPIFASTLSDDSIDYEKL 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +    L++G EG+G+    +  A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 193 KGSQNFILVMGNEGQGISSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245


>gi|257869609|ref|ZP_05649262.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257803773|gb|EEV32595.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 255

 Score =  206 bits (524), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 102/259 (39%), Gaps = 10/259 (3%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +     L + +   K+++   QK ++ +Q     + G H V  A+   +  I  L  T  
Sbjct: 2   NRMKEILSKKNILIKEVKKLAQK-KYRNQTNTYIIDGWHLVQEAIAASA-PINYLFVTDK 59

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            +              V  +  +     +      QG+            + +  +   +
Sbjct: 60  GIQETGNQLKDYQD-KVFRISDEV-AAFLSDLPTPQGIFAVIE--KETVQETIHGN--WL 113

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD+V DP N+G ++R+A A    G+      +   S  + +S  G+  H+P +   ++ 
Sbjct: 114 ILDNVQDPGNVGTMIRTADAAGFAGVFLGTGTADRYSTKVLRSMQGSNFHLPILE-GDVP 172

Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             +QK+ + G    G   +       +  K    A ILG EG+G+ P          ++ 
Sbjct: 173 AFIQKLKAQGTAIYGTELNKEAVSYTELSKKGTAAFILGNEGQGVHPDILGLTDQNVYIP 232

Query: 256 MPGIIKALNVSNAAAVALY 274
           + G  ++LNV+ AA + +Y
Sbjct: 233 IYGQAESLNVAIAAGILMY 251


>gi|284989250|ref|YP_003407804.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
           obscurus DSM 43160]
 gi|284062495|gb|ADB73433.1| RNA methyltransferase, TrmH family, group 3 [Geodermatophilus
           obscurus DSM 43160]
          Length = 319

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 17/241 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNN--PSRKIFQLL-----ATKNALARLDWDANLPHPFPVK 94
             ++     L G + V  AL    P+  ++ +      AT   +      AN     P+ 
Sbjct: 67  QRAEEAPELLLGRNPVVEALRAEIPATALYVVTGDARTATDERITEALHLAN-DRGLPLL 125

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNI 147
            V     D++    A+HQG+ L+  P      D + +         L++ +D V DP N+
Sbjct: 126 EVGKAEFDRM-SNGALHQGIGLQVPPYQYAHPDDLLDLARDSGRPPLVVAMDGVTDPRNL 184

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA++RSA AF   G++  +R S   +A   ++++GA   +P  R  NL  AL      G 
Sbjct: 185 GAVVRSAAAFDAHGVVVPQRRSVGMTASAWRTSAGAAARLPVARAVNLARALASYQDAGL 244

Query: 208 QTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            T+GL+ D    L       D +AL++GAEG GL    +E    +  + +    ++LNVS
Sbjct: 245 MTVGLAGDGDVDLHDFDGFPDPLALVVGAEGAGLSRLVRERCDVVVRIPIARDTESLNVS 304

Query: 267 N 267
            
Sbjct: 305 V 305


>gi|50913671|ref|YP_059643.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|50902745|gb|AAT86460.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
          Length = 245

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A     +    +   +  + RL  +  L        V PQ + ++
Sbjct: 23  RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMVERLAGEQELV------IVSPQVLKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               +  QG+  E            +     +VL+ V DP N+G I+R+A A   +G+  
Sbjct: 76  TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFNGVFL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R +++    +++  +    +  +   K    + +
Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYKTPILATTLSKKSVDYKSL 191

Query: 225 -KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             ++++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 TYHERLALVLGNEGQGISAEMVALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 260

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 102/255 (40%), Gaps = 18/255 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWD 84
           K ++S  + +RH  +  +  + GV  V+ AL   +     L A      T    A L+  
Sbjct: 13  KWLRSLAESARHRRRERSFVIEGVRLVTDALTAGAEVRLVLYAPDQLATTTAGTALLNRL 72

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +LPH FP     P  I      E     +A  T P L P         L +VLD + DP
Sbjct: 73  RHLPHCFP---ATPAVIVAAADTEQPQGVVAAVTWPELPP------RPGLRLVLDAIQDP 123

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G +LRSA A     ++         +  +A++A GA   +P  R+S       ++ S
Sbjct: 124 GNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMGAHFLVPL-RVSPWETIRAELQS 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             +      S  ++P          ALI+G E  GL    +  A     + M G I++LN
Sbjct: 183 --YTVYAADSAGQQPYYAVDWRQPAALIVGNEAHGLSEPARALAHQTITIPMSGSIESLN 240

Query: 265 VSNAAAVALYITQNH 279
              A ++ L+     
Sbjct: 241 AGVAGSIILFEALRQ 255


>gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           ATCC 14018]
          Length = 331

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 29/300 (9%)

Query: 5   SKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           + K  ++++     +  A ++R   D  ++ +  +  +  +  + L + G +    AL  
Sbjct: 25  TPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGTDSDELVI-GRNAALEALRV 82

Query: 64  --PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             PS +++       +   R            +       +D+I      HQG+ L+  P
Sbjct: 83  GVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIILKVQP 141

Query: 121 LLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L  + +                       L + LD V DP N+GA++RSA AF  
Sbjct: 142 YQYYSLQELVDRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAAFGA 201

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL     K 
Sbjct: 202 NGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKL 261

Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + E   + D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY   N
Sbjct: 262 VGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVAN 321


>gi|301059011|ref|ZP_07199977.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
           NaphS2]
 gi|300446892|gb|EFK10691.1| RNA methyltransferase, TrmH family, group 3 [delta proteobacterium
           NaphS2]
          Length = 278

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 98/240 (40%), Gaps = 11/240 (4%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLP--HPFPVKTVPPQTIDKIVGKEA 109
           G   V   L +      ++   +    AR      L      PV       +  I+ K+ 
Sbjct: 33  GFQAVRDTLQSKDGTFREIWIAEGKSSARTQEIIKLATSKNIPVHFKQRHYLSDIL-KDM 91

Query: 110 VHQGLALETAPLLSPTLDAVRNSQL-------LMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            HQG+              +  S L       L+V DH+ D  N+GA++R+A  F   G+
Sbjct: 92  AHQGIVGIADAFDYSNFHLLLKSALEAGPSALLLVADHITDSGNLGALMRTAAFFGAHGL 151

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +  + K +SGA   +P  R++NL+ AL ++       +G + ++++ +  
Sbjct: 152 IIPKDRSAGITPTVLKRSSGAHTKLPVARVTNLSRALNELSRNELWIMGAAGEAEESIYD 211

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + L+LG E KGL P  ++    +  +  PG   +LN+S A  V L        K
Sbjct: 212 FDWRRPLVLVLGNERKGLSPSARKQCHGLVSIPSPGNTDSLNISVAGGVILSEICRQRQK 271


>gi|291546244|emb|CBL19352.1| rRNA methylases [Ruminococcus sp. SR1/5]
          Length = 274

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 7/254 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +R   +           +  AL++  + I  L+  K+             
Sbjct: 18  YARISEIQLLNRAEPEKGIFIAESPKVIERALDSGCQPISFLVEHKHVEGEAKELIRRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + ++ G +     L     P L   +D  +N++ + VL++V +P NIGA
Sbjct: 78  DIPVYTAEFDVLTQLTGFKLTRGMLCAMRRPALPDIVDVCKNARRIAVLENVVNPTNIGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQKMHSW 205
           I RSA A   D ++ T   S        + + G +  IP+      T+     ++ + + 
Sbjct: 138 IFRSAAALGMDAVLLTPGCSNPLYRRAIRVSMGTVFQIPWTFFDEKTEWKTEGIRSLKAM 197

Query: 206 GFQTIGLSSDSKK-PLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF+T  ++       ++    +  +K+A++LG EG GL  +T         + M   + +
Sbjct: 198 GFKTAAMALREDSFDIDDPHLMAEEKLAVVLGTEGDGLASETIADCDYTVCIPMAHGVDS 257

Query: 263 LNVSNAAAVALYIT 276
           LNV+ A+AVA +  
Sbjct: 258 LNVAAASAVAFWQL 271


>gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
 gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
 gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
 gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
          Length = 254

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 13/239 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTI 101
             +    F+ G  +V  AL +     + ++             ++P   F +     +  
Sbjct: 23  RYEEGLFFVEGTTSVLEALKSNFEIEYIVMGE-------GVKIDIPTGNFKIVHTTERVF 75

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            KI       Q +              +++  + ++ D++ DP N+G I+R+A AF    
Sbjct: 76  KKISDT-VTPQMVMAIIKIPKYEEDTYIKDKGIYIIADNIQDPGNLGTIIRTADAFGASA 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I T        +  + +++ G++ HIP I  ++    L K+   G +       ++K + 
Sbjct: 135 IFTINNCVDVFNPKVLRASMGSIFHIPVIVTAS--QILLKLKQRGIKVFATHLKARKLVH 192

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   +DK+A +LG E KG+     +       + M G  ++LNVS AA + LY +Q   
Sbjct: 193 ECNISDKVAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAAGIFLYESQRQR 249


>gi|257087434|ref|ZP_05581795.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
 gi|257416641|ref|ZP_05593635.1| 23S rRNA methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257419857|ref|ZP_05596851.1| rRNA methylase [Enterococcus faecalis T11]
 gi|257421954|ref|ZP_05598944.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|256995464|gb|EEU82766.1| 23S rRNA methyltransferase [Enterococcus faecalis D6]
 gi|257158469|gb|EEU88429.1| 23S rRNA methyltransferase [Enterococcus faecalis ARO1/DG]
 gi|257161685|gb|EEU91645.1| rRNA methylase [Enterococcus faecalis T11]
 gi|257163778|gb|EEU93738.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|315025411|gb|EFT37343.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX2137]
 gi|315155336|gb|EFT99352.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0043]
 gi|315173665|gb|EFU17682.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1346]
          Length = 258

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 103/239 (43%), Gaps = 5/239 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H V  A+   +   + L   +       W A       +  V  + +
Sbjct: 23  YREELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWRTWLAEQETEKLI-FVSDEVL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + +  +    QG+      L +    ++      ++LD++ DP N+G ++R+A A    G
Sbjct: 82  NSL-SELPTSQGILAIVT-LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPL 220
           +I  K  +   +  + +S  G+  H+P ++   LT+ +Q     G    G    ++    
Sbjct: 140 VILGKGTADIYNTKVLRSMQGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAY 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 199 YEQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|209523883|ref|ZP_03272435.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
 gi|209495555|gb|EDZ95858.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
          Length = 259

 Score =  205 bits (523), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 18/271 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           + SL++    ++R+ H            ++   +     L G H + AA       I  L
Sbjct: 2   LTSLQNPLVKQIRQLHT-----------AKARREEGLFILEGTHLIEAACAVNWE-IITL 49

Query: 72  LATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T     R    W+         + V  + I  +        G+              V
Sbjct: 50  CCTPQWQERHPELWELAAKTADRTEQVSDRLIVAMT-TTVNPDGVVAIARRQDQTP---V 105

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L +VL+ V DP N+G ++R+A A   +G+  +          + ++++GA   +P 
Sbjct: 106 PITSLGLVLETVQDPGNLGTMIRTATAAGVEGLWLSSDSVDPTHPKVLRASAGAWFEVPI 165

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              S+L   L      G Q +   +D+     +       A++LG EG GL P     A 
Sbjct: 166 AVHSDLITQLSNSQKQGIQVVATRADASLSYWEIDLRQPTAIVLGNEGSGLSPDLNSLAD 225

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + + G +++LNV+  AA+ LY  Q   
Sbjct: 226 YHIRVPLLGNVESLNVAICAALILYEAQRQR 256


>gi|322387093|ref|ZP_08060704.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
 gi|321142080|gb|EFX37574.1| SpoU rRNA methylase [Streptococcus infantis ATCC 700779]
          Length = 246

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 112/277 (40%), Gaps = 33/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                     +  + G H    A
Sbjct: 1   MTIITSKANSVVKNTKKLHQKKYRKS---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   + KI ++ A      +L     + +P  V       +D  +      QG+      
Sbjct: 40  VQAGA-KIEKIFALVEYGDKL-----VDYPQTVFVAEEILLD--LADSQTPQGIVAIVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L   L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEEQLPDLSQGKYLF--LEDVQDPGNVGTIIRTADAAGFSGVIVSSKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  R+  +   +++        +  + S + K   +  + +  AL++G EG+G
Sbjct: 150 QGSHFHLPIYRMP-VETFVEEAKKNHLPILATTLSQNSKDYRELDRLEDFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + P   + A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 209 ISPFMTDQADQLVHISMKGQAESLNVAIAAGILMFYL 245


>gi|110597055|ref|ZP_01385344.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
           13031]
 gi|110341246|gb|EAT59711.1| RNA methyltransferase TrmH, group 3 [Chlorobium ferrooxidans DSM
           13031]
          Length = 248

 Score =  205 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 7/238 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV--GK 107
            +YG + V   L      I ++    N       +  +             ++K+     
Sbjct: 9   IVYGRNAVLELLQQKPESIEKIYFQFNTAHPKLKEIIIGARRQKIVTGKARLEKLSLIAG 68

Query: 108 EAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+    + +   +LD V      +S LL+VL  ++DPHNIGAI+R+A A + D +
Sbjct: 69  TTKHQGVCALISTVTYYSLDEVLASPRNSSPLLVVLQGLDDPHNIGAIIRTAEAVAADAV 128

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +      +AV+ K+++GAL H+   ++ +L  AL+ +H    Q I    D++     
Sbjct: 129 VLVEGKGSPVNAVVHKASAGALSHMRICKVKSLVRALEYLHEKDIQVIAADMDAELNYND 188

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  A++LG EG G+ P+  +    +  + M G +++LNVS  A V LY +    
Sbjct: 189 ADMKRATAIVLGMEGSGIAPEALKFCDHVVRIPMAGCVESLNVSVTAGVLLYESMRQR 246


>gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
 gi|156867100|gb|EDO60472.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
          Length = 270

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 108/258 (41%), Gaps = 4/258 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K      + ++   Q E     GV     A      +I ++  T+ AL R   
Sbjct: 7   SKENPAVKHAARLLKSAKFRRQEEAFLAEGVRLCRDA-AYSGVRILRMFYTEEALERYPK 65

Query: 84  DANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHV 141
           D  L      +  +  Q +   +      QG+    A L     LD +  S  L+ L+ +
Sbjct: 66  DVELLREKAERAFLLSQQLAGGLSATVTPQGIFCVCAMLDKTDCLDKMDASGQLLGLEDI 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LR+A A    G+I T+      S  + + + GA+  +P   +  +  A+  
Sbjct: 126 QDPSNLGTVLRTAEALGIGGVILTRGCCDIYSPKVLRGSMGAVFRLPMALVETMPPAVNA 185

Query: 202 MHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   GF T+    D   +P+ Q + +    +++G EG GL+P+T         + M G  
Sbjct: 186 LEQKGFVTMAAVPDREAEPITQVLFSSPSIVLVGNEGNGLKPETIRACQRRVTIPMLGRA 245

Query: 261 KALNVSNAAAVALYITQN 278
           ++LN S AA++ ++    
Sbjct: 246 ESLNASVAASLLMWEMMR 263


>gi|146329073|ref|YP_001209512.1| RNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|146232543|gb|ABQ13521.1| RNA methyltransferase, TrmH family, group 3 [Dichelobacter nodosus
           VCS1703A]
          Length = 242

 Score =  205 bits (522), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVPPQTIDK 103
            +++ G+H +  ALN+ +  + +L  ++      LA L  DA       + TVP   ID 
Sbjct: 3   TIWIGGIHALRQALNDGN--LLRLEVSEGKTSKNLASLVADAKAAQ-IEIITVPRHYIDH 59

Query: 104 IVGKEAVHQGLA----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  +  HQG+A    L           +      ++VLD + DPHN+GA LR+A+A   
Sbjct: 60  RL-PDVRHQGIAGECRLSAQASNWQQAISGVERPFILVLDSIQDPHNLGACLRTAMAAGV 118

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++     +   + V+ K A GA E +   R++NL   ++ M   G   +G + +++K 
Sbjct: 119 DAVVLPNSCAADITPVVRKIACGAAEALAIFRVANLKREVEMMKEKGLWVVGGAGEAEKS 178

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  + +I+G E KG+    ++T   +A + M   +++LNVS A  + L+  +  
Sbjct: 179 LFDLDLSGGLVMIVGNEEKGIHYGLRQTCDWLAAIPMAETMESLNVSVACGIMLFEARRQ 238

Query: 280 F 280
            
Sbjct: 239 R 239


>gi|104774335|ref|YP_619315.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423416|emb|CAI98289.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 260

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 115/261 (44%), Gaps = 13/261 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+RL    
Sbjct: 8   NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHV 141
                  +  +       +       Q + +     ++  ++  ++        ++LD +
Sbjct: 66  LAYDEGKLIKISQSVASHLSST-KNSQDIFMTVKINMTVKINRPKHFAFSYGKWVLLDDL 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+ ++L DA+  
Sbjct: 125 ADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIAS 183

Query: 202 MHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + +          D + K L       ++ALI+G E  G+ P+ +  A    ++ + G  
Sbjct: 184 LKAADIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRA 243

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN + AA + +Y    HF+
Sbjct: 244 ESLNAAVAAGIMIY----HFS 260


>gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 289

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 106/275 (38%), Gaps = 20/275 (7%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           ++ S++       RR  +     ++F  + R           G   V  AL  P   + +
Sbjct: 5   ELTSIRSPRVKSARRLAK-----RTFRHRERR------FLAEGPQAVREALGLPG-VLTE 52

Query: 71  LLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           L  T  A +R             PV  V  + + ++  +    QGL      +     DA
Sbjct: 53  LFTTAEAESRHAELVTAAERAGVPVLRVSGEVMAELA-QTVTPQGLLGVCTFVDVSLADA 111

Query: 129 VRNSQLLM-VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +     L+ VL HV DP N G +LR+A A  CD ++ T       +    ++++G+L H+
Sbjct: 112 LSPPPTLVTVLAHVRDPGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAGSLFHV 171

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPK 243
           P +  +     +  +   G   +      +  L+  +         A + G E  GL  +
Sbjct: 172 PVVAGTRFETLIGALRECGLTVLAADGAGEHTLDAALDGGLLDRPTAWVFGNEAWGLPEE 231

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  +  + + G  ++LN++ AAAV LY +  
Sbjct: 232 ILRAVDHVVRVPIYGRAESLNLATAAAVCLYASAR 266


>gi|15674507|ref|NP_268681.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71910113|ref|YP_281663.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94987928|ref|YP_596029.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94991812|ref|YP_599911.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|13621609|gb|AAK33402.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
 gi|71852895|gb|AAZ50918.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|94541436|gb|ABF31485.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94545320|gb|ABF35367.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
          Length = 245

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 104/231 (45%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A     +    +   +  + RL  +  L        V PQ + ++
Sbjct: 23  RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMVERLAGEQELV------IVSPQVLKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               +  QG+  E            +     +VL+ V DP N+G I+R+A A   DG+  
Sbjct: 76  TDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R +++    +++  +    +  +   K    + +
Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYQLCRELQEYETPILATTLSKKSVDYKSL 191

Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|222099913|ref|YP_002534481.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
           DSM 4359]
 gi|221572303|gb|ACM23115.1| RNA methyltransferase, TrmH family, group 3 [Thermotoga neapolitana
           DSM 4359]
          Length = 216

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 87/195 (44%), Gaps = 5/195 (2%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPH 145
                     + + ++ G +  HQG+  +       +++ +   +   L+++LD + DPH
Sbjct: 18  RGIRYSFESEENLRRLSGTKK-HQGVVFDIQEYRYSSVEEILESKTPPLIVILDQIQDPH 76

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI+R++V    +GII  K  S   +  + K ++G +       ++NL   ++++   
Sbjct: 77  NLGAIVRTSVGAGANGIIIPKDKSVKVTETVVKVSAGTVFRAKIAIVTNLARTIEELKER 136

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G        +   P+ +E      A + G EG+G+R   +E    +  + M   I +LNV
Sbjct: 137 GVWVYASDVNG-TPIYEEDFTLPTAFVFGNEGEGIRRLVKEKCDRVLTIPMENDIDSLNV 195

Query: 266 SNAAAVALYITQNHF 280
           S +  + L+      
Sbjct: 196 SVSVGIVLFEAVRQR 210


>gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
           metalliredigens QYMF]
          Length = 272

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 8/258 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLP 88
           K ++  + + ++  + +   + G+  V     +       L                 L 
Sbjct: 16  KHIKGLSLR-KNRIKHQQFTIEGLRIVEECFLHGGPIDHILYCDHIHQVQGGPHLLEKLK 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--PTLD-AVRNSQLLMVLDHVNDPH 145
             +P          KI   E   QG+            +LD   + +  ++VLD + DP 
Sbjct: 75  EKYPCHQTMDSLFLKIADTE-TPQGIIAVVEMKNHQLESLDLEKKENPFIVVLDEIQDPG 133

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A     D II TK      ++   ++  GA+ H+P I+ +N  + +  + + 
Sbjct: 134 NLGTIIRTAEGAKTDAIILTKGCVDPYNSKSIRATMGAIFHLPIIQSNNNEEWIYYLKAN 193

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             + +  + ++ K   Q   N+ IA+I+G E +G+ P           + + G I++LN 
Sbjct: 194 AVKLVASTLETDKNHFQLDYNNPIAMIIGNEARGIHPDILAQVDERVKIPILGKIESLNA 253

Query: 266 SNAAAVALYI-TQNHFAK 282
           S AA + +Y   Q  F K
Sbjct: 254 SVAAGILIYQGIQGRFLK 271


>gi|162451975|ref|YP_001614342.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161162557|emb|CAN93862.1| tRNA/rRNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 248

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 11/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGK 107
            +YG+  V  A+     ++  +L  ++   +LD  A L      P +  P   +D+    
Sbjct: 4   LVYGLQPVREAIRAHGARVGWVLVQRDGGPKLDALARLAEGQGIPTERAPRNELDRRSA- 62

Query: 108 EAVHQGLALETAPLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
              HQG       L    +D +            + + LD V DP N GA++RSAVA   
Sbjct: 63  GGRHQGAVASAPELQIVGVDEIPVVEEGQPGAGTITVALDGVMDPQNFGAVIRSAVALGA 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+  +  S   +    ++++GA+EH    R+ +L DAL+ + + G   I L +     
Sbjct: 123 RAILWPEHSSAPLTPATFRASAGAIEHARLCRVPSLPDALEALAARGVAAIALDAQGPVE 182

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +      +A+++GAE KG R   +     +A L M G I +LN S A A+ALY     
Sbjct: 183 LGELPLTGPVAIVIGAEDKGTRRSVRRVCQHVARLPMTGPISSLNASVAGAIALYEVVRQ 242

Query: 280 F 280
            
Sbjct: 243 R 243


>gi|288906003|ref|YP_003431225.1| rRNA methylase [Streptococcus gallolyticus UCN34]
 gi|288732729|emb|CBI14303.1| putative rRNA methylase [Streptococcus gallolyticus UCN34]
          Length = 246

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 12/233 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A      +   +   +      D+   + H   V  V P+ + ++
Sbjct: 24  RDHSYLIEGWHLFEEA-EKAGAEFLNIFVLE------DYADRVSHFSMVTYVTPEVLKEL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A    P  D    +   +VL+ V DP N+G ++R+A A   DG++ 
Sbjct: 77  TDS-KTPQGIIAELAMPSLPLADL--KAGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  H+P  R +++ +A QK+ +     I  + S      +  
Sbjct: 134 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYEACQKLQNLDVPLIATTLSKESVDYKTI 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             N   AL++G EG G+     + A  +AH+ MPG  ++LNV+ A  + L+  
Sbjct: 193 EHNGDFALVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245


>gi|116516909|ref|YP_817193.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae D39]
 gi|172079590|ref|ZP_02709224.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
 gi|116077485|gb|ABJ55205.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae D39]
 gi|172042492|gb|EDT50538.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC1873-00]
 gi|332199399|gb|EGJ13476.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47368]
          Length = 246

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSPA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|332523947|ref|ZP_08400199.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315211|gb|EGJ28196.1| RNA methyltransferase, TrmH family [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 245

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 110/272 (40%), Gaps = 33/272 (12%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           IS K +  I   K   + K R++                     +  + G H    A   
Sbjct: 3   ISSKANPIIKQSKKLLHKKYRKD---------------------SYLIEGWHLFEEA-KK 40

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                  +   ++ + R+  D        V  V P+ + ++       QG+  E      
Sbjct: 41  AQVSFLHIFVLEDYVDRVAADGK------VIVVTPEVLKELTDS-PTPQGIVAEVKQEQL 93

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                 +   LL  L+ V DP N+G ++R+A A   DG++ +++ +   +    +S  G+
Sbjct: 94  DLPSIGKGKYLL--LEDVQDPGNLGTMIRTADAAGFDGVLLSEKSADIFNQKTLRSMQGS 151

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRP 242
             HIP  R +++    + M S     +  +   +    +++       L++G EG+G+  
Sbjct: 152 HYHIPVWR-TDIYAFCETMKSKEMPILATTLSEQSIDYKQLGTLTDFILVMGNEGQGIST 210

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K  E ++ + H+ MPG  ++LNV+ AA + ++
Sbjct: 211 KMAEHSSQLVHISMPGQAESLNVAVAAGILIF 242


>gi|309810976|ref|ZP_07704774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308434940|gb|EFP58774.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 270

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 100/258 (38%), Gaps = 13/258 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K++++  ++S    +     + G   V   +      I  +    +A  R      L   
Sbjct: 11  KQVKALGRRS-ARDKAGLFLVEGRQAVRELIRFAPMSIRDVYLDADAAERHPDLRELAGE 69

Query: 91  FP----------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLD 139
           +           V    PQ +  +   E   QG+     P+  P  D +  S   +++  
Sbjct: 70  WADGAAAGERRFVHDCSPQVLAAMCDTEQ-PQGIIAVARPIDRPLADVLAGSPKFVVICT 128

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +V DP N G ++R A A   D +I +       +  L +S+ G+L H+P  R S++ +  
Sbjct: 129 NVRDPGNAGTVIRGADATGADAVILSDASVDLYNPKLVRSSVGSLWHLPISRGSSIEEIF 188

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
               + G          +  L         A ++G E  GL P+ +E    +  + + G 
Sbjct: 189 AACRAAGLTLHAADGVGETFLPDVDLATPHAWVMGNEAWGLEPEVREQCDDVVRVPIYGH 248

Query: 260 IKALNVSNAAAVALYITQ 277
            ++LN++ AA V LY + 
Sbjct: 249 AESLNLAMAATVCLYASA 266


>gi|323484883|ref|ZP_08090238.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
 gi|323401764|gb|EGA94107.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14163]
          Length = 266

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 106/263 (40%), Gaps = 13/263 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWD 84
           N+R  + + +  +K++   +     + G    +     P  ++ +   +++ L    +  
Sbjct: 7   NNR-VRSVSALAKKAKIRREQGLFIVEGAKMFAEL---PKDRLKETYVSESFLRQHGEKA 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-------LMV 137
           + L      + V    +  +   +   QG+    A L     + V+   +       LM+
Sbjct: 63  SKLLQGICFEEVSDDVMKYMSDTQ-TPQGILAVAAQLSHSLNEIVKGDGIKRNSPAHLMI 121

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + DP N+G ILR+       G++     +   +  + +S  G++  +P++ + +   
Sbjct: 122 LETIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQQ 181

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           AL ++ + G +        K   E E        ++G E  GL  +T   A     + M 
Sbjct: 182 ALGRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMA 241

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G +++LN + AA++ ++ T    
Sbjct: 242 GQVESLNAAVAASILMFETARQR 264


>gi|332299037|ref|YP_004440959.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           brennaborense DSM 12168]
 gi|332182140|gb|AEE17828.1| RNA methyltransferase, TrmH family, group 3 [Treponema
           brennaborense DSM 12168]
          Length = 262

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 101/256 (39%), Gaps = 28/256 (10%)

Query: 50  FLYGVHTVSAALNNPSRK------IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + G H V   +   + +      +    A      +    A      P K      +DK
Sbjct: 5   IVTGFHAVEEYVRRAAVQEKQPAALQLFYAAPGPRVKKILAAAEKAGIPCKKTESGELDK 64

Query: 104 IVGKEAV----HQGLALETAPLLSPTLDAVR--------------NSQLLMVLDHVNDPH 145
           +    +V    H+G+ L  +     TL+ +                 Q ++VLD V DPH
Sbjct: 65  LTASLSVTAREHRGVVLRVSGAAEETLNRIDFDGYVASVSAPGAAERQTVVVLDSVTDPH 124

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSE---SAVLAKSASGALEHIPYIRISNLTDALQKM 202
           NIGAILRS         +  +R        S V++++++GA   +P    SNL  A+ ++
Sbjct: 125 NIGAILRSCDQLGVSLAVLPERRGVKNVDGSEVISRASAGASAWVPISIASNLVRAVGQL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            + GF   G  S    P+       +  LI+G+EG G+     E    +  +   G + +
Sbjct: 185 KAAGFWIYGADS-GGTPVTDVDFPPRTVLIMGSEGSGISRLLAEQCDRIVSIPTCGKLDS 243

Query: 263 LNVSNAAAVALYITQN 278
           LNVS AA + LY    
Sbjct: 244 LNVSVAAGILLYDIYR 259


>gi|198274931|ref|ZP_03207463.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
 gi|198272378|gb|EDY96647.1| hypothetical protein BACPLE_01090 [Bacteroides plebeius DSM 17135]
          Length = 269

 Score =  204 bits (521), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R   Q           +  AL      +  L   K+               P
Sbjct: 20  LTEAQLRNRIDPQRGIFIAESPKVIRVALEAGYEPVSLLCERKHLTGDAADIVQRMAHLP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + + ++ G       L     P   P  +  R ++ ++V+  V D  NIGAI R
Sbjct: 80  VYTGDRELLARLTGYTLTRGVLCAMRRPAPRPVEEVCRGARRVVVIHGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T       +    + + G++  +P+  +      L+++   GF+T  +
Sbjct: 140 SAAALGIDAVLLTTDSCDPLNRRAVRVSMGSVFLVPWTWVD---RPLEQLKELGFRTAAM 196

Query: 213 SS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  D   PL+     +  ++AL++G EG GL     E A  +  + M   + +LNV+ A+
Sbjct: 197 ALTDRSVPLDYPPLKEEPRLALVMGTEGDGLPEAAIEGADYVVRIPMAHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           AVA +  +
Sbjct: 257 AVAFWELR 264


>gi|209558854|ref|YP_002285326.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
 gi|209540055|gb|ACI60631.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
          Length = 245

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 103/231 (44%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A     +    +   +    RL  +  L        V PQ + ++
Sbjct: 23  RKQSYLIEGWHLFEEA-QKSGQVFRHIFVLEEMAERLAGEQELV------IVSPQVLKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +   +  QG+  E            +     +VL+ V DP N+G I+R+A A   DG+  
Sbjct: 76  IDSPS-PQGIVAEVEIPKLAFPSDYKGK--YLVLEDVQDPGNLGTIIRTADAARFDGVFL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R +N+    +++       +  +   K    + +
Sbjct: 133 SEKSADIYNQKTLRSMQGSHFHLPIWR-TNVYQLCRELQEHKTPILATTLSKKSVDYKSL 191

Query: 225 KN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +++AL+LG EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 192 THHERLALVLGNEGQGISAEMAALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|323693749|ref|ZP_08107946.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323502200|gb|EGB18065.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 266

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 106/263 (40%), Gaps = 13/263 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWD 84
           N+R  + + +  +K++   +     + G    +     P  ++ +   +++ L    +  
Sbjct: 7   NNR-VRSVSALAKKAKIRREQGLFIVEGAKMFAEL---PKDRLKETYVSESFLRQHGEKA 62

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-------LMV 137
           + L      + V    +  +   +   QG+    A L     + V+   +       LM+
Sbjct: 63  SELLQGICFEEVSDDVMKYMSDTQ-TPQGILAVAAQLSHSLNEIVKGDGIKRDSPAHLMI 121

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + DP N+G ILR+       G++     +   +  + +S  G++  +P++ + +   
Sbjct: 122 LETIQDPGNLGTILRAGEGAGITGVVMNSATADIYNPKVIRSTMGSIYRVPFVYVEDWQQ 181

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           AL ++ + G +        K   E E        ++G E  GL  +T   A     + M 
Sbjct: 182 ALGRIKAEGIRLYAAHLKGKVSYENEDYRTDTGFLIGNEANGLTEETAAMADCYVRIPMA 241

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G +++LN + AA++ ++ T    
Sbjct: 242 GQVESLNAAVAASILMFETARQR 264


>gi|266624299|ref|ZP_06117234.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
 gi|288863863|gb|EFC96161.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
          Length = 259

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 7/252 (2%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K++ +  +K++   +       G+         P  +I  L  +++ L +      L  P
Sbjct: 11  KQVMNLAKKAKARKETGLFVAEGLRMFKEI---PRDRIDSLFVSESFL-KNPEGRKLIGP 66

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148
              + V       +       QG+            D +      LLM+LD + DP N+G
Sbjct: 67  LAFEAVADDVFKTMSDTT-TPQGVLALVKQYAYTIDDILDRPGPALLMILDTIQDPGNLG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILR+       G+I     +   +  + +S  G++  +P++  + L   L  +   G +
Sbjct: 126 TILRAGEGAGITGVIMNDTTADIYNPKVIRSTMGSVCRVPFVYTAALPQTLANIKKRGVR 185

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                 + +   E+E        ++G E  GL  +T   A +   + M G +++LN + A
Sbjct: 186 LYAAHLEGRNNYEKEDYTVDTGFLIGNEANGLSSETASMADAYVKIPMMGKVESLNAAVA 245

Query: 269 AAVALYITQNHF 280
           A+V ++      
Sbjct: 246 ASVLMFEAARQR 257


>gi|220912632|ref|YP_002487941.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219859510|gb|ACL39852.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 269

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 104/264 (39%), Gaps = 6/264 (2%)

Query: 19  HYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           HY +   + R  DY  +   + +     +           +  AL    +        + 
Sbjct: 4   HYLESASDPRVSDYTTLTDVHLRKLREPREGMYIAESSRVLRRALAAGHQP-RSFFLAEK 62

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            LA LD         PV       +++I G       +A    P   P  + +  ++ + 
Sbjct: 63  WLADLDDVFQAYPDVPVFIGKAALLEEITGFHLHRGAMAAMERPDPVPLPELLAGARRVA 122

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A   D ++ + R          + + G +  +P+ R+ +  
Sbjct: 123 VLEDIVDHTNVGAIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLESWP 182

Query: 197 DALQKMHSWGFQTIGLSSDS-KKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAH 253
             LQ +   GF    L      + ++       D++AL+LG EG G+ P+T         
Sbjct: 183 QDLQVLKDHGFTVAALELTGDARDVDAVAATNPDRLALVLGTEGAGMSPETLAAVDLAVK 242

Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277
           + M   + +LNV+ A+AVA +  +
Sbjct: 243 IPMRNGVDSLNVAAASAVAFWELR 266


>gi|56964446|ref|YP_176177.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
 gi|56910689|dbj|BAD65216.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
          Length = 246

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 36/280 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+E+I + K  H  K R                    Q     + G H V  A
Sbjct: 1   MKRIESVKNERIKAWKKLHSKKGR-------------------DQTGRFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALET 118
             +   K+  +L T          A+    FP +   V    + ++  +    QG+    
Sbjct: 42  WKSDW-KVETVLTT----------ADDASLFPGECIGVSEAVMKEL-SETKSPQGIVAVC 89

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                 T + ++     ++LD V DP N+G I+R+A+A    G++     +   +A + +
Sbjct: 90  QKKQWHTPERLKGR--FVLLDRVQDPGNVGTIIRTALAADAAGVVLGSGCADLFNAKVIR 147

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  GAL H+P   + +L   ++ +   G    G S     P +Q    ++ AL+LG EG+
Sbjct: 148 ATQGALFHLPV-YMGDLVTWIEALKESGIPVYGTSLQDATPHDQFHSQEQFALLLGNEGE 206

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G++    + AT    +      ++LNVS AA + L+  ++
Sbjct: 207 GVQSHLLDAATENLFIRQNRKAESLNVSVAAGILLFALKS 246


>gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 254

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 11/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+RL    
Sbjct: 8   NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  +       +       Q + +     ++ +     +    ++LD + DP 
Sbjct: 66  LAYDEGKLIKISQSVASHLSST-KNSQDIFMTVK--INQSEHFFFSYGKWVLLDDLADPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+ ++L DA+  + + 
Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                    D + K L       ++ALI+G E  G+ P+    A    ++ + G  ++LN
Sbjct: 182 DIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRAESLN 241

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 242 AAVAAGIMIY----HFS 254


>gi|325978970|ref|YP_004288686.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178898|emb|CBZ48942.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 246

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 12/233 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A      +   +   +      D+   + H   V  V P+ + ++
Sbjct: 24  RDHSYLIEGWHLFEEA-EKAGAEFLNIFVLE------DYADRVSHFSMVTYVTPEVLKEL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A    P  D    +   ++L+ V DP N+G ++R+A A   DG++ 
Sbjct: 77  TDS-KTPQGIIAELAMPSLPLADL--KAGRYLILEDVQDPGNVGTMIRTADAAGLDGVLI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  H+P  R +++ +A QK+ +     I  + S      +  
Sbjct: 134 SEKSADIYNQKTLRSMQGSHFHLPIWR-TDVYEACQKLQNLDVPLIATTLSKESVDYKTV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             N   AL++G EG G+     + A  +AH+ MPG  ++LNV+ A  + L+  
Sbjct: 193 EHNGDFALVMGNEGNGISELMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 245


>gi|218283694|ref|ZP_03489655.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
 gi|218215683|gb|EEC89221.1| hypothetical protein EUBIFOR_02249 [Eubacterium biforme DSM 3989]
          Length = 147

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 76/144 (52%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +D + DPHN+GAILR+      DG+I TK  S   +  + K+++GA   +P   ++NL+ 
Sbjct: 1   MDGIQDPHNVGAILRTCDCAGVDGVILTKHNSCGLTPTVVKASTGAAYTVPVSIVTNLSQ 60

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L+ +   G+  +G      +   + + +    L++G+EG+G+    ++    M +L M 
Sbjct: 61  TLRNLKQEGYWVVGTDMKDAREYREGMYDSPTVLVIGSEGQGISNLVKKQCDYMVYLPMV 120

Query: 258 GIIKALNVSNAAAVALYITQNHFA 281
           G I +LN S AAA+ +Y   N   
Sbjct: 121 GSITSLNASVAAAILMYEVYNQRN 144


>gi|332367397|gb|EGJ45130.1| SpoU rRNA methylase [Streptococcus sanguinis SK1059]
          Length = 269

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+++ +  I          A  ++   L     V  V P+ +  +
Sbjct: 47  RKDSYLIEGWHLFEEAVSSGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 99

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 100 ADS-KTPQGIVAEVAFEREKIPAELSGHYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 156

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           +   +   +    +S  G+  H+P  R+ +  D ++   S     +  +  S      + 
Sbjct: 157 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSRLPILASTLSSTSIDYREV 215

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  AL++G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++
Sbjct: 216 DSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 266


>gi|329116746|ref|ZP_08245463.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
           2020]
 gi|326907151|gb|EGE54065.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
           2020]
          Length = 247

 Score =  204 bits (521), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A     ++   +   ++   +L           V  V  + + ++
Sbjct: 25  RKGSYLIEGWHLFDEA-QKAHQEFVHIFLQEDMADKLRSLEG------VILVTNEVLKEL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E        L+ ++   LL  L+ V DP N+G ++R+A A    G+  
Sbjct: 78  TDS-PNPQGIIAEIKMPSPTVLEDMQGKYLL--LEDVQDPGNLGTLIRTADAAGFTGVFL 134

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQE 223
           + + +   +    +S  G+  H+P  R  N+    Q+    G   I    SD     +  
Sbjct: 135 SDKSADLYNPKTLRSMQGSHFHLPVWR-DNVLQFCQQAKEVGVPVIASTLSDQSVDYQSI 193

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +   L++G EG G+  +  E A ++ H+ MPG  ++LNV+ AA + ++
Sbjct: 194 ETPESFILVMGNEGAGISSQMTEIADTLVHITMPGQAESLNVAVAAGILIF 244


>gi|227519879|ref|ZP_03949928.1| RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227072673|gb|EEI10636.1| RNA methyltransferase [Enterococcus faecalis TX0104]
          Length = 258

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 113/280 (40%), Gaps = 24/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  K+ ++   K  H  K R                    +     + G H V  A
Sbjct: 1   MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +  +    QG+      
Sbjct: 42  VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +    ++      ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 99  LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++   LT+ +Q     G    G    ++     ++   +  ALILG EG G
Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + P+     T   ++ M G  ++LNV+ AA V ++  QN+
Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFQNN 257


>gi|256617041|ref|ZP_05473887.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
 gi|307277164|ref|ZP_07558268.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2134]
 gi|256596568|gb|EEU15744.1| rRNA methylase [Enterococcus faecalis ATCC 4200]
 gi|295113457|emb|CBL32094.1| rRNA methylases [Enterococcus sp. 7L76]
 gi|306506094|gb|EFM75260.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2134]
          Length = 258

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 5/238 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +     + G H V  A+   +   + L   +       W A       +  V  + ++
Sbjct: 24  REELNQYIIEGFHLVEEAVKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLN 82

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +  +    QG+      L +    ++      ++LD++ DP N+G ++R+A A    G+
Sbjct: 83  SL-SELPTSQGILAIVT-LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGV 140

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE 221
           I  K  +   +  + +S  G+  H+P ++   LT+ +Q     G    G    ++     
Sbjct: 141 ILGKGTADIYNTKVLRSMQGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYY 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++   +  ALILG EG G+ P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 200 EQEAVENYALILGNEGSGVSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|283783774|ref|YP_003374528.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           409-05]
 gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
           409-05]
          Length = 331

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 29/300 (9%)

Query: 5   SKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           + K  ++++     +  A ++R   D  ++ +  +  +  S  + L + G +    AL  
Sbjct: 25  TPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGSDSDELVI-GRNAALEALRV 82

Query: 64  --PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             PS +++       +   R            +       +D+I      HQG+ ++  P
Sbjct: 83  GVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIIVKVQP 141

Query: 121 LLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L  +                         L + LD V DP N+GA++RSA AF  
Sbjct: 142 YQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFGA 201

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL     K 
Sbjct: 202 NGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKL 261

Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + E   + D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY   N
Sbjct: 262 VGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVAN 321


>gi|182684908|ref|YP_001836655.1| spoU rRNA methylase family protein [Streptococcus pneumoniae
           CGSP14]
 gi|182630242|gb|ACB91190.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           CGSP14]
          Length = 252

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 46  VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 156 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ A  + ++
Sbjct: 215 ISPLMAESADQLVHISMKGQAESLNVAVATGILIF 249


>gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
           DSM 574]
          Length = 264

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 104/259 (40%), Gaps = 6/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLD 82
            +   K ++   Q++    +   L + GV  V  AL +  R    ++   A +N      
Sbjct: 7   QNPKIKYIRRLAQRN-FREKERKLVVEGVRLVEEALQSGWRTESFVYTYEAVQNERGSRL 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
            +           V    + ++   E   QG+            D +     L++V+D V
Sbjct: 66  LELAQRKCAQTYQVTAHIMSQLSDTE-TPQGVLAVLWQPDYVLADVLPGQPPLVVVVDGV 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+RSA A    G++  K      +    ++  G+L H+P ++  ++  AL  
Sbjct: 125 QDPGNLGTIVRSADAAGASGVLLLKGTVDIYNPKTIRATMGSLFHLPVVKAEDVDGALAY 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + S G   I       +P+ +      +A+++G EG G R           ++ MPG  +
Sbjct: 185 LASAGVTLIVGDPVLGEPIFKANLKVPVAIMVGNEGAGPRADLDRFKHVKVNIPMPGRAE 244

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A ++ LY      
Sbjct: 245 SLNVAMATSIMLYEAVRQR 263


>gi|325695046|gb|EGD36949.1| SpoU rRNA methylase [Streptococcus sanguinis SK150]
          Length = 246

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 99/234 (42%), Gaps = 12/234 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+++ +  I          A  ++   L     V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAVSSGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFEREEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           ++  +   +    +S  G+  H+P  RI +  D ++   S     +  +  S      + 
Sbjct: 134 SRLSADIYNLKTLRSMQGSHFHLPVYRI-DTADFIRLAQSSSLPILASTLSSTSIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +  AL++G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++  +
Sbjct: 193 DSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIFHLR 246


>gi|18310871|ref|NP_562805.1| RNA methyltransferase, TrmH family [Clostridium perfringens str.
           13]
 gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
           ATCC 3626]
 gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
           str. F4969]
 gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13]
 gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
           str. F4969]
          Length = 257

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 8/239 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100
           H  +     + G+  V  A+ +    I  ++ T++   +  D    +     +  +    
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEAL 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + ++   E   QG+              +++ +L++++D V DP N+G I+R+A A    
Sbjct: 82  LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAA 136

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+ TK      +    +S  G++ +IP +   +L D ++ +   G++ +  S   K   
Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNF 195

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +E    K+ + +G EG G+  +  + A     + MPG  ++LNV+ A ++ +Y     
Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254


>gi|168489978|ref|ZP_02714177.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
 gi|183571629|gb|EDT92157.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae SP195]
          Length = 246

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 109/277 (39%), Gaps = 33/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245


>gi|303257674|ref|ZP_07343686.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
           bacterium 1_1_47]
 gi|331000773|ref|ZP_08324422.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859644|gb|EFL82723.1| RNA methyltransferase, TrmH family, group 3 [Burkholderiales
           bacterium 1_1_47]
 gi|329570505|gb|EGG52230.1| RNA methyltransferase, TrmH family, group 3 [Parasutterella
           excrementihominis YIT 11859]
          Length = 247

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 9/244 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKTVPPQTI 101
           + E+  L G H VS+ +   S  I  +      ++   R   +        +       +
Sbjct: 2   KKEDTVLAGFHAVSSRMKRDSSSIRIVYYDPKRRDQRMRRMIEEIEKAGIRLMQADNNRL 61

Query: 102 DKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           D     E  HQGL    AP+         +D +  + LL++LD V DP N GA LR A A
Sbjct: 62  DG-FSHEVPHQGLIALAAPIDIGMSFDTLMDNLAGNPLLLLLDGVTDPRNFGACLRVADA 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                +IT K  S + +A   K+++GA E +P +R++NL  ++ ++   G   IG + ++
Sbjct: 121 AGVSAVITPKDRSATLTAAAVKASAGASETVPIVRVTNLAGSIVELVDAGVPIIGTAGEA 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +K + +  +      +LGAEG GLR  T+   + +A + M G +++LNVS AA + L+ T
Sbjct: 181 QKTIYEFDQKGAFGWVLGAEGDGLRQLTRRRCSDLAKIPMLGTVESLNVSVAAGICLFET 240

Query: 277 QNHF 280
               
Sbjct: 241 VRQR 244


>gi|257057351|ref|YP_003135183.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256587223|gb|ACU98356.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 267

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 111/254 (43%), Gaps = 7/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   G   V   L++P   +  LL     +A L  D    
Sbjct: 17  DFRDLTTADRRPDRPGGRGLVIAEGTVVVRRLLDSPY-PVRALLGVPKRIAELADDLATV 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147
           +  P      Q +  +VG     +G+         PT D V  N+++L VL+ VND  N+
Sbjct: 76  NA-PAYVTSAQIMSDVVGFHLN-RGVLAVADRAPKPTFDEVVANARVLAVLEGVNDHENL 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+ R+A AF  DG++     +        + + G +  +P+        AL ++  +GF
Sbjct: 134 GAMFRNAAAFGVDGVLLGASCADPLYRRSVRVSMGHVLRVPFTTAERWPCALDELRRYGF 193

Query: 208 QTIGLSSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               L+  S+    +   E   ++IAL+ G+EG GL     + A S   + M   + +LN
Sbjct: 194 HLAALTPRSEAVTLRNVHEAGYERIALLFGSEGHGLSQAALDAADSWVRIPMASGVDSLN 253

Query: 265 VSNAAAVALYITQN 278
           V+ AAAVA Y    
Sbjct: 254 VATAAAVAFYELTR 267


>gi|326329912|ref|ZP_08196227.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
 gi|325952303|gb|EGD44328.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
          Length = 267

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY+ ++    +    S        G   V  A+         L+A K      D   +  
Sbjct: 17  DYRDLRDVELRKSLESSEGLFLAEGEKVVRRAVTGGFEPRSFLMAPKWLDGLADVLES-- 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNI 147
              P   +  +  +++ G   VH+G          P++++ +  ++ ++VL+ + D  N+
Sbjct: 75  TDAPCYVMSEKAAEEVTGFH-VHRGALASLKRRPLPSVESVLEGARSVLVLEDIVDHTNV 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RS  A   D ++   R +        K A GA+  +P+ R+ +  +AL  + + GF
Sbjct: 134 GAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFALPWTRLLDWYEALPSLSAAGF 193

Query: 208 QTIGLSS-DSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            T+ L+  D    +E+ ++  DK+AL+LG+EG GL P+ Q+ A   A + M   I +LNV
Sbjct: 194 TTVALTLADDAVDIEKAVEGVDKVALVLGSEGHGLSPRWQQAADRRAIIPMSAGIDSLNV 253

Query: 266 SNAAAVALYITQNH 279
           + A AVA Y+T   
Sbjct: 254 AAATAVACYVTARR 267


>gi|296111277|ref|YP_003621659.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
 gi|295832809|gb|ADG40690.1| rRNA methylase [Leuconostoc kimchii IMSNU 11154]
          Length = 257

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 119/266 (44%), Gaps = 17/266 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S ++S         + +KK+ +  +K R  ++     L G H V  A+   + K  
Sbjct: 2   DRILSNQNSRV-------KAWKKLAT--KKGRQENR--TYLLDGWHLVEEAIKASA-KFH 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            ++AT+  +A      ++PH  P   +  +    I G     QG+  E +          
Sbjct: 50  AVMATEEQMA--THLPDVPHGVPAFEISDEVAKHIAGTN-TPQGIFAEISLPDKTFDPTY 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +    ++LD++ DP N+G ++R+A A    G++  +  + + S  + ++  G+  H+  
Sbjct: 107 VHDGAWLLLDNIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAMQGSQFHLEV 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   +L +    + +      G    +S +       + + ALI+G EG+G+  +  E  
Sbjct: 167 LN-GDLNEWADALTANNLSVYGSQLNESAQSYRAIEPSTQFALIVGNEGQGMSNELAEKT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T+  ++ + G  ++LNV+ A  + ++
Sbjct: 226 TTNLYIPIQGQAESLNVAIAGGILMF 251


>gi|167619604|ref|ZP_02388235.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis Bt4]
 gi|257138775|ref|ZP_05587037.1| RNA methyltransferase [Burkholderia thailandensis E264]
          Length = 262

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 107/261 (40%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +     L G+H  SA L+   +    +  T  AL+
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALS 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A       + V N+   +VL
Sbjct: 61  HAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPAPALPERVSNTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++           S   + +        +A + G EG G+  + ++ AT    +  PG
Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1]
 gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1]
          Length = 267

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 111/276 (40%), Gaps = 17/276 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S ++          +  KK+   N + +         + G+  V  AL++  +    L
Sbjct: 2   ITSSQNLRV-------KLVKKLAQRNFRQKERKLA----VEGIRFVEEALSSTWQTEILL 50

Query: 72  L---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
               A +    ++  D        V  V    + ++   E   QG+            D 
Sbjct: 51  YTDQACQAQRGKILLDLARDKGVEVLAVSDAIMKELSDTE-TPQGMLAVLRQPDYTLEDI 109

Query: 129 VR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +R     L++++D V DP N+G I+RSA A    G+I  K      +    ++  G+L H
Sbjct: 110 IRPDQKPLVVIVDGVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKTLRATMGSLFH 169

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P I++S++ +AL+ + S G   +        P+ +      + +I+  EG G R +   
Sbjct: 170 LPVIQVSDVNEALEYLASIGVTLLVGEPAGGIPVFKANLQTPVGIIVANEGAGPREEIFR 229

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  + MPG  ++LNV+ A ++ LY       K
Sbjct: 230 YNHQKITIPMPGCAESLNVAIATSIILYEAIRQRHK 265


>gi|325696356|gb|EGD38247.1| SpoU rRNA methylase [Streptococcus sanguinis SK160]
          Length = 246

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+ +   ++ ++ A        ++   L     V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAV-SSGEELIRIFAL------AEYAERLADFSQVIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFEREEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           +   +   +    +S  G+  H+P  RI +  D ++   S     +  +  S      + 
Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRI-DTADFIRLAQSSRLPILASTLSSTSIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  AL++G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 DSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 243


>gi|154500722|ref|ZP_02038760.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
           29799]
 gi|150270611|gb|EDM97920.1| hypothetical protein BACCAP_04400 [Bacteroides capillosus ATCC
           29799]
          Length = 284

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 8/258 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + ++     ++R   +           ++ AL    + +  L+  K+   +         
Sbjct: 26  FTRLTEAQLRNRLEPEKGIFIAESPKVIARALEAGYQPLSLLMERKHLEGQGREIMERCG 85

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G +     L     P+L    +    ++ + VL+ + D  N+GA
Sbjct: 86  DIPVYTGDNDLLAALTGYQVNRGILCAMRRPVLPTVEELCAGARRVAVLEGIVDSTNVGA 145

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204
           I RSA A   D ++ T            + + G +  IP+ RI           L ++++
Sbjct: 146 IFRSAAALHMDAVLVTPTCCDPLYRRAVRVSMGTVFQIPWTRIGDSPADWPEKGLSRLNA 205

Query: 205 WGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF+T  ++ SD+   ++       DK+A++LG EG GL   T         + M   + 
Sbjct: 206 LGFKTAAMALSDNSVSIDDPALMAEDKLAIVLGTEGDGLSHTTIAHCDYTVRIPMSHGVD 265

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A+AVA +  +  
Sbjct: 266 SLNVAAASAVAFWQLRTR 283


>gi|169833146|ref|YP_001695327.1| rRNA/tRNA methylase [Streptococcus pneumoniae Hungary19A-6]
 gi|168995648|gb|ACA36260.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 246

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|309804548|ref|ZP_07698613.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808492|ref|ZP_07702391.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 01V1-a]
 gi|308165940|gb|EFO68158.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168320|gb|EFO70439.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
           [Lactobacillus iners LactinV 01V1-a]
          Length = 180

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 7/169 (4%)

Query: 116 LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +   P     L+ +      +    L++LD + DPHN+G+ILR+A A   DGII  +R +
Sbjct: 1   MAITPFEYTDLNDLLKSIEEKADPFLLMLDSIEDPHNLGSILRTADATGVDGIIIPQRRA 60

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              ++V+AK+++GA++++P +R++NL   +  +   G+   G +              K 
Sbjct: 61  SGLTSVVAKTSTGAIDYVPVVRVNNLVQTVDTLKDKGYWFFGTAMSGDN-YTNWDARGKC 119

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L++G EGKG+ P   +       + M G +++LN   A  + LY   N
Sbjct: 120 VLVIGNEGKGISPLLLKQMDQTLTIPMTGHVQSLNAGVATGILLYQMFN 168


>gi|320162456|ref|YP_004175681.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319996310|dbj|BAJ65081.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 250

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 17/241 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKI 104
            ++ G + V   L    R+ F+LL       +   +  L        PV  VP   +D +
Sbjct: 3   EWICGRNAVYETLRARRRQFFRLLIASGVEEKGRIEEILALCAARRVPVSRVPRPQLDSL 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMV-LDHVNDPHNIGAILRSAVAF 157
                 HQG+ALE +      L  +      R   LL + LD + +P N+G +LRSA A 
Sbjct: 63  S---ESHQGVALECSGYPYAGLHDILALARQRGEPLLALGLDLIQNPQNLGTLLRSAEAV 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSD- 215
              G++     +   +  + +++SGA EH+   + +NL  AL+          +GL    
Sbjct: 120 GAHGVVIPLARAAGITPAVVQASSGASEHLLVAQ-ANLAQALETFKEEADAWVVGLEGSP 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +P ++   +  + L++G EG+G+RP  +     +  L M G I++LN + A ++ LY 
Sbjct: 179 ESEPYDRVRLDGALVLVVGNEGEGMRPLVRRHCDVLVSLPMRGKIESLNAAVAGSIMLYK 238

Query: 276 T 276
            
Sbjct: 239 A 239


>gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
 gi|156865178|gb|EDO58609.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
          Length = 268

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 95/265 (35%), Gaps = 15/265 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----L 81
           ++   K +   N+ +    + +   + G+         P  ++ Q+  ++ A  R    L
Sbjct: 8   SNPKIKNINKLNKNASFRKEEQVFIVEGIRMFREL---PVDRVKQVFVSETAYQRYGTEL 64

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLL 135
                      +  V       +  +    QGL            D +       N    
Sbjct: 65  PEKGITEQDRRLVVVSDSVFRSM-SQTKTPQGLLAVVERYHYTMEDLISVMDKRENGNTF 123

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL+ + DP N+G I+R+A A    GII         +  + +S  G +  +P++ + + 
Sbjct: 124 LVLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDIYNPKVVRSTMGTIFRVPFVYVDDP 183

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             A+ ++   G    G   D    L         A ++G EG GL  +    A  +  + 
Sbjct: 184 AKAVDRLKEHGIVVYGAHLDG-CDLYAGKLKRNNAFLIGNEGNGLTDELSSKADRLLRIP 242

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G +++LN + +A +  Y      
Sbjct: 243 MAGQVESLNAAISATLLAYEAYRQR 267


>gi|225011636|ref|ZP_03702074.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-2A]
 gi|225004139|gb|EEG42111.1| RNA methyltransferase, TrmH family, group 3 [Flavobacteria
           bacterium MS024-2A]
          Length = 244

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 11/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E + ++G+  +  A+ +     +++ L  T++ L                 VP + +D+
Sbjct: 2   EETVTIFGIRAILEAIESGKSLDRVWLLKGTQSKLFEQLLHVLRNKNIAFSFVPVERLDR 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
              K   HQG       L +  ++ +       + + + ++LD V D  N GAILRSA A
Sbjct: 62  FSSK--NHQGAVARIGALSTQDMEPLIESVLKEKENPVFVLLDGVTDTRNFGAILRSAAA 119

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +  +   S   +  + K+++G    +P  ++ +L D +  + +    T+G++  S
Sbjct: 120 TGVDAVFISSTGSAPLNGDVVKTSAGGAFKVPISKVQHLKDVVYYLKAHDIPTLGITEKS 179

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + L        +AL+ GAE  G+     +     A L M   + +LNVS A AV  Y T
Sbjct: 180 TETLYDSDLKGPLALVFGAEDVGISNGLLKILDHKAKLPMTEAVDSLNVSVACAVVFYET 239

Query: 277 QNHF 280
               
Sbjct: 240 IRQR 243


>gi|168206060|ref|ZP_02632065.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
           JGS1987]
 gi|169343638|ref|ZP_02864637.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
           JGS1495]
 gi|169298198|gb|EDS80288.1| RNA methyltransferase, TrmH family [Clostridium perfringens C str.
           JGS1495]
 gi|170662406|gb|EDT15089.1| RNA methyltransferase, TrmH family [Clostridium perfringens E str.
           JGS1987]
          Length = 257

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 8/239 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100
           H  +     + G+  V  A+ +    I  ++ T++   +  D    +     +  +    
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEAL 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + ++   E   QG+              +++ +L++++D V DP N+G I+RSA A    
Sbjct: 82  LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRSAHAAGAA 136

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+ TK      +    +S  G++ +IP +   +L D ++ +   G++ +  S   K   
Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNF 195

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +E    K+ + +G EG G+  +  + A     + MPG  ++LNV+ A ++ +Y     
Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254


>gi|332665335|ref|YP_004448123.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334149|gb|AEE51250.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 268

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 6/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARLDW 83
            +   K +    +K+R   +       G+  V  AL      + QLL        A L  
Sbjct: 11  QNPLIKNIGILLEKARERRKQGLFVAEGLIEVGMALRAGYE-VEQLLYDPEITSFAALQS 69

Query: 84  DANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              LP   P K   V    ++KI  +  V   +A+   P  +    +   + L++VL+ V
Sbjct: 70  LPKLPANLPQKLIEVSGSVMEKIAYRANVPNVVAVLKTPERALNNFSPGKNPLILVLETV 129

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P N+GAILR+A A     +      +   +  + +++ GA+  +P   ++   DAL  
Sbjct: 130 EKPGNLGAILRTADAAGVHAVFLCDPQTDWYNPNVIRASLGAVFTVPVFTVA-AADALNW 188

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +       +    ++  P      +  IA ++G E  G+     E A     + M G + 
Sbjct: 189 LQMHKIAILATHLEASYPYFDCDLSGAIAFVMGTEANGISNFWVEAAQQRVIIPMHGQVD 248

Query: 262 ALNVSNAAAVALYITQNHF 280
           ++NVS + A+ L+      
Sbjct: 249 SMNVSVSTAILLFEALRQR 267


>gi|148989973|ref|ZP_01821248.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147924633|gb|EDK75719.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP6-BS73]
          Length = 246

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQTDLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 261

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 101/260 (38%), Gaps = 9/260 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           ++  K++ +  +KS    +     + G+            +I  +  +++  A       
Sbjct: 7   NKKIKELMALIKKSSARKKQNAYIIEGIRMFREL---KKDEILDVFVSESFDALNKKL-- 61

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVN 142
           +   +P   V    I + V      QG+ +          + +         L++LD + 
Sbjct: 62  ISEIYPGYEVVSDKIFESVSDTKTPQGVMVVVKRKEYTLENILTVRGEFPHNLLILDSLQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R+       GII  +      +  + +S  G++  +P+I + +L D ++++
Sbjct: 122 DPGNLGTLVRAGEGAGITGIIMNESTVDIYNPKVIRSTMGSVFRVPFIYVKDLKDIIEEL 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           ++        S +     +       IA I+G E  G+     +   +   + M G +++
Sbjct: 182 YARKIDIYASSLEGATEYDAPDYRGSIAFIIGNEAAGISKDVLDAVKNKVKIPMLGEVES 241

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN + A ++ +Y       K
Sbjct: 242 LNAAVAGSILMYEAARQRRK 261


>gi|307707580|ref|ZP_07644061.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
 gi|307616293|gb|EFN95485.1| possible rRNA/tRNA methylase [Streptococcus mitis NCTC 12261]
          Length = 246

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 108/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L   A          V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALESYREQL---AAFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADFSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+S+    L++    G   +  +        +E+   +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMSSQA-LLKETKEAGISVLATTLSKDSVDYRELPPIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISSLMAESADQLVHISMKGKAESLNVAVAAGILIF 243


>gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 254

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 11/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+RL    
Sbjct: 8   NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  +       +       Q + +     ++ +     +    ++LD + DP 
Sbjct: 66  LAYDESKLIKISQSVASHLSST-KNSQDIFMTVK--INQSEHFAFSYGKWVLLDDLADPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+ ++L DA+  + + 
Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                    D + K L       ++ALI+G E  G+ P+    A    ++ + G  ++LN
Sbjct: 182 DIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRAESLN 241

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 242 AAVAAGIMIY----HFS 254


>gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis
           carolinensis]
          Length = 382

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 136/317 (42%), Gaps = 55/317 (17%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHR---------DYKKMQ--SFNQKSRHTSQ--------PE 47
           K+S  +   K +   K  R  R         D + ++   F +K R  +Q          
Sbjct: 62  KESSDLSKPKGTLLKKFWRQFRAQALPPGTTDLQGLRNDDFPRKKRVRAQVVLPVERSDG 121

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  L+G+   S AL    R   +L        T  A +R   D       PV+TVP + +
Sbjct: 122 SEMLFGIAPCSLALATSKRSFSRLFLKAGVTPTTEAFSRQAED----RKIPVQTVPRKVL 177

Query: 102 DKIVGKEAVHQGLALETAPL--------LSPTLDAVRNSQ----LLMVLDHVNDPHNIGA 149
           D++     VHQG+ LE  PL         +  L+     +    L + L+ + DP N+GA
Sbjct: 178 DRL-SHGGVHQGVCLEATPLHPTGWTQAPAHRLEGATTEEAPQLLWLALEGIQDPMNLGA 236

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +LRSA     DGI+ +++ S   + V++K++SGA+E +      +L   L+     G++ 
Sbjct: 237 VLRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLDVFSADDLPGFLKVKSKEGWEV 296

Query: 210 IGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---- 258
           +G  + +K                    L+LG EG GL P+T+     M  +  PG    
Sbjct: 297 LGTVAHAKAQDGIPVVSCLDFRWMKPTILVLGNEGHGLSPETKSLCRRMLTIA-PGRELE 355

Query: 259 -IIKALNVSNAAAVALY 274
             I++LNVS AA + L+
Sbjct: 356 PGIESLNVSVAAGILLH 372


>gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
           JGS1721]
 gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
           JGS1721]
          Length = 257

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 105/239 (43%), Gaps = 8/239 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100
           H  +     + G+  V  A+ +    I  ++ T++   +  +    +     +  +    
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPELFLKINENIKLIQMNEAL 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + ++   E   QG+              +++ +L++++D V DP N+G I+R+A A    
Sbjct: 82  LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAA 136

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+ TK      +    +S  G++ +IP +   +L D ++ +   G++ +  S   K   
Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNF 195

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +E    K+ + +G EG G+  +  + A     + MPG  ++LNV+ A ++ +Y     
Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254


>gi|327462015|gb|EGF08344.1| SpoU rRNA methylase [Streptococcus sanguinis SK1057]
          Length = 246

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+ +   ++ ++ A      RL   +       V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAV-SSGEELIRIFALAEYAERLGDFSQ------VIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFEREAIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           +   +   +    +S  G+  H+P  R+ +  D ++   S     +  +  S      + 
Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSHLPILASTLSSTSIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  AL++G EG+G+ P+  E A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 NSRESFALVMGNEGQGISPEMTEAADILVHISMKGQAESLNVAVAAGILIF 243


>gi|225377115|ref|ZP_03754336.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
           16841]
 gi|225211020|gb|EEG93374.1| hypothetical protein ROSEINA2194_02760 [Roseburia inulinivorans DSM
           16841]
          Length = 286

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +   P          +  AL      I  L+  K+   R           PV T     +
Sbjct: 42  YEPAPGIFIAESPKVIERALETGCEPISLLMEQKDFDTRGKNIIAKCKSIPVYTAKLGVL 101

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           ++I G +     L     P +       +N++ + VL++V +P N+GAI RSA A + D 
Sbjct: 102 EQITGYKLARGMLCAMHRPAMPSAEKVCKNARRIAVLENVVNPTNVGAIFRSAAALNMDA 161

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISN-----LTDALQKMHSWGFQTIGLSS-- 214
           ++ T   S        + + G +  +P+  I N         +  +H +GF+T+ ++   
Sbjct: 162 VLLTSACSDPLYRRAIRVSMGTVFQVPWTYIENKNVSWPQGGMDLLHEYGFKTVAMALRN 221

Query: 215 DSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           DS +  ++++   +K+A+ILG EG GL  +T         + M   + +LNV+ A+AVA 
Sbjct: 222 DSVRIDDEKLHAEEKLAIILGTEGDGLAAETMADCDYTVKIPMSHGVDSLNVAAASAVAF 281

Query: 274 YI 275
           + 
Sbjct: 282 WE 283


>gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773]
          Length = 257

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 118/266 (44%), Gaps = 17/266 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S ++S         + + K+ +     +   + +   L G H V  A+   + K  
Sbjct: 2   DRILSNQNSRV-------KAWAKLAT----KKGRLENKTYLLDGWHLVEEAIKAKA-KFH 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            ++AT+  +A  +   ++PH  P   +  +    I G     QG+  E +        + 
Sbjct: 50  AVMATEAQMA--EHLPDVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEISLPDKTFDPSY 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +    ++LD + DP N+G ++R+A A    G++  +  + + S  + ++  G+  H+  
Sbjct: 107 VHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGEGTADAYSPKVVRAMQGSQFHLEV 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   +L +    + + G    G   D + +   Q   + + ALI+G EG+G+  +     
Sbjct: 167 LN-GDLNEWTDALTANGLPVYGSQLDEAAQSYRQIEPSTQFALIVGNEGQGMSEELAAKT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T+  ++ + G  ++LNV+ A  + ++
Sbjct: 226 TANLYIPIQGQAESLNVAIAGGILMF 251


>gi|167581493|ref|ZP_02374367.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis TXDOH]
          Length = 262

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 108/261 (41%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +     L G+H  SA L+   +    +  T  AL+
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALS 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A   S   + V ++   +VL
Sbjct: 61  HAEARETVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVARPASALPERVSDTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++           S   + +        +A + G EG G+  + ++ AT    +  PG
Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLTGPVAWVFGNEGAGVSVRWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|169627980|ref|YP_001701629.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
           19977]
 gi|169239947|emb|CAM60975.1| Hypothetical tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 270

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
            ++ + S +++    S    +   GV  V   L +  R +  LL T   L+ L  D   P
Sbjct: 16  SFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPL-ALLGTDRRLSELAADLE-P 73

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + ++VG       LA    P   P  D ++ ++ + VL+ VND  N+G
Sbjct: 74  VDVPYYRASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAVLEGVNDHENLG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D ++     +        + + G    +P+ R+     +L ++   GF+
Sbjct: 134 SIFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEWPKSLYRLRDSGFR 193

Query: 209 TIGLSSDS-KKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++     K L   I     +K+AL++GAEG GL       +     + M     +LN
Sbjct: 194 LLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLRVRIPMANGTDSLN 253

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 254 VATAAALAFYERAR 267


>gi|262282150|ref|ZP_06059919.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
 gi|262262604|gb|EEY81301.1| spoU rRNA methylase [Streptococcus sp. 2_1_36FAA]
          Length = 246

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 12/233 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    AL++ +  +  + A      RL           V  + P  +  +
Sbjct: 24  RTDSYLIEGWHLFEEALSSGAE-VISIFALPEYADRLSGCEQ------VNWLSPDLLRDL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E         + +    L   L+ V DP N+G I+R+A A   DGI  
Sbjct: 77  ADS-KTPQGIVAEVRLQQEVLPEKLSGKYLF--LEDVQDPGNLGTIIRTADAAGFDGIFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           ++  +   +    +S  G+  H+P  R++   + +          +  +        Q++
Sbjct: 134 SEHSADLYNLKTLRSMQGSHFHLPIYRLA-TANLIDLAKKSDLPILASTLSDDSIDYQKL 192

Query: 225 KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K  K   L++G EG+G+    +  A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 193 KGSKNFILVMGNEGQGISSMIEAAADQLVHIPMKGKAESLNVAVAAGILIFYL 245


>gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC
           13124]
          Length = 257

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 8/239 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100
           H  +     + G+  V  A+ +    I  ++ T++   +  D    +     +  +    
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNETL 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + ++   E   QG+              +++ +L++++D V DP N+G I+R+A A    
Sbjct: 82  LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAA 136

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+ TK      +    +S  G++ +IP +   N  D ++ +   G++ +  S   K   
Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVE-DNSLDFVKSLKKEGYKLVVSSLQGKNNF 195

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +E    K+ + +G EG G+  +  + A     + MPG  ++LNV+ A ++ +Y     
Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDEVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254


>gi|225859729|ref|YP_002741239.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
 gi|225720207|gb|ACO16061.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 70585]
 gi|301794916|emb|CBW37377.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|332072159|gb|EGI82645.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41301]
          Length = 246

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 109/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|256372653|ref|YP_003110477.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009237|gb|ACU54804.1| RNA methyltransferase, TrmH family, group 3 [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 251

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           + G   V        R++ +++           +A      PV+ +PP+  +++   E V
Sbjct: 19  VEGRRAVLECFRAGRRRVRRVIVEAGREPEAIIEAAARAGVPVELLPPERFERVARTE-V 77

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           HQG+  +  P++   LD + +  LL+V+DH+ DPHN+GA+LRSA AF  DG++  +  S 
Sbjct: 78  HQGVLADCDPVVDVGLDGLADGSLLVVVDHLEDPHNLGAVLRSAAAFGADGVVLPRYRSV 137

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDKI 229
             +  + K A+G +E + +  +S++  AL+++ + G  ++GL +D+   +    +  +++
Sbjct: 138 PLTPTVTKVAAGGVEWLRFALVSSIPAALRRLRARGVWSVGLDADAATSVFSLTLATERL 197

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL++GAEG+GL P  +      A + +   + +LN S AA++AL
Sbjct: 198 ALVVGAEGRGLAPLVRRGVDVTAAIPLAATVASLNASVAASIAL 241


>gi|327490084|gb|EGF21872.1| SpoU rRNA methylase [Streptococcus sanguinis SK1058]
          Length = 246

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+ +   ++ ++ A        ++   L     V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAV-SSGEELIRIFAL------AEYAERLADFSQVIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L++V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFERKEIPSELSGRYLF--LENVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           +   +   +    +S  G+  H+P  R+ +  D ++   S     +  +  S      + 
Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLARSSSLPILASTLSSTSIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +   L++G EG+G+ P+  E A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 VNKESFVLVMGNEGQGISPEMTEAADLLVHISMKGQAESLNVAVAAGILIF 243


>gi|325690945|gb|EGD32945.1| SpoU rRNA methylase [Streptococcus sanguinis SK115]
          Length = 246

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 102/231 (44%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+++ +  + ++ A      RL   A+         V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAVSSGAE-LIRIFALAEYAERL---ADFSQMI---FVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A       + +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFEREKIPEELSGHYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +   +   +    +S  G+  H+P  R+ +  D +    S G   +  +  S     +E+
Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIILAQSSGLPILASTLSSASIDYREV 192

Query: 225 -KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  AL++G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 GSKESFALVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 243


>gi|298207714|ref|YP_003715893.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83850351|gb|EAP88219.1| putative tRNA:rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 245

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            E+  +YG+  +  A+       K++     +  L +               VP   I+K
Sbjct: 2   TEDTKIYGLRAIIEAIEAGKDIEKVYLQKELEGDLFKELESLIKSKRISSSYVPEIKIEK 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVA 156
           +  K   HQG   + AP+     +   N       S + ++LD ++D  N GAI+R+A  
Sbjct: 62  L-SKGRNHQGAVAKVAPISFQDFEITINRIIKDIESPIFLMLDQISDTRNFGAIVRTAEC 120

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                II +K  S   +A   K+++GA+ +IP  ++ ++ DA+  + S   + +  +  +
Sbjct: 121 TGVSAIIISKTGSAPITADAVKTSAGAIFNIPICKVDHIKDAIYYLQSCDVKIVAATEKT 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +         ALI+G+EG+G+ P   +     A L + G I++LNVS A    LY  
Sbjct: 181 DNTIYDVPLTGSHALIMGSEGRGINPSVLKIVDYKAKLPLLGKIESLNVSVATGAFLYEA 240

Query: 277 QNHF 280
               
Sbjct: 241 IRQR 244


>gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 254

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 111/257 (43%), Gaps = 11/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+RL    
Sbjct: 8   NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  +               Q + +     ++ +     +    ++LD + DP 
Sbjct: 66  LAYDEGKLIKISQSVASHFSST-KNSQDIFMTVK--INQSEHFFFSYGKWVLLDDLADPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+ ++L DA+  + + 
Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                    D + K L       ++ALI+G E  G+ P+    A    ++ + G  ++LN
Sbjct: 182 DIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRAESLN 241

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 242 AAVAAGIMIY----HFS 254


>gi|306834157|ref|ZP_07467277.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304423730|gb|EFM26876.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 247

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 12/233 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A      +   +   ++   R      + H   V  V P+ + ++
Sbjct: 25  RDHSYLIEGWHLFEEA-EKAGAEFLNIFVLEDYADR------VSHFSMVTYVTPEILKEL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A + S  L+ ++     +VL+ V DP N+G ++R+A A   DG++ 
Sbjct: 78  TDS-KTPQGIIAELA-MPSLPLENLK-VGRYLVLEDVQDPGNVGTMIRTADAAGLDGVLI 134

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  H+P  R +N+ +A QK+ +     I  + S      +  
Sbjct: 135 SEKSADIYNQKTLRSMQGSHFHLPIWR-TNVYEACQKLQNLDVPLIATTLSKESVSYKTV 193

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             N   AL++G EG G+     + A  +AH+ MPG  ++LNV+ A  + L+  
Sbjct: 194 EHNGNFALVMGNEGNGISDSMTKQADILAHIIMPGQAESLNVAVATGIVLFQL 246


>gi|32490927|ref|NP_871181.1| hypothetical protein WGLp178 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166133|dbj|BAC24324.1| yjfH [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 250

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 24/252 (9%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKI 104
           N  +YG+H +   + N S KI  +L  K+      +     +      +K V  + ++KI
Sbjct: 2   NEIIYGIHVIEEFIKNKSNKILCILFLKSRKDIKFKKLILISNEKNIKIKFVDKKFLNKI 61

Query: 105 VGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                 HQG+            P L   L+  + +   ++LD + DP N+G+ +RSA  F
Sbjct: 62  T-NNKKHQGIVAYIKNSKILKEPFLLKMLEN-KKNYFFLILDGIMDPRNLGSCIRSAYIF 119

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   S+ + K ASG+L+ IP I ++NL   +  +  +  Q IG S  ++
Sbjct: 120 GVQAVIIRKNRSAKISSAVKKVASGSLDLIPLIYVTNLVRTINLLKKYNIQIIGTSRKAQ 179

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAAVA 272
             +  +     IA+++G+E  G+    +E   ++ ++      +P     LN+S A  + 
Sbjct: 180 LDICNKKLKQSIAVVMGSENLGISRLVKENCDNILNIPTVKNNLP-----LNISVATGIC 234

Query: 273 LYI--TQNHFAK 282
           ++    +N+  K
Sbjct: 235 IFEIIRKNYLNK 246


>gi|325126130|gb|ADY85460.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 254

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 110/257 (42%), Gaps = 11/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+RL    
Sbjct: 8   NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  +       +       Q + +                   ++LD + DP 
Sbjct: 66  LAYDEGKLIKISQSVASHLSST-KNSQDIFMTVKINRPKHFAFSYGK--WVLLDDLADPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+ ++L DA+  + + 
Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                    D + K L   +   ++ALI+G E  G+ P+ +  A    ++ + G  ++LN
Sbjct: 182 DIPVYASLLDPAAKQLGDFVPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRAESLN 241

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 242 AAVAAGIMIY----HFS 254


>gi|325677835|ref|ZP_08157477.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
 gi|324110389|gb|EGC04563.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
          Length = 270

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 106/265 (40%), Gaps = 10/265 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-----KIFQLLATKNAL 78
            +++   K++       ++  +     + G+     A+ +        K+  +  T+NA 
Sbjct: 5   SKDNPKIKQLAKLYVSRKYRRETGLFVIEGLRGCVDAVRDDVEHDGLLKVDGVYYTENAF 64

Query: 79  ARLDWDANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQL 134
              +    +    P      +  +  D+I   ++  QG+ +    L    + D ++    
Sbjct: 65  DSAEGFGEVLEKIPDSRRFVITREIADRISDTDSC-QGVFVTAKRLDKALSADGLKAGGK 123

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD + DP N+G ++R+A A   DG++ +       +    +SA G++  +      +
Sbjct: 124 YLVLDELQDPGNLGTMIRTADAVGLDGVVLSGNCVDLYNPKTVRSAVGSMPRVDIFVEKD 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                + +   G +T     D    ++Q       A+++G EG+GL  +  E  +    +
Sbjct: 184 FEAVTEMLGKKGIRTAAAVIDGGTEIKQFDFGGGCAVVIGNEGRGLSQEHVEMCSDRVTI 243

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I +LN + AA + L+     
Sbjct: 244 KMYGHIDSLNAATAATIFLWEMTRR 268


>gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
          Length = 208

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 9/198 (4%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHV 141
           H   +       +D++ G  + HQG+AL        T+  +  +        L++ LD V
Sbjct: 6   HGIALMQATRGELDRMTG-GSNHQGVALRLPEYEYATVGDLIAAGTQTYRGGLVVALDKV 64

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GAI+RSA AF   G++   R S S +A   K+++GA   IP    +NL  AL K
Sbjct: 65  TDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGK 124

Query: 202 MHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             + G+  +GL+ ++          +  + +++G+EG GL   T+++   +A + +   +
Sbjct: 125 FAAAGWMIVGLAGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIPISSDV 184

Query: 261 KALNVSNAAAVALYITQN 278
           ++LN S AA++ALY    
Sbjct: 185 ESLNASVAASIALYEAAR 202


>gi|326773068|ref|ZP_08232352.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
           C505]
 gi|326637700|gb|EGE38602.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces viscosus
           C505]
          Length = 332

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/290 (25%), Positives = 124/290 (42%), Gaps = 15/290 (5%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAA 60
              + +   ++   K    A+         + +   + K R     ++  L G + V+ A
Sbjct: 35  KGPTPRAENRVGHPKARAKARAESRAAQPTRAKQLEKIKRRFDVPEDHEILCGRNAVAEA 94

Query: 61  LNNPSRKIFQLL--ATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
               S  I ++    +  +  RL            PV       +D +    A HQG+A+
Sbjct: 95  -AYASVPITRVFMAVSAQSDDRLGAVVRRAALLGAPVLETTKLDLDALTDS-ATHQGVAI 152

Query: 117 ETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           E       T         A+ ++ LL+ LD V DPHN+GA+LRSA AF  DG+I  +R S
Sbjct: 153 EVPAYEYTTARDLLERAHALGHTPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRS 212

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-K 228
              +A + K ++GA   +   R +NL   L+++   G   +GL       +E     D  
Sbjct: 213 VGVNATVWKVSAGAAARVRVARETNLVRTLEQLKKEGCFVVGLDGSGSTAVEDLTLADSP 272

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + L+ GAEG GL    +ET   +A + +   +++LN + A  ++LY    
Sbjct: 273 LVLVTGAEGAGLSRLVRETCDVLASVPISRSVESLNAAVATGISLYEVDR 322


>gi|237708881|ref|ZP_04539362.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724754|ref|ZP_04555235.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265756251|ref|ZP_06090580.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229436949|gb|EEO47026.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456943|gb|EEO62664.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263233842|gb|EEZ19451.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 268

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 105/248 (42%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 20  LTEAQLRQRIELGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+   + L   +  ++  GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLDGTIGDLNKLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  D    ++  I     ++A+++G EG+GL  KT   A  +  + M   + +LNV+ AA
Sbjct: 197 ALTDDSISIDHPILAAEPRLAIVMGTEGEGLSYKTIAEADYVVRIPMAHGVDSLNVATAA 256

Query: 270 AVALYITQ 277
           AVA +  +
Sbjct: 257 AVAFWQLR 264


>gi|168215515|ref|ZP_02641140.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
           8239]
 gi|182382182|gb|EDT79661.1| RNA methyltransferase, TrmH family [Clostridium perfringens NCTC
           8239]
          Length = 257

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 8/239 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQT 100
           H  +     + G+  V  A+ +    I  ++ T++   +  D    +     +  +    
Sbjct: 23  HRIKSNKYLIEGLRFVEEAIKS-KVSIDSIIFTESFKEKNPDLFLKINENIKLIQMNEAL 81

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + ++   E   QG+              +++ +L++++D V DP N+G I+R+A A    
Sbjct: 82  LKQLCSTE-NPQGIVGVINMQNK----ELKSGELVVLVDKVQDPGNMGTIIRTAHAAGAA 136

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+ TK      +    +S  G++ +IP +   +L D ++ +   G++ +  S   K   
Sbjct: 137 GIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDDSL-DFVKSLKKEGYKLVVSSLQGKNNF 195

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +E    K+ + +G EG G+  K  + A     + MPG  ++LNV+ A ++ +Y     
Sbjct: 196 FEENLQGKVMIAVGNEGNGVSDKVYDIADIKVKIPMPGEAESLNVAVATSIMIYEKIRQ 254


>gi|254189277|ref|ZP_04895788.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157936956|gb|EDO92626.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 262

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    + E   L G H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A   +P L A R +   +VL
Sbjct: 61  HEEARGIVARIEPTRVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTSVVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++           S   + +        +A + G EG G+  + +E AT    +  PG
Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|295696878|ref|YP_003590116.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
 gi|295412480|gb|ADG06972.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus tusciae DSM 2912]
          Length = 271

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 121/280 (43%), Gaps = 20/280 (7%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
            E+I SL+++         +++  ++   +      +       G H V  AL++     
Sbjct: 3   EEEIRSLQNARV-------KEWAALRRGKE----RRRRGTFLAEGPHLVGEALHSGLGIE 51

Query: 69  FQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETA----PLL 122
             L   ++    +            PV+ V  + ++++  +    QG+A        P+ 
Sbjct: 52  VVLFDPRDQTPEVASLVEEARGKGCPVQPVDRRVLERVC-EVITPQGIAAVVRIPERPMP 110

Query: 123 SPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
              ++A      L++ LD + DP N+GA+LR A A    G++  +  +   S    +S+ 
Sbjct: 111 GFAVEAPEEDPVLMVALDGIQDPGNVGAVLRVARAVGVTGVLCGEDTADPFSPKAVRSSM 170

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA   +P  R   L + + + H+ G + +  +       ++   N  + ++LG EG+G+ 
Sbjct: 171 GAAFTVPI-RQGRLVNMIGEWHAKGVEPVETAVGEGVRYDRWNWNIPVMIVLGNEGRGIS 229

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           P+ +       H+ MPG  ++LNV+ AAA+ LY  + H  
Sbjct: 230 PEVRHLCRGKVHIPMPGGGESLNVAVAAALLLYEARRHRG 269


>gi|168492052|ref|ZP_02716195.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|307128172|ref|YP_003880203.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
 gi|183573736|gb|EDT94264.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae CDC0288-04]
 gi|301800735|emb|CBW33383.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|306485234|gb|ADM92103.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae 670-6B]
          Length = 246

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ A  + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVATGILIF 243


>gi|53719753|ref|YP_108739.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
 gi|53723724|ref|YP_103180.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|67641695|ref|ZP_00440464.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
           4]
 gi|121599003|ref|YP_993356.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124384612|ref|YP_001029207.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126438845|ref|YP_001059453.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126448589|ref|YP_001080863.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|126452067|ref|YP_001066736.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|134277081|ref|ZP_01763796.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
 gi|167000565|ref|ZP_02266376.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
 gi|167720148|ref|ZP_02403384.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei DM98]
 gi|167739155|ref|ZP_02411929.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 14]
 gi|167824745|ref|ZP_02456216.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 9]
 gi|167846277|ref|ZP_02471785.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei B7210]
 gi|167894858|ref|ZP_02482260.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 7894]
 gi|167903247|ref|ZP_02490452.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167919498|ref|ZP_02506589.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei BCC215]
 gi|226200151|ref|ZP_03795697.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812792|ref|YP_002897243.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           MSHR346]
 gi|242314873|ref|ZP_04813889.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106b]
 gi|254177512|ref|ZP_04884167.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
 gi|254179337|ref|ZP_04885936.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
 gi|254197657|ref|ZP_04904079.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
 gi|254200132|ref|ZP_04906498.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
 gi|254206470|ref|ZP_04912822.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
 gi|254261411|ref|ZP_04952465.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710a]
 gi|254297221|ref|ZP_04964674.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
 gi|254358122|ref|ZP_04974395.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
 gi|52210167|emb|CAH36146.1| putative RNA methylase protein [Burkholderia pseudomallei K96243]
 gi|52427147|gb|AAU47740.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 23344]
 gi|121227813|gb|ABM50331.1| RNA methyltransferase, TrmH family [Burkholderia mallei SAVP1]
 gi|124292632|gb|ABN01901.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10229]
 gi|126218338|gb|ABN81844.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 668]
 gi|126225709|gb|ABN89249.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106a]
 gi|126241459|gb|ABO04552.1| RNA methyltransferase, TrmH family [Burkholderia mallei NCTC 10247]
 gi|134250731|gb|EBA50810.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 305]
 gi|147749728|gb|EDK56802.1| RNA methyltransferase, TrmH family [Burkholderia mallei FMH]
 gi|147753913|gb|EDK60978.1| RNA methyltransferase, TrmH family [Burkholderia mallei JHU]
 gi|148027249|gb|EDK85270.1| RNA methyltransferase, TrmH family [Burkholderia mallei 2002721280]
 gi|157807495|gb|EDO84665.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 406e]
 gi|160698551|gb|EDP88521.1| RNA methyltransferase, TrmH family [Burkholderia mallei ATCC 10399]
 gi|169654398|gb|EDS87091.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei S13]
 gi|184209877|gb|EDU06920.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 1655]
 gi|225927835|gb|EEH23876.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505869|gb|ACQ98187.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           MSHR346]
 gi|238522656|gb|EEP86099.1| RNA methyltransferase, TrmH family [Burkholderia mallei GB8 horse
           4]
 gi|242138112|gb|EES24514.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1106b]
 gi|243063496|gb|EES45682.1| RNA methyltransferase, TrmH family [Burkholderia mallei PRL-20]
 gi|254220100|gb|EET09484.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei
           1710a]
          Length = 262

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    + E   L G H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A   +P L A R +   +VL
Sbjct: 61  HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTSVVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++           S   + +        +A + G EG G+  + +E AT    +  PG
Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|332362244|gb|EGJ40044.1| SpoU rRNA methylase [Streptococcus sanguinis SK1056]
          Length = 246

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+ +   ++ ++ A      RL   +       V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAV-SSGEELIRIFALAEYAERLGDFSQ------VIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFEREAIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           +   +   +    +S  G+  H+P  R+ +  D ++   S     +  +  S      + 
Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSHLPILASTLSSTSIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  AL++G EG+G+ P+  E A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 NSRESFALVMGNEGQGISPEMTEAADILVHISMNGQAESLNVAVAAGILIF 243


>gi|330718906|ref|ZP_08313506.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537]
          Length = 221

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 13/220 (5%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVK 94
           NQ+S+  +     F+YG H    AL       K+      K                 V+
Sbjct: 2   NQQSK--APANTDFIYGHHASVEALKAGQTINKVLLQSGLKGKHINEILQLAKKKQLVVQ 59

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNI 147
           +VP   +D+I  +   HQG+AL  A     TLD +         +   ++LD + DPHN+
Sbjct: 60  SVPKSKLDEI-SEGGTHQGVALSVAAFQYATLDDLFDRAQEKSETPFFIILDGIEDPHNL 118

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ILR+A A    G+I  KR +   +A +AK ++GA+EH+P +R++NL + +  +   G 
Sbjct: 119 GSILRTADAAGVHGVIIPKRRAVQLTATVAKISTGAIEHVPVVRVTNLANTVTTLKERGL 178

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              G    + +           AL++G EGKG+ P  ++ 
Sbjct: 179 WIFGTDM-AGEDYRHLDATGPTALVIGNEGKGISPLLKKK 217


>gi|171910482|ref|ZP_02925952.1| RNA methyltransferase, TrmH family protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 193

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 79/151 (52%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L++VLD + DPHN+GA LR+A A  CD ++  K  +   S  + + A G  E++P 
Sbjct: 35  KPNPLVLVLDCIQDPHNLGACLRTADAAGCDLVVMPKDKTAPISDTVIRVACGGAENVPI 94

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R++NL  A+ K+   G   +G   + K+ +        I +++GAEG+G+R  T E   
Sbjct: 95  ARVTNLARAMDKLKDLGVWFVGTEDEGKQSIYDVDLKGPIGIVMGAEGEGMRRLTGERCD 154

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  + M G +  LNVS A  V L+      
Sbjct: 155 FLVKIPMTGQVPCLNVSVATGVCLFEVVRQR 185


>gi|160941410|ref|ZP_02088747.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435971|gb|EDP13738.1| hypothetical protein CLOBOL_06303 [Clostridium bolteae ATCC
           BAA-613]
          Length = 274

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 7/257 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +RH              +  AL+     I  L+  K+  ++         
Sbjct: 18  YARLTEGQLLNRHEPDKGVFIAESPKVIERALDAGCVPISMLMEKKHVESQAREIIQRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV       + ++ G       L     P L    +    ++ + VL++V +P N+GA
Sbjct: 78  EIPVYAAEFDVLTQLTGFHLTRGMLCAMYRPPLPGPEEICEGARRIAVLENVMNPTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSW 205
           I RSA A + DG++ T   S        + + G +  IP+     R+S   + +  +   
Sbjct: 138 IFRSAAALNMDGVLLTSACSNPLYRRAVRVSMGTVFQIPWTFLDSRLSWPQEGVGFLREL 197

Query: 206 GFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF T  ++  D    ++    +  +K+A+ILG EG GL   T         + M   + +
Sbjct: 198 GFATAAMALNDDSVSIDDSGLMSEEKLAIILGTEGDGLAAGTIAGCDYTVRIPMSHGVDS 257

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A+AVA +     
Sbjct: 258 LNVAAASAVAFWQLGRR 274


>gi|167816366|ref|ZP_02448046.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 91]
          Length = 262

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    + E   L G H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGEQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A   +P L A R +   +VL
Sbjct: 61  HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTSVVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++           S   + +        +A + G EG G+  + +E AT    +  PG
Sbjct: 179 IERLS---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|15901796|ref|NP_346400.1| spoU rRNA methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|111658860|ref|ZP_01409481.1| hypothetical protein SpneT_02000031 [Streptococcus pneumoniae
           TIGR4]
 gi|14973480|gb|AAK76040.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae TIGR4]
 gi|301802651|emb|CBW35417.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           INV200]
          Length = 246

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNTKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++   +N   +L   A          V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFTLENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|322385982|ref|ZP_08059622.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
 gi|321269965|gb|EFX52885.1| SpoU rRNA methylase [Streptococcus cristatus ATCC 51100]
          Length = 286

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 12/233 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + E+  + G H    AL + +R I ++ A      RL   A          V P+ +  +
Sbjct: 64  RSESYLIEGWHLFEEALASQAR-ILRIFALAEYEERL---AAFSQTI---FVSPEILSDL 116

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A       + +  + L   L+ V DP N+G I+R+A A    G+  
Sbjct: 117 ADS-KTPQGIVAELAFEEQNIPEKLEGAYLF--LEDVQDPGNVGTIIRTADAAGYQGVFI 173

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQE 223
           +   +   +    +S  G+  H+P  R+S   D L        Q +    S+     ++ 
Sbjct: 174 SSHSADIYNLKTLRSMQGSHFHLPIYRVSR-EDMLALARQSDLQILASTLSEYSVDYQKV 232

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K++   L++G EG+G+  +  E A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 233 EKHEDFLLVMGNEGQGISQEMTEVADVLVHISMKGQAESLNVAVAAGILMFAL 285


>gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 313

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 29/300 (9%)

Query: 5   SKKKSEKIFSLKD-SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           + K  ++++     +  A ++R   D  ++ +  +  +  S  + L + G +    AL  
Sbjct: 7   TPKAEDRVYHKAYFAKKAAIKRTFAD-PRLAARRRVDKLGSDSDELVI-GRNAALEALRV 64

Query: 64  --PSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             PS +++       +   R            +       +D+I      HQG+ ++  P
Sbjct: 65  GVPSTQLYVANRIEHDDRTREIVKLAGMQGLRLLEADRLEMDRIA-HSTNHQGIIVKVQP 123

Query: 121 LLSPTLDAVRNS---------------------QLLMVLDHVNDPHNIGAILRSAVAFSC 159
               +L  +                         L + LD V DP N+GA++RSA AF  
Sbjct: 124 YQYHSLQELVERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFGA 183

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+I  +R S S +A   K ++GA  H+P  R+ NL  A+Q +   G+  IGL     K 
Sbjct: 184 NGVILPERRSASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKL 243

Query: 220 L-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + E   + D + ++LG+EGKG+   T+E   ++A + +   +++LN S AA ++LY   N
Sbjct: 244 VGETGFETDPLVVVLGSEGKGMSRLTREACDAIAGIPISSAVESLNASVAAGISLYAVAN 303


>gi|134097236|ref|YP_001102897.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909859|emb|CAL99971.1| hypothetical tRNA/rRNA methyltransferase Rv0881 [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 287

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 4/249 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   GV  V   + +P   +  LL  +  +  L  D   P
Sbjct: 37  DFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPY-PVRALLGVRRRIEALA-DLLAP 94

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P     P  +  +VG       LA+            V  S+ L VL+ V D  N+G
Sbjct: 95  LDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAVLEGVGDHENLG 154

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ R+A A   DG++  +  S        + + G +  +P+ R+ +  D L  +   GF+
Sbjct: 155 ALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDGGFR 214

Query: 209 TIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              L+   D+    E  + +  +A++LG+EG GL  +    A     + M G + +LNV+
Sbjct: 215 VAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSLNVA 274

Query: 267 NAAAVALYI 275
            A A+A + 
Sbjct: 275 TAGAIAFHA 283


>gi|311742538|ref|ZP_07716347.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314166|gb|EFQ84074.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 270

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 9/269 (3%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I  L D    +L     DY +++  + + R  ++       G   V  A+ +       
Sbjct: 3   QIVRLDDPSDPRL----HDYTELRDVSLRRRLETERGLFIAEGEKVVRRAVESGHAPRSF 58

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV 129
           L+A +        D       P   +    I+ + G   VH+G LA    P   P    +
Sbjct: 59  LMAPRWIDG--LGDVIDGTDAPCYVLEESVIEHLTGFH-VHRGALAALERPPARPAATVL 115

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             ++ ++VL+ + D  N+GAI RSA A   D ++ + R +        K + GA+  +P+
Sbjct: 116 AGARRVVVLEDLVDHTNVGAIFRSAAALGWDAVLLSPRCADPLYRRSIKVSMGAVFRLPW 175

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R+ +     + +   GF  + ++  +   P+++   +  +AL++G+EG GL    +  +
Sbjct: 176 ARVDDWASTPELLADAGFTAVAMTLGEGAVPIDEVDTDRPLALVVGSEGHGLTRHWESAS 235

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              A + M   I +LNV+ + AVA +  +
Sbjct: 236 PVRATIPMAEDIDSLNVAASVAVACWQLR 264


>gi|256370003|ref|YP_003107514.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|256000166|gb|ACU48565.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
          Length = 276

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 22/289 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116
           L  ++   +   LL  +N L  L +    LP   PV +VP   +D I G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAIAGFH-VHRGILAV 110

Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
              ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G EG+GL  +  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL----SRFSK 274


>gi|116514430|ref|YP_813336.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093745|gb|ABJ58898.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 254

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 11/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K +    QK ++  +     + G H V  AL   S K  ++LAT+ AL+RL    
Sbjct: 8   NNPQIKAIGKLQQK-KYREESGYYLIEGFHLVEEALK-ASVKYREILATEAALSRLAQLG 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  +       +       Q + +                   ++LD + DP 
Sbjct: 66  LAYDEGKLIKISQSVASHLSST-KNSQDIFMTVKINRPKHFAFSYGK--WVLLDDLADPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG+I + +     +  + +S  G+  H+  I+ ++L DA+  + + 
Sbjct: 123 NVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAA 181

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                    D + K L       ++ALI+G E  G+ P+ +  A    ++ + G  ++LN
Sbjct: 182 DIPVYASLLDPAAKQLGDFAPVAQVALIIGNEAHGVSPEIEALADEKLYIPIKGRAESLN 241

Query: 265 VSNAAAVALYITQNHFA 281
            + AA + +Y    HF+
Sbjct: 242 AAVAAGIMIY----HFS 254


>gi|297700649|ref|XP_002827351.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1,
           mitochondrial-like [Pongo abelii]
          Length = 353

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 112/253 (44%), Gaps = 28/253 (11%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103
             L+G+     AL    R + +LL            A L         PV     Q +D 
Sbjct: 50  ELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDT 109

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +   + VHQG+ +E +PL          +       QL +VLD + DPHN GA+LRSA  
Sbjct: 110 MCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPHNFGAVLRSAHF 168

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-- 214
              D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+   G     
Sbjct: 169 LGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCP 228

Query: 215 ------DSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIK 261
                  S+ P+    + + +    L+LG EG GL  + Q +   +  +     +P  ++
Sbjct: 229 SAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLE 288

Query: 262 ALNVSNAAAVALY 274
           +LNVS AA + L+
Sbjct: 289 SLNVSVAAGILLH 301


>gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 254

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 97/238 (40%), Gaps = 11/238 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +    F+ G   V  AL +     + ++     +     D  + H         + I 
Sbjct: 23  RYEEGMFFVEGTTNVLEALKSDFEIEYIVMGEGVKIDIPKGDFEIVH-------TTERIF 75

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           K +      Q +              ++   + ++ D++ DP N+G I+R+A AF    I
Sbjct: 76  KKISDTVTPQMVMAIIKIPKYVENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAI 135

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
            T        +  + +++ G++ HIP I  ++    L K+   G +       ++K + +
Sbjct: 136 FTINNCVDVFNPKVLRASMGSIFHIPVIAATS--QILLKLKQRGIKVFATYLKAQKLVHE 193

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +DK+A +LG E KG+     +       + M G  ++LNVS AA++ LY +Q   
Sbjct: 194 CNISDKVAFVLGNEAKGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 249


>gi|328946840|gb|EGG40977.1| SpoU rRNA methylase [Streptococcus sanguinis SK1087]
          Length = 269

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+++ +  I          A  ++   L     V  V P+ +  +
Sbjct: 47  RKDSYLIEGWHLFEEAVSSGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 99

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 100 ADS-KTPQGIVAEVAFEREKIPAELSGHYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 156

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223
           +   +   +    +S  G+  H+P  R+ +  D ++   S     +  +   +     + 
Sbjct: 157 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSSLPILASTLSLTSIDYREV 215

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +   L++G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++
Sbjct: 216 DSKESFVLVMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 266


>gi|261366641|ref|ZP_05979524.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
           variabile DSM 15176]
 gi|282571463|gb|EFB76998.1| RNA methyltransferase, TrmH family, group 3 [Subdoligranulum
           variabile DSM 15176]
          Length = 260

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 16/255 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
              Q  +  ++G + V+  L +      ++   +   A+A             VK VP  
Sbjct: 8   QAPQHTDTLVWGKNPVTELLKSGETVDTVYLADSLPQAVAGYYTALAKQSGAVVKRVPGN 67

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            + K+ G    HQG+A   A +   +L+ +         +  L++ D V DPHN+GAI+R
Sbjct: 68  KLQKLCGTPD-HQGVAARAAEVQYASLEDLFAAASAKNEAPFLVLCDGVEDPHNLGAIIR 126

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA      G++  KR     +  + K+++GA   +P  R++NL  A++ +          
Sbjct: 127 SAYLCGAHGVVIPKRGGVGVTGTVMKASAGAAARLPVARVTNLAQAIRTIKEHNVFVYCA 186

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNA 268
                 PL +   +  +AL+LG+EG G    T++   +   L M       + + NVS A
Sbjct: 187 DLGGA-PLSRTDLSGPVALVLGSEGGGPGALTRKLCDAAVTLEMAPGQATGVDSYNVSVA 245

Query: 269 AAVALY-ITQNHFAK 282
           A +  Y + +   A+
Sbjct: 246 AGILCYDVLRRRTAQ 260


>gi|25011695|ref|NP_736090.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           NEM316]
 gi|24413235|emb|CAD47314.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 247

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A      +   +  T+ A+ RL      P    V  V    + ++
Sbjct: 25  RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRL----RKPEEAIV--VTDDVLKEL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +   QG+  E A   +   D  +     +VL+ V DP N+G ++R+A A + D +  
Sbjct: 78  TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 134

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  H+P  R+  +   +    + G   I  + S+     +  
Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 193

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 194 PKYDHFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244


>gi|119513673|ref|ZP_01632675.1| rRNA methylase [Nodularia spumigena CCY9414]
 gi|119461678|gb|EAW42713.1| rRNA methylase [Nodularia spumigena CCY9414]
          Length = 261

 Score =  202 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 105/270 (38%), Gaps = 15/270 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           + SL++S   ++R+ H            ++   + +   L G H +  A       +   
Sbjct: 2   LTSLQNSLVKQIRKLH-----------STKERHKQQLCLLEGTHLLQEACVVNYPLVTVC 50

Query: 72  LATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
              +   A  + W+A   H   V+ V  + +  I        G+       ++ T   V 
Sbjct: 51  CTPEWQTAHPELWEAACSHSDRVEIVSKEILAAIA-TTVQPDGVVATAQRAINQT--QVP 107

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L++ L+ + DP N+G I+R+A A    G+  +      +S  + ++++G    +   
Sbjct: 108 FTGLVLALETIQDPGNLGTIIRTAAATGATGLWLSDDSVDLDSPKVLRASAGQWFRVATA 167

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +L   +Q+    G Q +     +              ++LG EG GL P     A  
Sbjct: 168 VSQDLKATIQQSQQAGMQVVATLPTANLTYWDVDWRKPSLILLGNEGAGLSPDLASMADK 227

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + +   +++LNV+ AAA+ +Y  Q   
Sbjct: 228 QVKIPLSSGVESLNVAIAAALMMYEAQRQI 257


>gi|149007448|ref|ZP_01831091.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|225861791|ref|YP_002743300.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|147761020|gb|EDK67989.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|225727319|gb|ACO23170.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|332071951|gb|EGI82439.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17545]
          Length = 246

 Score =  202 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++   +N   +L   A          V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFTLENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|167563173|ref|ZP_02356089.1| RNA methyltransferase, TrmH family protein [Burkholderia
           oklahomensis EO147]
 gi|167570356|ref|ZP_02363230.1| RNA methyltransferase, TrmH family protein [Burkholderia
           oklahomensis C6786]
          Length = 262

 Score =  202 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 108/261 (41%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +     L G+H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGGQALLEGLHLASAYLDTAGQPELCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L          + V ++   +VL
Sbjct: 61  HAEAREIVGRVEPARLVTLPDALFGQLSNVVNGVGLLLLVERPAPALPERVVDTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      ++   
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVQQVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDVDTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++           S   + ++    +  +  + G EG G+  + ++ AT    +  PG
Sbjct: 179 IERLA---VPVALTDSHGARAIDDCDLSGPVVWVFGNEGAGVSARWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAA+ L+     
Sbjct: 236 GMESLNVAAAAAICLFEQCRQ 256


>gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 255

 Score =  202 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 113/275 (41%), Gaps = 25/275 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M++I+   ++++               +D+KK+     + +   +     L G H V  A
Sbjct: 1   MDIITSSSNQRV---------------KDWKKL----SQKKARIKQGKYMLDGWHLVKEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++L T++   R + +  +P    V  +      K + +    QG+      
Sbjct: 42  ILFDQ-PISEILVTQDFKHRNELE--VPDNVEVIEISDNV-AKHLSETPSPQGIFAVVNL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +      + +   + LD V DP NIG ++R+A A    G++  +  +      + ++ 
Sbjct: 98  PENAEEKPKKATGAWLFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+      NL +  ++         G    D  +  +Q  ++   AL++G EG G
Sbjct: 158 QGSQFHLKLCS-GNLIEWAKEFKQRKLPVFGSELNDQARSYDQVGRHSDFALVMGNEGNG 216

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  K  +  +   ++ + G  ++LNV+ AA + ++
Sbjct: 217 MSEKLLKETSLNLYIPIKGHAESLNVAVAAGILMF 251


>gi|225388537|ref|ZP_03758261.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
           DSM 15981]
 gi|225045382|gb|EEG55628.1| hypothetical protein CLOSTASPAR_02273 [Clostridium asparagiforme
           DSM 15981]
          Length = 279

 Score =  202 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 104/273 (38%), Gaps = 23/273 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K++ +   K++   +       G+            ++  L  T++    +  + 
Sbjct: 6   SNKQVKRVVNLRAKAKARREENCYVAEGLRMCREL---SPDQVEMLYVTED-FGSVPGNR 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------------- 131
                FP +TV    ++ +       QG+            + +                
Sbjct: 62  RWLAGFPHETVSDVVMNYMADT-KTPQGVLAVVKQRHYRLEELLPQAGKQIPKTSVPVGK 120

Query: 132 ----SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                  LM+L+ + DP N+G ILR+       G++  +  +   +  + +S  G++  +
Sbjct: 121 NPPAPACLMILETLQDPGNLGTILRAGEGAGITGLVMNRDTADIYNPKVIRSTMGSILRV 180

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P++ + +L+ AL ++ S G +            +QE     I  ++G E  GL  +T   
Sbjct: 181 PFVYVDDLSAALAQIKSAGVRLFAAHLKGTNNYDQEDYTGNIGFLIGNEAAGLTEETAAM 240

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G +++LN + A++V ++      
Sbjct: 241 ADCYIKIPMAGQVESLNAAVASSVLMFEAARQR 273


>gi|15606918|ref|NP_214299.1| rRNA methylase [Aquifex aeolicus VF5]
 gi|2984156|gb|AAC07690.1| rRNA methylase [Aquifex aeolicus VF5]
          Length = 240

 Score =  202 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 109/239 (45%), Gaps = 9/239 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKI 104
            +   ++G + +  AL    R + ++    ++   +   +        V+ +  + ++++
Sbjct: 2   EKKFVIWGRNPIIEALR-AGRNLEKIYVAHDSHPPKELLELAKKRGVKVQRISRKKVEEL 60

Query: 105 VGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            G +   QG+    +P+   +      + +      +V+DH+ DP N+G +LR+      
Sbjct: 61  AGTKKT-QGVVALLSPVNYVSPHELFKECIEKKSFFIVIDHITDPQNVGNLLRTCEVLGG 119

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G + +K  +   +  + K++SGA+ H+   ++S+L+  L+     G     +     K 
Sbjct: 120 VGALISKDRTSPINETVVKASSGAVFHLKISKVSSLSRELKNFQKMGGWVFAVE-KGGKD 178

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +      +AL+LG+E KG+     + +  +  + M G + +LNV +A A+A++ T  
Sbjct: 179 IREVDIPLPVALVLGSEDKGVSKSVLDISDQIVTIPMKGKVTSLNVGSAGAIAMWETAK 237


>gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162]
          Length = 258

 Score =  202 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 100/256 (39%), Gaps = 6/256 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +   NQK++   +       G      A   P   I ++   ++ L   +   
Sbjct: 6   QNTQVKNVIKLNQKAKARREQGLFIAEGRKMFLEA---PDDWIEKVYVAESLLDD-EEIM 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDP 144
                F    V      ++   +   QG+            D ++  + LLMVL+ + DP
Sbjct: 62  QKAGRFSWDAVENSVFRQMSDTQ-TPQGVLTVLRQPSYQLEDLLKQEAPLLMVLEDLQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G I+R+       G+  TK      +  + ++  G++  IP+  + ++    QK+ +
Sbjct: 121 GNAGTIIRTGEGAGIGGVFLTKTCVDITNPKVIRATMGSIYRIPFFYVEDVVLLKQKLQN 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G +        K   ++E   +  A ++G EGKGL  +  + A  +  + M G +++LN
Sbjct: 181 CGIRFFAAHLQGKNAYDRESYQEGTAFLIGNEGKGLTDRAADAADCLIRIPMCGHVESLN 240

Query: 265 VSNAAAVALYITQNHF 280
            + A  + +Y      
Sbjct: 241 AAMAGGILMYEAARQR 256


>gi|168487111|ref|ZP_02711619.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569960|gb|EDT90488.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC1087-00]
          Length = 246

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++   +N   +L   A          V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFTLENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQR 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|295398832|ref|ZP_06808826.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294972922|gb|EFG48755.1| TrmH family RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 264

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 105/252 (41%), Gaps = 6/252 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  K+++    + +   +     L G H V  A+   +         +++   +    
Sbjct: 10  QNQQIKELKKLFTR-KGRKKAGQYLLEGPHLVEMAVKADAEIQMIYYVPESSHQNVMQIQ 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L    P+  V P+    +   +  HQ +        + +LD  + ++ L++LD V DP 
Sbjct: 69  ALKADLPLTQVTPEVAKALSQTD-HHQDIFAVANIPQAKSLDIDQLTKGLLILDQVQDPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A AF    ++         +  + +S  G+   +    + +L + + ++   
Sbjct: 128 NLGTLIRTADAFGYRDVLLGLGTVDLYNDKVLRSMQGSHFAVNTYEV-DLVEVIPQLQEA 186

Query: 206 GFQTIGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           G+       ++              K AL++G EG G+   T + A +  ++ M G  ++
Sbjct: 187 GYFITTTELNNQAKASNAFDLKSKGKWALVMGNEGNGVSQTTSQLADAALYIPMSGSAES 246

Query: 263 LNVSNAAAVALY 274
           LNV+ A A+ +Y
Sbjct: 247 LNVAVAGAIVMY 258


>gi|225445088|ref|XP_002280407.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 595

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 132/336 (39%), Gaps = 64/336 (19%)

Query: 1   MNLISKKKSEKIF----SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF------ 50
           M +I   + +KI        D      R   R + K +++ +K+      E+        
Sbjct: 240 MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKT-WKEATESTIPKIVGE 298

Query: 51  -LYGVHTVSAALNNPSRKIFQLLATKN-----------ALARLDWDANLPHPF--PVKTV 96
            +YGV  V AAL+   R+ + L   +                 +    L       +K +
Sbjct: 299 GIYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEKIGLSIKDL 358

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
               ++ +V     HQGL L+ +PL       L P L       L + LD V DP N+GA
Sbjct: 359 SKHDLN-MVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVTDPQNLGA 417

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA  F   G++   + S   S V++K+++G+LE +      N+   L      G+Q 
Sbjct: 418 IIRSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSSAENGWQV 477

Query: 210 IGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH------------- 255
           +G S   +  PL +        L+LG+EG GLRP  + + T +  +              
Sbjct: 478 LGGSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPVHVTAGEVE 537

Query: 256 ------MPGI-----------IKALNVSNAAAVALY 274
                 M              +++LNVS AA V L+
Sbjct: 538 DVDTSEMDRRCLTEDFQSFLAVESLNVSVAAGVLLH 573


>gi|17986712|ref|NP_539346.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|23502453|ref|NP_698580.1| RNA methyltransferase [Brucella suis 1330]
 gi|161619530|ref|YP_001593417.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163843839|ref|YP_001628243.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|225628025|ref|ZP_03786061.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|225853064|ref|YP_002733297.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|254689771|ref|ZP_05153025.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870]
 gi|254694260|ref|ZP_05156088.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str.
           Tulya]
 gi|254702308|ref|ZP_05164136.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513]
 gi|254704836|ref|ZP_05166664.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686]
 gi|254710622|ref|ZP_05172433.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94]
 gi|254714806|ref|ZP_05176617.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1]
 gi|254717866|ref|ZP_05179677.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1]
 gi|256032115|ref|ZP_05445729.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1]
 gi|256045207|ref|ZP_05448106.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061637|ref|ZP_05451776.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33]
 gi|256114159|ref|ZP_05454913.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160311|ref|ZP_05458005.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1]
 gi|256258023|ref|ZP_05463559.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68]
 gi|256263453|ref|ZP_05465985.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|260169250|ref|ZP_05756061.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. F5/99]
 gi|260755304|ref|ZP_05867652.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260884319|ref|ZP_05895933.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261214568|ref|ZP_05928849.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219713|ref|ZP_05933994.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261318195|ref|ZP_05957392.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322602|ref|ZP_05961799.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261325647|ref|ZP_05964844.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261752875|ref|ZP_05996584.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755532|ref|ZP_05999241.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|265989226|ref|ZP_06101783.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991641|ref|ZP_06104198.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995478|ref|ZP_06108035.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998688|ref|ZP_06111245.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|297248855|ref|ZP_06932573.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|17982336|gb|AAL51610.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|23348443|gb|AAN30495.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|161336341|gb|ABX62646.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163674562|gb|ABY38673.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|225617188|gb|EEH14234.1| 23S ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|225641429|gb|ACO01343.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|260675412|gb|EEX62233.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873847|gb|EEX80916.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916175|gb|EEX83036.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260924802|gb|EEX91370.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261295292|gb|EEX98788.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297418|gb|EEY00915.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261301627|gb|EEY05124.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261742628|gb|EEY30554.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261745285|gb|EEY33211.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262553312|gb|EEZ09146.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766591|gb|EEZ12380.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002425|gb|EEZ15000.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093460|gb|EEZ17510.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661423|gb|EEZ31684.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|297176024|gb|EFH35371.1| RNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|326409607|gb|ADZ66672.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
 gi|326539310|gb|ADZ87525.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
          Length = 276

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 22/289 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116
           L  ++   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
              ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G EG+GL  +  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL----SRFSK 274


>gi|226364458|ref|YP_002782240.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226242947|dbj|BAH53295.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 278

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++         +   GV      L +    I  LL     L  L  D +  
Sbjct: 27  DFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLASRFDPI-ALLGVDRRLEELAGDLD-G 84

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + ++VG       LA    P      D + +S+ + VL+ VND  N+G
Sbjct: 85  VDVPYYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHSRTVAVLEGVNDHENLG 144

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D ++  K  +        + + G +  +P+  ++     L  +   GFQ
Sbjct: 145 SMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPHDLDALRERGFQ 204

Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ +     L + +  +K+AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 205 LISLTPNPGAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGTDSLNVAT 264

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 265 AAAMAFYERVR 275


>gi|167766952|ref|ZP_02439005.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
 gi|167710927|gb|EDS21506.1| hypothetical protein CLOSS21_01469 [Clostridium sp. SS2/1]
          Length = 273

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 10/229 (4%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           A       I  L+  ++   +           PV T     + ++ G       L     
Sbjct: 47  AFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVLKQLTGFGLTRGMLCAMRR 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L        +++ +++L++V +P N+GAI RSA A + D I+ +K  S        + 
Sbjct: 107 KPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRV 166

Query: 180 ASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALIL 233
           + G +  IP+  + +     D + ++   G++ + ++  D    ++ E     DK+A+IL
Sbjct: 167 SMGTVFQIPWTFLGDDTWPADGMHRLKELGYKNVAMALTDRSVSIDDEALMSEDKLAIIL 226

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G EG GL  +T +       + M   + +LNV+ A+AVA +      AK
Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFW----QLAK 271


>gi|184200893|ref|YP_001855100.1| RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581123|dbj|BAG29594.1| RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 275

 Score =  202 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 9/274 (3%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
             SE+I  L D    ++     DY  +   + + +   +           +  AL+   R
Sbjct: 6   PLSERIVELSDPADPRV----ADYTSLTDVSLRRKLEPERGLYLAESSKVLRRALDAGHR 61

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
                   +  L  L  D    +  PV     + +++I G       +A    P   P  
Sbjct: 62  P-RSFFMAEKWLDGL-RDVLEAYDVPVYVGADEVLEQITGFHLHRGAMAAMHRPEPLPLE 119

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + +++ + +L+ + D  N+GAI RSA A   D ++ T R +        + + G +  
Sbjct: 120 SVLASARRVAILEDIVDHTNVGAIFRSAAALDVDAVLVTPRCADPLYRRAVRVSMGTVFQ 179

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPK 243
           +P++R+ + T  LQ++   GF T  L+ SD    ++       +K+ALILG EG+GL   
Sbjct: 180 VPWVRLEHWTADLQRVKDAGFLTAALALSDDAVTVDALAAEAPEKLALILGTEGQGLGAA 239

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           T   A     + M   + +LNV+ A+AVA + T+
Sbjct: 240 TLHHADRHVIIPMSHGVDSLNVAAASAVAFWETR 273


>gi|225871153|ref|YP_002747100.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700557|emb|CAW95049.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 245

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 101/232 (43%), Gaps = 14/232 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A  +    I  +   +    RL           V  V P+ + ++
Sbjct: 23  RKHSYLIEGWHLFEEAQRSGQELIH-IFVLEEMAERLSGFDQ------VVIVSPEILKEL 75

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E          +     L+  L+ + DP N+G I+R+A A   DG+  
Sbjct: 76  TSS-PNPQGIIAEVKLCQQALPTSYAGKYLI--LEDIQDPGNLGTIIRTADAAKFDGVFL 132

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           +++ +   +    +S  G+  H+P  R +++    Q M       +  +  S+  ++ + 
Sbjct: 133 SEKSADVYNQKTLRSMQGSHFHLPIWR-TDIYQVSQVMQQQKIPVLATTL-SQDSIDYKD 190

Query: 225 KNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            + +  +AL+LG EG+G+ P+    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 191 LSARSSLALVLGNEGQGISPEMAALADQLIHISMPGQAESLNVAVAAGILIF 242


>gi|148998503|ref|ZP_01825944.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|183603868|ref|ZP_02722493.2| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
 gi|307068582|ref|YP_003877548.1| rRNA methylase [Streptococcus pneumoniae AP200]
 gi|147755696|gb|EDK62742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|183577619|gb|EDT98147.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae MLV-016]
 gi|306410119|gb|ADM85546.1| rRNA methylase [Streptococcus pneumoniae AP200]
          Length = 246

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTAEAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ A  + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVATGILIF 243


>gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 266

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 102/253 (40%), Gaps = 11/253 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANL 87
           K +    Q SR   +   + L G+H   + L      + ++   + A  + +      +L
Sbjct: 17  KALARLVQHSRDRRKEGVMVLEGIHLAESCLQAGGE-LSRIYLNEAAAGKPEVRRLLDSL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P    V ++P   + K+    +   G  L  +P  SP     + ++  ++L+ + DP N+
Sbjct: 76  PPGSTVVSLPEAVMSKVTALASA--GELLALSPRPSPEAPPAQAAR--VMLEDIQDPGNL 131

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+A A     +  +K      S  + ++  GA   +     ++L     ++  +G 
Sbjct: 132 GTILRTAAAAGVYDVFLSKGCVDVFSPKVLRAGMGAHFALRIHEHADLAG---ELSRFGG 188

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + +    +    L        +A + G EG G+       A +   + MPG  ++LNV+ 
Sbjct: 189 RKLVTHLEGSSSLYGHDLTGPVAFVFGNEGAGVSDALLALADARIRIPMPGHAESLNVAM 248

Query: 268 AAAVALYITQNHF 280
           AA V L+      
Sbjct: 249 AATVCLFERVRQL 261


>gi|22002552|gb|AAM82703.1| rRNA methylase-like protein [Synechococcus elongatus PCC 7942]
          Length = 258

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 102/261 (39%), Gaps = 12/261 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82
            R +   K+++  +Q ++   Q     L G H +  A+      + Q+ AT    +   +
Sbjct: 4   SRQNPLTKQIRQLHQ-AKGRRQMGAFLLEGTHLLQEAIATNW-PLLQVCATPACRINTRN 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV- 141
             +      P +TV    +  +        G+    +     +      +   ++ D V 
Sbjct: 62  SGSRAIQAAPEQTVSDDLLAYLC-TTVNPDGVVANRSTAAPAS-----TAHFSLLADAVE 115

Query: 142 --NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
              DP N+G I+R+A A   DG+  T      +   + ++++G    +P    ++L   L
Sbjct: 116 TLQDPGNLGTIIRTAAAAGADGLWLTADGVDPDHPKVLRASAGQWFRLPIAIATDLGQTL 175

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +     G+Q +     +   L Q        L+LG EG GL P     A S   +     
Sbjct: 176 RSWQQQGYQIVSTLPRATTTLWQADLTRPTVLLLGNEGAGLSPDLAAIADSAVTIPQAAG 235

Query: 260 IKALNVSNAAAVALYITQNHF 280
           +++LNV+ AAA+ LY  +   
Sbjct: 236 VESLNVAIAAALLLYEARRQR 256


>gi|194217234|ref|XP_001917920.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Equus caballus]
          Length = 355

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 119/270 (44%), Gaps = 28/270 (10%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---- 87
           +++  +      S+     L+G+     AL    R++ +LL            A L    
Sbjct: 35  RLRLDDLAPTVRSETGLELLFGLSPCLLALQAARRRVARLLLQAGRSGLQGERAELLRAA 94

Query: 88  -PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLD 139
                PV     + +D +   + VHQG+ +E +PL        R ++       L ++L+
Sbjct: 95  EAQDIPVLRPRRKQLDALCHYQ-VHQGVCMEVSPLRPLPWTESREARPGDDPQQLWLILE 153

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+GA+LRSA     D +IT++R S   + V++K+++GA+E +      +L   L
Sbjct: 154 GLQDPRNLGAVLRSAYFLGVDKVITSRRNSCPLTPVVSKASAGAVEVMDVFSTDDLAGFL 213

Query: 200 QKMHSWGFQTIG--------LSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETA 248
           Q     G+   G         S  S+ P+    + + +    L+LG EG GL  + Q + 
Sbjct: 214 QVKARQGWLVAGTVGCPGPETSLSSEMPITSCLEFVWDQPTLLVLGNEGSGLSQEVQASC 273

Query: 249 TSMAHL-H---MPGIIKALNVSNAAAVALY 274
             +  +     +P  +++LNVS A  + L+
Sbjct: 274 QVLLTILPGRQLPPGLESLNVSVATGILLH 303


>gi|322375834|ref|ZP_08050345.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
 gi|321279102|gb|EFX56144.1| SpoU rRNA Methylase family protein [Streptococcus sp. C300]
          Length = 252

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L      P       V  + +  +   +   QG+      
Sbjct: 46  VQAGV-TIEKVFALESYRDQL---VAFPQTI---WVSEEILLDLADTQ-TPQGIVAVIQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L   L+ V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGLPDLHQGKYLF--LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  R+  L   +++        +  + S   K   +    +   L++G EG+G
Sbjct: 156 QGSHFHLPIYRMP-LVSFVEEAKKSNLPILATTLSRESKDYRELSSLENFVLVMGNEGQG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 215 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 249


>gi|293364739|ref|ZP_06611456.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
 gi|291316189|gb|EFE56625.1| SpoU rRNA methylase [Streptococcus oralis ATCC 35037]
          Length = 246

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L      P       V  + +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALESYRDQL---VAFPQTV---WVSEEILRDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L   L+ V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDFRQGKYLF--LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  R+  L   +++        +  + S   K   +    +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMP-LVSFVEEAKKSNLPILATTLSRDSKDYRELSSLENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|54022618|ref|YP_116860.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54014126|dbj|BAD55496.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 267

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +   +++         +   GV  V   L++       LL       +L  D    
Sbjct: 17  DFRDLSDADRRPDLPGGKGLVIAEGVVVVQRMLDSRFTP-SALLGVARRYDQLAADLA-A 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + +IVG       LA+   P      + V  ++ + VL+ VND  N+G
Sbjct: 75  VDVPYYRTSAEVMAEIVGFHLNRGVLAVARRPPELSMAEVVARARTVAVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D ++   R S        + + G +  +P+ R+    D L  +   GFQ
Sbjct: 135 SMFRNAAGLGVDAVLFGDRCSDPLYRRSVRVSMGHVLRVPFARVPAWPDGLATLREHGFQ 194

Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I ++ D + + L   +  +++AL+LGAEG GL  +        A + M     +LNV+ 
Sbjct: 195 LIAMTPDPAARNLASAMTGERVALLLGAEGPGLTAEAMRACDVRARIPMTPGTDSLNVAT 254

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 255 AAAMAFYERVR 265


>gi|154482486|ref|ZP_02024934.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
           27560]
 gi|149736687|gb|EDM52573.1| hypothetical protein EUBVEN_00153 [Eubacterium ventriosum ATCC
           27560]
          Length = 270

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 4/251 (1%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +RH  +           V  AL+     I  L+  ++   +         
Sbjct: 18  YARLSEGQLLNRHEPEKGIFIAESPIVVERALDAGCEPISILVEDRHIKNQAKNIIERCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P+ T P   +  I G +     L     P L    +  ++ + + VL+++ +P N+GA
Sbjct: 78  NIPIFTAPFDVLTGITGFKLTRGMLCAMHRPKLKTVEEICKDKRRVAVLENIMNPTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQ 208
           I RSA A + D ++ T   S        + + G +  IP+  I       ++ +H+ GF+
Sbjct: 138 IFRSAAALNIDAVLLTHGCSNPLYRRAIRVSMGTVFQIPWTFIDEKEGTGIELLHNMGFK 197

Query: 209 TIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           T  ++  D+   ++       +K+A+ILG EG+GL   T  ++     + M   + +LNV
Sbjct: 198 TAAMALTDNSVSIDDKNVKSEEKLAIILGTEGEGLHQNTINSSDYTIKIPMSHGVDSLNV 257

Query: 266 SNAAAVALYIT 276
           + A+AVA +  
Sbjct: 258 AAASAVAFWEL 268


>gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
 gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
          Length = 244

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 117/250 (46%), Gaps = 19/250 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N++  K+     QK +   +     + G H V  A    +  + +L   +          
Sbjct: 6   NNKKIKEYAKLIQK-KERDKTNLFLVEGEHMVKEA--YNANALQELFILEG--------I 54

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
             P  F  +TV  Q ++K+  + +  + + +     L P  +       +++LD+V DP 
Sbjct: 55  ECPIQFNYETVTQQVLNKLSNQNSNSKMIGVCKKLNLKPVKEEN-----ILLLDNVQDPG 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+A +F  D I  +K  +   +    +S+ GAL +IP I+ ++L + ++K+   
Sbjct: 110 NVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFYIPVIQ-TDLVEEIKKLQER 168

Query: 206 GFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             +    +   K K L+    + K A+++G EG+G+R +  + +  +  + M    ++LN
Sbjct: 169 NIEVYATALHDKHKDLQDIKPSKKYAILVGNEGQGVRKELIDLSNHIVKIEME-TFESLN 227

Query: 265 VSNAAAVALY 274
           V+ A ++ +Y
Sbjct: 228 VAIATSICMY 237


>gi|22537746|ref|NP_688597.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76788278|ref|YP_330224.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|76799024|ref|ZP_00781219.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           18RS21]
 gi|22534636|gb|AAN00470.1|AE014264_25 RNA methyltransferase, TrmH family [Streptococcus agalactiae
           2603V/R]
 gi|76563335|gb|ABA45919.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|76585610|gb|EAO62173.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           18RS21]
 gi|319745519|gb|EFV97821.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 247

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A      +   +  T+ A+ RL              V    + ++
Sbjct: 25  RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRLRKPERAI------VVTDDVLKEL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +   QG+  E A   +   D  +     +VL+ V DP N+G ++R+A A + D +  
Sbjct: 78  TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 134

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  H+P  R+  +   +    + G   I  + S+     +  
Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 193

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 194 PKYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244


>gi|256826592|ref|YP_003150551.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
 gi|256582735|gb|ACU93869.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
          Length = 284

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 111/259 (42%), Gaps = 12/259 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWD---A 85
           Y ++     ++R   +           ++ AL    + +  L+  ++ A AR   +   A
Sbjct: 17  YARLTEAQLRNRLEPERGLFIAESPKVIARALAAGMQPLSFLMERQHLAAARTLIEGCTA 76

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV T   + + ++ G E     L     P L    D + N++ + VL+ + D  
Sbjct: 77  EDGSDIPVFTGSTEILSRLTGFELTRGVLCAMRRPALPSVEDLLANARRVAVLEGIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----ALQ 200
           N+GA  RSA A   D ++ T            + + G +  +P+ RI    D      L+
Sbjct: 137 NVGAAFRSAAALGIDAVLVTPTCCDPLYRRSVRVSMGTVFQVPWTRIGQTPDDWPDRGLE 196

Query: 201 KMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           ++H+ GF T  ++ SD+   L     N  +++A+I+G EG GL  +T         + M 
Sbjct: 197 RLHACGFSTAAMALSDNSVSLSDAALNACERLAIIMGTEGDGLAKRTIAQCDFTVRIPMR 256

Query: 258 GIIKALNVSNAAAVALYIT 276
             + +LNV+ A+AVA Y  
Sbjct: 257 HGVDSLNVAAASAVAFYQL 275


>gi|323490473|ref|ZP_08095680.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
           MPA1U2]
 gi|323395877|gb|EGA88716.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
           MPA1U2]
          Length = 255

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 7/249 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K  +  +   +   +     + G H    AL      +  L+  +       WD 
Sbjct: 8   QNSLVKHWKKLSTTRKERDKFAEFLVEGFHLTEEALRK-KDLVKSLIVREGVDIPEGWDI 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                    +V      +I   E   QG+    A     T D  ++   L+++D V DP 
Sbjct: 67  ---EGVAHYSVTATVAKEISETEHT-QGIFAHCA-QPEFTEDEQKSWTKLLMIDAVQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A A   D +I  K  +   +    +SA G+   I  ++   L +  ++  + 
Sbjct: 122 NIGTMIRTASASGIDAVILGKGCADPYNPKTVRSAQGSHFQISIVK-GELMEWTEQTKAS 180

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G +  +  P+ +    ++ ALI+G EG G+ P   +       + + G  ++LNV
Sbjct: 181 GIPIFGTALQNSTPVHEAKTLEQFALIVGNEGSGVDPVLLQQTDQNLMVPLYGNAESLNV 240

Query: 266 SNAAAVALY 274
           + A  + LY
Sbjct: 241 AVATGILLY 249


>gi|291005305|ref|ZP_06563278.1| putative tRNA/rRNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 270

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 106/249 (42%), Gaps = 4/249 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   GV  V   + +P   +  LL  +  +  L  D   P
Sbjct: 20  DFRDLSTADRRPDRPGGRGLVIAEGVVVVERLVASPY-PVRALLGVRRRIEALA-DLLAP 77

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P     P  +  +VG       LA+            V  S+ L VL+ V D  N+G
Sbjct: 78  LDVPAYVAEPDVMASVVGFHLNRGVLAVADRAPELTAEHLVATSRRLAVLEGVGDHENLG 137

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ R+A A   DG++  +  S        + + G +  +P+ R+ +  D L  +   GF+
Sbjct: 138 ALFRNAAALGVDGVLLGEGCSDPLYRRSVRVSMGHVLRVPFTRLKSWPDDLDLLRDGGFR 197

Query: 209 TIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              L+   D+    E  + +  +A++LG+EG GL  +    A     + M G + +LNV+
Sbjct: 198 VAALTPRADAVSLREAALDSGPVAVVLGSEGPGLTEQAIAAADVAVRIPMAGGVDSLNVA 257

Query: 267 NAAAVALYI 275
            A A+A + 
Sbjct: 258 TAGAIAFHA 266


>gi|229492736|ref|ZP_04386537.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
 gi|229320395|gb|EEN86215.1| tRNA/rRNA methyltransferase [Rhodococcus erythropolis SK121]
          Length = 276

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 13/251 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNP-----SRKIFQLLATKNALARLD--WDANLPHPF 91
           ++    +     + G ++V+  LN       +R +  L  T++A  R     D  L    
Sbjct: 19  RTAERRKAGRFLVEGENSVTELLNGALSNGEARPVHDLFYTEDAAERYQHVIDRALTAGV 78

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGA 149
            V  V  + I  +         +A   + LL   L A   + ++LL V   VN+P N G 
Sbjct: 79  SVALVTDRAIKALSDTVTPPGLVA--VSDLLDVPLSAAVHQETRLLAVPVEVNEPGNAGT 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++R A A   D  I         +  + +S++G+L H+P +R  +    ++++ + G Q 
Sbjct: 137 VIRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVVRDRDTVSVIEQIRAAGIQI 196

Query: 210 IGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +  ++D +  L++     +   A + G E  GL P     A     + + G  ++LN++ 
Sbjct: 197 LATAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLAT 256

Query: 268 AAAVALYITQN 278
           AAA+ LY +  
Sbjct: 257 AAAICLYASAR 267


>gi|163868747|ref|YP_001609964.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
           105476]
 gi|161018411|emb|CAK01969.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           tribocorum CIP 105476]
          Length = 271

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 114/251 (45%), Gaps = 11/251 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  ++  +   R     +     G  T+SA L++       LL     L  L      
Sbjct: 17  RDYHNIREKDLVGRQ----QQFIAEGKITLSALLHSKEFSALSLLIVAKRLPGLLPLLEK 72

Query: 88  PHP-FPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRNSQLLMVLDHVN 142
             P  P+  VP + +D I G   VH+G+      +T P L   L  +    L++VL  ++
Sbjct: 73  TQPPCPIYCVPQKVMDDITGFH-VHRGILGIGKRKTLPSLQSFLKNLPEKALILVLCGIS 131

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +  N+G+I R+A AF+  GII  K           + ++GA   +PY + +++ D +  +
Sbjct: 132 NHDNMGSIFRNAAAFASHGIIVDKTSCDPLYRKSIRVSAGAALKVPYTQNADINDIIAAL 191

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H   F    LS  +   L Q  K  + ALI G EG GL P   + +T++  + M     +
Sbjct: 192 HDENFHLYALSPSAPHTLRQAHKTKRTALIFGTEGDGLPPHVLQQSTAL-RIPMTDGFDS 250

Query: 263 LNVSNAAAVAL 273
           LNV+ A+ +AL
Sbjct: 251 LNVATASGIAL 261


>gi|166368966|ref|YP_001661239.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166091339|dbj|BAG06047.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 268

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 110/273 (40%), Gaps = 18/273 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S+++    ++R+ HR           +R   +     + G H +  AL          
Sbjct: 2   ISSVQNPLIKQIRKLHR-----------TRERQEQNLSLIEGTHLLETALALNCSLETVC 50

Query: 72  LATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
              K    + +      +    V+ V P+ +  +        G+    A      L  V 
Sbjct: 51  YTEKWQQRQAELAEKFQNQAKRVEIVSPEVLASLA-TTVNPDGVIATIA---RDHLHPVP 106

Query: 131 NSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            + L   +VL+ + DP N+G I+R+AVA    GI  +      ++  + +S++G     P
Sbjct: 107 QNPLQLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSP 166

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  S+L+  ++K  + G + I     + K   +        ++LG EG GL P+    A
Sbjct: 167 LVVESDLSALVKKYQAQGVKAIATLPTATKSHWEIDFTRPTLILLGNEGAGLSPQLAALA 226

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + + G +++LNV+ A AV LY  +   +
Sbjct: 227 DETVKIPLFGGVESLNVAIATAVILYEARRQLS 259


>gi|289548783|ref|YP_003473771.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
           14484]
 gi|289182400|gb|ADC89644.1| RNA methyltransferase, TrmH family, group 3 [Thermocrinis albus DSM
           14484]
          Length = 248

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 7/233 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L +YG + V  A+ +       L+A  +                ++ VP + I+++ G +
Sbjct: 4   LIIYGRNPVLEAIRSGRSVEKVLVAHDSHPPHQLVKLCKEKNIKLQKVPRKKIEELAGTK 63

Query: 109 AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
              QG+    +P+     + +          L+VLDH+ DP N+G +LR+       G +
Sbjct: 64  KT-QGVLAILSPVHYVKEEELFRKTLERGSFLLVLDHLTDPQNVGNLLRTCEVLGGVGAL 122

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K  S   +  + K++SGA+ H+   R+S+L  +L+     G   + +     K + Q 
Sbjct: 123 LPKDRSCPINQTVIKASSGAVFHLLLSRVSSLRRSLENFKRVGGWIVVVE-RGGKDIRQV 181

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                 AL+LG+EG+G+     E A  +  + M G I +LNVS+A A+A++ T
Sbjct: 182 DIPLPCALVLGSEGEGVSKSVMEIADLIVSIPMGGKITSLNVSSAGAIAIWET 234


>gi|121591825|ref|ZP_01679008.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121546309|gb|EAX56591.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
          Length = 213

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 10/211 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N  +     ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P   L    LD +       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + Q      +A+++GAEG G+R  T+ET  
Sbjct: 182 DIYQSKLTGSLAIVMGAEGDGMRRLTRETCD 212


>gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
 gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
 gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
 gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
          Length = 248

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 10/237 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  Q     + G H V  A+      + ++L  +     L+ D +      +  +     
Sbjct: 22  YRYQSLEYIVEGEHLVLEAIK--MNVVKEVLVKEGTTLHLNEDYHAVSN--IYLLKENLF 77

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           D+I   E   Q +              ++N   L++LD V DP N+G +LRSAVAF  DG
Sbjct: 78  DQIASTE-TPQPIMAVCEMKTM----NIKNQHRLLLLDRVQDPGNLGTLLRSAVAFGFDG 132

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I         +  + +S  GA+  +P +   NL +A+  +   G +  G S  + +PL 
Sbjct: 133 VILGDGCVDLYNEKVIRSTQGAIFKLPILN-QNLEEAVTSLKEQGVRIYGTSLQNGRPLN 191

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  +  K+A ILG EG G+  +          + M   I++LNVS A ++ +Y  + 
Sbjct: 192 EIEETMKMAFILGNEGSGVSKELLSLTDGNIFIEMSENIESLNVSIAGSIIMYRFRQ 248


>gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268]
 gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268]
          Length = 260

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 11/254 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K+++   +K++   +       G       L+ P+  + QL   ++    L         
Sbjct: 13  KEIRELTKKAKKRWEKGMFVAEGERL---LLDLPASSLLQLYVQEDYKGALPRGIE-KED 68

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +  +  + ++ I   E     L L   P             L ++L+++ DP N+G +
Sbjct: 69  SRICILSKKAMESISTTEHGQGILGLLRFPKKEK-----PKGDLFLILENIQDPGNLGTL 123

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+A A   + I  ++      S  + +S  G+L  +P+    +L    + + S G Q  
Sbjct: 124 FRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSLFRLPFSIEEDLFFLCESLKSAGVQVF 183

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            L  D KK   Q       A + G EG GL  +  + AT    + M G I++LNV+ +A+
Sbjct: 184 ALDLDGKKTHFQAAFQGPSAFLFGNEGNGLTKELSQCATEKLLIPMEGKIESLNVATSAS 243

Query: 271 VALYI--TQNHFAK 282
           + LY    Q  + K
Sbjct: 244 IVLYEAVRQRRYIK 257


>gi|156744301|ref|YP_001434430.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156235629|gb|ABU60412.1| RNA methyltransferase, TrmH family, group 3 [Roseiflexus
           castenholzii DSM 13941]
          Length = 248

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 13/242 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDWDANLPH--PFPVKTVPPQTIDKI 104
             LYG + V  AL    R   +LL +  A     L     L      PV+ +  + +D+ 
Sbjct: 3   DLLYGRNAVREALRARRRAFQRLLVSAGAQETGALGEIVRLAGEIGVPVERIDRRELDRR 62

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +  +A HQG+ALE        LD             LL++LDH+ DP N+G +LR+A   
Sbjct: 63  L-LDANHQGVALECGDYPYVDLDDCLTLAEERNEPALLLMLDHIQDPQNVGTLLRTAEVV 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS- 216
              G+I   R +   +  +  +++GA+EH+  + +SNL   ++++   G   +G+  D  
Sbjct: 122 GVHGVIIPGRRAAEITPAVVNASAGAVEHLRIVVVSNLAATIERVQHAGVWVVGVEDDER 181

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  ++   +  + L+LGAEG GL   T+E    +  L M G I +LNV+ A ++ LY  
Sbjct: 182 ARVFDEVDLDLPLTLVLGAEGSGLARLTRERCDFLVRLPMRGRIASLNVAVAGSIVLYHA 241

Query: 277 QN 278
             
Sbjct: 242 WR 243


>gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
 gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
          Length = 264

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 99/259 (38%), Gaps = 4/259 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS--AALNNPSRKIFQLLATKNALARL 81
            ++++  K++ S  Q+ ++  +     + G+ ++   AA+      + +    ++     
Sbjct: 6   SKDNKTIKRIISLRQR-KNRQKNGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDKNILD 64

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             D +     P         DK V      QG+    +              L + LD V
Sbjct: 65  LLDLDTVQSVPKYIAQDPVFDK-VDNTVNGQGVVAIVSKPTYDIESISIVDGLYITLDGV 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+AVA    GI   K      +    +S   AL  IP      LT     
Sbjct: 124 QDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYEDITLTLLHDM 183

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +      +   + +   P        +  L+LG EG G+ P+     T+   + M G ++
Sbjct: 184 VTESNMTSYVTALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNLCTNRIMIPMYGDME 243

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNVS AAA+ +Y  Q   
Sbjct: 244 SLNVSVAAALCMYKVQEQL 262


>gi|296270012|ref|YP_003652644.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296092799|gb|ADG88751.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 277

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 16/271 (5%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I ++K      +RR       +     + R  +        G   +  AL  P   + +
Sbjct: 3   EITNVKSPRVKAVRR-------LTKRAFRDRDRA----FLAEGPQAIREALRTPGVTV-E 50

Query: 71  LLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           L AT  A AR             PV     + + ++  +    QGL      +  P  +A
Sbjct: 51  LYATTEAEARHPDIVAAARDAGVPVHRTSGEVMAELT-QTVTPQGLVAVCRFVHVPLEEA 109

Query: 129 VR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           VR  ++L+ VL HV DP N G +LR+A A   D ++ T       +    ++++G+L H+
Sbjct: 110 VRPGARLVAVLAHVRDPGNAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHL 169

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P    +   + +++    G + +   +   + L++   +   A + G E  GL P+  E 
Sbjct: 170 PVSINARFPETVRQAREAGLRILAADASGARTLDEVDLSRPTAWVFGNEAWGLPPELLEL 229

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A  +  + + G  ++LN++ AAAV LY +  
Sbjct: 230 ADEVVRVPIYGRAESLNLATAAAVCLYASAR 260


>gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana]
 gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana]
 gi|330251842|gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis
           thaliana]
          Length = 589

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 56/327 (17%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRN-------HRDYKKMQSFNQKSRHTSQP------ENL 49
           +  +  + +   +K+       R+       +R++ + +S+ +K+   +        E  
Sbjct: 255 VEEEPDNTRWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGE 314

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDAN---------LPHPFPVKTV 96
            +YGV  V AAL+   R+ + L   +        R   D                 +K  
Sbjct: 315 VVYGVSPVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKET 374

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
               ++ +V     HQGL L+ +PL       L P         L + LD V DP N+GA
Sbjct: 375 SKHDLN-MVADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGA 433

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA  F   G++   + S   SAV++K+++G+LE +      N+   L+     G++ 
Sbjct: 434 IIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRV 493

Query: 210 IGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI------- 259
           +G S   K   L + +      L+LG EG GLRP  + + T +  +   MP         
Sbjct: 494 VGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESD 553

Query: 260 ------------IKALNVSNAAAVALY 274
                       +++LNVS AA + L+
Sbjct: 554 DAEGEGFRSFLAVESLNVSVAAGLFLH 580


>gi|77414383|ref|ZP_00790538.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
 gi|77159573|gb|EAO70729.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
          Length = 229

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A      +   +  T+ A+ RL      P    V  V    + ++
Sbjct: 7   RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRL----RKPEEAIV--VTDDVLKEL 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +   QG+  E A   +   D  +     +VL+ V DP N+G ++R+A A + D +  
Sbjct: 60  TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  H+P  R+  +   +    + G   I  + S+     +  
Sbjct: 117 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 175

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 176 PKYDHFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 226


>gi|295111122|emb|CBL27872.1| rRNA methylase, putative, group 3 [Synergistetes bacterium SGP1]
          Length = 305

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 10/250 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHPFPV--K 94
           ++S     P +   +G   V   + N   +  +LL   N     LD   +L     V  +
Sbjct: 46  RRSAERPLPPDDVCWGRQPVLDLVRNTPSRCTRLLIANNVRPPYLDELVDLARAGRVVYQ 105

Query: 95  TVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIG 148
            V P+ +DK+   E  HQG+A          L P L A+      L++VLDHV DPHN+G
Sbjct: 106 LVAPEALDKLCPGER-HQGVACRLTETVPVDLEPFLKALPAEAPALIVVLDHVEDPHNLG 164

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+RSA A      + ++R S      + K+++GA   +P I + N+   L ++ + GF 
Sbjct: 165 AIVRSAEAAGAAAAVYSRRRSALPGGTVVKTSAGASLRLPMIPVVNVVRTLAQLQAAGFW 224

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           T+GL   +   L ++    ++AL++GAEG+GL     E+   +  + + G + +LN S A
Sbjct: 225 TVGLEGRAGASLWEDGLPARLALVVGAEGEGLSRLVGESCDQLLRIPIQGGVGSLNASVA 284

Query: 269 AAVALYITQN 278
           AA  ++    
Sbjct: 285 AAFGMFEWSR 294


>gi|194335814|ref|YP_002017608.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308291|gb|ACF42991.1| RNA methyltransferase, TrmH family, group 3 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 248

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 11/240 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVP-PQTIDKIV-- 105
            +YG + V   L      I ++    N    +L            K V     ++K+   
Sbjct: 9   IVYGRNAVLELLQQKPESIEKIYFQFNTSHPKLKEIVITARRL--KLVSGKARLEKLSLI 66

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                HQG+    + +   +L+ V         LL+VL  ++DPHNIGAI+R+A A + D
Sbjct: 67  AGTTKHQGVCALISSVTYYSLEEVLATPRNTFPLLVVLQGLDDPHNIGAIIRTAEAVAAD 126

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++  +      +AV+ K+++GAL H+   ++ +L  AL+ +H    Q +    +++   
Sbjct: 127 AVVLVEGKGSPVNAVVHKASAGALSHMRICKVKSLVRALELLHQCNVQVLAADMEAELNY 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    A++LG EG G+ P+  +    +  + M G +++LNVS  A V LY      
Sbjct: 187 TDADMKKSTAIVLGMEGSGIAPEALQFCDHVVRIPMAGCVESLNVSVTAGVLLYEAMRQR 246


>gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
           10379]
 gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
           10379]
          Length = 251

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 114/250 (45%), Gaps = 12/250 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +Q   + +++  +     + G H V  AL+  ++ + +++ +++       D+
Sbjct: 6   SNKRIKDIQKLKE-NKNIKKYGRYLIEGKHLVEEALD--AKVVEEIIVSESFEEYNIVDS 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     V    +  I       QG+      ++   LD + N   +++LD + DP 
Sbjct: 63  FEGDLIK---VTDSVLKSISDT-ITSQGIIA-VCRIVKKELD-INNYSKVLILDKIQDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A AF+ D II  K  +      + +S  G+  HI      +L + + +MH  
Sbjct: 117 NLGTIIRTADAFNFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNIDLVELIDEMHE- 175

Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            F     S  + K +EQ      K+A++ G EG G+  +      ++  + MPG  ++LN
Sbjct: 176 -FNIFATSLKADKYIEQLDNITGKVAVVFGNEGAGVSEEILSKVNNLLKISMPGRAESLN 234

Query: 265 VSNAAAVALY 274
           VS AA + ++
Sbjct: 235 VSIAAGIVMH 244


>gi|296122016|ref|YP_003629794.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           limnophilus DSM 3776]
 gi|296014356|gb|ADG67595.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           limnophilus DSM 3776]
          Length = 271

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 108/260 (41%), Gaps = 28/260 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----------------------ANL 87
           +++G H VSA ++       +L    +  +  D                         NL
Sbjct: 12  WIWGRHLVSATIHAKYWIPLELHYDSHRFSPHDPLGDPIVGDFPLGDSIEEAHSTSLKNL 71

Query: 88  PHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVN 142
                ++ V      + +++  E  HQGLA           + +  +QL   L++LD + 
Sbjct: 72  CEAVGIQLVASTADQLSRLIRAED-HQGLAARMPEFPYADFEGLFQAQLPALLVILDGIQ 130

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GAI+R A A    GI+  ++     ++  A+S++GA+  +P  R+  L  A+ ++
Sbjct: 131 DSFNLGAIIRCAEALGAGGIVLPEKGQSGVNSQAARSSAGAVNFLPIYRVPALDRAIDQL 190

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            S G + +  +  S++ L   +    + LI+G EGKG+             + M G   +
Sbjct: 191 KSRGMKILAATEKSEQSLWNVVIPAPLCLIIGNEGKGVSSALLSACDIQVRIPMAGQTSS 250

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN + AA + L   Q    K
Sbjct: 251 LNAAVAAGILLAEIQRQSLK 270


>gi|167837026|ref|ZP_02463909.1| RNA methyltransferase, TrmH family protein [Burkholderia
           thailandensis MSMB43]
          Length = 262

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK+++S    +    +     L G+H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKSLAGSTHQQRRGGQALLEGLHLASAYLDAAGQPELCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A   +P L A R +   +VL
Sbjct: 61  HAEAREIVARIEPARVVTLPDALFGQLSNVVNGVGLLLLVA-RPAPALPA-RVADTSVVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVKRVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDIDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++           S   + +        +A + G EG G+  + ++ AT    +  PG
Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|313890877|ref|ZP_07824501.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120775|gb|EFR43890.1| RNA methyltransferase, TrmH family [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 255

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 106/231 (45%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A          +   ++ + R+  D        V  V P+ + ++
Sbjct: 33  RTDSYLIEGWHLFEEA-KKAQASFLHIFVVEDCVDRVATDDK------VIVVTPEVLKEL 85

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E      P L ++   +  ++L+ V DP N+G ++R+A A   DG++ 
Sbjct: 86  TDS-PTPQGIVAEVK-QEKPDLPSIGKGK-YLLLEDVQDPGNLGTMIRTADAAGFDGVLL 142

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  HIP  R +++    + M +     +  + SD     +Q 
Sbjct: 143 SEKSADVFNQKTLRSMQGSHYHIPVWR-TDVYAFCRTMKTKEMPILATTLSDQSIDYKQV 201

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  L++G EG+G+ PK  E ++ + H+ MPG  ++LNV+ AA + ++
Sbjct: 202 GTLTDFILVMGNEGQGISPKMAELSSQLVHISMPGQAESLNVAVAAGILIF 252


>gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
 gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
 gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
 gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
 gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
 gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
          Length = 264

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 4/259 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS--AALNNPSRKIFQLLATKNALARL 81
            ++++  K++ S  Q+ ++  +     + G+ ++   AA+      + +    ++     
Sbjct: 6   SKDNKTIKRIISLGQR-KNRQKYGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDKHVLD 64

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             D +     P         DK V      QG+    +           +  L + LD V
Sbjct: 65  LLDLDTVQFVPKFIAQDPIFDK-VDNTVNGQGVVAIVSKPKYDMESIHIDDGLYITLDGV 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+AVA    GI   K      +    +S   AL  IP      L+     
Sbjct: 124 QDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYEDITLSLLHDM 183

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +      T   + +   P        +  L+LG EG G+ P+     T+   + M G ++
Sbjct: 184 VTESNMTTYVTALEHSNPYHTVRYAKRTMLVLGNEGNGVTPEVMNLCTNRIMIPMYGDME 243

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNVS AAA+ +Y  Q   
Sbjct: 244 SLNVSVAAALCMYKVQEQL 262


>gi|116495156|ref|YP_806890.1| rRNA methylase [Lactobacillus casei ATCC 334]
 gi|116105306|gb|ABJ70448.1| rRNA methylase [Lactobacillus casei ATCC 334]
          Length = 253

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 28/275 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K     K                   H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     + + AT+    +   D  L   +   T   +++ + +      QG+     P
Sbjct: 42  LASGQTP-YDIYATE----KYVEDRALKPFYEKITQISESVSEHLSDTQTPQGIFA-VMP 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +  L    + Q L+ LD + DP N+G ++R+A A     ++     + +    + ++ 
Sbjct: 96  RRAEQLPEPLSGQFLL-LDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKG 239
            G+  H+  +    L   ++ +H  G    G   + K K       +++ ALI+G EG G
Sbjct: 155 QGSQFHVRIVSAK-LMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNG 213

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   +   +  ++ + G  ++LNV+ AAAV ++
Sbjct: 214 MDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMF 248


>gi|317499573|ref|ZP_07957836.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893122|gb|EFV15341.1| SpoU rRNA methylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 273

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 98/229 (42%), Gaps = 10/229 (4%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           A       I  L+  ++   +           PV T     + ++ G       L     
Sbjct: 47  AFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVLKQLTGFGLTRGMLCAMRR 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L        +++ +++L++V +P N+GAI RSA A + D I+ +K  S        + 
Sbjct: 107 KPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRV 166

Query: 180 ASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALIL 233
           + G +  IP+  + +     D + ++   G++ + ++  D    ++ E     DK+A+IL
Sbjct: 167 SMGTVFQIPWTFLGDDTWPADGMYRLKELGYKNVAMALTDRSVSIDDEALMSEDKLAIIL 226

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G EG GL  +T +       + M   + +LNV+ A+AVA +      AK
Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFW----QLAK 271


>gi|315652177|ref|ZP_07905174.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485572|gb|EFU75957.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 260

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 99/258 (38%), Gaps = 8/258 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K++ +  +KS    +     + G+            +I ++  +++         
Sbjct: 6   SNKKIKELLALVKKSSVRKKQNAYIVEGIRMFKEL---EPEEILEVFVSESFENENKGLL 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVN 142
              +P   +TV  +  D I       QG+              ++ +      ++LD + 
Sbjct: 63  KNIYP-EYETVSDRIFDSISDT-KTPQGVLAVAKRKEYTIDSILKEAGRPFSFLILDSLQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R+A       II  +      +  + +S  G++  +P+I + +L   + K+
Sbjct: 121 DPGNLGTLVRAAEGAGITCIIMNENTVDIYNPKVIRSTMGSIFRVPFIYVKDLKKVIDKL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            S   +    S +     ++      IA ++G E  G+     +       + M G +++
Sbjct: 181 QSKAVEIFASSLEGATEYDKPDYKKDIAFVIGNEAAGISKDILDIVEKKIKIPMLGEVES 240

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + A ++ +Y      
Sbjct: 241 LNAAVAGSILMYEAARQR 258


>gi|238810259|dbj|BAH70049.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 244

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 9/233 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E L++ G ++V  AL   +  I  +      LA+            ++            
Sbjct: 15  EKLYVCGRNSVEDALK-VNLPIETIYVNSFQLAQKLKQITKAK---IEMKDNSFFANY-- 68

Query: 107 KEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +   HQG+           L+ ++  N + ++VLDH+ DPHN+GAI+R+A       +I 
Sbjct: 69  RNDNHQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLII 128

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223
           +K  S + ++ + K +SG   ++  I++++++  L K+  W +     + D + + + Q 
Sbjct: 129 SKERSANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQV 188

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             N    L++G EG G+   T   A  + ++   G ++++NVS A  + LY  
Sbjct: 189 TFNKPSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYEL 241


>gi|291535725|emb|CBL08837.1| rRNA methylases [Roseburia intestinalis M50/1]
          Length = 294

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 7/212 (3%)

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           L +++   +        H  PV     + + KI G +     L     P L       +N
Sbjct: 79  LQSRDLTQKSLVYREDEHVIPVYVAEVEVLAKITGYQLTRGMLCAMYRPTLPSVEQLCKN 138

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++ + +L++V +P N+GAI RSA A   D ++ T   +       ++ + G +  IP+  
Sbjct: 139 ARRVAILENVVNPTNVGAIFRSAAALGMDAVLLTPACADPLYRRASRVSMGTVFQIPWTY 198

Query: 192 IS----NLTDALQKMHSWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKT 244
                     A+  +H  G++T  ++  D    ++ E  +  +K+A++LG EG GL   T
Sbjct: 199 FDKNACWPDGAMDVLHKLGYKTAAMALRDDSVSIDDEKMMSEEKLAIVLGTEGDGLADHT 258

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    + M   + +LNV+ A+AVA +  
Sbjct: 259 IADCDYTVKIPMTHGVDSLNVAAASAVAFWQL 290


>gi|225857547|ref|YP_002739058.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
 gi|225724882|gb|ACO20734.1| possible rRNA/tRNA methylase [Streptococcus pneumoniae P1031]
          Length = 246

 Score =  201 bits (513), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLRQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A          V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSPA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|29376897|ref|NP_816051.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227553934|ref|ZP_03983981.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229545177|ref|ZP_04433902.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|229549425|ref|ZP_04438150.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|255972129|ref|ZP_05422715.1| predicted protein [Enterococcus faecalis T1]
 gi|256763096|ref|ZP_05503676.1| rRNA methylase [Enterococcus faecalis T3]
 gi|256853763|ref|ZP_05559128.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256961303|ref|ZP_05565474.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256963570|ref|ZP_05567741.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|257079635|ref|ZP_05573996.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|257082019|ref|ZP_05576380.1| rRNA methylase [Enterococcus faecalis E1Sol]
 gi|257084570|ref|ZP_05578931.1| rRNA methylase [Enterococcus faecalis Fly1]
 gi|293383588|ref|ZP_06629498.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
 gi|293387299|ref|ZP_06631856.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
 gi|294780915|ref|ZP_06746269.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
 gi|307270842|ref|ZP_07552129.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4248]
 gi|307271508|ref|ZP_07552780.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0855]
 gi|307287718|ref|ZP_07567761.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0109]
 gi|312906138|ref|ZP_07765150.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 512]
 gi|312909483|ref|ZP_07768338.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 516]
 gi|312953482|ref|ZP_07772322.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0102]
 gi|29344362|gb|AAO82121.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
 gi|227176920|gb|EEI57892.1| RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229305662|gb|EEN71658.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229309722|gb|EEN75709.1| RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|255963147|gb|EET95623.1| predicted protein [Enterococcus faecalis T1]
 gi|256684347|gb|EEU24042.1| rRNA methylase [Enterococcus faecalis T3]
 gi|256710706|gb|EEU25749.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256951799|gb|EEU68431.1| rRNA methylase [Enterococcus faecalis Merz96]
 gi|256954066|gb|EEU70698.1| rRNA methylase [Enterococcus faecalis HIP11704]
 gi|256987665|gb|EEU74967.1| rRNA methylase [Enterococcus faecalis JH1]
 gi|256990049|gb|EEU77351.1| rRNA methylase [Enterococcus faecalis E1Sol]
 gi|256992600|gb|EEU79902.1| rRNA methylase [Enterococcus faecalis Fly1]
 gi|291079100|gb|EFE16464.1| RNA methyltransferase, TrmH family [Enterococcus faecalis R712]
 gi|291083336|gb|EFE20299.1| RNA methyltransferase, TrmH family [Enterococcus faecalis S613]
 gi|294452041|gb|EFG20489.1| RNA methyltransferase, TrmH family [Enterococcus faecalis PC1.1]
 gi|306501456|gb|EFM70759.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0109]
 gi|306511780|gb|EFM80778.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0855]
 gi|306512755|gb|EFM81400.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4248]
 gi|310627784|gb|EFQ11067.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 512]
 gi|310628691|gb|EFQ11974.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0102]
 gi|311290156|gb|EFQ68712.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis DAPTO 516]
 gi|315030220|gb|EFT42152.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX4000]
 gi|315144757|gb|EFT88773.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX2141]
 gi|315152149|gb|EFT96165.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0031]
 gi|315159088|gb|EFU03105.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0312]
 gi|315161681|gb|EFU05698.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0645]
 gi|315164817|gb|EFU08834.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1302]
 gi|315574365|gb|EFU86556.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0309B]
 gi|315580160|gb|EFU92351.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0309A]
 gi|323481392|gb|ADX80831.1| SpoU type rRNA methylase [Enterococcus faecalis 62]
 gi|327535688|gb|AEA94522.1| TrmH family RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329572242|gb|EGG53902.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TX1467]
          Length = 258

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  K+ ++   K  H  K R                    +     + G H V  A
Sbjct: 1   MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +  +    QG+      
Sbjct: 42  VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +    ++      ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 99  LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++   LT+ +Q     G    G    ++     ++   +  ALILG EG G
Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|149012438|ref|ZP_01833469.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763494|gb|EDK70430.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP19-BS75]
          Length = 246

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 33/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLRQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A          V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245


>gi|191638665|ref|YP_001987831.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227534828|ref|ZP_03964877.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239632038|ref|ZP_04675069.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066720|ref|YP_003788743.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|190712967|emb|CAQ66973.1| 23S rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227187584|gb|EEI67651.1| 23S rRNA methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239526503|gb|EEQ65504.1| rRNA methylase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439127|gb|ADK18893.1| rRNA methylase [Lactobacillus casei str. Zhang]
 gi|327382706|gb|AEA54182.1| RNA methyltransferase, TrmH family [Lactobacillus casei LC2W]
 gi|327385893|gb|AEA57367.1| RNA methyltransferase, TrmH family [Lactobacillus casei BD-II]
          Length = 253

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 28/275 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K     K                   H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     + + AT+    +   D  L   +   T   +++ + +      QG+     P
Sbjct: 42  LASGQTP-YDIYATE----KYVEDRALKPFYDKITQISESVSEHLSDTQTPQGIFA-VMP 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +  L    + Q L+ LD + DP N+G ++R+A A     ++     + +    + ++ 
Sbjct: 96  RRAEQLPEPLSGQFLL-LDAIQDPGNVGTLVRTADAAGIQTVVFGNGTADAFGPKVLRAM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKG 239
            G+  H+  +    L   ++ +H  G    G   + K K       +++ ALI+G EG G
Sbjct: 155 QGSQFHVRIVSAK-LMPIIKALHRGGIPVYGSELNEKAKSYHSIQPSERFALIVGNEGNG 213

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   +   +  ++ + G  ++LNV+ AAAV ++
Sbjct: 214 MDPVLLQNTDTNLYIPIRGKAESLNVAVAAAVMMF 248


>gi|312899832|ref|ZP_07759151.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0470]
 gi|311293082|gb|EFQ71638.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0470]
 gi|315170301|gb|EFU14318.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1342]
          Length = 258

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  K+ ++   K  H  K R                    +     + G H V  A
Sbjct: 1   MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +  +    QG+      
Sbjct: 42  VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +    ++      ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 99  LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++   LT+ +Q     G    G    ++     ++   +  ALILG EG G
Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|226306779|ref|YP_002766739.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226185896|dbj|BAH34000.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 276

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 11/250 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNP-----SRKIFQLLATKNALARLD--WDANLPHPF 91
           ++    +     + G ++V+  LN       +R +  L  T++A  R     D  L    
Sbjct: 19  RTAERRKAGRFLVEGENSVTELLNGALSNGEARPVHDLFYTEDAAERYQHVIDRALTAGV 78

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAI 150
            V  V  + I  +        GL   +  L  P   AV + ++LL V   VN+P N G +
Sbjct: 79  RVALVTDRAIKALSDTVTPP-GLVAVSDLLDVPLSAAVHQETRLLAVPVEVNEPGNAGTV 137

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A A   D  I         +  + +S++G+L H+P +R  +    ++++ + G Q +
Sbjct: 138 IRIADAVGADAAILAGDSVDPHNGKVVRSSAGSLFHLPVVRDRDTVSVIEQIRAAGIQIL 197

Query: 211 GLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             ++D +  L++     +   A + G E  GL P     A     + + G  ++LN++ A
Sbjct: 198 ATAADGEVDLDEADELLSKPTAWLFGNEAHGLDPAIAAQADHRVRIPIHGRAESLNLATA 257

Query: 269 AAVALYITQN 278
           AA+ LY +  
Sbjct: 258 AAICLYASAR 267


>gi|331265656|ref|YP_004325286.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
 gi|326682328|emb|CBY99945.1| rRNA/tRNA methylase, putative [Streptococcus oralis Uo5]
          Length = 246

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 108/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L      P       V  + +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALESYRDQL---VAFPQTI---WVSEEILRDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDLHQGK--FLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  R+  L   +++        +  + S   K   +    +  AL++G EG+G
Sbjct: 150 QGSHFHLPIYRLP-LASFVEEAKKSYLPILATTLSRESKDYRELSPLENFALVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISSVMAESADQLVHISMKGRAESLNVAVAAGILMF 243


>gi|240850924|ref|YP_002972324.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
 gi|240268047|gb|ACS51635.1| 23S ribosomal RNA methyltransferase [Bartonella grahamii as4aup]
          Length = 269

 Score =  201 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 9/262 (3%)

Query: 19  HYAKLRRNHRDYKKMQSF-NQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKN 76
           H   +  N  D  +++++ N + +     ++ F+  G  T+SA L++       LL   N
Sbjct: 2   HLNIITINKTDDPRLKAYHNIREKDLVGRQHQFIAEGKVTLSALLHSKDFSAISLLIVAN 61

Query: 77  ALARLDWDANLPHPF-PVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRN 131
            L+ L        P  P+  VP + +D I G   VH+G+      +T P L   L  +  
Sbjct: 62  RLSGLLPLLEKTQPLCPIYCVPQKVMDNITGFH-VHRGVLGIGKRKTLPSLQSFLQHLPE 120

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L++VL  +++  N+G+I R+A AF+ +GII  K           + ++GA   +PY +
Sbjct: 121 KALILVLCGISNHDNMGSIFRNAAAFASNGIIVDKTSCDPLYRKSIRVSAGAALKVPYTQ 180

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +++ D +  +    F    LS  +   L+Q  K  ++ALI G EG GL     + +   
Sbjct: 181 NADINDIIAALKDKNFHLYALSPSASHTLKQANKTKRMALIFGTEGDGLPTHILQQS-KT 239

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             + M     +LNV+ A+ +AL
Sbjct: 240 LRIPMTNGFDSLNVATASGIAL 261


>gi|86609412|ref|YP_478174.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557954|gb|ABD02911.1| RNA methyltransferase, TrmH family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 270

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 112/275 (40%), Gaps = 18/275 (6%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           SE + S K+    KLR+ HR           S+   +     + G H +  AL      +
Sbjct: 3   SELLTSPKNPWIRKLRQLHR-----------SKGRREQGAFLVEGSHLIEEALRVGW-PL 50

Query: 69  FQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTL 126
             L  T +  +R     A+LP     + V  + +  +   E+    +A+  +  + SP L
Sbjct: 51  QALCYTPDWASRHPHLLADLPKGLRRQPVSSEVMAALCTTESPEGAVAVAVSWQISSPPL 110

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +R   L +V++ + DP N+G+++R   A   DG+  +      E+  + ++++G    
Sbjct: 111 SKLR---LGLVVETLQDPGNLGSLIRVVAAAGADGLWLSADSVDPENPKVLRASAGQWFR 167

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            P   + +L   +Q     G Q +  +   +      +        +LG EG GLR  T 
Sbjct: 168 RPPQVVPDLAAWIQSCRCHGIQVLAATLSPTANCYWDQDLTRPTLFLLGNEGAGLREATI 227

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A +   + M   +++LNV+    + LY      
Sbjct: 228 QQADAQVRIPMAEGVESLNVAMTGGLLLYEALRQR 262


>gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus
           leucogenys]
          Length = 353

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 28/259 (10%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103
             L+G+     AL    R + +LL            A L         PV     Q +D 
Sbjct: 50  ELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDT 109

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +   + VHQG+ +E +PL          +       QL +VLD + DP N GA+LRSA  
Sbjct: 110 MCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHF 168

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-- 214
              D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+   G     
Sbjct: 169 LGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCP 228

Query: 215 ------DSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIK 261
                  S+ P+    + + +    L+LG EG GL  + Q +   +  +     +P  ++
Sbjct: 229 SAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLE 288

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNVS AA + L+   N  
Sbjct: 289 SLNVSVAAGILLHSICNQR 307


>gi|311742381|ref|ZP_07716190.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314009|gb|EFQ83917.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 274

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 100/257 (38%), Gaps = 11/257 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP----SRKIFQLLATKNALARLDWDAN 86
           K  +    ++    Q E     G   V  AL +        + ++ AT  A  + D    
Sbjct: 16  KHARRLATRAFRAEQRE-FLAEGPQAVREALAHGGADHRGTVIEVFATSEATDQHDDLVT 74

Query: 87  LPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVND 143
                 V    V P  +D +    A  QG+    A +  P    + R+   L+V   + D
Sbjct: 75  AARRDEVVWHVVAPDVLDALTDTVA-PQGVVARCAMVDRPLKALLDRSPTFLVVCADIRD 133

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA++R A A   DG++ T       +    ++  G+L H+P +   ++   L  + 
Sbjct: 134 PGNAGAVIRCADAAGADGVVFTGDSVDPYNPKSVRATVGSLFHLPLVIDRDVEGTLAALQ 193

Query: 204 SWGFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           S G Q +         L           A ++G E  GL   T+  A  +  + + G  +
Sbjct: 194 SAGLQVLAADGAGDVDLFDPSLDLAAPTAWLMGNEAWGLPEATRGRADHVVAVPIFGRAE 253

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++ AAAV LY T  
Sbjct: 254 SLNLATAAAVCLYTTAR 270


>gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862]
          Length = 256

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 17/271 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I S+++S         + ++K+Q+  +K R  S+     L G H V  A+ +   K+ 
Sbjct: 2   ETITSVQNSRV-------KSWQKLQT--KKGRQASK--TYLLDGWHLVQEAIQHEG-KLH 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            ++AT   LA  +    LP   PV  +      K+       QG+  E +   +      
Sbjct: 50  AIMATPEQLA--EHQEALPLGVPVFEITTDIAKKLSDL-VTPQGVFAEVSLPTATREPRF 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +    + LD + DP NIG ++R+A A    G++         S    ++  G+  H+  
Sbjct: 107 IHDGAWLFLDAIQDPGNIGTMVRTADAAGFAGVVFGNGSVDPYSPKALRAMQGSQFHMTL 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +L D             G   D     L       + ALI+G EG+G+     +  
Sbjct: 167 -TTGDLQDWTAAFTQNDINVYGTQLDPEAADLFTIPAQSQFALIMGNEGQGMAADLAKMT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           T   ++ + G  ++LNV+ AA +A++  +  
Sbjct: 226 TKNLYIPLTGDAESLNVAVAAGIAMFALKAR 256


>gi|303254103|ref|ZP_07340218.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
 gi|303262494|ref|ZP_07348436.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|303266013|ref|ZP_07351908.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
 gi|303268055|ref|ZP_07353856.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
 gi|302598936|gb|EFL65967.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
 gi|302636394|gb|EFL66887.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS292]
 gi|302642415|gb|EFL72761.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
 gi|302644454|gb|EFL74706.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
          Length = 246

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 107/277 (38%), Gaps = 33/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLRQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A          V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D   N    + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADL--NQGKFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 245


>gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 261

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 11/262 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALA 79
            +++   K++++  Q+ R        F+ G+  V+ A+   +  I QL+      ++  A
Sbjct: 4   SKHNPAIKQIRALRQR-REREATGLFFIEGIRNVTEAVQAQA-PIEQLIVAPDLLRSQFA 61

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVL 138
           +   +       P+  V  +    +  K+   QGLA       +   D   +  L  + L
Sbjct: 62  QDLVEQQRQQAIPILEVSGEVFASLSSKDG-PQGLAAVVRQQWASLADVRPDQGLCWIAL 120

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + ++DP N+G ILR+  A    G+I     +        +++ G L     ++ +   + 
Sbjct: 121 NAISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGRASMGTLFSQRLVKAT-WAEF 179

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            Q     GF  +G +  +            + L++G+E +GL  + Q    ++  + M G
Sbjct: 180 SQWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRG 239

Query: 259 IIKALNVSNAAAVALYI--TQN 278
              +LN++ A  V LY    Q 
Sbjct: 240 QADSLNLAVATGVLLYEILAQR 261


>gi|77412543|ref|ZP_00788838.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           CJB111]
 gi|77161411|gb|EAO72427.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
           CJB111]
          Length = 247

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A      +   +  T+ A+ RL              V    + ++
Sbjct: 25  RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRLRKPERAI------VVTDDILKEL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +   QG+  E A   +   D  +     +VL+ V DP N+G ++R+A A + D +  
Sbjct: 78  TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 134

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  H+P  R+  +   +    + G   I  + S+     +  
Sbjct: 135 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 193

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 194 PKYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 244


>gi|77405800|ref|ZP_00782884.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
 gi|77408463|ref|ZP_00785201.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
 gi|77172905|gb|EAO76036.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
 gi|77175587|gb|EAO78372.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
          Length = 229

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A      +   +  T+ A+ RL              V    + ++
Sbjct: 7   RKSSYLIEGWHLFEEA-EKYGAQFLNIFVTETAIDRLRKPERAI------VVTDDVLKEL 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +   QG+  E A   +   D  +     +VL+ V DP N+G ++R+A A + D +  
Sbjct: 60  TDSQ-TPQGIVAEIAFQETRWTDIKKGR--FLVLEDVQDPGNLGTMVRTADAANFDAVFL 116

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   +    +S  G+  H+P  R+  +   +    + G   I  + S+     +  
Sbjct: 117 SQKSADLYNQKTLRSMQGSHFHLPVFRVE-IEQFVNFCKAEGITMIATTLSEQSVNYKNL 175

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K D  ALI+G EG+G+     E A  +AH+ MPG  ++LNV+ AA V ++
Sbjct: 176 PKYDYFALIMGNEGQGISKTMTEEADVLAHIEMPGQAESLNVAVAAGVVIF 226


>gi|258508716|ref|YP_003171467.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148643|emb|CAR87616.1| rRNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|259650023|dbj|BAI42185.1| rRNA methylase [Lactobacillus rhamnosus GG]
          Length = 253

 Score =  201 bits (512), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 107/275 (38%), Gaps = 28/275 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K     K                   H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     + + AT+     +D  A  P    +  +     + +   E   QG+     P
Sbjct: 42  LASGQTP-YDIYATE---KYVDDRALKPFYDKITQISESVSEHLSDTE-TPQGIFA-VMP 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +  L  + + Q L+ LD + DP N+G ++R+A A     +I     + +    + ++ 
Sbjct: 96  RQAGQLPDLLSGQFLL-LDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+  +    L   ++ +   G    G    D  K       + +  L++G EG G
Sbjct: 155 QGSQFHVRIVSAK-LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNG 213

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   +   +  ++ + G  ++LNV+ AAA+ ++
Sbjct: 214 MDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMF 248


>gi|254719617|ref|ZP_05181428.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13]
 gi|265984627|ref|ZP_06097362.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|264663219|gb|EEZ33480.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
          Length = 276

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 22/289 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116
           L  ++   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
              ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G EG+GL  +  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 231 GTEGEGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL----SRFSK 274


>gi|81300008|ref|YP_400216.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 7942]
 gi|81168889|gb|ABB57229.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           7942]
          Length = 234

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 92/233 (39%), Gaps = 5/233 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGK 107
             L G H +  A+      + Q+ AT     +            P +TV    +  +   
Sbjct: 4   FLLEGTHLLQEAIATNW-PLLQVCATPAWQNQHPQLWQQAIQAAPEQTVSDDLLAYLC-T 61

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                G+    A    P      ++ LL+ ++ + DP N+G I+R+A A   DG+  T  
Sbjct: 62  TVNPDGVVAIAA--RQPQRQPPTSASLLIAVETLQDPGNLGTIIRTAAAAGADGLWLTAD 119

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
               +   + ++++G    +P    ++L   L+     G+Q +     +   L Q     
Sbjct: 120 GVDPDHPKVLRASAGQWFRLPIAIATDLGQTLRSWQQQGYQIVSTLPRATTTLWQADLTR 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L+LG EG GL P     A S   +     +++LNV+ AAA+ LY  +   
Sbjct: 180 PTVLLLGNEGAGLSPDLAAIADSAVTIPQAAGVESLNVAIAAALLLYEARRQR 232


>gi|309798502|ref|ZP_07692784.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis
           SK1302]
 gi|308117874|gb|EFO55268.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus infantis
           SK1302]
          Length = 222

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 9/207 (4%)

Query: 48  NLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ AL  N   K++     +        +        +     +++ ++  
Sbjct: 15  NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 73

Query: 107 KEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + AVHQG  L  +      L+ +        + LL++LD + DPHN+G+ILR+A A +  
Sbjct: 74  EGAVHQGFVLRVSEFAYTELEQILAQTRQEENPLLLILDGLTDPHNLGSILRTADATNVS 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+I  K  +   + V+AK+A+GA+EH+P  R++NL+  L K+   GF T G   +   P 
Sbjct: 134 GVIIPKHRAVGVTPVVAKTATGAIEHVPIARVTNLSQTLDKLKDEGFWTFGTDMNG-TPC 192

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQET 247
            +     KIALI+G EGKG+    +  
Sbjct: 193 HKWNTKGKIALIIGNEGKGISSNIKNK 219


>gi|315150158|gb|EFT94174.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0012]
          Length = 258

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  K+ ++   K  H  K R                    +     + G H V  A
Sbjct: 1   MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +  +    QG+      
Sbjct: 42  VKANADVQWILFNQRGQQEWRTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +    ++      ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 99  LETQQEKSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++   LT+ +Q     G    G    ++     ++   +  ALILG EG G
Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|253580061|ref|ZP_04857328.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848580|gb|EES76543.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 272

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 7/242 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P          +  ALN   + I  L+  K+               PV T   + +
Sbjct: 28  YEPEPGIFIAESPKVIERALNAGYQPISFLVEHKDLEGEAQEILKQYPDVPVYTAEYELL 87

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+ G       L       L    +  RN+  + VL++V +P NIGAI RSA A   D 
Sbjct: 88  VKLTGFALTRGMLCAMRRNSLPSVEEICRNASRIAVLENVVNPTNIGAIFRSAAALHMDA 147

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKMHSWGFQTIGLSS--D 215
           ++ T   S       A+ + G +  IP+           D +Q + + GF+T  ++   D
Sbjct: 148 VLLTGGCSDPLYRRAARVSMGTVFQIPWTYFDKKTVWPQDGMQILQNLGFKTAAMALRDD 207

Query: 216 SKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           S    ++ +++ +K+A+ILG EG GL  +T         + M   + +LNV+ A+AVA +
Sbjct: 208 SVGIDDKALRSEEKLAVILGTEGDGLASQTIADCDYTVKIPMSHGVDSLNVAAASAVAFW 267

Query: 275 IT 276
             
Sbjct: 268 EL 269


>gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525007|gb|EEF94112.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
           15897]
          Length = 242

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 19/249 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N++  K +     K +   +     + G H V  A       +            +  D 
Sbjct: 6   NNKTIKDLVKLKNK-KTRDEKGLFLVDGFHMVEEAKKAGLCDLV-----------ISTDE 53

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +L     V  V    ++K+       Q +            + +++   +++LD V DP 
Sbjct: 54  SLEGQDKVLVVSDSVMEKL-SYTKTPQPIMAVCHKKD----NILKHYDRVLILDGVQDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILRSA+AF    I+ +       +    +S  GA+ H+  +R  +L   + ++   
Sbjct: 109 NLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFHLDIVR-DDLHHVIPELQKL 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + I  S  +   ++     DK+A ++G EG G+R +T   + +  ++ +   +++LNV
Sbjct: 168 GVRVIATSLHNASSIDDIKSTDKMAFVMGNEGNGVRDETIAMSDASLYIPID-TMESLNV 226

Query: 266 SNAAAVALY 274
             AA + +Y
Sbjct: 227 GVAAGIVMY 235


>gi|41406918|ref|NP_959754.1| hypothetical protein MAP0820 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395268|gb|AAS03137.1| hypothetical protein MAP_0820 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 289

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 6/253 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +  R    LL T+  LA L  D     
Sbjct: 22  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLA-GV 79

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P P        + ++VG       LA           + +  S+ + VL+ VND  N+GA
Sbjct: 80  PVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENLGA 139

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A     D +I     +        + + G    +PY R ++    L+ +   GF+ 
Sbjct: 140 IFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKENGFRL 199

Query: 210 IGLSSDSKKP-LEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + ++       L + +   + D++A+++GAEG GL P     +     + M     +LNV
Sbjct: 200 LAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNV 259

Query: 266 SNAAAVALYITQN 278
           + AAA+A Y    
Sbjct: 260 ATAAALAFYERSR 272


>gi|325297905|ref|YP_004257822.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324317458|gb|ADY35349.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 268

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 99/250 (39%), Gaps = 8/250 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R   +           +  AL+     +  L   K+               P
Sbjct: 23  LTEAQLRNRLEPEKGVFIAESPKVIRVALDAGYEPLALLCERKHLAGDAADILARCPDIP 82

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + + ++ G       L     P +    +    ++ ++V+  V D  NIGAI R
Sbjct: 83  VYTGGRELLARLTGYTLTRGVLCAMRRPPVKSVEEVCGGARRIVVIHGVTDTTNIGAIFR 142

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQTIG 211
           SA A   DG++ T       +    + + G++  IP+       DA L  +   GF+T  
Sbjct: 143 SAAALGIDGVLLTPDSCDPLNRRAVRVSMGSVFLIPWT----WADAPLAALRRLGFRTAA 198

Query: 212 LS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L+ SD   PL+        ++AL++G EG GL   T   A     + M   + +LNV+ A
Sbjct: 199 LALSDDSVPLDTPALKQEPRLALVMGTEGDGLPHATIAEADYTVRIPMAHGVDSLNVAAA 258

Query: 269 AAVALYITQN 278
           +AVA +  + 
Sbjct: 259 SAVAFWELRR 268


>gi|294852903|ref|ZP_06793576.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|294821492|gb|EFG38491.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 276

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 22/289 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116
           L  ++   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
              ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G EG+GL  +  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 231 GTEGEGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL----SRFSK 274


>gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 264

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 4/259 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS--AALNNPSRKIFQLLATKNALARL 81
            ++++  K + +  Q+ ++  +     + G+ ++   AA+      + +    ++     
Sbjct: 6   SKDNKTIKHIIALGQR-KNRQKSGEYIVEGIRSIRDIAAMGAVKTVVIRESKAQDKNVLD 64

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               +         V     DKI       QG+    +              L + LD V
Sbjct: 65  LLTLDSAQSAHTYIVQDPVFDKI-DNTVNGQGVVAIVSKPKHNIESVSIEDGLYITLDGV 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+AVA    GI   K      +    +S   AL  IP      L+     
Sbjct: 124 QDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRSTMSALHKIPLYEDITLSMLHDI 183

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +      T   + ++ +P        +  L+LG EG G+ P+     T+   + M G ++
Sbjct: 184 VAESNMTTYVTALENSEPYHSVNYAKRTMLVLGNEGNGVTPEVMNLCTNRIMIPMYGDME 243

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNVS AAA+ +Y  Q   
Sbjct: 244 SLNVSVAAALCMYKVQEQL 262


>gi|254773895|ref|ZP_05215411.1| SpoU rRNA methylase family protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 289

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 6/253 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +  R    LL T+  LA L  D     
Sbjct: 22  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLA-GV 79

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P P        + ++VG       LA           + +  S+ + VL+ VND  N+GA
Sbjct: 80  PVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENLGA 139

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A     D +I     +        + + G    +PY R ++    L+ +   GF+ 
Sbjct: 140 IFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGFRL 199

Query: 210 IGLSSDSKKP-LEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + ++       L + +   + D++A+++GAEG GL P     +     + M     +LNV
Sbjct: 200 LAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNV 259

Query: 266 SNAAAVALYITQN 278
           + AAA+A Y    
Sbjct: 260 ATAAALAFYERSR 272


>gi|319790011|ref|YP_004151644.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
 gi|317114513|gb|ADU97003.1| RNA methyltransferase, TrmH family, group 3 [Thermovibrio
           ammonificans HB-1]
          Length = 236

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 9/239 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGK 107
           + +YG + V  A+ +  R I ++          ++ + L       +      +D++ G 
Sbjct: 1   MVIYGRNAVEEAVRSG-RNIEKVYLLHGKFFEPEFLSLLQERGVRFQWAKRPQLDRLAGT 59

Query: 108 EAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              HQG+    +P+   TL     + V  +     L+ + +P N+GAI RS   F   G+
Sbjct: 60  GK-HQGVVAIISPIEYATLQELVEETVNRNSFFFALNGITEPQNLGAIARSVELFGGVGL 118

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +  +R S   + V  K+++GAL H+  +R+  L + L      G     L +  +   + 
Sbjct: 119 LLPQRGSAPINEVAVKASAGALLHLKVVRVDFLEEGLLAFKESGGNVYALETGGRDIRDS 178

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           ++K   +A ILG+EGKG+  +  E A     +   G + +LNVS AA +A +      A
Sbjct: 179 QLKR-PLAFILGSEGKGIDAELVELADLTVTIPTVGKLPSLNVSVAAGIAAWEIFRRGA 236


>gi|315223129|ref|ZP_07864997.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
           anginosus F0211]
 gi|315187818|gb|EFU21565.1| RNA 2'-O ribose methyltransferase substrate binding [Streptococcus
           anginosus F0211]
          Length = 246

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 105/277 (37%), Gaps = 33/277 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+I+ K +  + + K     K R++                     +  + G H    A
Sbjct: 1   MNIITSKANNVVKNTKKLLQKKYRKD---------------------SYLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +         +N      +   +     V  V    +  +       QG+  E A 
Sbjct: 40  VQAQAEF-------RNIFVLEIFFDKVKDFSQVHVVTADILADLADS-KTPQGIVAEIAF 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                   ++   L   L+ V DP N+G I+R+A A   DG+  ++  +   +    +S 
Sbjct: 92  EKQSAPSFLKGKYLF--LEDVQDPGNVGTIIRTADAAGYDGVFISQHSADIYNLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKG 239
            G+  H+P  R+    D L+         +  +        +E+      AL+LG EG+G
Sbjct: 150 QGSHFHLPVYRVK-TADFLELAKQVQLPILATTLSKDSMDYRELAPLSDFALVLGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  +  E A ++ H+ M G  ++LNV+ AA + ++  
Sbjct: 209 ISHEMAEAADNLIHISMKGRAESLNVAVAAGILIFAL 245


>gi|308190283|ref|YP_003923214.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
 gi|319777677|ref|YP_004137328.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
 gi|307625025|gb|ADN69330.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans JER]
 gi|318038752|gb|ADV34951.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
          Length = 231

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 9/233 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           E L++ G ++V  AL   +  I  +      LA+            ++            
Sbjct: 2   EKLYVCGRNSVEDALK-VNLPIETIYVNSFQLAQKLKQITKAK---IEMKDNSFFANY-- 55

Query: 107 KEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           +   HQG+           L+ ++  N + ++VLDH+ DPHN+GAI+R+A       +I 
Sbjct: 56  RNDNHQGVIAILRDFPIYDLETIKKDNPENVLVLDHIQDPHNLGAIIRTANTCGIKHLII 115

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223
           +K  S + ++ + K +SG   ++  I++++++  L K+  W +     + D + + + Q 
Sbjct: 116 SKERSANITSTVLKVSSGGFVNMKIIKVNSISATLTKLKKWNYWIYVSALDETAQKVNQV 175

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             N    L++G EG G+   T   A  + ++   G ++++NVS A  + LY  
Sbjct: 176 TFNKPSVLVVGNEGDGVSKSTLNEADQVIYIPQKGSVQSMNVSVATGILLYEL 228


>gi|291559697|emb|CBL38497.1| rRNA methylases [butyrate-producing bacterium SSC/2]
          Length = 273

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 10/229 (4%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           A       I  L+  ++   +           PV T     + ++ G       L     
Sbjct: 47  AFEQGYEPISFLVEDRHIKTQAKDIILQYQDIPVYTASFDVLKQLTGFGLTRGMLCAMRR 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L        +++ +++L++V +P N+GAI RSA A + D I+ +K  S        + 
Sbjct: 107 KPLPALETICDHAKRIVILENVMNPTNVGAIFRSAAALNMDAILLSKGCSDPLYRRSVRV 166

Query: 180 ASGALEHIPYIRISN---LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIK--NDKIALIL 233
           + G +  IP+  + +     D + ++   G++ + ++  ++   ++ E     DK+A+IL
Sbjct: 167 SMGTVFQIPWTFLGDDTWPADGMHRLKELGYKNVAMALTARSVSIDDEALMSEDKLAIIL 226

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G EG GL  +T +       + M   + +LNV+ A+AVA +      AK
Sbjct: 227 GTEGDGLCQETIDACDYTVKIPMAHGVDSLNVAAASAVAFW----QLAK 271


>gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255]
          Length = 265

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 113/262 (43%), Gaps = 10/262 (3%)

Query: 26  NHRDYKKMQ--SFNQKSRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALA 79
           N +D +K++      KS++ ++     + G   V  AL   +      I +    K    
Sbjct: 6   NSKDNEKLKYTRALLKSKNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHV 65

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVL 138
           +L  D +  +   +     +   ++V  E   QG+    +       +++ +  + +++L
Sbjct: 66  KLLEDLDKKNT-KIYKTTNKNFKELVDTENT-QGIIGVVSFKKKKLSESINKKDKFVLIL 123

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+G I+R+A +   D II  K      +  + +S  G++  +  I  S   + 
Sbjct: 124 DRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDVNIIDASQ-DET 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +  + S  F  +    +++   ++     K+AL++G E  G+  +    +  +  + + G
Sbjct: 183 VDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYG 242

Query: 259 IIKALNVSNAAAVALYITQNHF 280
             ++LN + ++A+ +Y  + + 
Sbjct: 243 KAESLNAAISSAILMYEIKKYL 264


>gi|119713240|gb|ABL97306.1| putative tRNA/rRNA methyltransferase [uncultured marine bacterium
           HF10_12C08]
          Length = 228

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 63  NPSRKIFQLLATKNALARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           N +R  +++  T  A  +L  +  L  +         + ID ++   + HQG+ +    +
Sbjct: 2   NKNRVKYEVYFTSEAERKLRSEVKLESYNIITIRKTREEIDLVLKGISNHQGICIRVEKI 61

Query: 122 LSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             P L        + + ++ +LD ++DP N+GAI RSA+AF  DGII T   S +E++ L
Sbjct: 62  QPPHLTEFIKNLNKETSIIFLLDQLDDPQNVGAIFRSALAFDIDGIILTDHNSVAENSFL 121

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AK+AS A++ IP+ +I N++  ++ +   G+   GL  +++  +      +KI  ILG+E
Sbjct: 122 AKTASSAIDKIPFTKIKNISSCIKILKDQGYWIYGLDMEAQSSITDIAFPNKIVFILGSE 181

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            KG+R  T         + M   +++LNVSNAAA+ ++   N
Sbjct: 182 SKGMRRVTSSLCDENLKIKMSDNLESLNVSNAAAIMMFYISN 223


>gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
 gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Lutiella nitroferrum 2002]
          Length = 264

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 14/265 (5%)

Query: 20  YAKLRRNHRDY-KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           Y  L   H D  K +    Q +R   + + + L G+H + AAL        Q    + AL
Sbjct: 5   YRSLTSPHNDTLKHLARLVQFARDRRKDDVIVLEGIHLLEAALEQGIVP-AQCFINEAAL 63

Query: 79  ARLD---WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
            R +     A LP       VP   + K+    +  + +A+   P         R S   
Sbjct: 64  GRAEVSVLLARLPQTLSPLVVPEALLGKLTSLSSAPELIAVCPRPHPP------RRSGSC 117

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L+ + DP N+G ILRSA A     +  +K  +   S  + ++  GA   +     ++L
Sbjct: 118 LLLEDIQDPGNMGTILRSAAASGVMEVFLSKGCADVFSPKVLRAGMGAHFVLNLHEAADL 177

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + L          +    +  + L  +     +A + G EG G+     + A     + 
Sbjct: 178 AEVLGGFAGRK---LVTHLEGSQSLYAQDLRGDVAFVFGNEGAGVSAGLLQLADCRVRIP 234

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           MPG  ++LNV+ AA + L+      
Sbjct: 235 MPGHAESLNVAMAATICLFERVRQL 259


>gi|83858604|ref|ZP_00952126.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853427|gb|EAP91279.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 219

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/211 (38%), Positives = 113/211 (53%), Gaps = 9/211 (4%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
            T+NA   LD          +    P  I   +   AVHQG AL+T+   + +L+AV   
Sbjct: 3   VTRNAATELDDTFRKLADIEL----PGQITSRLPDGAVHQGFALKTSAPPAESLNAVLEP 58

Query: 133 --QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              LL+VLD + DPHN+GAILRS  AF    +I   R SP     L K+A G  E IP +
Sbjct: 59  THGLLVVLDQITDPHNVGAILRSCAAFGVRAVICQDRKSPPFFGALCKTAVGTAETIPQV 118

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQET 247
           +++N+ D L  +   G   IGL+ +++  L  EI       + L+LGAEG GLRP+  E 
Sbjct: 119 QVTNIADTLIALQEAGRHVIGLAGEAEARLGDEIAAHAGPGLVLVLGAEGSGLRPRVAEH 178

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +S+A + M    ++LNVSNAAA+ALY    
Sbjct: 179 CSSLARIPMGPKAESLNVSNAAAIALYEASR 209


>gi|332292458|ref|YP_004431067.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170544|gb|AEE19799.1| RNA methyltransferase, TrmH family, group 3 [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 244

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 13/241 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDKIVGK 107
           ++G   +  A+      I ++   K     L  + N            VP + ++K+   
Sbjct: 7   IFGTRAIIEAIQAGKE-IDKVFLQKGLHNPLLSELNTLIKKKGVQTSHVPIEKLNKLT-- 63

Query: 108 EAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +  HQG     + +     + + N+        L ++LD ++D  N GAI+R+A      
Sbjct: 64  QQNHQGAIAVVSAISFYDFEELVNAVVETEAAPLFILLDQLSDVRNFGAIIRTAECTGVH 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K+     + V  K+++GA  +IP  ++ ++ DA+  +   G Q +  +  ++  L
Sbjct: 124 GIIIPKKGGAPVNGVAIKTSAGAAFNIPIAKVDHIKDAIYYLQGSGVQVVAATEKTETTL 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +       A+++G E  G+ P   +     A L + G I +LNVS A    LY      
Sbjct: 184 FETDFTSPTAIVMGREDSGVSPGVLKIVDKQAKLPLKGSIASLNVSVACGAFLYEIVRQR 243

Query: 281 A 281
           +
Sbjct: 244 S 244


>gi|317051903|ref|YP_004113019.1| TrmH family RNA methyltransferase [Desulfurispirillum indicum S5]
 gi|316946987|gb|ADU66463.1| RNA methyltransferase, TrmH family, group 3 [Desulfurispirillum
           indicum S5]
          Length = 228

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 8/228 (3%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           GV++V  AL   S  I ++  +++        A   H  P+K +    +D   G+    Q
Sbjct: 5   GVNSVREALRCGSN-IEKIFLSRSLPD--IETAAREHDIPIKILNRDKMDSQFGQHN--Q 59

Query: 113 GLALETAPLL-SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           G+      +     L  + ++  +++ D V DP N+GAI+RSA AF  D ++ T+  S  
Sbjct: 60  GVGAIVGAIATQDPLTFLVDASCIVLADRVQDPGNLGAIIRSAAAFGAD-VVITEHQSAP 118

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            S  + K+++G + H    R+ N    ++K    GF T+ L  + +  L +   + KI L
Sbjct: 119 ISDTVIKASAGNIYHTRVGRVVNAARYVEKAKENGFWTVALDGEGE-SLFRLKLDGKILL 177

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++G EG GL+      A   A + M   +++LN S A A+ALY     
Sbjct: 178 MVGNEGSGLKDILLRHADWRASIPMRPGVESLNASAATAIALYEIARQ 225


>gi|183603699|ref|ZP_02718929.2| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|221232698|ref|YP_002511852.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|237650991|ref|ZP_04525243.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
           1974]
 gi|298230170|ref|ZP_06963851.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254776|ref|ZP_06978362.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503744|ref|YP_003725684.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|183575321|gb|EDT95849.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|220675160|emb|CAR69744.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|298239339|gb|ADI70470.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 246

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLRQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A          V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKG 239
            G+  H+P  R+++    L +        +  +        +E+ + +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 243


>gi|3687231|gb|AAC62129.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 56/327 (17%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRN-------HRDYKKMQSFNQKSRHTSQP------ENL 49
           +  +  + +   +K+       R+       +R++ + +S+ +K+   +        E  
Sbjct: 243 VEEEPDNTRWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGE 302

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDAN---------LPHPFPVKTV 96
            +YGV  V AAL+   R+ + L   +        R   D                 +K  
Sbjct: 303 VVYGVSPVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKET 362

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
               ++ +V     HQGL L+ +PL       L P         L + LD V DP N+GA
Sbjct: 363 SKHDLN-MVADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGA 421

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA  F   G++   + S   SAV++K+++G+LE +      N+   L+     G++ 
Sbjct: 422 IIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRV 481

Query: 210 IGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI------- 259
           +G S   K   L + +      L+LG EG GLRP  + + T +  +   MP         
Sbjct: 482 VGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESD 541

Query: 260 ------------IKALNVSNAAAVALY 274
                       +++LNVS AA + L+
Sbjct: 542 DAEGEGFRSFLAVESLNVSVAAGLFLH 568


>gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 260

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 8/259 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
               R +   K     +  +            G             ++  L  T++A+A+
Sbjct: 4   KITSRENAKIKYACRLSSSAAFRRSEGRFLAEGRKLCPEL--ARGAQLETLFYTESAMAK 61

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               A LP       V     DK+      HQG+          TLD V+     + L+ 
Sbjct: 62  CPELAGLPGEH--YLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLDEVKAGGRYLALER 117

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G +LRSA AF  DG+I +   +   +    +++ GA   IP I    + DA+ 
Sbjct: 118 VQDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRASMGATVRIPVIEAGAMPDAIT 177

Query: 201 KMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ + G   +  +    +PL   Q      + +++G+EG+GL  +T    +S   + M  
Sbjct: 178 QLRAKGITCLAAALYKSQPLSAAQASYPGGVCVVIGSEGQGLTDETIAACSSTVRIPMTD 237

Query: 259 IIKALNVSNAAAVALYITQ 277
            +++LN   A ++ L+  +
Sbjct: 238 RVESLNAGIAGSILLWHFR 256


>gi|291319976|ref|YP_003515234.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
 gi|290752305|emb|CBH40276.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
          Length = 233

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 13/238 (5%)

Query: 47  ENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + L++ G ++V  A+    P   ++ L  +K+   +L   +N+        V   +  K 
Sbjct: 2   KKLYMCGKNSVIDAIKAKLPIEAVYVL--SKSHADKLKEFSNIKI-----VVKDASFFKE 54

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
              E  HQG  L         +D ++  N + +++LDH++DPHN GAI+R+A A     I
Sbjct: 55  YNSE-NHQGYLLFLKDFNYYEIDVIKKDNPKNVLILDHIHDPHNFGAIIRTANAAGIKHI 113

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLE 221
           I  K  S   ++ + K +SG    +  I++SN+  +++K+  WGF     L  ++  P  
Sbjct: 114 IIPKDRSTDVTSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYN 173

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +       AL++G E KG+            ++   G ++++NVS A  + L+   N 
Sbjct: 174 KVQYTGNCALVVGNEEKGVSKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNR 231


>gi|257063283|ref|YP_003142955.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
 gi|256790936|gb|ACV21606.1| rRNA methylase [Slackia heliotrinireducens DSM 20476]
          Length = 286

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 20/267 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL------ATKNALARLDW 83
           Y ++     +++   +        +  +  AL      +  L+      A  + L R+  
Sbjct: 17  YARLTEAQLRNKLEPEKGIFIAESLKVIDRALAGGMVPLSVLMTPEWMDAAADMLERIQQ 76

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMV 137
                   P+   P   + K+ G +     L     P +    D +        ++ + V
Sbjct: 77  AGEGGADVPIYVGPADELQKLTGFKLTRGILCAMRRPKMPSAEDLLATCRNGGPARRVAV 136

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-----I 192
           L+ + D  N+GAI RSA A + D ++ T            + + G +  +P+ R      
Sbjct: 137 LEGIVDHTNVGAIFRSAAALNVDAVLVTPTCCDPLYRRAVRVSMGTVFQVPWTRLGEDVH 196

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETAT 249
                 L+++H+ GF+T  ++ SD    L        +K+AL+ G EG GL P+T  T  
Sbjct: 197 DWPGQGLERLHALGFKTAAMALSDDSVSLGDPTLAAEEKLALVFGTEGDGLSPRTIATCD 256

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
               + M   + +LNV+ A+AVA +  
Sbjct: 257 YTVRIPMSHGVDSLNVAAASAVAFWEL 283


>gi|217421307|ref|ZP_03452811.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
 gi|217395049|gb|EEC35067.1| RNA methyltransferase, TrmH family [Burkholderia pseudomallei 576]
          Length = 262

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +     L G H  SA L+   +    +  T  ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRGAQALLEGFHLASAYLDAAGQPQLCV-VTDGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +    +    P + V  P  +   +       GL L  A   +P L A R +   +VL
Sbjct: 61  HEEARGIVARIEPARVVTLPDVLFGQLSNVVNGVGLLLLVA-RPAPALPA-RVAGTSVVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A   + +      + + S+ + +SA GA   +      +    
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWSSKVLRSAMGAHFLLDIHEDVDAGTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++++           S   + +        +A + G EG G+  + +E AT    +  PG
Sbjct: 179 IERLA---IPVALTDSHGARAIYDCDLAGPLAWVFGNEGAGVSARWREAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|288926613|ref|ZP_06420528.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
 gi|288336582|gb|EFC74953.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
          Length = 273

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 6/221 (2%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+     +  L   K+               PV T P   +  + G       L     
Sbjct: 47  ALDKGCEPLALLCEHKHIAGDAAAIIARCGDLPVYTGPRPVLAALTGYTLTRGVLCAMRR 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PLL    +  R ++ ++V+  V D  NIGAI RSA A   D ++ T+      +    + 
Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-EIKNDK-IALILGAE 236
           + G++  +P+   + L D++  +   GF+T  ++  D   PL+   +  +  +A+++G E
Sbjct: 167 SMGSVFLVPW---TWLDDSIASLSRLGFRTAAMALTDRSVPLDDPALATEPRLAIVMGTE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GL  +T E A  +  + M   + +LNV+ A+AVA +  +
Sbjct: 224 GDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLR 264


>gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26]
 gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932]
 gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55]
 gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34]
 gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79]
 gi|260682395|ref|YP_003213680.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260685994|ref|YP_003217127.1| putative RNA methylase [Clostridium difficile R20291]
 gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291]
          Length = 265

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 113/262 (43%), Gaps = 10/262 (3%)

Query: 26  NHRDYKKMQ--SFNQKSRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALA 79
           N +D +K++      KS++ ++     + G   V  AL   +      I +    K    
Sbjct: 6   NSKDNEKLKYTRALLKSKNRNKESKFIIEGYRIVMLALECMANLDYVFINEEFENKKEHV 65

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVL 138
           +L  D +  +   +     +   ++V  E   QG+    +       +++ +  + +++L
Sbjct: 66  KLLEDLDKKNT-KIYKTTNKNFKELVDTENT-QGIIGVVSFKKKKLSESINKKDKFVLIL 123

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+G I+R+A +   D II  K      +  + +S  G++  +  I  S   + 
Sbjct: 124 DRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQ-DET 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +  + S  F  +    +++   ++     K+AL++G E  G+  +    +  +  + + G
Sbjct: 183 VDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYG 242

Query: 259 IIKALNVSNAAAVALYITQNHF 280
             ++LN + ++A+ +Y  + + 
Sbjct: 243 KAESLNAAISSAILMYEIKKYL 264


>gi|313678173|ref|YP_004055913.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
 gi|312950453|gb|ADR25048.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma bovis PG45]
          Length = 233

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 9/236 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + L++ G ++V+ A+      I  +    N  A       +     +KTV          
Sbjct: 2   KKLYMCGKNSVTDAIK-AKLPIEAVYVMSNFHAE-----KIKEFSNIKTVVKDANFFKDY 55

Query: 107 KEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               HQG  L         +D ++  N + +++LDH+ DPHN GAILR+A A     II 
Sbjct: 56  NSENHQGYLLFLKDFNYYEIDIIKKDNPKTVLILDHIQDPHNFGAILRTANAAGIKHIII 115

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223
            K  S   ++ + K +SG    +  I++SN+  ++ K+ SWGF       D +  P  + 
Sbjct: 116 PKDRSTDVTSTVLKVSSGGFVGVKIIKVSNIVASINKLKSWGFWIYSSLLDQNAVPYNKV 175

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             N+  AL++G E KG+      T     ++   G ++++NVS A  + L+   N+
Sbjct: 176 EYNEHCALVVGNEEKGISKPIINTTDVKVYIPQFGTVQSMNVSVATGILLFELVNN 231


>gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
           19718]
 gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
           19718]
          Length = 277

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 97/261 (37%), Gaps = 9/261 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R H  +KK+      +R         L G+H + + L +    +  L+ +++     + 
Sbjct: 6   SREHPLFKKLFKLQHSARQRHDEGMTLLDGIHLLQSCLASGKTPVL-LIVSESGSQHPEI 64

Query: 84  DANLPH--PFPVKT---VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
              L H    P KT   +   T+   +       G+                 +   ++L
Sbjct: 65  SQLLIHIDKDPQKTDCLMLSDTLFNQISPVKTPVGILALIDIPQHTLPADTYQNSFSILL 124

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + + DP N+G++LRSA A   +G+  +   + + S    ++  GA   +      +L   
Sbjct: 125 EGIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAWSPKTLRAGMGAHFSLKIHENVDLIQV 184

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            ++        +  +      L        +  + G EG G+  +  ET      + MPG
Sbjct: 185 ARQFAGN---VVATTLHDASNLFHTDLRGAVVFVFGNEGGGISEELLETVHQRVMIPMPG 241

Query: 259 IIKALNVSNAAAVALYITQNH 279
             ++LNV+ AAA+ L+     
Sbjct: 242 CTESLNVATAAAICLFEKVRQ 262


>gi|332358339|gb|EGJ36165.1| SpoU rRNA methylase [Streptococcus sanguinis SK355]
          Length = 246

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A++N +  I          A  ++   L     V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAVSNGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L++V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFERKEIPSELSGRYLF--LENVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           +   +   +    +S  G+  H+P  RI +  D ++   S     +  +  S      + 
Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRI-DTADFIRLARSSSLPILASTLSSTSIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +   L++G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 VSKESFVLVMGNEGQGISPEMTVAADILVHISMKGQAESLNVAVAAGILIF 243


>gi|157693283|ref|YP_001487745.1| SpoU rRNA methylase family [Bacillus pumilus SAFR-032]
 gi|157682041|gb|ABV63185.1| possible SpoU family rRNA methyltransferase [Bacillus pumilus
           SAFR-032]
          Length = 247

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 23/253 (9%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S K++H        + +KK+ +  ++++         + G+H V  AL +  R + +L
Sbjct: 4   IESAKNTHI-------KQWKKLHTKKERTK----TGLFLVEGIHLVEEALKS--RAVKEL 50

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           + T    +     +++     +  +  +    +   E      A+ T P+        + 
Sbjct: 51  MVT----SPDKLPSHIDPDIELYELSEEAFFAMTETETPQHIAAVCTVPVFEE-----KK 101

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            + L++LD V DP N+G ++R+A A   D +I       + +    +SA G+  H+P ++
Sbjct: 102 YERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAYNGKTLRSAQGSHFHLPILK 161

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +L   +      G    G + ++ K  +        ALI+G EG G+ P+  +     
Sbjct: 162 -QSLQQTIAACKEQGIPVYGSALNNAKAYKSVTAEGPFALIVGNEGGGINPEILQMTDHN 220

Query: 252 AHLHMPGIIKALN 264
            ++ M G  ++LN
Sbjct: 221 LYVPMYGQAESLN 233


>gi|328955415|ref|YP_004372748.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
 gi|328455739|gb|AEB06933.1| tRNA/rRNA methyltransferase (SpoU) [Coriobacterium glomerans PW2]
          Length = 291

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 101/261 (38%), Gaps = 12/261 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-- 87
           Y ++     +S    +           +  AL      I   L  ++ L  L+    L  
Sbjct: 19  YARLTERELRSVLEPEKGLFIAESAKVIERALEAGMEPI-SFLVAEDRLESLEPILALVD 77

Query: 88  -PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              P P+     + +  + G       LA    P L   ++ +   + + VLD + D  N
Sbjct: 78  AAEPIPIFVAAQELLVSLTGFALTRGALAAMRRPPLPDPVEMLAGCRRVCVLDGLVDHTN 137

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQK 201
           +GA  RSA A + D ++ +            + + G +  +P+      R S   D +  
Sbjct: 138 VGAAFRSAAALNVDAVLVSPTCCDPLYRRAVRVSMGTVFQVPWTRLGADRASWPQDGMAT 197

Query: 202 MHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           + + GF    L+  D    L+  I    D++AL  G EG+GL  +  E    +  + M G
Sbjct: 198 LRAAGFTCAALALADESISLDDPILTAIDRLALFFGTEGRGLSDRVIEACDMIVRIPMAG 257

Query: 259 IIKALNVSNAAAVALYITQNH 279
            + +LNV+ A+AV  +    H
Sbjct: 258 GVDSLNVAAASAVVFWQLCPH 278


>gi|332359132|gb|EGJ36953.1| SpoU rRNA methylase [Streptococcus sanguinis SK49]
          Length = 246

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+++ +  I          A  ++   L     V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAISSGAELIRI-------FALAEYAERLADFSQVIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFERKEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAACFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           +   +   +    +S  G+  H+P  R+ +  D ++   S     +  +  S      + 
Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSSLLILASTLSSTSIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              D   L++G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 DSKDSFVLVMGNEGQGISPEMTAAADVLVHISMKGQAESLNVAVAAGILIF 243


>gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 255

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 18/261 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   KK+   NQK ++     +  + G H    A+    +K   +L T+ AL +++ D 
Sbjct: 8   NNATIKKLAKLNQK-KYRDDEGSYLIEGFHLFEEAIK-AGKKYQYILGTEEALDKVNEDY 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHV 141
           NL        +  + I + +      Q + +         +D  R         ++LD++
Sbjct: 66  NLELDGKNVILINKAIARHLSSTKNSQEIFMVLK------IDQPREFPFNYGKWVLLDNL 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A   DG++ +   +   +    ++  G+  HI  I+  +L DA+  
Sbjct: 120 ADPGNVGTIIRTADAAGFDGVVLSSESADLYNPKTQRAMQGSQFHIELIK-RDLADAITD 178

Query: 202 MHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                        D S K L+   K  ++ALI+G E  G+       +    ++ + G  
Sbjct: 179 FQDAAIPVYASMLDKSAKQLQDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKA 238

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN + AA + +Y    HFA
Sbjct: 239 ESLNAAVAAGIMIY----HFA 255


>gi|296187098|ref|ZP_06855496.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
 gi|296048292|gb|EFG87728.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
          Length = 213

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 5/205 (2%)

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           K+     D  + L     +  V  Q + K++      QG+        +  L+       
Sbjct: 11  KSRFQSFDIKSKLQKSTKIYWVSEQVL-KLLSDTETPQGITAVV---DNKELNVENKEGF 66

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +++D V DP N+G I+R+A A    G+I TK      +    +S  G++ H+P I+ ++
Sbjct: 67  YVLVDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHVPVIQDND 126

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   +  +   GF  +  S ++ K         K  + +G EG G+  +    A     +
Sbjct: 127 LNK-VNFLKEKGFNLVASSLNTDKNFYDVDLKGKKIIAVGNEGSGISDEIYNMADIKVKI 185

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            MPG  ++LNVS AA V ++     
Sbjct: 186 PMPGGAESLNVSVAAGVMMFEVIRQ 210


>gi|315607159|ref|ZP_07882163.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315251213|gb|EFU31198.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 273

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+     +  L   K+               PV T P   +  + G       L     
Sbjct: 47  ALDKGCEPLALLCEHKHIAGDAAAIIARCGDLPVYTGPRPVLAALTGYTLTRGVLCAMRR 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PLL    +  R ++ ++V+  V D  NIGAI RSA A   D ++ T+      +    + 
Sbjct: 107 PLLPDVKEVCRGARRVVVIHGVVDTTNIGAIFRSAAALGIDAVLLTRDSCDPLNRRAVRV 166

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILGAE 236
           + G++  +P+   + L D++  +   GF+T  ++  D   PL+        ++A+++G E
Sbjct: 167 SMGSVFLVPW---TWLDDSIASLSRLGFRTAAMALTDRSVPLDDPALAAEPRLAIVMGTE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GL  +T E A  +  + M   + +LNV+ A+AVA +  +
Sbjct: 224 GDGLPRETIEQADYVVRIPMAHGVDSLNVAAASAVAFWQLR 264


>gi|118466066|ref|YP_880268.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
 gi|118167353|gb|ABK68250.1| SpoU rRNA methylase family protein [Mycobacterium avium 104]
          Length = 432

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 6/253 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +  R    LL T+  LA L  D     
Sbjct: 165 FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRP-HALLGTERRLAELRDDLA-GV 222

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P P        + ++VG       LA           + +  S+ + VL+ VND  N+GA
Sbjct: 223 PVPYYRTSADVMARVVGFHLNRGVLAAARRVPEPGVAELLAGSRTVAVLEGVNDHENLGA 282

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A     D +I     +        + + G    +PY R ++    L+ +   GF+ 
Sbjct: 283 IFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKTLKEKGFRL 342

Query: 210 IGLSSDSKKP-LEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + ++       L + +   + D++A+++GAEG GL P     +     + M     +LNV
Sbjct: 343 LAMTPQGSACGLAEAMTAARGDRVAVLVGAEGPGLTPAALRLSDVRVRIPMSRGTDSLNV 402

Query: 266 SNAAAVALYITQN 278
           + AAA+A Y    
Sbjct: 403 ATAAALAFYERSR 415


>gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
 gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
          Length = 270

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 108/256 (42%), Gaps = 12/256 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLD 82
           +++++K ++    KS    +     L G   +  A      +  ++  T          +
Sbjct: 9   DNKNFKYLKKLYNKS-FRKKEGKFILEGYRLIMEA--CGKARFDRIFMTPYFAKTDEGEE 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE--TAPLLSPTLDAVRNSQLLMVLDH 140
                    PV  V  + +  +   E   QG+A         +  L   RN  ++++LD 
Sbjct: 66  IIRKFKDHIPVHFVTGKLLYNVADTE-NPQGIAAITYVPRSGANILFHNRNRGIILILDR 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R+AVA   +GII  K      +  + +++ GA+  IP +   +    LQ
Sbjct: 125 IQDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGAIFSIPILTGVSFKR-LQ 183

Query: 201 KMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           K+      ++ I    ++ K   +    + + L++G E +G+R +    A     + + G
Sbjct: 184 KIRDEYPDYKLICTDLNTSKFYHEIDYQEPLMLVIGNEARGIREELLSLADIKIKIPLMG 243

Query: 259 IIKALNVSNAAAVALY 274
            I +LN + + A+ LY
Sbjct: 244 NIDSLNAAVSTAIVLY 259


>gi|219670018|ref|YP_002460453.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219540278|gb|ACL22017.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 275

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 103/256 (40%), Gaps = 8/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + ++     ++R   +           +  AL+     I  L+  K    +         
Sbjct: 18  FARLTETQLRNRLEPEMGIFIAESTKVIGLALDAGCEPISLLMERKYIAGQARGIITRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G +     L     P L    +   ++  + VL+ + D  N+GA
Sbjct: 78  DIPVYTADRNLLAGLTGFQLTRGVLCAMRRPHLPSVEEVCADASRVAVLEGIADSTNMGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-----LTDALQKMHS 204
           I RSA A   D ++ T            + + G +  +P+ RI +         ++ +  
Sbjct: 138 IFRSAAALGIDAVLLTPSCCDPLCRRGVRVSMGTIFQVPWARIGSELSQWPQQGMKILRK 197

Query: 205 WGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF+T+ ++ + K       Q +  +K+A++LG+EG GL P T       A + M   + 
Sbjct: 198 LGFKTVAMALNDKAVSIDDSQLMAEEKLAIVLGSEGNGLAPGTIADCDYTACIPMSHNVD 257

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+ A+AVA +  +
Sbjct: 258 SLNVAAASAVAFWQLR 273


>gi|147678286|ref|YP_001212501.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
 gi|146274383|dbj|BAF60132.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
          Length = 270

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 100/263 (38%), Gaps = 7/263 (2%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALA 79
           L R +   K ++    + R   +     + GV  V  ALN+       +     T+    
Sbjct: 2   LSRQNSRIKYLRRLGSR-RFREKEGKFLIEGVRFVEEALNSAWPVEMLVYCRRITETRRG 60

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNSQLLMV 137
               +       P+  V      ++ G     QG         +    L A     LL++
Sbjct: 61  EALLEKASFQGVPLVEVDESLFGELAGTT-TPQGALAVVKKGKVSLEDLQAGGEPALLVI 119

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +D V DP N+G I+RSA A    G+I  K  +   +A   ++  GA+ ++P ++     +
Sbjct: 120 VDGVQDPGNLGTIVRSAGAAGAGGVILLKGTADIFNAKALRATMGAIFYVPVVQDVTSVE 179

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           A+  +   G + +       K +         AL+LG+E  G              + MP
Sbjct: 180 AMTYLKQLGIKAVAGDPRGDKLIYDCDLTVPCALVLGSEAAGAGEPVLRMVAERVRIPMP 239

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G  ++LNV+ ++AV L+      
Sbjct: 240 GRAESLNVAVSSAVLLFEAVRQR 262


>gi|153810011|ref|ZP_01962679.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
 gi|149834189|gb|EDM89269.1| hypothetical protein RUMOBE_00392 [Ruminococcus obeum ATCC 29174]
          Length = 275

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 7/244 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +   P          +  AL      +  L+  K+               PV T   +T+
Sbjct: 30  NEPNPGLFIAESPKVIERALKAGYEPLSFLVEHKDLDGEAGDILARYPEIPVYTAEYETL 89

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+ G       L       L    +  +NS+ + +L+++ +P NIGAI RSA A   D 
Sbjct: 90  VKMTGYALARGMLCAMKRRTLPSVEEICKNSRRVAILENIVNPTNIGAIFRSAAALHMDA 149

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKMHSWGFQTIGLSS-DS 216
           ++ T   S       A+ + G +  IP+           D ++ + + GF+T+ ++  D 
Sbjct: 150 VLLTGGCSNPLYRRAARVSMGTVFQIPWTYFEKKTSWPEDGMKAIQNLGFKTVAMALRDD 209

Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ++    +  +K+A++LG EG GL  +T         + M   + +LNV+ A+AVA +
Sbjct: 210 SYSIDDPELLAQEKLAIVLGTEGDGLASETIADCDYTVKIPMAHGVDSLNVAAASAVAFW 269

Query: 275 ITQN 278
               
Sbjct: 270 ELGR 273


>gi|255008645|ref|ZP_05280771.1| putative rRNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146380|ref|ZP_07808573.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135147|gb|EFR52507.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 269

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R   +           +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRLEPEKGLFIAESPKVIKVALDAGYEPLAILCEQKHITGDAANIIERCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R ++ ++++D V D  NIGAI R
Sbjct: 80  VYTGDRELLATLTGYVLTRGVLCAMRLPVLRSMEEVCRRARRIVIIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++  +      +    + + GA+  +P+   + L   L  +  WGF+T+ +
Sbjct: 140 SAAALGIDAVLLMRNSCSPLNRRAIRVSMGAVFLVPW---TWLDGPLSDLARWGFRTVAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  D+   ++  +     K+A+++G EG GL  +    A  +  + M   + +LNV+ A+
Sbjct: 197 ALTDNSISIDDPVLTTEPKLAIVMGTEGDGLSHERIAEADYVVRIPMSHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           A+A +  +
Sbjct: 257 AIAFWQLR 264


>gi|89897126|ref|YP_520613.1| hypothetical protein DSY4380 [Desulfitobacterium hafniense Y51]
 gi|89336574|dbj|BAE86169.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 275

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 8/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + ++     ++R   +           +  AL+     I  L+  K    +         
Sbjct: 18  FARLTETQLRNRLEPEIGIFIAESTKVIGLALDAGCEPISLLMERKYIAGQAHGIITRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     +  + G +     L     P L    +A   +  + VL+ + D  N+GA
Sbjct: 78  DIPVYTADSNLLAGLTGFQLTRGVLCAMRRPHLPSVEEACAGASRVAVLEGIADSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-----LTDALQKMHS 204
           I RSA A   D ++ T            + + G +  +P+ RI +         ++ +  
Sbjct: 138 IFRSAAALGIDTVLLTPSCCDPLCRRAVRVSMGTIFQVPWARIGSESSQWPQQGMKSLRK 197

Query: 205 WGFQTIGLSS-DSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF+T+ ++  D+   ++  Q +  +K+A++LG+EG GL P T       A + M   + 
Sbjct: 198 LGFKTVAMALNDNAVSIDDPQLMAEEKLAIVLGSEGNGLAPCTIADCDYTACIPMSHNVD 257

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+ A+AVA +  +
Sbjct: 258 SLNVAAASAVAFWQLR 273


>gi|225572082|ref|ZP_03780946.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040416|gb|EEG50662.1| hypothetical protein RUMHYD_00376 [Blautia hydrogenotrophica DSM
           10507]
          Length = 290

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 7/254 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y +       +RH  +           +  ALN     I  L+  +   ++         
Sbjct: 33  YARFTEVQLLNRHEPEKGIFIAESPKVIERALNAGCVPISFLVEQRQVESQEQERLFRRG 92

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T P   + ++ G       L     P      +    ++ + VL++V +P N+GA
Sbjct: 93  NVPVYTAPFHVLTQLTGFALTRGMLCAMRRPKQPSVGEICAGARRIAVLENVVNPTNVGA 152

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQKMHSW 205
           I RSA A + DG++ T+  S        + + G +  IP+     + S     +  +   
Sbjct: 153 IFRSAAALNVDGVLLTQACSDPLYRRAIRVSMGTVFQIPWTFLDKQFSWPLQGIAHLREL 212

Query: 206 GFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GFQT+ ++           + +   ++A++LG EG GL  +T         + M   + +
Sbjct: 213 GFQTVAMALREDSLRVDDSRLVDAPRLAIVLGTEGDGLACETIAACDYTVCIPMSHGVDS 272

Query: 263 LNVSNAAAVALYIT 276
           LNV+ A++VA +  
Sbjct: 273 LNVAAASSVAFWQL 286


>gi|148377309|ref|YP_001256185.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
 gi|148291355|emb|CAL58738.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
          Length = 233

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 109/237 (45%), Gaps = 11/237 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           + L++ G ++V  A+      I  +   +K+   +L   +N+        V   +  K  
Sbjct: 2   KKLYMCGKNSVIDAIK-AKLPIEAVYVLSKSHADKLKEFSNIKI-----VVKDASFFKEY 55

Query: 106 GKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             E  HQG  L         +D ++  N + +++LDH++DPHN GAI+R+A A     II
Sbjct: 56  NSE-NHQGYLLFLKDFNYYEIDVIKKDNPKTVLILDHIHDPHNFGAIIRTANAAGIKHII 114

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQ 222
             K  S   ++ + K +SG    +  I++SN+  +++K+  WGF     L  ++  P  +
Sbjct: 115 IPKDRSTDVTSTVLKVSSGGFVGVKIIKVSNIASSIEKLKKWGFWIYSSLLDENAVPYNK 174

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  AL++G E KG+            ++   G ++++NVS A  + L+   N 
Sbjct: 175 VQYAGNCALVVGNEEKGISKPVVNATDVKVYIPQFGTVQSMNVSVATGILLFELVNR 231


>gi|111021948|ref|YP_704920.1| RNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110821478|gb|ABG96762.1| probable RNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 278

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 101/251 (40%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++         +   GV      L +    I  LL     L  L  D    
Sbjct: 27  DFRDLNSSDRRPDLPEGKGLVIAEGVLVAQRLLTSRFDPI-ALLGVDRRLEELTDDLA-H 84

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + ++VG       LA    P      D + +++ + VL+ VND  N+G
Sbjct: 85  VDVPFYRTTADVMAEVVGFHLNRGVLAAARRPAPLELPDVLEHTRTVAVLEGVNDHENLG 144

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D ++  K  +        + + G +  +P+  ++     L  +   GFQ
Sbjct: 145 SMFRNAAGLGVDAVVFGKGCADPLYRRAVRVSMGHVLRVPFAHVTKWPHDLDALRERGFQ 204

Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ +     L + +  +K+AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 205 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRARIPMAPGTDSLNVAT 264

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 265 AAAMAFYERVR 275


>gi|113476712|ref|YP_722773.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110167760|gb|ABG52300.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 261

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 112/271 (41%), Gaps = 18/271 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           + SL++S   ++R+ H           +S+   + +   + G H +  A       +  +
Sbjct: 2   LTSLQNSLVKQIRQLH-----------QSKGRQEQQLFLVEGTHLLEEACKRNY-PLITV 49

Query: 72  LATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T     +  +   L       ++ V  + I  +    +    +A+          + +
Sbjct: 50  CHTFEWQEKHKFLYELVSQKAQRIELVSTKIIQSLATTVSPDGVVAIA----PQSQTNFL 105

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L +VLD + DP N+G I+R+AVA + DG+  ++         + ++++G   ++  
Sbjct: 106 KITTLGIVLDKIQDPGNLGTIIRTAVATNIDGLFVSRDSVDLSHPKVVRASAGEWFNLHK 165

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               NL + + K+ S G Q +    +S     +        ++LG EG G+     + A 
Sbjct: 166 AISENLKNEILKLQSQGLQVLATVPNSNINYWEIDLRKPTIIVLGNEGSGISKDLIDLAD 225

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + +   +++LNV+ +AA+ LY  Q   
Sbjct: 226 YSVKIPLSNGVESLNVAVSAAIILYEIQRQR 256


>gi|297836270|ref|XP_002886017.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331857|gb|EFH62276.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 577

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 134/327 (40%), Gaps = 56/327 (17%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRN-------HRDYKKMQSFNQKSRHTSQP------ENL 49
           +  +  + +   +K+       R+       +R++ + +S+ +K+   +        E  
Sbjct: 243 IEEEPDNTRWSEIKNRFNRYDVRDQGHDNAAYRNWNRQESWGRKTWQEATESSVPRLEGE 302

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-------------RLDWDANLPHPFPVKTV 96
            +YGV  V AAL+   R+ + L   +                       +      +K  
Sbjct: 303 VVYGVSPVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFEKVLKISEKLGLNLKET 362

Query: 97  PPQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
               ++ +V     HQGL L+ +PL       L P       S L + LD V DP N+GA
Sbjct: 363 SKHDLN-MVADNRPHQGLVLDASPLELVKVKELDPISSEEEKSSLWVALDEVTDPQNLGA 421

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA  F   G++   + S   SAV++K+++G+LE +      N+   L+     G++ 
Sbjct: 422 IIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRV 481

Query: 210 IGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI------- 259
           +G S   K   L + +      L+LG EG GLRP  + + T +  +   MP         
Sbjct: 482 VGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTELVRISGNMPNDVSVTESD 541

Query: 260 ------------IKALNVSNAAAVALY 274
                       +++LNVS AA + L+
Sbjct: 542 DAEGEGFRSFLAVESLNVSVAAGLFLH 568


>gi|238026918|ref|YP_002911149.1| TrmH family RNA methyltransferase protein [Burkholderia glumae
           BGR1]
 gi|237876112|gb|ACR28445.1| RNA methyltransferase, TrmH family protein [Burkholderia glumae
           BGR1]
          Length = 260

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    ++   +     L G+H  +A L+   +    +  T  ALA  + 
Sbjct: 6   SRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLAAAYLDANGQPELCV-VTDGALAHDET 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +    P + V  P  +   +       GL L      +   + V  +  ++VLD V 
Sbjct: 65  RAIVARVEPQRVVSLPDALFGQLSSVVNGVGLLLLVERPAAALPERVTGT--VVVLDGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +         D + ++
Sbjct: 123 DAGNVGSILRSAAAAGVAQVFCVSGTAYAWSSKVLRSGMGAHFLLDIHEDVEAADLIARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G       S   + ++    +  +A + G EG G+    +E A     +  PG +++
Sbjct: 183 ---GVPVALTDSHGARAIDDCDLSGPVAWVFGNEGAGVSAPWREAAKLRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ AAAV L+     
Sbjct: 240 LNVAAAAAVCLFEQCRQ 256


>gi|228919042|ref|ZP_04082421.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228950640|ref|ZP_04112774.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956533|ref|ZP_04118329.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229040997|ref|ZP_04189760.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|229067857|ref|ZP_04201174.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
 gi|229077387|ref|ZP_04210047.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
 gi|229107778|ref|ZP_04237414.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
 gi|229125609|ref|ZP_04254641.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|229142898|ref|ZP_04271339.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|229148501|ref|ZP_04276757.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|229176692|ref|ZP_04304096.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
 gi|229188377|ref|ZP_04315425.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228595051|gb|EEK52822.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228606735|gb|EEK64152.1| tRNA/rRNA methyltransferase [Bacillus cereus 172560W]
 gi|228634917|gb|EEK91490.1| tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|228640519|gb|EEK96908.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228657801|gb|EEL13607.1| tRNA/rRNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228675627|gb|EEL30835.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock1-15]
 gi|228705921|gb|EEL58247.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock4-2]
 gi|228715216|gb|EEL67075.1| tRNA/rRNA methyltransferase [Bacillus cereus F65185]
 gi|228727294|gb|EEL78488.1| tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|228803098|gb|EEM49920.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228808991|gb|EEM55476.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228840567|gb|EEM85829.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 161

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 80/152 (52%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +        ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+
Sbjct: 3   EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP  R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E
Sbjct: 63  IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGTMPIGLVIGSEGKGMSRIIGE 122

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +  L M G + +LN S AA++ +Y    
Sbjct: 123 KCDFLITLPMVGKVTSLNASVAASLLMYEVYR 154


>gi|228912831|ref|ZP_04076478.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925345|ref|ZP_04088441.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931594|ref|ZP_04094500.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943898|ref|ZP_04106283.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228983347|ref|ZP_04143560.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089223|ref|ZP_04220504.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
 gi|229119754|ref|ZP_04249015.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
 gi|229153870|ref|ZP_04282000.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|229182486|ref|ZP_04309737.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228600941|gb|EEK58510.1| tRNA/rRNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228629551|gb|EEK86248.1| tRNA/rRNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|228663655|gb|EEL19234.1| tRNA/rRNA methyltransferase [Bacillus cereus 95/8201]
 gi|228694062|gb|EEL47744.1| tRNA/rRNA methyltransferase [Bacillus cereus Rock3-42]
 gi|228776337|gb|EEM24690.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228815731|gb|EEM61967.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828022|gb|EEM73750.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834267|gb|EEM79808.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846767|gb|EEM91772.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 175

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 81/157 (51%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L    +        ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++
Sbjct: 12  LFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKAST 71

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA+E+IP  R++NL+  + ++   G    G  +  K           I L++G+EGKG+ 
Sbjct: 72  GAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMS 131

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               E    +  L M G + +LN S AA++ +Y    
Sbjct: 132 RIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 168


>gi|197302656|ref|ZP_03167710.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
           29176]
 gi|197298238|gb|EDY32784.1| hypothetical protein RUMLAC_01386 [Ruminococcus lactaris ATCC
           29176]
          Length = 271

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 8/247 (3%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           ++   +           +  ALN     +  L+  K                PV T    
Sbjct: 25  NKDHPEEGMFIAESPKVIERALNAGYTPVAVLVEKKQIEGEAASVLARCDEIPVYTAEFD 84

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + ++ G +     L       L       +N++ + VL++V +P N+GAI RSA A + 
Sbjct: 85  VLAQLTGFKLTRGMLCAMRRRGLPEVEKVCQNAKKVAVLENVMNPTNVGAIFRSAAALNM 144

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHSWGFQTIGLS- 213
           D ++ T   S       ++ + G +  IP+  I       + + ++++H  GFQT  L+ 
Sbjct: 145 DAVLLTGGCSNPLYRRASRVSMGTVFQIPWTFIGEKQEDWIENGIRRLHGLGFQTAALAL 204

Query: 214 SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           SD    ++ +   +  K+A+ILG EG GL  +T         + M   + +LNV+ A+AV
Sbjct: 205 SDDSVSIDDKRLREEKKLAIILGTEGDGLAEQTIAECDYTVKIPMTHGVDSLNVAAASAV 264

Query: 272 ALYITQN 278
           A +    
Sbjct: 265 AFWELGR 271


>gi|291538217|emb|CBL11328.1| rRNA methylases [Roseburia intestinalis XB6B4]
          Length = 296

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            H  PV     + + KI G +     L     P LS      +N++ + +L++V +P N+
Sbjct: 95  EHVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVVNPTNV 154

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTD-ALQKMH 203
           GAI RSA A   D ++ T+  +       ++ + G +  IP+       +  D A+  +H
Sbjct: 155 GAIFRSAAALGMDAVLLTQACADPLYRRASRVSMGTVFQIPWTYFDKSASWPDGAMDVLH 214

Query: 204 SWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             G++T  ++  D    ++ E  +  +K+A++LG EG GL   T         + M   +
Sbjct: 215 KLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMTHGV 274

Query: 261 KALNVSNAAAVALYIT 276
            +LNV+ A+AVA +  
Sbjct: 275 DSLNVAAASAVAFWQL 290


>gi|324991298|gb|EGC23231.1| SpoU rRNA methylase [Streptococcus sanguinis SK353]
 gi|325687125|gb|EGD29148.1| SpoU rRNA methylase [Streptococcus sanguinis SK72]
          Length = 246

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 101/231 (43%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+++ + K+ ++ A        ++   L     V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAVSSGA-KLIRIFAL------AEYAERLADFSQVIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFEREEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQE 223
           ++  +   +    +S  G+  H+P  R+ +  D ++   S     +  +  S      + 
Sbjct: 134 SQLSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLARSSRLPILVSTLSSISIDYRKV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  ALI+G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 DSKESFALIMGNEGQGISPEMTAAADILVHISMKGQAESLNVAVAAGILIF 243


>gi|145219176|ref|YP_001129885.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205340|gb|ABP36383.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
           265]
          Length = 250

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 9/243 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           Q+ ++  Q E     G+ TV   L +      +  L  + +A A L       +   V +
Sbjct: 5   QRKKYRDQEEMFLGEGLRTVRELLLHLPGPDSLVALFLSPDAEALLPE--AEAYRGKVFS 62

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           V      ++ G E+    +     P  SP   L      ++++ LD V DP N G ILR+
Sbjct: 63  VDSADFLRLTGTESPQGVVGAFRQPRFSPVDELPVTGEGRMVVALDGVQDPGNAGTILRT 122

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F  D +++        +    +S++G+L  +P+  + +LTD L+++   G+  +  S
Sbjct: 123 AAWFGADALLSGPGTVDLYNPKTVRSSAGSLFSLPHYSVDSLTDELERLKQNGYGVLCSS 182

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGI--IKALNVSNAAA 270
            + +   E     ++  L++G E  G+       A  +  +    G   +++LN S +AA
Sbjct: 183 LEGRDFREFTDWPERKVLVVGNEANGISSGVLSLADRLVLIPHGRGGVRVESLNASVSAA 242

Query: 271 VAL 273
           V L
Sbjct: 243 VLL 245


>gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 246

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVTYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|199597200|ref|ZP_03210632.1| rRNA methylase [Lactobacillus rhamnosus HN001]
 gi|199592004|gb|EDZ00079.1| rRNA methylase [Lactobacillus rhamnosus HN001]
          Length = 253

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 103/275 (37%), Gaps = 28/275 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K     K                   H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     + + AT+     +D  A  P    +  +     + +   E   QG+      
Sbjct: 42  LASRQTP-YDIYATE---KYVDDRALKPFYDKITQISESVSEHLSDTE-TPQGIFAVMPR 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D +      ++LD + DP N+G ++R+A A     +I     + +    + ++ 
Sbjct: 97  QAGQLPDPLSGQ--FLLLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+  +    L   ++ +   G    G    D  K       + +  L++G EG G
Sbjct: 155 QGSQFHVRIVSAK-LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNG 213

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   +   +  ++ + G  ++LNV+ AAA+ ++
Sbjct: 214 MDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMF 248


>gi|160894110|ref|ZP_02074888.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
 gi|156864143|gb|EDO57574.1| hypothetical protein CLOL250_01664 [Clostridium sp. L2-50]
          Length = 287

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 12/245 (4%)

Query: 46  PENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            E LF+      +  AL+     +   LA K  LA  +   +     P+   P + + K+
Sbjct: 43  EEGLFITESPKVIERALDGGYEPV-SFLAEKGQLAEAEEILDRMEDVPIYVAPDEILTKL 101

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            G               L    +  + ++ + +L+ V +P N+GA+ R A A   D +I 
Sbjct: 102 TGYHLTRGLWCTMRRRTLPTIEEVCQGAKRIAILEEVVNPTNVGALFRCAAALGMDAVIL 161

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRIS-----NLTDALQKMHSWGFQTIGLSSDSKK- 218
           T   S       ++ + G +  IP+  +S         A++ +   GF+T  ++      
Sbjct: 162 TGGCSDPLYRRASRVSMGTVFQIPWTMLSKKDGVWPEQAMKTLKEMGFKTAAMALREDSV 221

Query: 219 --PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                Q    +K+A++LG EG GL   T         + M   + +LNV+ A AVA +  
Sbjct: 222 GIDDPQLNSEEKLAIVLGTEGDGLAGDTIADCDYTVMIPMAHGVDSLNVAAAGAVAFWQL 281

Query: 277 --QNH 279
             Q  
Sbjct: 282 GHQRQ 286


>gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
           12042]
 gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
           12042]
          Length = 244

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 20/251 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +++ K+Q    + ++  Q     + G H +  AL   +  + QLL         + +   
Sbjct: 12  KNWAKLQ----QKKYRDQTGKFLVEGEHLIGEALKAGA--VEQLLIEAGRTNPFEREKEA 65

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                        + K+    +    +A+ T    +P           +VLD V DP N+
Sbjct: 66  I------VCGESVMRKLSANVSGAWLIAVCTQKTTAPA------GLRTVVLDGVQDPGNV 113

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+AVAF  D ++ +   +   +    +S  GAL HI   R + L  AL ++   G 
Sbjct: 114 GTIIRTAVAFGFDQVLLSPDCADVYNEKCVRSTQGALFHIAISR-TELIPALNELKELGV 172

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             IG +    +PL +   ++ IA++LG EG+G+RP T +     A + M    ++LNV+ 
Sbjct: 173 TVIGTALQGAQPLSELPVSENIAVVLGNEGQGIRPATLDICDQRALIEMS-SFESLNVAV 231

Query: 268 AAAVALYITQN 278
           AA + LY  + 
Sbjct: 232 AAGICLYRYRR 242


>gi|324993655|gb|EGC25574.1| SpoU rRNA methylase [Streptococcus sanguinis SK405]
 gi|327462924|gb|EGF09245.1| SpoU rRNA methylase [Streptococcus sanguinis SK1]
 gi|327474528|gb|EGF19933.1| SpoU rRNA methylase [Streptococcus sanguinis SK408]
          Length = 246

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+++ +  I          A  ++   L     V  V  + +  +
Sbjct: 24  RKDSYLIEGWHLFEEAVSSGAELIRI-------FALAEYAEQLADFSLVIFVSSEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFERKEIPLELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           ++  +   +    +S  G+  H+P  R+ +  D ++   S     +  +  S        
Sbjct: 134 SQLSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLAQSSRLPILASTLSSTSIDYRNV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +   L++G EG+G+ P+  E A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 DSKESFVLVMGNEGQGISPEMTEAADVLVHISMKGQAESLNVAVAAGILIF 243


>gi|159030692|emb|CAO88365.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 264

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 110/273 (40%), Gaps = 18/273 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S+++    ++R+ HR           +R   +     + G H +  AL          
Sbjct: 2   ISSVQNPLIKQIRKLHR-----------TRERQEQNLSLIEGTHLLETALAVNCSPETVC 50

Query: 72  LATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
              K    +      L +    V+ V P+ +  +        G+    +      L  + 
Sbjct: 51  YTEKWRQRQGQLAEKLQNQAKRVEIVSPEVLASLA-TTVNPDGVIATIS---RTHLHPIP 106

Query: 131 NSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            + L   +VL+ + DP N+G I+R+AVA    GI  +      ++  + +S++G     P
Sbjct: 107 QNPLQLGLVLERLQDPGNLGTIIRTAVATEVQGIWLSLDSVEIDNPKVIRSSAGEWFRSP 166

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  S+L+  ++K  + G + I     + K   +        ++LG EG GL P+    A
Sbjct: 167 LVVESDLSALVKKYQAQGVKAIATLPTATKNHWEIDFTRPTLILLGNEGAGLSPQLATLA 226

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + + G +++LNV+ A AV LY  +   +
Sbjct: 227 DETVKIPLFGGVESLNVAIATAVILYEARRQLS 259


>gi|118100342|ref|XP_001235387.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 317

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 28/259 (10%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLD----WDANLPHPFPVKTVP 97
                +  L+GV   S AL+   R +F+L   +     RL              PV  V 
Sbjct: 49  ERTRGSEILFGVAPCSMALSQARRDLFRLFLKRSGGPQRLVTSEFVLQAAARGVPVLHVG 108

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----------LMVLDHVNDPHN 146
            + +D + G   VHQG+ LE  PL    L+      L            + L+ + DP N
Sbjct: 109 RRELDTLCG-GRVHQGVCLEATPLRFKRLEEAEEPGLGDGESPNRQLLWLALEQIQDPMN 167

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA+LRSA     D ++T++R S   +  ++K++SGA+E        +L   L+   + G
Sbjct: 168 LGALLRSAYFLGVDRVVTSQRNSCPLTPTVSKASSGAMEVFDVYSTDDLRSFLKAKAAEG 227

Query: 207 FQTIGLSSDSKK-------PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---- 255
           ++ +G  S S+           +   N  I L++G+EG GL  +TQ     M  +     
Sbjct: 228 WEVVGTVSQSETVENVPVISCLEFRWNKPIILVIGSEGDGLSLETQLLCHQMLVIPSGRA 287

Query: 256 MPGIIKALNVSNAAAVALY 274
           +   I++LNVS A  + L+
Sbjct: 288 LHPGIESLNVSVATGILLH 306


>gi|186685767|ref|YP_001868963.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
 gi|186468219|gb|ACC84020.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
          Length = 258

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 17/272 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           + SL++S   ++R+ H            ++   + +   L G H +  A       +  +
Sbjct: 2   LTSLQNSLVKQIRKLH-----------STKERHKQQLFLLEGTHLLEEACAVNY-PLETV 49

Query: 72  LATKN--ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T +  A     W+         + V  + ++ I        G+        S T   +
Sbjct: 50  CCTSDWQAAHSSLWEKASSKSDRTEIVSEEVLNAIA-TTVQPDGVVATAKRTDSQT--QL 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L++ L+ V DP N+G I+R+A A    G+  +      +S  + ++++G    +  
Sbjct: 107 PFTGLVLALETVQDPGNLGTIIRTAAAVGASGLWVSGDSVDLDSPKVLRASAGQWFRLAM 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               NL   +Q+    G Q +     +              ++LG EG GL       A 
Sbjct: 167 SVTENLKATVQQSQQAGMQVVATLPSATLTYWDVDWRKPSLILLGNEGAGLSADLAAIAD 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + +   +++LNV+ AAA+ LY  +   +
Sbjct: 227 KQVRIPLSPGVESLNVAIAAALMLYEARRQMS 258


>gi|289422379|ref|ZP_06424225.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
 gi|289157214|gb|EFD05833.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
           anaerobius 653-L]
          Length = 260

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 110/259 (42%), Gaps = 9/259 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---N 76
           Y K + N +   K+      +++ ++       G  T+  A+   +  I  +   +   N
Sbjct: 2   YIKSKDNDKF--KLTKSLLTTKYRNKEGKYIAEGQRTIELAIEYGA-SIEFVFVNERFYN 58

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLL 135
             ++    A+L     V  +      ++V  E   QG+          + D  +N  + +
Sbjct: 59  DPSKGVLIASLKESTHVYILDDSLFRQVVTTE-NSQGILAVINKKKMDSEDFNKNKHKKI 117

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+D V DP N+G I+R+A A   D II  K      +  + +SA G++ ++  + + N 
Sbjct: 118 VVVDRVQDPGNMGTIIRTADAAGFDLIICIKGTVDYYNPKVVRSAMGSMFYMDMMSLDN- 176

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            +A   +       +    D++   ++    +  AL++G E  G+       +  +  + 
Sbjct: 177 EEARDLLKVNDIDIVSSYLDTENYYDKVDYKENTALVVGNEANGISDFWIRQSDVLVKIP 236

Query: 256 MPGIIKALNVSNAAAVALY 274
           M G  ++LNV+ ++A+ +Y
Sbjct: 237 MFGKAESLNVAVSSALLMY 255


>gi|229027939|ref|ZP_04184092.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
 gi|229170943|ref|ZP_04298544.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228612483|gb|EEK69704.1| tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228733327|gb|EEL84156.1| tRNA/rRNA methyltransferase [Bacillus cereus AH1271]
          Length = 175

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 81/157 (51%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L    +        ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++
Sbjct: 12  LFKVAEKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKAST 71

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           GA+E+IP  R++NL+  + ++   G    G  +  K           I L++G+EGKG+ 
Sbjct: 72  GAIEYIPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMS 131

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               E    +  L M G + +LN S AA++ +Y    
Sbjct: 132 RIIGEKCDFLITLPMVGKVTSLNASVAASLLMYEVYR 168


>gi|291524802|emb|CBK90389.1| rRNA methylases [Eubacterium rectale DSM 17629]
          Length = 302

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 105/284 (36%), Gaps = 35/284 (12%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +R   +           +  AL+     +  L+ TK+             
Sbjct: 19  YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + K+ G       L     P      +  R+++ + VL+ V +P N+GA
Sbjct: 79  NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--------NLTDA--- 198
           I RSA A   D ++ T   S        + + G +  +P+              +DA   
Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198

Query: 199 ---------------------LQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILG 234
                                +  +H  GF+T  ++  D    ++  + N  +++A++LG
Sbjct: 199 DKCDSRDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLNSEERLAIVLG 258

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            EG GL  +T ++      + M   + +LNV+ A+AVA +    
Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302


>gi|270292099|ref|ZP_06198314.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
 gi|270279627|gb|EFA25469.1| SpoU rRNA Methylase family protein [Streptococcus sp. M143]
          Length = 252

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 109/275 (39%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 7   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A ++   +L   A  P       V  + +  +   +   QG+      
Sbjct: 46  VQAGV-TIEKIFALESYRDQL---AAFPQTV---WVSEEILRDLADSQ-TPQGIVAIVQK 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D +R  +  + L+ V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 98  EEVGLPD-LRQGKF-LFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  R+  +   ++         +  + S   K   +    +   L++G EG+G
Sbjct: 156 QGSHFHLPIYRMP-VATFVEGAKKSDLPILATTLSRESKDYRELSPLEDFVLVMGNEGQG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 215 ISSVMAESADQLVHISMKGRAESLNVAVAAGILMF 249


>gi|257090594|ref|ZP_05584955.1| predicted protein [Enterococcus faecalis CH188]
 gi|312905124|ref|ZP_07764245.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0635]
 gi|256999406|gb|EEU85926.1| predicted protein [Enterococcus faecalis CH188]
 gi|310631514|gb|EFQ14797.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0635]
 gi|315166404|gb|EFU10421.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX1341]
 gi|315579047|gb|EFU91238.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0630]
          Length = 258

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  K+ ++   K  H  K R                    +     + G H +  A
Sbjct: 1   MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +  +    QG+      
Sbjct: 42  VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +    ++      ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 99  LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++   LT+ +Q     G    G    ++     ++   +  ALILG EG G
Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 272

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 105/284 (36%), Gaps = 25/284 (8%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I+ + +E+I  LK  H  K    HRD                       G+  +  AL  
Sbjct: 3   ITSRSNERIKYLKKFHEKK----HRDL---------------ENGFLAEGLKVIEEALQA 43

Query: 64  PSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
               +  LL T + L         D        +     Q +  +   +     LAL   
Sbjct: 44  GWE-VRMLLYTSDVLRHPRGVALLDKARATGTELWECEKQVLAVVTDTKTPQGALALIAK 102

Query: 120 PLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           P  S   L   R + L++VLD + DP N+G I+R+A A    G+IT +         + +
Sbjct: 103 PEHSLDVLLQGRGTPLVVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPKVVR 162

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GAL H+P          L+     G Q           L +   +   AL +G E +
Sbjct: 163 ASAGALFHLPAFGDLPAPAVLEFFTGAGVQKFVADPRGDYSLYECDFSRPTALFMGNEAR 222

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G        A  +  + MPG  ++LNV  AA++ +Y       K
Sbjct: 223 GCGEMLHAAADRVVAIPMPGQAESLNVGVAASLFIYEAVRQRLK 266


>gi|327470414|gb|EGF15870.1| SpoU rRNA methylase [Streptococcus sanguinis SK330]
          Length = 246

 Score =  199 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+++ +  + ++ A      RL   A+         V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAISSGAE-LIRIFALAEYAERL---ADFSQMI---FVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFEREKIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQE 223
           +   +   +    +S  G+  H+P  R+ +  D ++   S     +  +   +     + 
Sbjct: 134 SSSSADIYNLKTLRSMQGSHFHLPVYRM-DTADFIRLARSSRLPILASTLSFASIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  AL++G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 GSKESFALVMGNEGQGISPEMTAAADILIHISMRGQAESLNVAVAAGILIF 243


>gi|160943165|ref|ZP_02090402.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445634|gb|EDP22637.1| hypothetical protein FAEPRAM212_00650 [Faecalibacterium prausnitzii
           M21/2]
          Length = 275

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 8/257 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     ++R   +           ++ AL+   + +  L+  K              
Sbjct: 18  YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGYQPLSLLMERKQITGPAQEILTRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + + ++ G       L     P          +++ + VL+ + D  N+GA
Sbjct: 78  DVPVYTADRELLAQLTGFALTRGVLCAFRRPAPRTVEQVCAHARRVAVLEGIVDSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204
           I RSA A + D ++ T            + + G +  +P+ +I         +   ++H+
Sbjct: 138 IFRSAAALNMDAVLITPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGSAQLHA 197

Query: 205 WGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF+T  ++ SD    ++        K+A++LG EG GL   T         + M   + 
Sbjct: 198 LGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAACDYTVKIPMSHGVD 257

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ A+AVA +    
Sbjct: 258 SLNVAAASAVAFWQLGR 274


>gi|295104633|emb|CBL02177.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
          Length = 275

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 100/257 (38%), Gaps = 8/257 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     ++R   +           ++ AL+   + +  L+  K              
Sbjct: 18  YARLTQAQLRNRLEPEKGIFIAESPKVIARALDAGHQPLSLLMERKQITGPAQEILTRCG 77

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T   + + ++ G       L     P          +++ + VL+ + D  N+GA
Sbjct: 78  DVPVYTADRELLAQLTGFALTRGVLCAFRRPAPRTVEQVCAHARRVAVLEGIVDSTNVGA 137

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDALQKMHS 204
           I RSA A + D ++ T            + + G +  +P+ +I         +   ++H+
Sbjct: 138 IFRSAAALNMDAVLVTPSCCDPLCRRAVRVSMGTVFQVPWAQIGTCPADWPENGSAQLHA 197

Query: 205 WGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF+T  ++ SD    ++        K+A++LG EG GL   T         + M   + 
Sbjct: 198 LGFKTAAMALSDRSVSIDDAALAAEPKLAIVLGTEGDGLANSTIAACDYTVKIPMSHGVD 257

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ A+AVA +    
Sbjct: 258 SLNVAAASAVAFWQLGR 274


>gi|240144927|ref|ZP_04743528.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
 gi|257203016|gb|EEV01301.1| tRNA/rRNA methyltransferase [Roseburia intestinalis L1-82]
          Length = 296

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            H  PV     + + KI G +     L     P LS      +N++ + +L++V +P N+
Sbjct: 95  EHVIPVYVAEVEMLAKITGYQLTRGMLCAMYRPALSSVEQLCKNARRVAILENVVNPTNV 154

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKMH 203
           GAI RSA A   D ++ T   +       ++ + G +  IP+            A+  +H
Sbjct: 155 GAIFRSAAALGMDAVLLTPACADPLYRRASRVSMGTVFQIPWTYFDKNACWPDGAMDVLH 214

Query: 204 SWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             G++T  ++  D    ++ E  +  +K+A++LG EG GL   T         + M   +
Sbjct: 215 KLGYKTAAMALRDDSVCIDDEKMMSEEKLAIVLGTEGDGLADHTIADCDYTVKIPMTHGV 274

Query: 261 KALNVSNAAAVALYIT 276
            +LNV+ A+AVA +  
Sbjct: 275 DSLNVAAASAVAFWQL 290


>gi|119716827|ref|YP_923792.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119537488|gb|ABL82105.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 267

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 115/254 (45%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY+ ++    +    +        G   V  ++         L+A +      +      
Sbjct: 17  DYRDLRDVELRKHLEATHGLFLAEGEKVVRRSVEAGFTPRSFLMAPRWLDGLAEVLDR-- 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNI 147
              P   V     +++ G   VH+G          P++D+ +  ++ ++VL+ + D  NI
Sbjct: 75  SDAPCYVVSAALAEEVTGFH-VHRGALASLERRPLPSVDSVLSGARSVLVLEDIVDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RS  A   D ++   R +        K A GA+  +P+ R+ +   AL ++ + GF
Sbjct: 134 GAIFRSGAALGFDAVLLAPRCADPLYRRSIKVAMGAVFAVPWTRLPDWYGALPELSAAGF 193

Query: 208 QTIGLSSDS-KKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            T+ L+  +   P+E  +   DK+AL+LG+EG GL P+ ++ A   A + M   I +LNV
Sbjct: 194 TTVALTLATDAVPIESAVAGLDKVALVLGSEGHGLSPRWEQAADRRAIIPMREGIDSLNV 253

Query: 266 SNAAAVALYITQNH 279
           + A AVA Y+T   
Sbjct: 254 AAATAVACYVTARR 267


>gi|229552522|ref|ZP_04441247.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258539895|ref|YP_003174394.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|229314074|gb|EEN80047.1| SpoU family rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151571|emb|CAR90543.1| rRNA methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 253

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 104/275 (37%), Gaps = 28/275 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS  K+++I + K     K                   H        L G H V  A
Sbjct: 1   MEYISSPKNDRIKTAKKLTVKK-------------------HQKDAGRYLLEGRHLVQEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     + + AT+    +   D  L   +   T   +++ + +      QG+      
Sbjct: 42  LASGQTP-YDIYATE----KYVDDRALKPFYDKMTQISESVSEHLSDTETPQGIFAVMPR 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D +      ++LD + DP N+G ++R+A A     +I     + +    + ++ 
Sbjct: 97  QAGQLPDPLSGQ--FLMLDAIQDPGNVGTLVRTADAAGIKTVIFGNGTADAFGPKVLRAM 154

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+  +    L   ++ +   G    G    D  K       + +  L++G EG G
Sbjct: 155 QGSQFHVRIVSAK-LMPVIKALQRAGIPVYGSELNDKAKSYRSIQPSAQFGLVVGNEGNG 213

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P   +   +  ++ + G  ++LNV+ AAA+ ++
Sbjct: 214 MDPVLLKQTDTNLYIPIRGQAESLNVAVAAAIMMF 248


>gi|152965580|ref|YP_001361364.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151360097|gb|ABS03100.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 272

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 8/256 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  ++    ++R           GV  +  AL         LL +++    L     L
Sbjct: 19  RDYTALKDVQLRARREPAEGLYLAEGVEVIRRALAAGHVP-RSLLLSRSRFEDLADV--L 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVND 143
           P    V   P      + G +     LA    P      D +         L+VL+ V D
Sbjct: 76  PAGATVFVAPVAAFADLTGVDLHRGALASMQRPAQRSVPDLLASLPAGPARLVVLEDVVD 135

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GA+ RSA AF  DG++ + R +        + + G + H+P+ R ++    L  + 
Sbjct: 136 HTNVGALFRSAAAFGVDGVVVSPRCADPLYRRSVRVSMGTVLHLPWARAASWPGDLDLLR 195

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           S GF    L+  +    L      +++AL+LG EG GL  +    A  +  + M   + +
Sbjct: 196 SAGFAVAALALTEDSVALGSFAVPERLALLLGTEGDGLSRRALSGADLVVRIPMDPRVDS 255

Query: 263 LNVSNAAAVALYITQN 278
           LNV+ A+AVAL+ T+ 
Sbjct: 256 LNVAAASAVALWETRR 271


>gi|320535491|ref|ZP_08035597.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
           F0421]
 gi|320147683|gb|EFW39193.1| RNA methyltransferase, TrmH family, group 3 [Treponema phagedenis
           F0421]
          Length = 255

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 24/252 (9%)

Query: 49  LFLYGVHTVSAALNN---PSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDK 103
           + + G H++   L       R    L   K+   R+           V+ +      +D 
Sbjct: 2   IIISGFHSIEERLRASTAEERSGITLYYAKSG-PRVKKIIAQAGQLGVQCIQSTDAQLDS 60

Query: 104 IVGKE----AVHQGLALETAPLLSP-------TLDAV------RNSQLLMVLDHVNDPHN 146
           +          H+G+ L      S        +++ +      + S L+++ D + DPHN
Sbjct: 61  MASSLPESLRAHRGVLLTAEKKESAKGSVSSISIEEIFAAVRKKESALILMADSITDPHN 120

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI+RSA  F  D +I  +R+S  +S ++AK ++GA   +P I + NL    ++    G
Sbjct: 121 IGAIVRSADQFGVDAVIVPQRHSAGDSEIIAKISAGATAWVPLIEVPNLVRTAEQCKKEG 180

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           F   G  +  + P+ +     K  LILG+EG G+    +    S+  +   G + +LNVS
Sbjct: 181 FWVYGADASGE-PIGKLSFPQKTLLILGSEGSGIARLLKNCCDSLIAIPTRGKLDSLNVS 239

Query: 267 NAAAVALYITQN 278
            AA + LY  + 
Sbjct: 240 VAAGILLYEIRR 251


>gi|329947308|ref|ZP_08294575.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328525525|gb|EGF52569.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 332

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 116/260 (44%), Gaps = 14/260 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLP 88
           +  Q    K R      +  L G + V+ A    S  I ++    +  +  RL       
Sbjct: 65  RAKQLEKLKRRFDVPEGHEILCGRNAVAEA-AYASVPITRVFMAVSAQSDERLGAVVRRA 123

Query: 89  H--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----PTLD---AVRNSQLLMVLD 139
                PV       +D +    A HQG+A+E            LD   ++  + LL+ LD
Sbjct: 124 ALLGAPVLETTRLDLDALTDS-AAHQGVAIEVPAYEYTTARDLLDRARSLERTPLLVALD 182

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DPHN+GA+LRSA AF  DG+I  +R S   +A + K ++GA   +   R +NL  AL
Sbjct: 183 QVTDPHNLGAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRAL 242

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +++   G   +GL       +E     D  + L+ GAEG GL    +ET   +A + +  
Sbjct: 243 EQVKREGCFVVGLDGSGSTDIEDLTLADSPLVLVTGAEGAGLSRLVRETCDVLASVPISR 302

Query: 259 IIKALNVSNAAAVALYITQN 278
            +++LN + A  ++LY    
Sbjct: 303 SVESLNAAVATGISLYEVDR 322


>gi|153855701|ref|ZP_01996715.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
 gi|149751924|gb|EDM61855.1| hypothetical protein DORLON_02733 [Dorea longicatena DSM 13814]
          Length = 289

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 9/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      ++   +           +S AL+     +  L+  K  L   +  A L  
Sbjct: 31  YARLTEAQLLNKDHPEDGLFIAESPKVISRALDGGYELVSVLVEKKQVLEDAETIAVLGK 90

Query: 90  --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV T   + + K+ G +     L       L    +       + VL++V +P N+
Sbjct: 91  CGNVPVYTAEFEVLTKLTGFKLTRGMLCAMKRRRLPGLQEICSGCDRIAVLENVMNPTNV 150

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN----LTDALQKMH 203
           GAI RSA A   D +I T   S       ++ + G +  IP+  + N      + ++ + 
Sbjct: 151 GAIFRSAAALHMDAVILTGGCSNPLYRRASRVSMGTVFQIPWTFVDNSVIWPEEGMKILR 210

Query: 204 SWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             GF+T  ++     +     + +K DK+A+ILG EG GL P+T         + M   +
Sbjct: 211 ELGFKTAAMALKEDSASIDDPELMKEDKLAVILGTEGDGLAPETIADCDYTVMIPMSHGV 270

Query: 261 KALNVSNAAAVALYIT 276
            +LNV+ A+AVA +  
Sbjct: 271 DSLNVAAASAVAFWQL 286


>gi|259503594|ref|ZP_05746496.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259168418|gb|EEW52913.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 257

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 111/272 (40%), Gaps = 18/272 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E++ S+ + H        +++KK+Q+     +   Q     L G H V+ A+      + 
Sbjct: 2   EELTSVHNQHV-------KNWKKLQT----KKFRRQRGEYLLDGWHLVNEAVKAGIL-LR 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL+ T + L       +         V P+ +  I  +    QG+A       +  + A 
Sbjct: 50  QLIGTADQLTAHRELVDRAAEA--YVVTPEIMQHIT-ETVTPQGIAAIVDLPDAHRVPAN 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD V DP N+G ++R+A A    G++   R +      + +S  G+  H+  
Sbjct: 107 IQGA-WLLLDRVQDPGNVGTMVRTADAAGFAGVVVGNRSADLFGPKVVRSMQGSQFHLTL 165

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETA 248
           +   +L   +Q     G    G   +      +++      ALI+G EG+G+        
Sbjct: 166 LE-GDLHKWVQDFKRIGAPVYGTQLNPAAQNFRKVHPGPTFALIMGNEGQGMAADLLAET 224

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T+  ++ M G  ++LNV+ +A + ++      
Sbjct: 225 TTNLYIPMRGDAESLNVAVSAGILMFQLNQEL 256


>gi|251781823|ref|YP_002996125.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390452|dbj|BAH80911.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 245

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 14/232 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A     +    +   +    R      +     V  V    + ++
Sbjct: 23  RQHSYLIEGWHLFEEA-QQSGQGFRHIFVLEELAER------VADQEKVVLVSADVLKEL 75

Query: 105 VGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
               +  QG+  E   P L+   D        ++L+ V DP N+G I+R+A A   DG+ 
Sbjct: 76  TDSPS-PQGIIAEVDMPQLAFPTDYQGK---YLILEDVQDPGNLGTIIRTADAAGFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQ 222
            +++ +   ++   +S  G+  H+P  R +++    ++M       +  +        + 
Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLPIWR-TDIYKICREMQEHNTPVLATTLSKVSVDYKT 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  AL++G EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 191 VPHQESFALVMGNEGQGISAEMTTLADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443727|gb|EDP20732.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
           M21/2]
          Length = 260

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 99/259 (38%), Gaps = 8/259 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
               R +   K        +            G             ++  L  T+NAL +
Sbjct: 4   KITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--ARGAELETLFYTENALEK 61

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               A LP       V     DK+      HQG+          TL+ VR     + L+ 
Sbjct: 62  CPELAALPGEH--YLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVRPGGRYLALER 117

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G +LRSA AF  DG+I ++  +   +    +++ GA   IP I    +  A+ 
Sbjct: 118 VQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIPVIETGAMPQAIT 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +   G   +  +    +PL          + +++G+EG+GL  +T     S   + M  
Sbjct: 178 LLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAACNSTVRIPMTD 237

Query: 259 IIKALNVSNAAAVALYITQ 277
            +++LN   A ++ L+  +
Sbjct: 238 RVESLNAGIAGSILLWHFR 256


>gi|291525521|emb|CBK91108.1| rRNA methylases [Eubacterium rectale DSM 17629]
          Length = 263

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 95/258 (36%), Gaps = 6/258 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +Q+   K++   +     + G      A   P   +  +  +++      +  
Sbjct: 6   SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFNYDRFKE 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDP 144
                     +    + K +      QG+            +  +  +  L+VL+ + DP
Sbjct: 63  EKKRFLDKTEIVSDAVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+       GII  +      +    +S  G+L  +P+    +L + ++   S
Sbjct: 123 GNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G          K   ++         ++G EG GL  +  + A +   + M G +++LN
Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242

Query: 265 VSNAAAVALYI--TQNHF 280
            + +A + +Y    Q   
Sbjct: 243 AAISATLLMYECNRQRRL 260


>gi|296169646|ref|ZP_06851264.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295895643|gb|EFG75339.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 277

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 107/253 (42%), Gaps = 6/253 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +       LL T   LA L  D     
Sbjct: 24  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLAS-RFTAHALLGTDRRLAELAGDLA-GR 81

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P      + + ++VG       LA             V  ++ + VL+ VND  N+G+
Sbjct: 82  AVPFYRTSAEVMAQVVGFHLNRGVLAAARRVPEPTVAGLVEGARTVAVLEGVNDHENLGS 141

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R+A     D ++     +        + + G    +PY R ++    L+ +   GF+ 
Sbjct: 142 IFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELKMLKQKGFRV 201

Query: 210 IGLSSDSKK-PLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + ++ DS    L + +   ++++IA+++GAEG GL P T   + +   + M     +LNV
Sbjct: 202 LAMTPDSTACALPEAMAAARDERIAVVVGAEGPGLTPATLRLSDARVRIPMSRGTDSLNV 261

Query: 266 SNAAAVALYITQN 278
           + AAA+A Y    
Sbjct: 262 ATAAALAFYERAR 274


>gi|319956873|ref|YP_004168136.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319419277|gb|ADV46387.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 270

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 16/267 (5%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           K+S +   R     Y++ +SF +K         L +YG + V  AL +PS +I +L  ++
Sbjct: 4   KNSTHNAQRTTLVSYEEKKSFYEK--------VLTIYGRNPVLEALEDPSLQIHRLHLSE 55

Query: 76  NALARLDWD----ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           +       D            ++T   + + +I       QG+AL+       T DA  N
Sbjct: 56  SNKPSKQLDRMVALAKKRGIEIRTHEKKALSRISKNSRQDQGVALDVVLENLTTPDAFLN 115

Query: 132 SQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHI 187
                 L+ LD V +P N+G I+RS  A   DGI+ + K  +P  S +  K+++G L  I
Sbjct: 116 EHKRFRLIALDRVTNPQNVGMIIRSCAAGRIDGIVMSAKGNAPLVSPLTIKASAGTLFKI 175

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P IR  +L   L+     G +   L S +     +     +   ILG E +G+ P+    
Sbjct: 176 PIIRADSLLGTLRLFREAGAKLYTLDSHASTDYRKLDPTSREVFILGNESEGVSPEIAAL 235

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     + M   +++LNV+  A++  +
Sbjct: 236 SDERIAIPMNRGVESLNVAVTASLLAF 262


>gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
 gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
          Length = 269

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 103/262 (39%), Gaps = 11/262 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLDW 83
            +   K + +  QKS    +     + G   V   +   +   +I  L   ++ L +   
Sbjct: 11  QNAKVKNLVALQQKSSERRKQGLFVVEG---VRELIHCAHAGYEIENLFCCRDILDKNPE 67

Query: 84  DANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLD 139
              L        +  V     +K+  + +  +G+  E         D  +  S L++VL+
Sbjct: 68  AWKLDSLIGQTTIYEVTQAVYEKMAYRGST-EGMMAEVKVKNRTLADLDLPESPLIVVLE 126

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GA+LRSA A   D +I     +   +  L +S+ GA+  +P +  S+    +
Sbjct: 127 SVEKPGNLGAVLRSADASKADAVIVCNPLTDLFNPNLIRSSIGAIFTVPTVACSSQA-CM 185

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +     + +        P          A+++G E  GL    ++ A +   + M G 
Sbjct: 186 NFLKERNIKILTAQLQDSAPYYDSDMRGGTAIVMGTESTGLTDAWRKAADAHIRIPMLGQ 245

Query: 260 IKALNVSNAAAVALYITQNHFA 281
           + +LNVS +AA+ ++      +
Sbjct: 246 LDSLNVSVSAAILMFEAVRQRS 267


>gi|307290546|ref|ZP_07570458.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0411]
 gi|306498401|gb|EFM67906.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0411]
          Length = 258

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  K+ ++   K  H  K R                    +     + G H V  A
Sbjct: 1   MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +  +    QG+      
Sbjct: 42  VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +    ++      ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 99  LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++   LT+ +Q     G    G    ++     ++   +  ALILG EG G
Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVEIYALILGNEGSG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 261

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 8/256 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLD 82
           +   K +++  Q+ +   +     + G+  V+ A+   +  +  L+     L    A   
Sbjct: 8   NPTIKALRALRQR-KARDEQGRYLIEGIRPVAEAIQCGA-PLDMLVVAPELLNSSFAHEL 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            D        + TV       +  K+   QGLA       +P  +        +VL  V 
Sbjct: 66  IDTYAAGGGKILTVSAAVFSSLADKD-NPQGLAAVGRIHYTPLPNLSPAPVGWVVLVEVA 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+A      G+I     +        +++ GAL      R ++  D L   
Sbjct: 125 DPGNLGTILRTADGAGFSGVILVGATTDPFDPAAVRASMGALFSQQIAR-TSWPDLLTWA 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +G S               + L+LG+E  GL  +       +  + M G   +
Sbjct: 184 RQHRIALVGSSDRGASDYRATTYPRPLLLVLGSERHGLTDEQLAACDLVVRIPMRGRSDS 243

Query: 263 LNVSNAAAVALYITQN 278
           LN++ AA + +Y    
Sbjct: 244 LNLAVAAGILMYEATR 259


>gi|323351009|ref|ZP_08086666.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
 gi|322122733|gb|EFX94442.1| SpoU rRNA methylase [Streptococcus sanguinis VMC66]
          Length = 246

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 99/231 (42%), Gaps = 12/231 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A+ +   ++ ++ A        ++   L     V  V P+ +  +
Sbjct: 24  RKDSYLIEGWHLFEEAV-SSGEELIRIFAL------AEYAERLADFSQVIFVSPEILADL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A         +    L   L+ V DP N+G I+R+A A   DG+  
Sbjct: 77  ADS-KTPQGIVAEVAFEREEIPAELSGRYLF--LEDVQDPGNVGTIIRTADAAGFDGVFI 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE 223
           +   +   +    +S  G+  H+P  R+ + +D ++   S     +  +  S      + 
Sbjct: 134 SSASADIYNLKTLRSMQGSHFHLPVYRM-DTSDFIRLARSSSLPILASTLSSTSIDYREV 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +   L++G EG+G+ P+    A  + H+ M G  ++LNV+ AA + ++
Sbjct: 193 VSKESFVLVMGNEGQGISPEMTVAADILVHISMKGQAESLNVAVAAGILIF 243


>gi|194333376|ref|YP_002015236.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
           aestuarii DSM 271]
 gi|194311194|gb|ACF45589.1| RNA methyltransferase, TrmH family, group 3 [Prosthecochloris
           aestuarii DSM 271]
          Length = 243

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 11/242 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
           N  +YG ++V   LN    +I ++      + N L  +   A   H   V     + + +
Sbjct: 2   NNVVYGRNSVLELLNATPERIEKIYFQFNTSHNKLKEITITARR-HRIAVGKARLEKLSE 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSAVAFS 158
           I G    HQG+    + +    ++ +       + L+++L  + DP+NIGAI+RSA A +
Sbjct: 61  IAGTTK-HQGVCALISTINYYDIEEILEKPRNSNPLIVILPGLQDPYNIGAIIRSAEAVA 119

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++  +      +A + K+++GAL H+   ++ +L   L+ + S  FQ +     +++
Sbjct: 120 ADAVVLVEGKGSPVNATVHKASAGALPHMRVCKVKSLKKCLELLRSKKFQIVAADMHAER 179

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                      ALI+G EG+GL     E   ++  L M G I++LNVS  A V LY    
Sbjct: 180 NYTDIDFTRPSALIMGEEGRGLGTGLLEEQDAIVRLPMAGCIESLNVSVTAGVLLYEAMR 239

Query: 279 HF 280
             
Sbjct: 240 QR 241


>gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
          Length = 260

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 99/259 (38%), Gaps = 8/259 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
               R +   K        +            G             ++  L  T+NAL +
Sbjct: 4   KITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--ARGAELETLFYTENALEK 61

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               A LP       V     DK+      HQG+          TL+ VR     + L+ 
Sbjct: 62  CPELAALPGEH--YLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEVRPGGRYLALER 117

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G +LRSA AF  DG+I ++  +   +    +++ GA   IP I    +  A+ 
Sbjct: 118 VQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMGAAVRIPVIETGAMPQAIA 177

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +   G   +  +    +PL          + +++G+EG+GL  +T     S   + M  
Sbjct: 178 LLREKGITCLAAALYQSQPLSAAKAGYPGGVCVVIGSEGQGLTDETIAACNSTVRIPMTD 237

Query: 259 IIKALNVSNAAAVALYITQ 277
            +++LN   A ++ L+  +
Sbjct: 238 RVESLNAGIAGSILLWHFR 256


>gi|291528371|emb|CBK93957.1| rRNA methylases [Eubacterium rectale M104/1]
          Length = 263

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 96/258 (37%), Gaps = 6/258 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +Q+   K++   +     + G      A   P   +  +  +++      +  
Sbjct: 6   SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFYDDRFKE 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDP 144
                     +   ++ K +      QG+            +  +  +  L+VL+ + DP
Sbjct: 63  EKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+       GII  +      +    +S  G+L  +P+    +L + ++   S
Sbjct: 123 GNLGTMIRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G          K   ++         ++G EG GL  +  + A +   + M G +++LN
Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242

Query: 265 VSNAAAVALYI--TQNHF 280
            + +A + +Y    Q   
Sbjct: 243 AAISATLLMYECNRQRRL 260


>gi|315146678|gb|EFT90694.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX4244]
          Length = 258

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 112/280 (40%), Gaps = 24/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  K+ ++   K  H  K R                    +     + G H +  A
Sbjct: 1   MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +  +    QG+      
Sbjct: 42  VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +     +      ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 99  LETQQEQLLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++   LT+ +Q     G    G    ++     ++   +  ALILG EG G
Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|295091750|emb|CBK77857.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
          Length = 274

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 103/245 (42%), Gaps = 8/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P          +  AL+     I  L+ TK+   +           PV T     +
Sbjct: 30  YEPEPGIFIAESPKVIERALDAGYEPISLLMETKHVEGQGREVIARCGHIPVYTAQFDVL 89

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++ G +     L       +         ++ ++VL++V +P N+GAI RSA A   D 
Sbjct: 90  TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 149

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQKMHSWGFQTIGLS-SD 215
           ++ T   S        + + G +  IP+      ++    +  + +   GF+T  ++ SD
Sbjct: 150 VLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 209

Query: 216 SKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               +++      +K+A+I+G EG+GL  +T   +  +  + M   + +LNV+ A+AVA 
Sbjct: 210 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 269

Query: 274 YITQN 278
           +    
Sbjct: 270 WQLGR 274


>gi|310658445|ref|YP_003936166.1| RNA methyltransferase, trmh family [Clostridium sticklandii DSM
           519]
 gi|308825223|emb|CBH21261.1| RNA methyltransferase, TrmH family [Clostridium sticklandii]
          Length = 261

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/250 (21%), Positives = 110/250 (44%), Gaps = 5/250 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++  YK   S  Q S++  + +     G+  V  A+ NP   I+ +   ++ +    +  
Sbjct: 8   DNPKYKLAMSLMQ-SKYRKKNQMFLAEGLRNVELAIENPK-TIYLIFIQEDRINEPRYSN 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            + +      V P  + + +      QG+        S  +D +  +  +++LD + DP 
Sbjct: 66  IIKNTGDKSFVVPSKLMETISDTVTSQGIVA-ICNFESFMIDDIDFNNDILILDKIQDPG 124

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+A A     +I TK  +   S+ + +SA G+L H+  + I +  ++L  +   
Sbjct: 125 NLGTILRTADAAGISTVICTKGTTDIYSSKVVRSAMGSLMHLKILFIDDY-ESLNILKKN 183

Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            ++ I  S ++            K+A++LG E  G+  K    +     + + G  ++LN
Sbjct: 184 DYKIISSSLENALDYNVLSTIQSKVAIVLGNEANGIDDKLLNLSDIKVKIPLYGAAESLN 243

Query: 265 VSNAAAVALY 274
           V  A  + +Y
Sbjct: 244 VGIAGGILMY 253


>gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
          Length = 259

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 104/270 (38%), Gaps = 18/270 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI S +++      R                           G             ++ 
Sbjct: 2   EKITSRENAKVKYACR----------LASSGAFRRAEGRFLAEGRKLCPELCRGA--ELE 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L  T++AL +    + LP       V     DK+      HQG+          TL+ V
Sbjct: 50  TLFCTESALEKCPELSELPGEH--YLVEDHVADKLAD-VGTHQGV-FGVFRTPVHTLEEV 105

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     + L+ V DP N+G +LRSA AF  DG++ +   +   +    +++ GA   IP 
Sbjct: 106 KTGGRYLALERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRIPV 165

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQET 247
           I    + +A+  +   G   +  +    +PL        D + +++G+EG+GL  +T   
Sbjct: 166 IEAGKMPEAIALLREKGITCLAAALYQSQPLSAAASSYPDGVCVVIGSEGQGLTDETIAA 225

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            T    + M   +++LN   A ++ L+  +
Sbjct: 226 CTGTVRIPMTDRVESLNAGIAGSILLWHFR 255


>gi|68535913|ref|YP_250618.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68263512|emb|CAI37000.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 285

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96
           ++    +     + G ++V AA+   S     +  T  A  R +            V  +
Sbjct: 29  RAAARKKAGVFLVEGENSVEAAIATGSAT--DVYVTLAAAERFEPIIRTAGYLNIYVHYI 86

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAV 155
                 K +   A   GL     P+L      +    +L+ V    NDP N G ++R A 
Sbjct: 87  T-DKAAKHLSDTATTTGLFAVCKPVLWSVGKVLTPQPRLVSVPVETNDPGNAGTLIRVAD 145

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D ++     +  +S   A++++G+L H+P  R +N+ D L ++ + G Q +  ++D
Sbjct: 146 AMGADAVVFVGETADPQSCKAARASAGSLFHVPVARSTNVKDVLGQLRAQGMQILATAAD 205

Query: 216 SKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  L+   EI     A + G E  GL  +    A     + + G  ++LN++ AA++ +
Sbjct: 206 GEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADLRVSIPIRGRAESLNLATAASICM 265

Query: 274 YITQN 278
           Y +  
Sbjct: 266 YESSR 270


>gi|295114857|emb|CBL35704.1| rRNA methylases [butyrate-producing bacterium SM4/1]
          Length = 281

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 103/245 (42%), Gaps = 8/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P          +  AL+     I  L+ TKN   +           PV T     +
Sbjct: 37  YEPEPGIFIAESPKVIERALDAGYEPISLLMETKNVEGQGREVIARCGHIPVYTAQFDVL 96

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++ G +     L       +         ++ ++VL++V +P N+GAI RSA A   D 
Sbjct: 97  TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 156

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQKMHSWGFQTIGLS-SD 215
           ++ T   S        + + G +  IP+      ++    +  + +   GF+T  ++ SD
Sbjct: 157 VLLTLGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 216

Query: 216 SKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               +++      +K+A+I+G EG+GL  +T   +  +  + M   + +LNV+ A+AVA 
Sbjct: 217 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 276

Query: 274 YITQN 278
           +    
Sbjct: 277 WQLGR 281


>gi|320533712|ref|ZP_08034329.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320134073|gb|EFW26404.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 264

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 14/252 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL--ATKNALARLDWDANLPH--PFPVK 94
           K R      +  L G + V+ A    S  I ++    +  +  RL            PV 
Sbjct: 11  KRRFDVPEGHEILCGRNAVAEA-AYASVPITRVFMAVSAQSDERLGAVVRRAALLGAPVL 69

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQLLMVLDHVNDPHNI 147
                 +D +    A HQG+A+E       T         A+  + LL+ LD V DPHN+
Sbjct: 70  ETTRLDLDALTDS-AAHQGVAIEVPAYEYTTARDLLERARALGRTPLLVALDQVTDPHNL 128

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+LRSA AF  DG+I  +R S   +A + K ++GA   +   R +NL  AL+++   G 
Sbjct: 129 GAVLRSAGAFGADGVIIPERRSVGVNATVWKVSAGAAARVRVARETNLVRALEQLKKEGC 188

Query: 208 QTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             +GL       +E     D  + L+ GAEG GL    +ET   +  + +   +++LN +
Sbjct: 189 FVVGLDGSGSTAVEDLTLADSPLVLVTGAEGAGLSRLVRETCDVLVSVPISRSVESLNAA 248

Query: 267 NAAAVALYITQN 278
            A  ++LY    
Sbjct: 249 VATGISLYEVDR 260


>gi|228937394|ref|ZP_04100040.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970280|ref|ZP_04130939.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976850|ref|ZP_04137262.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
 gi|228782820|gb|EEM30986.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis Bt407]
 gi|228789389|gb|EEM37309.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822227|gb|EEM68209.1| tRNA/rRNA methyltransferase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 161

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 80/152 (52%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +        ++LD + DPHN+G+I+R+A A    GII  KR +   +A +AK+++GA+E+
Sbjct: 3   EKRNEDPFFLILDEIEDPHNLGSIMRTADATGAHGIIIPKRRAVGLTASVAKASTGAIEY 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IP  R++NL+  + ++   G    G  +  K           I L++G+EGKG+     E
Sbjct: 63  IPVARVTNLSRTIDELKERGLWIAGTDAKGKTDYRNLDGKMPIGLVIGSEGKGMSRIIGE 122

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +  L M G + +LN S AA++ +Y    
Sbjct: 123 KCDFLITLPMVGKVTSLNASVAASLLMYEVYR 154


>gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
 gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
          Length = 261

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 108/264 (40%), Gaps = 11/264 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
                R++  YK +   +  +R   +     L G H + A L+N  +    LL  + A  
Sbjct: 5   KRITSRDNPFYKSLHRISSSARERREAGQTLLDGSHLLRAFLDNGGKPKH-LLLNEQAQQ 63

Query: 80  RLDWDANLPHPFPV-KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A L     V +T     +   + +     GL       +      V +SQ  ++L
Sbjct: 64  DAEIVALLDACVDVPQTQFEDALFAQLSELKTPNGLLALID--IPAAQVEVAHSQFALLL 121

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + + DP N+G+ILRSA A  CD +  +   + + S  + ++  G    +  +  ++L   
Sbjct: 122 EDIQDPGNLGSILRSAAAAGCDAVFMSPGCADAWSPKVLRAGMGGHFALSILESADLLKV 181

Query: 199 LQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
                + GF  + +  S  ++K L       K+A  +G EG GL P+    A     + M
Sbjct: 182 -----ATGFTGKILAASLHARKSLYDCNLRGKLAFAIGNEGAGLSPELLTAAQQHFIIPM 236

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
            G I++LN + A AV L+      
Sbjct: 237 QGKIESLNAAAATAVCLFEASRQR 260


>gi|238924067|ref|YP_002937583.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
 gi|238875742|gb|ACR75449.1| hypothetical protein EUBREC_1705 [Eubacterium rectale ATCC 33656]
          Length = 302

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 104/284 (36%), Gaps = 35/284 (12%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +R   +           +  AL+     +  L+ TK+             
Sbjct: 19  YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + K+ G       L     P      +  R+++ + VL+ V +P N+GA
Sbjct: 79  NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--------NLTDA--- 198
           I RSA A   D ++ T   S        + + G +  +P+              +DA   
Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198

Query: 199 ---------------------LQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILG 234
                                +  +H  GF+T  ++  D    ++  +    +++A++LG
Sbjct: 199 DKCDSSDQNCSDRNSSAYKYYIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLG 258

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            EG GL  +T ++      + M   + +LNV+ A+AVA +    
Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302


>gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 261

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 8/256 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLD 82
           +   K +++  Q+ +   +     + G+  V  A+   +  +  ++   + L    A   
Sbjct: 8   NPTIKMLRALRQR-KARDEQGRYLIEGIRLVGEAIQCGA-PLEMIIVAPDLLTSSFAHEL 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            +  +     V TV  + +  +  KE   QG+        +P  D V      + L  V 
Sbjct: 66  VEHYIAGGGRVLTVSAEVLGSLASKE-HPQGIIGVGRARYTPLADLVAGVNGWVALVDVA 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+A      G+I              +++ GAL      R     + L   
Sbjct: 125 DPGNLGTILRTADGAGFSGVILIGSTVDPFDPAAVRASMGALFSQQIARAG-WDELLAWR 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +     IG S               + L+LG+E +GL  +      ++  + M G   +
Sbjct: 184 QARSLPVIGSSDRGTVDYRTATYPRPLILVLGSERQGLSDEQLAACDTVVRIPMRGRSDS 243

Query: 263 LNVSNAAAVALYITQN 278
           LN++ AA + +Y    
Sbjct: 244 LNLAVAAGILMYEITR 259


>gi|256956680|ref|ZP_05560851.1| rRNA methylase [Enterococcus faecalis DS5]
 gi|300860699|ref|ZP_07106786.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
           Ef11]
 gi|256947176|gb|EEU63808.1| rRNA methylase [Enterococcus faecalis DS5]
 gi|300849738|gb|EFK77488.1| RNA methyltransferase, TrmH family [Enterococcus faecalis TUSoD
           Ef11]
 gi|315035621|gb|EFT47553.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
           faecalis TX0027]
          Length = 258

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 111/279 (39%), Gaps = 24/279 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  K+ ++   K  H  K R                    +     + G H +  A
Sbjct: 1   MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +  +    QG+      
Sbjct: 42  VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +     +      ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 99  LETQQEQLLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++   LT+ +Q     G    G    ++     ++   +  ALILG EG G
Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + P+     T   ++ M G  ++LNV+ AA V ++  +N
Sbjct: 218 VSPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFEN 256


>gi|288931919|ref|YP_003435979.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
           DSM 10642]
 gi|288894167|gb|ADC65704.1| RNA methyltransferase, TrmH family, group 3 [Ferroglobus placidus
           DSM 10642]
          Length = 224

 Score =  198 bits (505), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 18/233 (7%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ 112
           GV++++ AL      + ++   ++   R+           V  V  + + K         
Sbjct: 5   GVNSIAEALKAG--VVNKIYVGEHINPRVAKILAEAKKQKVPIVKVKNLKK--------- 53

Query: 113 GLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            +  + +P+     D     A+R +  ++ LD V DP N+GA+LR+A  F C G++  KR
Sbjct: 54  -IEADVSPVKYYDFDFVVEKALRENGFILFLDSVQDPQNLGAVLRTAEFFGCSGVVIPKR 112

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +   +  + + + GA  H+   R+ NL ++++K+  +GF  +G      K L       
Sbjct: 113 RAAQVTETVVEVSQGAAFHLKISRVENLANSIKKIKKYGFLVVGAEI-GGKDLRSVKFTP 171

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +AL++G E +G+    ++    +  +   G   +LN+S AA + LY  + H 
Sbjct: 172 PLALVVGGEDRGISQPVKKMCDFLVEIKGVGKTPSLNLSVAAGILLYEVRRHL 224


>gi|94969640|ref|YP_591688.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551690|gb|ABF41614.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
          Length = 285

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 4/269 (1%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           S  D       R +   K++++     R T    +  + GVH +  A+ +  R    +  
Sbjct: 18  SPNDRLRLITSRQNNAVKELRAAFHTGRPTDDGYSA-VEGVHLLEEAIRSGLR-FKTIFF 75

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NS 132
           ++ A  R        H      + P  +          QG+A           D +R  +
Sbjct: 76  SQAAEDRAGKLLPQIHSNVETLLLPDEVFSSAVLTESPQGVAALVKLKTFKLEDLLRAEN 135

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +L+ +  V DP N+G ILRSA AF   G++   + +   +  + + +SG++  +P +++
Sbjct: 136 PMLLGVAGVQDPGNLGTILRSAEAFGATGVLIGDKTASPWNPKVIRGSSGSVFRLPVVKV 195

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                AL+++ + G Q +  SS   +PL +        +++G EG G+      +     
Sbjct: 196 E-WPAALEQLRAKGVQILATSSHKGEPLPEVDFTGPTIVLIGGEGAGVPRDVLASVDGTL 254

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +     +++LN   AA++ +Y       
Sbjct: 255 AIPHSPKVESLNAGIAASIVMYEAARQRN 283


>gi|116492486|ref|YP_804221.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116102636|gb|ABJ67779.1| rRNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 255

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 23/269 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI S K+S         +++ K+++ N + +         L G H V  AL   +   F
Sbjct: 2   EKISSTKNSKV-------KEWVKLKTNNGRKKFKK----FLLEGRHPVETALEQATEYEF 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH-QGLALE--TAPLLSPTL 126
            ++     L  L    +         V  +  + I   + VH QG+ L            
Sbjct: 51  LIVQEDFDLGELAEQVDNDKLI---LVTKEVANHIS--DTVHDQGIFLIGYINEEDWQFP 105

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +      +VLD+V DP NIG ++R+A A    G++     +   +  + ++  G+  H
Sbjct: 106 DDLSGK--WLVLDNVQDPGNIGTMVRTADAAGFTGVVFGDGTADFYNPKILRAMQGSQYH 163

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   R+ NL   ++     G    G   D + +   +    D+ +LI+G EG G+  +  
Sbjct: 164 LQLKRL-NLEKWIRNCKDQGSVIFGSILDENARDYRKIDVPDQFSLIMGNEGNGMSERLI 222

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E      ++ + G  ++LNV+ AA V ++
Sbjct: 223 EMTDMNLYIPIKGSAESLNVAVAAGVLMF 251


>gi|315611869|ref|ZP_07886788.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296]
 gi|315316047|gb|EFU64080.1| SpoU rRNA methylase [Streptococcus sanguinis ATCC 49296]
          Length = 246

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 107/275 (38%), Gaps = 33/275 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +   + LD  A  P       V  + +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKVFALE---SYLDQLAAFPQTV---WVSEEILLDLADTQ-TPQGIVAVIQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D  +   L   L+ V DP N+G ++R+A A    G+I + + +   S    +S 
Sbjct: 92  EEVGLPDFRQGKYLF--LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSM 149

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P  R+  +   + +        +  + S   K   +    +   L++G EG+G
Sbjct: 150 QGSHFHLPIYRMP-VATFVVEAKKSNLPFLATTLSRDSKDYRELSSLENFVLVMGNEGQG 208

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 209 ISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 243


>gi|126437415|ref|YP_001073106.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126237215|gb|ABO00616.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 270

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   + +       LL T   L  L  D +  
Sbjct: 17  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTP-RALLGTDRRLTELGTDLD-A 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + ++VG       LA  + P      DA+  ++ + VL+ VND  N+G
Sbjct: 75  VDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARAVAVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D +I     +        + + G    +P+ R +   D L  +   GFQ
Sbjct: 135 SIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALMVPFARAATWPDELNTLRDKGFQ 194

Query: 209 TIGLSSD-SKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++ D +   L      +  +K+A ++GAEG GL  +    +     + M     +LN
Sbjct: 195 LLAMTPDPAADTLATAMTALAGEKVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTDSLN 254

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 255 VATAAALAFYERVR 268


>gi|300173701|ref|YP_003772867.1| putative TrmH family tRNA/rRNA methyltransferase [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299888080|emb|CBL92048.1| Putative trmH family tRNA/rRNA methyltransferase TRMHL [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 257

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 114/275 (41%), Gaps = 25/275 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I   ++ ++ +       K R+ +R Y                    L G H V  A
Sbjct: 1   MDRILSNQNNRVKAWAKLATKKGRQENRTY-------------------LLDGWHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   + K   ++AT+  +       ++PH  P   +  +    I G     QG+  E + 
Sbjct: 42  VKANA-KFHAVMATEEQMQ--THLPDVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEISL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  +  +    ++LD + DP N+G ++R+A A    G++  +  + + S  + ++ 
Sbjct: 98  PDKTFDPSYVHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVFGEGTADAYSPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+  +   +L +    + +      G    +S +   +   + + ALI+G EG+G
Sbjct: 158 QGSQFHLEVL-TGDLVEWTDALTANNLSVYGSQLNESARSYREIESSTQFALIVGNEGQG 216

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +     T+  ++ + G  ++LNV+ A  + ++
Sbjct: 217 MSDELAAKTTANLYIPIQGQAESLNVAIAGGILMF 251


>gi|291528877|emb|CBK94463.1| rRNA methylases [Eubacterium rectale M104/1]
          Length = 302

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 104/284 (36%), Gaps = 35/284 (12%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++      +R   +           +  AL+     +  L+ TK+             
Sbjct: 19  YARLTENQLLNRANPKEGMFIAESPKVIERALDAGCEPVSLLMETKHVNGEARGIIERCQ 78

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T     + K+ G       L     P      +  R+++ + VL+ V +P N+GA
Sbjct: 79  NIPVYTASFDLLTKLTGFALTRGTLCAMYRPKPRSVEEVCRDARRVAVLEDVVNPTNVGA 138

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--------NLTDA--- 198
           I RSA A   D ++ T   S        + + G +  +P+              +DA   
Sbjct: 139 IFRSAAALHMDAVLLTPACSNPLYRRAIRVSMGTVFQVPWAYFPKYNVGSDNTFSDASLH 198

Query: 199 ---------------------LQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILG 234
                                +  +H  GF+T  ++  D    ++  +    +++A++LG
Sbjct: 199 DKCDSSDQNCSDRNSSVYKYNIDVLHKLGFKTCAMALTDDSVSIDDPVLHSEERLAIVLG 258

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            EG GL  +T ++      + M   + +LNV+ A+AVA +    
Sbjct: 259 TEGDGLHEQTIDSCDYTVKIPMSHGVDSLNVAAASAVAFWELAK 302


>gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122]
 gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122]
          Length = 246

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKIGLALIEGVHLIEEAYQSGI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVTYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11]
 gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46]
          Length = 246

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|238923439|ref|YP_002936955.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
           ATCC 33656]
 gi|238875114|gb|ACR74821.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium rectale
           ATCC 33656]
          Length = 263

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 96/258 (37%), Gaps = 6/258 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +Q+   K++   +     + G      A   P   +  +  +++      +  
Sbjct: 6   SNKSIKNVQALLSKAKERKKQGVFVVEGPKMSFEA---PYDWVSAVYMSESFFNDDRFKE 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDP 144
                     +   ++ K +      QG+            +  +  +  L+VL+ + DP
Sbjct: 63  EKKRFLDKTEIVSDSVFKSMSDTQTPQGVLAIVKMPHYEIDELFKGDKTELLVLESIQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+       GII  +      +    +S  G+L  +P+    +L + ++   S
Sbjct: 123 GNLGTMVRTGEGAGVSGIIMNRTTVDIFNPKTVRSTMGSLYRVPFYITDDLPETIEYAKS 182

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G          K   ++         ++G EG GL  +  + A +   + M G +++LN
Sbjct: 183 KGVSLYAAHLKGKCSYDRPDYTGACGFMIGNEGNGLSDEIADMADTYIRIPMEGAVESLN 242

Query: 265 VSNAAAVALYI--TQNHF 280
            + +A + +Y    Q   
Sbjct: 243 AAISATLLMYECNRQRRL 260


>gi|170016763|ref|YP_001727682.1| rRNA methylase [Leuconostoc citreum KM20]
 gi|169803620|gb|ACA82238.1| rRNA methylase [Leuconostoc citreum KM20]
          Length = 257

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 116/266 (43%), Gaps = 17/266 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S ++S         + + K+ +  +K R  ++     L G H V  A+   + K  
Sbjct: 2   DRILSNQNSRV-------KAWAKLAT--KKGRQENR--TYLLDGWHLVEEAIKAKA-KFH 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            ++AT+  +A    D  +PH  P   V  +    I G     QG+  E +          
Sbjct: 50  AVMATEAQMAEHLND--VPHGVPAFEVSEEVAKHIAGTN-TPQGIFAEISLPDKTFDPTY 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +    + LD++ DP N+G ++R+A A    G++     + + S  + ++  G+  H+  
Sbjct: 107 VHDGAWLFLDNIQDPGNVGTLVRTADAAGFRGVVLGTGTADAYSPKVVRAMQGSQFHLEI 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   +L +    + + G    G    ++ K       + + ALI+G EG+G+     +  
Sbjct: 167 LN-GDLHEWTDALTANGLPVYGSQLNEAAKSYRTIQPSTQFALIVGNEGQGMAESLADKT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T+  ++ + G  ++LNV+ A  + ++
Sbjct: 226 TANLYIPIQGQAESLNVAIAGGILMF 251


>gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan
           troglodytes]
          Length = 353

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 125/307 (40%), Gaps = 53/307 (17%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENL-----------------FLYGV 54
           + +++D+ + +L   H        F+  +RH  +P                     L+G+
Sbjct: 4   LSTVRDATWGRLVTRH--------FSHAARHGERPGGEELSRLLLDDLVPTSRLELLFGM 55

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKIVGKEA 109
                AL    R + +LL            A L         PV     Q +D +   + 
Sbjct: 56  SPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDTMCRYQ- 114

Query: 110 VHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           VHQG+ +E +PL          +       QL +VLD + DP N GA+LRSA     D +
Sbjct: 115 VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHFLGVDKV 174

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-------SSD 215
           IT++R S   + V++KS++GA+E +      +LT  LQ     G+   G           
Sbjct: 175 ITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQ 234

Query: 216 SKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSN 267
           S +       + +      L+LG EG GL  + Q +   +  +     +P  +++LNVS 
Sbjct: 235 SSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSV 294

Query: 268 AAAVALY 274
           AA + L+
Sbjct: 295 AAGILLH 301


>gi|183984618|ref|YP_001852909.1| rRNA methyltransferase [Mycobacterium marinum M]
 gi|183177944|gb|ACC43054.1| rRNA methyltransferase [Mycobacterium marinum M]
          Length = 279

 Score =  198 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D    
Sbjct: 25  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSP-RALLGTDRRLLELKDDLA-G 82

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P   V P  + ++VG       LA  +  +       V  ++ + VL+ VND  N+G
Sbjct: 83  VGVPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHENLG 142

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D +I     +        + + G    +PY R ++    L  +   GF+
Sbjct: 143 SIFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKERGFR 202

Query: 209 TIGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+              + +  +AL++GAEG GL       +     + M     +LN
Sbjct: 203 LLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 262

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 263 VATAAALAFYERAR 276


>gi|257789988|ref|YP_003180594.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|317489433|ref|ZP_07947943.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|257473885|gb|ACV54205.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|316911362|gb|EFV32961.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
          Length = 283

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 102/268 (38%), Gaps = 19/268 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDA 85
           + ++     +S+   +           +  AL      +  L+  K   A      +  A
Sbjct: 16  FARLTEAQLRSKLEPEKALFIAESGKVIERALAAGMEPLSLLMEAKWLPAMQPIIDEISA 75

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV   P   + K+ G E     L     P L    D VR ++ + VL+ + +  
Sbjct: 76  RWGDGVPVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRITVLEDITNHT 135

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI------------S 193
           N+GAI RSA A   D ++ T            + + G +  +P+ RI             
Sbjct: 136 NVGAIFRSAAALGIDAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTGG 195

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATS 250
              D +  +H  GF+T   +  D   PL+    N  +++AL+ G EG GL   T      
Sbjct: 196 WAPDGVPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDY 255

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + M   + +LNV+ A+AVA +  + 
Sbjct: 256 TVRIPMACGVDSLNVAAASAVAFWQLRR 283


>gi|49483300|ref|YP_040524.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
 gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
 gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 246

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|315604571|ref|ZP_07879634.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313583|gb|EFU61637.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 289

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 110/280 (39%), Gaps = 23/280 (8%)

Query: 20  YAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +A LR + R  DY +++    +SR   +           +  A+    R     L +   
Sbjct: 7   HADLREDPRLTDYTRLKDVKLRSRIEPERGLYMAESATVIERAIAAGHRP-RSFLVSARW 65

Query: 78  LARLDWDANLPHP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           L  L                PV   P + ++++ G       LA    P L   +  + +
Sbjct: 66  LPTLRPLIAAATGSFEDGEVPVFVAPEEVLERMTGFHLHRGALAAMQRPQLPSVVQLLTS 125

Query: 132 S------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +      + ++VL+++ D  N+GA  RSA A   D ++ T   +        + + G + 
Sbjct: 126 AQPPQPTRRVVVLENLVDHTNVGAAFRSAAALGIDAVLVTPSCADPLYRRSVRVSMGTVF 185

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI-------KNDKIALILGAEG 237
            +P+ R+ +    +  +   GF    L+  +    L+           + ++A+++G EG
Sbjct: 186 QVPWTRLESWPGDIALLRDAGFTLASLALCEDSISLDDFAALPALRGPDARLAIVMGTEG 245

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL   T   +     + M   + +LNV+ A+AV  + T+
Sbjct: 246 HGLGKHTIAASDYTVKIPMDHGVDSLNVAAASAVVFWATR 285


>gi|322411169|gb|EFY02077.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 245

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 97/232 (41%), Gaps = 14/232 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + ++  + G H    A     +    +   +    R      +     V  V    + ++
Sbjct: 23  RQQSYLIEGWHLFEEA-QQSGQGFRHIFVLEELAER------VADQEKVVLVSADVLKEL 75

Query: 105 VGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
               +  QG+  E   P L+   D        ++L+ V DP N+G I+R+A A   DG+ 
Sbjct: 76  TDSPS-PQGIIAEVDMPQLAFPTDYQGK---YLILEDVQDPGNLGTIIRTADAAGFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQ 222
            +++ +   ++   +S  G+  H+   R +++    ++M       +  +        + 
Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLSIWR-TDIYKICREMQEHNTPVLATTLSKVSVDYKT 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  AL++G EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 191 VPHQESFALVMGNEGQGISAEMTALADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 257

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 118/266 (44%), Gaps = 17/266 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S +++         + + K+ +     +   +     L G+H V  A+   + K  
Sbjct: 2   ERIISNQNARV-------KAWAKLAT----KKGRQENHTYLLDGLHLVEEAVKAGA-KFH 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            ++AT+  +A  D+  N+PH  P   +  +    I G     QG+  E +        + 
Sbjct: 50  AIMATEKQMA--DYLPNVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEISLPEKTFDPSY 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +    ++LD + DP N+G ++R+A A    G++     + + +  + ++  G+  H+  
Sbjct: 107 VHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEV 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   +L++ +  + +      G   + K K       + +  LI+G EG+G+  +  E  
Sbjct: 167 LN-GDLSEWVAALAANNLPVYGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAELAEKT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T+  ++ + G  ++LNV+ A  + ++
Sbjct: 226 TANLYIPIQGQAESLNVAIAGGILMF 251


>gi|325963236|ref|YP_004241142.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469323|gb|ADX73008.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 269

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 6/266 (2%)

Query: 19  HYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           HY +   + R  DY ++   + +                 +  AL    +        + 
Sbjct: 4   HYLESAADPRVSDYTQLTDVHLRKLREPAEGMYIAESSRVLRRALAAGHQP-RSFFLAEK 62

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            L  L          P        +++I G       +A    P   P  D +  ++ + 
Sbjct: 63  WLDDLQDVLGAYPDVPAFIGSAALLEEITGFHLHRGAMAAMQRPAPVPLPDLLAGARRVA 122

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A   D ++ + R          + + G +  +P+ R+S+  
Sbjct: 123 VLEDIVDHTNVGAIFRSAAALDIDAVLVSPRCGDPLYRRSVRVSMGTVFQVPWARLSSWP 182

Query: 197 DALQKMHSWGFQTIG--LSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAH 253
             L  +   GF      L++D++       +N +K+AL+LG EG G+  +T         
Sbjct: 183 QDLYLLKEHGFTVAALELTADARDVDAVAAQNPEKLALVLGTEGAGMSAETLAAVDLAVK 242

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M   + +LNV+ A+AVA +  +  
Sbjct: 243 IPMRNGVDSLNVAAASAVAFWELRAR 268


>gi|157819051|ref|NP_001102302.1| rRNA methyltransferase 1, mitochondrial [Rattus norvegicus]
 gi|149053705|gb|EDM05522.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 320

 Score =  198 bits (504), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 28/251 (11%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKIV 105
           L+GV     AL    R + +LL            A L         PV     Q +D + 
Sbjct: 50  LFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRRQKLDALC 109

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFS 158
           G + VHQG+ +E + L     D   ++       QL +VL+ + DP N+GA++RSA    
Sbjct: 110 GYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRSAYFLG 168

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL------ 212
            D +IT++R S   + V++K+++GA+E +      +L   LQ     G+  +G       
Sbjct: 169 VDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQAKAQQGWLVVGTVGCPGP 228

Query: 213 --SSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKAL 263
             S  SK P+    + I +    L+LG EG GL      T   +  +    H+P  +++L
Sbjct: 229 EISQSSKVPVTSCLEFIWDRPTLLVLGNEGSGLSQGVFATCQLLLTILPGRHLPPGLESL 288

Query: 264 NVSNAAAVALY 274
           NVS A  + L+
Sbjct: 289 NVSVATGILLH 299


>gi|291563020|emb|CBL41836.1| rRNA methylases [butyrate-producing bacterium SS3/4]
          Length = 280

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 7/242 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P        + +  ALN     +  L+  K A   +          PV T     +
Sbjct: 30  NEPKPGIFIAESPNVIERALNAGYEPLAVLIEEKQADDLIPKLFFAYPELPVYTAKFDLL 89

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             + G       L      +L    +       + VL++V +P NIGAI RSA A   D 
Sbjct: 90  TNLTGFALTRGLLCAMKRKILPSVAEICEGKHRIAVLENVMNPTNIGAIFRSAAALGMDA 149

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQKMHSWGFQTIGLSS-DS 216
           ++ T   S       A+ + G +  IP+       D     L+ + S GFQT  ++  + 
Sbjct: 150 VLLTSGCSDPLYRRAARVSMGTVFQIPWTFFPKNADLSCGGLEALRSLGFQTAAMALKED 209

Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ++    +  +K+A+ILG EG GL   T         + M   + +LNV+ A+AVA +
Sbjct: 210 SVSIDDPKLLAAEKLAVILGTEGDGLASATIGGCDHTVMIPMAHGVDSLNVAAASAVAFW 269

Query: 275 IT 276
             
Sbjct: 270 EL 271


>gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
           subsp. aureus H19]
          Length = 246

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-IIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|224023886|ref|ZP_03642252.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
           18228]
 gi|224017108|gb|EEF75120.1| hypothetical protein BACCOPRO_00603 [Bacteroides coprophilus DSM
           18228]
          Length = 282

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +  AL+     +  L   ++               P
Sbjct: 20  LTEAQLRNRLDPAKGVFIAESPKVIRVALDAGYEPLSLLCERRHLTGDAADILARVGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T     + ++ G       L     P +    +  ++++ ++V+  V D  NIGAI R
Sbjct: 80  VYTGERDLLARLTGYTLTRGVLCAMRRPCVREVAEVCKDARRVVVIHGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T       +    + + G++  +P+         L+ +   GF+T  L
Sbjct: 140 SAAALGIDAVLLTPDSCDPLNRRAVRVSMGSVFLVPWTWAD---RPLECLKELGFKTAAL 196

Query: 213 SS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  D   PL+  +     ++AL++G EG GL     + A  +A + M   + +LNV+ A+
Sbjct: 197 ALTDRSVPLDYPLLKQESRLALVMGTEGDGLPQTAIDGADYVARIPMYHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           AVA +  +
Sbjct: 257 AVAFWELR 264


>gi|332982296|ref|YP_004463737.1| tRNA/rRNA methyltransferase SpoU [Mahella australiensis 50-1 BON]
 gi|332699974|gb|AEE96915.1| tRNA/rRNA methyltransferase (SpoU) [Mahella australiensis 50-1 BON]
          Length = 261

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 101/254 (39%), Gaps = 5/254 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S    S    +    F+ G   +  A+      +F + ++    + L     
Sbjct: 7   NPRIKLVRSLA-SSHGRKKSGLYFIEGAKLIEEAIKANEDILFIVYSSDFGDSTLLKLI- 64

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPH 145
           +       +V P     I    A  QG+            + +     LL+VLD V DP 
Sbjct: 65  IDRDIDNFSVLPDVFVNIADT-ATPQGVLAVLKQQQRDWHEIMMLEHCLLLVLDAVQDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A A     +I  +  +   +  + ++A G+  H+P      L +AL ++   
Sbjct: 124 NVGTMIRTADAMGFSAVIAGRGTADQYNPKVLRAAMGSSFHMPVYNDVPLPEALTELMER 183

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +         +++    D+ A+I+G E +G+  K  + A     + MPG  ++LN 
Sbjct: 184 -VSVLAAVPRGGIDIDEAPLADRTAIIIGNEARGISDKVMDNAAYTVSIGMPGRAESLNA 242

Query: 266 SNAAAVALYITQNH 279
           S AA + +Y     
Sbjct: 243 SIAAGIIMYEISRR 256


>gi|148993166|ref|ZP_01822732.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|147928140|gb|EDK79158.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP9-BS68]
          Length = 236

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 15/247 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K  +  +QK    S      + G H    A+      I ++ A +N   +L   A  P  
Sbjct: 3   KNAKKLHQKKYRKSA---YLIEGWHLFEEAVQAGV-TIEKIFALENYRNQL---AAFPQT 55

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                +    +  +   +   QG+            D  +     + L+ V DP N+G I
Sbjct: 56  V---WISEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGK--FLFLEDVQDPGNVGTI 109

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A    G+I + + +   S    +S  G+  H+P  R+++    L +        +
Sbjct: 110 IRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVL 168

Query: 211 GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             +        +E+ + +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA
Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAA 228

Query: 270 AVALYIT 276
            + ++  
Sbjct: 229 GILIFYL 235


>gi|307729346|ref|YP_003906570.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
 gi|307583881|gb|ADN57279.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1003]
          Length = 262

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 112/266 (42%), Gaps = 11/266 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDAAGQPEMCV-VTEGALR 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMV 137
             +  A +      + V  P  +   +    VH  G+ L    L +P  + V  +   +V
Sbjct: 61  HDEAQAIVSRIDSQRIVTLPDALFGQLS-NVVHGVGMLLLVEKLDTPLPETVGQT--CIV 117

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V D  N+G+ILRSA A     +      + + S+ + +S  GA   +      +   
Sbjct: 118 LDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDAQT 177

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            ++++       +   S   + +     + ++A + G EG G+    ++  +    +  P
Sbjct: 178 LIERLA---VPVVITDSHGAEAIYDCDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQP 234

Query: 258 GIIKALNVSNAAAVALYI--TQNHFA 281
           G +++LNV+ AAAV ++    Q   A
Sbjct: 235 GGMESLNVAAAAAVCMFEQCRQRRAA 260


>gi|291087701|ref|ZP_06572067.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291074221|gb|EFE11585.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 297

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 103/245 (42%), Gaps = 8/245 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +P          +  AL+     I  L+ TK+   +           PV T     +
Sbjct: 53  YEPEPGIFIAESPKVIERALDAGYEPISLLMETKHVEGQGREVIARCGHIPVYTAQFDVL 112

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++ G +     L       +         ++ ++VL++V +P N+GAI RSA A   D 
Sbjct: 113 TRLTGFQLTRGVLCAMRRKRMPEACSICAGARRIVVLENVMNPTNVGAIFRSAAALGMDA 172

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYI-----RISNLTDALQKMHSWGFQTIGLS-SD 215
           ++ T   S        + + G +  IP+      ++    +  + +   GF+T  ++ SD
Sbjct: 173 VLLTPGCSDPLYRRAVRVSMGTVFQIPWTFFDGKKVKWPENGQELLREMGFKTAAMALSD 232

Query: 216 SKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               +++      +K+A+I+G EG+GL  +T   +  +  + M   + +LNV+ A+AVA 
Sbjct: 233 DSVSIDEPALRREEKLAVIMGTEGEGLCAQTIRESDYVVRIPMSHGVDSLNVAAASAVAF 292

Query: 274 YITQN 278
           +    
Sbjct: 293 WQLGR 297


>gi|15639103|ref|NP_218549.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025343|ref|YP_001933115.1| rRNA methylase [Treponema pallidum subsp. pallidum SS14]
 gi|3322373|gb|AAC65100.1| rRNA methylase, putative [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017918|gb|ACD70536.1| possible rRNA methylase [Treponema pallidum subsp. pallidum SS14]
 gi|291059527|gb|ADD72262.1| RNA methyltransferase, TrmH family, group 3 [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 292

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 102/276 (36%), Gaps = 47/276 (17%)

Query: 49  LFLYGVHTVSAALNNPS--------------------RKIFQLLATKNALARLDWDANLP 88
           + + G+  +   L                        R +    A +NA  +        
Sbjct: 1   MVISGLRAIEEFLRAQPAALEGLHAGGKNSKTQQSCVRVLTLYYAAENARIKRLLGMAAA 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAV----HQGLAL---------------ETAPLLSPTLD-- 127
               +       +DK+          H+G+                 +  P +  + +  
Sbjct: 61  RGIRITHTTCAVLDKLARSLPPALRDHRGILAVLSSPSATPQGSHTRKKRPAVDSSQERT 120

Query: 128 -----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                A     L++VLD + DPHN+GAI+RSA  FS D ++    +    +  + + ++G
Sbjct: 121 LLHALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAVLLPHHHGAGGTETITRVSAG 180

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           A+  +P +R+ NL      +   GF   G     +  +       K AL+LG EG G+ P
Sbjct: 181 AVAWVPLVRVRNLVRTAGILKRSGFWLYGADVAGEA-IGARTFPPKTALVLGNEGHGVSP 239

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +    ++  +   G + +LNVS AA + LY  + 
Sbjct: 240 LLRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRR 275


>gi|75907658|ref|YP_321954.1| tRNA/rRNA methyltransferase SpoU [Anabaena variabilis ATCC 29413]
 gi|75701383|gb|ABA21059.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena variabilis ATCC 29413]
          Length = 260

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 101/272 (37%), Gaps = 17/272 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           + SL++S   ++R+ H            ++   +     L G H +  A       +  +
Sbjct: 2   LTSLQNSLVKQIRKLH-----------STKERHKQGLFLLEGTHLLEEACAMDY-PLEVV 49

Query: 72  LATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T    A     W+         + V  + +  I        G+        S     +
Sbjct: 50  CCTPEWEASHTALWEEACNRCDRCEIVSEEVLQAIA-TTVQPDGVVATAK--RSELQSQI 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + +++ L+ + DP N+G I+R+A A    G+  ++     ++  + ++++G    +  
Sbjct: 107 PFTGVVLALETIQDPGNLGTIIRTAAAAGASGLWLSQDSVDLDNPKVLRASAGQWFRLAT 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   +Q     G Q +     +K    +   +    ++LG EG GL P     A 
Sbjct: 167 AVSEDLKATVQLCQQAGMQVVATLPTAKLTYWEIDWHKPSLILLGNEGAGLSPDLAAMAD 226

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + +   +++LNV+  +A+ LY  Q    
Sbjct: 227 QEVKIPLSPGVESLNVAITSALMLYEVQRQLN 258


>gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 257

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 118/266 (44%), Gaps = 17/266 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S +++         + + K+ +     +   +     L G+H V  A+   + K  
Sbjct: 2   ERIISNQNARV-------KAWAKLAT----KKGRQENHTYLLDGLHLVEEAVKAGA-KFH 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            ++AT+  +A  D+  N+PH  P   +  +    I G     QG+  E +        + 
Sbjct: 50  AIMATEKQMA--DYLPNVPHGVPAFEISEEVAKHIAGTN-TPQGIFAEISLPEKTFDPSY 106

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +    ++LD + DP N+G ++R+A A    G++     + + +  + ++  G+  H+  
Sbjct: 107 VHDGAWLLLDKIQDPGNVGTLVRTADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEV 166

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   +L++ +  + +      G   + K K       + +  LI+G EG+G+  +  E  
Sbjct: 167 LN-GDLSEWVAALATNNLPVYGSQLNEKAKSYRDVEPSTQFGLIVGNEGQGMSAELAEKT 225

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T+  ++ + G  ++LNV+ A  + ++
Sbjct: 226 TANLYIPIQGQAESLNVAIAGGILMF 251


>gi|260577991|ref|ZP_05845915.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
 gi|258603881|gb|EEW17134.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
          Length = 285

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTV 96
           +S    +     + G ++V AA+   S     +  T  A  R +            V  +
Sbjct: 29  RSAARKKAGVFLVEGENSVEAAIATGSAT--DVYVTLAAAERFEPIIRTAGYLNIYVHYI 86

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAV 155
                 K +   A   GL     P+L      +    QL+ V    NDP N G ++R A 
Sbjct: 87  T-DKAAKHLSDTATTTGLFAVCKPVLWSVGKVLTPQPQLVSVPVETNDPGNAGTLIRVAD 145

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D ++     +  +S   A++++G+L H+P  R +N+ D L ++ + G Q +  ++D
Sbjct: 146 AMGADAVVFAGETADPQSCKAARASAGSLFHVPVARSTNVKDVLGQLRAQGLQILATAAD 205

Query: 216 SKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  L+   EI     A + G E  GL  +    A     + + G  ++LN++ AA++ +
Sbjct: 206 GEVSLDDAGEILTKPTAWLFGNEAHGLGEELLAEADLRVSIPIRGRAESLNLATAASICM 265

Query: 274 YITQN 278
           Y +  
Sbjct: 266 YESSR 270


>gi|187918381|ref|YP_001883944.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
 gi|119861229|gb|AAX17024.1| 23S rRNA methyltransferase [Borrelia hermsii DAH]
          Length = 244

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 117/240 (48%), Gaps = 17/240 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N      +L  +K +   ++ +  L     ++ +    + KI+G    H+G 
Sbjct: 7   NSIIESIKNNKG--LRLYISKTSPKSINIE-KLAKEHKIQIIKVNDLAKIIGNND-HRGF 62

Query: 115 ALETAPL-----------LSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+   L           L   L+  +  N+  +++LD + DP N GAILR++  F+ D 
Sbjct: 63  ALKLKTLKSNNTKKQDKNLEEFLEEFQHQNNVFILILDGIEDPQNFGAILRTSEQFNIDL 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +IT++R S  ++A + +++SGA +++  + + N+ + ++ +   GF         K    
Sbjct: 123 VITSQRRSAKDNATILRTSSGASQYVNKLVVPNINNVIKYLKKNGFWIYASDIKGKAINT 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             I + KIALI+G EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 183 TPINDTKIALIMGNEGKGIHKLIKENSDFLVRIPTKGKIDSLNVSVSTGILIFEIKRQLN 242


>gi|323126636|gb|ADX23933.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 245

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 14/232 (6%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H    A     +    +   +    R      +     V  V    + ++
Sbjct: 23  RQHSYLIEGWHLFEEA-QQSGQGFRHIFVLEELAER------VADQEKVVLVSADVLKEL 75

Query: 105 VGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
               +  QG+  E   P L+   D        ++L+ V DP N+G I+R+A A   DG+ 
Sbjct: 76  TDSPS-PQGIIAEVDMPQLAFPTDYQGK---YLILEDVQDPGNLGTIIRTADAAGFDGVF 131

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQ 222
            +++ +   ++   +S  G+  H+P  R +++    ++M       +  +        + 
Sbjct: 132 LSEKSADVYNSKTLRSMQGSHFHLPIWR-TDIYKICREMQEHNTPVLATTLSKVSVDYKT 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               +  AL++G EG+G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 191 VPHQESFALVMGNEGQGISAEMTILADQLVHITMPGQAESLNVAVAAGILIF 242


>gi|312194281|ref|YP_004014342.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
 gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
          Length = 366

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 11/233 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVP--P 98
                 +  + G + V  AL          +        RL     L     +  V    
Sbjct: 115 RRPGETDELVVGRNAVVEALRAGIPAATLYVAGGLEFDERLTEARKLAGRAGMAVVDIGR 174

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILR 152
             +D++ G  A HQGLAL   P      D +       +  LL+ LD V DP N+GA++R
Sbjct: 175 FELDRLCG-VAPHQGLALVVPPFRYAHPDDLLARARASDPGLLVALDGVTDPRNLGAVVR 233

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA AF   G++  +R +   +A   K+++GA   +P  R +NL   L+     G   +GL
Sbjct: 234 SAAAFGAQGVVVPERRAAGMTAAAWKTSAGAAARLPVARATNLNRTLRSYADGGLVVVGL 293

Query: 213 SSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++++   L+      D I L++G+EG+GL     E    +  + M G +++LN
Sbjct: 294 AANADVSLDDLAAATDPIVLVIGSEGRGLSRLVGENCDLLVRIPMAGEVESLN 346


>gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
 gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
          Length = 246

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSEI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|240143678|ref|ZP_04742279.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
 gi|257204355|gb|EEV02640.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
          Length = 281

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---------- 75
           +++  K +    +K++  ++       G      A   P   + Q+  ++          
Sbjct: 6   SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVYVSESFYGTCTQGN 62

Query: 76  --------------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                           L R   +      + +  V      K V      QG+       
Sbjct: 63  MQDCMESCTPKHGEEKLNRKVLERLNETGYEI--VSDNVF-KSVSDTQTPQGILCVIKKP 119

Query: 122 LSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                + ++  Q  L++L+ + DP N+G ++R+       G+I  +      +    +S 
Sbjct: 120 EYALEELIKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRST 179

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  +P+    +L   +  +                  ++     K A ++G EG GL
Sbjct: 180 MGSIYRVPFFITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGL 239

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  + A +   + M G +++LN + +A++ +Y T    
Sbjct: 240 SDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279


>gi|270290417|ref|ZP_06196642.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
 gi|304384701|ref|ZP_07367047.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
 gi|270281198|gb|EFA27031.1| TrmH family RNA methyltransferase [Pediococcus acidilactici 7_4]
 gi|304328895|gb|EFL96115.1| TrmH family RNA methyltransferase [Pediococcus acidilactici DSM
           20284]
          Length = 256

 Score =  197 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 19/267 (7%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI S+K+S         +++ K+++ N + ++       FL G H V  AL    +  +
Sbjct: 3   EKISSVKNSKV-------KEWVKLKTNNGRKKYRR----FFLEGRHPVETALVEERQ--Y 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH-QGLALETAPLLSPTLDA 128
           + L  +        +AN+     +  V  +    I   + VH QG+ L      +     
Sbjct: 50  EYLIVEEGFDLASLEANVDEDKLI-VVTKEVSKHIA--DTVHEQGIFLIGYVEDAVYEMP 106

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              +   ++LD+V DP NIG ++R+A A    G+I     +   +  + ++  G+  H+ 
Sbjct: 107 NDTTGQWLLLDNVQDPGNIGTMVRTADAAGFTGVIFGSGTADFYNPKILRAMQGSQYHLQ 166

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             R+ NL   ++  H       G   D   +           +LI+G EG G+ P+  + 
Sbjct: 167 LKRL-NLQKWIEACHQAHQAVYGSILDEHAQSYRDIDAPKDFSLIMGNEGNGMSPELVKA 225

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                ++ + G  ++LNV+ AA V ++
Sbjct: 226 TDCNLYIPIKGNAESLNVAVAAGVLMF 252


>gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 253

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 114/269 (42%), Gaps = 18/269 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I S  +S         +++KK+ +   + R         L G+H V  AL    +K+ +
Sbjct: 2   EITSTSNSRV-------KEWKKLNTKKGRKRQNK----YILDGLHLVKEALKAN-KKVEE 49

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LL T +    L+ +  +P    V  +  + + K + +    QG+    +          +
Sbjct: 50  LLIT-SKFEHLN-EIEIPDETKVIMIS-EEVSKSISETQTPQGIFGIVSIEEEKITYPQK 106

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +    ++LD V DP NIG ++R+A A    G+I  +  +   +  + ++  G+  HI  I
Sbjct: 107 DVGAWLMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVI 166

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              NL+  ++          G   +   +      ++   AL++G EG G+  +  E  +
Sbjct: 167 N-DNLSGWIRHFKDMKVPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEILEMTS 225

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
              ++ +    ++LNV+ AA + ++  + 
Sbjct: 226 INLYIPIT-NAESLNVAVAAGILMFALKK 253


>gi|313683424|ref|YP_004061162.1| RNA methyltransferase, trmh family, group 3 [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156284|gb|ADR34962.1| RNA methyltransferase, TrmH family, group 3 [Sulfuricurvum kujiense
           DSM 16994]
          Length = 225

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   V  A+     +I  L   K  L + ++ + +   F +K +P +    +V K 
Sbjct: 1   MIIYGKQPVYYAIERHRERIKVLYLAKE-LDKKEYSSLMKMGFEIKRIPEKAAQSMV-KG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG   E + ++      ++    ++VL  + D  NIG+++RSA A     ++ +   
Sbjct: 59  GNHQGFIAEISQVVPYASPFLKKCDFIVVLSSITDMGNIGSLIRSAYALGVQALVISGIK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
            P+  A++ +++SGA   +P + I N+ D L ++   GFQ  G   D     E      +
Sbjct: 119 DPNLEAMI-RTSSGAALDLPLVIIHNIHDVLHELKQSGFQIYGAVMDGVDVREASFAAKR 177

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + L+LG EG+GL  + Q++      + M     +LNV  A A+ +
Sbjct: 178 V-LVLGNEGEGLSGRVQKSLDVGISIPMAHDFDSLNVGVAGAILM 221


>gi|156932878|ref|YP_001436794.1| putative methyltransferase [Cronobacter sakazakii ATCC BAA-894]
 gi|156531132|gb|ABU75958.1| hypothetical protein ESA_00679 [Cronobacter sakazakii ATCC BAA-894]
          Length = 357

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 113 RRQRAEETRVYGENACQALFQSRPESIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 172

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++D       +   ++ L+ V +PHN+GAI+RS  
Sbjct: 173 ELTKASGTE-HHGGVCFLIKKRSGASVDQWLSKAGDEDCVLALEDVGNPHNLGAIVRSCA 231

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I   + +DAL +  + G+  +  SS 
Sbjct: 232 HFGVKGVVVQDA-SLLESGAAVRTAEGGAEHVEPITGDSFSDALAQFRAAGYAIVTTSSH 290

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL +     K+ L+LG E +G+   TQ  A     +   G +++LNVS A  V L  
Sbjct: 291 KGTPLFKATLPKKMVLVLGQESEGISEATQANADLSLSIDGTGNVESLNVSVATGVLLAE 350

Query: 274 YITQN 278
           +  QN
Sbjct: 351 WWRQN 355


>gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
 gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
 gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
 gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
 gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115]
 gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
 gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
 gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
 gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
 gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
 gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
 gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
 gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
 gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
 gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
 gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
 gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
 gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315]
 gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721594|dbj|BAF78011.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
 gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
 gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
 gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
 gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115]
 gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300]
 gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
 gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
 gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
 gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
 gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
 gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
 gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
 gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
 gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981]
 gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
 gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
 gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
 gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21193]
 gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 246

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPHYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|319949870|ref|ZP_08023879.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319436460|gb|EFV91571.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 278

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 112/263 (42%), Gaps = 13/263 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL------- 81
           D + + + +++         +   G + V   L +  R    LL T + L +L       
Sbjct: 16  DLRDLNNSDRRPDLPGGRGLVIAEGTYVVGRMLLSRFRP-HVLLGTDSRLQQLRREATAE 74

Query: 82  DWDANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            WDA+      V        + +++G  +    LA    P      + V  ++ L+VL+ 
Sbjct: 75  GWDADERAGDAVYLRTTKDVLSEVIGFRSSRDILAAADRPGPLAVDEVVDGARTLVVLEG 134

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLT 196
           VNDP N+GAI R+  A   DG++            + + + G +  +P+  +    +   
Sbjct: 135 VNDPENLGAIFRNCAALGVDGVLFGAATGDPLYRRVVRVSMGHVLRLPFAHLPGTPTTWQ 194

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +L  +   GF+TI L+  ++ PL + +  +K+A +LGAEG GL           A + M
Sbjct: 195 RSLDDLRERGFRTIALTPAAEAPLSRAVDAEKVAFVLGAEGPGLTEHAMRACDVRAAIPM 254

Query: 257 PGIIKALNVSNAAAVALYITQNH 279
                +LNV+ AAAVA Y     
Sbjct: 255 TDGTDSLNVATAAAVAFYERARR 277


>gi|239626147|ref|ZP_04669178.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520377|gb|EEQ60243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 264

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 100/258 (38%), Gaps = 9/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           ++  K++ +   +++   +       G+           +    L  T+   A    +  
Sbjct: 7   NKQVKRVVNLRNRAKARREEGVYVAEGLRMCREL---SIKDTEILYVTEG-FAGDRENRK 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVN 142
               F  + V    + K++      QG+            D ++  +     +MVL+ + 
Sbjct: 63  WMDGFRFEIVTDVVM-KVMADTQTPQGVLAVARQKTYTLEDILKAPRNGKLAIMVLETIQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A      GI+  +  +   +  + +S  G++  +P++ + ++  A Q M
Sbjct: 122 DPGNLGTIVRAAEGAGITGIVMNRETTDIYNPKVIRSTMGSICRMPFVCVDDIRQACQTM 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G +            +QE   D +  ++G E  GL   T   A     + M G +++
Sbjct: 182 KDSGVRLFAAHLKGMNNYDQEDYTDNVGFLIGNEAGGLTDGTAAMADCYVKIPMAGRVES 241

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA+V ++      
Sbjct: 242 LNAAVAASVLMFEAARQR 259


>gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 246

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 118/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPHYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             I +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MIQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 246

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPHYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QKLIIPIYGKAESLNVAIAGSILLY 242


>gi|296138340|ref|YP_003645583.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
           paurometabola DSM 20162]
 gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
           paurometabola DSM 20162]
          Length = 324

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 117/251 (46%), Gaps = 15/251 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVP 97
             ++    ++ G + V   L    P+  ++  +  +N   RL     +       +  V 
Sbjct: 73  RAAEDGPEYVLGRNPVVECLRADVPATALYVAVGAQN-DERLTESVRMAADKGISILEVQ 131

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAI 150
              +D++  +  +HQG+AL+  P      + +         + +++ LD++ DP N+GA+
Sbjct: 132 RAELDRM-SENGLHQGIALQIPPYSYAHPEDLLRRAADRGEAPMIVALDNITDPRNLGAV 190

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA AF   G++   R S + +AV  ++++GA   +P  +  NL   L    + G Q +
Sbjct: 191 IRSAAAFGGHGVVIPSRRSAAITAVTWRTSAGAAARLPVAQAPNLNRTLADYAAAGLQIV 250

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           GL +     L+    +  + +++G+EGKGL    +E   S+  + +   +++LN S AA 
Sbjct: 251 GLDAGGDVTLDDYRADTGVVVVVGSEGKGLSRLVRENCDSILSIPIASSVESLNASVAAG 310

Query: 271 VAL--YITQNH 279
           V L  +  Q  
Sbjct: 311 VVLADFARQRR 321


>gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51]
 gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 285

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 101/289 (34%), Gaps = 31/289 (10%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           ++++  ++E++  + + H  K R  +                       + G   V   L
Sbjct: 14  DMLTSLQNEQVKYVVNLHKRKFREEN-------------------GEFLIEGWRFVEEGL 54

Query: 62  NNPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
              +   K+F     KN       +A      PV  V  + + K+   E   QG+     
Sbjct: 55  ARGAHLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDTE-NPQGILAVVK 113

Query: 120 PLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                  D +            +L++LD V DP N G ILR+A+A     +  T+     
Sbjct: 114 QSRWTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDL 173

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +  + +S  GA+  +         + L+   S         ++    L +      +AL
Sbjct: 174 YNLKVLRSTMGAIFSLNIATHCQPEEILKVCRSHKIPVFVGDAEG-TDLYETHFAQPMAL 232

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G EG G     +        + M   +++LNV+ A  + LY  +   
Sbjct: 233 VVGNEGNGPSAAFRGPGVKRITIPMSHQVESLNVAMATGIILYEVRRRM 281


>gi|218438771|ref|YP_002377100.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
 gi|218171499|gb|ACK70232.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
          Length = 265

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 105/270 (38%), Gaps = 16/270 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I SL++    ++R+ HR            +   +     + G H +  A  + +  +  +
Sbjct: 2   ITSLQNPLIKQMRKLHR-----------PKGRREQNLFLIEGTHLLETAC-SVNSSLDVV 49

Query: 72  LATKNALA--RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T       +  W+         + V P+ +  I        G+      +   +L A 
Sbjct: 50  CCTPQWQTNHKQLWEKAQSLAQRTEVVTPEVLAAIA-TTINPDGVVASATRIFEDSL-AK 107

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L ++L+ + DP N+G I+R+AVA   D +  T      ++  + ++++G    +P 
Sbjct: 108 SPLSLGLMLERLQDPGNLGTIIRTAVATEVDQLWLTHDSVDLDNPKVLRASAGEWFRVPM 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               NL   ++       Q IG      K   +        ++LG EG GL P+      
Sbjct: 168 RVSDNLGALIEGYKRQQVQVIGTLPQGNKTYWEIDFTRPTLILLGNEGAGLTPELVSLVD 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + + G +++LNV+ AAA+ LY  +  
Sbjct: 228 QQVTIPLGGGVESLNVAIAAALLLYEAKRQ 257


>gi|149003632|ref|ZP_01828497.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758364|gb|EDK65364.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP14-BS69]
          Length = 236

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 15/245 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K  +   QK    S      + G H    A+      I ++ A +N   +L   A     
Sbjct: 3   KNAKKLRQKKYRKSA---YLIEGWHLFEEAVQAGV-TIEKIFALENYRDQL---ATFSQT 55

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                V    +  +   +   QG+            D  +     + L+ V DP N+G I
Sbjct: 56  V---WVSEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGK--FLFLEDVQDPGNVGTI 109

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A    G+I + + +   S    +S  G+  H+P  R+++    L +        +
Sbjct: 110 IRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVL 168

Query: 211 GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             +        +E+ + +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ AA
Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAA 228

Query: 270 AVALY 274
            + ++
Sbjct: 229 GILIF 233


>gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
          Length = 253

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 113/269 (42%), Gaps = 18/269 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I S  +S         +++KK+ +   + +         L G+H V  AL    +K+ +
Sbjct: 2   EITSTSNSRV-------KEWKKLNTKKGRKKQNK----YILDGLHLVKEALKAN-KKVEE 49

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LL T +    L+ +  +P    V  +  +   K + +    QG+    +          +
Sbjct: 50  LLIT-SKFEHLN-EIEIPDETKVIMISKEV-SKSISETQTPQGIFGIVSIEEEKITYPQK 106

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +    ++LD V DP NIG ++R+A A    G+I  +  +   +  + ++  G+  HI  I
Sbjct: 107 DVGAWLMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVI 166

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              NL+  ++          G   +   +      ++   AL++G EG G+  +  E  +
Sbjct: 167 N-DNLSGWIRHFKDMKVPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGISKEILEMTS 225

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
              ++ +    ++LNV+ AA + ++  + 
Sbjct: 226 INLYIPIT-NAESLNVAVAAGILMFALKK 253


>gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 246

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 116/265 (43%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A       I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQRGI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   + + +       G + ++    ++   +D  AL+LG EG+G+ P+     T
Sbjct: 162 -MTQDLDTFITQFNG---PVYGTALENAVAYKEVTSSDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|330817424|ref|YP_004361129.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
           BSR3]
 gi|327369817|gb|AEA61173.1| RNA methyltransferase, TrmH family protein [Burkholderia gladioli
           BSR3]
          Length = 260

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 7/260 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    ++   +     L G+H  SA L+   +    +  T  AL+  + 
Sbjct: 6   SRDNPLYKRLKALAGSTQQQRRGAQALLEGLHLASAYLDARGQPELCV-VTDGALSHDET 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +    P + V  P  +   +       G+ L      +      R ++  MVLD V 
Sbjct: 65  QAIVARVEPQRVVSLPDALFGQLSSVVNGIGMLLLVERPAAELP--GRVARTAMVLDGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +   +  + + S+ + +S  GA   +           + ++
Sbjct: 123 DAGNVGSILRSAAAAGVSQVFCMRGTAYAWSSKVLRSGMGAHFLLDIHEDVEAEALIPRL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + ++       +A + G EG G+    +E A     +  PG +++
Sbjct: 183 ---DVPVALTDSHGAQAIDDCDLTGPVAWVFGNEGAGVSAAWREAAGLRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ AAAV L+       K
Sbjct: 240 LNVAAAAAVCLFEQCRQQRK 259


>gi|302669499|ref|YP_003829459.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302393972|gb|ADL32877.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 269

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 4/220 (1%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+     I  LL                   P+     Q + +I G       L     
Sbjct: 49  ALDAGYEPISLLLEKGQTEKEAAEIIERCENAPIYIAESQVLTQITGFHLTRGVLCAMRR 108

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
            +L      V+++  + VL++V +P N+GAI+R+A A   D ++ T   +       A+ 
Sbjct: 109 KVLPSVESLVKDAHRIAVLENVTNPTNLGAIVRNAAALGLDAVLFTHGSTDPLYRRAARV 168

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKN-DKIALILGAE 236
           + G +  IP+  +   ++ +  +   GF+T+ ++   D+K   + E+KN DK+A+ LGAE
Sbjct: 169 SMGTVFQIPWTFLPEGSE-IDTIKGLGFKTVAMALRNDTKDISDPELKNADKLAIFLGAE 227

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G GL P+T         + M   + +LNV+  +AVA +  
Sbjct: 228 GDGLLPETIAACDCCVKIPMAHGVDSLNVAACSAVAFWEL 267


>gi|108801430|ref|YP_641627.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119870583|ref|YP_940535.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108771849|gb|ABG10571.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119696672|gb|ABL93745.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 270

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   + +       LL T   L  L  D +  
Sbjct: 17  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMVASRFTP-RALLGTDRRLTELGTDLD-A 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + ++VG       LA  + P      DA+  ++ + VL+ VND  N+G
Sbjct: 75  VDAPFYRADAEVMAEVVGFHLNRGVLASASRPPEISVADALDGARTVAVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D +I     +        + + G    +P+ R +   D L  +   GFQ
Sbjct: 135 SIFRNAAGLGVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARAAAWPDELNTLRDKGFQ 194

Query: 209 TIGLSSD-SKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++ D +   L      +  +++A ++GAEG GL  +    +     + M     +LN
Sbjct: 195 LLAMTPDPAADTLATAMTALAGERVAFLVGAEGPGLTERVMRASDRRVRIPMSRGTDSLN 254

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 255 VATAAALAFYERVR 268


>gi|224143649|ref|XP_002325029.1| predicted protein [Populus trichocarpa]
 gi|222866463|gb|EEF03594.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 79/335 (23%), Positives = 133/335 (39%), Gaps = 62/335 (18%)

Query: 1   MNLISKKKSEKIF-SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF--------- 50
           + ++   + +KI    +     + +    D+++    +   R T +    F         
Sbjct: 217 LEVVDDPRWDKIKNRFRGRVGVRGQTEKPDFQRWNRQDNWGRKTWKEATEFTVPKIVGEG 276

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK------NALARLDWD-----ANLPHPFPV--KTVP 97
           ++GV  V AAL+   R+ + L   +      N   R D         +     +  K V 
Sbjct: 277 VFGVGPVLAALSTGRREFYALYIQEGLDLSGNNRKRKDKKGFEKVLRMAKKIGLSTKEVS 336

Query: 98  PQTIDKIVGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
              ++ IV     HQGL L+ +PL       L   L       L + LD V DP N+GAI
Sbjct: 337 KHDLNMIVD-NRPHQGLVLDASPLEMVKIQELDAVLPDEEKGSLWVALDEVTDPQNLGAI 395

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA  F   G++   + S   S V++K+++G+LE +      N+   L      G++ +
Sbjct: 396 IRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVSSAENGWRVL 455

Query: 211 GLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-------PGI--- 259
           G S  SK   L + +      L+LG+EG GLRP  + + T +  +          G    
Sbjct: 456 GGSVSSKAVSLSEVLPGQPTILVLGSEGTGLRPLVERSCTQLVRIPGNIPVDATVGGGDE 515

Query: 260 --------------------IKALNVSNAAAVALY 274
                               +++LNVS AA V L+
Sbjct: 516 VKDEEINLECSSAEFRSFLAVESLNVSVAAGVLLH 550


>gi|255975196|ref|ZP_05425782.1| rRNA methylase [Enterococcus faecalis T2]
 gi|307285815|ref|ZP_07565949.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0860]
 gi|255968068|gb|EET98690.1| rRNA methylase [Enterococcus faecalis T2]
 gi|306502576|gb|EFM71843.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Enterococcus faecalis TX0860]
          Length = 258

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 113/280 (40%), Gaps = 24/280 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  K+ ++   K  H  K R                    +     + G H V  A
Sbjct: 1   MKEITSTKNNQLKEWKKLHKKKYRE-------------------ELNQYIIEGFHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   +   + L   +       W A       +  V  + ++ +  +    QG+      
Sbjct: 42  VKANADVQWILFNQRGQQEWGTWLAEQETEKLI-FVSDEVLNSL-SELPTSQGILAIVT- 98

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +    ++      ++LD++ DP N+G ++R+A A    G+I  K  +   +  + +S 
Sbjct: 99  LETQQEQSLSFKGGWLLLDNIQDPGNVGTMIRTADAAGLAGVILGKGTADIYNTKVLRSM 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+P ++   LT+ +Q     G    G    ++     ++   +  ALILG EG G
Sbjct: 159 QGSHYHLPVLQ-RELTEVVQAFKKQGLPVFGTELNEAAIAYYEQEAVENYALILGNEGSG 217

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + P+     T   ++ M G  ++LNV+ AA V ++  +N+
Sbjct: 218 VLPELLAETTKNLYIPMKGQAESLNVAIAAGVLMFYFENN 257


>gi|296270633|ref|YP_003653265.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296093420|gb|ADG89372.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 275

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 114/264 (43%), Gaps = 19/264 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++    +    ++       G   +  A+    R +  +L T   L RL   A++ 
Sbjct: 15  DYVRLRDSELRKSLEAERGLFIAEGEKVIRRAVATGHR-LRSVLTTAKWLDRL---ADVI 70

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--------LLMVLDH 140
              P   V  + +  I G + VH+G          P++  +             +++L+ 
Sbjct: 71  GDVPTYLVSDEVMRGIAGFQ-VHRGALAAVERPELPSVAGLLTGPGSGEGPPGRILILED 129

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+GAI R A A   D II + R +        K + GA+  IPY R+ +    L 
Sbjct: 130 LVDHGNVGAIFRCAAALGVDAIILSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLG 189

Query: 201 KMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---- 255
           ++ + GF+ + L+ D S  PL +    +++AL+LG+EG GL  +  + A     +     
Sbjct: 190 EVRAAGFRLLALTPDQSAVPLHEAELGERVALLLGSEGDGLSARWLDLADERVCIPMSPA 249

Query: 256 -MPGIIKALNVSNAAAVALYITQN 278
            M   + +LNV  AAA+A +    
Sbjct: 250 AMARGVDSLNVVAAAAIACHGLMR 273


>gi|148985553|ref|ZP_01818742.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922273|gb|EDK73394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP3-BS71]
          Length = 236

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 15/245 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K  +  +QK    S      + G H    A+      I ++ A +N   +L   A  P  
Sbjct: 3   KNAKKLHQKKYRKSA---YLIEGWHLFEEAVQAGV-TIEKIFALENYRNQL---AAFPQT 55

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                +    +  +   +   QG+            D  +     + L+ V DP N+G I
Sbjct: 56  V---WISEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGK--FLFLEDVQDPGNVGTI 109

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A    G+I + + +   S    +S  G+  H+P  R+++    L +        +
Sbjct: 110 IRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVL 168

Query: 211 GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             +        +E+ + +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ A 
Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAT 228

Query: 270 AVALY 274
            + ++
Sbjct: 229 GILIF 233


>gi|225390226|ref|ZP_03759950.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
           DSM 15981]
 gi|225043714|gb|EEG53960.1| hypothetical protein CLOSTASPAR_03976 [Clostridium asparagiforme
           DSM 15981]
          Length = 275

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 6/246 (2%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +RH  +           +  AL+     I  LL   +   +     +     PV T    
Sbjct: 28  NRHEPEKGVFIAESPKVIGRALDAGCVPISLLLERAHVEGQGKEIISRCGEIPVYTAEFD 87

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + K+ G +     L     P L       R ++ + VL++V +P NIGAI RSA A + 
Sbjct: 88  VLTKLTGFKLTRGMLCAMYRPKLPAVEAVCRGARRIAVLENVMNPTNIGAIFRSAAALNM 147

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHSWGFQTIGLSSDS 216
           D ++ T   S        + + G +  +P+  +         ++ +   GF+T  ++   
Sbjct: 148 DAVLLTPACSNPLYRRAIRVSMGTVFQVPWTFLEGTEWPQHGMELLSGLGFKTAAMALSD 207

Query: 217 KKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +     +   +  D++ALILG EG GL  +T         + M   + +LNV+ A+AVA 
Sbjct: 208 ESVRIDDPRLMAEDRLALILGTEGDGLAEETIADCDYTVRIPMAHGVDSLNVAAASAVAF 267

Query: 274 YITQNH 279
           +   + 
Sbjct: 268 WQLGSR 273


>gi|325830209|ref|ZP_08163666.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
 gi|325487676|gb|EGC90114.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
          Length = 283

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 101/268 (37%), Gaps = 19/268 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL----DWDA 85
           + ++     +S+   +           +  AL      +  L+  K   A      +  A
Sbjct: 16  FARLTEAQLRSKLEPEKALFIAESGKVIERALAAGMEPLSLLMEAKWLPAMQPIIDEISA 75

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV   P   + K+ G E     L     P L    D VR ++ + VL+ + +  
Sbjct: 76  RWGDGVPVFVAPHDELTKLTGFELTRGALGAFRRPQLPSVADIVRGARRIAVLEDITNHT 135

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI------------S 193
           N+GAI RSA A   D ++ T            + + G +  +P+ RI             
Sbjct: 136 NVGAIFRSAAALGIDAVLVTPACYDPLYRRAVRVSMGTVFQVPWTRIGEEAGAGATGTGG 195

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATS 250
                +  +H  GF+T   +  D   PL+    N  +++AL+ G EG GL   T      
Sbjct: 196 WAPTGVPLLHELGFKTAAFALTDDSVPLDDPALNAEERLALVFGTEGDGLAHDTIARCDY 255

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + M   + +LNV+ A+AVA +  + 
Sbjct: 256 TVRIPMACGVDSLNVAAASAVAFWQLRR 283


>gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
           ES-2]
 gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
           ES-2]
          Length = 258

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 107/260 (41%), Gaps = 13/260 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLD 82
            R++  YK++      +R+ ++     L G H + A L+        LL A     A + 
Sbjct: 6   SRDNPFYKELVKLTASTRNRNKAGQTLLDGAHLLKAYLDAGYTPRHILLNAAALQDAEIT 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    PV  +  +   ++   +     LAL   P        +  ++  ++L+ V 
Sbjct: 66  SLRQRITGAPVTQLDDKLFAELSELKTPTGILALIDLPPAK-----IVTARFALLLEAVQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G++LRSA A  CD +  +   + + S  + ++A G    +      +L       
Sbjct: 121 DPGNLGSMLRSAAAAGCDAVFLSPACADAWSPKVLRAAMGGHFCLAIYEQQDLFKV---- 176

Query: 203 HSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + G+  + +  +  +   L        IA ++G EG GL P+ +  AT    + MPG +
Sbjct: 177 -AQGYSGKLLATTLQATDSLFDCDLTGNIAFMVGNEGAGLTPELRALATHPVTIPMPGAV 235

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN + A A+ L+      
Sbjct: 236 ESLNAAAATAICLFEAVRQR 255


>gi|149021923|ref|ZP_01835910.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929961|gb|EDK80949.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP23-BS72]
          Length = 236

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 98/245 (40%), Gaps = 15/245 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K  +   QK    S      + G H    A+      I ++ A +N   +L   A     
Sbjct: 3   KNAKKLRQKKYRKSA---YLIEGWHLFEEAVQAGV-TIEKIFALENYRDQL---ATFSQT 55

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                V    +  +   +   QG+            D  +     + L+ V DP N+G I
Sbjct: 56  V---WVSEDILLDLADSQ-TPQGIVAVVQKEEVGQADLSQGK--FLFLEDVQDPGNVGTI 109

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A A    G+I + + +   S    +S  G+  H+P  R+++    L +        +
Sbjct: 110 IRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVL 168

Query: 211 GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             +        +E+ + +   L++G EG+G+ P   E+A  + H+ M G  ++LNV+ A 
Sbjct: 169 ATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAESLNVAVAT 228

Query: 270 AVALY 274
            + ++
Sbjct: 229 GILIF 233


>gi|188524104|ref|ZP_03004184.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195867706|ref|ZP_03079707.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198273459|ref|ZP_03205995.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|195659743|gb|EDX53123.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195660561|gb|EDX53817.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198249979|gb|EDY74759.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
          Length = 239

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 109/230 (47%), Gaps = 12/230 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   +  A+NN  + I ++   +     ++      +    + V  +   +       H
Sbjct: 5   FGKKALLDAINN-KQIISKVYLLEKNYELINLI--NKNQISYEVVNERWFKQ-FDHSLNH 60

Query: 112 QGLA--LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           Q +A  L        +L++       + + L+++LD + DP N GAI+R+A AF  DGII
Sbjct: 61  QNIAFKLVKKSFQKTSLESFLKLIKKQENALILMLDEIEDPRNFGAIIRTANAFGVDGII 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K +  S + ++ K++ GA+ +I  I +SNL++A++ + + GF     S    +  E+ 
Sbjct: 121 YKKYHQASINDLVIKTSMGAINYIHMIEVSNLSNAIKNLQNEGFWVYATSLLKSQSYEKV 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +K   I+G E KG+ P   + A     + M G +++LNV  A  + L
Sbjct: 181 DYANKSVFIVGNESKGVSPLILKNADQSVRIDMFGDVQSLNVGVATGIIL 230


>gi|262375582|ref|ZP_06068815.1| rRNA methylase [Acinetobacter lwoffii SH145]
 gi|262309836|gb|EEY90966.1| rRNA methylase [Acinetobacter lwoffii SH145]
          Length = 258

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 9/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   +++ +  +     L G H   A L + +RKI  +  T++AL+  D+
Sbjct: 8   SKDNPKIKHLRGLIEQNTYRKKQGQTVLEGTHLSLAWL-HENRKIDSIFTTEHALSHPDF 66

Query: 84  DANLPHPFPVKTVPPQTI-DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           +  L     +  V  +++   +         LA+ T P  +  LD   +    ++L++V 
Sbjct: 67  EKILAKYTGMVFVLSESLYKDLSTLGTSLACLAVVTLPTANYALDFKAD---TLILENVQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A   + I+ TK  +   S  + ++  GA   +       L   L++ 
Sbjct: 124 DPGNVGTLLRSAAAAGIEQIVCTKGSASLWSPRVLRAGMGAHFTLQTFENIALEQILEQF 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                     SS   + L  +        ILG EG+G+     + A     +  PG  ++
Sbjct: 184 Q---IPVYVTSSHRAESLYSKDLRKPCVWILGNEGQGVSDYAMQHA-EAVSIPQPGGQES 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ A ++  +      
Sbjct: 240 LNVAIAGSICFFEMVRQR 257


>gi|254457298|ref|ZP_05070726.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
           bacterium GD 1]
 gi|207086090|gb|EDZ63374.1| RNA methyltransferase, TrmH family, group 3 [Campylobacterales
           bacterium GD 1]
          Length = 226

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +Y    V   + N   KI  L   K+   + ++   +   F VK +P     K+  K 
Sbjct: 1   MLIYAKQPVQYIIKNYPNKIRTLYLAKDVDKK-EYSELMKMNFEVKRIPADAAGKMC-KN 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A HQG+  E         ++  +   ++VL  + D  NIGAI+R+A A   + I+     
Sbjct: 59  ANHQGILAEVDDYELHPFNSFLDKDFVLVLSGLTDVGNIGAIVRTAYALGVEAIVACGIK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   V+ ++++GAL  +P+    N+ D +  + + GF   G         + +IK  +
Sbjct: 119 KLNFEPVM-RTSTGALFDMPFALQHNIHDVMNDLKTSGFCIYGADMGGTDIRDVKIKQKR 177

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL+LG EG+GL  +       +  + M     +LNVS A A+ +
Sbjct: 178 -ALVLGNEGEGLTSRIVSKLDEVVSIQMSHDFDSLNVSVAGAILM 221


>gi|268678807|ref|YP_003303238.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616838|gb|ACZ11203.1| RNA methyltransferase, TrmH family, group 3 [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 227

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 6/226 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGK 107
           + +YG       L +   +I  +   K    +L    AN+     +  +  +    +   
Sbjct: 1   MIIYGKQLFLHLLKHYPSRIKTVFLPKKCDTKLFSHIANVTQK--ICNIDERKAQALC-H 57

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
              HQG   E  PL      A++    L++LD V D  NIGAI+RSA AF  DG+I +  
Sbjct: 58  GGNHQGFIAEIEPLELTPFSAIKQGSFLVILDEVTDVGNIGAIVRSAYAFGADGLILSGM 117

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            + +  A+L +++S A   +P   + +  D L ++   GF   G   D    +++     
Sbjct: 118 KTCNLEAIL-RTSSAAAFELPIALVPSTKDMLNELKQIGFTLYGADMDG-VDVQKVTFAP 175

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K ALI+G+EGKGL PK +E   ++  + M     +LNVS AAA+  
Sbjct: 176 KRALIMGSEGKGLSPKVKERLDTVVSIKMARAFDSLNVSAAAAILC 221


>gi|107028816|ref|YP_625911.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU
           1054]
 gi|116690025|ref|YP_835648.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia
           HI2424]
 gi|105897980|gb|ABF80938.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia AU
           1054]
 gi|116648114|gb|ABK08755.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia
           HI2424]
          Length = 260

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    + H  +     L G H  SA L+  +     +  T+ AL 
Sbjct: 2   KSITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P  + V ++   +VL
Sbjct: 61  HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPAHPLPERVTHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +++           S   + +     +  +A + G EG G+    ++ AT    +  PG
Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|170733360|ref|YP_001765307.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3]
 gi|169816602|gb|ACA91185.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia cenocepacia MC0-3]
          Length = 260

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    + H  +     L G H  SA L+  +     +  T+ AL 
Sbjct: 2   KSITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P  + V ++   +VL
Sbjct: 61  HAEAQAIVARIDMQRIVTLPDALFGQLSNVVNGVGFLLLVDRPTHPLPERVTHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +++           S   + +     +  +A + G EG G+    ++ AT    +  PG
Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|163785954|ref|ZP_02180402.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159877814|gb|EDP71870.1| putative rRNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 265

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 107/258 (41%), Gaps = 7/258 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++    +KSR   +     + G   +S A+     +I  LL   +  +  +  A
Sbjct: 9   QNPLIKQLAQLKEKSRERKKSGLFLIEGKRELSLAIK-GGYEIKTLLFFPDLFSESEAKA 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVN 142
              +   +  +  +   K+  ++   +G+          TL+A+     + L++V +   
Sbjct: 68  MSSYGIEIIEISKEVFQKLAHRDTT-EGVIAVVK-SKDHTLEALTLKSKNPLILVAEAPE 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P NIGAILR+A A S D +I     S   +  + +S+ G +        S+  DA+  +
Sbjct: 126 KPGNIGAILRTADAASVDAVIIANPKSDLYNPNIIRSSVGCVFTTEIAMASS-NDAILYL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             + F          +P   +      A+++G E  GL    ++ AT    + M G+I +
Sbjct: 185 QKYNFNLFSAILQESEPYHTQDYTLPTAIVVGTEATGLTQAWRDAATQNISIPMHGVIDS 244

Query: 263 LNVSNAAAVALYITQNHF 280
           +NVS AA + ++  +   
Sbjct: 245 MNVSVAAGILIFEAKRQR 262


>gi|229829645|ref|ZP_04455714.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
           14600]
 gi|229791634|gb|EEP27748.1| hypothetical protein GCWU000342_01742 [Shuttleworthia satelles DSM
           14600]
          Length = 278

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 100/271 (36%), Gaps = 23/271 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-- 88
           +++    +KSR   +       G+  V      P+  + ++  ++  LA    D      
Sbjct: 11  RQVCQLQKKSRIRRKEGLFVAEGLRMVCE---TPAELVREIYVSERFLAEHGEDRGYRDF 67

Query: 89  ----------------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN- 131
                                  V    ++ +       QG+            + +   
Sbjct: 68  LDSLEAGRNQNRKTQGGQTGPLEVSDPVMEYMSDT-VTPQGILAVVRQPAYQWEELLGGH 126

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             LLM+L+++ DP N+G I R+A      GI+ ++      S  + +S  G+L  +P++ 
Sbjct: 127 KTLLMILENIQDPGNLGTIFRTAEGAGATGILMSRDTVDLFSPKVIRSTMGSLYRVPWLI 186

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +L+  L++    G         +K   +Q         ++G EG GLR  T   A + 
Sbjct: 187 TEDLSSYLKRARESGVCLYAADLQAKCDYDQADCRTACGFLIGNEGSGLRDATAALAEAR 246

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             + M G +++LN + AA + +Y       +
Sbjct: 247 IRIPMGGRLESLNAAMAAGILMYEAARQRRR 277


>gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           RP62A]
 gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 246

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 24/267 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++S   K++  ++  KK        R   +     + G+H +  A  +    I 
Sbjct: 2   EQITSAQNS---KIKNANKLKKK--------RERDKTGLALIEGIHLIEEAYQSQIEVIQ 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             +   + ++    D        V  +  +  + + G     QG          PT D  
Sbjct: 51  LFIVDPDRMSSSIVDYAKE----VYQINLKVAEALSGT-VTPQGFFAIIK---KPTYDKT 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  Q+L++ D + DP N+G ++R+A A   D I+  K  +      + +++ G++ HIP 
Sbjct: 103 QAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I      D    +H +     G + ++             AL+LG EG+G+ P   +  T
Sbjct: 162 I----FDDIYNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
               + + G  ++LNV+ A ++ +Y  
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244


>gi|186476081|ref|YP_001857551.1| tRNA/rRNA methyltransferase SpoU [Burkholderia phymatum STM815]
 gi|184192540|gb|ACC70505.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phymatum STM815]
          Length = 266

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 104/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK+++     +    +  +  L G H  SA L+   +    +  T+ AL 
Sbjct: 2   KAITSRDNPLYKRLKVLAGSTHQQRKSGHALLEGFHLASAYLDVAGQPETCV-VTEGALR 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G+ L    L  P  + V +    +VL
Sbjct: 61  HDEAQAIVARIDERRIVTLPDALFGQLSNVVNGVGMLLLVEKLDLPLPERVTHG--CVVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +SA GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGIGHVFCAPGTAYAWSSKVLRSAMGAHFLLQIHEDIEAPTL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +Q +           S   + + +   +  +A + G EG G+    ++  T    +  PG
Sbjct: 179 IQLL---DVPVAITDSHGAEAIYETDLSGPVAWVFGNEGAGVSQPWRDAVTYRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQCRQ 256


>gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens]
 gi|74736506|sp|Q6IN84|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
           [Homo sapiens]
 gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae),
           isoform CRA_a [Homo sapiens]
 gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens]
 gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
           [synthetic construct]
          Length = 353

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 108/253 (42%), Gaps = 28/253 (11%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDK 103
             L+G+     AL    R + +LL            A L         PV     Q +D 
Sbjct: 50  ELLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAELLRMAEARDIPVLRPRRQKLDT 109

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVA 156
           +   + VHQG+ +E +PL          +       QL +VLD + DP N GA+LRSA  
Sbjct: 110 MCRYQ-VHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRSAHF 168

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---- 212
              D +IT++R S   + V++KS++GA+E +      +LT  LQ     G+   G     
Sbjct: 169 LGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCP 228

Query: 213 ---SSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIK 261
                 S +       + +      L+LG EG GL  + Q +   +  +     +P  ++
Sbjct: 229 STEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGLE 288

Query: 262 ALNVSNAAAVALY 274
           +LNVS AA + L+
Sbjct: 289 SLNVSVAAGILLH 301


>gi|282601244|ref|ZP_05981182.2| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
 gi|282569669|gb|EFB75204.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
          Length = 297

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 8/258 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++     +++   +           +  AL+   + +  L+  +              
Sbjct: 40  YARLTEAQLRNKLEPEKGVFIAESPKVIGTALDAGYKPLSFLMERRQIEGPAAGVLARCP 99

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V T     ++ + G       L     P      +  RN++ + VL+ + D  NIGA
Sbjct: 100 DATVYTADRAVLESLTGYALTRGVLCAMHRPAPRTAEEVCRNARRVAVLEGIVDSTNIGA 159

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDA-LQKMHS 204
           I RSA A   D ++ +            + + G +  +P+ R+    +   +A L ++H+
Sbjct: 160 IFRSAAALGMDAVLLSPSCCDPLCRRAIRVSMGTVFQVPWARLGEDKTQWPEAGLARLHA 219

Query: 205 WGFQTIGLSSDSKK-PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF T  ++ D +  P++       +K+A++LG EG GL  +T     +   + M   + 
Sbjct: 220 MGFTTAAMALDDRALPVDDPALQAAEKLAIVLGTEGDGLAAETIARCDATVMIPMQHGVD 279

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV  AAAVA +  +  
Sbjct: 280 SLNVGAAAAVAFWQLRAR 297


>gi|284031597|ref|YP_003381528.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283810890|gb|ADB32729.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 268

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 8/255 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++  N +     +       G   +  A +        LLA +      D     P
Sbjct: 15  DYVQLREVNLRRLLEEEHGLFIAEGDKVIRRAADAGYEPRSFLLAPRWLDTLADVLEKWP 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---NSQLLMVLDHVNDPH 145
              PV  V  +  +++ G   VH+G            LD +        + + D + D  
Sbjct: 75  EA-PVYLVSAELAEQVTGFH-VHRGALASYRRQAPADLDTLLAGVTHGRIAIFDDIVDHT 132

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA  R+A A   D ++ +   +        K + G +  +P+ R+++   AL ++   
Sbjct: 133 NVGAGFRAAAALGVDAVLVSPTCADPLYRRSVKVSMGTVFQVPWTRVASWPGALDQLREH 192

Query: 206 GFQTIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF T   +  D    L++    ++ K+ALI G EG GL P           + M G + +
Sbjct: 193 GFVTAAFALTDDSISLDELAARRDAKLALIFGTEGHGLSPHVLRQTDLTVKIPMAGGVDS 252

Query: 263 LNVSNAAAVALYITQ 277
           LNV+++AAVA Y T+
Sbjct: 253 LNVASSAAVAFYATR 267


>gi|291297886|ref|YP_003509164.1| RNA methyltransferase TrmH family, group 3 [Stackebrandtia
           nassauensis DSM 44728]
 gi|290567106|gb|ADD40071.1| RNA methyltransferase, TrmH family, group 3 [Stackebrandtia
           nassauensis DSM 44728]
          Length = 339

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 113/269 (42%), Gaps = 12/269 (4%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--P 64
            K  K    K+   A          + +  + +S+         L G + V  AL    P
Sbjct: 54  PKKTKWKQEKERRAAAAEGRAPKAGRPKRPSTQSKRRDSDGVDVLVGRNPVVEALRAHVP 113

Query: 65  SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
              ++ +  T+ +   R            +  V    +D++  + A+HQGL L+  P   
Sbjct: 114 GTALYVVNGTELDDRIRESIRLAGNRGISILEVSKSELDRLC-QGALHQGLGLQVPPFHY 172

Query: 124 PTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                V           LL+ LD V DP N+GA +RSA AF   G++  +R +   +A  
Sbjct: 173 EEYADVLAAAGEHPQPPLLVALDGVTDPRNLGATIRSAAAFGAHGVVVPQRRAAGMTATA 232

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGA 235
            ++++GA   +P  + +NLT A+Q+    G    GL +D +  L       D + L++G+
Sbjct: 233 WRASAGAAARLPIAKATNLTRAIQQAQQAGLLVAGLDADGEIDLFDLPAAVDPLMLVVGS 292

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALN 264
           EG+GL     E+      + +   +++LN
Sbjct: 293 EGRGLSRLVGESCDLRVRIPIASAVESLN 321


>gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63]
 gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
 gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
 gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
 gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
          Length = 265

 Score =  196 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 111/260 (42%), Gaps = 10/260 (3%)

Query: 26  NHRDYKKMQ--SFNQKSRHTSQPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALA 79
           N +D +K++      KS++ ++     + G   V  AL   +      I +    K    
Sbjct: 6   NSKDNEKLKYTKALLKSKNRNKESKFIIEGYRIVVLALECMANLDYVFINEDFENKKEHV 65

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVL 138
           +L  D +  +   +     +   ++V  E   QG+    +       +++ +  + +++L
Sbjct: 66  KLLEDLDKKNT-KIYKTTNKNFKELVDTENT-QGIIGVVSFKKKKLSESINKKDKFVLIL 123

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+G I+R+A +   + II  K      +  + +S  G++  +  I  S   + 
Sbjct: 124 DRIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGSIFDMNIINASQ-DET 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +  + S  F  +    ++    ++     K+AL++G E  G+  +    +  +  + + G
Sbjct: 183 VDMLKSLDFNIVSSYLNTDNFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYG 242

Query: 259 IIKALNVSNAAAVALYITQN 278
             ++LN + ++A+ +Y  + 
Sbjct: 243 KAESLNAAISSAILMYEIKK 262


>gi|326384165|ref|ZP_08205847.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197030|gb|EGD54222.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 288

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 10/259 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           D++ + S +++    + P        +   GV      + +              +  LD
Sbjct: 30  DFRDLNSVDRRPDVPALPGGRVGKGLVIAEGVLVAQRMIASRFAP-HAFFGVDRRMGELD 88

Query: 83  WDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
            D   P     P      + + +++G       LA    P+    +D + +++ + VL+ 
Sbjct: 89  ADLRDPSLRGVPFYRASAEVMAEVIGFHLNRGVLAAARRPVERTVVDVIEHARTVAVLEG 148

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           VND  NIG+I R+A     D ++     +        + + G    +P+ +  +    L 
Sbjct: 149 VNDHENIGSIFRNAAGLGVDAVVFGAGCADPLYRRCVRVSMGHALLVPFAKSQDWPGDLD 208

Query: 201 KMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +   GF T+ L+  +   PL   +   K+A ++GAEG GL   T       A + M   
Sbjct: 209 VLRDSGFTTVALTPGEGSVPLAGAVSGGKVAFLVGAEGPGLAEHTMRRCDVRARIPMSRG 268

Query: 260 IKALNVSNAAAVALYITQN 278
             +LNV+ AAAVA Y    
Sbjct: 269 TDSLNVATAAAVAFYERAR 287


>gi|291537396|emb|CBL10508.1| rRNA methylases [Roseburia intestinalis M50/1]
          Length = 281

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 97/280 (34%), Gaps = 31/280 (11%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---------- 75
           +++  K +    +K++  ++       G      A   P   + Q+  ++          
Sbjct: 6   SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVYVSESFYGTCTQGN 62

Query: 76  --------------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                           L R   +      + +  V      K V      QG+       
Sbjct: 63  MQDCMESCTPKHGEEKLNRKVLERLNETGYEI--VSDNVF-KSVSDTQTPQGILCVIKKP 119

Query: 122 LSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                + ++  Q  L++L+ + DP N+G ++R+       G+I  +      +    +S 
Sbjct: 120 EYALEEMLKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRST 179

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  +P+    +L   +  +                  ++     K A ++G EG GL
Sbjct: 180 MGSIYRVPFFVTKDLPGTISSLKEQQVNVYAAHLKGMLSYDEPDYKKKTAFLIGNEGNGL 239

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  + A +   + M G +++LN + +A++ +Y T    
Sbjct: 240 SDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279


>gi|309803139|ref|ZP_07697236.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           11V1-d]
 gi|309805268|ref|ZP_07699320.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           09V1-c]
 gi|312871826|ref|ZP_07731914.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           3008A-a]
 gi|312873041|ref|ZP_07733101.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874184|ref|ZP_07734218.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2052A-d]
 gi|315653629|ref|ZP_07906549.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325912046|ref|ZP_08174444.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
 gi|325912663|ref|ZP_08175046.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
 gi|329920097|ref|ZP_08276928.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
 gi|308164647|gb|EFO66897.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           11V1-d]
 gi|308165502|gb|EFO67733.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           09V1-c]
 gi|311090254|gb|EFQ48664.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2052A-d]
 gi|311091563|gb|EFQ49947.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092768|gb|EFQ51124.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           3008A-a]
 gi|315488991|gb|EFU78633.1| TrmH family RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325475996|gb|EGC79164.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 143-D]
 gi|325478084|gb|EGC81213.1| RNA methyltransferase, TrmH family [Lactobacillus iners UPII 60-B]
 gi|328936551|gb|EGG32995.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN 1401G]
          Length = 255

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 111/250 (44%), Gaps = 8/250 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 10  NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKL-KLT 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N      +  V     D++   E   Q + +   P+  P   + +  +  ++LD++ DP 
Sbjct: 67  NKIFDKSIILVNQAICDQLSDTE-NSQDIFM-VLPINQPHSFSFKFGK-WVILDNLTDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG+I + +     ++ + +S  G+  H+  ++ +++   L    + 
Sbjct: 124 NVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDIEQVLLDFKNN 182

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G        D   + L       ++ LI+G E  G+  + Q       ++ + G  ++LN
Sbjct: 183 GLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLN 242

Query: 265 VSNAAAVALY 274
            + AA + +Y
Sbjct: 243 AAVAAGIMIY 252


>gi|260598962|ref|YP_003211533.1| putative methyltransferase [Cronobacter turicensis z3032]
 gi|260218139|emb|CBA32949.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Cronobacter
           turicensis z3032]
          Length = 257

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 99/245 (40%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 13  RRQRAEETRVYGENACQALFQSRPESIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 72

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   L    +   ++ L+ V +PHN+GAI+RS  
Sbjct: 73  ELTKASGTE-HHGGVCFLIKKRSGASVEQWLSKAGDEDCVLALEDVGNPHNLGAIVRSCA 131

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I   + +DAL +  + G+  +  SS 
Sbjct: 132 HFGVKGVVVQDA-SLLESGAAVRTAEGGAEHVEPITGDSFSDALAQFRAAGYAIVTTSSH 190

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL +     K+ L+LG E +G+   TQ  A     +   G +++LNVS A  V L  
Sbjct: 191 KGTPLFKATLPKKMVLVLGQESEGISEATQANADLSLSIDGTGNVESLNVSVATGVLLAE 250

Query: 274 YITQN 278
           +  QN
Sbjct: 251 WWRQN 255


>gi|255324641|ref|ZP_05365758.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298547|gb|EET77847.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 267

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 5/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++ +  + +   + G + V AA++  +     +  T+ A  R            V   P 
Sbjct: 24  RAANRKKAKQFLIEGENAVDAAVSTGA--AVDVFVTEKAAERFGDIITACGYMGVYVHPI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156
                K +   A   GL     P+L      +     L+ V    ++P N G ++R++ A
Sbjct: 82  TDKAAKHLSDTATTTGLFALCKPVLWSAGKILNGKPSLVSVPVLTSEPGNAGTLIRTSDA 141

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I         S  +A++++G+L H+P  R  N+ D L ++   G Q +  ++D 
Sbjct: 142 MGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQLRKSGMQIVATAADG 201

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  L +   +   A + G E  GL  +  E A     + + G  ++LN++ AA++ LY +
Sbjct: 202 EVDLAEADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYES 260

Query: 277 QN 278
             
Sbjct: 261 AK 262


>gi|183601561|ref|ZP_02962931.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219683904|ref|YP_002470287.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190940|ref|YP_002968334.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196346|ref|YP_002969901.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219167|gb|EDT89808.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621554|gb|ACL29711.1| possible tRNA/rRNA methyltransferase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249332|gb|ACS46272.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250900|gb|ACS47839.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178682|gb|ADC85928.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793929|gb|ADG33464.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 290

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/268 (23%), Positives = 104/268 (38%), Gaps = 20/268 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85
           Y  +     ++R               ++ AL    + I  L         A      D 
Sbjct: 17  YTNLTELQLRNRLEPSKGIFIAESPKVITRALAAGRQPISLLVEEPWIEGMADIFAFIDE 76

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +     PV    P+ + +I G       LA      L    +   N+  + VL+++ D  
Sbjct: 77  HWGDDIPVYVASPEQLRRITGYRLHRGALAAMHRWELPTVAEVCANATRIAVLENIVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS------NLTDAL 199
           N+GAI+RSA A   D ++ T   S        + + G +  +P+ RI            L
Sbjct: 137 NVGAIMRSAAALDVDAVLVTPSCSDPLYRRAIRVSMGTVFQVPWTRIGGDDVHYWPWQGL 196

Query: 200 QKMHSWGFQTIGLS-SDSKKPLEQEIKN---------DKIALILGAEGKGLRPKTQETAT 249
           +++H  GF T  ++ SD    L+  +           DK+ALI G EG GL   T   A 
Sbjct: 197 EELHGLGFTTAAMALSDDSISLDDLVWRLHANDNTHIDKLALIFGTEGDGLSRHTIANAD 256

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
               + M   + +LNV+ ++AVA Y T+
Sbjct: 257 LTVKIPMSHDVDSLNVAASSAVAFYSTR 284


>gi|312875558|ref|ZP_07735559.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2053A-b]
 gi|311088812|gb|EFQ47255.1| RNA methyltransferase, TrmH family [Lactobacillus iners LEAF
           2053A-b]
          Length = 253

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 111/250 (44%), Gaps = 8/250 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 8   NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKL-KLT 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N      +  V     D++   E   Q + +   P+  P   + +  +  ++LD++ DP 
Sbjct: 65  NKIFDKSIILVNQAICDQLSDTE-NSQDIFM-VLPINQPHSFSFKFGK-WVILDNLTDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A   DG+I + +     ++ + +S  G+  H+  ++ +++   L    + 
Sbjct: 122 NVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDIEQVLLDFKNN 180

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G        D   + L       ++ LI+G E  G+  + Q       ++ + G  ++LN
Sbjct: 181 GLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLN 240

Query: 265 VSNAAAVALY 274
            + AA + +Y
Sbjct: 241 AAVAAGIMIY 250


>gi|111115344|ref|YP_709962.1| rRNA methylase [Borrelia afzelii PKo]
 gi|110890618|gb|ABH01786.1| rRNA methylase [Borrelia afzelii PKo]
          Length = 246

 Score =  196 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/241 (24%), Positives = 117/241 (48%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKTQNIKITKISINELDKIL-KNKDHRG 63

Query: 114 LALETA-----------PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+                   L+  +  +   +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKVEKNKNVKTQTKDFENLLETFKKKENVFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT+++S  +++ + +++SGA +++  I ++N+ + +  +   GF         +   
Sbjct: 124 LVITTQKHSAKDNSTVLRTSSGASQYVKKITVTNINNTINFLKKHGFWIYTGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+   T++ +  +  +   G I +LNVS +A + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLTKQNSDFLIRIPTSGKIDSLNVSVSAGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
           17678]
 gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
           17678]
          Length = 256

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 112/275 (40%), Gaps = 30/275 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  K +EK  ++K                      K R+  +       G+ TV  A
Sbjct: 1   MAYIKSKDNEKFKTIKSL-----------------LASKKRYKEKK--YLAEGLRTVELA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG--LALET 118
           L + +  I  ++  + +   LD          V T+     D++   E   QG  + ++ 
Sbjct: 42  LEHGA-DIDMVILREGSEFDLDL-----KDLRVHTLSKDLYDQVSDTE-NSQGIMVVVKM 94

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L     D  R+ + ++VLD + DP N+G I+R+A A   D I   K      +  + +
Sbjct: 95  RDLSKEDFDPSRHRK-VLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVYNPKVVR 153

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           SA G+  ++  + + +    L  +   G Q +  S D+    ++    D  AL+LG E  
Sbjct: 154 SAMGSGFYMDIL-LESQEVILSILKGAGLQIVSSSLDTDNYYDEVTYADGCALVLGNEAN 212

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G+     E +  +  + M G  ++ NV+ +AA+ +
Sbjct: 213 GINDFWIENSDLLVKIPMYGKAESFNVAISAALLM 247


>gi|262184166|ref|ZP_06043587.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 285

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 9/248 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++    + E   + G + V AA++  S     +  T+ A  R            V   P 
Sbjct: 43  RAASRRKAERFLIEGENAVDAAVSTGSAT--DVFVTEKAAERFAHIVQTCGYMDVYVHPI 100

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM---VLDHVNDPHNIGAILRSA 154
                K +   A   GL     P+L      +     L+   VL   ++P N G ++R++
Sbjct: 101 TDKAAKHLSDTATSTGLFAVCRPVLWTAGKILAGKPRLVSVPVL--TSEPGNAGTLIRTS 158

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DG+I            +A++++G+L HIP  R  N+ D L K+ S G Q +  ++
Sbjct: 159 DAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGKLRSSGMQVLATAA 218

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D +  L +   +   A + G E  GL  +  + A     + + G  ++LN++ AA++ LY
Sbjct: 219 DGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDEADMRVRIPILGRAESLNLATAASICLY 277

Query: 275 ITQNHFAK 282
            +     +
Sbjct: 278 ESVKQQNR 285


>gi|307267644|ref|ZP_07549106.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917333|gb|EFN47645.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 217

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 11/223 (4%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             AL +     + ++     +     D  + H         + I K +      Q +   
Sbjct: 1   MEALKSDFEIEYIVMGEGVKIDIPKGDFEIAH-------TTERIFKKISDTVTPQMVMAI 53

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                      ++   + ++ D++ DP N+G I+R+A AF    I T        +  + 
Sbjct: 54  IKIPKYEENTYIKEKGVYVIADNIQDPGNLGTIIRTADAFGVSAIFTINNCVDIFNPKVL 113

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +++ G++ HIP I  ++    L K+   G +       ++K + +   +DK+A +LG E 
Sbjct: 114 RASMGSIFHIPVIATTS--QILLKLKRRGIKVFATHLKAQKLVHECNISDKVAFVLGNEA 171

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           KG+     +       + M G  ++LNVS AA++ LY +Q   
Sbjct: 172 KGVS--VVDLVDDFVKIPMTGEAESLNVSIAASIFLYESQRQR 212


>gi|310827804|ref|YP_003960161.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308739538|gb|ADO37198.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 290

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 15/268 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K +    QK ++  + +   L G      A      +   +  T   +   + 
Sbjct: 21  SRQNAAVKNVIKLKQK-KNRDREKQFVLEGTKLFMEA-EAWKVEFTAVFVTPQWIEGAEE 78

Query: 84  DANLP------HPFPVKTVPPQTIDKIVGKEAVHQGLA------LETAPLLSPTLDAVRN 131
                         PV TV     + +   +     L                     + 
Sbjct: 79  TVKSAFKRLKDTGIPVFTVDTSVFEAMSALKMPEGVLCTAHKIDASEKFFEKKCKKNGKK 138

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD V DP N+G I+R+A A   DGII + + +   +  + + A G++ H+P ++
Sbjct: 139 CLSYVILDDVQDPGNVGTIIRTADAAGFDGIICSSKTADIYNEKVLRGAMGSVFHLPVLQ 198

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATS 250
              L   +  +   G + IG S   K  L   +   K + +ILG E KG+     +    
Sbjct: 199 TGALEKTVLFLKEQGTRMIGTSLQGKTSLSASLAAQKAVGIILGNESKGMSKSMADLCDD 258

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  L M G  ++LNVS AA + +Y    
Sbjct: 259 LYKLPMYGHAESLNVSVAAGILMYDIAR 286


>gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Staphylococcus epidermidis FRI909]
          Length = 246

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 24/267 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++S   K++  ++  KK        R   +     + G+H +  A  +    I 
Sbjct: 2   EQITSAQNS---KIKNANKLKKK--------RERDKTGLALIEGIHLIEEAYQSQIEVIQ 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             +   + ++    D        V  +  +  + + G     QG          PT D  
Sbjct: 51  LFIVDPDRMSSSIVDYAKE----VYQINLKVAEALSGT-VTPQGFFAIIK---KPTYDKT 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  Q+L++ D + DP N+G ++R+A A   D I+  K  +      + +++ G++ HIP 
Sbjct: 103 QAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I      D    +H +     G + ++             AL+LG EG+G+ P   +  T
Sbjct: 162 I----FDDINNYIHQFNGPVYGTALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
               + + G  ++LNV+ A ++ +Y  
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244


>gi|311740492|ref|ZP_07714319.1| TrmH family rRNA methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304012|gb|EFQ80088.1| TrmH family rRNA methyltransferase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 267

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 5/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++ +  + +   + G + V AA++  +     +  T+ A  R            V   P 
Sbjct: 24  RAANRKKAKQFLIEGENAVDAAVSTGA--AVDVFVTEKAAERFGDIITACGYMGVYVHPI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156
                K +   A   GL     P+L      +     L+ V    ++P N G ++R++ A
Sbjct: 82  TDKAAKHLSDTATTTGLFALCKPVLWSAGKILNGKPSLVSVPVLTSEPGNAGTLIRTSDA 141

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I         S  +A++++G+L H+P  R  N+ D L ++   G Q +  ++D 
Sbjct: 142 MGADGVIFAGETVDPLSCKVARASAGSLFHVPVARDPNIKDVLGQLRKSGMQIVATAADG 201

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  L +   +   A + G E  GL  +  E A     + + G  ++LN++ AA++ LY +
Sbjct: 202 EVDLAEADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYES 260

Query: 277 QN 278
             
Sbjct: 261 AK 262


>gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 264

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 99/257 (38%), Gaps = 3/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWD 84
           ++   K +    ++S+  ++ +     G        +    +I ++   ++   +    +
Sbjct: 6   SNSQIKNLIKLQKQSKVRNELKVFVCEGKKMFEEVASQQRNQIKKVYLAESYYHQYTKQN 65

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVND 143
                    + +  Q + +   +    QG+       +    D      + L++L+ + D
Sbjct: 66  PEYLKGLDFEVLSDQVMKE-ASETITPQGILAIVKQPIYTLKDMTSGDSIRLLLLEDIRD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A      GI+ +K      +  + +S  GA+  +P+    +    L ++ 
Sbjct: 125 PGNLGTMVRTAEGVGMTGIVLSKDSVDMFNPKVIRSTMGAIFRVPFFYAEDFYACLNQIK 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +                ++     K A+++G E  GL  K    +T    + M G +++L
Sbjct: 185 NEEIAIYAAHLQGAVWYDKVSYQGKSAILIGNEANGLSDKATSLSTQRIKIPMEGNVESL 244

Query: 264 NVSNAAAVALYITQNHF 280
           N + AAAV +Y +    
Sbjct: 245 NAAIAAAVLMYESYRQI 261


>gi|62290470|ref|YP_222263.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700394|ref|YP_414968.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|237815979|ref|ZP_04594976.1| RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|254697915|ref|ZP_05159743.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730805|ref|ZP_05189383.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
           292]
 gi|260758525|ref|ZP_05870873.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762349|ref|ZP_05874692.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|62196602|gb|AAX74902.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616495|emb|CAJ11562.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|237789277|gb|EEP63488.1| RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260668843|gb|EEX55783.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672781|gb|EEX59602.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 276

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 127/289 (43%), Gaps = 22/289 (7%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116
           L  ++   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
              ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G EG+GL  +  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL----SRFSK 274


>gi|227833180|ref|YP_002834887.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454196|gb|ACP32949.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 266

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 9/248 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++    + E   + G + V AA++  S     +  T+ A  R            V   P 
Sbjct: 24  RAASRRKAERFLIEGENAVDAAVSTGSAT--DVFVTEKAAERFAHIVQTCGYMDVYVHPI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM---VLDHVNDPHNIGAILRSA 154
                K +   A   GL     P+L      +     L+   VL   ++P N G ++R++
Sbjct: 82  TDKAAKHLSDTATSTGLFAVCRPVLWTAGKILAGKPRLVSVPVL--TSEPGNAGTLIRTS 139

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   DG+I            +A++++G+L HIP  R  N+ D L K+ S G Q +  ++
Sbjct: 140 DAMGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGKLRSSGMQVLATAA 199

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           D +  L +   +   A + G E  GL  +  + A     + + G  ++LN++ AA++ LY
Sbjct: 200 DGEVDLAEADLSQPTAWLFGNEAHGLG-ELLDEADMRVRIPILGRAESLNLATAASICLY 258

Query: 275 ITQNHFAK 282
            +     +
Sbjct: 259 ESVKQQNR 266


>gi|22299511|ref|NP_682758.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295694|dbj|BAC09520.1| tll1968 [Thermosynechococcus elongatus BP-1]
          Length = 259

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 104/280 (37%), Gaps = 27/280 (9%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I+ ++++ + S++  H+ K R+ H                     L L G H +  AL 
Sbjct: 2   IITSRQNQLVRSIRKLHHRKYRQGH---------------------LLLEGTHLIQEALA 40

Query: 63  NPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +          +     +    W   L        V  + +  +        G+      
Sbjct: 41  SGYHLSVVCYTSAWQAKQSPTFWQRLLHRSDRAVEVSEEVLAALC-TTTTPDGVVAVA-- 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                L  +    L + L  + DP N+G I+R+A A   +G++ +          + +++
Sbjct: 98  -DYTPLPTLPLQSLGLCLVTLQDPGNLGTIIRTAAAVGVEGLLLSADCVDMTHPKVLRAS 156

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +G    +P   +++    L+   + G+Q +     +     Q        L++G EG+GL
Sbjct: 157 AGQWFRLPMQTVTDGLATLKTYQAQGWQIVVTRPTAPLIYWQADFCQPTLLVMGNEGQGL 216

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            P  Q+ + +   +     +++LNV+ A AV LY      
Sbjct: 217 PPAYQDASFTALRIPQEPNVESLNVAIATAVLLYEVYRQR 256


>gi|157371980|ref|YP_001479969.1| putative methyltransferase [Serratia proteamaculans 568]
 gi|157323744|gb|ABV42841.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568]
          Length = 366

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 122 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDEE 181

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L+ V +PHN+GAI+RS  
Sbjct: 182 ELAKASGTE-HHGGVCFLIKKRQGLDAQTYLKEAPAKDCVLALEEVGNPHNLGAIVRSCA 240

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS 
Sbjct: 241 HFGVNGVLLQDP-AVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYAIVTTSSH 299

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL Q     K+ L+LG E  GL     +       +   G +++LNVS A  + L  
Sbjct: 300 KGTPLAQAKLPAKMVLVLGQERDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLAD 359

Query: 274 YITQNH 279
           +  QN 
Sbjct: 360 WWRQNQ 365


>gi|254416700|ref|ZP_05030450.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176440|gb|EDX71454.1| RNA methyltransferase, TrmH family, group 3 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 269

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 109/258 (42%), Gaps = 17/258 (6%)

Query: 39  KSRHTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPV 93
           K+  T  P + F+  YG   V  AL+NP   I +LL   NA      +           V
Sbjct: 2   KTNQTKHPRDKFITVYGRKPVLEALSNPDIIIDKLLIANNARGEFIDEIIKQARQRGVKV 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------------DAVRNSQLLMVLDHV 141
               P+ I +I       QG+ ++  P     L            +    +   + LD V
Sbjct: 62  SRESPKYITRISRNGRHDQGVVVDVIPPAMEALSTYLERQQSHPPNQKPQTHKFLALDGV 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            +P N+G I+R+ +A   DGII  ++  P  + ++ K+++G   +   +R + L+DALQ+
Sbjct: 122 KNPSNVGMIIRTCLAAGFDGIILPRKGCPDLNPLVIKASAGTAFYTRVLRCAELSDALQQ 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +    +   GLS  +   L     +     +LG E +G+         +   + +    +
Sbjct: 182 LRQANYTIYGLSGTATSTLYNLSFSPFSVFVLGNETEGINRDHHNLIDTWVSIPIEFPAE 241

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV++AAAV  +  +  
Sbjct: 242 SLNVASAAAVVCFELKRQ 259


>gi|110598736|ref|ZP_01386998.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
 gi|110339639|gb|EAT58152.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
          Length = 266

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 118/263 (44%), Gaps = 14/263 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNA 77
            +  R     +K++ + +  + +   +       G+ TV+    N P   +   L  +  
Sbjct: 2   KQQEREPLSKEKLRKYTRLHQKKQREREGLFLAEGLRTVTELCRNLPDNDMLVALLIRET 61

Query: 78  LARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQ 133
            +    D+   H F   V ++  +   ++  +    QG+       P   P  +  + + 
Sbjct: 62  QSD---DSGFAHAFSGKVFSISDKECLQLA-QTTTSQGVFGVFRQQPDPEPFGEGKKGAS 117

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            ++VLD V DP N+G ILR+AV F  DG+I +       +A   +S++G++  IP+  + 
Sbjct: 118 FIVVLDDVQDPGNVGTILRTAVWFGADGVICSGGTVDRYNAKTVRSSAGSIYAIPHYGVE 177

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ D L ++ + G+  I  S + K   E   + +K  L++G E  G+  + Q  +  +  
Sbjct: 178 HVADELNRLKALGYCIISASLEGKDFREFSFRPEKQVLVIGNEANGVSEQVQTLSDRLVR 237

Query: 254 LHMPGI---IKALNVSNAAAVAL 273
           +   G    +++LN S +AA+ +
Sbjct: 238 IPHAGKKARVESLNASVSAAILI 260


>gi|297562009|ref|YP_003680983.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846457|gb|ADH68477.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 283

 Score =  196 bits (498), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 109/288 (37%), Gaps = 32/288 (11%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP------ 64
           +  S++      +RR  +     ++F Q+ R           G   V  AL         
Sbjct: 5   EFTSIRSPRIKGVRRLAK-----RTFRQRERR------FLAEGPQAVREALAAAVDGAQG 53

Query: 65  -------SRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
                  +  + ++ AT  A+ R     DA      P   V    + ++  +    QG+ 
Sbjct: 54  RSPHGGAASGVVEVYATAEAMQRHIDLVDAARAVDVPTHRVSLDVMSELA-QTVTPQGVI 112

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 +   L+ V + +L  VL HV DP N G +LR+A A   D +I T       +  
Sbjct: 113 A-VCEFVDVPLERVGDVRLAAVLSHVRDPGNAGTVLRTADAAGADVVIFTDASVDPYNGK 171

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIAL 231
             ++++G+L H+P +    +  A+  +   G +        ++ L         +  +  
Sbjct: 172 CVRASAGSLFHLPVVVGVPVARAVDFLRGVGARVWAADGSGQRDLHAVADSGDLDGPVGW 231

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + G E  GL  +T         + + G  ++LN++ AAAV LY T   
Sbjct: 232 VFGNEAWGLPEETVALTDGAVSVPIYGGAESLNLATAAAVCLYTTARQ 279


>gi|260184496|ref|ZP_05761970.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
           CPHL_A]
          Length = 255

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +HQG+AL+  P      D +      +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 4   NHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 64  VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175


>gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
           44728]
 gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
           44728]
          Length = 236

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/238 (23%), Positives = 100/238 (42%), Gaps = 14/238 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEA 109
            G   V+ A+      + ++ AT+ AL+R          F   V  V    +  +   + 
Sbjct: 3   EGPQAVAEAVRAGG--VTEVFATEAALSRHTGLLAEAESFGARVFAVADSGLAALT--DT 58

Query: 110 VH-QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           VH QG+      + +   + VR   L +VLD + DP N G ILR+A A     ++     
Sbjct: 59  VHPQGIVAVCGYVDTTLPETVR---LAVVLDGIADPGNAGTILRTADAAGAQAVVFPHGS 115

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND- 227
               +    +++ G+L H+P +R  +  + L  + + G + +      +  L+  I +  
Sbjct: 116 VDPYNGKCVRASVGSLFHLPVVRGGDTDEHLDALRAKGLRILAADVRGETDLDAAIDDGL 175

Query: 228 ---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                A + G+E  GL     E A     + + G  ++LN++ AAAV LY +     K
Sbjct: 176 LRQPTAWLFGSEAHGLSDALTERADVRVRVPIYGAAESLNLATAAAVCLYASAREHRK 233


>gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
          Length = 253

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 114/269 (42%), Gaps = 18/269 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I S  +S         +++KK+ +   + +         L G+H V  AL    +K+ +
Sbjct: 2   EITSTSNSRV-------KEWKKLNTKKGRKKQNK----YILDGLHLVKEALKAN-KKVEE 49

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LL T +    L+ +  +P    V  +  + + K + +    QG+    +          +
Sbjct: 50  LLIT-SKFEHLN-EIEIPDETKVIMIS-EEVSKSISETQTPQGIFGIVSIEEEKITYPQK 106

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +    ++LD V DP NIG ++R+A A    G+I  +  +   +  + ++  G+  HI  I
Sbjct: 107 DVGAWLMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFHIKVI 166

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              NL+  ++          G   +   +      ++   AL++G EG G+  +  E  +
Sbjct: 167 N-DNLSGWIRHFKDMKVPVFGSELNEHAREYTNGGQHTDFALVMGNEGNGMSKEILEMTS 225

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
              ++ +    ++LNV+ AA + ++  + 
Sbjct: 226 INLYIPIT-NAESLNVAVAAGILMFALKK 253


>gi|157736425|ref|YP_001489108.1| TrmH family tRNA methyltransferase [Arcobacter butzleri RM4018]
 gi|315635558|ref|ZP_07890824.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
 gi|157698279|gb|ABV66439.1| tRNA methyltransferase, TrmH family [Arcobacter butzleri RM4018]
 gi|315480316|gb|EFU70983.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
          Length = 229

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 5/232 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   V   L N  + + ++  +K    +L +   L     +  +  Q    +  K 
Sbjct: 1   MIIYGKQIVLYVLENHPKLVEEVFLSKEIDNKL-FSKFLKLGKKIHRLDNQKAQALA-KG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+ +      +  ++    ++VLD V D  NIGAI R+A +   DGII +   
Sbjct: 59  GNHQGFFLKLSQFDYAPIKELKAMNFILVLDGVTDVGNIGAIARTAYSLGIDGIIASNIK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKN 226
           + + S ++ ++++GAL  +P+       D   ++   GF  IG + D        +  K+
Sbjct: 119 TINNSGIV-RTSAGALLDLPFCIHPRSADLASELIDAGFTLIGATMDGVDLKKYGKIEKS 177

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           DK+AL LG+EG+G+ PK  +       + M     +LNVS AA + +Y  + 
Sbjct: 178 DKVALFLGSEGEGISPKVAKKLDLKVSIKMEHEFDSLNVSVAAGILIYNLKR 229


>gi|305682031|ref|ZP_07404835.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658504|gb|EFM48007.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 285

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 118/281 (41%), Gaps = 19/281 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF 69
           I  + D    +L     D++ ++  + +         +   G   V   L +  P R + 
Sbjct: 3   ITHISDPTDPRLD----DFRDLKHSDNRPDLPGGKGLVIAEGPLIVERLLASRYPVRTLV 58

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DA 128
              A  +        A+L       ++  +T+ ++ G + +H+GL           L + 
Sbjct: 59  GFPAKLDKFLSQPHIADLAAGIDTYSLDRETLAQVAGYD-MHRGLLAAANRAPELGLSEV 117

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++ +  ++VL+ V D  NIG+I R+A     D I+     +        + + G +  +P
Sbjct: 118 IKTATTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLP 177

Query: 189 YI----RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKND------KIALILGAEG 237
           +     + +N    L ++   GFQ + L+      PL+Q + +       KIAL++GAEG
Sbjct: 178 HASFEGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEG 237

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            GL  +T       A + M     +LNV+ AAA+ALY  Q 
Sbjct: 238 PGLTERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQR 278


>gi|163782847|ref|ZP_02177843.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881968|gb|EDP75476.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 239

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 105/239 (43%), Gaps = 9/239 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +  ++G + +  AL    R + ++    ++   R            ++ V  Q ++++ G
Sbjct: 3   DFVVWGRNPIIEALR-AGRDVEKIYVAHDSHPPRELIRLAKEKGVKLQKVSRQKVEELAG 61

Query: 107 KEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            +   QG+    +P+          + ++ +   +V DH+ DP N+G +LR+       G
Sbjct: 62  TKKT-QGVVALLSPVSYVAPQELFSETIKRNSFFLVTDHITDPQNVGNLLRTCEVLGGVG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
            +  +  S   +  + K++SGA+ H+   +++NL   L++    G     +    K   E
Sbjct: 121 ALIPRERSSPMNQTVVKASSGAIFHLEISKVANLGRVLKEFKEMGGWVFAVEKGGKDIRE 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            EI     AL+LG+E KG+     E +  +  + M G   +LNV +A A+A++      
Sbjct: 181 LEIVL-PCALVLGSEDKGVSKSLLEVSDEVLSIPMKGKTTSLNVGSAGAIAMWEAVRKL 238


>gi|300722282|ref|YP_003711566.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628783|emb|CBJ89361.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 357

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 72/286 (25%), Positives = 117/286 (40%), Gaps = 26/286 (9%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +S+ + E   SLK  H     +++ D ++++          + E   +YG +   A   N
Sbjct: 85  VSRPEEE---SLKPDHGGISGKSYIDPEQLR--------RQRLEETRIYGENACLAMFQN 133

Query: 64  PSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
               I +    ++   R    L W A     + V  V  Q + K  G E  H G+     
Sbjct: 134 RPDAIVRAWFVQSVTPRFRNALKWMAANRKAYHV--VDDQELAKASGTE-HHGGVCFLIK 190

Query: 120 PL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 +   L        ++ L++V +PHN+GAI+RS   F   G++  +  +  ES  
Sbjct: 191 KRNGLGVETYLQQAPAKDCVLALENVGNPHNLGAIMRSCAHFGVQGVVL-QDTAMLESGA 249

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILG 234
             ++A G  EHI  I     TD L K  + G+  +  SS      L Q    +K+ L+LG
Sbjct: 250 AVRTAEGGAEHIKGIDADGFTDTLNKFRNEGYTIVTTSSHKGSTALAQATLPEKMVLVLG 309

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
            E  GL     E       +   G +++LNVS A  + L  +  QN
Sbjct: 310 QESDGLSDSIWEDGDIRLSIGGTGRVESLNVSVATGILLAEWWRQN 355


>gi|225023123|ref|ZP_03712315.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944346|gb|EEG25555.1| hypothetical protein CORMATOL_03172 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 308

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 19/281 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF 69
           I  + D    +L     D++ ++  + +         +   G   V   L +  P R + 
Sbjct: 26  ITHISDPTDPRLD----DFRDLKHSDNRPDLPGGKGLVIAEGPLIVERLLASRYPVRTLV 81

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DA 128
              A  +        A+L       ++  +T+ ++ G + +H+GL          +L + 
Sbjct: 82  GFPAKLDKFLSQPHIADLAAGIDTYSLDRETLAQVAGYD-MHRGLLAAANRAPELSLSEV 140

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++ +  ++VL+ V D  NIG+I R+A     D I+     +        + + G +  +P
Sbjct: 141 IKTATTVVVLEGVGDHENIGSIFRNAAGLGVDAILFGNGCADPLYRRSVRVSMGHVLRLP 200

Query: 189 YI----RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKND------KIALILGAEG 237
           +     + +N    L ++   GFQ + L+      PL+Q + +       KIAL++GAEG
Sbjct: 201 HASFEGKHTNWHYGLDQLKESGFQLVSLTPHEDAVPLDQALYDGNGVPYEKIALLVGAEG 260

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            GL  +T       A + M     +LNV+ AAA+ALY  Q 
Sbjct: 261 PGLTERTMRRTDIRARIPMSAGTDSLNVATAAAIALYERQR 301


>gi|224532019|ref|ZP_03672651.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
           VS116]
 gi|224511484|gb|EEF81890.1| RNA methyltransferase, TrmH family, group 3 [Borrelia valaisiana
           VS116]
          Length = 246

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 115/241 (47%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            ++ +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKAQNIKIRRINTNELDKIL-KNKDHRG 63

Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+     +  +                + +  +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNVKTQTKDFEHLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT++ S  +++ + +++SGA +++  I ++N+ + +  +   GF         +   
Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKITVANINNTINFLKKNGFWIYAGDVKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EG+G+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDRKIALILGNEGRGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|115352088|ref|YP_773927.1| tRNA/rRNA methyltransferase SpoU [Burkholderia ambifaria AMMD]
 gi|115282076|gb|ABI87593.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria AMMD]
          Length = 260

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 105/265 (39%), Gaps = 9/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    + H  +     L G H   A L+  +     + AT+ ALA
Sbjct: 2   KSITSRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L     + P  + V ++   +VL
Sbjct: 61  HAEAQAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             ++           S   + +        +A + G EG G+    ++ AT    +  PG
Sbjct: 179 AARL---DVPVALTDSHGAQAVYDCDLAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281
            +++LNV+ AAAV L+    Q   A
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260


>gi|126307628|ref|XP_001370730.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Monodelphis domestica]
          Length = 425

 Score =  195 bits (497), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 35/267 (13%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPP 98
           S P    L+G+   + AL    R + +LL  K        A +  DA      PV+ +  
Sbjct: 115 SAPRLEILFGLAPCTLALRAARRAVTRLLLQKGVVGSGPRAEVARDAE-ALGIPVQLMRR 173

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---------QLLMVLDHVNDPHNIGA 149
           + +D +  +  +HQGL +E APLL       R +         +L ++L+ + DP N+GA
Sbjct: 174 RELDALC-RGQIHQGLCMEVAPLLPKAWPEGRENEPREDPASRRLWLILEEIQDPRNLGA 232

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +LRSA     D +IT++R S   + V++K+++G +E +      +L   L+     G+  
Sbjct: 233 VLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGTMEVMDVFATDDLPGLLKVKAQQGWLV 292

Query: 210 IGLSSDSKKPLEQE-----------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            G        + Q            + +    L+LG EG GL  + +     +  + +PG
Sbjct: 293 AGTVGCPGSVVPQCSDIPITSCLEFLWDRSTLLVLGNEGSGLSHEIRNLCHILLTI-LPG 351

Query: 259 I-----IKALNVSNAAAVALY--ITQN 278
                 +++LNVS AA + L+  I+Q 
Sbjct: 352 RELPPEVESLNVSVAAGILLHSIISQR 378


>gi|325519163|gb|EGC98634.1| tRNA/rRNA methyltransferase [Burkholderia sp. TJI49]
          Length = 260

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    + H  +     L G H  SA L+  +     + AT+ ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-ATEGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P  + V  S   +VL
Sbjct: 61  HAEAQAIVARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPAQPLPERVTQSS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +         DA
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDV-APDA 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L              S   + +     +  +A + G EG G+    ++ A     +  PG
Sbjct: 178 LAA--RLDVPVALTDSHGAQAIYDCDLSGPVAWVFGNEGAGVSAFWRDAAAHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|118616143|ref|YP_904475.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118568253|gb|ABL03004.1| rRNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 268

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D    
Sbjct: 14  DFRDLNSIDRRPDLPSGKGLVIAEGVLVVQRMLASRFSP-RALLGTDRRLLELKEDLA-G 71

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P   V P  + ++VG       LA  +  +       V  ++ + VL+ VND  N+ 
Sbjct: 72  VGAPYYRVSPDVMAQVVGFHLNRGVLAAASRVVEPSVGQVVDGARTIAVLEGVNDHENLS 131

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A       +I     +        + + G    +PY R ++    L  +   GF+
Sbjct: 132 SIFRNAAGLGVHAVIFGSGCADPLYRRAVRVSMGHALLVPYARATDWPAELVALKERGFR 191

Query: 209 TIGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+              + +  +AL++GAEG GL       +     + M     +LN
Sbjct: 192 LLALTPKGDARALPEAMDAVGDQPVALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSLN 251

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 252 VATAAALAFYERAR 265


>gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 271

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 100/288 (34%), Gaps = 31/288 (10%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +++  ++E++  + + H  K R  +                       + G   V   L 
Sbjct: 1   MLTSLQNEQVKYVVNLHKRKFREEN-------------------GEFLIEGWRFVEEGLA 41

Query: 63  NPSR--KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   K+F     KN       +A      PV  V  + + K+   E   QG+      
Sbjct: 42  RGAHLTKVFFCSECKNESWPQLAEALKVKGVPVIEVDERVLRKMSDTE-NPQGILAVVKQ 100

Query: 121 LLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                 D +            +L++LD V DP N G ILR+A+A     +  T+      
Sbjct: 101 SRWTWDDFIEIVNPAGRSAIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLY 160

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  + +S  GA+  +  +      + L+   S          +    L +      +AL+
Sbjct: 161 NLKVLRSTMGAIFSLNIVTHCQPEEILKVCRSHKIPVFVGDVEG-TDLYETHFAQPMALV 219

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G EG G     Q        + M   +++LNV+ A  + LY  +   
Sbjct: 220 VGNEGNGPSAAFQGPGVKRITIPMSHQVESLNVAMATGIILYEVRRRM 267


>gi|72162663|ref|YP_290320.1| rRNA methylase [Thermobifida fusca YX]
 gi|71916395|gb|AAZ56297.1| putative rRNA methylase [Thermobifida fusca YX]
          Length = 268

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 7/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++  N +    ++       G   V  AL    +    LL  +      D      
Sbjct: 16  DYVRLRDTNLRRSLEAKHGLFLAEGEKVVRRALRAGYQPRSLLLTRRRRRVLDDVLDTF- 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147
              PV  V     +++VG   +H+G+         PT+ + V +++ ++VL+ + D  N+
Sbjct: 75  -QAPVYVVDDAVAEQLVGFH-IHRGILASFHRKPLPTVPEVVASARRIVVLEDIVDHTNV 132

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA     D  +   R +        K + GA+  +PY R+++    L+ +   GF
Sbjct: 133 GAIFRSAAGLGVDAAVLAPRCADPLYRRAVKVSMGAVFTLPYARLTDWASGLEDLRRSGF 192

Query: 208 QTIGLSSDS-KKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALN 264
             + L+  +   PL + + ++ K AL+ G+EG GL  +  + A   A + M    + +LN
Sbjct: 193 TLVALTPAADAVPLPEAVHRDGKYALLFGSEGDGLSSRWLDQADVRARIPMAVRDVDSLN 252

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 253 VTAAAAIACYELMR 266


>gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
          Length = 246

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 118/265 (44%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++    ++++ ++  KK        R   +     + GVH +  A  +    I 
Sbjct: 2   EQITSAQN---NRIKQANKLKKK--------RERDKTGLALIEGVHLIEEAYQSGI-VIT 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL A +   ARLD    + +   V  +  +  + + G     QG               +
Sbjct: 50  QLFAIE--PARLDQQI-IAYAQEVFEINMKVAESLSGT-VTPQGFFAIIEKPQYD----I 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +Q ++++D V DP N+G ++R+A A   D +I  K  +      + +++ G++ H+P 
Sbjct: 102 SKAQQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGSVFHLPI 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + + +L   + + +       G + ++    ++    D  AL+LG EG+G+ P+     T
Sbjct: 162 MTL-DLDTFITQFNG---PVYGTALENAVAYKEVTSIDSFALLLGNEGEGVNPELLAHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 QNLIIPIYGKAESLNVAIAGSILLY 242


>gi|269125514|ref|YP_003298884.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268310472|gb|ACY96846.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 273

 Score =  195 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 115/259 (44%), Gaps = 12/259 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++    +    ++       G   +  A+      +  +L ++  L  L  D    
Sbjct: 17  DYTRLRDVQLRKSLEAEHGLFIAEGEKVIRRAVRAGY-PVRSVLTSRRWLEPLS-DLLEG 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              PV     + ++ + G   VH+G LA      L    + +  ++ ++VL+ + D  N+
Sbjct: 75  VQAPVYLADERVLEGVAGF-PVHRGALAAMARTPLPSVPELIAAARRVLVLEDLVDHGNV 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI R A A   D ++ + R +        K + GA+  IPY R+ +    L  + + GF
Sbjct: 134 GAIYRCAAALGVDAVVLSPRCADPLYRRAVKVSMGAVFAIPYARMDDWYHGLGDLRAAGF 193

Query: 208 QTIGLSSD-SKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMP-----GI 259
           + + L+ D S  P+++ +    +++AL+LG+EG GL  +  + A     + M        
Sbjct: 194 RLLALTPDQSAVPIDKAVPAAGERVALLLGSEGDGLSSRWLKEADEAVCIPMSPDAMDRG 253

Query: 260 IKALNVSNAAAVALYITQN 278
           + +LNV  AA++A Y    
Sbjct: 254 VDSLNVVAAASIACYGLMR 272


>gi|296119687|ref|ZP_06838245.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967570|gb|EFG80837.1| putative rRNA methylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 267

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 100/246 (40%), Gaps = 4/246 (1%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           +S    +     + G ++V AA++  +     +  T+ A  +            V   P 
Sbjct: 24  RSSARKKANAFIVEGDNSVDAAVSTGAAT--DVFVTERAADKFADIVTAAGYMDVYVHPI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156
                K +       G+     P+L      +     LL V    ++P N G ++R++ A
Sbjct: 82  TDRAAKSLSDTQTTMGIFALCTPVLWSAGKILNGKPKLLSVPVETSEPGNAGTLIRTSDA 141

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I          + ++++++G+L HIP  R +N+ D L K+ +   Q +  +   
Sbjct: 142 MGADGVIFAGETVDPLGSKVSRASAGSLFHIPTARDTNIKDVLGKLRASNLQILATAPQG 201

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L++       A + G E  GL  +  + A     + + G  ++LN++ AA++ LY +
Sbjct: 202 DATLDEVDLTKPTAWLFGNEAHGLSQELLDAADIRVSIPLRGRAESLNLATAASICLYES 261

Query: 277 QNHFAK 282
                K
Sbjct: 262 AKAQNK 267


>gi|50954851|ref|YP_062139.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951333|gb|AAT89034.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 277

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 107/252 (42%), Gaps = 4/252 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     +     +           ++ AL    R    +L  +  L  ++      
Sbjct: 16  DYSRLTDVALRRVSEPEGGLYIAESTKVITRALAAGHRP-RSVLLQEQWLPDVEPLLAPF 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       + ++ G       LA    P L   +D +R ++ ++VL+ + D  N+G
Sbjct: 75  PEAPVFVGEAAALQRLTGYHLHRGALAAMHRPALPAPVDLLREARRIVVLEDIVDHTNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RS      D ++ + R +        + + G +  +P+ RI    +A   +   GF+
Sbjct: 135 AIFRSVAGLGADAVLVSPRCADPLYRRSVRVSMGTVLQVPWTRIPEWDEAAPLLRDAGFE 194

Query: 209 TIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              L+  D    L++      +++A++LG+EG GL  +    A  +  + M   + +LNV
Sbjct: 195 IAALALADEAVALDEYAVAPPERVAMVLGSEGDGLSRRELAAADRVVAIPMLHGVDSLNV 254

Query: 266 SNAAAVALYITQ 277
           ++A+AVAL+  +
Sbjct: 255 ASASAVALWALR 266


>gi|78066783|ref|YP_369552.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383]
 gi|77967528|gb|ABB08908.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. 383]
          Length = 260

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 104/265 (39%), Gaps = 9/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    + H  +     L G H  SA L+  +     +  T+ AL 
Sbjct: 2   KSITSRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLASAYLDTGATPELCV-TTEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L     + P    V  S   +VL
Sbjct: 61  HAEAQAIVARVDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPVQPLPARVTQSS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAGAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +++           S   + +     +  +A + G EG G+    ++ AT    +  PG
Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281
            +++LNV+ AAAV L+    Q   A
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260


>gi|291288813|ref|YP_003505629.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885973|gb|ADD69673.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 225

 Score =  195 bits (496), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 13/234 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + ++G +TV  AL     K+  +                 +    +T  P+  +   GKE
Sbjct: 1   MIIHGRNTVEEALKLGIVKLLFVKVNSTFDTS-------KYDVETRTYGPKEFEHYYGKE 53

Query: 109 AVHQGLALETAPLLSP----TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           A  QG+A E   +L        D +     +++LD + DP N GAI+R+A  F    I+ 
Sbjct: 54  A--QGIAAEIRDMLPKKFDKAFDEIVEKGSVVLLDRIFDPMNYGAIIRAANCFGIKTILV 111

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
                   ++ + K++SG + +   +   N   AL+K+   G+       + K  L+   
Sbjct: 112 GLDRQAPITSAVCKASSGTIFYTDIVGAVNTATALKKLQENGYTAYAADVNGKVELKDVE 171

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +K  +I+G+EGKG+RP   +TA     + M G I +LNVS +AAV LY   N
Sbjct: 172 FAEKSIIIMGSEGKGIRPALLDTADVHIKIPMNGDIDSLNVSQSAAVILYEYAN 225


>gi|239932361|ref|ZP_04689314.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291440728|ref|ZP_06580118.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291343623|gb|EFE70579.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 272

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 9/241 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A +        LL+ K   A  D    LP
Sbjct: 17  DYTGLTDVELRRRREPAEGLFIAEGEKVIRRARDAGYTMRSMLLSAKWVDALRDVIDELP 76

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              PV TV P+  +++ G   VH+G     +  PL   T D +R ++ +++++ VND  N
Sbjct: 77  --APVYTVTPELAERVTGYH-VHRGALASMQRKPLP-ATADLLRTARRVVIMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   G
Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAG 192

Query: 207 FQTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F  + L+ D K + L++   +  D++AL+LGAEG GL  +    A     + M   + +L
Sbjct: 193 FTLLALTPDEKARSLDEAAPHRMDRVALMLGAEGDGLSTRALAAADEWVRIPMSHGVDSL 252

Query: 264 N 264
           N
Sbjct: 253 N 253


>gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72]
 gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72]
          Length = 263

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 111/274 (40%), Gaps = 27/274 (9%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++   K +      +R   +       G H + AAL+     + +L+ +++  A
Sbjct: 2   KSITSRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGW-PLKRLVVSESGYA 60

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-----------LDA 128
           R +  + L       T+P   +D           L    +P+ +PT             A
Sbjct: 61  RAEIRSLLERA--PATIPALKLDDS---------LVAHVSPVDTPTGILAVADIPPAAPA 109

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L+VLD V DP N+G ILR+A A   + ++ T   +   S    ++  GA  H+ 
Sbjct: 110 PAAGASLVVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTLRAGMGAHFHLR 169

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               ++L   L          +  + D+  K L +      +A + GAEG+GL    +  
Sbjct: 170 IHECTDLAGLLATYPGA---VLATALDARAKSLYETDLRGPVAWLFGAEGQGLSEAAKAL 226

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           AT    + M   I++LNV+ AAAV L+  +   A
Sbjct: 227 ATGTVLIPMAAGIESLNVAAAAAVCLFEQRRQRA 260


>gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
 gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
          Length = 247

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 31/270 (11%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL+++         +++  +     K ++  +     + G H +  AL        
Sbjct: 6   EKISSLQNAKI-------KNWTLLH----KKKYRDETGLFLVEGEHLIGEALAA------ 48

Query: 70  QLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
                 NA+  +  D   P  F  +  V P  + K+    +         A      LD 
Sbjct: 49  ------NAVETIVTDTTSPFDFEHIVEVTPAIMAKLSENVSN----VHYIAVCRQRKLDI 98

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            + ++LL+ LD + DP N+G ++R+A++F  DG+  +       +    +S  GAL HIP
Sbjct: 99  TKQNRLLL-LDGIQDPGNLGTLIRTAISFGFDGVYCSTETCDLYNDKAIRSTQGALFHIP 157

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +R  + +  +  + S G + I  S      + +    + +A ++G EG+G+       A
Sbjct: 158 VVR-KDFSTLIPALQSQGVKVIATSLQESTTMGEIPVTECMAFVMGNEGQGVHQDIIAQA 216

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                + M G  ++LNV+ A  + +Y  ++
Sbjct: 217 DFRVRIEMEG-FESLNVAVAGGIIMYHYRS 245


>gi|88856163|ref|ZP_01130823.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814482|gb|EAR24344.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 267

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 5/252 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D+  +     + R   +           ++ AL         +L  +  L  +       
Sbjct: 16  DFANLTDVALRRRTEPEGGLYIAESSKVIARALRAGHVP-RAVLVLEQWLDDVAELLG-D 73

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV     + ++++ G       LA    P L    + +++++ +++L+ + D  N+G
Sbjct: 74  SDAPVYVGESELLEQLTGFNLHRGALASMHRPALRSVSELIKDARRIVILEDIVDHTNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ RSA A   D ++ T R +        + + G +  +P+ RI N       + + GF 
Sbjct: 134 AVFRSAAALGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRILNWPADAALLKAAGFH 193

Query: 209 TIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              L+  D    L+       +++ALILG EG GL  +T E A S+  + M   + +LNV
Sbjct: 194 LAALALNDDSIDLDTFAANAPERVALILGTEGDGLSRQTIEAADSVVKIPMMHGVDSLNV 253

Query: 266 SNAAAVALYITQ 277
           + A+AV +Y  +
Sbjct: 254 AAASAVGMYTLR 265


>gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 253

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 114/269 (42%), Gaps = 18/269 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I S  +S         +++KK+ +   + R         L G+H V  AL   ++K+ +
Sbjct: 2   EITSTSNSRV-------KEWKKLNTKKGRKRQNK----YILDGLHLVKEALK-VNKKVEE 49

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LL T +    L+ +  +P    V  +  + + K + +    QG+    +          +
Sbjct: 50  LLIT-SKFEHLN-EIEIPDETKVIMIS-EEVSKSISETQTPQGIFGIVSIEEEKITYPQK 106

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +    ++LD V DP NIG ++R+A A    G+I  +  +   +  + ++  G   HI  I
Sbjct: 107 DVGAWLMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFHIKVI 166

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              NL+  ++          G   +   +      ++   AL++G EG G+  +  E  +
Sbjct: 167 N-DNLSGWIRHFKDMKVPVFGSELNEHAREYTNVGQHTDFALVMGNEGNGMSKEILEMTS 225

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
              ++ +    ++LNV+ AA + ++  + 
Sbjct: 226 INLYIPIT-NAESLNVAVAAGILMFALKK 253


>gi|293189810|ref|ZP_06608524.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292821225|gb|EFF80170.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 290

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 108/270 (40%), Gaps = 23/270 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++    +S+   +         + +  A+          L ++  L  L       
Sbjct: 18  DYTRLKDVKLRSKIEPERGLYMAESANVIERAIRAGHTP-RSFLMSRRWLPTLTNLIEAA 76

Query: 89  ------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLL 135
                    P+       ++++ G   +H+G        + P+LD +         ++ +
Sbjct: 77  TGGPDGADVPIFVADEDVLEQMTGFH-LHRGALAAMQRPVLPSLDELLATAHGGTPARRV 135

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL+++ D  N+GA  RSA A   D ++ T + +        + + G +  IP+ R+ + 
Sbjct: 136 VVLENLVDHTNVGAAFRSATALGVDAVLVTPQCADPLYRRSVRVSMGTVFQIPWTRLDSW 195

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEI-------KNDKIALILGAEGKGLRPKTQET 247
              +  +   GF    L+ SD    L+             ++A+++G EG GL  +T   
Sbjct: 196 PGDITALQEAGFTVASLALSDDSVSLDDFASLPALQGPGARLAMVMGTEGDGLGHRTIAA 255

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +     + M   + +LNV+ A+AV  + T+
Sbjct: 256 SDYTVKIPMDHGVDSLNVAAASAVVFWATR 285


>gi|284929697|ref|YP_003422219.1| rRNA methylase [cyanobacterium UCYN-A]
 gi|284810141|gb|ADB95838.1| rRNA methylase [cyanobacterium UCYN-A]
          Length = 260

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 5/255 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDA 85
           +   K+++   +  +   +    F  G H +  A       +  L   K  +     W+ 
Sbjct: 7   NPLIKQIREL-RNVKKRREKGIFFFEGTHLLMTACEENCSLLTLLFTEKWKIENFKLWEI 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                   +TV P+ +  I        G+      L  P   A  + +L ++L+ + DP 
Sbjct: 66  ASRLTKRYETVSPEVLKSIT-TTVNPDGVI--VTALSRPFDKAKTDIKLGLILERLQDPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+AVA + DGI  +      +++ + ++++GA    P +  SNL D +    + 
Sbjct: 123 NLGTIIRTAVATNIDGIWLSSDSVNIDNSKVIRASAGAWFKAPLVITSNLKDIVMNYKNQ 182

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +    ++KK            ++LG EG GL  +    A     + +   I++LNV
Sbjct: 183 GVNVVATLPNAKKNYWDLDLTRPTIILLGNEGSGLSEQLVNMADETVKIPLEQNIESLNV 242

Query: 266 SNAAAVALYITQNHF 280
           +   A+ LY  +   
Sbjct: 243 AVTGALILYEAKRQR 257


>gi|254247898|ref|ZP_04941219.1| rRNA methylases [Burkholderia cenocepacia PC184]
 gi|124872674|gb|EAY64390.1| rRNA methylases [Burkholderia cenocepacia PC184]
          Length = 260

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    + H  +     L G H  SA L+  +     +  T+ AL 
Sbjct: 2   KSITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P  + V ++   +VL
Sbjct: 61  LAEAQAIVARIDAQRIVTLPNALFGQLSNVVNGVGFLLLVDRPAHPLPERVTHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEAEAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +++           S   + +     +  +A + G EG G+    ++ AT    +  PG
Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|225552336|ref|ZP_03773276.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
 gi|225371334|gb|EEH00764.1| RNA methyltransferase, TrmH family, group 3 [Borrelia sp. SV1]
          Length = 246

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRG 63

Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+     +  +                + +  +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   
Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYAGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|296104254|ref|YP_003614400.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058713|gb|ADF63451.1| putative methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 361

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ V +PHN+GA++RS  
Sbjct: 177 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGTDDCVLALEDVGNPHNLGAMMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ DA+++    G+  +  SS 
Sbjct: 236 HFGVKGVLLQDA-ALLESGAAIRTAEGGAEHVQPITGDSVLDAIEQFRKAGYSIVTTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
           +  PL +     K+ L+LG E  GL      +A     +   G +++LNVS A  V L  
Sbjct: 295 AGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSIDGTGNVESLNVSVATGVLLAE 354

Query: 274 YITQN 278
           +  QN
Sbjct: 355 WWRQN 359


>gi|171318091|ref|ZP_02907260.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5]
 gi|171096715|gb|EDT41600.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MEX-5]
          Length = 260

 Score =  195 bits (496), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 103/265 (38%), Gaps = 9/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    +    +     L G H   A L+  +     + AT+ ALA
Sbjct: 2   KSITSRDNPLYKRLKALAGSTSQQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P  + V ++   +VL
Sbjct: 61  HAEAQAIIARIDAQRVVTLPDALFGQLSNVVNGVGFLLLVERPAQPLPERVTHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             ++           S   + +        +A + G EG G+    ++ AT    +  PG
Sbjct: 179 AGRL---DVPVALTDSHGAQAVYDCDLAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281
            +++LNV+ AAAV L+    Q   A
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260


>gi|215432552|ref|ZP_03430471.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           EAS054]
          Length = 197

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 108 EAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +HQG+AL+  P      D +      +   LL+ LD+++DP N+GAI+RS  AF   G
Sbjct: 4   NHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRSVAAFGGHG 63

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++  +R S S +AV  ++++GA   IP  R +NLT  L+     G + IGL +     L+
Sbjct: 64  VLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDAGGGTALD 123

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                D + +++G+EGKGL    ++    +  + M    ++LN S AA V L
Sbjct: 124 DVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL 175


>gi|172060952|ref|YP_001808604.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
 gi|171993469|gb|ACB64388.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria MC40-6]
          Length = 260

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 104/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    + H  +     L G H  +A L+  +     + AT+ ALA
Sbjct: 2   KSITSRDNPLYKRLKALAGSTSHQRRGGQALLEGFHLAAAYLDTGATPELCV-ATEGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L     + P  + V ++   +VL
Sbjct: 61  HAEAQAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             ++           S   + +        +A + G EG G+    ++ AT    +  PG
Sbjct: 179 AARL---DVPVALTDSHGAQAVFDCDLAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|323526473|ref|YP_004228626.1| tRNA/rRNA methyltransferase SpoU [Burkholderia sp. CCGE1001]
 gi|323383475|gb|ADX55566.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1001]
          Length = 262

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 113/263 (42%), Gaps = 11/263 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   R     + T+ ALA
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGRP-DMCIVTEGALA 60

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLM 136
             +  A +       + T+P     ++     VH  G+ L    L +P  D V  +   +
Sbjct: 61  HDEAQAIVSRIEDHLIVTLPDALFGQLS--NVVHGVGMLLLVEKLSAPLPDTVEET--CI 116

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V D  N+G+ILRSA A     +      + + S+ + +S  GA   +      +  
Sbjct: 117 VLDGVQDAGNVGSILRSAAAAGIQRVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVDAA 176

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             + ++       +   S   + +++   + ++A + G EG G+    ++  +    +  
Sbjct: 177 ALIGRLA---VPIVITDSHGAEAIDECDLSGELAWVFGNEGAGVSQAWRDAVSLRVTIPQ 233

Query: 257 PGIIKALNVSNAAAVALYITQNH 279
           PG +++LNV+ AAAV ++     
Sbjct: 234 PGGMESLNVAAAAAVCMFEQCRQ 256


>gi|171920305|ref|ZP_02931653.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|171920685|ref|ZP_02931909.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|185178781|ref|ZP_02964580.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024333|ref|ZP_02997010.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518553|ref|ZP_03004014.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|209554566|ref|YP_002284546.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225550909|ref|ZP_03771858.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|225551088|ref|ZP_03772034.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|171902719|gb|EDT49008.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 1 str. ATCC 27813]
 gi|171903421|gb|EDT49710.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|184209398|gb|EDU06441.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188019013|gb|EDU57053.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188997944|gb|EDU67041.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|209542067|gb|ACI60296.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|225378903|gb|EEH01268.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|225380063|gb|EEH02425.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 239

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 12/230 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   +  A+ N        L +KN       +    +    + V      +       H
Sbjct: 5   FGKKALLDAIGNKQSISKVYLLSKNYE---LINLINKNKITYEIVNEAWFKQ-FDHSLNH 60

Query: 112 QGLA--LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           Q +A  L         L++       + + L+++LD + DP N GAI+R+A AF  D II
Sbjct: 61  QNIAFKLVKKNFQKTGLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANAFGVDAII 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K +  S + ++ K++ GA+ +I  I ++NL++ ++ +   GF     S    +P E+ 
Sbjct: 121 YKKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKV 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +K   I+G E KG+ P   + A     + M G +++LNV  A  + L
Sbjct: 181 DYANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230


>gi|116328523|ref|YP_798243.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331251|ref|YP_800969.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121267|gb|ABJ79310.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116124940|gb|ABJ76211.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 253

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 15/242 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQ-----LLATKNALARLDWDA--NLPHPFPVKTVPP 98
             + +++G  T+         K        L   +N    +       LP    V  +  
Sbjct: 6   TRSEYIFGKRTLIELTEAHIGKEHSFPFTDLYVKENPGTDIVEKILNRLPSFVKVHRISG 65

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
             +D +V     HQG+    +P      D               +VLD + DP N+G IL
Sbjct: 66  SKLDSLV-PGRNHQGVVALKSPFRQQISDKKNLEEYLSEKPGTFLVLDRIQDPGNLGNIL 124

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A  F    II  +R S   + V+ K +SGAL  +    + NL + L+ +   G+  + 
Sbjct: 125 RTAECFGVTNIILPERESAGITPVVEKVSSGALSFLKIFTVKNLANTLELLKENGYWIVS 184

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            S    +   +  +  ++A+++G EG+G++    E +  +  + + G + +LNV+ A  +
Sbjct: 185 TSDRGTENWSKLPELKELAILMGNEGEGVKRILLEKSDFVLRIPIHGNLSSLNVTVATGI 244

Query: 272 AL 273
            L
Sbjct: 245 VL 246


>gi|261822727|ref|YP_003260833.1| methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261606740|gb|ACX89226.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
          Length = 383

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V  +
Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   L     +  ++ L+ V +PHN+G I+RS  
Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGENDCVLALEDVGNPHNLGGIMRSCA 257

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   +    L +    G+  +  SS 
Sbjct: 258 HFGVKGVLVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRHAGYTIVTTSSH 316

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L Q     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 317 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376

Query: 274 YITQNH 279
           +  QN 
Sbjct: 377 WWRQNQ 382


>gi|78778102|ref|YP_394417.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498642|gb|ABB45182.1| RNA methyltransferase TrmH, group 3 [Sulfurimonas denitrificans DSM
           1251]
          Length = 226

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +Y    ++  +     KI +L   K    + ++   +   F +K +PP    K+  K 
Sbjct: 1   MLIYAKQPINYIIQKHPTKIKKLYLAKEMDKK-EYSQLMKIGFEIKRIPPDAAGKMC-KN 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A HQG+  E    +        N + ++VL  V D  NIGAI+R+A A   DG+I     
Sbjct: 59  ASHQGILAEVDEYVLCNYKTFLNYEFVLVLSGVTDVGNIGAIIRTAYALGVDGVIACGVK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S    A++ ++++GAL  +P+    N+ D L  +   GF + G        +       K
Sbjct: 119 SLPIEAIV-RTSTGALFDMPFAIEQNVLDVLNDLKMSGFTSYGADM-GATDIRDVKIKQK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL LG+EG+GL  +       +  + M     +LNVS A A+ +
Sbjct: 177 RALFLGSEGEGLTQRVSSKLDELVSIKMSHEFDSLNVSVAGAILM 221


>gi|25028075|ref|NP_738129.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
           YS-314]
 gi|23493359|dbj|BAC18329.1| putative tRNA/rRNA methyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 282

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 6/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           K+    +       G ++V AA+   +     L  T+ A  + +          V T P 
Sbjct: 34  KTAQRKKTHQFLAEGENSVEAAIATGAAT--DLFVTEQAAEKFEEIVRTAGYMNVYTHPI 91

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156
                K +       G+      +L     AV   S+L+ V     +P N G ++R A A
Sbjct: 92  TDRAAKSLSDTVTTTGIFALCNDVLWTVGKAVNSRSRLVSVPVETREPGNAGTLIRVADA 151

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++        +   + ++++G+L H+P  R  N+ D L ++ S G Q +  ++D 
Sbjct: 152 VGADAVVFAGETVDPQGPKVVRASAGSLFHVPVARNVNIDDVLGQLRSQGLQILATAADG 211

Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+   E+ +   A + G E  GL  +    A     + + G  ++LN++ AA++ LY
Sbjct: 212 EVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKADHRVRIPIRGRAESLNLATAASICLY 271

Query: 275 IT 276
            +
Sbjct: 272 ES 273


>gi|253563391|ref|ZP_04840848.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947167|gb|EES87449.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 270

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R  S            +  AL+     +  L   K+ +             P
Sbjct: 20  LTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T     +  + G       L     P L    +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  + +   + +  +L ++   GF+T+ +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSW---TWIDGSLSRLGDLGFRTVAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  D    ++  +     K+A+I+G EG GL  +T   A  +  + M   + +LNV+ AA
Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256

Query: 270 AVALYITQ 277
           +VA +  +
Sbjct: 257 SVAFWELR 264


>gi|68171778|ref|ZP_00545123.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|67998803|gb|EAM85510.1| RNA methyltransferase TrmH, group 3 [Ehrlichia chaffeensis str.
           Sapulpa]
          Length = 218

 Score =  194 bits (495), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 65/190 (34%), Positives = 111/190 (58%), Gaps = 4/190 (2%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDP 144
               +K V P  I+ ++   + HQG+AL+ + + S T++ V    + S  +++LD V D 
Sbjct: 17  KNINLKQVNPNYINSVLPHNSNHQGIALKASVIDSTTVEEVLNTSKESSTIILLDQVTDI 76

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G+I+RSAV F+ D II     SPSE+  ++K++SGA++ IP + + N+ + ++ +  
Sbjct: 77  HNVGSIIRSAVCFNVDAIILPYHNSPSENCGMSKTSSGAVDMIPIVYVINIVNTIKLLKK 136

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G+   G  +   + L +   + K  +I G+E KG+R  T+E    +  + +   I +LN
Sbjct: 137 AGYWCYGFDAKEGEFLHKTKLDSKKLIIFGSEDKGMRKLTKENCDFLLKIAISKKIDSLN 196

Query: 265 VSNAAAVALY 274
           VSNAAAVALY
Sbjct: 197 VSNAAAVALY 206


>gi|152992314|ref|YP_001358035.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151424175|dbj|BAF71678.1| RNA methyltransferase, TrmA family [Sulfurovum sp. NBC37-1]
          Length = 263

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 116/254 (45%), Gaps = 12/254 (4%)

Query: 34  QSFNQKSRHTSQPENLF-----LYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDAN 86
           Q F+Q S    + +  F     +YG + V  AL +P   I +L  +K       L+    
Sbjct: 10  QRFHQDSDEYLKKKAFFDKVLTIYGRNAVLEALEDPDITIHKLHLSKSNKDAPVLEQMKK 69

Query: 87  LP--HPFPVKTVPPQTIDKIVGKEAVHQGLALE-TAPLLSPTLDAVRNS--QLLMVLDHV 141
           +       V+     ++ +I       QG+AL+          D +  +    ++ LD V
Sbjct: 70  IASKRGIEVQYHDKASLSRISKNAKQDQGVALDIVLEHFGDEKDFISKNINYRIIALDGV 129

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            +P N+G I+RS  A + D I+   + +   S ++ K++ G L  +  I+ SNL + L+ 
Sbjct: 130 TNPQNLGMIIRSCAAGNIDAILLPTKGAAQISPLVIKASVGTLFKMSIIKTSNLKETLKH 189

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G     LSS + K  +++I ++K   +LG E +G+ P  ++   +   + M   ++
Sbjct: 190 FRKEGASLYTLSSHADKSYKEQIYSEKTIFVLGNESEGVSPAVEKLCNASIAIPMQRGVE 249

Query: 262 ALNVSNAAAVALYI 275
           +LNV+  A++  ++
Sbjct: 250 SLNVAVTASLLAFL 263


>gi|145224123|ref|YP_001134801.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145216609|gb|ABP46013.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 252

 Score =  194 bits (495), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 5/236 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +     +       G + V AAL      + ++ AT++A  R           PV  V  
Sbjct: 9   RHTGRRRAARFLAEGPNLVEAALRRG--LVSEVFATESAADRFGPLLA---GAPVHLVTE 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    +         +A+ T P +  T        L+ V   +++P N G ++R A A  
Sbjct: 64  KAAKALSDTVTPVGLVAVCTLPEVDLTEVLAGEPTLVAVPVGISEPGNAGTVIRVADAMG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++         +    ++++G++  IP I   +  D + ++   G Q +        
Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHDAADVVTQLKDAGLQVLATVLGGSV 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L++   +   A + G E  GL  +    AT+   + M G  ++LNV++AAA+ LY
Sbjct: 184 SLDEVDLSGPTAWLFGPEAHGLPAEVAALATAGVEIPMTGGAESLNVASAAAICLY 239


>gi|259505627|ref|ZP_05748529.1| rRNA methylase [Corynebacterium efficiens YS-314]
 gi|259166792|gb|EEW51346.1| rRNA methylase [Corynebacterium efficiens YS-314]
          Length = 272

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 6/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           K+    +       G ++V AA+   +     L  T+ A  + +          V T P 
Sbjct: 24  KTAQRKKTHQFLAEGENSVEAAIATGAAT--DLFVTEQAAEKFEEIVRTAGYMNVYTHPI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156
                K +       G+      +L     AV   S+L+ V     +P N G ++R A A
Sbjct: 82  TDRAAKSLSDTVTTTGIFALCNDVLWTVGKAVNSRSRLVSVPVETREPGNAGTLIRVADA 141

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++        +   + ++++G+L H+P  R  N+ D L ++ S G Q +  ++D 
Sbjct: 142 VGADAVVFAGETVDPQGPKVVRASAGSLFHVPVARNVNIDDVLGQLRSQGLQILATAADG 201

Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+   E+ +   A + G E  GL  +    A     + + G  ++LN++ AA++ LY
Sbjct: 202 EVDLDDAGELLSRPTAWLFGNEAHGLGEELLAKADHRVRIPIRGRAESLNLATAASICLY 261

Query: 275 IT 276
            +
Sbjct: 262 ES 263


>gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera sp. 301]
 gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera sp. 301]
          Length = 261

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 103/261 (39%), Gaps = 12/261 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           + R++  +K+++     SR         L GVH + A +      +  ++    +     
Sbjct: 7   ISRDNSVFKQLKKLADNSRERRSEGQTLLDGVHLIEAYMATFGEPVMIIIPEGKSSIEAT 66

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    P   +P     ++    A   G+         P L A    +  ++L+ + 
Sbjct: 67  GLIQTLTEIPTIMLPTLMFAELT-PVASATGILALVK---IPQLTAPEQPKFALMLEDIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G++LR+A A   + +  +   + + S    +   GA   +P +  +NL   + ++
Sbjct: 123 DPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSPKALRGGQGAQFVLPIVERANL---IAEL 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PG 258
            ++   +   +   +  L  +      A ++G EG GLR +T   A     + M     G
Sbjct: 180 DNFNGNSYATAMHGE-SLYAQDLTQATAFVIGNEGAGLRKQTIAAADKSITIPMTESQFG 238

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN   AAA+ L+  +  
Sbjct: 239 SVESLNAGAAAAICLFERKRQ 259


>gi|194017287|ref|ZP_03055899.1| YsgA [Bacillus pumilus ATCC 7061]
 gi|194011155|gb|EDW20725.1| YsgA [Bacillus pumilus ATCC 7061]
          Length = 247

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 101/264 (38%), Gaps = 31/264 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+  I   K  H  K R                   ++     + G+H V  A
Sbjct: 1   MKYIESAKNTNIKQWKKLHTKKER-------------------TKTGLFLVEGIHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L + +  + +L+ T    +     +++     +  +  +    +   E      A+   P
Sbjct: 42  LKSGA--VKELMVT----SPDKLPSHIDPDIELYELSEEAFSAMTETETPQHIAAVCAVP 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +        +  + L++LD V DP N+G ++R+A A   D +I       + +    +SA
Sbjct: 96  VFEE-----KKYERLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAFNGKTLRSA 150

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  H+P ++ + L   +      G    G + ++ K           ALI+G EG G+
Sbjct: 151 QGSHFHLPILKQT-LQQTIPVCKEQGIPVYGSALNNAKAYRSVTAEGSFALIVGNEGAGI 209

Query: 241 RPKTQETATSMAHLHMPGIIKALN 264
            P+  +      ++ M G  ++LN
Sbjct: 210 NPEILQMTDHNLYVPMYGQAESLN 233


>gi|50122437|ref|YP_051604.1| putative methyltransferase [Pectobacterium atrosepticum SCRI1043]
 gi|49612963|emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 383

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V  +
Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   L        ++ L+ V +PHN+G I+RS  
Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGEHDCVLALEDVGNPHNLGGIMRSCA 257

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   +    L +  S G+  +  SS 
Sbjct: 258 HFGVKGVLVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRSAGYTIVTTSSH 316

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 317 KGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376

Query: 274 YITQNH 279
           +  QN 
Sbjct: 377 WWRQNQ 382


>gi|154509194|ref|ZP_02044836.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798828|gb|EDN81248.1| hypothetical protein ACTODO_01715 [Actinomyces odontolyticus ATCC
           17982]
          Length = 290

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 105/269 (39%), Gaps = 21/269 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++    +S+   +         + +  A+          L ++  L  L       
Sbjct: 18  DYTRLKDVKLRSKIEPERGLYMAESANVIERAIRAGHTP-RSFLMSRRWLPTLTNLIEAA 76

Query: 89  ------HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLM 136
                    P+       ++++ G       LA    P+L    D +  ++       ++
Sbjct: 77  TGGPDGADVPIFVADEDVLEQMTGFHLHRGALAAMQRPVLPTLADLLATARGGAPARRVV 136

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+++ D  N+GA  RSA A   D ++ T + +        + + G +  +P+ R+ +  
Sbjct: 137 VLENLVDHTNVGAAFRSAAALGIDTVLVTPQCADPLYRRSVRVSMGTVFQVPWTRLESWP 196

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEI-------KNDKIALILGAEGKGLRPKTQETA 248
             +  +   GF    L+ SD    L+           + ++A+++G EG GL   T   +
Sbjct: 197 GDIATLQEAGFTVASLALSDDSVSLDDFAALPALQGPDARLAMVMGTEGDGLGRHTIAAS 256

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + M   + +LNV+ A+AV  + T+
Sbjct: 257 DYTVKIPMDHGVDSLNVAAASAVVFWATR 285


>gi|269218391|ref|ZP_06162245.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212250|gb|EEZ78590.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 285

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/281 (23%), Positives = 112/281 (39%), Gaps = 23/281 (8%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           + D H  +L     DY ++     + +  ++           +  A+    R    +LA 
Sbjct: 5   ITDIHDDRLS----DYVRLTDVALRKKLETENGLYMAESSKVIQRAIAAGHRP-RSVLAD 59

Query: 75  KNALARLDWDANLPHP------FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP---T 125
           +  LA L                PV     + + +I G       +A    P L+     
Sbjct: 60  ERWLADLAPSLTKAGGDGEGGDIPVYVCDEEKLQEIAGFHLHRGAIAAMNRPALADPRAM 119

Query: 126 LDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           L+AV      ++VL+++ D  N+GAI RSA A   D +  T   +        + + G +
Sbjct: 120 LEAVGSGPARIVVLENLVDHTNVGAIFRSAAALGVDAVFVTSDCADPLYRRSVRVSMGTV 179

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE-------IKNDKIALILGAE 236
             +P+ RI     + + +   G+ T  L+  D    L+          K+ KIA+ILGAE
Sbjct: 180 FQVPWTRIDGWPRSAKMLSECGYTTAALALTDDAVALDAFSRLEVCSAKDSKIAIILGAE 239

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G GLR  T         + M G + +LNV+ A AVA +  +
Sbjct: 240 GDGLRDSTIAAVDHSVVIPMAGDVDSLNVAAAMAVACWELR 280


>gi|253689696|ref|YP_003018886.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756274|gb|ACT14350.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 382

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 90/246 (36%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V  +
Sbjct: 138 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 197

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   L        ++ L+ V +PHN+G I+RS  
Sbjct: 198 ELIKASGTE-HHGGVCFLIKKRQGLDVREYLKTADEHDCVLALEDVGNPHNLGGIMRSCA 256

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   GI+     +  ES    ++A G  EH+  I   +    L +    G+  +  SS 
Sbjct: 257 HFGVKGILVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLAEFRRAGYTIVTTSSH 315

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L Q     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 316 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 375

Query: 274 YITQNH 279
           +  QN 
Sbjct: 376 WWRQNQ 381


>gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Callithrix
           jacchus]
          Length = 350

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/302 (25%), Positives = 124/302 (41%), Gaps = 29/302 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M L+S  +      L   H+A   RR  R      S               L+G+     
Sbjct: 1   MGLLSTIRGATWGRLVTRHFAHAARRGERPGGDELSRLLLDDLVPTSRQELLFGLSPCLL 60

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           AL    R + +LL            A +         PV     Q +D +   + VHQG+
Sbjct: 61  ALRAARRYVARLLLQAGKAGLQGERAEVLRLAEARDIPVLRPRRQKLDAMCRYQ-VHQGV 119

Query: 115 ALETAPLLS-PTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
            +E +PL   P ++A   S       L +VLD + DP N GA+LR A     D IIT+++
Sbjct: 120 CMEVSPLRPLPWIEAGEASPGDDPQQLWLVLDGIQDPRNFGAVLRCAHFLGVDKIITSRK 179

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS--------DSKKP 219
            S   + V++K+++GA+E +      +LT  LQ     G+   G            SK P
Sbjct: 180 NSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPGPKVPQSSKIP 239

Query: 220 LE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVA 272
           +    + + +    L+LG EG GL  + Q +   +  +     +P   ++LNVS  A + 
Sbjct: 240 ITSSLEFLWDQPTLLVLGNEGSGLSQEVQASCQLLLTILPRRQLPPGFESLNVSVVAGIL 299

Query: 273 LY 274
           L+
Sbjct: 300 LH 301


>gi|227113626|ref|ZP_03827282.1| putative methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 383

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 90/246 (36%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V   
Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEED 198

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   L        ++ L+ V +PHN+G I+RS  
Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGLDVREYLKTAGEQDCVLALEDVGNPHNLGGIMRSCA 257

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   +    L +  + G+  +  SS 
Sbjct: 258 HFGVKGVLVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLTEFRNAGYTIVTTSSH 316

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L Q     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 317 KGTALSQATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376

Query: 274 YITQNH 279
           +  QN 
Sbjct: 377 WWRQNQ 382


>gi|290961735|ref|YP_003492917.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260651261|emb|CBG74383.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 280

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 20/275 (7%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           ++ S + +     RR  R     ++F  K R           G   V  A       + +
Sbjct: 5   ELISPRSARVTAARRLAR-----RNFRGKDR------LFLAEGPQAVREA-AGHGDTLVE 52

Query: 71  LLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           L AT  A  R     +  H     V       +  I       QGL      L +P  + 
Sbjct: 53  LFATAEAAERYADIVSEAHAAGARVHLADETVVADI-STTVTPQGLVGVCRFLDTPFAEI 111

Query: 129 VR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +    +L+ VL HV DP N G +LR A A   + ++ T       +    +++ G+L H+
Sbjct: 112 LAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHL 171

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPK 243
           P      + +A+  +   G + +      +  L+ E+         A + G E  GL  +
Sbjct: 172 PVAVGVPVEEAVAGLRDAGVRILAADGAGEDDLDAELDKGTMGGPTAWVFGNEAWGLPEE 231

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+E A ++  + + G  ++LN++ AAAV LY +  
Sbjct: 232 TRELADAVVRVPIHGKAESLNLATAAAVCLYASAR 266


>gi|13357681|ref|NP_077955.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761850|ref|YP_001752207.1| RNA methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508755|ref|ZP_02958228.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
 gi|11357049|pir||A82931 rRNA methylase UU124 [imported] - Ureaplasma urealyticum
 gi|6899082|gb|AAF30530.1|AE002113_4 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827427|gb|ACA32689.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 3 str. ATCC 27815]
 gi|182675688|gb|EDT87593.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 14 str. ATCC 33697]
          Length = 239

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 12/230 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   +  A+ N        L +KN       +    +    + V      +       H
Sbjct: 5   FGKKALLDAIGNKQSISKVYLLSKNYE---LINLINKNKITYEIVNEAWFKQ-FDHSLNH 60

Query: 112 QGLA--LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           Q +A  L        +L++       + + L+++LD + DP N GAI+R+A  F  D II
Sbjct: 61  QNIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAII 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K +  S + ++ K++ GA+ +I  I ++NL++ ++ +   GF     S    +P E+ 
Sbjct: 121 YKKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQPYEKV 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +K   I+G E KG+ P   + A     + M G +++LNV  A  + L
Sbjct: 181 DYANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230


>gi|325674569|ref|ZP_08154256.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
 gi|325554155|gb|EGD23830.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
          Length = 268

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY+ + S +++         +   GV  V   L +       LL     L  L  D    
Sbjct: 17  DYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTP-NSLLGVDRRLTELSADLE-G 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + ++VG       LA    P      D +R+++ + VL+ VND  NIG
Sbjct: 75  VDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAVLEGVNDHENIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D I+     +        + + G    +P+ +I      L  +   GFQ
Sbjct: 135 SMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPRGLNILRDRGFQ 194

Query: 209 TIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ +   P L + +  +++AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 195 LISLTPNPSAPTLAEAMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGTDSLNVAT 254

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 255 AAAMAFYERIR 265


>gi|170699888|ref|ZP_02890918.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria
           IOP40-10]
 gi|170135210|gb|EDT03508.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ambifaria
           IOP40-10]
          Length = 260

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 104/265 (39%), Gaps = 9/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    +    +     L G H   A L+  +     + AT+ ALA
Sbjct: 2   KSITSRDNPLYKRLKALAGSTSQQRRGGQALLEGFHLAGAYLDTGATPELCV-ATEGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L     + P  + V ++   +VL
Sbjct: 61  HAEAQAIIARIDAQRVVTLPDALFGQLSNVVSGVGFLLLVDRPVQPLPERVTHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             ++           S   + +        +A + G EG G+    ++ AT    +  PG
Sbjct: 179 AGRL---DVPVALTDSHGTQAVYDCDLAGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281
            +++LNV+ AAAV L+    Q   A
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260


>gi|227505050|ref|ZP_03935099.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198414|gb|EEI78462.1| TrmH family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 267

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 102/246 (41%), Gaps = 5/246 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++    +     + G + V AA++  +     +  T+ A  R            V   P 
Sbjct: 24  RAAARKKANQFIIEGENAVDAAVSTGAAT--DVFVTEKAAERFQDIVTACGYMDVYVHPI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156
                + +   A   GL     P+L      +     L+ V    ++P N G ++R++ A
Sbjct: 82  TDKAARHLSDTATTTGLFALCKPVLWSAGKILNGKPNLVSVPVLTSEPGNAGTLIRTSDA 141

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DG+I            +A++++G+L HIP  R  N+ D L ++   G Q +  ++D 
Sbjct: 142 MGADGVIFAGETVDPLGCKVARASAGSLFHIPVARDPNIKDVLGQLRKSGMQILATAADG 201

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  L +   +   A + G E  GL  + QE A     + + G  ++LN++ AA++ LY +
Sbjct: 202 EVDLAEADLSQPTAWLFGNEAHGLG-ELQEEADMRVRIPILGRAESLNLATAASICLYES 260

Query: 277 QNHFAK 282
                +
Sbjct: 261 AKALNR 266


>gi|149372541|ref|ZP_01891653.1| putative rRNA methylase [unidentified eubacterium SCB49]
 gi|149354584|gb|EDM43148.1| putative rRNA methylase [unidentified eubacterium SCB49]
          Length = 263

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 105/259 (40%), Gaps = 8/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   KK+ +   KSR   +     + G   VS A+      +  L   +  +A L+   
Sbjct: 9   NNPLIKKINALTDKSRERKKQGVFIVEGAREVSLAIKGHHEILTLLFCPE--IADLNALP 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVLDHVN 142
           N+       +V      KI    A  +G+          TLDA+   + + L+++ +   
Sbjct: 67  NVADSVEKISVSLDVYQKIA-YRATTEGVIAIVK-NSKTTLDALVFPKQNPLILIAEAPE 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P NIGA+LR+A A   D ++     +   +  + +S+ G +        S+  D +  +
Sbjct: 125 KPGNIGALLRTADAAHVDAVLIANPRTDLYNPNIIRSSVGCVFTNQVAMASS-EDIIAFL 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                          +P   +      A+++G E  GL    ++ +T+  H+ M G I +
Sbjct: 184 KKNNISIYSAILQESQPYHTQDFTTGCAIVVGTEATGLSQAWRDASTANIHIPMQGEIDS 243

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNVS AAAV L+  +    
Sbjct: 244 LNVSVAAAVLLFEAKRQRG 262


>gi|227329037|ref|ZP_03833061.1| putative methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 383

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N S  I +    +    R          +      V  +
Sbjct: 139 RRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTPRFRDALRWMAANRKAYHVVEEE 198

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   L        ++ L+ V +PHN+G I+RS  
Sbjct: 199 ELIKASGTE-HHGGVCFLIKKRQGMDVREYLKTAGEHDCVLALEDVGNPHNLGGIMRSCA 257

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   +    L +  + G+  +  SS 
Sbjct: 258 HFGVKGVLVQDA-ALLESGAAVRTAEGGAEHVKAINADDFLSVLTEFRNAGYTIVTTSSH 316

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 317 KGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIGGTGKVESLNISVATGILLSE 376

Query: 274 YITQNH 279
           +  QN 
Sbjct: 377 WWRQNQ 382


>gi|150025910|ref|YP_001296736.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772451|emb|CAL43933.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 262

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 99/257 (38%), Gaps = 4/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +    +KS+   +     + G   +  A       I  +L   + +++     
Sbjct: 8   QNPYIKSLVLLQEKSKARKKSGTFLIEGQREIELA-QKGGFVIETILFLPDLISQKQITQ 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  +  +  +   K+  ++     LA  +T P L   L  +  + L+++ +    P
Sbjct: 67  ITNQAHDIIEISKEVYQKLAYRDTTEGILAVAKTKPFLLSDL-KLSQTPLILIAEAPEKP 125

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+LR+A A + D +I     S   +  + +S+ G L        +   + +  +  
Sbjct: 126 GNIGALLRTADAANLDAVIIANPKSDLYNPNIVRSSVGCLFTTQIATGT-TQEIITYLKE 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   +  +  P   +      AL++G E  GL  + +  AT    + M G I ++N
Sbjct: 185 NKINFYCATLQNATPYHTQDYTPPTALVVGTEATGLTQEWRNNATQNIIIPMQGEIDSMN 244

Query: 265 VSNAAAVALYITQNHFA 281
           VS AAA+ ++  +    
Sbjct: 245 VSVAAAILIFEAKRQRG 261


>gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
 gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
          Length = 263

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 12/260 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           R N R  +   +F  ++R +S    + + G H V  AL +    +  +  ++    R++ 
Sbjct: 11  RTNPRLKQLRAAFQGQARLSS--GLIAVEGEHMVEEALKSGQ-ALKTVFLSE----RMEL 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHV 141
            A +P    V +V       I  +    QG+A    P        +      L+++   +
Sbjct: 64  PAYVPASVEVVSVASDVFASIA-ETRTPQGIAALLVPPAHSVEKMLEGPGEALILIAVGL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++RSA AF   G++TT       +    ++++G++  +P    +   DA++ 
Sbjct: 123 QDPGNLGTLIRSAEAFGATGVLTTPGTVSPWNQKAMRASAGSVFRLPVAVAT--PDAMET 180

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   G + +    D    + +       A+++G EG GL       A     +  PG ++
Sbjct: 181 LEQQGIKLLAAMKDDAVAIGEADLTVGSAILIGNEGAGLNEDWLRLADQRVTIPCPGWVE 240

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN + A ++ LY       
Sbjct: 241 SLNAAVAGSILLYEASRQRG 260


>gi|146312707|ref|YP_001177781.1| putative methyltransferase [Enterobacter sp. 638]
 gi|145319583|gb|ABP61730.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638]
          Length = 365

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 98/245 (40%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 121 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDE 180

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +        ++ L+ V +PHN+GA++RS  
Sbjct: 181 ELTKASGTE-HHGGVCFLIKKRNGTTVKQWVSQADADDCVLALEDVGNPHNLGAMMRSCA 239

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ DA+++    G+  +  SS 
Sbjct: 240 HFGVKGVLLQDA-AIVESGAAIRTAEGGAEHVQPITGESVLDAIEEFRKAGYSIVTTSSH 298

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
           +  PL Q     K+ L+LG E  GL      TA     +   G +++LNVS A  V L  
Sbjct: 299 TGTPLFQATLPRKMVLVLGQERDGLSDAALSTADLSVSIEGTGKVESLNVSVATGVLLAE 358

Query: 274 YITQN 278
           +  QN
Sbjct: 359 WWRQN 363


>gi|237721658|ref|ZP_04552139.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449454|gb|EEO55245.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 267

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 102/248 (41%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R  S            ++ ALN     +  L   K+               P
Sbjct: 20  LTEAQLRNRIESDKGLFIAESPKVINVALNAGYEPLALLCEQKHITGDAADIIERCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P      +  R ++ + V++ V D  NIGAI R
Sbjct: 80  VYTGARELLATLTGYTLTRGVLCAMHRPTPKSVEEICRGARRIAVIEGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D I+ T+      +    + + G++  IP+  +        ++H  GF+T+ +
Sbjct: 140 SAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIPWAWLDGSP---NELHKLGFRTVAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  +    ++  I     K+A+++G EG GLR +T   A  +  + M   + +LNV+ A+
Sbjct: 197 ALTEKSISIDSPILATEPKLAIVMGTEGDGLRNETITEADYVVRIPMANGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           A+A +  +
Sbjct: 257 AIAFWQLR 264


>gi|329766852|ref|ZP_08258380.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
 gi|328837577|gb|EGF87202.1| hypothetical protein HMPREF0428_00077 [Gemella haemolysans M341]
          Length = 251

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 12/250 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +Q   + +++  +     + G H V  A+   +  + ++  +++     ++  
Sbjct: 6   SNKKIKDIQKLKE-NKNIKKYGKYLIEGKHLVEEAMQ--ANVVEEIFISESFD---EYKL 59

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  V    +  +       QG+       +      ++  + +++LD V DP 
Sbjct: 60  IEAFQGEITKVADSVMRHLSDTITT-QGIIAVCN--IEEKKLDIKKYKKVLILDRVQDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A AF+ D II  K  +      + +S  G+  HI      +L D L+ M   
Sbjct: 117 NLGTIIRTADAFAFDCIILGKGTTSLYGQKVIRSTQGSNFHIDCFDNVDLVDLLEHMKD- 175

Query: 206 GFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            F     S  + K +EQ       +A+I G EG G+  +  +   ++  + MPG  ++LN
Sbjct: 176 -FSIFATSLKADKYIEQLDNIVGNVAVIFGNEGSGVSEEILDKVNNLLKISMPGKAESLN 234

Query: 265 VSNAAAVALY 274
           VS AA + ++
Sbjct: 235 VSIAAGIVMH 244


>gi|291556141|emb|CBL33258.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
          Length = 303

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 9/237 (3%)

Query: 46  PENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
              +F+    TV   AL+   + I  L   K    R +         PV T   + +  +
Sbjct: 60  EHGIFIAESQTVIEVALDAGCKPISMLTDRKYINDRANGIIERCGDIPVYTADSKIMSGL 119

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            G E     L     P      +  RN++ + VL+++ D  N GAI+RSA A   D ++ 
Sbjct: 120 TGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGAIIRSAAALGIDAVLI 179

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGFQTIGLSS-DSKK 218
           T            + + G +  IP+  I       Q      ++S GF+T  ++  D+  
Sbjct: 180 TPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNSLGFKTAAMALTDNSV 239

Query: 219 PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ +     +++A+ILG+EG GL  KT +       + M   + +LNV  AAAVA 
Sbjct: 240 SIDDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAAVAF 296


>gi|259500536|ref|ZP_05743438.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|302191226|ref|ZP_07267480.1| rRNA methylase [Lactobacillus iners AB-1]
 gi|309810255|ref|ZP_07704100.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
           2503V10-D]
 gi|259167920|gb|EEW52415.1| TrmH family RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|308169527|gb|EFO71575.1| RNA methyltransferase, TrmH family [Lactobacillus iners SPIN
           2503V10-D]
          Length = 255

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 112/250 (44%), Gaps = 8/250 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 10  NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKL-KLT 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N      +  V     D++   E   Q + +   P+  P   + +  +  ++LD++ DP 
Sbjct: 67  NKIFDKSIILVNQAICDQLSDTE-NSQDIFM-VLPINQPHSFSFKFGK-WVILDNLTDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A S DG+I + +     ++ + +S  G+  H+  ++ +++   L    + 
Sbjct: 124 NVGTIIRTADAASFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TDIEQVLLDFKNN 182

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G        D   + L       ++ LI+G E  G+  + Q       ++ + G  ++LN
Sbjct: 183 GLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLN 242

Query: 265 VSNAAAVALY 274
            + AA + +Y
Sbjct: 243 AAVAAGIMIY 252


>gi|126662021|ref|ZP_01733020.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
 gi|126625400|gb|EAZ96089.1| putative rRNA methylase [Flavobacteria bacterium BAL38]
          Length = 264

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 102/258 (39%), Gaps = 5/258 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WD 84
            +   K +    +K++   Q     + G   +  AL      +  +L     ++ L+  +
Sbjct: 8   QNPFIKSLVQLQEKAKVRKQTSTFIIEGKREIELALKGDYE-LETILFLPEIISELELKN 66

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
               +   +  +  +   K+  ++     LA+     L+ +   +  + L+++ + +  P
Sbjct: 67  LIKSNGVDIIEISKEVYKKLAYRDTTEGILAIAKTKSLALSELKLSKNPLILIGESLEKP 126

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAILR+A A + D +I     S   +  + +S+ G L       +    + +  + +
Sbjct: 127 GNVGAILRTADAANIDAVIIANPKSDLYNPNIVRSSVGCLFTRQIA-VGTTEEVIAYLKA 185

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   +         +      AL++G E  GL  K +  +T    + M G I ++N
Sbjct: 186 NNISIYSATLQDSTEYHTQNYTTPTALVVGTEATGLSEKWRIESTKNIIIPMQGEIDSMN 245

Query: 265 VSNAAAVALYI--TQNHF 280
           VS AAA+ L+    Q  F
Sbjct: 246 VSVAAAILLFEAKRQRQF 263


>gi|224532773|ref|ZP_03673390.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           WI91-23]
 gi|224512391|gb|EEF82775.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           WI91-23]
          Length = 246

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKIQNIKITRINTNELDKIL-KNKDHRG 63

Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+     +  +                + +  +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   
Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|269976319|ref|ZP_06183315.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           28-1]
 gi|306817739|ref|ZP_07451481.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|269935648|gb|EEZ92186.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           28-1]
 gi|304649553|gb|EFM46836.1| RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 354

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 123/327 (37%), Gaps = 66/327 (20%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           +   ++I + K + +   +R+    K         R  ++     ++G + VS A     
Sbjct: 30  QAYRDRIAAEKKATHTNAQRSRAAAK------DHYRPHTRAGAELIFGRNPVSEA-AVAG 82

Query: 66  RKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQ--------- 112
               +L      +         +       P++      +D++  +  VHQ         
Sbjct: 83  VPFKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLT-EGGVHQGIAAELCAY 141

Query: 113 ---------------------------------------GLALET-----APLLSPTLDA 128
                                                  G+  ET     AP  +     
Sbjct: 142 QYLDVMELWDLAVARAEAAGRAASAGCAVVSPAVHEVPSGVLGETPKSDLAPHETVATKP 201

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             +  LL+ LD V DPHN+GA+LRSA AF  DG+I  +  + S +A   K ++GA   +P
Sbjct: 202 PTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVP 261

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247
             + +NLT ALQ +   G   IGL       L      D  + ++ G+EG+G+    ++T
Sbjct: 262 VAQATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDT 321

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  + +   +++LN + A  +ALY
Sbjct: 322 CDQIVSIPIAPRMESLNAAVATGIALY 348


>gi|317472890|ref|ZP_07932196.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
 gi|316899610|gb|EFV21618.1| SpoU rRNA methylase [Anaerostipes sp. 3_2_56FAA]
          Length = 228

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 88/217 (40%), Gaps = 6/217 (2%)

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
           P  +  ++  + + L     +       P + V P+   +I   E   QG+        S
Sbjct: 12  PEEQRAKVFVSSDFLKLHGEEL---KGIPFEEVSPKVFREISDTE-TPQGILSLVKMKQS 67

Query: 124 PTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              + + R+   +++L+++ DP N+G ++R+       GII ++      +  + +S  G
Sbjct: 68  TLSEILKRSGSSILLLENLQDPGNLGTLIRTGEGAGVSGIIMSRDTVDIYNPKVIRSTMG 127

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++  +P+    +L + ++ +            +       E  +   A ++G EG GL  
Sbjct: 128 SIFRVPFTYTEDLAETVEYLRQQSVHVYAAHLNG-TDYTDESYDKISAFLIGNEGNGLTD 186

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +    A     + M G +++LN + A  + +Y  +  
Sbjct: 187 RIAALADKRIRIPMEGRVESLNAAMAGGLLMYEARRQ 223


>gi|296138567|ref|YP_003645810.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296026701|gb|ADG77471.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 266

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/256 (23%), Positives = 110/256 (42%), Gaps = 11/256 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++   T     +   GV  V   L +       ++ T     +LD  A   
Sbjct: 17  DFRDLSTADKRPDTTR--GVVLAEGVPVVERMLASRFAP-HAIMGT---APKLDRLAGQA 70

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P   V    + ++VG       LA    P        +  +++++VL+ VND  N+G
Sbjct: 71  PAVPRYAVTADLMAEVVGFHLNRGVLAAAERPAPLDPARLLDEARIVVVLEGVNDHENLG 130

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHSW 205
           +I R+  A   D ++   R S        + + G +  +P+  +       D L  +   
Sbjct: 131 SIFRNCAALGADAVLFGPRCSDPLYRRAVRVSMGHVLLVPFAHLPAAGWPGDGLALLAER 190

Query: 206 GFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           GF+T+ L+   +  + Q +  + +++AL++GAEG GL  +    A   A + M     +L
Sbjct: 191 GFRTVALTPSGESTVAQALAGRPERVALVVGAEGPGLSAEMLAAADVRAAIPMHRGTDSL 250

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A AVALY   + 
Sbjct: 251 NVATATAVALYECMSQ 266


>gi|281358305|ref|ZP_06244787.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281315132|gb|EFA99163.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 273

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 111/283 (39%), Gaps = 19/283 (6%)

Query: 1   MNL--ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS 58
           M    I+  +++ +      H  KLR      K+  +  +  R  ++      YG+  V 
Sbjct: 1   MEFVKITSTQNDSVK-----HVIKLRDRRPREKEQLTVLEGYRELTRARE---YGMEIV- 51

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
                P          +N    L+  A+      V  V P  ++K+  +E     +A+  
Sbjct: 52  EVFFAPEH-----FLGQNEFPLLETFAS--EGVKVCQVAPFLLEKMAYRERPEGLIAIAK 104

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
               +     VR + L +V + V  P N+G++LRSA A   DG I   + +   +  + +
Sbjct: 105 MKRHTLAEMPVRPNGLYLVAEAVEKPGNLGSMLRSADAAGVDGFIICNKCTDIYNPNVIR 164

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +++GAL  +P     N  +A   +     +T+  +  + +          +A+++G E  
Sbjct: 165 ASTGALFSVPLAEAEN-QEAYDWLKKNNIRTLAATPHTDQIYTDVDMTQAVAIVVGTEQT 223

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           GL     E +     + M G I +LNV+ A  + LY       
Sbjct: 224 GLTELWMEHSDLPVRIPMLGKIDSLNVATATTILLYEAARQRN 266


>gi|312138435|ref|YP_004005771.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311887774|emb|CBH47086.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 268

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY+ + S +++         +   GV  V   L +       LL     L  L  D    
Sbjct: 17  DYRDLNSSDRRPDLPGGKGLVIAEGVLVVQRMLASRFTP-NSLLGVDRRLTELSADLE-G 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + ++VG       LA    P      D +R+++ + VL+ VND  NIG
Sbjct: 75  VDVPFYRTTADVMAQVVGFHLNRGVLAAAHRPPALDVEDVLRDARTVAVLEGVNDHENIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D I+     +        + + G    +P+ +I      L  +   GFQ
Sbjct: 135 SMFRNAAGLGVDAILFGAAVADPLYRRAVRVSMGHALRVPFAQIPEWPRGLNILRDRGFQ 194

Query: 209 TIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ +   P L + +  +++AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 195 LISLTPNPAAPTLAEAMTGERVALLLGAEGPGLTEDAMRVTDVRARIPMSAGTDSLNVAT 254

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 255 AAAMAFYERIR 265


>gi|227487737|ref|ZP_03918053.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542376|ref|ZP_03972425.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092239|gb|EEI27551.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181574|gb|EEI62546.1| rRNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 276

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 15/278 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  + D +  +L     DY+ +   + +         +   G   V   L      +  +
Sbjct: 4   IIRIDDPNDPRLD----DYRDLNHSDTRPDLPGGKGLVIAEG-SLVIPRLLESRFPVRSI 58

Query: 72  LATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DA 128
           L  +  L  L         +  PV  V  + + ++ G + +H+GL          ++ + 
Sbjct: 59  LGFQPKLDSLLAALGDAGANDVPVYEVTREVLAEVAGFD-MHRGLVAAADRAPEYSVGEV 117

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V  +  L +L+ V D  NIG+I R+A     DG++     +      + + + G +  +P
Sbjct: 118 VDGASTLCILEGVGDHENIGSIFRNAAGLGIDGVLFGAGCADPLYRRVVRVSMGHVLRLP 177

Query: 189 YIRI----SNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           Y  +    +N    L  +   GFQ I L+   ++    +      K A+++GAEG GL  
Sbjct: 178 YAHMEGKTTNWQHGLAYLQEKGFQIIALTPNPEAANLQDVIDPTKKTAILVGAEGPGLTE 237

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    A + M     +LNV+ AAA+  Y    H 
Sbjct: 238 HAMRATDVRARIPMQPGTDSLNVATAAAIGFYEALRHR 275


>gi|320096169|ref|ZP_08027762.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976914|gb|EFW08664.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 299

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 111/268 (41%), Gaps = 20/268 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++    ++R   +           ++ AL+        L+A ++         +  
Sbjct: 18  DYTRLKDVKLRARLEPERGLYMAESTSVITRALDAGHSPRSFLMAQRHLPGLAGAIESAT 77

Query: 89  H-----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------LLMV 137
                 P P+ T P + ++++ G       LA    P L    + +  ++       ++V
Sbjct: 78  GSADGGPVPIFTAPEEVLEQLTGFHLHRGALAAMHRPALPRADELLATARGGAPARRVVV 137

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + D  N+GA+ RSA A   D ++ T   +        + + G +  +P+ R+    D
Sbjct: 138 LEDLVDHTNVGAVFRSAAALGVDAVLVTPSCADPLYRRSVRVSMGTVFQVPWTRLEAWPD 197

Query: 198 ALQKMHSWGFQTIGLS-SDSKKPLEQ-------EIKNDKIALILGAEGKGLRPKTQETAT 249
            +  +H  GF    L+ SD   PL+             K+A+++G EG GL  +T   + 
Sbjct: 198 -MGALHGAGFTVAALALSDEAVPLDDFAALPVLAAPGAKLAMVMGTEGDGLGRRTIAASD 256

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
               + M   + +LNV+ A+AV  + T+
Sbjct: 257 YTVRIPMEHGVDSLNVAAASAVVFWATR 284


>gi|307701543|ref|ZP_07638560.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           FB024-16]
 gi|307613222|gb|EFN92474.1| RNA methyltransferase, TrmH family, group 3 [Mobiluncus mulieris
           FB024-16]
          Length = 354

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 123/327 (37%), Gaps = 66/327 (20%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           +   ++I + K + +   +R+    K         R  ++     ++G + VS A     
Sbjct: 30  QAYRDRIAAEKKATHTNAQRSRAAAK------DHYRPHTRAGAELIFGRNPVSEA-AVAG 82

Query: 66  RKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQ--------- 112
               +L      +         +       P++      +D++  +  VHQ         
Sbjct: 83  VPFKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLT-EGGVHQGIAAELCAY 141

Query: 113 ---------------------------------------GLALET-----APLLSPTLDA 128
                                                  G+  ET     AP  +     
Sbjct: 142 QYLDVMELWDLAVARAEAAGRAASAGCAVVSPAVHEAPSGVLGETPKSDLAPHETVATKP 201

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             +  LL+ LD V DPHN+GA+LRSA AF  DG+I  +  + S +A   K ++GA   +P
Sbjct: 202 PTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVP 261

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247
             + +NLT ALQ +   G   IGL       L      D  + ++ G+EG+G+    ++T
Sbjct: 262 VAQATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDT 321

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  + +   +++LN + A  +ALY
Sbjct: 322 CDQIVSIPIAPRMESLNAAVATGIALY 348


>gi|225159254|ref|ZP_03725555.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224802151|gb|EEG20422.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 289

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 107/292 (36%), Gaps = 32/292 (10%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I SL++    +L +            +  R   +     + G   +  AL    R I 
Sbjct: 5   ERITSLQNPRVKQLVK-----------LRDRRPRDEAGVFLVEGYRQIRRALEKNVR-IN 52

Query: 70  QLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA---------- 115
           +L  + +           D        V  +      K+  +E     LA          
Sbjct: 53  ELYFSSDWFLGENEPALIDQAAAAGAQVIELSKDAFAKVAYRERPDGLLAVAPQWRHSLA 112

Query: 116 -----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
                L+  PL  P  D    +  L+V++ +  P N+G ILRSA A   D +I     + 
Sbjct: 113 DLAARLDAPPLSPPAADRSERAPFLLVVEAIEKPGNLGTILRSADAAGVDALIVCDPVTD 172

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  + ++++G L  +P I   +  +  + +   G +++  +  +            +A
Sbjct: 173 LFNPNVVRASTGVLFSVPVIVAGS-GEVREWLRERGIRSVATTPSATTLHTDSDLRGPLA 231

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +++G+E  GL       A +   + M G   +LNV+ A  + L+      ++
Sbjct: 232 IVMGSEQYGLSDYWLAEADARVRIPMAGQADSLNVAMATIITLFEAVRQRSE 283


>gi|60680796|ref|YP_210940.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
 gi|265762723|ref|ZP_06091291.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60492230|emb|CAH06995.1| putative SpoU-like rRNA methylase [Bacteroides fragilis NCTC 9343]
 gi|263255331|gb|EEZ26677.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162293|emb|CBW21838.1| putative SpoU-like rRNA methylase [Bacteroides fragilis 638R]
          Length = 270

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R  S            +  AL+     +  L   K+ +             P
Sbjct: 20  LTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T     +  + G       L     P L    +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  + +   + +  +L ++   GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSW---TWIDGSLSRLGDLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  D    ++  +     K+A+I+G EG GL  +T   A  +  + M   + +LNV+ AA
Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256

Query: 270 AVALYITQ 277
           +VA +  +
Sbjct: 257 SVAFWELR 264


>gi|197284301|ref|YP_002150173.1| methyltransferase [Proteus mirabilis HI4320]
 gi|227358559|ref|ZP_03842884.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|194681788|emb|CAR41011.1| putative tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
 gi|227161270|gb|EEI46344.1| RNA methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 367

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 97/247 (39%), Gaps = 11/247 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N    I +    +    R          +      V  +
Sbjct: 122 RRQRLEETRIYGENACQAMFKNRPEAIVRAWFLQEVTPRFREALKWMAANRKAYHVVEEE 181

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K    +  H G+       +       L        ++ L+ V +PHN+GAI+RS  
Sbjct: 182 EMVKAARTD-HHGGVCFLIKKRVGHDAQTYLKDAPTKDCVLALEDVGNPHNVGAIMRSCA 240

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G+I+    S  ES    ++A G  E+I  I   N    L++    G+  +  SS 
Sbjct: 241 HFGVKGVISPD-SSVLESGAAVRTAEGGAEYIQGIDADNFAQTLEQFKQAGYTLVTTSSH 299

Query: 216 -SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
               PL +    +K+ LILG E  GL   T +      ++   G I++LNVS A+ V L 
Sbjct: 300 KGSVPLAKAQLPEKMVLILGQEKDGLSDSTLKQGDMSIYIGGTGHIESLNVSVASGVLLA 359

Query: 274 -YITQNH 279
            +  Q+H
Sbjct: 360 EWWRQHH 366


>gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
 gi|169293904|gb|EDS76037.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
          Length = 238

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 117/255 (45%), Gaps = 23/255 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +    QK ++  +     + G H V  A+   ++++  L++TK+         
Sbjct: 6   SNNTIKTLIKLKQK-KYRDETGYYLVEGEHLVEEAMK--AKQVECLISTKD--------- 53

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +    P+  V  + + K+       Q +  +         + + + +  ++LD + DP 
Sbjct: 54  -ITSDLPIVIVSNEVMSKL-SFTKSPQFIMAKCK---IKKENKLIDGKRYLILDDLQDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A+AFS D +I +       +  L +S  GA  HI  I   +L   +  +   
Sbjct: 109 NIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHINCIY-DDLKTVISTLKKN 167

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             + IG + ++ + ++Q   ++K+A I+G EG G+     +    + ++ +   I++LNV
Sbjct: 168 NVKIIGSALENGQDIKQIKISEKMAFIVGNEGNGMNKDILQECDYVGYIPI-NTIESLNV 226

Query: 266 SNAAAVALYITQNHF 280
           + A ++ +Y    HF
Sbjct: 227 AIAGSIMMY----HF 237


>gi|223646822|gb|ACN10169.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
 gi|223672681|gb|ACN12522.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
          Length = 288

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 127/297 (42%), Gaps = 42/297 (14%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+   +K S   F  +DS     +  HR+Y+                   L+GV     A
Sbjct: 1   MSSELRKLSLDDFPEEDSRERLSKEEHRNYET------------------LFGVSPCLLA 42

Query: 61  LNNPSRKIFQLLA-----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           L    R   +L       ++ A  R   +       P++ V    ++K+     VHQGL 
Sbjct: 43  LTQGRRNAHRLFVKEGEASRRASVRQVCEEAHRQGVPIQRVSKNDLNKMCS-GGVHQGLC 101

Query: 116 LETAPLLSPTLDAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           L+ + L   T D             L +VLD V DP N+GAILRSA     D + ++ R 
Sbjct: 102 LQASCLGFLTDDKTSKPPRDSSHIPLWLVLDGVQDPMNLGAILRSAYFLGVDRVASSLRN 161

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL----SSDSKKPLEQEI 224
           S   + V++K++SG +E +      +LTD L+   + G+Q IG     + ++  P+ +  
Sbjct: 162 SCPLTPVVSKASSGVMEVMRVYGYDSLTDMLKVKLAQGWQVIGTVGAEAENAHVPVMKCS 221

Query: 225 K---NDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALY 274
           K        L++G EG+GL  + +     M  +     +   +++LNVS A  + L+
Sbjct: 222 KFQMTKPTLLLMGGEGEGLSRELRLQCEVMLTIIPRRDLHPGVESLNVSVATGILLH 278


>gi|297195412|ref|ZP_06912810.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152773|gb|EDY63126.2| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 283

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 13/265 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPS----RKIFQLLATKNALAR 80
           + R  +   +     R+    + LF+  G   V  A+ +        + +L  T  A  R
Sbjct: 8   SPRSPRVTAARRLAKRNFRGKDRLFIAEGPQAVREAVAHRGPDGEATLVELFTTVEAAER 67

Query: 81  LDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMV 137
                +  H     V       + + V +    QGL      L SP  D +    +L+ V
Sbjct: 68  YADIVDAAHAAGARVHHAADTVLAE-VSQTVTPQGLVGVCRFLDSPFEDILAARPKLVAV 126

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L HV DP N G +LR A A   D +I T       +    +++ G+  H+P      +  
Sbjct: 127 LAHVRDPGNAGTVLRCADAAGADAVILTDASVDLYNPKSVRASVGSHFHLPVAVGVPVEQ 186

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAH 253
           A+Q +   G + +      ++ L+ E+         A I G E  GL  +T+  A ++  
Sbjct: 187 AVQGLRDAGVRVLAADGAGEQDLDDELDAGTMGGPTAWIFGNEAWGLPEETRALADAVVR 246

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + + G  ++LN++ AAAV LY +  
Sbjct: 247 VPIHGKAESLNLATAAAVCLYASAR 271


>gi|297621955|ref|YP_003710092.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297377256|gb|ADI39086.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 272

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 94/259 (36%), Gaps = 7/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++  K +     + R   +     + G   +  A++         + +K  L   +   
Sbjct: 16  QNQKIKDVVRLRDR-RQREKTGKFLIEGYRELLRAVDAGFEIESLFICSKLFLGSHETAL 74

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---QLLMVLDHVN 142
                 PV +       KI  ++       L  AP     L  +         +V + + 
Sbjct: 75  ISRCGDPVYSCAEHVFRKISYRDRPDG--LLAVAPQKRRALKQLPTPDGSPFYVVAEAIE 132

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P N+G ILRS+ A   DG+I   R +   +  + +++ G L  +P +      + L+ +
Sbjct: 133 KPGNLGTILRSSDAAGVDGLIVCDRCTDIYNPNVVRASVGTLFTVPVLEAEG-EETLKWL 191

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  +  ++    +      +A+++G E  GL     E A     + M G+  +
Sbjct: 192 KERSISVLAATPHARSLYTEVEMTGPLAIVVGTEQLGLSELWMEHADIQVRIPMMGVADS 251

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ A  + LY      A
Sbjct: 252 LNVATATTLLLYEAIRQRA 270


>gi|213692458|ref|YP_002323044.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523919|gb|ACJ52666.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458603|dbj|BAJ69224.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 292

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 107/277 (38%), Gaps = 30/277 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WD 84
           Y  +     ++R               +  AL      +  LL  +  L  +       D
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPL-SLLVEEPWLEGMKDTFDFID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV    P+ + ++ G       L      LL    +  R+++ + V++++ D 
Sbjct: 76  GRWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWLLPSVAEVCRSARRVAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D       
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 198 -----ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGL 240
                 + ++ S GF T+ ++ + +     E+              DK+ALI G EG GL
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPDEDPTHIDKLALIFGTEGDGL 255

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 256 SHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|227876792|ref|ZP_03994901.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
 gi|227842689|gb|EEJ52889.1| TrmH family tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
          Length = 354

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 123/327 (37%), Gaps = 66/327 (20%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           +   ++I + K + +   +R+    K         R  ++     ++G + VS A     
Sbjct: 30  QAYRDRIAAEKKATHTNAQRSRAAAK------DHYRPHTRAGAELIFGRNPVSEA-AVAG 82

Query: 66  RKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKIVGKEAVHQ--------- 112
               +L      +         +       P++      +D++  +  VHQ         
Sbjct: 83  VPFKRLFVASTIMKDPKLAKVVERASASGVPLRECSAADLDRLT-EGGVHQGIAAELCAY 141

Query: 113 ---------------------------------------GLALET-----APLLSPTLDA 128
                                                  G+  ET     AP  +     
Sbjct: 142 QYLDVMELWDLAVARAEAAGCAASAGCAVVSPAVHEVPSGVLGETPKSDLAPHETVATKP 201

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             +  LL+ LD V DPHN+GA+LRSA AF  DG+I  +  + S +A   K ++GA   +P
Sbjct: 202 PTHPPLLVALDQVTDPHNLGAVLRSAAAFGADGVIIPEHRAASVNAAAWKVSAGAAAIVP 261

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247
             + +NLT ALQ +   G   IGL       L      D  + ++ G+EG+G+    ++T
Sbjct: 262 VAQATNLTRALQDLKRAGAFVIGLDGGGDVALPDLQLTDVPLVVVTGSEGRGISRLVRDT 321

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
              +  + +   +++LN + A  +ALY
Sbjct: 322 CDQIVSIPIAPRMESLNAAVATGIALY 348


>gi|216264577|ref|ZP_03436569.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           156a]
 gi|223888839|ref|ZP_03623430.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           64b]
 gi|224533577|ref|ZP_03674166.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           CA-11.2a]
 gi|225548612|ref|ZP_03769659.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           94a]
 gi|226320997|ref|ZP_03796542.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           29805]
 gi|215981050|gb|EEC21857.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           156a]
 gi|223885655|gb|EEF56754.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           64b]
 gi|224513250|gb|EEF83612.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           CA-11.2a]
 gi|225370642|gb|EEH00078.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           94a]
 gi|226233598|gb|EEH32334.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           29805]
 gi|312148435|gb|ADQ31094.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           JD1]
          Length = 246

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRG 63

Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+     +  +                + +  +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   
Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|53712583|ref|YP_098575.1| putative rRNA methylase [Bacteroides fragilis YCH46]
 gi|52215448|dbj|BAD48041.1| putative rRNA methylase [Bacteroides fragilis YCH46]
          Length = 270

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R  S            +  AL+     +  L   K+ +             P
Sbjct: 20  LTEAQLRNRIDSDRGIFIAESPKVIQVALDAGYEPLAILCEQKHIIGDAAVIIERCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T     +  + G       L     P L    +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGKRDILALLTGYTLTRGVLCAMRRPELRSVEEVCREAKRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  + +   + +  +L ++   GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSIFLVSW---TWIDGSLSRLGDLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  D    ++  +     K+A+I+G EG GL  +T   A  +  + M   + +LNV+ AA
Sbjct: 197 ALTDDSISIDDPVLKTEPKLAIIMGTEGDGLPYETISEADYVVRIPMSHSVDSLNVAAAA 256

Query: 270 AVALYITQ 277
           +VA +  +
Sbjct: 257 SVAFWELR 264


>gi|323356730|ref|YP_004223126.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323273101|dbj|BAJ73246.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 265

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 112/263 (42%), Gaps = 9/263 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            +    ++++  + S+  ++ E     L G      AL      + +L AT  AL +   
Sbjct: 3   ENPRSPRVRAVAKLSKRAARQETGLFLLEGPQAAREALAWAPETVLELYATPTALEKHTD 62

Query: 83  -WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDH 140
             DA       ++      +D +       QG+        +   D +  S  L+ + + 
Sbjct: 63  VRDAAEKAGVDLQYTTEAVLDAMADT-VTPQGIVAVARQSPTALKDVLAGSPRLIAICEE 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A   D ++ T R     +  + +S +G+L H+P      L   ++
Sbjct: 122 VRDPGNLGTIIRAADAAGADAVVLTGRTVDPYNPKVVRSTTGSLFHLPVAVDLELAHVVE 181

Query: 201 KMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           ++H  G + +    D    L  +++ ++  A + G E +GL       A     L + G 
Sbjct: 182 RVHEAGLRVVAADVDGGDFLASRDLLSEPTAWLFGNEARGLDEAALAHADLSLRLPIFGR 241

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
            ++LN++ AA+V LY T   FA+
Sbjct: 242 AESLNLATAASVCLYETA--FAQ 262


>gi|167750209|ref|ZP_02422336.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
 gi|167656771|gb|EDS00901.1| hypothetical protein EUBSIR_01183 [Eubacterium siraeum DSM 15702]
          Length = 303

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 9/237 (3%)

Query: 46  PENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
              +F+    TV   AL+   + I  L   K    R +         PV T   + +  +
Sbjct: 60  EHGIFIAESQTVIEVALDAGCKPISMLTDRKYINDRANGIIERCGDIPVYTADSKIMSGL 119

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            G E     L     P      +  RN++ + VL+++ D  N GAI+RSA A   D ++ 
Sbjct: 120 TGYELTRGMLCAMERPAPKRAEELCRNARRIAVLENIADVSNTGAIIRSAAALGIDAVLI 179

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGFQTIGLSS-DSKK 218
           T            + + G +  IP+  I       Q      ++S GF+T  ++  D+  
Sbjct: 180 TPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNSLGFKTAAMALTDNSV 239

Query: 219 PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ +      ++A+ILG+EG GL  KT +       + M   + +LNV  AAAVA 
Sbjct: 240 SIDDKTLQSEKRLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAAVAF 296


>gi|119953304|ref|YP_945513.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
 gi|119862075|gb|AAX17843.1| 23S rRNA methyltransferase [Borrelia turicatae 91E135]
          Length = 244

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 113/240 (47%), Gaps = 17/240 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N      +L  +K    +      +   +  + +    + KI+G    H+G 
Sbjct: 7   NSIIESIKNNKG--LELYISK-ISPKSINIEKIAREYNTQIIKVNDLAKIIGNN-NHRGF 62

Query: 115 ALETA-----------PLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+               L   L+    +N+  +++LD + DP N GAILR++  F+ D 
Sbjct: 63  ALKLKISKSNNTNKQDKNLEEFLEKFQYKNNVFILILDGIEDPQNFGAILRTSEQFNIDL 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +IT++R S  ++A   +++SGA +++  + + N+ + ++ +   GF         K    
Sbjct: 123 VITSQRRSAKDNATTLRTSSGASQYVNKLIVPNINNVIKDLKKNGFWIYASDIKGKAINT 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I + KIALI+G EGKG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 183 IKINDTKIALIMGNEGKGIHKLIKENSDFLVKIPTTGKIDSLNVSVSTGILIFEIKRQLN 242


>gi|271501802|ref|YP_003334828.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586]
 gi|270345357|gb|ACZ78122.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586]
          Length = 380

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 95/246 (38%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V  +
Sbjct: 136 RRQRAEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDE 195

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + +  G E  H G+           ++  L     +  ++ L+ V +PHN+G I+RS  
Sbjct: 196 ELARASGTE-HHGGVCFLIKKRRGLDVTAYLREAGETDCVLALEDVGNPHNLGGIMRSCA 254

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I    L DAL +  + G+  +  SS 
Sbjct: 255 HFGVKGVLVNDA-SQLESGAAVRTAEGGAEHVKAISAEGLVDALAQFRAAGYTIVTTSSH 313

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L Q     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 314 KGTTLSQVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 373

Query: 274 YITQNH 279
           +  Q+H
Sbjct: 374 WWRQHH 379


>gi|224534716|ref|ZP_03675288.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
           A14S]
 gi|224513964|gb|EEF84286.1| RNA methyltransferase, TrmH family, group 3 [Borrelia spielmanii
           A14S]
          Length = 246

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 115/241 (47%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKTQNIKILRISINELDKIL-KTKDHRG 63

Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+     +  +                + +  +++LD + DP N+GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNLGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT++ S  +++ + +++SGA +++  I ++N+ + +  +   GF         +   
Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKITVANINNTIIFLKKHGFWIYASDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    ++ +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKQNSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|125527657|gb|EAY75771.1| hypothetical protein OsI_03687 [Oryza sativa Indica Group]
          Length = 517

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/281 (25%), Positives = 119/281 (42%), Gaps = 54/281 (19%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL-----------ARLDWDANLPHPFPVKTVPPQ 99
           +YGV  V AAL    R+ + L   +                ++    L     +K +   
Sbjct: 225 VYGVGPVLAALMAERREFYALYIQEGMDLSVSNKKKKDKKGIEKVLQLAERIGLKVIEAS 284

Query: 100 TID-KIVGKEAVHQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVNDPHNIGAIL 151
             D  +V     HQGL L+ +PL    +  L+ VR     + + + LD V DP N+GAI+
Sbjct: 285 KHDLNMVVDNRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVMDPQNLGAII 344

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI- 210
           RSA  F  +G++   + S   S V++K+++G+LE I  +   N+   L      G++ + 
Sbjct: 345 RSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLG 404

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--------------- 255
           G  +    PL + +  +   L+LG+EG GLRP  + + T +  +                
Sbjct: 405 GTVASKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSFVGADTDTD 464

Query: 256 -------------MPG--IIKALNVSNAAAVALYITQNHFA 281
                        M     +++LNVS AA V LY    H A
Sbjct: 465 GGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLY----HLA 501


>gi|318060548|ref|ZP_07979271.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080422|ref|ZP_07987754.1| rRNA methylase [Streptomyces sp. SA3_actF]
 gi|333028301|ref|ZP_08456365.1| putative rRNA methylase [Streptomyces sp. Tu6071]
 gi|332748153|gb|EGJ78594.1| putative rRNA methylase [Streptomyces sp. Tu6071]
          Length = 273

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 9/256 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R   +       G   V  AL++    +  +L T+  L     D    
Sbjct: 17  DYTSLTDVQLRRRREPEEGLFIAEGEKVVRRALDSGH-GMRSMLLTEKWLP-AMADVIEA 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              PV  V P+T +++ G   VH+G        PL +P  D +  ++ + V + + D  N
Sbjct: 75  SEAPVYLVSPETAERVTGYH-VHRGALASLHRTPLPAPA-DVLAGARRVAVFEDLVDHAN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA  R+A A   D  + T R +        K + GA+  +PY R+ +       +   G
Sbjct: 133 LGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQAG 192

Query: 207 FQTIG-LSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F       SD    L+  +  +  ++AL+ G+EG GL P     A     + M   I +L
Sbjct: 193 FTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDSL 252

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A AV  Y T+ +
Sbjct: 253 NVAAATAVVFYATRKN 268


>gi|302518015|ref|ZP_07270357.1| rRNA methylase [Streptomyces sp. SPB78]
 gi|302426910|gb|EFK98725.1| rRNA methylase [Streptomyces sp. SPB78]
          Length = 273

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 9/256 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R   +       G   V  AL++    +  +L T+  L     D    
Sbjct: 17  DYTSLTDVQLRRRREPEEGLFIAEGEKVVRRALDSGH-GMRSMLLTEKWLP-AMADVIEA 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              PV  V P+T +++ G   VH+G        PL +P  D +  ++ + V + + D  N
Sbjct: 75  SEAPVYLVSPETAERVTGYH-VHRGALASLHRTPLPAPA-DVLAGARRVAVFEDLVDHAN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA  R+A A   D  + T R +        K + GA+  +PY R+ +       +   G
Sbjct: 133 LGAAFRNAAALGVDAALLTPRCADPLYRRAVKVSMGAVFSLPYARLEHWPADADTIKQAG 192

Query: 207 FQTIG-LSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F       SD    L+  +  +  ++AL+ G+EG GL P     A     + M   I +L
Sbjct: 193 FTLAAFCLSDRSLTLDALVAREDPRLALLFGSEGPGLTPAALTAADLHVRIPMQAGIDSL 252

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A AV  Y T+ +
Sbjct: 253 NVAAATAVVFYATRKN 268


>gi|160887319|ref|ZP_02068322.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
 gi|156107730|gb|EDO09475.1| hypothetical protein BACOVA_05337 [Bacteroides ovatus ATCC 8483]
          Length = 280

 Score =  193 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           ALN     +  L   K+               PV T   + +  + G       L     
Sbjct: 47  ALNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRR 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L    +  R ++ ++V++ V D  NIGAI RSA A   D I+ T+      +    + 
Sbjct: 107 RTLPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILGAE 236
           + G++  IP+  +        ++   GF+T+ ++  +    ++  I     K+A+++G E
Sbjct: 167 SMGSVFLIPWTWLDGSP---NELRKQGFRTVAMALTEKSISIDNPILATEPKLAIVMGTE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G GL+ +T   A  +  + M   + +LNV+ A+A+A +  +  
Sbjct: 224 GDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266


>gi|297559549|ref|YP_003678523.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843997|gb|ADH66017.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 272

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 8/256 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY +++  N +    ++       G   +  A      +    L T+     LD D    
Sbjct: 16  DYTRLRDVNLRRHLEAEHGLFMAEGDKVIRRA-AAAGFEPRSFLLTERRAEALD-DVVAA 73

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P+  V   T +K+VG +     LA      L P  D +  ++ ++VL+ + D  N+G
Sbjct: 74  SSAPLYVVGEDTAEKLVGFDLHRGALAAFHRRALPPLDDVLAGARTIVVLEDLVDHTNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA     D I+   R +        K + GA+  +P+ R+ +    L  + + GF 
Sbjct: 134 AIFRSAAGLGVDAIVLAPRCADPLYRRAVKVSMGAVFTLPHTRLDDWYGGLDTLRAAGFH 193

Query: 209 TIGLSS-DSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKA 262
            + L+  +   PL   +      D++ L+LG EG GL  +  E AT+  H+ M    + +
Sbjct: 194 LMALTPGEGSLPLRDAMAALAPGDRVGLLLGTEGDGLSSRWLERATARVHIPMADRDVDS 253

Query: 263 LNVSNAAAVALYITQN 278
           LNV+ AAA+A Y    
Sbjct: 254 LNVTAAAAIACYELTR 269


>gi|291539916|emb|CBL13027.1| rRNA methylases [Roseburia intestinalis XB6B4]
          Length = 289

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 96/280 (34%), Gaps = 31/280 (11%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---------- 75
           +++  K +    +K++  ++       G      A   P   + Q+  ++          
Sbjct: 6   SNQQMKNLTLLMKKAKARNEQGVFVAEGRKMFLEA---PVEWVKQVCVSESFYETCMQGN 62

Query: 76  --------------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                           L R   +      + +  V      K V      QG+       
Sbjct: 63  MQDCMKSCTPKHGEEKLNRKVLERLNETGYEI--VSDNVF-KSVSDTQTPQGILCVIKKP 119

Query: 122 LSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                  ++  Q  L++L+ + DP N+G ++R+       G+I  +      +    +S 
Sbjct: 120 EYALEKLIKGEQTHLLILESIQDPGNLGTMVRTGEGAGITGVIMNQTTVDLFNPKTIRST 179

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++  +P+    +L   +  +                  ++     K A ++G EG GL
Sbjct: 180 MGSIYRVPFFITKDLAGTISSLKEQQVNVYAAHLKGTLSYDEPDYKKKTAFLIGNEGNGL 239

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  + A +   + M G +++LN + +A++ +Y T    
Sbjct: 240 SDEIADLADTYIKIPMQGQVESLNAAISASLLMYETGRQR 279


>gi|254823193|ref|ZP_05228194.1| hypothetical protein MintA_24909 [Mycobacterium intracellulare ATCC
           13950]
          Length = 281

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 6/252 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D    
Sbjct: 21  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFHP-HALLGTDRRLTELKDDLA-G 78

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + ++VG       LA           + +  ++ + VL+ VND  N+G
Sbjct: 79  STVPFYRTSADIMARVVGFHLNRGVLAAARRVGEPSVAEVIAGARTVAVLEGVNDHENLG 138

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A     D ++     +        + + G    +PY R +     L  +   GF+
Sbjct: 139 SIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARATCWPAELMTLKENGFR 198

Query: 209 TIGLSSDSKK-PLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++      PL + +   + +++A+++GAEG GL P T   +     + M     +LN
Sbjct: 199 LLAMTPHESACPLAEAMTAARGERVAVLVGAEGPGLTPATLRCSDVRVRVPMSRGTDSLN 258

Query: 265 VSNAAAVALYIT 276
           V+ AAA+A Y  
Sbjct: 259 VATAAALAFYER 270


>gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
 gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
          Length = 243

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 105/249 (42%), Gaps = 16/249 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+     +K ++  + +   + G H +  A    +  +  +L            A+
Sbjct: 8   NAKVKQWAKLKEK-KYREKDQRFLVEGEHLIEEA--ARAGLVEAVLVEIGK-------AH 57

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               +PV  V    + K+    +    +A+   P            + ++VLD V DP N
Sbjct: 58  TFVEYPVYEVTKDILRKLESSVSGTWIMAVCRMPQYHDA----EFGKRVIVLDDVQDPGN 113

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R+AV+F  D ++ +       +  + +S  GAL HIP IR  ++   L  +   G
Sbjct: 114 VGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIPVIR-GDVQAMLMSLKQKG 172

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            + +  S  +   L +    D  AL+ G EGKG+  +    A +   + M    ++LNV+
Sbjct: 173 NRILATSLHNASALREIAVPDAFALVFGNEGKGVSEEVLRLADTHVFIEM-HTFESLNVA 231

Query: 267 NAAAVALYI 275
            AA + +Y 
Sbjct: 232 VAAGICMYA 240


>gi|317124678|ref|YP_004098790.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315588766|gb|ADU48063.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 267

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 105/259 (40%), Gaps = 12/259 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLP 88
           K +++ +++S   S+       G   V  A+     ++  +  T     R     DA L 
Sbjct: 11  KSVRALSRRS-VRSRTGQFLAEGPQAVREAVRCAPEQVRDIYVTAEGADRHPEIVDAALA 69

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNSQLLMVLDHVNDPH 145
               V    P+ + ++   E   QG+        P LS  L A+    ++ VL +V DP 
Sbjct: 70  AHLFVHEASPEVLHEMCDAE-HPQGIVAVCRWAEPTLSAALGALPRDAVVCVLTNVRDPG 128

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++R A A   D ++ +       S  + +S  G+L H+P +    +   L  + + 
Sbjct: 129 NAGTVIRGADAAGADLVVVSDSSVDVSSPKVVRSTVGSLWHLPIVTGVPVPVILDALRAR 188

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + +         L +       A ++G E  GL  + ++    +  + + G  ++LN+
Sbjct: 189 GVRLLAADGSGSTLLPEADLTGPHAWVMGNEAWGLDAEVRDACDEVVRVPIHGRAESLNL 248

Query: 266 SNAAAVALYIT-----QNH 279
           + AA + LY +     Q H
Sbjct: 249 AMAAMLCLYASAESRVQRH 267


>gi|195941652|ref|ZP_03087034.1| rRNA methylase [Borrelia burgdorferi 80a]
 gi|312149360|gb|ADQ29431.1| RNA methyltransferase, TrmH family [Borrelia burgdorferi N40]
          Length = 246

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKTKEIEQLAKTQNIKIIRINANELDKIL-KNKDHRG 63

Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+     +  +                + +  +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   
Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|126435572|ref|YP_001071263.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126235372|gb|ABN98772.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 248

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 96/238 (40%), Gaps = 5/238 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AAL      + ++ AT++A AR    A L     V  V  +   
Sbjct: 13  RRRAARFLAEGPNLVEAALRRG--VVSEVFATEDAAARF---AALLVGADVHLVTERAAK 67

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P +S       + +L+ V    ++P N G ++R A A   D +
Sbjct: 68  ALSDTVTPVGLVAVCRMPEVSLDEILGASPRLVAVAVETSEPGNAGTLIRLADAMGADAV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I         +    ++++G++  +  +   +    +  +H  G   +  + D +  L+ 
Sbjct: 128 ILAGNSVDPYNGKCLRASAGSIFGVSVVEAPDTAGLVAALHGAGLTVLATTLDGEVSLDD 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   A + GAE  GL P+    A +   + M G  ++LNV+ AAA+ LY +    
Sbjct: 188 AELSGPTAWLFGAEAHGLAPEVAALADARVTIPMAGSAESLNVAAAAAICLYQSARAL 245


>gi|218249262|ref|YP_002375025.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           ZS7]
 gi|226321825|ref|ZP_03797351.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           Bol26]
 gi|218164450|gb|ACK74511.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           ZS7]
 gi|226233014|gb|EEH31767.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           Bol26]
          Length = 246

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRG 63

Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+     +  +                + +  +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   
Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQNIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|134296013|ref|YP_001119748.1| tRNA/rRNA methyltransferase SpoU [Burkholderia vietnamiensis G4]
 gi|134139170|gb|ABO54913.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia vietnamiensis G4]
          Length = 260

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 104/261 (39%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    +    +  +  L G H   A L+  +     + AT+ ALA
Sbjct: 2   KSITSRDNPLYKRLKALAGSTAQQRRGGHALLEGFHLAGAYLDTGAIPELCV-ATEGALA 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       GL L       P    V ++   +VL
Sbjct: 61  HAEAQAIVARIDAPRVVTLPDALFGQLSNVVSGVGLLLLVERPAQPLPARVTDTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVEPDAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +++           S   + +     +  +A + G EG G+    ++ AT    +  PG
Sbjct: 179 AERL---DVPVALTDSHGAQAVYDCDLSGPVAWVFGNEGAGVSAFWRDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|329898069|ref|ZP_08272279.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
 gi|328920968|gb|EGG28392.1| von Willebrand factor, type A [gamma proteobacterium IMCC3088]
          Length = 256

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 9/249 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLP--HPFPVK 94
           +++  +    L +YG + V A L +     K+  L  +     +LD    L       V+
Sbjct: 8   QTKKQALRRWLTVYGRNPVEACLQDAQLRPKVLHLADSNQKSDKLDRLIALAEKRGCDVR 67

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNIGA 149
                 + +I   +   QG+AL+        L     S       L++LD V +P N+G 
Sbjct: 68  FHDRDALARISKNKKQDQGVALDVECQAFNDLSVFLQSTSEETCRLILLDRVTNPQNLGM 127

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILRS  A    G+I  +R       ++AK+++G L H P +R ++ ++AL  +   GF  
Sbjct: 128 ILRSTTAAGITGVIVPERGCAPLGPLVAKASAGTLFHAPVLRCTSSSEALDALLGLGFTC 187

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             LSS ++    +E    K   +LG E +G+ P       +   + M   +++LNV+  A
Sbjct: 188 YTLSSHTESNFFEEHIPAKAVFVLGNESEGVAPDIASRCQAKVRIPMHNGVESLNVAITA 247

Query: 270 AVALYITQN 278
           A+  Y    
Sbjct: 248 ALIAYYLDR 256


>gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228]
          Length = 246

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 109/267 (40%), Gaps = 24/267 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++S   K++  ++  KK        R   +     + G+H +  A  +    I 
Sbjct: 2   EQITSAQNS---KIKNANKLKKK--------RERDKTGLALVEGIHLIEEAYQSQIEVIQ 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             +   + ++    D        V  +  +  + + G     QG          PT D  
Sbjct: 51  LFIVDTDRMSSSIIDYAKE----VYQINLKVAEALSGT-VTPQGFFAIIK---KPTYDKT 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              Q+L++ D + DP N+G ++R+A A   D I+  K  +      + +++ G++ HIP 
Sbjct: 103 LAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I      D    +H +     G + ++             ALILG EG+G+ P   +  T
Sbjct: 162 I----FDDINNYIHQFNGPVYGTALENAVSFNDIEAQANFALILGNEGEGVNPDLLKETT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
               + + G  ++LNV+ A ++ +Y  
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244


>gi|254252073|ref|ZP_04945391.1| rRNA methylases [Burkholderia dolosa AUO158]
 gi|124894682|gb|EAY68562.1| rRNA methylases [Burkholderia dolosa AUO158]
          Length = 260

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 9/261 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL   + 
Sbjct: 6   SRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAAPELCV-ATEGALQHAEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L       P  + V ++   +VLD V 
Sbjct: 65  QAIVARVDAQRVVTLPDALFGQLSNVVNGVGFLLLVDRPAQPLPERVAHTS--VVLDGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +         D L   
Sbjct: 123 DAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDV-APDVLA-- 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + +     +  +A + G EG G+    ++ AT    +  PG +++
Sbjct: 180 GRLDVPIALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYI--TQNHFA 281
           LNV+ AAAV L+    Q   A
Sbjct: 240 LNVAAAAAVCLFEQVRQQRRA 260


>gi|261343573|ref|ZP_05971218.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282568722|gb|EFB74257.1| putative tRNA/rRNA methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 368

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 116/286 (40%), Gaps = 26/286 (9%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           ISK+ SE+   L++ H     ++  D ++++          + E   +YG +   A   N
Sbjct: 94  ISKQDSEE---LENDHGGISGKSQIDPEQLRK--------QRQEETRIYGENACQAMFKN 142

Query: 64  PSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
               I +       T      L W A     + V  V  + ++K  G E  H G+     
Sbjct: 143 RPDGIVRAWFLQSVTPRFRDALKWMAANRKAYHV--VDAEELEKASGTE-HHGGVCFIIK 199

Query: 120 PL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                     L    ++  ++ L+ V +PHN+G I+RS   F   G+I        ES  
Sbjct: 200 KRGGMQAEAYLQEAADTDCVLALEDVGNPHNLGGIMRSCAHFGIQGVILQDAG-MLESGA 258

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILG 234
             ++A G  EH+  I     T  L+K    G+  +  SS    + + +     K+ L+LG
Sbjct: 259 AIRTAEGGAEHVKAIDADGFTPTLEKFRQAGYTIVTTSSHKGSQDIAKVQLPKKMVLVLG 318

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
            E  GL   T +      ++   G +++LNVS A  + L  + +QN
Sbjct: 319 QESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVATGIMLSQWWSQN 364


>gi|78189687|ref|YP_380025.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
           CaD3]
 gi|78171886|gb|ABB28982.1| RNA methyltransferase TrmH, group 3 [Chlorobium chlorochromatii
           CaD3]
          Length = 248

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 9/241 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVK--TVPPQTIDKI 104
           N  +YG + V   L +    I ++    N    +L           +       + + +I
Sbjct: 7   NNIVYGRNAVLELLQHKPESIEKIYFQFNTSHPKLKEIVITARRLKLVSGKARLEKLSEI 66

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            G    HQG+    + +   +L+ V      ++ LL+VL  ++DPHN+GAI+R+A A + 
Sbjct: 67  AGTTK-HQGVCALISSVTYYSLEEVLAQPRNSAPLLVVLQGLDDPHNLGAIIRTAEAVAA 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  +      +A + K+A+GAL H+   ++ +L   L+ +H    Q      D+++ 
Sbjct: 126 DAVVVVEGKGSPINAAVHKAAAGALSHLRVCKVKSLVRTLEFLHQQKVQVFAADMDAERN 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     AL+LG EG GL P+  +   ++  L M G +++LNVS  A V LY     
Sbjct: 186 YTDVDMRQPTALVLGMEGSGLAPEAMQFCDTVVRLPMAGCVESLNVSVTAGVLLYEAMRQ 245

Query: 280 F 280
            
Sbjct: 246 R 246


>gi|311278485|ref|YP_003940716.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
 gi|308747680|gb|ADO47432.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter cloacae SCF1]
          Length = 352

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 108 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 167

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ V +PHN+GA++RS  
Sbjct: 168 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQADADDCVLALEDVGNPHNLGAMMRSCA 226

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ +A+++  S G+  +  SS 
Sbjct: 227 HFGVKGVLLQDA-ALLESGAAIRTAEGGAEHVQPITGDSVLEAIEQFRSAGYTIVTTSSH 285

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL +     K+ L+LG E  GL      +A     ++  G +++LNVS A  V L  
Sbjct: 286 EGTPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSINGTGNVESLNVSVATGVLLAE 345

Query: 274 YITQN 278
           +  QN
Sbjct: 346 WWRQN 350


>gi|293372222|ref|ZP_06618608.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|298482640|ref|ZP_07000824.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|292632798|gb|EFF51390.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|298271103|gb|EFI12680.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
          Length = 280

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           ALN     +  L   K+               PV T   + +  + G       L     
Sbjct: 47  ALNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRR 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L    +  R ++ ++V++ V D  NIGAI RSA A   D I+ T+      +    + 
Sbjct: 107 RALPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILGAE 236
           + G++  IP+  +        ++   GF+T+ ++  +    ++  I     K+A+++G E
Sbjct: 167 SMGSVFLIPWTWLDGSP---NELRKQGFRTVAMALTEKSISIDNPILATEPKLAIVMGTE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G GL+ +T   A  +  + M   + +LNV+ A+A+A +  +  
Sbjct: 224 GDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266


>gi|302541293|ref|ZP_07293635.1| putative 23S rRNA methyltransferase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458911|gb|EFL22004.1| putative 23S rRNA methyltransferase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 299

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 117/275 (42%), Gaps = 23/275 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           ++ SL+       RR  +     +SF  K R         + G   V  A+ +    + +
Sbjct: 27  ELTSLRSPRVTAARRLAK-----RSFRGKERR------FLVEGPQAVREAIAH----LVE 71

Query: 71  LLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           + AT  A AR     +A      PV T     I ++       QG+      L SP  + 
Sbjct: 72  VYATPEAAARHTGIVEAARASRIPVLTASDDVIAEMSDT-VTPQGIVGLCRFLDSPFEEI 130

Query: 129 VR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +R   +L+ VL +V DP N G +LR A A   D ++ T       +    +++ G+L H+
Sbjct: 131 LRARPRLVAVLANVRDPGNAGTVLRCADAAGADAVVFTDASVDPYNPKAVRASVGSLFHL 190

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPK 243
           P      + +A+  + + G + +      ++ L++E+ +       A I G E  GL   
Sbjct: 191 PVATGVPVEEAVDGLRTAGARVLAADGAGERDLDEELDDGVLGAPTAWIFGNEAWGLPEA 250

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+  A  +  + + G  ++LN++ AAAV LY +  
Sbjct: 251 TRALADEVVRVPIHGRAESLNLATAAAVCLYASAR 285


>gi|295094660|emb|CBK83751.1| rRNA methylases [Coprococcus sp. ART55/1]
          Length = 285

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 18/242 (7%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            +  AL+     +  LL  ++   +           P+ T P   + K+ G       L 
Sbjct: 43  VIERALDAGYEPVSILLEDRHVEGQCADIIKRCGDIPIYTAPFDVLTKLTGFALTRGMLC 102

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 L        ++  + VL+ V +P N+GAI RSA A   D ++ T   S      
Sbjct: 103 AMRRAELPSVESVCEHAARIAVLEEVMNPTNVGAIFRSAAALGMDAVLLTPGCSDPLYRR 162

Query: 176 LAKSASGALEHIPYIRIS---------------NLTDALQKMHSWGFQTIGLSS--DSKK 218
            A+ + G +  IP+  I+                    + ++HS GF+T  ++   D+  
Sbjct: 163 AARVSMGTVFQIPWTYITFDTLGLAHNKADHGIWPEFGMGQLHSMGFRTASMALRNDTID 222

Query: 219 PLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             + E+K  D++A+ILG EG+GL+ +T +++     + M   + +LNV+ A+AVA +   
Sbjct: 223 IHDPELKQIDRLAVILGTEGEGLKTETIDSSDYTVKIPMYHGVDSLNVAAASAVAFWELG 282

Query: 278 NH 279
             
Sbjct: 283 RR 284


>gi|329961963|ref|ZP_08299974.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328530611|gb|EGF57469.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 282

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 8/251 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HPF 91
           +     ++R               +  ALN     +  LL   N +     D        
Sbjct: 20  LTEAQLRNRLEPSRGIFIAESPKVIKVALNAGYEPL-ALLCEHNHITGDAADIIKSCGDI 78

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV T   + +  + G       L      +L    +  R ++ ++V+D V D  NIGAI 
Sbjct: 79  PVYTGSRKLLATLTGYVLTRGVLCAMRRRMLPSVEEVCREARRIVVIDGVVDTTNIGAIF 138

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++ T+      +    + + G++  +P+   + L  +L  ++ +GF+T  
Sbjct: 139 RSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLLPW---TWLDGSLSGLNKYGFRTAA 195

Query: 212 LS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           ++ SD    ++  +     K+A+++G EG GL  +T   A  +  + M   + +LNV+ A
Sbjct: 196 MALSDHSISIDDPVLTAEPKLAIVMGTEGDGLPHETITEADYVVRIPMSHGVDSLNVAAA 255

Query: 269 AAVALYITQNH 279
           +AVA +  +  
Sbjct: 256 SAVAFWQLRAQ 266


>gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 264

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 97/250 (38%), Gaps = 4/250 (1%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++  K      QKS    Q     + G   +  AL +P   + Q+       +    
Sbjct: 6   SKDNKKIKYAARLKQKS-FRKQEACFLIEGKKMLEEALKHPKL-LRQIFIEAELASEYTE 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                  +    V  + +  I   E    G+            + +  +  L+ LD + D
Sbjct: 64  LYQQHPEWECYVVDKRLMKHISDTETPP-GIVALCQIPSWSREEFLSQNAFLLYLDRIAD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+RS  A   DGI+ +       S  + +++ G + +IP + +    D L+++ 
Sbjct: 123 PGNLGTIIRSGWALGVDGILLSPESVDPFSPKVVRASMGGIFNIPLL-LDFSVDELKRLK 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              +     S  +++ +          L +G+E +G+RP  +E       + +   + +L
Sbjct: 182 QNAYTFFCASLQARQEIFSLDFTGPSLLAIGSESQGVRPVIEEICDFNCKIPIKPGVDSL 241

Query: 264 NVSNAAAVAL 273
           N + A A+ +
Sbjct: 242 NAAVACAIII 251


>gi|268590433|ref|ZP_06124654.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291314348|gb|EFE54801.1| putative tRNA/rRNA methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 364

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 113/287 (39%), Gaps = 26/287 (9%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +SK  SE++    + H   + ++  D ++++          + E   +YG +   A   N
Sbjct: 91  VSKPDSEELT---NDHGGIVGKSQIDPEQLRK--------QRQEETRIYGENACQAMFKN 139

Query: 64  PSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
               I +       T      L W A     + V  V  + + K  G E  H G+     
Sbjct: 140 RPDAIVRAWFLQSVTPRFRDALKWMAANRKAYHV--VDDEELSKASGTE-HHGGVCFIIK 196

Query: 120 PL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                     L     +  ++ L+ V +PHN+G I+RS   F   G+I        ES  
Sbjct: 197 KRGGMSADAYLQQAAGNDCVLALEDVGNPHNLGGIMRSCAHFGIKGVILQDAG-MLESGA 255

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILG 234
             ++A G  EHI  I    LTD L K    G+  +  SS    + L +     K+ L+LG
Sbjct: 256 AIRTAEGGAEHIKAIDADGLTDTLDKFRKAGYTIVTTSSHKGSQDLAKAKLPAKMVLVLG 315

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
            E  GL   T +      ++   G +++LNVS A  + L  +  QN 
Sbjct: 316 QESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVATGIMLAQWWQQNQ 362


>gi|186701914|ref|ZP_02971563.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
 gi|186700651|gb|EDU18933.1| RNA methyltransferase, TrmH family, group 3 [Ureaplasma parvum
           serovar 6 str. ATCC 27818]
          Length = 239

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 12/230 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   +  A+ N        L +KN       +    +    + V      +       H
Sbjct: 5   FGKKALLDAIGNKQSISKVYLLSKNYE---LINLINKNKITYEIVNEAWFKQ-FDHSLNH 60

Query: 112 QGLA--LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           Q +A  L        +L++       + + L+++LD + DP N GAI+R+A  F  D II
Sbjct: 61  QNIAFKLVKKNFQKTSLESFLKLIKDKKNALVLILDEIEDPRNFGAIIRTANGFGVDAII 120

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             K +  S + ++ K++ GA+ +I  I ++NL++ ++ +   GF     S    +  E+ 
Sbjct: 121 YKKHHQASINDLVIKTSMGAINYIYMIEVNNLSNTIKNLQDEGFWVYATSLLKSQSYEKV 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +K   I+G E KG+ P   + A     + M G +++LNV  A  + L
Sbjct: 181 DYANKTVFIVGNENKGVSPLILKNADQSIRIDMFGDVQSLNVGVATGIIL 230


>gi|218670695|ref|ZP_03520366.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli GR56]
          Length = 209

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 101/195 (51%), Positives = 135/195 (69%), Gaps = 13/195 (6%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQ----SFNQKSRHTSQ--------PENLFLYGVHTVSAAL 61
           S KD+HYA LRR HRD K+ +    +   + R  ++        P+ ++LYG+HTV AAL
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPQPQKRKRAEDWKPPALAPDQVYLYGLHTVRAAL 75

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           +NP RK  +L  T+NALARL+ D         + V P  IDK++G EA+HQG+ LET PL
Sbjct: 76  DNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEIDKVLGPEAIHQGVMLETRPL 134

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
               L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +ITT+R+SP+ES VLAKSAS
Sbjct: 135 PVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSAS 194

Query: 182 GALEHIPYIRISNLT 196
           GALE IPYI+I+NL 
Sbjct: 195 GALELIPYIQITNLA 209


>gi|254708588|ref|ZP_05170416.1| tRNA/rRNA methyltransferase (SpoU) [Brucella pinnipedialis
           M163/99/10]
 gi|261316094|ref|ZP_05955291.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261305120|gb|EEY08617.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
          Length = 265

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 120/276 (43%), Gaps = 18/276 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116
           L  ++   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
              ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           G EG+GL  +  E     A + M     +LNV+ A+
Sbjct: 231 GTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATAS 265


>gi|221218099|ref|ZP_03589565.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           72a]
 gi|221192047|gb|EEE18268.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           72a]
          Length = 246

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKIQNIKIIRINTNELDKIL-KNKDHRG 63

Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+     +  +                + +  +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   
Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|45657881|ref|YP_001967.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601122|gb|AAS70604.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 220

 Score =  192 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 19/219 (8%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
            NP  +I + +  K           +P    V  V    +D +V     HQG+    AP 
Sbjct: 5   ENPGTEIVEKILNK-----------IPSFVQVHKVSVSKLDSLV-PGRNHQGIVALKAPS 52

Query: 122 LSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
              T D               ++LD + DP N+G ILR+A  F    II  +R S   + 
Sbjct: 53  KQTTFDKKNLEEFLSEKPGAFLILDRIQDPGNLGNILRTAECFGVTNIILPERESAGITP 112

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           V+ K ASGAL  +    + NL + L+ +   G+  +  S    +   +    +++ +++G
Sbjct: 113 VVEKVASGALSFLKIFTVKNLANTLELLKENGYWIVSTSDRGTEDWSKLPDLNELVILMG 172

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            EG+G++    E +  +  + M G + +LNV+ A  + L
Sbjct: 173 NEGEGIKRILMEKSDFVLRIPMYGNLSSLNVTVATGIVL 211


>gi|229488371|ref|ZP_04382237.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
 gi|229323875|gb|EEN89630.1| rRNA methyltransferase [Rhodococcus erythropolis SK121]
          Length = 268

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++         +   GV      L +    I  LL  +  L  L  D +  
Sbjct: 17  DFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSRFEPI-SLLGVERRLLELADDLD-G 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + ++VG       LA    P      D +++++ ++VL+ VND  N+G
Sbjct: 75  VDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVSDVLKDAKTVVVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D ++  K  +        + + G +  +P+  ++     L ++   GFQ
Sbjct: 135 SMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAKWPHDLDELRGNGFQ 194

Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ +     L + +  +K+AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 195 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVAT 254

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 255 AAAMAFYERVR 265


>gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
 gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
          Length = 255

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 10/257 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K+++   +  R   +     L GVH V  A       +  L+  ++A A  + 
Sbjct: 6   SRDNAFFKQLKRLAESGRERRKTGQTLLDGVHLV-EAYEKAFGPLENLIVAESAAAGGEI 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVN 142
            A L     V  V    + + +G      GL      P  +  +D  +++   ++LD V 
Sbjct: 65  AAYLEGRQAV--VLADALMRDLGLVDTPSGLLAVAPMPQRTALVDLGKDA---VLLDGVQ 119

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+A A     ++     + + S  + ++  GA   +     ++L   +   
Sbjct: 120 DPGNVGTLLRTAAASGVKQVLMAPGCASAWSPKVLRAGQGAHFVLAIHEEADLAAFMADY 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 T     D    L +      +A I GAEG G+R +  ETA     + MPG +++
Sbjct: 180 RG---TTAVTCLDGATSLYEARWTGPLAWIFGAEGLGVRRELIETAKLRIKIPMPGAVES 236

Query: 263 LNVSNAAAVALYITQNH 279
           LNV  AAAV L+     
Sbjct: 237 LNVGAAAAVCLFEALRR 253


>gi|50954374|ref|YP_061662.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950856|gb|AAT88557.1| rRNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 277

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 113/272 (41%), Gaps = 11/272 (4%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKN 76
            YA +  ++    ++++  + ++ T++ E     L G   V+ AL   S  + +L AT  
Sbjct: 5   RYAGVMLDNPRSPRVRAVAKLTKRTARSETGLFLLEGPQAVAEALAFRSELLVELYATPT 64

Query: 77  ALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ- 133
           AL R    A         V+ V  Q +  I       QG         +   +    S  
Sbjct: 65  ALERHQDIAQAAAAAGTQVEFVTEQVLGTIADT-VTPQGFVAVARQFPTSVREIFAGSPA 123

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+ +L+ V DP N G I+R+A +   D ++ T R     +  + +S +G+L HIP    +
Sbjct: 124 LVAILEEVRDPGNAGTIIRAADSAGADAVVLTGRTVDLYNPKVVRSTTGSLFHIPVAVGA 183

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATS 250
           +L + +    + G + +      +  L            A + G E +GL  +       
Sbjct: 184 DLPEVVSCARAAGLRVLAADIAGEDLLAARTAGQLARPTAWVFGNEARGLPDEWLGLVDR 243

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              + + G  +++N++ AA+V LY +   FA+
Sbjct: 244 AVAVPIYGRAESMNLATAASVCLYESA--FAQ 273


>gi|332710004|ref|ZP_08429960.1| rRNA methylase [Lyngbya majuscula 3L]
 gi|332351375|gb|EGJ30959.1| rRNA methylase [Lyngbya majuscula 3L]
          Length = 259

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 111/272 (40%), Gaps = 18/272 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           + S K+    ++R+ HR            +   Q +   L G H ++ A       +   
Sbjct: 2   LTSTKNPLVKEIRKLHR-----------VKGRRQQDLFLLEGTHLLAEACAVDYPLVTLC 50

Query: 72  LATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDA 128
             ++   A  +L  DA++     V+ V    +  I         +A     PL    L++
Sbjct: 51  YTSEWLEAHPQLSQDASVRSQ-RVEVVSQSVLKAIATTVEPDGVVATATRLPLSPKPLNS 109

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L + L+ + DP N+G I+R+AVA   +G+  +      ++  + +++ G    +P
Sbjct: 110 L---SLGLALETIQDPGNLGTIIRTAVAAGAEGLWLSSDSVELDNPKVLRASVGQWFRLP 166

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +L   + +  + G Q +    D+K             ++LG E  GLR    +TA
Sbjct: 167 MAVTPHLPTLVAQAQAQGIQVVATVPDAKVSYWDIDWRCPSLILLGNEAAGLREDLVKTA 226

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ +   +++LNV+ AAA+ LY  +   
Sbjct: 227 DQQVNIPLMPGVESLNVAIAAALMLYEAKRQR 258


>gi|225549662|ref|ZP_03770628.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           118a]
 gi|225369939|gb|EEG99386.1| RNA methyltransferase, TrmH family, group 3 [Borrelia burgdorferi
           118a]
          Length = 246

 Score =  192 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 116/241 (48%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKTKEIEKLAKIQNIKIIRINANELDKIL-KNKDHRG 63

Query: 114 LALETAPLLSPTLDA-------------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+     +  +                + +  +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNVKTQTKDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +ITT++ S  +++ + +++SGA +++  + ++N+ + +  + ++GF         +   
Sbjct: 124 LVITTQKRSAKDNSTVLRTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|237713180|ref|ZP_04543661.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409427|ref|ZP_06085969.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647368|ref|ZP_06724961.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294809011|ref|ZP_06767733.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446838|gb|EEO52629.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352639|gb|EEZ01737.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637327|gb|EFF55752.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294443736|gb|EFG12481.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
          Length = 267

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R  S            ++ ALN     +  L   K+               P
Sbjct: 20  LTEAQLRNRIESDKGLFIAESPKVINVALNAGYEPLALLCEQKHITGDAADIIERYDDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + + ++ G       L     P      +  + ++ + V++ V D  NIGAI R
Sbjct: 80  VYTGARELLARLTGYILTRGVLCAMHRPTPKSVEEICKGARRIAVIEGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D I+ T+      +    + + G++  IP+  +        ++H  GF+T+ +
Sbjct: 140 SAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIPWAWLDGSP---NELHKLGFRTVAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  +    ++  I     K+A+++G EG GLR +T   A  +  + M   + +LNV+ A+
Sbjct: 197 ALTEKSISIDSPILATEPKLAIVMGTEGDGLRNETITEADYVVRIPMANGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           A+A +  +
Sbjct: 257 AIAFWQLR 264


>gi|319957584|ref|YP_004168847.1| RNA methyltransferase, trmh family, group 3 [Nitratifractor
           salsuginis DSM 16511]
 gi|319419988|gb|ADV47098.1| RNA methyltransferase, TrmH family, group 3 [Nitratifractor
           salsuginis DSM 16511]
          Length = 233

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   V  AL     ++ ++   K  +  L  D    +   +  +  +   ++  + 
Sbjct: 6   MIIYGKQVVLHALRRHPEQVHKIYIAKKGV--LPQDLFEKYGDKITFIENRWAQQL-SRG 62

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQGL  E       +L  V+    ++VLD + D  NIGAI+RSA A   DGI+ T   
Sbjct: 63  GNHQGLLAEIEDYRPASLAEVKEGDFVLVLDTLTDAGNIGAIVRSAYALGVDGIVATGIG 122

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             + SA + +++SGAL  +P+    N+ D L ++   G +  G S + + P+E+++ + K
Sbjct: 123 QLNFSA-VTRTSSGALLEMPFALHRNILDVLHELKQAGHRLYGASMEGE-PIEEKLFDRK 180

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             L+LG+E +G+  K +E       + M     +LNVS AAA+ ++
Sbjct: 181 RTLVLGSEERGISKKARERLDETVAIRMKRPFDSLNVSAAAAIMIH 226


>gi|330719322|ref|ZP_08313922.1| rRNA methylase [Leuconostoc fallax KCTC 3537]
          Length = 257

 Score =  192 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 113/275 (41%), Gaps = 25/275 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I   ++ ++ +       K R+ +R Y                    L G H V  A
Sbjct: 1   MDRILSNQNPRVKAWAKLATKKGRQENRTY-------------------LLDGWHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +   + K   ++AT+  +A  +   ++PH  P   +  +    I G  +  QG+  E + 
Sbjct: 42  IKVKA-KFHAVMATETQMA--EHLPDVPHGVPAFEISEEVAKHIAGTNS-PQGIFAEISL 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                     +    ++LD++ DP N+G ++R+A A    G++     + + S  + ++ 
Sbjct: 98  PEKTFDPKYVHDGAWLLLDNIQDPGNVGTLVRTADAAGFKGVVLGAGTADAYSPKVVRAM 157

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKG 239
            G+  H+  +   +L +    + S      G L ++  K         +  LI+G EG G
Sbjct: 158 QGSQFHLEVLN-GDLDEWTDALISNDLPVYGSLLNEEAKSYHDVQPATQFGLIVGNEGNG 216

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +     +  T+  ++ + G  ++LNV+ A  + ++
Sbjct: 217 MSAALADKTTANLYIPIQGRAESLNVAIAGGILMF 251


>gi|288927311|ref|ZP_06421158.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330145|gb|EFC68729.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 267

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +  AL+     +  +   ++ +       +     P
Sbjct: 20  LTETQLRNRLQPDKGVFIAESPKVIRVALDAGYEPLSMMCEERHIVGDAADIISRCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T     + ++ G       L            +A  ++  + V+D V D  NIGAI R
Sbjct: 80  VYTGERALLAQLTGYTLTRGVLCAMRRKPTRSVAEACADATRVCVIDGVTDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++  K      +    + + G++  +P+         L ++ + GF+T  +
Sbjct: 140 SAAALGIDAVVLAKNACDPLNRRAVRVSMGSVFLVPWTWSEQP---LAELSALGFRTAAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +   +   L+        ++A+++G EG GL  +    A  +  + M   + +LNV+ A+
Sbjct: 197 ALTHNSISLDDAKLKAEPRLAIVMGTEGDGLPHQVIAQADYVVRIPMAHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           AVA +  +
Sbjct: 257 AVAFWELR 264


>gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 287

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 109/283 (38%), Gaps = 18/283 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +    K ++I SL          ++   K +++ +QK ++ ++       G+  V  A
Sbjct: 6   MCMPKTGKVKEITSL----------SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDA 54

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLAL 116
           L N   KI  L+ +K+ ++    +    H       V     + ++ I  ++     + +
Sbjct: 55  L-NLGWKIQTLIFSKSKISNTAIENTAAHTVANGGLVIKASQKVMESIARRDNPQTVIGI 113

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                 S  +   +   + + LD V DP N+G I+R+A A    G+I     +   S   
Sbjct: 114 FKQQWQSLEMITGQAEDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPET 173

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGA 235
            ++  G++  +P  R           H  G   +G              KN  + L++G 
Sbjct: 174 VRATMGSIFSVPLYRFDESAFLNWSTHFKGM-IVGTHLKGSIDYRTIDFKNGPVILLMGN 232

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E +GL          +A +   G   +LN++ A A+ LY  + 
Sbjct: 233 EKQGLPDILANCCDKLARIPQSGRADSLNLAVATAIMLYEIRR 275


>gi|203287959|ref|YP_002222974.1| rRNA methylase [Borrelia recurrentis A1]
 gi|201085179|gb|ACH94753.1| rRNA methylase [Borrelia recurrentis A1]
          Length = 244

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 116/240 (48%), Gaps = 17/240 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N      +L  +K +   +  +  L     +K +    + KI+G    H+G 
Sbjct: 7   NSIIESIKNNKG--LELYISKTSPKAISIE-QLARQHNIKIIKINDLTKILGNN-NHRGF 62

Query: 115 ALETAPL-----------LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+   L           L   L     +N+ L+++LD + DP N GAILR+A  F+ D 
Sbjct: 63  ALKLQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDL 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +IT +R S  ++A + +++SGA +++  + + N+ + ++ +   GF         +    
Sbjct: 123 VITNQRKSVKDNATVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAINN 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I ++KIALI+G EGKG+    +  +  +  +   G I +LNVS +  + ++  +    
Sbjct: 183 TKITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242


>gi|203284425|ref|YP_002222165.1| rRNA methylase [Borrelia duttonii Ly]
 gi|201083868|gb|ACH93459.1| rRNA methylase [Borrelia duttonii Ly]
          Length = 244

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 115/240 (47%), Gaps = 17/240 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           +++  ++ N      +L  +K +   +  +  L     +K +    + KI+G    H+G 
Sbjct: 7   NSIIESIKNNKG--LELYISKTSPKTISIE-QLARQHNIKIIKINDLTKILGNN-NHRGF 62

Query: 115 ALETAPL-----------LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           AL+   L           L   L     +N+ L+++LD + DP N GAILR+A  F+ D 
Sbjct: 63  ALKLQNLKDYNTINKNKNLEEYLKEFQHKNNILILILDSIEDPQNFGAILRTAEQFNIDL 122

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +IT +R S  ++  + +++SGA +++  + + N+ + ++ +   GF         +    
Sbjct: 123 VITNQRKSVKDNETVLRTSSGASQYVNKLTVPNINNVIRYLKKQGFWIYASDIKGQAINN 182

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +I ++KIALI+G EGKG+    +  +  +  +   G I +LNVS +  + ++  +    
Sbjct: 183 TKITDNKIALIMGNEGKGIHNLLKNNSDFLIKIPTKGKIDSLNVSVSTGILIFEIKRQLN 242


>gi|14970548|emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi]
          Length = 366

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 122 RRQRSEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDD 181

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + +  G E  H G+           ++  L    ++  ++ L+ V +PHN+G I+RS  
Sbjct: 182 ELVRASGTE-HHGGVCFLIKKRHGLDVAAYLSEAGDTDCVLALEDVGNPHNLGGIMRSCA 240

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I    L DAL +  + G+  +  SS 
Sbjct: 241 HFGVKGLLVNDA-AQLESGAAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSH 299

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 300 KGTTLSKVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 359

Query: 274 YITQNH 279
           +  QNH
Sbjct: 360 WWRQNH 365


>gi|189459984|ref|ZP_03008769.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
 gi|189433287|gb|EDV02272.1| hypothetical protein BACCOP_00618 [Bacteroides coprocola DSM 17136]
          Length = 296

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 97/251 (38%), Gaps = 6/251 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R   +           +  AL+   + +  L   K+               P
Sbjct: 49  LTEAQLRNRIDPEKGIFIAESPKVIRVALDAGYQPLALLCEKKHIEGDAADIILRAGDIP 108

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P      +  R+++ + V+  V D  NIGAI R
Sbjct: 109 VYTGSRELLASLTGYTLTRGVLCAMRRPAPRTPEEVCRDARRVAVIHGVVDTTNIGAIFR 168

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D I+ +       +    + + G++  +P+   + L   +  +   GF T  L
Sbjct: 169 SAAALGIDAILLSPDSCDPLNRRAVRVSMGSVFLVPW---TWLPRPVSSLREMGFCTASL 225

Query: 213 SS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  D   P++     +  ++A+++G E  GL  +    +  +  + M   + +LNV+ A+
Sbjct: 226 ALTDRSVPIDYPELKEIPRLAIVMGTEDDGLPAEVLSESDYVVRIPMWHGVDSLNVAAAS 285

Query: 270 AVALYITQNHF 280
           AVA +  +   
Sbjct: 286 AVAFWELRARR 296


>gi|307132323|ref|YP_003884339.1| putative methyltransferase [Dickeya dadantii 3937]
 gi|306529852|gb|ADM99782.1| predicted methyltransferase [Dickeya dadantii 3937]
          Length = 362

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 118 RRQRSEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVEDD 177

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + +  G E  H G+           ++  L    ++  ++ L+ V +PHN+G I+RS  
Sbjct: 178 ELVRASGTE-HHGGVCFLIKKRHGLDVAAYLSEAGDTDCVLALEDVGNPHNLGGIMRSCA 236

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I    L DAL +  + G+  +  SS 
Sbjct: 237 HFGVKGLLVNDA-AQLESGAAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSH 295

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 296 KGTTLSKVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 355

Query: 274 YITQNH 279
           +  QNH
Sbjct: 356 WWRQNH 361


>gi|226308108|ref|YP_002768068.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226187225|dbj|BAH35329.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 281

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 3/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++         +   GV      L +  + I  LL  +  L  L  D +  
Sbjct: 30  DFRDLNSSDRRPDLPEGKGLVIAEGVFVTQRLLTSRFQPI-SLLGVERRLLELADDLD-G 87

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + ++VG       LA    P      D +++++ ++VL+ VND  N+G
Sbjct: 88  VDVPFYRTSAEVMAEVVGFHLNRGVLAAAARPAPLAVSDVLKDAKTVVVLEGVNDHENLG 147

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D ++  K  +        + + G +  +P+  ++     L ++   GFQ
Sbjct: 148 SMFRNAAGLGVDAVLFGKGCADPLYRRSVRVSMGHVLRVPFAHVAKWPHDLDELRGNGFQ 207

Query: 209 TIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I L+ +     L + +  +K+AL+LGAEG GL           A + M     +LNV+ 
Sbjct: 208 LISLTPNPEAVTLAEAMTGEKVALLLGAEGPGLTEHAMRATDIRAKIPMAPGTDSLNVAT 267

Query: 268 AAAVALYITQN 278
           AAA+A Y    
Sbjct: 268 AAAMAFYERVR 278


>gi|293394750|ref|ZP_06639041.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422701|gb|EFE95939.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 362

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 118 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDEE 177

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L +      ++ L+ V +PHN+GAI+RS  
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAQTYLQSAPAKDCVLALEEVGNPHNLGAIVRSCA 236

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS 
Sbjct: 237 HFGVNGVLLQDP-ALLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSH 295

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L Q     K+ L+LG E  GL     +       +   G +++LNVS A  + L  
Sbjct: 296 KGTTLAQAKLPAKMVLVLGQERDGLSDSAWQQGDMSISIGGTGKVESLNVSVATGILLAD 355

Query: 274 YITQNH 279
           +  QN 
Sbjct: 356 WWRQNQ 361


>gi|291440681|ref|ZP_06580071.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291343576|gb|EFE70532.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 299

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 12/262 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKI---FQLLATKNALARLDW 83
           R  + + +     R+    E LFL  G   V  A  +    +    +L  T  A  R   
Sbjct: 25  RSPRVLAARRLAKRNFRGKERLFLAEGPQAVREAAAHREGPVPTLVELFTTPEAAERYAD 84

Query: 84  DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDH 140
                      V     Q I  I       QGL      L +P    +    +L+ VL H
Sbjct: 85  IVGGARGAGARVHLASEQVIADI-STTVTPQGLVGVCRFLDTPFEQILAARPRLVAVLAH 143

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR A A   + ++ T       +    +++ G+L H+P      +  A+ 
Sbjct: 144 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAIGVPVEQAVA 203

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +   G + +       + L+ E+         A + G E  GL  +T+    ++  + +
Sbjct: 204 GLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEETRALTDAVVRVPI 263

Query: 257 PGIIKALNVSNAAAVALYITQN 278
            G  ++LN++ AAAV LY +  
Sbjct: 264 HGKAESLNLATAAAVCLYASAR 285


>gi|239622037|ref|ZP_04665068.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515228|gb|EEQ55095.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516989|emb|CBK70605.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
          Length = 292

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 30/277 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WD 84
           Y  +     ++R               +  AL      +  LL  +  L  +       D
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPL-SLLVEEPWLEGMKDTFDFID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV    P+ + ++ G       L       L    +  R+++ + V++++ D 
Sbjct: 76  GRWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCRSARRVAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D       
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 198 -----ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGL 240
                 + ++ S GF T+ ++ + +     E+              DK+ALI G EG GL
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGL 255

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 256 SHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
 gi|257196892|gb|EEU95176.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
          Length = 259

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 96/259 (37%), Gaps = 8/259 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
               R +   K                     G           +  +  L  T+ AL +
Sbjct: 3   KITSRENAKIKYACRLASSGAFRRSEGKFLAEGRKLCPELCRGAA--LETLFCTEAALEK 60

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               A LP       V     DK+      HQG+          TLD  +     + L+ 
Sbjct: 61  CPELAGLPGEH--YLVEDHVADKLAD-VGTHQGV-FGIFRTPVHTLDEAKTGGRYLALER 116

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G +LRSA AF  DG++ +   +   +    +++ GA   +P + +  +  A+ 
Sbjct: 117 VQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASMGAAVRVPVMEVGAMPAAIA 176

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            + +     +  +    +PL          + +++G+EG+GL  +T    +    + M  
Sbjct: 177 ALRAKNITCLAAALYQSQPLSAARPGYPGGVCVVIGSEGQGLTEETIAACSGTVRIPMTD 236

Query: 259 IIKALNVSNAAAVALYITQ 277
            +++LN   A ++ L+  +
Sbjct: 237 RVESLNAGIAGSILLWHFR 255


>gi|239832469|ref|ZP_04680798.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239824736|gb|EEQ96304.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 279

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 14/265 (5%)

Query: 26  NHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARLD 82
           +  D  ++  +   + +     +  F+     V   L  ++   +   LL  +N LA L 
Sbjct: 19  DDPDDIRLSPYRSIREKDLVGRQQRFIAEGKVVLNVLFSSSARFETESLLVLENRLAGLG 78

Query: 83  WDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMV 137
                LP   PV +VP   +D + G   VH+G+         P L   L A+    L++V
Sbjct: 79  EQLGQLPPDVPVYSVPQAVMDAVAGFH-VHRGILAVGRRKPQPGLEAMLGALPAKSLVVV 137

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  +++  N+G+I R+A AF  D ++  +           + + GA   +PY    N+ +
Sbjct: 138 LCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGATLKVPYFHGGNIDE 197

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +  +    F  + LS  S   +    K D+ AL+LG EG+GL P+        A + M 
Sbjct: 198 IIAALGDANFNLLALSPSSTLSIYDAAKQDRHALLLGTEGEGLPPRLLGKL-QTARIPMS 256

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
               +LNV+ A+ +AL    + F+K
Sbjct: 257 TAFDSLNVATASGIAL----SRFSK 277


>gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 240

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 105/253 (41%), Gaps = 18/253 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++    QK ++  + +   + G H +  A       I Q++ T +     +   
Sbjct: 6   QNETIKEIVKLKQK-KYRDEKKMFLIEGFHLIEEA--RKKHSILQIITTLSDDFEEETL- 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     V    ++K+       Q +           +  V + Q  ++LD V DP 
Sbjct: 62  ---------HVSQNVMNKLA-FTRSPQPIMAICRQNNHSLI--VEDGQRYLLLDRVQDPG 109

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A+AF  D +I ++      +  + ++  GAL  +    + NL DA+  +   
Sbjct: 110 NVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQGALFQMNVC-VMNLKDAIVFLKHQ 168

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G    G        +E     DK+A ++G EG+G+  +  E      ++ +   +++LNV
Sbjct: 169 GVDVYGTCLRDASSIETYQVKDKMAFVMGNEGQGVCDEILELCQHRLYIPIQ-TVESLNV 227

Query: 266 SNAAAVALYITQN 278
             A+A+ +Y  Q 
Sbjct: 228 GIASAITMYHFQK 240


>gi|57899959|dbj|BAD87895.1| putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group]
          Length = 517

 Score =  192 bits (488), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 138/350 (39%), Gaps = 79/350 (22%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNH-----------------RDYKKMQSFNQKSRHTSQPEN 48
              + K   +KD +   + R+                  R + + +++ +K+      E+
Sbjct: 157 SIDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKT-WKEAGES 215

Query: 49  LF-------LYGVHTVSAALNNPSRKIFQLLATKNAL-----------ARLDWDANLPHP 90
                    +YGV  V AAL    R  + L   +                ++    L   
Sbjct: 216 TVPKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGIEKVLQLAER 275

Query: 91  FPVKTVPPQTID-KIVGKEAVHQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVN 142
             +K +     D  +V     HQGL L+ +PL    +  L+ VR     + + + LD V 
Sbjct: 276 IGLKVIEASKHDLNMVVDNRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVM 335

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RSA  F  +G++   + S   S V++K+++G+LE I  +   N+   L   
Sbjct: 336 DPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSS 395

Query: 203 HSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH------ 255
              G++ + G  +    PL + +  +   L+LG+EG GLRP  + + T +  +       
Sbjct: 396 AENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGS 455

Query: 256 ----------------------MPG--IIKALNVSNAAAVALYITQNHFA 281
                                 M     +++LNVS AA V LY    H A
Sbjct: 456 FVGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLY----HLA 501


>gi|29833339|ref|NP_827973.1| rRNA methylase [Streptomyces avermitilis MA-4680]
 gi|29610462|dbj|BAC74508.1| putative rRNA methylase [Streptomyces avermitilis MA-4680]
          Length = 272

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 7/241 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  +     + +           G   +  A +        LL+ K      D    L
Sbjct: 16  RDYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKDAGYEMRSMLLSAKWVDVMRDVIDEL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHN 146
           P   PV  V P+  +++ G   VH+G          PT D +   ++ +++++ VND  N
Sbjct: 76  P--APVYAVSPELAEQVTGYH-VHRGALASMQRKPLPTADELLATARRVVIMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   G
Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPKGLESVREAG 192

Query: 207 FQTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F  + L+ D K K L++   +  D++AL+LGAEG GL  +    A     + M   + +L
Sbjct: 193 FNLLALTPDEKAKTLDETAPHKMDRVALMLGAEGDGLSTQALVAADEWVRIPMAHGVDSL 252

Query: 264 N 264
           N
Sbjct: 253 N 253


>gi|332686708|ref|YP_004456482.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
 gi|332370717|dbj|BAK21673.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
          Length = 261

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 101/248 (40%), Gaps = 8/248 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++++K+Q    + ++    +   + G H V  A+N        LL +K  +   +W  + 
Sbjct: 13  KEWRKLQ----QKKYRQDQKKYIVEGFHLVEEAINTNQSIESILLTSKGKMEWEEWLLD- 67

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                +  V  + +   + K    QG+    A      +  +      ++LD++ DP N+
Sbjct: 68  KDFSQIIIVSEEVM-HYLSKLPTPQGILAIIAMQEEREIKDIMVDGGWLLLDNIQDPGNV 126

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A    G+I  +  +   S    +S  G+  H+  +  ++L   L +      
Sbjct: 127 GTMIRTADAAGLAGVILGEGTADIYSTKTLRSMQGSNYHLSIL-HASLPAVLSQFQEKEI 185

Query: 208 QTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              G   +       Q        L++G EG+G+          + H+ M G  ++LNV+
Sbjct: 186 PVFGTEVTQRSVAYTQVKVPHTYGLMVGNEGQGINQSLLTQVDQVIHIPMKGASESLNVA 245

Query: 267 NAAAVALY 274
            AA + ++
Sbjct: 246 VAAGILIF 253


>gi|319901467|ref|YP_004161195.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319416498|gb|ADV43609.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 267

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 103/248 (41%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R  S            +  AL+     +  L    +      +        P
Sbjct: 20  LTEAQLRNRLESDKGIFIAESPKVIKVALDTGYEPLALLCEQNHITGDAAYIIGRCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T     +  + G       L     P      +  ++++ +++++ V D  NIGAI R
Sbjct: 80  VYTGSRDLLTTLTGYILTRGVLCAMRRPKPQNIKEVCQDARRIVIINGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T       +    + + G++  +P+  I N   +L  +   GF+T+ +
Sbjct: 140 SAAALGIDAVLLTHNSCDPLNRRAVRVSMGSVFLVPWTWIDN---SLSDLCGLGFRTVAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  ++  P++  I +   K+A+I+G EG GL  +    A  +  + M   + +LNV+ A+
Sbjct: 197 ALTENSIPIDNPILSSEPKLAIIMGTEGDGLPYEAITEADYVVRIPMSHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           A+A +  +
Sbjct: 257 AIAFWQLR 264


>gi|257791998|ref|YP_003182604.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|257475895|gb|ACV56215.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
          Length = 279

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 110/278 (39%), Gaps = 16/278 (5%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
            I  L+D    +L      Y  M     +    S            +  AL    R +  
Sbjct: 2   PIIHLEDLDDPRL----AAYSGMTDAQLRDCPDSANGLFIGESRKVIERALAAGVR-MRS 56

Query: 71  LLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           L   +  L +    +D   +    FPV     +    + G E     LA    P L    
Sbjct: 57  LFMEEKWLDQTMPLVDSLLDGDPDFPVLVATREQFRALTGYEVTRGALAAFERPPLPRVE 116

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D + +++ + VL+ V +  NIGA+ RSA A   D ++ T           A+ + G +  
Sbjct: 117 DLLASARRVAVLEDVTNYTNIGAVFRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQ 176

Query: 187 IPYIRISN----LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKG 239
           +P+ RI +      + +  + S GF T  L+ SD    L  E     DK+AL+LG EG G
Sbjct: 177 VPWTRIGSERAWAAEGVPLLRSLGFATAALALSDEAIYLHDERLRACDKLALVLGTEGDG 236

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L P T         + M   + +LNV+ A+AVA +  +
Sbjct: 237 LAPSTIANCDYTVKIPMDHEVDSLNVAAASAVAFWELR 274


>gi|311894893|dbj|BAJ27301.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 267

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 8/241 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  AL    R    LL  K      D      
Sbjct: 17  DYTDLTDVELRRRREPAEGLFIAEGEKVIRRALAAGFRMRSMLLTAKWLGVMADVIEG-- 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              PV  V P   +++ G   VH+G     E  PL     + +  ++ + VL+ + D  N
Sbjct: 75  TDAPVHLVDPVLAERVTGYH-VHRGALASMERKPLPGAP-EVLAGARRVAVLEGLVDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RSA A   D ++ +   +        K++ GA+  +PY R+    DAL  +   G
Sbjct: 133 LGAIFRSAAALGMDAVLLSPDCADPLYRRAVKTSMGAVFSVPYARLDPWPDALGAVRDAG 192

Query: 207 FQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           F+ + L+    +       +   K AL+LGAEG GL PK    A     + M   I +LN
Sbjct: 193 FELLALTPSGAEDFTAARPHLLPKAALMLGAEGDGLTPKALAAADQRVRIPMAHGIDSLN 252

Query: 265 V 265
           V
Sbjct: 253 V 253


>gi|294056009|ref|YP_003549667.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615342|gb|ADE55497.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 269

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 96/262 (36%), Gaps = 8/262 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K +    ++ +H  + E   + G+  +  A+ +   +I  +            
Sbjct: 8   SKQNEQVKNLVKLRER-KHRDRQERFLVEGLRELEHAIGSG-FEIETIYFCPELFPSAAH 65

Query: 84  DANLPH-----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
            A +         P+  +  +   K   +E     + +      S     +    LL+VL
Sbjct: 66  QATIDQLRRDGEVPLTRMSEEAFSKAAYREGPDGIVGIGKQQAHSLHELHLPKQPLLLVL 125

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + +  P N+GAILRSA     D II T       +    +S+ G +  +P +  ++    
Sbjct: 126 EGIEKPGNLGAILRSADGAGADAIILTDCILDLYNPNAIRSSQGLIFALPIVN-ADREAL 184

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
              +    +QT+  +  + +   +       AL  G+E  GL             + M G
Sbjct: 185 ADWLQKGRYQTVAATPHTDQSHWEIDYTKPTALFFGSESDGLSDYWMNHLDQRICIPMKG 244

Query: 259 IIKALNVSNAAAVALYITQNHF 280
              +LNV+ AAAV LY  +   
Sbjct: 245 RADSLNVAAAAAVCLYEARRQR 266


>gi|295698469|ref|YP_003603124.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
           pediculicola USDA]
 gi|291157499|gb|ADD79944.1| RNA methyltransferase, TrmH family, group 3 [Candidatus Riesia
           pediculicola USDA]
          Length = 259

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 12/241 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---PFPVKTVPPQTIDKIVG 106
            +YG+HTV++ LN+ +     +   KN+     +            ++ V  + +D +  
Sbjct: 5   IIYGIHTVNSYLNDKNVVFELVYILKNSRNNRIFQIKKKLESFGVSIRLVNRRFLDHLSN 64

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+              + N        L ++LD + D  N+G+ LR+A  F  D
Sbjct: 65  Y-ISHQGILAVINCFQKKASMNILNKIPFQKKILFLILDGITDVRNLGSCLRTAHFFGVD 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I +K  S   + ++ K + GA  ++P IR +NL + ++K+  +  Q +G    + + +
Sbjct: 124 AVIVSKNRSARINEIVEKVSCGASRYVPMIR-TNLVNCIEKLKKYDVQVLGTDEKANRSI 182

Query: 221 EQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              EI   KIA+I+G E KG+R   ++  + +  +       +LNVS  A + L+     
Sbjct: 183 YDLEINEKKIAIIVGNEEKGIRQIIKKNCSRLFRIPTKKQTSSLNVSVTAGIFLFEVCRQ 242

Query: 280 F 280
            
Sbjct: 243 R 243


>gi|153007507|ref|YP_001368722.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151559395|gb|ABS12893.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 294

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 93/257 (36%), Gaps = 8/257 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      ++     
Sbjct: 30  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKMVEQVA 88

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVN 142
                    V  V  + +  I  ++   Q +         P  +   +N+ + + LD V 
Sbjct: 89  ARTFAKGGLVLEVTEKIMAAITRRD-NPQMVVGVFEQQYRPLANLKPKNNDVYIALDRVR 147

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R+A A    GII     +   S    ++  G++  +P  +++   D L   
Sbjct: 148 DPGNLGTVIRTADAVGAKGIILIGDTTDPYSLETVRATMGSVFSMPLYKVTE-ADFLNWR 206

Query: 203 HSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                  +G               N  + L++G E +GL     +T   +A +   G   
Sbjct: 207 KDISGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSLADTCDKLARIPQAGRAD 266

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++ A  V LY  + 
Sbjct: 267 SLNLAIATGVMLYEIRR 283


>gi|125571975|gb|EAZ13490.1| hypothetical protein OsJ_03406 [Oryza sativa Japonica Group]
          Length = 427

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 138/350 (39%), Gaps = 79/350 (22%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNH-----------------RDYKKMQSFNQKSRHTSQPEN 48
              + K   +KD +   + R+                  R + + +++ +K+      E+
Sbjct: 67  SIDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKT-WKEAGES 125

Query: 49  LF-------LYGVHTVSAALNNPSRKIFQLLATKNAL-----------ARLDWDANLPHP 90
                    +YGV  V AAL    R  + L   +                ++    L   
Sbjct: 126 TVPKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGIEKVLQLAER 185

Query: 91  FPVKTVPPQTID-KIVGKEAVHQGLALETAPLL---SPTLDAVR----NSQLLMVLDHVN 142
             +K +     D  +V     HQGL L+ +PL    +  L+ VR     + + + LD V 
Sbjct: 186 IGLKVIEASKHDLNMVVDNRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWIALDEVM 245

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GAI+RSA  F  +G++   + S   S V++K+++G+LE I  +   N+   L   
Sbjct: 246 DPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSS 305

Query: 203 HSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH------ 255
              G++ + G  +    PL + +  +   L+LG+EG GLRP  + + T +  +       
Sbjct: 306 AENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGS 365

Query: 256 ----------------------MPG--IIKALNVSNAAAVALYITQNHFA 281
                                 M     +++LNVS AA V LY    H A
Sbjct: 366 FVGADTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLY----HLA 411


>gi|288934040|ref|YP_003438099.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
 gi|288888769|gb|ADC57087.1| tRNA/rRNA methyltransferase (SpoU) [Klebsiella variicola At-22]
          Length = 361

 Score =  191 bits (487), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           ++  +        ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEEDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++        ES    ++A G  EH+  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVVQDAG-VLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
           +  PL +     K+ L+LG E  GL      ++     +   G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAIDGTGNVESLNVSVATGVLLAE 354

Query: 274 YITQN 278
           +  QN
Sbjct: 355 WWRQN 359


>gi|290508236|ref|ZP_06547607.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
 gi|289777630|gb|EFD85627.1| TrmH family RNA methyltransferase [Klebsiella sp. 1_1_55]
          Length = 361

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           ++  +        ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEEDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++        ES    ++A G  EH+  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVVQDAG-VLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
           +  PL +     K+ L+LG E  GL      ++     +   G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAIDGTGNVESLNVSVATGVLLAE 354

Query: 274 YITQN 278
           +  QN
Sbjct: 355 WWRQN 359


>gi|310287371|ref|YP_003938629.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
 gi|309251307|gb|ADO53055.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
          Length = 292

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 37/299 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+      I S+ D   A        Y  +     ++R   +           +  A
Sbjct: 1   MQFIT------IDSIDDERVAA-------YTNLTEIQLRNRLEPERGLFIAESPKVIDRA 47

Query: 61  LNNPSRKIFQLLATKNALARLDW-----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           L      I  LL  +  +  +       D       PV    P+ + ++ G       L+
Sbjct: 48  LAAGREPI-SLLVEEPWIEGMSQTFDVVDKRWGTDIPVYVASPEQLRQLTGYRLHRGALS 106

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 L    +  R+++ + V++++ D  N+GA++RSA A   D ++ T          
Sbjct: 107 AMRRWPLPSVEETCRDARRVAVMENIVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRR 166

Query: 176 LAKSASGALEHIPYIRIS------NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-- 226
            A+ + G +  IP+ RI            L+++ S GF T+ ++ SD    L++  +   
Sbjct: 167 AARVSMGTVFQIPWTRIGGDDKHFWPRRGLEELRSLGFTTVAMALSDDSISLDELTRRLN 226

Query: 227 ---------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                     K+ALI G EG GL   T   A     + M   + +LNV+ ++AVA Y T
Sbjct: 227 NSPESADHIGKLALIFGTEGDGLSRHTIAGADLTVKIPMSHGVDSLNVAASSAVAFYAT 285


>gi|149196456|ref|ZP_01873511.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
 gi|149140717|gb|EDM29115.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
          Length = 265

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 98/261 (37%), Gaps = 6/261 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIF--QLLATKNALARL 81
           ++   K +    ++ R+  + + + + G  ++  A +N    ++++  +          L
Sbjct: 7   SNPRIKHIVKLRER-RYRDKEQTMIIEGFRSIYRAADNGVYPKELYICRDFFLGKNEDEL 65

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      +         KI  ++     LAL            + +  LL+V   +
Sbjct: 66  IQKLQDEGGTQIFETEQNVFKKISYRDRPEGLLALTGYFRKQVDDLELSDPPLLVVAQSI 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P N+G I+RSA     DG+I   + +   +  +  +++G    +P    ++  D +  
Sbjct: 126 EKPGNLGTIIRSADGTGADGLILCDKCTDLFNPNVITASTGMCFSLPIAEAAS-QDTINY 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +       +  +  + K          IA+I+GAE  GL  +  + ++    + M G   
Sbjct: 185 LKENNITILSATPHADKLYTDVDMTGPIAVIVGAEQYGLSEEWMKQSSINVKIPMLGKAD 244

Query: 262 ALNVSNAAAVALYITQNHFAK 282
           +LNV+ A  + LY       +
Sbjct: 245 SLNVATATTLLLYEAVRQRQQ 265


>gi|256832412|ref|YP_003161139.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685943|gb|ACV08836.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 282

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 111/289 (38%), Gaps = 30/289 (10%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I S  D           +Y  +     +SR   +           +S A+        
Sbjct: 3   EPITSTTDPRLE-------EYTNLTDMRLRSRFEPERGVYIAESATVISRAITAGHAPRS 55

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L++ K            P+  P     P  ++++ G   VH+G          P+LD  
Sbjct: 56  FLMSPKWVEQMTPLMDQFPN-IPAYVGAPGLLEELTGFN-VHRGALASMHRPALPSLDDF 113

Query: 130 RNS------------------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                                  + VLD + D  N+GAI+RS  A   DGII     +  
Sbjct: 114 MTRITRTHQPNALGIDGQSARSRIAVLDGIIDHTNLGAIIRSCAALGVDGIIVNHTSADP 173

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DK 228
                 + + G +  +P+ R +NL + L  +H   + T  L+ SD+   L+Q      DK
Sbjct: 174 LYRRAIRVSMGTVFQVPWTRANNLIEVLDLLHEAHYTTAALALSDNAITLDQFNAENHDK 233

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G EG GL  +T  T + +  + M G + +LNV+  +A+  Y T+
Sbjct: 234 VAFLFGNEGHGLSDRTLATVSRVVTIPMAGDVDSLNVAATSALVFYATR 282


>gi|289450456|ref|YP_003475578.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185003|gb|ADC91428.1| RNA methyltransferase, TrmH family [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 267

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 107/264 (40%), Gaps = 17/264 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82
            + +  YK+   + +        +   L G+     A+    + +I ++     AL    
Sbjct: 8   SKTNPSYKRWLKYCEHP--EKNRDIYLLEGLRLCRDAVEAGEKWRIREVCFNDAALRHET 65

Query: 83  WDA------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
             A      N      V         K+    +  QG+ +  +P          N + ++
Sbjct: 66  GHAFYQLCVNRFGASTVNVFADNLFAKLADTVSS-QGIMMAVSPEGERP---TANWRRVL 121

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L+ V DP N+G+I RSA AF  D +I     +   +    +SA G++ H+P +  S+  
Sbjct: 122 LLERVQDPGNLGSIWRSADAFGFDAVILAAGGASPNNRKTLRSAMGSVFHVPVLPFSDTE 181

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAH 253
            A   +    F     + D + PL +  +     KIAL +G EG GL    ++ A +  +
Sbjct: 182 AAYTFLKQENFWIAAATLDGR-PLAEIARRHDLPKIALAIGNEGNGLSSYARKEADATVY 240

Query: 254 LHMPGIIKALNVSNAAAVALYITQ 277
           + + G  ++LN + AA +  Y  +
Sbjct: 241 IPISGKAESLNAACAAGILCYEFR 264


>gi|52081372|ref|YP_080163.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580]
 gi|52786747|ref|YP_092576.1| YsgA [Bacillus licheniformis ATCC 14580]
 gi|319647279|ref|ZP_08001501.1| YsgA protein [Bacillus sp. BT1B_CT2]
 gi|52004583|gb|AAU24525.1| putative RNA methylase YsgA [Bacillus licheniformis ATCC 14580]
 gi|52349249|gb|AAU41883.1| YsgA [Bacillus licheniformis ATCC 14580]
 gi|317390626|gb|EFV71431.1| YsgA protein [Bacillus sp. BT1B_CT2]
          Length = 248

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 98/264 (37%), Gaps = 30/264 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K++K+   K  H  K R                   ++     + G H V  A
Sbjct: 1   MKRIESAKNQKVKDWKKLHAKKER-------------------TKTNTFLIEGEHLVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L  P   + +++    A      D ++        +       I   E   Q +A     
Sbjct: 42  LKTPG-VVKEIMVADEADFPAMIDESVAR----YVLSADAFSAIAETE-TPQAVAAVCRM 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             S      +    L++ D V DP N+G I+R+A A   D ++  +      +A   +SA
Sbjct: 96  PESGPFQYEK----LLLADAVQDPGNLGTIIRTADAAGIDAVVIGQGTVDPYNAKTLRSA 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G+  HIP ++   L++ ++++        G +     P  +   +   AL++G EG G+
Sbjct: 152 QGSHFHIPILK-RELSELIEELKGKSVPVYGTALQGAVPFREAEPSQSFALLIGNEGSGV 210

Query: 241 RPKTQETATSMAHLHMPGIIKALN 264
            P          ++ + G  ++LN
Sbjct: 211 DPALLAQTDQNLYVPIYGKAESLN 234


>gi|23335009|ref|ZP_00120247.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|23465439|ref|NP_696042.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|189439462|ref|YP_001954543.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|312132870|ref|YP_004000209.1| spou1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482198|ref|ZP_07941220.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322690946|ref|YP_004220516.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|23326090|gb|AAN24678.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
           NCC2705]
 gi|189427897|gb|ACD98045.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|311773840|gb|ADQ03328.1| SpoU1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916336|gb|EFV37736.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455802|dbj|BAJ66424.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 292

 Score =  191 bits (487), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 30/277 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WD 84
           Y  +     ++R               +  AL      +  LL  +  L  +       D
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPL-SLLVEEPWLEGMKDTFDFID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV    P+ + ++ G       L       L    +  ++++ + V++++ D 
Sbjct: 76  GRWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKSARRVAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D       
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 198 -----ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGL 240
                 + ++ S GF T+ ++ + +     E+              DK+ALI G EG GL
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGL 255

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 256 SHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|224282928|ref|ZP_03646250.1| tRNA/rRNA methyltransferase [Bifidobacterium bifidum NCIMB 41171]
 gi|311064212|ref|YP_003970937.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
           PRL2010]
 gi|313140087|ref|ZP_07802280.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
 gi|310866531|gb|ADP35900.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum
           PRL2010]
 gi|313132597|gb|EFR50214.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 292

 Score =  191 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 116/299 (38%), Gaps = 37/299 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+      I S+ D   A        Y  +     ++R   +           +  A
Sbjct: 1   MQFIT------IDSIDDERVAA-------YTNLTEIQLRNRLEPERGLFIAESPKVIDRA 47

Query: 61  LNNPSRKIFQLLATKNALARLDW-----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           L      I  LL  +  +  +       D       PV    P+ + ++ G       L+
Sbjct: 48  LAAGREPI-SLLVEEPWIEGMSQTFDVVDKRWGTDIPVYVASPEQLRQLTGYRLHRGALS 106

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 L    +  R+++ + V++++ D  N+GA++RSA A   D ++ T          
Sbjct: 107 AMRRWPLPSVEETCRDARRVAVMENIVDHTNVGALMRSAAALDVDAVLVTPSCGDPLYRR 166

Query: 176 LAKSASGALEHIPYIRIS------NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN-- 226
            A+ + G +  IP+ RI            L+++ S GF T+ ++ SD    L++  +   
Sbjct: 167 AARVSMGTVFQIPWTRIGGDDKHFWPRRGLEELRSLGFTTVAMALSDDSISLDELTRRLN 226

Query: 227 ---------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                    DK+ALI G EG GL   T   A     + M   + +LNV+ ++AVA Y T
Sbjct: 227 NSPESADHIDKLALIFGTEGDGLSRHTIAGADLTVKIPMSHGVDSLNVAASSAVAFYAT 285


>gi|269956236|ref|YP_003326025.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304917|gb|ACZ30467.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 276

 Score =  191 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 10/246 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++    ++                +  AL    R    L+A +   +  D  A+ P
Sbjct: 19  DYTDLKDVKLRAVREPAEGLYMAESSTVIRRALAAGHRPRSLLMADRWLESMADVIADWP 78

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVN 142
              PV     + +++I G       LA    P L P  + V        ++ + VL+ V 
Sbjct: 79  -GVPVFVGSEEVLEQITGFHLHRGALAAMHRPALMPVRELVASARGGAGARRVAVLEDVV 137

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+GA  RSA A   D ++ T R +        + + G +  +P+ R+      L+++
Sbjct: 138 DHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLETWPGGLREL 197

Query: 203 HSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
              GF  + L+ SD    L++      +K+A++LG EG G+     +    +  + M G 
Sbjct: 198 QDDGFVVVALALSDDAVSLDELAADPPEKLAVVLGTEGHGMTAAALDACDVVVKIPMAGG 257

Query: 260 IKALNV 265
           + +LNV
Sbjct: 258 VDSLNV 263


>gi|194366972|ref|YP_002029582.1| TrmH family RNA methyltransferase [Stenotrophomonas maltophilia
           R551-3]
 gi|194349776|gb|ACF52899.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
          Length = 278

 Score =  191 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           + L LYG + V A  +   + + +L   ++ + R+       + +    + V    ++K+
Sbjct: 37  DELRLYGWNAVQALFDKRPQALRKLYLVESLIPRMQPVLKWCVANRVGYRVVEEGDLNKL 96

Query: 105 VGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                 H+GL  +       PL     D      L + LD V +PHN GAILRSA  F  
Sbjct: 97  AATT-HHEGLVADVLRAPVVPLAQWLEDLGEGPALALWLDGVGNPHNFGAILRSAAHFGV 155

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++     + + S   A+ A G  E +P +++ +   A+ ++ + GF       +  + 
Sbjct: 156 KALLLPAGSTLALSGAAARVAEGGAESVPLVQLPDNAQAMAQLRAAGFGLAATLVEGGED 215

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277
           + +     ++  ++GAEG+G+             +   G +++LNV++A AV L  + ++
Sbjct: 216 VFRASLPARLVYVMGAEGEGMDRSLASECDLQVSIPGSGAVESLNVASATAVLLAQWASR 275

Query: 278 NH 279
            H
Sbjct: 276 RH 277


>gi|86143085|ref|ZP_01061507.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
 gi|85830530|gb|EAQ48989.1| putative rRNA methylase [Leeuwenhoekiella blandensis MED217]
          Length = 268

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 101/260 (38%), Gaps = 7/260 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++ +  +KSR   +     + GV  ++ AL+   +    L  +  A+A  +  A
Sbjct: 9   QNPTVKQLVALQEKSRIRRKTGEFLIEGVREINLALDAGFQLTQLLFCS--AIADAEELA 66

Query: 86  NLPHPFPVKT----VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
            L      +     V  +   KI  +      +A   A   + +   +  + L+MV +  
Sbjct: 67  ALQSKLSAEVTQIEVTEEVYKKIAYRSGTEGIIASAKAKKNTLSALDLPKNPLIMVAEAP 126

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A   D  I     +   +  + +S+ G L  +P     +  + +  
Sbjct: 127 EKPGNIGALLRTADAAGVDAFILANPRTDLYNPNIIRSSVGGLFTVPVA-TGSTQEVIDF 185

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +                  E++      AL++G E  GL    +  A     + M G + 
Sbjct: 186 LKQKNIAIYTAILQEAISYEKQDFTTASALVVGTEADGLSEAWRAAAKQNIIIPMQGRLD 245

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++NVS AAA+ ++  +    
Sbjct: 246 SMNVSVAAAILIFEARRQRG 265


>gi|226324182|ref|ZP_03799700.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
 gi|225207731|gb|EEG90085.1| hypothetical protein COPCOM_01961 [Coprococcus comes ATCC 27758]
          Length = 159

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 76/156 (48%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            LDA     LLMVLD++ DP N+G ILR+  A    G+I +       +  + +S  G++
Sbjct: 3   DLDAQGRKPLLMVLDNLQDPGNLGTILRAGEAAGVTGVIMSHDCVDIYNPKVIRSTMGSV 62

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P++ + +L + L+ +   G  +       K   +QE      A ++G EG GLR + 
Sbjct: 63  YRMPFVYVEHLPETLEVLAEAGIHSYAAHLKGKNSYDQEDYTRGTAFLIGNEGNGLRDEV 122

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + A     + M G +++LN + A++V ++      
Sbjct: 123 ADVAECYIKIPMCGEVESLNAAVASSVLMFEAARQR 158


>gi|239932317|ref|ZP_04689270.1| rRNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 289

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 100/262 (38%), Gaps = 12/262 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKI---FQLLATKNALARLDW 83
           R  + + +     R+    E LFL  G   V  A  +    +    +L  T  A  R   
Sbjct: 15  RSPRVLAARRLAKRNFRGKERLFLAEGPQAVREAAAHREGPVPTLVELFTTPEAAERYAD 74

Query: 84  DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDH 140
                      V     Q I  I       QGL      L +P    +    +L+ VL H
Sbjct: 75  IVGGARGAGARVHLASEQVIADI-STTVTPQGLVGVCRFLDTPFEQILAARPRLVAVLAH 133

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G +LR A A   + ++ T       +    +++ G+L H+P      +  A+ 
Sbjct: 134 VRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAIGVPVEQAVA 193

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +   G + +       + L+ E+         A + G E  GL  +T+    ++  + +
Sbjct: 194 GLRGTGVRVLAADGAGDRDLDDELDKGTMGGPTAWVFGNEAWGLPEETRALTDAVVRVPI 253

Query: 257 PGIIKALNVSNAAAVALYITQN 278
            G  ++LN++ AAAV LY +  
Sbjct: 254 HGKAESLNLATAAAVCLYASAR 275


>gi|227488138|ref|ZP_03918454.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092000|gb|EEI27312.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 436

 Score =  191 bits (486), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 8/253 (3%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFP 92
           +  ++S    + +   + G ++V AA+   +     +  TK+A AR      A       
Sbjct: 115 AKLKRSAVRKKEKRFLVEGENSVEAAVATGAAT--DIFLTKSAAARFTDIVAAAKAMGMY 172

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAIL 151
           V  +  +   K +       G+      +L    D +     L+ V    N+P N G ++
Sbjct: 173 VHFID-EKAAKSLQDTVTSTGIFAVCREVLWSARDVLNGRPKLVSVPVETNEPGNAGTLI 231

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A A   D ++        +S   A+S++G+L HIP  R  N+   +  +   G     
Sbjct: 232 RVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARERNIMKVVSMLRERGLAIAA 291

Query: 212 LSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            ++D +  L    ++ +   A + G E  GL  + Q  A     + + G  ++LN++ AA
Sbjct: 292 TAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEEVQAQADYRVRIPIRGRAESLNLATAA 351

Query: 270 AVALYITQNHFAK 282
           ++ L+ +  + AK
Sbjct: 352 SICLFESSKYQAK 364


>gi|219684256|ref|ZP_03539200.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
 gi|219672245|gb|EED29298.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii PBr]
          Length = 246

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 113/241 (46%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKTKEIERLAKTQNIKIIRISTNELDKIL-KSKDHRG 63

Query: 114 LALETA-----------PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+                   L+  +  +   +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNEKTQTKDFENLLETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++TT++ S  ++  + +++SGA +++  I ++N+ + +  +   GF         +   
Sbjct: 124 LVVTTQKRSAKDNLTVLRTSSGASQYVKKITVTNINNTIYSLKKHGFWIYAGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|291531350|emb|CBK96935.1| rRNA methylases [Eubacterium siraeum 70/3]
          Length = 303

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 9/237 (3%)

Query: 46  PENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
              +F+    TV   AL+   + I      K    R +         PV T   + +  +
Sbjct: 60  EHGIFIAESQTVIEVALDAGCKPISMFTDRKYINDRANGIIERCGDIPVYTADSKIMSGL 119

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            G E     L     P      +  +N++ + VL+++ D  N GAI+RSA A   D ++ 
Sbjct: 120 TGYELTRGMLCAMERPAPKRAEELCKNARRIAVLENIADVSNTGAIIRSAAALGIDAVLI 179

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-----KMHSWGFQTIGLSS-DSKK 218
           T            + + G +  IP+  I       Q      ++S GF+T  ++  D+  
Sbjct: 180 TPSCCDPLCRRAIRVSMGTVFLIPWGYIGEDEHWWQSHGPAYLNSLGFKTAAMALTDNSV 239

Query: 219 PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ++ +     +++A+ILG+EG GL  KT +       + M   + +LNV  AAAVA 
Sbjct: 240 SIDDKTLQSEERLAIILGSEGYGLSQKTIDGCDYTVKIPMYHGVDSLNVGAAAAVAF 296


>gi|78189691|ref|YP_380029.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
 gi|78171890|gb|ABB28986.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
          Length = 265

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 102/247 (41%), Gaps = 5/247 (2%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLPH 89
           ++  + + K +H    +     G+ TV       P       L  +            P+
Sbjct: 14  RRYAALHHK-KHRDSDKLFLAEGLRTVRELCQQLPHEDFLVALLLRPHAEAEALTFAQPY 72

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              + ++  +   ++          A+   P   PT+   +   L++ LD V DP N+G 
Sbjct: 73  AHKLFSITAKECAQLADTTTPSGIFAIFRQPTFQPTIVNPQRRSLVVALDDVQDPGNVGT 132

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A  F  D ++ ++  +   +  + +S +G+L  +P+ R + +   L +    G+  
Sbjct: 133 IMRTAAWFGVDALLCSQGTADLYNPKVVRSCAGSLFALPHYRCNLMVHELSRWQQQGYSI 192

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVS 266
           +  S + +     E   DK  +++G E  G+    Q +A  +  +   G    +++LN S
Sbjct: 193 VCSSLEGRDICGGEAFGDKTVIVIGNEANGVSQAVQASADMLVRIPHAGSKPAVESLNAS 252

Query: 267 NAAAVAL 273
            AAA+ +
Sbjct: 253 IAAAILI 259


>gi|24214562|ref|NP_712043.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|24195527|gb|AAN49061.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
          Length = 220

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 8/195 (4%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVL 138
            +P    V  V    +D +V     HQG+    AP    T D               ++L
Sbjct: 18  KIPSFVQVHKVSVSKLDSLV-PGRNHQGIVALKAPSKQTTFDKKNLEEFLSEKPGAFLIL 76

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+G ILR+A  F    II  +R S   + V+ K ASGAL  +    + NL + 
Sbjct: 77  DRIQDPGNLGNILRTAECFGVTNIILPERESAGITPVVEKVASGALSFLKIFTVKNLANT 136

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L+ +   G+  +  S    +   +    +++ +++G EG+G++    E +  +  + M G
Sbjct: 137 LELLKENGYWIVSTSDRGTEDWSKLPDLNELVILMGNEGEGIKRILMEKSDFVLRIPMHG 196

Query: 259 IIKALNVSNAAAVAL 273
            + +LNV+ A  + L
Sbjct: 197 NLSSLNVTVATGIVL 211


>gi|62390273|ref|YP_225675.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325610|emb|CAF21399.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
          Length = 282

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 6/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT-VP 97
           ++    + +   + G ++V AA+   +     L  T++A  R +          V T   
Sbjct: 35  RAAQRKKDKRFLVEGENSVEAAVATGAAT--DLFVTESAAERFEEIVRTAGYMNVYTHAI 92

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                K +       G+      +L     A+    +L+ V     +P N G ++R + A
Sbjct: 93  TDKAAKHLSDTVTTTGIFALCDDVLWSVGKAITGQPRLVSVPVETREPGNAGTLIRVSDA 152

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++          A   +S++G+L HIP  R +N+ D L ++ S G Q +  S+D 
Sbjct: 153 VGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADVLGQLRSKGLQILATSADG 212

Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+          A + G E  GL       A     + + G  ++LN++ AA++ LY
Sbjct: 213 EVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADHRVRIPIRGRAESLNLATAASICLY 272

Query: 275 IT 276
            +
Sbjct: 273 ES 274


>gi|332878309|ref|ZP_08446035.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332683760|gb|EGJ56631.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 269

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 112/257 (43%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   KK+ + ++K+R   +     + G   V  A+      I  LL             
Sbjct: 8   QNPLIKKIFALSEKARMRKKEGLCVIEGAREVRLAIQ-GGYDIETLLFQPEIFKEEALQQ 66

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L     P  V  +  +  +++  + +    +A+   P  +    A+R   +L+V +   
Sbjct: 67  LLALYRKPIEVIRLSKEVYERLSYRSSTEGLIAVAKTPPHTLEALALRERSILLVAEAPE 126

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P NIGA+LR+A A + +G+I     +   +  + +++ G +  +P   + + T+ +  +
Sbjct: 127 KPGNIGAMLRTADAANIEGVIIANPKTDLYNPNIIRASVGCVFTVPIA-VGSTTEVIDYL 185

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               F     +  + KP  +    +K  A+++G E +GL  +  + +T    + M G+I 
Sbjct: 186 KKKDFNIYCAALSASKPYYEVPFAEKNTAIVVGTEDEGLTQEWLKNSTQNIIIPMEGVID 245

Query: 262 ALNVSNAAAVALYITQN 278
           ++NVS AAAV ++  + 
Sbjct: 246 SMNVSVAAAVLIFEAKK 262


>gi|299148911|ref|ZP_07041973.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
 gi|295087094|emb|CBK68617.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
 gi|298513672|gb|EFI37559.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
          Length = 280

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           ALN     +  L   K+               PV T   + +  + G       L     
Sbjct: 47  ALNAGYEPLALLCEQKHITGDAAGIIERCGDIPVYTGERKLLATLTGYTLTRGVLCAMRR 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L    +  R ++ ++V++ V D  NIGAI RSA A   D I+ T+      +    + 
Sbjct: 107 RALPSVEEVCRKARRIVVIEGVVDATNIGAIFRSAAALGIDAILLTRNSCDPLNRRAVRV 166

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILGAE 236
           + G++  IP+  +        ++   GF+T+ ++  +    ++  I     K+A+++G E
Sbjct: 167 SMGSVFLIPWTWLDGSP---NELRKLGFRTVAMALTEKSISIDNPILATEPKLAIVMGTE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G GL+ +T   A  +  + M   + +LNV+ A+A+A +  +  
Sbjct: 224 GDGLQNETINEADYVVRIPMANGVDSLNVAAASAIAFWQLRVQ 266


>gi|313671984|ref|YP_004050095.1| RNA methyltransferase, trmh family, group 3 [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938740|gb|ADR17932.1| RNA methyltransferase, TrmH family, group 3 [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 230

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 7/227 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            +  YG +    ALN+   KI +    K+   +   D  +      + +      +  GK
Sbjct: 3   RMIFYGKNPFFEALNS--NKIIKAYIRKDDRIK---DLLIRKKILFEELTADKHKEKFGK 57

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           +A  QG A E         +  +NS  + +LDH+ DPHN GAI+R+   F     I  K 
Sbjct: 58  DA--QGYAFEFEVEYCDLDELGQNSGNICILDHIQDPHNFGAIVRAGHCFGVRNFIIAKD 115

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                + V+ KS++GA  +  +  + N+  +++++   G+       + +  L     N+
Sbjct: 116 NQSPVTPVVVKSSAGAAIYSRFYEVVNINRSIEELKEKGYWIYAADMNGETKLGDIRPNE 175

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              +I+G+EG+G+R    + A  +  + M G+I +LN S +AA+A Y
Sbjct: 176 PYVVIIGSEGEGIRKNVLKKADVVFRIPMRGVIDSLNASQSAAIAFY 222


>gi|290476233|ref|YP_003469133.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289175566|emb|CBJ82369.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 339

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 15/248 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVP 97
              + E   +YG +   A   N    I +       T      L W A     + V  V 
Sbjct: 94  RRQRLEETRIYGENACQAMFKNRPEAIVRAWFVQSVTPRFRDALKWMAANRKAYHV--VD 151

Query: 98  PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + K  G E  H G+           +   L        ++ L++V +PHN+GAI+RS
Sbjct: 152 DEELVKASGTE-HHGGVCFLIKKRNGLDVETYLQQAPAKDCVLALENVGNPHNLGAIMRS 210

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   G+I  +  +  ES    ++A G  EHI  I     T  L +    G+  +  S
Sbjct: 211 CAHFGVQGVIL-QDVAMLESGAAVRTAEGGAEHIKGIDADGFTTTLNQFRCAGYTIVTTS 269

Query: 214 SD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S      L +    +K+ L+LG E  GL     E       +   G I++LNVS A  + 
Sbjct: 270 SHKGSTTLAKADLPEKMVLVLGQESDGLSDSIWEDGDIRLSIGGTGRIESLNVSVATGIM 329

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 330 LAEWWRQN 337


>gi|239047833|ref|NP_001141631.2| hypothetical protein LOC100273751 [Zea mays]
 gi|238908839|gb|ACF86752.2| unknown [Zea mays]
          Length = 549

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 117/279 (41%), Gaps = 53/279 (18%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK------NALARLDWDA-------NLPHPFPVKTVP 97
           +YGV  V AAL    R+ + L   +      N   R D  A              V   P
Sbjct: 260 VYGVGPVLAALMARRREFYALYIQESMDLSGNNKKRKDKKAVEKVLRMAEEIGLNVIETP 319

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLS---PTLDAVR----NSQLLMVLDHVNDPHNIGAI 150
              ++ +V     HQG+ L+ +PL       LD VR     + + + LD + DP N+GAI
Sbjct: 320 KHDLN-MVVDNRPHQGVVLDASPLEMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAI 378

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA  F   G++   + S   S V++K+++G+LE I  +   N+   L      G++ +
Sbjct: 379 IRSAYYFGAQGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVL 438

Query: 211 -GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM------------P 257
            G  ++   PL Q        L++G+EG GLRP  + + T +  +               
Sbjct: 439 GGTIANKAVPLSQVELGVPTILVMGSEGTGLRPLVERSCTHLVRIPGNVDVSVEGADADA 498

Query: 258 GI---------------IKALNVSNAAAVALYITQNHFA 281
           G                +++LNVS AA V LY    H A
Sbjct: 499 GEEGDSSSNRDLRSFLAVESLNVSVAAGVLLY----HLA 533


>gi|300781270|ref|ZP_07091124.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300532977|gb|EFK54038.1| TrmH family rRNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 269

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 6/244 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++    +       G ++V AA+   +     L  T+ A  R            V T   
Sbjct: 24  RAAGRKKAGRFLAEGENSVEAAVATGAAT--DLFVTEAAADRFYDVVTTAAYMDVFTHAI 81

Query: 99  QTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVA 156
                    + VH  G+     P+       +     L+ V    NDP N G I+R   A
Sbjct: 82  TDKAAQSLTDTVHTTGVFAVCKPVTWTLGSVLTGRPKLVAVCVGTNDPGNAGTIIRLVDA 141

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I        ES  + +S++G+L H+P  R  ++  A+ ++ + G +    +   
Sbjct: 142 LGADAVIFAGDTVDPESPKVVRSSAGSLFHVPVARERDVNGAIGQLRAAGLKLAATTMGG 201

Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+      +   A + G E  GL       A     + + G  ++LN+S AA++ L+
Sbjct: 202 EVSLDDPGNALDQPTAWLFGNEAHGLPDDVLAAADYRVSIPIKGSAESLNLSTAASICLW 261

Query: 275 ITQN 278
            +  
Sbjct: 262 ESAK 265


>gi|145295523|ref|YP_001138344.1| hypothetical protein cgR_1451 [Corynebacterium glutamicum R]
 gi|140845443|dbj|BAF54442.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 271

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 6/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT-VP 97
           ++    + +   + G ++V AA+   +     L  T++A  R +          V T   
Sbjct: 24  RAAQRKKDKRFLVEGENSVEAAVATGAAT--DLFVTESAAERFEEIVRTAGYMNVYTHAI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                K +       G+      +L     A+    +L+ V     +P N G ++R + A
Sbjct: 82  TDKAAKHLSDTVTTTGIFALCDDVLWSVGKAITGQPRLVSVPVETREPGNAGTLIRVSDA 141

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++          A   +S++G+L HIP  R +N+ D L ++ S G Q +  S+D 
Sbjct: 142 VGADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADVLGQLRSKGLQILATSADG 201

Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+          A + G E  GL       A     + + G  ++LN++ AA++ LY
Sbjct: 202 EVDLDDADELLAKPTAWLFGNEAHGLDESLLAQADHRVRIPIRGRAESLNLATAASICLY 261

Query: 275 IT 276
            +
Sbjct: 262 ES 263


>gi|260911205|ref|ZP_05917808.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634685|gb|EEX52772.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 267

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 6/248 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +  AL+     +  L   ++ +             P
Sbjct: 20  LTETQLRNRLQPDKGVFIAESPKVIRVALDAGYEPLSMLCEERHIVGDAADIIARCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T     + ++ G       L       +    +   N+  + V+D V D  NIGAI R
Sbjct: 80  VFTGERTLLAQLTGYTLTRGVLCAMRRKPMGNVAEVCGNATRVCVIDGVTDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++  K      +    + + GA+  +P+   +     L ++ + GF+T  +
Sbjct: 140 SAAALGIDAVVLAKNACDPLNRRAVRVSMGAVFLVPW---TWAEQPLAELSTIGFRTAAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +   +  PL         ++A+++G EG GL  +    A  +  + M   + +LNV+ A+
Sbjct: 197 ALTHNSIPLNDARLKAEPRLAIVMGTEGDGLPSEVIAQADYVVRIPMAHGVDSLNVAAAS 256

Query: 270 AVALYITQ 277
           AVA +  +
Sbjct: 257 AVAFWELR 264


>gi|227545915|ref|ZP_03975964.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227213549|gb|EEI81398.1| rRNA methylase [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 292

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 30/277 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WD 84
           Y  +     ++R               +  AL      +  LL  +  L  +       D
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPL-SLLVEEPWLEGMKDTFDFID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV    P+ + ++ G       L       L    +  ++++ + V++++ D 
Sbjct: 76  GRWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKSARRVAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D       
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 198 -----ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGL 240
                 + ++ S GF T+ ++ + +     E+              DK+ALI G EG GL
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGL 255

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 256 SHHTISRADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|254458669|ref|ZP_05072093.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
 gi|207084435|gb|EDZ61723.1| tRNA/rRNA methyltransferase [Campylobacterales bacterium GD 1]
          Length = 250

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 105/231 (45%), Gaps = 7/231 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG 106
           LYG + V   L + S ++ +L +A+ N      +            +      ++ +I  
Sbjct: 20  LYGRNVVVEVLQDSSVEVHKLHMASSNKPDGAIKTILALAKTRKIEITYHEKSSLSRISK 79

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                QG+A++       +   +++ +   L+ LD + +P N+G I+RS  A + DGII 
Sbjct: 80  NAKQDQGVAVDIIAQTYKSAHEIKDMKSFRLIALDGIQNPQNLGMIIRSCAAGNVDGIIL 139

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K+ S   S ++ K++SG L  +P    + L +    +     +   LSS +K  +   +
Sbjct: 140 PKKSSAKISPLVIKASSGTLFKLPIYYCNTLDEIFPDL-DADTRIYSLSSHAKTSIYDVV 198

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +K   +LG E  G+ P+ ++       + M   +++LNV+  A++  ++
Sbjct: 199 PTEKSIFVLGNESDGVSPEVEKLCNDSISIPMQRGVESLNVAVTASLLAFM 249


>gi|116333650|ref|YP_795177.1| rRNA methylase [Lactobacillus brevis ATCC 367]
 gi|116098997|gb|ABJ64146.1| rRNA methylase [Lactobacillus brevis ATCC 367]
          Length = 256

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 111/266 (41%), Gaps = 17/266 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI S ++           +++ + S  +K R  ++     L   H V  A+    + + 
Sbjct: 3   EKITSSQNRRVQ-------EWRSLAS--KKGRKATR--TYLLESWHLVQEAIK-AQQPLT 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            ++ T   L+      +LP   P+  +   ++ K +G     QG+           +D  
Sbjct: 51  AIMGTAEQLS--AHADSLPTDVPIYELT-DSLAKTIGDTGTPQGIFATAPMPDETAIDPK 107

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +   + LD+V DP NIG ++R+A A    G++  K  +      + ++  G+  HI  
Sbjct: 108 TATGAWLFLDYVQDPGNIGTMVRTADAAGLTGVVFGKGTASRFLPKVLRAMQGSQFHIQL 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  ++L D +    +      G + D   +           A+++G EG G+ P  Q   
Sbjct: 168 VE-ADLHDWIGAFTARQLPVYGTNLDPQAQDYRDVPALTNGAIVMGNEGNGMAPDLQRLT 226

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
           T   ++ + G  ++LNV+ AA V ++
Sbjct: 227 TQNLYIPIKGQAESLNVAVAAGVVMF 252


>gi|262379400|ref|ZP_06072556.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|262298857|gb|EEY86770.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 263

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 107/257 (41%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   +++ +  +     L G H   + L   ++KI  L +T+ AL   D+
Sbjct: 13  SKDNPKIKHLRGLIEQNSYRKKQRQTILEGTHLCLSWLQ-ENKKIHSLFSTEQALNHPDF 71

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  L +      V  + + + +        LA      L      ++     ++L++V D
Sbjct: 72  EQILEYYQGHVFVLSEALYRDLSTLGTS--LACLAIIDLPTNTQPLQYHLDTLILENVQD 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   ++ T+  +   S  + ++  GA   +       L D L+K  
Sbjct: 130 PGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLEDILEKFE 189

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    SS   + + Q+      A ILG EG+G      + A ++  +  PG  ++L
Sbjct: 190 ---IPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQPGGQESL 245

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 246 NVAVAGSICFFEMVRQR 262


>gi|255319437|ref|ZP_05360652.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|255303505|gb|EET82707.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
          Length = 258

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 107/257 (41%), Gaps = 7/257 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   +++ +  +     L G H   + L   ++KI  L +T+ AL   D+
Sbjct: 8   SKDNPKIKHLRGLIEQNSYRKKQRQTILEGTHLCLSWLQ-ENKKIHSLFSTEQALNHPDF 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +  L +      V  + + + +        LA      L      ++     ++L++V D
Sbjct: 67  EQILEYYQGHVFVLSEALYRDLSTLGTS--LACLAIIDLPTNTQPLQYHLDTLILENVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A +   ++ T+  +   S  + ++  GA   +       L D L+K  
Sbjct: 125 PGNVGTLLRSAAAANIQQVVCTQGSASLWSPRVLRAGMGAHFSLNIYENVQLEDILEKFE 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    SS   + + Q+      A ILG EG+G      + A ++  +  PG  ++L
Sbjct: 185 ---IPVFVTSSHQSESIYQQDLTQPCAWILGNEGQGASAYALQHAKAVV-IPQPGGQESL 240

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A ++  +      
Sbjct: 241 NVAVAGSICFFEMVRQR 257


>gi|296271712|ref|YP_003654343.1| RNA methyltransferase [Arcobacter nitrofigilis DSM 7299]
 gi|296095887|gb|ADG91837.1| RNA methyltransferase, TrmH family, group 3 [Arcobacter
           nitrofigilis DSM 7299]
          Length = 230

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 6/229 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   V   L N    I +++ +K  L +  +   L     +  +  +    +  K 
Sbjct: 1   MIIYGKQIVLYVLENHPSIIEEVMFSKE-LDKKIFSKFLKLGKKIIRLDNKKAQSLA-KG 58

Query: 109 AVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             HQG  L+         ++ ++ +  ++VLD + D  NIGAI R+A A   DGI+    
Sbjct: 59  GNHQGFFLKLKEEFDYTPINEMKQNNFIVVLDGLTDVGNIGAITRTAYALGVDGIVAAGV 118

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIK 225
            S +ES V+ +++SGA+  +P+    N  D   ++   GF  IG + +           K
Sbjct: 119 KSLNESGVI-RTSSGAMLDMPFSLYPNSLDLANELKQSGFALIGATMNGTDLKKYGTITK 177

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +DK+AL LG+EG+GL  K          + M     +LNVS AA + +Y
Sbjct: 178 DDKVALFLGSEGEGLSNKIIGKLDLKVSIGMENNFDSLNVSVAAGILIY 226


>gi|251810585|ref|ZP_04825058.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876415|ref|ZP_06285282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           SK135]
 gi|293366881|ref|ZP_06613557.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805745|gb|EES58402.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295440|gb|EFA87967.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           SK135]
 gi|291319182|gb|EFE59552.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329729977|gb|EGG66368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU144]
 gi|329734456|gb|EGG70769.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU045]
 gi|329736238|gb|EGG72510.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU028]
          Length = 246

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 108/267 (40%), Gaps = 24/267 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++S   K++  ++  KK        R   +     + G+H +  A  +    I 
Sbjct: 2   EQITSAQNS---KIKNANKLKKK--------RERDKTGLALVEGIHLIEEAYQSQIEVIQ 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             +   + ++    D        V  +  +  + + G     QG          PT D  
Sbjct: 51  LFIVDTDRMSSSIIDYAKE----VYQINLKVAEALSGT-VTPQGFFAIIK---KPTYDKT 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              Q+L++ D + DP N+G ++R+A A   D I+  K  +      + +++ G++ HIP 
Sbjct: 103 LAKQVLLI-DRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I      D    +H +     G + ++             ALILG EG+G+     +  T
Sbjct: 162 I----FDDINNYIHQFNGPVYGTALENAVSFNDIEAQANFALILGNEGEGVNSDLLKETT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
               + + G  ++LNV+ A ++ +Y  
Sbjct: 218 QNLTIPIYGKAESLNVAIAGSILMYQL 244


>gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 278

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 99/258 (38%), Gaps = 8/258 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ +QK ++ ++       G+  V  AL N    I  L+ +K+ +     + 
Sbjct: 21  SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDAL-NLEWTIQTLIFSKSKIGDTAIEN 78

Query: 86  NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              H       V     + ++ I  ++     + +         +   RN  + + LD V
Sbjct: 79  IAAHTIANGGLVIKASKKVMESITRRDNPQTAIGIFKQQWQPLEMIKRRNEDVYVALDRV 138

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+  A    G+I     +   S    ++  G++  IP  R          
Sbjct: 139 RDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLETVRATMGSIFSIPLYRFDESAFLNWS 198

Query: 202 MHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            H  G   +G          +   KN  + L++G E +GL          +A +   G  
Sbjct: 199 AHFKGM-VVGTHLKGSIDYRKIDFKNGPVILLMGNEKQGLPDTLANRCDQLARIPQSGRA 257

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A A+ LY  + 
Sbjct: 258 DSLNLAVATAIMLYEIRR 275


>gi|15828649|ref|NP_326009.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089591|emb|CAC13351.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 229

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L L G ++V  AL N   KI  L    + +       N      ++    Q +D +V + 
Sbjct: 4   LMLCGKNSVLDALENNV-KIEMLYVLASKVHEFKHIKN----IKIEVKDKQFLDSLVKE- 57

Query: 109 AVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             HQG       L   +LD  +++ + +++LDH+ DP+N GAILRSA AF    II   +
Sbjct: 58  -NHQGYVAVLKSLNFVSLDQMIKSKETILILDHLEDPYNFGAILRSANAFGIKNIIYPIK 116

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN 226
            +   ++ + K +SG   ++ + + ++++  + K+   G+     S D + + + +   N
Sbjct: 117 RAVDINSTVLKVSSGGFVNLRFYKSNSISATIDKLKKQGYWIYSSSLDPTSEDINKISFN 176

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +   L++G E KG+   T++ +  + ++   G +++LN S AA +  
Sbjct: 177 NPSVLVIGNEKKGISQTTKKQSDQLFYIKTKGSVQSLNASVAAGIIF 223


>gi|229817686|ref|ZP_04447968.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
           20098]
 gi|229785475|gb|EEP21589.1| hypothetical protein BIFANG_02958 [Bifidobacterium angulatum DSM
           20098]
          Length = 290

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 102/271 (37%), Gaps = 22/271 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85
           Y  +     ++R               +  AL      +  L         A      D 
Sbjct: 17  YVNLTEIQLRNRLEPAKGLFIAESPKVIDRALAAHREPLSLLVERPWLEGMASMFARIDE 76

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV    P+ + ++ G       L+      L    +  R +  + V++++ DP 
Sbjct: 77  QWGPDIPVYVASPEQLKRLTGYRLHRGALSAMRRWPLPSVEEVCRGAHRVAVMENIVDPT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS------NLTDAL 199
           N+GA++RSA A   D ++ T           A+ + G +  +P+ RI            L
Sbjct: 137 NVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIDGDDKHYWPFKGL 196

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGLRPKTQET 247
           +++HS GF T+ ++ +       E+              DK+ALI G EG GL   T   
Sbjct: 197 EELHSLGFTTVAMALEDDSISLDELTRRLNSSASDPQHIDKLALIFGTEGDGLNRHTIAR 256

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A     + M   + +LNV+ ++AVA Y T+ 
Sbjct: 257 ADLTVKIPMSHDVDSLNVAASSAVAFYATRR 287


>gi|325002579|ref|ZP_08123691.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia sp. P1]
          Length = 266

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/251 (27%), Positives = 117/251 (46%), Gaps = 11/251 (4%)

Query: 40  SRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLA---TKNALARLDWDANLPHPFPVKT 95
            R  S  +    +YG   V  AL++P  ++ +++     + A  R    A      PV+ 
Sbjct: 16  DRAVSPKDRFITVYGRKPVLEALSDPDLEVDKIVLADSVRGAGEREITAAARGRGVPVQR 75

Query: 96  VPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGA 149
              Q +  + G     QG+  +  AP ++P    +     R    ++VLD V +P N+G 
Sbjct: 76  ASAQRVKVLAGNGRHDQGVLADVVAPRMAPLPVFLSDLGSRRPASVLVLDAVTNPSNVGM 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILRSA A   DG++  +R  P+   ++ K+++G     P +R     + +  M   GF  
Sbjct: 136 ILRSATAAGLDGVLLPRRGVPAIDPLVIKASAGVAFAAPVLRCGTAAEGVDLMRDAGFSV 195

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            GL + S   L+ E+ + ++AL+LG E  GL    +E    +  L M G +++LNV++A 
Sbjct: 196 FGLDTGSGSLLDAELPH-RVALVLGNETDGLTEDVRERLDGILSLPMYGGVESLNVASAG 254

Query: 270 AVALYITQNHF 280
           AVA Y      
Sbjct: 255 AVAAYELLRRR 265


>gi|212716042|ref|ZP_03324170.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661409|gb|EEB21984.1| hypothetical protein BIFCAT_00955 [Bifidobacterium catenulatum DSM
           16992]
          Length = 288

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 107/273 (39%), Gaps = 24/273 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDA 85
           Y  +     +++               +  AL      I  L         A      D 
Sbjct: 17  YTNLTEIQLRNKLEPSKGLFIAESPKVIDRALAANREPISLLVEEPWIEGMAETFTLIDN 76

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDP 144
                 PV    P+ + ++ G   +H+G          P+++ V R ++ + V++++ D 
Sbjct: 77  RWGTDIPVYVASPEQLKQLTGYR-LHRGALAAMKRWPLPSVEEVCRGARRIAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------A 198
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI            
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDRHYWPFTG 195

Query: 199 LQKMHSWGFQTIGLSSDSKKP------------LEQEIKNDKIALILGAEGKGLRPKTQE 246
           +Q++H  GF T+ ++ +                 +++   DK+ALI G EG GL   T  
Sbjct: 196 MQELHDLGFTTVAMALEDDSISLEELVRRLNNADDEKDHIDKLALIFGTEGDGLSHHTIS 255

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A     + M   + +LNV+ ++AVA Y T  H
Sbjct: 256 RADLTVKIPMSHGVDSLNVAASSAVAFYSTAVH 288


>gi|84496489|ref|ZP_00995343.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84383257|gb|EAP99138.1| rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 269

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 6/241 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R   +           +  AL    R    L+A +      D  A   
Sbjct: 15  DYVSLTDVALRRRTEPERGLYIAESEKVIRRALAAGHRPRSYLMAERWLTDLGDLVAQAE 74

Query: 89  H-PFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               PV       I+   G   +H+G LA    P L    + V +++ ++V++ V D  N
Sbjct: 75  QDGIPVFVADHDVIEGFTGFH-LHRGTLASMQRPELKSVEEVVADARRVLVIEDVVDHTN 133

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA+ RSA A   D ++ T R +        + + G +  +P+ RI      +  +   G
Sbjct: 134 VGAVFRSAAALGMDAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPRGINLLRDSG 193

Query: 207 FQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F    L+ SD    L++      +++AL+LG EG GL  +T E A  +  + M G + +L
Sbjct: 194 FTVAALALSDDAVGLDELAANPPERLALVLGTEGDGLSRRTVEGADVVVKIPMAGGVDSL 253

Query: 264 N 264
           N
Sbjct: 254 N 254


>gi|289644294|ref|ZP_06476380.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
 gi|289505906|gb|EFD26919.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
          Length = 310

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 8/255 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  +     + R           G   +  A     R    LL     +A +   A+L
Sbjct: 48  RDYVGLTDVALRRRREPAEGLFIAEGEMVIERARRAGYRP-RSLLVGPAKVATVP--ADL 104

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               PV    P  +  I G + VH+G LA       +P  D +  ++ ++V + +    N
Sbjct: 105 EPGVPVYLAGPDVLATITGFQ-VHRGALASMCRRPPAPAADVLATARRVLVCEDIVSHTN 163

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RSA     D ++ +   +        + + G +  +PY R+     AL  +   G
Sbjct: 164 LGAIFRSAAGLGMDAVLLSPSCADPLYRRSVRVSMGEVFAVPYARLDPWPAALSLLVKHG 223

Query: 207 FQTIGLSSDS-KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F  + L+  +   PL++      D++AL+LG+EG GL       AT    + M   + +L
Sbjct: 224 FMLVALTPSATAVPLDELAVSSYDRLALLLGSEGPGLTRDALGVATVRVRIPMAHGVDSL 283

Query: 264 NVSNAAAVALYITQN 278
           NV+  AA+A Y+   
Sbjct: 284 NVAATAAIACYVLGR 298


>gi|331697623|ref|YP_004333862.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952312|gb|AEA26009.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 279

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 7/232 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP-QTIDKIVGK 107
             + G   V  AL  P   + +L  T +A  R             + V         +  
Sbjct: 28  FLVEGAQAVREALAAPQ-AVHELFVTTDAAQRHPELVAAARTAGARVVDVTDGAAASLSD 86

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               QGL      L  P   A+  +  L+ VL  V DP N+G ++R A A   D ++   
Sbjct: 87  TVTPQGLVAVCDLLDVPLPQALGAAPQLVAVLVGVADPGNVGTVVRCADAAGADAVLLAG 146

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE----Q 222
                 +    ++++G++ H+P  R  +    L    + G   +   +  +  L      
Sbjct: 147 DTVDPHNGKAVRASTGSVFHLPLARDRDAGAVLAACRAAGLVLLAADAHGELDLHDPAAD 206

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +   ++A + G E  G+  +    A     + + G  ++LN++ AAA+ LY
Sbjct: 207 AVLGGRVAWVFGNEAHGVPDEVLAAADHRVSVPIHGRAESLNLATAAAICLY 258


>gi|297198451|ref|ZP_06915848.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197716141|gb|EDY60175.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 309

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 12/261 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           + R  +   +     R+    E LFL  G   V  A       + +L AT  A  R    
Sbjct: 38  SPRSPRVSAARRLAKRNFRGKERLFLAEGPQAVREA---AGHGLVELFATVEAAERYADI 94

Query: 85  ANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                     V       I  I       QGL      L +P  + +    +L+ VL +V
Sbjct: 95  IGEARAVQARVHLAAEDVIADI-STTVTPQGLVGICRFLDTPFEEILAARPKLVAVLANV 153

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N G +LR A A   + ++ T       +    +++ G+L H+P      + +A++ 
Sbjct: 154 RDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVEEAVEG 213

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           +   G + +         L+ E+         A + G E  GL  +T+  A ++  + + 
Sbjct: 214 LRRAGVRILAADGAGTDDLDAELDKGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPIH 273

Query: 258 GIIKALNVSNAAAVALYITQN 278
           G  ++LN++ AAAV LY +  
Sbjct: 274 GKAESLNLATAAAVCLYASAR 294


>gi|317488634|ref|ZP_07947177.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325831627|ref|ZP_08164844.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
 gi|316912286|gb|EFV33852.1| SpoU rRNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486498|gb|EGC88947.1| RNA methyltransferase, TrmH family [Eggerthella sp. HGA1]
          Length = 279

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 109/278 (39%), Gaps = 16/278 (5%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
            I  L+D    +L      Y  M     +    S            +  AL    R +  
Sbjct: 2   PIIHLEDLDDPRL----AAYSGMTDAQLRDCPDSTHGLFIGESRKVIERALAAGVR-MRS 56

Query: 71  LLATKNALAR----LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           L   +  L +    +D   +    FPV     +    + G E     LA    P L    
Sbjct: 57  LFMEEKWLDQTMPLVDSLLDGDPDFPVLVATREQFRALTGYEVTRGALAAFERPPLPRVE 116

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D + +++ + VL+ V +  NIGA+ RSA A   D ++ T           A+ + G +  
Sbjct: 117 DLLASARRVAVLEDVTNYTNIGAVFRSAAALGIDAVLVTPSCHDPLYRRAARVSMGTVFQ 176

Query: 187 IPYIRISN----LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKG 239
           +P+ RI +      + +  + S GF T  L+ SD    L  E      K+AL+LG EG G
Sbjct: 177 VPWTRIGSERAWAAEGVPLLRSLGFSTAALALSDEAIFLHDERLRGCDKLALVLGTEGDG 236

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L P T         + M   + +LNV+ A+AVA +  +
Sbjct: 237 LAPSTIANCDYTVKIPMDHDVDSLNVAAASAVAFWELR 274


>gi|262373126|ref|ZP_06066405.1| SpoU rRNA methylase [Acinetobacter junii SH205]
 gi|262313151|gb|EEY94236.1| SpoU rRNA methylase [Acinetobacter junii SH205]
          Length = 258

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 106/262 (40%), Gaps = 17/262 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   + L    RKIF L  T+ AL   + 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLSWLQQ-QRKIFSLFTTEQALDHPEL 66

Query: 84  DANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
              +     H F +  V  + +  + G       LA+   P  S T+D   +    ++L+
Sbjct: 67  QEIIEIHQGHIFIISEVLYKDLSTL-GTTLP--CLAIVDLPKTSQTIDFKAD---TLILE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +V DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L
Sbjct: 121 NVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSVNCFENFQLTDIL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K           SS     L  +        ILG EG+G+     E A     +  PG 
Sbjct: 181 PKFE---IPVFVTSSHRSTSLYSKDLTQACVWILGNEGQGVSDYALEHA-EAVTIPQPGG 236

Query: 260 IKALNVSNAAAVALYI--TQNH 279
            ++LNV+ A ++  +    Q  
Sbjct: 237 QESLNVAIAGSICFFEMVRQRQ 258


>gi|226323091|ref|ZP_03798609.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
 gi|225208281|gb|EEG90635.1| hypothetical protein COPCOM_00863 [Coprococcus comes ATCC 27758]
          Length = 288

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 108/270 (40%), Gaps = 24/270 (8%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +  Y + +  N   +   +           +  AL+     +  +L  K  +   +  + 
Sbjct: 18  YARYTEARLLN---KDHPEEGMFIAESPKVIGRALDAGYEPL-SVLVEKKQMEENEETSQ 73

Query: 87  LPH-----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           + +        + T   + + K+ G +     L       L    D       + +L++V
Sbjct: 74  IMNRFDDTKVSIFTADFEVLTKLTGFKLTRGMLCAMRRKPLRKFQDLCDGINRIAILENV 133

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN------- 194
            +P N+GAI RSA A + + ++ +   S       ++ + G +  IP+  I +       
Sbjct: 134 QNPTNVGAIFRSAAALNMEAVLLSPGCSDPLYRRASRVSMGTVFQIPWTFIRDSNEMRCK 193

Query: 195 -----LTDALQKMHSWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQE 246
                   A+ ++   G++T  L+  D    ++    +K +K+A+ILG EG+GL  +T  
Sbjct: 194 REVIWPKQAIAELKKLGYKTAALALTDDSVSIDDSELMKEEKLAVILGNEGEGLENETIA 253

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  + M   + +LNV+ A+AVA +  
Sbjct: 254 LCDYTVKIPMTHGVDSLNVAAASAVAFWQL 283


>gi|219685096|ref|ZP_03539916.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
           Far04]
 gi|219673192|gb|EED30211.1| RNA methyltransferase, TrmH family, group 3 [Borrelia garinii
           Far04]
          Length = 246

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 113/241 (46%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKIKEIERLAKTQNIKIIRISINELDKIL-KSKDHRG 63

Query: 114 LALETA-----------PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+                   L+  +  +   +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNEKTQTKDFENLLETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++TT++ S  ++  + +++SGA +++  I ++N+ + +  +   GF         +   
Sbjct: 124 LVVTTQKRSAKDNLTVLRTSSGASQYVKKITVTNINNTIYSLKKHGFWIYAGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG EGKG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNEGKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|118384277|ref|XP_001025291.1| RNA methyltransferase, TrmH family protein [Tetrahymena
           thermophila]
 gi|89307058|gb|EAS05046.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
           SB210]
          Length = 293

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 111/244 (45%), Gaps = 21/244 (8%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARL------DWDANLPHPFPVKTVPPQTIDK 103
           F+YG++    AL++  R I +++  ++  + L        +       PVK V  + +D+
Sbjct: 37  FVYGLNPTMIALHSNKRNIVEVIINQHVQSHLPPKISNIINTANAKKIPVKFVDREKLDR 96

Query: 104 IVGKEAVHQGLALETAPLLSPTLD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +V +   HQ + ++  PL         +    +++ LD + DP N GAI+R+      D 
Sbjct: 97  LV-QNQPHQNVVIKAEPLKYLRTKSSDILQGNMILFLDRITDPQNFGAIIRTCQYLGVDN 155

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPL 220
           ++  +      +  ++K++SGALE +      +  + L+     G++        S+  +
Sbjct: 156 VVVDEFSRCPLNPTVSKTSSGALEVMDIYCTPDPVEFLKDCQLRGWKVYSTGLNHSENQI 215

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHL--------HM---PGIIKALNVSNAA 269
             E   DKI L++G EG G+ PK  + +  +  +         M     +I +LNV++A 
Sbjct: 216 SLEKLKDKIVLVMGNEGNGVDPKILKVSDKIVSIDQTLYLNRPMVFPYTLIDSLNVNSAT 275

Query: 270 AVAL 273
           ++ +
Sbjct: 276 SILI 279


>gi|16330947|ref|NP_441675.1| rRNA methylase [Synechocystis sp. PCC 6803]
 gi|3915481|sp|P74261|Y1673_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr1673
 gi|1653441|dbj|BAA18355.1| rRNA methylase [Synechocystis sp. PCC 6803]
          Length = 274

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 20/272 (7%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK---- 67
           I S ++    +LR+ H           +++   Q   L L G H +  AL          
Sbjct: 11  ITSTQNPLVKQLRQLH-----------QTKGRKQQGQLLLEGTHLLEVALAQGKGFNHGC 59

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
              +   KN    +  D  +        V  + + K+        G+   T  +      
Sbjct: 60  FTAMWQEKN---PVLADRLMAQSVHSYLVSGEVLAKMAST-VNPDGVVA-TLTMDQFWRS 114

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +++L +VL+ + DP N+G ILR+A A   +GI  T       S  + +S++G+   +
Sbjct: 115 PPPHARLGLVLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSPKVLRSSAGSSLLL 174

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  ++ +L   L+K H+ G Q I     + + L +        +I G+EG+GL     E 
Sbjct: 175 PQQQLQSLPPLLEKFHTQGLQLIATVPQATQTLWEIDFQRPTIVIFGSEGQGLSAPVLEL 234

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            T    +     +++LNV+ A  V LY  +  
Sbjct: 235 TTHQVAIPQAPQVESLNVAIAVGVMLYEARRQ 266


>gi|226941122|ref|YP_002796196.1| tRNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226716049|gb|ACO75187.1| Probable tRNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 257

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 12/254 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH- 89
           K +     +     +   L L G+H V A L    R + QL   ++ALA  +  A L   
Sbjct: 13  KSLVRLASRPAERRKSGLLVLEGLHLVDAWLARQPR-LDQLFVREDALAHPEVTALLARL 71

Query: 90  --PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV  VP   + K     +  + +AL   P+ +P      +   +++LD V DP N+
Sbjct: 72  SADTPVAVVPAALLGKASELASPAEVIALAPIPVPAPY-----HGGSVLLLDDVQDPGNL 126

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G +LR+A A     +  +   +   S    ++  GA   +     + L   LQ       
Sbjct: 127 GTLLRTAAAADVRRVYLSAGCADVWSGKALRAGMGAQFALDLHERAVLPAVLQAFSGRK- 185

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +    +   PL        +A + G EG G+     + A     + MPG+ ++LNV+ 
Sbjct: 186 --VVTHLEGSVPLWSLDLTGDVAFVFGNEGAGVSAAVLDCAPDRVIIPMPGVAESLNVAA 243

Query: 268 AAAVALYITQNHFA 281
           AAA+ L+      +
Sbjct: 244 AAAICLFERVRQRS 257


>gi|227541536|ref|ZP_03971585.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182692|gb|EEI63664.1| TrmH family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 436

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 8/253 (3%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFP 92
           +  ++S    + +   + G ++V AA+   +     +  TK+A AR      A       
Sbjct: 115 AKLKRSAVRKKEKRFLVEGENSVEAAVATGAAT--DIFLTKSAAARFTDIVAAAKAMGMY 172

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAIL 151
           V  +  +   K +       G+      +L    D +     L+ V    N+P N G ++
Sbjct: 173 VHFID-EKAAKSLQDTVTSTGIFAVCREVLWSARDVLNGRPKLVSVPVETNEPGNAGTLI 231

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A A   D ++        +S   A+S++G+L HIP  R  N+   +  +   G     
Sbjct: 232 RVADAMGADCVLFAGDTVDPQSGKAARSSAGSLFHIPVARERNIMKVVSMLRERGLAIAA 291

Query: 212 LSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            ++D +  L    ++ +   A + G E  GL  + Q  A     + + G  ++LN++ AA
Sbjct: 292 TAADGEVDLTDAEDLLSQPTAWLFGNEAHGLPEELQAQADYRVRIPIRGRAESLNLATAA 351

Query: 270 AVALYITQNHFAK 282
           ++ L+ +  + AK
Sbjct: 352 SICLFESSKYQAK 364


>gi|28211878|ref|NP_782822.1| 23S rRNA methyltransferase [Clostridium tetani E88]
 gi|28204320|gb|AAO36759.1| 23S rRNA methyltransferase [Clostridium tetani E88]
          Length = 260

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 111/285 (38%), Gaps = 28/285 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN I+ K +  +  ++     K                      + +   + G   V  A
Sbjct: 1   MNTITSKDNNLVKFVRKLRDKKH-------------------RKKEKKFIVEGFRFVEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALET 118
           L +    I  +L  + +L ++             V  +   + + I G E   QG+    
Sbjct: 42  LKSDY-CIEYILINEKSLNKVQEFNINIEVIENKVYILNESSFNSISGTE-NSQGILAIV 99

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                  +  ++   L ++ D V DP N+G I+R+A A +  GI+ T+      +    +
Sbjct: 100 ---NMKEVLKLKEDGLYILADRVQDPGNMGTIIRTAHAANASGILITEGTVDVYNEKTLR 156

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEG 237
           S+ G++ +IP I    L D ++ +   GF+ +  S D+ K L       K + L +G EG
Sbjct: 157 SSMGSIFYIPVIEDFKL-DKIKDLKLKGFKVLASSLDTNKSLYDLDLCKKNLILAVGNEG 215

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            G+  +    +     + MPG  ++LN   A ++ ++       K
Sbjct: 216 SGVSEEVYNISDETFIIPMPGNAESLNAGVATSIIIFEIVRQNLK 260


>gi|251771304|gb|EES51885.1| TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
           ferrodiazotrophum]
          Length = 259

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/251 (25%), Positives = 104/251 (41%), Gaps = 30/251 (11%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNA--------LARLDWDANLPHPFPVKTVPPQTIDKI 104
           G H V   L+     +  L   ++           R           PV  +P   ID +
Sbjct: 3   GFHPVMEVLSLRPDSVVHLYLREDRHGESRMDGRRREIIRVARSRGIPVDFLPGPAIDGL 62

Query: 105 VGKEAV--------------HQGLALETA-----PLLSPTLDAVRN--SQLLMVLDHVND 143
             +  V              HQG+          P L   L+A        L+ +D V D
Sbjct: 63  FHRGQVSATASGGTGKGLPSHQGVVARIEEVATFPNLDDFLEASPGIAPSPLVAVDGVQD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LR+  A    G++  +R     S  +AK+++GAL  +P +RI NL+ +L+++ 
Sbjct: 123 PRNLGALLRTCDAAGVGGVLIPRRRVAPLSQTVAKTSAGALFTLPLVRIGNLSGSLRQLK 182

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+    L        E  +    + L++GAE KG+     + A     L M G +++L
Sbjct: 183 KEGYAIAALDLSGDPLPEGPLPGP-LVLVVGAEEKGVTRPVLDLADWRFRLPMKGKVQSL 241

Query: 264 NVSNAAAVALY 274
           N+S AA + LY
Sbjct: 242 NLSVAAGIFLY 252


>gi|254446077|ref|ZP_05059553.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198260385|gb|EDY84693.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 273

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 110/280 (39%), Gaps = 23/280 (8%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSR 66
           ++E I SL++     L               + R     + LF+  G   +S AL     
Sbjct: 3   EAELISSLQNPRVKNL------------VKLRDRRPRNQQGLFIAEGYRAISRALEKDVV 50

Query: 67  KIFQLLATKNALARLDWDANLPHPF----PVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
              ++    +     + DA L         +  +     +K+  ++   +GL        
Sbjct: 51  P-TEIYFCPDCFLGDNEDALLAQAQAAGATLFELSKHAFEKVAYRDR-PEGLLAVIK-QW 107

Query: 123 SPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           + TLD ++  +   L++++ +  P N+G ILRSA A   D +I     +   +    +S+
Sbjct: 108 NHTLDDLQLSDPPFLLIVEAIEKPGNLGTILRSADAAGVDAVICCDSVTDLFNPNAVRSS 167

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +G L  +P +  S+  + ++ +   G +TI  +  +            +A+++G+E  GL
Sbjct: 168 TGVLFSMPTVTASS-DEVIKWIRQKGIRTIATTPHTDILYTDTDLRGPLAIVMGSEQFGL 226

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             K      +   + M G   +LNV+ A  + L+      
Sbjct: 227 SEKWLSACDTKVLIPMAGQADSLNVAMATLITLFEAVRQR 266


>gi|291456687|ref|ZP_06596077.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
 gi|291381964|gb|EFE89482.1| tRNA/rRNA methyltransferase [Bifidobacterium breve DSM 20213]
          Length = 292

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 105/277 (37%), Gaps = 30/277 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-----D 84
           Y  +     ++R               +  AL      +  LL  +  L  +       D
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAAGREPL-SLLVEEPWLEGMTETFDFID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV    P+ + ++ G       L       L    +  ++++ + V++++ D 
Sbjct: 76  DRWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKDARRVAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS----------- 193
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+           
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGRNEDGTENKH 195

Query: 194 -NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGL 240
                 + ++ S GF T+ ++ + +     E+              +K+ALI G EG GL
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIEKLALIFGTEGDGL 255

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 256 SHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|47213835|emb|CAG00639.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 364

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 125/305 (40%), Gaps = 27/305 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN-LFLYGVHTVSA 59
           + +    + +K  S       KL       +K Q   QK++  S+ ++   ++G+     
Sbjct: 60  VQIPGFNQKKKNGSKVSLELRKLSLEDSPREKWQQLRQKTKVDSRSDSHEIVFGIAPCLL 119

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           AL+   RK F+L       A       +          +  V    +DK+     VHQG+
Sbjct: 120 ALSQGRRKAFKLFVKDGEAAERASVLKVCEEAHSRGVQICHVRKNDLDKM-SLGRVHQGV 178

Query: 115 ALETAPLLSPTLDAVR--------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            L+ + L   T                L +VL+ + DP N+GAILRSA     D + ++ 
Sbjct: 179 CLQASRLDFLTKTTCNSRGSKDSNRPPLWLVLEEIQDPMNLGAILRSAYFLGVDRVASSV 238

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT---IGLSSDSKKP---- 219
             S   S V++K++SG +E +      +L D L+   + G+Q    +G  +++       
Sbjct: 239 HRSCPLSPVVSKASSGVMEVMEVYGYESLEDMLRMKVAQGWQVVGSVGTEAEATHIPIIR 298

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALY- 274
                      L++G EG+GL         ++  +     +   I++LNVS AA + L+ 
Sbjct: 299 CSDFHLTKPTLLLMGGEGEGLSRGLLSLCQALLSIPAGRNLFPGIESLNVSVAAGIILHS 358

Query: 275 ITQNH 279
           + Q+ 
Sbjct: 359 MLQSR 363


>gi|294628391|ref|ZP_06706951.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
 gi|292831724|gb|EFF90073.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
          Length = 272

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 7/240 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  AL+        LL+ K      D    L 
Sbjct: 17  DYTDLTDVELRRRREPAEGLFIAEGEKVIRRALDAGYTARSMLLSAKWVEPLRDVIDGL- 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              PV    P   +++ G   VH+G LA      L    D +R ++ + V++ VND  NI
Sbjct: 76  -TAPVYVAAPDIAEQVTGYH-VHRGALAAMQRKPLPAAADVLRTARRVAVMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ + + GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDRWPGDLEPVRAAGF 193

Query: 208 QTIGLSSDS-KKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             + L+     KPL++   +  D++AL+LGAEG GL  +    A     + M   I +LN
Sbjct: 194 TLLALTPHERAKPLDEVAPHRMDRVALLLGAEGTGLSQRALSAADEWVRIPMSHGIDSLN 253


>gi|255066800|ref|ZP_05318655.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
 gi|255048875|gb|EET44339.1| RNA methyltransferase, TrmH family [Neisseria sicca ATCC 29256]
          Length = 263

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 98/287 (34%), Gaps = 36/287 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +S+   +     L GVH +   
Sbjct: 4   MKLITSAQNEQL------------------KHLSKLLTQSKARREYGQTVLEGVHLLQVY 45

Query: 61  LNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L      ++++ L  +KN    +    +      +  V  + + KI           L  
Sbjct: 46  LEAGYTPKQVY-LPESKNTHPEIRNLISSLDEDGITWVGNEALSKITS---------LND 95

Query: 119 APLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           A  +   ++      L      +VLD + DP N+G +LRSA A     I+         S
Sbjct: 96  ADDVMTWIEIPPQGDLPLSGDCVVLDRLQDPGNVGTVLRSAAASGIRQIVLGNDCVDIWS 155

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             + ++  GA   +       L   L            L   +   L Q   N   A + 
Sbjct: 156 PKVLRAGMGAHFLLDIYSRVFLPHWLDAYQDK-IWATALDGRNPSDLYQLDLNAPCAWVF 214

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G EG G+  +  E       + M G  ++LNV+ AA V L+      
Sbjct: 215 GNEGSGVSREILEKVDGSVRIPMLGQTESLNVAMAATVCLFEQMRQR 261


>gi|146299980|ref|YP_001194571.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146154398|gb|ABQ05252.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 262

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 102/256 (39%), Gaps = 2/256 (0%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +    +K++   Q     + G   +S A+     +I  +L   + +     + 
Sbjct: 8   QNPFIKSLALLQEKAKARKQTGTFLIEGQREISLAIK-GGYEIETVLFLPDLVTENQINK 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     +  +  +   K+  ++     LA+     L  +   + ++ L++V + +  P 
Sbjct: 67  LVGSSVQLIEINKEVYQKLAYRDTTEGILAVAKTKSLKLSDLKLSDNPLILVAESLEKPG 126

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+LR+A A + D ++     S   +  + +S+ G L        +   + +  +   
Sbjct: 127 NVGAVLRTADAANLDAVLIADPKSDLYNPNIVRSSVGCLFTNQIATGT-TEEIIAFLKEK 185

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                  +  +      +      AL++G E  GL  K ++ AT    + M G I ++NV
Sbjct: 186 NISFYSATLQNSTSYHTQNFTAPTALVVGTEATGLSQKWRDEATQNIIIPMQGEIDSMNV 245

Query: 266 SNAAAVALYITQNHFA 281
           S AAA+ ++  +    
Sbjct: 246 SVAAAILIFEAKRQRG 261


>gi|167586870|ref|ZP_02379258.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia ubonensis Bu]
          Length = 260

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 102/261 (39%), Gaps = 9/261 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL   + 
Sbjct: 6   SRDNPLYKRLKALAGSTSHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALRHDEA 64

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +      + V  P  +   +       G  L       P    V  +   +VLD V 
Sbjct: 65  QAIVARIDAHRLVTLPDALFGQLSNVVNGVGFLLLVDRPSHPLPARVTGTS--VVLDGVQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +      + + S+ + +S  GA   +            +++
Sbjct: 123 DAGNVGSILRSAAAAGVKHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDIEAGALAERI 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G       S   + +        +  + G EG G+    ++ AT    +  PG +++
Sbjct: 183 ---GVPVALTDSHGAQAIYDCDLAGPVVWVFGNEGAGVSAFWRDAATHRVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYI--TQNHFA 281
           LNV+ AAAV L+    Q   A
Sbjct: 240 LNVAAAAAVCLFEQVRQQRRA 260


>gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
 gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
          Length = 260

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 101/260 (38%), Gaps = 12/260 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K+++     +R   +     L G H ++A +         + A   +   +  
Sbjct: 8   SRDNSLFKQLKKLADNARERRKHNETLLDGPHLLTAYIERFGMPKLLVTAEGESTNEVVG 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +    P          ++    A   G+         P  +       L++L+ + D
Sbjct: 68  LLQVLADVPTVMFTTLMFAEL-SPVATPTGILALVDIPQQPVPE---QPDFLLMLEDIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G++LRSA A   + +  +   + + S    +   GA   +P +  ++L +      
Sbjct: 124 PGNLGSMLRSAAAAGVEVVYLSLGCADAWSPKALRGGQGAQFILPIVERADLENV----- 178

Query: 204 SWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + GF  QT+  +   +  L +       A ++G EG GL     + A+    + M G ++
Sbjct: 179 TRGFAGQTLATTLMGE-SLYEMDLQPPTAFMIGNEGTGLSETLIKAASRQVSIPMAGQVE 237

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN + A A+ L+      A
Sbjct: 238 SLNAAAATAICLFERSRQKA 257


>gi|254422310|ref|ZP_05036028.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196189799|gb|EDX84763.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 269

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 100/260 (38%), Gaps = 9/260 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-- 83
            ++  K+++ F Q+ +   +   L L G H + AA       +  L  T+    R     
Sbjct: 6   QNQTVKQLRKF-QQPKERRKQSVLLLEGTHLIEAACEVRY-PLQTLCYTEAWQVRHKRLC 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL---MVLDH 140
           +  +     V+ V P+ +  I        G             ++ R   ++   ++L+ 
Sbjct: 64  EEAIAQSHQVELVSPEVLKSIAST-ITPDGAIAIAPRRNVWKAESGRPKDMVSLGVILET 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G I+R++     DG+  +          + +++ G    +P   +  +  A  
Sbjct: 123 LQDPGNLGTIIRTSAGVGSDGLWLSHDSVDLGHPKVLRASVGQWFRMPMATVDVVEQA-S 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   G Q +  ++ ++    Q         ++G EG GL       A+    + +   +
Sbjct: 182 TLRQNGVQVVATTAAAELDYWQLDLQRPTVFLMGNEGAGLSDALMACASVTVKIPVAPEV 241

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ + A+ LY  +   
Sbjct: 242 ESLNVAISTALLLYEAKRQR 261


>gi|308177384|ref|YP_003916790.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744847|emb|CBT75819.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 277

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 117/269 (43%), Gaps = 10/269 (3%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I  + D   A+L     +Y ++   + + R   +           V  A+N       
Sbjct: 8   ERIMQVADLSDARLD----EYLRLSEAHLRMRTDVENGLYIAESTKVVQRAINAEHVPRS 63

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDA 128
            LLA K+ L +L  + N     P+     + ++ +VG   +H+G       P        
Sbjct: 64  FLLAEKH-LDQLVEEFNRFPDAPIFIGDDRQLEDLVGFH-LHRGAMASMNRPEPLDLSQV 121

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  S  + +L+ + D  N+GAI+RSA     D ++ T +         A+ + G +  +P
Sbjct: 122 LEASSRVAILEDIADHTNLGAIIRSASGLGVDAVLLTPKCVDPWYRRSARVSMGTVFDLP 181

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKIALILGAEGKGLRPKTQ 245
           ++R+ +  + ++ +   G+Q + +   D   PL   Q     K+A+ILG EG+G+  +  
Sbjct: 182 WVRMLSWPEDIRTLKQHGYQMLAMELTDDAIPLNEVQITAGQKVAMILGNEGRGVTAQAL 241

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E       + M   + +LNV  A+A+A +
Sbjct: 242 EAVDQTVIIPMHREVDSLNVGAASAIAFW 270


>gi|260171370|ref|ZP_05757782.1| putative SpoU-like rRNA methylase [Bacteroides sp. D2]
 gi|315919681|ref|ZP_07915921.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693556|gb|EFS30391.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 280

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 99/250 (39%), Gaps = 6/250 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +  ALN     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPDKGLFIAESPKVIHVALNAGYEPLALLCEQKHITGDAAGIIERCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L       L    +  R ++ ++V++ V D  NIG I R
Sbjct: 80  VYTGERKLLATLTGYTLTRGVLCAMRRRALPSVEEVCRKARRIVVIEGVVDATNIGTIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D I+ T+      +    + + G++  IP+  +        ++   GF+T+ +
Sbjct: 140 SAAALGIDAILLTRNSCDPLNRRAVRVSMGSVFLIPWTWLDGSP---YELRKLGFRTVAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  +    ++  I     K+A+++G EG GL+ +T   A  +  + M   + +LNV+ A+
Sbjct: 197 ALTEKSISIDNPILATEPKLAIVMGTEGDGLQNETINEADYVVRIPMANGVDSLNVAAAS 256

Query: 270 AVALYITQNH 279
           A+A +  +  
Sbjct: 257 AIAFWQLRVQ 266


>gi|21674700|ref|NP_662765.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647908|gb|AAM73107.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 263

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 9/247 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPH 89
           ++    QK +H          G+ TVS  L +      +  L+  + A  +LD       
Sbjct: 16  RLARLGQK-KHRDSEGLFLAEGLRTVSELLQSLSDPSMLHALVFDEKAAGQLDGLERFAG 74

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                   P    ++    +  QG+        S           ++ LD V DP N+G 
Sbjct: 75  KA--WLAGPNEFKRLAQTTS-PQGVVAAFRKPESGEFRPASARSFVVALDDVQDPGNVGT 131

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A  F  + +I  +  +   +A   +S++G++  +      +L   L+++ + GF  
Sbjct: 132 IIRTAAWFGAEAVICGRGTADPYNAKSVRSSAGSIFALAIDTTPDLAKTLRRLQADGFTV 191

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVS 266
              + D +          +  L++G E  G+  +    A     +   G    +++LN S
Sbjct: 192 AASALDGQDYRFFAEWPARRVLVIGNEANGISAEILALADRRLLIPPAGARPAVESLNAS 251

Query: 267 NAAAVAL 273
            +A + +
Sbjct: 252 VSAGILM 258


>gi|240171957|ref|ZP_04750616.1| rRNA methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 275

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 102/255 (40%), Gaps = 8/255 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       +L T   LA L  D    
Sbjct: 21  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFTP-RAMLGTDRRLAELRDDLT-G 78

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147
              P      + + + VG     +G+    + L   T+   V  ++ ++VL+ VND  N+
Sbjct: 79  STAPYYRASAEVMARAVGFHLN-RGVLASASRLPELTVAQVVDGARTVVVLEGVNDHENL 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+I R+A     D ++     +        + + G    +PY R ++    L  +   GF
Sbjct: 138 GSIFRNAAGLGVDAVVFGSGCADPLYRRAVRVSMGHALLVPYARAADWPADLLMLQQLGF 197

Query: 208 QTIGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + + ++              ++   IAL++GAEG GL       +     + M     +L
Sbjct: 198 RLLAMTPHGDARELGEAMDAVREQPIALLVGAEGPGLTAAALRISDLRVRIPMSRGTDSL 257

Query: 264 NVSNAAAVALYITQN 278
           NV+ AAA+A Y    
Sbjct: 258 NVATAAALAFYERAR 272


>gi|312868274|ref|ZP_07728474.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
           F0405]
 gi|311096019|gb|EFQ54263.1| RNA methyltransferase, TrmH family [Streptococcus parasanguinis
           F0405]
          Length = 181

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 87/184 (47%), Gaps = 5/184 (2%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           + P+ +  ++      QG+  E A       D ++     + L+ V DP N+G ++R+A 
Sbjct: 1   MTPEILS-LLADSKTPQGIVAEIALEQPELPDQLQGR--FLYLEDVQDPGNVGTMIRTAD 57

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-S 214
           A   DG++ +K  +   S    +S  G+  HIP  ++    + L++        +  + S
Sbjct: 58  AAGFDGVMLSKASADLYSLKTLRSMQGSHFHIPIWKLDR-EELLERATQSHLAVLATTLS 116

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++     Q  + D+  L++G EG G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 117 EASIDYRQLPQTDRFILVMGNEGNGISQEMAAQADQLVHIPMPGRAESLNVAVAAGILMF 176

Query: 275 ITQN 278
             + 
Sbjct: 177 SLRK 180


>gi|300858366|ref|YP_003783349.1| hypothetical protein cpfrc_00948 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685820|gb|ADK28742.1| hypothetical protein cpfrc_00948 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330634|gb|ADL20828.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308276319|gb|ADO26218.1| putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           I19]
          Length = 285

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 103/253 (40%), Gaps = 13/253 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++    + +     G ++V AA++  +     +  T+ A  +            +   P 
Sbjct: 35  RTAGRKKADRFLAEGENSVEAAVSTGAAT--DVFVTETAAQKFVDVITAAKHMGIYVHPI 92

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156
                K +       G+     P+L     A++   +L+ V    ++P N G ++R A A
Sbjct: 93  TDRAAKSLSDTVNTTGIFAVCRPVLWDIKSALKGQPRLVCVPVETSEPGNAGTLIRVADA 152

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II        +     +S++G+L HIP +R  NL      + + G + +  ++  
Sbjct: 153 MGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRVWDSLKARGLKILATTAQG 212

Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+   ++ +   A ++G E  GL     E A     + + G  ++LN++ AA+V LY
Sbjct: 213 EISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADHRVCIPIRGRAESLNLATAASVCLY 272

Query: 275 IT-------QNHF 280
            +       QNH 
Sbjct: 273 ESSKTLLSDQNHL 285


>gi|283455940|ref|YP_003360504.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|283102574|gb|ADB09680.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
          Length = 288

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 111/271 (40%), Gaps = 24/271 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR--LDWD 84
           Y  +     ++R               +  AL +    I  LL  +   + ++R  +  D
Sbjct: 17  YTNLTEIQLRNRLEPSKGLFIAESPKVIDRALASGREPI-SLLVEEPWIDGMSRTFVCID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +     PV    P+ + ++ G       LA      L    +  R ++ + V++++ D 
Sbjct: 76  EHWGGDIPVYVASPEQLKRLTGYRLHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS------NLTDA 198
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI            
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTG 195

Query: 199 LQKMHSWGFQTIGLSS-DSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQE 246
           ++++H  GF T+ ++  D    L++ ++            D++ALI G EG GL   T  
Sbjct: 196 MRELHDLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTIS 255

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M   + +LNV+ ++AVA Y T 
Sbjct: 256 RADLTVKIPMSHGVDSLNVAASSAVAFYSTA 286


>gi|319408924|emb|CBI82581.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           schoenbuchensis R1]
          Length = 271

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 119/275 (43%), Gaps = 19/275 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I ++ ++   +L   +R+ ++     ++             G   +SA L++       L
Sbjct: 5   ITTIHETDDPRL-EAYRNIREKDLVGRQ-------HQFIAEGKVVLSALLHSKDFSALSL 56

Query: 72  LATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTL 126
           L     L  +        P  P+  VP + +D I G   VH+G+      +T P L   L
Sbjct: 57  LIVAARLLGIMPILKATKPTCPIYCVPQKVMDDIAGFH-VHRGMLGIGERKTLPSLQDFL 115

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +    L+ VL  +++  N+GAI R+A AF+  GII  K           + + GA   
Sbjct: 116 QNLPEKTLVPVLCGISNHDNMGAIFRNAAAFASHGIIVDKTSCDPLYRKAIRVSVGAALK 175

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           IPY + +++   ++ ++   F    LS  + + L++     + A+ILGAEG GL     +
Sbjct: 176 IPYTQGADIDSIIEALNDADFHLYALSPSAPRYLKEAKSTKRTAIILGAEGDGLPAHILQ 235

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +     + M     +LNV+ A+ +AL     HFA
Sbjct: 236 KS-ETLRIPMAYGFDSLNVATASGIAL----AHFA 265


>gi|225351944|ref|ZP_03742967.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157191|gb|EEG70530.1| hypothetical protein BIFPSEUDO_03548 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 288

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 113/276 (40%), Gaps = 30/276 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-------NALARLD 82
           Y  +     +++               +  AL      I  LL  +          AR+D
Sbjct: 17  YTNLTEIQLRNKLEPSKGLFIAESPKVIDRALTADREPI-SLLVEEPWIGGMSETFARID 75

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHV 141
                    PV    P+ + ++ G   +H+G          P+++ V R ++ + V++++
Sbjct: 76  Q--RWGTDIPVYVASPEQLKQLTGYR-LHRGALAAMKRWPLPSVEEVCRGARRIAVMENI 132

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS------NL 195
            D  N+GA++RSA A + D ++ T           A+ + G +  IP+ RI         
Sbjct: 133 VDHTNVGALMRSAAALNVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWP 192

Query: 196 TDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN-----------DKIALILGAEGKGLRPK 243
              +Q++   GF T+ ++  D    LE+ ++            DK+ALI G EG GL   
Sbjct: 193 FTGMQELRDLGFTTVAMALEDDSISLEELVRRLNNDNGEKDHIDKLALIFGTEGDGLSHH 252

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           T   A     + M   + +LNV+ ++AVA Y T  H
Sbjct: 253 TISRADLTVKIPMSHGVDSLNVAASSAVAFYSTAVH 288


>gi|160913562|ref|ZP_02076253.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
 gi|158434114|gb|EDP12403.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
          Length = 244

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 104/241 (43%), Gaps = 23/241 (9%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H +  A+   ++ +  +L  +       +D      +P   V    +
Sbjct: 23  YRDSDRCFLVEGEHLLEEAIR--AKLLDCILVEEG----HTYDTGA---YPCYEVSSMIM 73

Query: 102 ----DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               D + G   +  G+     P+     +       +++LD V DP N+G ILRSA +F
Sbjct: 74  RKLSDSVSGTWLI--GVCHMPCPMDFVMGEK------VILLDDVQDPGNVGTILRSAYSF 125

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++ +K  +   S  + +S  GAL H+  IR ++L+  + ++       IG + ++ 
Sbjct: 126 GFDTVVLSKHCADVYSDKVIRSTQGALFHMQVIR-TDLSQIIDQLKEKKIPVIGTALENA 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +      D++AL+ G EG G+  +         ++ M    ++LNV+ AA +A+Y  +
Sbjct: 185 SAMSTIEAVDRVALLFGNEGNGVSKELLAKCDETMYIEM-HAFESLNVAVAAGIAMYKFR 243

Query: 278 N 278
            
Sbjct: 244 R 244


>gi|308812149|ref|XP_003083382.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
 gi|116055262|emb|CAL57658.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
          Length = 320

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 113/279 (40%), Gaps = 22/279 (7%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF---LYGVHTVSAALNNPSRKIFQLLAT 74
           +  A+ R     Y +     ++    +  E L    +YG + V  AL    R +F L   
Sbjct: 38  AEDARRRGTATRYDRRAIRRERGDGPTIAEGLIGEMVYGTNPVLEALRQNRRTLFALYVQ 97

Query: 75  KNALARLDWDANLPH-----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                     + +          VK+     ++ +      HQG+ L+   L  PT++ +
Sbjct: 98  TGEGGGGHGTSEILRLAKELKVEVKSASKHDLN-MACDNKPHQGVLLDAEALEIPTVEEL 156

Query: 130 RN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     + + LD V DP N+GA+LRSA     DGI+   + S   +A ++K+++GA
Sbjct: 157 PRWNGVGSPPVWLALDEVVDPQNLGAMLRSAHFLGVDGIVVCTKNSAPFNATVSKASAGA 216

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRP 242
           +E     R   +   L +    G+  +G ++D   + +          L++G EG G+R 
Sbjct: 217 MEAQVVHRTGVMHRFLARARDDGWDVVGAAADPRAENIHAFEVAAPTVLVVGNEGVGIRT 276

Query: 243 KTQETATSMAHLHMPG-----IIKALNVSNAAAVALYIT 276
             +     +  +   G      + +LNVS AA + ++  
Sbjct: 277 NVRRACNRLVSIP-RGVSATDGVDSLNVSVAAGILIHAL 314


>gi|31792069|ref|NP_854562.1| rRNA methyltransferase [Mycobacterium bovis AF2122/97]
 gi|121636804|ref|YP_977027.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215402681|ref|ZP_03414862.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
           02_1987]
 gi|215410467|ref|ZP_03419275.1| putative rRNA methyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426147|ref|ZP_03424066.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|215429738|ref|ZP_03427657.1| putative rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215445022|ref|ZP_03431774.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|218752546|ref|ZP_03531342.1| putative rRNA methyltransferase [Mycobacterium tuberculosis GM
           1503]
 gi|219556746|ref|ZP_03535822.1| putative rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|224989275|ref|YP_002643962.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800097|ref|YP_003033098.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|254231189|ref|ZP_04924516.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
 gi|254363812|ref|ZP_04979858.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549858|ref|ZP_05140305.1| rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185777|ref|ZP_05763251.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|260199901|ref|ZP_05767392.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|260204083|ref|ZP_05771574.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289442291|ref|ZP_06432035.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289446446|ref|ZP_06436190.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289555338|ref|ZP_06444548.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289568845|ref|ZP_06449072.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289573507|ref|ZP_06453734.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289744611|ref|ZP_06503989.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289749403|ref|ZP_06508781.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289752936|ref|ZP_06512314.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
 gi|289756966|ref|ZP_06516344.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289761012|ref|ZP_06520390.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
 gi|294996361|ref|ZP_06802052.1| rRNA methyltransferase [Mycobacterium tuberculosis 210]
 gi|297633398|ref|ZP_06951178.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
 gi|297730383|ref|ZP_06959501.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN R506]
 gi|298524373|ref|ZP_07011782.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306792256|ref|ZP_07430558.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|313657710|ref|ZP_07814590.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN V2475]
 gi|38258679|sp|P59968|Y905_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb0905
 gi|31617656|emb|CAD93766.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
           bovis AF2122/97]
 gi|121492451|emb|CAL70919.1| Possible rRNA methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124600248|gb|EAY59258.1| hypothetical protein TBCG_00871 [Mycobacterium tuberculosis C]
 gi|134149326|gb|EBA41371.1| rRNA methyltransferase spoU [Mycobacterium tuberculosis str.
           Haarlem]
 gi|224772388|dbj|BAH25194.1| putative rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321600|gb|ACT26203.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|289415210|gb|EFD12450.1| rRNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289419404|gb|EFD16605.1| rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289439970|gb|EFD22463.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289537938|gb|EFD42516.1| rRNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289542599|gb|EFD46247.1| rRNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289685139|gb|EFD52627.1| rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289689990|gb|EFD57419.1| rRNA methyltransferase [Mycobacterium tuberculosis T92]
 gi|289693523|gb|EFD60952.1| rRNA methylase [Mycobacterium tuberculosis EAS054]
 gi|289708518|gb|EFD72534.1| rRNA methylase [Mycobacterium tuberculosis GM 1503]
 gi|289712530|gb|EFD76542.1| rRNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|298494167|gb|EFI29461.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308339179|gb|EFP28030.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|323720590|gb|EGB29668.1| rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|326904900|gb|EGE51833.1| rRNA methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328459835|gb|AEB05258.1| rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 288

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    +    +   GV  V   L +    +  L  T   LA L  D    
Sbjct: 28  DFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-G 85

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + +++G       LA             V  ++ + VL+ VND  N+G
Sbjct: 86  VGAPYYRASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLG 145

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A   S D ++     +        + + G    +PY R ++    L  +   GF+
Sbjct: 146 SIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFR 205

Query: 209 TIGLSSDSKKP-LEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++       L + I    +++IAL++GAEG GL       +     + M     +LN
Sbjct: 206 LLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLN 265

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 266 VATAAALAFYERTR 279


>gi|108801699|ref|YP_641896.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
 gi|119870850|ref|YP_940802.1| RNA methyltransferase [Mycobacterium sp. KMS]
 gi|123368666|sp|Q1B2P4|Y4736_MYCSS RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736
 gi|254803958|sp|A1UMF4|Y4822_MYCSK RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mkms_4822
 gi|108772118|gb|ABG10840.1| RNA methyltransferase TrmH, group 3 [Mycobacterium sp. MCS]
 gi|119696939|gb|ABL94012.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. KMS]
          Length = 314

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 107/261 (40%), Gaps = 37/261 (14%)

Query: 43  TSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPP 98
               E   + G + V   L    P+  ++  + T+ A  R+     +   +   +  VP 
Sbjct: 66  RKTDETELVLGRNPVVECLRAEVPATALYVAMGTE-ADERVTEAVQIAADNGISILEVPR 124

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
             +D++    A+HQGL L+  P      D +           LL+ LD+++DP N+GAI+
Sbjct: 125 SDLDRM-SNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGAIV 183

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RS  AF   G++  +R S S +AV  ++++GA   +P  R +NL   L+     G Q +G
Sbjct: 184 RSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVG 243

Query: 212 LSSDSKKPLEQEI------------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           L +D    L++                             L    +E   ++  + M G 
Sbjct: 244 LDADGDTTLDELDGTGPVVVVVGSEGKG------------LSRLVRENCDAVVSIPMAGP 291

Query: 260 IKALNVSNAAAVALYITQNHF 280
            ++LN S AA V L       
Sbjct: 292 TESLNASVAAGVVLAEIARQR 312


>gi|323464763|gb|ADX76916.1| RNA methyltransferase, TrmH family [Staphylococcus pseudintermedius
           ED99]
          Length = 248

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 13/236 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
              +     L G H +  A+ +   K+ QL   + +    +          V  +  +  
Sbjct: 23  ERDKQGLAILEGFHLIEEAVESQI-KVTQLFMIEPSRVPTELIEAAEE---VYEITQKVA 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + + G     QG+         P +D     Q +++LD + DP N+G ++R+A A   D 
Sbjct: 79  ETLSGT-VTPQGIFAII---EKPQVDVTAAKQ-VLILDRIQDPGNLGTMIRTADAAGLDL 133

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ TK  +      + +++ G++ HIP   + +++  +           G +        
Sbjct: 134 IVMTKGTADVYQDKVLRASQGSVFHIPIQYVDDMSAWMSSFKG---PIYGTALQDATTYH 190

Query: 222 QEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           Q     D  ALILG EG+G+        T    + + G  ++LNV+ AA V ++  
Sbjct: 191 QVASQQDTFALILGNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGVLMFYL 246


>gi|153831018|ref|ZP_01983685.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae
           623-39]
 gi|148873496|gb|EDL71631.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae
           623-39]
          Length = 203

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           N  +YG+H V+A L     +  +    K     RL    N  +     ++ +  + +D  
Sbjct: 3   NELIYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDK 62

Query: 105 VGKEAVHQGLALETAP---LLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             + A HQGL     P   L    LD +       LL+VLD V DPHN+GA LR+A A  
Sbjct: 63  A-EGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAG 121

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +I  K  S   +A ++K A GA E +P +R++NL   ++ +   G   +G + ++  
Sbjct: 122 VAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATH 181

Query: 219 PLEQEIKNDKIALILGAEGKGL 240
            + Q      +A+++GAEG G+
Sbjct: 182 DIYQSKLTGPLAIVMGAEGDGM 203


>gi|226331060|ref|ZP_03806578.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
 gi|225201855|gb|EEG84209.1| hypothetical protein PROPEN_04990 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 15/249 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVP 97
              + E   +YG +   A   N    I +    ++   R    L W A     + V  V 
Sbjct: 122 RRQRLEETRIYGENACQAMFKNRPDAIVRAWFLQDVTPRFRDALKWMAANRKAYHV--VE 179

Query: 98  PQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + K    +  H G+       +       L        ++ L+ V +PHN+GAI+RS
Sbjct: 180 EEEMVKAARTD-HHGGVCFLIKKRVGHDAETYLKDAPEHDCVLALEDVGNPHNVGAIMRS 238

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   G+I+    +  ES    ++A G  E+I  I   N    L K    G+  +  S
Sbjct: 239 CAHFGVKGVISPD-SAVLESGAAVRTAEGGAEYIQGIDADNFAQTLDKFKKAGYTLVATS 297

Query: 214 SD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S     PL +     K+ LILG E  GL   T        ++   G +++LNVS A+ V 
Sbjct: 298 SHKGSVPLSKAQLPAKMVLILGQEKDGLSESTLNQGDMSIYIGGTGHVESLNVSVASGVL 357

Query: 273 L--YITQNH 279
           L  +  Q+ 
Sbjct: 358 LAEWWRQHQ 366


>gi|306835998|ref|ZP_07468990.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304568164|gb|EFM43737.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 268

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 102/243 (41%), Gaps = 6/243 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++ +  + +   + G + V AA++  +     +  T+ A  R            V   P 
Sbjct: 24  RAANRKKAKQFIIEGENAVDAAVSTGAAT--DVFVTEKAAERFADIVTACGYMDVYVHPI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAV 155
                K +   A   G+    +     +   + N   +L+ V    ++P N G ++R++ 
Sbjct: 82  TDKAAKHLADTATTTGIFALCSSSALWSAGKILNGKPKLISVPVLTSEPGNAGTLIRTSD 141

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG+I          + +A++++G+L H+P  R  N+ D L ++   G Q +  ++D
Sbjct: 142 AMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQLRKSGMQIVATAAD 201

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  L         A + G E  GL  +  E A     + + G  ++LN++ AA++ LY 
Sbjct: 202 GEVELADADLTQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYE 260

Query: 276 TQN 278
           +  
Sbjct: 261 SAK 263


>gi|302206081|gb|ADL10423.1| Putative rRNA methyltransferase [Corynebacterium pseudotuberculosis
           C231]
          Length = 289

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 103/253 (40%), Gaps = 13/253 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++    + +     G ++V AA++  +     +  T+ A  +            +   P 
Sbjct: 39  RTAGRKKADRFLAEGENSVEAAVSTGAAT--DVFVTETAAQKFVDVITAAKHMGIYVHPI 96

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156
                K +       G+     P+L     A++   +L+ V    ++P N G ++R A A
Sbjct: 97  TDRAAKSLSDTVNTTGIFAVCRPVLWDIKSALKGQPRLVCVPVETSEPGNAGTLIRVADA 156

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D II        +     +S++G+L HIP +R  NL      + + G + +  ++  
Sbjct: 157 MGADCIIFAGNTVDPQGPKAVRSSAGSLFHIPVVREPNLQRVWDSLKARGLKILATTAQG 216

Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+   ++ +   A ++G E  GL     E A     + + G  ++LN++ AA+V LY
Sbjct: 217 EISLDNAGDVLSHPTAWLMGNEAHGLEESLMEKADHRVCIPIRGRAESLNLATAASVCLY 276

Query: 275 IT-------QNHF 280
            +       QNH 
Sbjct: 277 ESSKTLLSDQNHL 289


>gi|188533075|ref|YP_001906872.1| putative methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188028117|emb|CAO95974.1| Predicted tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 344

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 93/247 (37%), Gaps = 14/247 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVP 97
              + E   +YG H   A   +    I +       T      L W A     +   TV 
Sbjct: 101 RRQRMEETRVYGEHACQALFQSRPESIVRAWFVQSVTPRFRDALKWMAANRKAY--HTVD 158

Query: 98  PQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
              + K  G E  H G+       +    S  L        ++ L+ + +PHN+G I+RS
Sbjct: 159 DAELQKASGTE-HHGGVCFLIKKRVGMPVSEWLAQSGQKDCVLALEDIGNPHNLGGIMRS 217

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  S
Sbjct: 218 CAHFGAKGLLVDDA-SLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRKAGYTIVTTS 276

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           S    PL +     K+ L+LG E  GL   T E       +   G +++LNVS A  V L
Sbjct: 277 SHQGIPLAKAELPAKMVLVLGQERDGLSDSTLEQGDLSVSISGTGNVESLNVSVATGVLL 336

Query: 274 --YITQN 278
             +  QN
Sbjct: 337 AEWWRQN 343


>gi|73662967|ref|YP_301748.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72495482|dbj|BAE18803.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 246

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 107/274 (39%), Gaps = 32/274 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+  ++ KI                   K  +  +K R   +     + G H +  A
Sbjct: 1   MEIITSAQNNKI-------------------KNANKLKKKRERDKTGLALIEGYHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   KI QL          D  +     F +       + +++      QG       
Sbjct: 42  YKSKI-KIQQLYVVDADRIHDDMISYAEEVFEINL----KVAEVLSGTVTPQGFFAVIEK 96

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            +  +     N++ ++++D + DP N+G ++R+A A   D I+  K  +      + +++
Sbjct: 97  PIYES----NNAKQVLLIDCIQDPGNLGTLIRTADAAGLDLIVLEKGTADPYQDKVMRAS 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G++ HIP +  + L+  +           G + +      Q    +  AL+LG EG+G+
Sbjct: 153 QGSVFHIPIL-TTELSGFIADFEG---DVYGTALEDAVVYNQIPSQETFALLLGNEGEGV 208

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K     T    + + G  ++LNV+ A ++ +Y
Sbjct: 209 NDKLLSQTTQNLTIPIYGKAESLNVAIAGSIVMY 242


>gi|145354481|ref|XP_001421512.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581749|gb|ABO99805.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 318

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 98/249 (39%), Gaps = 23/249 (9%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLAT-----------KNALARLDWDANLPHPFPVKTV 96
              +YG + V  AL    R +F L                                VK  
Sbjct: 61  GEIVYGTNPVLEALRRNRRALFALYVQTGEGGAANGGKGAGAESEILRLAEARAVTVKRA 120

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAI 150
               ++ +      HQG+ L+   L  PTL+ +          + + LD + DP N+GA 
Sbjct: 121 SKHDLN-MACDNKPHQGVLLDAEALEIPTLEDLPKWDGRGEPPVWLALDEIVDPQNLGAA 179

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA     DG++   + S   +A ++K+++GA+E     +   +   L K    G+  +
Sbjct: 180 LRSAHFLGVDGVVCCAKNSAPFNATVSKASAGAMEAQVVHQTGVMHRFLAKARDEGWDVV 239

Query: 211 GLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNV 265
           G ++D+  + +          L++G EG GLR   +     +  +         + +LNV
Sbjct: 240 GAAADARAEDVSDFSVRAPTILVMGNEGSGLRTNVRRACNRLIEIPRSASSAAGVDSLNV 299

Query: 266 SNAAAVALY 274
           S AA + ++
Sbjct: 300 SVAAGILIH 308


>gi|320160779|ref|YP_004174003.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994632|dbj|BAJ63403.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 271

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 108/260 (41%), Gaps = 12/260 (4%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-----RL 81
           +   K+++   ++ +   +    FL G+  V+ A          L+ + + L      +L
Sbjct: 7   NEQVKRIRRLQER-KERERTGLFFLEGIRIVAEA-AERGEAFETLIVSPDRLQSDFAWKL 64

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDH 140
             +    +  P+  V     +++  KE   QG+A        P    +V N +  + LD 
Sbjct: 65  VENLRR-NGTPILEVSSLVFERLSQKEG-PQGIAAVVHQRWMPLGAVSVENGKPWVALDS 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G ILR+  A    G+I   + +        +++ GAL  +  +R ++      
Sbjct: 123 VADPGNLGTILRTLDAVGGAGVILLDQSTDPYDPSCVRASMGALFDLHLVR-TSFEQFRD 181

Query: 201 KMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +    G   IG S  +K+         ++ L++G+E  GL+P   E    +  + M G 
Sbjct: 182 WIKRQTGVALIGTSGAAKQDYHDFPYPSRLVLLMGSERLGLQPYHLELCDEVVRIPMVGR 241

Query: 260 IKALNVSNAAAVALYITQNH 279
             +LN++ A AV LY   N 
Sbjct: 242 SDSLNLAVATAVVLYEIFNQ 261


>gi|282890121|ref|ZP_06298652.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499972|gb|EFB42260.1| hypothetical protein pah_c013o022 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 277

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 102/262 (38%), Gaps = 17/262 (6%)

Query: 31  KKMQSFNQKSRH-TSQPENLFLYGVHTVSAALNNPS--RKIF---QLLATKNALARLDWD 84
           K  Q+   + RH   Q +   + G   +  A++       +F   +L    N  + +   
Sbjct: 17  KIKQAVKLRERHARKQTDLFLIEGYRELLRAVDAGRKMETLFFCPELYLGTNEASLIQKI 76

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVL 138
           A       +         K+  ++     +A   AP    +L+ +      +N+  L+V 
Sbjct: 77  A--KTGASLYQCTESVFKKLSYRDRPDGLIA--IAPQFHLSLEDLGKQLKNQNNPFLIVA 132

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + +  P N+G ILR + A   D +I     +   +  + +++ G L  +P I      + 
Sbjct: 133 EAIEKPGNLGTILRCSDAVGLDALIVCDACTDIHNPNVVRASVGTLFTVPVIESQG-AET 191

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           LQ +   G   +  +  +K+ L        +A+ +G E  GL P+  E A     + M G
Sbjct: 192 LQWLKQKGISILAATPHAKQELADIDLTGPLAIAVGTEQLGLSPQWMEQADIQVRIPMYG 251

Query: 259 IIKALNVSNAAAVALYITQNHF 280
           I  +LNV+ A  + LY      
Sbjct: 252 IADSLNVAMATTILLYEALRQR 273


>gi|328875034|gb|EGG23399.1| hypothetical protein DFA_05531 [Dictyostelium fasciculatum]
          Length = 487

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 22/223 (9%)

Query: 75  KNALARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---- 129
           KN  A  +          PV  V  Q +D    K  VH G+ ++ +PL + ++D +    
Sbjct: 267 KNVKAVKEIIKKCKELGVPVYPVKKQLLDT-FSKWNVHNGMVMDCSPLTAESIDKLQVIT 325

Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                  ++  L++ LD + DP N GAI+R+   F   G++TT ++S   + V +K+++G
Sbjct: 326 KEAMDKLKSPPLVVALDEIWDPQNTGAIIRTCHFFGVSGVVTTDKHSSPLTPVASKASAG 385

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLR 241
           ALE  P  +  ++   L+     G++ +G S  +  KPL          L++G EG G+ 
Sbjct: 386 ALEDTPIYKTMSMYGFLKGSKENGWKIMGTSLGEDSKPLNSVKLTQPTILVIGNEGFGVS 445

Query: 242 PKTQETATSMAHLHMPGII----KALNVSNAAAVALYITQNHF 280
               +       + +        ++LN S +A + +    NH 
Sbjct: 446 DNIIQECDETVKIPVSNKANPKLESLNASVSAGIVI----NHL 484


>gi|206577025|ref|YP_002237077.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
 gi|206566083|gb|ACI07859.1| RNA methyltransferase, TrmH family [Klebsiella pneumoniae 342]
          Length = 361

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           ++  +        ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAAEDDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++        ES    ++A G  E +  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVVQDAG-VLESGAAIRTAEGGAERVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
           +  PL +     K+ L+LG E  GL      ++     ++  G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLVLGQERDGLSDAAISSSDLSVAINGTGNVESLNVSVATGVLLAE 354

Query: 274 YITQN 278
           +  QN
Sbjct: 355 WWRQN 359


>gi|291520861|emb|CBK79154.1| rRNA methylases [Coprococcus catus GD/7]
          Length = 260

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 101/240 (42%), Gaps = 6/240 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+++    KS+   + +     G+  V+     P+ ++ ++  +++         
Sbjct: 6   SNPQMKRIKELLNKSKQRRKEKCFVAEGIRMVAE---TPADRLEKVYVSESFYRHPPELR 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDP 144
            L     +  V  Q   ++   +   QG+        +     ++    LL+ L+++ DP
Sbjct: 63  GLDLSKAL-IVDDQVFRQVSDTQ-TPQGIMAVVRQQENSLDAIMKQPDALLLFLENIQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+A      GII ++  +   +    ++  G+L  +P++ + +  + ++   +
Sbjct: 121 GNLGTMMRTAEGAGVTGIIMSRETTDIYNPKTIRATMGSLYRMPFVYVDDFCETIRMAKA 180

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G +        K   + E        ++G EG GL  +  ++AT    + M G +++LN
Sbjct: 181 QGIRLYAAHLKGKHTYDGEDYRQPSGFLIGNEGNGLTQEAADSATDYIRIPMGGQLESLN 240


>gi|242058639|ref|XP_002458465.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
 gi|241930440|gb|EES03585.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
          Length = 552

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/314 (24%), Positives = 132/314 (42%), Gaps = 60/314 (19%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLF------LYGVHTVSAALNNPSRKIFQLLATK-- 75
           + + R + K +++ +K+   +   ++       +YGV  V AAL    R+ + L   +  
Sbjct: 227 KPDVRQWNKQENWGRKTGKEAGESSVPNIVGQGVYGVGPVLAALMARRREFYALYIQESM 286

Query: 76  ----NALARLDWDA-----NLPHPFPVKTVPPQTID-KIVGKEAVHQGLALETAPLLS-- 123
               N   R D  A      +     +K +     D  +V     HQG+ L+ +PL    
Sbjct: 287 DLSGNNKKRKDKKAVEKVLRMAEEIGLKVIETSKHDLNMVVDNRPHQGVVLDASPLEMVN 346

Query: 124 -PTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              LD VR     + + + LD + DP N+GAI+RSA  F   G+I   + S   S V++K
Sbjct: 347 IKELDPVRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVILCAKNSAPLSGVVSK 406

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEG 237
           +++G+LE I  +   N+   L      G++ + G  ++   PL +        L++G+EG
Sbjct: 407 ASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVEIGVPTILVMGSEG 466

Query: 238 KGLRPKTQETATSMAHLHM--------------PGI----------------IKALNVSN 267
            GLRP  + + T +  +                 G                 +++LNVS 
Sbjct: 467 TGLRPLVERSCTHLVRIPGNVDVFVEGAGADADAGEEGDSSSSNQDLRSFLAVESLNVSV 526

Query: 268 AAAVALYITQNHFA 281
           AA V LY    H A
Sbjct: 527 AAGVLLY----HLA 536


>gi|326334333|ref|ZP_08200547.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693492|gb|EGD35417.1| 23S rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 261

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 103/256 (40%), Gaps = 4/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K + S  QKS+   +     + G   ++ A+      I QL      L++ + + 
Sbjct: 8   QNPLIKHLYSLTQKSKLRREQREFLIEGRRELTLAIEAGYL-IKQLFFCSAILSQEEVEK 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  +  +  +   K+  + +    LA  +T       L   + + L+++ +    P
Sbjct: 67  QFAGE-KLTEISMEIYQKLSYRSSTEGILALAQTKDHFLSELTFHKENPLILIAEAPEKP 125

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+LR+A A   D +      +   +  + +S+ G L  +P    ++  + L  +  
Sbjct: 126 GNIGALLRTADAAGVDAVCIANPKTDLYNPNVIRSSVGTLFTVPIA-TASTKEILSFLQK 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             F     +  +  P +      + A+++G E  GL P+    ++    + M G I ++N
Sbjct: 185 ENFTIYCAALSASVPYDSVSYRGRTAIVVGTEDVGLSPQWLSASSKNIIIPMRGKIDSMN 244

Query: 265 VSNAAAVALYITQNHF 280
           VS +AAV ++      
Sbjct: 245 VSTSAAVLIFEAVRQR 260


>gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 265

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 15/265 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALAR 80
            R +   K      ++ +   +     + GV  V  A+  P    + L+    T      
Sbjct: 4   SRRNALIKYASRLLER-KARDREGKFLVEGVRMVREAMKRPELVEYVLVACDVTGEMEEE 62

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              DA       V  + P+ + +I   E    G+       +        +  L++++D+
Sbjct: 63  FWRDAA-----SVYRIRPELVKEITDTE-NPSGIVAVCRKPVWDWESIPESDGLILIVDN 116

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISNLTDAL 199
           + DP N+G ILR+A A   D +   K      +  + +S+ GA+ H P   R+ N  D +
Sbjct: 117 LRDPGNLGTILRTAWAAGVDAVFLLKGTVDMYNPKVIRSSMGAVFHFPVFERVGN--DEV 174

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +++   G++ +     +            +A+++G E  G+    +E   S   + +   
Sbjct: 175 RELCHRGYRLVVADPKASLVFTDADYYGNVAVVIGGETAGISAVFEELPASRVRIPLREG 234

Query: 260 IKALNVSNAAAVALYIT--QNHFAK 282
           + +LN + A  + LY    Q H  +
Sbjct: 235 VDSLNAAVACGIILYEAWSQRHLVR 259


>gi|294811612|ref|ZP_06770255.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326440200|ref|ZP_08214934.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294324211|gb|EFG05854.1| Putative rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 272

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 111/258 (43%), Gaps = 11/258 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
            + +++D    +L    RDY  +     + R           G   +  A +        
Sbjct: 3   DLITIEDPDDPRL----RDYTGLTDVELRRRREPAEGLFIAEGEKVIRRAKDAGYAMRSM 58

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAV 129
           LL++K   A  D    LP   PV  V P+  +++ G   VH+G          P   + +
Sbjct: 59  LLSSKWVDAMRDVIDELP--APVYAVSPELAERVTGYH-VHRGALASMQRKPEPDAAELL 115

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             ++ + +++ VND  NIGAI RSA A   D ++ +   +        K + GA+  +PY
Sbjct: 116 AGARRVAIMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPY 175

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQE 246
            R+      L+ +   GF  + L+   K  P+++   +  D++AL+LGAEG+GL  +   
Sbjct: 176 ARLDGWPKGLEGVREAGFTLLALTPHEKAAPIDEVAPHRLDRVALMLGAEGEGLSRRALM 235

Query: 247 TATSMAHLHMPGIIKALN 264
            A     + M   + +LN
Sbjct: 236 AADEWVRIPMAHGVDSLN 253


>gi|306822854|ref|ZP_07456230.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801341|ref|ZP_07695470.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553486|gb|EFM41397.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308222230|gb|EFO78513.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 288

 Score =  189 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 24/271 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR--LDWD 84
           Y  +     ++R               +  AL +    I  LL  +   + ++R     D
Sbjct: 17  YTNLTEIQLRNRLEPSKGLFIAESPKVIDRALASGREPI-SLLVEEPWIDGMSRTFACID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +     PV    P+ + ++ G       LA      L    +  R ++ + V++++ D 
Sbjct: 76  EHWGGDIPVYVASPEQLKRLTGYRLHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS------NLTDA 198
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI            
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGEDKHYWPFTG 195

Query: 199 LQKMHSWGFQTIGLSS-DSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQE 246
           ++++H  GF T+ ++  D    L++ ++            D++ALI G EG GL   T  
Sbjct: 196 MRELHDLGFTTVAMALEDDSISLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTIS 255

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M   + +LNV+ ++AVA Y T 
Sbjct: 256 RADLTVKIPMSHGVDSLNVAASSAVAFYSTA 286


>gi|308187856|ref|YP_003931987.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
 gi|308058366|gb|ADO10538.1| hypothetical protein Pvag_2365 [Pantoea vagans C9-1]
          Length = 394

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 151 RRQRNEETRVYGENACQALFQSRPEAIVRAWFVQEVTPRFREALRWLAANRKAYHVVEDA 210

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            I K  G E  H G+       +    S  L        ++ L+ V++PHN+GAI+RS  
Sbjct: 211 EITKASGTE-HHGGVCFLIKKRMGMAVSEWLSQANTKDCVLALEDVSNPHNLGAIMRSCA 269

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I  +  ++ L+     G+  +  SS 
Sbjct: 270 HFGVKGLLVNDA-SLLESGAAVRTAEGGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSH 328

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL Q    +K+ L+LG E +GL     +       +   G +++LNVS A  V L  
Sbjct: 329 QGTPLAQAQLPEKMVLVLGQEREGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAE 388

Query: 274 YITQN 278
           +  QN
Sbjct: 389 WWRQN 393


>gi|219850021|ref|YP_002464454.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219544280|gb|ACL26018.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 257

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 24/272 (8%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S  + H           K++++    +R   +  +  + GV  VS AL   +  +  +
Sbjct: 2   ITSTANQHV----------KRLRALADTARLRRRERSFVIEGVRLVSDALAAGA-YLQVV 50

Query: 72  LATKNALA----RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           L   + LA         A L H        P  +      E   QG+    A       D
Sbjct: 51  LYAPDQLATTAAGATLLARLQHLPRCFPATPAVVAAAADTEQ-PQGVVAAVA-----WPD 104

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L ++LD + DP N+G +LRSA A     +I     +   S  +A++A GA   +
Sbjct: 105 LPPRPGLRLILDEIQDPGNVGTLLRSAAAAGVGLVICAPGTADPFSPKVARAAMGAHFIV 164

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P  R+    D   ++   G+      S +++P          ALI+G E  G+    +  
Sbjct: 165 PL-RLLPWDDIATEL--AGYTVYAADSAAQQPYYTVDWRQPAALIIGNEAHGVSTAARTL 221

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A S   + M G I++LN   A ++ L+     
Sbjct: 222 AHSTITIPMAGPIESLNAGVAGSIILFEALRQ 253


>gi|126437686|ref|YP_001073377.1| RNA methyltransferase [Mycobacterium sp. JLS]
 gi|254806451|sp|A3Q6V9|Y5122_MYCSJ RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mjls_5122
 gi|126237486|gb|ABO00887.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium sp. JLS]
          Length = 314

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 37/261 (14%)

Query: 43  TSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
               E   + G + V   L    P+  ++  + T+ A  R+     +       +  VP 
Sbjct: 66  RKTDETELVLGRNPVVECLRAEVPATALYVAMGTE-ADERVTEAVQIAADSGISILEVPR 124

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAIL 151
             +D++    A+HQGL L+  P      D +           LL+ LD+++DP N+GAI+
Sbjct: 125 SDLDRM-SNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGAIV 183

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RS  AF   G++  +R S S +AV  ++++GA   +P  R +NL   L+     G Q +G
Sbjct: 184 RSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQVVG 243

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKG------------LRPKTQETATSMAHLHMPGI 259
           L +D    L++                             L    +E   ++  + M G 
Sbjct: 244 LDADGDTTLDELDGTG------------PVVVVVGSEGKGLSRLVRENCDAVVSIPMAGP 291

Query: 260 IKALNVSNAAAVALYITQNHF 280
            ++LN S AA V L       
Sbjct: 292 TESLNASVAAGVVLAEIARQR 312


>gi|120405985|ref|YP_955814.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119958803|gb|ABM15808.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 275

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 105/254 (41%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D    
Sbjct: 21  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVP-RALLGTDRRLTELGTDLA-G 78

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + +  +VG       LA  +          +  ++ + VL+ VND  N+G
Sbjct: 79  LDAPFYRASAEVMADVVGFHLNRGVLASASRAPELTVPHVLDGARTVAVLEGVNDHENLG 138

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     DG+I     +        + + G    +P+ + +N    L+ +   GF+
Sbjct: 139 SVFRNAAGLGVDGVIFGSGCADPLYRRAVRVSMGHALLVPFAKAANWPGDLELLRDQGFR 198

Query: 209 TIGLSSD-SKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++ D + + L Q    +   ++A+++GAEG GL+  T   +     + M     +LN
Sbjct: 199 LLAMTPDPTVQTLAQAMSGLAEQRVAILVGAEGPGLKEHTMRASDVRVRIPMSRGTDSLN 258

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 259 VATAAALAFYERDR 272


>gi|296454038|ref|YP_003661181.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183469|gb|ADH00351.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 292

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 107/277 (38%), Gaps = 30/277 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WD 84
           Y  +     ++R               +  AL      +  LL  +  L  +       D
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPL-SLLVEEPWLEGMKDTFDFID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV    P+ + ++ G       L      LL    +  R+++ + V++++ D 
Sbjct: 76  GRWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWLLPSVAEVCRSARRVAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D       
Sbjct: 136 TNVGALMRSAAALDVDAVLATPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 198 -----ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGL 240
                 + ++ S GF T+ ++ + +     E+              DK+A+I G EG GL
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLAMIFGTEGDGL 255

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 256 SHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|206560438|ref|YP_002231202.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
 gi|198036479|emb|CAR52376.1| putative RNA methylase protein [Burkholderia cenocepacia J2315]
          Length = 260

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 100/261 (38%), Gaps = 7/261 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +   R++  YK++++    +    +     L G H  SA L+  +     +  T+ AL 
Sbjct: 2   KSITSRDNPLYKRLKALAGSTPQQRRSGQALLEGFHLASAYLDTGATPELCV-TTEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P    V  +   +VL
Sbjct: 61  HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPAHPLPARVTETS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + +S  GA   +      +  + 
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRSGMGAHFLLSIHEDVDAGEL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             ++           S   + +     +  +A + G EG G+     + AT    +  PG
Sbjct: 179 SGRLA---VPIALTDSHGAQAVYDCDLSAPVAWVFGNEGAGVSAFWCDAATHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ AAAV L+     
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQ 256


>gi|256060292|ref|ZP_05450465.1| tRNA/rRNA methyltransferase (SpoU) [Brucella neotomae 5K33]
 gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
          Length = 297

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L  ++   + + + LD V
Sbjct: 94  TRTFAKGGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLAGLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  + LI+G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|319404923|emb|CBI78523.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
           15-3]
          Length = 282

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 8/258 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ N+K ++ ++       G+  V  A  N    I  L+ ++N+L     + 
Sbjct: 16  SNPIIKDLKALNKK-KNRNREGIFMAEGLKLVIDAF-NLGWTIHTLIVSRNSLRNSIIEN 73

Query: 86  NLPHPF----PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              +       V  V  + ++ I  ++     + +      S      R   + + LD V
Sbjct: 74  TAANTIANGGSVIKVSQKVLESITHRDNPQTVVGIFKQQWHSIEKIIRRVDDVYIALDRV 133

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    GI+     +   S    ++  G++  IP  R +  T     
Sbjct: 134 RDPGNLGTIIRTADAAGVKGIVLIGETTDPFSPETVRATMGSIFSIPLYRCNESTFLNWS 193

Query: 202 MHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            H  G   +G              KN  I L++G E +GL         ++A +   G  
Sbjct: 194 THFRGM-IVGTHLKGPVDYRTIDFKNGPIILLMGNEQQGLSDVLVNHCNNLARIPQCGHA 252

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A A+ LY  + 
Sbjct: 253 DSLNLAVATAIMLYEIRR 270


>gi|294814058|ref|ZP_06772701.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294326657|gb|EFG08300.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 363

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 39/291 (13%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF-Q 70
           S +  H      N +   K  +    +R   +  +  + G + V  AL +  P+  ++ Q
Sbjct: 87  SARKGHVKNRVANAKA--KQSARRPVARRGGKGSSEMVVGRNPVFEALRDGVPATTLYVQ 144

Query: 71  LLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                +   R             +   P   +D++ G    HQGL L+  P      + +
Sbjct: 145 QFIENDERVRDALQLATGRGTINIMEAPRPELDRMTG-GLNHQGLVLQVPPYEYAHPEDL 203

Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 204 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 263

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG----- 237
                P  R +NLT AL+     G   +GL++D +  +               E      
Sbjct: 264 TAARTPVARATNLTRALESYQKAGLTVVGLAADGEHEVGDL------------EALGGPV 311

Query: 238 --------KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   KGL     ET   +  + MPG  ++LN   AA V LY      
Sbjct: 312 VVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 362


>gi|294055486|ref|YP_003549144.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614819|gb|ADE54974.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 188

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 73/150 (48%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ L+++L+ V DPHN+GA LR+A       ++   + S   +  +   + G  + +P++
Sbjct: 38  DNPLILLLEGVQDPHNLGACLRTASGAGVTALLAPMKGSCGITHTVRDVSCGGADEVPFL 97

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +I N +  L+K    G Q IG S    + L          +ILG+EG GLR  T +    
Sbjct: 98  KIKNTSQLLRKFRDQGIQIIGTSDRGTEMLYDTDLTGPTCIILGSEGWGLRKVTGDLCDQ 157

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + M G +  LNVS +A V LY      
Sbjct: 158 LVSIPMAGKVDCLNVSVSAGVCLYEAVRQR 187


>gi|332670241|ref|YP_004453249.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332339279|gb|AEE45862.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 280

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 109/250 (43%), Gaps = 16/250 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVS-AALNNPSRKIFQLLATKNALARLDWDANL 87
           DY  +     +SRH    + L++    TV   AL    R    LLA +         A L
Sbjct: 19  DYVSLTDVALRSRHEP-AKGLYIAESSTVLGRALRAGHRPRSVLLAPRWVPDLERMLAEL 77

Query: 88  PHP---FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMV------ 137
           P      PV       ++ I G   VH+G LA    P L P  D +  ++          
Sbjct: 78  PDDGATVPVYVADEPVLEAITGFH-VHRGALAAMHRPPLPPVADVLAAARGGAGARRVAV 136

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ V D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI    D
Sbjct: 137 LEDVVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPD 196

Query: 198 ALQKMHSWGFQTIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            ++++ S GF T  L+  D    L++      +++AL+LGAEG GL+P T   +  +  +
Sbjct: 197 GIEELRSHGFVTASLALADDALTLDELVADPPERLALVLGAEGHGLKPATVAASDLVVRI 256

Query: 255 HMPGIIKALN 264
            M G + +LN
Sbjct: 257 PMAGGVDSLN 266


>gi|212712922|ref|ZP_03321050.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
           30120]
 gi|212684400|gb|EEB43928.1| hypothetical protein PROVALCAL_04020 [Providencia alcalifaciens DSM
           30120]
          Length = 370

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 16/252 (6%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPV 93
           ++ R   Q E   +YG +   A   N    I +       T      L W A     + V
Sbjct: 121 EQLRKQRQEETR-IYGENACQAMFKNRPDGIVRAWFLQSVTPRFRDALKWMAANRKAYHV 179

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             V  + + K  G E  H G+               L+   ++  ++ L+ V +PHN+G 
Sbjct: 180 --VDEEELAKASGTE-HHGGVCFIIKKRGGMAAEVYLENAVDTDCVLALEDVGNPHNLGG 236

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RS   F   G+I        ES    ++A G  EHI  I     T  L K    G+  
Sbjct: 237 IMRSCAHFGVKGVILQDAG-MLESGAAIRTAEGGAEHIKAIDADGFTTTLDKFRQAGYTI 295

Query: 210 IGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +  SS    + + +     K+ L+LG E  GL   T +      ++   G +++LNVS A
Sbjct: 296 VTTSSHKGSQDIAKVQLPKKMVLVLGQESDGLSDSTWDQGDMSLYIGGTGKVESLNVSVA 355

Query: 269 AAVAL--YITQN 278
             + L  + +QN
Sbjct: 356 TGIMLSQWWSQN 367


>gi|153807708|ref|ZP_01960376.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
 gi|149129317|gb|EDM20531.1| hypothetical protein BACCAC_01990 [Bacteroides caccae ATCC 43185]
          Length = 268

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 95/235 (40%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R         +     ++ AL++    +  L   K+ +             P
Sbjct: 20  LTETQLRNRTEPGKGIFIVESPKVITRALDSGYEPLAILCEYKHIVGDAAEIIERCENVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P      +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGSRELLATLTGYVLTRGVLCAMRRPEPRSMEEVCREARRIVVIDSVVDATNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +  + + + GA+  +P+     +  +L  +   GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRVVRVSMGAVFFVPWAW---MNGSLSDLGKLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D   P++        K+A+++G EG+GL   T   A  +  + M   + +LN
Sbjct: 197 ALTDDSIPIDNPALVNESKLAIVMGNEGEGLSHDTITEADYVVRIPMVHGVDSLN 251


>gi|182412678|ref|YP_001817744.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177839892|gb|ACB74144.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 296

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 106/307 (34%), Gaps = 50/307 (16%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL++    +L +            +  R   +     + G   +  AL      + 
Sbjct: 4   EKISSLQNPRVKQLVK-----------LRDRRPRDEAGVFLIEGFREIRRALEK-RVPLR 51

Query: 70  QLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           +L          +  A +         +  +      K+  +E       L  AP    T
Sbjct: 52  ELYYAPEWFLGENEPALIAQAEAAGAQLFELTKSAFAKVAYRERPDG--LLAVAPQWKRT 109

Query: 126 LDAV-------------------------------RNSQLLMVLDHVNDPHNIGAILRSA 154
           L  +                               + +  ++V++ +  P N+G ILRSA
Sbjct: 110 LQDLDKIVAGSGGPGRPGSTTPATTSAVGAGAPDLQRAPFILVVEAIEKPGNLGTILRSA 169

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A  CD +I     +   +  + ++++G L  +P +   +    L  + + G +TI  + 
Sbjct: 170 DAAGCDAVIVCDPVTDIFNPNVVRASTGVLFSVPLVVAESAP-VLAWLRAQGVRTIATTP 228

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++K          +A+++G+E  GL     +       + M G   +LNV+ A  + L+
Sbjct: 229 AAEKLYTDADLRGPLAIVMGSEQYGLSEFWLKNCDLPVRIPMAGQADSLNVAMATIITLF 288

Query: 275 ITQNHFA 281
                 A
Sbjct: 289 EAVRQRA 295


>gi|322688977|ref|YP_004208711.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460313|dbj|BAJ70933.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 292

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 30/277 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WD 84
           Y  +     ++R               +  AL      +  LL  +  L  +       D
Sbjct: 17  YVSLTEMQLRNRLEPAKGVFIAESPKVIDRALAADREPL-SLLVEEPWLEGMKDTFDFID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV    P+ + ++ G       L       L    +  ++++ + V++++ D 
Sbjct: 76  GRWGADIPVYVASPEQLKRLTGYRLHRGALCAMRRWPLPSVAEVCKSARRVAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD------- 197
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI+   D       
Sbjct: 136 TNVGALMRSAAALDVDVVLVTPSCGDPLYRRAARVSMGTVFQIPWTRITGFNDDGTENKH 195

Query: 198 -----ALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGL 240
                 + ++ S GF T+ ++ + +     E+              DK+ALI G EG GL
Sbjct: 196 YWPFQGIDELKSLGFTTVAMALEDRSISLDELTRRLHAPAEDPTHIDKLALIFGTEGDGL 255

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              T   A     + M   + +LNV+ ++AVA Y T+
Sbjct: 256 SHHTIARADLTVKIPMSHGVDSLNVAASSAVAFYATR 292


>gi|166032323|ref|ZP_02235152.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
           27755]
 gi|166028046|gb|EDR46803.1| hypothetical protein DORFOR_02026 [Dorea formicigenerans ATCC
           27755]
          Length = 288

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/236 (23%), Positives = 101/236 (42%), Gaps = 22/236 (9%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            VSA +     K       +N   R   +       P+ T   + + K+ G +     L 
Sbjct: 55  PVSALVEKHQMK-------ENEETRQILERFEGSDVPIFTAEFEVLTKLTGFKLTRGMLC 107

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 L    D       +++L++V +P N+GAI RSA A + D +  T   S      
Sbjct: 108 AMKRKPLLNYQDMCAGKDRIVILENVMNPTNVGAIFRSAAALNMDAVFLTPGCSDPLYRR 167

Query: 176 LAKSASGALEHIPYIRISNLTD------------ALQKMHSWGFQTIGLSS-DSKKPLE- 221
            ++ + G +  IP+  I +  +            A+ ++   G++T  L+  D    ++ 
Sbjct: 168 ASRVSMGTVFQIPWTFIQDNNEMRCQREILWPRQAITELREMGYKTAALALTDDSVGIDN 227

Query: 222 -QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + ++ +K+A+ILG EG+GL  +T E       + M   + +LNV+ A+AVA +  
Sbjct: 228 PELMQEEKLAIILGTEGEGLMDRTIEMCDYTVKIPMSHDVDSLNVAAASAVAFWQL 283


>gi|317057706|ref|YP_004106173.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315449975|gb|ADU23539.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 271

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 99/266 (37%), Gaps = 11/266 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-----NNPSRKIFQLLATKNAL 78
            +++   K++       R+  +     + G+     AL     N    +I  +   +   
Sbjct: 5   SKDNPKIKQLSKLYSNRRYRRETGLFVIEGIRGCVDALVDDTLNGGMMEIEGIYYLEEIF 64

Query: 79  ARLDWDAN----LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQ 133
             +  +               +     DKI   ++  QG+ +    L  P T D ++   
Sbjct: 65  EDICDEYKPMLMSLDERKRFIITKDIADKISDTDSC-QGIFVVAKMLDKPFTEDKLKKGG 123

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VLD + DP N+G ++R++ A   DGI+ T       +    +SA G++  +      
Sbjct: 124 KYLVLDELQDPGNLGTMIRTSDAVGLDGIVLTGNCVDLYNPKTVRSAVGSMPRVDIFVEK 183

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +    ++        T     +    + Q   +   A+++G EG+GL     E  +    
Sbjct: 184 DFERVIEAFRLKDIPTAAAVINGGTEIRQYDFSKGCAVVIGNEGRGLMHDHAEMCSHKVT 243

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M G I +LN + AA + L+     
Sbjct: 244 IAMHGHIDSLNAATAATIFLWEMTRQ 269


>gi|118469110|ref|YP_889920.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118170397|gb|ABK71293.1| 23s ribosomal RNA methyltransferase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 277

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 8/257 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    +    +   GV  V   L +       LL T   L  L  D +  
Sbjct: 19  DFRDLNSVDRRPDLPTGKALVIAEGVLVVQRMLASRFIP-RALLGTDRRLGELAADLDRY 77

Query: 89  ---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 P      + + + +G       LA           D + +++ + VL+ VND  
Sbjct: 78  PQYADVPFYRASAEVMAEAIGFHLNRGVLASAPRAAELTVDDVIADARTIAVLEGVNDHE 137

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I R+A   + D +I     +        + + G    +P+ R S+    L+ +   
Sbjct: 138 NLGSIFRNAAGLAVDAVIFGAGCADPLYRRAVRVSMGHALLVPFARASSWPTDLELLRDK 197

Query: 206 GFQTIGLSSD-SKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           GF+ + ++ D S   L      ++ D++A+++GAEG GL  +T   +     + M     
Sbjct: 198 GFRLLAMTPDPSAATLSDAMVQLEGDRVAILVGAEGPGLTERTMRASDVRVRIPMSRGTD 257

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ AAA+A Y    
Sbjct: 258 SLNVATAAALAFYERAR 274


>gi|17988081|ref|NP_540715.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|256045941|ref|ZP_05448813.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563222|ref|ZP_05833708.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|265992352|ref|ZP_06104909.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983831|gb|AAL52979.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|260153238|gb|EEW88330.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|263003418|gb|EEZ15711.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 297

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L  ++   + + + LD V
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLAGLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GA++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  + LI+G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|298208325|ref|YP_003716504.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
 gi|83848246|gb|EAP86116.1| putative rRNA methylase [Croceibacter atlanticus HTCC2559]
          Length = 264

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 102/256 (39%), Gaps = 4/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   KK+    +KSR+  +     + G+  +  AL      I ++      ++    + 
Sbjct: 9   SNPTLKKLLQLQEKSRNRRKEGLFVVEGLRELRLALKGGYN-ISEVFFCPELVSEDTLNN 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDP 144
            +  P     +  +   K+  + +  +G+           +D     + L+++ +    P
Sbjct: 68  LIKAPISYTELSLEVYQKVAYRGST-EGVITIVKTKAHQLVDIKTSETPLILIAEAPEKP 126

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+LR+A A + D +I     +   +  + +S+ G +       +   T+ +  +  
Sbjct: 127 GNIGALLRTADAANVDAVIIANPKTDLYNPNIIRSSVGCVFTNQVA-VGTTTEIISFLKK 185

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   +  + +    +      A+++G E  GL  + ++ AT    + M G I ++N
Sbjct: 186 QKVNIYCAALQASEHYHLQDFTTATAIVVGTEATGLSDEWRKNATQNIIIPMQGEIDSMN 245

Query: 265 VSNAAAVALYITQNHF 280
           VS AA + +Y  +   
Sbjct: 246 VSVAAGILIYEAKRQR 261


>gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
 gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
          Length = 297

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L +++   + + + LD V
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLASLKPKGNDVYIALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTIIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  + L++G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|298384290|ref|ZP_06993850.1| rRNA methylase [Bacteroides sp. 1_1_14]
 gi|298262569|gb|EFI05433.1| rRNA methylase [Bacteroides sp. 1_1_14]
          Length = 266

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 94/235 (40%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R         +     +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPGKGIFIVESPKVIERALDAGYEPLAILCEHKHITGDASNIIERCGNVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P++    +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +     +L  +   GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMD---GSLSDLGKLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D+   ++  +     ++A+++G EG GL P+T   A  +  + M   + +LN
Sbjct: 197 ALTDNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLN 251


>gi|221215472|ref|ZP_03588436.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
 gi|221164656|gb|EED97138.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD1]
          Length = 260

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 9/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P    V ++   +VL
Sbjct: 61  HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + ++  GA   +         DA
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFVLSIHEDV-APDA 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L              S   + +     +  +A + G EG G+    ++ A     +  PG
Sbjct: 178 LAA--RLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281
            +++LNV+ AAAV L+    Q   A
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260


>gi|238896030|ref|YP_002920766.1| putative methyltransferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238548348|dbj|BAH64699.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 361

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 93/245 (37%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           ++  +        ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAGEEDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++        ES    ++A G  EH+  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVVQDAG-VLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
           +  PL +     K+ L LG E  GL      +A     +   G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLAE 354

Query: 274 YITQN 278
           +  QN
Sbjct: 355 WWRQN 359


>gi|313141621|ref|ZP_07803814.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
 gi|313130652|gb|EFR48269.1| 23S rRNA methyltransferase [Helicobacter canadensis MIT 98-5491]
          Length = 244

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 5/241 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M   N+   + ++ + + +YG   V   L     KI  +   K    +  ++       P
Sbjct: 1   MSKINKYKNNENRIKLMVVYGKRIVELILAQHQEKIINIYLAKEVD-KTFFNRLKKTQKP 59

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +  +  +    +  K   HQG  LE   L       +++   ++VL  ++D  N+G++ R
Sbjct: 60  ILRLDAKKAQAMA-KGGNHQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLGSLFR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA     DGI+    ++  +  VL +++SGA+  +P+  + N  D   ++    F  +G 
Sbjct: 119 SAYGLGVDGIVICGIHNFKQEGVL-RASSGAMLGMPFCVVYNPLDVFHELKQADFVLLGT 177

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S   +          K AL+LG EG+GL  K          + M     +LNV  A A+ 
Sbjct: 178 SLQGQNL--PISLESKKALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAIL 235

Query: 273 L 273
           +
Sbjct: 236 I 236


>gi|152971435|ref|YP_001336544.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150956284|gb|ABR78314.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 361

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 93/245 (37%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 176

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           ++  +        ++ L+ V +PHN+GAI+RS  
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRHGTSVAQWVAKAGEEDCVLALEDVGNPHNLGAIMRSCA 235

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++        ES    ++A G  EH+  I   +  D L +    G+  +  SS 
Sbjct: 236 HFGVKGVVVQDAG-VLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIVSTSSH 294

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
           +  PL +     K+ L LG E  GL      +A     +   G +++LNVS A  V L  
Sbjct: 295 NGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLLAE 354

Query: 274 YITQN 278
           +  QN
Sbjct: 355 WWRQN 359


>gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
          Length = 297

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++ +   +           L  ++   + + + LD V
Sbjct: 94  TRTFAKGGLVLEVTEKVISAITRRDNLQ--MVAGVFEQQYHQLAGLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  I LI+G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|330872261|gb|EGH06410.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 201

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 12/197 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 184

Query: 221 EQEIKNDKIALILGAEG 237
            Q+       +I+GAEG
Sbjct: 185 YQQDLTGPTIIIMGAEG 201


>gi|225851684|ref|YP_002731917.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|256112654|ref|ZP_05453575.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264805|ref|ZP_05467337.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|265994095|ref|ZP_06106652.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|225640049|gb|ACN99962.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis ATCC 23457]
 gi|262765076|gb|EEZ10997.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263095215|gb|EEZ18884.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408171|gb|ADZ65236.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M28]
 gi|326537884|gb|ADZ86099.1| tRNA/rRNA methyltransferase, SpoU [Brucella melitensis M5-90]
          Length = 297

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L  ++   + + + LD V
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLAGLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+GA++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGAVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  + LI+G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|288575697|ref|ZP_06393898.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
 gi|288567117|gb|EFC88677.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
          Length = 260

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 98/287 (34%), Gaps = 36/287 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++E++                  K +     +S+   +     L GVH +   
Sbjct: 1   MKSITSAQNEQL------------------KHLSKLLSQSKARREYGQTVLEGVHLLQVY 42

Query: 61  LNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L      ++++ L  +KN    +    +      +  V  + + KI           L  
Sbjct: 43  LEAGYTPKQVY-LPESKNTHPEIRNLISSLDEDCITWVGNEALSKITS---------LND 92

Query: 119 APLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           A  +   ++      L      +VLD + DP N+G +LRSA A     I+         S
Sbjct: 93  ADDVMTWIEIPPQGDLPLSGDCVVLDRLQDPGNVGTVLRSAAASGVRQIVLGNDCVDIWS 152

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             + ++  GA   +      +L   L            L   +   L Q   N   A + 
Sbjct: 153 PKVLRAGMGAHLLLNIYSRVSLPQWLDTYQDK-IWATALDGRNPSDLYQLDLNAPCAWVF 211

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G EG G+  +  E       + M G  ++LNV+ AA V L+      
Sbjct: 212 GNEGSGVSREILEKVDGGVRIPMLGQTESLNVAMAATVCLFEQMRQR 258


>gi|152991818|ref|YP_001357539.1| RNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151423679|dbj|BAF71182.1| RNA methyltransferase, TrmH family [Sulfurovum sp. NBC37-1]
          Length = 234

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 5/226 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG      AL      +  +   K  +                    +   + + K 
Sbjct: 7   MIIYGKQVCLYALEKHPETVSTVYVAKKGILPQKLFHQFHDKIKFLE---EKWAQSMSKG 63

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQGL LE + L  P+L  V+    L++LD + D  NIGAI+RSA A   D +I T   
Sbjct: 64  GNHQGLLLEISELEQPSLSDVKREDFLVILDGLTDVGNIGAIVRSAYALGADAVIATGVK 123

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +  A +A+++SGAL  +P++ I N+ D   ++H  GF+  G + +       E +  +
Sbjct: 124 QLNFEA-IARTSSGALLDMPFLLIPNILDVCNELHQVGFKLYGAAMEGDAVQLMEFERKR 182

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ALILG+EGKGL  K Q     +  + M     +LNVS AAA+ ++
Sbjct: 183 -ALILGSEGKGLSKKAQGKIDHLISIEMKHAFDSLNVSAAAAILIH 227


>gi|253569710|ref|ZP_04847119.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840091|gb|EES68173.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 266

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 94/235 (40%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R         +     +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPDKGIFIVESPKVIERALDAGYEPLAILCEHKHITGDASDIIERCGNVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P++    +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGSRELLATLTGYVLTRGVLCAMRRPVVRSMAEVCREARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +     +L  +   GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMD---GSLSDLGKLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D+   ++  +     ++A+++G EG GL P+T   A  +  + M   + +LN
Sbjct: 197 ALTDNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLN 251


>gi|238854475|ref|ZP_04644814.1| rRNA methylase [Lactobacillus jensenii 269-3]
 gi|260665477|ref|ZP_05866324.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282934545|ref|ZP_06339797.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|313471838|ref|ZP_07812330.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|238832902|gb|EEQ25200.1| rRNA methylase [Lactobacillus jensenii 269-3]
 gi|239529248|gb|EEQ68249.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|260560745|gb|EEX26722.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281301383|gb|EFA93675.1| rRNA methylase [Lactobacillus jensenii 208-1]
          Length = 255

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 13/243 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVPPQ 99
           +  Q     + G H V  A  +     + LLAT  A  +L   +  +L     V+    +
Sbjct: 23  YREQEGYYLIEGFHLVDEAFKSKLNFKY-LLATPAAFEKLNIQYQLDLTDKRLVQI--NE 79

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + K +      Q + +     ++       N    ++LD + DP NIG I+R+A A   
Sbjct: 80  RVAKHLSATTNSQDVFMVLK--INQPKHFTFNFGKWILLDSLADPGNIGTIIRTADAAGF 137

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-K 218
           +G++ ++  +   +    ++  G+  H+P I+ ++L   +++             D + K
Sbjct: 138 NGVVLSENCADLYNPKTQRAMQGSQFHLPIIK-ADLLKTIEQFKENYIPVYASVLDDEAK 196

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L    K  ++ALI+G E  G+  +    A     + + G  ++LN + AA + +Y    
Sbjct: 197 ELPDFEKTKELALIIGNEANGVSDEAVNLADEKLFIPIKGQAESLNAAIAAGIMIY---- 252

Query: 279 HFA 281
           HFA
Sbjct: 253 HFA 255


>gi|221198307|ref|ZP_03571353.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
 gi|221208246|ref|ZP_03581250.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
 gi|221171894|gb|EEE04337.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2]
 gi|221182239|gb|EEE14640.1| RNA methyltransferase, TrmH family [Burkholderia multivorans CGD2M]
          Length = 260

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 103/265 (38%), Gaps = 9/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P    V ++   +VL
Sbjct: 61  HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSPPLPARVAHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + ++  GA   +           
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDVAPEAL 178

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             ++           S   + +     +  +A + G EG G+    ++ A     +  PG
Sbjct: 179 AARL---DVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281
            +++LNV+ AAAV L+    Q   A
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260


>gi|15608021|ref|NP_215396.1| rRNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|148660658|ref|YP_001282181.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|167968352|ref|ZP_02550629.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|307083402|ref|ZP_07492515.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|1731374|sp|Q10543|Y881_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
           Rv0881/MT0904
 gi|1314020|emb|CAA97388.1| POSSIBLE RRNA METHYLTRANSFERASE (RRNA METHYLASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148504810|gb|ABQ72619.1| putative rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|308366818|gb|EFP55669.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
          Length = 288

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    +    +   GV  V   L +    +  L  T   LA L  D    
Sbjct: 28  DFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-G 85

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + +++G       LA             V  ++ + VL+ VND  N+G
Sbjct: 86  VGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQVVAGARTVAVLEGVNDHENLG 145

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A   S D ++     +        + + G    +PY R ++    L  +   GF+
Sbjct: 146 SIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFR 205

Query: 209 TIGLSSDSKKP-LEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++       L + I    +++IAL++GAEG GL       +     + M     +LN
Sbjct: 206 LLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLN 265

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 266 VATAAALAFYERTR 279


>gi|161524445|ref|YP_001579457.1| tRNA/rRNA methyltransferase SpoU [Burkholderia multivorans ATCC
           17616]
 gi|189350800|ref|YP_001946428.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|160341874|gb|ABX14960.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia multivorans ATCC
           17616]
 gi|189334822|dbj|BAG43892.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
          Length = 260

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 104/265 (39%), Gaps = 9/265 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    + H  +     L G H  SA L+  +     + AT+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCV-ATEGALG 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
             +  A +      + V  P  +   +       G  L       P    V ++   +VL
Sbjct: 61  HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTS--VVL 118

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V D  N+G+ILRSA A     +      + + S+ + ++  GA   +         DA
Sbjct: 119 DGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDV-APDA 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L              S   + +     +  +A + G EG G+    ++ A     +  PG
Sbjct: 178 LAA--RLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPG 235

Query: 259 IIKALNVSNAAAVALYI--TQNHFA 281
            +++LNV+ AAAV L+    Q   A
Sbjct: 236 GMESLNVAAAAAVCLFEQVRQQRRA 260


>gi|171743049|ref|ZP_02918856.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
           27678]
 gi|171278663|gb|EDT46324.1| hypothetical protein BIFDEN_02175 [Bifidobacterium dentium ATCC
           27678]
          Length = 288

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 111/271 (40%), Gaps = 24/271 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR--LDWD 84
           Y  +     ++R               +  AL +    I  LL  +   + ++R  +  D
Sbjct: 17  YTNLTEIQLRNRLEPSKGLFIAESPKVIDRALASGREPI-SLLVEEPWIDGMSRTFVCID 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +     PV    P+ + ++ G       LA      L    +  R ++ + V++++ D 
Sbjct: 76  EHWGGDIPVYVASPEQLKRLTGYRLHRGALAAMRRWTLPSVEEVCRGARRIAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS------NLTDA 198
            N+GA++RSA A   D ++ T           A+ + G +  IP+ RI            
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQIPWTRIGGDDKHYWPFTG 195

Query: 199 LQKMHSWGFQTIGLSS-DSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQE 246
           ++++H  GF T+ ++  D    L++ ++            D++ALI G EG GL   T  
Sbjct: 196 MRELHDLGFTTVAMALEDDSVSLDELVRRLNNGPAETDHIDRLALIFGTEGDGLSHHTIS 255

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            A     + M   + +LNV+ ++AVA Y T 
Sbjct: 256 RADLTVKIPMSHSVDSLNVAASSAVAFYSTA 286


>gi|319406413|emb|CBI80053.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
           1-1C]
          Length = 280

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ N+K ++ ++       G+  V  AL N    I  L+ +KN+L+    + 
Sbjct: 16  SNPIIKYLKALNKK-KNRNRESIFMAEGLKLVIDAL-NLGWTIHTLIVSKNSLSNSIIEN 73

Query: 86  NLPHPF----PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDH 140
              +       V     + ++ I  ++   Q +              +R    + + LD 
Sbjct: 74  TAANAIANGGSVIKASQKVLESITHRD-NPQTVIGIFKQQWHSIEKIIRQIDDVYIALDR 132

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    GII     +   S    ++  G++  +P  R +  T    
Sbjct: 133 VRDPGNLGTIIRTADAAGAKGIILIGETTDPFSPETVRATMGSIFSVPLYRCNESTFLNW 192

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             H  G   +G              KN  I L++G E +GL          +A +   G 
Sbjct: 193 STHFKGM-IVGTHLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVNHCHKLARIPQCGH 251

Query: 260 IKALNVSNAAAVALYITQN 278
             +LN++ A A+ LY  + 
Sbjct: 252 ADSLNLAVATAIMLYEIRR 270


>gi|319892126|ref|YP_004149001.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
 gi|317161822|gb|ADV05365.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
          Length = 248

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 13/236 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
              +     L G H +  A+ +        +   + +     +A       V  +  +  
Sbjct: 23  ERDKQGLAILEGFHLIEEAVESQIMVTQLFMIEPSRVPTELIEAAEE----VYEITQKVA 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           + + G     QG+         P +D     Q +++LD + DP N+G ++R+A A   D 
Sbjct: 79  ETLSGT-VTPQGIFAII---EKPQVDVTAAKQ-VLILDRIQDPGNLGTMIRTADAAGLDL 133

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ TK  +      + +++ G++ HIP   + +++  +           G +        
Sbjct: 134 IVMTKGTADVYQDKVLRASQGSVFHIPIQYVDDMSAWMSSFKG---PIYGTALQDATTYH 190

Query: 222 QEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           Q     D  ALILG EG+G+        T    + + G  ++LNV+ AA + ++  
Sbjct: 191 QVASQQDTFALILGNEGEGVAMDLLAHTTQNLIIPIYGQAESLNVAVAAGILMFYL 246


>gi|183982465|ref|YP_001850756.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
 gi|183175791|gb|ACC40901.1| 23S rRNA methyltransferase TsnR [Mycobacterium marinum M]
          Length = 275

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 7/250 (2%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +  Q+     +       G + V AA       I +L  T+ A  R +         PV 
Sbjct: 27  AKLQRHVGRRRTSRFLAEGPNLVEAA--AARGLIRELYVTEAAEQRHEPLLAR-QDAPVY 83

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRS 153
            V  +   K +       GL        +   + +  +  L+ V   + +P N G ++R 
Sbjct: 84  VVT-ERAAKALSDTVTPSGLVAVCEMPTTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRI 142

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   + ++         +    ++++G++  IP I   + + AL  +   G Q +   
Sbjct: 143 ADAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVAPDTSAALGALRGAGLQVLASV 202

Query: 214 SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            D +K L+          A + G E  GL  +    A     + M G  ++LNV+ AAA+
Sbjct: 203 LDGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAI 262

Query: 272 ALYITQNHFA 281
            LY +    +
Sbjct: 263 CLYQSARALS 272


>gi|242238337|ref|YP_002986518.1| methyltransferase [Dickeya dadantii Ech703]
 gi|242130394|gb|ACS84696.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
          Length = 349

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A  N+    I +    +    R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFNSRPDAIVRAWFLQEVTPRFREALRWMAANRKAYHVVDND 164

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + +  G E  H G+           +   L        ++ L+ V +PHN+G I+RS  
Sbjct: 165 ELTRASGTE-HHGGVCFLIKKRRGLDVQTYLPHAPEKDCVLALEDVGNPHNLGGIVRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +G++     S  ES    ++A G  EH+  I+  NL DAL +    G+  +  SS 
Sbjct: 224 HFGVNGVLVRDA-SQLESGAAVRTAEGGAEHVKAIQSDNLIDALSQFRKAGYTIVTTSSH 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L       +  ++LG E  GL     +       ++  G +++LN+S A  + L  
Sbjct: 283 KGTALYDTQLPARTVIVLGQESDGLSDGAWQQGDMKVSINGTGNVESLNISVATGILLAE 342

Query: 274 YITQNH 279
           +   N 
Sbjct: 343 WWRHNR 348


>gi|258591300|emb|CBE67599.1| putative enzyme [NC10 bacterium 'Dutch sediment']
          Length = 261

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 11/240 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDKIVG 106
            L G H V  AL    R+I ++   +    +R+            P      + + ++  
Sbjct: 5   ILVGPHAVLEALRAKRRQIDRIYLARERYDSRIVEIVKRARELGVPCTQEKRERLGEL-S 63

Query: 107 KEAVHQGLALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K A HQG+    +             + A     LL++LD V DP N+GAI+R+A A   
Sbjct: 64  KGATHQGVLAVVSEADYEDPFELVARIKAATPLPLLLLLDGVQDPQNLGAIIRTAEAAGA 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           +G+   K  +   +  +AK+++GA EH+   R++ L   L  +   G  T+G    + + 
Sbjct: 124 NGLFIAKHRAAGITPAVAKASAGASEHLAVARVAGLPAFLAWLKDQGIWTLGADPSAVQS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +      + +++G E +GL    ++    +A +   G + +LN + AAAV L+  +  
Sbjct: 184 LYEIDLRAPMGVVIGGEHRGLTMLVRQRCDLLARIPTRGRVDSLNAAAAAAVFLFEIRRQ 243


>gi|269217371|ref|ZP_06161225.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
 gi|269129508|gb|EEZ60593.1| SpoU rRNA methylase family protein [Slackia exigua ATCC 700122]
          Length = 332

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 13/200 (6%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHN 146
           PV   P + + ++ G       L     P LS   + +       ++ + +L+ + D  N
Sbjct: 133 PVFVAPVEELKRLTGFALTRGILCAMRRPKLSSVEELLAGVHPGGARRIAMLEGIVDHTN 192

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN----LTDA-LQK 201
           +GAI RSA A   D ++              + + G +  +P+ RI N       A L++
Sbjct: 193 VGAIFRSAAALGVDAVLVAPTCCDPLYRRSVRVSMGTVFQVPWTRIGNDAHDWPRAGLEE 252

Query: 202 MHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +H  G+ T  ++ SD   PL+       +++AL+ G EG GL  +T E       + M  
Sbjct: 253 LHRLGYATAAMALSDDSIPLDDARLAACERLALVFGTEGDGLTARTIEGCDYTVRIPMAH 312

Query: 259 IIKALNVSNAAAVALYITQN 278
            + +LNV+ A+AVA +    
Sbjct: 313 HVDSLNVAAASAVAFWELCR 332


>gi|213966414|ref|ZP_03394592.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
 gi|213950934|gb|EEB62338.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
          Length = 290

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 105/266 (39%), Gaps = 15/266 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----- 83
           D + +   + +         +   G   V   + +    +  +  T+  LA L       
Sbjct: 25  DIRNLNKSDSRPDLPGGKGLVIAEGTLIVPRLVRS-RFPLRAVFGTRQKLASLADGLTAS 83

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM-VLDHVN 142
           +A +    P   +  + +    G + +H+GL          ++D V +    + V++ V 
Sbjct: 84  EAAIAETVPWFELDREVLAAAAGFD-LHRGLLATADRAPELSVDQVLSGATTLAVMEGVG 142

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR----ISNLTDA 198
           D  NIGA+ R+A     DG++     +        + + G +  +P+       +    +
Sbjct: 143 DHENIGALFRNAAGMGVDGVVFGAACADPLYRRSVRVSMGHVLTVPFATLPGTTTTWQRS 202

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L ++   GF+ + ++      L   +  DKIA+++GAEG GL           A + M  
Sbjct: 203 LDQLKEQGFRVVSMTPAGTVDLWDAMDTDKIAILVGAEGPGLTEHAMAATDVRARIPMSP 262

Query: 259 IIKALNVSNAAAVALYIT---QNHFA 281
              +LNV+ +AA+A Y     Q+  A
Sbjct: 263 GTDSLNVATSAAIAFYERLRVQSQRA 288


>gi|325954534|ref|YP_004238194.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323437152|gb|ADX67616.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 257

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 9/257 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +    +KSR   +     + G+     A+    R + +    ++      +D 
Sbjct: 7   QNPKIKNLLKLQEKSRERKKQNTFVVEGLQENRLAIEGGFRAL-EFYICED-----IFDD 60

Query: 86  NLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           NLP     +  V     +KI  ++     + +      + +   +  + L++VL+ V  P
Sbjct: 61  NLPLENGKIYKVNKPVFEKIAYRKTTGGIVGVYATKENNLSGVELPENALILVLEAVEKP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAILR+A     D +I         +  + +S+ G L         +  + L  + +
Sbjct: 121 GNLGAILRTADGAKVDAVIVCDETVDFYNPNVIRSSVGTLFTNQIAS-GSKEEVLNFLKN 179

Query: 205 WGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              Q +     D+ K L +   +   A++LG E  GL     + +  +  + M G + +L
Sbjct: 180 NNIQIVSTFLRDNTKSLYEMDFSSSSAIVLGTEATGLSDFWADESDVLIKIPMLGKVDSL 239

Query: 264 NVSNAAAVALYITQNHF 280
           NVSNAAA+ +Y      
Sbjct: 240 NVSNAAAICVYEAVRQR 256


>gi|242310426|ref|ZP_04809581.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
 gi|239522824|gb|EEQ62690.1| RNA methyltransferase [Helicobacter pullorum MIT 98-5489]
          Length = 228

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG H V   L      I  +   K                 +K +  +    +  + 
Sbjct: 1   MVVYGKHIVELILLKYQYLIENIYLAKEVDKSFFGLLKKTKKQIIK-LDAKKAQAMA-RG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  LE  PL       ++    ++VL  ++D  N+G+I RSA A   DGI+     
Sbjct: 59  GNHQGYLLEIKPLEVLEFSKIKEMDFVLVLCGISDVGNLGSIFRSAYALGVDGIVVCGIK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              +  VL +++SGA+  +P+  + N  D + ++    F   G S   K    Q   + K
Sbjct: 119 DFKQEGVL-RASSGAMLGMPFCVVHNPLDVINELKQSDFTLFGTSMQGKDL--QNALSGK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL LG+EG GL  K          + M     +LNV  A A+ +
Sbjct: 176 KALFLGSEGHGLSNKILAKMDYNLTIPMKREFDSLNVGVAGAILI 220


>gi|23501061|ref|NP_697188.1| RNA methyltransferase [Brucella suis 1330]
 gi|148559270|ref|YP_001258183.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|161618138|ref|YP_001592025.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163842420|ref|YP_001626824.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|254705329|ref|ZP_05167157.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 3 str. 686]
 gi|256368614|ref|YP_003106120.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260567212|ref|ZP_05837682.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261756040|ref|ZP_05999749.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|294851549|ref|ZP_06792222.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|23346928|gb|AAN29103.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|148370527|gb|ABQ60506.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
 gi|161334949|gb|ABX61254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163673143|gb|ABY37254.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|255998772|gb|ACU47171.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260156730|gb|EEW91810.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261745793|gb|EEY33719.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|294820138|gb|EFG37137.1| TrmH family RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 297

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L  ++   + + + LD V
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLAGLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  + LI+G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|86133430|ref|ZP_01052012.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820293|gb|EAQ41440.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 264

 Score =  189 bits (480), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 101/256 (39%), Gaps = 3/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +    +KSR   +     + G+  ++ AL         +L   + + +   D 
Sbjct: 8   QNTYIKGLLKLQEKSRERKKLGLFIIEGLREINLALKANY-TFRTVLFCIDLIQKTAVDT 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            +     V  +  +  +K+  + +    +A           +     + L+++ + +  P
Sbjct: 67  LIDSSTEVIEISKEVYEKLAYRNSTEGIIAVANAKSFSLGEISFSNKNPLILIAESLEKP 126

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA+LR+A A + D +I     S   ++ + +S+ G +        ++  + +  +  
Sbjct: 127 GNVGALLRTADAANVDAVIIANPKSDLYNSNIIRSSVGCVFTNQIAVGTS-EEIITFLKE 185

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                   +  +      E      A+++G E  GL    ++ AT   ++ M G I ++N
Sbjct: 186 NKISIYAATLQNSNKYHLEDYKKPSAIVVGTEATGLSEIWRDKATQNINIPMQGKIDSMN 245

Query: 265 VSNAAAVALYITQNHF 280
           VS AAA+ ++  +   
Sbjct: 246 VSVAAAIVIFEAKRQR 261


>gi|238755721|ref|ZP_04617055.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
           ATCC 29473]
 gi|238706088|gb|EEP98471.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia ruckeri
           ATCC 29473]
          Length = 372

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/247 (23%), Positives = 94/247 (38%), Gaps = 14/247 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVP 97
              + E   +YG +   A  N+    I +       T      L W A     + V  V 
Sbjct: 127 RRQRAEETRVYGENACKALFNSRPDAIVRAWFVQSVTPRFRDALKWMAANRKAYHV--VD 184

Query: 98  PQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + K  G E  H G+               L        ++ L+ V +PHN+GAI+R+
Sbjct: 185 EEELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQAPKQDCVLALEEVGNPHNLGAIMRT 243

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F  +G++     +  ES    ++A G  EHI  I   +    L    + G+  +  S
Sbjct: 244 CAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRNAGYTIVTTS 302

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           S     L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L
Sbjct: 303 SHKGTSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILL 362

Query: 274 --YITQN 278
             +  QN
Sbjct: 363 AEWWRQN 369


>gi|119025735|ref|YP_909580.1| tRNA/rRNA methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
 gi|154487443|ref|ZP_02028850.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
           L2-32]
 gi|118765319|dbj|BAF39498.1| possible tRNA/rRNA methyltransferase [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154083961|gb|EDN83006.1| hypothetical protein BIFADO_01296 [Bifidobacterium adolescentis
           L2-32]
          Length = 292

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 24/272 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-----WD 84
           Y  +     ++R               +  AL      I  LL  ++ +  +       +
Sbjct: 17  YVNLTEIQLRNRLEPSKGLFIAESPKVIDRALAAGREPI-SLLVEESWIDGMSGMFDVIE 75

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  PV    P+ + ++ G       LA      L    +  R ++ + V++++ D 
Sbjct: 76  KRWGDGIPVYVASPEQLKRLTGYRLHRGALAAMKRWSLPSVEEVCRGARRVAVMENIVDH 135

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS------NLTDA 198
            N+GA++RSA A   D ++ T           A+ + G +  +P+ RI            
Sbjct: 136 TNVGALMRSAAALDVDAVLVTPSCGDPLYRRAARVSMGTVFQVPWTRIGGDDKHYWPFTG 195

Query: 199 LQKMHSWGFQTIGLSS-DSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQE 246
           ++++H  GF T+ ++  D    L + ++            DK+ALI G EG GL   T  
Sbjct: 196 MRELHDLGFTTVAMALEDDSISLAELVRRLNNAETESDHIDKLALIFGTEGDGLSHHTIS 255

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            A     + M   + +LNV+ ++AVA Y T+ 
Sbjct: 256 RADLTVKIPMSHGVDSLNVAASSAVAFYATRR 287


>gi|254690454|ref|ZP_05153708.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 6 str.
           870]
 gi|254694943|ref|ZP_05156771.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 3 str.
           Tulya]
 gi|256258710|ref|ZP_05464246.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 9 str.
           C68]
 gi|260756006|ref|ZP_05868354.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260885026|ref|ZP_05896640.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261215282|ref|ZP_05929563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|297247542|ref|ZP_06931260.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|260676114|gb|EEX62935.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874554|gb|EEX81623.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260916889|gb|EEX83750.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|297174711|gb|EFH34058.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 297

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 89/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L  ++   + + + LD V
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLAGLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  I LI+G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|172040800|ref|YP_001800514.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852104|emb|CAQ05080.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 269

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 16/255 (6%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++    +       G + V+AAL     ++  L  T+ A  R  +  ++     V  +  
Sbjct: 19  RAATRRKTGRFLAEGENAVTAALARG--EVLDLYVTEAAWERFPFLQDV-TSTHVHLITE 75

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           +  D +  +   H GL    A  +         AV+NS L+ V    N+P N G I+R A
Sbjct: 76  RAADHL-SETVTHTGLFALCANQMVDDDALIASAVKNSPLIAVPVETNEPGNAGTIIRVA 134

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G++        +     ++++G+L ++P  R +++ + ++K+H   FQ +  ++
Sbjct: 135 DAFGAGGVLFAGNTVDPQGGKAVRASAGSLFNLPVARNTSVVEVVEKLHEAEFQILATAA 194

Query: 215 DSKKPLEQE------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           D    L +       +     A + G E  GL     + A     + M G  ++LN++ A
Sbjct: 195 DGDVNLHEAADPANGMLAQPTAWLFGNEAHGLGD-WLDLADIRVSIPMQGQAESLNLATA 253

Query: 269 AAVALYITQN-HFAK 282
           A+V LY +     AK
Sbjct: 254 ASVCLYESSKAQIAK 268


>gi|315444459|ref|YP_004077338.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|315262762|gb|ADT99503.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 249

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 94/239 (39%), Gaps = 5/239 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +     +       G + V AAL      + ++ AT++A  R           PV  V  
Sbjct: 9   RHTGRRRAARFLAEGPNLVEAALRRG--LVSEVFATESAADRFGPLLA---GAPVHLVTE 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    +         +A+ T P +           L+ V   +++P N G ++R A A  
Sbjct: 64  KAAKALSDTVTPVGLVAVCTLPEVDLAEVLTGEPTLVAVPVGISEPGNAGTVIRVADAMG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++         +    ++++G++  IP I   +    + ++   G Q +        
Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVISHHDAVGVVTQLKGSGLQVLATVLGGSV 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           PL++   +   A + G E  GL       AT+   + M G  ++LNV++AAA+ LY + 
Sbjct: 184 PLDEVDLSGPTAWLFGPEAHGLPADVVALATAGVEIPMAGGAESLNVASAAAICLYQSA 242


>gi|15594861|ref|NP_212650.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
 gi|3915369|sp|O51468|Y516_BORBU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BB_0516
 gi|2688440|gb|AAC66889.1| rRNA methylase (yacO) [Borrelia burgdorferi B31]
          Length = 228

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 107/224 (47%), Gaps = 14/224 (6%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-- 128
           +   K+   +            +  +    +DKI+ K   H+G AL+     +  +    
Sbjct: 4   IYQKKSPKTKEIEQLAKTQNIKIIRINTNELDKIL-KNKDHRGFALKLKLEKNKNVKTQT 62

Query: 129 -----------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                       + +  +++LD + DP N GAILR+A  FS D +ITT++ S  +++ + 
Sbjct: 63  KDFENLLETFKKKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVL 122

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +++SGA +++  + ++N+ + +  + ++GF         +   + +I + KIALILG EG
Sbjct: 123 RTSSGASQYVKKMTVTNINNTINLLKNYGFWIYTGDIKGQDINKIKINDKKIALILGNEG 182

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           KG+    +E +  +  +   G I +LNVS +  + ++  +    
Sbjct: 183 KGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQLN 226


>gi|258404224|ref|YP_003196966.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
           retbaense DSM 5692]
 gi|257796451|gb|ACV67388.1| RNA methyltransferase, TrmH family, group 3 [Desulfohalobium
           retbaense DSM 5692]
          Length = 244

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 12/239 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            + G+H V   L     ++  +L  K     +   D         + +P   +DK++   
Sbjct: 7   VVAGLHPVKELLERTPDRVETVLLQKGGRQQKEIKDLCQATGIRFQILPRAQLDKLIS-- 64

Query: 109 AVHQGLALET-AP---LLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           A HQG+A    +P        L+ V ++ L  L+ LD V DP NIG + R+  +    G+
Sbjct: 65  AHHQGIAARVFSPGFVDPQVLLETVADAPLPLLIALDQVQDPGNIGTLARTLYSLGGAGL 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLE 221
           +  K  S        K++SGAL ++P  +++NL   L++        IG         + 
Sbjct: 125 VLPKNRSAPLGGGALKASSGALNYLPVAQVTNLGRFLEQATQAALPVIGTGLTPDSLSVY 184

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +   +    L+LG E KG+RP   +   ++  + +     +LNV+ A A+ +  ++ Q 
Sbjct: 185 KARLSTPAVLVLGNEHKGMRPGVAKKCETVVSIPLQRQFDSLNVAQAGAILISEFLRQR 243


>gi|261337350|ref|ZP_05965234.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
 gi|270277727|gb|EFA23581.1| tRNA/rRNA methyltransferase [Bifidobacterium gallicum DSM 20093]
          Length = 293

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 105/277 (37%), Gaps = 28/277 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     +++               +  AL      +  L+  +      D  A +  
Sbjct: 17  YVNLTELQLRNKLEPSKGLFIAESPKVIDRALAAGREPLSLLVEEQWIDGMGDEFAFIDE 76

Query: 90  ----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 PV      T+ K+ G       LA      L    D  RN+  + VL++V D  
Sbjct: 77  HWGPDIPVYIGSEATLHKLTGYRLHRGALAAMRRWPLPSVEDVCRNATRVAVLENVVDHT 136

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR------------IS 193
           N+GAI+RSA A   D ++ T   +       A+ + G +  +P+ R             +
Sbjct: 137 NVGAIMRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQVPWTRIGGEGDVRTADKHA 196

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKGLR 241
                L+++H  GF T+ ++        QE++             DK+ALI G EG GL 
Sbjct: 197 WPEAGLEQLHGLGFTTVAMALTDDSISMQELERRLRSDPLERDHIDKLALIFGTEGDGLS 256

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             T   A     + M   + +LNV+ ++AVA Y T+ 
Sbjct: 257 HTTIAHADLTVKIPMSHGVDSLNVAASSAVAFYATRK 293


>gi|84496735|ref|ZP_00995589.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84383503|gb|EAP99384.1| putative rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 264

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 99/246 (40%), Gaps = 5/246 (2%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S +++S    +     + G   V  A+   +  +  +  T  A+ R          
Sbjct: 11  KSVRSLSRRS-ARERTGRFVVDGPQGVREAIRYAAPLVDDIYVTAEAIERHQDLIAAAQD 69

Query: 91  FPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNI 147
             +         +  +   E+  QG+    A         +  +  L+++L +V DP N 
Sbjct: 70  ADIHLHETDDAVLAAMSDTES-PQGVLAVVAAQAHTLEQVLATAPRLVVLLSNVRDPGNA 128

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R A AF  D ++ T       S  + +S  G+L H+P +   ++ + L  + + G 
Sbjct: 129 GTVIRGADAFGADAVLVTDGSVDVLSPKVVRSTVGSLFHLPVVTGLDVNETLDALAAHGI 188

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +T          L     +   A ++G E  GL  + ++    +  + +   +++LN++ 
Sbjct: 189 RTYAADGVGTTLLPDVDVSQPHAWVMGNEAWGLPAEIRDRCNDVVRVPIHERVESLNLAM 248

Query: 268 AAAVAL 273
           AA + L
Sbjct: 249 AATICL 254


>gi|290956646|ref|YP_003487828.1| rRNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260646172|emb|CBG69265.1| putative rRNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 276

 Score =  188 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 114/276 (41%), Gaps = 19/276 (6%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
             ++   +  ++++Q+         + +   + GV  ++ A+ +       L      L+
Sbjct: 3   VQRISTRNARFQQLQTLLNNRTKRGRAKEFLVQGVRPITMAVEHGWTVRSLLYDASRPLS 62

Query: 80  RLDWDANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNS 132
           R  W  +L      + V   PQ + ++  K       A E   ++    D++     R+ 
Sbjct: 63  R--WAEDLLRGVGAERVAMEPQLLAELSEKADG----AAEVLAVVEMAPDSLSRIKVRDD 116

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +V D    P NIG+I+RSA AF   G+I T   +        ++++G+   +P +R 
Sbjct: 117 FLGLVFDRPTQPGNIGSIVRSADAFGASGLIVTGHAADPYDPKSVRASTGSFFAVPVVRS 176

Query: 193 SNLTDALQKM---HSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +  + ++ +    + G     +G   D    + +      + L++G E  GL    +E 
Sbjct: 177 QSHHEVMEWLEKERAQGRPVAVVGTDEDGDAEVSEFDLTQPVLLLIGNETAGLSSAWREL 236

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
              +  + M G   +LN SNAA+V LY  +    AK
Sbjct: 237 CDQVISIPMTGSASSLNASNAASVVLYEARRQRLAK 272


>gi|82699065|ref|YP_413639.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|189023403|ref|YP_001934171.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|237814620|ref|ZP_04593618.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
 gi|254696574|ref|ZP_05158402.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731487|ref|ZP_05190065.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 4 str.
           292]
 gi|260546424|ref|ZP_05822164.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260759230|ref|ZP_05871578.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760952|ref|ZP_05873295.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|82615166|emb|CAJ10105.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|189018975|gb|ACD71697.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|237789457|gb|EEP63667.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus str. 2308 A]
 gi|260096531|gb|EEW80407.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260669548|gb|EEX56488.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671384|gb|EEX58205.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 297

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++ +   +           L  ++   + + + LD V
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRDNLQ--MVAGVFEQQYHQLAGLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  I LI+G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPIILIMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|325982188|ref|YP_004294590.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
 gi|325531707|gb|ADZ26428.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. AL212]
          Length = 274

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 6/259 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVS---AALNNPSRKIFQLLATKNALAR 80
            R+H   K++    + S++  +     L G+H +    + L  P   I       +   +
Sbjct: 6   SRDHPLIKRLIKLEESSQYRKRTGLTLLDGIHLIQIHCSILGKPENLIVSESYFADTDNK 65

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              D    +  P  T+   ++ + +       G+    +          R   L ++L+ 
Sbjct: 66  HFMDIIFGYKPPKITIVGDSLFRAISPVKTPTGILALISKPALQGNTHTRKEVLSVLLET 125

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G+ILRSA A +   I  +K  + + S    ++A GA   +     SNL    Q
Sbjct: 126 IQDPGNLGSILRSAAAANASHIYLSKHCADAWSPKTLRAAMGAHFFLHIYENSNLKQIAQ 185

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +        I  S  + K L +       A + G EG GL  +  + A     + MPG  
Sbjct: 186 QFPG---TVIATSIQATKNLFEISLAGPTAFLFGNEGAGLSAEMIQAAHLNIAITMPGKT 242

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+ AAA+  +     
Sbjct: 243 ESLNVAAAAAICFFEKVRQ 261


>gi|225626689|ref|ZP_03784728.1| RNA methyltransferase [Brucella ceti str. Cudo]
 gi|254713278|ref|ZP_05175089.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M644/93/1]
 gi|254716369|ref|ZP_05178180.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M13/05/1]
 gi|256158847|ref|ZP_05456704.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti M490/95/1]
 gi|256254228|ref|ZP_05459764.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94]
 gi|260169726|ref|ZP_05756537.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99]
 gi|261218151|ref|ZP_05932432.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261221377|ref|ZP_05935658.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261321001|ref|ZP_05960198.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261759264|ref|ZP_06002973.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265997338|ref|ZP_06109895.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|225618346|gb|EEH15389.1| RNA methyltransferase [Brucella ceti str. Cudo]
 gi|260919961|gb|EEX86614.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|260923240|gb|EEX89808.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261293691|gb|EEX97187.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|261739248|gb|EEY27244.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|262551806|gb|EEZ07796.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
          Length = 297

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L  ++   + + + LD V
Sbjct: 94  ARTFAKDGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLAGLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  + LI+G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|256788794|ref|ZP_05527225.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289772688|ref|ZP_06532066.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289702887|gb|EFD70316.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 282

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 101/261 (38%), Gaps = 10/261 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           + R  +   +     R+    E LFL  G   V  A       + +L AT  A  R    
Sbjct: 10  SPRSPRVAAARRLGKRNFRGKERLFLAEGPQAVREA-AGYGDTLVELFATVEAAERYADI 68

Query: 85  ANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                     V       I+ I       QGL      L +P  + +    +L+ VL HV
Sbjct: 69  VGAAREVGARVHLAADAVIEDI-STTVTPQGLVGVCRFLDTPFDEILAARPKLVAVLAHV 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N G +LR A A   + ++ T       +    +++ G+L H+P      +  A+  
Sbjct: 128 RDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVERAVAG 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           +   G + +      +  L+ E+         A + G E  GL  +T+    ++  + + 
Sbjct: 188 LREAGVRVLAADGAGEDDLDTELDGGTMRGPTAWVFGNEAWGLPEETRALTDAVLRVPIH 247

Query: 258 GIIKALNVSNAAAVALYITQN 278
           G  ++LN++ AAAV LY +  
Sbjct: 248 GKAESLNLATAAAVCLYASAR 268


>gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 286

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 10/260 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++  QK +H  +  +    G+  V  AL+   R I  L+  K A  +   +  
Sbjct: 24  NPIIKDIRALAQK-KHRDETRSFIAEGLKLVIDALDLGWR-IRTLVYAKAAKGKPQVEQV 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHV 141
                     V  V  + I  I  ++   Q +         P  D   R  +  + LD V
Sbjct: 82  AAKTVARGGLVLEVSEKVISAITRRD-NPQMVIGIFEQRYQPLKDIHPREGETYVALDRV 140

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    GI+     +   S    ++  G++  +P  R +N  D L+ 
Sbjct: 141 RDPGNLGTIIRTADAAGASGIVLVGETTDPFSLETVRATMGSVFAMPLAR-ANAEDFLRW 199

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             + G Q +               N   + L++G E  GL  +    A ++A +   G  
Sbjct: 200 QRAAGVQVVATHLAGSVDYRTIDYNSKPVVLLMGNEQAGLPVELAREAGALARIPQSGRA 259

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN++ A  + L+  + H 
Sbjct: 260 DSLNLAIATGIMLFEARRHL 279


>gi|119192340|ref|XP_001246776.1| hypothetical protein CIMG_00547 [Coccidioides immitis RS]
          Length = 495

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 118/304 (38%), Gaps = 79/304 (25%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-------WDANLPHPFPVKTVPP-- 98
           + F+YG H V +A+    RKI+ L   +    +L            +     VK V    
Sbjct: 138 SEFIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEW 197

Query: 99  -QTIDKIVGKEAVHQGLALETAPLLS---------------------------------- 123
            Q + ++  KE  HQG+  E +PL                                    
Sbjct: 198 SQALSRVC-KEVNHQGIVAEVSPLPKLPALSYEQVASLPVTNFNVKVAPQSKEEAAVNGT 256

Query: 124 ---PTLDAVRNS-------------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                L ++R +                ++LD + DPHN+GAILRSA  F  D +  + R
Sbjct: 257 SGLIPLTSLRQNSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSR 316

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL------SSDSK---- 217
            S   S V+ KS+SGA EHIP I I +    +      G++          + DSK    
Sbjct: 317 NSAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNI 376

Query: 218 ---KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-----HMPGIIKALNVSNAA 269
              K L  E++N    L+LG EG GL  + +  A +   +     H+   + +LNV+ A+
Sbjct: 377 VSSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVAS 436

Query: 270 AVAL 273
            +  
Sbjct: 437 GILC 440


>gi|158317422|ref|YP_001509930.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
 gi|158112827|gb|ABW15024.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
          Length = 332

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 119/305 (39%), Gaps = 41/305 (13%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           +++  +I ++ D    ++     DY  +     + R           G   +  AL    
Sbjct: 31  EERERRIVAIDDPADPRVE----DYVALTDVALRRRREPAEGLFIAEGERVIDRALRAGY 86

Query: 66  RKIFQLLATKNAL-----------------------------ARLDWDANLPHPFPVKTV 96
           R    +L +   L                                  +    H  PV   
Sbjct: 87  RP-RSVLVSPARLGGVPEGFWSTPTHGGHGECGGHGESAGHDEHSGRERPDHHEAPVYVA 145

Query: 97  PPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            P  + +I G E VH+G        PLL+P ++ +R ++ ++V + +    N+GAI RSA
Sbjct: 146 GPAVLAQITGFE-VHRGALASMCRRPLLNP-VELLRVARRVLVCEDLVSHTNLGAIFRSA 203

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                D ++ + R +        + + G +  +PY R+     AL  +   GF+ + L+ 
Sbjct: 204 AGLGMDAVMLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALSLLGEAGFEVLALTP 263

Query: 215 DSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            S      +      D++AL+LG EG+GL  +   TAT    + M   + +LNV+  AA+
Sbjct: 264 ASDADELAVATAGPGDRVALLLGTEGQGLTGEVLATATRRVRIPMAHGVDSLNVAATAAI 323

Query: 272 ALYIT 276
           A Y+ 
Sbjct: 324 ACYVL 328


>gi|295395440|ref|ZP_06805639.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971762|gb|EFG47638.1| TrmH family rRNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 330

 Score =  188 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 110/285 (38%), Gaps = 34/285 (11%)

Query: 28  RDYKKMQSFNQKSRH--TSQPENLFLYGVHTVSAALNN-----PSRK------------- 67
              K+++   + ++    ++     + G   V  AL +     P R              
Sbjct: 44  PQSKRLREAAKLTKRSWRTKMGRFIVEGPQAVREALTHQATNKPHRATVGVEDGQTRSRP 103

Query: 68  ---IFQLLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
              I  + AT +A  R     +       P++      + ++       Q +      + 
Sbjct: 104 TGAILDVWATSDAAERHPDILEHAQAANIPIREATSAALAELTDT-VTSQDIVAIVEHID 162

Query: 123 SPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +    A+ ++S+L++VL  V DP N G +LR A A   D +I T       +    ++ +
Sbjct: 163 TELPQAITKDSKLVVVLSQVRDPGNAGTVLRVADAAGADSVIFTNSSVDVYNPKTVRATA 222

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE------IKNDKIALILGA 235
           G+L H+P +    L + ++   + G Q +   +                 +   A + G 
Sbjct: 223 GSLFHLPVVTGVGLPEVVELARARGLQVLAADAHPPAHDLHVPWDTGLDLSQPTAWVFGN 282

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279
           E  GL  K ++ A S   + + G  ++LN++ AAAV LY   +NH
Sbjct: 283 EAWGLPEKDRKQADSAVAIPLYGQAESLNLATAAAVCLYESARNH 327


>gi|300718026|ref|YP_003742829.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299063862|emb|CAX60982.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 345

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 90/245 (36%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 102 RRQRLEETRVYGENACQALFQSRPDCIVRAWFVQEVTPRFREALKWMAANRKAYHVVDEA 161

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+       +    S  L        ++ L+ + +PHN+G ++RS  
Sbjct: 162 ELVKASGTE-HHGGVCFLIKKRVGMPVSEWLSNAGEKDCVVALEQIGNPHNLGGMMRSCA 220

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I   +  + L      G+  +  SS 
Sbjct: 221 HFGAKGLLVDDA-SLLESGAAVRTAEGGAEHVQAISGESFAEGLNAFRKAGYTIVTTSSH 279

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL Q     K  L+LG E  GL   T +       +   G +++LNVS A  + L  
Sbjct: 280 KGTPLAQAELPAKTVLVLGQERDGLSDSTWQQGDLSVSIGGTGNVESLNVSVATGILLAE 339

Query: 274 YITQN 278
           +  QN
Sbjct: 340 WWRQN 344


>gi|119505868|ref|ZP_01627933.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2080]
 gi|119458296|gb|EAW39406.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2080]
          Length = 255

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 9/247 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNA---LARLDWDANLPHPFP 92
           + +S   ++ + L +YG + V  AL++P+    +L  AT N      +    A+      
Sbjct: 2   SDRSSLENRHQILTIYGRNAVFEALSDPTIACLRLHWATSNQKSPATKRILQASEARGID 61

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-----LLMVLDHVNDPHNI 147
           V+    +T+ +I       QG+AL+       + D +++S       ++ LD + +P N+
Sbjct: 62  VREHTRKTLSRISRNGKQDQGVALDITCEKFSSFDELKDSLSTSSLRILALDGITNPQNV 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+RSAVA   D I+  K+   +   ++ K+++G +   P I   +L  AL+++   G 
Sbjct: 122 GMIIRSAVAGGIDAILYPKKGVATLGPLVIKASAGIVFKAPIIPCDSLAPALEQLQIGGA 181

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
               L  +S   L        +  +LG E  G+  +    A    H+ M   +++LNV+ 
Sbjct: 182 AIATLEGNSATSLFTYRPAKSVVYVLGGESDGVSSQVSNLADIKLHIPMGSGVESLNVAV 241

Query: 268 AAAVALY 274
           AA++  Y
Sbjct: 242 AASLVAY 248


>gi|227530112|ref|ZP_03960161.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
           49540]
 gi|227349968|gb|EEJ40259.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus vaginalis ATCC
           49540]
          Length = 288

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 111/269 (41%), Gaps = 20/269 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++           QP          +  AL    +    LL  K AL R   D +   
Sbjct: 18  YVRLNEAQLFHALEPQPGLFIAESPKVIERALRAGYQP-ASLLIEKKALDRDLADLDHEM 76

Query: 90  PF---------PVKTVPPQTIDKIVGKEAVHQGLALE---TAPLLSPTLDAVRNS-QLLM 136
                      P+  V  + + ++ G   +   LA       P L+  L  +  +   + 
Sbjct: 77  AINQTSGLGQTPIYVVSSELLSQLSGYNLLRGALAAMHRVKRPDLASFLATMPKAHPRIA 136

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--- 193
           VL+ V +P NIGAI RSA A   DG++ T   +       ++ + G +  +P+  +    
Sbjct: 137 VLESVVNPTNIGAIFRSAAALGIDGVVVTSDSADPFYRRASRVSMGTVFQVPWTYVDAKL 196

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATS 250
              + +  +H  G++T  ++   +   ++    +  DK+A+ILG+EG GLR KT   +  
Sbjct: 197 WQAEGISLLHRLGYKTAAMALRHNTVNIDDPQLDQVDKLAIILGSEGPGLREKTIAQSDF 256

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   + +LNV+ A+A+A +   N 
Sbjct: 257 TIKIPMAPGVDSLNVAAASALAFWELGNR 285


>gi|262201234|ref|YP_003272442.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262084581|gb|ACY20549.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 284

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 10/258 (3%)

Query: 30  YKKMQSFNQKSRHTSQPEN------LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++ + S +++    + P        +   GV      + +        L     LA LD 
Sbjct: 22  FRDLNSVDRRPDLPALPGGRPGKGLVIAEGVLVAQRMIASRFTP-HAFLGVDKRLAELDA 80

Query: 84  DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           D   P     P      + +  +VG       LA+   P +    + + N++ + +L+ V
Sbjct: 81  DLRTPSVSGVPFYRASAEVMAAVVGFHLNRGVLAVARRPPVRTVDEILANARSVAILEGV 140

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           ND  NIG+I R+A     D ++     +        + + G    +P+ R       L  
Sbjct: 141 NDHENIGSIFRNAAGLGIDAVLFGAGCADPLYRRCVRVSMGHALLVPFARFDEWPRGLDA 200

Query: 202 MHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + + GF+ I L+ D +  PL Q ++  K+  ++GAEG GL           A + M    
Sbjct: 201 LRAGGFRLISLTPDPAAMPLAQAVEATKVGFLVGAEGPGLSAHAMAATDVRARIPMSRGT 260

Query: 261 KALNVSNAAAVALYITQN 278
            +LNV+ AAA+A Y    
Sbjct: 261 DSLNVATAAAIAFYERAR 278


>gi|120404299|ref|YP_954128.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119957117|gb|ABM14122.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 248

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 5/240 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +     +       G + V AAL      + ++ AT+ A A+    A L     V  V  
Sbjct: 9   RHTGRRRAARFLAEGPNLVEAALRRG--LVHEVFATEGAAAKF---AALLGAASVHLVTD 63

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    +         +A+ + P          N +L+ V   +++P N G ++R A A  
Sbjct: 64  KAAKALSDTVTPVGLVAVCSIPEADLDQVLAGNPKLVAVPVGISEPGNAGTLIRVADAMG 123

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++         +    ++++G++  IP +   +   A+ K+   G Q +    D   
Sbjct: 124 ADAVVLAGDSVDPYNGKCLRASAGSIFSIPVLSAPDAVAAVTKLKDAGLQVLATVLDGPV 183

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            LE    +   A + G E  GL       AT+   + MPG  ++LNV++AAA+ LY +  
Sbjct: 184 SLEDADLSVPTAWLFGPEAHGLPADVAGLATAGVRIPMPGNAESLNVASAAAICLYQSAR 243


>gi|291557091|emb|CBL34208.1| rRNA methylases [Eubacterium siraeum V10Sc8a]
          Length = 262

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 103/255 (40%), Gaps = 6/255 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K+ +   ++ ++  Q       G      A+ +          T  A  +   
Sbjct: 5   SKQNTYIKEYRKLTEQRKYRRQTGYFVCEGAKLAVEAVKSGCALGENAYYTAAAAEKYPE 64

Query: 84  -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHV 141
             + L     +  +  +  D I   ++  QG+ +    L     L  + +S+  ++L+++
Sbjct: 65  CISLLRESCKMVQISEEVADSISDTKS-PQGIFITVRHLDKILNLSTIDSSRQFIILENL 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  NIG I+RS  AFS DG+I     +   +    +SA G+L  +P     +  +A+  
Sbjct: 124 QDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPIYCC-DTEEAITL 182

Query: 202 MHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   GF       SD    L +E    K A+++G EG G+    ++       + +    
Sbjct: 183 LQKGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTVKKLCDKSLFIPIS-SA 241

Query: 261 KALNVSNAAAVALYI 275
           ++LN S AA+V  + 
Sbjct: 242 ESLNASVAASVIAWE 256


>gi|254718366|ref|ZP_05180177.1| tRNA/rRNA methyltransferase (SpoU) [Brucella sp. 83/13]
 gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
 gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
          Length = 297

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L +++   + + + LD V
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLASLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  + L++G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|29349921|ref|NP_813424.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341832|gb|AAO79618.1| putative rRNA methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 266

 Score =  188 bits (478), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R         +     +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPDKGIFIVESPKVIERALDAGYEPLAILCEHKHITGDASNIIERCGNVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P +    +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGSRELLATLTGYVLTRGVLCAMRRPAVRSMAEVCREARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +     +L  +   GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMD---GSLSDLGKLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D+   ++  +     ++A+++G EG GL P+T   A  +  + M   + +LN
Sbjct: 197 ALTDNSVSIDDPVLATEPRLAIVMGTEGDGLSPETIAEADYVVRIPMSHGVDSLN 251


>gi|304398699|ref|ZP_07380571.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
 gi|304353910|gb|EFM18285.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. aB]
          Length = 394

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 151 RRQRNEETRVYGENACQALFQSRPEAIVRAWFIQEVTPRFRESLRWLAANRKAYHVVEDA 210

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            I K  G E  H G+       +    S  L        ++ L+ V++PHN+GAI+RS  
Sbjct: 211 EITKASGTE-HHGGVCFLIKKRMGMAVSEWLSQATTKDCVLALEDVSNPHNLGAIMRSCA 269

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I  +  ++ L+     G+  +  SS 
Sbjct: 270 HFGVKGLLVNDA-SLLESGAAVRTAEGGAEHVQAISGATFSEGLEAFRKAGYTIVTTSSH 328

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL Q    +K+ L+LG E +GL     +       +   G +++LNVS A  V L  
Sbjct: 329 QGTPLAQAKLPEKMVLVLGQEREGLSDTAFKQGDMSLSIGGTGNVESLNVSVATGVLLAE 388

Query: 274 YITQN 278
           +  QN
Sbjct: 389 WWRQN 393


>gi|291530276|emb|CBK95861.1| rRNA methylases [Eubacterium siraeum 70/3]
          Length = 262

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 103/255 (40%), Gaps = 6/255 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K+ +   ++ ++  Q       G      A+ +          T  A  +   
Sbjct: 5   SKQNTYIKEYRKLTEQRKYRRQTGYFVCEGAKLAVEAVKSGCALGENAYYTAAAAEKYPE 64

Query: 84  -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHV 141
             + L     +  +  +  D I   ++  QG+ +    L     L  + +S+  ++L+++
Sbjct: 65  CISLLRESCKMIQISEEVADSISDTKS-PQGIFITVRHLDKILNLSTIDSSRQFIILENL 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  NIG I+RS  AFS DG+I     +   +    +SA G+L  +P     +  +A+  
Sbjct: 124 QDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPIYCC-DTEEAITL 182

Query: 202 MHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   GF       SD    L +E    K A+++G EG G+    ++       + +    
Sbjct: 183 LQKGGFTVYSAELSDRSVKLGEEKLPQKTAVVIGNEGNGVSDTVKKLCDKSLFIPIS-SA 241

Query: 261 KALNVSNAAAVALYI 275
           ++LN S AA+V  + 
Sbjct: 242 ESLNASVAASVIAWE 256


>gi|282896219|ref|ZP_06304242.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
 gi|281198908|gb|EFA73786.1| tRNA/rRNA methyltransferase (SpoU) [Raphidiopsis brookii D9]
          Length = 263

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 107/272 (39%), Gaps = 18/272 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIF 69
           + SL++    ++R+ H            ++   + +   L G H ++ A  +N P   + 
Sbjct: 2   LTSLQNPLVKQIRKLH-----------SAKERHKQQLFVLEGTHLIAEACSVNYPLETVC 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             +  +N+ + L W         V+ V  + +  +        G+            + +
Sbjct: 51  CTIDWQNSHSEL-WQNVCNACHRVEIVSQEVLAAMA-TTVQPDGVVAMVKRCEE---NPI 105

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L + L+ + DP N+G I+R+A A    G+  +      +   + ++++G    +  
Sbjct: 106 PITGLALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKK 165

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               NL D +Q     G Q +     ++    Q   +    ++LG EG GL       A 
Sbjct: 166 QVSHNLKDTVQDCQRGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDDLATMAN 225

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + +   +++LNV+ +AA+ LY  Q   A
Sbjct: 226 IQVKIPLSPQVESLNVAISAALILYEAQRQKA 257


>gi|167751467|ref|ZP_02423594.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
 gi|167655275|gb|EDR99404.1| hypothetical protein EUBSIR_02463 [Eubacterium siraeum DSM 15702]
          Length = 262

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 103/255 (40%), Gaps = 6/255 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K+ +   ++ ++  Q       G      A+ +          T  A  +   
Sbjct: 5   SKQNTYIKEYRKLTEQRKYRRQTGYFVCEGAKLAVEAVKSGCALGENAYYTAAAAEKYPE 64

Query: 84  -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDHV 141
             + L     +  +  +  D I   ++  QG+ +    L     L  + +S+  ++L+++
Sbjct: 65  CISLLRESCKMVQISEEVADSISDTKS-PQGIFITVRHLDKILNLSTIDSSRQFIILENL 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  NIG I+RS  AFS DG+I     +   +    +SA G+L  +P     +  +A+  
Sbjct: 124 QDMGNIGTIIRSCDAFSIDGVILAGDCADVFAPKTVRSAMGSLFRLPIYCC-DTEEAITL 182

Query: 202 MHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   GF       SD    L +E    K A+++G EG G+    ++       + +    
Sbjct: 183 LQKGGFTVYSAELSDRSVRLGEEKLPQKTAVVIGNEGNGVSDTVKKLCDKSLFIPIS-SA 241

Query: 261 KALNVSNAAAVALYI 275
           ++LN S AA+V  + 
Sbjct: 242 ESLNASVAASVIAWE 256


>gi|297624394|ref|YP_003705828.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297165574|gb|ADI15285.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 276

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 93/238 (39%), Gaps = 6/238 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA----NLPHPFPVKTVPPQTIDKI 104
             + G   V+ AL    R + +L      L                  V  + P     +
Sbjct: 38  FLVEGTREVTRALE-AGRALERLYVCPERLRDEGRALVARCQAEGAASVTELSPAAFRVL 96

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             +EA    +AL    L +     +    L++V+D +  P N+GA+LR+A       +  
Sbjct: 97  SHREAPDGVIALVRTALTTLRDLQLAADALVLVVDGLEKPGNLGALLRTADGVGAAAVFA 156

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T   +  E+  + +S+ G++  +P +R     + L  + + GF+ +  +  +        
Sbjct: 157 TGAGTDFENPNVIRSSMGSVFSLPTLRAP-AAELLAWLRAQGFRLVAATPHADTLFWDAP 215

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              + AL+LG E  GL     E A     + M G+  +LNV+ A A+ LY       +
Sbjct: 216 YTGRTALLLGTEHDGLSALWLEAADVRVTIPMGGLADSLNVATAGALLLYEALRQRRR 273


>gi|254388527|ref|ZP_05003761.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326442462|ref|ZP_08217196.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197702248|gb|EDY48060.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 316

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 111/291 (38%), Gaps = 39/291 (13%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF-- 69
           S +  H      N +   K  +    +R   +  +  + G + V  AL +  P+  ++  
Sbjct: 40  SARKGHVKNRVANAKA--KQSARRPVARRGGKGSSEMVVGRNPVFEALRDGVPATTLYVQ 97

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           Q +     +      A       +   P   +D++ G    HQGL L+  P      + +
Sbjct: 98  QFIENDERVRDALQLATGRGTINIMEAPRPELDRMTG-GLNHQGLVLQVPPYEYAHPEDL 156

Query: 130 -------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                      L++ LD V DP N+GA++RS  AF   G++  +R +   +A   K+++G
Sbjct: 157 AASAADHGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAG 216

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG----- 237
                P  R +NLT AL+     G   +GL++D +  +               E      
Sbjct: 217 TAARTPVARATNLTRALESYQKAGLTVVGLAADGEHEVGDL------------EALGGPV 264

Query: 238 --------KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   KGL     ET   +  + MPG  ++LN   AA V LY      
Sbjct: 265 VVVVGSEGKGLSRLVGETCDFLVRIPMPGGAESLNAGVAAGVVLYEAARRR 315


>gi|227504260|ref|ZP_03934309.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
 gi|227199147|gb|EEI79195.1| rRNA methylase [Corynebacterium striatum ATCC 6940]
          Length = 270

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 108/254 (42%), Gaps = 9/254 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           ++      ++     E L +   H V + L      +  ++   + L     +   P   
Sbjct: 12  RLDDVRDLNKSDKSGEGLVIAEGHLVVSRLAESRFPLRCIVGFGSKLDAYVEEYGDP-GC 70

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAI 150
           P+  V  +T+ ++ G + +H+GL         PTL+  +R ++ ++VL+ V D  NIGAI
Sbjct: 71  PMYEVTRETLAQVAGFD-MHRGLVAAADRAAEPTLEEILRTAKTVVVLEGVGDHENIGAI 129

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR----ISNLTDALQKMHSWG 206
            R+A     D ++     +        + + G +  +P+       +    +LQ +    
Sbjct: 130 FRNAAGMDVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLDGGYTTWQRSLQVLRDAN 189

Query: 207 FQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           F+ + L+   +     +  +   K+AL++GAEG GL     +     A + M     +LN
Sbjct: 190 FRLVSLTPHPEAVHLAQALHGAEKVALLVGAEGPGLTEHAMKATDVRARIPMAPGTDSLN 249

Query: 265 VSNAAAVALYITQN 278
           V+ +AA+A Y  Q 
Sbjct: 250 VATSAAIAFYERQR 263


>gi|303312903|ref|XP_003066463.1| RNA methyltransferase, TrmH family, group 3 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106125|gb|EER24318.1| RNA methyltransferase, TrmH family, group 3 containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 495

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/304 (25%), Positives = 116/304 (38%), Gaps = 79/304 (25%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-------WDANLPHPFPVKTVPP-- 98
           + F+YG H V +A+    RKI+ L   +    +L            +     VK V    
Sbjct: 138 SEFIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEW 197

Query: 99  -QTIDKIVGKEAVHQGLALETAPLL----------------------------------- 122
            Q + ++  KE  HQG+  E +PL                                    
Sbjct: 198 SQALSRVC-KEVNHQGIVAEVSPLPKLPALSYEQVASLPVTNFNVKVAPQSKEEAAVNGT 256

Query: 123 ----------SPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                       + D  R          ++LD + DPHN+GAILRSA  F  D +  + R
Sbjct: 257 SGLIPLTSLRQDSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSR 316

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL------SSDSK---- 217
            S   S V+ KS+SGA EHIP I I +    +      G++          + DSK    
Sbjct: 317 NSAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNI 376

Query: 218 ---KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL-----HMPGIIKALNVSNAA 269
              K L  E++N    L+LG EG GL  + +  A +   +     H+   + +LNV+ A+
Sbjct: 377 VSSKNLPNELQNYPCVLMLGNEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVAS 436

Query: 270 AVAL 273
            +  
Sbjct: 437 GILC 440


>gi|217970565|ref|YP_002355799.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
 gi|217507892|gb|ACK54903.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
          Length = 277

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 11/261 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            R++   K++ +    +R   + +   L G H V +AL      +  L+ +++ L R + 
Sbjct: 11  SRDNAFVKRLHALAHSARDRRKLDETVLDGAHLVESAL-AAGVALRALVVSESGLLREEH 69

Query: 83  --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               A  P   P   +       +   ++    LA    P  +P+  A  ++ L++V D 
Sbjct: 70  RRLLAAAPAEVPRYRLGDALFAHVSPVDSPAGLLATIAMPASTPS--APGDASLIVV-DG 126

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G++LR+A A      +  +  + + S    ++  GA      +RI    + L 
Sbjct: 127 VQDPGNLGSLLRTAAAAGIRHALLGEGCAQAWSPRALRAGMGAQF---VVRIEEGCELLA 183

Query: 201 KMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           ++ S+    +  +  +   PL +      +A + GAEG+GL P     A     + M   
Sbjct: 184 RLESYPGLCLATALREDAHPLYELDLRGPVAWLFGAEGQGLSPALLARADGCVIIPMTAG 243

Query: 260 IKALNVSNAAAVALYITQNHF 280
           I++LNV+ AAAV L+      
Sbjct: 244 IESLNVAAAAAVCLFEQARQL 264


>gi|294672913|ref|YP_003573529.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294472688|gb|ADE82077.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 247

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 98/256 (38%), Gaps = 20/256 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K + +  QKS    +     + G   +          + + +  KN         
Sbjct: 10  QNAKIKHVVALQQKSSLRREEGLFVVEGQREIEHCKACGYEVVEEYIRDKN--------- 60

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     V PQ  +K+  + +    +A+      +     ++ S L++VL+ V  P 
Sbjct: 61  ----------VSPQVYEKMAYRGSTEGHIAVVRCKEHTLEKLQLKESPLIVVLESVEKPG 110

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILRSA A   D +I     +   +  + +++ G +  +P    S+  + +  +   
Sbjct: 111 NLGAILRSAEAAGIDALIVCDPLTDMYNPNVIRASIGGVFCVPTAVCSS-QECIAFLKEH 169

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + +                   A+++G E  GL  + +E A +   + M G + +LNV
Sbjct: 170 GIKILTAQLQDSYEYYDYDMTQGTAIVMGTESTGLTNQWREAADAHIRIPMLGRLDSLNV 229

Query: 266 SNAAAVALYITQNHFA 281
           S +AA+ +Y       
Sbjct: 230 SVSAAILMYEAVRQRN 245


>gi|322390078|ref|ZP_08063613.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
 gi|321143205|gb|EFX38648.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 903]
          Length = 181

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 87/184 (47%), Gaps = 5/184 (2%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           + P+ +  ++      QG+  E A       D ++   L   L+ V DP N+G ++R+A 
Sbjct: 1   MTPEILS-LLADSKTPQGIVAEIALEQPVLPDQLQGRYLY--LEDVQDPGNVGTMIRTAD 57

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-S 214
           A   DG++ +K  +   S    +S  G+  HIP  ++    + L++        +  + S
Sbjct: 58  AAGFDGVMLSKASADLYSLKTLRSMQGSHFHIPIWKLDR-EELLERATQSHLAVLATTLS 116

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++     Q  + D+  L++G EG G+  +    A  + H+ MPG  ++LNV+ AA + ++
Sbjct: 117 EASIDYRQLPQTDRFILVMGNEGNGISQEMATQADQLVHIPMPGRAESLNVAVAAGILMF 176

Query: 275 ITQN 278
             + 
Sbjct: 177 SLRK 180


>gi|196006710|ref|XP_002113221.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
 gi|190583625|gb|EDV23695.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
          Length = 267

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 63/263 (23%), Positives = 108/263 (41%), Gaps = 27/263 (10%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LARLDWDANLPHPFPVKTVPPQT 100
            +   +YG+     AL    RKI+ +     A        ++          +  +P   
Sbjct: 5   EDREIIYGIAPCQLALKADRRKIYHIYVRDPAGTLKPNKSIEHIIFKARKLGIHVLPSDK 64

Query: 101 --IDKIVGKEAVHQGLALETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +DK+  +   HQG+A++  PL        L  T  A     L + L+ V DP N+GA+
Sbjct: 65  RYLDKLT-EGRPHQGVAMKATPLRPNLIRHDLDKTAMANNRKALWLGLNDVQDPMNLGAL 123

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A     + ++   R +   SAV++K+++GA+E  P   + NL+  L  +    +  I
Sbjct: 124 IRTAALMGVNRVVVNSRKTARLSAVVSKASAGAMEVYPIYAVKNLSKYLDYLVENDWNII 183

Query: 211 GLSSDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHLHM----PGI 259
           G     +    Q +             L+LG EG G+    +E   S   +      P  
Sbjct: 184 GTVGHKEVNQYQAMSCQNFNHNGKPTILMLGNEGFGISASIKEKCNSFLTIPTSSSCPPD 243

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
           I +LNVS AA + LY  +    +
Sbjct: 244 IDSLNVSVAAGILLYSLRGRLNR 266


>gi|283781122|ref|YP_003371877.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283439575|gb|ADB18017.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 278

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 26/260 (10%)

Query: 40  SRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
            R+ +Q   LF+  G   V   + + S  +  LLA  +   R  +   +P   P+  V  
Sbjct: 22  RRNLAQHSGLFIVEGDKLVDRLITS-SFAMHSLLAEPDMAER--YATQVPAEVPIYVVDR 78

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----------------LLMVLDHVN 142
            T+   +G    H+G+         PT++ +  +                 L++VL  V 
Sbjct: 79  ATLQATIGFN-FHRGILGCGYRREQPTVEQLLTTPPTVAQVTAGRAADIGNLILVLAEVQ 137

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G+ILRSA AF C G++   R +   +  + + + G+   IP    SNL   L+ +
Sbjct: 138 DPTNLGSILRSAAAFGCRGVVLGPRCADPFARRVIRVSMGSALTIPITVSSNLACDLESI 197

Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              G+Q      SD  K L     +   AL+LG+EG GL P+          + M     
Sbjct: 198 AEKGYQLTATVLSDRAKKLGDLQLDVPRALLLGSEGNGLAPEWIAMCREHVTIPMAWGTD 257

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ AAAV LY    HF+
Sbjct: 258 SLNVAIAAAVLLY----HFS 273


>gi|262368611|ref|ZP_06061940.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
 gi|262316289|gb|EEY97327.1| tRNA/rRNA methyltransferase [Acinetobacter johnsonii SH046]
          Length = 258

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 103/258 (39%), Gaps = 9/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   ++S +  + +   L G H   A +    +K+  +  T+NAL   D 
Sbjct: 8   SKDNPKIKHLRGLIEQSSYRKKQDQTVLEGTHLGLAWVEK-RKKLNSIFTTENALEHPDI 66

Query: 84  -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            D    +   V  +       +         LA+   P  S ++D   +    ++L+++ 
Sbjct: 67  CDILDEYEGAVFVIAESLYRDLSTLGTTLPFLAVVDLPSSSQSVDFSLD---TLILENIQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     +I TK  +   S  + ++  GA   +       + D L++ 
Sbjct: 124 DPGNVGTLLRSAAAAGIKQVICTKGSAALWSPRVLRAGMGAHFSLNTYENVAIEDVLERF 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                     SS   + L Q+        ILG EG+G+       A     +  PG  ++
Sbjct: 184 E---IPVYVTSSHQAESLYQKDLTQACVWILGNEGQGVSDFALAHA-QALSIPQPGGQES 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ A ++  +      
Sbjct: 240 LNVAIAGSICFFEMVRQR 257


>gi|71894373|ref|YP_278481.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
 gi|71851161|gb|AAZ43770.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 233

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 10/229 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           LF+ G ++   A+ +    + ++  +K    +   + N    F V+ +    + K+    
Sbjct: 4   LFIGGKNSTLDAIESKLN-LKRIYLSKKENLKYFKNTN----FKVEILSNLELSKLT-NN 57

Query: 109 AVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           A HQG   E        ++ +     ++++VLDH+ D +N+GAI+RSA A     I+  K
Sbjct: 58  ANHQGFVAEL-DFTYSDINKIYESKPKIVLVLDHIMDTYNLGAIIRSANAAGIKDIVMPK 116

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIK 225
                 ++ + K +SG    I + ++S+L   L K+    +   G   D +         
Sbjct: 117 ENCADITSNVLKVSSGGFIGINFYKVSSLNAFLNKLKKHSYWIYGSMLDKNSTSYYSAKY 176

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           N  +A ILG E KG+            H+   G +++LNVS AA + L+
Sbjct: 177 NFPMAFILGNEEKGISKSALVEVDEKIHIPQSGSVESLNVSVAAGILLF 225


>gi|159038777|ref|YP_001538030.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157917612|gb|ABV99039.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 307

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 105/256 (41%), Gaps = 12/256 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDAN 86
           DY+ +     ++R           G   +  AL    P+R           LA LD    
Sbjct: 54  DYRALTDVELRTRWEPPHGLFIAEGELVLRRALRAGYPARSYLVDAKRVEQLADLDT--- 110

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPH 145
                PV    P  + ++ G   VH+G+         PT  D +  ++ +++L+ VN+  
Sbjct: 111 --GDAPVYAAAPDVLRRVTGFH-VHRGVLASFRRRRQPTATDLLATARRVVILEDVNNHT 167

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I R+      D ++ +   +        + + G +  +PY  +    DAL ++ + 
Sbjct: 168 NLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYAMLGPWPDALAEVRAA 227

Query: 206 GFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF  + L+        Q ++     + AL+LGAEG GL  +  E +     + M   + +
Sbjct: 228 GFTVLALTPAPDAVPIQRLEPGQRSRAALLLGAEGSGLTREAMEASDVRVVIPMRRGVDS 287

Query: 263 LNVSNAAAVALYITQN 278
           LNV+ A AVA +    
Sbjct: 288 LNVAAATAVACWELGR 303


>gi|167754583|ref|ZP_02426710.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
 gi|167705415|gb|EDS19994.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
          Length = 238

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 23/254 (9%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +    QK ++  + +   + G H V+ AL   + ++  L++TK+  + L+    
Sbjct: 7   NSTIKTLMKLKQK-KYRDEMKAYLVEGDHLVTEALK--ANQVELLISTKHIDSELEVLEV 63

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                         + K+       Q +  +        L   +  +  ++LD + DP N
Sbjct: 64  SEE----------VMAKLA-FTKSPQSIMAKCRMQKEIQL---KEGRRYLLLDDLQDPGN 109

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG ++R+A+AFS D +I +       +  L +S  GA  H+  I   NLT  + ++   G
Sbjct: 110 IGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIY-GNLTQLISQLQEKG 168

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              IG + ++ K + Q  +  K+A ++G EG G+ P+       + ++ +   I++LNV+
Sbjct: 169 VVVIGSALENGKNIAQINRYSKMAFVVGNEGNGMNPEVLAKCDDIGYIPI-NTIESLNVA 227

Query: 267 NAAAVALYITQNHF 280
            A  + +Y    HF
Sbjct: 228 IAGGIMMY----HF 237


>gi|256380292|ref|YP_003103952.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
 gi|255924595|gb|ACU40106.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
           DSM 43827]
          Length = 248

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/236 (24%), Positives = 113/236 (47%), Gaps = 5/236 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG   V  AL++P  ++ ++L  + A    A+   DA       V+    Q +  + G 
Sbjct: 12  VYGRKPVLEALDDPRLEVDKVLMAEGARGPAAKEILDAASRRGVRVQRATAQRVKVLAGN 71

Query: 108 EAVHQGLALET-APLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
               QG+  +  AP ++P   A+ +    +++LD +  P N+G ILR+A A   +GI+  
Sbjct: 72  GRHDQGVLADVVAPRMAPLALALESRPRGVLLLDGITTPANVGMILRTATAAGVEGIVVP 131

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R   S   ++ K+++G     P +R     +A  ++ + G+    L + +K+ +     
Sbjct: 132 RRGVASIDPLVVKASAGVAFRAPVLRCGTAAEAAAQLRAAGYPLFALDASAKRSVYAAEL 191

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            ++ A +LG+E  G+    +E  T    + M   +++LNV++AAAV  +      +
Sbjct: 192 PERAAFVLGSETAGVSDGVREHVTDWLSIPMAAGVESLNVASAAAVLCFEVVRRRS 247


>gi|295693354|ref|YP_003601964.1| rRNA methylase [Lactobacillus crispatus ST1]
 gi|295031460|emb|CBL50939.1| rRNA methylase [Lactobacillus crispatus ST1]
          Length = 255

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 9/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H    AL    +K   +L TK AL + D +  +        +  + I
Sbjct: 23  YRDDEGLYLIEGFHLFEEALK-AGKKYQYILGTKEALDQADSNYEVDLSGKNVLLINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + +      Q + +     +    +   N    ++LD++ DP N+G I+R+A A   DG
Sbjct: 82  ARHLSSTKNSQEIFMVLK--IDQPKEFPFNYGKWVLLDNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPL 220
           +I +   +   +    ++  G+  HI  I+  +L D +    +          D S K L
Sbjct: 140 VILSPESADLYNPKTQRAMQGSQFHIDLIK-RDLADVITDFQAAAIPVYASMLDRSAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               K  ++ALI+G E  G+ P     A    ++ + G  ++LN + AA + +Y    HF
Sbjct: 199 PDFEKVPQLALIIGNEAHGVSPTIASLADEKLYIPIKGQAESLNAAVAAGIMIY----HF 254

Query: 281 A 281
           A
Sbjct: 255 A 255


>gi|311894940|dbj|BAJ27348.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 286

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 107/260 (41%), Gaps = 17/260 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAA-----LNNPSRKIFQLLATKNALARLDWDA 85
           +++   NQ+ +           G   V  A     L +    + ++  T  A  R     
Sbjct: 20  RRLAKRNQRGKERR----FLAEGPQAVREAVAFGRLPDGEHAVVEVYVTAEAAERHADIV 75

Query: 86  NLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVN 142
                   PV T   + +  I       QG+      + +P    +    +L+ VL HV 
Sbjct: 76  AAARAAGRPVLTATEEVVADICDT-VTPQGIVALCRFIDTPFEQVLAARPKLVAVLAHVR 134

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N G +LR+A A   D ++ T       +    +++ G+L H+P      + +A+ ++
Sbjct: 135 DPGNAGTVLRTADAAGADAVVLTDASVDPYNPKAVRASVGSLFHLPVATGVPVEEAVARL 194

Query: 203 HSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            + G + +      ++ L+QE+         A + G E  GL  +T+  A ++  + + G
Sbjct: 195 RAAGVRVLAADGAGERDLDQELDQGTLEGPCAWVFGNEAWGLPEETRALADAVVRVPIHG 254

Query: 259 IIKALNVSNAAAVALYITQN 278
             ++LN++ AAAV LY +  
Sbjct: 255 HAESLNLATAAAVCLYASAR 274


>gi|329939002|ref|ZP_08288376.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329301887|gb|EGG45780.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 272

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 11/258 (4%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +I +++D    +L     DY  +     + R           G   +  A          
Sbjct: 3   EIVTVEDPEDPRL----HDYTDLTDVELRRRREPAEGLFIAEGEKVIRRAGEAGYAMRSM 58

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAV 129
           LL+ K      D    L    PV  V P+  +++ G   VH+G LA      L    D +
Sbjct: 59  LLSAKWVEPMRDVIDAL--TVPVYVVDPELAERVTGYH-VHRGALASMRRKPLPAAADLL 115

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R ++ ++V++ VND  NIGAI RSA A   D ++ +   +        K + GA+  +PY
Sbjct: 116 RGARRVVVMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPY 175

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIK--NDKIALILGAEGKGLRPKTQE 246
            R+     +L  +   GF  + L+ D   + L++      D++AL+LGAEG GL  +   
Sbjct: 176 ARLEQWPGSLAAVTEAGFDLLALTPDAGARSLDEAAPHRRDRVALMLGAEGDGLSRRALA 235

Query: 247 TATSMAHLHMPGIIKALN 264
            A     + M   + +LN
Sbjct: 236 AADEPVRIPMSHGVDSLN 253


>gi|302753442|ref|XP_002960145.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
 gi|300171084|gb|EFJ37684.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
          Length = 244

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 24/246 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT----------KNALARLDWDANLPHPFP--VKTVPP 98
           LYG+  V AAL    R ++ L             + ALA + W           V+T   
Sbjct: 3   LYGIGPVRAALQARRRDLYVLYIQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151
             ++ +V     HQG+ L+ +PL    + A+           + + LD V DP N GAIL
Sbjct: 63  HALNVLVD-NRPHQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RS+  F   G++   + S   S V++K+++GALE I  +   N+   L+     G++ IG
Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181

Query: 212 LS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            S S   + L    KN    L+LG EG G+RP     A  +     PG + +LNVS AA 
Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEADCVLR---PGTVDSLNVSVAAG 238

Query: 271 VALYIT 276
           V L+  
Sbjct: 239 VLLHEL 244


>gi|19552052|ref|NP_600054.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62389715|ref|YP_225117.1| 23S ribosomal RNA methyltransferase [Corynebacterium glutamicum
           ATCC 13032]
 gi|145294994|ref|YP_001137815.1| hypothetical protein cgR_0939 [Corynebacterium glutamicum R]
 gi|21323591|dbj|BAB98218.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
 gi|41325050|emb|CAF19531.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Corynebacterium glutamicum
           ATCC 13032]
 gi|140844914|dbj|BAF53913.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 276

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 109/259 (42%), Gaps = 11/259 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDAN 86
           D + +   + +         +   G   V   L +    +  ++  KN L       DA+
Sbjct: 17  DVRDLNHSDSRPDLPGGKGLVVAEGPLVVGRLLESRY-PVRAIVGFKNKLDSFLDSIDAS 75

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPH 145
           L    PV  V  + + ++ G + +H+GL          ++   + N++ ++VL+ V D  
Sbjct: 76  LVEGIPVYEVSRELLAEVAGFD-MHRGLLATADRTEEASVAQVLENARTVVVLEGVGDHE 134

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR----ISNLTDALQK 201
           NIG++ R+A     D I+     +      + + + G +  +P+       +    +L++
Sbjct: 135 NIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPFAHLEGTYTTWQRSLEQ 194

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +   GF  + L+ D +    ++     DK+AL++GAEG GL           A + M   
Sbjct: 195 LKEAGFHLVSLTPDPEAEHLEDALAGKDKVALLVGAEGPGLTEHAMRATDVRARIPMAPG 254

Query: 260 IKALNVSNAAAVALYITQN 278
             +LN++ +AA+A Y    
Sbjct: 255 TDSLNLATSAAIAFYERDR 273


>gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
 gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
          Length = 297

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L +++   + + + LD V
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLASLKPKGNDVYIALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  + L++G E +GL          +A +   G  
Sbjct: 211 RKGFSGLIVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|260565194|ref|ZP_05835678.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260565921|ref|ZP_05836391.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261758764|ref|ZP_06002473.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|260151262|gb|EEW86356.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155439|gb|EEW90519.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261738748|gb|EEY26744.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
          Length = 242

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 14/245 (5%)

Query: 45  QPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTI 101
           + +     G   V   L  ++   +   LL  +N L  L +    LP   PV +VP   +
Sbjct: 3   RQQRFIAEGK-VVLNVLFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIM 61

Query: 102 DKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           D + G   VH+G+      ++ P L   L A+    L++VL  +++  N+G+I R+A AF
Sbjct: 62  DAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAF 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++  +           + + GA   +PY     + D    +   GF  + L+  + 
Sbjct: 121 EADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAP 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + +    ++ AL+LG EG+GL  +  E     A + M     +LNV+ A+ +AL    
Sbjct: 181 RSIYEATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL---- 235

Query: 278 NHFAK 282
           + F+K
Sbjct: 236 SRFSK 240


>gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
           'sapolanicus']
 gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium sp.
           'sapolanicus']
          Length = 267

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 107/286 (37%), Gaps = 26/286 (9%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +IS  +++KI  L           ++ Y        +SR   +     L G   + AA 
Sbjct: 3   EIISSSQNDKIKYL-----------NKLY--------RSRTRRKEGVFVLEGKRLIEAA- 42

Query: 62  NNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           +       ++  +     A    D    L +   +  V  + + +        QG+    
Sbjct: 43  SAGGADFERVFLSPAFFKADKNKDLIDKLQNRVSLDLVSEELLKE-TAATVNPQGIIAIV 101

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                 +    + +  +++LD + DP N+G ++R+A A   + +I  K      +  + +
Sbjct: 102 KEPNYSSEKFFKTADKILLLDRIQDPGNMGTMIRTAAAAGFEAVIALKGSVDIYNQKVIR 161

Query: 179 SASGALEHIPYIRISNLTDALQKMHS--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           ++ G +  IP  +  +  +  + +      F+ +     ++K   +     K+ L++G E
Sbjct: 162 ASMGGIFAIPIWQKVSKNEFKKDLKDRAADFELLAADIKAEKYHFEHQYQQKLILMIGNE 221

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             GL       A     + + G +++LN + AAAV  +       K
Sbjct: 222 ANGLAEDLLNIADMKVKIPLKGEMESLNAAIAAAVISFEILAQQLK 267


>gi|284799730|ref|ZP_05984713.2| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
 gi|284796977|gb|EFC52324.1| RNA methyltransferase, TrmH family [Neisseria subflava NJ9703]
          Length = 263

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 39/288 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +++   +     L GVH +   
Sbjct: 1   MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQTY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALET 118
           L +      Q+   +     ++            +  V  + + KI           L  
Sbjct: 43  LQSGGTP-KQVYLPEKKQQHIEIQEITAQLDEGLITWVGNEALSKITS---------LTD 92

Query: 119 APLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           A  +   +D  + + L      +VL+ V DP N G ILRSA A     I+ +       S
Sbjct: 93  ADDVMTWIDIPQQAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGVRQIVCSNDSVDIWS 152

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232
             + ++  GA   +       L+  ++       Q    +   +   L +   +   A +
Sbjct: 153 PKVLRAGMGAHFLLSIFSRVELSAWMETYQ---HQIWATALGGRNIGLYEMDLSQPCAWV 209

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G EG G+    +E A +   + M G  ++LNV+ AA V L+      
Sbjct: 210 FGNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQR 257


>gi|227501820|ref|ZP_03931869.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227077845|gb|EEI15808.1| TrmH family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 268

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 6/243 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++    + +   + G + V AA++  +     +  T+ A  R            V   P 
Sbjct: 24  RAASRMKAKQFIIEGENAVDAAVSTGAAT--DVFVTEKAAERFADIVTACGYMDVYVHPI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAV 155
                K +   A   G+    +  +  +   + N   +L+ V    ++P N G ++R++ 
Sbjct: 82  TDKAAKHLADTATTTGIFALCSSSVLWSAGKILNGKPKLISVPVLTSEPGNAGTLIRTSD 141

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG+I          + +A++++G+L H+P  R  N+ D L ++   G Q +  ++D
Sbjct: 142 AMGADGVIFAGETVDPLGSKVARASAGSLFHVPVARDPNIKDVLGQLRKSGMQIVATAAD 201

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  L     +   A + G E  GL  +  E A     + + G  ++LN++ AA++ LY 
Sbjct: 202 GEVELADADLSQPTAWLFGNEAHGLG-ELLEEADMRVRIPLRGRAESLNLATAASICLYE 260

Query: 276 TQN 278
           +  
Sbjct: 261 SAK 263


>gi|15841100|ref|NP_336137.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31792831|ref|NP_855324.1| 23S rRNA methyltransferase TsnR [Mycobacterium bovis AF2122/97]
 gi|121637552|ref|YP_977775.1| putative 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148822852|ref|YP_001287606.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
 gi|215411290|ref|ZP_03420098.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426963|ref|ZP_03424882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|218753350|ref|ZP_03532146.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|219557563|ref|ZP_03536639.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|224990027|ref|YP_002644714.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253799316|ref|YP_003032317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           1435]
 gi|254231845|ref|ZP_04925172.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
 gi|254364493|ref|ZP_04980539.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
           Haarlem]
 gi|260186592|ref|ZP_05764066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|260200707|ref|ZP_05768198.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|260204913|ref|ZP_05772404.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289443098|ref|ZP_06432842.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|289447254|ref|ZP_06436998.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|289554581|ref|ZP_06443791.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           605]
 gi|289569691|ref|ZP_06449918.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|289574313|ref|ZP_06454540.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289750192|ref|ZP_06509570.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|289761795|ref|ZP_06521173.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|294996594|ref|ZP_06802285.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis 210]
 gi|297634197|ref|ZP_06951977.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           4207]
 gi|297731184|ref|ZP_06960302.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           R506]
 gi|298525142|ref|ZP_07012551.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306779644|ref|ZP_07417981.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu002]
 gi|306784375|ref|ZP_07422697.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu003]
 gi|306788744|ref|ZP_07427066.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu004]
 gi|306793080|ref|ZP_07431382.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu005]
 gi|306797461|ref|ZP_07435763.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu006]
 gi|306803340|ref|ZP_07440008.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu008]
 gi|306807922|ref|ZP_07444590.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu007]
 gi|306967739|ref|ZP_07480400.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu009]
 gi|313658516|ref|ZP_07815396.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           V2475]
 gi|13881315|gb|AAK45951.1| rRNA methylase, putative [Mycobacterium tuberculosis CDC1551]
 gi|31618421|emb|CAD96339.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis
           AF2122/97]
 gi|121493199|emb|CAL71670.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600904|gb|EAY59914.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis C]
 gi|134150007|gb|EBA42052.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148721379|gb|ABR06004.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis F11]
 gi|224773140|dbj|BAH25946.1| putative 23S rRNA methyltransferase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320819|gb|ACT25422.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           1435]
 gi|289416017|gb|EFD13257.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T46]
 gi|289420212|gb|EFD17413.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis CPHL_A]
 gi|289439213|gb|EFD21706.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           605]
 gi|289538744|gb|EFD43322.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis K85]
 gi|289543445|gb|EFD47093.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T17]
 gi|289690779|gb|EFD58208.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis T92]
 gi|289709301|gb|EFD73317.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis GM
           1503]
 gi|298494936|gb|EFI30230.1| TsnR protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308327413|gb|EFP16264.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu002]
 gi|308330923|gb|EFP19774.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu003]
 gi|308334693|gb|EFP23544.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu004]
 gi|308338535|gb|EFP27386.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu005]
 gi|308342205|gb|EFP31056.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu006]
 gi|308345731|gb|EFP34582.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu007]
 gi|308350031|gb|EFP38882.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu008]
 gi|308354668|gb|EFP43519.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu009]
 gi|323719905|gb|EGB29018.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903259|gb|EGE50192.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis W-148]
 gi|328459067|gb|AEB04490.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis KZN
           4207]
          Length = 260

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 7/243 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V+AAL      + ++  T+ A  R +      H   V  V  +   
Sbjct: 21  RRRAGRFLAEGPNLVAAALARG--LVREVFVTEVAARRHELLLA-AHEASVHLVT-ERAA 76

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K +       GL        +   D +  S  L+ V   + +P N G ++R A A     
Sbjct: 77  KALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAA 136

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R     +    ++++G++  IP +   ++  A+  + + G Q +  + D +  L+
Sbjct: 137 VILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALD 196

Query: 222 QEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +  A + G E  GL  +    A    H+ M G  ++LNV+ AAA+ LY +   
Sbjct: 197 DADRLLAEPTAWLFGPEAHGLSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARA 256

Query: 280 FAK 282
             +
Sbjct: 257 LGR 259


>gi|306844590|ref|ZP_07477177.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
 gi|306275034|gb|EFM56797.1| tRNA/rRNA methyltransferase [Brucella sp. BO1]
          Length = 228

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 11/225 (4%)

Query: 63  NPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL----E 117
           +   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+      +
Sbjct: 8   SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 66

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           + P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +           
Sbjct: 67  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 126

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG
Sbjct: 127 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 186

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +GL  +  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 187 EGLPSRLLERL-ETARIPMSKTFDSLNVATASGIAL----SRFSK 226


>gi|21220094|ref|NP_625873.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|3581852|emb|CAA20808.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
          Length = 282

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 101/261 (38%), Gaps = 10/261 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           + R  +   +     R+    E LFL  G   V  A       + +L AT  A  R    
Sbjct: 10  SPRSPRVAAARRLGKRNFRGKERLFLAEGPQAVREA-AGYGDMLVELFATVEAAERYADI 68

Query: 85  ANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                     V       I+ I       QGL      L +P  + +    +L+ VL HV
Sbjct: 69  VGAAREVGARVHLAADAVIEDI-STTVTPQGLVGVCRFLDTPFDEILAARPKLVAVLAHV 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N G +LR A A   + ++ T       +    +++ G+L H+P      +  A+  
Sbjct: 128 RDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASVGSLFHLPVAVGVPVERAVAG 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           +   G + +      +  L+ E+         A + G E  GL  +T+    ++  + + 
Sbjct: 188 LREAGVRVLAADGAGEDDLDTELDAGTMGGPTAWVFGNEAWGLPEETRALTDAVLRVPIH 247

Query: 258 GIIKALNVSNAAAVALYITQN 278
           G  ++LN++ AAAV LY +  
Sbjct: 248 GKAESLNLATAAAVCLYASAR 268


>gi|282898547|ref|ZP_06306535.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196415|gb|EFA71324.1| tRNA/rRNA methyltransferase (SpoU) [Cylindrospermopsis raciborskii
           CS-505]
          Length = 263

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 105/270 (38%), Gaps = 18/270 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSRKIF 69
           + SL++    ++R+ H            ++   + +   L G H ++ A  +N P   + 
Sbjct: 2   LTSLQNPLVKQIRKLH-----------SAKERHKQQLFVLEGTHLITEACSVNYPLETVC 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             +  +N+ + L W          + V  + +  +        G+           +   
Sbjct: 51  CTMDWQNSHSEL-WQNVCNACHRTEIVSQEVLAAMA-TTVQPDGVVAMVKRCEDHPI--- 105

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L + L+ + DP N+G I+R+A A    G+  +      +   + ++++G    +  
Sbjct: 106 PMTGLALALETIQDPGNLGTIIRTAAAVDASGLWLSNDSVDLDHPKVLRASAGQWFRLKK 165

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               NL D +Q     G Q +     ++    Q   +    ++LG EG GL  +    A 
Sbjct: 166 QVSHNLKDTVQDCQRGGMQVVATLPTAELTYWQVDWSLPSLILLGNEGAGLSDELATMAN 225

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + +   +++LNV+ +A++ LY  Q  
Sbjct: 226 IQVKIPLSPQVESLNVAISASLILYEAQRQ 255


>gi|530425|emb|CAA83745.1| rRNA methylase [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 223

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 9/222 (4%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           + ++      L  LD          +  V    +D+++    +HQG+  +         D
Sbjct: 2   VKEIWV--KNLKLLDEFDLKNTKIKINVVSENKLDQLLKTNELHQGIIAQIKDFNYTPFD 59

Query: 128 AV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            +      +   L++VLD ++DP+N GAI+RS    + DGII   +     ++ + K++S
Sbjct: 60  ELLNDLNTKEKSLVLVLDQIHDPYNFGAIIRSCSLLNVDGIIILDKKQVQVNSTVLKTSS 119

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGL 240
           G+   I   + +NL +A++ + + GF     + + +   + +    +K  +I+G E KG+
Sbjct: 120 GSAFDIKISKTNNLNNAIKILKNNGFWIYATNLNQNSTDMTKTQFANKSVVIIGNEQKGV 179

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + +    ++     I + N S A ++  +   N+  K
Sbjct: 180 SELLTKNSDFNIYVPSNKNIDSFNSSVACSIICFWIANYLNK 221


>gi|111021435|ref|YP_704407.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
 gi|110820965|gb|ABG96249.1| tRNA (guanosine-2 [Rhodococcus jostii RHA1]
          Length = 248

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 37/251 (14%)

Query: 45  QPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTI 101
            PEN+   G + V   L    P+  ++  + T+ +   +            +  VP   +
Sbjct: 4   GPENVL--GRNPVVECLRAGVPATALYVAVGTESDDRLKESVQRAADAGISILEVPRSDL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D++     +HQG+AL+  P      D +       + + LL+ LD++ DP N+GA++RS 
Sbjct: 62  DRLSA-NGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLGAVVRSV 120

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+   S G Q +GL +
Sbjct: 121 AAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDA 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKG------------LRPKTQETATSMAHLHMPGIIKA 262
                L++   +                         L    +E   ++  + M G +++
Sbjct: 181 GGDTTLDEFDGSG------------PVVVVVGSEGKGLSRLVRENCDAILSIPMAGPVES 228

Query: 263 LNVSNAAAVAL 273
           LN S AA V L
Sbjct: 229 LNASVAAGVVL 239


>gi|271967363|ref|YP_003341559.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
           43021]
 gi|270510538|gb|ACZ88816.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
           43021]
          Length = 276

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 103/254 (40%), Gaps = 9/254 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +  +++     + R  S        G   V  AL      + +L AT  A  R       
Sbjct: 15  KAVRRLTKRAFRDRDRS----FLAEGPQAVREALALEG-VVVELFATAEAEQRHADIVAA 69

Query: 88  PHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDP 144
                  V     + + ++  +    QGL      +  P   AV   ++L+ VL HV DP
Sbjct: 70  ATAAGLAVHRASGEVMAELA-QTVTPQGLLAVCRFVHVPLDGAVTAGARLVAVLAHVRDP 128

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G +LR+A A   D ++ T       +    ++++G+L H+P      +  A+Q++  
Sbjct: 129 GNAGTVLRTADAAGADAVVFTDASVDPYNGKCVRASAGSLFHLPVTTGVPVAQAVQRLKD 188

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +      K+ L+    +   A I G E  GL  +    A  +  + + G  ++LN
Sbjct: 189 AGLRVLAADGAGKQTLDDVDLSGPTAWIFGNEAWGLPEEILRLADEVVRVPIHGRAESLN 248

Query: 265 VSNAAAVALYITQN 278
           ++ AAAV LY +  
Sbjct: 249 LATAAAVCLYASAR 262


>gi|86605783|ref|YP_474546.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86554325|gb|ABC99283.1| RNA methyltransferase, TrmH family [Synechococcus sp. JA-3-3Ab]
          Length = 270

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 16/273 (5%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           SE + S K+    +LR+ HR           S+   +     + G H +  AL       
Sbjct: 3   SELLTSPKNPWIRQLRQLHR-----------SKGRREQGAFLVEGSHLLEEALGVGWPLR 51

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLD 127
                   A       A+LP     + V  + +  +   E+    +A+  +  + SP  +
Sbjct: 52  AVCYTFDWAERHPRLLASLPKHLRRQAVSLEVMAALSTTESPEGVVAVAVSRQIASPPPE 111

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L +V++ + DP N+G+++R   A   DG+  +      E+  + ++++G     
Sbjct: 112 ALR---LGLVVETLQDPGNLGSLIRVVAATGADGLWLSADSVDPENPKVLRASAGQWFRR 168

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P   +S+L   +Q     G Q +  +                   +LG EG GL+  T +
Sbjct: 169 PPQVLSDLPAWIQSCRRQGIQVLAATLAPLATCYWDHDLTRPTLFLLGNEGAGLQESTIQ 228

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A +   + M   +++LNV+    + LY     
Sbjct: 229 LADAQVRIPMAAGVESLNVAMTGGLLLYEALRQ 261


>gi|163840834|ref|YP_001625239.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162954310|gb|ABY23825.1| SpoU rRNA methylase family protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 278

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 4/240 (1%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +DY K+     +    ++           +  AL    +        +  L  L      
Sbjct: 16  KDYSKLTDTQLRRSVEAEQGLYIAESSKVLRRALATGHQP-RSFFMAEKWLESLADVFEA 74

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV       +++I G       LA    P     +  +  ++ + VL+ + D  N+
Sbjct: 75  YPDIPVYCGSDAVLEEITGFHLHRGALAAMNRPEPIDFVSLLSGARRVAVLEDIVDHTNL 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ + R +        + + GA+  +P+ R++   + L K+ S GF
Sbjct: 135 GAIFRSAAALEIDAVLISPRCADPLYRRSIRVSMGAVFQVPWARLTQWPEDLSKLKSAGF 194

Query: 208 QTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            T+ L+ +       E+     +++ALILG EG+G              + M G + +LN
Sbjct: 195 STVALALEQDSMTLDELATKLPERLALILGTEGEGPSAPVLAEVDQTVMIPMSGGVDSLN 254


>gi|88855453|ref|ZP_01130117.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88815360|gb|EAR25218.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 255

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 10/256 (3%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--P 90
           M    +KS   S+     L G  +VS AL      + +L AT  AL R    A       
Sbjct: 1   MAKLAKKS-ARSETGLFLLEGPQSVSEALQYRPELLVELYATPTALERHTEIARSAEAAD 59

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGA 149
             V+ V  Q ++ +       QG+        +   D +  +  L+ +L+ V DP N G 
Sbjct: 60  IEVEFVSEQVLEAMADT-VTPQGVIAVCRQFPTSVKDLLAGAPKLIAILEEVRDPGNAGT 118

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+A A   DG+I T R     +  + ++ +G+L H+P     +L   L+++     + 
Sbjct: 119 IIRAADAAGADGVILTGRSVDLYNPKVVRATTGSLFHLPVAVGVDLEPVLERVKGADLRV 178

Query: 210 IGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           I         L      + +   A + G E +GL  +    A  +  + + G  +++N++
Sbjct: 179 IAADIKGGDLLAARNDGVLDHPTAWLFGNEARGLTDEHYALADWVISVPIYGHAESMNLA 238

Query: 267 NAAAVALYITQNHFAK 282
            AA+V LY +   FA+
Sbjct: 239 TAASVCLYESA--FAQ 252


>gi|315658555|ref|ZP_07911427.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
 gi|315496884|gb|EFU85207.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
           M23590]
          Length = 246

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 109/265 (41%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++S   K++  ++  KK        R   +     + G+H +  A  +    I 
Sbjct: 2   EQITSAQNS---KIKNANKLKKK--------RERDKTGQALIEGIHLIEEAYQSN-LTIK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL   +               F +       + + +      QG               V
Sbjct: 50  QLFIIEPERTEQALIDYAEETFQINM----KVAETLSGTITPQGFFAVIEKPNYD----V 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +++ ++++D + DP N+G ++R+A A   D I+  K  + +    + +++ G++ HIP 
Sbjct: 102 THAKQVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADAYQDKVLRASQGSVFHIPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +  ++L   +++         G + ++    +     +  AL+LG EG G+     E  T
Sbjct: 162 V-TADLQGFIKQFEG---PVFGTALENAVSYKNLDPQETFALLLGNEGDGVNNALLEHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 KNLIIPIYGKAESLNVAIAGSILLY 242


>gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum]
          Length = 282

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 18/269 (6%)

Query: 24  RRNHRDYKK-MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---A 79
            RN+   K+ + +   + RH      +F+ GV  V  AL +  + +F+ +A    L    
Sbjct: 8   SRNNPLIKRFLAAREGRHRHV-----IFIEGVRLVEEALRS--KIVFEAVAYTPRLYETP 60

Query: 80  RLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
           R           P +   +    +  I   E     + L   P  +        + L ++
Sbjct: 61  RGAQLLAALQSQPCRGARLTEALMAYISDVETAPGVIVLGQRPSSTLPDLTHHPAPLFVL 120

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            D +  P N+GA++R+A A    GI+ T            ++A+G+   +P I  S++ D
Sbjct: 121 ADGIQSPGNLGALIRTAEAAGATGILVTVGTVDPFQPKALRAAAGSAFRLPIIAGSSVAD 180

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE----TATSMAH 253
            LQK++  G + +        P E       + L LG+EG GLR  T +     A  +  
Sbjct: 181 ELQKLYRQGVRLVTADIHGDTPYEAFDWRQPVLLWLGSEGHGLRSLTDDFKHRLAARLV- 239

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + M G +++LNV+ A A+ LY  +    +
Sbjct: 240 IPMEGQVESLNVAVAGAILLYEARRQRRQ 268


>gi|284931714|gb|ADC31652.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           F]
          Length = 260

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 110/248 (44%), Gaps = 12/248 (4%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           FN K ++  + E L L+G + V   L N   KI ++   K     L            + 
Sbjct: 9   FNNKHQNKHKKERLCLFGYNAVYEGLINN-LKIKKVYLHKE--DHLLLKLIKQKGIEYEL 65

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQ--LLMVLDHVNDPHNIG 148
              +  D      + HQG   E          +   + ++N Q  +++VLD ++DP N G
Sbjct: 66  HTIKWFDNQYRDLSNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGNFG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGF 207
            ILRS +A +  G+I  K    S +  + K++ GA  ++  I ++NL+ A++ +   +GF
Sbjct: 126 GILRSCLAANVLGVIFKKDNQASINNTVIKTSLGACFYLNLIEVANLSYAIKDLQDKYGF 185

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVS 266
            +   +   +         +K  LI+G E KG+  +  + A     + M    I++LNVS
Sbjct: 186 WSYVSNLSDQAQDYNVDYANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNVS 245

Query: 267 NAAAVALY 274
            A  + L+
Sbjct: 246 VATGIMLF 253


>gi|302518071|ref|ZP_07270413.1| rRNA methyltransferase [Streptomyces sp. SPB78]
 gi|302426966|gb|EFK98781.1| rRNA methyltransferase [Streptomyces sp. SPB78]
          Length = 297

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 23/275 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           ++ SL+       RR  +     +SF  K R           G   V  A    +  + +
Sbjct: 32  ELTSLRSPRVVAARRLAK-----RSFRGKERR------FLAEGPQAVREA----AGHLVE 76

Query: 71  LLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           + AT++A  R     D       PV +   + +  +       QG+      L +   D 
Sbjct: 77  VYATEDAARRHPELLDDARARGVPVLSASEEVLAAMADT-VTPQGVVGLCRFLDTGFADV 135

Query: 129 V-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           + R  +L+ VL HV DP N G +LR A A   D +I T       +    +++ G+L H+
Sbjct: 136 LARRPRLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHL 195

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKP----LEQEIKNDKIALILGAEGKGLRPK 243
           P +    + +A+  +   G + +             L++       A + G E  GL  +
Sbjct: 196 PVVTGVPVEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEE 255

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+  A ++  + + G  ++LN++ AAAV LY +  
Sbjct: 256 TRALADAVVRVPLHGKAESLNLATAAAVCLYASAR 290


>gi|304436951|ref|ZP_07396914.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369902|gb|EFM23564.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 276

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 98/263 (37%), Gaps = 8/263 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   +++    + SR  ++     + G+     A  +  + +  +L  +   A      
Sbjct: 11  ENPLIRRLSVLVRSSRRAAKENVFLVEGLRLAEMAARSDGQILHAVLTERALAAERAAIL 70

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLD 139
                    PV  VPP+        +A    L L   P      D   A       + LD
Sbjct: 71  AEQLHLRGVPVNCVPPRLFAACAETDAPQGILLLMQRPPRRSLTDLVHAAEKVPFYLALD 130

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G ILR+A A    G+I  +  +   S+ + ++  G+L ++P+I   +  + L
Sbjct: 131 RVQDPGNVGMILRTADAAGAAGVILLRGCADVYSSKVVRATMGSLFYVPFISGVDDEELL 190

Query: 200 QKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +            + D+               ++LG E  G+  +         ++ M G
Sbjct: 191 RFAQEQSLYLYAAACDADAVTHFAADLCRPTIVVLGNEANGVSERLLGAC-QHLYVPMCG 249

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             ++LNV++AA   LY +    +
Sbjct: 250 QAESLNVASAATAILYESMRQRS 272


>gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 289

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 99/258 (38%), Gaps = 8/258 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ +QK ++ ++       G+  V  AL+     I  L+ +K+ +     + 
Sbjct: 21  SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDALDLGW-TIQTLIFSKSKIGNAAIEN 78

Query: 86  NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      V     + ++ +  ++     + +         +   +   + + LD V
Sbjct: 79  TAARAVANGGFVIKASQKVMESLTRRDNPQTVIGIFKQKWHPFEMIKGQIKDVYIALDRV 138

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    G+I     +   S    ++  G++  +P  R+         
Sbjct: 139 RDPGNLGTIIRTADAVGAKGVILIGETTDPFSTETVRATMGSIFSVPLYRLDESAFLNWS 198

Query: 202 MHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            H  G   +G            + KN  I L++G E +GL          +A +   G  
Sbjct: 199 AHFKGM-IVGTHLKGSLDYRTLDFKNGPIILLMGNEKQGLSDLLTNRCDKLARIPQSGRA 257

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A AV LY  + 
Sbjct: 258 DSLNLAVATAVMLYEIRR 275


>gi|325294465|ref|YP_004280979.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064913|gb|ADY72920.1| RNA methyltransferase, TrmH family, group 3 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 235

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 11/234 (4%)

Query: 48  NLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
              ++G +T+  A+ +     K++         + L+W          +    Q ++++ 
Sbjct: 2   GFIIWGRNTLEEAVKSGRTLEKVYLQYGHYFEPSFLNWLKE--KGIKFQWAKKQQLERLA 59

Query: 106 GKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            K   HQG+    +P+   + +      +      +VLD V +P N+GAI R+  +F   
Sbjct: 60  -KTKKHQGIVAILSPIEYISCEKLFKSTIEKESFFVVLDRVTEPQNLGAIARTVESFGGV 118

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI+  ++ S   + +  K++SGAL H+   R+ +L ++L      G     + +   K +
Sbjct: 119 GILLPEKNSAPINEIALKASSGALFHLMVSRVPSLNESLITFKKLGGSIYAVET-GGKDI 177

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   + LILG+EGKG+     + +  +  +   G   +LNVS AA +A++
Sbjct: 178 RNINFQKPLGLILGSEGKGIEKNLLKLSNEIVSIPTVGKTPSLNVSVAAGIAIW 231


>gi|294651075|ref|ZP_06728412.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823024|gb|EFF81890.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 258

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 9/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +KIF L  T+ ALA  D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDL 66

Query: 84  DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              +  H   V  +       +         LA+   P  + T+D   +    ++L+++ 
Sbjct: 67  QKVMELHQGHVFVISEVLYKDLSTLGTTLPCLAIIDLPKTASTIDFGVD---TLILENIQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       L + L K 
Sbjct: 124 DPGNVGTLLRSAAAANIKQIICTQGSATLWSPRVLRAGMGAHFSLNCFENFQLNEILPKF 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                     SS     L  +        ILG EG+G      E A     +  PG  ++
Sbjct: 184 Q---IPVFVTSSHRSTSLYSKDLTQPCVWILGNEGQGASEYALEHA-QAVTIPQPGGQES 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ A ++  +      
Sbjct: 240 LNVAIAGSICFFEMVRQR 257


>gi|322831470|ref|YP_004211497.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
 gi|321166671|gb|ADW72370.1| tRNA/rRNA methyltransferase (SpoU) [Rahnella sp. Y9602]
          Length = 367

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 123 RRQRQEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVEDD 182

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L        ++ L++V +PHN+G I+RS  
Sbjct: 183 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQTAPAKDCVLALENVGNPHNLGGIMRSCA 241

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +G++     +  ES    ++A G  EH+  I   N  + L+     G+  +  SS 
Sbjct: 242 HFGINGMMVQDP-AQLESGAAVRTAEGGAEHVKAISADNFLEVLETFRKAGYTIVTTSSH 300

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L +     K+ L+LG E  GL     +       +   G +++LNVS A+ + L  
Sbjct: 301 KGTALGKAQLPAKMVLVLGEESDGLSDSAWQQGDLSVSIGGTGKVESLNVSVASGILLAE 360

Query: 274 YITQNH 279
           +  QN 
Sbjct: 361 WWRQNQ 366


>gi|288920452|ref|ZP_06414761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
 gi|288348181|gb|EFC82449.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
          Length = 288

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 17/260 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL--------AR 80
           DY  +     + R   +       G   +  AL    +     L +   L        AR
Sbjct: 22  DYVALTDVALRRRREPEQGLFIAEGERVIERALRAGYQP-RSALVSPARLPGVPASFWAR 80

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLD 139
              D   P   PV    P  +  I G E VH+G LA             +  ++ ++V +
Sbjct: 81  PSPDRPAP---PVYLAGPAVLAAITGFE-VHRGALASMCRREPLDPAHLLSTARRVLVCE 136

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            +    N+GAI RSA     D ++ + R +        + + G +  +PY R+     AL
Sbjct: 137 DLVSHTNLGAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPAAL 196

Query: 200 QKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             + + GF+ + L+               +D++A++LG EG GL  +   TAT  A + M
Sbjct: 197 SLLRTAGFEVVALTPAPDAQELTAAWAAPDDRVAVLLGTEGSGLTDQVLATATRRARIPM 256

Query: 257 PGIIKALNVSNAAAVALYIT 276
              + +LNV+  AA+A Y+ 
Sbjct: 257 AHGVDSLNVAATAAIACYVL 276


>gi|225075264|ref|ZP_03718463.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
           NRL30031/H210]
 gi|224953439|gb|EEG34648.1| hypothetical protein NEIFLAOT_00267 [Neisseria flavescens
           NRL30031/H210]
          Length = 263

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 99/287 (34%), Gaps = 37/287 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +++   +     L GVH + + 
Sbjct: 1   MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQSY 42

Query: 61  LNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +        L  K      +           +  V  + + KI           L  A
Sbjct: 43  LQSGGTPKQVYLPEKKQQHPEIQEITAQLDEGLITWVGNEALSKITS---------LSDA 93

Query: 120 PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             +   +D  + + L      +VL+ V DP N G ILRSA A     I+         S 
Sbjct: 94  DDVMTWIDIPKQAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGVRQIVCGNDSVDIWSP 153

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALIL 233
            + ++  GA   +       L+  ++       Q    +   +   L +   +   A + 
Sbjct: 154 KVLRAGMGAHFLLSIFSRVELSAWMETYQ---HQIWATALGGRNIGLYEMDLSQTCAWVF 210

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G EG G+    +E A +   + M G  ++LNV+ AA V L+      
Sbjct: 211 GNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQR 257


>gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3]
 gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3]
          Length = 286

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 93/259 (35%), Gaps = 8/259 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++  QK +   +       G+  V  AL         + A       L   A 
Sbjct: 24  NPIIKDIKALTQK-KGREETGTFMAEGLKLVIDALELGWTISTLVYAKAAKGKPLVEQAA 82

Query: 87  L---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVN 142
           +        V  V  + I  I  ++   Q +         P  D      +  + LD V 
Sbjct: 83  VKTVASGGLVLEVSEKVIASITRRD-NPQMVVGIFDQRWKPLKDIRPEKGETYIALDRVR 141

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    G+I     +   S    ++  G++   P  R +++ + L   
Sbjct: 142 DPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATMGSVFATPVAR-ASVEEFLSWK 200

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            S     +           +       + L++G E  GL P+    A  +A +   G   
Sbjct: 201 KSANVSVVATHLAGSVDYRKIDYAGKPVVLLMGNEQSGLPPELAGRADQLARIPQQGRAD 260

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN++ A AV L+  + H 
Sbjct: 261 SLNLAIATAVMLFEARRHL 279


>gi|227877757|ref|ZP_03995791.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256843610|ref|ZP_05549098.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256850086|ref|ZP_05555516.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|293380718|ref|ZP_06626766.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
           crispatus 214-1]
 gi|227862660|gb|EEJ70145.1| RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256615030|gb|EEU20231.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256713058|gb|EEU28049.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|290922682|gb|EFD99636.1| RNA 2'-O ribose methyltransferase substrate binding [Lactobacillus
           crispatus 214-1]
          Length = 255

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 9/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H    AL    +K   +L T+ AL + D +  +        +  + I
Sbjct: 23  YRDDEGLYLIEGFHLFEEALK-AGKKYQYILGTEEALDQADSEYEVNLSGKNVVLINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + +      Q + +     +    +   N    ++LD++ DP N+G I+R+A A   DG
Sbjct: 82  ARHLSSTKNSQEIFMVLK--IDQPKEFPFNYGKWVLLDNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPL 220
           ++ +   +   +    ++  G+  HI  I+  +L D +               D S K L
Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDLADVITDFQDAAIPVYASLLDRSAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               K  ++ALI+G E  G+       A    ++ + G  ++LN + AA + +Y    HF
Sbjct: 199 PDFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAESLNAAVAAGIMIY----HF 254

Query: 281 A 281
           A
Sbjct: 255 A 255


>gi|290961783|ref|YP_003492965.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260651309|emb|CBG74431.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 272

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 7/239 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     + R           G   +  A          LL+ K      D    LP 
Sbjct: 18  YTGLTDVELRRRREPAEGLFIAEGEKVIRRAKEAGYEMRSMLLSAKWVDVMRDVIDELP- 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIG 148
             PV  V P+  +++ G   VH+G          PT D +  + + +++++ VND  NIG
Sbjct: 77  -APVYAVSPELAEQVTGYH-VHRGALASMQRKPLPTADQLLGAARRVVIMESVNDHTNIG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ +   +        K + GA+  +PY R+      L  +   GF 
Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLDAVRDAGFT 194

Query: 209 TIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+ D K K L++   +  D++AL+LGAEG GL  K   +A     + M   + +LN
Sbjct: 195 LLALTPDEKAKSLDETAPHRMDRVALMLGAEGDGLSTKALMSADEWVRIPMAHGVDSLN 253


>gi|297626567|ref|YP_003688330.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922332|emb|CBL56904.1| rRNA methylase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 286

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + +H ++       G   V  AL +P   +  L+    A  +   D  L     +  V  
Sbjct: 29  QHKHRAETGFFLAEGAQAVREALRSPG-AVDTLVVDDPARHQELVDLALDDGQLIDVVQG 87

Query: 99  QTID-KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + D   +      QG+            + +   +L+++   V DP N G ++R A AF
Sbjct: 88  SSADLASLSDTKTPQGIIA-VCHWSGSRFEDIAEPRLVVICAQVRDPGNAGTVVRCADAF 146

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++ T       +    +++ G++ H+P I    LT A++  H+ G Q +       
Sbjct: 147 GADAVVLTHGSVDITNPKTVRASVGSIFHLPIISGVELTGAIEWAHASGLQVLAADGSG- 205

Query: 218 KPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +P++            A ++G E  GL     E A  +A + M G  ++LN+S AAA+ L
Sbjct: 206 QPVDLMAGAGQLGQPTAWLMGNEAWGLPRHDLELADRVAAVPMWGAAESLNLSTAAAICL 265

Query: 274 YITQN 278
           Y T +
Sbjct: 266 YATAS 270


>gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
 gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium tumefaciens str. C58]
          Length = 286

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 98/282 (34%), Gaps = 8/282 (2%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           ++K   E I              +   K +++  QK +   +       G+  V  AL  
Sbjct: 1   MTKDMRENITRRVGQVKEVTSLANPIIKDIKALTQK-KGREETGTFMAEGLKLVIDALEL 59

Query: 64  PSRKIFQLLATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  + A       L   A +        V  V  + I  I  ++   Q +      
Sbjct: 60  GWTIKTLVYAKAAKGKPLVEQAAVKTVASGGLVLEVSEKVIASITRRD-NPQMVVGIFEQ 118

Query: 121 LLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              P  D      +  + LD V DP N+G I+R+A A    G+I     +   S    ++
Sbjct: 119 KWKPLKDIRPEKGETYIALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRA 178

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGK 238
             G++   P  R +++ + L    S     +           +       + +++G E  
Sbjct: 179 TMGSVFATPVAR-ASVEEFLSWKKSAHVSVVATHLAGSVDYRKIDYAGKPVVILMGNEQS 237

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           GL P+    A  +A +   G   +LN++ A AV L+  + H 
Sbjct: 238 GLPPELAGKADQLARIPQQGRADSLNLAIATAVMLFEARRHL 279


>gi|226363791|ref|YP_002781573.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226242280|dbj|BAH52628.1| rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 322

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 35/250 (14%)

Query: 45  QPENLFLYGVHTVSAALNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTI 101
            PE +   G + V   L    P+  ++  + T+ +   +            +  VP   +
Sbjct: 78  GPETVL--GRNPVVECLRAGVPATALYVAVGTESDDRLKESVQRAADAGISILEVPRTDL 135

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSA 154
           D++     +HQG+AL+  P      D +       + + LL+ LD++ DP N+GA++RS 
Sbjct: 136 DRLSA-NGMHQGIALQVPPYRYAHPDDLIAEARKHQEAPLLVALDNITDPRNLGAVVRSV 194

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF   G++  +R S S +AV  ++++GA   +P  R +NLT  L+   S G Q +GL +
Sbjct: 195 AAFGGHGVVIPERRSASVTAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQVVGLDA 254

Query: 215 DSKKPLEQEIKNDKIALILGAEGKG-----------LRPKTQETATSMAHLHMPGIIKAL 263
                L++   +                        L    +E   ++  + M G +++L
Sbjct: 255 GGDTTLDEFDGSGP-----------VVVVVGSEGKGLSRLVRENCDAILSIPMAGPVESL 303

Query: 264 NVSNAAAVAL 273
           N S AA V L
Sbjct: 304 NASVAAGVVL 313


>gi|312984341|ref|ZP_07791683.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
 gi|310894266|gb|EFQ43346.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
          Length = 255

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 9/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H    AL    +K   +L T+ AL + D +  +        +  + I
Sbjct: 23  YRDDEGLYLIEGFHLFEEALK-AGKKYQYILGTEEALDQADSEYEVNLSGKNVVLINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + +      Q + +     +    +   N    ++LD++ DP N+G I+R+A A   DG
Sbjct: 82  ARHLSSTKNSQEIFMVLK--IDQPKEFPFNYGKWVLLDNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPL 220
           ++ +   +   +    ++  G+  HI  I+  +L D +               D S K L
Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDLADVITDFQDATIPVYASLLDRSAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               K  ++ALI+G E  G+       A    ++ + G  ++LN + AA + +Y    HF
Sbjct: 199 PDFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAESLNAAVAAGIMIY----HF 254

Query: 281 A 281
           A
Sbjct: 255 A 255


>gi|291458961|ref|ZP_06598351.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418215|gb|EFE91934.1| RNA methyltransferase, TrmH family [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 248

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 9/235 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            ++++   QK R   +       G          P   + ++  + +    L      P 
Sbjct: 2   IREVRELLQKPRARQKAGLFVSEGERLCREI---PKDLVERVFLSDSYRGSLPAGFR-PK 57

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +  VP + +  I   +   QG+ +    L    L    +    ++L+ + DP N+G 
Sbjct: 58  DHTLIRVPDELMAHISDTKHS-QGILVLVRMLPERVL----SGDFFLLLESLQDPGNLGT 112

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R A A   +GI  +   +   S  L +S  G+L  +P+  + +L + + ++   G + 
Sbjct: 113 IFRLAEAAGVNGIYMSSDCADIYSPKLVRSTMGSLYRLPFRIVPDLKETIAELKKKGVRC 172

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                  +K           A ++G EG+GL P+  E A     + M G +++LN
Sbjct: 173 FASHLLGEKAHYDCDFRSPTAFLIGNEGRGLSPELSEAADIRLRIPMKGGVESLN 227


>gi|153008909|ref|YP_001370124.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151560797|gb|ABS14295.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 275

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/285 (24%), Positives = 124/285 (43%), Gaps = 22/285 (7%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL--N 62
                  +  + D +  +L   +RD ++     ++ R           G   V   L  +
Sbjct: 4   DTHSHGCVQQIDDPNDIRLS-PYRDIREKDLVGRQQR-------FIAEGK-VVLNVLFSS 54

Query: 63  NPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL----E 117
           +   +   LL  +N LA L +  + LP   PV +VP   +D + G   VH+G+      +
Sbjct: 55  SARFETESLLVLENRLAGLGEQLSQLPSEVPVYSVPQTVMDAVAGFH-VHRGILAVGRRK 113

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T P L   LD +    L++VL  +++  N+G+I R+A AF  D ++              
Sbjct: 114 TPPSLQAMLDTLPAKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDDTCCDPLYRKAI 173

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + + GA   +PY    ++ + +  +    F  + LS  S   +    K+ + AL+LG EG
Sbjct: 174 RVSVGATLKVPYFHGGSIDEIIAALGDADFNLLALSPSSSLSVYDATKHGRQALLLGTEG 233

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +GL P+  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 234 EGLPPRLLEKL-QTARIPMSTAFDSLNVATASGIAL----SRFSK 273


>gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 286

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLD 82
           ++   K +++   K +   +       G+  V  AL++       I+      NA     
Sbjct: 21  SNPLVKDIKALTLK-KFRDRERAFMAEGLKLVLDALDSGWAIRTLIYAKAGRGNAAVEKA 79

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
               +     V  V  + +  I  ++     + +     L       +   L + LD V 
Sbjct: 80  AARTVAAGGLVLEVSEKVLSAITRRDNPQMVVGVFEQRWLPLKEVTPKGEDLWVALDRVR 139

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+  A    G+I     +   S    ++  G++  +P  R         + 
Sbjct: 140 DPGNLGTIIRTVDAVGARGVILVGECTDPFSVETVRATMGSVFSVPLARADEAAFLAWRE 199

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           H  G    G              +   + L++G E +GL  K  E    +  +   G   
Sbjct: 200 HFAGLMV-GTHLKGSVDYRNVDYSGGPVLLLMGNEQQGLPDKLAEACDRLVRIPQAGRAD 258

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++ A  V LY  + 
Sbjct: 259 SLNLAVATGVMLYEIRR 275


>gi|330469058|ref|YP_004406801.1| tRNA/rRNA methyltransferase SpoU [Verrucosispora maris AB-18-032]
 gi|328812029|gb|AEB46201.1| tRNA/rRNA methyltransferase (SpoU) [Verrucosispora maris AB-18-032]
          Length = 267

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/285 (21%), Positives = 112/285 (39%), Gaps = 29/285 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI++   E+I                DY+ +     ++R           G   +  A
Sbjct: 1   MELITEPDDERI---------------ADYRALTDVELRTRWEPPHGLFIAEGELVLRRA 45

Query: 61  LNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-- 116
           L    P+R         + LA LD         PV    P  + +  G   VH+G+    
Sbjct: 46  LRAGYPARSYLVDAKRVDQLADLDT-----GDAPVYAATPDVLQEATGFH-VHRGVLASF 99

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
              PL S   + +  ++  ++L+ VN+  N+GAI R+  A   D ++ +   +       
Sbjct: 100 RRKPLPSAA-EVLATARRTVILEDVNNHTNLGAIFRAVAALGVDAVLLSPSCADPLYRRS 158

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKND--KIALIL 233
            + + G +  +PY ++     AL ++   GF  + ++      P+++       + AL+L
Sbjct: 159 VRVSMGEVFAVPYAKLDPWPTALAQVRDAGFTVLAMTPAPDAVPIQRLTPAQRARAALLL 218

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GAEG GL       +     + M   + +LNV+ A AVA +    
Sbjct: 219 GAEGAGLTQAAMAASDVRVVIPMRRGVDSLNVAAATAVACWELGR 263


>gi|224418084|ref|ZP_03656090.1| hypothetical protein HcanM9_02289 [Helicobacter canadensis MIT
           98-5491]
 gi|253827413|ref|ZP_04870298.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
 gi|253510819|gb|EES89478.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
          Length = 228

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   V   L     KI  +   K    +  ++       P+  +  +    +  K 
Sbjct: 1   MVVYGKRIVELILAQHQEKIINIYLAKEVD-KTFFNRLKKTQKPILRLDAKKAQAMA-KG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  LE   L       +++   ++VL  ++D  N+G++ RSA     DGI+    +
Sbjct: 59  GNHQGYLLEIEALEPVEFHFIKSMDFVLVLCGISDVGNLGSLFRSAYGLGVDGIVICGIH 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +  +  VL +++SGA+  +P+  + N  D   ++    F  +G S   +          K
Sbjct: 119 NFKQEGVL-RASSGAMLGMPFCVVYNPLDVFHELKQADFVLLGTSLQGQNL--PISLESK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL+LG EG+GL  K          + M     +LNV  A A+ +
Sbjct: 176 KALVLGNEGEGLSKKVLAKMDYNLTIPMKRDFDSLNVGVAGAILI 220


>gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
 gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
          Length = 284

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 110/287 (38%), Gaps = 18/287 (6%)

Query: 3   LISKKKSEKIFSLKDSHYAKL--RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
             ++++ + IFS K S   ++    ++   K ++S     R   + +   + GV  V+ A
Sbjct: 6   FAAQQQPKTIFSAKKSGMRRMISSTHNAHVKYLRSLCADPRERRREQRFVIEGVRLVAHA 65

Query: 61  LNNPSRKIFQLL------ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           L   +     L       AT    A L+     P  F    V    I            +
Sbjct: 66  LAVGAELCVVLYNPDSLRATPAGSALLEHLLTRPGCFAANEV---AISAATDTRTPQGVV 122

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A    P L+P         L ++LD + DP N+G +LRSA A     ++     +   + 
Sbjct: 123 AAMAWPNLAP------QPGLGLILDAIQDPGNLGTLLRSAEAAGVGWVVCAPGCADPFAP 176

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++A GA  ++P     +  D   ++          ++D+  P  Q   N   ALI+G
Sbjct: 177 KVVRAAMGAHFNLPLRHDLSWEDIGAEVADLPV-VYAAAADAAMPYYQADWNQPAALIIG 235

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +E  GL       AT    + M G  ++LN + A +V L+       
Sbjct: 236 SEAHGLSAAGMALATQYLAIPMQGRAESLNAAVAGSVMLFEALRQRG 282


>gi|268608625|ref|ZP_06142352.1| hypothetical protein RflaF_03872 [Ruminococcus flavefaciens FD-1]
          Length = 214

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 10/212 (4%)

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           +  K+               P+ T   + I  I G   V   L       L    +  R 
Sbjct: 1   MCRKDIEGEAKGIVARCGDIPLYTGEEEEITAITGFRLVRGALCAMRRRELPSAEELCRG 60

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-- 189
            + + VL++V +P N+GAI RSA A   + +I T   +       ++ + G +  +P+  
Sbjct: 61  KKRIAVLENVVNPTNMGAIFRSAAALGMEAVILTSDCTDPLYRRSSRVSMGTVFQVPWTI 120

Query: 190 --IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKT 244
              R     D    +H  G++   ++  D+   ++ +  N  +K+A+I+G EG+GL   T
Sbjct: 121 MKCRNEEYPDI---LHGLGYKMAAMALKDNSVDIDDDRLNSEEKLAVIMGTEGEGLADHT 177

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +       + M   + +LNV+ A+AVA +  
Sbjct: 178 IDACDYTVKIPMYNGVDSLNVAAASAVAFWQL 209


>gi|310764912|gb|ADP09862.1| putative methyltransferase [Erwinia sp. Ejp617]
          Length = 344

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 90/245 (36%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +     TV   
Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFVQGVTPRFREALKWMAANRKAYHTVDDA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+       +    S  L        ++ L+ + +PHN+G I+RS  
Sbjct: 161 ELQKASGTE-HHGGVCFLIKKRVGMPVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS 
Sbjct: 220 HFGAKGLLVDDA-SLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSH 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL       K+ L+LG E  GL   T +       +   G +++LNVS A  V L  
Sbjct: 279 QGVPLSTAELPAKMVLVLGQERDGLSDSTFQQGDLSVSISGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|302804484|ref|XP_002983994.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
 gi|300148346|gb|EFJ15006.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
          Length = 244

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 111/246 (45%), Gaps = 24/246 (9%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLAT----------KNALARLDWDANLPHPFP--VKTVPP 98
           LYG+  V AAL    R ++ L             + ALA + W           V+T   
Sbjct: 3   LYGIGPVRAALQARRRDLYVLYVQNGLDEKHPGKRKALADVLWIMKAAKRLELRVETTSK 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAIL 151
             ++ +V     HQG+ L+ +PL    + A+           + + LD V DP N GAIL
Sbjct: 63  HALNVLVD-NRPHQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGAIL 121

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RS+  F   G++   + S   S V++K+++GALE I  +   N+   L+     G++ IG
Sbjct: 122 RSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRVIG 181

Query: 212 LS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            S S   + L    KN    L+LG EG G+RP        +     PG + +LNVS AA 
Sbjct: 182 TSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEVDCVLR---PGTVDSLNVSVAAG 238

Query: 271 VALYIT 276
           V L+  
Sbjct: 239 VLLHEL 244


>gi|227820613|ref|YP_002824583.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
 gi|227339612|gb|ACP23830.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium fredii NGR234]
          Length = 285

 Score =  186 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 10/260 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---- 82
           +   K +++  QK +H  +  +    G+  V  AL+    KI  L+  K A  +      
Sbjct: 24  NPIVKDIRALAQK-KHRDETRSFMAEGLKLVIDALDLGW-KIKTLVYAKAAKGKPQVGQV 81

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
               +     V  V  + I  I  ++   Q +         P  D      +  + LD V
Sbjct: 82  AAKAVARGGLVLEVSEKVISTITRRD-NPQMVVGIFEQRYQPLKDIRPGEGETYVALDRV 140

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    GII     +   S    ++  G++  +P  R ++  D L+ 
Sbjct: 141 RDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAMPVAR-ASAEDFLRW 199

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             S G Q +                +  + L++G E  GL  +    A ++A +   G  
Sbjct: 200 QRSAGVQVVATHLSGSVDYRTIDYRSKPVVLLMGNEQAGLPAELAREAGALARIPQAGRA 259

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN++ A  + L+  + H 
Sbjct: 260 DSLNLAIATGIMLFEARRHL 279


>gi|237733780|ref|ZP_04564261.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
 gi|229383118|gb|EEO33209.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 238

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 115/254 (45%), Gaps = 23/254 (9%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +    QK ++  + +   + G H V+ AL   + ++  L++TK+  + L+    
Sbjct: 7   NSTIKTLMKLKQK-KYRDEMKAYLVEGDHLVTEALK--ANQVELLISTKHIDSELEVLEV 63

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                         + K+       Q +  +        L   +  +  ++LD + DP N
Sbjct: 64  SEE----------VMAKLA-FTKSPQSIMAKCRMQKEIQL---KEGRRYLLLDDLQDPGN 109

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IG ++R+A+AFS D +I +       +  L +S  GA  H+  I   NLT  + ++   G
Sbjct: 110 IGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFHLSCIY-GNLTQLISQLQEKG 168

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              IG + ++ K + Q  +  K+A ++G EG G+ P+       + ++ +   I++LNV+
Sbjct: 169 VVVIGSALENGKNIAQINRYSKMAFVVGNEGNGMNPEVLAKCDDIGYIPI-NTIESLNVA 227

Query: 267 NAAAVALYITQNHF 280
            A ++ +Y    HF
Sbjct: 228 IAGSIMMY----HF 237


>gi|118617269|ref|YP_905601.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
 gi|118569379|gb|ABL04130.1| 23S rRNA methyltransferase TsnR [Mycobacterium ulcerans Agy99]
          Length = 275

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 94/250 (37%), Gaps = 7/250 (2%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
           +  Q+     +       G + V AA       I +L  T+ A  R +         PV 
Sbjct: 27  AKLQRHVGRRRTSRFLAEGPNLVEAA--AARGLIRELYVTEAAEQRHEPLLAR-QDAPVY 83

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRS 153
            V  +   K +       GL        +   + +  +  L+ V   + +P N G ++R 
Sbjct: 84  VVT-ERAAKALSDTVTPSGLVAVCEMPTTGLAEVLSGAPRLVAVAVEIGEPGNAGTLIRI 142

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   + ++         +    ++++G++  IP I   + + AL  +   G Q +   
Sbjct: 143 ADAMGANAVVLAGNSVDPYNGKCLRASAGSIFAIPVIVAPDTSAALGALRGAGLQALASV 202

Query: 214 SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            D +K L+          A + G E  GL  +    A     + M G  ++LNV+ AAA+
Sbjct: 203 LDGEKSLDDIDQLLEAPTAWLFGPEAHGLSAEVAAAAHHRVRIPMSGGAESLNVAAAAAI 262

Query: 272 ALYITQNHFA 281
            LY +    +
Sbjct: 263 CLYQSARALS 272


>gi|259907580|ref|YP_002647936.1| putative methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224963202|emb|CAX54686.1| Predicted tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283477422|emb|CAY73338.1| hypothetical protein EPYR_00958 [Erwinia pyrifoliae DSM 12163]
          Length = 344

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 89/245 (36%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +     TV   
Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFVQGVTPRFREALKWMAANRKAYHTVDDA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+       +    S  L        ++ L+ + +PHN+G I+RS  
Sbjct: 161 ELQKASGTE-HHGGVCFLIKKRVGMPVSEWLAQAGQKDCVVALEDIGNPHNLGGIMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS 
Sbjct: 220 HFGAKGLLVDDA-SLLESGAAVRTAEGGAEHVRAISGESFAAGLDAFRQAGYTIVTTSSH 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL       K+ L+LG E  GL   T         +   G +++LNVS A  V L  
Sbjct: 279 QGVPLSTAELPAKMVLVLGQERDGLSDSTFRQGDLSVSISGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|261416042|ref|YP_003249725.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372498|gb|ACX75243.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327067|gb|ADL26268.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 415

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 93/241 (38%), Gaps = 4/241 (1%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            +   +       GVH V   + +    +  +   +        +A       + T+   
Sbjct: 171 EKGREREGKFLGEGVHVVEELVKHHRELVISVYVVEGFENEELIEAINEAEITLHTLTED 230

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + ++       QG+           +     S L +V D V DP N+G + R+++ F+ 
Sbjct: 231 QMKRLSSTMTT-QGIIAYCNIASKKPVYETSRSVLTLV-DAVQDPGNLGTLFRTSLGFNS 288

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            G+I  +      +  + + +SG    +P+    +L D +  + S G+  I     +K+ 
Sbjct: 289 SGMILGRGTVSPFNPKVVRGSSGTFLRVPFEFDVDLVDQINFLRSKGYTIIATDLHAKQS 348

Query: 220 LEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L +   +   K+A ++G EG G  P   E A     + M   +++LNV+ A  +  Y   
Sbjct: 349 LREIPAHKLRKMAFLVGNEGAGTNPYFIELADETVKIPMSSELESLNVAVAHGILSYEAA 408

Query: 278 N 278
            
Sbjct: 409 Q 409


>gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 274

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 98/259 (37%), Gaps = 11/259 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ N+K +  +Q       G+  V  AL N    I  L+ +K+       + 
Sbjct: 12  SNPIIKDLKALNKK-KKRNQEGLFMAEGLKLVIDAL-NLGWTIQTLIFSKSTQGNTTIEN 69

Query: 86  NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLD 139
              H       V     + ++ I  ++   Q +           ++ +  S   + + LD
Sbjct: 70  TAAHILANGGYVIRASQKIMESITHRD-NPQTVV-GIFKQQWHPIETITESAKDVYIALD 127

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G I+R+A A    G+I     +   S    +S  G++  IP  R  N    L
Sbjct: 128 RVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRSTMGSIFSIPLYRF-NENAFL 186

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
               ++    IG                 I L++G E +GL          +A +   G 
Sbjct: 187 DWSTNFKGMIIGAHLQGAVDYRTIDFKGPIILLMGNEQQGLSNALANRCHQLARIPQNGH 246

Query: 260 IKALNVSNAAAVALYITQN 278
             +LN++ A A+ LY  + 
Sbjct: 247 ADSLNLAIATAIMLYEIRR 265


>gi|78776544|ref|YP_392859.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
 gi|78497084|gb|ABB43624.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
          Length = 249

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 106/244 (43%), Gaps = 8/244 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVK 94
           K +     + + LYG + +   L + + +I +L  +     +                V 
Sbjct: 8   KDKKAYFEKIITLYGRNVIIEVLLDNTIEIHKLHLSNSNKSDGAIETILSLAKKRDIQVT 67

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--SQLLMVLDHVNDPHNIGAILR 152
                 + +I       QG+A++         + ++N     L+ LD + +P N+G I+R
Sbjct: 68  YHDKNALSRISKNSKQDQGVAIDIIANSYKNANEIKNLKKFKLLALDGIQNPQNLGMIIR 127

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           S  A   DG+I  K+ S   S ++ K+++G L  +P    + L + L+++     +   L
Sbjct: 128 SCAAGYIDGVILPKKNSAKISPLVIKASAGTLFKLPIYYCNTLDEVLKELKDT--KIYLL 185

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           SS +KK +    + DK   +LG E  G+  + +       ++ M   +++LNV+  A++ 
Sbjct: 186 SSHAKKSIYDLRQEDKSIFVLGNESDGVSREIEALCNDSINIPMNRDVESLNVAVTASLI 245

Query: 273 LYIT 276
            ++ 
Sbjct: 246 AFMR 249


>gi|148822089|ref|YP_001286843.1| rRNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|148720616|gb|ABR05241.1| hypothetical rRNA methyltransferase (rRNA methylase) [Mycobacterium
           tuberculosis F11]
          Length = 288

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    +    +   GV  V   L +    +  L  T   LA L  D    
Sbjct: 28  DFRDLNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-G 85

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P        + +++G       LA             V  ++ + VL+ VND  N+G
Sbjct: 86  VGAPYYRASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLG 145

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           +I R+A   S D ++     +        + + G    +PY R ++    L  +   GF+
Sbjct: 146 SIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFR 205

Query: 209 TIGLSSDSKKP-LEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++       L + I    +++IAL++GAEG GL       +     + M     +LN
Sbjct: 206 LLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALWISDVRVRIPMSRGTDSLN 265

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 266 VATAAALAFYERTR 279


>gi|293609868|ref|ZP_06692170.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828320|gb|EFF86683.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123096|gb|ADY82619.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 258

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 17/262 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + S    + +   L G H   A L    +KIF L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELSNARKKHQQTVLEGTHLCLAWLQQ-QKKIFSLFTTEQALEHEDL 66

Query: 84  ----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
               + +  H F +  V  + +  + G       LA+   P  + T+D   +    ++L+
Sbjct: 67  KKITELHQGHIFVISEVLYRDLSTL-GTSLP--CLAIIDLPKTASTIDYNVD---TLILE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           ++ DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L
Sbjct: 121 NIQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDIL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K           SS     L  +  +     ILG EG+G      + A     +  PG 
Sbjct: 181 PKFQ---IPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALDHA-QSVTIPQPGG 236

Query: 260 IKALNVSNAAAVALYI--TQNH 279
            ++LNV+ A ++  +    Q  
Sbjct: 237 QESLNVAIAGSICFFEMVRQRQ 258


>gi|121708633|ref|XP_001272196.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
           NRRL 1]
 gi|119400344|gb|EAW10770.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
           NRRL 1]
          Length = 495

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 126/347 (36%), Gaps = 77/347 (22%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRN-HRDYKKMQSFNQKSRHTSQ------PENLFLYGVHT 56
           +   K E    +K +   KL+R  HR  + M  F +             P + FLYG   
Sbjct: 130 VEASKEEDPPKMKRAGRMKLKRGVHRFTETMPEFLKHHIKVPDFISHATPASQFLYGTSA 189

Query: 57  VSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVK--TVPPQTIDKIVGKE 108
           V AAL    R++++L   +     L           L     VK        +   +   
Sbjct: 190 VEAALRCGRRQMYRLYIYQGDTDELGSNRSKLRKLALSKNIKVKMAYAGWDRLFDQMSSG 249

Query: 109 AVHQGLALETAPLLS---------PTLDA------------------------------- 128
             H G  L+ +PL           P+LD                                
Sbjct: 250 RPHNGCILDASPLPVLPIKSLCAVPSLDVNEFRVTLAAQSREEALVNSTNDRIEIRHPPN 309

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   ++++LD + D  N+G I+RSA     D I+   R     S V  K+++GA E++P
Sbjct: 310 RRRYPVIILLDGIVDKGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPVTIKASAGAAENMP 369

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEI--------KNDKIALILGAEGK 238
            ++++N  D +Q+  + G+Q     +       L+                 L+LG+EG 
Sbjct: 370 MLKVTNEVDFIQQSKANGWQFYAADAPVLGATYLDNFDMAMTRNPLTQAPSVLMLGSEGF 429

Query: 239 GLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273
           GL P  +  A S+  +              P  + +LNVS AAA+ +
Sbjct: 430 GLSPHIKSQADSIVSIPGARAPTEWGTDSDPARVDSLNVSVAAAILM 476


>gi|215430536|ref|ZP_03428455.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
 gi|289753732|ref|ZP_06513110.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
 gi|289694319|gb|EFD61748.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis EAS054]
          Length = 260

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 7/243 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V+AAL      + ++  T+ A  R +      H   V  V  +   
Sbjct: 21  RRRAGRFLAEGPNLVAAALARG--LVREVFVTEVAARRHELLLA-AHEASVHLVT-ERAA 76

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K +       GL        +   D +  S  L+ V   + +P N G ++R A A     
Sbjct: 77  KALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAA 136

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R     +    ++++G++  IP +   ++  A+  + + G Q +  + D +  L+
Sbjct: 137 VILAGRSVDPCNGKCLRASTGSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALD 196

Query: 222 QEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +  A + G E  GL  +    A    H+ M G  ++LNV+ AAA+ LY +   
Sbjct: 197 DADRLLAEPTAWLFGPEAHGLSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARA 256

Query: 280 FAK 282
             +
Sbjct: 257 LGR 259


>gi|291618555|ref|YP_003521297.1| YfiF [Pantoea ananatis LMG 20103]
 gi|291153585|gb|ADD78169.1| YfiF [Pantoea ananatis LMG 20103]
 gi|327394935|dbj|BAK12357.1| tRNA/rRNA methyltransferase YfiF [Pantoea ananatis AJ13355]
          Length = 377

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 14/247 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVP 97
              + E   +YG +   A   +    I +       T      L W A     + V  V 
Sbjct: 134 RRQRLEETRVYGENACQALFQSRPECIVRAWFVQSVTPRFRDALRWLAANRKAYHV--VD 191

Query: 98  PQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
              I K  G E  H G+       +    +  L+   +   ++ L+ V++PHN+GAI+RS
Sbjct: 192 DAEITKASGTE-HHGGVCFLIKKRMGMDVAEWLNKAESKDCVLALEDVSNPHNLGAIMRS 250

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   G++     S  ES    ++A G  EH+  I  +   + L+     G+  +  S
Sbjct: 251 CAHFGVKGLLVNDA-SLLESGAAVRTAEGGAEHVQAISGATFNEGLEAFRKAGYTIVTTS 309

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           S     L   +   K+ L+LG E +GL   T +       +   G +++LNVS A  V L
Sbjct: 310 SHQGTSLSDAVLPAKMVLVLGQEREGLSDSTFQQGDMSLSIGGTGNVESLNVSVATGVLL 369

Query: 274 --YITQN 278
             +  QN
Sbjct: 370 AEWWRQN 376


>gi|119357948|ref|YP_912592.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
 gi|119355297|gb|ABL66168.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
          Length = 268

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 107/253 (42%), Gaps = 13/253 (5%)

Query: 32  KMQSF--NQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDANLP 88
           K++ F   Q+ ++  Q       G+ TV     N P   +   L  +     L     +P
Sbjct: 13  KLRRFVKLQEKKYRDQDGLFLAEGLRTVRELCQNIPDESMLLALLLREGEIGLGGFPEIP 72

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLA-----LETAPLLSPTLDAVRNSQLLMVLDHVND 143
               +  +  +    ++   A  QG+       + +       D  +   LL+ LD V D
Sbjct: 73  ED-KLYVMNSEQCS-LLSSTAAPQGVIGVFRQQQVSRYPCGFKDEKKGRSLLIALDEVQD 130

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A  F  D +I +   +   +A + +S++G+L  +P+  +  L  AL+++ 
Sbjct: 131 PGNVGTILRTAAWFGADALICSTGTADRYNAKVVRSSAGSLYALPHYTVERLDLALEELA 190

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---I 260
           + G+  I  S D +          K  L++G E  G+    Q  A  +  +   G    +
Sbjct: 191 ASGYAIICSSLDGEDFRSFVSWPQKQVLVIGNEANGVSRVVQNLAERLVRIPHGGGKSRV 250

Query: 261 KALNVSNAAAVAL 273
           ++LN S +AA+ +
Sbjct: 251 ESLNASVSAAILM 263


>gi|307325496|ref|ZP_07604698.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306888965|gb|EFN19949.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 272

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 7/239 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     + +           G   +  A          LL++K      D   ++P 
Sbjct: 18  YTGLTDVELRRKREPAEGLFIAEGEKVIRRARLAGYEMRSMLLSSKWVDVMRDVIEDVP- 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIG 148
             PV  V P+  +++ G   VH+G          P  ++ ++N++ + +++ VND  N G
Sbjct: 77  -APVYAVSPELAERVTGYH-VHRGALASMQRKPLPDAESVLQNARRVAIMESVNDHTNTG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI RSA A   D ++ +   +        K + GA+  +PY R+ +    L+ +   GF+
Sbjct: 135 AIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLESWPRGLEAVRDAGFK 194

Query: 209 TIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + L+ D K   ++    +  +++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 195 ILALTPDEKATTIDDAAPHRLERVALMLGAEGDGLSTQALMAADEWVRIPMAHGVDSLN 253


>gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 261

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 107/260 (41%), Gaps = 11/260 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--W 83
            +   K+++   +  R       +F  GVH V  +L +      ++  T+  + +     
Sbjct: 8   ENPLIKEIKKIKETQRRK-----IFFEGVHLVETSLVSDYVFTEKVFVTEKFIEKQKNFL 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           +       PV  +  + + K +      QG+    A      ++ + N   +++ D + D
Sbjct: 63  EILQEKKIPVIIIS-EKVAKTISDTVTPQGVFA-IADFKIKNINDLSNPTFIVIADRIQD 120

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIG I+R+A AF  + ++ T       S    ++++G++  +P I+++ + +  + + 
Sbjct: 121 PGNIGTIIRAAEAFGAEAVLVTHGTCNPFSNKALRASAGSIFFLPVIKVT-VKEIEEFVS 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            +G   +     +            +A++ G E KG+    +    +   +   G  ++L
Sbjct: 180 KYGLNLVITDLKATISSFNMDFTKPLAIVFGNESKGVSQDLRAIKHTSCKIPHKGKAESL 239

Query: 264 NVSNAAAVALYI-TQNHFAK 282
           NV+ AA   LY   +  F K
Sbjct: 240 NVAMAATAILYEILRQRFLK 259


>gi|319442536|ref|ZP_07991692.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 281

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 108/266 (40%), Gaps = 19/266 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D + + S +++         +   G + V   L      +  ++     L  L+  A+  
Sbjct: 17  DIRDLNSSDRRPDLPGGRGLVIAEG-NLVVPRLAASRFPVRCVMGFARRLEELEDAASAD 75

Query: 89  -------HPFPVKTVPPQTIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQLLM- 136
                     P+  V  + + ++ G + +H+GL         P +   LD +     ++ 
Sbjct: 76  PAVAAGLADVPIYEVSREVLAEVAGFD-MHRGLVAAADRVGEPTVGEVLDGLDEDNRVIG 134

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI---- 192
           VL+ V D  NIGA+ R+A       ++     +      + + + G +  +P+  +    
Sbjct: 135 VLEGVGDHENIGALFRNAAGLGVGAVLLGAGCADPLYRRVVRVSMGHVLRVPFAHVPGKP 194

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSM 251
           +     L  +   G++ + ++ ++   L   ++  DK+A+++GAEG GL       A   
Sbjct: 195 TTWQRGLADLQERGYRVVAMTPNTDNTLADAVRGADKVAVMVGAEGPGLTEHAMRAADVR 254

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
           A + M     +LNV+ +AAV  Y  Q
Sbjct: 255 AKIPMSPGTDSLNVATSAAVGFYAAQ 280


>gi|251788493|ref|YP_003003214.1| putative methyltransferase [Dickeya zeae Ech1591]
 gi|247537114|gb|ACT05735.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
          Length = 397

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 153 RRQRAEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFRDALRWMAANRKAYHVVEDD 212

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + +  G E  H G+           ++  L     +  ++ L+ V +PHN+G I+RS  
Sbjct: 213 ELVRASGTE-HHGGVCFLIKKRQGLDVAAYLREAGETDCVLALEDVGNPHNLGGIMRSCA 271

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I    L DAL +  + G+  +  SS 
Sbjct: 272 HFGVKGVLVNDA-SQLESGAAVRTAEGGAEHVKAISAEGLVDALAQFRAAGYTIVTTSSH 330

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L +     K  ++LG EG GL     +       +   G +++LN+S A  + L  
Sbjct: 331 KGTTLSKVALPAKSVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 390

Query: 274 YITQNH 279
           +  Q+H
Sbjct: 391 WWRQHH 396


>gi|13508094|ref|NP_110043.1| tRNA/rRNA methyltransferase [Mycoplasma pneumoniae M129]
 gi|2500862|sp|P75424|Y355_MYCPN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
           homolog
 gi|1674172|gb|AAB96129.1| tRNA/rRNA methyltransferase-like protein [Mycoplasma pneumoniae
           M129]
          Length = 242

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 15/239 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            E  FL+G      AL+N   +I ++  +      L            +    Q   +  
Sbjct: 5   QETSFLFGSKAFLEALDN-QLQIKKVNLSDKHQKLLGLIK--KRGLRYEMHSSQWFHQQF 61

Query: 106 GKEAVHQGLALETAP-LLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +   HQ       P  +  T++ +      +++  L++L  + DPHN GAILR+ +A  
Sbjct: 62  -RHINHQEFVCVINPNQMLKTIEQLIQITDSKSTSTLVMLHEIQDPHNFGAILRTCMAAE 120

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK- 217
            DGII  K      ++ + +++ G + +   ++++NL+ A+  +   GF T+  + D + 
Sbjct: 121 VDGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERL 180

Query: 218 --KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K   Q   + +I L+ G E KGL     + A     + M   + +LNVS A  + L+
Sbjct: 181 KPKDYRQVDFDKRILLV-GNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 238


>gi|317124864|ref|YP_004098976.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315588952|gb|ADU48249.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 271

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 4/241 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R   +           +  AL    R    L+A +      D  A+  
Sbjct: 15  DYVSLTDVALRRRAEPERGLYIAESEKVIRRALGAGHRPRSFLMAERWLTDLADVVADAE 74

Query: 89  -HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            H  PV       I+++ G       LA    P L      V +++ ++VL+ + D  N+
Sbjct: 75  SHDVPVFVGEHDVIERLTGFHLHRGALASMQRPGLPEVASLVADARRIVVLEDIVDHTNV 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+ RSA A   D ++ T R +        + + G +  +P+ RI      +  + S GF
Sbjct: 135 GAVFRSAAALGVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIDPWPGGMAVLQSHGF 194

Query: 208 QTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               L+ SD    L+  +     K+A++LGAEG GL   T   A  +  + M G + +LN
Sbjct: 195 TVAALALSDDAVALDVLEAAPPTKVAVVLGAEGDGLGGTTVAAADVVVRIPMAGGVDSLN 254

Query: 265 V 265
           V
Sbjct: 255 V 255


>gi|118475710|ref|YP_891491.1| RNA methyltransferase [Campylobacter fetus subsp. fetus 82-40]
 gi|261886292|ref|ZP_06010331.1| RNA methyltransferase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|118414936|gb|ABK83356.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 226

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L     K+  +   K+ + +  ++  +     +  V  +    +  + 
Sbjct: 1   MIIYGKQLFLHLLEKHKEKLINIYLAKD-IEKDIFNKIVKSGVKIHKVDNKKAQALA-RG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG   E       +L+ ++    L+VL  ++D  NIG+I+R+  A    G+I   + 
Sbjct: 59  GNHQGFLAEVCEFEFASLNEIKKQDFLVVLYGLSDVGNIGSIVRTTYALGGGGVIMISKS 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +  E   + +++S A   +P   +S+    L ++   GF+  G  +  K P  +     K
Sbjct: 119 ASMEG--IIRASSAAAYELPITLVSDGLSLLNELKQLGFKIYGSDAKGKNP-SECKFGKK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L++G+EG+G+  K  E       ++M     +LNVS A  +  
Sbjct: 176 TVLVMGSEGEGIPRKALEKCDENLGINMREGWDSLNVSVAFGILF 220


>gi|190575636|ref|YP_001973481.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190013558|emb|CAQ47193.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 277

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 103/241 (42%), Gaps = 10/241 (4%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKI 104
           + L LYG + V A      + + +L      + R+       + +    + V    ++K+
Sbjct: 37  DELRLYGWNAVQALFAKRPQALRKLYLVDALIPRMQPVLKWCVANRVGYRVVEEGDLNKL 96

Query: 105 VGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                 H+GL  +       PL     D  +   L + LD V +PHN GAILRSA  F  
Sbjct: 97  AATT-HHEGLVADVLRAPVVPLAQWLADLEQGPVLALWLDGVGNPHNFGAILRSAAHFGV 155

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             ++     + + S   A+ A G  E +P +++     A+ ++ S GF       +    
Sbjct: 156 KALLLPAGSTLALSGAAARVAEGGAESVPLVQLPETAQAMAQLRSAGFGLAATLVEGGDD 215

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277
           + +    +++  ++GAEG+G+             +   G +++LNV++A AV L  + ++
Sbjct: 216 VFRASLPERLVYVMGAEGEGMDRGLAGQCDLQVSIPGSGAVESLNVASATAVLLAQWASR 275

Query: 278 N 278
            
Sbjct: 276 R 276


>gi|183220443|ref|YP_001838439.1| putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910556|ref|YP_001962111.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775232|gb|ABZ93533.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778865|gb|ABZ97163.1| Putative rRNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 277

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 114/268 (42%), Gaps = 13/268 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--------IFQLLATKNA 77
           ++   K +    +K R+  + +  F+ G   +  A+              I  L  +   
Sbjct: 12  SNPKVKWVAGLKEK-RNRDEEKKFFIEGYREIKKAITGNPNSPIPCLPVNITSLFISPEC 70

Query: 78  LARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-- 134
               + ++ +     P+  +P +  +KI  ++     +A+   P      ++++ S+   
Sbjct: 71  FLGENEESLIASIRCPIFELPRKIFEKISYRDRPDGLIAVAETPSAMVPWNSLQTSETNP 130

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++++ V  P N+G ILR+A       +I T       +  + ++++G +  +P   I +
Sbjct: 131 ILIIEGVEKPGNLGTILRTAEGAGVGLVIVTDPRIDLFNPNVVRASTGTIFTLPV-YIGD 189

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           LT+ L +    G++   ++ + K         +K   + G+E  GL P  +E A +  +L
Sbjct: 190 LTEVLTEFKKQGYKRYAVTPEGKTLYTSVNLKEKSVFLFGSEQYGLSPLAKELADTTLYL 249

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M G   +LN++ +  + LY +    +K
Sbjct: 250 PMFGEADSLNLAMSCGIVLYESIRQRSK 277


>gi|159901149|ref|YP_001547396.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894188|gb|ABX07268.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 262

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 15/255 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALN--NPSRKIF---QLLATKNALARLDWDA 85
           K ++S  +  +         + GV  V  ALN   PS  ++   QL +T+     LD  A
Sbjct: 15  KYLRSLLRSRKDRHSERRFVVEGVRLVGEALNFATPSLLLYVPEQLASTERGQQLLDLIA 74

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            LP+ F      P  +  +   E   QG+     P+   T    +++ L+++LD V DP 
Sbjct: 75  QLPNAFA---TTPAILAGLSDVE-TPQGIIA-VIPMPQFT---SQSASLILMLDGVQDPG 126

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G +LRSA A     ++     +   S  + +S  G    +P +   N   AL  +   
Sbjct: 127 NVGTLLRSAEAAGVGQVLCLPGTADVWSPKVVRSGMGVHFRLPIVDGLNWETALP-LIEH 185

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             Q      DS    +Q        LI+G E  G+   T   + S   + M G +++LN 
Sbjct: 186 CQQRFAAVQDSPLSYDQADLTQPTVLIIGNEANGVSATTLSYS-STITIPMLGSLESLNA 244

Query: 266 SNAAAVALYITQNHF 280
           + A +V L+      
Sbjct: 245 AVAGSVLLFEAARQR 259


>gi|306837891|ref|ZP_07470751.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
 gi|306406979|gb|EFM63198.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
          Length = 228

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 11/225 (4%)

Query: 63  NPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL----E 117
           +   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+      +
Sbjct: 8   SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 66

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           + P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +           
Sbjct: 67  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 126

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG
Sbjct: 127 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 186

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +GL  +  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 187 EGLPSRLLERL-KTARIPMSTTFDSLNVATASGIAL----SRFSK 226


>gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42]
 gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42]
          Length = 286

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 98/282 (34%), Gaps = 22/282 (7%)

Query: 16  KDSHYAKLRR----------NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           KD H    RR           +   K +++   K +   +       G+  V  A+    
Sbjct: 3   KDFHDQGPRRVGQVKEVTSLANPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGW 61

Query: 66  RKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPL 121
             I  L+  K A  +   +            V  V  + I  I  ++     + +     
Sbjct: 62  -TIRTLVYAKAAKGKPLVEQMAARTVASGGLVLEVSEKVIAAITRRDNPQ--MVVGIFEQ 118

Query: 122 LSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
               L  +R    +  + LD V DP N+G I+R+A A    GII     +   S    ++
Sbjct: 119 RWAPLKGIRPQEGETWVALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRA 178

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGK 238
             G++  +P  R +   + L    S G   +                     L++G E  
Sbjct: 179 TMGSVFAVPVARAT-PEEFLAWRKSAGVSIVATHLAGAVDYRTIDYRKKPTVLLMGNEQS 237

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           GL  +    A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 238 GLPDQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|271968868|ref|YP_003343064.1| tRNA/rRNA methyltransferase SpoU [Streptosporangium roseum DSM
           43021]
 gi|270512043|gb|ACZ90321.1| tRNA/rRNA methyltransferase (SpoU) [Streptosporangium roseum DSM
           43021]
          Length = 292

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 27/274 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++    +    ++       G   +  A+      +  +L T+     L  D    
Sbjct: 11  DYANLRDVELRKSMEAEHGLFIAEGEKVIRRAVAAGY-PVRSVLLTRRWADPLA-DLLDG 68

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------------R 130
               V  V    ++ I G   VH+G          P +D V                  R
Sbjct: 69  LGDRVYVVDDDVMEGIAGF-PVHRGALAAMERRELPPVDEVLRGASHATAGAVDEGGPVR 127

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             + L+VL+ + D  N+GAI R A A   DGII + R +        K + GA+  IPY 
Sbjct: 128 PPRRLLVLEDLVDHGNVGAIFRCAAALGVDGIILSPRCADPLYRRSVKVSMGAVFAIPYA 187

Query: 191 RISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           R+ N  D L+++ + GFQT+ L+ D    P++     +++AL+LG+EG GL  +    A 
Sbjct: 188 RMGNWYDGLEEIRAAGFQTLALTPDQDATPMDTVEMRERVALLLGSEGDGLSSRWLREAD 247

Query: 250 SMAHLH-----MPGIIKALNVSNAAAVALYITQN 278
               +      M   + +LNV  AAA+A +    
Sbjct: 248 EQVCIPMSPTAMASGVDSLNVVAAAAIACHGLMR 281


>gi|148560365|ref|YP_001259457.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148371622|gb|ABQ61601.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
          Length = 226

 Score =  186 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 11/225 (4%)

Query: 63  NPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL----E 117
           +   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+      +
Sbjct: 6   SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 64

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           + P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +           
Sbjct: 65  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 124

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG
Sbjct: 125 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 184

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +GL  +  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 185 EGLPSRFLERL-ETARIPMSKTFDSLNVATASGIAL----SRFSK 224


>gi|71893988|ref|YP_279434.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
 gi|71852115|gb|AAZ44723.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 233

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 107/238 (44%), Gaps = 16/238 (6%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G ++++ A+ N    ++I+ L  T + +              VK V    +DK+V  
Sbjct: 4   YICGRNSLADAIKNGFIFKEIYLLKPTNDQIFLKQK---------VKIVSRDFLDKLV-- 52

Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
              HQG            +D +     +++++LDH+ D +N+G I+R+A  F    II  
Sbjct: 53  RLNHQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILP 112

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI 224
           KR +   +    K +SG    + +I ++++  A+ K+    F         K   +++  
Sbjct: 113 KRRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQ 172

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            N   A+ILG EG G++  +   +     + + G + +LNV+ A  + L+  + +  K
Sbjct: 173 FNYPCAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230


>gi|226952113|ref|ZP_03822577.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226837141|gb|EEH69524.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 258

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 15/261 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +KIF L  T+ ALA  D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGSHLCIAWLQQ-QKKIFSLFTTEQALAHTDL 66

Query: 84  ----DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
               + +  H F +  V  + +  + G       LA+   P  + T+D   +    ++L+
Sbjct: 67  QNVMELHQGHVFVISEVLYKDLSTL-GTTLP--CLAIIDLPKTASTIDFSVD---TLILE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           ++ DP N+G +LRSA A +   I+ T+  +   S  + ++  GA   +       L + L
Sbjct: 121 NIQDPGNVGTLLRSAAAANIKQIVCTQGSATLWSPRVLRAGMGAHFSLNCFENFQLNEIL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K           SS     L  +        ILG EG+G      E A     +  PG 
Sbjct: 181 PKFQ---IPVFVTSSHRSTSLYSKDLTQPCVWILGNEGQGASEYALEHA-QAVTIPQPGG 236

Query: 260 IKALNVSNAAAVALYITQNHF 280
            ++LNV+ A ++  +      
Sbjct: 237 QESLNVAIAGSICFFEMVRQR 257


>gi|238765059|ref|ZP_04625995.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           kristensenii ATCC 33638]
 gi|238696745|gb|EEP89526.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           kristensenii ATCC 33638]
          Length = 365

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 236

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 237 AHFGINGVLLQDP-AVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 295

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 296 HKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNVSVATGILLA 355

Query: 274 -YITQN 278
            +  QN
Sbjct: 356 EWWRQN 361


>gi|187928382|ref|YP_001898869.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12J]
 gi|187725272|gb|ACD26437.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12J]
          Length = 260

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 7/258 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++H  +     L GVH V A L+     +  L++ ++   R   
Sbjct: 6   SRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPVQCLVSERHV--RHPE 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A +       TV     D + G+   V  G+ L      +            ++LD + 
Sbjct: 64  VAAVLDRVDPDTV-ILLADNLFGQLTTVVNGVDLMALVETAEGKLPQTIDADCVILDGIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++
Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFQSVHSRL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  SS +K+ +     +  +  + G EG G+  +     T+   +  PG +++
Sbjct: 183 R---VPLLATSSHAKQAVFDVPLSSPVGWVFGNEGAGVSQEWLSAVTTPVTIPQPGGMES 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ AAA+ L+      
Sbjct: 240 LNVAAAAAICLFEAVRQR 257


>gi|332292916|ref|YP_004431525.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171002|gb|AEE20257.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 261

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 96/256 (37%), Gaps = 3/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++     KSR   +     + GV  +  A+      I ++   +  ++  +   
Sbjct: 9   QNPAVKRLLQLQDKSRARKKEGGFIIEGVREIELAIAAGYE-ITEVYFNEAVISEDEVAG 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     + ++  +   K+  +      +A   A   +    A+  + LL++ +    P 
Sbjct: 68  MVNGTAMMTSLSTEVYQKVAYRAGTEGIIAFAKAETKTLQELALPENPLLLIAEAPEKPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR+A A   D +I     +   +  + +S+ G +        +   + +  +   
Sbjct: 128 NIGALLRTADAAGVDAVIIANPKTDLYNPNIIRSSVGCVFTTQIATGT-TAEVISFLQEK 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G                +      A+++G E  GL  + + T  +   + M G I ++NV
Sbjct: 187 GIAVYSAILQEAVDYAAQDYTTPTAIVVGTEATGLSQEWR-TVGTNIKIPMRGKIDSMNV 245

Query: 266 SNAAAVALYITQNHFA 281
           S AA + ++  +    
Sbjct: 246 SVAAGILVFEARRQRG 261


>gi|319954252|ref|YP_004165519.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422912|gb|ADV50021.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 269

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 102/269 (37%), Gaps = 6/269 (2%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +S        +   K +     KSR   +  N  L G+     AL      I  +   + 
Sbjct: 2   NSTKHISSLQNTLIKNVLVLKDKSRERKKTGNFILEGIREFELALK-GFYTIETVFYAEG 60

Query: 77  ALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNS 132
                  +   A L +   + +V  +   KI  +E     LA  +    +   L     +
Sbjct: 61  LFPESKIEELTATLAYQPVLISVSKEVYQKIAYRETTEGILAIAKAKTHILSELKFKNKN 120

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++V +    P NIGA+LR+A A + D +I     +   +  + +S+ G +   P    
Sbjct: 121 PLVLVAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSSVGCVFTNPIA-T 179

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            N T+ +  +          +  + K           A+++G E  GL  +  E AT   
Sbjct: 180 GNTTEIIAFLKENNINIFCAALTASKVYTNTSFKTPSAIVVGTEATGLSEEWLENATQNI 239

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M G I ++NVS +AA+ ++  +   +
Sbjct: 240 IIPMEGEIDSMNVSVSAAILIFEAKRQRS 268


>gi|294790826|ref|ZP_06755984.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
 gi|294458723|gb|EFG27076.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
          Length = 284

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 60/260 (23%), Positives = 107/260 (41%), Gaps = 13/260 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DA 85
           Y ++     ++R               +  AL    + +  L+      +  D     + 
Sbjct: 20  YTRLTEVQLRNRLEPDKGIFIAESPKVIDRALAAGVQPLSFLVEGSWLDSMKDLFSAAEK 79

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
              +  PV       + KI G       L+      L    D  R++  + VL+++ D  
Sbjct: 80  RWGYDIPVFVAGFDLLHKITGYRLHRGALSAMRRWKLPTVEDICRDAHRVAVLENIVDYT 139

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDA----L 199
           N+GAI+RSA A + D ++ T   +       A+ + G +  +P+ RI   N        +
Sbjct: 140 NVGAIMRSAAALNVDAVLLTPSCADPLYRRAARVSMGTVFQVPWTRIGGDNPHAWPQPSI 199

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHM 256
            ++   GF T+ ++  D    L+Q +    D++ALI G EG GL  +T   A     + M
Sbjct: 200 HQLTDLGFTTVSMALTDDSISLDQLVSRKIDRLALIFGTEGDGLSRRTLAAADLTVKIPM 259

Query: 257 PGIIKALNVSNAAAVALYIT 276
              + +LNV+ ++AVA Y T
Sbjct: 260 SHQVDSLNVAASSAVAFYAT 279


>gi|28493313|ref|NP_787474.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
 gi|28572576|ref|NP_789356.1| rRNA methyltransferase [Tropheryma whipplei TW08/27]
 gi|28410708|emb|CAD67094.1| putative rRNA methyltransferase [Tropheryma whipplei TW08/27]
 gi|28476354|gb|AAO44443.1| tRNA/rRNA methyltransferase [Tropheryma whipplei str. Twist]
          Length = 263

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 117/247 (47%), Gaps = 14/247 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTI 101
           +Q E+  + G++ V  AL      I  L+    AL      + + +    P   VP  T+
Sbjct: 19  NQIEHNTIVGINPVYEALRERVPSIKLLIDKSFALKHNPRVSKIMNYSDIPHIFVPRSTL 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           D++   +  HQG+AL          + +         L +  D V DP N+GAI+RSA A
Sbjct: 79  DRLT--DLPHQGVALLCKSYRPSRAEELLKQTWPRPPLFIACDQVTDPRNLGAIVRSAAA 136

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F    ++  K  S   + ++ K+++GA+  +P   + NLT  + +   +G   +GL S+S
Sbjct: 137 FRASAVLIGKNRSARVTPMVWKASAGAVGKLPIAEVGNLTRYIVRFREYGGFVLGLDSNS 196

Query: 217 KKPLEQEIKNDK-----IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           K P+++ +   K     + LI+G+EG G+    ++    +  +     + +LNVS A ++
Sbjct: 197 KTPIDKSVFLKKEDKRALLLIVGSEGSGISHLVKKHCDELLTIPTDASVDSLNVSVAVSI 256

Query: 272 ALYITQN 278
           ALY  Q 
Sbjct: 257 ALYELQR 263


>gi|323466130|gb|ADX69817.1| TrmH family RNA methyltransferase [Lactobacillus helveticus H10]
          Length = 255

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 102/245 (41%), Gaps = 17/245 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H    A+ +   K   LL T+ AL + + D ++        +  + I
Sbjct: 23  YRDEEGRYLIEGFHLFDEAIKSGQ-KYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAVAF 157
            + +      Q + +         +D  R         ++LD++ DP N+G I+R+A A 
Sbjct: 82  ARHLSSTKNSQEIFMVLK------IDQPREFPFNYGKWVLLDNLADPGNVGTIIRTADAA 135

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-S 216
             DG++ + + +   ++   ++  G+  HI  I+  +L D +               D +
Sbjct: 136 GFDGVVLSPKSADLYNSKTQRAMQGSQFHIDLIK-RDLADVITDFQDAAIPVYASMLDKT 194

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K L    K  ++ALI+G E  G+       +    ++ + G  ++LN + AA + +Y  
Sbjct: 195 AKQLPDFEKVSQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNAAVAAGIMIY-- 252

Query: 277 QNHFA 281
             HFA
Sbjct: 253 --HFA 255


>gi|300933427|ref|ZP_07148683.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 278

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 105/246 (42%), Gaps = 15/246 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
               G + V++ALN+ S  + ++  T++A  R     +     P+  +  +  D +    
Sbjct: 32  FLAEGENAVTSALNHGS--VIEIFVTESAAQRFSSLLDATSSTPISFISDRAADHLSETV 89

Query: 109 AVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                 AL   + + L +    A +N  L+ V     +P N G ++R + A    G++  
Sbjct: 90  TSTGLFALCNSQLSDLTAVVESAKKNLPLIAVPVETGEPGNAGTLIRVSDALGAAGVVFA 149

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-- 223
            +          ++++G++ H+P  R + + D + ++H  GF  +  + D    LE+   
Sbjct: 150 GQSVDPLGGKAVRASAGSIFHLPVAREAGVADVIDRLHEEGFTVMATAMDGDVSLEEAST 209

Query: 224 -------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  I     A + G E  GL    Q+ A     + M G  +++N++ AA++ LY +
Sbjct: 210 SEPGEKPILAQPTAWLFGNEAHGLG-HWQDLADLRISIPMRGRAESMNLATAASICLYQS 268

Query: 277 QNHFAK 282
            N  A+
Sbjct: 269 ANALAR 274


>gi|296122015|ref|YP_003629793.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296014355|gb|ADG67594.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 262

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/258 (24%), Positives = 100/258 (38%), Gaps = 38/258 (14%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQ------------- 99
           H+V AAL      + +++ T N  +           H  P++T  P              
Sbjct: 9   HSVLAALQYRPHDVLEIITTANPSSAWSEVLEQARVHRIPIRTALPSSGSERPASGKDRG 68

Query: 100 -TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------------------LLMVLDH 140
              ++    EA       + APL    L  +                      + + LD 
Sbjct: 69  GKFERQSSSEAT----VRDRAPLTVEQLFEIAPPGPLAQKSDASGGVESNRHGIWLALDC 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DPHN+GA+ R+A  F   GII T+  S   S      ++G LE IP+ +  NL  AL+
Sbjct: 125 LQDPHNVGAVFRAAAFFGVRGIIATRDRSAPLSGTAYDVSAGGLESIPFAQPPNLARALE 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                G   +G S  +++PL     +    +++G E  GLR  T E    +  +   G +
Sbjct: 185 LAKKSGVWVLGTSEHAQQPLSSIKADRPWLIVIGNEEGGLRRLTLELCDEVCTIPSQGAV 244

Query: 261 KALNVSNAAAVALYITQN 278
            +LNVS A  + LY    
Sbjct: 245 GSLNVSVATGILLYALSR 262


>gi|15964143|ref|NP_384496.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307301288|ref|ZP_07581050.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307317959|ref|ZP_07597396.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti
           1021]
 gi|306896361|gb|EFN27110.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306903744|gb|EFN34331.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 288

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 103/260 (39%), Gaps = 10/260 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++  QK +H  +  +    G+  V  AL+    KI  L+  K A  +   +  
Sbjct: 26  NPIVKDIRALTQK-KHRDETRSFMAEGLKLVIDALDLGW-KIKTLVYAKAAKGKPQVEQV 83

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHV 141
                     V  V  + I  I  ++   Q +        SP  D   +  +  + LD V
Sbjct: 84  AAKTVARGGLVLEVNEKVISTITRRD-NPQMVVGIFEQRYSPLRDIHPQEGETYVALDRV 142

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    GII     +   S    ++  G++  IP  R +N  D ++ 
Sbjct: 143 RDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPIAR-ANTEDFIRW 201

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             + G Q +                +  + L++G E  GL  +    A ++A +   G  
Sbjct: 202 QRAAGVQVVATHLAGSVDYRTIDYKSKPVVLLMGNEQAGLPVELAREAGALARIPQAGRA 261

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN++ A  + L+  + H 
Sbjct: 262 DSLNLAIATGIMLFEARRHL 281


>gi|56478867|ref|YP_160456.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56314910|emb|CAI09555.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 261

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 107/263 (40%), Gaps = 12/263 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K++ +    +R         L G H V AAL+     + +L+A+   L R + 
Sbjct: 6   SRDNPAVKRLHALAHSARDRRSEGRTLLDGAHLVRAALDAGW-PLRELVASDQGLGRAEI 64

Query: 84  DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              L      P   +       +   +     LA+   P+  PT     +   L+VLD V
Sbjct: 65  ADLLERCTGVPAIHLTDALFAHVSPVDTPSGLLAVIDLPVPPPTRAFAES---LLVLDGV 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G ILR+A A     ++ T   + + S  + ++  G    +     +++      
Sbjct: 122 QDAGNLGTILRTAAAAGMRDVLLTPGCAQAWSPRVLRAGMGGHFCLRLYEHADVAVL--- 178

Query: 202 MHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +  +  Q +     +    L +      +A + GAEG+GL       AT    + MPG +
Sbjct: 179 LQGYPGQILATGLGAGARGLYEMDLRGTVAWLFGAEGRGLSMAVAALATDTVVIPMPGAV 238

Query: 261 KALNVSNAAAVALYI--TQNHFA 281
           ++LNV+ AAAV L+    Q   A
Sbjct: 239 ESLNVAAAAAVCLFEQVRQRRVA 261


>gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652]
 gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652]
          Length = 286

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 100/281 (35%), Gaps = 20/281 (7%)

Query: 16  KDSHYAKLRR----------NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           KD H    RR           +   K +++   K +   +       G+  V  A+    
Sbjct: 3   KDFHDQGPRRVGQVKEVTSLANPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGW 61

Query: 66  RKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPL 121
             I  L+  K A  +   +            V  V  + I  I  +E   Q +       
Sbjct: 62  -TIRTLVYAKAAKGKPLVEQMAAKTVASGGLVLEVSEKVIGSITRRE-NPQMVVGIFDQR 119

Query: 122 LSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             P  D   R  +  + LD V DP N+G I+R+A A    G+I     +   S    ++ 
Sbjct: 120 WKPLKDIRPREGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRAT 179

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKG 239
            G++  +P  R +   + L    S G   +                   + L++G E  G
Sbjct: 180 MGSVFAVPVARAT-PEEFLAWRKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSG 238

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L  +  + A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 239 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|50085696|ref|YP_047206.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531672|emb|CAG69384.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 266

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 100/259 (38%), Gaps = 11/259 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   ++     + +   L G H   + L    RKI  L  T+ AL   D+
Sbjct: 16  SKDNAKIKHLRGLIEQQSFRKKQKQTVLEGTHLCLSWLQ-EQRKIISLFTTEVALKHADF 74

Query: 84  DANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           +  +  +   +  +       +         LA+   P  S  +D  ++    ++L+++ 
Sbjct: 75  EKIIDIYQGAIFVISESLYRDLSTLGTTLACLAVIDLPQSSQAIDFKKD---TLILENIQ 131

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A +   ++ TK  +   S  + ++  GA   +       L   L++ 
Sbjct: 132 DPGNVGTLLRSAAAANIKQVVCTKGSASLWSPRVLRAGMGAHFSLYTFENIELDMILEQF 191

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                     SS     L  +        ILG EG+G        A     +  PG  ++
Sbjct: 192 ---DIPVFVTSSHHATNLYDQDLTKPCVWILGNEGQGASEYALSHA-QAITIPQPGGQES 247

Query: 263 LNVSNAAAVALYI--TQNH 279
           LNV+ A ++  +    Q  
Sbjct: 248 LNVAIAGSICFFEMVRQRQ 266


>gi|161507842|ref|YP_001577806.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
 gi|160348831|gb|ABX27505.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
          Length = 255

 Score =  186 bits (472), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 97/238 (40%), Gaps = 13/238 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H    A+ +   K   LL T+ AL + + D ++        +  + I
Sbjct: 23  YRDEEGRYLIEGFHLFDEAIKSGQ-KYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAVAF 157
            + +      Q + +         +D  R         ++LD++ DP N+G I+R+A A 
Sbjct: 82  ARHLSSTKNSQEIFMVLK------IDQPREFPFNYGKWVLLDNLADPGNVGTIIRTADAA 135

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-S 216
             DG++ +   +   +    ++  G+  HI  I+  +L D +               D +
Sbjct: 136 GFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDLADVITDFQDAAIPVYASMLDKA 194

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K L    K  ++ALI+G E  G+       +    ++ + G  ++LN + AA + +Y
Sbjct: 195 AKQLPDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252


>gi|318061734|ref|ZP_07980455.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080743|ref|ZP_07988075.1| rRNA methylase [Streptomyces sp. SA3_actF]
          Length = 296

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 23/275 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           ++ SL+       RR  +     +SF  K R           G   V  A    +  + +
Sbjct: 31  ELTSLRSPRVVAARRLAK-----RSFRGKERR------FLAEGPQAVREA----AGHLVE 75

Query: 71  LLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           + AT++A  R     D       PV +   + +  +       QG+      L +   D 
Sbjct: 76  VYATEDAARRHPELLDDARARGVPVLSASEEVLAAMADT-VTPQGVIGLCRFLDTGFADV 134

Query: 129 V-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           + R  +L+ VL HV DP N G +LR A A   D +I T       +    +++ G+L H+
Sbjct: 135 LARRPRLVAVLAHVRDPGNAGTVLRCADAAGADAVILTDASVDVYNPKCVRASVGSLFHL 194

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKP----LEQEIKNDKIALILGAEGKGLRPK 243
           P +    + +A+  +   G + +             L++       A + G E  GL  +
Sbjct: 195 PVVTGVPVEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTMGGPSAWVFGNEAWGLPEE 254

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+  A ++  + + G  ++LN++ AAAV LY +  
Sbjct: 255 TRALADAVVRVPLHGKAESLNLATAAAVCLYASAR 289


>gi|13472492|ref|NP_104059.1| hypothetical protein mlr2808 [Mesorhizobium loti MAFF303099]
 gi|14023238|dbj|BAB49845.1| mlr2808 [Mesorhizobium loti MAFF303099]
          Length = 265

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 111/262 (42%), Gaps = 12/262 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARL-DW 83
           + RD +     + + R  +  +  F+     V   L +  R     +L  +N L  L D 
Sbjct: 8   DPRDSRVAAYLDIRERDLAGRQGRFVAEGKVVLDLLLSSGRFGAESVLVLENRLGGLEDI 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLD 139
               P   PV  V    +D I G   +H+G+       T     P LDA+ +  L++VL 
Sbjct: 68  LHKAPADLPVYVVTSAVMDAIAGFH-MHRGILAIGRKATPQAPGPLLDALPDQALVLVLV 126

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + +  N+G+I R+A AF  D ++              + + GA   IP+   ++ +   
Sbjct: 127 GIANHDNMGSIFRNAAAFGADAVLMDTTCCDPLYRKAIRVSVGAALKIPFASFTDTSGFT 186

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +   GF+ + LS   +  +      +++AL LG EG+GL  +          + M   
Sbjct: 187 AMLAERGFEQLALSPRGRTDIRDAKPAERLALYLGTEGEGLPERLLARL-QTVRITMSKG 245

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LNV+ A+A+AL+    HF+
Sbjct: 246 FDSLNVAAASAIALH----HFS 263


>gi|323360047|ref|YP_004226443.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323276418|dbj|BAJ76563.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 268

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 66/255 (25%), Positives = 117/255 (45%), Gaps = 10/255 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVS-AALNNPSRKIFQLLATKNALARLDWDANL 87
           DY+ +   + + R T     L++     V   AL    R    +L  +  LA  D  A +
Sbjct: 16  DYRDLTDVSLR-RVTEPAGGLYIAESSKVLDRALRAGHRP-RSVLVQEKFLA--DALALV 71

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                +  VP +  +++ G   VH+GL      P+L+   D V  ++L++VL+ + D  N
Sbjct: 72  GEDAEIYVVPAEIAERVTGYT-VHRGLLASMHRPVLASVEDVVEGARLVVVLEDIVDHTN 130

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL-QKMHSW 205
           IGA  RSA A   D ++ T R +        + + G +  +P+ R+   ++A      + 
Sbjct: 131 IGAAFRSAAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRLPEWSEAKPLLHAAG 190

Query: 206 GFQTIGLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                   SD    L+    + ++++AL++GAEG GL       A ++  + M G + +L
Sbjct: 191 LHLAALALSDDAVTLDAFSAVGHERVALLMGAEGDGLSRGALAAADTVVTIPMAGGVDSL 250

Query: 264 NVSNAAAVALYITQN 278
           NV+ A+AVAL+    
Sbjct: 251 NVAAASAVALWELGR 265


>gi|300789799|ref|YP_003770090.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
 gi|299799313|gb|ADJ49688.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
          Length = 253

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 7/236 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG   V  AL +   ++ +++    A    A     A      PV+      +  + G 
Sbjct: 16  VYGRKPVLEALADDGLRVDKVILADTARGPGAAEIQRAAKAAGVPVQRASAHRVKVLAGN 75

Query: 108 EAVHQGLALET-APL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
               QG+  +  AP    LS  L   R    +++LD +  P N+G ILR+A A   DG+I
Sbjct: 76  GKQDQGVLADVLAPRMRALSAALADRRPPSRVLLLDGITTPANVGMILRTATAAGLDGVI 135

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R   +   ++ K+++G     P +R  +  +A + +   GF    L + ++  +   
Sbjct: 136 VPRRGVAALDPLVVKASAGVAFRAPVLRCGSAREAAEMLAEAGFGLYALGASARTTVFDV 195

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + A +LG E  G+  +  E  T    + MPG +++LNVS AAAV  +     
Sbjct: 196 DLPQRAAFVLGGETAGVGAEVGELVTEWLSIPMPGDVESLNVSAAAAVLSFELVRR 251


>gi|309782123|ref|ZP_07676853.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
 gi|308919189|gb|EFP64856.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
          Length = 260

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 107/260 (41%), Gaps = 11/260 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++H  +     L GVH V+A L+       Q L ++  +   + 
Sbjct: 6   SRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVAAYLDAGHMP-AQCLVSERHIRHPEV 64

Query: 84  DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDH 140
            A L    P  V  +      ++     V  G+  +         L    ++   ++LD 
Sbjct: 65  AAVLDRVDPDTVILLADNLFGQLT---TVVNGVDLMALVETPEGKLPQTIDADC-VILDG 120

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          
Sbjct: 121 IQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESVHS 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++       +  SS +K+ +     N  +  + G EG G+  +     T+   +  PG +
Sbjct: 181 RLQ---VPLLATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTPVTIPQPGGM 237

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AAA+ L+      
Sbjct: 238 ESLNVAAAAAICLFEAVRQR 257


>gi|183598085|ref|ZP_02959578.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
 gi|188020242|gb|EDU58282.1| hypothetical protein PROSTU_01448 [Providencia stuartii ATCC 25827]
          Length = 347

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 95/248 (38%), Gaps = 15/248 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVP 97
              + E   +YG +   A   N    I +       T      L W A     + V  V 
Sbjct: 101 RKQRLEETRIYGENACQAMFKNRPEAIVRAWFLQSVTPRFRDALKWMAANRKAYHV--VD 158

Query: 98  PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + K  G E  H G+           +   L     +  ++ L+ V +PHN+G I+RS
Sbjct: 159 DEELTKASGTE-HHGGVCFLIKKRGGMSVETYLQQAPATDCVLALEDVGNPHNLGGIMRS 217

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   G+I        ES    ++A G  EHI  I    L++ L +    G+  +  S
Sbjct: 218 CAHFGVQGVILQDAGVV-ESGAAIRTAEGGAEHIKAIDADGLSNTLSQFRQAGYTIVTTS 276

Query: 214 SD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S    + + +     K+ L+LG E  GL            ++   G +++LNVS A  + 
Sbjct: 277 SHKGSQDISKAKLPAKMVLVLGQERDGLSDSVWNEGDMSLYIGGTGKVESLNVSVATGIM 336

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 337 LAQWWQQN 344


>gi|148683794|gb|EDL15741.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
          Length = 358

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 24/224 (10%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
             +   A L   A      PV     Q +D + G + VHQG+ +E +PL     D   ++
Sbjct: 116 GLQGERAELLRVAE-ARGIPVLRPRRQKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADT 173

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                  QL +VL+ + DP N+GA++RSA     D +IT++R S   + V++K+++GA+E
Sbjct: 174 SSGDDPQQLWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAME 233

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGL--------SSDSKKPLE---QEIKNDKIALILG 234
            +      +L   LQ     G+  +G         S  SK P+    + + +    L+LG
Sbjct: 234 VMDVFATPDLPGFLQAKAQQGWLVVGTVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLG 293

Query: 235 AEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALY 274
           +EG GL  +   +   +  +    H+P  +++LNVS A  + L+
Sbjct: 294 SEGSGLSQEVFASCQLLLTILPRRHLPPGLESLNVSVATGILLH 337


>gi|239986481|ref|ZP_04707145.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
          Length = 272

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 7/240 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A          LL+ K      D    +P
Sbjct: 17  DYIGLTDVELRRRREPAEGLFIAEGEKVIRRARQTGYEMRSMLLSAKWVDVMRDVIDEVP 76

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147
              PV  V P+  +++ G   VH+G          P  D +   ++ ++V++ VND  NI
Sbjct: 77  --APVYAVAPELAERVTGYH-VHRGALASMQRKPLPAADELLATARRVVVMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAGF 193

Query: 208 QTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + + L+ D+K   +++   +  +++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 194 RLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLN 253


>gi|239501022|ref|ZP_04660332.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
          Length = 258

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 17/262 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66

Query: 84  DANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
              +     H F +  V  + +  +    +    LA+   P  + T+D   +    ++L+
Sbjct: 67  KKIIELHQGHVFIISEVLYKDLSTLGNTLSC---LAIIDLPKTASTIDYSVD---TLILE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +V DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L
Sbjct: 121 NVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDIL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K           SS     L  +  +     ILG EG+G      E A     +  PG 
Sbjct: 181 PKF---DIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGG 236

Query: 260 IKALNVSNAAAVALYI--TQNH 279
            ++LNV+ A ++  +    Q  
Sbjct: 237 QESLNVAIAGSICFFEMVRQRQ 258


>gi|154495177|ref|ZP_02034182.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
           43184]
 gi|154085727|gb|EDN84772.1| hypothetical protein PARMER_04226 [Parabacteroides merdae ATCC
           43184]
          Length = 269

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 92/235 (39%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R         +     ++ AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPDKGIFIVESPKVITRALDAGYEPLAILCEHKHITGDASDIIERCSNVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P      D  + ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGERELLATLTGYVLTRGVLCAMRRPEPRGMEDVCQKARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +     +L  +   GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMD---GSLGDLGRLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D+   ++  +     ++A+++G EG GL  +T   A  +  + M   + +LN
Sbjct: 197 ALTDNSISIDNPVLATEPRLAIVMGTEGDGLSQETIAAADYVVRIPMSHGVDSLN 251


>gi|317049240|ref|YP_004116888.1| tRNA/rRNA methyltransferase SpoU [Pantoea sp. At-9b]
 gi|316950857|gb|ADU70332.1| tRNA/rRNA methyltransferase (SpoU) [Pantoea sp. At-9b]
          Length = 359

 Score =  185 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 116 RRQRQEETRVYGENACQALFQSRPESIVRAWFVQSVTPRFRETLRWLAANRKAYHVVEDA 175

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+       +    S  L        ++ L+ V++PHN+G I+RS  
Sbjct: 176 ELAKASGTE-HHGGVCFIIKKRMGMAVSEWLSQAEAKDCVLALEDVSNPHNLGGIMRSCA 234

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I   + +  L+     G+  +  SS 
Sbjct: 235 HFGVKGLLVNDA-SLLESGAAVRTAEGGAEHVQAISGESFSAGLEAFRKAGYTIVTTSSH 293

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL +     K+ L+LG E +GL     +       +   G +++LNVS A  + L  
Sbjct: 294 EGTPLAKAELPAKMVLVLGQEREGLSDSAFQQGDMSLSIGGTGNVESLNVSVATGILLAE 353

Query: 274 YITQN 278
           +  QN
Sbjct: 354 WWRQN 358


>gi|262278148|ref|ZP_06055933.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
 gi|262258499|gb|EEY77232.1| tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus RUH2202]
          Length = 258

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 17/262 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + S    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELSNARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHEDL 66

Query: 84  DANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
              +     H F +  V  + +  + G       LA+   P  + T+D   +    ++L+
Sbjct: 67  KEIIELHQGHIFVISEVLYRDLSTL-GTSLP--CLAIIDLPKTASTIDYNVD---TLILE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           ++ DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L
Sbjct: 121 NIQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDIL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K           SS     L  +  +     ILG EG+G      + A     +  PG 
Sbjct: 181 PKF---PIPVFVTSSHHSTSLYSQDLSKPCVWILGNEGQGASDYALDHA-QCVTIPQPGG 236

Query: 260 IKALNVSNAAAVALYI--TQNH 279
            ++LNV+ A ++  +    Q  
Sbjct: 237 QESLNVAIAGSICFFEMVRQRQ 258


>gi|241758743|ref|ZP_04756856.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
 gi|241320951|gb|EER57164.1| RNA methyltransferase, TrmH family [Neisseria flavescens SK114]
          Length = 263

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 100/288 (34%), Gaps = 39/288 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +++   +     L GVH +   
Sbjct: 4   MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQTY 45

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALET 118
           L +      Q+   +     L+            +  V  + + KI           L  
Sbjct: 46  LQSGGTP-KQVYLPEKKQQHLEIQEITAQLDEGLITWVGNEALSKITS---------LTD 95

Query: 119 APLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           A  +   +D  + + L      +VL+ V DP N G ILRSA A     I+         S
Sbjct: 96  ADDVMTWIDIPQQAGLPSDGDCVVLERVQDPGNAGTILRSAAAAGIRQIVCGNDSVDIWS 155

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALI 232
             + ++  GA   +       L+  ++       Q    +   +   L +   +   A +
Sbjct: 156 PKVLRAGMGAHFLLSIFNRVELSAWMETYQ---HQIWATALGGRNIGLYEMDLSQSCAWV 212

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G EG G+    +E A +   + M G  ++LNV+ AA V L+      
Sbjct: 213 FGNEGSGVSETVKEKADACVKIPMLGQTESLNVAMAATVCLFEQMRQR 260


>gi|193078079|gb|ABO13014.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 258

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 105/262 (40%), Gaps = 17/262 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66

Query: 84  DANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
              +     H F +  V  + +  + G      G+     P  + T+D   +    ++L+
Sbjct: 67  KKIIELHQGHVFIISEVLYKDLSTL-GNTLPCLGII--DLPKTASTIDYSVD---TLILE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +V DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L
Sbjct: 121 NVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDIL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K           SS     L  +  +     ILG EG+G      E A     +  PG 
Sbjct: 181 PKF---DIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGG 236

Query: 260 IKALNVSNAAAVALYI--TQNH 279
            ++LNV+ A ++  +    Q  
Sbjct: 237 QESLNVAIAGSICFFEMVRQRQ 258


>gi|255546313|ref|XP_002514216.1| rRNA methylase, putative [Ricinus communis]
 gi|223546672|gb|EEF48170.1| rRNA methylase, putative [Ricinus communis]
          Length = 517

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 113/278 (40%), Gaps = 55/278 (19%)

Query: 58  SAALNNPSRKIFQLLATKN-------------ALARLDWDANLPHPFPVKTVPPQTIDKI 104
            AAL+   R+ + L   +                 ++   A       ++ V    ++ I
Sbjct: 237 LAALSAARREFYALYVQEGLDLTNNKKKKDKKGFEKVLKMAQRI-GLSIRRVSKHDLNMI 295

Query: 105 VGKEAVHQGLALETAPL-------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           V     HQGL L+ +PL       L P         L + LD V DP N+GAI+RSA  F
Sbjct: 296 VD-NRPHQGLVLDASPLEMVKIMELDPVSSEDEKGSLWVALDEVTDPQNLGAIIRSAYFF 354

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS- 216
              GI+   + S   S V++K+++G+LE +      N+   L      G++ +G S  S 
Sbjct: 355 GAAGIVLCAKNSAPLSGVVSKASAGSLEIMELRYCRNMMQFLVSSADNGWRVLGGSVASM 414

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--------MPGI--------- 259
             PL + +  +   L+LG+EG GLRP  + + T +  +         M G          
Sbjct: 415 AVPLNEVVPGEPTILVLGSEGTGLRPLVERSCTQLVRIPGNIPMDVTMGGNDVVESEEIN 474

Query: 260 -------------IKALNVSNAAAVALYIT--QNHFAK 282
                        +++LNVS AA V L+     N  AK
Sbjct: 475 LQHSSEGFRSFLAVESLNVSVAAGVLLHHLIGSNQMAK 512


>gi|309389091|gb|ADO76971.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium praevalens DSM
           2228]
          Length = 269

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 114/288 (39%), Gaps = 28/288 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MN+IS  +++KI  L           ++ Y        +SR+  +     L G   + AA
Sbjct: 1   MNIISSSQNDKIKYL-----------NKLY--------RSRNRRKEGVFILEGKRLIEAA 41

Query: 61  LNNPSRKIFQLLAT----KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           L   +    Q+  T    K+A       A       +     + + K        QG+  
Sbjct: 42  LAGGA-DFKQVFLTPAFFKSAANEKLLAALKLEADLIYL--EEKLLKETASTVNPQGILA 98

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                +    D    +  +++LD + DP N+G I+R+AVA   DGII  K      +  +
Sbjct: 99  VVEESVFKGQDFYNKADKILLLDRIQDPGNMGTIIRTAVAAGFDGIIALKGSVDIYNQKV 158

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILG 234
            +S  G +  I   +  +  + L ++       + +    ++++   +     K+ L++G
Sbjct: 159 IRSTMGGIFSIAIRQKLSQQEFLVELKEKALDHELLAADIEAEEYHFEHQYQSKLILMIG 218

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  GL P+    A +   + + G I++LN + AA+V  +       K
Sbjct: 219 NEANGLDPQLLTKAKTKIKIPLAGEIESLNAAVAASVIAFEILAQALK 266


>gi|303232390|ref|ZP_07319082.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481474|gb|EFL44542.1| RNA methyltransferase, TrmH family, group 3 [Atopobium vaginae
           PB189-T1-4]
          Length = 390

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 105/259 (40%), Gaps = 17/259 (6%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLP 88
           K  +  Q  +  +  +  ++ G    + AL + +  + + L  K+  +   R    A + 
Sbjct: 98  KQHTKPQVRKSRAGAQVHYIEGRRACNEAL-SLAMPLKRALIQKDVQSPDIRAFEQACIA 156

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVND 143
              P + V    +D        HQG+ L T P        V       +     L  +  
Sbjct: 157 RDIPCEYVSKAALDA-ASSHGAHQGVMLVTKPFTYTEFADVLRTIDERAAATSALPQLVV 215

Query: 144 -------PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
                    N+GA +RSA       +I     +        K+++GA+  +P ++++N+ 
Sbjct: 216 VLDHVVDEGNLGACVRSAEIVGATAVIIANARAAQVGVGAYKTSAGAVLRVPIVQVANVA 275

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            A+ ++ + GF  +  +  +++ +        + L++G+E +G+    +++      L  
Sbjct: 276 RAVLELKNHGFWAMAATEHAERAVWSSPTAGNVCLVMGSEQQGISALVRKSCDFECKLPQ 335

Query: 257 PGIIKALNVSNAAAVALYI 275
            G+I++LNV+ AA V  Y 
Sbjct: 336 RGVIESLNVAQAATVMCYE 354


>gi|227548138|ref|ZP_03978187.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079800|gb|EEI17763.1| TrmH family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 273

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 101/248 (40%), Gaps = 6/248 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT-VP 97
           ++    +     + G ++V AA+   S     + AT++A               V T   
Sbjct: 24  RAAARKKAGRFIVEGANSVEAAVATGSAT--DVFATESAAGEFAEILTTAGYMDVFTHAI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNIGAILRSAVA 156
             T  + +       G+     P+L      +R   +L+ V    NDP N G ++R A  
Sbjct: 82  TDTAARHLSDTVSTTGIFALCTPVLWSVGKVLRGGPRLVAVCVETNDPGNAGTLIRIADV 141

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++        ES+   ++++G+L H+P  R  N++D + ++ + G      +   
Sbjct: 142 CGADAVVFAGDTVDPESSKAVRASAGSLFHVPVARERNISDVMGQLKAAGLSIAATTMGG 201

Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              L+   E+     A + G E  GL  +  + A     + + G  ++LN++ AAA+ ++
Sbjct: 202 DVSLDDAAEVVAQPTAWLFGNEAHGLPQELIDAADHRVSIPIRGHAESLNLATAAAMCMW 261

Query: 275 ITQNHFAK 282
            +    ++
Sbjct: 262 ESSKVLSR 269


>gi|262047374|ref|ZP_06020331.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|260572348|gb|EEX28911.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
          Length = 255

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 9/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +        + G H    AL    +K   +L T+ AL + D +  +        +  + I
Sbjct: 23  YRDDEGLYLIEGFHLFEEALK-AGKKYQYILGTEEALDQADSEYEVDLSGKNVVLINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + +      Q + +     +    +   N    ++LD++ DP N+G I+R+A A   DG
Sbjct: 82  ARHLSSTKNSQEIFMVLK--IDQPKEFPFNYGKWVLLDNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPL 220
           ++ +   +   +    ++  G+  HI  I+  +L + +               D S K L
Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDLANVITDFQDAAIPVYASLLDRSAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               K  ++ALI+G E  G+       A    ++ + G  ++LN + AA + +Y    HF
Sbjct: 199 PDFEKVPQLALIIGNEAHGISKTIASLADEKLYIPIKGQAESLNAAVAAGIMIY----HF 254

Query: 281 A 281
           A
Sbjct: 255 A 255


>gi|257094430|ref|YP_003168071.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046954|gb|ACV36142.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 272

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 12/266 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
              + R++  YK ++   Q  R   +     L G+H + A   +    I +++ + +   
Sbjct: 2   RRIVSRDNPHYKVLKKLLQSGRERRRTGLAVLDGMHLIDAYSRHCGIPI-EIVVSDSGTG 60

Query: 80  RLDWDANLPHP-FPVK-TVPPQTIDKIVGKEAVHQGLALET---APLLSPTLDAVRNSQL 134
           R +  + L      V  TV    +   +       G+        PL  P  D   +   
Sbjct: 61  RPEIASYLESGQVGVTITVLGDVLFAELAVVETPSGIMAIIDRPRPLQGPAPDMQAD--- 117

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G+ILRSA A     I+ +   + + +    ++A GA   +  +   +
Sbjct: 118 TVVLDGVQDPGNVGSILRSAAAAGFRQILLSPDCAQAWAPKTLRAAMGAHFQLDVLEHCD 177

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L   L        Q +     +   L        +A + G+EG G+RP           +
Sbjct: 178 LPAFLSAYRG---QPVATLLGASTSLYGADLAGPVAWVFGSEGLGVRPAVAALTRLQVRI 234

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            MPG  ++LNV+ AAAV L+ T    
Sbjct: 235 PMPGPSESLNVAAAAAVCLFETVRRR 260


>gi|169632711|ref|YP_001706447.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|169795055|ref|YP_001712848.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|184159160|ref|YP_001847499.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|213158283|ref|YP_002320334.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057]
 gi|215482603|ref|YP_002324795.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301346649|ref|ZP_07227390.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB056]
 gi|301512367|ref|ZP_07237604.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB058]
 gi|301596456|ref|ZP_07241464.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB059]
 gi|332851098|ref|ZP_08433207.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013150]
 gi|332869629|ref|ZP_08438840.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013113]
 gi|332875988|ref|ZP_08443774.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6014059]
 gi|169147982|emb|CAM85845.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|169151503|emb|CAP00266.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183210754|gb|ACC58152.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|213057443|gb|ACJ42345.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AB0057]
 gi|213988442|gb|ACJ58741.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|322509073|gb|ADX04527.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           1656-2]
 gi|323519054|gb|ADX93435.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332730262|gb|EGJ61587.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013150]
 gi|332732676|gb|EGJ63908.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6013113]
 gi|332735854|gb|EGJ66895.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii
           6014059]
          Length = 258

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 17/262 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66

Query: 84  DANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
              +     H F +  V  + +  + G       LA+   P  + T+D   +    ++L+
Sbjct: 67  KKIIELHQGHVFIISEVLYKDLSTL-GNTLP--CLAIIDLPKTASTIDYSVD---TLILE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +V DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L
Sbjct: 121 NVQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDIL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K           SS     L  +  +     ILG EG+G      E A     +  PG 
Sbjct: 181 PKF---DIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGG 236

Query: 260 IKALNVSNAAAVALYI--TQNH 279
            ++LNV+ A ++  +    Q  
Sbjct: 237 QESLNVAIAGSICFFEMVRQRQ 258


>gi|298736242|ref|YP_003728768.1| TrmH family RNA methyltransferase [Helicobacter pylori B8]
 gi|298355432|emb|CBI66304.1| RNA methyltransferase, TrmH family [Helicobacter pylori B8]
          Length = 227

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG H ++  LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VVYGKHVITHLLNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|260103135|ref|ZP_05753372.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|260083045|gb|EEW67165.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
          Length = 255

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 97/238 (40%), Gaps = 13/238 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H    A+ +   K   LL T+ AL + + D ++        +  + I
Sbjct: 23  YRDEEGRYLIEGFHLFDEAIKSGQ-KYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAVAF 157
            + +      Q + +         +D  R         ++LD++ DP N+G I+R+A A 
Sbjct: 82  ARHLSSTKNSQEIFMVLK------IDQPREFPFNYGKWVLLDNLADPGNVGTIIRTADAA 135

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-S 216
             DG++ +   +   +    ++  G+  HI  I+  +L D +               D +
Sbjct: 136 GFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDLADVITDFQDAAIPVYASMLDKT 194

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            K L    K  ++ALI+G E  G+       +    ++ + G  ++LN + AA + +Y
Sbjct: 195 AKQLPDFEKVPQLALIIGNEAHGVSSTIASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252


>gi|239636367|ref|ZP_04677369.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
 gi|239597722|gb|EEQ80217.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
          Length = 246

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 13/227 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            + GVH +  A  +    I QL     +    D        F +       + + +    
Sbjct: 31  LIEGVHLIEEAYQSG-LVIEQLFVVDPSRTDSDLIEYANETFEINL----KVAESLSGTV 85

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
             QG               V  ++ ++++D + DP N+G ++R+A A   D I+  K  +
Sbjct: 86  TPQGFFAVIKKPDYD----VTTAKQVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTA 141

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                 + +++ G++ HIP I   +L   +   +       G + D+    ++    +  
Sbjct: 142 DPYQDKVLRASQGSVFHIPVIS-ESLQSYINTFNG---PVYGTALDNAVSFKEIEAQETF 197

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ALILG EG+G+ P   E  T    + + G  ++LNV+ A ++ LY  
Sbjct: 198 ALILGNEGEGVDPALLEHTTQNITIPIYGQAESLNVAIAGSILLYQL 244


>gi|109947425|ref|YP_664653.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
 gi|109714646|emb|CAJ99654.1| putative rRNA methylase [Helicobacter acinonychis str. Sheeba]
          Length = 227

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+       ++ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGILARVELPIAISLKEIKKAQKLLVLCSITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G +     P ++ +   K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVVPNTLDLINELKTSGFLCLGANMQGSSP-KEYLALKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSIKMRRDFDSLNVSVAAGILM 223


>gi|11499975|ref|NP_071221.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
 gi|3915500|sp|O30272|Y2399_ARCFU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase AF_2399
 gi|2650693|gb|AAB91264.1| rRNA methylase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 224

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 23/233 (9%)

Query: 54  VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVH 111
           V+++  AL     K+ ++  +     ++     +      P+     +            
Sbjct: 6   VNSIKEALLEG--KVVRIYHSGERNPKISEILEIARKKGVPIYRKDGERFS--------- 54

Query: 112 QGLALETAPLLSPTLD-----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                E +P+     +     A+     ++ LD+V D  NIGA +R+A  F   G++  K
Sbjct: 55  ----AEVSPIKYADFEFIVKKALTGGSFILFLDNVVDQRNIGACIRTAEFFGAAGVVLPK 110

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R   S      K+++GA+ HIP  R+ N   A++K+   GF T+    D +  LE     
Sbjct: 111 RRVGSIQEGAVKASAGAVFHIPIARVENFASAIKKLKKLGFTTLAADLDGE-DLEAVSLL 169

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              A+++G E +G+    ++    +  +   G + +LN+S AA + LY     
Sbjct: 170 LPAAVVIGGEDRGVSRPVKKQCDFVVKIPGVGKVNSLNLSVAAGIFLYTLSRQ 222


>gi|315225471|ref|ZP_07867284.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314944569|gb|EFS96605.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 283

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 113/261 (43%), Gaps = 10/261 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIF---QLLATKNALAR 80
            +   KK+   ++KSR   +     + G   +  AL        +    ++ A ++    
Sbjct: 23  QNPLIKKIVLLSEKSRERKKVGICVVEGAREIRLALEGGYTLETLLYQPEIFAEEHLQRL 82

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLD 139
           L + A   +P  +     +   KI  + +    +AL +T      TL    +S LL+V +
Sbjct: 83  LSYTAQKANPIAI---SKEVYQKISYRSSTEGVIALIQTKKHSLDTLAFATDSPLLLVAE 139

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIGA+LR+A A + D +I     +   +  + +S+ G +  +P     + T+ +
Sbjct: 140 APEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIA-TGSTTEVI 198

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             + + G  +   +  + KP  +       A+++G E +GL  +    +T    + M GI
Sbjct: 199 DFLKAKGINSYCAALTASKPYYEVSFKKASAIVVGTEDQGLTEEWLTHSTQNIIIPMEGI 258

Query: 260 IKALNVSNAAAVALYITQNHF 280
           I ++NVS AAAV ++  +   
Sbjct: 259 IDSMNVSVAAAVLIFEAKRQR 279


>gi|227892813|ref|ZP_04010618.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
 gi|227865454|gb|EEJ72875.1| RNA methyltransferase [Lactobacillus ultunensis DSM 16047]
          Length = 255

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 9/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +  +  + G H    A+    +K   LL T+ AL + + D ++        +  + I
Sbjct: 23  YRDEENSYLIEGFHLFDEAIK-AGKKYQYLLGTEEALDKAESDYDVDLSGKNVILINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + +      Q + +     +    +   N    ++LD++ DP N+G I+R+A A   DG
Sbjct: 82  ARHLSSTKNSQEIFMVLK--IDQPKEFPFNYGKWVLLDNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPL 220
           ++ +   +   +    ++  G+  HI  I+  +L D +               D K K L
Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDLADVITDFQDVAIPVYASMLDKKAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   K  ++ALI+G E  G+            ++ + G  ++LN + AA + +Y    HF
Sbjct: 199 QDFAKVPQLALIIGNEAHGVSSTIASLCDEKLYIPIKGKAESLNAAVAAGIMIY----HF 254

Query: 281 A 281
           A
Sbjct: 255 A 255


>gi|294671329|ref|ZP_06736180.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306961|gb|EFE48204.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 262

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 103/285 (36%), Gaps = 33/285 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ +I  L     +  +R                         L G H + A 
Sbjct: 1   MEHIASAQNSRIKHLAKLAASAAKR------------------RAFGQTLLEGTHLLEAF 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT--IDKIVGKEAVHQGLALET 118
           LN   R    +   +N L   +  A L      KTV      + ++ G       +AL  
Sbjct: 43  LNAGGRP-ECVYVAENRLEDAEISALLQRMPSEKTVSVAAPILGRLTGLGEGGNIVAL-- 99

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             +  P+ + +      +VL+ V DP NIG ILRSA A     I+     +   S  + +
Sbjct: 100 --IKLPSAEKLPEDGDCVVLERVQDPGNIGTILRSAAASGVRDIVLGADCADVWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQ--TIGLSSDSKKP-LEQEIKNDKIALILGA 235
           +A GA   +     ++L          G++   +  + D +   L      D    + G 
Sbjct: 158 AAMGAHFLLTLYPDTDLAVW-----RQGYRPPLLATALDERACGLYGLDLRDPCGWLFGN 212

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           EG G+  + +  A     + M G  ++LNV+ AA V L+      
Sbjct: 213 EGAGISAEMRRVADRTVKIPMAGDTESLNVAMAATVCLFEQMRQR 257


>gi|149919873|ref|ZP_01908349.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
           SIR-1]
 gi|149819320|gb|EDM78753.1| RNA methyltransferase, TrmH family, group 3 [Plesiocystis pacifica
           SIR-1]
          Length = 325

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 112/243 (46%), Gaps = 23/243 (9%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G   V   L     ++ +LL  +              L     ++ V  +  D ++G   
Sbjct: 80  GERAVVELLRASPTRVRRLLLEEGRRFESLEALAAEALGERVTIERVEREIFDDLIGPGL 139

Query: 110 VHQGLALETAPLLSPTLDAV----------------RNSQLLMVLDHVNDPHNIGAILRS 153
             +G+   T P      +A+                R  +++++LD V DPHN+GA++R+
Sbjct: 140 A-RGVLAVTRPPRRWDFEALLEGGPEAEGGEAVRTRRGHRIIVLLDGVQDPHNLGAVIRN 198

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG-FQTIGL 212
           A  F    ++  +  +   SAV  +S++GA E +P  +++N+  AL++  + G +  +G 
Sbjct: 199 AEFFGATAVVWGQDRAAPLSAVAVRSSAGATERLPLGQVTNVARALEQAKASGTWWVVGT 258

Query: 213 SSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             D   P+ +  ++    + L+LG+E +G+R  T+E    +  +   G + +LNVS A A
Sbjct: 259 VVDEGTPVHEFAQDPPSDMILVLGSEERGMRRLTRERCDFLVTIARGGSLGSLNVSAAGA 318

Query: 271 VAL 273
           VAL
Sbjct: 319 VAL 321


>gi|54020641|ref|YP_116168.1| hypothetical protein mhp660 [Mycoplasma hyopneumoniae 232]
 gi|53987814|gb|AAV28015.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 233

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 107/238 (44%), Gaps = 16/238 (6%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G ++++ A+ N    ++I+ L  T + +              VK V    +DK+V  
Sbjct: 4   YICGRNSLADAIKNGFIFKEIYLLRPTNDQIFLKQK---------VKIVSRDFLDKLVS- 53

Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
              HQG            +D +     +++++LDH+ D +N+G I+R+A  F    II  
Sbjct: 54  -LNHQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILP 112

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI 224
           K+ +   +    K +SG    + +I ++++  A+ K+    F         K   +++  
Sbjct: 113 KKRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQ 172

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            N   A+ILG EG G++  +   +     + + G + +LNV+ A  + L+  + +  K
Sbjct: 173 FNYPCAIILGNEGTGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230


>gi|254700959|ref|ZP_05162787.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis bv. 5 str. 513]
 gi|261751478|ref|ZP_05995187.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261741231|gb|EEY29157.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
          Length = 297

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 88/258 (34%), Gaps = 10/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      +      
Sbjct: 35  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKTVEQVA 93

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
                    V  V  + I  I  ++   Q +           L  ++   + + + LD V
Sbjct: 94  ARTFAKGGLVLEVTEKVISAITRRD-NPQ-MVAGVFEQQYHQLAGLKPKGNDVYVALDRV 151

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R A A    G+I     +   S    ++  G++  +P  R S   D L  
Sbjct: 152 RDPGNLGTVIRIADAVGAKGVILIGDTTDPYSLETVRATMGSVFSVPLYRASE-ADFLNW 210

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G               N  + LI+G E +GL          +A +   G  
Sbjct: 211 RKGFSGLVVGTHLKGAVDYRTIPYANKPVILIMGNEQQGLPDSLAGACDKLARIPQAGRA 270

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V LY  + 
Sbjct: 271 DSLNLAIATGVMLYEIRR 288


>gi|89337263|ref|NP_663408.2| rRNA methyltransferase 1, mitochondrial precursor [Mus musculus]
 gi|123796682|sp|Q99J25|MRM1_MOUSE RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|74208629|dbj|BAE37571.1| unnamed protein product [Mus musculus]
 gi|74208738|dbj|BAE37607.1| unnamed protein product [Mus musculus]
 gi|112180309|gb|AAH05625.2| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
 gi|151358036|emb|CAI35310.2| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
           musculus]
          Length = 320

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 24/224 (10%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
             +   A L   A      PV     Q +D + G + VHQG+ +E +PL     D   ++
Sbjct: 78  GLQGERAELLRVAE-ARGIPVLRPRRQKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADT 135

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                  QL +VL+ + DP N+GA++RSA     D +IT++R S   + V++K+++GA+E
Sbjct: 136 SSGDDPQQLWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAME 195

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGL--------SSDSKKPLE---QEIKNDKIALILG 234
            +      +L   LQ     G+  +G         S  SK P+    + + +    L+LG
Sbjct: 196 VMDVFATPDLPGFLQAKAQQGWLVVGTVGCPGPEISQSSKVPITSCLEFVWDRPTLLVLG 255

Query: 235 AEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALY 274
           +EG GL  +   +   +  +    H+P  +++LNVS A  + L+
Sbjct: 256 SEGSGLSQEVFASCQLLLTILPRRHLPPGLESLNVSVATGILLH 299


>gi|315442740|ref|YP_004075619.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|315261043|gb|ADT97784.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 271

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 104/254 (40%), Gaps = 6/254 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + S +++    S    +   GV  V   L +       LL T   L  L  D +  
Sbjct: 17  DFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVP-RALLGTDRRLTELGTDLD-G 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      + + + +G       LA  +        + +  ++ + VL+ VND  N+G
Sbjct: 75  LAAPFYRATAEVMAEAIGFHLNRGVLASASRAPELTVAEVLDGARTVAVLEGVNDHENLG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A     D +I     +        + + G    +P+ R +N    L  +    F+
Sbjct: 135 SVFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWPADLNILRDNDFR 194

Query: 209 TIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            + ++ D   P   +    +  ++IA+++GAEG GL+  T  +A     + M     +LN
Sbjct: 195 LLAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMARGTDSLN 254

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y    
Sbjct: 255 VATAAALAFYERDR 268


>gi|317493379|ref|ZP_07951801.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918772|gb|EFV40109.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 371

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 127 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDDE 186

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+               L    ++  ++ L+ V +PHN+G I+R+  
Sbjct: 187 ELTKASGTE-HHGGVCFLIKKRNGLDARSYLKTAADTDCVLALEDVGNPHNLGGIMRTCA 245

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EHI  I       AL +    G+  +  SS 
Sbjct: 246 HFGVKGLMVQDA-SMLESGAAVRTAEGGAEHIQAIDADGFDGALDEFRRAGYTIVTTSSH 304

Query: 216 -SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
               PL +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 305 KGTTPLTKATLPKKMVLVLGQERDGLSETVMQQGDLSLSIGGTGQVESLNVSVATGILLA 364

Query: 274 -YITQN 278
            +  QN
Sbjct: 365 EWWRQN 370


>gi|253996869|ref|YP_003048933.1| tRNA/rRNA methyltransferase SpoU [Methylotenera mobilis JLW8]
 gi|253983548|gb|ACT48406.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera mobilis JLW8]
          Length = 263

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 101/261 (38%), Gaps = 12/261 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           + R++  +K+++ F   +R         L GVH + + ++        ++    +     
Sbjct: 7   ISRDNPVFKQLKKFADNARERRAEGKTLLDGVHLIESYMDTFGEPDLIIIPEGKSSVEAT 66

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                        +P     ++    A   G+         P L      + +++L+ + 
Sbjct: 67  GLIQNLADISTIMLPTLMFAELT-PVANATGILALVK---IPQLPVPEQPEFVLMLEDIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP NIG++LR+A A   D +  +   +   S    +   GA   +P +   +L +ALQ+ 
Sbjct: 123 DPGNIGSMLRTAAASGVDVVYLSTSCTDVWSPKALRGGQGAQFVLPIVERVDLINALQEF 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----G 258
               +     +   +  L  +  +   A ++G EG GLR +T    +    + M     G
Sbjct: 183 DGNSY---ATAMQGE-SLYAQDLSAPTAFVIGNEGAGLRKQTMAATSKRITIPMANTALG 238

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN   AAAV L+     
Sbjct: 239 SVESLNAGAAAAVCLFERMRQ 259


>gi|301633558|gb|ADK87112.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma pneumoniae
           FH]
          Length = 239

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 15/239 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            E  FL+G      AL+N   +I ++  +      L            +    Q   +  
Sbjct: 2   QETSFLFGSKAFLEALDN-QLQIKKVNLSDKHQKLLGLIK--KRGLRYEMHSSQWFHQQF 58

Query: 106 GKEAVHQGLALETAP-LLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            +   HQ       P  +  T++ +      +++  L++LD + D HN GAILR+ +A  
Sbjct: 59  -RHINHQEFVCVINPNQMLKTIEQLIQITDSKSTSTLVMLDEIQDLHNFGAILRTCMAAE 117

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK- 217
            DGII  K      ++ + +++ G + +   ++++NL+ A+  +   GF T+  + D + 
Sbjct: 118 VDGIIFKKHNQAPINSTVIRTSMGTVFYQNLVQVTNLSYAITTLQKHGFWTVATTLDERL 177

Query: 218 --KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             K   Q   + +I L+ G E KGL     + A     + M   + +LNVS A  + L+
Sbjct: 178 KPKDYRQVDFDKRILLV-GNEDKGLNALLLKNADLKVKIPMNPKLNSLNVSVAVGIILF 235


>gi|260551451|ref|ZP_05825635.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624]
 gi|260405445|gb|EEW98938.1| tRNA/rRNA methyltransferase [Acinetobacter sp. RUH2624]
          Length = 258

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 17/262 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDL 66

Query: 84  DANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
              +     H F +  V  + +  + G       LA+   P  + T+D   +    ++L+
Sbjct: 67  KKIIELHQGHVFIISEVLYKDLSTL-GNTLP--CLAIIDLPKTASTIDYNVD---TLILE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +V DP N+G +LRSA A +   II T+  +   +  + ++  GA   +       LTD L
Sbjct: 121 NVQDPGNVGTLLRSAAAANIKQIICTQGSASLWTPRVLRAGMGAHFSLSCFENFQLTDIL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K           SS     L  +  +     ILG EG+G      E A     +  PG 
Sbjct: 181 PKF---DIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGG 236

Query: 260 IKALNVSNAAAVALYI--TQNH 279
            ++LNV+ A ++  +    Q  
Sbjct: 237 QESLNVAIAGSICFFEMVRQRQ 258


>gi|332886049|gb|EGK06293.1| hypothetical protein HMPREF9456_00167 [Dysgonomonas mossii DSM
           22836]
          Length = 263

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 17/275 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL+++    + +             K++   +     + G   ++ AL      + 
Sbjct: 2   EKIVSLQNTRIKNIVK-----------LSKAKERREQNLFIIEGARELNLALMAGYE-VD 49

Query: 70  QLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            +        + D+   L          V     +KI  +E    GL     P      D
Sbjct: 50  SVFVCPELFVKTDYPHVLESISDNKKFEVSEAVFEKIAYREGSD-GLLTLAKPKGHTLTD 108

Query: 128 -AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             + ++  L++L+ V  P N+GA+LR+A A   D +I     +   +    +S+ G +  
Sbjct: 109 LKLSDTPFLIILESVEKPGNLGAVLRTADAAQADAVIVCDPATDIYNPNAIRSSVGCVFT 168

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +     ++  +AL  + S   +      ++ +  +        A+++G E  GL     +
Sbjct: 169 VQTAVCTS-QEALSYLRSRNIKAYAAELNASQWYQDTDFTKPSAIVMGTEADGLTLFWLD 227

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            A     + M G I +LNVS + A+  +       
Sbjct: 228 NADYRVKIPMRGKIDSLNVSVSTAILTFEAMRQRG 262


>gi|126698277|ref|YP_001087174.1| putative RNA methylase [Clostridium difficile 630]
 gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile]
          Length = 226

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 94/214 (43%), Gaps = 4/214 (1%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           I +    K    +L  D +  +   +     +   ++V  E   QG+    +       +
Sbjct: 15  INEEFENKKEHVKLLEDLDKKNT-KIYKTTNKNFKELVDTENT-QGIIGVVSFKKKKLSE 72

Query: 128 AV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           ++ +  + +++LD + DP N+G I+R+A +   D II  K      +  + +S  G++  
Sbjct: 73  SINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFD 132

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +  I  S   + +  + S  F  +    +++   ++     K+AL++G E  G+  +   
Sbjct: 133 MNIIDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGNEANGINEELVS 191

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  +  + + G  ++LN + ++A+ +Y  + + 
Sbjct: 192 KSDILVKIPIYGKAESLNAAISSAILMYEIKKYL 225


>gi|302533437|ref|ZP_07285779.1| rRNA methylase [Streptomyces sp. C]
 gi|302442332|gb|EFL14148.1| rRNA methylase [Streptomyces sp. C]
          Length = 271

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 110/259 (42%), Gaps = 13/259 (5%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
            + +++D    +L    RDY  +     + R           G   +  A +        
Sbjct: 3   DLITIEDPDDPRL----RDYTGLTDVELRRRREPAEGLFIAEGEKVIRRAKDAGYEMRSM 58

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDA 128
           LL+ K      D    LP   PV  V P   +++ G   VH+G     +  PL +   + 
Sbjct: 59  LLSAKWVDVMRDVIDELP--APVYAVSPDLAERVTGYH-VHRGALASMQRKPLPTAQ-EL 114

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + +++ + V++ VND  NIGAI RSA A   D ++ +   +        K + GA+  +P
Sbjct: 115 LASARRVAVMEAVNDHTNIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVP 174

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQ 245
           Y R+     +L  +   GF+ + L+   K  P++       D++AL+LGAEG GL  +  
Sbjct: 175 YARLEAWPKSLDTVREAGFKLLALTPHEKASPIDVAAPQTLDRVALMLGAEGDGLSTQAL 234

Query: 246 ETATSMAHLHMPGIIKALN 264
             A     + M   + +LN
Sbjct: 235 VAADEWVRIPMAHGVDSLN 253


>gi|310778758|ref|YP_003967091.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
 gi|309748081|gb|ADO82743.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
          Length = 251

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 112/255 (43%), Gaps = 14/255 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + ++ YK ++    K+R   + E LF+   H          ++I + +  ++   R   
Sbjct: 6   SKENKLYKTIKKL--KTRKYREKEKLFIAEGHKFLDF-----KEIPKAIILRDGDDRYQ- 57

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D       P         ++I  +E   QG+ L   P+   ++ ++ ++  +++LD + D
Sbjct: 58  DKVEEFVCPKYIFSESLFNEISSQE-NSQGIIL-IYPMKESSIASIGDN--IVILDRIQD 113

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R + A     I+  K      +    +S+ G+L ++ +I +    + ++ M 
Sbjct: 114 PGNLGTIIRVSDAAGYKDIVLLKGSVDVYNEKTVRSSMGSLFNMNFIYMEE-DELIKFMA 172

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              +++   +  +        I   K A+I G EG+G+  +  E + S   + + G  ++
Sbjct: 173 EKNYKSTATALREDAVSYTDIIPGSKNAIIFGNEGQGVSERLIEVSDSKVIIPIYGSAES 232

Query: 263 LNVSNAAAVALYITQ 277
           LNV+ A  + LY  +
Sbjct: 233 LNVAVATGIVLYKFR 247


>gi|73966850|ref|XP_852880.1| PREDICTED: similar to Y45F3A.9 [Canis familiaris]
          Length = 346

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 22/222 (9%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
             +   A L  +A      PV     Q +D +  +  VHQG+ +E +PL       V  +
Sbjct: 82  GLQGERAELLREAE-ARDIPVLRPRRQKLDALC-RHQVHQGVCMEVSPLKPRPWTEVEEA 139

Query: 133 Q-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +       L +VL+ + DP N+GA+LRSA     D +IT+ R S   + V++K+++GA+E
Sbjct: 140 RPGDDPRRLWLVLERLQDPRNLGAVLRSAHFLGVDKVITSGRNSCPLTPVVSKASAGAME 199

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGL------SSDSKKPLE---QEIKNDKIALILGAE 236
            +      +L   LQ     G+   G          S+ P+    + + +    L+LG E
Sbjct: 200 VMDVFSTDDLAGFLQAKARQGWLVAGTVGCPRPEMSSEIPITSCLEFLWDQPTLLVLGNE 259

Query: 237 GKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVALY 274
           G GL    Q +   +  +     +P  +++LNVS AA + L+
Sbjct: 260 GSGLSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLH 301


>gi|325678815|ref|ZP_08158413.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
 gi|324109319|gb|EGC03537.1| RNA methyltransferase, TrmH family [Ruminococcus albus 8]
          Length = 266

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 7/226 (3%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            +  AL+     +  L   K    +           PV T   + + KI G +     L 
Sbjct: 39  VIRTALDAGFEAVSMLAEKKYVSGQAADIIARLGDVPVYTADREQLTKITGFKLTQGVLC 98

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 +    +   N++ + VL+ + +  NIGA+ RSA A   DGI+ T   S      
Sbjct: 99  AMKRRAMQAFPE---NARRIAVLEDIMNQTNIGAVFRSAAAMGIDGILLTDGCSDPLFRR 155

Query: 176 LAKSASGALEHIPYIRI-SNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIAL 231
             + + G +  I +    ++ +  ++K+ + G+ T  ++  D    +  E     +K+A+
Sbjct: 156 TIRVSMGTVFQIAWRYAGTSDSGYIEKLKADGWLTAAMALRDDTVSIADERLKNAEKLAI 215

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +LG EG GLR  T         + M   + +LNV+ A AVA + T+
Sbjct: 216 VLGTEGDGLREDTISACDLTVKIPMAHGVDSLNVAAAGAVAFWETR 261


>gi|291280542|ref|YP_003497377.1| RNA methyltransferase TrmH family [Deferribacter desulfuricans
           SSM1]
 gi|290755244|dbj|BAI81621.1| RNA methyltransferase, TrmH family [Deferribacter desulfuricans
           SSM1]
          Length = 223

 Score =  185 bits (470), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 108/237 (45%), Gaps = 18/237 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG + V  AL +  +K+ ++   +  +  +          P + V     DK   K 
Sbjct: 1   MIIYGKNPVKEALKS--KKVRKVFFREQKIFDVG-------NTPFEIVSKSEFDKKFSKH 51

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           A  Q +A E         +   +  L   + VLD + DP N GAI+R+   F  +  I  
Sbjct: 52  A--QSVAAEVDFRYYDFDEVYEDIVLEENVAVLDKIQDPQNFGAIVRAGHCFGINYFIIP 109

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  S S +  + K+++G++ +   ++++N+   L K+   GF       + KK L +   
Sbjct: 110 KHGSSSVTPAVFKASAGSIIYSKIVKVTNIAKTLDKLLDAGFFITAADINGKKELSEIKT 169

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +  +ILG+EG+G+R    + A     + M G I +LNVS +AA+  Y    HF K
Sbjct: 170 TKRNCIILGSEGEGIRSNVLKRAHITFKIEMTGKIDSLNVSQSAAITFY----HFFK 222


>gi|332702320|ref|ZP_08422408.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552469|gb|EGJ49513.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 262

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 15/250 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPP 98
           H S      + G   V   L+    ++  ++  K A         D         + V  
Sbjct: 5   HQSSESLRLVAGRKPVLELLSTAPERVEGVMLQKGAKGGPVEQILDLCRQRGVRFRFVER 64

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILR 152
             +D+       HQG+  +        L  +  +       LL+ LD V DP N+GA++R
Sbjct: 65  HELDR--QFPGNHQGVLADIFEAGYTELHELLQTARQSPLPLLVALDQVLDPGNVGALVR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  A    G++  K ++        K+++GAL  +P  R++NL  AL++    G+   G 
Sbjct: 123 TVYALGGAGLLVPKHHAARLGTGALKASAGALLRLPIARVTNLARALEECAEAGYTIYGT 182

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +  + L          ++LG E KG+RP   +       + +     +LNV+ A A+ 
Sbjct: 183 QGEVGENLFFLEPRLPAVVVLGGEEKGMRPGVAKRCDFTLRIPLQHGFDSLNVAQAGALI 242

Query: 273 LYITQNHFAK 282
                 HFA+
Sbjct: 243 ----TGHFAR 248


>gi|119775658|ref|YP_928398.1| putative methyltransferase [Shewanella amazonensis SB2B]
 gi|119768158|gb|ABM00729.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B]
          Length = 333

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 68/272 (25%), Positives = 115/272 (42%), Gaps = 17/272 (6%)

Query: 19  HYAKLRRN--HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           H    RR   HR       F+ K +  ++     LYG++         S ++ +L   + 
Sbjct: 66  HREAPRREPAHRATGAQAGFDGKDQRLNETR---LYGINACRETFKLRSDEVIKLYLDEE 122

Query: 77  ALAR-LDWDANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------DA 128
              +  D    L         V    ++KI G +  H G+ +         +      + 
Sbjct: 123 TAPKFADVMKYLARNRKAYHVVDADELEKIAGSQ-HHGGVVMVVRRKPVQDIAGYLAANT 181

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            ++   L+ LD V +PHN+GAI+RS   F   GI+ T+     +S   A++A G +EH+ 
Sbjct: 182 AKSRDCLLALDGVGNPHNLGAIMRSCAHFGVAGIVMTEAG-LLQSGAAARTAEGGMEHVE 240

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            IR   LTDALQ     G+  I  SS   + L +     ++ ++ G E  G+       A
Sbjct: 241 GIRCDRLTDALQLCRDAGYSIITTSSHGGESLYRSKLPARVVVVFGEEMDGVSKAVASRA 300

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
                +   G++++LNVS AA++ L  +  Q 
Sbjct: 301 DIGVQIPGTGLVESLNVSVAASLILGEWYRQQ 332


>gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512]
          Length = 286

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 100/281 (35%), Gaps = 20/281 (7%)

Query: 16  KDSHYAKLRR----------NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           KD H    RR           +   K +++   K +   +       G+  V  A+    
Sbjct: 3   KDFHNQGPRRVGQVKEVTSLANPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGW 61

Query: 66  RKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPL 121
             I  L+  K A  +   +            V  V  + I  I  ++   Q +       
Sbjct: 62  -TIRTLVYAKAAKGKPLVEQMAAKTVASGGLVLEVSEKVIGSITRRD-NPQMVVGIFDQR 119

Query: 122 LSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             P  D   R  +  + LD V DP N+G I+R+A A    G+I     +   S    ++ 
Sbjct: 120 WKPLKDIRPREGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRAT 179

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKG 239
            G++  +P  R +   + L    S G   +                   + L++G E  G
Sbjct: 180 MGSVFAVPVARAT-PEEFLAWRKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSG 238

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L  +  + A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 239 LPEQLAKEADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|317124938|ref|YP_004099050.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
 gi|315589026|gb|ADU48323.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
           DSM 43043]
          Length = 251

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 111/235 (47%), Gaps = 6/235 (2%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGK 107
           +YG + V   L +P   + +++   +A      +           V++ P + + K+ G 
Sbjct: 14  VYGRNPVHEVLLDPDLHVDKVVIADSARGSGLTEIRRAAGRRGITVQSAPAERVKKLAGN 73

Query: 108 EAVHQGLALET-APLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               QG+  +  AP + P   A+ ++ L  ++VLD +  P N+G ILRSA A   DGI+ 
Sbjct: 74  GRQDQGVFADVVAPRMLPLEVAIDHADLRTVLVLDGITTPANVGMILRSATAAGIDGIVV 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            +R   S   ++ K+++G     P ++     +A+  +   GF  +GL +D    L    
Sbjct: 134 PRRGVASIDPLVVKASAGIAFRAPILKTFTAVEAVTALKEAGFHIVGLDADGDDDLFTAH 193

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +++A++LG+E  G  P+      +   + M G +++LNVS AAAV  +     
Sbjct: 194 LRERVAVVLGSETAGHGPEVARLVDTWVSIPMTGGVESLNVSAAAAVVCFELVRR 248


>gi|119476215|ref|ZP_01616566.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2143]
 gi|119450079|gb|EAW31314.1| tRNA/rRNA methyltransferase (SpoU) [marine gamma proteobacterium
           HTCC2143]
          Length = 255

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 109/250 (43%), Gaps = 15/250 (6%)

Query: 40  SRHTSQPENLF-----LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWD---ANLPHP 90
           S++  Q +  F     +YG   V  AL + +  +++L LA  N    +  +         
Sbjct: 4   SKNYQQKKRFFNDLLTIYGRKPVLEALEDSTMSLYKLHLADSNKSGGIIAEIIKLAEKRG 63

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDP 144
             ++    +++ +I       QG+A +       +LD          S  L+ LD++ +P
Sbjct: 64  VEIQWHDRKSLSRISRNSKQDQGVAADIKVDKHQSLDHYLQQKTNERSLRLIALDNITNP 123

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+RS  A + DG+I  ++   + S ++ K++ G +   P +    L   L  +  
Sbjct: 124 QNVGMIIRSVCAGNIDGLIIPRKGCAALSPLVIKASVGTVFKAPLLHCETLAQGLGALRD 183

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                  LSS +K+ L +      +  ILG E +G+  + Q+ +     + M   +++LN
Sbjct: 184 RDVTICTLSSHAKQSLFEYQAQQSVVYILGNETEGVSEEVQKLSDQQLSIPMNNGVESLN 243

Query: 265 VSNAAAVALY 274
           V+  AA+  +
Sbjct: 244 VAVTAALIAF 253


>gi|241662958|ref|YP_002981318.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12D]
 gi|240864985|gb|ACS62646.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12D]
          Length = 260

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 106/260 (40%), Gaps = 11/260 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++H  +     L GVH V A L+       Q L ++  +   + 
Sbjct: 6   SRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMP-AQCLVSERHIRHPEV 64

Query: 84  DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDH 140
            A L    P  V  +      ++     V  G+  +         L    ++   ++LD 
Sbjct: 65  AAVLDRVDPDTVILLADNLFGQLT---TVVNGVDLMALVETPEGKLPQTIDADC-VILDG 120

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          
Sbjct: 121 IQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESVHS 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++       +  SS +K+ +     N  +  + G EG G+  +     T+   +  PG +
Sbjct: 181 RLQ---VPLLATSSHAKQAVFDVPLNAPVGWVFGNEGAGVSEEWLSAVTTPVTIPQPGGM 237

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AAAV L+      
Sbjct: 238 ESLNVAAAAAVCLFEAVRQR 257


>gi|238793926|ref|ZP_04637545.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           intermedia ATCC 29909]
 gi|238726693|gb|EEQ18228.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           intermedia ATCC 29909]
          Length = 364

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEEE 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 236

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 237 AHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 295

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 296 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 355

Query: 274 -YITQN 278
            +  QN
Sbjct: 356 EWWRQN 361


>gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
 gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
          Length = 271

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 17/269 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K M+S   + +H ++     + GV   S  +      I   L T   + +    A
Sbjct: 7   SNKKIKLMESLRLR-KHRAKEGLFRIEGVRL-SEMVAASGWAIRFGLYTAELVEKERGRA 64

Query: 86  ---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA------PLLSPTLD-AVRNSQLL 135
               L    P+  +      K+   +   QG+ L         P ++  L  A     LL
Sbjct: 65  LVEALQAKCPLYEIGAALAKKVAATD-TPQGIFLVAEQQKKSLPQMAEHLQQAAARKPLL 123

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V DP N G I+R+A A   DG+I TK      S    ++  G+L H+P +   + 
Sbjct: 124 VVLDGVQDPGNAGTIIRTADAVGADGVILTKGSVDVFSDKTVRATMGSLFHLPVVTDVSA 183

Query: 196 TDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            +      + G Q +  + D   KP           +  G EG G+  +    A    ++
Sbjct: 184 EEVATFAQAAGCQLLATALDEQAKPHFAVDFGKGSLIAFGNEGGGVSEELLAAA-EKVYI 242

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M G  ++LNV  ++AV LY    Q HFA
Sbjct: 243 PMYGEAESLNVGVSSAVVLYEAVRQRHFA 271


>gi|326803177|ref|YP_004320995.1| RNA methyltransferase, TrmH family [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651120|gb|AEA01303.1| RNA methyltransferase, TrmH family [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 259

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 106/254 (41%), Gaps = 16/254 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +N+   K  +    + R   +     + G H + AAL   +  + ++  T       + 
Sbjct: 4   SKNNPKIKSAKKLLSR-RGREKAGQYLIEGPHLLEAALEAGA-DLAEVFLTPE----HEA 57

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D  L +      + P+   ++   +   QG+          +L     S  +++LD V D
Sbjct: 58  DFKLANQ---TLISPEIASELSDTQR-DQGVFAVVNRDQKASLK--PASPAVLLLDGVQD 111

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++RSA AF+   I   K      S  + +S  G+  H+   ++  L +A+  + 
Sbjct: 112 PGNLGTLIRSADAFNYQDIYLGKGTVDPYSPKVVRSMQGSQFHVRLHQVV-LEEAMASLR 170

Query: 204 SWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             G+       + +          K  K  +ILG EG G+RP+    +    ++ M G  
Sbjct: 171 KAGYCLAATELNDQAQALETYNLKKRQKWGIILGNEGNGVRPEIIAASDISLYITMLGQA 230

Query: 261 KALNVSNAAAVALY 274
           ++LNV+ A ++A++
Sbjct: 231 ESLNVAIAGSIAMH 244


>gi|222084674|ref|YP_002543203.1| rRNA methylase protein [Agrobacterium radiobacter K84]
 gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84]
          Length = 286

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 10/260 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  AL      I  L+  K A  +   +  
Sbjct: 24  NPIIKDIKALTNK-KSREESGAFLAEGLKLVIDALELGW-TIRTLVYAKAAKGKPLVEQV 81

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHV 141
                     V  V  + I  I  ++   Q +         P  D    + +  + LD V
Sbjct: 82  AAKTVAAGGLVLEVSEKVIASITRRD-NPQMVVGIFDQRWRPLRDVRPKAGETWVALDRV 140

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    G+I     +   S    ++  G++  +P ++ +   + L  
Sbjct: 141 RDPGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATMGSVFAVPVVKAT-PEEFLAW 199

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             + G   +                   + L++G E  GL     + A ++A +   G  
Sbjct: 200 KKTAGVSVVATHLAGAVDYRTIDYKKKPVVLLMGNEQSGLPDALAKEADALARIPQAGRA 259

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN++ A AV L+  + H 
Sbjct: 260 DSLNLAVATAVMLFEARRHL 279


>gi|268611052|ref|ZP_06144779.1| hypothetical protein RflaF_16350 [Ruminococcus flavefaciens FD-1]
          Length = 269

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 4/228 (1%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            +  AL +    I  L   K    +           PV T   Q +  + G +     L 
Sbjct: 41  VIRTALGSGYEPISLLTERKYIDGQAKDIIEKCGDIPVYTASSQQLTALTGYKLTQGVLC 100

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 L      +  S  + VL+ V +  NIGA+ RSA A   D ++ T   S      
Sbjct: 101 AMKRKRLPKAEYILAKSVRVAVLEDVMNQTNIGAVFRSAAALGFDAVLLTPSSSDPLFRR 160

Query: 176 LAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKN-DKIAL 231
             + + G +  +P+  + N   D + ++ + GF T  ++   D+ K  +  + + D++A+
Sbjct: 161 SVRVSMGTVFQLPWTYLENGSPDYIGELRNAGFVTAAMALRRDTIKINDPRLASVDRLAV 220

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +LG EG+GL+ +T ++      + M   + +LNV+ A+AVA +    H
Sbjct: 221 LLGTEGEGLKDETIDSCDYTIKIPMSHGVDSLNVAAASAVAFWQLGKH 268


>gi|206602427|gb|EDZ38908.1| Putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum sp.
           Group II '5-way CG']
          Length = 192

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 7/186 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLL----MVLDHVNDPHNIGA 149
            VP  ++D++   + VHQG+ A      L    + +   +LL    + +D V DP N+GA
Sbjct: 3   FVPRASLDRMA-PDLVHQGVYAALLPLPLLDLGEFLEGKELLPSPLVAVDGVQDPRNLGA 61

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +LR+  A    G++  KR     S V AK++SGAL  IP IR+ NL+ +L  +   G+  
Sbjct: 62  LLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTIPLIRVGNLSQSLIYLRKQGYGV 121

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             L+               + +++G E KG+     + +     L M G + +LN+S A 
Sbjct: 122 ASLALGGSTAYRD-PFPAPLVIVVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVAL 180

Query: 270 AVALYI 275
            + LY 
Sbjct: 181 GIFLYA 186


>gi|294776509|ref|ZP_06741983.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294449638|gb|EFG18164.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 268

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 20  LTEAQLRQRMEPGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+   + L   +  ++ +GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLNGTIGDLNKFGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D    ++  I     ++A+++G EG GL  KT   A  +  + M   + +LN
Sbjct: 197 ALTDDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLN 251


>gi|238504252|ref|XP_002383357.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
 gi|220690828|gb|EED47177.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
          Length = 495

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 130/351 (37%), Gaps = 84/351 (23%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH------TSQPENLFLYGVHTVSA 59
           ++ S +    + S  A+  ++HR  +++    +++         + P + F+YG   V A
Sbjct: 127 REDSNRPQDKRHSRRAEPTKHHRATERVPERVKENVQVPDAIPYTTPASEFIYGTSAVEA 186

Query: 60  ALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVP---PQTIDKIVGKEAV 110
           AL    R++++L   + +   L           L     VK       + +DK+      
Sbjct: 187 ALRCSRRRMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAFGGWDRLLDKMSA-GRP 245

Query: 111 HQGLALETAPLLSPTL----------------------------------------DAVR 130
           H G  LE +PL    +                                        D   
Sbjct: 246 HNGCVLEASPLPRLPVRGLKSVPSIKEEDFGVELGAQSREEALVNSTNDKLKIHHWDQRT 305

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              ++++LD + DP N+GAI+RSA     D II   R S   S V  K+++GA E++  +
Sbjct: 306 RYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTLL 365

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----------------DKIALILG 234
            +SN  D +Q+  + G++     +        +  +                    +++G
Sbjct: 366 EVSNEVDFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMG 425

Query: 235 AEGKGLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273
           +EG GL    +  A S+  +              P  + +LNVS AAA+ +
Sbjct: 426 SEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALLM 476


>gi|319403499|emb|CBI77078.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 280

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 9/247 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP----V 93
            K ++ ++       G+  V  AL N    I  L+ +KN+L+    +    +       V
Sbjct: 27  DKKKNRNRENIFMAEGLKLVIDAL-NLGWTIHTLIVSKNSLSNSTIENTAANTIANGGFV 85

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNIGAILR 152
                + ++ I  ++   Q +              +R    + + LD V DP N+G I+R
Sbjct: 86  IKASQKVLESITHRD-NPQTVIGIFKQQWHSIEKIIRQIGDVYIALDRVRDPGNLGTIIR 144

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  A    GII     +   S    ++  G++  +P  R +  T      H  G   +G 
Sbjct: 145 TVDAAGAKGIILIGETTDPFSPETVRATMGSIFSVPLYRCNESTFLNWSTHFKGI-IVGT 203

Query: 213 SSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                        KN  I L++G E +GL          +A +   G   +LN++ A A+
Sbjct: 204 HLKGSVDYRTIDFKNGPIILLMGNEQQGLSDVLVNHCHKLARIPQCGHADSLNLAVATAI 263

Query: 272 ALYITQN 278
            LY  + 
Sbjct: 264 MLYEIRR 270


>gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
           105476]
 gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           tribocorum CIP 105476]
          Length = 284

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 8/258 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ +QK ++ ++       G+  V  AL N    I  L+ +K+ +     + 
Sbjct: 16  SNPIIKDLKALSQK-KNRNREGLFMAEGLKLVIDAL-NLGWTIQTLIFSKSEIGNATIEN 73

Query: 86  NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      V     + ++ +  ++     + +      S  +   +   + + LD V
Sbjct: 74  TAARAVANGGFVIKASQKVMESLTRRDNPQTVIGIFKQKWQSLEMITGQAKDVYIALDRV 133

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A S  G+I     +   S    ++  G++  IP  R       L  
Sbjct: 134 RDPGNLGTIIRTADAVSAKGVILIGETTDPFSPETVRATMGSIFSIPLYRFDESA-FLNW 192

Query: 202 MHSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +    +G          + ++KN  I L++G E +GL          +A +   G  
Sbjct: 193 SSCFKGMIVGTHLKGSLDYRKLDLKNGPIILLMGNEKQGLSDILTNRCDKLARIPQSGRA 252

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A AV LY  + 
Sbjct: 253 DSLNLAIATAVMLYEIRR 270


>gi|305681831|ref|ZP_07404635.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658304|gb|EFM47807.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 266

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 105/242 (43%), Gaps = 6/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++    +     + G ++V AA+   S     +  T  A  R            V   P 
Sbjct: 25  RTAVRRKEGRFIVEGSNSVEAAVATGSAT--DVFITAEAAKRFADIVVAAGHMQVFVHPI 82

Query: 99  QT-IDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVA 156
            T   + +   A   G+     P+L    +A+ R+ +L+ V    NDP N G ++R + A
Sbjct: 83  TTGAARSLADTATAPGIFAVCRPVLWRVGEALGRSPRLVTVAVGTNDPGNAGTLVRVSDA 142

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I        +S+   ++++G++ H+P  R  ++ + L+ +   G Q +  ++D 
Sbjct: 143 LGADAVIFAGDTVDPQSSKAVRASAGSVFHVPVARSRDVGEVLRLLKGRGLQLMATAADG 202

Query: 217 KKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L    E+     A + G E  GL P+  E A     + + G  ++LN++ AA++ L+
Sbjct: 203 EVDLGTANELLARPTAWLFGNEAHGLGPELMELADHRVAIPIKGSAESLNLATAASICLW 262

Query: 275 IT 276
            +
Sbjct: 263 ES 264


>gi|150006258|ref|YP_001301002.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
 gi|149934682|gb|ABR41380.1| putative rRNA methylase [Bacteroides vulgatus ATCC 8482]
          Length = 268

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 20  LTEAQLRQRMEPGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGDRELLTTLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+   + L   +  ++ +GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLNGTIGDLNKFGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D    ++  I     ++A+++G EG GL  KT   A  +  + M   + +LN
Sbjct: 197 ALTDDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLN 251


>gi|239939998|ref|ZP_04691935.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291443427|ref|ZP_06582817.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291346374|gb|EFE73278.1| rRNA methylase [Streptomyces roseosporus NRRL 15998]
          Length = 256

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 7/240 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A          LL+ K      D    +P
Sbjct: 1   DYIGLTDVELRRRREPAEGLFIAEGEKVIRRARQTGYEMRSMLLSAKWVDVMRDVIDEVP 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147
              PV  V P+  +++ G   VH+G          P  D +   ++ ++V++ VND  NI
Sbjct: 61  --APVYAVAPELAERVTGYH-VHRGALASMQRKPLPAADELLATARRVVVMESVNDHTNI 117

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF
Sbjct: 118 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKGLEAVREAGF 177

Query: 208 QTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + + L+ D+K     E      +++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 178 RLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTRALMAADEWVRIPMAHGVDSLN 237


>gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 286

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 100/281 (35%), Gaps = 20/281 (7%)

Query: 16  KDSHYAKLRR----------NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           KD H    RR           +   K +++   K +   +       G+  V  A+    
Sbjct: 3   KDFHDQGPRRVGQVKEVTSLANPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGW 61

Query: 66  RKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPL 121
             I  L+  K A  +   +            V  V  + I  I  ++   Q +       
Sbjct: 62  -TIRTLVYAKAAKGKPLVEQMAARTVASGGLVLEVSEKVIASITRRD-NPQMVVGIFEQR 119

Query: 122 LSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             P  D   R+ +  + LD V DP N+G I+R+A A    GII     +   S    ++ 
Sbjct: 120 WMPLRDIRPRDGETWVALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRAT 179

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKG 239
            G++  +P  R +   + +    S G   +                   + L++G E  G
Sbjct: 180 MGSVFAVPVARAA-PEEFIAWRKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSG 238

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L  +    A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 239 LPDQLAGQADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|325266642|ref|ZP_08133319.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982085|gb|EGC17720.1| tRNA/rRNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 294

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 105/265 (39%), Gaps = 15/265 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A     +   K +      ++H  +     L G H ++A L+  +  + Q+   ++ L  
Sbjct: 35  AIQSPQNPQLKHLAKLLGHAKHRREHSQAVLEGAHLLTAYLDAGNTPL-QVYLPEHRLHE 93

Query: 81  LDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
            +  A    LP    V+ V  + + KI     +HQ   L T   L P +     S   ++
Sbjct: 94  PEIAALLCRLPADI-VQPVSGKALGKIT---QLHQAEDLMTLIALPPPV--APESPDYVL 147

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V D  N+G +LRSA A     I+  +  + + S  + ++  GA   +       LT+
Sbjct: 148 LDRVQDAGNVGTVLRSAAAAGIRQIVLGEGCADAYSPKVLRAGMGAHFLLHIQERVCLTE 207

Query: 198 ALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              +   +       + D  +P  L Q       A I G EG G+ P+    A     + 
Sbjct: 208 WCAR---YPHAVYATALDGNRPALLYQLDLRAPCAWIFGNEGSGVSPELIALAGRSVKIP 264

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G  ++LN++ AA V L+      
Sbjct: 265 MQGATESLNIAQAATVCLFEQMRQR 289


>gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 293

 Score =  184 bits (469), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 89/256 (34%), Gaps = 6/256 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++S   K +   Q       G+  V  AL    R    + A      ++     
Sbjct: 29  NPIVKDLRSLALK-KFRDQQGVFLAEGLKLVIDALEQDWRIKTLVFAKSGKGNKMVEQVA 87

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + +  I  ++     + +             + + + + LD V D
Sbjct: 88  ARTFAKGGLVLEVTEKIMAAITRRDNPQMVVGVFEQQYRPLASLKPKGNDVYIALDRVRD 147

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A S  G+I     +   S    ++  G++  +P  ++S   D L    
Sbjct: 148 PGNLGTVIRTADAVSAKGVILIGDTTDPYSLETVRATMGSVFSMPLYKVSE-ADFLNWRK 206

Query: 204 SWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 +G               N  + L++G E +GL          +A +   G   +
Sbjct: 207 GVSGLVVGTHLKGAVDYRTIPYANKPVVLMMGNEQQGLPDSLAGACDKLARIPQAGRADS 266

Query: 263 LNVSNAAAVALYITQN 278
           LN++ A  V LY  + 
Sbjct: 267 LNLAIATGVMLYEIRR 282


>gi|168043421|ref|XP_001774183.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674451|gb|EDQ60959.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 280

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 117/267 (43%), Gaps = 29/267 (10%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------ 82
           D+ K ++ N +       E   +YGV  + AA     R    L    N +  +       
Sbjct: 5   DWPKREAVNWRV------EGEAVYGVAPIRAAFLAERRIFHTLYVQTNLVDNIATGKRKD 58

Query: 83  -----WDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--- 132
                W  N  H     V+TV  Q ++ +V     HQGL L+ +PL     + +      
Sbjct: 59  KQAVNWILNRAHNLEMKVETVSKQHLNLLVD-NRPHQGLVLDASPLELVPCEYLERPSIQ 117

Query: 133 ----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                + + LD V DP N GAILRS       G++   + S   S V++K+++GALE + 
Sbjct: 118 DGRSPVWVALDEVIDPQNFGAILRSCHYLGATGVVVCAKNSAPLSGVVSKASAGALEVME 177

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
                N+   L      G++ +G SS+ +  P+++        L+LG EG+GLR   + +
Sbjct: 178 IQSCRNMMKFLDTSVQNGWRAVGASSEPRALPIQELEPGLPTILVLGNEGRGLRTNVKRS 237

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
            T +  +     + +LNVS AA + L+
Sbjct: 238 CTELVSIK-ADAVDSLNVSVAAGILLH 263


>gi|226355931|ref|YP_002785671.1| rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA methylase)
           [Deinococcus deserti VCD115]
 gi|226317921|gb|ACO45917.1| putative rRNA (adenosine-2-O-)-methyltransferase (SpoU rRNA
           methylase) [Deinococcus deserti VCD115]
          Length = 270

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/273 (22%), Positives = 107/273 (39%), Gaps = 18/273 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I SL++ H  +L R            +  R       + + G   ++ A+   S    
Sbjct: 5   ETITSLQNPHVKRLVR-----------LRNRREREAHGVILIEGARELARAVQ-GSVPPH 52

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            L       +          P     +     +K+ G+E       L  A L +P L   
Sbjct: 53  TLYCCPELYSPEARSLAATLPGDRLELSRAAFEKVSGRENPDG--LLGVADLPAPRLPEP 110

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N  +L+VL  +  P N+GAILRSA A    G++   R +      + +S+ G++  +P 
Sbjct: 111 GNDAVLVVLHGLEKPGNVGAILRSADAAGAQGVLVLGRGADPYGPNVIRSSQGSVFTMPV 170

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             +   T AL+ + + GF T+  + D+ +         ++AL+LG E  GL    +    
Sbjct: 171 AVLDEGT-ALEWLSTRGFTTVACTPDAPRTYWDAPLTGRVALLLGTEHAGLPESWR-HTD 228

Query: 250 SMAHLHMP--GIIKALNVSNAAAVALYITQNHF 280
               + M       +LNV+ AAA+ L+      
Sbjct: 229 HSVSIPMHEGSGADSLNVATAAALVLFECARQR 261


>gi|256820057|ref|YP_003141336.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256581640|gb|ACU92775.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 267

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 115/261 (44%), Gaps = 10/261 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIF---QLLATKNALAR 80
            +   KK+   ++KSR   +     + G   +  AL        +    ++ A ++ L  
Sbjct: 7   QNPLIKKIVLLSEKSRERKKEGICVVEGAREIRLALEGGYTLETLLYQPEIFAEEHLLKL 66

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLD 139
           L   A   +P  +     +   KI  + +    +AL +T      TL  V +S LL+V +
Sbjct: 67  LSHTAQRVNPIAI---SKEVYQKISYRSSTEGVIALIQTKKHSLDTLAFVTDSPLLLVAE 123

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIGA+LR+A A + D +I     +   +  + +S+ G +  +P     + T+ +
Sbjct: 124 APEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIA-TGSTTEVI 182

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             + + G  +   +  + KP  +    +  A+++G E +GL  +    +T    + M G+
Sbjct: 183 DFLKAKGINSYCAALTAFKPYYEVSFEEASAIVVGTEDQGLTEEWLTHSTQNIIIPMEGV 242

Query: 260 IKALNVSNAAAVALYITQNHF 280
           I ++NVS AAAV ++  +   
Sbjct: 243 IDSMNVSVAAAVLIFEAKRQR 263


>gi|308389284|gb|ADO31604.1| putative RNA methyltransferase [Neisseria meningitidis alpha710]
          Length = 261

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 98/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +  +   +  +   +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGKPV-GVYIPEGKMPS-EEIR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   + +V    + KI         LAL    +  P   A+      +VLD V 
Sbjct: 66  RLRAVVPEGRIFSVSDGILKKISSLTCADDVLAL----IDIPDAGALPAGGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  K  + + S  + ++  GA   +     ++L   L   
Sbjct: 122 DPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLDIYSQADLEIWLASY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQVVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|291008734|ref|ZP_06566707.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 253

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 8/240 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +YG   V AAL++   ++ +++  +    A+     +A       V+      +  + G 
Sbjct: 14  VYGRKPVLAALSDYDLRVDKVIIAEGLGGAVISEIKEAAADRAVRVQRASAHRVKVLAGN 73

Query: 108 EAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
               QG+  +       PL     D     + +++LD +  P N+G ILR+A A   DGI
Sbjct: 74  GRHDQGVLADVVARKMRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGI 133

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +   R   S   ++ K+++G   H P +R      A + +   G+    L + +++ + +
Sbjct: 134 VVPHRGVASLDPLVIKASAGVAFHAPVLRAQTAGHAAELLTEAGYPLYALEAGAQESIYE 193

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                +   +LG+E  GL    Q        + M G +++LNV++AAAV  +       K
Sbjct: 194 ADFGSRAVFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRTGK 253


>gi|238752954|ref|ZP_04614415.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
           ATCC 43380]
 gi|238708815|gb|EEQ01072.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia rohdei
           ATCC 43380]
          Length = 371

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 125 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 184

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 185 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAQDCVLALEDVGNPHNLGGIMRTC 243

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 244 AHFGINGVLLQDP-AILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 302

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 303 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 362

Query: 274 -YITQN 278
            +  QN
Sbjct: 363 EWWRQN 368


>gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           schoenbuchensis R1]
          Length = 279

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 104/283 (36%), Gaps = 18/283 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+     + ++I SL          ++   K +++ NQK ++ ++       G+  V  A
Sbjct: 1   MDTQKTGQVKEITSL----------SNPIIKSLKALNQK-KNRNRDGVFMAEGLKLVIDA 49

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLAL 116
           L N    I  L+ +KN +     +            V     + ++ I  ++     + +
Sbjct: 50  L-NLGWAIQTLILSKNKVGNTVIENIAARTVARGGFVIKASQKVMESITRRDNPQTVVGI 108

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                    +       + + LD V DP N+G I+R+A A    G++     +   S   
Sbjct: 109 FKQQWHPIEMIKGLTQDVYIALDRVRDPGNLGTIIRTADAVGAKGVMLIGETTDPFSPET 168

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGA 235
            ++  G++  +P  R S         H  G   IG    +             I L++G 
Sbjct: 169 VRATMGSIFSVPLYRFSESAFLNWSTHFKGI-IIGTHLKTSVDYRSVDLKKGPIILLMGN 227

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E +GL     +    +  +   G   +LN++ A AV LY  + 
Sbjct: 228 EQQGLPDVLADRCDQLVRIPQNGRADSLNLAIATAVMLYEIRR 270


>gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 291

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 92/258 (35%), Gaps = 8/258 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++  QK RH  +       G+  V  AL+     I  L+  + A      + 
Sbjct: 32  SNPIVKDIRALAQK-RHRDETGLFLAEGLKLVGDALDAGWE-IQTLVIARAAAGHEFLEK 89

Query: 86  NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                      V     + ++ I  ++     + +    L       V    +++ LD V
Sbjct: 90  TAARTVSLGGDVLEANAKVLEAITRRDNPQNAVGVFRRRLTPLAKLDVSGRNVIVALDRV 149

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LR+A A    G++         S    ++  G++  +P  + S   + L+ 
Sbjct: 150 RDPGNLGTVLRTADAAGATGVVLIGETVDPFSLETVRATMGSIFAVPLAKASE-AEFLEW 208

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +     G   +      +         L++G E  GL P        +  +   G  
Sbjct: 209 RKGFSGLVAGTHMEGAVDYREPRYGAQPTILLMGNEQAGLTPSLARICDVLVRIPQSGRA 268

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A  V L+  + 
Sbjct: 269 DSLNLAVATGVMLFEARR 286


>gi|238060046|ref|ZP_04604755.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237881857|gb|EEP70685.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 297

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 103/256 (40%), Gaps = 12/256 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDAN 86
           DY+ +     ++R           G   +  AL    P+R         + LA LD    
Sbjct: 40  DYRALTDVELRTRWEPPHGLFIAEGELVLRRALRAGYPARSFLVDAKRVDQLADLDT--- 96

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                PV    P  +++  G   VH+G+        L      + +++  ++L+ VN+  
Sbjct: 97  --GDAPVYAATPDVLERATGFH-VHRGVLASFRRKPLPDAAGVLADARRAVILEDVNNHT 153

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI R+  A   D ++ +   +        + + G +  +PY R+    +AL  + + 
Sbjct: 154 NLGAIFRAVAALGVDAVLLSPSCADPLYRRSVRVSMGEVFAVPYARLEPWPEALAGVRAA 213

Query: 206 GFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF  + ++              +  + AL+LGAEG GL     + + +   + M   + +
Sbjct: 214 GFTVLAMTPAPDAVPIQRLTVAQRARSALLLGAEGAGLTRAALDASDARVVIPMRRGVDS 273

Query: 263 LNVSNAAAVALYITQN 278
           LNV+ A AVA +    
Sbjct: 274 LNVAAATAVACWELGR 289


>gi|256850851|ref|ZP_05556240.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260661062|ref|ZP_05861976.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282934478|ref|ZP_06339733.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297205725|ref|ZP_06923120.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256615913|gb|EEU21101.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260547999|gb|EEX23975.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281301425|gb|EFA93714.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297148851|gb|EFH29149.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 255

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 100/241 (41%), Gaps = 9/241 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  Q     + G H V  A  +     + LLAT+ A  +L    +L           + +
Sbjct: 23  YREQEGFYLIEGFHLVDEAFKSKLNFKY-LLATQAAFEKLSIQYHLDLTDKRLIQINERV 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K +      Q + +     ++       N    ++LD + DP NIG I+R+A A   +G
Sbjct: 82  AKHLSATTNSQDVFMVLK--INQPKHFTFNFGKWILLDSLADPGNIGTIIRTADAAGFNG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPL 220
           ++ ++  +   +    ++  G+  HIP I+ ++L   +++             D + K L
Sbjct: 140 VVLSENCADLYNPKTQRAMQGSQFHIPIIK-ADLLKTIEQFKENYIPVYASVLDDEAKEL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               K  ++ALI+G E  G+       A     + + G  ++LN + AA + +Y    HF
Sbjct: 199 PDFEKTKELALIIGNEANGVSGDAVNLADEKLFIPIKGQAESLNAAIAAGIMIY----HF 254

Query: 281 A 281
           A
Sbjct: 255 A 255


>gi|284928667|ref|YP_003421189.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
 gi|284809126|gb|ADB94831.1| rRNA methylase, putative, group 3 [cyanobacterium UCYN-A]
          Length = 236

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 15/214 (7%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKIVGKEAVHQ 112
            AAL N  R++ ++  T N L      +NL          V  V  Q + +I    + HQ
Sbjct: 1   MAALEND-RQLNRIWVT-NKLRHDSRFSNLLRISKSKGAVVDEVSLQRLSQIT-NGSNHQ 57

Query: 113 GLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G+A + +P    TLD +        +  ++++ D + DP N+GAI+R++ A  C G+I  
Sbjct: 58  GIAAQVSPYSYYTLDRLITKAKQESDQPVIIIADGIVDPQNLGAIIRTSEAMGCQGLIIP 117

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           +R + S ++ +AK A+GALE  P  R+ NL  AL+ + + GF   G  ++  K L     
Sbjct: 118 QRRAASITSSVAKVAAGALEFFPIARVINLNRALETLKAEGFWIYGTVAEGGKNLPNFDF 177

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +  I L++G+EG GL   TQ     +  + + G 
Sbjct: 178 SCAIGLVIGSEGNGLNLLTQRYCDELLSIPLEGK 211


>gi|182439778|ref|YP_001827497.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780442|ref|ZP_08239707.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468294|dbj|BAG22814.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326660775|gb|EGE45621.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 272

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 9/241 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A          LL+ K      D    +P
Sbjct: 17  DYIGLTDVELRRRREPAEGLFIAEGEKVIRRARQTGYEMRSMLLSAKWVDVMRDVIDEVP 76

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              PV  V P+  +++ G   VH+G     +  PL   + + +  ++ +++++ VND  N
Sbjct: 77  --APVYAVAPELAERVTGYH-VHRGALASMQRKPLP-ASEELLATARRVVIMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R+     AL+ +   G
Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLEAWPKALEGVREAG 192

Query: 207 FQTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F+ + L+ D+K   +++   +  +++AL+LGAEG GL  +    A +   + M   + +L
Sbjct: 193 FRLLALTPDAKATSIDEAAPHRLERVALMLGAEGDGLSTQALMAADAWVRIPMAHGVDSL 252

Query: 264 N 264
           N
Sbjct: 253 N 253


>gi|19113497|ref|NP_596705.1| ribose methyltransferase [Schizosaccharomyces pombe 972h-]
 gi|74627042|sp|O94631|MRM1_SCHPO RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|4456828|emb|CAB37444.1| ribose methyltransferase [Schizosaccharomyces pombe]
          Length = 301

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 50/293 (17%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NL 87
           KK ++   K R   + ++ F++G H+V  AL    R+   L   +NA    +++     L
Sbjct: 14  KKAKAHLSKERRLIKEDSEFVFGTHSVKNALATRKRECRALYV-QNADIHSEFEEFLNKL 72

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------------ 129
            +  P+K+V  + +++I      H G+ LE + L  PT+  +                  
Sbjct: 73  QYKIPIKSVNKEHLNQITACR-PHNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPH 131

Query: 130 ------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                           L + +D + DP N+GA++RSA      GI+ +K+++   S V++
Sbjct: 132 NDLNEGKSSSSDNYPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVS 191

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---SSDSKKPLE------QEIKNDK 228
           K+++GALE      + N    L+     G++ IG      D+K  +        E+ N+ 
Sbjct: 192 KASAGALEVFNISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHKIKTELMNEP 251

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQN 278
             L+LG+E KGLR       +    +   G    + +LNVS AA + LY   N
Sbjct: 252 KILVLGSE-KGLRTNILTQCSHYVSIP--GGDKYVDSLNVSVAAGILLYSLVN 301


>gi|238795639|ref|ZP_04639154.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           mollaretii ATCC 43969]
 gi|238720758|gb|EEQ12559.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           mollaretii ATCC 43969]
          Length = 358

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 112 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 171

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 172 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 230

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 231 AHFGINGVLLQDP-AILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 289

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 290 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 349

Query: 274 -YITQN 278
            +  QN
Sbjct: 350 EWWRQN 355


>gi|330685097|gb|EGG96763.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
           VCU121]
          Length = 246

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 13/227 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            + GVH +  A  +    I QL     +             F +       + + +    
Sbjct: 31  LIEGVHLIEEAYQSG-LVIEQLFVVDPSRTDSSLIEYANETFEINL----KVAESLSGTV 85

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
             QG               +  ++ ++++D + DP N+G ++R+A A   D I+  K  +
Sbjct: 86  TPQGFFAVIKKPDYD----ITTAKQVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTA 141

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                 + +++ G++ HIP I   +L   +   +       G + D+    ++    +  
Sbjct: 142 DPYQDKVLRASQGSVFHIPVIS-ESLQSYINTFNG---PVYGTALDNAVSFKEVEAQETF 197

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ALILG EG+G+ P   E  T    + + G  ++LNV+ A ++ LY  
Sbjct: 198 ALILGNEGEGVDPALLEHTTQNITIPIYGQAESLNVAIAGSILLYQL 244


>gi|270296205|ref|ZP_06202405.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273609|gb|EFA19471.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 265

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRFEPDKGLFIAESPKVIKVALDVGYEPLALLCEHKHIYGDAAEIIERCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + + ++ G       L     P+     D  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +    D L ++   GF+T  +
Sbjct: 140 SAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGEL---GFRTAAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D+   ++  +     ++A+++G EG GL  +    A  +  + M   + +LN
Sbjct: 197 ALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLN 251


>gi|242281274|ref|YP_002993403.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           salexigens DSM 2638]
 gi|242124168|gb|ACS81864.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           salexigens DSM 2638]
          Length = 251

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 98/253 (38%), Gaps = 14/253 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTV 96
            + T + +N  + G   V   L +   +I  L   K    +           +    K  
Sbjct: 2   KKQTREDDNTIIAGRKPVQELLLDSPERIDLLYLQKGRQDKNFERTIQRCKKYGIKYKIA 61

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAI 150
               + ++      HQG+    A L     D +  +       LL+VLD V DP N+G +
Sbjct: 62  DKAELGRV--FSGNHQGVIARVAALPFADFDDMLENLADSPLPLLVVLDQVQDPGNVGVL 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            RS  A    GI+T K           K+++GAL  +P  R++N++ AL K    G    
Sbjct: 120 ARSLYALGGAGIVTAKHGGAFLGPAAVKASAGALNKLPVARVNNISQALDKAIDMGINIY 179

Query: 211 --GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             GL  DS      EI      L+LG E KG+R   ++    + H+       +LNV+ A
Sbjct: 180 GAGLDDDSSSAYTAEIHT-PAILVLGNEEKGIRFNVEKRCQKLIHIPFRRDFDSLNVAQA 238

Query: 269 AAVALYITQNHFA 281
            A+ +        
Sbjct: 239 GAMLISEFARRLG 251


>gi|302561591|ref|ZP_07313933.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
 gi|302479209|gb|EFL42302.1| rRNA methyltransferase [Streptomyces griseoflavus Tu4000]
          Length = 296

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 109/281 (38%), Gaps = 24/281 (8%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSR- 66
           S ++ S + S  A  RR  +            R+    E LFL  G   V  A  + S  
Sbjct: 15  SPELISPRSSRVAAARRLGK------------RNFRGKERLFLAEGPQAVREAAAHRSAG 62

Query: 67  --KIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
              + +L AT +A  R              V       I  I       QGL      L 
Sbjct: 63  AATLVELFATVDAAERYADIVGAARDAGARVHLASEDVIADI-STTVTPQGLVGVCRFLD 121

Query: 123 SPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +P  + +    +L+ VL HV DP N G +LR A A   + ++ T       +    +++ 
Sbjct: 122 TPFEEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKAVRASV 181

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEG 237
           G+L H+P      +  A+  +   G + +       + L+ E+         A + G E 
Sbjct: 182 GSLFHLPVAVGVPVGQAVTGLRDAGVRLLAADGAGDRDLDDELDKGTMGGPTAWVFGNEA 241

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            GL  +T+    ++  + + G  ++LN++ AAAV LY +  
Sbjct: 242 WGLPEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASAR 282


>gi|261392545|emb|CAX50100.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
           Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
           8013]
          Length = 261

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 98/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +  +   +  +   +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPV-GVYIPEGKMPS-EEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   V +V    + KI         LAL    +  P   A+      +VLD V 
Sbjct: 66  RLRAVVPEGKVFSVSDGILKKISSLTCADDVLAL----IDIPDAGALPAGGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  K  + + S  + ++  GA   +     ++L   L   
Sbjct: 122 DPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLRAGMGAHFLLDIYSQADLEIWLASY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQVVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|254883838|ref|ZP_05256548.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641488|ref|ZP_07996178.1| rRNA methylase [Bacteroides sp. 3_1_40A]
 gi|254836631|gb|EET16940.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386889|gb|EFV67778.1| rRNA methylase [Bacteroides sp. 3_1_40A]
          Length = 268

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 20  LTETQLRQRMEPGKGVFIAESPNVISRALDAAYEPLALMCERKHISGSAAHIIKRCGDVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+   + L   +  ++ +GF+T  +
Sbjct: 140 SAAALGIDAVLLTRNSCDPLNCRAVRVSMGSVFLVPW---TWLNGTIGDLNKFGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D    ++  I     ++A+++G EG GL  KT   A  +  + M   + +LN
Sbjct: 197 ALTDDSISIDHPILAAEPRLAIVMGTEGDGLPYKTIAEADYVVRIPMAHGVDSLN 251


>gi|163814438|ref|ZP_02205827.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
 gi|158450073|gb|EDP27068.1| hypothetical protein COPEUT_00589 [Coprococcus eutactus ATCC 27759]
          Length = 301

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 3/203 (1%)

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
           A   L+    +    PV T   + + K+ G   +   L      +L        ++  + 
Sbjct: 96  ADVVLEHIMAIGGDIPVYTAEYEVLKKLTGFALIRGLLCAMRRKVLPSPEGVCSDAHRIA 155

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL++V +P N+GAI RSA A   D ++ T   S       A+ + G +  IP+  I ++T
Sbjct: 156 VLENVMNPINVGAIFRSAAALGMDAVLLTGGCSDPLYRRSARVSMGTVFQIPWTYIGDMT 215

Query: 197 DALQKMHSWGFQTIGLSSDSKK-PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAH 253
             +  +H+ GF+T  ++  +    +        +K+A+ILG EG+GL+  T   +     
Sbjct: 216 AGMDILHAMGFKTASMALRNDTIDINDPRLKEVEKLAVILGTEGEGLKTSTIYASDFTIK 275

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           + M   + +LNV+ A+AVA +  
Sbjct: 276 IPMFHGVDSLNVATASAVAFWEL 298


>gi|189467568|ref|ZP_03016353.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
           17393]
 gi|189435832|gb|EDV04817.1| hypothetical protein BACINT_03958 [Bacteroides intestinalis DSM
           17393]
          Length = 267

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +  AL+     +  L   K+         +     P
Sbjct: 20  LTEAQLRNRIEPDKGLFIAESPKVIRVALDAGYEPLALLCEQKHITGDAADIISRCGDVP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P      D  R+++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGGRELLATLTGYVLTRGVLCAMRRPAPRTVEDTCRDARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+   + L   L  +   GF+T  +
Sbjct: 140 SAAALGMDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLDGTLSDLARHGFRTAAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D+   +   +     ++A+++G EG+GL P T   A  +  + M   + +LN
Sbjct: 197 ALTDNSISIADPVLTSEPRLAIVMGTEGEGLPPDTIAAADYVVRIPMAHGVDSLN 251


>gi|238759744|ref|ZP_04620903.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
           ATCC 35236]
 gi|238702070|gb|EEP94628.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia aldovae
           ATCC 35236]
          Length = 296

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 90/248 (36%), Gaps = 15/248 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVP 97
              + E   +YG +   A   +    I +       T      L W A     + V  V 
Sbjct: 49  RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFRDALKWMAANRKAYHV--VE 106

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILR 152
              + K  G E  H G+            +            ++ L+ V +PHN+G I+R
Sbjct: 107 EDELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMR 165

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +   F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  
Sbjct: 166 TCAHFGINGVLLQDP-AILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTT 224

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           SS     L +     K+ L+LG E  GL     +       +   G +++LNVS A  + 
Sbjct: 225 SSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNVSVATGIL 284

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 285 LAEWWRQN 292


>gi|38233754|ref|NP_939521.1| putative rRNA methyltransferase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200015|emb|CAE49684.1| Putative rRNA methyltransferase [Corynebacterium diphtheriae]
          Length = 272

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 100/242 (41%), Gaps = 6/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           +S    + +     G ++V AA+   +     L  T+ A  R +          V   P 
Sbjct: 24  RSAGRKKVDRFLAEGENSVEAAVATGAAT--DLFVTEKAAERFEAIVTAAGHMGVFVHPI 81

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156
                K +       G+     P+L    +A++ N  L+ V     +P N G ++R A A
Sbjct: 82  TDRAAKSLSDTMTTTGIFAVCLPVLWSAREALKGNPSLVCVAVETGEPGNAGTLVRVADA 141

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I        +S    ++++G+L HIP +R  ++    Q + +   Q +  ++  
Sbjct: 142 MGADCVIFAGTTVDPQSPKAVRASAGSLFHIPVVREPDMQKVWQILRARNVQMLATAAQG 201

Query: 217 KKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+   E+     A ++G E  GL  +    A     + + G  ++LN++ AA++ +Y
Sbjct: 202 EINLDTAGELLEKPTAWLMGNEAHGLNDEALSAADHSVRIPIRGRAESLNLATAASICMY 261

Query: 275 IT 276
            +
Sbjct: 262 ES 263


>gi|331698924|ref|YP_004335163.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953613|gb|AEA27310.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 256

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 11/252 (4%)

Query: 39  KSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVK 94
           +S   S  +    +YG   V  AL + S  + ++L  + +         DA       V+
Sbjct: 5   RSSTRSPKDTFITVYGRKPVLEALADESLVVDKVLLAEGSRGEPVRAIRDAARARGVRVE 64

Query: 95  TVPPQTIDKIVGKEAVHQGLALE-TAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIG 148
           T     +  + G     QG+  +  AP ++P  + V     R    ++VLD V +P N+G
Sbjct: 65  TASAHRVKVLAGNGRHDQGVLADVVAPRMAPVEEFVSDLGTRRGASVLVLDAVTNPANVG 124

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILRSA A   DG++  +R  P+   ++ K+++G     P +R +        + + GF 
Sbjct: 125 MILRSATAAGLDGVLLPRRGVPAIDPLVIKASAGVAFSAPVLRSATAAQGCAVLRAAGFA 184

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             GL++     LE E+  +++AL+LG E +GL    +E       + M G +++LNV++A
Sbjct: 185 VHGLAAGGDSLLEAEL-PERVALVLGNESEGLSADVREELDGTLAIPMFGGVESLNVASA 243

Query: 269 AAVALYITQNHF 280
            AVA Y      
Sbjct: 244 GAVAAYELLRRR 255


>gi|332072055|gb|EGI82542.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA17570]
          Length = 212

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 12/220 (5%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++ A +N   +L   A  P       +    +  +   +   QG+   
Sbjct: 3   EEAVQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    
Sbjct: 55  VQKEEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAE 236
           +S  G+  H+P  R+++    L +        +  +        +E+ + +   L++G E
Sbjct: 113 RSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNE 171

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+G+ P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 172 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 211


>gi|317480785|ref|ZP_07939871.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|316903126|gb|EFV24994.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 265

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRLEPDKGLFIAESPKVIKVALDAGYEPLAFLCEHKHIYGDAAEIIERCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + + ++ G       L     P+     D  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +    D L ++   GF+T  +
Sbjct: 140 SAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGEL---GFRTAAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D+   ++  +     ++A+++G EG GL  +    A  +  + M   + +LN
Sbjct: 197 ALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLN 251


>gi|332284294|ref|YP_004416205.1| RNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330428247|gb|AEC19581.1| RNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 264

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 103/267 (38%), Gaps = 19/267 (7%)

Query: 24  RRNHRDYKKM----QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NA 77
            R++  YK++    +   +K+      +++ L G+H   A L +       L   +    
Sbjct: 6   SRDNPLYKQLMRLARGKREKNADGRPAQHVLLEGIHLCQAWLQHMGEPELALFDLQRLET 65

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVRNSQL 134
              L   AN        +  P+    +   E   QG+    +  AP+L   +     +  
Sbjct: 66  QTELQSLANALPAGLCHSCEPRLAAGLSQVEHG-QGVYFLVMAPAPVLPARI-----THN 119

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + LD + DP N+G +LR+A A        +   + + SA + +SA GA   +      +
Sbjct: 120 CLWLDRLQDPGNVGTLLRTAAAAGIQHAYLSTGCASAWSAKVLRSAQGAHFVMTIHEHVD 179

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L      +       I  + D  +PL       + A + G EG+G+ P     A     +
Sbjct: 180 LAALRGCLA---VPLIATALDDAQPLYDASLPAQCAWVFGNEGQGVDPVLLAQADMRVFI 236

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
                +++LNV+ AA V L+  Q   A
Sbjct: 237 PQAADVESLNVAVAAGVCLFE-QRRLA 262


>gi|225022603|ref|ZP_03711795.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944511|gb|EEG25720.1| hypothetical protein CORMATOL_02645 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 266

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 104/242 (42%), Gaps = 6/242 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++    +     + G ++V AA+   S     +  T  A  R            V   P 
Sbjct: 25  RTAVRRKEGRFIVEGSNSVEAAVATGSAT--DVFITAEAAKRFADIVVAAGHMQVFVHPI 82

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVA 156
                + +   A   G+     P+L    +A+ R+ +L+ V    NDP N G ++R + A
Sbjct: 83  TAGAARSLADTATAPGIFAVCRPVLWRVGEALGRSPRLVTVAVGTNDPGNAGTLVRVSDA 142

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I        +S+   ++++G++ H+P  R  ++ + L+ +   G Q +  ++D 
Sbjct: 143 LGADAVIFAGDTVDPQSSKAVRASAGSVFHVPVARSRDVGEVLRLLKGRGLQLMATAADG 202

Query: 217 KKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L    E+     A + G E  GL P+  E A     + + G  ++LN++ AA++ L+
Sbjct: 203 EVDLGTANELLARPTAWLFGNEAHGLGPELMELADHRVAIPIKGSAESLNLATAASICLW 262

Query: 275 IT 276
            +
Sbjct: 263 ES 264


>gi|254779454|ref|YP_003057559.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
 gi|254001365|emb|CAX29350.1| 23S rRNA methyltransferase [Helicobacter pylori B38]
          Length = 227

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVITHLLNSHKEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|314936683|ref|ZP_07844030.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655302|gb|EFS19047.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
           hominis C80]
          Length = 246

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 96/235 (40%), Gaps = 17/235 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQ 99
              +     + G+H +  A  +    I QL   +     +RL   A   +   +K     
Sbjct: 23  ERDKTGLALIEGIHLIDEAFKSNI-MIKQLFVIEPERTDSRLLEYAKEAYEINMKVAES- 80

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                +      QG               +  ++ +++LD + DP N+G ++R+A A   
Sbjct: 81  -----LSGTITPQGFFAVI----EKPKHNISKAKQVLLLDRIQDPGNLGTLIRTADAAGI 131

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  K  + +    + +++ G++ HIP +  + L   +++         G + ++   
Sbjct: 132 DMVVMEKGTADAYQDKVMRASQGSVFHIPIV-TTELNKFIEQFDG---PVYGTALENAVS 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     D  AL+LG EG+G+  +     +    + + G  ++LNV+ A ++ LY
Sbjct: 188 YKNIESQDTFALLLGNEGEGVNKELLAHTSQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|145595526|ref|YP_001159823.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145304863|gb|ABP55445.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 321

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 107/257 (41%), Gaps = 14/257 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDAN 86
           DY+ +     ++R           G   +  AL    P+R             R++  A+
Sbjct: 68  DYRALTDVELRTRWEPPHGLFIAEGELVLRRALRAGYPARSYLV------DAKRVEQIAD 121

Query: 87  LPHP-FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDP 144
           L     PV    P  + +I G   VH+G+         PT  + +  ++ +++L+ VN+ 
Sbjct: 122 LHTGEAPVYAATPDVLRQITGFH-VHRGVLASFRRQRQPTAAEVLGTARRVVILEDVNNH 180

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G+I R+      D ++ +   +        + + G +  +PY  +    DAL ++ +
Sbjct: 181 TNLGSIFRAVAGLGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYATLGPWPDALAEVRA 240

Query: 205 WGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF  + L+        Q ++     + AL+LGAEG GL  +  E +     + M   + 
Sbjct: 241 AGFSVLALTPAPDAVPIQRLEPGQRARAALLLGAEGSGLTREAMEASDVRLVIPMRRSVD 300

Query: 262 ALNVSNAAAVALYITQN 278
           +LNV+ A AVA +    
Sbjct: 301 SLNVAAATAVACWELGR 317


>gi|289551058|ref|YP_003471962.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180590|gb|ADC87835.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
           HKU09-01]
          Length = 246

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 112/265 (42%), Gaps = 24/265 (9%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S ++S   K++  ++  KK        R   +     + G+H +  A  +    I 
Sbjct: 2   EQITSAQNS---KIKNANKLKKK--------RERDKTGQALIEGIHLIEEAYQSN-LTIK 49

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           QL   +         A + +      +  +  + + G     QG               V
Sbjct: 50  QLFIIE---PERTEQALIDYSEETFQINMKVAEALSGT-ITPQGFFAVIEKPNYD----V 101

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +++ ++++D + DP N+G ++RSA A   D I+  K  + +    + +++ G++ HIP 
Sbjct: 102 THAKQVLLIDRIQDPGNLGTLIRSADAAGIDLIVMEKGTADAYQDKVLRASQGSVFHIPV 161

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +  ++L   +++         G + ++    +     +  AL+LG EG G+     E  T
Sbjct: 162 V-TADLQGFIKQFEG---PVFGTALENAVSYKNLEPQETFALLLGNEGDGVNNALLEHTT 217

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
               + + G  ++LNV+ A ++ LY
Sbjct: 218 KNLIIPIYGKAESLNVAIAGSILLY 242


>gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63]
          Length = 260

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 107/258 (41%), Gaps = 12/258 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++ + K      + +++  +       GV     A+ + +  I    A++ A  +   
Sbjct: 6   SKDNSNIKNAVKLRKSAKYRRESGLFIAEGVRICMDAMLSKAH-IDTFFASEKASEKYAD 64

Query: 84  DANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPT-LDAVRNSQLLMVLDH 140
           D +    +  KT  V  +  +++   E+  QG       L      D ++     + LD+
Sbjct: 65  DFSNLQKYSDKTFIVSDKIFNQMCDTES-PQGFLCVIKALDKTACFDKIKTGDKFLALDN 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G ILR+A A +  GI+ +       S  + + + GA+  +P++    ++  L 
Sbjct: 124 LQDPGNLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGSMGAVFRLPFVVSDTISGYLN 183

Query: 201 ---KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
              ++ S+      + S S   +          + +G EG GL+ +T         + M 
Sbjct: 184 AHSELESY----AAVVSASADKITTTPFVSPCIVAVGNEGNGLKEETISACKHKITIPME 239

Query: 258 GIIKALNVSNAAAVALYI 275
           G  ++LN + AA++ ++ 
Sbjct: 240 GRAESLNAAVAASIIMWE 257


>gi|37520123|ref|NP_923500.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35211115|dbj|BAC88495.1| gll0554 [Gloeobacter violaceus PCC 7421]
          Length = 265

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 105/257 (40%), Gaps = 4/257 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD- 84
            +   K+++  +  ++         + G H V+AAL     ++  + AT+  +       
Sbjct: 6   QNPVIKQLRKLHA-AKERQAQGLFLVEGTHPVAAAL-AGGWELEFVCATEAWVGEHPAMH 63

Query: 85  -ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A        +TV P  I+ +         +A       +      R+  LL++ + + D
Sbjct: 64  TALSGRAGRYETVAPAVIEALADTVHPSGVVAAVRRRADAWRPLLERDVSLLVLGERLQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++RS  A   DG++ +      +   + ++++G     P + + +LT  +  + 
Sbjct: 124 PGNVGTLVRSCAAVGADGLVLSADSVDPDHPKVLRASAGLWFRSPPLSVPDLTACVADLV 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G Q +   + + + L +       A +LG+EG+GL    +        + +   +++L
Sbjct: 184 RRGVQVLAADAGAGRSLWECDLRRPTAFVLGSEGQGLSEPLRRCLPERVGIPLAPGVESL 243

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ + A+ L+      
Sbjct: 244 NVAVSGALLLFEAARQR 260


>gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
 gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
          Length = 287

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 12/262 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ + K +H  +  +    G+  V  A++     I  L+  K    +   + 
Sbjct: 23  SNPVIKDIRALSMK-KHRDETGSFLAEGLKLVIDAIDQGWN-IRTLIYAKAQRGKPQVEK 80

Query: 86  NLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLD 139
                      V  V  + +  I  ++   Q +       L+P LDAV        + LD
Sbjct: 81  IAALTVARGGLVLEVSEKVLTAITRRD-NPQAVIAVFEQKLTP-LDAVAPKPDETWIALD 138

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V DP N+G I+R+A A    G+I         S    ++  G++  +P +R S   + L
Sbjct: 139 RVRDPGNLGTIIRTADAAGASGVILIGDTVDPFSTETVRATMGSIFAMPLLRASE-AEFL 197

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                     +G                  + L++G E  GL     ++   +A +   G
Sbjct: 198 TWSKKTAPLVVGSHLKGSVDYRTIAYKGRPVVLLMGNEQAGLPDTLAQSCGKLARIPQTG 257

Query: 259 IIKALNVSNAAAVALYITQNHF 280
              +LN++ A  V L+  + H 
Sbjct: 258 RADSLNLAIATGVMLFEARRHL 279


>gi|15806040|ref|NP_294741.1| rRNA methylase [Deinococcus radiodurans R1]
 gi|6458745|gb|AAF10591.1|AE001953_5 rRNA methylase [Deinococcus radiodurans R1]
          Length = 265

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 6/234 (2%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
             + + G   +  A  +    + +L       +    +   P       +     +K+ G
Sbjct: 33  GVMLIEGARELMRA-ESAGVTVPELFVCPELFSPEAREL-FPEVTGATELSRAAFEKVSG 90

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +E       L  APL +P L    +  +++VL  +  P N+GAILR+A A    G++   
Sbjct: 91  RENPDG--VLGVAPLPAPRLPQPGDDTVVVVLHGLEKPGNVGAILRTADAAGAAGVLVLG 148

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R +      + +++ GA+  +P   +     AL  +    F+T+  + D+          
Sbjct: 149 RGADPYGPNVIRASQGAVFSVPTAVLGE-DAALGWLAEHNFRTVACTPDAPADYWDTPLT 207

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            ++AL+LG E  GL  + +  A     + M G   +LNV+ AAA+ LY      
Sbjct: 208 GRVALLLGTEHAGLPAEWRA-AHQAVRVPMHGQADSLNVATAAALVLYEALRQR 260


>gi|317010773|gb|ADU84520.1| RNA methyltransferase [Helicobacter pylori SouthAfrica7]
          Length = 227

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VVYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAISLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G +     P E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGANMQGSNPREDLAL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSIKMRRNFDSLNVSVAAGILM 223


>gi|238784486|ref|ZP_04628495.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           bercovieri ATCC 43970]
 gi|238714655|gb|EEQ06658.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           bercovieri ATCC 43970]
          Length = 363

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 235

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 236 AHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 294

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 295 HKGVTLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLA 354

Query: 274 -YITQN 278
            +  QN
Sbjct: 355 EWWRQN 360


>gi|296140117|ref|YP_003647360.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296028251|gb|ADG79021.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 265

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 97/242 (40%), Gaps = 11/242 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++    +       G + V++AL      + ++  T++  AR            V  V  
Sbjct: 28  RAAGRRKAGLFLAEGSNAVTSALAAG--LVDEIFVTEDGAARYPDLL----TGRVAYVTD 81

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + +  +        G+      L    +     ++L+ V   V +P N G ++R A A  
Sbjct: 82  RAMRGLSDTVTPP-GIVAVCRALPEGRVPD--GARLVAVPVDVAEPGNAGTVIRVADAVG 138

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D ++         +  + ++++G++ H+P ++  + + A+ ++   G   +  ++D + 
Sbjct: 139 ADAVLLAGDAVDPMNGKVVRASAGSVFHLPVVQERDASAAIAQLKESGLTVLATAADGEV 198

Query: 219 PLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            L+          A + G E  GL    Q  A     + + G  ++LN++ AA++ LY +
Sbjct: 199 SLDDADEMLAAPTAWLFGNEAHGLPRGLQAAADHRIAIPIRGRAESLNLATAASICLYAS 258

Query: 277 QN 278
             
Sbjct: 259 SR 260


>gi|307637236|gb|ADN79686.1| rRNA methylase [Helicobacter pylori 908]
 gi|325995827|gb|ADZ51232.1| rRNA methylase [Helicobacter pylori 2018]
 gi|325997421|gb|ADZ49629.1| putative rRNA methyltransferase [Helicobacter pylori 2017]
          Length = 227

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VVYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFARE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S        + +   K 
Sbjct: 122 FAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQ-AENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K       +  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223


>gi|227495545|ref|ZP_03925861.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831092|gb|EEH63475.1| rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 304

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 107/264 (40%), Gaps = 17/264 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           +  L+D   ++L     DY  M     +S+  ++         + ++ ALN+  +    L
Sbjct: 34  LIHLEDLTDSRLT----DYLHMTDVALRSKTETELGLFMAESKNVITRALNSGYQPRSFL 89

Query: 72  LATKNALARLDWDANL---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-D 127
           ++ K   +  +            PV     + ++ + G   +H+G       L  PT  D
Sbjct: 90  MSPKWVESMREVLERFGPDAGEVPVFIASEEMLETLTGFH-LHRGAMAAMHRLPLPTAAD 148

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            ++ ++ + VL+ + D  N+GAI RSA A   D ++ T   +        + + G +  +
Sbjct: 149 LLKTARRIAVLEDIVDHTNVGAIFRSAAAIGVDAVLVTPSCADPLFRRSVRVSMGTVFQV 208

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSK----KPLEQEIKNDK---IALILGAEGKGL 240
           P+ R+    +  Q     GF+   L+             E+  D    +A +LG+EG GL
Sbjct: 209 PWTRLETWPEP-QLFREHGFEVAALALGENTITLDDYTAELATDPARRVAWVLGSEGYGL 267

Query: 241 RPKTQETATSMAHLHMPGIIKALN 264
           + +T  T      + M   + +LN
Sbjct: 268 KERTLRTVDKTVMIPMQHGVDSLN 291


>gi|315038839|ref|YP_004032407.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|325957278|ref|YP_004292690.1| rRNA methylase [Lactobacillus acidophilus 30SC]
 gi|312276972|gb|ADQ59612.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|325333843|gb|ADZ07751.1| rRNA methylase [Lactobacillus acidophilus 30SC]
 gi|327184008|gb|AEA32455.1| rRNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 255

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 99/234 (42%), Gaps = 5/234 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H    A+    +K   +L T+ AL +++ D ++        +  + I
Sbjct: 23  YRDEENRYLIEGFHLFEEAVK-AGKKYQYVLGTEEALDQVNEDYDIDLDGKNVILINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + +      Q + +     +    +   N    ++LD++ DP N+G I+R+A A   DG
Sbjct: 82  ARHLSSTKNSQEIFMVLK--IDQPKEFPFNYGKWVLLDNLADPGNVGTIIRTADAAGFDG 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPL 220
           ++ +   +   +    ++  G+  HI  I+  +L D +               D S K L
Sbjct: 140 VVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDLADVITDFQDSAIPVYASMLDKSAKQL 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   K  ++ALI+G E  G+       +    ++ + G  ++LN + AA + +Y
Sbjct: 199 QDFEKVPQLALIIGNEAHGVSETIASLSDEKLYIPIKGKAESLNAAVAAGIMIY 252


>gi|145222306|ref|YP_001132984.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145214792|gb|ABP44196.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 268

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 103/253 (40%), Gaps = 6/253 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + S +++    S    +   GV  V   L +       LL T   L  L  D +   
Sbjct: 15  FRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFVP-RALLGTDRRLTELGTDLD-GL 72

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P      + + + +G       LA  +        + +  ++ + VL+ VND  N+G+
Sbjct: 73  AAPFYRATAEVMAEAIGFHLNRGVLASASRAPELTVAEVLDGARTVAVLEGVNDHENLGS 132

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A     D +I     +        + + G    +P+ R +N    L  +    F+ 
Sbjct: 133 VFRNAAGLGVDAVIFGSGCADPLYRRAVRVSMGHALLVPFARAANWPADLNILRDNDFRL 192

Query: 210 IGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + ++ D   P   +    +  ++IA+++GAEG GL+  T  +A     + M     +LNV
Sbjct: 193 LAMTPDPTVPTLADAVSGLTEERIAILVGAEGPGLKEHTMRSADVRVRIPMARGTDSLNV 252

Query: 266 SNAAAVALYITQN 278
           + AAA+A Y    
Sbjct: 253 ATAAALAFYERDR 265


>gi|149173449|ref|ZP_01852079.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
 gi|148847631|gb|EDL61964.1| Gm2251 methyltransferase of 23S rRNA [Planctomyces maris DSM 8797]
          Length = 251

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 13/232 (5%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           H+V AAL      + ++  T  +         D   +   P  +K   PQ + +   ++ 
Sbjct: 9   HSVMAALQTRPIDVTEIRLTAGSAQGSWGDVADEARSQRIPVVIKKSAPQKMKRRQAEDQ 68

Query: 110 VHQ--GLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +  G      P     L+ +          L + LD + DPHNIGAI R+A  F   G
Sbjct: 69  GRRTAGSVALVKPRTPFVLNELFPDSGQETGGLWLALDCIQDPHNIGAIFRTAAFFGVRG 128

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ TK  S   +A +   ASG +E +P+   +NL+ ++ +    G   +G S  +++ + 
Sbjct: 129 IVLTKDRSAPINATVYDVASGGMEAVPFAVETNLSRSMTQAKETGVWIMGTSEHAEEDVS 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              ++    +++G E KGLR  T E    +  L   GI+ +LN S AA + +
Sbjct: 189 VYSQDRPWMVVIGNEEKGLRRLTLEQCDVVTRLTPTGIVDSLNASVAAGIMI 240


>gi|293372857|ref|ZP_06619231.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292632146|gb|EFF50750.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 147

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 66/145 (45%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD V D  N GAI R+    + D +I   R S S +A   K+++GAL  +P  R  NL 
Sbjct: 1   MLDGVTDVRNFGAIARTCECAAVDAVIIPVRGSASVNADAVKTSAGALHTLPVCREQNLR 60

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             LQ +   GF+ +  +        +      + +I+GAE  G+  +          + M
Sbjct: 61  STLQYLKDSGFRIVAATEKGDYDYTKADYTGPLCIIMGAEDTGVSYENLALCDEWVKIPM 120

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
            G I++LNVS AA + +Y       
Sbjct: 121 LGTIESLNVSVAAGILIYEAVKQRN 145


>gi|238787892|ref|ZP_04631688.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           frederiksenii ATCC 33641]
 gi|238723840|gb|EEQ15484.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           frederiksenii ATCC 33641]
          Length = 363

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 117 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 176

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 177 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTC 235

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 236 AHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 294

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 295 HKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLS 354

Query: 274 -YITQN 278
            +  QN
Sbjct: 355 EWWRQN 360


>gi|213962918|ref|ZP_03391178.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213954575|gb|EEB65897.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 269

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 107/259 (41%), Gaps = 6/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   KK+   ++KSR   +     + G   +  AL      +  LL   +  +    + 
Sbjct: 7   QNPLIKKIALLSEKSRERKKQGLCVVEGAREIRLALQ-GGYSLENLLYQPDIFSERQLNE 65

Query: 86  NLPH---PFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHV 141
            L +         +  +  +KI  + +    +AL E       TL       LL+V +  
Sbjct: 66  LLSYTTQKLTPIAISKEVYEKISYRSSTEGVIALVEVKKHGLDTLAFSTKKPLLLVAEAP 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A   D +I     +   +  + +S+ G +  +P    +   + +  
Sbjct: 126 EKPGNIGALLRTADAAHIDAVIIANPKTDLYNPNIIRSSVGCVFTVPIATGT-TAEVIDF 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + +    +   +  + KP  +   ++  A+++G E +GL  +    +T    + M G+I 
Sbjct: 185 LKAKNISSYCAALTASKPYYEVSFSEASAIVVGTEDQGLTDEWLTHSTQNIIIPMEGVID 244

Query: 262 ALNVSNAAAVALYITQNHF 280
           ++NVS AAAV ++  +   
Sbjct: 245 SMNVSVAAAVLIFEAKRQR 263


>gi|307325425|ref|ZP_07604627.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306888894|gb|EFN19878.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 277

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 23/275 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           ++ SLK       RR  +     +SF  K R         + G   V  A+      + +
Sbjct: 5   ELTSLKSPRVTAARRLAK-----RSFRGKERR------FIVEGPQAVREAIAY----LVE 49

Query: 71  LLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           + AT  A  R             PV T   + I ++       QG+      L SP  + 
Sbjct: 50  VYATPEAAERHADILAAARAANLPVLTASDEVIAEMSDT-VTPQGVVGLCRFLDSPFEEI 108

Query: 129 VR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +R   +L+ VL +V DP N G +LR A A   D ++ T       +    +++ G+L H+
Sbjct: 109 LRARPRLVAVLANVRDPGNAGTVLRCADAAGADAVVLTDASVDPYNPKAVRASVGSLFHL 168

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPK 243
           P      +  A+  +   G + +      ++ L+ E    +     A I G E  GL   
Sbjct: 169 PVAVGVPVERAVSGLREAGARVLAADGAGERDLDSELDDRLLGAPTAWIFGNEAWGLPEA 228

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+  A  +  + + G  ++LN++ AAAV LY +  
Sbjct: 229 TRALADEVVRVPIHGRAESLNLATAAAVCLYASAR 263


>gi|108799944|ref|YP_640141.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119869054|ref|YP_939006.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108770363|gb|ABG09085.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119695143|gb|ABL92216.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 248

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 5/238 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AAL      + ++ AT++A A     A L     V  V  +   
Sbjct: 13  RRRAARFLAEGPNLVEAALRRG--VVSEVFATEDAAA---RFAALLAGADVHLVTERAAK 67

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +         +A+   P +S       + +L+ V    ++P N G ++R A A   D +
Sbjct: 68  ALSDTVTPVGLVAVCRMPEVSLDEVLGASPRLVAVAVETSEPGNAGTLIRLADAMGADAV 127

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I         +    ++++G++  +  +   +    +  +H  G   +    D +  L+ 
Sbjct: 128 ILAGNSVDPYNGKCLRASAGSIFGVSVVEAPDTAGLVAALHGAGLTVLATMLDGEVSLDD 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +   A + GAE  GL P     A +   + M G  ++LNV+ AAA+ LY +    
Sbjct: 188 AELSGPTAWLFGAEAHGLAPDVAALADARVTIPMAGSAESLNVAAAAAICLYQSARAL 245


>gi|212550772|ref|YP_002309089.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549010|dbj|BAG83678.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 274

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 106/276 (38%), Gaps = 17/276 (6%)

Query: 17  DSHYAKLRR-----NHRDYKKMQSFNQKSRHTSQPENLFLYGVH-----TVSAALNNPSR 66
            S+  K+ R     ++   K +Q    K+      +   + G+       V   + +   
Sbjct: 2   KSYNNKISRIITSTHNPRIKNIQKLRIKAYERKSQKLFIIEGIREFNLSLVGNYILDSVY 61

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
             F+LL   N+   ++   +         V      KI  +E  HQG+     P L    
Sbjct: 62  ICFELLEKSNSSEIINIIPSNII----YEVSKAVFQKIACRE-NHQGILALAKPKLHLLA 116

Query: 127 D-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           D  + N+ L++VL+ +  P N+GAILR+A A   D  I     +   +  + +S+ G L 
Sbjct: 117 DLNLSNNPLIIVLESIEKPGNLGAILRTAEAAKIDATIICNPSTDIYNPNVVRSSIGCLF 176

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             P    SN  + L  + S   Q       + K           A+++GAE  GL     
Sbjct: 177 SNPIAVASN-EETLAYLKSKSVQIFAAELTAFKQYYNTDFTSASAIVIGAEVNGLTNFWL 235

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + A     + M GII +LNVS + A+  +       
Sbjct: 236 DNAHQRIKIPMQGIIDSLNVSVSVAIITFEAIRQRN 271


>gi|296125362|ref|YP_003632614.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
           DSM 12563]
 gi|296017178|gb|ADG70415.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira murdochii
           DSM 12563]
          Length = 237

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 14/236 (5%)

Query: 49  LFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           +F+   + ++ A+  N    ++           +   A       +K V    ++KIVGK
Sbjct: 1   MFITSKNAITEAISKNLVETLYIKFPISKREKDIIKLAE-KKKVLIKNVDKNEMEKIVGK 59

Query: 108 EAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                 +A +            L   L+  +++ L+ +LD + D HN+GAI+R+A  F  
Sbjct: 60  VYS---IAADIKENAEIGIENFLQKALEK-KDNPLIFILDSITDVHNLGAIIRNAYFFGS 115

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII  K  S   +  + + ++GA  H+P    +NL   ++ M   GF     S + +  
Sbjct: 116 SGIIIPKDNSAPINEKVYEISAGAAYHLPISIETNLNRTIELMKDKGFWIYYASEEGETS 175

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           LE    N   A+ILG E  G+R   ++ +     ++      +LNVS A+AV  Y 
Sbjct: 176 LEDFKFNTPTAIILGNEHSGVRDILKKNSDGSIIINKSNDFDSLNVSAASAVIAYA 231


>gi|325283202|ref|YP_004255743.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
 gi|324315011|gb|ADY26126.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
          Length = 260

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 7/201 (3%)

Query: 83  WDANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
             A L    P   V  +  +   K+ G+E    G+ L + P        +    LL+VL 
Sbjct: 63  EAAELAPQLPMSAVTELSAEAFAKVSGRE-NPDGVLLLSRP-PQERWPTLPPQALLVVLH 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            +  P N+GAILR+      DG++   R +   S  + +++ G++  +P  R  +  +AL
Sbjct: 121 GLEKPGNVGAILRTVDGVGADGVLILGRGADPYSPNVIRASQGSVFTVPL-RQQDEAEAL 179

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +   GF  +  + D+ +   Q     ++AL+LG E +GL    +    S   + M G 
Sbjct: 180 AWLEEEGFTLVACTPDAPRTFWQADLTGRVALLLGTEHEGLPEHWRRH-ESAVSIPMRGQ 238

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LNV+ AAAV LY      
Sbjct: 239 ADSLNVATAAAVVLYEALRQR 259


>gi|308184337|ref|YP_003928470.1| RNA methyltransferase [Helicobacter pylori SJM180]
 gi|308060257|gb|ADO02153.1| RNA methyltransferase [Helicobacter pylori SJM180]
          Length = 227

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +L +      P  +K V  +    +  +  
Sbjct: 4   VIYGKQVVMHILNSHKEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-RGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S        + +   K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQ-AENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|329955404|ref|ZP_08296312.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328525807|gb|EGF52831.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 270

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 6/208 (2%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           A+N     +  L   K+               PV T   + +  + G       L     
Sbjct: 47  AINAGYEPLALLCERKHITGDAATIIERCGNIPVYTGKRELLATLTGYTLTRGVLCAMRR 106

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P      +  R ++ ++V+D V D  NIGAI RSA A   D ++ T       +    + 
Sbjct: 107 PKPHSIEEICREARRIVVIDGVVDATNIGAIFRSAAALGIDAVLLTPTSCDPLNRRAVRV 166

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILGAE 236
           + G++  +P+   + L   L K+H  GF+T  ++  D    ++  +     K+A+I+G E
Sbjct: 167 SMGSVFLVPW---TWLDTTLSKLHDLGFRTAAMALTDDSISIDNPLLATEPKLAIIMGTE 223

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G GL  +T   A  +  + M   + +LN
Sbjct: 224 GDGLSYETIAEADYVVRIPMSHDVDSLN 251


>gi|123443445|ref|YP_001007418.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090406|emb|CAL13274.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 368

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 88/252 (34%), Gaps = 16/252 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVLDHVNDPHNIGA 149
            + K  G E  H G+            +                 ++ L+ V +PHN+G 
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDGIVKDCVLALEDVGNPHNLGG 236

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+   F  +G++     +  ES    ++A G  EHI  I   +    L      G+  
Sbjct: 237 IMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTI 295

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  SS     L +     K+ L+LG E  GL     +       +   G +++LNVS A 
Sbjct: 296 VTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNVSVAT 355

Query: 270 AVAL--YITQNH 279
            + L  +  QN 
Sbjct: 356 GILLSEWWRQNQ 367


>gi|148655189|ref|YP_001275394.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
 gi|148567299|gb|ABQ89444.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
          Length = 262

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 103/276 (37%), Gaps = 27/276 (9%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S  + H           K+++S         +   L L GV  V+ AL + +     L
Sbjct: 2   ITSPANQHV----------KRIRSLASDRHERRRERMLVLEGVRLVADALESGATLTLTL 51

Query: 72  LA------TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSP 124
            A      T    A L     LP         PQ +          QG+    + P ++P
Sbjct: 52  YAPDQLQLTPAGAALLQKLRYLPAS---YEATPQVVAA-ASDTVHPQGVVALASWPHVAP 107

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    LL+V+D V DP N+G +LRSA A     ++ +       +  + +SA GA 
Sbjct: 108 -----GKPGLLLVIDAVQDPGNLGTLLRSAEAVGVAQVLCSVGTVDLYAPKVVRSAMGAH 162

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +   +  +     +++ S          +++ P          AL++G E  GL    
Sbjct: 163 FRLAMEQDLSWDAIGERLASVD-HVYAADPEARMPYYAADWRQPSALLVGNEAHGLSDAA 221

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  AT    + M G  ++LNV+ AA+V L+      
Sbjct: 222 RRLATKQIAIPMRGGTESLNVAVAASVILFEALRQR 257


>gi|302866851|ref|YP_003835488.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302569710|gb|ADL45912.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 294

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 95/242 (39%), Gaps = 9/242 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103
                  G   V  AL      + +L  T  AL R    A        PV  V    +  
Sbjct: 39  AGRFLAEGPQAVREALARTG-TVVELFGTPAALDRYADLAAAAARADVPVSEVTDDALAA 97

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +  +    QGL      L  P   AV R  +L+ VL  + DP N G +LR+A A     +
Sbjct: 98  LT-ETVAPQGLVAVCRHLDVPLEQAVARGPRLVAVLAGIRDPGNAGTVLRTADAAGAGAV 156

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I         +    ++++G+L H+  +R ++   A++ + + G + +  +      L+ 
Sbjct: 157 IFAGEAVDPYNGKCVRASAGSLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDD 216

Query: 223 EIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                      A + G+E  GL  +    A +   + + G  ++LN++ AAAV LY +  
Sbjct: 217 LADAGRLAAPTAWLFGSEAHGLPDELTAAADARVRVPLHGRAESLNLAAAAAVCLYSSAR 276

Query: 279 HF 280
             
Sbjct: 277 AL 278


>gi|303260346|ref|ZP_07346316.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|303265125|ref|ZP_07351038.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
 gi|302638512|gb|EFL68977.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           SP-BS293]
 gi|302645342|gb|EFL75576.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS397]
          Length = 212

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 12/220 (5%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++ A +N   +L   A          V    +  +   +   QG+   
Sbjct: 3   EEAVQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D   N    + L+ V DP N+G I+R+A A    G+I + + +   S    
Sbjct: 55  VQKEEVGQADL--NQGKFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAE 236
           +S  G+  H+P  R+++    L +        +  +        +E+ + +   L++G E
Sbjct: 113 RSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNE 171

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+G+ P   E+A  + H+ M G  ++LNV+ AA + ++  
Sbjct: 172 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIFYL 211


>gi|309812910|ref|ZP_07706638.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308432982|gb|EFP56886.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 270

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 6/248 (2%)

Query: 39  KSRHTSQPENL-FLYGVHTVSAALNNPSRK----IFQLLATKNALARLDWDANLPHPFPV 93
           + R T + E L  + G   +  AL+   R     +   L    A      DA       +
Sbjct: 21  RKRRTRETEGLTLVEGYDELGLALDAGVRPQTLYVCDELMLDAARQHDVIDAARTAGAEI 80

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            TV  Q  +++  +E     LA+  +    P +  +  + LL+V + V  P N+GA+LR+
Sbjct: 81  VTVARQAFERVAYREGPDGFLAVVPSVNAHPRMLDLPANPLLLVAEGVEKPGNLGAMLRT 140

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   DG+I     +   +  + + + G +  +P       ++ L+ +       I  +
Sbjct: 141 ADAVGVDGVIAADPVTDWGNPNVVRGSKGTVFSVPVAAAP-TSETLEWLRDNDIPLIATT 199

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D+         +  +A+ +G E  GL  +    ATS   + M G + +LNV+ +AA+ L
Sbjct: 200 PDTDVMHTDIDLSGPVAVAVGTEKYGLTDEMLGAATSRVRIPMVGQVNSLNVATSAAIVL 259

Query: 274 YITQNHFA 281
           Y       
Sbjct: 260 YEAMRQRG 267


>gi|57505789|ref|ZP_00371714.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
           upsaliensis RM3195]
 gi|57015819|gb|EAL52608.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter
           upsaliensis RM3195]
          Length = 229

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    +  +       F +K +  ++   +  + 
Sbjct: 1   MIVYGKQVFFYILQKHKEMINELYLAKECD-KATFSLIAKAGFKIKKLDFKSAQALA-RG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  ++           ++ S+ +++L  ++D  N+GAI+R+A A   DG++   + 
Sbjct: 59  GNHQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNMGAIIRTAYALGVDGLLFIGKN 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              ES  + +S+SGA   +P    ++   AL ++    F+  G     ++         K
Sbjct: 119 LAQES--IVRSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             LI+G+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAILC 221


>gi|148273189|ref|YP_001222750.1| putative rRNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831119|emb|CAN02071.1| putaive rRNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 266

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 111/265 (41%), Gaps = 11/265 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++   + ++  ++ +     L G   VS AL      + +L AT  AL R   
Sbjct: 3   DNPRSPRVRGVAKLAKRDARADTGLFLLEGPQAVSEALAFRPDLVLELFATPTALDRYPD 62

Query: 84  DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDH 140
            A         V+ V    I  +       QG+        +     +  + +L+ +L+ 
Sbjct: 63  LARAVREAGVEVEFVTEDVIASMADT-VTPQGVVGVCRQFPTSLKQILGDDPRLIAILEE 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G I+R+A A   D +I T R     +  + ++ +G+L H+P   +  L   L+
Sbjct: 122 VRDPGNAGTIIRAADAAGADAVILTGRSVDLYNPKVVRATTGSLFHLPVAIMPELDAVLE 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMP 257
           ++ + G Q +         L +          A + G E +GL+ +    A     + + 
Sbjct: 182 RVKAAGLQVLAADVKGDDLLAERTSGGLAWPTAWLFGNEARGLQDEHLALADRAVVVPIY 241

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G  +++N++ AA+V LY +   FA+
Sbjct: 242 GQAESMNLATAASVCLYESA--FAQ 264


>gi|78186184|ref|YP_374227.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
 gi|78166086|gb|ABB23184.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
          Length = 265

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 103/249 (41%), Gaps = 9/249 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLP 88
           K++    Q+ ++  +       G+ TV   L     +  +  L+ T   LA     +   
Sbjct: 15  KRIARLQQR-KYRDREGLFIAEGLRTVRELLGQMAGADMLDCLICTAEGLAFFPESSIYS 73

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                        +++ G  +    L +   P    P         LL+ LD V DP N 
Sbjct: 74  GSL--FLASEDDFNRVAGTSSPQGVLGVFRQPVFPLPYERPYSGRALLVALDEVQDPGNA 131

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+A     DG++         +A   +S++G+L  +P+ R  +L  AL+++   GF
Sbjct: 132 GTILRTAAWLGADGLLAGPGTVDLYNAKTVRSSAGSLLGMPHTRAGDLPAALRQLQKAGF 191

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM---PGIIKALN 264
           + I  S + +         ++  L++G E  G+ P+ +  A  +  +     P  +++LN
Sbjct: 192 KVICSSLEGEDFRSGGAWPERTVLVVGNEANGVGPEVRVLADRLVKIPHGRGPARVESLN 251

Query: 265 VSNAAAVAL 273
            + +AA+ +
Sbjct: 252 AAVSAAILM 260


>gi|332199288|gb|EGJ13366.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA41317]
 gi|332199985|gb|EGJ14059.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA47901]
          Length = 212

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 12/218 (5%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++ A +N   +L   A  P       +    +  +   +   QG+   
Sbjct: 3   EEAVQAGV-TIEKIFALENYRNQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    
Sbjct: 55  VQKEEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAE 236
           +S  G+  H+P  R+++    L +        +  +        +E+ + +   L++G E
Sbjct: 113 RSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNE 171

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 172 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209


>gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
 gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Sphingomonas sp. S17]
          Length = 270

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 97/257 (37%), Gaps = 11/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARL 81
           ++   K ++    K RH  Q       G+  ++ A            A  +A      +L
Sbjct: 9   SNPLIKWVRDLRDK-RHRKQARQFLAEGLRILTEAKETGRLPTLLFFAKPSADHPLVRQL 67

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLD 139
                L     ++T  P  + K+ GK+   Q +       L  TLD +  S   + +V +
Sbjct: 68  VRAVELAGGEAIET-TPDILSKLSGKD-NPQAVV-GVFEELGTTLDMLDRSSSGIWLVAE 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ILR+  A    G+I         S    +++ GAL  +P ++ +     L
Sbjct: 125 RLRDPGNLGTILRTGDAVGAGGLILVGECVDPFSVEAVRASMGALFTVPIVK-TEWQPFL 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +     Q +GLS D++             L+ G E +G+          +  + M G 
Sbjct: 184 DWLRQGPGQLVGLSLDTETDYRSADYTAPTFLLTGNEAQGMPADYAAACDVLVKIPMLGK 243

Query: 260 IKALNVSNAAAVALYIT 276
             +LN + A AV  Y  
Sbjct: 244 ADSLNAAVATAVMAYEV 260


>gi|308370136|ref|ZP_07420416.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308370524|ref|ZP_07421873.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308371788|ref|ZP_07426239.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308374122|ref|ZP_07434956.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308375279|ref|ZP_07443391.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308376535|ref|ZP_07439209.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308377535|ref|ZP_07479580.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308325225|gb|EFP14076.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308331651|gb|EFP20502.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308335372|gb|EFP24223.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308342913|gb|EFP31764.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308346741|gb|EFP35592.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308350655|gb|EFP39506.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308355315|gb|EFP44166.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
          Length = 257

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 98/250 (39%), Gaps = 6/250 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M S +++    +    +   GV  V   L +    +  L  T   LA L  D       P
Sbjct: 1   MNSIDRRPDLPTGKALVIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-GVGAP 58

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
                   + +++G       LA             V  ++ + VL+ VND  N+G+I R
Sbjct: 59  YYRASADVMARVIGFHLNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A   S D ++     +        + + G    +PY R ++    L  +   GF+ + +
Sbjct: 119 NAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAM 178

Query: 213 SSDSKKP-LEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +       L + I    +++IAL++GAEG GL       +     + M     +LNV+ A
Sbjct: 179 TPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATA 238

Query: 269 AAVALYITQN 278
           AA+A Y    
Sbjct: 239 AALAFYERTR 248


>gi|83764572|dbj|BAE54716.1| unnamed protein product [Aspergillus oryzae]
          Length = 495

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 129/351 (36%), Gaps = 84/351 (23%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH------TSQPENLFLYGVHTVSA 59
           ++ S +    + S  A+  ++HR  +++    +++         + P + F+YG   V A
Sbjct: 127 REDSNRPQDKRHSRRAEPTKHHRATERVPERVKENVQVPDAIPYTTPASEFIYGTSAVEA 186

Query: 60  ALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVKTVP---PQTIDKIVGKEAV 110
           AL    R +++L   + +   L           L     VK       + +DK+      
Sbjct: 187 ALRCSRRHMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAFGGWDRLLDKMSA-GRP 245

Query: 111 HQGLALETAPLLSPTL----------------------------------------DAVR 130
           H G  LE +PL    +                                        D   
Sbjct: 246 HNGCVLEASPLPRLPVRGLKSVPSIKEEDFGVELGAQSREEALVNSTNDKLKIHHWDQRT 305

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              ++++LD + DP N+GAI+RSA     D II   R S   S V  K+++GA E++  +
Sbjct: 306 RYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTLL 365

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----------------DKIALILG 234
            +SN  D +Q+  + G++     +        +  +                    +++G
Sbjct: 366 EVSNEVDFIQRSKANGWKFYAADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMG 425

Query: 235 AEGKGLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273
           +EG GL    +  A S+  +              P  + +LNVS AAA+ +
Sbjct: 426 SEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPSRVDSLNVSVAAALLM 476


>gi|237785055|ref|YP_002905760.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757967|gb|ACR17217.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 325

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 109/275 (39%), Gaps = 27/275 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +   +++         +   G+  V   + +    +  ++ T+  L  L  DA+L 
Sbjct: 29  DFRNLNHSDKRPDMPGGKGLVIAEGLLVVPRLIRS-RFPVRAIMGTEAKLHSLLDDADLA 87

Query: 89  H-----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT-------LDAVRNSQ--- 133
                   PV  V  + + +IVG + +H+GL      +  P+       LDA R+     
Sbjct: 88  ATLAQANIPVWCVSREVMAEIVGFD-MHRGLLASANRVDVPSISDVLDELDARRDRPDQP 146

Query: 134 ----LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                + VL+ V D  NIGA+ R+A     D +      +      + + + G +  +P+
Sbjct: 147 PVSGTIAVLEGVGDHENIGALFRNAAGLGVDAVFFGAGCADPLYRRVVRVSMGHVLRVPF 206

Query: 190 IRIS----NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPK 243
                        L ++   G++ + L+      +  E  +   + ALI+GAEG GL   
Sbjct: 207 AYFDGNRSTWQRGLSELQQRGYRCVALTPSDDAVMLPEALDGAQRAALIVGAEGPGLTEH 266

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +   A + M     +LNV+ AAA+  Y    
Sbjct: 267 AMRASDVRARIPMAPGTDSLNVATAAAMGFYERAR 301


>gi|72080967|ref|YP_288025.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|71914091|gb|AAZ54002.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 233

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 16/238 (6%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G ++++ A+ N    ++I+ L  T + +              VK V    +DK+V  
Sbjct: 4   YICGRNSLADAIKNGFIFKEIYLLKPTNDQIFLKQK---------VKIVSRDFLDKLVS- 53

Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
              HQG            +D +     +++++LDH+ D +N+G I+R+A  F    II  
Sbjct: 54  -LNHQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILP 112

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI 224
           K+ +   +    K +SG    + +I ++++  A+ K+    F         K   +++  
Sbjct: 113 KKRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQ 172

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            N   A+ILG E  G++  +   +     + + G + +LNV+ A  + L+  + +  K
Sbjct: 173 FNYPCAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230


>gi|329851903|ref|ZP_08266584.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328839752|gb|EGF89325.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 257

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 65/267 (24%), Positives = 110/267 (41%), Gaps = 19/267 (7%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIF 69
           +I ++ D    +L R +RD K         R  +  E LF+  G   +     +P     
Sbjct: 3   EIIAITDPSDVRL-RLYRDVKD--------RDLTGREGLFMAEGRVVIERLFVSPWCVCI 53

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
            +L T + L  L  D +     PV  V    +D++ G  A+H+G            L  V
Sbjct: 54  SVLTTPDRLKML--DISQAGDVPVYVVDQAIMDQVAGF-AIHRGYLALGRYSGPAGLGEV 110

Query: 130 RNSQLL--MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                +  + L  + +  N+G ++R+A AF  D ++              + + G +  +
Sbjct: 111 LKPGRVRVLALSTIANTDNMGGLMRNAAAFGVDAVLLDAACCDPLYRKAIRVSVGGVFQV 170

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           P+IR+ NL +AL    + G     LS      L+     ++ A + GAEG GL P+    
Sbjct: 171 PHIRVPNLVEALT---AHGVAPYALSPSGAVVLDDVAPAERSAFLFGAEGPGLAPEVMAA 227

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
            TS   + M G   +LNV+  + + LY
Sbjct: 228 CTS-VRIDMHGGFDSLNVATTSGIVLY 253


>gi|307720229|ref|YP_003891369.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306978322|gb|ADN08357.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 250

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 115/258 (44%), Gaps = 16/258 (6%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALAR 80
           ++ ++YK  ++F +K         + LYG + +   L + S +I +L        +   +
Sbjct: 2   KDSQEYKDKKAFFEKI--------ITLYGRNVIVEILQDKSIEIHKLHLADSNKPDGAVK 53

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--SQLLMVL 138
                       +       + +I       QG+A++        ++ ++      L+ L
Sbjct: 54  KILLLAKERDIEIVKHDKAALSRISKNAKQDQGVAIDIISKTYLHVNMLKELTKYRLIAL 113

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + +P N+G I+RS  A + DGII  K+ S   S ++ K+++G L  +P    + L + 
Sbjct: 114 DGIQNPQNLGMIIRSCAAGNIDGIILPKKNSAKISPLVVKASAGTLFKLPIYFCNTLQEV 173

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L +      +   LSS +K  +    +++K   +LG E +G+  +  +   +   + M  
Sbjct: 174 LTEQQEA--KIYTLSSYAKTTIYDIQESEKTIYVLGNENEGVSHEVAKLCNNSVSIPMNR 231

Query: 259 IIKALNVSNAAAVALYIT 276
            +++LNV+  A++  ++T
Sbjct: 232 GVESLNVAVTASLIAFMT 249


>gi|172041241|ref|YP_001800955.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852545|emb|CAQ05521.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 286

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 110/270 (40%), Gaps = 23/270 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DA 85
           D++ + S + +         + + G   V   L +    +  ++  +  L+ L      A
Sbjct: 18  DFRDLNSSDSRPDLPGGKGLVIVEG-SLVVPRLLSSGYPVRSVVGFEGKLSVLQDVTCSA 76

Query: 86  NLPHPFPV-KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DAVRNSQLLMVLD 139
             P   PV   V  + + ++ G + +H+GL      +   T+     D      ++ +L+
Sbjct: 77  AQPAGGPVVYQVSREVLREVAGFD-MHRGLVAAADRIPERTVPEVLADIPAGPSVIAILE 135

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNL 195
            V D  NIGA+ R+A     D ++     +        + + G +  +P+ R     +N 
Sbjct: 136 GVGDHENIGALFRNAAGLGVDAVLFGAATADPLYRRAVRVSMGHVLRVPWARFSGKTTNW 195

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--------NDKIALILGAEGKGLRPKTQET 247
              L  +   GFQ I ++ D++  L   +           +IA+++GAEG GL       
Sbjct: 196 QHGLDAVREAGFQIIAMTPDTELSLADAVLAVRREQGEGARIAIMVGAEGPGLTEHAMRA 255

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           A   A + M     +LNV+ AAA+  Y ++
Sbjct: 256 ADMRAKIPMMPGTDSLNVATAAAIGFYASR 285


>gi|291549718|emb|CBL25980.1| rRNA methylases [Ruminococcus torques L2-14]
          Length = 285

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 103/271 (38%), Gaps = 22/271 (8%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +  Y + Q  N   +   +           +  AL+     I  L+  K      +    
Sbjct: 18  YARYTEAQLLN---KDRPEDGLFIAESPKVIGRALDAGYIPISVLVEKKQMEENEETQEV 74

Query: 87  LPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           L         + T     + ++ G +     L       L            + +L+ V 
Sbjct: 75  LARFENTGTSIFTAEFAVLTQLTGFKLTRGMLCALKRRPLEDFRKLCEGKNRIAILEDVM 134

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-------- 194
           +P N+GAI RSA A   D ++ T   S       ++ + G +  IP+  I +        
Sbjct: 135 NPTNVGAIFRSAAAMHIDTVLLTSGCSNPLYRRASRVSMGTVFQIPWTFIQDDKERRCDR 194

Query: 195 ----LTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKIALILGAEGKGLRPKTQET 247
                  A++ + + G++T  L+  D    ++  Q +  +K+A+ILG EG GL  +T + 
Sbjct: 195 KDIWPVQAIENLKALGYKTAALALTDDSVSIDDPQLMSEEKLAVILGTEGDGLMQETIKA 254

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 + M   + +LNV+ A+AVA +  + 
Sbjct: 255 CDYTVKIPMSHGVDSLNVAAASAVAFWQLRK 285


>gi|315638089|ref|ZP_07893274.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481937|gb|EFU72556.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
          Length = 229

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    +  +       F +K +  ++   +  + 
Sbjct: 1   MIVYGKQVFFYILQKHKEMINELYLAKECD-KATFSLIAKAGFKIKKLDFKSAQALA-RG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  ++           ++ S+ +++L  ++D  NIGAI+R+A A   DG++   + 
Sbjct: 59  GNHQGFLMDIKEFDFVPFCELKKSEFIVMLCGISDVGNIGAIIRTAYALGVDGLLFIGKN 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              ES  + +S+SGA   +P    ++   AL ++    F+  G     ++         K
Sbjct: 119 LAQES--IVRSSSGAALDLPICLSNDALSALNELKQMEFKLYGADGKGREVHHLTFPKGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             LI+G+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLIMGSEGFGLSSKIIQKCDECVGIAMQNDFDSLNVSAAFAILC 221


>gi|332160630|ref|YP_004297207.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604499|emb|CBY25997.1| hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-]
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664860|gb|ADZ41504.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 368

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 88/252 (34%), Gaps = 16/252 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVLDHVNDPHNIGA 149
            + K  G E  H G+            +                 ++ L+ V +PHN+G 
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDGIVKDCVLALEDVGNPHNLGG 236

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+   F  +G++     +  ES    ++A G  EHI  I   +    L      G+  
Sbjct: 237 IMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTI 295

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +  SS     L +     K+ L+LG E  GL     +       +   G +++LNVS A 
Sbjct: 296 VTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGKVESLNVSVAT 355

Query: 270 AVAL--YITQNH 279
            + L  +  QN 
Sbjct: 356 GILLSEWWRQNR 367


>gi|256374649|ref|YP_003098309.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255918952|gb|ACU34463.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 283

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 9/238 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++ + + +++         +   GV  V   L +P   +  +L  +  +  L        
Sbjct: 41  FRDLSTADRRPDRPGGRGLVIAEGVVVVERLLASPY-PVRAVLGVRRRVEALGEL----- 94

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           P P        + ++VG     +G+         P+LD +   + L VL+ V D  N+GA
Sbjct: 95  PAPAYVASADVMARVVGFHLN-RGVLAAADRAPQPSLDELATGRRLAVLEGVGDHENLGA 153

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A A   DG++     S        + + G +  +P+  + +    L+ +   GF  
Sbjct: 154 LFRNAAALGIDGVVLGPGCSDPLYRRSVRVSMGHVLRVPFAAVDDWPGGLKLLQDKGFVV 213

Query: 210 IGLSSD-SKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             L+       L    ++  ++A++LG+EG GL  +    A     + M   + +LNV
Sbjct: 214 AALTPRVGSVELPDAGLRGRRVAVLLGSEGPGLTEEAIGAADVAVRIPMSPGVDSLNV 271


>gi|162418675|ref|YP_001607797.1| putative methyltransferase [Yersinia pestis Angola]
 gi|162351490|gb|ABX85438.1| RNA methyltransferase, TrmH family [Yersinia pestis Angola]
          Length = 388

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 141 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 200

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 201 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 259

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 260 AHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 318

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 319 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 378

Query: 274 -YITQN 278
            +  QN
Sbjct: 379 EWWRQN 384


>gi|320162047|ref|YP_004175272.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319995901|dbj|BAJ64672.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 265

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 102/276 (36%), Gaps = 19/276 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL +     +R          +  Q+     +       GV  V   +    + + 
Sbjct: 4   EKITSLHNPRIQSIR----------ALIQRREERRERGWFVAEGVRLVEEGVQAGWQAVM 53

Query: 70  QLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            L +   +A  +    A       V  VP   + +I   E   QG+    A  +    + 
Sbjct: 54  ALYSADLSARGQALLPALHAQGAEVFEVPASLLKQISDTE-TPQGILTVFARRVYSLPEP 112

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +     +++ D++ DP N+G +LRSA A     +  T     + S  + ++  GA   +P
Sbjct: 113 L---DFVVIADNLRDPGNLGTLLRSAAAAGAQTVWLTPGTVDAFSPKVLRAGMGAHFRLP 169

Query: 189 YIRISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +S   + ++       G       +++  P         +AL++G E +G   + + 
Sbjct: 170 VQEVS--LEWMRDFRHQHPGMHLYLAEAENGTPCWDTDLTQPLALVIGGEAEGASLEMRA 227

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  + MPG  ++LN + AA + L+       +
Sbjct: 228 LVDGNITIPMPGKSESLNAAVAAGILLFEVVRQRRQ 263


>gi|308182709|ref|YP_003926836.1| RNA methyltransferase [Helicobacter pylori PeCan4]
 gi|308064894|gb|ADO06786.1| RNA methyltransferase [Helicobacter pylori PeCan4]
          Length = 227

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVITHLLNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+       L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLARVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N+ D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVVPNMLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|312601582|gb|ADQ90837.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 233

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 16/238 (6%)

Query: 50  FLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           ++ G ++++ A+ N    ++I+ L  T + +              VK V    +DK+V  
Sbjct: 4   YICGRNSLADAIKNGFIFKEIYLLRPTNDQIFLKQK---------VKIVSRDFLDKLVS- 53

Query: 108 EAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
              HQG            +D +     +++++LDH+ D +N+G I+R+A  F    II  
Sbjct: 54  -LNHQGFVGVLENFKFFEIDTLVKDKPKIILILDHIQDQNNLGNIIRTANCFGIKHIILP 112

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI 224
           K+ +   +    K +SG    + +I ++++  A+ K+    F         K   +++  
Sbjct: 113 KKRAAKLNETTMKVSSGGFVGLKFILVNSIVSAINKLKEMDFWIYATDLKEKSRKIQEIQ 172

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            N   A+ILG E  G++  +   +     + + G + +LNV+ A  + L+  + +  K
Sbjct: 173 FNYPCAIILGNEATGIKKSSLNASDQTFFIPLEGTVNSLNVTVATGIILFFLKQNIKK 230


>gi|21957656|gb|AAM84502.1|AE013695_4 hypothetical protein y0920 [Yersinia pestis KIM 10]
 gi|45435370|gb|AAS60929.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 393

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 146 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 205

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 206 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 264

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 265 AHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 323

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 324 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 383

Query: 274 -YITQN 278
            +  QN
Sbjct: 384 EWWRQN 389


>gi|253990660|ref|YP_003042016.1| methyltransferase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782110|emb|CAQ85274.1| similar to putative trna/rrna methyltransferase yfif escherichia
           coli [Photorhabdus asymbiotica]
          Length = 338

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 102/248 (41%), Gaps = 15/248 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLPHPFPVKTVP 97
              + E   +YG +   A   N S  I +    ++   R    L W A     + V  V 
Sbjct: 93  RRQRMEETRIYGENACQAMFKNRSEAIVRAWFIESVTPRFRNALKWMAANRKAYHV--VD 150

Query: 98  PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
              + K+ G E  H G+           +   L        ++ L+ V +PHNIGAI+RS
Sbjct: 151 EAELTKVSGTE-HHGGVCFLIKKRSGLDVETYLKDAPVKDCVLALEDVGNPHNIGAIMRS 209

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   G++  +  +  ES    ++A G  EHI  I   +LT  L K    G+  +  S
Sbjct: 210 CAHFGVQGVVL-QDVALLESGAAIRTAEGGAEHIKGIDADSLTTTLNKFRKAGYTIVTTS 268

Query: 214 SD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S      L +    +K+ L+LG E  GL   T E       +   G++++LNVS A  + 
Sbjct: 269 SHKGSTNLAKAELPEKMVLVLGEERDGLSDSTWEYGDMSLFVGGTGLVESLNVSVATGIM 328

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 329 LAEWWRQN 336


>gi|124514779|gb|EAY56291.1| putative TRNA/rRNA methyltransferase (SpoU) [Leptospirillum
           rubarum]
          Length = 192

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 7/186 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGA 149
            VP  ++D++   + VHQG+     PL    L    +        L+ +D V DP N+GA
Sbjct: 3   FVPRASLDRMA-PDLVHQGVYASLLPLPLLDLGEFLDGKDPLPSPLVAVDGVQDPRNLGA 61

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +LR+  A    G++  KR     S V AK++SGAL  IP IR+ NL+ +L  +   G+  
Sbjct: 62  LLRTCDAAGVQGVLLPKRRVAPLSPVCAKTSSGALFTIPLIRVGNLSQSLMYLRKRGYGV 121

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             L+               + +++G E KG+     + +     L M G + +LN+S A 
Sbjct: 122 ASLALGGSTAYRD-PFPAPLVVVVGEEEKGVSRPVLQQSDWKVSLPMRGKVSSLNLSVAL 180

Query: 270 AVALYI 275
            + LY 
Sbjct: 181 GIFLYA 186


>gi|51595204|ref|YP_069395.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|51588486|emb|CAH20094.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 390

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 143 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 202

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 203 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 261

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 262 AHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 320

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 321 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 380

Query: 274 -YITQN 278
            +  QN
Sbjct: 381 EWWRQN 386


>gi|160892176|ref|ZP_02073179.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
 gi|156858654|gb|EDO52085.1| hypothetical protein BACUNI_04639 [Bacteroides uniformis ATCC 8492]
          Length = 265

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +  AL+     +  L   K+               P
Sbjct: 20  LTEAQLRNRLEPDKGLFIAESPKVIKVALDVGYEPLALLCEHKHIYGDAAEIIERCGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + + ++ G       L     P+     D  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTSGRELLAELTGYVLTRGVLCAMRRPVPKSMEDVCRGARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G +  +P+  +    D L ++   GF+T  +
Sbjct: 140 SAAALGMDAVLLTRNSCDPLNRRAVRVSMGTVFLVPWTWMDGPLDTLGEL---GFRTAAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D+   ++  +     ++A+++G EG GL  +    A  +  + M   + +LN
Sbjct: 197 ALTDNSISIDNPVLKTEPRLAIVMGTEGDGLSHEAIAGADYVVRIPMAHGVDSLN 251


>gi|108808751|ref|YP_652667.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|108810992|ref|YP_646759.1| putative methyltransferase [Yersinia pestis Nepal516]
 gi|145600164|ref|YP_001164240.1| putative methyltransferase [Yersinia pestis Pestoides F]
 gi|149364890|ref|ZP_01886925.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
 gi|165926567|ref|ZP_02222399.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936079|ref|ZP_02224649.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010984|ref|ZP_02231882.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213137|ref|ZP_02239172.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399004|ref|ZP_02304528.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421660|ref|ZP_02313413.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423225|ref|ZP_02314978.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469723|ref|ZP_02334427.1| predicted methyltransferase [Yersinia pestis FV-1]
 gi|170025557|ref|YP_001722062.1| putative methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|186894222|ref|YP_001871334.1| putative methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|218930294|ref|YP_002348169.1| putative methyltransferase [Yersinia pestis CO92]
 gi|229013132|ref|NP_668251.2| putative methyltransferase [Yersinia pestis KIM 10]
 gi|229220784|ref|NP_992052.2| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|229838881|ref|ZP_04459040.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896374|ref|ZP_04511543.1| predicted methyltransferase [Yersinia pestis Pestoides A]
 gi|229899450|ref|ZP_04514593.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901210|ref|ZP_04516332.1| predicted methyltransferase [Yersinia pestis Nepal516]
 gi|270489397|ref|ZP_06206471.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Yersinia pestis KIM D27]
 gi|294504983|ref|YP_003569045.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
 gi|108774640|gb|ABG17159.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516]
 gi|108780664|gb|ABG14722.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua]
 gi|115348905|emb|CAL21862.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92]
 gi|145211860|gb|ABP41267.1| tRNA/rRNA methyltransferase [Yersinia pestis Pestoides F]
 gi|149291303|gb|EDM41377.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CA88-4125]
 gi|165916224|gb|EDR34831.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921495|gb|EDR38692.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989984|gb|EDR42285.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205924|gb|EDR50404.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960579|gb|EDR56600.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051508|gb|EDR62916.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057395|gb|EDR67141.1| RNA methyltransferase, TrmH family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752091|gb|ACA69609.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           YPIII]
 gi|186697248|gb|ACC87877.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681139|gb|EEO77233.1| predicted methyltransferase [Yersinia pestis Nepal516]
 gi|229687852|gb|EEO79925.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695247|gb|EEO85294.1| predicted methyltransferase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700650|gb|EEO88680.1| predicted methyltransferase [Yersinia pestis Pestoides A]
 gi|262363048|gb|ACY59769.1| putative tRNA/rRNA methyltransferase [Yersinia pestis D106004]
 gi|270337901|gb|EFA48678.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Yersinia pestis KIM D27]
 gi|294355442|gb|ADE65783.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Z176003]
 gi|320016459|gb|ADW00031.1| putative methyltransferase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 388

 Score =  182 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 88/246 (35%), Gaps = 11/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 141 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 200

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILRSA 154
            + K  G E  H G+            +            ++ L+ V +PHN+G I+R+ 
Sbjct: 201 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTC 259

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS
Sbjct: 260 AHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSS 318

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL- 273
                L +     K+ L+LG E  GL     +       +   G +++LNVS A  + L 
Sbjct: 319 HKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLA 378

Query: 274 -YITQN 278
            +  QN
Sbjct: 379 EWWRQN 384


>gi|167761866|ref|ZP_02433993.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
           43183]
 gi|167700236|gb|EDS16815.1| hypothetical protein BACSTE_00209 [Bacteroides stercoris ATCC
           43183]
          Length = 270

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +S A++   + +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPTKGIFIAESPKVISVAIDAGYKPLALLCEQKHITGDAATIIGRSGDIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P      +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGTRELLATLTGYTLTRGVLCAMRRPTPLSLEEVCREARRIVVIDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T       +    + + G++  +P+   + L   + ++   GF+T  +
Sbjct: 140 SAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPW---TWLDAPIGRLSDLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D+  P++        K+A+I+G EG GL  +T   +  +  + M   + +LN
Sbjct: 197 ALTDNSIPIDNPALTAEPKLAIIMGTEGDGLSRETIAGSDYVVRIPMSHGVDSLN 251


>gi|324998026|ref|ZP_08119138.1| RNA methyltransferase [Pseudonocardia sp. P1]
          Length = 280

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 12/260 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R  R     +   +  R  +      + G   V  AL+     + +L  T  A  R   
Sbjct: 10  ERTPRVAAARKLLRRPGRDRA--GRFLVEGAQAVREALDACP--VHELFVTTAAAQRHPE 65

Query: 84  --DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDH 140
             ++       V TV  Q    +  +    QGL      L  P   A+  S   + V   
Sbjct: 66  LVESARERGARVLTVTDQAAAGL-SETVTPQGLVAVCDLLDVPLATALAGSPGFVTVCAG 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           ++DP N+G ++R A A  CD ++         +    ++++G++ H+P  R  +    + 
Sbjct: 125 ISDPGNVGTVVRVADAAGCDAVLLAGDTVDPHNGKAVRASTGSVFHLPLARDRDAQGVVA 184

Query: 201 KMHSWGFQTIGLSSDSKKPLE----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
              S G  T+      +  L       I    +A ILG+E  G  P     A     + +
Sbjct: 185 ACRSAGLTTLVADGRGELDLHAPEAAPILAGPVAWILGSEAHGPGPDVFAAADHRVRVPI 244

Query: 257 PGIIKALNVSNAAAVALYIT 276
            G  ++LN++ AAA+ LY T
Sbjct: 245 HGRAESLNLATAAAICLYAT 264


>gi|317013971|gb|ADU81407.1| RNA methyltransferase [Helicobacter pylori Gambia94/24]
          Length = 227

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VVYGKQVIMHILNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFARE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S        + +   K 
Sbjct: 122 FAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQ-AENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K       +  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDMVLSVKMRRDFDSLNVSVAAGILM 223


>gi|223043735|ref|ZP_03613778.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
 gi|222442832|gb|EEE48934.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
          Length = 246

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 13/227 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            + G+H +  A  +    I QL   +    R D D  + +      +  +  + + G   
Sbjct: 31  LIEGIHLIEEAYQSGIE-IKQLFVIE--PDRTDEDL-IDYANETYEINMKVAEALSGT-V 85

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
             QG             +A +    ++++D + DP N+G ++R+A A   D I+  K  +
Sbjct: 86  TPQGFFAVIEKPHYNDTEAQQ----VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTA 141

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                 + +++ G++ HIP + I  LT  + +         G + +     ++     + 
Sbjct: 142 DPYQDKVMRASQGSIFHIPIV-IKGLTTYINEFDG---PVYGTALEDAVSFKEIEAQSRF 197

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           AL+LG EG+G+  +  +  T    + + G  ++LNV+ A ++ LY  
Sbjct: 198 ALLLGNEGEGVNQELLQQTTQNLIIPIYGKAESLNVAIAGSILLYQL 244


>gi|222086838|ref|YP_002545372.1| RNA methylase protein [Agrobacterium radiobacter K84]
 gi|221724286|gb|ACM27442.1| RNA methylase protein [Agrobacterium radiobacter K84]
          Length = 276

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 18/272 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLF--LYGVHTVSAALNNPSRKI 68
           +I    D   A      RD ++     ++SR  ++   +   L G H             
Sbjct: 8   EITHPDDPRIA----EFRDIRERDLTGRESRFIAEGTVVLRLLAGAHA-----AGGDFVA 58

Query: 69  FQLLATKNALARLDWDA-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            ++L  +N  A L+      P   P+       +D IVG   +H+G+           +D
Sbjct: 59  EKVLLLRNRAAGLEEIITAFPPDVPIYVADGSVLDGIVGFH-LHRGVLALGRRTADTGMD 117

Query: 128 A----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           A    +    L++V   +++  NIG++ R+A AF  D ++  +           + + G+
Sbjct: 118 AFLGRLPKRPLVLVGCGISNHDNIGSMFRNAAAFGADAVLLDETCCDPLYRKALRVSVGS 177

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +PY R     D L  +   GF    LS   K  +      D IAL++G EG+GL  +
Sbjct: 178 VLTMPYRREFRDVDLLTALAERGFAIWSLSPRGKTDIRAVPPTDHIALVVGTEGEGLPQE 237

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              T      +     + +LNV+ A+ +AL+ 
Sbjct: 238 ILSTF-GSVRIPQAPGLDSLNVATASGIALFE 268


>gi|194467106|ref|ZP_03073093.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
 gi|194454142|gb|EDX43039.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri 100-23]
          Length = 290

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 22/274 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y ++            P          +  AL    R    LL  +  L R   D +   
Sbjct: 18  YMRLNEAQLFHAFEPNPGLFIAESPKVIERALRAGYRP-ASLLIEEKELERDLADLDHEM 76

Query: 90  PF---------PVKTVPPQTIDKIVGKE-AVHQGLALETAPLLSPTLDAV-----RNSQL 134
                      P+  V  + + ++ G    + +G       +  P+LD        +   
Sbjct: 77  AINQTRGLEQTPIYVVNSKLLRQLAGGGYNLLRGALAAMHRVERPSLDNFLATMPSDHPR 136

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193
           + +L+ V +P NIGAI RSA A   DG+I T   +       ++ A G +  +P+  +  
Sbjct: 137 IAILESVVNPTNIGAIFRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDA 196

Query: 194 --NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETA 248
               ++ +  +H +G++T  ++   +   ++       D++A+ILG+EG GLR +T   +
Sbjct: 197 KAWRSEGIDLLHRFGYKTAAMALRHNTVDIDDPQLAEADRLAIILGSEGPGLREETITQS 256

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M   + +LNV+ A+A+A +   N   K
Sbjct: 257 DFTIKIPMAAGVDSLNVAAASALAFWELGNRKVK 290


>gi|90021356|ref|YP_527183.1| von Willebrand factor, type A [Saccharophagus degradans 2-40]
 gi|89950956|gb|ABD80971.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
          Length = 256

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 8/232 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVG 106
           +YG   V   L + S +I +L LA  N  A +  D           V     Q + +I  
Sbjct: 21  VYGRKPVLEVLQDNSLEIHKLHLADSNKPAAILDDMVKLAKKRGIEVCYHDKQALSRISK 80

Query: 107 KEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                QG+A +            L + +    ++ LD V +P N+G I+RSA A   + I
Sbjct: 81  NSKQDQGVAADVIGKGFQSHQSFLSSNKKHYRILALDGVTNPQNVGMIIRSACASPINAI 140

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  ++       ++ K+++G L   P +R   L   L+     G   IGL +++   L +
Sbjct: 141 ILPEKGCAKLDPLVIKASTGTLFRAPILRCKTLASCLKAFAESGADIIGLDANAPHTLGE 200

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E        +LG E +GL    +        + M   +++LNV+  A++  +
Sbjct: 201 EPLTGAKVFVLGNETEGLSSDVRAICNKHVSIPMLNNVESLNVAVTASLIAF 252


>gi|85059886|ref|YP_455588.1| putative methyltransferase [Sodalis glossinidius str. 'morsitans']
 gi|84780406|dbj|BAE75183.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 367

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 98/248 (39%), Gaps = 12/248 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   N    I +    ++   R          +      V   
Sbjct: 121 RRQRAEETRVYGENACQALFRNRPDAIVRAWFEQSVTPRFRDALRWMAANRKAYHVVEYD 180

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153
            + K  G E  H G+            D      A +    ++ L+ V++PHN+GA+LRS
Sbjct: 181 ELAKASGTE-HHGGVCFLIKKRAGLDADGYLASAAAQQQDCVLALEQVSNPHNLGAMLRS 239

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F  + ++ +   +  +S    ++A G  EH+  I+  ++   LQ+    G+  + L+
Sbjct: 240 CAHFGVNSVMVSD-SALLDSGAAVRTAEGGAEHVKAIKCDDVLQDLQRFQRAGYTVVTLA 298

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +S   L       +  L+LG EG  L       A     ++  G + +LNVS +A + L
Sbjct: 299 GNSGTSLSTVKMPARTVLVLGEEGSALSEAVLSQADIAVTINGSGRVPSLNVSVSAGILL 358

Query: 274 --YITQNH 279
             +  QNH
Sbjct: 359 AEWWRQNH 366


>gi|261377823|ref|ZP_05982396.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
 gi|269146125|gb|EEZ72543.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
          Length = 261

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +Q    + +   Q     L GVH +   L +  + +   +    A    +   
Sbjct: 8   NNEQIRHLQRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYI--PEAKMPSEEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   + +V    + KI         LAL   PL       + +    +VLD V 
Sbjct: 66  KLTAVLPEDRIFSVSDGILKKISSLSCADDILALIDIPLGR----TLPDKGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  +  +   S  + ++  GA   +     ++L   L   
Sbjct: 122 DPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYSQADLEIWLAHY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E      A + G EG G+     E A     + M    ++
Sbjct: 182 EDRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLERADKCVRIPMNDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      A
Sbjct: 241 LNVAMAATICLFEQMRQRA 259


>gi|15611567|ref|NP_223218.1| hypothetical protein jhp0500 [Helicobacter pylori J99]
 gi|4155040|gb|AAD06078.1| putative [Helicobacter pylori J99]
          Length = 227

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVRNIGGIFRSAYCLGMDGVILDFARE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S        + +   K 
Sbjct: 122 FAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQ-AENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|326331232|ref|ZP_08197526.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
           Broad-1]
 gi|325951002|gb|EGD43048.1| putative 23S rRNA methyltransferase [Nocardioidaceae bacterium
           Broad-1]
          Length = 262

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 100/254 (39%), Gaps = 13/254 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAAL----NNPSRKIFQLLATKNALARLDWDAN 86
           K+++   ++S   ++       G   V  AL    ++ +  + ++ AT+   A  +  A 
Sbjct: 13  KEIRKLGRRS-VRAERGLFLADGPKAVEGALGTVLDSGASCVQEIFATE---AGAETYAA 68

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           L    PV  V  + +  +        G+      L  P  D      L+++   V DP N
Sbjct: 69  LLADSPVTLVDDRAMAGLSDS-VTPAGVVALCRFLDVPLADIA--GPLVVICADVRDPGN 125

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G ++R A A    G+I         +    +++ G+  H+P     +   A++   + G
Sbjct: 126 AGTVIRCADAAGASGVILAGDSVDLYNPKTIRASVGSAFHLPVAVERDPVAAVKAAKAAG 185

Query: 207 FQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +         L    ++     A ++G E  GL P+    A  +  + + G  ++LN
Sbjct: 186 LTVLAADMHGTADLFSADDLLARPTAWLMGNEAWGLPPELAAEADEIVSIPIFGKAESLN 245

Query: 265 VSNAAAVALYITQN 278
           +S AAA+ LY +  
Sbjct: 246 LSTAAALCLYASAR 259


>gi|297155855|gb|ADI05567.1| putative rRNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 272

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 9/240 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     + R           G   +  A          LL+ K      D   ++P 
Sbjct: 18  YTGLTDVELRRRREPAEGLFIAEGEKVIRRARQAGYEMRSMLLSAKWVDVMRDVIEDVP- 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             PV  V P   +++ G   VH+G     +  PL       +  ++ + +++ VND  NI
Sbjct: 77  -APVYAVSPDLAERVTGYH-VHRGALASMQRKPLPEAE-QLLEGARRVAIMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLETWPRGLEAVRHTGF 193

Query: 208 QTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + + L+ D K   ++    +  +++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 194 KILALTPDEKATSIDDAAPHRIERVALMLGAEGDGLSVQALMAADEWVRIPMAHGVDSLN 253


>gi|259507138|ref|ZP_05750038.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
 gi|259165275|gb|EEW49829.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
          Length = 278

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 108/262 (41%), Gaps = 13/262 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +   + +         +   G   V+  L      +  L+  +  L     +  + 
Sbjct: 19  DFRDLNRSDFRPDLPGGRGLVIAEGP-LVTGRLLESRFPVRALVGFRGKLDAFLAEHEV- 76

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147
              PV  V  + + ++ G + +H+GL      +  PT+   +  ++ ++VL+ V D  NI
Sbjct: 77  GDIPVYEVTREVLAEVAGFD-MHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENI 135

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR----ISNLTDALQKMH 203
           G++ R+A     D I+     +      + + + G +  +PY       +    +L ++ 
Sbjct: 136 GSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELA 195

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             GF  + L+ D +    ++      K+AL++GAEG GL           A + M     
Sbjct: 196 DAGFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTD 255

Query: 262 ALNVSNAAAVALYIT---QNHF 280
           +LN++ +AA+A Y     Q H 
Sbjct: 256 SLNLATSAAIAFYERDRSQRHL 277


>gi|154500974|ref|ZP_02039012.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
           29799]
 gi|150269998|gb|EDM97517.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
           29799]
          Length = 252

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 90/255 (35%), Gaps = 8/255 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +    +++   Q      +       G   +  AL   +  +  +LA +        
Sbjct: 6   SRQNPLMVRIKKLGQSRALRREEGVFVCEGPKLIEEALKWGA-CVETILAAEGK-PLPQG 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V    P ++ + V      QGL            D +   +  +VLD V D
Sbjct: 64  LTGESRQVEV----PDSLLRAVSSVETPQGLLAVCRNPGLTPPDKLTGGR-YLVLDGVQD 118

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I R+A AF  DG++     +   S    ++  GA   +P    ++L      + 
Sbjct: 119 PGNLGTIWRTADAFGADGLLLVNGCADPWSPKTIRATMGACFRLP-AWETDLETVRALLD 177

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    +        +++   + A+++G+EG+G+  +          + M    ++L
Sbjct: 178 GADIPLYATALREDTVDVRDVDLKRAAVVIGSEGRGISDEALALCRRTIKIPMRARCESL 237

Query: 264 NVSNAAAVALYITQN 278
           N + AA V L+    
Sbjct: 238 NAAMAAGVVLWEMCR 252


>gi|31544882|ref|NP_853460.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541729|gb|AAP57028.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930958|gb|ADC30897.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(high)]
          Length = 260

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 12/248 (4%)

Query: 36  FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           FN K ++  + E L L+G + V   L N   KI ++   K     L            + 
Sbjct: 9   FNNKHQNKHKKERLCLFGYNGVYEGLINN-LKIKKVYLHKEDHPLLKLIKQ--KGIEYEL 65

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPL-----LSPTLDAVRNSQ--LLMVLDHVNDPHNIG 148
              +  D        HQG   E          +   + ++N Q  +++VLD ++DP N G
Sbjct: 66  HTIKWFDNQYRDLPNHQGFVAEIDGSSLTISFNQFCEKIKNEQQGIVVVLDQIHDPGNFG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGF 207
            ILRS +A +  G+I  K    S +  + K++ GA  ++  I ++NL+ A++ +   +GF
Sbjct: 126 GILRSCLAANVLGVIFKKDNQVSINNTVIKTSLGACFYLNLIEVANLSYAIKDLQEKYGF 185

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVS 266
            +   +   +         +K  LI+G E KG+  +  + A     + M    I++LNVS
Sbjct: 186 WSYVSNLSDQAQDYNVDYANKSILIVGNEQKGVSSQLIKNADYQIKIPMYTDKIQSLNVS 245

Query: 267 NAAAVALY 274
            A  + L+
Sbjct: 246 VATGIMLF 253


>gi|139436965|ref|ZP_01771125.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
           25986]
 gi|133776612|gb|EBA40432.1| Hypothetical protein COLAER_00098 [Collinsella aerofaciens ATCC
           25986]
          Length = 304

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 103/273 (37%), Gaps = 21/273 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-- 87
           Y ++     +     Q           +  A+    + +  LL  +     +     L  
Sbjct: 21  YVRLTERELRCVLEPQKGIFIAESAKVIERAVRAGYQPLSFLLGERWLDQMMPLFERLVV 80

Query: 88  ---PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--------RNSQLLM 136
                P PV     + ++++ G       LA    P   P  + +             + 
Sbjct: 81  REGAGPVPVFVASMELMEQLTGFNVTRGALAAFRRPRQIPVDEFLDGVVEAAGERPVRVC 140

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A + DGI+ +           A+ + G +  +P+ RI +  
Sbjct: 141 VLEGIVDHTNVGAIFRSAAALNVDGILVSPTCCDPLYRRSARVSMGTVFQVPWTRIGSEA 200

Query: 197 -----DALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETA 248
                D L  +H  GF    ++  D    L+  +    D++A+ +G EG GL  KT    
Sbjct: 201 RVWPHDGLAVLHEAGFSCAAMALTDDSVSLDDPVLQEIDRLAIFMGTEGAGLGAKTIAGC 260

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M   + +LNV+ A+AVA +    H +
Sbjct: 261 DRAVRIPMAHGVDSLNVAAASAVAFWQLCPHVS 293


>gi|153950911|ref|YP_001402163.1| methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|152962406|gb|ABS49867.1| RNA methyltransferase, TrmH family [Yersinia pseudotuberculosis IP
           31758]
          Length = 395

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 90/248 (36%), Gaps = 15/248 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVP 97
              + E   +YG +   A   +    I +       T      L W A     + V  V 
Sbjct: 148 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFRDALKWMAANRKAYHV--VE 205

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAILR 152
              + K  G E  H G+            +            ++ L+ V +PHN+G I+R
Sbjct: 206 EDELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMR 264

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +   F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  
Sbjct: 265 TCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTT 323

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           SS     L +     K+ L+LG E  GL     +       +   G +++LNVS A  + 
Sbjct: 324 SSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGIL 383

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 384 LAEWWRQN 391


>gi|170781630|ref|YP_001709962.1| putative rRNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156198|emb|CAQ01340.1| putative rRNA methylase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 266

 Score =  182 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 111/265 (41%), Gaps = 11/265 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPEN--LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    +++   + ++  ++ +     L G   VS AL      + +L AT  AL R   
Sbjct: 3   DYPRSPRVRGVAKLAKRDARADTGLFLLEGPQAVSEALAFRPDLVQELFATPTALDRYPD 62

Query: 84  DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM-VLDH 140
            A         V+ V    I  +       QG+        +     + +  LL+ +L+ 
Sbjct: 63  LARAVRESGIEVEFVTEDVIASMADT-VTPQGVVGVCRQFPTSLKQILGDEPLLIAILEE 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G I+R+A A   D +I T R     +  + ++ +G+L H+P   +  L   L+
Sbjct: 122 VRDPGNAGTIIRAADAAGADAVILTGRSVDLYNPKVVRATTGSLFHLPVAIMPELDAVLE 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           ++ + G Q +         L +          A + G E +GL+ +    A     + + 
Sbjct: 182 RVRAAGLQVLAADVKGDDLLAERTSGGLAGPTAWLFGNEARGLQDEHLALADRAVVVPIY 241

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G  +++N++ AA+V LY +   FA+
Sbjct: 242 GQAESMNLATAASVCLYESA--FAQ 264


>gi|206900335|ref|YP_002251024.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206739438|gb|ACI18496.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 266

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 108/284 (38%), Gaps = 28/284 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I  +   H    R      KK+                 + G   +  A
Sbjct: 1   MKFISSPSNEVIKEVIKLHDKNKR------KKLNK-------------CLVEGWRLIQDA 41

Query: 61  LNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
                  I +L+ +K+    + +          +  V    ++KI   E    G+     
Sbjct: 42  -KENGISIEKLIISKSLWNKKREEILEKFSSCDLYIVEDNLMNKISLMETPP-GIMGVFP 99

Query: 120 PLLSPTLDAVRNSQLLMVL--DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             LSP  + ++N    +VL  D + DP N+G I+R A     D  I ++      +  + 
Sbjct: 100 LFLSPKWEILKNKDNKIVLYSDDIQDPGNLGTIIRVADGVGVDAFILSENTVDPYNYKVI 159

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++++G++  +P   IS+    ++    W  + +       K   +E   +   LILG E 
Sbjct: 160 RASTGSIFRVPI-WISDDKTFVEFFKDW--KIVIADPKGSKLYFEENFKESFVLILGNEA 216

Query: 238 KGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G++ +   +    +  + +   + +LNVS AA+V L+  Q   
Sbjct: 217 WGIKKEKYLDLNPILLRIPLRKGVDSLNVSVAASVFLFEAQRQR 260


>gi|222147334|ref|YP_002548291.1| rRNA methylase [Agrobacterium vitis S4]
 gi|221734324|gb|ACM35287.1| rRNA methylase [Agrobacterium vitis S4]
          Length = 294

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 98/260 (37%), Gaps = 10/260 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++ +QK +   +       G+  V  A+      +  L+ +K A  +   +  
Sbjct: 32  NPIVKDIKALSQK-KTRDETRTFLAEGLKLVIDAVELGW-SLRYLIYSKAAKGKPQVERI 89

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHV 141
                     V  V  + +  I  K+   Q +A           D ++   +  + LD V
Sbjct: 90  AARTVAHGGMVLEVSEKVMASITRKD-NPQMVAGVFDQRWKALKDVSLTEGETWVALDRV 148

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    G++     +   +    ++  G++  +P ++ + + D L  
Sbjct: 149 RDPGNLGTIIRTADAAGASGVMLIGDSTDPFAMETVRATMGSIFALPLVKTT-VADFLGW 207

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               G   +                   + +++G E  GL  +    A  +A +   G+ 
Sbjct: 208 KTKAGVSVVATHLAGAVDYRTVDYKRRPVVVLMGNEQSGLPEELASRADMLARIPQAGLA 267

Query: 261 KALNVSNAAAVALYITQNHF 280
            +LN++ A  V L+  + H 
Sbjct: 268 DSLNLAVATGVMLFEARRHL 287


>gi|51598770|ref|YP_072958.1| rRNA methylase [Borrelia garinii PBi]
 gi|51573341|gb|AAU07366.1| rRNA methylase [Borrelia garinii PBi]
          Length = 246

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 112/241 (46%), Gaps = 17/241 (7%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
           +++  ++ N     F+L  +K +   +            +  +    +DKI+ K   H+G
Sbjct: 7   NSIIESIKNNKG--FELYISKKSSKTKEIERLAKTQNIKIIKISINELDKIL-KSKDHRG 63

Query: 114 LALETA-----------PLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
            AL+                   L+  +  +   +++LD + DP N GAILR+A  FS D
Sbjct: 64  FALKLKLEKNKNGKTQTKDFENLLETFKKKEHAFILLLDEIEDPQNFGAILRTAEQFSID 123

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++TT++ S  ++  + +++SGA +++  I ++N+ + +  +   GF         +   
Sbjct: 124 LVVTTQKRSAKDNLTVLRTSSGASQYVKKITVTNINNTIYFLKKHGFWIYAGDIKGQDIN 183

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +I + KIALILG E KG+    +E +  +  +   G I +LNVS +  + ++  +   
Sbjct: 184 KIKINDKKIALILGNESKGVHKLIKENSDFLIRIPTSGKIDSLNVSVSTGILIFEIKRQL 243

Query: 281 A 281
            
Sbjct: 244 N 244


>gi|291405649|ref|XP_002719297.1| PREDICTED: mitochondrial rRNA methyltransferase 1 homolog
           [Oryctolagus cuniculus]
          Length = 346

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 23/218 (10%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQ------LLMV 137
           A      PV     Q +D +  +  VHQG+ +E +PL   P  + +          L +V
Sbjct: 94  AAEARGIPVLRPRRQKLDALC-RHQVHQGVCMEVSPLQPQPWTETMGAGPGADPQQLWLV 152

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+GA+LRSA     D +IT++R S   + V++K+++GA+E +      +L  
Sbjct: 153 LDGLQDPRNLGAVLRSAHFLGVDKVITSRRSSCPLTPVVSKASAGAMEVMDVFSTDDLAG 212

Query: 198 ALQKMHSWGFQTIG--------LSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQE 246
            LQ     G+   G         +  S+ P+      + +    L+LG EG GL  + Q 
Sbjct: 213 FLQARARQGWLVAGAVGPPGPETAQSSEVPVTSCLDFLWDRPTLLVLGNEGSGLSQEVQA 272

Query: 247 TATSMAHL-H---MPGIIKALNVSNAAAVALYITQNHF 280
           +   +  +     +P  +++LNVS AA + L+   +  
Sbjct: 273 SCRCLLTILPGRQLPPGLESLNVSVAAGILLHAICSQR 310


>gi|241202807|ref|YP_002973903.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856697|gb|ACS54364.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 286

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 100/282 (35%), Gaps = 22/282 (7%)

Query: 16  KDSHYAKLRR----------NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           KD H    RR           +   K +++   K +   +       G+  +  A+    
Sbjct: 3   KDFHDQGPRRVGQVKEVTSLANPIIKDIKALTNK-KSREESGTFLAEGLKLIIDAIELGW 61

Query: 66  RKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPL 121
             I  L+  K A  +   +            V  V  + I  I  ++     + +     
Sbjct: 62  -AIRTLVYAKAAKGKPLVEQMAAKTVASGGLVLEVSEKVIASITRRDNPQ--MVVGIFEQ 118

Query: 122 LSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
               L  +R  + +  + LD V DP N+G I+R+A A    GII     +   S    ++
Sbjct: 119 RWTPLKGIRLSDGETWVALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRA 178

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGK 238
             G++  +P  R +   + +    S G   +                   + L++G E  
Sbjct: 179 TMGSVFAVPVARAT-PEEFIAWRKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQS 237

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           GL  +    A ++A +   G   +LN++ A AV L+  + H 
Sbjct: 238 GLPEQLAREADALARIPQQGRADSLNLAVATAVMLFEARRHL 279


>gi|119716688|ref|YP_923653.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119537349|gb|ABL81966.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 237

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 88/238 (36%), Gaps = 8/238 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
            ++       G   V  AL   +  + +L AT  A  +    A+L   FP   V    + 
Sbjct: 2   RTERRLFLADGPKAVEGAL--AADVVVELFATPAAAEQY---ADLLGGFPAALVDDGAMA 56

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            +        GL      L    +   R S+LL +   V DP N G ++R A A   DG+
Sbjct: 57  GLSDS-VTPAGLVAVCRFLDDEPVVDARVSRLLAICADVRDPGNAGTVIRCADAVGGDGV 115

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           +         +    +++ G+L H+   +  +   A+    S GF  +         L  
Sbjct: 116 VLAGNSVDPYNPKTVRASVGSLFHVRIGQERHPATAVSHARSAGFTVLAADGAGDVDLFD 175

Query: 223 EI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    A + G E  GL  +    A     + + G  ++LN+S AAA+ LY +  
Sbjct: 176 ADELLAGPSAWLFGNEAWGLPEELAALADHRVRIPIYGRAESLNLSTAAALCLYASAR 233


>gi|327389138|gb|EGE87484.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Streptococcus pneumoniae GA04375]
          Length = 212

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++   +N   +L   A          V    +  +   +   QG+   
Sbjct: 3   EEAVQAGV-TIEKIFTLENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D  +     + L+ V DP N+G I+R+A A    G+I + + +   S    
Sbjct: 55  VQKEEVGQADLSQGK--FLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAE 236
           +S  G+  H+P  R+++    L +        +  +        +E+ + +   L++G E
Sbjct: 113 RSMQGSHFHLPIYRMTSQA-LLDETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNE 171

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+G+ P   E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 172 GQGISPLMAESADQLVHISMKGQAESLNVAVAAGILIF 209


>gi|229820795|ref|YP_002882321.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566708|gb|ACQ80559.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 267

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 96/240 (40%), Gaps = 4/240 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           +Y ++     ++R+  +           +  A+    R    L+A +      +     P
Sbjct: 16  EYTRLTDVRLRTRYEPEHGLYMAESSTVIRRAVAAGHRPRSFLMAPRWLADMTEVTTAFP 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       ++++ G       LA    P L    D +  ++ + VL+ V D  N+G
Sbjct: 76  EA-PVFVADEALLEQVTGFHLHRGALAAMHRPPLPAARDLLAGARRVAVLEDVVDHTNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ RSA     D ++ T R +        + + G +  +P+ RI      + ++   GF 
Sbjct: 135 AMFRSAAGLGVDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIEEWPAGMDELRGAGFT 194

Query: 209 TIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              L+         E+     +++AL+LG EG GL P T   A  +  + M G + +LNV
Sbjct: 195 VAALALADDAVTLDELASSPPERLALVLGTEGHGLAPTTVAAADVVVRIPMTGGVDSLNV 254


>gi|262276699|ref|ZP_06054495.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HIMB114]
 gi|262225137|gb|EEY75593.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
           HIMB114]
          Length = 233

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 11/229 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
            ++ G H+V +A+ N   +I Q+L     L  ++   +LP  F   VK +    I+KI+ 
Sbjct: 4   FWIAGKHSVISAVLNKHNEIHQIL-----LQNIEHKIDLPKEFHRIVKKIEKDEINKILD 58

Query: 107 K--EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
              +  HQG   +     S   + +   + L++LD + D  NIGAI+R+A AF+   II 
Sbjct: 59  NYPDISHQGFFAQIERNYSNNKEELFKEKNLIMLDGLTDQRNIGAIIRTASAFNIKQIII 118

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K+   + + +L K+ASG ++ I   + SN+ +  +++    +   G   +SK   ++ +
Sbjct: 119 NKKDIVTSNLLLNKTASGGMDLINIFQTSNIINLFKELKKKDYWFYGFDGNSKTIFKKNL 178

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV--SNAAAV 271
            ++K   I G+EGKGLR   ++    +  +++   + +LNV  S A+A+
Sbjct: 179 LSEKNVFIFGSEGKGLREIIKKNCDHLVRININNKVDSLNVSASVASAL 227


>gi|301776018|ref|XP_002923430.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Ailuropoda
           melanoleuca]
          Length = 360

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 23/212 (10%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMV 137
           A      PV     Q +D +   + VHQG+ +E +PL       V  ++       L +V
Sbjct: 98  AAEARDIPVLRPRRQKLDALCRSQ-VHQGVCMEVSPLKPRPWTEVGEARPGDDPQQLWLV 156

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + DP N+GA+LRSA     D IIT+ R S   + V++K+++GA+E +      +L  
Sbjct: 157 LERIQDPRNLGALLRSAHFLGVDKIITSGRNSCPLTPVVSKASAGAMEVMDVFSTDDLAG 216

Query: 198 ALQKMHSWGFQTIGL--------SSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQE 246
            LQ     G+   G         S  S+ P+    + + +    L+LG EG GL    Q 
Sbjct: 217 FLQAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQAVQA 276

Query: 247 TATSMAHL-H---MPGIIKALNVSNAAAVALY 274
           +   +  +     +P  +++LNVS AA + L+
Sbjct: 277 SCQLLLTILPGRQLPPGLESLNVSVAAGILLH 308


>gi|114331617|ref|YP_747839.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
 gi|114308631|gb|ABI59874.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
          Length = 278

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 100/273 (36%), Gaps = 13/273 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            +  +      R H  +KK+    + SR         L G+H + + L +   +I +LL 
Sbjct: 2   QITSNMRRITSREHPVFKKLFKLQRSSRQRRDDGLALLDGIHLLQSYLASG--RIPELLI 59

Query: 74  TKNALARLDWDANLPHPF-------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
              +  +      L               +     ++I   +     + L   P  + ++
Sbjct: 60  VSESGGQHAEINQLLGSIGKDFGRADCLMLSDALFNQISLVKTPVGIMTLVRIPRHTRSV 119

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D+  +S   + L+ + DP N+G+ILRSAVA        +   + S S    ++  GA   
Sbjct: 120 DSYEDS-FCIALEAIQDPGNLGSILRSAVAAGVKDAFLSSDCADSWSPKTLRAGMGAHFS 178

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +     S+L     + +      I  +      +        +    G EG G+  +  E
Sbjct: 179 LRIHEDSDLIQIACQFNGN---VIATALAGADNIYHTDLRGPVMFAFGNEGCGVSEELLE 235

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + MPG  ++LNV+ AAA+ L+     
Sbjct: 236 VVRERVAIPMPGCAESLNVAAAAAICLFEKIRQ 268


>gi|291295473|ref|YP_003506871.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
 gi|290470432|gb|ADD27851.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
          Length = 266

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 93/257 (36%), Gaps = 7/257 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDW 83
           +   K      ++ ++  +     + G   +  AL     ++ +    +      AR   
Sbjct: 8   NPRIKAAAELKER-KNRERTGTFLIEGAREIERAL-AAGLEVIEAYCGEPLSPEEARAVA 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
             +      V  +    + KI  +E     LA+   P  S       ++ LL+V   +  
Sbjct: 66  HLSRALGLEVHELSEAALKKISSREHPAGVLAVARMPRPSLAAFQPSSNALLLVSVGLEK 125

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LRSA A   D ++         S  + ++++G +  +P          L  + 
Sbjct: 126 PGNLGALLRSADAAGADAVLVAGG-VDLYSPQVIRNSTGVVFSLPTFAAPEQA-VLDWLL 183

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 +  +  + +          +A++LG E +GL     E A     + M G   +L
Sbjct: 184 QHNIPIVATTPHTHQTYWDVDLRGPVAIVLGTEHQGLSQTWLERAARKVRIPMQGQADSL 243

Query: 264 NVSNAAAVALYITQNHF 280
           NVS  AA+ LY      
Sbjct: 244 NVSVTAALMLYEAVRQR 260


>gi|317180325|dbj|BAJ58111.1| hypothetical protein HPF32_0529 [Helicobacter pylori F32]
          Length = 227

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLALPLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|292489188|ref|YP_003532075.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|291554622|emb|CBA22290.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
          Length = 344

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +     TV   
Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFLQSVTPRFREALKWMAANRKAYHTVDDA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+       +    S  L        ++ L+ + +PHN+G I+RS  
Sbjct: 161 ELQKASGTE-HHGGVCFLIKKRVGMPVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS 
Sbjct: 220 HFGAKGLLVDDA-SLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSH 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL       ++ L+LG E  GL   + +       +   G +++LNVS A  V L  
Sbjct: 279 QGVPLSSAELPARMVLVLGQERDGLSDSSFQQGDLSVSIGGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|47458982|ref|YP_015844.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458310|gb|AAT27633.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 230

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 108/229 (47%), Gaps = 11/229 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           L+L G +++  A+ N   +I ++      + + D+++ +     V+    QT++++V  +
Sbjct: 3   LYLSGKNSIREAIEN-KVEIKKIFL----INKKDYES-IYKDIIVEYTNLQTLNELV--K 54

Query: 109 AVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
             HQ +  E       +L+ +    +  +++LDH+ D  N G+ILRSA AF  + II   
Sbjct: 55  TNHQNIVAELKEFNYFSLENIIKDKADKVLILDHIQDSFNFGSILRSANAFGWNYIIIPS 114

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIK 225
           + S   + V  K +SG   ++  I+I +L  A+  +   GF   G   D     ++    
Sbjct: 115 KRSVEINDVALKVSSGGFYNVKIIKIDSLIVAINFLKEHGFWIYGSMLDENSFEIKNAPI 174

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           N  I LI+G E  GL      +      + M G +++LN + A  + L+
Sbjct: 175 NFPIGLIIGNEHSGLSKTMINSLDVKVKIMMSGTVQSLNAAVATGILLH 223


>gi|260556538|ref|ZP_05828756.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606]
 gi|260409797|gb|EEX03097.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 19606]
          Length = 258

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 17/259 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++   + +    + +   L G H   A L    +K+F L  T+ AL   D    
Sbjct: 11  NAKIKHLRGLIELNSARKKHQQTVLEGTHLCLAWLQQ-QKKLFSLFTTEQALEHPDLKKI 69

Query: 87  LP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           +     H F +  V  + +  + G       LA+   P  + T+D   +    ++L++V 
Sbjct: 70  IELHQGHVFIISEVLYKDLSTL-GNTLP--CLAIIDLPKTASTIDYSVD---TLILENVQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L K 
Sbjct: 124 DPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKF 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                     SS     L  +  +     ILG EG+G      + A     +  PG  ++
Sbjct: 184 ---DIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALDHA-QSVTIPQPGGQES 239

Query: 263 LNVSNAAAVALYI--TQNH 279
           LNV+ A ++  +    Q  
Sbjct: 240 LNVAIAGSICFFEMVRQRQ 258


>gi|108562956|ref|YP_627272.1| hypothetical protein HPAG1_0531 [Helicobacter pylori HPAG1]
 gi|107836729|gb|ABF84598.1| 23S rRNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 227

 Score =  182 bits (462), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVITHLLNSHKEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|15645178|ref|NP_207348.1| hypothetical protein HP0553 [Helicobacter pylori 26695]
 gi|2313669|gb|AAD07619.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 227

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVIMHLLNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  V+ +Q L+VL  + D  NIG I RSA      G+I      
Sbjct: 62  NHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMGGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQIENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|21220051|ref|NP_625830.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|256788841|ref|ZP_05527272.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289772734|ref|ZP_06532112.1| rRNA methylase [Streptomyces lividans TK24]
 gi|7106669|emb|CAB76071.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|289702933|gb|EFD70362.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 272

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 9/241 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A          LL+ K   A  D     P
Sbjct: 17  DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAGEAGYAMRSMLLSAKWVDAMRDIIDAAP 76

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              PV  V P   +++ G   VH+G     +  PL +     +  ++ ++V++ VND  N
Sbjct: 77  --APVYVVDPALAERVTGYH-VHRGALASMQRKPLDTAA-GLLTTARRVVVMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D I+ +   +        K + GA+  +PY R+      L  +   G
Sbjct: 133 IGAIFRSAAALGMDAILLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPAGLAAVGEAG 192

Query: 207 FQTIGLSSDS-KKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F  + L+ D   +PL+    +  D++AL+LGAEG GL  +    + +   + M   + +L
Sbjct: 193 FTLLALTPDERAEPLDAVAPHRMDRVALMLGAEGSGLTRRALAASDTWVRIPMSHGVDSL 252

Query: 264 N 264
           N
Sbjct: 253 N 253


>gi|308063657|gb|ADO05544.1| RNA methyltransferase [Helicobacter pylori Sat464]
          Length = 227

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|228476265|ref|ZP_04060967.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
 gi|228269668|gb|EEK11170.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
          Length = 246

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 96/235 (40%), Gaps = 17/235 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQ 99
              +     + G+H +  A  +    I QL   +     +RL   A   +   +K     
Sbjct: 23  ERDKTGLALIEGIHLIDEAFKSNI-MIKQLFVIEPERTDSRLLEYAKEAYEINMKVAES- 80

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
                +      QG               +  ++ +++LD + DP N+G ++R+A A   
Sbjct: 81  -----LSGTITPQGFFAVI----EKPKHDISKAKQVLLLDRIQDPGNLGTLIRTADAAGI 131

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++  K  + +    + +++ G++ HIP +  + L   +++         G + ++   
Sbjct: 132 DMVVMEKGTADAYQDKVMRASQGSVFHIPIV-TTELNKFIEQFDG---PVYGTALENAVS 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +     D  AL+LG EG+G+  +     +    + + G  ++LNV+ A ++ LY
Sbjct: 188 YKNIESQDIFALLLGNEGEGVNKELLAHTSQNLIIPIYGKAESLNVAIAGSILLY 242


>gi|228472473|ref|ZP_04057235.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228276158|gb|EEK14905.1| TrmH family tRNA/rRNA methyltransferase [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 264

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 106/257 (41%), Gaps = 6/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K + S ++KS+   + +     G   +S A+      I QL      L   + + 
Sbjct: 8   QNSLIKYLYSLSEKSKLRREHQEFLFEGKRELSLAIAAGYH-IKQLFFCPAILPAAEVER 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           +    +P+  +     +K+  + +    LA  +   L    L   + + LL++ +    P
Sbjct: 67  SFA-GYPLTEISLPVYEKLSYRSSTEGILALAQGKDLSLSALSFNKENPLLLIAEAPEKP 125

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+LR+A A   D +      +   +  + +S+ G L  +P    ++  + L  +  
Sbjct: 126 GNIGALLRTADAAGVDAVCIANPKTDMYNPNVIRSSVGTLFTVPIA-TASTEELLHFLAQ 184

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             F     +  +  P +      + A+ +G E  GL P   E ++    + M G I ++N
Sbjct: 185 EDFTLYCAALSASVPYDSVSYKGRTAIAVGTEDVGLSPLWLEASSQNIIIPMRGKIDSMN 244

Query: 265 VSNAAAVALYI--TQNH 279
           VS +AAV ++    Q H
Sbjct: 245 VSVSAAVLIFEAVRQRH 261


>gi|307702986|ref|ZP_07639933.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|307623379|gb|EFO02369.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
          Length = 212

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             A+      I ++ A ++   +L      P       V  + +  +   +   QG+   
Sbjct: 3   EEAVQAGV-TIEKIFALESYRDQL---VAFPQTV---WVSEEILRDLADTQ-TPQGIVAV 54

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                    D  +   L   L+ V DP N+G ++R+A A    G+I + + +   S    
Sbjct: 55  IQKEEVGLPDFRQGKYLF--LEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTL 112

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           +S  G+  H+P  R+  L   +++        +  + S   K   +    +   L++G E
Sbjct: 113 RSMQGSHFHLPIYRMP-LVSFVEEAKKSNLPILATTLSRDSKDYRELSSLENFVLVMGNE 171

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G+G+     E+A  + H+ M G  ++LNV+ AA + ++
Sbjct: 172 GQGISSVMAESADQLVHIGMKGRAESLNVAVAAGILMF 209


>gi|315503266|ref|YP_004082153.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315409885|gb|ADU08002.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 294

 Score =  181 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 95/240 (39%), Gaps = 9/240 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDK 103
                  G   V  AL      + +L  T  AL R    A        PV  V    +  
Sbjct: 39  AGRFLAEGPQAVREALARAG-TVVELFGTPAALDRYADLAAAAARADVPVSEVTDDALAA 97

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +  +    QGL      L  P   AV R  +L+ VL  + DP N G +LR+A A     +
Sbjct: 98  LT-ETVAPQGLVAVCRHLDVPLEQAVARGPRLVAVLVGIRDPGNAGTVLRTADAAGAGAV 156

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I         +    ++++G+L H+  +R ++   A++ + + G + +  +      L+ 
Sbjct: 157 IFAGEAVDPYNGKCVRASAGSLFHVDVVRAADPLAAVEALRAAGLEILATTGYGDSDLDD 216

Query: 223 EIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                      A + G+E  GL  +    A +   + + G  ++LN++ AAAV LY +  
Sbjct: 217 LADAGRLAAPTAWLFGSEAHGLPDELTGAADARVRVPLHGRAESLNLAAAAAVCLYSSAR 276


>gi|315586762|gb|ADU41143.1| RNA methyltransferase [Helicobacter pylori 35A]
          Length = 227

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLALPLKEVKKTQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|319898202|ref|YP_004158295.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
           clarridgeiae 73]
 gi|319402166|emb|CBI75692.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
           clarridgeiae 73]
          Length = 282

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 103/258 (39%), Gaps = 8/258 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +++ N+K ++ ++       G+  V  AL N    I  L+ +KN+L     + 
Sbjct: 16  SNPIIKDLKALNKK-KNRNREGIFTAEGLKLVIDAL-NLGWTIQTLIVSKNSLNNTIIEN 73

Query: 86  NLPHPF----PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              +       V     + ++ I  ++   + + +      S      R   + + LD V
Sbjct: 74  AAANTIANGGSVIKASQKVLESITHRDNPQKVVGIFKQQWHSIKTIIRRVDDVYIALDRV 133

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A    GI      +   S    ++  G++  IP  R  N +  L  
Sbjct: 134 RDPGNLGTIIRTADAVGAKGIFLIGETTDPFSLETVRATMGSIFSIPLYRC-NESAFLNW 192

Query: 202 MHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             ++    +G              KN  I L++G E KGL         ++A +   G  
Sbjct: 193 STNFKGMIVGTHLKGSVDYRAIDFKNGPIILLMGNEQKGLSDVLANHCNNLARIPQCGYA 252

Query: 261 KALNVSNAAAVALYITQN 278
            +LN++ A A+ LY  + 
Sbjct: 253 DSLNLAVATALMLYEIRR 270


>gi|257784646|ref|YP_003179863.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
 gi|257473153|gb|ACV51272.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
          Length = 280

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 10/260 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANL 87
           Y K+ +   ++R       +       V  AL +    +  L       A+ +L  +   
Sbjct: 24  YAKLTNNQLRNRLDPARALMICESPFVVETALLSGCVPLSFLTNASHLEAVQQLIQNYCS 83

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               P+  +    I+K+ G       +     P   P  + +  S+ + VL+ + D +N+
Sbjct: 84  VDDVPIFVLSDNQIEKLTGYRMTRGIICAMRRPQARPLEEILSTSKYIAVLEDLVDVNNV 143

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT---DALQKMHS 204
           GA+ RSA A + D +I T + + + S  + + + G + ++P+ R+   T   D ++K+ +
Sbjct: 144 GAVFRSAAALNVDAVILTAKCADNLSRRVLRVSMGTVLNVPWTRLDEETTSLDLIEKLKA 203

Query: 205 WGFQTIGLSS-DSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             F T  L+  DS  PL +++ K  K AL  G+EG GL  KT E       + M   + +
Sbjct: 204 HSFTTCALALTDSAVPLNKDLVKGKKAALFFGSEGYGLDEKTIEACDITTIIPMSHQVDS 263

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ ++AVA +     FA+
Sbjct: 264 LNVAASSAVAFWEL---FAR 280


>gi|291166497|gb|EFE28543.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896]
          Length = 266

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 95/252 (37%), Gaps = 9/252 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-- 83
           N+  +K   S N++ +   +     + G   V  A    +  I  +  + +   + D   
Sbjct: 11  NNAMFKLALSLNKQ-KFRKKHSLFLIEGTRAVLQA-KENNITIKYIFVSDDFRKKRDDVW 68

Query: 84  -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            + N         +      K+    A    + +   P         +    +++LD + 
Sbjct: 69  NEINCSMITEKYILDDNLFSKLSDTVASQGVIGMCEIPKYDAKSILSKEKSFILLLDQIQ 128

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N G I+R+++A+  D I  TK    S S  + +++ G    +P I      D +   
Sbjct: 129 DPGNFGTIIRTSLAYGIDAIFFTKGSVDSFSPKVTRASMGGNLCLPLIEA---EDGIDYF 185

Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             + +     S S+            K+ALILG EG G+      T+     + +   ++
Sbjct: 186 KKFRYTVYSASLSEKSVSYRDVNFESKVALILGNEGNGISADILNTSDYQIIIPIKEGME 245

Query: 262 ALNVSNAAAVAL 273
           +LNV  AA + +
Sbjct: 246 SLNVGVAAGILI 257


>gi|292900306|ref|YP_003539675.1| RNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200154|emb|CBJ47280.1| putative RNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|312173349|emb|CBX81604.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 344

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +     TV   
Sbjct: 101 RRQRMEETRVYGENACQALFQSRPESIVRAWFLQSVTPRFREALKWMAANRKAYHTVDDA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+       +    S  L        ++ L+ + +PHN+G I+RS  
Sbjct: 161 ELQKASGTE-HHGGVCFLIKKRVGMPVSEWLAQSGQKDCVVALEDIGNPHNLGGIMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     S  ES    ++A G  EH+  I   +    L      G+  +  SS 
Sbjct: 220 HFGAKGLLVDDA-SLLESGAAVRTAEGGAEHVQAISGESFAAGLDAFRQAGYTIVTTSSH 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL       ++ L+LG E  GL   + +       +   G +++LNVS A  V L  
Sbjct: 279 QGVPLSSAELPARMVLVLGQERDGLSDSSFQRGDLSVSIGGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|82702991|ref|YP_412557.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
 gi|82411056|gb|ABB75165.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
          Length = 279

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 26/276 (9%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA--ALNNPSRKIFQLLATKNALARL 81
            R++  +K++    + SR         L G+H V A  AL  P     +L+A+++     
Sbjct: 6   SRDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALGKPE----KLVASESGRENP 61

Query: 82  DWDANLPHPFPVKTVP--------------PQTIDKIVGKEAVHQGLALET---APLLSP 124
           +    L     V  V               P  + + V       GL       +P   P
Sbjct: 62  EIRFLLEKVTKVTQVTKGGGSHREAAAIVLPDLLFREVSTVKTATGLMAIVPIPSPEAIP 121

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                +     ++L+ + DP N+G+ILRSA A     +  +   + + S    ++A GA 
Sbjct: 122 LKKRGQAESFCVLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADAWSPKTLRAAMGAH 181

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +NL +  +     G + I    D+KK L Q   +  +A + G EG GL  + 
Sbjct: 182 FLVRIHERANLAEVARTF---GGKVIASILDAKKSLYQMRLSGPVAFVFGNEGAGLSDEL 238

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + A     + MPG  ++LN + AAAV  +      
Sbjct: 239 LQVAHERITIPMPGDAESLNAAAAAAVCFFERVRQM 274


>gi|295133533|ref|YP_003584209.1| rRNA methylase [Zunongwangia profunda SM-A87]
 gi|294981548|gb|ADF52013.1| putative rRNA methylase [Zunongwangia profunda SM-A87]
          Length = 268

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 103/260 (39%), Gaps = 6/260 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW-- 83
            ++  K +     KSR+  +     + G+     AL     K+ ++       +  ++  
Sbjct: 9   QNKRIKHLLQLQDKSRNRRKESQFVVEGLRETGLALQ-GGFKLLEVYFCPEFFSENEFKS 67

Query: 84  DANLPH-PFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHV 141
             +  H    +  +  +   K+  + +    +    +       L+   N+ L++V +  
Sbjct: 68  IPDFEHADAEIIEISSEVYQKLAYRTSTEGVITVFASKENALQKLNFSHNNPLILVAEAP 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A + D ++     +   +  + +S+ G +       I   ++ ++ 
Sbjct: 128 EKPGNIGALLRTADAANVDAVLIANPKTDLYNPNIIRSSVGCVFTNKIA-IGTTSEIIKF 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +          +  + +   +       A+++G E  GL  + +E AT    + M G I 
Sbjct: 187 LQHKNIAIYAAALQASEIYTKIDFTKASAIVVGTEATGLNQEWREAATQNIIIPMNGAID 246

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++NVS AA + ++  +   +
Sbjct: 247 SMNVSVAAGILIFEAKRQRS 266


>gi|167647515|ref|YP_001685178.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349945|gb|ABZ72680.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 268

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTV 96
           K R     + LF+  G   + A + +   ++  LL       +L      LP   PV  V
Sbjct: 22  KERDLVGRQGLFIAEGETVLRAFVRDAPERVLSLLIDGKRADKLGEVFDGLPDGVPVYVV 81

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILR 152
               +D I G   +H+G+    A     + DA+        +++VL  + +  N+G I R
Sbjct: 82  GQAVLDAIAGFH-LHRGVLAVGAKPQPLSADALLARAGERAIVLVLMGIANHDNLGGIFR 140

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  DG+I              + + GA   +P   ++   D +  +    FQ + L
Sbjct: 141 NAAAFGVDGVILDADCCDPFYRKAIRVSIGATLGVPTAWLAPGEDVVALLERHDFQALAL 200

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S  +   L +     + A++LGAEG GL P     A     + M G   +LNV+  + + 
Sbjct: 201 SPAADLTLARLDPPARAAVLLGAEGPGLSPAVMARA-RTVGIPMAGGFDSLNVATTSGIV 259

Query: 273 LYITQ 277
           L+  +
Sbjct: 260 LHHLR 264


>gi|37525241|ref|NP_928585.1| putative methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784668|emb|CAE13568.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 338

 Score =  181 bits (461), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 112/317 (35%), Gaps = 47/317 (14%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR----------------------- 41
             + + K  S K     + RR++    +    N++ R                       
Sbjct: 24  DSRNNNKRPSGKGRDQGQRRRDNERTSRSPRANERERSPWKTVSRPESDSVTPMHGGISG 83

Query: 42  ---------HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR----LDWDANLP 88
                       + E   +YG +   A   N S  I +    ++   R    L W A   
Sbjct: 84  KSQIDPEQLRRQRMEETRIYGENACQAMFKNRSEAIVRAWFVESVTPRFRNALKWMAANR 143

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDP 144
             + V  V    + K+ G E  H G+               L        ++ L+ V +P
Sbjct: 144 KAYHV--VDEAELTKVSGTE-HHGGVCFLIKKRNGLDAETYLKDAPVKDCVLALEDVGNP 200

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G I+RS   F   G+I  +  +  ES    ++A G  EHI  I   +L   L     
Sbjct: 201 HNLGGIMRSCAHFGVQGVIL-QDVALLESGAAIRTAEGGAEHIKGIDADSLVTTLNNFRK 259

Query: 205 WGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G+  +  SS      L +    +K+ L+LG E  GL     E       +   G++++L
Sbjct: 260 AGYTIVTTSSHKGSTALAKAELPEKMVLVLGQERDGLSDSAWEHGDMSLFVGGSGLVESL 319

Query: 264 NVSNAAAVAL--YITQN 278
           NVS A  + L  +  QN
Sbjct: 320 NVSVATGIMLAEWWRQN 336


>gi|116250180|ref|YP_766018.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254828|emb|CAK05902.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 271

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 94/261 (36%), Gaps = 12/261 (4%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K +   +       G+  V  A+      I  L+  K A  +   +  
Sbjct: 9   NPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGW-AIRTLVYAKAAKGKPLVEQM 66

Query: 87  LPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDH 140
                     V  V  + I  I  ++     + +         L  +R    +  + LD 
Sbjct: 67  AAKTVASGGLVLEVSEKVIASITRRDNPQ--MVVGIFEQRWRPLKGIRLSEGETWVALDR 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    GII     +   S    ++  G++  +P  R +   + + 
Sbjct: 125 VRDPGNLGTIIRTADAAGASGIILLGETTDPFSLETVRATMGSVFAVPLARAT-PEEFIA 183

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
              S G   +                   + L++G E  GL  +    A ++A +   G 
Sbjct: 184 WRKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAREADALARIPQQGR 243

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN++ A AV L+  + H 
Sbjct: 244 ADSLNLAVATAVMLFEARRHL 264


>gi|25027456|ref|NP_737510.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|23492738|dbj|BAC17710.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
          Length = 301

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 108/262 (41%), Gaps = 13/262 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +   + +         +   G   V+  L      +  L+  +  L     +  + 
Sbjct: 42  DFRDLNRSDFRPDLPGGRGLVIAEGP-LVTGRLLESRFPVRALVGFRGKLDAFLAEHEV- 99

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNI 147
              PV  V  + + ++ G + +H+GL      +  PT+   +  ++ ++VL+ V D  NI
Sbjct: 100 GDIPVYEVTREVLAEVAGFD-MHRGLLAAADRVEEPTVASVLDGARTVVVLEGVGDHENI 158

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR----ISNLTDALQKMH 203
           G++ R+A     D I+     +      + + + G +  +PY       +    +L ++ 
Sbjct: 159 GSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRLPYAHLAGTYTTWQRSLTELA 218

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             GF  + L+ D +    ++      K+AL++GAEG GL           A + M     
Sbjct: 219 DAGFHLVSLTPDPEAVHLEDALAGREKVALLVGAEGPGLTEHAMRATDVRARIPMAPGTD 278

Query: 262 ALNVSNAAAVALYIT---QNHF 280
           +LN++ +AA+A Y     Q H 
Sbjct: 279 SLNLATSAAIAFYERDRSQRHL 300


>gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300074293|gb|ADJ63692.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 263

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 107/260 (41%), Gaps = 9/260 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++  +K+++     S+   +     L GVH   A L +       ++A ++A    + 
Sbjct: 6   SKDNPLFKELKQLASSSQARRRAGQSLLDGVHLAQAWLQHRGAPQLCVVA-ESAQYHPEV 64

Query: 84  DANLPHPFPVK---TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              L     ++    V    +   V       GL L  A  ++    A+  S   ++LD 
Sbjct: 65  APILAQCEALQAQCLVLADKLYDAVSTVDNGVGLFLLVATPVASAPKALTESA--VLLDG 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G+ILRSA A     +  +     + S  + ++  GA   +  +  ++L     
Sbjct: 123 LQDPGNLGSILRSAAAAGVRQVFCSPGTVAAWSPKVLRAGMGAHFVLDIVEDADLVALCA 182

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                    +  SS + + +     +  +A +LG EG+G+    QE AT    +   G +
Sbjct: 183 ASR---IPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQEAATQEVVIPHLGQM 239

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ AAAV L+      
Sbjct: 240 ESLNVAAAAAVCLFEQLRQR 259


>gi|307721830|ref|YP_003892970.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979923|gb|ADN09958.1| RNA methyltransferase, TrmH family, group 3 [Sulfurimonas
           autotrophica DSM 16294]
          Length = 228

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +Y    +   +NN  +KI  L   K  L + ++   +   F +K +P +   K+  K 
Sbjct: 1   MLIYAKQPIYYLINNYPQKIKTLYLAKE-LDKKEYSRLMKMGFEIKRIPNEAAVKM-SKN 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           A HQG   E             N   ++VL  + D  NIGAI+RSA A   D II +   
Sbjct: 59  ANHQGFLAEVEDYKLHDYQTFLNKDFVVVLAGLTDVGNIGAIVRSAYALGVDAIIVSGIK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
             +   +L ++++GAL  +P    +N+ + L      GF + G         E +I   +
Sbjct: 119 HLNIEPLL-RTSTGALFDMPLAVENNIHNLLNDFKMSGFISYGADMGGVDIREAKIVKKR 177

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + L+LG EG+GL  +      ++  + M     +LNVS A A+ +
Sbjct: 178 V-LVLGNEGEGLTSRVSSKLDNIVSIKMAHDFDSLNVSVAGAILM 221


>gi|314923774|gb|EFS87605.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL001PA1]
 gi|314966212|gb|EFT10311.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA2]
 gi|315095102|gb|EFT67078.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL060PA1]
 gi|315104331|gb|EFT76307.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA2]
 gi|327328119|gb|EGE69888.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL103PA1]
          Length = 277

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 9/242 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++  N +    ++       G   +  A          LLA +      D    L 
Sbjct: 17  DYVSLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL- 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V     +++ G   VH+G           +   +  ++ L+V + + D  N+G
Sbjct: 76  -DVEVFVVSETLAEQVTGFH-VHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R A     DG++   R +        K++ G +  +P+ R+ +    L ++   GF 
Sbjct: 134 AIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDHGFT 193

Query: 209 TIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              ++         E   D      K+AL++G EG GL       A  +  + M G + +
Sbjct: 194 VAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQADVVVRIPMAGGVDS 253

Query: 263 LN 264
           LN
Sbjct: 254 LN 255


>gi|254514484|ref|ZP_05126545.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3]
 gi|219676727|gb|EED33092.1| trna/rrna methyltransferase [gamma proteobacterium NOR5-3]
          Length = 263

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 22/261 (8%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNA---LARLDWDANLPHPFPV 93
           +K     +   L +YG   V  ALN+       L LA+ N    + R   DA        
Sbjct: 5   RKPDRQERRRFLTVYGRKAVLEALNDRHMDCRILHLASSNRSGGVLREIQDAADARGLDC 64

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----------AVRNSQLLMVLDHVN 142
           +    + + +I       QG+AL+        LD                Q L+ LD V 
Sbjct: 65  REHSREELARISRNGRQDQGVALDVYCPAMRELDDYINDINDISGESGKPQRLLALDGVT 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P N+G ++RSA A   DG++   R +P+   ++ K+++G +   P +R ++L  A Q +
Sbjct: 125 NPQNMGMVIRSAAAAGIDGVLYADRGNPALGPLVIKASAGTVFRAPLLRCASLFKASQSL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSMAHLHMPG 258
              GF+   L +   + L         A     +LG E  G+  +          + M  
Sbjct: 185 CEQGFRLYRLQASGSRTLFD---GQPFAHRALFVLGGESDGISRELSALPGENLSIPMAN 241

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV+ + A+  Y+    
Sbjct: 242 GVESLNVAVSGALVAYVAATQ 262


>gi|207092282|ref|ZP_03240069.1| hypothetical protein HpylHP_04814 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 227

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S        + +   K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQ-AENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|317012366|gb|ADU82974.1| RNA methyltransferase [Helicobacter pylori Lithuania75]
          Length = 227

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVVMHILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S        + +   K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSNQ-AENLSLKKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|217033500|ref|ZP_03438929.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
 gi|216944025|gb|EEC23456.1| hypothetical protein HP9810_905g19 [Helicobacter pylori 98-10]
          Length = 227

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVLMRILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLALPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|314933335|ref|ZP_07840700.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
 gi|313653485|gb|EFS17242.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
          Length = 246

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 100/227 (44%), Gaps = 13/227 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            + G+H +  A  +    I QL   +    R D +A L +      +  +  + + G   
Sbjct: 31  LIEGIHLIEEAYQSGIE-ITQLFVIE--PDRTD-EALLDYANEAYEINMKVAEALSGT-V 85

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
             QG            ++A++    ++++D + DP N+G ++R+A A   D I+  K  +
Sbjct: 86  TPQGFFAVIEKPQYNEIEALQ----VLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTA 141

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                 + +++ G++ HIP + I +L   + +         G + ++    ++     + 
Sbjct: 142 DPYQDKVMRASQGSIFHIPVV-IKDLATYITEFEG---PVYGTALENAVSFKEIESQSQF 197

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           AL+LG EG+G+     +  T    + + G  ++LNV+ A ++ LY  
Sbjct: 198 ALLLGNEGEGVNKDLLQRTTKNLIIPIYGKAESLNVAIAGSILLYQL 244


>gi|294631997|ref|ZP_06710557.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
 gi|292835330|gb|EFF93679.1| tRNA/rRNA methyltransferase [Streptomyces sp. e14]
          Length = 290

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 6/262 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
             ++   +  ++++Q+         +     + GV  ++ A+++       L      L+
Sbjct: 3   VQRISTRNARFQQLQTLLGNRTKRGRAREFLVQGVRPITMAVDHGWTVRSLLYDADRPLS 62

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           R   D           + P+ + ++  K +   + LA+        +  AV +  L ++ 
Sbjct: 63  RWAEDLLRRTDAERVAMAPRLLAELSEKADGAAEVLAVVAMEPDDLSRIAVHDGFLGLLF 122

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D    P NIG+I+RSA AF  DG+I T   +        ++++G+   +P +R  +  + 
Sbjct: 123 DRPTQPGNIGSIVRSADAFGADGLIVTGHAADPYDPKSVRASTGSFFAVPVVRSPSHHEV 182

Query: 199 LQKM---HSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           ++ +    + G     +G   D +  + +      + L++G E  GL    ++    +  
Sbjct: 183 VEWLAKERAQGRPVAVVGTDEDGEADVSEFDLTQPVLLLIGNETAGLSAAWRDLCDHVVS 242

Query: 254 LHMPGIIKALNVSNAAAVALYI 275
           + M G   +LN SNAA+V LY 
Sbjct: 243 IPMTGSASSLNASNAASVVLYE 264


>gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 277

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 101/284 (35%), Gaps = 22/284 (7%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           KK E+I S          +++R  +   +     +   +     + G+    + + +  R
Sbjct: 2   KKLERITS----------KSNRLVRLAHAVVHMPKRAKKEGLFAVEGLRLAESIMQSEWR 51

Query: 67  KIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             F     +      A    +       PV  +  +   ++   +   QG+ L       
Sbjct: 52  IRFAFFTDRGGESLAAAQLVEKLCERRTPVYLISDELCAELSDTD-TPQGVLLIAERDPG 110

Query: 124 PTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             L             L +VLD V DP N+G ILR+AVA    GI+  +  +   +  + 
Sbjct: 111 TPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVV 170

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAE 236
           ++A G L ++   +     D LQ            + D   +           A++ G E
Sbjct: 171 RAAMGGLFYMNVAQGVEEKDFLQWAQERSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNE 230

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             G+       A    ++ M G +++LNVS AAAV LY      
Sbjct: 231 ANGVSSAILARA-RRVYVPMFGPVESLNVSAAAAVILYECVRQR 273


>gi|260547003|ref|ZP_05822742.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260096053|gb|EEW79930.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
          Length = 242

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 14/245 (5%)

Query: 45  QPENLFLYGVHTVSAAL--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTI 101
           + +     G   V   L  ++   +   LL  +N L  L +    LP   PV +VP   +
Sbjct: 3   RQQRFIAEGK-VVLNVLFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIM 61

Query: 102 DKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           D + G   VH+G+      ++ P L   L A+    L++VL  +++  N+G+I R+A AF
Sbjct: 62  DAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAF 120

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++  +           + + GA   +PY     + D    +   GF  + L+  + 
Sbjct: 121 EADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAP 180

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + + +    ++ AL+LG EG+GL  +  E     A + M     +LNV+ A+ +AL    
Sbjct: 181 RSIYEATICERQALLLGTEGEGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL---- 235

Query: 278 NHFAK 282
           + F+K
Sbjct: 236 SRFSK 240


>gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. SIP3-4]
 gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. SIP3-4]
          Length = 260

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 104/256 (40%), Gaps = 8/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K+++   + SR   +     L G H +   +         ++A   +   ++ 
Sbjct: 8   SRDNPVFKQLKKLAESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTNEVNG 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   P   V      ++        G+        +P L      + +++L+ + D
Sbjct: 68  LIQELADIPTLMVTTLMFAEL-SPVTTPTGILALV---DTPQLPLPETLEFVLMLEDIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G++LRSA A     +  ++  + + S    +   GA   +P +  S+L   L    
Sbjct: 124 PGNLGSMLRSAAAAGVQAVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDL---LALTG 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           ++  +T+      +  L ++     +A ++G EG GL  K Q  A+   H+ M G +++L
Sbjct: 181 NFPGETLATVMQGE-SLYEQDLRQPVAFLIGNEGAGLSLKLQAAASRKIHIPMQGQVESL 239

Query: 264 NVSNAAAVALYITQNH 279
           N + A ++ ++     
Sbjct: 240 NAAAATSICVFERLRQ 255


>gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 263

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 94/255 (36%), Gaps = 7/255 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           ++  K +++ + + +   +       G+  +  AL+     +  +    +    +   A 
Sbjct: 10  NQTVKDIRALHMR-KEREETGRFLAEGLKIIIDALDQGFAPLILVFGKSDDRHPMLERAI 68

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVN 142
              L     V  V  + ++KI  K+   Q +    A  +    D   NS  + + L+ + 
Sbjct: 69  RETLAVEGEVLEVTREILEKISRKD-NPQMVVAVFAQQVKSLADIDPNSNAVWVALEQIR 127

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    G+I         S    ++  G++  +P ++ +     L   
Sbjct: 128 DPGNLGTIIRTADAAGIGGVILIGDCVDPFSVETVRATMGSVFALPVVKCTR-EAFLADR 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W    +G    +              +++G E  GL P       +   + M G   +
Sbjct: 187 SRWTGSVVGTLLTATHNHRTADYRRPTLILMGTEQSGLTPDIAAACDTHVKIPMRGRADS 246

Query: 263 LNVSNAAAVALYITQ 277
           LN+S A  + +Y   
Sbjct: 247 LNLSVATGIMIYAAA 261


>gi|261838205|gb|ACX97971.1| 23S rRNA methyltransferase [Helicobacter pylori 51]
          Length = 227

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   V   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVVMRILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCAITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|283786196|ref|YP_003366061.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282949650|emb|CBG89269.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 345

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          ++       +    ++ L+++ +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTSVKQWVGNAQAQDCVLALENIANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ + L      G+  +  S D
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDSIVNVLDDFRQAGYTVVTTSGD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL      +K+ L+LG E  GL    ++       +   G +++LNVS    + L  
Sbjct: 279 RGKPLFATALPEKMVLVLGQEADGLPDAARDPDDLCVKIDGTGNVESLNVSVVTGILLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|254671869|emb|CBA04093.1| putative RNA methyltransferase [Neisseria meningitidis alpha275]
 gi|319410442|emb|CBY90802.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
           Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
           WUE 2594]
 gi|325128267|gb|EGC51152.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568]
          Length = 261

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 97/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +  +   +  +   +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPV-GVYIPEGKMPS-EEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   V +V    + KI         LAL    +  P   A+      +VLD V 
Sbjct: 66  RLRAVVPEGKVFSVSDGILKKISSLTCADDVLAL----IDIPDAGALPAGGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  +  +   S  + ++  GA   +     ++L   L   
Sbjct: 122 DPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYSQADLEIWLASY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 248

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 114/275 (41%), Gaps = 32/275 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ KI    +    K  R+                  +   + + G H +  A
Sbjct: 1   MEQITSAQNAKIKHA-NKLKKKKERD------------------KSGLVLVEGTHLIDEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-A 119
           + +    I QL   +     ++        + +     +  + + G     QG+      
Sbjct: 42  VKS-RLTIKQLFIVEPERFDIELIEAAEEQYQINF---KVAEALSGT-VTPQGIFAIIEK 96

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P +S  ++  +    +++LD + DP N+G ++R+A A + D I+ +   +      + ++
Sbjct: 97  PDVSKQVEVAKQ---VLLLDRIQDPGNLGTLIRTADAAALDLIVMSPGSADPFQDKVLRA 153

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + G++ H+P I   ++ + +Q          G + D+     +    +K  L+LG EG+G
Sbjct: 154 SQGSVFHLPIIS-QDIKEFVQDFDG---PVYGTALDNAINFNEVESQEKFGLLLGNEGQG 209

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + P+  E  T    + M G  ++LNV+ A ++ +Y
Sbjct: 210 VDPELLEYTTQRLTIPMYGEAESLNVAIAGSILIY 244


>gi|189024698|ref|YP_001935466.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|189020270|gb|ACD72992.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
          Length = 228

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 11/225 (4%)

Query: 63  NPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL----E 117
           +   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+      +
Sbjct: 8   SARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRK 66

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           + P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +           
Sbjct: 67  SQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAI 126

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+LG EG
Sbjct: 127 RVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEG 186

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +GL  +  E     A + M     +LNV+ A+ +AL    + F+K
Sbjct: 187 EGLPSRLLERL-ETARIPMSKTFDSLNVATASDIAL----SRFSK 226


>gi|158334661|ref|YP_001515833.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304902|gb|ABW26519.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 261

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 96/239 (40%), Gaps = 8/239 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DW 83
            +   K+M+   Q+ +H  Q   L L G H + +A          +  T    A+    W
Sbjct: 6   QNPLIKQMRKL-QQVKHRRQQGKLLLEGTHLLQSAWEQNW-SFEIVCYTDRWQAKYPQIW 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    ++ V P+ + +         G+    +   +P+L       L + L+ + D
Sbjct: 64  QQIQDRTTRLERVSPEVL-QATATTVHPDGVVAVISRPATPSLPI---QTLGLALETIQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R++VA   +G++  ++ +  ES  + ++++GA  H+P          LQ   
Sbjct: 120 PGNLGTLIRTSVATQVEGLLLNQQCADLESPKVLRASAGAWFHLPQRATDKFVTVLQTYK 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G Q I    D+     Q        +++G EG GL     + A    ++ +   +++
Sbjct: 180 QQGMQLIATVPDASHTFWQVDYRQPTLILIGNEGAGLSQPVLDLADHQVNIPIAPGVES 238


>gi|23465262|ref|NP_695865.1| tRNA/rRNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|23325895|gb|AAN24501.1| possible tRNA/rRNA methyltransferase [Bifidobacterium longum
           NCC2705]
          Length = 169

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 1/152 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + LD V DP N+GA++RSA AF  +G+I  +R S S +A   K ++GA  H+P  R
Sbjct: 14  RPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVSAGAAAHMPVAR 73

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + NLT AL+ +   G+  +GL     K + E   ++D + ++LG+EG GL    +ET  +
Sbjct: 74  VVNLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSGLGRLVRETCDA 133

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +A + +   +++LN S AA ++LY   N   K
Sbjct: 134 IAGIPISSSVESLNASVAAGISLYAVSNARRK 165


>gi|332969175|gb|EGK08207.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 302

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 8/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +      S+H  + +   L GVH +SA L+  +    Q+   ++     +  A
Sbjct: 50  QNNQLKHLAKLLSASKHRREHQQTVLEGVHLLSAYLDAGNTP-EQVYVPEHRAQSPEIAA 108

Query: 86  NLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            L       V  V    + KI      +  +AL   P  SP    +      +VL+ + D
Sbjct: 109 LLCRLPANRVHLVSHNALRKISSLADANDIMALIALPQPSP----LPEQGDCVVLERIQD 164

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GA+LRSA A     II +   + + +  + ++  GA   +      +LT    + H
Sbjct: 165 AGNVGAVLRSAAAAGIVHIILSDGCADAYAPKVLRAGMGAHFLLHIHERVDLTQWRSQYH 224

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                   LS  +   L         A I G EG G+ P+ Q  AT+   + M G  ++L
Sbjct: 225 DR-VLVTALSEHNNFSLYDLTLQQPSAWIFGNEGSGVSPQIQNIATANVKIPMLGATESL 283

Query: 264 NVSNAAAVALYITQNHFAK 282
           N++ AA V L+       K
Sbjct: 284 NIAQAATVCLFEQMRQRLK 302


>gi|296164543|ref|ZP_06847114.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900143|gb|EFG79578.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 265

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 7/242 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AA       +  +  T+ A  R           PV  V  +   
Sbjct: 23  RRRAGRFLAEGANLVEAA--AARGLVRDVFVTEAAERRYAALLG-AQRCPVHLVS-ERAA 78

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K +       GL        +   D +  S  L+ V   + +P N G ++R A A    G
Sbjct: 79  KALSDTVTPAGLVAVCDMPATQLADVLAGSPRLIAVAVEIGEPGNAGTVIRLAAAMGAHG 138

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I         +    ++++G++  IP +   ++  AL  +   G Q +  + D +K L+
Sbjct: 139 VILGGHSVDPYNGKCLRASTGSIFSIPVVTEPDVPAALDALRGAGLQVLATTVDGEKRLD 198

Query: 222 Q--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  ++     A + G E +GL       A     + M G  ++LNV++AAA+ LY +   
Sbjct: 199 ESADLLGRPTAWLFGPESRGLPSDVAGAADHRMRIPMSGGAESLNVASAAAICLYQSAQA 258

Query: 280 FA 281
             
Sbjct: 259 LG 260


>gi|296123594|ref|YP_003631372.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296015934|gb|ADG69173.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 285

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 32/258 (12%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
             + GV TV   L +       +L T+  +A   W   +P   PV  +P +   +++G  
Sbjct: 32  FIVEGVRTVERLLASKFET-ASILVTQEKVA--AWAGLIPPEIPVYIMPTEMASQLIGFH 88

Query: 109 AVHQGLALETAPLLSPTLDAVR--------------------------NSQLLMVLDHVN 142
            +H G+        + +L+ +                              LL+V  + +
Sbjct: 89  -LHVGVMACGLRRRTASLEQLLGLPEPPKDQRLATTTSIEKYHELTAFQKPLLIVCPNCD 147

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P N+GAI+R A AF   G++  K      S  + + + G +  +      +L   LQ++
Sbjct: 148 NPENLGAIIRIASAFRATGLLLGKACCDPFSRRVIRVSMGNIFGLTIRESRHLDHDLQRL 207

Query: 203 H-SWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +GF+T+G   S+S   L+   +  ++AL+LG E +GL  +  +    +  + MP  +
Sbjct: 208 KTEFGFETMGAILSESAVSLKNVQRPHRLALLLGNEAEGLTTEWMDHCNHLVTIPMPPDV 267

Query: 261 KALNVSNAAAVALYITQN 278
            +LNV+ AA + LY   N
Sbjct: 268 DSLNVAVAAGIFLYQLTN 285


>gi|300704216|ref|YP_003745819.1| tRNA/rRNA methyltransferase, spou like [Ralstonia solanacearum
           CFBP2957]
 gi|299071880|emb|CBJ43209.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum CFBP2957]
          Length = 263

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 103/259 (39%), Gaps = 10/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++   +     L G+H V+A L+       Q L ++  LA  + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTP-TQCLVSERHLAHPEV 64

Query: 84  DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              L    P  V  +      ++     V  G+ L             R     ++LD +
Sbjct: 65  APLLARVDPQHVILLADSLFAQLT---TVVNGIDLMALIDTPEGHLPHRIEHDCVILDGI 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          +
Sbjct: 122 QDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESMHAR 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +H      +  SS ++  +        +  + G EG G+  +     T+   +  PG ++
Sbjct: 182 LH---VPLLATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGME 237

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ AAA+ L+      
Sbjct: 238 SLNVAAAAAICLFEAVRQR 256


>gi|308061885|gb|ADO03773.1| RNA methyltransferase [Helicobacter pylori Cuz20]
          Length = 227

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVIMHILNSRPEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAVPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|15827732|ref|NP_301995.1| rRNA methyltransferase [Mycobacterium leprae TN]
 gi|221230209|ref|YP_002503625.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
 gi|13093283|emb|CAC31778.1| putative rRNA methyltransferase [Mycobacterium leprae]
 gi|219933316|emb|CAR71492.1| putative rRNA methyltransferase [Mycobacterium leprae Br4923]
          Length = 259

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 92/234 (39%), Gaps = 5/234 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
               G + V AA+ +    +  +  T+ A  R           PV  V  +    +    
Sbjct: 27  FLAEGPNLVEAAIVSG--LVRDVFVTEVAAQRHATVLATLK-CPVHPVSERAAKALSDTV 83

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                +A+   P          + QL++    +++P N G ++R A A     +I     
Sbjct: 84  TPTGLIAVCEMPTTRLATVLAGSPQLVVAAVEISEPGNAGTVIRIADAMGAAAVIFGGYT 143

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKN 226
               +    +S++G++  I  +  S+   A+ ++ + G Q +    D +  L++   +  
Sbjct: 144 VDPYNGKCLRSSAGSIFSITVVVASDAYAAVTELRAAGLQVLATMVDGETSLDEAKPLLG 203

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              A + G+E  GL  +  E A     + M G +++LNV+  AA+ LY +    
Sbjct: 204 KPTAWLFGSEPHGLSTEIAEAADYRVRIPMVGGVESLNVAATAAICLYQSSRAL 257


>gi|257057053|ref|YP_003134885.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256586925|gb|ACU98058.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 256

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 12/252 (4%)

Query: 40  SRHTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVK 94
            +  + P++ FL  YG   V  AL +P+  + +++           +   A      PV+
Sbjct: 3   DKQATSPKDRFLTVYGRKPVLEALRDPALDVDKVIMADTVRGPAIAEIQRAAEARGVPVR 62

Query: 95  TVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAI 150
                 +  + G     QG+  +  AP + P   A+        L+VLD +    N+G I
Sbjct: 63  RASAHRVKVLAGNGKQDQGVLADVVAPRMRPLAAALEGRTPPSPLLVLDGITTSANVGMI 122

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A A    G++  +R   +   ++ K+++G     P +R +   +A++ +   G+   
Sbjct: 123 LRTATAAGIPGVVVPRRGVAALDPLVVKASAGVAFRAPVLRCATAVEAVESLVEVGYTVY 182

Query: 211 GLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            L + +      L       ++A +LG E +G+     +       + MPG +++LNVS 
Sbjct: 183 ALGARADAESTSLFDTDVPSRVAFVLGGETEGVSAAVADLVAGWVSIPMPGDVESLNVSA 242

Query: 268 AAAVALYITQNH 279
           AAAV  +     
Sbjct: 243 AAAVVCFDLVRR 254


>gi|325202115|gb|ADY97569.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240149]
          Length = 261

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 97/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +  +   +  +   +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPV-GVYIPEGKMPS-EEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   V +V    + KI         LAL    +  P   A+      +VLD V 
Sbjct: 66  RLRAVVPEGKVFSVSDGILKKISSLTCADDVLAL----IDIPDAGALPAGGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++L   L + 
Sbjct: 122 DPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQADLEIWLARY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E      A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|313836782|gb|EFS74496.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA2]
 gi|314929810|gb|EFS93641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL044PA1]
 gi|314972239|gb|EFT16336.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA3]
 gi|328907668|gb|EGG27432.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08]
          Length = 279

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 9/242 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++    +     +       G   +  A          LLA +      D    L 
Sbjct: 17  DYVSLRDVTLRKSLEVEHGLFIAEGAKVIRRACEAGYLPRSFLLAPRWIDGLRDLFDGL- 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V     +++ G   VH+G           +   +  ++ L+V + + D  N+G
Sbjct: 76  -DVEVFVVSEALAEQVTGFH-VHRGALASMRRQTRWSAVDLMAARRLVVCEDIVDHTNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R A     DG++   R +        K++ G +  +P+ R+ +    L ++   GF 
Sbjct: 134 AIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDHGFT 193

Query: 209 TIGLS-SDSKKPLEQEIKN-----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              ++ SD    L++   +      KIAL++G EG GL       A  +  + M G + +
Sbjct: 194 VAAMAPSDGAVTLDEFSADLRQNPRKIALLMGTEGAGLSAHWISQADVVVRIPMAGGVDS 253

Query: 263 LN 264
           LN
Sbjct: 254 LN 255


>gi|300691589|ref|YP_003752584.1| tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum
           PSI07]
 gi|299078649|emb|CBJ51307.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum PSI07]
          Length = 259

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 10/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++   +     L G+H V+A L+       Q L ++  LA  + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTP-AQCLVSERHLAHPEV 64

Query: 84  DANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              L    P   V        ++     V  G+ L             R     ++LD +
Sbjct: 65  VPLLARLDPQHIVLLADSLFAQLT---TVVNGIDLMVLIDTPEGHLPHRIEHDCVILDGI 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          +
Sbjct: 122 QDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESVHAR 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +H      +  SS +++ +     +  +  +LG EG G+  +     T+   +  PG ++
Sbjct: 182 LH---VPLLATSSHARQAVFDVPLHKPVGWVLGNEGAGVSEQWLS-VTTPISIPQPGGME 237

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ AAA+ L+      
Sbjct: 238 SLNVAAAAAICLFEAVRQR 256


>gi|15608782|ref|NP_216160.1| 23S rRNA methyltransferase TsnR [Mycobacterium tuberculosis H37Rv]
 gi|148661440|ref|YP_001282963.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|167968402|ref|ZP_02550679.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|306775831|ref|ZP_07414168.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu001]
 gi|306971937|ref|ZP_07484598.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu010]
 gi|307079653|ref|ZP_07488823.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu011]
 gi|1838995|emb|CAB06638.1| Possible 23S rRNA methyltransferase tsnR [Mycobacterium
           tuberculosis H37Rv]
 gi|148505592|gb|ABQ73401.1| putative 23S rRNA methyltransferase TsnR [Mycobacterium
           tuberculosis H37Ra]
 gi|308215746|gb|EFO75145.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu001]
 gi|308358624|gb|EFP47475.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu010]
 gi|308362550|gb|EFP51401.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu011]
          Length = 260

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 7/243 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V+AAL      + ++  T+ A  R +      H   V  V  +   
Sbjct: 21  RRRAGRFLAEGPNLVAAALARG--LVREVFVTEVAARRHELLLA-AHEASVHLVT-ERAA 76

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K +       GL        +   D +  S  L+ V   + +P N G ++R A A     
Sbjct: 77  KALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAA 136

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R     +    ++++G++  IP +   ++  A+  + + G Q +  + D +  L+
Sbjct: 137 VILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALD 196

Query: 222 QEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +  A + G E  GL  +    A    H+ M G  ++LNV+ AAA+ LY +   
Sbjct: 197 DADRLLAEPTAWLFGPEAHGLSAEIAALADHRVHILMSGGAESLNVAAAAAICLYESARA 256

Query: 280 FAK 282
             +
Sbjct: 257 LGR 259


>gi|320011830|gb|ADW06680.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 274

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 99/245 (40%), Gaps = 11/245 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A +        LL+ K     +  +    
Sbjct: 17  DYTGLTDVELRRRREPAEGLFIAEGEKVIRRARDAGYEMRSMLLSAKWID--VMREVIEE 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVND 143
              PV  V P   +++ G   VH+G          P   A+ +      + + V + + D
Sbjct: 75  TTAPVYAVTPALAERVTGYH-VHRGALASMQRKPLPDAGALLSPGTGDVRRVAVFEDIVD 133

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GA  R+A A   D ++ T R +        K + G++ H+P+ R+++  + L  + 
Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLTSWPEDLALLR 193

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
             GF T  L  SD    L++ +    +K+AL+ G EG GL P+    A +   + M   +
Sbjct: 194 QAGFTTAALCLSDRSITLDELVARRYEKLALVFGTEGDGLTPRALAAADAHVRIPMDAGV 253

Query: 261 KALNV 265
            +LNV
Sbjct: 254 DSLNV 258


>gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 235

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 107/269 (39%), Gaps = 36/269 (13%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           KI SL++           D+ K  +   K ++  +   + + G H +  A          
Sbjct: 2   KITSLQN-----------DFVKHCTKLSKKKYRDEHNEVLIEGEHLIQEA---------- 40

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAV 129
                N    +     L     V+ +      K+       HQ  A+ + P        +
Sbjct: 41  -----NTAGIVKKTIGLTESDDVQ-ITEHIAQKLSNTISGSHQ-FAIISKPQR-----EL 88

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +   ++ D V DP N+G I+R+A +F  D +I ++      +  + +S  G++ HIP 
Sbjct: 89  KEADRYLICDGVQDPGNLGTIIRTAHSFGFDAVIVSETCVDEFNDKVIRSTQGSIFHIPV 148

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           IR+  L  A+ ++ +W                Q+IK   IA+++G+EG G+     +   
Sbjct: 149 IRMP-LDVAIAQIKAWNIPVYASYLGENTHNLQDIKTCPIAVVMGSEGSGVSDAVVDLCD 207

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +      ++LNV+ A+A+  Y  + 
Sbjct: 208 GTVKIE-TSQFESLNVAIASAIICYTLRK 235


>gi|225019250|ref|ZP_03708442.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
           DSM 5476]
 gi|224947881|gb|EEG29090.1| hypothetical protein CLOSTMETH_03203 [Clostridium methylpentosum
           DSM 5476]
          Length = 259

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 101/255 (39%), Gaps = 6/255 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K     +   +         L GV  ++ A+ +    + ++L T+N L + + 
Sbjct: 4   SRENETVKLFAKLSGSKKQRDASGLFCLEGVRLIADAVRSGV-TLEKILITENCLQKYNH 62

Query: 84  DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDH 140
           +    L     + T+  +   K+   ++  QG+      L      D +++    + L  
Sbjct: 63  ELAEMLAINGKMNTISGELAGKLSDVKS-PQGVFAIAKKLDKTLDTDTIKSGGCYLALCS 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
             DP NIG ++R+A A   DG++         S  + +S  G+L  + +    +L     
Sbjct: 122 TQDPGNIGTMIRTADALGIDGVLL-HNTCDIYSPKVVRSTMGSLFRMRFALCPDLLGLTA 180

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +++ G  T     +   P+ +   +    L +G EG GL             + M G  
Sbjct: 181 SLNACGVDTCAAVVEDALPVTRASFSGPRVLYIGNEGNGLPDSIAFACARRITIPMRGNA 240

Query: 261 KALNVSNAAAVALYI 275
           ++LN ++AAA+ ++ 
Sbjct: 241 ESLNAASAAAILMWE 255


>gi|325204176|gb|ADY99629.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240355]
          Length = 261

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 98/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +  +   +  +   +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGKPL-GVYIPEGKMPS-EEIR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   + +V    + KI         LAL   PL       + +    +VLD V 
Sbjct: 66  RLRAVVPEGRIFSVSDGILKKISSLSCADDILALIDIPLGG----TLPDKGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++L   L + 
Sbjct: 122 DPGNVGTVLRSAAAAGVGTVVLDRGCADAWSPKVLRAGMGAHFLSGIYPQADLEIWLARY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      A
Sbjct: 241 LNVAMAATICLFEQMRQRA 259


>gi|306843065|ref|ZP_07475688.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
 gi|306286744|gb|EFM58294.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
          Length = 203

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 10/205 (4%)

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMV 137
           +    LP   PV +VP   +D + G   VH+G+      ++ P L   L A+    L++V
Sbjct: 3   EQLRQLPLGVPVYSVPQAIMDAVAGFH-VHRGILAVGRRKSQPDLRDMLAALPQKSLVVV 61

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  +++  N+G+I R+A AF  D ++  +           + + GA   +PY     + D
Sbjct: 62  LCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLYRKAIRVSVGAALKVPYFHGGTIDD 121

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
               +   GF  + L+  + + + +    ++ AL+LG EG+GL  +  E     A + M 
Sbjct: 122 INAALAEAGFNLLALTPSAPRSIYEATICERQALLLGTEGEGLPSRLLERL-ETARIPMS 180

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
               +LNV+ A+ +AL    + F+K
Sbjct: 181 KTFDSLNVATASGIAL----SRFSK 201


>gi|311267819|ref|XP_003131753.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Sus
           scrofa]
          Length = 361

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 24/224 (10%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRN 131
             +   A L   A      PV     + +D +   + VHQG+ +E +PL   P  +A  +
Sbjct: 87  GLQGERAELLRVAE-ARDIPVLRPRRRKLDVLCRYQ-VHQGVCMEVSPLRPQPWAEAGES 144

Query: 132 SQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   L +VL+ + DP N+GA+LRSA     + +IT+++ S   + V++K+++GA+E
Sbjct: 145 RPGDDPQQLWLVLEGLQDPRNLGAVLRSAHFLGVEKVITSRKNSCPLTPVVSKASAGAME 204

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGL--------SSDSKKPLE---QEIKNDKIALILG 234
            +      +L   LQ     G+   G         S  S+ P+      + +    L+LG
Sbjct: 205 VMDVFSTDDLAGFLQAKARQGWLVAGTVGCPGPEISPSSEVPITSCLDFLWDQPTLLVLG 264

Query: 235 AEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVALY 274
            EG GL  + Q +   +  +     +P  +++LNVS AA + L+
Sbjct: 265 NEGSGLSREVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLH 308


>gi|210623621|ref|ZP_03293947.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
 gi|210153491|gb|EEA84497.1| hypothetical protein CLOHIR_01897 [Clostridium hiranonis DSM 13275]
          Length = 264

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 113/284 (39%), Gaps = 29/284 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+ K +EKI S K                      KS++ ++     + G   ++ A
Sbjct: 1   MVEITSKDNEKIKSTK-------------------LLLKSKNRNKESKFIIEGYRILTLA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
                  I  +   ++   + +    L         V     +    +V  E   QG+  
Sbjct: 42  FEQ-KDIIDYVFINEDFENKEEHRKFLKELEDANIKVYKTTNKNFKDMVDTENT-QGILA 99

Query: 117 ETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             +     TL+     + + ++VLD + DP N+G I+R+A A   D IIT K      + 
Sbjct: 100 VVS-YEKKTLEKNLTDDDKYIIVLDRIQDPGNMGTIIRTADAAGADAIITLKGCVDIYNP 158

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + +S  G++  +  I      + L  + S G + +    +++   +     +K+AL++G
Sbjct: 159 KVIRSTMGSIFSMNIIPAER-DEMLSTLKSKGIKIVSSWLNTENWYDTVDYGNKVALVIG 217

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E  G+     E +  +  + + G  ++LN + ++A+ +Y  + 
Sbjct: 218 NEANGIDDVIAENSDLLVKIPIYGSAESLNAAISSAILMYEIKK 261


>gi|34556873|ref|NP_906688.1| hypothetical protein WS0446 [Wolinella succinogenes DSM 1740]
 gi|34482588|emb|CAE09588.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 257

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L    + I  +   K     L  + +     P+  V P+    +  + 
Sbjct: 28  MIIYGKQIFLYVLRRHPKLIKSVYLGKEVEKDLFKEISRL-GIPLLRVDPKKAQAMA-RG 85

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  +E   +   +L  ++    L+VL  V+D  NIG I RSA     +G+I T   
Sbjct: 86  GNHQGFLMEIEAISPLSLGEIKRVDRLLVLHGVSDSGNIGGIFRSAYCLGMEGVILTNLS 145

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           S S  + + +++SGAL  +P+  + N  D + ++   GF   G + + + P  +   + +
Sbjct: 146 SFSIESAI-RTSSGALLELPFGIVKNPWDLINELRGAGFTLYGAALEGEIPNGKSFASKR 204

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL +G+EG+GL  K       +  + M     +LNV  AAA+ +
Sbjct: 205 -ALFMGSEGEGLPKKLLSKLDQLLKIEMERDFDSLNVGVAAAILM 248


>gi|17227671|ref|NP_484219.1| rRNA methylase [Nostoc sp. PCC 7120]
 gi|17135153|dbj|BAB77699.1| rRNA methylase [Nostoc sp. PCC 7120]
          Length = 273

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 102/280 (36%), Gaps = 17/280 (6%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I       + SL++S   ++R+ H            ++   +     L G H +  A   
Sbjct: 7   IQTSALAMLTSLQNSLVKQIRKLH-----------STKERHKQGLFLLEGTHLLEEACAM 55

Query: 64  PSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
               +  +  T    A     WD         + V  + +  I        G+       
Sbjct: 56  DY-PLEVVCCTPEWEANHTALWDDACSRCDRYEIVSEEVLQAIA-TTVQPDGVVATAKRS 113

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
              +   V  + +++ L+ + DP N+G I+R+A A    G++ ++     ++  + ++++
Sbjct: 114 EQQS--QVPFTGVVLALETIQDPGNLGTIIRTAAAAGASGLLLSQDSVDLDNPKVLRASA 171

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G    +      +L   +Q     G Q +     +K    +        ++LG EG GL 
Sbjct: 172 GQWFRLATAVSEDLKATVQLCQQAGMQVVATLPTAKLTYWEIDWRKPSLILLGNEGAGLS 231

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           P     A     + +   +++LNV+  +A+ LY  Q    
Sbjct: 232 PDLAAMADQEVKIPLSPGVESLNVAITSALMLYEVQRQLN 271


>gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
          Length = 273

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 110/287 (38%), Gaps = 32/287 (11%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I+  ++E++  +   H                   +++     +  F  G   V  AL 
Sbjct: 1   MITSVRNEQVKHIVSLH-------------------QTKGRKTSQQFFAEGRRFVGEALM 41

Query: 63  NPSRKIFQLLA--------TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
              R I ++           +  L  L  +A      P + V    + +I   E   QG+
Sbjct: 42  RSKR-IEKIFYCPAKGSTWEREKLEELILEAGKLR-IPAEEVSEDVMKRISATEE-PQGI 98

Query: 115 ALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                       D       +L++LD + DP N+G ILR+++A     ++ T+      +
Sbjct: 99  LALINQEEYSWDDIQIEPDTILLILDGIRDPGNLGTILRASLAAGVKNVVLTRGTVDYYN 158

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALI 232
             + +S+ GA+  +  ++     D            +  + + +    Q+  ++  +AL+
Sbjct: 159 PKVLRSSMGAVFSMCILQEIERPDIWAFCRQNHLNLVVSALEGQSVYRQKMDQSLPLALV 218

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +G+E  G+ P+  E +     + M   +++LN + AA + L+  +  
Sbjct: 219 IGSEANGVAPEFSEISPKKIMIPMQNNVESLNAALAAGILLFEIRRQ 265


>gi|262182925|ref|ZP_06042346.1| hypothetical protein CaurA7_02930 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 273

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 102/246 (41%), Gaps = 10/246 (4%)

Query: 41  RHTSQPENLFLYGVHT-VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +H  +    F++G        L      +  ++  +  L     + ++    PV  V   
Sbjct: 20  KHADKSGEGFVFGEGPLCVERLLASRFPVRCIIGFEGKLDTFLANHDV-GDIPVYQVTRA 78

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           T+ ++ G + +H+GL        + T+D  +  ++ L +++ V D  NIG++ R+A    
Sbjct: 79  TLGEVTGFD-MHRGLVAAADRAEAWTVDEVIEGARTLAIMEGVGDHENIGSLFRNAAGMD 137

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKMHSWGFQTIGLSS 214
            DGI+     +        + + G +  +P+ R           L+++   GF+ + L+ 
Sbjct: 138 VDGILLGSGAADPLYRRSVRVSMGHVLRLPWARFDGGFTTWQRGLEQLREKGFRLVSLTP 197

Query: 215 DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                   +      K+AL++GAEG GL           A + M     +LNV+ +AA+A
Sbjct: 198 HPDAVHIADALEGADKVALLVGAEGPGLTEHAMRATNVRARIPMAEGTDSLNVATSAAIA 257

Query: 273 LYITQN 278
            Y  Q 
Sbjct: 258 FYERQR 263


>gi|261839617|gb|ACX99382.1| 23S rRNA methyltransferase [Helicobacter pylori 52]
          Length = 227

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   ++  LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVITHLLNSHKEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RS+     DG+I      
Sbjct: 62  NHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSSYCLGMDGVILDFTKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K       +  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDMILSVKMRRDFDSLNVSVAAGILM 223


>gi|320539497|ref|ZP_08039166.1| putative methyltransferase [Serratia symbiotica str. Tucson]
 gi|320030622|gb|EFW12632.1| putative methyltransferase [Serratia symbiotica str. Tucson]
          Length = 360

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/246 (22%), Positives = 89/246 (36%), Gaps = 10/246 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 116 RRQRAEETRVYGENACQALFASRPDAIVRAWFIQSITPRFREALRWMAANRKTYHVVDEE 175

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+                 + L    ++ L+ V +PHN+GAI+RS  
Sbjct: 176 ELVKASGTE-HHGGVCFLIKKRQGLDAQTYLKNPLATDCVLALEEVGNPHNLGAIVRSCA 234

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  +G++     +  ES    ++A G  EHI  I   +    L      G+  +  SS 
Sbjct: 235 HFGVNGVLLQDP-AVLESGAAVRTAEGGAEHIKAINADDFLSVLDIFRQAGYTIVTTSSH 293

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
               L Q     KI L+L  E  GL     +       +   G + +LNVS A  + L  
Sbjct: 294 KGTALAQAKLPAKIVLVLRQERDGLSDSAWQQGDMSISIGGTGKVDSLNVSVATGILLAD 353

Query: 274 YITQNH 279
           +  QN 
Sbjct: 354 WWRQNQ 359


>gi|304387556|ref|ZP_07369745.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|304338443|gb|EFM04564.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
           13091]
          Length = 261

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 97/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +  +   +  +   +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGKPL-GVYIPEGKMPS-EEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   V +V    + KI         LAL    +  P   A+      +VLD V 
Sbjct: 66  RLRAVVPEDRVFSVSDGILKKISSLTCADDVLAL----IDIPDAGALPAGGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  +  +   S  + ++  GA   +     ++L   L   
Sbjct: 122 DPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYSQADLEIWLASY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|254584204|ref|XP_002497670.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
 gi|6523570|emb|CAB62290.1| hypothetical protein [Zygosaccharomyces rouxii]
 gi|238940563|emb|CAR28737.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
          Length = 415

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 129/332 (38%), Gaps = 65/332 (19%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQS-----FNQKSRH---TSQPENLFLYGVHT 56
            +++    F  + +H  +L+ N R  ++ ++     F +K+        P   ++YG ++
Sbjct: 77  QQQEPRDPFGKRKAHELRLKENQRRMEQERTTHVHKFEKKNATQGLRPNPLMEYVYGTNS 136

Query: 57  VSAALNNPSRKIF-QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
           V AAL    R+ + +LL       RL   A       +       ++ +    AVH  + 
Sbjct: 137 VLAALQGNKREYYSRLLHYGQLDPRLQKLAK-SRNVELVETDKHRLNLMTNY-AVHNNII 194

Query: 116 LETAPLLSPTLDAV---------------------------------RNSQLLMVLDHVN 142
           LET PL  P +  +                                 +N  L + LD V 
Sbjct: 195 LETKPLQPPEISHLQMVNPESGTIQYSELAFEDEKITQEMPYGVKNGKNFPLGIYLDEVV 254

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DPHNIGAI+RSA     D I+ +++     SA ++K++SGA+E +P   +        + 
Sbjct: 255 DPHNIGAIMRSAYFLGADFIVMSRKNCAPLSAAVSKTSSGAIELLPIFYVDKPLSFFSES 314

Query: 203 HSWGFQTIGLSS-----------DSKKPLEQEIKND-----KIALILGAEGKGLRPKTQE 246
              G  T   +            +S K LE            + L++G EG G+R   + 
Sbjct: 315 QQGGGWTFVTAGLTDFTQKDKKFNSGKILELNDLEGLCEQVPVVLVVGNEGSGVRTNLKM 374

Query: 247 TATSMAHLHM-----PGIIKALNVSNAAAVAL 273
            +     +        G + +LNVS A A+ +
Sbjct: 375 RSDFFVEIPFGRDDEKGPVDSLNVSVATALLI 406


>gi|319405240|emb|CBI78845.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
           15-3]
          Length = 271

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 113/275 (41%), Gaps = 19/275 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I ++ ++   +L   +R+ ++     ++             G   + + L +       L
Sbjct: 5   ITTIHEADDPRL-EAYRNIREKDLVGRQ-------HQFIAEGKVILLSLLRSKEFSTLSL 56

Query: 72  LATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTL 126
           L     L  +        P  P+  VP + +D I G   VH+G+      +  PLL   L
Sbjct: 57  LVVAARLLSIMPILKETKPTCPIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPLLKEFL 115

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +    L+ VL  +++  N+GAI R+A AF+  GII  K           + ++GA  +
Sbjct: 116 QNLPEKALISVLCGISNHDNMGAIFRNAAAFASTGIIIDKTSCDPLYRKSIRVSAGAALN 175

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +PY +  ++   +  + +  F    LS  + + L+        ALI G EG GL     +
Sbjct: 176 VPYTQGDDIDSIVTALSNANFHLYALSPSASRYLKDAKATKHTALIFGTEGNGLPAHILQ 235

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +     + M     ++NV+ A+ +AL     HFA
Sbjct: 236 KS-ETLRIPMAYGFDSINVATASGLAL----AHFA 265


>gi|295394712|ref|ZP_06804928.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972445|gb|EFG48304.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 293

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 102/241 (42%), Gaps = 7/241 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     + +   +           +  A ++   K        + L  L       
Sbjct: 39  DYTQLTDVELRKKLEPENGLFISESSKIIQRA-HDAGMKFRSFFLNAHWLEPLAPVIA-H 96

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           H  P+       ++K+ G   +H+G    T  P L    + VR++ ++++++ + D  N+
Sbjct: 97  HDVPIYVGSEADLEKVAGFR-LHRGALASTQRPHLPSVAEVVRDTSVVVIIEDLVDHTNV 155

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RS  A   D ++ T R +        + + G +  +P+ RI    +++      GF
Sbjct: 156 GAIFRSVAALGADAVLVTPRCADPLYRRAIRVSMGTVFQVPWTRIDPWPESIDTFQDAGF 215

Query: 208 QTIGLSS-DSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              G++  +    L++ +  D  K+AL+ G+EG GL   T++       + M G + +LN
Sbjct: 216 VVAGMTLGEGAITLDELVAEDYEKLALVFGSEGPGLTQATEQRLDRRVTIPMMGGVDSLN 275

Query: 265 V 265
           V
Sbjct: 276 V 276


>gi|119499892|ref|XP_001266703.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
           NRRL 181]
 gi|119414868|gb|EAW24806.1| RNA methyltransferase, TrmH family family [Neosartorya fischeri
           NRRL 181]
          Length = 484

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 127/352 (36%), Gaps = 85/352 (24%)

Query: 7   KKSEKIFSLKDSHYAK-LRRNHRDYKKMQSF-----NQKSRH--------TSQPENLFLY 52
           +  E+  ++K+    + L+   R  +  + F      QK +H         + P + F+Y
Sbjct: 112 QADERAKTIKEHRKERDLQERSRLKRGEKRFTEGEPEQKKKHVLVPDSVPYTTPASEFIY 171

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVK--TVPPQTIDKI 104
           G   V AAL +  R++++L   +     L           L     VK        +   
Sbjct: 172 GTSAVEAALRSGRRQLYKLYIYQGDNEELGPTRSMLRKLALSKNIKVKMAYAGWDRLFDQ 231

Query: 105 VGKEAVHQGLALETAPLLSPTLDAV----------------------------------- 129
           +     H G  L+ +PL    + ++                                   
Sbjct: 232 MSSGRPHNGCILDASPLPQLPVKSLCATPTLGADEFRVVLAPQSKEEATVNSTNNRIPVR 291

Query: 130 -----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    ++++LD + D  N+G I+RSA     D I+   R     S +  K+++GA 
Sbjct: 292 HLPGKSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPITIKASAGAA 351

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS--------SDSKKPLE---QEIKNDKIALIL 233
           E++P I++SN  D +Q+  + G+               D+   ++     +      ++L
Sbjct: 352 ENMPLIKVSNEVDFIQQSKANGWHFFAADAPLPGSRYPDTTGDIDLTRNAVTQAPSVIML 411

Query: 234 GAEGKGLRPKTQETATSMAHLHMPG------------IIKALNVSNAAAVAL 273
           G+EG GL    +  A S+  +                 + +LNVS AAA+ +
Sbjct: 412 GSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDSARVDSLNVSVAAAILM 463


>gi|88856437|ref|ZP_01131095.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814304|gb|EAR24168.1| rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 266

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 107/242 (44%), Gaps = 10/242 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY        +    ++           +  AL +  R +  +LA   ++  +       
Sbjct: 16  DYSHQTDVALRKAQGTEHGLYLAESALVLQRALRSGHR-VRSVLALGTSVDEIVELVG-- 72

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              P+ T     + ++ G   +H+G+    +  PL +PT + + +++ +++L++V DP N
Sbjct: 73  EDVPIFTGDGSLLAELTGY-VLHRGVIASMQRPPLPTPT-ELLTDARRIVILENVVDPTN 130

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI RS      D ++ T++ S        + + G +  +P+ RI N  D    + + G
Sbjct: 131 VGAIFRSVAGIGADAVLVTEQCSDPFYRRAIRVSMGTVLQVPWTRIGNWADTRVLLTASG 190

Query: 207 FQTIGLSS-DSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           FQ   L+  D    L        +K+AL+LG EG GL  +  + A ++  + M   I +L
Sbjct: 191 FQIAALALEDGAVSLRDYAADAPEKVALVLGTEGHGLTREAIDAADTIVQIPMRHGIDSL 250

Query: 264 NV 265
           NV
Sbjct: 251 NV 252


>gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
           artemidis F0399]
 gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
           artemidis F0399]
          Length = 277

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 100/284 (35%), Gaps = 22/284 (7%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           KK E+I S          +++R  +   +     +   +     + G+    + + +  R
Sbjct: 2   KKLERITS----------KSNRLVRLAHAVVHMPKRAKKEGLFAVEGLRLAESIMQSEWR 51

Query: 67  KIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             F     +      A    +       PV  +  +    +   +   QG+ L       
Sbjct: 52  IHFAFFTDRGGESLAAAQLVEKLCERRTPVYLISDELCAALSDTD-TPQGVLLIAERDPG 110

Query: 124 PTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             L             L +VLD V DP N+G ILR+AVA    GI+  +  +   +  + 
Sbjct: 111 TPLKRFMRPCSNEPHPLYVVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVV 170

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAE 236
           ++A G L ++   +     D LQ            + D   +           A++ G E
Sbjct: 171 RAAMGGLFYMNVAQGVEEKDFLQWAQERSLNLYAAACDDMAQEHIHTDFTKTTAVVFGNE 230

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             G+       A    ++ M G +++LNVS AAAV LY      
Sbjct: 231 ANGVSSAILARA-RRVYVPMFGPVESLNVSAAAAVILYECVRQR 273


>gi|282854676|ref|ZP_06264011.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|282582258|gb|EFB87640.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|314981978|gb|EFT26071.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA3]
 gi|315090889|gb|EFT62865.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA4]
          Length = 277

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 94/244 (38%), Gaps = 13/244 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDAN 86
           DY  ++  N +    ++       G   +  A     P R    LLA +      D    
Sbjct: 17  DYVSLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSF--LLAPRWIDGLRDLFDG 74

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           L     V  V     +++ G + VH+G           +   +  ++ L+V + + D  N
Sbjct: 75  L--DVEVFVVSETLAEQVTGFQ-VHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTN 131

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAI+R A     DG++   R +        K++ G +  +P+ R+ +    L ++   G
Sbjct: 132 VGAIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLDELRDHG 191

Query: 207 FQTIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           F    ++         E   D      K+AL++G EG GL       A  +  + M G +
Sbjct: 192 FTVAAMALSGDSLSLDEFSADLRQNPRKVALLMGTEGTGLSAHWISQADVVVRIPMAGGV 251

Query: 261 KALN 264
            +LN
Sbjct: 252 DSLN 255


>gi|240168029|ref|ZP_04746688.1| putative 23S rRNA methyltransferase [Mycobacterium kansasii ATCC
           12478]
          Length = 261

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 100/244 (40%), Gaps = 11/244 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTI 101
             +       G + V AA  +    + ++  T+ A  R + W A   H  PV  V  +  
Sbjct: 21  RRRANRFLAEGPNLVEAA--SARGLVREVFVTEVAAQRHETWLAG--HDAPVHLVT-ERA 75

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            K +       GL      + +  LD V  R+ +L+     +++P N G ++R A A   
Sbjct: 76  AKALSDTVTPAGLVA-VCDIPTTRLDDVLTRSPRLIATAVEISEPGNAGTLIRIADAMGA 134

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             +I         +    ++++G++ +IP + +++   A+  +   G Q +  + D +  
Sbjct: 135 AAVILAGHSVDPYNGKCLRASAGSIFNIPVVAVADTHAAIVSLRGAGLQVLATAVDGETS 194

Query: 220 LEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L+          A + G E  GL  +    A     + M G  ++LN++ AAA+ LY + 
Sbjct: 195 LDDADPLLGVATAWLFGPESHGLSAEIAGAADHRVRIPMSGRAESLNIAAAAAICLYQSA 254

Query: 278 NHFA 281
              +
Sbjct: 255 RALS 258


>gi|328881199|emb|CCA54438.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 272

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 9/240 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     + R           G   +  A          LL+ K      D    +P 
Sbjct: 18  YTGLTDVELRRRREPAEGLFIAEGEKVIRRARQAGYEMRSMLLSAKWVDVMRDVIDEVP- 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             PV  + P   +++ G   VH+G     +  PL     + +  ++ ++V++ VND  NI
Sbjct: 77  -APVYAIQPDLAERVTGYH-VHRGALASMQRKPLPDAA-ELLVGARRVVVMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPRGLEAVREAGF 193

Query: 208 QTIGLSSDSKK-PLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + + L+   K   +++   +  +++AL+LGAEG GL  +    A     + M   + +LN
Sbjct: 194 KLLALTPAEKAMSIDEAAPHRLERVALMLGAEGDGLTTQALRAADEWVRIPMAHGVDSLN 253


>gi|192359318|ref|YP_001982265.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190685483|gb|ACE83161.1| RNA methyltransferase, TrmH family [Cellvibrio japonicus Ueda107]
          Length = 259

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 9/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALAR-LDWDANLPH--PFPVK 94
           K++       + +YG  TV  AL   +  I++L LA  N  A  LD    L       + 
Sbjct: 11  KAKKRFFDSLMTIYGRKTVLEALQEKAVSIYRLHLANSNKRAEILDQIIELAKLKGADII 70

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGA 149
                 + +I    +  QG+A +       T +       +N+  L+ LD + +P N+G 
Sbjct: 71  YHERNALSRISKNASQDQGVAADLQLPGYQTYEQFLATPPKNNYRLLALDGITNPQNLGM 130

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSA A + DGI+   + +     ++ K+++G L   P +R  NL DAL+     G   
Sbjct: 131 IIRSACAGNIDGILLPLKGAAQIDPLVIKASAGTLFRAPILRCQNLVDALKDFSRHGASL 190

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             LSS +   L           +LG E  G+     +  T    + M   +++LNV+  A
Sbjct: 191 CALSSHAHHNLSGFRPEGASIYVLGNETHGVSDPVFQLCTEKIKIPMNNGVESLNVAVTA 250

Query: 270 AVALY 274
           A+  +
Sbjct: 251 ALIAF 255


>gi|50843004|ref|YP_056231.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
 gi|289426359|ref|ZP_06428102.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|295131075|ref|YP_003581738.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|50840606|gb|AAT83273.1| rRNA methylase family protein [Propionibacterium acnes KPA171202]
 gi|289153087|gb|EFD01805.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|291376146|gb|ADE00001.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|313763557|gb|EFS34921.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA1]
 gi|313793949|gb|EFS41973.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA1]
 gi|313801336|gb|EFS42587.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA2]
 gi|313811547|gb|EFS49261.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA1]
 gi|313813395|gb|EFS51109.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA1]
 gi|313816737|gb|EFS54451.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA1]
 gi|313829433|gb|EFS67147.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA2]
 gi|313839942|gb|EFS77656.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL086PA1]
 gi|314914711|gb|EFS78542.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA4]
 gi|314919328|gb|EFS83159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA1]
 gi|314920763|gb|EFS84594.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA3]
 gi|314930642|gb|EFS94473.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL067PA1]
 gi|314954402|gb|EFS98808.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA1]
 gi|314957514|gb|EFT01617.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA1]
 gi|314963698|gb|EFT07798.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA1]
 gi|315079548|gb|EFT51541.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA2]
 gi|315081223|gb|EFT53199.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL078PA1]
 gi|315099183|gb|EFT71159.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA2]
 gi|315100333|gb|EFT72309.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA1]
 gi|315106854|gb|EFT78830.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA1]
 gi|315108983|gb|EFT80959.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA2]
 gi|327334215|gb|EGE75929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL097PA1]
 gi|327452027|gb|EGE98681.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL092PA1]
 gi|327454935|gb|EGF01590.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA3]
 gi|327457778|gb|EGF04433.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA2]
 gi|328755231|gb|EGF68847.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA1]
 gi|328758289|gb|EGF71905.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA2]
          Length = 269

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 9/242 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++  N +    ++       G   +  A          LLA +      D    L 
Sbjct: 17  DYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL- 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V     +++ G   VH+G           +   +  ++ L+V + + D  N+G
Sbjct: 76  -DVEVFVVSETLAEQVTGFH-VHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R A     DG++   R +        K++ G +  +P+ R+ +    L ++   GF 
Sbjct: 134 AIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGFT 193

Query: 209 TIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              ++         E   D      K+AL++G EG GL       A  +  + M G + +
Sbjct: 194 VAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVDS 253

Query: 263 LN 264
           LN
Sbjct: 254 LN 255


>gi|317055279|ref|YP_004103746.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315447548|gb|ADU21112.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 269

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 6/226 (2%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            +  AL+     +  L+  +    +           PV +   + ++KI G +     L 
Sbjct: 39  VIRTALDAGYEAVSLLMDERYISGQAADIVERVGDVPVYSAGKKLLEKITGFKLTQGVLC 98

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                     L A      + VL+ + +  N+GAI RSA A   D ++ T   S      
Sbjct: 99  AMKRKSEDTALPA--EVHRVAVLEDIMNQTNMGAIFRSAAALGVDAVLLTDGCSDPLFRR 156

Query: 176 LAKSASGALEHIPY-IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE--IKNDKIAL 231
             + + G +  +P+     + +  + ++   GF T  ++  +    +E E   + +K+A+
Sbjct: 157 TIRVSMGTVFQVPWKFIGKSDSGYIYRLKKEGFLTAAMALRADTVSIEDEGLKRAEKLAI 216

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +LG EG GL+  T E       + M   + +LNV+ A AVA +  +
Sbjct: 217 VLGTEGDGLKASTIEDCDMTIKIPMAHGVDSLNVAAAGAVAFWEMR 262


>gi|297379754|gb|ADI34641.1| RNA methyltransferase, TrmH family, group 3 [Helicobacter pylori
           v225d]
          Length = 227

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+       L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLARVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|299769111|ref|YP_003731137.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
 gi|298699199|gb|ADI89764.1| SpoU rRNA Methylase family protein [Acinetobacter sp. DR1]
          Length = 258

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 17/262 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K ++   + +    + +   L G H     L    +KIF L  T+ AL   D 
Sbjct: 8   SKDNAKIKHLRGLIELNSARKKHQQTVLEGTHLCLTWLQQ-QKKIFSLFTTEQALEHTDL 66

Query: 84  DANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
              +     H F +  V  + +  + G       LA+   P  + T+D   +    ++L+
Sbjct: 67  KKIIELHQGHIFVISEVLYRDLSTL-GTSLP--CLAIIDLPKTASTIDYKVD---TLILE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           ++ DP N+G +LRSA A +   II T+  +   S  + ++  GA   +       LTD L
Sbjct: 121 NIQDPGNVGTLLRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLHCFENFQLTDIL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K           SS     L  +  +     ILG EG+G      + A     +  PG 
Sbjct: 181 PKF---PIPVFVTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALDHA-ESVTIPQPGG 236

Query: 260 IKALNVSNAAAVALYI--TQNH 279
            ++LNV+ A ++  +    Q  
Sbjct: 237 QESLNVAIAGSICFFEMVRQRQ 258


>gi|269137918|ref|YP_003294618.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267983578|gb|ACY83407.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304557970|gb|ADM40634.1| hypothetical tRNA/rRNA methyltransferase YfiF [Edwardsiella tarda
           FL6-60]
          Length = 393

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 93/248 (37%), Gaps = 13/248 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    +    R          +      V   
Sbjct: 146 RRQRAEETRVYGENACQALFASRPEAIVRAWFLQAVTPRFREALRWMAANRKAYHVVDDA 205

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153
            + K  G +  H G+        S          A      ++ L++V +PHN+G I+R+
Sbjct: 206 ELTKASGTD-HHGGVCFLIKKRRSLDAQQYLANQAEDAVDCVLALENVANPHNLGGIMRT 264

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   GII  +  +  ES    ++A G  EH+  I   + + AL      G+  +  S
Sbjct: 265 CAHFGIRGIIAPE-SAALESGAAVRTAEGGAEHVQAIDAEDFSAALDTFRRAGYTIVTTS 323

Query: 214 SD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S      L +     KI L++G EG GL   T +       +   G +++LNVS A  + 
Sbjct: 324 SHKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLQQGDLSVSIGGTGSVESLNVSVATGIM 383

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 384 LAEWWRQN 391


>gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 270

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/231 (20%), Positives = 97/231 (41%), Gaps = 13/231 (5%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
                + G+H +  A       I QL   +    R D +A L +      +  +  + + 
Sbjct: 51  TGQALIEGIHLIEEA-QQSGITIQQLFVIE--PDRTD-EALLNYANETYEINMKVAEALS 106

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           G     QG               V  +Q ++++D + DP N+G ++R+A A   D I+  
Sbjct: 107 GT-VTPQGFFAVIDKPQYD----VSKAQQVLLIDRIQDPGNLGTLIRTADAAGLDLIVME 161

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K  +      + +++ G++ HIP +      D    M+++     G + ++    ++   
Sbjct: 162 KGTADPYQDKVMRASQGSIFHIPVV----TEDLATYMNNFDGPVYGTALENAVSFKEIEA 217

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               AL+LG EG+G+  +  +  T    + + G  ++LNV+ A ++ LY  
Sbjct: 218 QSTFALLLGNEGEGVNQELLQQTTKNLIIPIYGKAESLNVAIAGSILLYQL 268


>gi|256073948|ref|XP_002573289.1| rRNA methylase [Schistosoma mansoni]
 gi|238658466|emb|CAZ29521.1| rRNA methylase, putative [Schistosoma mansoni]
          Length = 338

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 116/299 (38%), Gaps = 66/299 (22%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--------NALARLDW----DANLPHP 90
            ++  +  LYG+H V  AL    R I++L            + L  +      +  L + 
Sbjct: 21  RTRQSSELLYGIHPVLCALTFRHRDIYRLYVKDTLSNCKDPDNLVEISTFQITEKALKYG 80

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------------------- 130
            PV  VP + + ++    A HQG+ LE +P    ++  +                     
Sbjct: 81  IPVTRVPVEKLKELSNSRA-HQGVILEVSPTTIQSISDLSIKNLLFSWNNLSGNLPYAKK 139

Query: 131 -NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +   +++LDH+ D  N G ILRSA  F    +I +     S S +++K + GA+E I +
Sbjct: 140 YHRPTVLLLDHMMDTMNFGNILRSAAFFGISAVILSTSPCVSPSPLISKISVGAMESILF 199

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--------------------IKNDKI 229
            R+++    ++ + + GF  +G   +S+ P  +                     +    +
Sbjct: 200 YRLTDTVMDMKSLSNAGFLIVGTCGESQLPSSKVSKSTDLLKPDEVGANNDNTGVYPRPL 259

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGII------------KALNVSNAAAVALYIT 276
            L LG+E +GL      +   +  +   G               +LNVS AA + LY  
Sbjct: 260 ILALGSESRGLSENVLNSCDLLLRIPGYGDSTKLNQCISQTIPSSLNVSVAAGILLYQL 318


>gi|257469642|ref|ZP_05633734.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317063878|ref|ZP_07928363.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689554|gb|EFS26389.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 255

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 86/183 (46%), Gaps = 6/183 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +   ++  +E   QG+ +   P +  +L+ ++ +  ++VLD + DP N+G I+R A
Sbjct: 72  IVSEKVFGQLTSQE-NSQGVIV-VYPYIKGSLEKLQKN--IVVLDKIGDPGNLGTIIRVA 127

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     II TK      +  + +S+ G++ ++  + +    + +  +   G++    + 
Sbjct: 128 DAAGFKDIILTKGSVDCYNEKVVRSSMGSILNMNILYMEE-EELITFLKREGYKIEVTAL 186

Query: 215 D-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D       +    ++ A++ G+EG G+     +       + + GI ++LNV+ A  + L
Sbjct: 187 DKDSVSYTEMKLTERNAIVFGSEGDGVSQNFLKMCDEKIIIPIYGIAESLNVAMACGIIL 246

Query: 274 YIT 276
           Y T
Sbjct: 247 YKT 249


>gi|313904294|ref|ZP_07837672.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
 gi|313470844|gb|EFR66168.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
          Length = 283

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 94/254 (37%), Gaps = 17/254 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-----RLD 82
           R Y +M     +  +              ++ AL+     +  L   +   A        
Sbjct: 14  RIYSEMTEPELRHYYEPNGGIFIAESPKVIARALDAGCEPVSVLADRREIEAGREGNEAA 73

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    PV     + + +I G       L     P L    +  R+ + ++ L+ V 
Sbjct: 74  DILRRCSDVPVYVAEEKVLSRITGFRLTRGMLCAMRRPSLPGMEELCRDKRRIVFLEDVV 133

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--------SN 194
           +P N+GAI RSA A   + ++ T   S       A+ + G +  IP+             
Sbjct: 134 NPTNVGAIFRSAAALGMEAVVLTPGSSDPLYRRAARVSMGTVFQIPWTYSPAPASLPREE 193

Query: 195 LTDA-LQKMHSWGFQTIGLSSDSKK-PLEQ--EIKNDKIALILGAEGKGLRPKTQETATS 250
              A ++++   GF T  ++  +    ++     + +K+A++LG EG GL  K+ ET   
Sbjct: 194 WPQAGIRRLKELGFVTAAMALRNDTVSIDDPVFDRTEKLAVVLGTEGDGLAAKSMETCDY 253

Query: 251 MAHLHMPGIIKALN 264
              + M   + +LN
Sbjct: 254 TIKIPMTHGVDSLN 267


>gi|296394203|ref|YP_003659087.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181350|gb|ADG98256.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 295

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 21/258 (8%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQT 100
             +       G + V AA+     K  ++ A++ A                PV  V  + 
Sbjct: 32  RRKAGEFLAEGPNNVRAAITTG--KALEIFASEAAAHEHSELIAAAGEAGIPVCCVDDRA 89

Query: 101 IDKIVGKEAVHQGLALETAPL---------LSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
             K+        GL    A L              +   ++ L++VL    DP N+G  L
Sbjct: 90  ARKLTDA-VTPVGLVARCALLDCSLPQALGPQDDWEKPGHAPLVVVLVEPRDPGNVGTAL 148

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A AF     +         +   A+S++G+L  +P +R  ++  AL ++   G     
Sbjct: 149 RAAHAFGASAFLVLGDGVDPHNPKAARSSAGSLFAVPVVRERDVAAALGQLRDAGLLLFA 208

Query: 212 LSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----IKALN 264
            ++D+  PL++   +     A + G E  GL     + A     + M        I++LN
Sbjct: 209 TTADADLPLDEAESLLQRPCAWLFGNEASGLPEPAAQAADRRIAVPMRPTPGFAPIESLN 268

Query: 265 VSNAAAVALYITQNHFAK 282
           ++ AA + LY T    ++
Sbjct: 269 LAVAAGICLYETARQRSR 286


>gi|295690068|ref|YP_003593761.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295431971|gb|ADG11143.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 263

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 94/252 (37%), Gaps = 7/252 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDW 83
           +   K +++ + + +   +       G+  V  A++        +     A     +   
Sbjct: 11  NATVKAVRALHMR-KEREESGLFLAEGLKIVIEAIDCGHAPKIVMYGPDAADHPMLKKAV 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVN 142
            A L     V  V  + ++K+  ++   Q +      + +P    V   +   + +  V 
Sbjct: 70  AACLKAGGEVIEVNREILEKVSRRD-NPQAVVAVFRQVFTPLTAIVPESAPCWVAMQAVR 128

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R+A A  C G+I         S    ++  G++  +   + + + + L   
Sbjct: 129 DPGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAKAT-IPEFLAWR 187

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +W    +G    +    +         +++G E +GL P+          + M G   +
Sbjct: 188 ETWPGSVVGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNVKIPMRGRADS 247

Query: 263 LNVSNAAAVALY 274
           LN+S A  + +Y
Sbjct: 248 LNLSVATGIMIY 259


>gi|258654827|ref|YP_003203983.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258558052|gb|ACV80994.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 268

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 99/252 (39%), Gaps = 6/252 (2%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           ++D+   +L     D++ ++  +++         +   G   V   L +    +  L+  
Sbjct: 7   VRDADDPRL----ADFRDLKRADRRPDRPGGRGLVIAEGTVVVRRLLASTY-PVRALIGV 61

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
                 L  D       P   V  + + +++G       LA        P  D +  ++ 
Sbjct: 62  ARRFEELADDLA-DVDVPYYVVDAELMAQVIGFHLNRGVLATADRVAHPPAADLLAGARS 120

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + VL+ V D  N+G+I R+A       ++     +        + + G + H+P+  +  
Sbjct: 121 VAVLEGVGDHENLGSIFRNAAGLGIGAVLLADGCADPLYRRSVRVSMGTVLHVPFAPLPW 180

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           L + +  +   GFQ I L+   +  L     + ++AL++G+EG GL       A     +
Sbjct: 181 LDEGVDLLRRNGFQLIALTPAGECRLADTRVSGRVALLVGSEGPGLTDAAMAAADLRVRI 240

Query: 255 HMPGIIKALNVS 266
            M   I +LNV+
Sbjct: 241 PMHRGIDSLNVA 252


>gi|302550249|ref|ZP_07302591.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302467867|gb|EFL30960.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 287

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 8/218 (3%)

Query: 68  IFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           + +L AT  A  R              V     Q +  I       QGL      L +P 
Sbjct: 57  LVELFATPEAAERYADIVGAARDAGARVHLASEQVVADI-STTVTPQGLVGICRFLDTPF 115

Query: 126 LDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            + +    +L+ +L +V DP N G +LR A A   + ++ T       +    +++ G+L
Sbjct: 116 EEVLAARPRLVALLANVRDPGNAGTVLRCADAAGAEAVVLTDASVDVYNPKAVRASVGSL 175

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGL 240
            H+P     ++  A++ + + G + +       + L+ E+         A + G E  GL
Sbjct: 176 FHLPVAVGVSVERAVEGLRAEGVRVLAADGAGDRDLDAELDKGTMGGPTAWVFGNEAWGL 235

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +T+    ++  + + G  ++LN++ AAAV LY +  
Sbjct: 236 PEETRALTDAVVRVPIHGKAESLNLATAAAVCLYASAR 273


>gi|314968474|gb|EFT12572.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA1]
          Length = 269

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 9/242 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++  N +    ++       G   +  A          LLA +      D    L 
Sbjct: 17  DYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL- 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V     +++ G   VH+G           +   +  ++ L+V + + D  N+G
Sbjct: 76  -DVEVFVVSETLAEQVTGFH-VHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R A     DG++   R +        K++ G +  +P+ R+ +    L ++   GF 
Sbjct: 134 AIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGFT 193

Query: 209 TIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              ++         E   D      K+AL++G EG GL       A  +  + M G + +
Sbjct: 194 VAAMALSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVDS 253

Query: 263 LN 264
           LN
Sbjct: 254 LN 255


>gi|319638350|ref|ZP_07993112.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
 gi|317400099|gb|EFV80758.1| TrmH family RNA methyltransferase [Neisseria mucosa C102]
          Length = 263

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 100/287 (34%), Gaps = 37/287 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  ++E++                  K +     +++   +     L GVH +   
Sbjct: 1   MKLITSAQNEQL------------------KHLFRLLTQAKARRESGETVLEGVHLLQTY 42

Query: 61  LNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           L +        L  K      +           +  V  + + KI           L  A
Sbjct: 43  LQSGGTPKQVYLPEKKQQHPEIQEITAQLDEGLITWVGNEALSKITS---------LTDA 93

Query: 120 PLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             +   +D  + + L      +VL+ V DP N G ILRSA A     I+ +       S 
Sbjct: 94  DDVMTWIDIPKQAGLPSDDDCVVLERVQDPGNAGTILRSAAAAGVKQIVCSNDSVDIWSP 153

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALIL 233
            + ++  GA   +       L+  ++K           +   +   L +   +   A + 
Sbjct: 154 KVLRAGMGAHFLLSIFSRVELSAWMEKYQ---HPIWATALGGRNIGLYEMNLSQSCAWVF 210

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G EG G+  + +E A +   + M G  ++LNV+ AA V L+      
Sbjct: 211 GNEGSGVSERIKEKAEACVKIPMLGQTESLNVAMAATVCLFEQMRQR 257


>gi|284991463|ref|YP_003410017.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284064708|gb|ADB75646.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 261

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 7/254 (2%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           R  + + +     R       LFL  G   V+ AL +P+  + ++LAT+ A A    D  
Sbjct: 7   RSARVVAARKLTRRAGRDAAGLFLAEGRQAVAEALADPA-GVREVLATE-AAAAAHRDLL 64

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPH 145
              P PV+ V  +    +  +    QGL    A    PT   V     L + L  + DP 
Sbjct: 65  AAAPVPVRLVTDKAAAAL-SETVTPQGLVAVCALRDVPTDVLVDAPPSLTVALAELADPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G +LR+A A     ++     +        +S++G+L H+  +R + L + L ++ + 
Sbjct: 124 NAGTVLRTADACGAGAVVFGAGSADPYGGKAVRSSAGSLFHVDVVRGAPLPELLPRLRAA 183

Query: 206 GFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G   +      +  L++        +  + G E +G+       A +   + M G  ++L
Sbjct: 184 GVTVLAADGGGEAALDELGPELAGPVLWLFGNEARGVPAALAALADARVRIPMRGRAESL 243

Query: 264 NVSNAAAVALYITQ 277
           N++ AAA+ LY TQ
Sbjct: 244 NLAAAAAICLYTTQ 257


>gi|240128164|ref|ZP_04740825.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268686558|ref|ZP_06153420.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268626842|gb|EEZ59242.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 261

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 97/263 (36%), Gaps = 18/263 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDW 83
           N+   + +     + +   Q     L GVH +   L +  + +   +      +   L  
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMPSEEVLKL 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL-----MVL 138
            A LP    + +V    + KI           L  A  +   +D      LL      VL
Sbjct: 68  TAVLPED-GIFSVSDGILKKISS---------LSCADDILTLIDIPLGGTLLDKGDCAVL 117

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L   
Sbjct: 118 DGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLEIW 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L       F T  L  + +  L  E   +  A + G EG G+     + A     + M  
Sbjct: 178 LAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHD 236

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             ++LNV+ AA + L+      A
Sbjct: 237 ATESLNVAMAATICLFEQMRQRA 259


>gi|313773496|gb|EFS39462.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL074PA1]
 gi|313831288|gb|EFS69002.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL007PA1]
 gi|313834898|gb|EFS72612.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL056PA1]
 gi|314974163|gb|EFT18259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA1]
 gi|314976546|gb|EFT20641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL045PA1]
 gi|314984365|gb|EFT28457.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA1]
 gi|315095303|gb|EFT67279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL038PA1]
 gi|327328435|gb|EGE70197.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA2]
 gi|327444221|gb|EGE90875.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA2]
 gi|327444899|gb|EGE91553.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA1]
 gi|328760022|gb|EGF73604.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL099PA1]
          Length = 269

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 9/242 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++  N +    ++       G   +  A          LLA +      D    L 
Sbjct: 17  DYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL- 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V     +++ G   VH+G           +   +  ++ L+V + + D  N+G
Sbjct: 76  -DVEVFVVSETLAEQVTGFH-VHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R A     DG++   R +        K++ G +  +P+ R+ +    L ++   GF 
Sbjct: 134 AIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGFT 193

Query: 209 TIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              ++         E+  D      K+AL++G EG GL       A  +  + M G + +
Sbjct: 194 VAAMALSGDSVTLDEVSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVDS 253

Query: 263 LN 264
           LN
Sbjct: 254 LN 255


>gi|70993278|ref|XP_751486.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           Af293]
 gi|66849120|gb|EAL89448.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           Af293]
 gi|159125580|gb|EDP50697.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
           A1163]
          Length = 484

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 128/362 (35%), Gaps = 91/362 (25%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFN------------QKSRH-------- 42
            + + K  +I + + +   K  R  RD +                  Q+ +H        
Sbjct: 102 DLPEPKRPRIQTHERAKTIKEHRKERDLQDRSRLKRGEIRFTEGEPEQQKKHVLVPDSVP 161

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVK-- 94
            + P + F+YG   V AAL +  R++++L   +     L           L     VK  
Sbjct: 162 YTTPASEFIYGTSAVEAALRSGRRQLYKLYIYQGDNEELGPTRSMLRKLALSKNIKVKMA 221

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------------------------- 129
                 +   +     H G  L+ +PL    + ++                         
Sbjct: 222 YAGWDRLFDQMSSGRPHNGCILDASPLPQLPVKSLCATPTLGADEFRVVLAPQSKEEAMV 281

Query: 130 ---------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                              ++++LD + D  N+G I+RSA     D I+   R     S 
Sbjct: 282 NSTNNRVPVRHLPGQSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIVFAGRNCAPLSP 341

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--------SDSKKPLE---QE 223
           +  K+++GA E++P I++SN  D +Q+  + G++              D+   ++     
Sbjct: 342 ITIKASAGAAENMPLIKVSNEVDFIQQSKANGWRFFAADAPLPGTRYPDTTGDIDLTRNA 401

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAV 271
           +      ++LG+EG GL    +  A S+  +              P  + +LNVS AAA+
Sbjct: 402 VTQAPSVIMLGSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDPARVDSLNVSVAAAI 461

Query: 272 AL 273
            +
Sbjct: 462 LM 463


>gi|332827813|gb|EGK00548.1| hypothetical protein HMPREF9455_03191 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 263

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 102/274 (37%), Gaps = 15/274 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           EKI SL++          ++  K+     K++   +     + G   +S A+      I 
Sbjct: 2   EKITSLQNPRI-------KNITKLA----KNKERKEQNLFLIEGARELSLAMTADYE-IN 49

Query: 70  QLLATKNALARLDW--DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            +        + D+    +      +  V     +KI  +E     L L      +    
Sbjct: 50  SVYVCPELFRKTDYPDVLDSIGENKLFEVSEAVFEKIAYREGSDGLLTLAVPKNHTLKDL 109

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +  +  +++L+ V  P N+GAILR+A A   D +I     +   +    +S+ G L  +
Sbjct: 110 QLSENPFIIILEAVEKPGNLGAILRTADAAQADAVIICDPATDLYNPNAIRSSVGCLFTV 169

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                S+  DAL  +     ++      + +  +    +   A+++G E  GL       
Sbjct: 170 KTAVCSS-RDALDFLRHKKIKSFAAELQASQWYQDTDFSIPSAIVMGTEADGLTDFWLTN 228

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A +   + M G I +LNVS + AV  +       
Sbjct: 229 ADARIKIPMRGKIDSLNVSVSTAVLTFEAMRQRG 262


>gi|239978462|ref|ZP_04700986.1| rRNA methylase [Streptomyces albus J1074]
 gi|291450358|ref|ZP_06589748.1| rRNA methylase [Streptomyces albus J1074]
 gi|291353307|gb|EFE80209.1| rRNA methylase [Streptomyces albus J1074]
          Length = 267

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 9/242 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A+      +  LL ++  L  +  D    
Sbjct: 17  DYTDLTDVALRRRREPAEGLFIAEGEKVIRRAVEAGY-TLRSLLLSEKWLD-VMADVIEA 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              PV  V P+  +++ G   VH+G   A+E  PL  P  D +  ++ + VL+ + D  N
Sbjct: 75  ADAPVHLVTPELAEQVTGYH-VHRGALAAMERKPLPDPA-DILTTARRVAVLEDIVDHAN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA  R+A A   D ++ + R +        K + GA+  +P+ R+ +       +   G
Sbjct: 133 VGAAFRNAAALGVDAVLLSPRCADPLYRRAVKVSMGAVLQLPWTRLPDWPAGAGLLGRHG 192

Query: 207 FQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           F T       +     E+   + +K+AL+ G EG GL P     A +   + M   I +L
Sbjct: 193 FLTAAFCLGDRSITLDELAARRPEKLALMFGTEGDGLTPGALAAADTWVRIPMDAGIDSL 252

Query: 264 NV 265
           NV
Sbjct: 253 NV 254


>gi|257068791|ref|YP_003155046.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256559609|gb|ACU85456.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 289

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 117/265 (44%), Gaps = 8/265 (3%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-KN 76
           S  A++ R +  +++ Q+        ++   + + GV  ++ A+ +   +I  LL+  + 
Sbjct: 16  SPPARIERRNALFQQWQALLTNRTKRTRSGEMLIQGVRPITQAI-SHGVEIRALLSDGRE 74

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE-AVHQGLALETAPLLSPTLDAVRNSQLL 135
             +R   D     P PV  + P+ + ++  +E    + LAL   P  S        + L+
Sbjct: 75  QPSRWAQDLLANAPAPVVVLAPELMAELGEREDGAPELLALAAVPSDSLDRLEPTGASLV 134

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V D  + P NIG++ RS  A   D ++ T   + +      ++++G+L  +P +R+ + 
Sbjct: 135 VVFDRPSGPGNIGSLARSVDALGADALLLTGHSADAWDPAAIRASTGSLFAVPVMRLPSH 194

Query: 196 TDALQKM---HSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + L  +    + G  +  +GL       L          L++G E  G+    +E    
Sbjct: 195 REVLDWLTRRRALGEPWTVLGLDEAGGHDLAAADLTGPTLLVVGNETVGMSSGWREACDV 254

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI 275
           +A + M G   +LN S A +VALY 
Sbjct: 255 IAEIPMTGAASSLNASVAGSVALYE 279


>gi|315226503|ref|ZP_07868291.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
 gi|315120635|gb|EFT83767.1| tRNA/rRNA methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 324

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 106/293 (36%), Gaps = 31/293 (10%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-- 68
           +I  +      +L      Y ++     ++R               +  AL      +  
Sbjct: 24  QIIRVDSLDDGRL----ALYTQLTEIQLRNRLEPDKGIFIAESPKVIDRALAAGVEPVSF 79

Query: 69  --FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
              +             D       PV     + + ++ G       L+     +L    
Sbjct: 80  LVEEAWLDGMKAEFDQVDRAWGSTVPVFVASAELLHRLTGYRLHRGALSAMHRWVLPTVE 139

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  + ++ + VL+++ D  N+GAI+RSA A   D ++ T   +       A+ + G +  
Sbjct: 140 EVCKEARRVAVLENIVDYTNVGAIMRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQ 199

Query: 187 IPYIR------ISNLTDALQKMHSWGFQTIGL-----------------SSDSKKPLEQE 223
           +P+ R       +     +  +H  GF T+ +                   D+     ++
Sbjct: 200 VPWTRIGGDDSHAWPHPGIDLLHRLGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRD 259

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + DK+ALI G EG GL  KT  +      + M   + +LNV+ ++AVA Y T
Sbjct: 260 QRVDKVALIFGTEGDGLSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAFYAT 312


>gi|62896307|emb|CAH94293.1| putative rRNA methylase [Streptomyces griseus subsp. griseus]
          Length = 308

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 94/245 (38%), Gaps = 12/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R        H     V     
Sbjct: 55  KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 114

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAF 157
             +   V +    QGL      L +P  + +     L+ VL +V DP N G +LR A A 
Sbjct: 115 DVLAD-VSQTVTPQGLIGVCRFLDTPFPEILAARPTLVAVLANVRDPGNAGTVLRCADAA 173

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I T       +    +++ G+L H+P      +  A+Q +   G + +       
Sbjct: 174 GADAVILTDASVDLYNPKSVRASVGSLYHLPVAVGVPVEQAVQGLRDAGVRILAADGAGA 233

Query: 218 KPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+ E+         A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV L
Sbjct: 234 ADLDDELDAGTMGTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCL 293

Query: 274 YITQN 278
           Y +  
Sbjct: 294 YASAR 298


>gi|288799638|ref|ZP_06405097.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332886|gb|EFC71365.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 267

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 6/247 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     +++  S            +  AL         L   ++               P
Sbjct: 20  LTEAQLRNKQHSDKGLFIAESPKVIEVALKKGFIPTALLCEERHIKGDAANIIAQNPSIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           + T     +  I G       L     P L       + +  + ++D V D  NIGAI R
Sbjct: 80  IYTGTRDMLASITGYTLSRGVLCAMKRPTLPSVESICKTASRIAIVDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   DGI+ TK      +      + G++  IP+  + N    + ++  +GF+T+ +
Sbjct: 140 SAAALGIDGILLTKSSCDPFNRRAVGVSMGSIFLIPWTWLDNN---ISEVSQYGFKTVAM 196

Query: 213 SS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +   +   +         K+A+ILG EG GL   T      +  + M   + +LNV+ A+
Sbjct: 197 ALRHNSIDINDARLKAEKKLAIILGTEGDGLAESTILDTDYVVKIPMYNAVDSLNVAAAS 256

Query: 270 AVALYIT 276
           A+A +  
Sbjct: 257 AIAFWEL 263


>gi|289428651|ref|ZP_06430334.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|289158049|gb|EFD06269.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|313807984|gb|EFS46465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA2]
 gi|313819552|gb|EFS57266.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA2]
 gi|313822125|gb|EFS59839.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA1]
 gi|313823641|gb|EFS61355.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA2]
 gi|313825966|gb|EFS63680.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA1]
 gi|314924709|gb|EFS88540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA3]
 gi|314962120|gb|EFT06221.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA2]
 gi|314978998|gb|EFT23092.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA2]
 gi|314986555|gb|EFT30647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA2]
 gi|314990914|gb|EFT35005.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA3]
 gi|315087106|gb|EFT59082.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA3]
 gi|315089280|gb|EFT61256.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA1]
 gi|327329699|gb|EGE71455.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA3]
 gi|327446385|gb|EGE93039.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA2]
 gi|328752374|gb|EGF65990.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL020PA1]
 gi|332675955|gb|AEE72771.1| rRNA methylase family protein [Propionibacterium acnes 266]
          Length = 269

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 90/242 (37%), Gaps = 9/242 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  ++  N +    ++       G   +  A          LLA +      D    L 
Sbjct: 17  DYVNLRDVNLRKSLEAEHGLFIAEGAKVIRRACEAGYPPRSFLLAPRWIDGLRDLFDGL- 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V  V     +++ G   VH+G           +   +  ++ L+V + + D  N+G
Sbjct: 76  -DVEVFVVSETLAEQVTGFH-VHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNVG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI+R A     DG++   R +        K++ G +  +P+ R+ +    L ++   GF 
Sbjct: 134 AIIRCAAGIGWDGVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGFT 193

Query: 209 TIGLSSDSKKPLEQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              +          E   D      K+AL++G EG GL       A  +  + M G + +
Sbjct: 194 VAAMELSGDSVTLDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVDS 253

Query: 263 LN 264
           LN
Sbjct: 254 LN 255


>gi|254480449|ref|ZP_05093696.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
 gi|214039032|gb|EEB79692.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
          Length = 261

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 116/261 (44%), Gaps = 18/261 (6%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLD- 82
           ++  DY + ++F ++         L +YG      AL +P  +   L L++ N    +  
Sbjct: 2   QDSEDYTQKKAFFER--------VLTVYGRKPALEALRDPLLQCHALHLSSSNRGGGIIT 53

Query: 83  --WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRN--SQL 134
              DA      PV     + + +I       QG+AL+        L   ++ +     Q 
Sbjct: 54  ELLDAAAKKSIPVHEHSREALARISKNGKQDQGVALDILCPSFRSLQTYVEELPGLAPQR 113

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD + +P N+G ILRSA A   D ++ + + + +   ++ K+++G L   P +   +
Sbjct: 114 VLALDGITNPQNLGMILRSAAAGHIDAVLWSSKGNAALGPLVIKASAGTLYRAPLVMCDS 173

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             +AL+++     +   L +++ + L +      +A +LG E +G+     + A     +
Sbjct: 174 QVNALRRLAQQEVEICSLEANASQTLFEFTPKKHVAYVLGNETEGVSKDVVQLADKSLSI 233

Query: 255 HMPGIIKALNVSNAAAVALYI 275
            M   +++LNV+  A++  + 
Sbjct: 234 PMNNGVESLNVAVTASLIAFA 254


>gi|258645251|ref|ZP_05732720.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
 gi|260402601|gb|EEW96148.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
          Length = 269

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 113/258 (43%), Gaps = 11/258 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LA 79
            +N+R + ++    ++ ++  + +   + G+       N     I  L+ ++ A    + 
Sbjct: 6   SKNNR-WIRLAIRLKQKKYRDKNKMFLMEGLRNAEDVQNQEISDIVCLVQSERAENGSVQ 64

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRN-SQLLMV 137
            +       H    +   P  + +++      QG+ L    P +      +       ++
Sbjct: 65  HIFERGENLHWLFCEVEEP--LMRLISGTENGQGIILLVKQPYVMDYPQLLNGLHGKYVL 122

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DP N+GAI+R+A A  C G++ TK  +   S  + +S+ G++  +P     ++ +
Sbjct: 123 LDTVQDPGNVGAIIRTAAAAGCSGVLLTKGSADPYSEKVVRSSMGSILRLPIYHDLDI-E 181

Query: 198 ALQKMHSW-GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L+++ S+     IG S  + +         +   I G EG G+ P+  +       + M
Sbjct: 182 FLKEIKSFSKVPFIGTSLSASQNYRHAKFVTEGVFIFGNEGSGISPEILDLTDWNVFIPM 241

Query: 257 PGIIKALNVSNAAAVALY 274
            G +++LNVS+ AA+ L+
Sbjct: 242 AGTVESLNVSSTAAIILF 259


>gi|225619496|ref|YP_002720753.1| TrmH family RNA methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225214315|gb|ACN83049.1| RNA methyltransferase, TrmH family, group 3 [Brachyspira
           hyodysenteriae WA1]
          Length = 236

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 10/234 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +F+   +T+  A++    +   +    +   +           P+K V    ++KIVGK 
Sbjct: 1   MFITSKNTIVEAISKDLVQTLYIKFPVSKREKDIIKLAEKKKVPIKNVDKNEMEKIVGKI 60

Query: 109 AVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                +A +    +   +D+        R + L+ +LD + D HN+GAI+R+A  F   G
Sbjct: 61  YS---IAADIKENVEIGIDSFIEKAFEKRENPLIFILDSITDVHNLGAIIRNAYFFDVAG 117

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K  S   +  + + + GA  H+P    +NL   +  M   GF     S   +  LE
Sbjct: 118 IIMPKDNSAPINEKVYEISEGAAYHLPISIETNLNRVIDLMKDKGFWIYYASEKGETSLE 177

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               N   A+ILG E  G+R   ++ +     ++      +LNVS A+A+  Y 
Sbjct: 178 DFKFNSPTAIILGNEHSGVRDILKKNSDGSIIINAVNDFDSLNVSAASAIIGYA 231


>gi|17546138|ref|NP_519540.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17428434|emb|CAD15121.1| probable trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 259

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 104/259 (40%), Gaps = 10/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++   +     L G+H V+A L+       Q L ++  LA  + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVP-AQCLVSERHLAHPEV 64

Query: 84  DANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              L    P  +  +      ++     V  G+ L             R     ++LD +
Sbjct: 65  APLLARVDPQGIVLLADSLFAQLT---TVVNGIDLMALIETPEGHLPHRIEHDCVILDGI 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          +
Sbjct: 122 QDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCTFESVHAR 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +H      +  SS ++  +     N  +  + G EG G+  +     T+   +  PG ++
Sbjct: 182 LH---VPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGME 237

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ AAA+ L+      
Sbjct: 238 SLNVAAAAAICLFEAVRQR 256


>gi|294634934|ref|ZP_06713452.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291091643|gb|EFE24204.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 267

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 92/248 (37%), Gaps = 13/248 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 20  RRQRAEETRVYGENACQALFASRPEAIVRAWFLQSVTPRFRDALRWMAANRKAYHVVDDA 79

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAILRS 153
            + K  G +  H G+        S          A +    ++ L++V +PHN+G I+R+
Sbjct: 80  ELTKASGTD-HHGGVCFLIKKRRSLDAQQYLASQAEQAVDCVLALENVANPHNLGGIMRT 138

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   GI+  +  +  ES    ++A G  EH+  I   +    L      G+  +  S
Sbjct: 139 CAHFGIRGIMAPE-SAALESGAAVRTAEGGAEHVQAIDAEDFAATLDTFRRAGYTIVTTS 197

Query: 214 SD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S      L +     KI L++G EG GL   T         +   G +++LNVS A  + 
Sbjct: 198 SHKGTTQLHRATLPAKIVLVVGHEGDGLSDGTLRQGDLSISIGGTGSVESLNVSVATGIM 257

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 258 LAEWWRQN 265


>gi|239998937|ref|ZP_04718861.1| putative RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|240080778|ref|ZP_04725321.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|240112855|ref|ZP_04727345.1| putative RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240117904|ref|ZP_04731966.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|240123463|ref|ZP_04736419.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240125708|ref|ZP_04738594.1| putative RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|254493723|ref|ZP_05106894.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268594782|ref|ZP_06128949.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268596894|ref|ZP_06131061.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268598935|ref|ZP_06133102.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268603614|ref|ZP_06137781.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682090|ref|ZP_06148952.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268684300|ref|ZP_06151162.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|226512763|gb|EEH62108.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548171|gb|EEZ43589.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268550682|gb|EEZ45701.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268583066|gb|EEZ47742.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268587745|gb|EEZ52421.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622374|gb|EEZ54774.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268624584|gb|EEZ56984.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|317164227|gb|ADV07768.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 261

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 97/258 (37%), Gaps = 8/258 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDW 83
           N+   + +     + +   Q     L GVH +   L +  + +   +      +   L  
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMPSEEVLKL 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            A LP    + +V    + KI       + L L   PL       + +     VLD V D
Sbjct: 68  TAVLPED-GIFSVSDGILKKISSLSCADEILTLIDIPLGG----TLPDKGDCAVLDGVQD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L   L    
Sbjct: 123 PGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLEIWLAHYE 182

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++L
Sbjct: 183 DRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATESL 241

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ AA + L+      A
Sbjct: 242 NVAMAATICLFEQMRQRA 259


>gi|238918595|ref|YP_002932109.1| methyltransferase [Edwardsiella ictaluri 93-146]
 gi|238868163|gb|ACR67874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 357

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 96/250 (38%), Gaps = 17/250 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVP 97
              + E   +YG +   A   +    I +       T      L W A     + V  V 
Sbjct: 110 RRQRAEETRVYGENACQALFASRPEAIVRAWFLQAVTPRFRDALRWMAANRKAYHV--VD 167

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLLMVLDHVNDPHNIGAIL 151
              + K  G +  H G+        S          A      ++ L++V +PHN+G I+
Sbjct: 168 DAELTKASGTD-HHGGVCFLIKKRRSLDAQQYLANQAEDAVDCVLALENVANPHNLGGIM 226

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+   F   GII  +  +  ES    ++A G  EH+  I   + +  L      G+  + 
Sbjct: 227 RTCAHFGIRGIIAPE-SAALESGAAVRTAEGGAEHVQAIDAEDFSATLDTFRRAGYTIVT 285

Query: 212 LSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            SS      L + +   KI L++G EG GL   T +       +   G +++LNVS A  
Sbjct: 286 TSSHKGTTQLHRAVLPAKIVLVVGHEGDGLSDGTLQQGDLSISIGGTGSVESLNVSVATG 345

Query: 271 VAL--YITQN 278
           + L  +  QN
Sbjct: 346 IMLAEWWRQN 355


>gi|238927108|ref|ZP_04658868.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
           43531]
 gi|238885088|gb|EEQ48726.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
           43531]
          Length = 276

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 102/264 (38%), Gaps = 12/264 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   +++    +  R   +    F+ G+     A+ +    I   + T++A+       
Sbjct: 11  ENPLIRRLAMLIRSPRRAVKENVFFVEGLRLAEMAVQSNW-AILHAVVTEHAMKMERMQL 69

Query: 86  NL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMV 137
            L        P+ +V  + +     +    QG+ L    L    L+ +        L + 
Sbjct: 70  LLTKLSARNIPIASVS-ERLFSACSETDSPQGIILLLQRLPCTPLEEMVQVTEGLPLYLA 128

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V DP N+G ILR+A A    G+I  +  +    + + ++A G+L ++P++   +  D
Sbjct: 129 LDRVQDPGNVGTILRTADAAGASGVILLRGCADVYGSKVVRAAMGSLFYLPFVTGVDEED 188

Query: 198 ALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            ++            + D+          +    ++LG E  G+  +    A    ++ M
Sbjct: 189 LVRFAKENVLCFYAAACDTDGVTHFAAELSRPSLVVLGNEANGVSERLLR-AGQHLYVPM 247

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
            G  ++LNV+ AA   LY      
Sbjct: 248 CGRAESLNVAAAATAILYEAIRQR 271


>gi|332673651|gb|AEE70468.1| RNA methyltransferase [Helicobacter pylori 83]
          Length = 227

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVLMRILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DGII      
Sbjct: 62  NHQGVLAKVELPLALPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGIILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|317181870|dbj|BAJ59654.1| hypothetical protein HPF57_0580 [Helicobacter pylori F57]
          Length = 227

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVIMHILNSYQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|299143999|ref|ZP_07037079.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518484|gb|EFI42223.1| 23S rRNA methyltransferase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 260

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 111/259 (42%), Gaps = 11/259 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LD 82
            ++++ +K ++S   K +  +  +  F+ G+  +  AL     KI   +A  +   + + 
Sbjct: 9   SKDNKSFKYLKSLLNK-KQRTLDKIFFVEGIKVLEEALKY---KIPMYIAVSDTFNKSIV 64

Query: 83  WDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            D  L +      +         ++   E   QG+      +    ++ + N +    LD
Sbjct: 65  TDLILKYQLNNVVIYYFKNTIFKQLTDTE-NSQGIIAYFKHIHINGINEIENGK-YAFLD 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G ++RSA AFS DGII +K      +  L +S   ++  +    + +  + L
Sbjct: 123 DLQDPGNVGGLIRSADAFSLDGIILSKNTVELYNPKLIRSTMASVFRVKLYIVESKNEIL 182

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            K+   GF+ I  S ++ K   +   ++   +  G E KG+  +    +    ++ M   
Sbjct: 183 -KLKEKGFKIISTSVENAKASYEYKFSENSVITFGNEAKGVSDEVFSYSDEKIYIPMSEE 241

Query: 260 IKALNVSNAAAVALYITQN 278
           I +LNV+ AA++  Y    
Sbjct: 242 INSLNVNVAASILFYEMNR 260


>gi|123966693|ref|YP_001011774.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123201059|gb|ABM72667.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 296

 Score =  179 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 118/269 (43%), Gaps = 19/269 (7%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +++ +     +++   K+ +SF +K  +T   +   + G H +   + + +    ++L T
Sbjct: 12  IENIYPKITSKSNALVKRFRSF-KKGSNTKDKDYFCIEGTHLIEEIIKSGNYP-SKILTT 69

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
           +  L + +  +    P  +  V  + +   V       G+A           +       
Sbjct: 70  EKWLYKNEELSQKFDPSLIIVVSEEVLASAVST-KNPDGVAALVQSSSILNFEINNEDDF 128

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS- 193
           ++VLD + DP N+G + R+A+A   + ++     +P     + +++SG++ H+P+ R   
Sbjct: 129 MLVLDRIQDPGNMGNLFRTALAAGVNKVLLAGGANP-LGQKVLRASSGSVFHLPFKRFDG 187

Query: 194 -------NLTDALQKMHSWGFQTIGLSSD------SKKPLEQEIKNDKIALILGAEGKGL 240
                  +L  +L +    GFQ I  SS       S+KP  +   +   ALILG EG G+
Sbjct: 188 GEEEIINSLLTSLDQFSKNGFQIISTSSHNKNPDKSQKPYWEIDWSKPTALILGNEGNGI 247

Query: 241 RPKTQETATSMAHLHMPGIIKALNVS-NA 268
             + QE  T    +    ++++LNV+  A
Sbjct: 248 HERIQEAFTETITIPHSELVESLNVACVA 276


>gi|294786867|ref|ZP_06752121.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|294485700|gb|EFG33334.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
          Length = 302

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 106/293 (36%), Gaps = 31/293 (10%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-- 68
           +I  +      +L      Y ++     ++R               +  AL      +  
Sbjct: 2   QIIRVDSLDDGRL----ALYTQLTEIQLRNRLEPDKGIFIAESPKVIDRALAAGVEPVSF 57

Query: 69  --FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
              +             D       PV     + + ++ G       L+     +L    
Sbjct: 58  LVEEAWLDGMKAEFDQVDRAWGSTVPVFVASAELLHRLTGYRLHRGALSAMHRWVLPTVE 117

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  + ++ + VL+++ D  N+GAI+RSA A   D ++ T   +       A+ + G +  
Sbjct: 118 EVCKEARRVAVLENIVDYTNVGAIMRSAAALDVDAVLVTPSCADPLYRRAARVSMGTVFQ 177

Query: 187 IPYIR------ISNLTDALQKMHSWGFQTIGL-----------------SSDSKKPLEQE 223
           +P+ R       +     +  +H  GF T+ +                   D+     ++
Sbjct: 178 VPWTRIGGDDSHAWPHPGIDLLHRLGFTTVAMALIDDSIGLDDLVRRIYDPDAAADATRD 237

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + DK+ALI G EG GL  KT  +      + M   + +LNV+ ++AVA Y T
Sbjct: 238 QRVDKVALIFGTEGDGLSRKTLASTDLTVKIPMSHQVDSLNVAASSAVAFYAT 290


>gi|289613400|emb|CBI59653.1| unnamed protein product [Sordaria macrospora]
          Length = 593

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 134/343 (39%), Gaps = 78/343 (22%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYK-KMQSFNQKSRHTSQPENL----------FLYGVH 55
           ++ E+  S +D+  +   R   D   + + F    R  + P++L          FLYG  
Sbjct: 226 QRPERRDSFRDTRSSTRERRETDRTPRRELFRDNDREETTPKSLSIPYTTAASQFLYGTS 285

Query: 56  TVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVPPQT-----IDKIVG 106
            V AAL    RK+++L     A +  LA+      L     V+ V         +DK+ G
Sbjct: 286 VVEAALQAARRKLYKLYIYAGANREKLAKDAAIQKLAQRNKVEIVFVNEDGLKMMDKMSG 345

Query: 107 KEAVHQGLALETAPLLSPTLDAVRN----------------------------------- 131
               H G  LE +PL  P + ++                                     
Sbjct: 346 SR-PHNGYILEASPLPQPPVISLGEVVEAETGQGTTGYKVVLGHQSHEEALINGKSDFVS 404

Query: 132 ------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   L++V+D + DP N+GAILRS        +  TKR S S + V  K+++GA E
Sbjct: 405 ASSTTHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRESASMTPVALKASAGASE 464

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGL------SSDSKKPLE-------QEIKNDKIALI 232
            +    + +L   LQ     G+           S + +K L+         ++ +   L+
Sbjct: 465 SLALFSVGHLPKFLQDSRENGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLRTNPCILL 524

Query: 233 LGAEGKGLRPKTQETATSMAHLH-MPGI--IKALNVSNAAAVA 272
           LG+EG+GL  + +  A    ++  M G   I +LNVS AA + 
Sbjct: 525 LGSEGEGLPGQIKSKADYEVNIPNMSGGTVIDSLNVSVAAGLL 567


>gi|224538883|ref|ZP_03679422.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519490|gb|EEF88595.1| hypothetical protein BACCELL_03779 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 227

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 6/208 (2%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+     +  L   K+         +     PV T   + +  + G       L     
Sbjct: 7   ALDAGYEPLALLCEQKHITGDAADIISRCGDVPVYTGGRELLATLTGYVLTRGVLCAMRR 66

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P      D  R+++ ++V+D V D  NIGAI RSA A   D ++ T+      +    + 
Sbjct: 67  PAPRTVEDTCRDARRIVVIDGVVDTTNIGAIFRSAAALGMDAVLLTRNSCDPLNRRAVRV 126

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALILGAE 236
           + G++  +P+   + L   L  +   GF+T  ++  D    +   +     ++A+++G E
Sbjct: 127 SMGSVFLVPW---TWLDGTLSDLARHGFRTAAMALTDDSISIADPVLASEPRLAIVMGTE 183

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G+GL P T   A  +  + M   + +LN
Sbjct: 184 GEGLPPDTIAAADYVVRIPMAHGVDSLN 211


>gi|317009469|gb|ADU80049.1| RNA methyltransferase [Helicobacter pylori India7]
          Length = 227

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VVYGKQVMMHLLNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLALPLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMQRDFDSLNVSVAAGILM 223


>gi|260063491|ref|YP_003196571.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
 gi|88782935|gb|EAR14109.1| putative rRNA methylase [Robiginitalea biformata HTCC2501]
          Length = 273

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 99/259 (38%), Gaps = 6/259 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            + + +++Q ++QKSR   +     L G   +  AL    R I  L      L      A
Sbjct: 11  QNPEIRQLQHWSQKSRDRRKSGVFVLEGYRELGLALQGGYR-IRTLYYCPEILGDERRQA 69

Query: 86  NLPHPFPVKTVP--PQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L        V   P+    +  +      + L E        L+    + L++V     
Sbjct: 70  -LSDRAGCSWVSLSPEVYSHLAYRGKTEGVIGLVEAREHRLQDLELEGKNPLILVAQAPE 128

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P N+GA+LR+A A S D +I         +  + +S+ G L  +P  + ++  +AL  +
Sbjct: 129 KPGNLGALLRTADAASLDAVIVADLKGDLYNPNVIRSSVGCLFTVPVAQ-ASTEEALSYL 187

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +        S       +Q       A+ +G E  GL       A +   + M G I +
Sbjct: 188 KARDIAVYAASLGGSVRYDQADYLGASAIAVGTEATGLTEAWTRQAEACVEIPMAGAIDS 247

Query: 263 LNVSNAAAVALYITQNHFA 281
           +NVS AAAV L+  +    
Sbjct: 248 MNVSVAAAVLLFEARRQRG 266


>gi|283769024|ref|ZP_06341930.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
 gi|283104381|gb|EFC05758.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
          Length = 235

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 117/278 (42%), Gaps = 45/278 (16%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+  ++ K+       + K R +HR +                    +   H +  A
Sbjct: 2   MESITSLQNRKVKIWTSLQHKKGRDSHRLF-------------------LVETEHLIEEA 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETA 119
                 +I Q + +      L              V    + K+ + +  +H+ + L   
Sbjct: 43  QKA---QILQTIISDQKGDIL--------------VTEAILKKLKISQSTIHR-IGLCQM 84

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P         +  + +++LD + DP N+G I+R+A +F  + +  ++    + +    ++
Sbjct: 85  PHFEK-----KEVKKVILLDEIQDPGNLGTIIRTAKSFGYEAVYCSENCCDAFNPKCVQA 139

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + GA+  IP  R  +L + +  +   G + +G S     PL++  K D IA++LG EG+G
Sbjct: 140 SQGAIFSIPVFR-EDLKNVISSLQERGIKVLGTSLQQSIPLKKVKKEDDIAILLGNEGQG 198

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++    E    +  + M G  ++LNV+ A A+ +Y+ Q
Sbjct: 199 VKGNLLELCDEITRIEMSG-FESLNVAVAGAILMYMFQ 235


>gi|256394616|ref|YP_003116180.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256360842|gb|ACU74339.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 272

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 92/245 (37%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQ 99
             ++       G   V  A +     + +L AT  A  R              +    P+
Sbjct: 27  FRAKQRLFLAEGPQAVREAADLDG-VLVELFATGEAAERYGEILAAAGKQGSKITIATPE 85

Query: 100 TIDKIVGKEAVHQGLALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +  +  +    QGL      L  P  +  A R  +L+ +L HV DP N G ++R A A 
Sbjct: 86  LLASL-SETVTPQGLIGVCRFLDVPLESFLAARAPKLVALLAHVRDPGNAGTVIRCADAA 144

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I T       +    ++++G+L H+P     +  +A+  + +   + +       
Sbjct: 145 GADLVIVTSESVDVYNPKAVRASAGSLFHVPVAVGVSAQEAVDMLRAAELRVLAADGGGA 204

Query: 218 KPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+ E+           + G E  GL       A     + + G  ++LN++ AAAV L
Sbjct: 205 ADLDDELDAGRLAAPTCWMFGNEAWGLPEALLALADEAVRVPIHGRAESLNLATAAAVCL 264

Query: 274 YITQN 278
           Y +  
Sbjct: 265 YSSAR 269


>gi|322378717|ref|ZP_08053148.1| SpoU methylase [Helicobacter suis HS1]
 gi|322380665|ref|ZP_08054817.1| rRNA methylase [Helicobacter suis HS5]
 gi|321146987|gb|EFX41735.1| rRNA methylase [Helicobacter suis HS5]
 gi|321148860|gb|EFX43329.1| SpoU methylase [Helicobacter suis HS1]
          Length = 228

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 8/228 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105
           + ++G   V   L +   ++  L   K    +   L       +   +  +  +    + 
Sbjct: 1   MIVFGKQVVLHMLTHYPNRVSVLYLAKEVDKKTFSLFRAHQREYQSQIINLDFKKAQAMA 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            K A HQG   E  P    TL  ++    ++VL  ++D  N+GA+ RS  A   +G+I  
Sbjct: 61  -KGANHQGFLAEVLPPQKSTLKDIKTLDKILVLCGLSDVGNVGALFRSVAALGFEGVIL- 118

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
             + P E   L +S+ GAL  +P+    N+ D + ++   G    G      + ++  + 
Sbjct: 119 DLHMPYEG--LVRSSLGALYDVPFCVCQNILDVICELKEAGVFCYGAHIRG-QDVKNAVF 175

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +AL LG+EG GL  +       + H+ M G + +LNVS A A+ +
Sbjct: 176 THPLALFLGSEGMGLHSRILNKMDQLLHIKMQGKMDSLNVSVAGAILM 223


>gi|307084225|ref|ZP_07493338.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu012]
 gi|308366170|gb|EFP55021.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           SUMu012]
          Length = 256

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 95/239 (39%), Gaps = 7/239 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V+AAL      + ++  T+ A  R +      H   V  V  +   
Sbjct: 21  RRRAGRFLAEGPNLVAAALARG--LVREVFVTEVAARRHELLLA-AHEASVHLVT-ERAA 76

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K +       GL        +   D +  S  L+ V   + +P N G ++R A A     
Sbjct: 77  KALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGAAA 136

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R     +    ++++G++  IP +   ++  A+  + + G Q +  + D +  L+
Sbjct: 137 VILAGRSVDPYNGKCLRASTGSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALD 196

Query: 222 QEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                  +  A + G E  GL  +    A    H+ M G  ++LNV+ AAA+ LY +  
Sbjct: 197 DADRLLAEPTAWLFGPEAHGLSAEIAALADHRVHILMSGGAESLNVAAAAAICLYESAR 255


>gi|254283647|ref|ZP_04958615.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
           proteobacterium NOR51-B]
 gi|219679850|gb|EED36199.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [gamma
           proteobacterium NOR51-B]
          Length = 250

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 9/241 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQL-LATKNALA---RLDWDANLPHPFPVKTVPPQTI 101
            + L LYG   V  AL + S     L LA+ N  A   +   D        ++    + +
Sbjct: 7   EKLLVLYGRKPVLEALMDASLDCRTLHLASSNRSAGILKEIVDYAKSRDILIREHTREAL 66

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-----LMVLDHVNDPHNIGAILRSAVA 156
            ++   +   QG+AL+       +++   ++ +     ++ LD V +P N+G I+RSAVA
Sbjct: 67  GRLSKNKKQDQGVALDIRCPSFMSIEQFLSAPIDSATRVLALDGVTNPQNVGMIIRSAVA 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               GI+  ++   S   ++ K+++G L   P I    L  AL++    G   + L   +
Sbjct: 127 SGIGGILYPRKGVASLGPLVIKASAGTLFKAPIISCETLAPALRQCLENGLDIVALDGAA 186

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              L  +  +     +LG E  G+   T+  AT    + M G +++LNV+  AA+  Y  
Sbjct: 187 PDSLFGDRPSRAAVYVLGGETHGVSDATRSLATRSLSIPMAGGVESLNVAVTAALIGYAA 246

Query: 277 Q 277
           Q
Sbjct: 247 Q 247


>gi|182439701|ref|YP_001827420.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326780365|ref|ZP_08239630.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468217|dbj|BAG22737.1| putative rRNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326660698|gb|EGE45544.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 281

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 94/245 (38%), Gaps = 12/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R        H     V     
Sbjct: 28  KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAF 157
             +   V +    QGL      L +P  + +     L+ VL +V DP N G +LR A A 
Sbjct: 88  DVLAD-VSQTVTPQGLIGVCRFLDTPFPEILAARPTLVAVLANVRDPGNAGTVLRCADAA 146

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I T       +    +++ G+L H+P      +  A+Q +   G + +       
Sbjct: 147 GADAVILTDASVDLYNPKSVRASVGSLYHLPVAVGVPVEQAVQGLRDAGVRILAADGAGA 206

Query: 218 KPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+ E+         A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV L
Sbjct: 207 ADLDDELDAGTMGTPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCL 266

Query: 274 YITQN 278
           Y +  
Sbjct: 267 YASAR 271


>gi|309792699|ref|ZP_07687150.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
 gi|308225248|gb|EFO79025.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
          Length = 267

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 100/257 (38%), Gaps = 9/257 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDW 83
           +   ++++   Q+ +   +  + F+ GV  V  A+      +  L+     L      D 
Sbjct: 8   NPSIRQIRVLRQR-KERERSGHFFVEGVRLVGEAVALG--MVETLVVAPELLTSPFGQDL 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVN 142
            A       +  V  +    I  KE   QGLA           D  + N+   + L    
Sbjct: 65  VAQQAGHTRMIEVSAEVFASISQKEG-PQGLAAVARQRWVNLADVRLTNAPGWVALLEPA 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+A A    G++     +        +++ GA+  +  +R +   +     
Sbjct: 124 DPGNLGTILRTADAVGASGVMLLDHATDPYDPAALRASMGAIFALQVVRAT-FAEFAAWK 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            + G   +G +  +    +  +    + L++G+E +GL P  Q     M HL M G   +
Sbjct: 183 RAQGIFLVGAADKAPTHYQDLVYPQPLVLLMGSERQGLSPDQQALCDQMVHLPMCGRSDS 242

Query: 263 LNVSNAAAVALYITQNH 279
           LN++ A  V LY   + 
Sbjct: 243 LNLAVATGVLLYELLSQ 259


>gi|118589655|ref|ZP_01547060.1| rRNA methylase [Stappia aggregata IAM 12614]
 gi|118437741|gb|EAV44377.1| rRNA methylase [Stappia aggregata IAM 12614]
          Length = 275

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 99/271 (36%), Gaps = 6/271 (2%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I   + +       ++   K+++    + +H SQ       G+   + AL       +  
Sbjct: 2   IEKRQGAVKQITSHSNPIVKEIKGLVAQRKHRSQSGLFVAEGLKLATDALEAGWGIRYLA 61

Query: 72  L---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           L   A  N +A+    A       +  V    +  +  K+     + +    LL P    
Sbjct: 62  LGPDARDNPVAQKAAAAAKARGALILEVSTAVMSAMTRKDNPQMVVGVYEQQLLGPRDIE 121

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              + L + LD V DP N+G I+R+  A    G++     +   +    ++  G+L H+P
Sbjct: 122 PSGTTLWVALDRVRDPGNLGTIIRTVDAVGGAGVMLVGDCTDPFAVEAVRATMGSLFHVP 181

Query: 189 YIRISNLTDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             ++    D  + + + W                     + + L++G E KGL       
Sbjct: 182 LAKLG--KDEFKSLAATWPGTVAATHLKGSVDYRTPDYAEPVLLVMGNEQKGLEDDMAAA 239

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++  +   G   +LN++ A  VALY  + 
Sbjct: 240 CPTLIRIPQVGQADSLNLAVATGVALYEIRR 270


>gi|288957949|ref|YP_003448290.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
 gi|288910257|dbj|BAI71746.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
          Length = 271

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 8/242 (3%)

Query: 39  KSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTV 96
           + R     + LF+  G   V + + +       LL  +  +  L+   A LP   PV T 
Sbjct: 22  RERDLVGRDGLFIAEGAVVVRSLVQSSRTLARSLLVAEKRVTALEPMLAALPPGTPVYTA 81

Query: 97  PPQTIDKIVGKEAVHQGLALETA----PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
               +D+I G   +H+G+         P  +  LDA      +++L  + +  N+G I R
Sbjct: 82  TQPVLDRIAGF-PLHRGILAVGERISIPSAADLLDACGPVARVVMLFGIGNHDNMGGIFR 140

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  D +I              + + GA   +P  R+    D L  +  + F+ + L
Sbjct: 141 NAAAFGADAVILDPGCCDPLYRKAIRVSVGATLLVPTARLDAGEDPLALLDRFRFEAVAL 200

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S    + L       + AL+ G+EG GL P     A     + M G   +LNV+  + + 
Sbjct: 201 SPAGAETLAALTPPRRAALLFGSEGPGLPPALLARA-RSVRIPMAGGFDSLNVATTSGIV 259

Query: 273 LY 274
           L+
Sbjct: 260 LH 261


>gi|283458458|ref|YP_003363084.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283134499|dbj|BAI65264.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 344

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 113/300 (37%), Gaps = 51/300 (17%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDA 85
           RD  K+++   +++         + G   V  AL    +K  +  +  T+ A  R +  A
Sbjct: 51  RDIAKLRTRAARTKK----GQFLVEGPQAVREALKAHLQKPILDAVYVTEAAFDRHEDIA 106

Query: 86  NLPHPFP------------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DA 128
            L                 ++ V  + ++ +       QG+    + ++  +      D 
Sbjct: 107 ELLEQVYGTPTPEEGRRVFMRVVTDEVLEAMADS-VSPQGIIA-VSFMVDASFSLLWGDG 164

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             N +L+ VL  V DP N G ILR A A   D +ITTK      +    +S +G+L H+P
Sbjct: 165 ALNPKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVP 224

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----------------------EIK 225
            I+   L D  + + S G   +         L++                          
Sbjct: 225 IIQGVQLEDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDL 284

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQNHFAK 282
           +     + G E +GL  + +  AT    + + G  ++LNV  AAAV LY   + Q   ++
Sbjct: 285 SKPTMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQRGVSR 344


>gi|134094575|ref|YP_001099650.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133738478|emb|CAL61523.1| tRNA/rRNA methyltransferase SpoU-like [Herminiimonas
           arsenicoxydans]
          Length = 265

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 101/260 (38%), Gaps = 9/260 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK+++     S+   +     L G+H   A L         + A++ AL   + 
Sbjct: 8   SRDNPLYKELKHLATSSQARRKAGRTLLDGIHLCEAYLQQVGLPPLCI-ASETALLNSEV 66

Query: 84  DANLPHPFPVKT---VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              +       T   V P  +   + +  V  G+ +          +  R  Q  ++LD 
Sbjct: 67  TVIVQQCIHSHTQCIVLPDALFHALSQ--VEHGVDILFVIDTPELTEPQRLLQSAVLLDR 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N G+I+RSA A     +  +   + + S  + ++  GA   +      +L   + 
Sbjct: 125 VQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVMRAGMGAHFLMEIFENVDLEALIA 184

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +        I  SS ++K L        +A + G EG+G+       AT    +   G I
Sbjct: 185 R---ADIPVIATSSHAEKRLYDLDLTQPVAWLFGHEGQGVTEHLLALATHQITIPHLGAI 241

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV+ ++AV  +      
Sbjct: 242 ESLNVAASSAVCFFEQVRQI 261


>gi|325132246|gb|EGC54940.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190]
 gi|325136323|gb|EGC58931.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579]
 gi|325138170|gb|EGC60741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902]
 gi|325208131|gb|ADZ03583.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           NZ-05/33]
          Length = 261

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 96/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +    +  +   +  +   +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGMPV-GVYIPEGKMPS-EEIR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   + +V    + KI         LAL   PL       + +    +VLD V 
Sbjct: 66  RLRAVVPEGRIFSVSDGILKKISSLSCADDILALIDIPLGG----TLPDKGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++L   L + 
Sbjct: 122 DPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQADLEIWLARY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E      A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|87312089|ref|ZP_01094195.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
 gi|87285185|gb|EAQ77113.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
          Length = 269

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 105/277 (37%), Gaps = 18/277 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E+I S+++              K  S  ++ R   Q     + GV  +  AL      + 
Sbjct: 3   ERITSVQNPRI-----------KAASKLRQRRARQQQGRTIIDGVREIDRALATG-FPLL 50

Query: 70  QLLATKNALARLDWDANLPH-----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
           +L      L   +  A            +  +     +K+   E     +A+   P    
Sbjct: 51  ELFVCDELLVGEEAAALRQRISQDRELNLFEITRDVCEKLSFGERAEGVIAVANYPDTML 110

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
             D + +  L++VL+ V  P N+GAILR+A A   D +I     +   +    +++ G +
Sbjct: 111 DHDQLSDRPLIVVLEGVEKPGNLGAILRTADAVGADCLIAADARTDIFNPNAIRASLGTI 170

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P    +   + L  + + G Q      +     EQ       ALILG+E +GL  + 
Sbjct: 171 FAVPTFEAT-TAETLAFLRAAGAQMFAARVEGAVSYEQVELIGPTALILGSEAEGLSDRW 229

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                +   L M GI  +LNVS  AAV LY      A
Sbjct: 230 LADDVTNIRLPMRGIADSLNVSTTAAVLLYEANRQRA 266


>gi|294084964|ref|YP_003551724.1| tRNA/rRNA methyltransferase SpoU [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664539|gb|ADE39640.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 307

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 112/283 (39%), Gaps = 19/283 (6%)

Query: 12  IFSLKDSHYAKL-----RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           I  +K++H+  +        + + K +++ +++ ++  Q       G    + A+     
Sbjct: 29  IALMKNNHHVTIPAPITSTANAEVKFLRALHER-KYRRQSGWFLAEGTRICNEAVALGW- 86

Query: 67  KIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
            + +L            R   DA          +  + + +I  K+   Q + L      
Sbjct: 87  DMHRLAFLAGRDNETHVRKLLDALDRADGRALPMSEKLLQRISRKD-NPQ-MLLGAFRQK 144

Query: 123 SPTLDAVRN--SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              LDAV    S+  + LD V DP N+G I+RSA A    GII     +   S    +++
Sbjct: 145 WTDLDAVTPDLSRPWVALDRVRDPGNLGTIMRSADAAGAKGIILIDDCTDPYSVEAVRAS 204

Query: 181 SGALEHIPYIRISNLTDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
            GA+ ++  ++  N +D +     W     Q IG +  +         +  + +++G E 
Sbjct: 205 MGAIFNVEIVQC-NQSDFVAFTQQWTNQNGQIIGTALPASVDYRDADYSGALMILMGNEQ 263

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            GL P   +  T +  L M G   +LN++ A  V LY    + 
Sbjct: 264 AGLPPSLMQLCTQLIRLPMLGRSDSLNLAVATGVTLYEVLRNR 306


>gi|332521021|ref|ZP_08397481.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043551|gb|EGI79747.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 266

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 11/260 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARL 81
            +   K++     KSR   +     + G+  ++ AL         L   +    N L  L
Sbjct: 10  QNTLVKQIVLLKDKSRERKKTGLFIVEGLREITLALKGNYNLKTILFYPELCDVNTLESL 69

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDH 140
                      +  +      KI  +E     +A  +T       L     + L++V + 
Sbjct: 70  GNL-----NAEIIEISKDVYTKIAYRETTEGIIAIAKTKENNFENLSFNTKNPLILVAEA 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
              P NIGAILR+A A + D +I     +   +  + +S+ G L         +    + 
Sbjct: 125 PEKPGNIGAILRTADAANIDAVIIANPKTDLYNPNIIRSSVGCLFTNQIA-TGSTEAIIN 183

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            ++S G           +   ++      A+++G E  GL    +  A     + M G I
Sbjct: 184 FLNSKGINIYAAILQESQEYHKQDFTTPTAIVVGTEATGLSNYWRNAAKKNIKIPMQGAI 243

Query: 261 KALNVSNAAAVALYITQNHF 280
            ++NVS AA + ++  +   
Sbjct: 244 DSMNVSVAAGILIFEAKRQR 263


>gi|296118312|ref|ZP_06836893.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968870|gb|EFG82114.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 266

 Score =  179 bits (455), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 108/254 (42%), Gaps = 9/254 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           ++      ++     E L +   H V + L +    +  ++   NAL         P   
Sbjct: 10  RLDDIRDLNKSDKSGEGLVIAEGHLVVSRLVSSRFPVRCIVGFANALKHYVETYGEP-GC 68

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAI 150
           P+  V   T+ ++VG + +H+GL      +    + +A+ +++ ++VL+ V D  NIG++
Sbjct: 69  PMYEVDRATLAEVVGFD-MHRGLVAAADRVAPLEVSEAISDAKTVVVLEGVGDHENIGSL 127

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKMHSWG 206
            R+A     D ++     +        + + G +  +P+ R           L  +   G
Sbjct: 128 FRNAAGMDVDAVLLGAGAADPLYRRSVRVSMGHVLRLPFARFDGGFTTWQRNLDLLADAG 187

Query: 207 FQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           F  + L+ D++     E    +DK+AL++GAEG GL           A + M     + N
Sbjct: 188 FHLVSLTPDNEAVHLAEALAGHDKVALMVGAEGPGLTEHAMRATHVRARIPMAEGTDSFN 247

Query: 265 VSNAAAVALYITQN 278
           V+ AAA+A Y  Q 
Sbjct: 248 VATAAAIAFYERQR 261


>gi|59801230|ref|YP_207942.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|194098554|ref|YP_002001616.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|240115611|ref|ZP_04729673.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|260440578|ref|ZP_05794394.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268601289|ref|ZP_06135456.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291043881|ref|ZP_06569597.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399091|ref|ZP_06643256.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|59718125|gb|AAW89530.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|193933844|gb|ACF29668.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
 gi|268585420|gb|EEZ50096.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|291012344|gb|EFE04333.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610505|gb|EFF39615.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
          Length = 261

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 97/263 (36%), Gaps = 18/263 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDW 83
           N+   + +     + +   Q     L GVH +   L +  + +   +      +   L  
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMPSEEVLKL 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVL 138
            A LP    + +V    + KI           L  A  +   +D      + +     VL
Sbjct: 68  TAVLPED-GIFSVSDGILKKISS---------LSCADDILTLIDIPLGGTLPDKGDCAVL 117

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L   
Sbjct: 118 DGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLEIW 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L       F T  L  + +  L  E   +  A + G EG G+     + A     + M  
Sbjct: 178 LAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHD 236

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             ++LNV+ AA + L+      A
Sbjct: 237 ATESLNVAMAATICLFEQMRQRA 259


>gi|225872630|ref|YP_002754087.1| RNA methyltransferase, TrmH family protein [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium
           capsulatum ATCC 51196]
          Length = 283

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 113/275 (41%), Gaps = 11/275 (4%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQL 71
             + +   + R N R  +   +F+   +   +   + L G   ++ AL +      +F  
Sbjct: 7   RARTTRIVQSRHNSRVKELRAAFSHPGK--GERGYIALEGELLLAEALRSGLAPAAVFIR 64

Query: 72  LATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTL 126
                AL R+   A          +  +P       V  E+  QG+A   AP       L
Sbjct: 65  SGQWEALERVAAKAPSRAALDTAEILELPADIFSSAVDTES-PQGIAALLAPPRFDWDDL 123

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                  LL+V   + DP N+G ++RSA AF   GI+T        +A + ++++G++  
Sbjct: 124 FPAHAPALLLVTASLQDPGNLGTLIRSAEAFGASGILTLPGTVNLWNAKVVRASAGSVFR 183

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P +      + L ++ + G      ++D   P  Q       AL++G EG GL P   +
Sbjct: 184 MPVVARCE-EEVLARLAAQGVTLFATTADGDLPATQAALTQPCALLIGNEGAGLTPHLLQ 242

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            A +   +  PG +++LN + A ++ LY      A
Sbjct: 243 AADARLAIPTPGPVESLNAAIAGSILLYEASRQRA 277


>gi|225181655|ref|ZP_03735095.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
           1]
 gi|225167636|gb|EEG76447.1| tRNA/rRNA methyltransferase (SpoU) [Dethiobacter alkaliphilus AHT
           1]
          Length = 264

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 9/257 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANL 87
           Y K+    +K +   Q   + L G   +  A+    R + +++  +  L   ++     L
Sbjct: 11  YVKLYRSLEKRKIRIQQNLVPLEGEKLIRDAIE--RRVLPEVVYLREGLTPEEFPFLQAL 68

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPH 145
               PV ++  +  D+        QG+    AP     L  +  +   LL+V D V DP 
Sbjct: 69  ESQVPVLSIAEKLFDR-TAFTDSPQGILA-VAPRPKSDLTDLFVKKPALLLVADGVQDPG 126

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G +LRSA A   DG I       + +    ++A GA   +  +  +N  D L  +   
Sbjct: 127 NLGTMLRSAAAAGADGAILLPGTVDATNPKALRAAMGAYFALSVVE-TNHQDCLSALAGH 185

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +  ++ ++   ++   N  +A+++G EG G+ P   E A S   + M G +++LN 
Sbjct: 186 GVSLVTTAARAEVAYDRYDWNTPVAVVIGNEGSGVSPAMAEAAKSRVSIPMAGAVESLNA 245

Query: 266 SNAAAVALYITQNHFAK 282
           + A +V  +       K
Sbjct: 246 AIAMSVIFFEAARQRRK 262


>gi|298531014|ref|ZP_07018415.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509037|gb|EFI32942.1| RNA methyltransferase, TrmH family, group 3 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 240

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 103/235 (43%), Gaps = 12/235 (5%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV--KTVPPQTIDKI 104
           ENL L G   V  AL      I  +L  K     LD   +      V  K VP Q + ++
Sbjct: 3   ENLVL-GKKPVMEALEENPEHIDLVLVKKPVPRGLDPVISRCRQLHVRFKLVPDQELQQM 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFS 158
               A  QG+A          LD + N+       +L++LD V DP N+G + R+  A  
Sbjct: 62  ---GAARQGIAARLRMQTLVDLDLLLNNTTRAVFPVLLLLDQVQDPGNLGTLARTLAALG 118

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             GII  +  S        K+++GAL  I   +++NL   L  +   GF     + D  +
Sbjct: 119 GAGIIIPRDRSAPLGPGAMKASAGALNRIGVAQVTNLARTLDHIDQAGFNIYAATMDQGQ 178

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + ++       L+LG E KG+RP   +      H+ M G + +LNV++A A+ L
Sbjct: 179 SVLEQTFVFPAVLVLGGEEKGIRPNVLKRCPGKIHIPMAGGMDSLNVAHAGALIL 233


>gi|87310366|ref|ZP_01092496.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
 gi|87286865|gb|EAQ78769.1| putative rRNA methylase [Blastopirellula marina DSM 3645]
          Length = 265

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 99/241 (41%), Gaps = 10/241 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           SR       L       V   L +   ++  LL   + L ++          P+  +P  
Sbjct: 23  SRAYRATGLLIAESRFLVERLLAS-ELEVESLLV--DDLTKVPTLPAGREATPIYCLPRD 79

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAV 155
            + ++VG    H+G+       L   L  V    R    LMV   V DP N+G+++R+  
Sbjct: 80  QLQELVGFN-FHRGVMACARRPLLSDLQQVAWPDRERLTLMVAAQVVDPENLGSLIRAGS 138

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  D I+   R     S    + ++G    IP +  SNL D L    S GFQ I    D
Sbjct: 139 AFGADAILMDDRCGDPYSRRALRVSTGHAFKIPIVETSNLLDQLNVARSLGFQLIATVLD 198

Query: 216 -SKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            S  PL++E    D+ AL+ G EG GL       A     + M     +LNVS AA V L
Sbjct: 199 ESAIPLKKETARHDRTALLFGNEGFGLEADLTAMADRCVTIPMSRGSDSLNVSMAAGVFL 258

Query: 274 Y 274
           Y
Sbjct: 259 Y 259


>gi|57168674|ref|ZP_00367806.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
           RM2228]
 gi|305432697|ref|ZP_07401857.1| RNA methyltransferase [Campylobacter coli JV20]
 gi|57019955|gb|EAL56635.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter coli
           RM2228]
 gi|304444206|gb|EFM36859.1| RNA methyltransferase [Campylobacter coli JV20]
          Length = 227

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    +  +       F +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILERHKELINELYLAKECD-KETFKKIASSGFKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L  ++  + + +L  ++D  NIGAI+R+A A   DG+I     
Sbjct: 59  GNHQGFLLDIKEYEFKDLHTLKKGEFIAILYGISDVGNIGAIVRTAYALGVDGLIFIGER 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   +     +++   L ++   GF+    +S  K+    ++   K
Sbjct: 119 LAMEG--VIRTSSGAALDLEIALNNDIFTVLNELKQVGFKLFASASGGKQIHHYKVDKGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ALILG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KALILGSEGLGLSAKIIKKCDECVGIEMKNNFDSLNVSVAFAILC 221


>gi|315452502|ref|YP_004072772.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179]
 gi|315131554|emb|CBY82182.1| 23S rRNA methyltransferase [Helicobacter felis ATCC 49179]
          Length = 227

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 8/228 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105
           + ++G   +   L +   +I +    K    +   L       +   +  V  +    + 
Sbjct: 1   MIVFGKQVILHLLKHHPSQILEFYLLKEIDKKTFSLLQAHQQKYQSALLRVDAKKAQAMA 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            K   HQG   +  P  S  L  +++   L+VL  ++D  N+GA+ RS      DG+I  
Sbjct: 61  -KGGNHQGWLAKVLPPKSSALGVLKSLDKLLVLCGLSDVGNVGALFRSVACLGFDGVIMD 119

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K         LA+++ GAL  +P+    N  D LQ +        G   +  + + Q + 
Sbjct: 120 K---ALPFEGLARASMGALYDVPFCVCPNPLDILQGLKDVRVHCYGAHIEG-QNVRQVVF 175

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              +A+ LG+EG GL PK      ++ ++ M G I +LNVS A A+ +
Sbjct: 176 KPPLAIFLGSEGAGLAPKLVRRMDTLVNIGMEGKIDSLNVSVAGAILM 223


>gi|83749783|ref|ZP_00946757.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|207743229|ref|YP_002259621.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|83723540|gb|EAP70744.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|206594626|emb|CAQ61553.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 259

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++   +     L G+H V+A L+       Q L ++  LA  + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTP-AQCLVSERHLAHPEV 64

Query: 84  DANLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              L    P   +     D +      V  G+ L             R     ++LD + 
Sbjct: 65  APLLARVDPQHVIL--LADSLFAPLTTVVNGIDLMAVIDTPEGHLPHRIEHDCVILDGIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          ++
Sbjct: 123 DAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNIVEHCTFESMHARL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           H      +  SS ++  +        +  + G EG G+  +     T+   +  PG +++
Sbjct: 183 H---VPLLATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMES 238

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ AAA+ L+      
Sbjct: 239 LNVAAAAAICLFEAVRQR 256


>gi|315655513|ref|ZP_07908412.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490168|gb|EFU79794.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 275

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 106/260 (40%), Gaps = 17/260 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLP 88
            +K+   +++S          + G   VS  L +  +  +  L  T+   A         
Sbjct: 16  IRKVAGLSRRSARLR-SGMTRVEGPQAVSELLRSAPQGAVTDLYVTEAGAATRPELLEFA 74

Query: 89  H------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     + TV PQ  +K +   A  QG          P++       L ++L    
Sbjct: 75  QSTVSAGGLHIHTVSPQV-EKTLSDAA--QGWIAVARFEAFPSVTGSPEGNLALILPATQ 131

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N G ++R A A     +   +  + + S  + +++ G++ H+P  R  +L   ++ +
Sbjct: 132 DPGNAGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVPTPRFQDLAAVVKAL 191

Query: 203 HSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQET-ATSMAHLHMP 257
            + G+  +G S      L         N K+A ++G E  GL   T+E+    +  + M 
Sbjct: 192 RAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHGL-DATEESWCDVLVSIPMF 250

Query: 258 GIIKALNVSNAAAVALYITQ 277
           G  ++LNV++AA + L+++ 
Sbjct: 251 GRAESLNVTSAATLCLWMSA 270


>gi|268608876|ref|ZP_06142603.1| RNA methyltransferase, TrmH family [Ruminococcus flavefaciens FD-1]
          Length = 259

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 102/258 (39%), Gaps = 8/258 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K  Q  +   +   Q     L G+     AL + S  +  L+ T+NA ++   
Sbjct: 7   SKDNPTVKLYQKLSSSKKERLQYGLFVLEGLRITEDALRDGS--VSHLILTENAYSKTAD 64

Query: 84  DANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           +          V  +  +  ++I   ++  QG+      + S    A  +    +VL  +
Sbjct: 65  ELLQADLRDTKVLVISNELGNRIASTDST-QGVFA-ICRIPSGRTPAFCDDGRYVVLYGL 122

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A   +G+I +       S  + +S  G++  +    I++       
Sbjct: 123 QDPGNVGMIIRTADALGINGVILSGSC-DLYSPKVIRSTMGSVFRMAVSVINDTDALFAL 181

Query: 202 MHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +   G ++     D     + +     + A+ +G EG GL        T    + M G I
Sbjct: 182 LEENGVESSAAVIDKDAVKVTECSFTGRQAVFIGNEGNGLPADVAHRCTRRVTIPMSGNI 241

Query: 261 KALNVSNAAAVALYITQN 278
            +LN + AA + ++  + 
Sbjct: 242 NSLNAAMAAGILMWELKK 259


>gi|210134755|ref|YP_002301194.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
 gi|210132723|gb|ACJ07714.1| 23S rRNA methyltransferase [Helicobacter pylori P12]
          Length = 227

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +      P  +K V  +    +  +  
Sbjct: 4   VVYGKQVIMHILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-RGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLATSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLIYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 223


>gi|169629410|ref|YP_001703059.1| tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC 19977]
 gi|169241377|emb|CAM62405.1| Possible tRNA/rRNA methyltransferase [Mycobacterium abscessus]
          Length = 250

 Score =  179 bits (454), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 101/243 (41%), Gaps = 9/243 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +     +       G + V AAL + +  + ++ AT  A+ R     +L    PV+ V  
Sbjct: 9   RPAARRRAGLFLAEGPNLVEAALRSGA--VERIFATDAAIERF---VDLLAEAPVRRVT- 62

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           +   K +       GL  +   ++S       R+ + ++V   +++P N G ++R A A 
Sbjct: 63  ERAAKALSDTVTPVGLVAQCRTVVSTWSQVTARSPRFVIVAVDISEPGNAGTLIRVADAM 122

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++         +    ++++G++ +IP +   ++      +   G   +  + D  
Sbjct: 123 GADAVVLAGNSVDPFNGKSLRASAGSIFNIPVVPEGDVGAIAADLAQTGVALLATTLDGD 182

Query: 218 KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             L++         A   G E  GL   T   AT   ++ M G  ++LN+++AA++ LY 
Sbjct: 183 LSLDEADAVLAGPCAWFFGNEAHGLDGATAALATHRINIPMRGGAESLNLASAASICLYA 242

Query: 276 TQN 278
           T  
Sbjct: 243 TAR 245


>gi|304389322|ref|ZP_07371287.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327440|gb|EFL94673.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 275

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 104/260 (40%), Gaps = 17/260 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLP 88
            +K+   +++S          + G   V+  L+  P   +  L  T+   A         
Sbjct: 16  IRKVAGLSRRSARLR-SGLTRVEGPQAVTELLHCAPQGAVTDLYVTEAGAATRPELLEFA 74

Query: 89  H------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     + TV PQ    +       QG          P++       L ++L    
Sbjct: 75  QSTVSAGGLHIHTVSPQVEKALSDAA---QGWIAVARFEAFPSVTGSPEGSLALILPATQ 131

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R A A     +   +  + + S  + +++ G++ H+P  R  +L   ++ +
Sbjct: 132 DPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVPTPRFQDLAAVVKAL 191

Query: 203 HSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQET-ATSMAHLHMP 257
            + G+  +G S      L         N K+A ++G E  GL   T+E+    +  + M 
Sbjct: 192 RAEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHGL-DATEESWCDVLVSIPMF 250

Query: 258 GIIKALNVSNAAAVALYITQ 277
           G  ++LNV++AA + L+++ 
Sbjct: 251 GRAESLNVTSAATLCLWMSA 270


>gi|295425288|ref|ZP_06817991.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
           11664]
 gi|295065064|gb|EFG55969.1| TrmH family RNA methyltransferase [Lactobacillus amylolyticus DSM
           11664]
          Length = 254

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 10/241 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H     L    RK   LL T  AL + + +A +        +  + I
Sbjct: 23  YREETGLYLIEGFHLFEETLKAN-RKFIYLLGTDEALNKAE-EAGVSLDAKNVILINKAI 80

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + +      Q +       ++   D   N    ++LD++ DP N+G I+R+A A   +G
Sbjct: 81  ARHLSSTKNSQEIFAVLK--IAQPKDFSFNYGKWVLLDNLADPGNVGTIIRTADAAGFNG 138

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPL 220
           ++ +       +    ++  G+  HI  I I +LTD + ++ +          D + K L
Sbjct: 139 VVLSPESVDLYNPKTQRAMQGSQFHIDII-IKDLTDVITQLEASDIPVYASMLDKTAKKL 197

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               K  ++ L++G E  G+       + +  ++ + G  ++LN + AA + +Y    HF
Sbjct: 198 PDFEKVAQLGLVIGNEAHGVSDFIANLSDTKLYIPIFGQAESLNAAVAAGIMIY----HF 253

Query: 281 A 281
           A
Sbjct: 254 A 254


>gi|298346967|ref|YP_003719654.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|315656580|ref|ZP_07909467.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298237028|gb|ADI68160.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|315492535|gb|EFU82139.1| TrmH family rRNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 275

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 104/260 (40%), Gaps = 17/260 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLP 88
            +K+   +++S          + G   V+  L+  P   +  L  T+   A         
Sbjct: 16  IRKVAGLSRRSARLR-SGLTRVEGPQAVTELLHCAPQGAVTDLYVTEAGAATRPELLEFA 74

Query: 89  H------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     + TV PQ    +       QG          P++       L ++L    
Sbjct: 75  QSTVSAGGLHIHTVSPQVEKALSDAA---QGWIAVARFEAFPSVTGSPEGSLALILPATQ 131

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ++R A A     +   +  + + S  + +++ G++ H+P  R  +L   ++ +
Sbjct: 132 DPGNVGTLIRLADACGASTVFMGQDCADATSPKVIRASVGSVFHVPTPRFQDLAAVVKAL 191

Query: 203 HSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQET-ATSMAHLHMP 257
            S G+  +G S      L         N K+A ++G E  GL   T+E+    +  + M 
Sbjct: 192 RSEGWTIVGTSLSGDVMLTPVTAGTWSNKKVAWVMGNEAHGL-DATEESWCDVLVSIPMF 250

Query: 258 GIIKALNVSNAAAVALYITQ 277
           G  ++LNV++AA + L+++ 
Sbjct: 251 GRAESLNVTSAATLCLWMSA 270


>gi|213966333|ref|ZP_03394515.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
 gi|213951039|gb|EEB62439.1| 23s ribosomal rna methyltransferase [Corynebacterium amycolatum
           SK46]
          Length = 276

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 103/250 (41%), Gaps = 12/250 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTV 96
           ++    +     + G ++V AA+   +  + ++  T  A  +        L      K+V
Sbjct: 27  RAAKRKKAGRFLVEGFNSVDAAIRAEA--VVEIFVTAPAAEQFCELLTGYLESGTQRKSV 84

Query: 97  P--PQTIDKIVGKEAVHQGLAL-----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                +  + + +     GL         +  L   ++  + S  L++    NDP N+G 
Sbjct: 85  SLIDDSAARSLSETVTTTGLFAVCDTGAVSTSLEEAIEVGKQSGCLVIPVECNDPGNVGT 144

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R   A     +I         ++   +S++G++ H P  R  ++   ++++   GF T
Sbjct: 145 IVRMTDALGAGAVILAGDSVDPLNSKAVRSSAGSVFHTPVARERDIDVVVERVREAGFTT 204

Query: 210 IGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +  + D    L    + +  +A + G E  GL  +   +A +   + + G  ++LN++ A
Sbjct: 205 LATAMDGALTLGVDALPDGPVAWLFGNEAHGLSEEITASAGASVAIPIKGEAESLNLATA 264

Query: 269 AAVALYITQN 278
           AA+ L+ T  
Sbjct: 265 AAMCLWETVR 274


>gi|218297027|ref|ZP_03497704.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
 gi|218242582|gb|EED09119.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
          Length = 262

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 103/255 (40%), Gaps = 8/255 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K + +  ++ +   +     + G   V  AL    + +  LL       R      
Sbjct: 8   NPRVKALAALKER-KERERVGLFLVEGRREVERALQAGLKPVTVLLG-----PRATPAEE 61

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V  +  + + ++  +E   Q +A+   P  +     +    L++VL  +  P N
Sbjct: 62  ALAQGEVLRLSEEALKRVSSRENPAQVIAVFPIPRRALKEVRLPQDPLVLVLLGLEKPGN 121

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAILRSA       ++  +      S  + ++++G +  +P   ++   +A + +   G
Sbjct: 122 LGAILRSADGAGAHLVLVAEG-VDLYSPQVIRNSTGVVFSLPVFPVAE-EEAARFLEEKG 179

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +  +   ++   +E     +A +LGAE +GL     + A +   + M G   +LNV+
Sbjct: 180 LYPVAATPRGERVYWEEDYRRGVAFLLGAEDRGLPEVWLKRAQARVRIPMRGRADSLNVA 239

Query: 267 NAAAVALYITQNHFA 281
            +AA+ LY      +
Sbjct: 240 VSAALLLYEALRQRS 254


>gi|225024569|ref|ZP_03713761.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
           23834]
 gi|224942720|gb|EEG23929.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
           23834]
          Length = 258

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 11/258 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +    + +R   +     L GVH +SA L     ++ Q+    + + + +   
Sbjct: 8   QNPTLKHLAKLLRSARARRESGQAVLEGVHLLSAYLQAGG-QVLQVYVPASKMQQPETAR 66

Query: 86  NLPHPFPVKTVPPQ--TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            L    P + V      + KI       +  AL   P   P  DA  +    +VL+ + D
Sbjct: 67  LLSQLSPERVVQTAGAALQKITSLSDAEEITALIALPPTEP-FDAEAD---CVVLERIQD 122

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIG ILRSA A     ++ +   + + S  + ++  GA   +      +L    ++ H
Sbjct: 123 PGNIGTILRSAAAAGVGQVVLSADCADAWSPKVLRAGMGAHFALRLFVEPDLAAWRERCH 182

Query: 204 SWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                 +  +   +   L         A + G EG G+       A+ + H+ M    ++
Sbjct: 183 ---VPLLATALHRNSVSLYDCDLRAPAAWLFGNEGAGVSETMLAAASRLVHIPMAVQTES 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ AA V L+      
Sbjct: 240 LNVAMAATVCLFEQMRQR 257


>gi|16125439|ref|NP_420003.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221234182|ref|YP_002516618.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|13422511|gb|AAK23171.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220963354|gb|ACL94710.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 263

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 90/239 (37%), Gaps = 7/239 (2%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTV 96
           R   +   LFL  G+  V  A++        +     A     +    A L     V  V
Sbjct: 23  RKEREDSGLFLAEGLKIVIEAIDCGHAPKIVMYGPDAADHPMLKKAVAACLKAGGEVIEV 82

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNIGAILRSAV 155
             + ++K+  ++   Q +      + +P    V   +   + +  V DP N+G ++R+A 
Sbjct: 83  NREILEKVSRRD-NPQAVVAVFKQVFTPLSAIVPESAPCWVAMQAVRDPGNLGTVIRTAD 141

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A  C G+I         S    ++  G++  +   + + + + L    +W    +G    
Sbjct: 142 AAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAKAT-IPEFLAWRETWPGSVVGTLLT 200

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    +         +++G E +GL P+          + M G   +LN+S A  + +Y
Sbjct: 201 ATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNVKIPMRGRADSLNLSVATGIMIY 259


>gi|38233380|ref|NP_939147.1| putative methyltransferase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199640|emb|CAE49299.1| Putative methyltransferase [Corynebacterium diphtheriae]
          Length = 298

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 17/265 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +   + +         +   G   V   L +    +  L+   N L +L  + +L 
Sbjct: 33  DFRDLNHSDNRPDLPGGKGLVIAEG-SLVIPRLVDSRFPVRCLVGFPNKLEKLLANVHLR 91

Query: 89  H---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDP 144
                 PV +V  +T+ ++ G + +H+GL      +   ++  A+  ++ +++L+ V D 
Sbjct: 92  AQLADVPVFSVDRETLAQVAGFD-MHRGLLASADRVAGMSIAQAIDGARTVVILEGVGDH 150

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQ 200
            NIG++ R+A     D ++     +      + + + G +   P+       +     LQ
Sbjct: 151 ENIGSMFRNAAGMGVDAVLFGNGCADPLYRRVVRVSMGHVLRTPFAHFGGKSTTWQRELQ 210

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQETATSMAH 253
           ++   GF  + L+ + +     +   D       K+AL++GAEG GL           A 
Sbjct: 211 ELRDAGFHIVSLTPNPQADHLADALVDANGAPYAKVALLVGAEGPGLTEHAMRATDQRAR 270

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + M     +LN++ +AA+A Y    
Sbjct: 271 IPMASGTDSLNLATSAAIAFYERDR 295


>gi|317179082|dbj|BAJ56870.1| hypothetical protein HPF30_0773 [Helicobacter pylori F30]
          Length = 227

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVLMRILNSYQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+  L  V+ +Q L+VL  + D  NIG I RSA     DGII      
Sbjct: 62  NHQGVLAKVELPLALPLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGIILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|163756791|ref|ZP_02163900.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
 gi|161323180|gb|EDP94520.1| 23S rRNA methyltransferase [Kordia algicida OT-1]
          Length = 268

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 100/260 (38%), Gaps = 6/260 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDW 83
            +   K +    +KSR   +     L G   ++ AL   +  I  LL      +  R+  
Sbjct: 9   QNTTIKHILQLQEKSRSRKKEGKCILEGFRELTLALE-GNYAIDTLLFYPEICSYERIQE 67

Query: 84  DANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHV 141
                   P    +  +   KI  + +    LA+ +T      T+     + L++V +  
Sbjct: 68  LLATAKNTPECIEISKEVYQKIAYRGSTEGVLAIIQTKEHSLKTITFHNKTPLILVAEAP 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A + D +      +   +  + +S+ G +       + +  + +  
Sbjct: 128 EKPGNIGALLRTADAANIDAVFIANPKTDLYNPNIVRSSVGCVFTTQIA-MGSTAEIISF 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +          +  + +    +      A+++G E  GL  +    +T    + M G I 
Sbjct: 187 LQEKDIAIYCAALTASEHYHLQNYQKATAIVVGTEATGLSDEWLNNSTQNIIIPMQGKID 246

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++NVS AAA+ ++  +   +
Sbjct: 247 SMNVSVAAAIVIFEAKRQRS 266


>gi|222824411|ref|YP_002575985.1| rRNA methyltransferase, TrmH family [Campylobacter lari RM2100]
 gi|222539632|gb|ACM64733.1| conserved hypothetical protein, probable rRNA methyltransferase,
           TrmH family [Campylobacter lari RM2100]
          Length = 226

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L     KI ++   K    + ++         +K +  +T   +  + 
Sbjct: 1   MIVYGKQVFFYILEKHKEKIKEIYLAKEC-EKANFSKIAKASKKIKKLDFKTAQSLA-RG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  +E       + ++++    +++L +++D  NIGAI+RSA A   DGII   + 
Sbjct: 59  GNHQGFLMEIDEFEFSSFESLKEKDFIVILYNISDVGNIGAIVRSAYALGADGIILVAKS 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              +   + +++SGA   +  +   ++   + ++   GF     S+     +      DK
Sbjct: 119 VAMDG--VIRASSGAALDMKIVLNDDILSMINELKQKGFYIYA-SASGGSDIHTIKTKDK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             LI+G+EG G+ PK  +       + M     +LNVS A A+  
Sbjct: 176 KVLIMGSEGFGIAPKVLKKCDECVGIKMHNDFDSLNVSAAFAILC 220


>gi|298246477|ref|ZP_06970283.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297553958|gb|EFH87823.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 270

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 9/252 (3%)

Query: 34  QSFNQKSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLD----WDANLP 88
           Q    K+     PE+L  L G+  + AAL     ++  L      L   D     +  + 
Sbjct: 19  QYLALKNNTKHNPEHLITLEGLGPIQAALE-AGLELSCLFVCPERLRGGDGMALIELAIT 77

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNI 147
               +  V  + +  +V  E    GLA               R    L++LD +  P NI
Sbjct: 78  RKIHLYQVSEKVLGSMVDWEGPD-GLAAMVRLRRYDLSHLQPRQKGTLLILDGLQIPGNI 136

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++RSA      GII T+         L +++ G+L  +P +  S++  A   +  +G+
Sbjct: 137 GTVIRSADGAGAHGIIITQSRQRLTHPKLVRASMGSLFALPIVE-SDVETAYAWLKRYGY 195

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           Q +  S  ++    Q   + + A+++G E +G+             + M G   +LNV N
Sbjct: 196 QVVTTSPRARVSFRQARYSTRTAIVMGNEREGVSEDWFARHDLSVSIPMHGRADSLNVGN 255

Query: 268 AAAVALYITQNH 279
           AA + LY   + 
Sbjct: 256 AAVLMLYEVLHQ 267


>gi|291320023|ref|YP_003515281.1| rRNA methylase [Mycoplasma agalactiae]
 gi|290752352|emb|CBH40323.1| rRNA methylase [Mycoplasma agalactiae]
          Length = 243

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 39/272 (14%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           S++I S+++    +LR+   D                 E   + G H V  AL      +
Sbjct: 2   SQRITSVQNPKIKQLRKIFND--------------KNSEFFIVEGYHLVEEALK--ENLV 45

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            +L  +    A  D             V    ++ +  K    +G+         P  + 
Sbjct: 46  LELYESDYKTAIYDNSI---------LVSQNVLEALT-KTKNPEGIVALCR--KKPNFEQ 93

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + N   ++ LD+V DP N+G I+R A +F  D +++        +  + +S+ GAL  + 
Sbjct: 94  LGNK--VVFLDNVQDPGNVGTIIRIAKSFGFDTVVS---NVNFYNDKVIRSSQGALFTVN 148

Query: 189 YI--RISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
            +     NLT+ L K    GF+    S D S   +E+    +DK  ++ G EG G+    
Sbjct: 149 LVNYNYDNLTNILLKYKQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGISSAL 208

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + A  + ++ +    ++LNV+  A + LY  
Sbjct: 209 ADIADMLIYVPI--NFESLNVAVCAGIVLYEA 238


>gi|189911203|ref|YP_001962758.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775879|gb|ABZ94180.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 257

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 110/244 (45%), Gaps = 20/244 (8%)

Query: 49  LFLYGVHTVSAALNN--------PSRKIFQLLATKNA--LARLDWDANLPHPFPVKTVPP 98
             L+G       L +          + I +++         +    A LP+     TV  
Sbjct: 7   EILFGKRNFFEFLESLEQMAPERGIKTIREVIVKDGIGNEEKQRIKAYLPNSVKFTTVSA 66

Query: 99  QTIDKIVGKEAVHQG-LALETAPLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAI 150
           + +D+I  ++  HQG + + T      +L       +   N   +++LD + DP N+G +
Sbjct: 67  RELDRIA-QDKNHQGYVIIRTKQKSYLSLGFEQFKQNIKPNEGPVLILDRIQDPGNLGNL 125

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A       ++ + R +   + V+ K ++GA+ HI   R++NL   +  +    +  +
Sbjct: 126 LRTAECMGVKHVLMSDRDTSPITPVVEKVSAGAIHHIQIYRVANLKHGIDFLKKNEYWIL 185

Query: 211 GLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               + ++ + + + +  ++A+I+G EG+G++    E A  +A + + G + +LNV  A 
Sbjct: 186 ATDEEGEEGIWETLPDVSQMAVIMGNEGEGVKRILLEDADYVARIPLYGAVTSLNVVVAC 245

Query: 270 AVAL 273
            + L
Sbjct: 246 GITL 249


>gi|121634880|ref|YP_975125.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
 gi|120866586|emb|CAM10337.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
 gi|325142380|gb|EGC64789.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           961-5945]
 gi|325198323|gb|ADY93779.1| RNA methyltransferase, TrmH family [Neisseria meningitidis G2136]
          Length = 261

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 96/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +    +  +   +  +   +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGMPV-GVYIPEGKMPS-EEIR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   + +V    + KI         LAL   PL       + +    +VLD V 
Sbjct: 66  RLRAVVPEGRIFSVSDGILKKISSLSCADDILALIDIPLGG----TLPDKGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++L   L   
Sbjct: 122 DPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQADLEIWLASY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQVVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|328545333|ref|YP_004305442.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1]
 gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
          Length = 279

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 106/263 (40%), Gaps = 11/263 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLD 82
           ++   K+++      +H SQ       G+   + AL       +  L   A  N +A+  
Sbjct: 20  SNPIVKEIKGLVTLRKHRSQSGLFVAEGLKLATDALAAGWSVRYLALGPEARDNPVAQRA 79

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDH 140
             +       +  V    +  I  ++   Q + +         +DA+  ++  + + LD 
Sbjct: 80  AASAKARGALILEVNTGVLAAITRRD-NPQ-MVVGVYEQQLTPVDAIDPARATVWIALDR 137

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G++     +   +    ++  G+L H+P  R+S  TDA +
Sbjct: 138 VRDPGNLGTIIRTADAVGASGVMLVGDCTDPFAVEAVRATMGSLFHVPLARLS--TDAFK 195

Query: 201 KMH-SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +   W    +G   +          ++   L++G E +GL        + +  +   G 
Sbjct: 196 ALAAKWPGMVVGTHLEGSVDYRSLDYSEPALLLMGNEQQGLPADMAACCSHLVRIPQVGQ 255

Query: 260 IKALNVSNAAAVALYITQN-HFA 281
             +LN++ A  +ALY  +  H +
Sbjct: 256 ADSLNLAVATGIALYEIRRKHLS 278


>gi|300781739|ref|ZP_07091593.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
 gi|300533446|gb|EFK54507.1| SpoU rRNA methylase [Corynebacterium genitalium ATCC 33030]
          Length = 273

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 12/203 (5%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
            P   PV  V  + + ++ G + +H+GL          ++  + N++ L+VL+ V D  N
Sbjct: 69  APIDAPVYVVTRELLAEVAGYD-MHRGLIAVADRAEETSISEMLNARTLIVLEGVGDHEN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKM 202
           IGAI R+A     DG++     +        + + G +  +P+  +         +L ++
Sbjct: 128 IGAIFRNAAGMDVDGVLLGAGTADPLYRRSVRVSMGHVLRLPFAHLDGTSTTWQRSLDQL 187

Query: 203 HSWGFQTIGLSSDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQETATSMAHLH 255
              GF+ + L+ DS+     E           K+AL++G EG GL           A + 
Sbjct: 188 REQGFRLVSLTPDSRAVHLAEALVDDTGHPYKKVALLVGGEGPGLTEHAMRATDVRARIP 247

Query: 256 MPGIIKALNVSNAAAVALYITQN 278
           M     +LNV+ +AA+A Y  Q 
Sbjct: 248 MAAGTDSLNVATSAAIAFYERQR 270


>gi|297626644|ref|YP_003688407.1| RRNA methylase family protein (tRNA/rRNA methyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922409|emb|CBL56981.1| RRNA methylase family protein (TRNA/rRNA methyltransferase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 269

 Score =  178 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 13/259 (5%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           +  + D+H  +L     D+ +++  N +    ++       G   +  A     +    L
Sbjct: 4   LIQIDDAHDERLG----DFVRLRDVNLRKSLEAEHGLFIAEGDKIIHRAAQAGYQPRSFL 59

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           LA +        D       PV  V     ++I G   VH+G       +++ ++  +  
Sbjct: 60  LAPRWIDG--LRDVLDATDAPVYVVSEDLAEQITGFH-VHRGALASFKRIIAWSMHDLLA 116

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              L+V + + D  N+GAI+R A     DG++   R +        K++ G++  +P+ R
Sbjct: 117 MDRLVVCEDIVDHTNVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGSVFSMPWAR 176

Query: 192 ISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE-----IKNDKIALILGAEGKGLRPKTQ 245
           + +  D L  +   GF    L+  D    L++       +  K+A+++G EG GL     
Sbjct: 177 MDDWRDGLATLQRAGFTVAALALRDDAVGLDEFAARMRARPGKLAILMGTEGAGLSGHWI 236

Query: 246 ETATSMAHLHMPGIIKALN 264
             A +   + M   I +LN
Sbjct: 237 SQADAAVRIPMAHGIDSLN 255


>gi|296136564|ref|YP_003643806.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
 gi|294340692|emb|CAZ89084.1| putative tRNA/rRNA methyltransferase (SpoU) [Thiomonas sp. 3As]
 gi|295796686|gb|ADG31476.1| tRNA/rRNA methyltransferase (SpoU) [Thiomonas intermedia K12]
          Length = 262

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 102/268 (38%), Gaps = 27/268 (10%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K ++S + +     +   ++L G+H +  A          L+ T   L   +  A
Sbjct: 8   ENPLIKTLRSLSTEPGAVRKLGQVWLEGIHLI-EAALAAGHAAEPLITTDTGLLDPEIAA 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGL-----ALETAP----LLSPTLDAVRNSQLLM 136
            +      +TV             +HQ L     A+E  P    L++    +       +
Sbjct: 67  LVERVGTTQTV------------VLHQALFNWITAVENGPPVGMLIARPKSSKPRPGSAL 114

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD V D  N+G +LR+A A  C  +   +  +   S  + +SA GA   IP        
Sbjct: 115 ILDRVQDAGNVGTMLRTAAASGCGAVYLLRGCAGVWSPKVLRSAMGAHFVIPVFEDPPWE 174

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             L  +             +   L +    + +  I G EG+G+        +++  +  
Sbjct: 175 QVLNIVPR---PIYATHMQADTVLYELDLKEPVTWIFGNEGQGISDALVAKCSALVRIPQ 231

Query: 257 PGIIKALNVSNAAAVALYI--TQNHFAK 282
              +++LNV+ +AA+ LY    Q+ F+K
Sbjct: 232 ADGVESLNVAASAAICLYEGVRQSQFSK 259


>gi|291519714|emb|CBK74935.1| rRNA methylases [Butyrivibrio fibrisolvens 16/4]
          Length = 272

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 5/226 (2%)

Query: 56  TVSAALNNPSRKIFQLLATK--NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
            +  ALN  ++ +  L+  K  +     +   +L     V       I+ I G       
Sbjct: 43  VIKRALNRGAKALAFLVEAKAYDTDVVRELLVDLDDDTTVFVAALNVINNITGFNLTRGV 102

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           LA    P L    + + N++ + +L+ V +P N+GAI RSA A   + +  T   +    
Sbjct: 103 LAACRRPALPDPKELLANTKRIAILEDVMNPTNVGAIFRSAAALGVEAVFLTHPSADPFY 162

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIA 230
              A+ + G +  +P+      +D +  +H  GF+ + ++  ++  PL        DK+A
Sbjct: 163 RRAARVSMGTVFQVPWTYFYKDSDYIGALHQAGFKVVSMALKENAIPLSAPELKNQDKLA 222

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++ G E  G++  T   +  +  + M   + +LNV+ A+AV  +  
Sbjct: 223 IVFGTESTGIKDDTISKSDYVTIIPMYNEVDSLNVAAASAVTFWEL 268


>gi|240016589|ref|ZP_04723129.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA6140]
          Length = 261

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 97/263 (36%), Gaps = 18/263 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDW 83
           N+   + +     + +   Q     L GVH +   L +  + +   +      +   L  
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMPSEEVLKL 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVL 138
            A LP    + +V    + KI           L  A  +   +D      + +     VL
Sbjct: 68  TAVLPED-GIFSVSDGILKKISS---------LSCADDILTLIDIPLGGTLPDKGDCAVL 117

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L   
Sbjct: 118 DGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYLQADLEIW 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L       F T  L  + +  L  E   +  A + G EG G+     + A     + M  
Sbjct: 178 LAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHD 236

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             ++LNV+ AA + L+      A
Sbjct: 237 ATESLNVAMAATICLFEQMRQRA 259


>gi|255326342|ref|ZP_05367426.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296559|gb|EET75892.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 333

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 63/300 (21%), Positives = 113/300 (37%), Gaps = 51/300 (17%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDA 85
           RD  K+++   +++         + G   V  AL    +K  +  +  T+ A  R +  A
Sbjct: 40  RDIAKLRTRAARTKK----GQFLVEGPQAVREALKAHLKKPILDAVYVTEAAFDRHEDIA 95

Query: 86  NLPHPFP------------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----DA 128
            L                 ++ V  + ++ +       QG+    + ++  +      + 
Sbjct: 96  ELLEQVYGTPTPEEGRRVFMRVVTDEVLEAMADS-VSPQGIIA-VSFMVDASFSLLWGEG 153

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             N +L+ VL  V DP N G ILR A A   D +ITTK      +    +S +G+L H+P
Sbjct: 154 ALNPKLIAVLSRVQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHVP 213

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----------------------EIK 225
            I+   L D  + + S G   +         L++                          
Sbjct: 214 IIQGVQLEDFAEDVKSQGTAVLAADGYGAVNLQELSEYTAARRAGVEASAPSGVKGNFDL 273

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY---ITQNHFAK 282
           +     + G E +GL  + +  AT    + + G  ++LNV  AAAV LY   + Q   ++
Sbjct: 274 SKPTMWLFGNEAQGLNAEEKAAATMRVAVPVYGSAESLNVGTAAAVCLYASAMAQRGVSR 333


>gi|328881240|emb|CCA54479.1| putative rRNA methylase [Streptomyces venezuelae ATCC 10712]
          Length = 279

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 13/265 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRK----IFQLLATKNALAR 80
           + R  + + +     R+    + LF+  G   V  A+ +        + +L  T  A  R
Sbjct: 8   SPRSPRVVAARRLAKRNFRGKDRLFIAEGPQAVREAVEHRGSTGEPTLVELFTTVEAAER 67

Query: 81  --LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMV 137
                +A L     V       + + V +    QGL      L SP  + V    +L+ V
Sbjct: 68  YSAIIEAALASGARVHHASDAVLAE-VSQTVTPQGLVGVCRFLDSPFEEIVAARPKLVAV 126

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L HV DP N G +LR A A   D ++ T       +    +++ G+L H+P      +  
Sbjct: 127 LAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQ 186

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAH 253
           A+  + S G + +      +  L+ E+         A + G E  GL  +T+  A ++  
Sbjct: 187 AVAGLKSAGVRILAADGAGEDDLDAELDAGTMGGPTAWVFGNEAWGLPEETRALADAVVR 246

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + + G  ++LN++ AAAV LY +  
Sbjct: 247 VPIHGKAESLNLATAAAVCLYASAR 271


>gi|256832338|ref|YP_003161065.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685869|gb|ACV08762.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 275

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 115/292 (39%), Gaps = 34/292 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  ++  +S+++  +               +++   + +++H        + G  +V   
Sbjct: 1   MPDLTNPRSDRVKMV---------------RRLSGRSSRTKH----GQFLVEGPQSVREL 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALET 118
           +   +  +  L  + + + R     +  H   +   T  P+ +  +       QG+    
Sbjct: 42  VACRAELVRDLYVSSDRVDRYRDIYDEAHRQSLYLHTTTPEVLSAMSEDA---QGIVAVA 98

Query: 119 APL---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
             L   LS     +  + L+ VL  V DP N G ++R+A A   D +I         +  
Sbjct: 99  RTLDTRLSSLGPVLSKACLVAVLTDVRDPGNAGTVIRAADAAGADVVILAGDSVDLMNPK 158

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------K 228
           + +S++G+L H+P I  ++L D    +   G    G +  +   L+  ++          
Sbjct: 159 VVRSSAGSLFHMPVITNASLVDVHGALKMAGIPLFGTTPYADLTLDDLVEPQGPTSVGAP 218

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A + G E +GL  + Q    S+  + M G  ++LN++ AA + LY +    
Sbjct: 219 HAWVFGNEAQGLSVEDQSMCDSLVRIPMYGRAESLNLAMAATICLYTSARAL 270


>gi|297155951|gb|ADI05663.1| rRNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 277

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 111/275 (40%), Gaps = 23/275 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           ++ SL+       RR  +     +SF  K R         + G   V  A+ +    + +
Sbjct: 5   ELTSLRSPRVTAARRLAK-----RSFRGKERR------FLVEGPQAVREAMAH----LVE 49

Query: 71  LLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           +  T  A AR             PV T   + + ++       QG+      L +P  + 
Sbjct: 50  VYVTPEAAARHADIVAAARAAGAPVLTATDEVVAEMSDT-VTPQGIVGLCRFLDTPFEEI 108

Query: 129 VR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +R   +L+ VL HV DP N G +LR A A   D ++ T       +    +++ G+L H+
Sbjct: 109 LRARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKSVRASVGSLFHL 168

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPK 243
           P      +  A+  +   G + +      ++ L+ E+         A I G E  GL   
Sbjct: 169 PVAVGVPVERAVSGLREAGARVVAADGAGERDLDTELDEGVLGAPTAWIFGNEAWGLPEP 228

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+  A  +  + + G  ++LN++ AAAV LY +  
Sbjct: 229 TRALADEVVRVPIHGRAESLNLATAAAVCLYASAR 263


>gi|319779560|ref|YP_004130473.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
 gi|317109584|gb|ADU92330.1| RNA methyltransferase, TrmH family [Taylorella equigenitalis MCE9]
          Length = 259

 Score =  178 bits (453), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 112/271 (41%), Gaps = 18/271 (6%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I S ++ +Y  L++   + K  Q+               L G H V   L++   + F
Sbjct: 2   EIITSKENLYYKNLKKALSNNKCTQTV--------------LEGPHLVKQWLDSG--RAF 45

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                   L     +    +      V    + K + +   +QG+ L    + +  ++ +
Sbjct: 46  NKFVMSETLYNKGGNDFEGYTISNPIVLSDNLFKSLSEVVTNQGILLLI-DIPTYNINNL 104

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                +++LD + DP N+G +LR+ VA     +   K  S + S+ + +SA G+   +  
Sbjct: 105 SMQNTIVLLDSIQDPGNLGTLLRTCVAVGISDVALNKGCSSAWSSKVLRSAQGSHAFLKI 164

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +L   ++ + + G++ I  + D S K L +   N KIA I G EG G+  +     
Sbjct: 165 YHHVDLIGLIEILQAGGYEIIATALDLSSKNLFELNLNKKIAWIFGNEGNGVSSEILSLG 224

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + +   I++LNV  AA++ LY     
Sbjct: 225 LEKCIIPINQNIESLNVGVAASICLYEQYRQ 255


>gi|182413608|ref|YP_001818674.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177840822|gb|ACB75074.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 250

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 12/242 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +P+ L + G+  V A        I +L    AT   +  +            + V P  +
Sbjct: 2   KPKELTICGLAAVRAQFAADPGAIKRLYFDYATGRRIGVICRTLAQRKKI-YRCVEPAEL 60

Query: 102 DKIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +K VG    H G+           P  +     V+  + L+VLD + + HN+GAI R+A 
Sbjct: 61  EK-VGGTLHHGGIVAVVEAPEMREPAAADLTAWVKRCEPLLVLDRIGNAHNLGAIARTAA 119

Query: 156 AFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            F    +I  +   +   S    + A G + H+   R+ +L   L+ + + G+  IG ++
Sbjct: 120 FFGLPRLILPRDPAAAQPSEAAYRVAEGGMTHLELARVDDLPAFLRSLVAAGYDVIGAAT 179

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               P  Q      IAL+LG E  GL  +     T +  +   G +++LNVS A AV ++
Sbjct: 180 RGGLPQAQSHTGKPIALVLGNEEHGLSAEVAAACTRLVTIPGSGKVESLNVSVAGAVLIW 239

Query: 275 IT 276
             
Sbjct: 240 EL 241


>gi|317138163|ref|XP_001816718.2| hypothetical protein AOR_1_376184 [Aspergillus oryzae RIB40]
          Length = 351

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 114/315 (36%), Gaps = 79/315 (25%)

Query: 37  NQKSRHTSQPE-NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPH 89
           NQ++    Q E   F+YG   V AAL    R +++L   + +   L           L  
Sbjct: 19  NQRNTTVPQREYQKFIYGTSAVEAALRCSRRHMYKLYVYQASGEELSSAKVALRKLALSK 78

Query: 90  PFPVKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPTL-------------------- 126
              VK       + +DK+      H G  LE +PL    +                    
Sbjct: 79  NVKVKMAFGGWDRLLDKMSA-GRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDFGVELGA 137

Query: 127 --------------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                               D      ++++LD + DP N+GAI+RSA     D II   
Sbjct: 138 QSREEALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAIIFAG 197

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           R S   S V  K+++GA E++  + +SN  D +Q+  + G++     +        +  +
Sbjct: 198 RNSAPLSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKFYAADAPGPASKYVDTAS 257

Query: 227 ----------------DKIALILGAEGKGLRPKTQETATSMAHLHM------------PG 258
                               +++G+EG GL    +  A S+  +              P 
Sbjct: 258 IVEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLATPLGVESDPS 317

Query: 259 IIKALNVSNAAAVAL 273
            + +LNVS AAA+ +
Sbjct: 318 RVDSLNVSVAAALLM 332


>gi|322391338|ref|ZP_08064808.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
 gi|321145764|gb|EFX41155.1| SpoU rRNA methylase [Streptococcus peroris ATCC 700780]
          Length = 179

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 5/182 (2%)

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           +  + +  +   +   QG+            D      L   L+ V DP N+G ++R+A 
Sbjct: 1   MTEEILLDLADSQ-TPQGIVAIVQKEEEQMPDLTSGKYLF--LEDVQDPGNVGTMIRTAD 57

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-S 214
           A    G+I + + +   S    +S  G+  H+P  R+  +   +++        +  + S
Sbjct: 58  AADFTGVIVSSKSADIYSLKTLRSMQGSHFHVPIYRMP-VETFVEEAKKGNLPILATTLS 116

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              K   +  + +  AL++G EG+G+ P   E A  + H+ M G  ++LNV+ AA + ++
Sbjct: 117 QESKDYRELARLENFALVMGNEGQGISPFMVEQADQLVHISMKGQAESLNVAVAAGILMF 176

Query: 275 IT 276
             
Sbjct: 177 YL 178


>gi|15840295|ref|NP_335332.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|13880456|gb|AAK45146.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
          Length = 242

 Score =  178 bits (452), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 6/234 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +   GV  V   L +    +  L  T   LA L  D       P        + +++G  
Sbjct: 2   VIAEGVLVVQRMLASRFTPL-ALFGTDRRLAELKDDLA-GVGAPYYRASADVMARVIGFH 59

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                LA             V  ++ + VL+ VND  N+G+I R+A   S D ++     
Sbjct: 60  LNRGVLAAARRVPEPSVAQVVAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGC 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIK-- 225
           +        + + G    +PY R ++    L  +   GF+ + ++       L + I   
Sbjct: 120 ADPLYRRAVRVSMGHALLVPYARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAV 179

Query: 226 -NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +++IAL++GAEG GL       +     + M     +LNV+ AAA+A Y    
Sbjct: 180 SHERIALLVGAEGPGLTAAALRISDVRVRIPMSRGTDSLNVATAAALAFYERTR 233


>gi|299067474|emb|CBJ38673.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
           solanacearum CMR15]
          Length = 259

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 102/259 (39%), Gaps = 10/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++ +  ++   +     L G+H V+A L+       Q L ++  LA  + 
Sbjct: 6   SRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGHVP-AQCLVSERHLAHPEV 64

Query: 84  DANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
              L    P   V        ++     V  G+ L             R     ++LD +
Sbjct: 65  APLLARIDPQSVVLLADSLFAQLT---TVVNGIDLMALIETPEGHLPHRIEHDCVILDGI 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G+ILR A A     +  T   + + SA   ++A GA  H+  +          +
Sbjct: 122 QDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRAAMGAHFHLNVVEHCTFESVHAR 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +H      +  SS ++  +     N  +  + G EG G+  +     T+   +  PG ++
Sbjct: 182 LH---VPLLATSSHARHAVFDMPLNKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGME 237

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV  AAA+ L+      
Sbjct: 238 SLNVGAAAAICLFEAVRQR 256


>gi|58583011|ref|YP_202027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427605|gb|AAW76642.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 353

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 8/232 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIV 105
            + LYG++ V A      + + +L  ++  + +        +      + V    + K+ 
Sbjct: 113 EMRLYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLA 172

Query: 106 GKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              A H+G+  E       PL        +   L + LD V +PHN GA+LRS+  F   
Sbjct: 173 AS-AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVA 231

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++     +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +
Sbjct: 232 GLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDV 291

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                  ++  ++GAE +G+             +   G +++LNV++A AV 
Sbjct: 292 FAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 343


>gi|322710050|gb|EFZ01625.1| RNA methyltransferase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 548

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 125/344 (36%), Gaps = 77/344 (22%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHT---------SQPENLFLYGVHTV 57
           +   +  S ++    + R  +R+   ++    + R           +   + FLYG   V
Sbjct: 171 QSYSRPQSPQNPQKRRPRIENREDGTIEDAIARPRRRGMLPMTITYTTAASQFLYGRSVV 230

Query: 58  SAALNNPSRKIFQLLATKNALAR------LDWDANLPHPFPVKTVPPQT---IDKIVGKE 108
            AAL    R++++L        R      +  +       PV  VP +    +DK+    
Sbjct: 231 KAALQQGRRQLYKLYVYGGENRRGVDDNDVIINLAKARGVPVTIVPNEDQRLMDKM-SMG 289

Query: 109 AVHQGLALETAPLLSPTLDAVRN------------------------------------- 131
             H G  LET+PL    + A+ +                                     
Sbjct: 290 RPHNGFVLETSPLPQLPVKALGSLEESPSKLGFHIELVHQTMEQKAINGENTFVPKANNS 349

Query: 132 --SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+++L  + DP N+GA+LR+A     D +  T R S + + V+ KSA+GA E +  
Sbjct: 350 AMKPLVLLLHEILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKSAAGAAEEVTI 409

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS---------DSKKPLEQE-------IKNDKIALIL 233
             + +  + L+   + G++T    +            K +  +       +      L+L
Sbjct: 410 FTVDSPIEFLEGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDCVEQTSPLDQHPCVLVL 469

Query: 234 GAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALY 274
           G EG GL  + +  A     +        + +LNVS AA +  +
Sbjct: 470 GNEGHGLPRQIKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCH 513


>gi|321472146|gb|EFX83117.1| hypothetical protein DAPPUDRAFT_302082 [Daphnia pulex]
          Length = 308

 Score =  178 bits (452), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/272 (25%), Positives = 115/272 (42%), Gaps = 32/272 (11%)

Query: 40  SRHTSQPENLF---LYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPF 91
            + +   E  +   LYG+H +S AL    R I  +   ++ L      +   +       
Sbjct: 32  KKQSPGREEFYFDILYGIHPISCALEAKRRTIETVYYRRDLLNHSGRVKEILERCWEENI 91

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-----------DAVRNSQLLMVLDH 140
               +P   ID IV K   HQGL  +T  L                +   +  + ++L+ 
Sbjct: 92  KTLPIPSSKIDTIVPKGKPHQGLLAKTTRLYYIPTPCTQSIAQLSSEKEASKPVWLLLNE 151

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N G+ILRSA    CD I  T   S S + V++K++SG +E +P   I N T+  Q
Sbjct: 152 IQDPMNFGSILRSAYFMGCDKIFVTSHKSCSLTPVVSKASSGVMELMPIHSIMNTTEFCQ 211

Query: 201 KMHSWGFQTIGLSSDSK---------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +    +  +G  S +           P+     ++   +ILG EG+GL  +  +  T  
Sbjct: 212 LLKESKWDVVGTGSKTDESNGTACKPTPVGSFQLSNPTLIILGNEGRGLPDELVDLCTHQ 271

Query: 252 AHLHMPG----IIKALNVSNAAAVALYITQNH 279
            ++         + ++NVS AAAV L+   N+
Sbjct: 272 IYVESRSNLNKNVDSMNVSAAAAVILHSVLNN 303


>gi|291443483|ref|ZP_06582873.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346430|gb|EFE73334.1| LOW QUALITY PROTEIN: rRNA methyltransferase [Streptomyces
           roseosporus NRRL 15998]
          Length = 296

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 94/245 (38%), Gaps = 12/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R        H     V     
Sbjct: 43  KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 102

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAF 157
             +   V +    QGL      L SP  + +     L+ VL +V DP N G +LR A A 
Sbjct: 103 DVLAD-VSQTVTPQGLIGVCRFLDSPFQEILDARPTLVAVLANVRDPGNAGTVLRCADAA 161

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I T       +    +++ G+L H+P      +  A+Q +   G + +       
Sbjct: 162 GADAVILTDASVDLYNPKSVRASVGSLFHLPVAVGVPVDQAVQGLRDAGVRILAADGAGA 221

Query: 218 KPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+ E+         A I G E  GL  +T+  A ++  + + G  ++LN++ AAAV L
Sbjct: 222 DDLDDELDAGTMGTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCL 281

Query: 274 YITQN 278
           Y +  
Sbjct: 282 YASAR 286


>gi|262202744|ref|YP_003273952.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262086091|gb|ACY22059.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 269

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 14/254 (5%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP- 97
           ++    +     + GV+ V AAL +   +I  +L   +   R            V  V  
Sbjct: 19  RAAARREQGRFLVEGVNAVQAALRSGHAQI--MLVPDDDQDRHASLIAEARDAGVDVVAI 76

Query: 98  -PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSA 154
            PQ   K+  + +   G+      LL  +LD V     +LL V     +P N G ++R A
Sbjct: 77  RPQAAVKLA-ETSTPTGIFA-VCGLLDDSLDRVLAAAPRLLAVGVEPREPGNAGTLIRCA 134

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A   D ++         +    +S++G++ H+P +R  +++DAL  + + G   +  ++
Sbjct: 135 DAMGADAVVLLGDAVDPHNGKCVRSSAGSIFHLPIVRERSVSDALSAIAAAGVCVLATAA 194

Query: 215 DSKKPLEQE------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           D +  L+        +     A + G E  GL    Q  A     + + G  ++LNV+  
Sbjct: 195 DGELILDDISDDADGLLTRPTAWLFGNEAHGLPVDVQAMADHRVAVPIRGRAESLNVAAT 254

Query: 269 AAVALYITQNHFAK 282
           AA+ LY +     +
Sbjct: 255 AAICLYASARRQTR 268


>gi|188527602|ref|YP_001910289.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
 gi|188143842|gb|ACD48259.1| hypothetical protein HPSH_04120 [Helicobacter pylori Shi470]
          Length = 227

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +L +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVIMHILNSHQEKLQEIYLSKEIDKKLFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG+I      
Sbjct: 62  NHQGVLAKVELPLAVSLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            L LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 TLFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|325000927|ref|ZP_08122039.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
          Length = 269

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 5/238 (2%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y+ + + +++         +   GV  V   L++P   +  LL     LA L  D +   
Sbjct: 18  YRDLTTADRRPDRPGGRGLVIAEGVVVVRRLLDSPY-PVRSLLGVPRRLAELADDLH-GT 75

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             P  +    T+ + VG       LA+          + +  ++ + V + V D  N+G+
Sbjct: 76  DVPAFSTDADTMAQAVGFHLNRGVLAVADRAPAPDPAELLAGARTVAVCEGVGDHENLGS 135

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKMHSWGFQ 208
           + R+A A   DGI+     S        + + G +  +P+ R+      +L  +   GF 
Sbjct: 136 LFRNAAALGVDGILLGPGCSDPLYRRSVRVSMGHVLRVPFTRLDGEWPASLDVLREAGFT 195

Query: 209 TIGLSSD-SKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              L+ D   +PL    +   ++A +LGAEG GL  +    A     + M   + +LN
Sbjct: 196 VAALTPDAGAEPLATAGLAGGRVAWLLGAEGPGLTDEALTAADRRVRIPMATGVDSLN 253


>gi|321309539|ref|YP_004191868.1| RNA methyltransferase TrmH [Mycoplasma haemofelis str. Langford 1]
 gi|319801383|emb|CBY92029.1| RNA methyltransferase TrmH group 3 [Mycoplasma haemofelis str.
           Langford 1]
          Length = 244

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 8/173 (4%)

Query: 115 ALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                      LD++      R   L+++LDH+ DP N+GAILR+  AF  DG+I  K  
Sbjct: 70  VAFIRKKKDLDLDSLIRICSSRERSLILILDHLQDPFNVGAILRTCCAFEVDGVILPKDK 129

Query: 169 SPSESAVLA-KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226
           S   +  +  KS+ G   +I  + +SNL +A+ K+ + G+         + K  ++    
Sbjct: 130 SAPLNHEVTLKSSQGYSLNINTVEVSNLNNAITKLKNRGYWVYSTEIGPNTKSFKEVEYA 189

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           DK ALI+G+EGKG+    ++ +    H+ M   + +LNVS AA + +    + 
Sbjct: 190 DKCALIMGSEGKGVSKILRDNSDVKVHIPMKNNVNSLNVSVAAGIIISEISDQ 242


>gi|328907932|gb|EGG27692.1| putative rRNA methylase [Propionibacterium sp. P08]
          Length = 271

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 8/238 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +     + G   V  AL  P  K+  L  +  +      +A       +  +  + ++ +
Sbjct: 34  ESGLFLVEGSQAVREALAWPG-KVNLLATSDPSRDAEHIEAAEHRGVRIAVLTDEDVNTL 92

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+      +    L    + +L ++   V DP N G ++R A AF  D +I 
Sbjct: 93  SDT-VTSQGVFAVCRQVTRHKLPD-EDVRLAVICAQVRDPGNAGTVIRCADAFGADCVIL 150

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T+      +    +S+ G++ H+P I    L DA++  H      +         L+   
Sbjct: 151 TRGSVDPHNPKTVRSSVGSIFHLPVIVGVELADAVEWAHQREMSVLAADG-GGHSLDAVA 209

Query: 225 KND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++      IA ++G E  GL    +  A  +  + M G +++LN+S AAAV LY T +
Sbjct: 210 RSGRLKRPIAWLMGNEAWGLPEADRALADEVVGVPMWGAVESLNLSTAAAVVLYATAS 267


>gi|320581168|gb|EFW95389.1| Ribose methyltransferase [Pichia angusta DL-1]
          Length = 378

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 133/326 (40%), Gaps = 59/326 (18%)

Query: 5   SKKKSEKIFSLKDSHY---AKLRRNHRDYKKMQSFNQKSRHTSQ-----PENLFLYGVHT 56
            ++  E  F  K +H+    K R   RD K   + +Q  R T       P   +LYG + 
Sbjct: 52  DREDKESWFKRKHAHHHAKQKKREPQRDEKPEFTRSQALRKTISQLKLNPLVEYLYGTNP 111

Query: 57  VSAALNNPSRKIFQLLATKN--ALARLDWDANLPH--PFPVK-TVPPQTIDKIVGKEAVH 111
           V AAL    R+ F  L   N  +  +L     L      PVK       ++ +     VH
Sbjct: 112 VLAALKAQQRESFGTLYLHNPKSTPKLAEILALARELELPVKSEYGKHDLNLMT-NNGVH 170

Query: 112 QGLALETAPLLSPTLD---------------------------AVRNSQLLMVLDHVNDP 144
            G+ +ET P+    L                            A     L + +D ++DP
Sbjct: 171 NGIVVETKPIEVEQLRCLAASEIGKFTVTKEHVGATESSVSSTAAERYPLALYIDEISDP 230

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+GAILRSA     D I+ ++R     S V++K++SGALE +P           ++  S
Sbjct: 231 HNMGAILRSAYFLGVDCIVVSERNCAPLSPVVSKTSSGALEFLPIYSSQKPLRFFEESRS 290

Query: 205 WGFQTIGLSSDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            G+  I   + S+             L+ +++N    L++G+EG+G+R    + +  +  
Sbjct: 291 NGWTIISSVAPSESGRMGSKQIDADTLKGQLQNGPCMLVVGSEGQGIRTSLLQRSDFLVS 350

Query: 254 LHMPGI------IKALNVSNAAAVAL 273
           ++  G       + +LN S A A+ L
Sbjct: 351 VN-SGRADLDESVDSLNASVATALLL 375


>gi|227545546|ref|ZP_03975595.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
 gi|300908384|ref|ZP_07125847.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227184483|gb|EEI64554.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri CF48-3A]
 gi|300893791|gb|EFK87149.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 290

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 22/258 (8%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTV 96
           P          +  AL    R    LL  +  L R   D +              P+  V
Sbjct: 34  PGLFIAESPKVIERALRAGYRP-ASLLIEEKELERDLADLDHEMAINQTRGLEQTPIYVV 92

Query: 97  PPQTIDKIVGKE-AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAI 150
             + + ++ G    + +G       +  P+L+        +   + +L+ V +P NIGAI
Sbjct: 93  NSKLLRQLAGGGYNLLRGALAAMHRVERPSLNNFLATMPSDHPRIAILESVVNPTNIGAI 152

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHSWGF 207
            RSA A   DG+I T   +       ++ A G +  +P+  +      ++ +  +H  G+
Sbjct: 153 FRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQSEGVDLLHRAGY 212

Query: 208 QTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +T  ++   +   ++       D++A+ILG+EG GLR  T   +     + M   + +LN
Sbjct: 213 KTAAMALRHNTVDIDDPQLAKVDRLAIILGSEGPGLRENTITQSDFTIKIPMATGVDSLN 272

Query: 265 VSNAAAVALYITQNHFAK 282
           V+ A+A+A +   N   K
Sbjct: 273 VAAASALAFWELGNRKVK 290


>gi|155371979|ref|NP_001094596.1| rRNA methyltransferase 1, mitochondrial [Bos taurus]
 gi|154425820|gb|AAI51495.1| MRM1 protein [Bos taurus]
 gi|296477019|gb|DAA19134.1| mitochondrial rRNA methyltransferase 1 homolog [Bos taurus]
          Length = 360

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 23/212 (10%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVRNSQ----LLMV 137
           A      PV     + +D +  +  VHQG+ +E +PL        +  R       L +V
Sbjct: 98  AAEERAIPVLRPRRRELDVLC-RHQVHQGVCMEVSPLRPRPWAEAEVARPGDDPQQLWLV 156

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + DP N+GA+LRSA     D +IT++R S   + V++K+++GA+E +      +L  
Sbjct: 157 LEGLQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGAMEVMDVFSTDDLAG 216

Query: 198 ALQKMHSWGFQTIGL--------SSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQE 246
            LQ     G+   G         +  SK P+      + +    L+LG EG GL    Q 
Sbjct: 217 FLQARARQGWLVAGTVGCPGPEIALSSKIPVTRCLDFLWDRPTLLVLGNEGSGLSRAVQA 276

Query: 247 TATSMAHL-H---MPGIIKALNVSNAAAVALY 274
           +   +  +     +P  +++LNVS AA + L+
Sbjct: 277 SCQLLLTILPGRQLPPGLESLNVSVAAGILLH 308


>gi|313906489|ref|ZP_07839823.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
 gi|313468679|gb|EFR64047.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
          Length = 263

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 11/243 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA---ALNNPSRKIFQLLATKNALARLD 82
           +++  K++   N K++   +       G+        AL +  R   +    ++   R  
Sbjct: 6   SNQQIKRVIQLNAKAKSRREEGCFVAEGIKLFRETPAALRD--RVFVEASFAEDDQHREI 63

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNS-QLLMVLD 139
            +      F V  V  +  +K+       QG+          +  L        L++VL+
Sbjct: 64  MEEVRKGSFEV--VEDRVFEKMCDTR-TPQGILTIARMPEYRAEELLGSEGHVPLILVLE 120

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G I+R+A      GI  + + +      + +S  G++  +P+IR  +L   L
Sbjct: 121 DLQDPGNLGTIIRTAEGAGVTGIFMSNKTADPFQPKVIRSTMGSIYRVPFIREEDLCARL 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +              +    QE      A ++G EG GL  +    A  +  + M G 
Sbjct: 181 DWLREREVYAYAAHLKGENSYNQEDYRKGTAFLIGNEGNGLSDQLAGKAAHLIRIPMEGQ 240

Query: 260 IKA 262
           +++
Sbjct: 241 VES 243


>gi|118468977|ref|YP_888083.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
           str. MC2 155]
 gi|118170264|gb|ABK71160.1| RNA methyltransferase, TrmH family protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 252

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 13/242 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AAL      + ++ AT+ AL R           PV     +   
Sbjct: 13  RRRAARFLAEGPNLVEAALRRG--LVSEVFATEAALDRFGALLADAPVTPVT----ERAA 66

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCD 160
           K +       GL      L   +LD V      L+ V   +++P N G ++R A A    
Sbjct: 67  KALSDTVTPVGLVA-VCRLPEVSLDDVLAGPAGLIAVPVQLSEPGNAGTLIRVADAMGAA 125

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++         ++   ++++G++  IP I   +    +Q++   G + +  + D +  L
Sbjct: 126 AVVLAGNSVDPYNSKCLRASAGSIFSIPVISDPDEARVVQRLRDAGLRVLATTVDGEADL 185

Query: 221 EQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +         +  A + G E  GL       A     + MPG  ++LN+++AA++ LY +
Sbjct: 186 DDPDLEAELTEPTAWLFGPEAHGLSTDLAAMAHRRVQIPMPGHAESLNIASAASICLYQS 245

Query: 277 QN 278
             
Sbjct: 246 AR 247


>gi|118464222|ref|YP_882308.1| TsnR protein [Mycobacterium avium 104]
 gi|254775574|ref|ZP_05217090.1| TsnR protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|118165509|gb|ABK66406.1| TsnR protein [Mycobacterium avium 104]
          Length = 263

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 7/241 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AA       +  +  T+ A  R           PV  +  +   
Sbjct: 21  RRRAARFLAEGPNLVEAA--AGRGLVRDVFVTEAAQQRYAPLLA-ALDCPVHLIT-ERAA 76

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K +       GL        +   D +  S  L+ V   +++P N G ++R + A    G
Sbjct: 77  KALSDTVTPAGLVAVCDLPATGLRDVLAGSPRLIAVAVQISEPGNAGTLIRLSDAMGAAG 136

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++         +    ++++G++  +P +   +L +A+  +   G Q +  + D +  L+
Sbjct: 137 VLLAGHSVDPYNGKCLRASAGSIFSVPVVAAPDLREAVAAVREAGLQLLATTVDGEVRLD 196

Query: 222 Q--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  E+     A + G E  GL  +    A     + M G  ++LNV++AAA+ LY +   
Sbjct: 197 RAGELLAKPTAWLFGPESHGLPSEVAAAADHRVRIPMAGGAESLNVASAAAICLYQSARA 256

Query: 280 F 280
            
Sbjct: 257 L 257


>gi|238912713|ref|ZP_04656550.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 345

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E +     ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPSDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|259502996|ref|ZP_05745898.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169034|gb|EEW53529.1| TrmH family RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 288

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 110/269 (40%), Gaps = 20/269 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP- 88
           Y ++           QP          +  AL    R    LL  +  LAR   D +   
Sbjct: 18  YVRLNEAQLFHARGPQPGLFIAESPKVIERALRAGYRP-ASLLMEEKVLARDLADLDHEM 76

Query: 89  --------HPFPVKTVPPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNS-QLLM 136
                      P+  V  Q I ++ G   +   LA       P L+  L  +  +   + 
Sbjct: 77  AANQTAGLGQTPIYVVNNQLISQLAGYNLLRGALAAMYRVPRPDLNHFLATLPAAHPRIA 136

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR---IS 193
           VL+ + +P N+GAI RSA A   DGII T   +       ++ A G +  +P+      +
Sbjct: 137 VLERIVNPANVGAIFRSAAALGIDGIIVTSDSADPLYRRSSRVAMGTVFQVPWTYIDAHT 196

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATS 250
             T  ++ +H  G+QT  ++   +   ++       DK+A+ILG+EG GL  +T   +  
Sbjct: 197 WQTAGVRLLHRLGYQTAAMALRHNTVRIDDPQLAQVDKLAIILGSEGPGLAEQTIAQSDF 256

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   + +LNV+ A+A+A +   N 
Sbjct: 257 TIKIPMAAGVDSLNVAAASALAFWELGNR 285


>gi|254786479|ref|YP_003073908.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
 gi|237686026|gb|ACR13290.1| RNA methyltransferase, TrmH family [Teredinibacter turnerae T7901]
          Length = 258

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 9/233 (3%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVG 106
           +YG      AL +   ++++L  +++       D  +         V     + +  I  
Sbjct: 20  IYGRKPCLEALQDKHVQVYRLHLSESNKPAPILDEIIALAKARGAEVLYHDKRQLSHISK 79

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                QG+A++              D        + LD V +P N+G I+RS  A     
Sbjct: 80  NSKQDQGIAMDLVLAGFTEHEDYLADFTPGEHTFIALDSVTNPQNLGMIIRSVCASPATA 139

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  ++      A++ K+++G L   P IR   L   LQ   + G   +GL+ D+K  LE
Sbjct: 140 LILPRKGCAKLDALVIKASAGTLFKAPVIRCDTLMSCLQAFKTKGACVVGLALDAKTSLE 199

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E        +LG E  G+ P           + M   +++LNV+  A++  +
Sbjct: 200 NESSAGTRIYVLGNETDGISPDVSRLCDEQLKIPMRNGVESLNVAVTASLIAF 252


>gi|171059516|ref|YP_001791865.1| tRNA/rRNA methyltransferase SpoU [Leptothrix cholodnii SP-6]
 gi|170776961|gb|ACB35100.1| tRNA/rRNA methyltransferase (SpoU) [Leptothrix cholodnii SP-6]
          Length = 277

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 10/255 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +H   K ++    ++    +   ++L G H   A L    R    ++     L     + 
Sbjct: 28  SHALVKDLRRLAHEAGAYRKLGRIWLEGDHLARALLARGGRPQICVVGASAWLQPNWREL 87

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            L  P  V  +    + +I   E+    G  +       PT   V      +VLD + DP
Sbjct: 88  ALAAP-EVVVIADNLLPEISSLESPAPLGFLIAAPAARVPTQSGVN----TLVLDRLQDP 142

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G +LRSA A     ++  K  +   S  + ++  GA   +  +        + ++ +
Sbjct: 143 GNVGTLLRSAAALGVKQVLAMKGTAALWSPKVLRAGMGAHFALHLVEGVE----VNELDT 198

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +  SS +++ L +       A +LG EG+G+             +  PG  ++LN
Sbjct: 199 LDLPLLATSSHAEQSLHEVRLPQPCAWVLGHEGQGVAEAVMRRCALTVRIPQPGGEESLN 258

Query: 265 VSNAAAVALYITQNH 279
           V+ AAA+ LY +   
Sbjct: 259 VAAAAAICLYESARQ 273


>gi|88705071|ref|ZP_01102783.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71]
 gi|88700766|gb|EAQ97873.1| SpoU rRNA methylase family protein [Congregibacter litoralis KT71]
          Length = 257

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 10/253 (3%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNA---LARLDWDANLPHP 90
           S   K     +   L +YG   V  AL +       L +A  N    + R    A     
Sbjct: 2   SQQGKPDRQERRRFLTIYGRKAVLEALQDEDMDCRILHMANSNRGGGIIRDIQRAAQERG 61

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPH 145
              +    + + +I       QG+AL+        LDA         Q ++ LD V +P 
Sbjct: 62  LDCREHSREELARISRNGRQDQGVALDVYCAAMGELDAYLRDMSDAPQRILALDGVTNPQ 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++RSA A    G+I   R +P+   ++ K+++G +   P +R   + D  +++   
Sbjct: 122 NMGMVIRSAAAAGIQGLIYADRGNPALGPLVIKASAGTVFRAPLLRCQTVMDGARQLSDA 181

Query: 206 GFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           GF    L +D ++ L   +    +   +LG E  G+    +        + M   +++LN
Sbjct: 182 GFTLYRLQADGRRSLFDGQDFAQRALFVLGGESDGISEALRGLPGENLSIPMRNGVESLN 241

Query: 265 VSNAAAVALYITQ 277
           V+ + A+  YI  
Sbjct: 242 VAVSGALVAYIAA 254


>gi|46200014|ref|YP_005681.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
 gi|46197641|gb|AAS82054.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
          Length = 260

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 103/256 (40%), Gaps = 7/256 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K + +  ++ +   +     + G   V  AL      +  LL    A      D 
Sbjct: 7   QNPRVKALAALKER-KERERTGRFLVEGRREVERALE-AGLSLETLLLGPKARP---EDR 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     V  +  + + ++  +E   Q L +   P  S     +  + L++VL  +  P 
Sbjct: 62  ALAGGAEVLELSERALARVSARENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILR+A     D ++  +      S  + ++++GA+  +P   ++   +A + +   
Sbjct: 122 NLGAILRAADGAGADLVLVAEG-VDLFSPQVIRNSTGAVFALPVYPVAE-EEAARFLEEQ 179

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +  + + ++   +      +A +LGAE KGL    +  A     + M G   +LNV
Sbjct: 180 NLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNV 239

Query: 266 SNAAAVALYITQNHFA 281
           +  AA+ LY      +
Sbjct: 240 AVTAALLLYEALRQRS 255


>gi|254385009|ref|ZP_05000343.1| rRNA methyltransferase [Streptomyces sp. Mg1]
 gi|194343888|gb|EDX24854.1| rRNA methyltransferase [Streptomyces sp. Mg1]
          Length = 288

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/246 (23%), Positives = 104/246 (42%), Gaps = 12/246 (4%)

Query: 44  SQPENLFLYGVHTVSAALNN----PSRKIFQLLATKNALARL--DWDANLPHPFPVKTVP 97
           ++       G   V  A+ +     +  + +L AT  A  R     +A L     V    
Sbjct: 30  TKERRFIAEGPQAVREAVEHRGAGGASTLIELFATAEAAERYHDIVEAALAAGARVHYAC 89

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156
            + + + V +    QGL      L SP  D +    +L+ VL HV DP N G +LR A A
Sbjct: 90  DEVLAE-VSQTVTPQGLVGVCHFLDSPFEDILAARPKLVAVLAHVRDPGNAGTVLRCADA 148

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D ++ T       +    +++ G+L H+P      +  A++ + + G + +      
Sbjct: 149 AGADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQAVEGLRAAGVRILAADGAG 208

Query: 217 KKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +  L+ E+         A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV 
Sbjct: 209 EDDLDAELDAGTMGTPSAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVC 268

Query: 273 LYITQN 278
           LY +  
Sbjct: 269 LYASAR 274


>gi|148544812|ref|YP_001272182.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|184154155|ref|YP_001842496.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227363952|ref|ZP_03848053.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
 gi|325683156|ref|ZP_08162672.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148531846|gb|ABQ83845.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri DSM
           20016]
 gi|183225499|dbj|BAG26016.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227071007|gb|EEI09329.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus reuteri MM2-3]
 gi|324977506|gb|EGC14457.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 290

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 106/258 (41%), Gaps = 22/258 (8%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---------PVKTV 96
           P          +  AL    R    LL  +  L R   D +              P+  V
Sbjct: 34  PGLFIAESPKVIERALRAGYRP-ASLLIEEKELERDLADLDHEMAINQTRGLEQTPIYVV 92

Query: 97  PPQTIDKIVGKE-AVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAI 150
             + + ++ G    + +G       +  P+L+        +   + +L+ V +P NIGAI
Sbjct: 93  NSKLLRQLAGGGYNLLRGALAAMHRVKRPSLNNFLATMPSDHPRIAILESVVNPTNIGAI 152

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHSWGF 207
            RSA A   DG+I T   +       ++ A G +  +P+  +      ++ +  +H  G+
Sbjct: 153 FRSAAALGIDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQSEGVDLLHRAGY 212

Query: 208 QTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +T  ++   +   ++       D++A+ILG+EG GLR  T   +     + M   + +LN
Sbjct: 213 KTAAMALRHNTVDIDDPQLAEVDRLAIILGSEGPGLRENTITQSDFTIKIPMATGVDSLN 272

Query: 265 VSNAAAVALYITQNHFAK 282
           V+ A+A+A +   N   K
Sbjct: 273 VAAASALAFWELGNRKVK 290


>gi|313683406|ref|YP_004061144.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM
           16994]
 gi|313156266|gb|ADR34944.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM
           16994]
          Length = 250

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 17/233 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVG 106
           LYG +     L + + +I +L  +K+       +  L         +K    +++ +I  
Sbjct: 20  LYGRNVAVEVLRDDAVQIHKLHLSKSNRIDETIEEILALAEMRGIEIKYHTKESLSRISK 79

Query: 107 KEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             A  QG+A++       +       + +S  L+ LD +N+P N+G I+RSA A   DGI
Sbjct: 80  NSAQDQGVAIDVVSQNYRSASNIATDLPSSFRLLALDGINNPQNLGMIVRSAAASKIDGI 139

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDSKKP 219
           +  +R S   S ++ K+++G L  IP     +L++ L      G +    I LSS +K  
Sbjct: 140 VLPRRNSTKLSPLVMKASAGTLFKIPIYYCEDLSEIL------GIKDTAIITLSSHAKDD 193

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +       +   +LG E +G+       +T    + M   +++LNV+  A + 
Sbjct: 194 IHTLKIPSRAIFVLGNETEGVSDAVMRASTHSVSIPMYRGVESLNVAVTAGIV 246


>gi|296129890|ref|YP_003637140.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296021705|gb|ADG74941.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 279

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 105/249 (42%), Gaps = 15/249 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQLLATKNALARLDWDANL 87
           DY  +     + R     E L++    TV   AL    +    LLA +   A  D  A  
Sbjct: 19  DYVGLTDVALRMR-VEAAEGLYMAESSTVLERALRAGHQPRSVLLAPRWVPAVEDMLAAS 77

Query: 88  PHP--FPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMV------L 138
           P     PV       ++ I G   VH+G LA    P L    D +  ++          L
Sbjct: 78  PVDGVVPVHVAEDPVLEAITGFH-VHRGALAAMHRPALPAVADVLAAARGGAGARRVAVL 136

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI    D 
Sbjct: 137 EDLVDHTNVGAAFRSAAALGVDAVLVTPRCADPLYRRAVRVSMGTVFQVPWTRIDPWPDG 196

Query: 199 LQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +  +   GF T  L+ S+   PL++      +++AL+LGAEG GL+P+T         + 
Sbjct: 197 IATLRQAGFVTASLALSEDSVPLDELVADPPERLALVLGAEGDGLKPETVAAGDLTVRIP 256

Query: 256 MPGIIKALN 264
           M G + +LN
Sbjct: 257 MAGGVDSLN 265


>gi|307943096|ref|ZP_07658441.1| rRNA methylase [Roseibium sp. TrichSKD4]
 gi|307773892|gb|EFO33108.1| rRNA methylase [Roseibium sp. TrichSKD4]
          Length = 279

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 100/260 (38%), Gaps = 9/260 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDW 83
           +   K+++    + +H +Q       G+   + AL       +  L   A +N +A+   
Sbjct: 21  NPIVKEIKGLIAQRKHRTQSGLFVAEGLKLATDALEAGWDVRYLALGPEARENPIAQQAA 80

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHV 141
            +       +  V    +  +  K+   Q + +      + +L  +   ++   + LD V
Sbjct: 81  ASAKARGALILEVNTAILSAMTRKD-NPQ-MVVGVYEQKTVSLSNIDPNSAATWVALDRV 138

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ++R+  A    G++     +   +    ++  G+L H+P I+ +     L  
Sbjct: 139 RDPGNLGTVIRTIDAVGASGVVLVGDCTDPFAVETVRATMGSLFHVPIIKTAK-DAFLDF 197

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              W    +G   +           + + L++G E +GL         ++  +   G   
Sbjct: 198 AKKWPGPVVGTHLEGSVDYRTADYAEPVLLLMGNEQQGLDASMTRVCKTLIRIPQVGQAD 257

Query: 262 ALNVSNAAAVALYI-TQNHF 280
           +LN++ A  + LY   +NH 
Sbjct: 258 SLNLAVATGITLYEIRRNHL 277


>gi|113868019|ref|YP_726508.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
 gi|113526795|emb|CAJ93140.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
          Length = 260

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 96/259 (37%), Gaps = 9/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLD 82
            R++  +K +++    +    +     L GVH   A +    + +  +++ ++   A + 
Sbjct: 6   SRDNALFKHLKTLATSTHQRRKAGQSLLDGVHLAQAYVAARGQPVTCVVSERHYDHAEVA 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHV 141
               L     V  +      +I G   V  G+  +         L A      + +LD V
Sbjct: 66  PVLALIEAERVVVLADALFTQISG---VVNGIDLMLVIETPVGHLPARIEQDCI-ILDGV 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G+ILRSA A            + + S    ++  GA  H+  +    L     +
Sbjct: 122 QDAGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLRAGMGANFHLNIVEHCTLESLAPR 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +       +  SS +   +        +A ++G EG G+        T    +  PG ++
Sbjct: 182 LA---VPLLATSSHADAAVFDTDLRGPVAWVVGNEGAGVSDGWMAHVTRKVGIPQPGGLE 238

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A A+ L+      
Sbjct: 239 SLNVAAATAICLFEAVRQR 257


>gi|331006043|ref|ZP_08329383.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
 gi|330420152|gb|EGG94478.1| tRNA/rRNA methyltransferase (SpoU) [gamma proteobacterium IMCC1989]
          Length = 266

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 108/261 (41%), Gaps = 19/261 (7%)

Query: 33  MQSFNQKSRHTSQPENLF-----LYGVHTVSAALNNPSRKIFQLLATK----NALARLDW 83
           M + N  +   ++ +  F     L+G   V   L +P   ++++  ++      +     
Sbjct: 1   MTNNNTDTEQYTRKKQFFNQVITLFGRKPVLEVLQDPKLTVYRVHLSESNKPQGIISEIL 60

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRNSQL-------- 134
           +        V     Q + +I       QG+ ++   P      D + +  L        
Sbjct: 61  EIAKKREIEVLYHSKQALSRISKNAKQDQGVCIDILCPKHQSYEDFLASVSLSQSPDKTI 120

Query: 135 -LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+ LD + +P N+G I+RS  A   DG++   +   +  +++ K+++G L   P +   
Sbjct: 121 RLIALDRITNPQNLGMIIRSVCAGKIDGLLLPSKGCATIDSLVVKASAGTLFKAPLLHCE 180

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +LT AL +    G    GLSS + + +  +  +  +  +LG E +G+  +          
Sbjct: 181 SLTGALHESKKQGATVYGLSSHATQSISDKQTDQFVIYVLGNETEGMSQEISTLCDKRIS 240

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + M   +++LNV+  A++  +
Sbjct: 241 IPMNNGVESLNVAITASLLAF 261


>gi|255099812|ref|ZP_05328789.1| putative RNA methylase [Clostridium difficile QCD-63q42]
          Length = 176

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 80/170 (47%), Gaps = 2/170 (1%)

Query: 112 QGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           QG+    +       +++ +  + +++LD + DP N+G I+R+A +   D II  K    
Sbjct: 7   QGIIGVVSFKKKKLSESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVD 66

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  + +S  G++  +  I  S   + +  + S  F  +    +++   ++     K+A
Sbjct: 67  IYNPKVIRSTMGSIFDMNIIDASQ-DETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVA 125

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L++G E  G+  +    +  +  + + G  ++LN + ++A+ +Y  + + 
Sbjct: 126 LVIGNEANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKKYL 175


>gi|255321809|ref|ZP_05362959.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
           RM3277]
 gi|255300913|gb|EET80180.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter showae
           RM3277]
          Length = 226

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       + N  + +  +   K     L +   +    P+K V  Q    +    
Sbjct: 1   MIIYGKQLFLHIIKNYKKSVKTVYLAKECDKAL-FSQIVGVGAPIKRVDNQKAQALA-HG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG   E       ++D ++    + VL  ++D  NIGAI+R+A A  C GI+   + 
Sbjct: 59  GNHQGFLAEVEEFEFKSIDEIKKQNFIAVLYGLSDVGNIGAIVRTAHALGCGGIVVVAKN 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA        + +    L ++   GF+    +S  K    +   + K
Sbjct: 119 LAMEG--VLRASSGAAYEANIALVEDGLSLLNELKQVGFKIYATASGGKNA-HEVKFDQK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +AL++G+EG+GL  K    +  +  + M     +LNVS A A+  
Sbjct: 176 VALVMGSEGEGLHKKVLAKSDEIVGIKMKNDWDSLNVSAAFAILC 220


>gi|292670656|ref|ZP_06604082.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647683|gb|EFF65655.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 294

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 99/252 (39%), Gaps = 16/252 (6%)

Query: 41  RHTSQPENLFLYGVHTVS-AALNNPSRKIFQLLATKNALARLDWDANL----PHPFPVKT 95
           R  ++       G+     AA++N   KI     T+NA+A     A L        PV  
Sbjct: 41  RRAAKEGLFTAEGLRLAEMAAVSN--WKIRCAFLTENAVAGERAQALLRILAARRAPVAL 98

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGA 149
           +P      +   E+  QG+ L      + +L  +       +  L +VLD V DP N+G 
Sbjct: 99  IPETMFSNLSETES-QQGILLLMERGKNMSLRELVRQRNDVDPPLYIVLDRVQDPGNVGT 157

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ILR+A A    G+I  +  +   S  + ++  GAL H+P+     + + +  + S     
Sbjct: 158 ILRTADAAGASGVILLRGSADVYSGKVVRATMGALFHVPFAEGIAVMELMDFVRSERVTL 217

Query: 210 IGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
              +  D             + ++ G E  G+  +    +    ++ M G  ++LNVS A
Sbjct: 218 CAAACDDGACMHYAADLRQPLVIVFGNEANGVSEELLAAS-EHIYIPMCGSAESLNVSAA 276

Query: 269 AAVALYITQNHF 280
            A  LY      
Sbjct: 277 VAAVLYEAMRQR 288


>gi|302533483|ref|ZP_07285825.1| rRNA methyltransferase [Streptomyces sp. C]
 gi|302442378|gb|EFL14194.1| rRNA methyltransferase [Streptomyces sp. C]
          Length = 287

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 11/245 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALARLD--WDANLPHPFPVKTVPP 98
           ++       G   V  A+ +   +   + +L AT  A  R     +A +     V     
Sbjct: 30  TKERRFIAEGPQAVREAVEHRGAQGATLIELFATVEAAERYADIVEAAMLAGARVHYASD 89

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + +   V +    QGL      L SP  + ++   +L+ VL HV DP N G +LR A A 
Sbjct: 90  EVLAD-VSQTVTPQGLVGVCHFLDSPFEEILKAGPRLVAVLAHVRDPGNAGTVLRCADAA 148

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++ T       +    +++ G+L H+P      +  A++ + + G + +      +
Sbjct: 149 GADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQAVEGLRAAGVRILAADGAGQ 208

Query: 218 KPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+ E+         A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV L
Sbjct: 209 DDLDAELDAGTMGGPSAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCL 268

Query: 274 YITQN 278
           Y +  
Sbjct: 269 YASAR 273


>gi|148377354|ref|YP_001256230.1| rRNA methylase [Mycoplasma agalactiae PG2]
 gi|148291400|emb|CAL58784.1| rRNA methylase [Mycoplasma agalactiae PG2]
          Length = 243

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 109/272 (40%), Gaps = 39/272 (14%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           S++I S ++    +LR+   D                 E   + G H V  AL      +
Sbjct: 2   SQRITSTQNPKIKQLRKIFND--------------KNSEFFIVEGYHLVEEALK--ENIV 45

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            +L  +    A  D             V    ++ +  K    +G+         P  + 
Sbjct: 46  LELYESDYKTAIYDNSI---------LVSQNVLEALT-KTKNPEGIVALCR--KKPNFEQ 93

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + N   ++ LD+V DP N+G I+R A +F  D +++        +  + +S+ GAL  + 
Sbjct: 94  LGNK--VVFLDNVQDPGNVGTIIRVAKSFGFDTVVS---NVNFYNDKVIRSSQGALFTVN 148

Query: 189 YI--RISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
            +     NLT+ L K    GF+    S D S   +E+    +DK  ++ G EG G+    
Sbjct: 149 LVNYNYDNLTNILLKYKQNGFKIYATSLDKSSVEIEKVKFESDKAVIVFGNEGSGISSAL 208

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + A  + ++ +    ++LNV+  A + LY  
Sbjct: 209 ADIADMLIYVPI--NFESLNVAICAGIVLYEA 238


>gi|254804971|ref|YP_003083192.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668513|emb|CBA05886.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 261

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 96/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +   +    A    +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYI--PEAKMPSEEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   + +V    + KI         LAL   PL       + +    +VLD V 
Sbjct: 66  KLTAVLPEDRIFSVSDGILKKISSLSCADDILALIDIPLGG----TLPDKGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  +  + + S  + ++  GA         ++L   L + 
Sbjct: 122 DPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLRAGMGAHFLSGIYPQADLEIWLARY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E      A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQAVLYGEDLCGPTAWVFGNEGAGVGKAVLDRADKYVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|46445775|ref|YP_007140.1| hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399416|emb|CAF22865.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 249

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 18/252 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            H   K +    + SR+  + + L L G   +   L+     + +++ T      L ++ 
Sbjct: 10  QHPFVKHLVKLRENSRYRLEHKALILEGSKPIREVLS----FVKKIIYTSAYAPYLTFE- 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                F    V    + KI G  +  +G+  E      P   +++ +Q ++VLD +NDP 
Sbjct: 65  ----GFEKWQVTEGIMKKISG-NSTPEGVIAEI---QMPPFSSLKQAQNILVLDGINDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A+AF  +GI          +  + +SA GA   IP  R  N+ + L+ +   
Sbjct: 117 NLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRSARGAHFKIPLRR-GNINE-LELLAKQ 174

Query: 206 G-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G FQT+       + L+  +   +  LI+G E  G  P+  + A     + M G +++LN
Sbjct: 175 GNFQTLVADLKG-QILKSTVSKKRKILIMGNEAHGPSPEVFKFA-EPICIPMSGEMESLN 232

Query: 265 VSNAAAVALYIT 276
           V+ A  + LY  
Sbjct: 233 VAVAGGILLYAL 244


>gi|50310205|ref|XP_455122.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644258|emb|CAG97829.1| KLLA0F00946p [Kluyveromyces lactis]
          Length = 400

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 113/317 (35%), Gaps = 52/317 (16%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
            KK  ++I   + S   + R +  +Y KM            P   +++G ++V +AL   
Sbjct: 83  KKKYYDRIKQEESSKREQFRSHRSEYTKMHPLQG---LKPNPLVDYVFGTNSVISALTAK 139

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            R+ F  L     L          +    + V    ++ +    AVH  + LE  PL  P
Sbjct: 140 KREYFVKLHHYGPLNTQIQSLCSKNNIQTEEVDKHRLN-LYTNYAVHNNVVLECKPLQPP 198

Query: 125 TLDAV--------------------------------RNSQLLMVLDHVNDPHNIGAILR 152
            L  +                                + + L + LD V DPHN+GAI+R
Sbjct: 199 ELSHLGLVNHEACTFDKSEIDYDQAVNTREKFMTNDNKKNPLGIYLDEVVDPHNVGAIIR 258

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA     D ++ + +     S V++K +SG +E +P    +      +K    G      
Sbjct: 259 SAYFLGADFMVLSHKNCAPLSPVVSKVSSGTMELLPIFTTAKPLQFFEKSKQDGGWMFVT 318

Query: 213 S----SDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETATSMAHLHM------- 256
           S    S     L     +       + L++G EG G+R      +     +         
Sbjct: 319 SHMSISQKGNHLTMNELSGMLNELPVVLVVGNEGNGVRTNLLNRSDFTVEIPFGRDPTEG 378

Query: 257 PGIIKALNVSNAAAVAL 273
              I +LNVS A A+ +
Sbjct: 379 RNTIDSLNVSVATALLI 395


>gi|223038607|ref|ZP_03608900.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
           RM3267]
 gi|222880009|gb|EEF15097.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter rectus
           RM3267]
          Length = 226

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       + N  + +  +   K     L +   +    P+K V  Q    +    
Sbjct: 1   MIIYGKQLFLHIIKNYKKSVKTVYLAKECDKAL-FSQIVGVGAPIKRVDNQKAQALA-HG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG   E       +LD ++    + +L  ++D  NIGAI+R+A A  C G++   + 
Sbjct: 59  GNHQGFLAEVEEFEFKSLDEIKKQNFIAILYGLSDVGNIGAIVRTAHALGCGGVVIVAKN 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA        + +    L ++   GF+    +S  K    +   + K
Sbjct: 119 LAMEG--VLRASSGAAYETDIALVEDGLSLLNELKQVGFKIYATASGGKNA-HEVKFDRK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +AL++G+EG+GL  K    +  +  + M     +LNVS A A+  
Sbjct: 176 VALVMGSEGEGLHKKVLTKSDEIVGIKMKNDWDSLNVSAAFAILC 220


>gi|282854556|ref|ZP_06263891.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|289427763|ref|ZP_06429474.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|295130948|ref|YP_003581611.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|282582138|gb|EFB87520.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|289159027|gb|EFD07220.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|291375145|gb|ADD98999.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
          Length = 271

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 8/238 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +     + G   V  AL  P  K+  L  +  A      +        V  +  + ++ +
Sbjct: 34  ESGLFLVEGAQAVREALAWPG-KVNLLATSDPARDAEHVEVATCRGVRVVVLTDEDVNAL 92

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+      +    L      +L ++   V DP N G ++R A AF  D +I 
Sbjct: 93  SDT-VTSQGIFAVCRQVTRRELPD-EAVRLAVICAQVRDPGNAGTVIRCADAFGADCVIL 150

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T+      +    +S+ G++ H+P +    L DA++  H      +         L+   
Sbjct: 151 TRGSVDPHNPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADG-GGHSLDVVA 209

Query: 225 KND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++      IA ++G E  GL    +  A  +  + M G  ++LN+S AAAV LY T +
Sbjct: 210 RSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATAS 267


>gi|319781799|ref|YP_004141275.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167687|gb|ADV11225.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 271

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 12/262 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWD 84
           + +D +     + + R  +  +  F+     V   L    R      L  +N LA LD  
Sbjct: 8   DPQDPRVAAYLDIRERDLAGRQGRFVAEGKVVLDLLLTTGRFAAESALVLENRLAGLDKI 67

Query: 85  A-NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAVRNSQLLMVLD 139
               P   PV       +D I G   +H+G+               LD +    L++VL 
Sbjct: 68  LSKAPADLPVYVATSAVMDAIAGFH-MHRGILAMGRKGAPQPAEALLDGLPPRALVVVLV 126

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + +  N+G+I R+A AF  D ++              + + GA   IP+   ++     
Sbjct: 127 GIANHDNVGSIFRNAAAFGADAVLLDATCCDPLYRKAIRVSVGAALKIPFASFTDTAGFT 186

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +   GF+   LS   K  +    +++++AL LG EG+GL      +      + M   
Sbjct: 187 TTLARRGFEQFALSPRGKTDIRDAQRSERLALYLGTEGEGLPDDLLASL-HNVRITMAEG 245

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LNV+ A+A+AL+    HF+
Sbjct: 246 FDSLNVAAASAIALH----HFS 263


>gi|239940054|ref|ZP_04691991.1| putative rRNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|239986543|ref|ZP_04707207.1| putative rRNA methylase [Streptomyces roseosporus NRRL 11379]
          Length = 281

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/245 (23%), Positives = 94/245 (38%), Gaps = 12/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R        H     V     
Sbjct: 28  KERRFIAEGPQAVREAAAHRGGDGEPTLIELFATPEAADRYADIVEAAHTAGARVHLADA 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAF 157
             +   V +    QGL      L SP  + +     L+ VL +V DP N G +LR A A 
Sbjct: 88  DVLAD-VSQTVTPQGLIGVCRFLDSPFQEILDARPTLVAVLANVRDPGNAGTVLRCADAA 146

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I T       +    +++ G+L H+P      +  A+Q +   G + +       
Sbjct: 147 GADAVILTDASVDLYNPKSVRASVGSLFHLPVAVGVPVDQAVQGLRDAGVRILAADGAGA 206

Query: 218 KPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+ E+         A I G E  GL  +T+  A ++  + + G  ++LN++ AAAV L
Sbjct: 207 DDLDDELDAGTMGTPTAWIFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCL 266

Query: 274 YITQN 278
           Y +  
Sbjct: 267 YASAR 271


>gi|227497644|ref|ZP_03927862.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226832915|gb|EEH65298.1| RNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 306

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/266 (22%), Positives = 111/266 (41%), Gaps = 23/266 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           ++ +  ++S   ++ E   + G   V  A+++    I  L AT++A AR     +     
Sbjct: 25  RVAALARRST-RTKYERFLVEGPQGVREAVHHACGDILDLYATQDASARYPEILSEARAA 83

Query: 92  PVKT--VPPQTIDKIVGKEAVHQGLALET---------------APLLSPTLDAVRNSQL 134
            V T  V P  +  +       QGL                   AP ++     + +++L
Sbjct: 84  GVYTHLVTPAVMAAMSADA---QGLLAVVRTQAVARPSAAGGSRAPQVAELKQVLDSARL 140

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + VL    DP N G I+R+A A   D ++  +      +  + +S +G+L H+P +    
Sbjct: 141 VAVLTQAQDPGNAGTIIRAADAAGADAVVLARGSVDPTNPKVVRSTAGSLFHLPVLWGLG 200

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L +  Q +H  G   +      +  L   + +     A  LG E  GL P++   A ++ 
Sbjct: 201 LEEISQAVHGAGLAILAADGRGELNLFESETLLARPTAWWLGNEAHGLSPESLTQADAVV 260

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + + G  ++LNV+ AAAV  Y +  
Sbjct: 261 SIPLYGQAESLNVATAAAVCFYASAR 286


>gi|157164272|ref|YP_001466038.1| RNA methyltransferase [Campylobacter concisus 13826]
 gi|112801236|gb|EAT98580.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter concisus
           13826]
          Length = 226

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       LN   + + ++  +K    +L +         +  V  Q    +    
Sbjct: 1   MIIYGKQLFLHILNKRPQILEEIYLSKECDKKL-FSKICGTGKKIIRVDNQKAQSMA-HG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG     +         ++    + VL  ++D  NIGAI RSA A  C+G++   + 
Sbjct: 59  GNHQGFLASVSEFEFSDFSELKKLNFIAVLYGISDVGNIGAIARSAYALGCEGLVIVTKS 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                  + +S+SGA   IP     +    L ++   GF+    +S+ K  +++     K
Sbjct: 119 V--NMQGVLRSSSGAAYEIPIAIFEDGLSLLNELKQCGFRLYATASNGKN-IKEMKFAGK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL++G+EG+G+  K          + +     +LNVS A A+  
Sbjct: 176 RALVMGSEGEGIPQKALAKCDECVGIKLKDGWDSLNVSAAFAIIC 220


>gi|294625418|ref|ZP_06704050.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600293|gb|EFF44398.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 305

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 95/234 (40%), Gaps = 8/234 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDK 103
              + LYG++ V A        + +L  ++  + +        +      + V    + K
Sbjct: 60  AREVRLYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSK 119

Query: 104 IVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    A H+G+  E       PL        +   L + LD V +PHN GAILRS+  F 
Sbjct: 120 LAAS-AHHEGVVAEVLRVTPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFG 178

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++     +   S   A+ A G  E +P +++ +   AL ++   GF       D  +
Sbjct: 179 VAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQ 238

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +       ++  ++GAE +G+             +   G +++LNV++A AV 
Sbjct: 239 DVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 292


>gi|297571490|ref|YP_003697264.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931837|gb|ADH92645.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 281

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 20/254 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY K+     +    ++       G   +  A+N         + +   L  L       
Sbjct: 15  DYTKLTDVALRKSLEAERGLYMAEGDKVIGRAINAGHTP-RSFIMSARWLETLQPIIEQA 73

Query: 89  ------HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVR---NSQLLMVL 138
                    PV     + I+++ G   VH+G LA    P L    + +     ++ ++VL
Sbjct: 74  TGHADGGDIPVYVASEELIEELTGFH-VHRGALAAMNRPELPSVEEFLGPDSTARRIIVL 132

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           +++ +  N+GA+ RS  A   D ++ T   S        + + G +  +P+ RI +   +
Sbjct: 133 ENLVNHTNVGAVFRSMAALGFDAVLLTDSASDPLYRRAVRVSMGTVFQVPWTRIPHWPRS 192

Query: 199 LQKMHSWGFQTIGLSS-DSKKPLEQE-------IKNDKIALILGAEGKGLRPKTQETATS 250
           +Q +   G+ T  L+  D   PL+Q          + K+ALILG EG GL   T   A  
Sbjct: 193 MQMLKDRGWITASLALRDDALPLDQFAQLPDVMAPDSKVALILGTEGDGLSAATISHADH 252

Query: 251 MAHLHMPGIIKALN 264
              + M G + +LN
Sbjct: 253 AVVIPMAGGVDSLN 266


>gi|296129474|ref|YP_003636724.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296021289|gb|ADG74525.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 271

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 105/263 (39%), Gaps = 19/263 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++   +S    +     + G   V  A+   S ++  +  T +A AR          
Sbjct: 10  KAVRALASRS-VRRRTGTFLVEGPQAVREAVAPGSPRVHDVYVTVDAAARYPEIVAAARD 68

Query: 91  FP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147
               V+   P  +D +       QG+      + +   D + R  +L+ VL HV DP N 
Sbjct: 69  VGARVRNGTPDVLDAMSADA---QGVVAVVDQVGAGLDDVLTRRPRLVAVLAHVRDPGNA 125

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G +LR+A A   D ++ T       +    +S +G+L H+P +    L DA+  + S G 
Sbjct: 126 GTVLRAADAAGADAVVLTASSVDVHNPKTVRSTAGSLFHLPVVPGPELPDAVGALRSAGL 185

Query: 208 QTIGLSSDSKKPLEQE------------IKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             +  +   +  L+                +   A + G E  GLR +    A +   + 
Sbjct: 186 TVLAAAGSGEHDLDDLLDVVGAAPAGVPDLSRPTAWVFGNEAWGLRDEDLALADATVRVP 245

Query: 256 MPGIIKALNVSNAAAVALYITQN 278
           + G  ++LN++ AA V LY +  
Sbjct: 246 LRGRAESLNLATAATVCLYASGR 268


>gi|325928467|ref|ZP_08189658.1| rRNA methylase [Xanthomonas perforans 91-118]
 gi|325541184|gb|EGD12735.1| rRNA methylase [Xanthomonas perforans 91-118]
          Length = 356

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 96/234 (41%), Gaps = 8/234 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDK 103
              + LYG++ V A      + + +L  ++  + +        +      + V    + K
Sbjct: 111 AREVRLYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSK 170

Query: 104 IVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    A H+G+  E       PL        +   L + LD V +PHN GAILRS+  F 
Sbjct: 171 LAAS-AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFG 229

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++     +   S   A+ A G  E +P +++ +   A+ ++   GF       D  +
Sbjct: 230 VAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQ 289

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +       ++  ++GAE +G+             +   G +++LNV++A AV 
Sbjct: 290 DVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 343


>gi|313826065|gb|EFS63779.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL063PA1]
          Length = 273

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 8/238 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +     + G   V  AL  P  K+  L  +  A      +        V  +  + ++ +
Sbjct: 36  ESGLFLVEGAQAVREALAWPG-KVNLLATSDPARDAEHVEVATCRGVRVVVLTDEDVNAL 94

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+      +    L      +L ++   V DP N G ++R A AF  D +I 
Sbjct: 95  SDT-VTSQGIFAVCRRVTRRELPD-EAVRLAVICAQVRDPGNAGTVIRCADAFGADCVIL 152

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T+      +    +S+ G++ H+P +    L DA++  H      +         L+   
Sbjct: 153 TRGSVDPHNPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADG-GGHSLDVVA 211

Query: 225 KND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++      IA ++G E  GL    +  A  +  + M G  ++LN+S AAAV LY T +
Sbjct: 212 RSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATAS 269


>gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 251

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 107/250 (42%), Gaps = 9/250 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K ++S  Q+ ++  +    F  G+  +  +L +  +  F L+        L    
Sbjct: 8   DNKYIKLVKSL-QQGKYRQKNSMFFDEGIKNIELSLKSNYKMNFVLIREDFKDTSLIKSL 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     V  + I   +      QG+           +     S  +++LD + DP 
Sbjct: 67  EEKLGEDKILVLNEKIFTSISDTVNSQGIIAVYDMKKDEDI----KSDKILILDRIQDPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG I+R+A +FS + I  +K  +   S  + ++  G++  + ++++ +    + K+ S 
Sbjct: 123 NIGTIIRTAESFSINTIFYSKGTADVFSPKVVRATMGSIYFVNFVKLDD----ISKLKSE 178

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G++      ++    +    ++K+ALILG E  G+       +     + M G  ++LNV
Sbjct: 179 GYKIYASCLENAISSKSAFTDEKMALILGNESVGISEDLINQSDKKIKIDMTGNAQSLNV 238

Query: 266 SNAAAVALYI 275
           + A A+ +Y 
Sbjct: 239 ATAGAILIYE 248


>gi|220903658|ref|YP_002478970.1| TrmH family RNA methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867957|gb|ACL48292.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 268

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 26/258 (10%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL---ARLDWDANLPHPFPVKTVPP 98
           H    E   L G+  V   L++  +++  +   K      AR   D    +      V  
Sbjct: 2   HIQSEEAPLLPGLKPVLELLSSDPQRVDCVFCKKGLRSPEAREVQDLCRKNDIRFTLVEQ 61

Query: 99  QTIDKI-------------VGKEAV-HQGLALETAPLLSPTLD----AVRNSQL--LMVL 138
             +D++              G++AV HQG+    A      L+    AV  + L  ++ L
Sbjct: 62  AALDRLCRPGGPRRGDAREAGRDAVAHQGVVARLAATSFCELEHIFAAVEQAPLPIILAL 121

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+G + R+  A    GII  +  S        +SA+GALEH+P  R++NL  A
Sbjct: 122 DQVQDPGNVGTLCRTLYALGGAGIILPRHNSAYLGPAARRSAAGALEHLPVARVTNLGHA 181

Query: 199 LQKMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           L      G    G       +      E       L+LG E KGLRP   +    M  + 
Sbjct: 182 LDSAEEAGLTIYGAGGQNGPASVDAFAEPVRLPAVLVLGNEEKGLRPGIVKRCAHMLRIP 241

Query: 256 MPGIIKALNVSNAAAVAL 273
           +     +LNV+ A A+ L
Sbjct: 242 LARSFDSLNVAQAGAILL 259


>gi|50842892|ref|YP_056119.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
 gi|289426403|ref|ZP_06428146.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|50840494|gb|AAT83161.1| putative rRNA methylase [Propionibacterium acnes KPA171202]
 gi|289153131|gb|EFD01849.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|313808089|gb|EFS46566.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA2]
 gi|313813590|gb|EFS51304.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL025PA1]
 gi|313819728|gb|EFS57442.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL046PA2]
 gi|313823743|gb|EFS61457.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL036PA2]
 gi|313829638|gb|EFS67352.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL063PA2]
 gi|313840042|gb|EFS77756.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL086PA1]
 gi|314919433|gb|EFS83264.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL050PA1]
 gi|314923955|gb|EFS87786.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL001PA1]
 gi|314954516|gb|EFS98922.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL027PA1]
 gi|314962173|gb|EFT06274.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL002PA2]
 gi|314963802|gb|EFT07902.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL082PA1]
 gi|314976761|gb|EFT20856.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL045PA1]
 gi|314984483|gb|EFT28575.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA1]
 gi|314986660|gb|EFT30752.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA2]
 gi|314990775|gb|EFT34866.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL005PA3]
 gi|315079654|gb|EFT51644.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL053PA2]
 gi|315100540|gb|EFT72516.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL046PA1]
 gi|327327988|gb|EGE69757.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL103PA1]
 gi|327329586|gb|EGE71344.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL096PA2]
 gi|327444366|gb|EGE91020.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL043PA2]
 gi|327452174|gb|EGE98828.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL092PA1]
 gi|327452807|gb|EGE99461.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA3]
 gi|327457884|gb|EGF04539.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL083PA2]
 gi|328755365|gb|EGF68981.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Propionibacterium acnes HL087PA1]
 gi|328760149|gb|EGF73726.1| putative 23S rRNA methyltransferase [Propionibacterium acnes
           HL099PA1]
 gi|332675828|gb|AEE72644.1| tRNA/rRNA methyltransferase YsgA [Propionibacterium acnes 266]
          Length = 273

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 8/238 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +     + G   V  AL  P  K+  L  +  A      +        V  +  + ++ +
Sbjct: 36  ESGLFLVEGAQAVREALAWPG-KVNLLATSDPARDAEHVEVATCRGVRVVVLTDEDVNAL 94

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+      +    L      +L ++   V DP N G ++R A AF  D +I 
Sbjct: 95  SDT-VTSQGIFAVCRQVTRRELPD-EAVRLAVICAQVRDPGNAGTVIRCADAFGADCVIL 152

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T+      +    +S+ G++ H+P +    L DA++  H      +         L+   
Sbjct: 153 TRGSVDPHNPKTVRSSVGSIFHLPVVVGVELADAVEWAHQHQMSVLAADG-GGHSLDVVA 211

Query: 225 KND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++      IA ++G E  GL    +  A  +  + M G  ++LN+S AAAV LY T +
Sbjct: 212 RSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLNLSTAAAVVLYATAS 269


>gi|322697910|gb|EFY89685.1| RNA methyltransferase, putative [Metarhizium acridum CQMa 102]
          Length = 556

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 119/334 (35%), Gaps = 77/334 (23%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHT---------SQPENLFLYGVHTVSAALNNPSRK 67
           +    + R  +R+   +Q    + R           +   + FLYG   V AAL    R+
Sbjct: 189 NPQKQRSRIENREDDSIQDAVARPRRRAMLPMTIKYTTAASQFLYGRSVVKAALQQGRRQ 248

Query: 68  IFQLLATKNALAR------LDWDANLPHPFPVKTVPPQT---IDKIVGKEAVHQGLALET 118
           +++L        R         +       PV  VP +    +DK+      H G  LET
Sbjct: 249 LYKLYVYGGENRRGFDDNDAIINLAKARGVPVTIVPNEDQRLMDKM-SMGRPHNGFVLET 307

Query: 119 APLLSPTLDAVR---------------------------------------NSQLLMVLD 139
           +PL    + A+                                           L+++L 
Sbjct: 308 SPLPQLPVKALGSLEESPSKLGFHIELVHQTMEQKAINGENTFVPKANNSATKPLVLLLH 367

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+GA+LR+A     D +  T R S + + V+ KSA+GA E +    + +  + L
Sbjct: 368 EILDPGNLGALLRTASYMGVDAVGITSRNSSALTPVVLKSAAGAAEEVTIFTVDSPVEFL 427

Query: 200 QKMHSWGFQTIGLSS---------DSKKPLEQE-------IKNDKIALILGAEGKGLRPK 243
           +   + G++T    +            K +  +       +      L+LG EG GL  +
Sbjct: 428 KGSRAAGWKTYAAVAPPESKLLKIHGDKFISTDYVEQTSPLDQHPCVLVLGNEGHGLPRQ 487

Query: 244 TQETATSMAHLH---MPGIIKALNVSNAAAVALY 274
            +  A     +        + +LNVS AA +  +
Sbjct: 488 VKVAADFELSVPRFVQGSSVDSLNVSVAAGLLCH 521


>gi|320449193|ref|YP_004201289.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
 gi|320149362|gb|ADW20740.1| 23S rRNA methyltransferase [Thermus scotoductus SA-01]
          Length = 257

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 101/255 (39%), Gaps = 7/255 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K + +  ++ R   +     + G   V   L     ++  LL    A      D  
Sbjct: 8   NPKVKALAALKER-RERERTGLFLVEGRREVERTLR-AGLQLETLLLGPKATP---EDQA 62

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           L    P   +  + ++++  +E     + +   P  +     +    L++VL  +  P N
Sbjct: 63  LAGSAPTLELSQEAMERVSVRENPPPVIGVFRLPHKTLKEVQLPQDPLVLVLLGLEKPGN 122

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GAILRSA     D ++  +      S  + ++++G +  +P   ++   +A + +   G
Sbjct: 123 LGAILRSADGAGVDLVLVAEG-VDLYSPQVIRNSTGVVFSLPVYPVAE-EEAARFLEEKG 180

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              +  +   +K   +E     +A +LG E +GL       A     + M G+  +LNVS
Sbjct: 181 LFLVAATPRGEKVYWEENYQRGVAFLLGTEDEGLSEAWLARAGVRVRIPMRGVADSLNVS 240

Query: 267 NAAAVALYITQNHFA 281
            +AA+ LY       
Sbjct: 241 VSAALLLYEALRQRG 255


>gi|194289777|ref|YP_002005684.1| tRNA/rRNA methyltransferase protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193223612|emb|CAQ69619.1| putative TRNA/RRNA METHYLTRANSFERASE PROTEIN [Cupriavidus
           taiwanensis LMG 19424]
          Length = 260

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 97/259 (37%), Gaps = 9/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-ARLD 82
            R++  +K +++    +    +     L GVH   A +    + +  L++ ++   A + 
Sbjct: 6   SRDNALFKHLKALAGSTHQRRKAGQSLLDGVHLAQAYVAARGQPVTCLVSERHYDHAEVA 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHV 141
                     V  +      +I G   V  G+  +      +  L A      + +LD V
Sbjct: 66  PLLAEVDSERVVVLADALFTQISG---VVNGIDLMLVIETPAGHLPARIEQDCI-ILDGV 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G+ILRSA A            + + S    ++  GA  H+  +    L     +
Sbjct: 122 QDAGNVGSILRSAAAAGIRDAFLATGCAFAWSVKTLRAGMGANFHLNIVEHCTLEALAPR 181

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +       +  SS ++  +        +A ++G EG G+        T    +  PG ++
Sbjct: 182 LA---IPLLATSSHAEAAVFDTDLRGPVAWVVGNEGAGVSEGWMAHVTRKVGIPQPGGME 238

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A A+ L+      
Sbjct: 239 SLNVAAATAICLFEAVRQR 257


>gi|154245126|ref|YP_001416084.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
 gi|154159211|gb|ABS66427.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
          Length = 268

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 111/254 (43%), Gaps = 10/254 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWD 84
           + RD ++     ++    ++ E +       VS      S  +  LL ++    RL D  
Sbjct: 15  DFRDVRERDLVGRQGAFMAEGEVVL---RLLVSRLGGADSHCLRALLLSEAQAQRLGDVI 71

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDH 140
           A LP   PV     + +D++VG   +H+G+         P  +  L+ +    L++    
Sbjct: 72  AALPQDVPVYVAGQKVMDQVVGF-PIHRGILALGVARPLPEPAALLERLGERALVVAALG 130

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + +  N+G I R+A AF  D ++              + + GA   +P+ R+++   A++
Sbjct: 131 LTNHDNMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFARVADGAAAVE 190

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + + GF+ + LS   ++PL + ++  ++A + G EG GL        T    + M    
Sbjct: 191 LLKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGLPDAVMAM-TRTVAIPMAAGF 249

Query: 261 KALNVSNAAAVALY 274
            +LNV+  + + L+
Sbjct: 250 DSLNVATTSGIVLH 263


>gi|283777897|ref|YP_003368652.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283436350|gb|ADB14792.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 272

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 113/284 (39%), Gaps = 29/284 (10%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQ 70
           I SL++                Q+   + R    + + + + G   ++ AL      + +
Sbjct: 5   ITSLQNLRVK------------QAVKLRERKARDEQQRIIIDGEREITRALGAGVVAL-E 51

Query: 71  LLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
           L         A ++            +  V  Q ++K+   + V + + +  +P  SP L
Sbjct: 52  LFVLDGVELSATSQQTMRHARESGATILPVSRQVMEKLAFGDRVEEVILVAESP--SPAL 109

Query: 127 D-------AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           D       A +   L+ V++ V  P N+GAILRSA A   DG+I         +    ++
Sbjct: 110 DTFLQDKLAAKRDLLVAVVEGVEKPGNLGAILRSADAAGIDGVIVCGARLDLYNPNAIRA 169

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + GAL  +P I ++ +  AL  +    FQ +    D            + A+ILG+E +G
Sbjct: 170 SLGALFTLPVIGMT-VPQALAWLRMHQFQMLATRVDGAIDYTTADLRGRTAIILGSEAEG 228

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHFAK 282
           L  +          L M G + +LN+S  AA+  Y   +   AK
Sbjct: 229 LSREWLGDDIRAISLPMLGTVDSLNLSVTAAILFYEALRQRRAK 272


>gi|317177613|dbj|BAJ55402.1| hypothetical protein HPF16_0805 [Helicobacter pylori F16]
          Length = 227

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 4/224 (1%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            +YG   +   LN+   K+ ++  +K    +  +      P  +K V  +    +  K  
Sbjct: 4   VIYGKQVLMRILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGG 61

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            HQG+       L+  L  V+  Q L+VL  + D  NIG I RSA     +G+I      
Sbjct: 62  NHQGVLARVELPLALPLKEVKKVQKLLVLCGITDVGNIGGIFRSAYCLGMEGVILDFAKE 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            +   ++ +S+ G +  +P+    N  D + ++ + GF  +G S      +E      K 
Sbjct: 122 LAYEGIV-RSSLGLMYDLPFSVAPNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKC 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 180 ALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILM 223


>gi|262277080|ref|ZP_06054873.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
 gi|262224183|gb|EEY74642.1| SpoU rRNA Methylase family [alpha proteobacterium HIMB114]
          Length = 242

 Score =  176 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 121/232 (52%), Gaps = 9/232 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
           +  +L G HTV+ AL N +  IF++ L++KN +  +       +   +K    Q IDK+ 
Sbjct: 8   KEFWLGGKHTVNHALKNENNAIFKVFLSSKNNINEIPK--KYLNLISIK--SHQEIDKLF 63

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +  HQG A++     +     +R + +    +++L++V D  NIG+I+RS VAF    
Sbjct: 64  STKINHQGYAVKIKERKTFQFSELRKNIIKYDEIIILNNVFDDRNIGSIIRSCVAFDVKC 123

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I  K    + S ++ KSASG +E+I    +SNL + ++ +    +    L  +S K + 
Sbjct: 124 LIVEKNNFRAGSELMNKSASGGMEYIDIYLVSNLNNVIKVLQQNAYWVYSLDGESNKNIF 183

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               N K A I G+EG G++   ++ +  +  + +   I++LN+SN+ ++ L
Sbjct: 184 DIKFNKKSAFIFGSEGDGIKSLVKKNSDEIISIPINKKIESLNLSNSVSIVL 235


>gi|303233310|ref|ZP_07319981.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
 gi|302480610|gb|EFL43699.1| RNA methyltransferase, TrmH family [Atopobium vaginae PB189-T1-4]
          Length = 281

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 109/264 (41%), Gaps = 17/264 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDA 85
           Y ++ +   +SR       L L     +  AL      +  +L  +      ++ L+   
Sbjct: 17  YTQLTAHQLQSRGNPSSAKLILESQFVIKTALERGY-PLESILVCREHFDTLMSTLEPFT 75

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVND 143
                 P+ T+P + +  +VG  +VH+G           T+ ++   ++ L+ VL+ ++D
Sbjct: 76  AAISELPIYTLPKEEMSTLVGF-SVHRGYFACMPRPSRRTVASLNLNSASLICVLETISD 134

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR------ISNLTD 197
             NIGA+ RSA AF  DGII     +   +    +++ GA+  +P+ +       +   D
Sbjct: 135 VSNIGALFRSAAAFGVDGIILNASCADPYNRRSVRTSMGAVLSLPWAQAASATSHTWAAD 194

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQETATSMAHL 254
               + S GF  I  + D        ++       AL  G+EG GL  + +        +
Sbjct: 195 TACVLSSHGFVNIACALDDNAMSLNAVQMQSFSKKALWFGSEGWGLSQEARAACDMSVMI 254

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            M   I +LNV+ ++AV  +    
Sbjct: 255 PMQRGIDSLNVAASSAVFFWECAR 278


>gi|298492725|ref|YP_003722902.1| tRNA/rRNA methyltransferase SpoU ['Nostoc azollae' 0708]
 gi|298234643|gb|ADI65779.1| tRNA/rRNA methyltransferase (SpoU) ['Nostoc azollae' 0708]
          Length = 270

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 104/276 (37%), Gaps = 22/276 (7%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF 69
           + SL++S   ++R+ H            ++   + +   L G H +  A     P   + 
Sbjct: 2   LTSLQNSLVKQIRKLH-----------STKERHKQQLFLLEGTHLLEEACAANYPLEVVC 50

Query: 70  QLLATKNALARL------DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             L  + A  +L        DA+       + V  + +  I        G+         
Sbjct: 51  CTLQWQQAHPQLWSEVCSRCDASGGGSHRAEVVSEEILAAIA-TTVQPDGVVATAKRSQQ 109

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            T   V  + L++ ++ + DP N+G ++R+A A    G+  +      ++  + ++++G 
Sbjct: 110 QT--QVPLTGLVLGVETLQDPGNLGTMIRAAAAAGASGLWLSDDSVDLDNPKVLRASAGQ 167

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              +      +L   +Q+    G Q I     +     +        ++LG EG GL   
Sbjct: 168 WFRLDKAVSPDLKATVQQCQQAGMQVIATLPTASLTYWEVDWRKPSLILLGNEGAGLSDD 227

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               A +   + +   + +LNV+ AAA+ LY  Q  
Sbjct: 228 LAAMADTQVKIPLNPGVDSLNVAIAAALMLYEAQRQ 263


>gi|54023885|ref|YP_118127.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54015393|dbj|BAD56763.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 279

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 106/245 (43%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--V 96
           ++ H  +       G + V+AAL+    ++ +L  +  A  R            V+T  V
Sbjct: 29  RAAHRRRTGLFLAEGANAVTAALDTG--RVRELFYSAAAAEREHELVATAAATGVRTTLV 86

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAV 155
             +  + + G+     GL      +  P  + + R+ +LL V   + +P N G ++R A 
Sbjct: 87  SDRAAEHL-GETVTAPGLVAVCEQIDVPLPEVLARDPRLLAVPVEIAEPGNAGTLIRVAD 145

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   DG++         +    ++++G+L H+P +R   +   L  +H+ G   +  ++D
Sbjct: 146 AVGADGVVLAGHTVDPHNGKCVRASAGSLFHVPVVRGREVVPTLDALHAAGLTLLATAAD 205

Query: 216 SKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  L++        +A + G E  GL P     A     + + G  ++LN++ AAA+ L
Sbjct: 206 GEVVLDEADEILAGPVAWLFGNEAHGLDPAVAARADHRVRIPIHGRAESLNLAAAAAICL 265

Query: 274 YITQN 278
           Y +  
Sbjct: 266 YASAR 270


>gi|302528045|ref|ZP_07280387.1| predicted protein [Streptomyces sp. AA4]
 gi|302436940|gb|EFL08756.1| predicted protein [Streptomyces sp. AA4]
          Length = 266

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 99/237 (41%), Gaps = 7/237 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVP 97
           +     +       GV+ V++AL +    + +L  T+ A A         P   P+    
Sbjct: 28  RRAEREKTGRFLAEGVNAVTSALAHG--TVHELFVTERAAAAHPSLVEAAPRVSPIT--- 82

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +     + +    QG+    + +  P    + +++L++VL  V +P N G ++R A A 
Sbjct: 83  -ERAAAGLSETVTPQGIVAVCSLVDRPLETVLASARLVVVLVDVAEPGNAGTVIRVADAA 141

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++         +    ++A+G+  H+P  R  N+   L  + + G +T+     + 
Sbjct: 142 GADAVVLAGDTVDPHNGKSVRAAAGSTFHVPLARARNIPAVLTALRAAGLRTLAAHGYAS 201

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             LE     D +A I G E  GL      +      + + G  ++LN++ AAAV +Y
Sbjct: 202 ASLETVRFGDPVAWIFGNEAHGLPEDVLSSVDEAVRIPLYGKAESLNLATAAAVCVY 258


>gi|187924418|ref|YP_001896060.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
 gi|187715612|gb|ACD16836.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia phytofirmans PsJN]
          Length = 275

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 11/248 (4%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H   A L+   +    +  T  AL 
Sbjct: 16  KAITSRDNPLYKRLKALAGSTHQQRKSGHALLEGFHLAGAYLDVAGQPEMCI-VTDGALR 74

Query: 80  RLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLM 136
             +  A +       V T+P     ++     VH  G  L    L +P  D V  +   +
Sbjct: 75  HDEAQAIVARIEDHRVVTLPDALFGQLS--NVVHGVGTLLLVEKLDTPLPDTVAQT--CL 130

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V D  N+G+ILRSA A     +      + + S+ + +S  GA   +     +   
Sbjct: 131 VLDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDAEAQ 190

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             ++++       +   S   + +     +  +A + G EG G+    ++  +    +  
Sbjct: 191 ALIERLA---VPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQIWRDKVSLRVTIPQ 247

Query: 257 PGIIKALN 264
           PG +++LN
Sbjct: 248 PGGMESLN 255


>gi|317485211|ref|ZP_07944092.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923502|gb|EFV44707.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 286

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/285 (24%), Positives = 114/285 (40%), Gaps = 19/285 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I     S     R   + +++  S    S   S+ E   L GV  V   L     +I  +
Sbjct: 2   ITEKNTSPRKAFRSAPKAFEQDASLENASCSDSKEEQAVLSGVKPVLELLEREPERIDAV 61

Query: 72  LATKN-ALARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLAL--------ETAP 120
           L  K       D   +L     V+      Q++D++    A HQG+          E A 
Sbjct: 62  LVRKGKRSQDTDRILDLCRTAKVRFTLADAQSLDRLCP--AGHQGVVARLFEAGFTEFAD 119

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           LL+   DA     L++VLD V DP N G + R+  A    G++  +       A   ++A
Sbjct: 120 LLTDATDAPL--PLILVLDQVQDPGNAGTLARTLYAMGGAGLVIPRHNGTFLGAGARRAA 177

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
           +GALE +P  ++ N+  AL +    GF   G +  +          +    L+LG E  G
Sbjct: 178 AGALERLPVAKVMNIARALDEARDAGFLIYGAAFGEGSLDAFTTRLHTPALLVLGNEEHG 237

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQNHFAK 282
           +RP+  +    + H+ M     +LNV+ A  +    +  Q H  K
Sbjct: 238 IRPQVAKRCHHLLHIPMLRTFDSLNVAQAGGILTSCFARQ-HLEK 281


>gi|296314260|ref|ZP_06864201.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
           43768]
 gi|296839057|gb|EFH22995.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
           43768]
          Length = 261

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 96/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +   +    A    +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYI--PEAKMPSEEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   + +V    + KI         LAL   PL       + +    +VLD V 
Sbjct: 66  KLTAVLPEDRIFSVSDGILKKISSLSCADDILALIDIPLGG----TLPDKGDCVVLDSVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  +  +   S  + ++  GA   +     ++L   L + 
Sbjct: 122 DPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLRAGMGAHFLLDIYPQADLEIWLARY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E      A + G EG G+     + A     + M    ++
Sbjct: 182 EDRVFAT-ALREEKQTVLYGEDLCKPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA V L+      A
Sbjct: 241 LNVAMAATVCLFEQMRQRA 259


>gi|297195464|ref|ZP_06912862.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152803|gb|EFH31995.1| rRNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 272

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 9/240 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  +     + R   +       G   +  A          LL+ K      D    +P 
Sbjct: 18  YTGLTDVELRRRREPEEGLFIAEGEKVIRRARQTGYEMRSMLLSAKWIDVMRDVIDEVP- 76

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
             PV  V P   +++ G   VH+G     +  PL     + +  ++ ++V++ VND  NI
Sbjct: 77  -APVFAVDPALAERVTGYH-VHRGALASMQRKPLPDAA-ELLGTARRVVVMESVNDHTNI 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ +   +        K + GA+  +PY R+      L+ +   GF
Sbjct: 134 GAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDAWPKGLEAVREAGF 193

Query: 208 QTIGLSSDSK-KPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + + L+ D K   +++   +  +++AL+LGAEG GL  K    A     + M   + +LN
Sbjct: 194 RLLALTPDEKATSIDEAAPHRLERVALMLGAEGDGLSTKALMAADEWVRIPMSHGVDSLN 253


>gi|120435137|ref|YP_860823.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117577287|emb|CAL65756.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 273

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 107/266 (40%), Gaps = 7/266 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NA 77
                + +++ K +    +KSR+  +  +  + G   V+ AL      +      +  + 
Sbjct: 3   KKITSQQNKEIKWLLQLQEKSRNRRKENSFIVEGKREVNLALKGGYLPLHLYFVPELIDF 62

Query: 78  LARLDWDANLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT--LDAVRNSQL 134
              L+      H    +  +  +  DKI  + +  +GL      +  P   L       L
Sbjct: 63  QEVLEMAKANEHEAAEITEINKEVYDKIAYRGST-EGLLAVFRNIEHPVENLSFEHPFPL 121

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++V +    P NIGAILR+A A + D +I     +   +  + +S+ G+L        + 
Sbjct: 122 ILVAEAPEKPGNIGAILRTADAAAVDAVIIANPKTDLYNPNIIRSSVGSLFTNKIATGT- 180

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            ++ +Q + +        +  + KP       +  A+I+G E  GL  +  E +T    +
Sbjct: 181 TSEIIQFLQAQKIHIYAAALQASKPYSDINFKEASAIIMGTEATGLSNEWLENSTQNIII 240

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M G I ++NVS AA + ++  +   
Sbjct: 241 PMHGKIDSMNVSVAAGILIFEAKRQR 266


>gi|296158889|ref|ZP_06841717.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
 gi|295890764|gb|EFG70554.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. Ch1-1]
          Length = 261

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 101/252 (40%), Gaps = 19/252 (7%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T  AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEMCI-VTDGALR 60

Query: 80  RLDWDANLPHPFPVKTVPPQTI----DKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNS 132
             +  A       V  +    +    D + G+    VH  G+ L    L +P  D V  +
Sbjct: 61  HDEAQAI------VSRIEDHRLVTLPDALFGQLSNVVHGVGILLLVEKLDTPLPDEVAQT 114

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VLD V D  N+G+ILRSA A     +      + + S+ + +S  GA   +     
Sbjct: 115 --CLVLDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHED 172

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                 ++++ +     +   S   + +     +  +A + G EG G+    ++  +   
Sbjct: 173 VEAQALIERLAA---PIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQIWRDAVSLRV 229

Query: 253 HLHMPGIIKALN 264
            +  PG +++LN
Sbjct: 230 TIPQPGGMESLN 241


>gi|91784104|ref|YP_559310.1| putative RNA methylase [Burkholderia xenovorans LB400]
 gi|91688058|gb|ABE31258.1| Putative RNA methylase [Burkholderia xenovorans LB400]
          Length = 275

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 100/252 (39%), Gaps = 19/252 (7%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T  AL 
Sbjct: 16  KAITSRDNPLYKRLKALAGSTHQQRKSGHALLEGFHLASAYLDVAGQPEMCI-VTDGALR 74

Query: 80  RLDWDANLPHPFPVKTVPPQTI----DKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNS 132
             +  A       V  +    +    D + G+    VH  G+ L    L +P  D V  +
Sbjct: 75  HDEAQAI------VSRIEDHRLVTLPDALFGQLSNVVHGVGILLLVEKLATPLPDEVAQT 128

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VLD V D  N+G+ILRSA A     +      + + S+ + +S  GA   +     
Sbjct: 129 --CLVLDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHED 186

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                 ++++       +   S   + +     +  +A + G EG G+    ++  +   
Sbjct: 187 VEAQALIERLA---VPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQIWRDAVSLRV 243

Query: 253 HLHMPGIIKALN 264
            +  PG +++LN
Sbjct: 244 TIPQPGGMESLN 255


>gi|78358620|ref|YP_390069.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78221025|gb|ABB40374.1| RNA methyltransferase TrmH, group 3 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 253

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 95/242 (39%), Gaps = 12/242 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPP 98
                ++  L G+  V   L     ++  +   K   NA           H      V  
Sbjct: 5   KPETTDSTILPGIKPVLDQLRQSPDRVDSVTIRKGRKNADTDAIVTLCRRHGIRFTFVQD 64

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILR 152
             +DK+      HQG+           ++ V  +      +L++ LD V DP N G + R
Sbjct: 65  TALDKL--FSGNHQGVVARVFNAGYVEVEDVLEAALASPLKLVLALDQVQDPGNAGTLAR 122

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  A    GII  K  + +  +   K+++GAL  +P  R +NL+ AL+     GF     
Sbjct: 123 TLYALGGGGIIMPKHNASALGSAAVKASAGALARLPVARATNLSRALETAADQGFSIYAA 182

Query: 213 S-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D          +    L+LG E KG+RP   +  T+  H+ M     +LNV+ A A+
Sbjct: 183 RFDDGSVNAFTARLDTPAVLVLGNEDKGVRPGVAKRCTASIHIPMQREFDSLNVAQAGAM 242

Query: 272 AL 273
            +
Sbjct: 243 LM 244


>gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688]
 gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688]
          Length = 260

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 103/256 (40%), Gaps = 8/256 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K+++   + SR   +     L G H +   +         ++A   +   ++ 
Sbjct: 8   SRDNPVFKQLKKLAESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTNEVNG 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   P   V      ++        G+        +P L      + +++L+ + D
Sbjct: 68  LIQELADIPTLMVTTLMFAEL-SPVTTPTGILALV---DTPQLPLPETLEFVLMLEDIQD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G++LRSA A     +  ++  + + S    +   GA   +P +  S+L   L    
Sbjct: 124 PGNLGSMLRSAAAAGVQVVYLSEGCAEAWSPKALRGGQGAQFVLPVVERSDL---LALAG 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           ++  +T+      +  L  +     +A ++G EG GL  K Q  A+   H+ M G +++L
Sbjct: 181 NFPGETLATVMQGE-SLYAQNLRQPVAFLIGNEGAGLSLKLQAAASRKIHIPMQGQVESL 239

Query: 264 NVSNAAAVALYITQNH 279
           N + A ++ ++     
Sbjct: 240 NAAAATSICVFERLRQ 255


>gi|70726825|ref|YP_253739.1| hypothetical protein SH1824 [Staphylococcus haemolyticus JCSC1435]
 gi|68447549|dbj|BAE05133.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 246

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 17/231 (7%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
                + G+H +  A  +    I QL   +               F +       + + +
Sbjct: 27  TGQALIEGIHLIEEAYQSGI-AIKQLFVIEPNRTDEALKDYAEETFEINM----KVAESL 81

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                 QG               V+ ++ ++++D + DP N+G ++R++ A   D I+  
Sbjct: 82  SGTITPQGFFAVIEKPKYD----VKQAKQVLLIDRIQDPGNLGTLIRTSDAAGIDLIVME 137

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLEQE 223
           K  +      + +++ G++ HIP I  ++L   +      GF     G + ++ +P ++ 
Sbjct: 138 KGTADPYQDKVLRASQGSVFHIPVI-TADLKTFI-----AGFNGPVYGTALENAQPYKEV 191

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              D  AL+LG EG+G+        +    + + G  ++LNV+ A ++ LY
Sbjct: 192 ASQDIFALLLGNEGEGVNKALLNETSQNLTIPIYGKAESLNVAIAGSILLY 242


>gi|227494667|ref|ZP_03924983.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831849|gb|EEH64232.1| RNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 282

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 15/245 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVG 106
           + + G   V  AL    + +  +  ++ A  R              V  V  +    I  
Sbjct: 41  VLVEGPQAVREALRFCGKDLLDVYISEEAWERYPELVQEAKAATRWVHQVTNEVSKAIST 100

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                QG+        +  L  V +   ++VL    DP N G ++R A A   D +    
Sbjct: 101 DS---QGITAVVKDFRTDGLPKV-DWDFIVVLAQTQDPGNAGTMIRIADAAGADAVFICS 156

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--- 223
                 S  + +S++G++ H+P I    L + L+   + G Q +G   +    L      
Sbjct: 157 GSVDVTSPKVVRSSAGSVFHLPSIVNVGLPEVLEWARARGMQLLGADGNGSVDLFDAADC 216

Query: 224 ----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--Q 277
                  +  A I G E  G              + + G  ++LNVS AAAV L+ +   
Sbjct: 217 MVDVDLAEPTAWIFGNEAHGFAQFDTSEIEHFVSIPLGGHAESLNVSAAAAVCLFASAKA 276

Query: 278 NHFAK 282
             F +
Sbjct: 277 RRFNE 281


>gi|46447426|ref|YP_008791.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401067|emb|CAF24516.1| putative rRNA methylase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 265

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 95/271 (35%), Gaps = 21/271 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATK----NALA 79
            +   K++     +       +   + G       L       ++  L            
Sbjct: 2   QNPKVKQILHLRDRP-ERDISQTFLIEGY---RELLRAADADWEVNLLFICPALFLGMNE 57

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQ 133
               +        +     +   KI  ++       L  AP    TLD +        + 
Sbjct: 58  PTLIERLTSRGTELFYCSEKVFRKISYRDRPDG--LLAIAPQRHLTLDDLSLKTKKPMAP 115

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +V + +  P N+G ILRS+ A   DG+I   R +   +  + +++ G L  +P +   
Sbjct: 116 FFVVAEAIEKPGNLGTILRSSDAVGIDGLIVCDRCTDIYNPNVVRASVGTLFTVPTVEAR 175

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              D L  ++  G   +  +  ++K   Q      +A+ +G E  GL  +  + AT    
Sbjct: 176 G-EDILLWLNKQGIDILAATPHAEKEFTQVDLTSPVAIAVGTEQLGLSERWMKQATMQVR 234

Query: 254 LHMPGIIKALNVSNAAAVALYI--TQNHFAK 282
           + M G+  +LNV+ A  + LY    Q    K
Sbjct: 235 IPMMGVADSLNVAMATTLLLYEVLRQRQLKK 265


>gi|224437650|ref|ZP_03658597.1| hypothetical protein HcinC1_06720 [Helicobacter cinaedi CCUG 18818]
 gi|313144097|ref|ZP_07806290.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
 gi|313129128|gb|EFR46745.1| 23S rRNA methyltransferase [Helicobacter cinaedi CCUG 18818]
          Length = 230

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 12/229 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   +  A+      I +    K  L R  +        P+K V  +    +  + 
Sbjct: 1   MIIYGKQPILYAIETCPCSITEFYLAKE-LPRDLFSQLAKLDKPIKRVDNKKAQAL-SRG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+  +  P  + +L  ++    L+VL  ++D  NIG+I R+A A    GI+     
Sbjct: 59  GNHQGILAQIIPPQALSLKELKEKDSLLVLCEISDVGNIGSIFRTAYALGVGGIVI---C 115

Query: 169 SPSESAV----LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            PS S      + + +SGA  ++PY   + + D L ++ +  F  +G     ++ +E   
Sbjct: 116 LPSLSQKAIEGIVRLSSGAFLNMPYGVFTQVFDVLNELKNANFTLVGADMRGQERIEN-- 173

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              K AL LG+E  GL  + +    +M  + M     +LNV+ A  + +
Sbjct: 174 -PQKWALFLGSESMGLSARLKHKLDTMLSIKMKHHFDSLNVAVATGILI 221


>gi|168232176|ref|ZP_02657234.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472133|ref|ZP_03078117.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458497|gb|EDX47336.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333582|gb|EDZ20346.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 345

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPGDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|312139879|ref|YP_004007215.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311889218|emb|CBH48532.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 266

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TV 96
           +     +     + G + V+ AL      + +L  T+ A  R            V+   V
Sbjct: 19  RGAERRKTGRFLVEGENAVAEALIAGP--VHELFFTEQAAERYPHLIERAVADGVRGSLV 76

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAV 155
             + I  +        G+      L  P   AV   ++LL V   + +P N G ++R A 
Sbjct: 77  TDRAIRALSDTVTPP-GVVAVCDLLDVPLATAVTSRTRLLAVPVAIGEPGNAGTVIRVAD 135

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D  I         +    +S++G+L HIP +R  N+   L  + S G Q +  ++D
Sbjct: 136 AVGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVRERNVDAVLDALTSAGIQILATAAD 195

Query: 216 SKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  L++         A + G E  GL       A     + + G  ++LN++ AA++ L
Sbjct: 196 GEVDLDEADDLLARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICL 255

Query: 274 YITQN 278
           Y +  
Sbjct: 256 YASAR 260


>gi|291450422|ref|ZP_06589812.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291353371|gb|EFE80273.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 294

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 101/263 (38%), Gaps = 20/263 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR---KIFQLLATKNALARLDWD--A 85
           K++   N + +           G   V  AL + S     + +L  T  A  R      A
Sbjct: 37  KRLARRNVRGKERR----FLAEGPQAVREALGHRSGDEPTLVELFTTVEAAERYAEIIGA 92

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVND 143
                  V      TI +I       QGL       L    D +     +L+ VL +V D
Sbjct: 93  ARDEGARVHLADEATIAEIA-TTVTPQGLV-GVCRFLDTPFDRITAARPRLVAVLSNVRD 150

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A A   D ++ T       +    +++ G+L H+P      +  A+  + 
Sbjct: 151 PGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPVAVGVPVETAVTGLR 210

Query: 204 SWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             G + +      +  L+ E+         A I G E  GL  +T+  A ++  + + G 
Sbjct: 211 EAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEETRALADAVVRVPIHGR 270

Query: 260 IKALNVSNAAAVALY---ITQNH 279
            ++LN++ AAAV LY     Q H
Sbjct: 271 AESLNLATAAAVCLYGSARAQRH 293


>gi|41407453|ref|NP_960289.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395805|gb|AAS03672.1| TsnR [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 263

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 92/241 (38%), Gaps = 7/241 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AA       +  +  T+ A  R           PV  V  +   
Sbjct: 21  RRRAARFLAEGSNLVEAA--AGRGLVRDVFVTEAAQQRYAPLLA-ALDCPVHLVT-ERAA 76

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K +       GL        +   D +  S  L+ V   +++P N G ++R A A    G
Sbjct: 77  KALSDTVTPAGLVAVCDLPATGLRDVLAGSPRLIAVAVQISEPGNAGTLIRLADAMGAAG 136

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++         +    ++++G++  +P     +L +A+  +   G Q +  + D +  L+
Sbjct: 137 VLLAGHSVDPYNGKCLRASAGSIFSVPVAAAPDLREAVAAVREAGLQLLATTVDGEVRLD 196

Query: 222 Q--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  E+     A + G E  GL       A     + M G  ++LNV++AAA+ LY +   
Sbjct: 197 RAGELLAKPTAWLFGPESHGLPSAVAAAADHRVCIPMAGGAESLNVASAAAICLYQSARA 256

Query: 280 F 280
            
Sbjct: 257 L 257


>gi|315499963|ref|YP_004088766.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315417975|gb|ADU14615.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 264

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 98/253 (38%), Gaps = 5/253 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDW 83
           ++  K +++ + + +           G+  +  AL+        +    A  + L +   
Sbjct: 11  NQTIKDIRALHMR-KEREATRQFLAEGLKIIIDALDQGIAPQILIYGKDADHHPLLQRAI 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D  L     V  V    ++KI  KE     LA+    +   +     + ++ + L+ V D
Sbjct: 70  DETLKARGQVLEVTRDILEKISRKENPQMVLAVFAQRIRRLSEIDPDSHEVWVALEQVRD 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A A +  G+I         S    ++  G++  +P ++ +   + +    
Sbjct: 130 PGNLGTIIRTADAAAIGGVILIGDCVDPFSVETVRATMGSIFALPIVKCTR-EEFIADRG 188

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            W    +G    +K             L++G E  GL P+  +T      + M G   +L
Sbjct: 189 RWTGSVVGTLLTAKHDHRSAPYKRPTLLLMGTEQSGLTPEIADTCDLHVKIPMRGRADSL 248

Query: 264 NVSNAAAVALYIT 276
           N+S A  + +Y  
Sbjct: 249 NLSVATGIMIYAA 261


>gi|90419031|ref|ZP_01226942.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337111|gb|EAS50816.1| putative RNA methylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 297

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 99/244 (40%), Gaps = 9/244 (3%)

Query: 37  NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKT 95
           N + R     E     G   +   L +   +   LL  +N LA L +  A  P   P+  
Sbjct: 47  NVRDRDLVGREGFIAEGTVVLDQLLVSRRFRPTSLLILRNRLAGLAERLARFPGDAPIHV 106

Query: 96  VPPQTIDKIVGKEAVHQGLALE-----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                 D I G  AVH+G+          P  + T+ A     +++ +  +++  N+GAI
Sbjct: 107 ADQAVFDGIAGF-AVHRGVLAHGAERGARPSAADTIAAAGGRPIIIAV-GLSNHDNLGAI 164

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+A AF    ++              + + G    +P+ R       +    + G++ +
Sbjct: 165 FRNAAAFGAGAVLCDTTSCHPLYRKALRVSVGTALTVPWCREGTGESLVAACRAAGYRVL 224

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            LS   + PL   +   + AL LGAEG+GL P           + M   + +LNV+ +AA
Sbjct: 225 ALSPAGETPLAGLVTAGRTALCLGAEGQGLSPDLMRAV-ETVRIEMAPGLDSLNVATSAA 283

Query: 271 VALY 274
           + L+
Sbjct: 284 IVLH 287


>gi|210633174|ref|ZP_03297710.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
 gi|210159214|gb|EEA90185.1| hypothetical protein COLSTE_01623 [Collinsella stercoris DSM 13279]
          Length = 303

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 107/283 (37%), Gaps = 22/283 (7%)

Query: 19  HYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-- 75
           H A L     + Y K+     +S    +           +  A+      +  LL  +  
Sbjct: 8   HVASLDDPRLEAYTKLTERQLRSVLEPEKGIFIAESGKVIERAVEAGLEPVSFLLGERWL 67

Query: 76  NALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAP-------LLSPT 125
             +  L       HP    PV     + ++++ G       LA    P        L   
Sbjct: 68  EHMTPLFDVVAREHPGLEVPVFVGAMELLEELTGFSVTRGALAAFRRPPMPDARAFLDGL 127

Query: 126 LDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           +D        + +L+ + D  N+GAI RSA A + DGI+ +           A+ + G +
Sbjct: 128 VDRAAGRPVRVCILEGIVDHSNVGAIFRSAAALNVDGILASPTCVDPLYRRSARVSMGTV 187

Query: 185 EHIPYIRISNLTDA-----LQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAE 236
             +P+ RI           L  +H  GF    ++ SD    L+       +++A+ +G E
Sbjct: 188 FQVPWTRIGTEARTWPRDGLAVLHDAGFTCAAMALSDDSVSLDDPALQSIERLAVFMGTE 247

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G GL+PKT         + M   + +LNV+ A+AVA +    H
Sbjct: 248 GAGLQPKTIAGCDKTIRIPMAHGVDSLNVAAASAVAFWQLCPH 290


>gi|156741421|ref|YP_001431550.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
           13941]
 gi|156232749|gb|ABU57532.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
           13941]
          Length = 235

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 9/235 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPV-KTVPPQTIDKIV 105
             L GV  V+ AL + +     L A +                  PV     PQ I  + 
Sbjct: 2   FVLEGVRLVADALESGATLTLVLYAPEQLQQTPAGLDLLQRLQRLPVGYAATPQVIASVA 61

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                   +AL   P + P         L++V+D V DP N+G +LRSA A      + +
Sbjct: 62  DTVHPQGVVALARWPQIPP-----GKPGLILVIDAVQDPGNLGTLLRSAEAVGVAQTLCS 116

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                  +  + +SA GA   +   +     +  +++             ++ P      
Sbjct: 117 VGTVDVYAPKVVRSAMGAHIRLSIEQDVRWDEIGERLADVD-HVYAADPHARMPYYAADW 175

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               AL++G E  GL    +  AT    + M G  ++LNV+ AA+V L+      
Sbjct: 176 RQPSALLVGNEAHGLSEAARRLATKPITIPMCGRAESLNVAVAASVILFEALRQR 230


>gi|284033331|ref|YP_003383262.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283812624|gb|ADB34463.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 279

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 97/256 (37%), Gaps = 10/256 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANL 87
            K+ +    ++    +     + G   V  AL +    + ++ A  +   R     D   
Sbjct: 14  IKQARRLATRA-FRRKTGRFLVEGPQAVREALEH-RDSVIEVFAEPDVATRHRDLRDLAA 71

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHN 146
               P   V    ++ +  +    QG+    + +  P  +AVR  + L+ V   V DP N
Sbjct: 72  AAGVPWYEVDRAGVEAL-SETVTSQGVVAVCSLVDVPLDEAVRRTASLVAVGVQVRDPGN 130

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G ++R+A A   D ++ +       +    +++ G+L H+P     ++  A +     G
Sbjct: 131 AGTLIRTADAAGADAVVLSGESVDPHNPKAVRASVGSLFHLPIAVEVDIPAAAKSWRDQG 190

Query: 207 FQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            Q +         L++ I +         + G E  GL             + + G  ++
Sbjct: 191 VQVLAADGYGSVDLDECIDDGTLAKPTVWLFGNEAHGLPDGFDAIVDRSVKVPIYGRAES 250

Query: 263 LNVSNAAAVALYITQN 278
           LN++ AAAV LY +  
Sbjct: 251 LNLATAAAVCLYASAR 266


>gi|238789531|ref|ZP_04633315.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
           33641]
 gi|238722284|gb|EEQ13940.1| tRNA guanosine-2'-O-methyltransferase [Yersinia frederiksenii ATCC
           33641]
          Length = 230

 Score =  175 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +      +   + +   SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRL--SSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S++ DA+  + S G Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHSHIADAITHLKSQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGISQEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|111017974|ref|YP_700946.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110817504|gb|ABG92788.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 269

 Score =  175 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--V 96
           ++    +     + G ++V  AL+   R +  L  T++A  R     +  H   V+T  V
Sbjct: 19  RTAERRKVGRFLVEGENSVGEALDT--RPVHDLFYTEDAEQRYARLIDRAHTAGVRTSLV 76

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAV 155
             + +  +        GL      L  P  +A+   ++LL V   V +P N G ++R A 
Sbjct: 77  TDRAVRALSDTVTPP-GLVAVCDLLDVPLAEAIGPGTRLLAVPVAVAEPGNAGTVIRVAD 135

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D  I         +    ++++G+L H+P +R  +    L  + + G Q +  ++D
Sbjct: 136 AVGADAAILAGDSVDPHNGKCVRASAGSLFHLPVVRERDTAAVLDSISAAGIQLLATAAD 195

Query: 216 SKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  L+          A + G E  GL   T   A     + + G  ++LN++ AA++ L
Sbjct: 196 GEVDLDDADELLARPTAWLFGNEAHGLDAATSARADHRVRIPIHGRAESLNLATAASICL 255

Query: 274 YITQN 278
           Y +  
Sbjct: 256 YSSAR 260


>gi|240014154|ref|ZP_04721067.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|240121716|ref|ZP_04734678.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
          Length = 261

 Score =  175 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 97/263 (36%), Gaps = 18/263 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDW 83
           N+   + +     + +   Q     L GVH +   L +  + +   +      +   L  
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMPSEEVLKL 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-----AVRNSQLLMVL 138
            A LP    + +V    + KI           L  A  +   +D      + +     VL
Sbjct: 68  TAVLPED-GIFSVSDGILKKISS---------LSCADDILTLIDIPLGGTLPDKGDCAVL 117

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V DP N+G +LRSA A     ++  +  + + S  + ++  GA   +     ++L   
Sbjct: 118 DGVQDPGNVGTVLRSAAAARVGTVVLGRGCADAWSPKVLRAGMGAHFLLDIYSQADLEIW 177

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L       F T  L  + +  L  E   +  A + G EG G+     + A     + M  
Sbjct: 178 LAHYEDRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHD 236

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             ++LNV+ AA + L+      A
Sbjct: 237 ATESLNVAMAATICLFEQMRQRA 259


>gi|227501411|ref|ZP_03931460.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|306835564|ref|ZP_07468577.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
 gi|227077436|gb|EEI15399.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|304568564|gb|EFM44116.1| SpoU rRNA methylase [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score =  175 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 106/263 (40%), Gaps = 10/263 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           + RD +     N      S    +   G   V+A L      +  L+     L     + 
Sbjct: 5   DPRDPRLDDIRNLNKSDKSGEGLVIAEGP-LVAARLMESRFPMRCLVGFPQKLEAFFAEY 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDP 144
             P   PV  V  +T+ ++ G + +H+GL         P + + +  ++ + VL+ V D 
Sbjct: 64  GEPE-CPVYEVSRETLAEVAGFD-MHRGLVAAADRAPEPEVGEILEQARTIAVLEGVGDH 121

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR----ISNLTDALQ 200
            NIGAI R A   + D ++     +        + + G +  +P+       +    +LQ
Sbjct: 122 ENIGAIFRHAAGMNVDAVLLGSGAADPLYRRSVRVSMGHVLRVPFAHLEGGFTTWQRSLQ 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +    F  I L+ + +     E     DK+A+++GAEG GL     +     A + M  
Sbjct: 182 ALADASFTLISLTPNPQAVHLAEAMHGQDKVAMLVGAEGPGLTEHAMKATDIRARIPMAP 241

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
              +LNV+ AAA++ Y  Q   +
Sbjct: 242 GTDSLNVATAAAISFYERQRSLS 264


>gi|307700896|ref|ZP_07637921.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|307613891|gb|EFN93135.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 307

 Score =  175 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 103/266 (38%), Gaps = 18/266 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-- 86
           DY  ++  N +    ++           +   L    R    LL T + L  L       
Sbjct: 44  DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102

Query: 87  -------LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                     P PV       ++++VG       +A    P L      +  S+ ++VL+
Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFHLHRGAIASMERPALPDPAAILAQSRRVLVLE 162

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A + D I+ T   +        + + G +  +P+ R+    DA 
Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA- 221

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQE------IKNDKIALILGAEGKGLRPKTQETATSMA 252
              H+ GF+   L+  D    L             K+AL+ GAE  GL+  T   A  + 
Sbjct: 222 DLFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVV 281

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + M   + +LNV+ A AVA + T  
Sbjct: 282 RIEMAHGVDSLNVAGACAVACWATAQ 307


>gi|148272891|ref|YP_001222452.1| hypothetical protein CMM_1709 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830821|emb|CAN01762.1| unnamed protein product [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 269

 Score =  175 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 90/239 (37%), Gaps = 4/239 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     +                 +  AL         +L  +  L          
Sbjct: 16  DYSRLTDVALRRVSEPAGGLYIAESTKVMGRALAAGHVP-RSVLVQEQWLDDAAPLLEGF 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       ++++ G       LA    P L    D +R+++ ++VL+ + D  N+G
Sbjct: 75  PDVPVFVGAAAVLERLTGYNLHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+      D ++ T R +        + + G +  +P+ R+   ++A   +H  GF 
Sbjct: 135 AIFRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFH 194

Query: 209 TIGLSS-DSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              L+  D    L+       ++IAL+LG EG GL       A S   + M   + +LN
Sbjct: 195 LAALALEDDAVTLDAFAADPPERIALVLGTEGDGLSRHALRHADSTVVIPMLHGVDSLN 253


>gi|306818845|ref|ZP_07452567.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|304648531|gb|EFM45834.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 307

 Score =  175 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 103/266 (38%), Gaps = 18/266 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-- 86
           DY  ++  N +    ++           +   L    R    LL T + L  L       
Sbjct: 44  DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102

Query: 87  -------LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                     P PV       ++++VG       +A    P L      +  S+ ++VL+
Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFHLHRGAIASMERPALPDPAAILAQSRRVLVLE 162

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A + D I+ T   +        + + G +  +P+ R+    DA 
Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA- 221

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQE------IKNDKIALILGAEGKGLRPKTQETATSMA 252
              H+ GF+   L+  D    L             K+AL+ GAE  GL+  T   A  + 
Sbjct: 222 DLFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVV 281

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + M   + +LNV+ A AVA + T  
Sbjct: 282 RIEMAHGVDSLNVAGACAVACWATAQ 307


>gi|326382700|ref|ZP_08204391.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198819|gb|EGD56002.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 251

 Score =  175 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 6/244 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           ++            G ++V AAL+    +   +               L    PV  V  
Sbjct: 6   RASVRRSEGRFLAEGFNSVDAALSTGRAEQVLVRDDDADRHADLIGRALDAGIPVHRVTA 65

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +  DK+                LL+  L AV   + +LL++     +P N+G + R A A
Sbjct: 66  RAADKLSETSTAPG--VFAVCQLLTVGLAAVLGDDPRLLVIAVEPREPGNLGTLTRCADA 123

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              D +I         +    ++++G++ HIP +R  ++   L  +   G  T+  + D 
Sbjct: 124 MGADAVILLGDSVDPHNGKSVRASAGSVFHIPVVRTVDVAGGLAAVADAGIVTLATTMDG 183

Query: 217 KKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  L+          A + G E  GL  +  + A     + + G  ++LN++ A+AV LY
Sbjct: 184 ELSLDDADDVLARPHAWLFGNEAHGLPQQVLDGADRSVRIPLRGRAESLNLAAASAVCLY 243

Query: 275 ITQN 278
            +  
Sbjct: 244 ASAR 247


>gi|55980244|ref|YP_143541.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
 gi|55771657|dbj|BAD70098.1| RNA 2'-O ribose methyltransferase [Thermus thermophilus HB8]
          Length = 260

 Score =  175 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 103/256 (40%), Gaps = 7/256 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K + +  ++ +   +     + G   V  AL      +  LL    A      D 
Sbjct: 7   QNPRVKALAALKER-KERERTGRFLVEGRREVERALE-AGLSLETLLLGPKARP---EDR 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            L     V  +  + + ++  +E   Q L +   P  S     +  + L++VL  +  P 
Sbjct: 62  ALAGGAEVLELSERALARVSTRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILR+A     D ++  +      S  + ++++GA+  +P   ++   +A + +   
Sbjct: 122 NLGAILRAADGAGADLVLVAEG-VDLFSPQVIRNSTGAVFALPVYPVAE-GEAARFLEEH 179

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +  + + ++   +      +A +LGAE KGL    +  A     + M G   +LNV
Sbjct: 180 NLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNV 239

Query: 266 SNAAAVALYITQNHFA 281
           +  AA+ LY      +
Sbjct: 240 AVTAALLLYEALRQRS 255


>gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 259

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 104/260 (40%), Gaps = 11/260 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K +      +++  Q     L G H + A L + ++   Q+   ++ L   +  +
Sbjct: 8   HNTQLKHLAKLGVSAKYRRQYRQTVLEGAHLLDALLQSGAQP-QQVFIAQSRLHTPETQS 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAV---HQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L       T   +  D+++ K +      G+         P   A   +   +VL+ + 
Sbjct: 67  LLARLPSENTAAVE--DRLLAKASALSDGGGILSLV---EIPETAAPPQNGDCVVLERIQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP NIG ILRSA A     II  +  +   S  + ++A GA   +     SNL    Q  
Sbjct: 122 DPGNIGTILRSAAAAGVRQIIAGEGCADLWSPKVLRAAMGAHFLLRLHPASNLAVWRQTY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T   +  +  PL +       A + G EG GL    + TAT    + M G  ++
Sbjct: 182 REPLFATALTA--NSTPLYRLNLRPPCAWLFGNEGGGLTAAARNTATRTVKIPMSGATES 239

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ AA V L+      ++
Sbjct: 240 LNVAMAATVCLFEQLRQRSE 259


>gi|300858020|ref|YP_003783003.1| hypothetical protein cpfrc_00602 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685474|gb|ADK28396.1| hypothetical protein cpfrc_00602 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205744|gb|ADL10086.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
           C231]
 gi|302330299|gb|ADL20493.1| Putative methyltransferase [Corynebacterium pseudotuberculosis
           1002]
 gi|308275979|gb|ADO25878.1| Putative methyltransferase [Corynebacterium pseudotuberculosis I19]
          Length = 290

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 111/282 (39%), Gaps = 21/282 (7%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  + D+   +L     D++ +   + +         +   G   V   L +    +  L
Sbjct: 12  IVHIADAEDTRLD----DFRDLNHSDNRPDLPGGKGLVIAEGPLVVGRLLQS-RFPVRCL 66

Query: 72  LATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD- 127
           +     L     D   A L    PV ++  +T+  + G + +H+GL      +   +++ 
Sbjct: 67  IGFPAKLESFLSDPAMAELVRDIPVYSLDRETLASVAGFD-MHRGLLAAADRVAGLSIEE 125

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           AV  ++ + +L+ V D  NIG++ R+A     D I+     +      + + + G +   
Sbjct: 126 AVSTARTVAILEGVGDHENIGSMFRNAAGMGVDAILFGNGCADPLYRRVVRVSMGHVLRT 185

Query: 188 PYIRI----SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-------NDKIALILGAE 236
           P+       +     L+ + + GF  + L+   +     +          DK+AL++GAE
Sbjct: 186 PFAHFGGKRTTWQRELEGLKAAGFHLVSLTPHPEAVHLADALVDATGQPYDKVALLVGAE 245

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G GL           A + M     +LN++ +AA+A Y    
Sbjct: 246 GPGLTEHAMRATDVRARIPMAPGTDSLNLATSAAIAFYERDR 287


>gi|145230059|ref|XP_001389338.1| RNA methyltransferase, TrmH family [Aspergillus niger CBS 513.88]
 gi|134055453|emb|CAK43968.1| unnamed protein product [Aspergillus niger]
          Length = 497

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 112/301 (37%), Gaps = 72/301 (23%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV-KTVPPQ--- 99
           + P + F+YG+    AAL    R+I++L   ++    L  +        + K V  +   
Sbjct: 179 TTPASQFVYGISACMAALRCSRRRIYKLYIYQSEGRELSPEKKALRKLALLKNVTVKMAF 238

Query: 100 -----TIDKIVGKEAVHQGLALETAPLLSPTLDAVR------------------------ 130
                 +D++      HQG  LE +PL    +   R                        
Sbjct: 239 ASWGRLLDQM-SDGRPHQGCILEVSPLPRLPVQNFRPVPSPEADNFGLELGAQSREEAQV 297

Query: 131 ---------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                             ++++LD + DP N+GAI+RSA     D I+   R S   S V
Sbjct: 298 NTTNNTVDINNTFGKRYPVVILLDGIVDPGNLGAIIRSAYYLGADAIVFAGRNSAEISPV 357

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--------- 226
           + K+++GA E +  + + N  D +++    G++     +  K      I           
Sbjct: 358 VLKASAGAAELMTLLHVRNEVDFIRRSKDNGWRFYAADAPGKGSTSTYIDPAEFGNGAPV 417

Query: 227 --DKIALILGAEGKGLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAVA 272
                 +++G+EG GL P     A ++  +              P  + +LNVS AAA+ 
Sbjct: 418 AQAPSVIMMGSEGTGLSPHILSQADAVIGIPGAKFSPELGAESDPARVDSLNVSVAAALL 477

Query: 273 L 273
           +
Sbjct: 478 M 478


>gi|190407514|gb|EDV10781.1| ribose methyltransferase for mitochondrial 21S rRNA [Saccharomyces
           cerevisiae RM11-1a]
          Length = 385

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 119/334 (35%), Gaps = 76/334 (22%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-------------QPENLFLYGVHTV 57
             +  K +H  KL    ++ K     NQKS  +               P   ++YG ++V
Sbjct: 50  DPYGKKKAHVEKL----KEIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSV 105

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            AAL NPSR     L     +               + V    ++ +     VH  +ALE
Sbjct: 106 YAALLNPSRNCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNY-GVHNNIALE 164

Query: 118 TAPLLSPTLDAV----------------------------------RNSQLLMVLDHVND 143
           T PL    +  +                                  +   L + LD + D
Sbjct: 165 TKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITD 224

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +    +   K  
Sbjct: 225 PHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQ 284

Query: 204 SWGFQTI-------GLSSDS--KKPLEQEIKND-----KIALILGAEGKGLRPKTQETAT 249
             G  T          S      K +     N       + L++G E +G+R   +  + 
Sbjct: 285 EMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSD 344

Query: 250 SMAHLHMPG----------IIKALNVSNAAAVAL 273
               +   G          I+ +LNVS A A+ +
Sbjct: 345 FFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 378


>gi|194445716|ref|YP_002041915.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404379|gb|ACF64601.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 345

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +KI L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKIVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|151945292|gb|EDN63535.1| mitochondrial rRNA methyltransferase [Saccharomyces cerevisiae
           YJM789]
 gi|207341047|gb|EDZ69213.1| YOR201Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269588|gb|EEU04870.1| Mrm1p [Saccharomyces cerevisiae JAY291]
 gi|323331535|gb|EGA72950.1| Mrm1p [Saccharomyces cerevisiae AWRI796]
 gi|323352137|gb|EGA84674.1| Mrm1p [Saccharomyces cerevisiae VL3]
          Length = 412

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 119/334 (35%), Gaps = 76/334 (22%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-------------QPENLFLYGVHTV 57
             +  K +H  KL    ++ K     NQKS  +               P   ++YG ++V
Sbjct: 77  DPYGKKKAHVEKL----KEIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSV 132

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            AAL NPSR     L     +               + V    ++ +     VH  +ALE
Sbjct: 133 YAALLNPSRNCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNY-GVHNNIALE 191

Query: 118 TAPLLSPTLDAV----------------------------------RNSQLLMVLDHVND 143
           T PL    +  +                                  +   L + LD + D
Sbjct: 192 TKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITD 251

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +    +   K  
Sbjct: 252 PHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQ 311

Query: 204 SWGFQTI-------GLSSDS--KKPLEQEIKND-----KIALILGAEGKGLRPKTQETAT 249
             G  T          S      K +     N       + L++G E +G+R   +  + 
Sbjct: 312 EMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSD 371

Query: 250 SMAHLHMPG----------IIKALNVSNAAAVAL 273
               +   G          I+ +LNVS A A+ +
Sbjct: 372 FFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|300790280|ref|YP_003770571.1| tRNA/rRNA methyltransferase [Amycolatopsis mediterranei U32]
 gi|299799794|gb|ADJ50169.1| putative tRNA/rRNA methyltransferase [Amycolatopsis mediterranei
           U32]
          Length = 268

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 102/253 (40%), Gaps = 5/253 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   G   VS  L +    +  LL  +   A L  D    
Sbjct: 16  DFRHLSTADRRPDRPGGRGFVIAEGTVVVSRLLASRY-PVRALLGVQRRFAELAGDLA-G 73

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      +T+ ++VG       LA+   P      + V  +  + VL+ V D  N+G
Sbjct: 74  LDVPQYVASAETMAEVVGFHLNRGILAVADRPAPLTVSEVVGGTGPIAVLEGVGDHENLG 133

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A A    G++     S        + + G +  +P+  +++    L  + + GF 
Sbjct: 134 SLFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVPFGHLTDWPGGLDDLRARGFA 193

Query: 209 TIGLSSD-SKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +      PL   +E    ++AL+ GAEG GL       A     + MP  + +LN+
Sbjct: 194 VAAFTPRPGSIPLAALREHAPGRVALLFGAEGPGLTETALAAADHAVRIPMPAGVDSLNI 253

Query: 266 SNAAAVALYITQN 278
           + AAAVA Y    
Sbjct: 254 ATAAAVAFYELAR 266


>gi|183221112|ref|YP_001839108.1| TrmH family tRNA/rRNA methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167779534|gb|ABZ97832.1| Putative tRNA/rRNA methyltransferase, trmH family [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 233

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 105/223 (47%), Gaps = 12/223 (5%)

Query: 62  NNPSRKIFQLLATKNA--LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-LALET 118
               + I +++         +    A LP+     TV  + +D+I  ++  HQG + + T
Sbjct: 4   ERGIKTIREVIVKDGIGNEEKQRIKAYLPNSVKFTTVSARELDRIA-QDKNHQGYVIIRT 62

Query: 119 APLLSPTL-------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                 +L       +   N   +++LD + DP N+G +LR+A       ++ + R +  
Sbjct: 63  KQKSYLSLGFEQFKQNIKPNEGPVLILDRIQDPGNLGNLLRTAECMGVKHVLMSDRDTSP 122

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIA 230
            + V+ K ++GA+ HI   R++NL   +  +    +  +    + ++ + + + +  ++A
Sbjct: 123 ITPVVEKVSAGAIHHIQIYRVANLKHGIDFLKKNEYWILATDEEGEEGIWETLPDVSQMA 182

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +I+G EG+G++    E A  +A + + G + +LNV  A  + L
Sbjct: 183 VIMGNEGEGVKRILLEDADYVARIPLYGAVTSLNVVVACGITL 225


>gi|78048990|ref|YP_365165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037420|emb|CAJ25165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 390

 Score =  175 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 96/234 (41%), Gaps = 8/234 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDK 103
              + LYG++ V A      + + +L  ++  + +        +      + V    + K
Sbjct: 145 AREVRLYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSK 204

Query: 104 IVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    A H+G+  E       PL        +   L + LD V +PHN GAILRS+  F 
Sbjct: 205 LAAS-AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFG 263

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++     +   S   A+ A G  E +P +++ +   A+ ++   GF       D  +
Sbjct: 264 VAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQ 323

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +       ++  ++GAE +G+             +   G +++LNV++A AV 
Sbjct: 324 DVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 377


>gi|256391520|ref|YP_003113084.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256357746|gb|ACU71243.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 269

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 7/241 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     +             G   +  AL         LL+ K A A       + 
Sbjct: 17  DYSGLTDVELRKVREPAEGLFLAEGEKVIRRALAAGYPMRSTLLSPKWAQAMRPLIEEV- 75

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNI 147
              PV       ++ + G   VH+G              A +  ++ ++V++ + +  N+
Sbjct: 76  -DAPVYVGSEALLEAVTGFH-VHRGALASMQRTPVSEAGAVLAAAKRVVVMEDIVNHTNL 133

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D  + T   +        + + G +  +PY R+ +    L  +   GF
Sbjct: 134 GAIFRSAAALGMDAAVLTPSCADPLYRRSVRVSMGTVFALPYARLDSWPGGLTTLAEHGF 193

Query: 208 QTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +TI L+        +++     DK+AL+LG EG GL       A     + M   + +LN
Sbjct: 194 RTIALTPGPTAIDLRDLRFGPEDKVALLLGTEGDGLSDPALAAADMRVRIPMTAGVDSLN 253

Query: 265 V 265
           V
Sbjct: 254 V 254


>gi|145510039|ref|XP_001440955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408189|emb|CAK73558.1| unnamed protein product [Paramecium tetraurelia]
          Length = 261

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 23/252 (9%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----ARLDWDANLPHPFP-- 92
           SR +SQ    +LYG++ V +AL    R   QL   +         R+    N        
Sbjct: 8   SRFSSQKSYDYLYGINPVMSALYANKRSFTQLYVNQTQQNDYINPRVSNILNRAQSLKLD 67

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V+ +P   +++    +  HQ + L+ + L     + + +    ++LD V DP N GAILR
Sbjct: 68  VQMIPKNKLERYCSND-HHQNVILKCSKLNY--CNQLPDESNFVLLDSVQDPQNFGAILR 124

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
                  + +I  K+     S  ++K+++GALE +      NL + +++     FQ IG 
Sbjct: 125 VCFFLGINTVIVEKKGQCPLSPTVSKTSAGALELMNIFETDNLANFVKQ-RKHEFQVIGS 183

Query: 213 SSDS-KKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGI-------IK 261
             +S   P+++  K+    K  +I G+E  G+R +  +   ++ ++ M          + 
Sbjct: 184 GFESNSIPIDEFQKDQNKPKKIIIFGSESSGIRTELFKQCDTIVNI-MTSRHTFPETLVD 242

Query: 262 ALNVSNAAAVAL 273
           +LNVS +A + L
Sbjct: 243 SLNVSVSAGIIL 254


>gi|256826939|ref|YP_003150898.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
 gi|256583082|gb|ACU94216.1| rRNA methylase [Cryptobacterium curtum DSM 15641]
          Length = 303

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 21/269 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           D  ++  + + S    +   LF+      ++ AL+     +  L   +  LA+     + 
Sbjct: 34  DDSRLDPYRRTSDMLLRERGLFIAESDKVINRALDAGVH-LRSLFLEEKWLAKTRPVLDR 92

Query: 88  ------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
                     PV  V  +    + G E     LA+    +L      ++N++ + +L+ +
Sbjct: 93  LGHEHTAKAIPVFIVTHEQFRAVTGYEVTRGALAVFERLVLPRPEALLKNARRVAILEDI 152

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--------- 192
            +  NIGA  RSA A S D ++ T           A+ + G +  +P+ RI         
Sbjct: 153 VNYTNIGAAFRSAAALSIDAVLLTPSCHDPLYRRAARVSMGTVFQVPWTRIGAKAHSGST 212

Query: 193 -SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKN--DKIALILGAEGKGLRPKTQETA 248
              +   +  +H +GF+T+ L+ D    PL        +++AL+LG EG GL  +T+   
Sbjct: 213 GDWVESGIDLLHRFGFKTVALALDDDALPLNDARFAACERLALVLGTEGDGLAEQTRMLC 272

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             MA + M   I +LNV+ A+AVA + T+
Sbjct: 273 DWMARIPMAPGIDSLNVAAASAVAFWETR 301


>gi|320031639|gb|EFW13599.1| SpoU rRNA methylase [Coccidioides posadasii str. Silveira]
          Length = 472

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 113/284 (39%), Gaps = 62/284 (21%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATK-----------NALARLDWDANLPHPFP---- 92
           + F+YG H V +A+    RKI+ L   +           N+L +L   A           
Sbjct: 138 SEFIYGFHPVRSAIRAGRRKIYALYLCERPTNQLSGSGLNSLQKLAVTAGAKVKIVSSEW 197

Query: 93  --------------------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
                               VK  P    +  V   +   GL   T+ L   + D  R  
Sbjct: 198 SQALSRVCKEVASLPVTNFNVKVAPQSKEEAAVNGTS---GLIPLTS-LRQDSYDDHRTQ 253

Query: 133 -----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                   ++LD + DPHN+GAILRSA  F  D +  + R S   S V+ KS+SGA EHI
Sbjct: 254 HNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHI 313

Query: 188 PYIRISNLTDALQKMHSWGFQTIGL------SSDSK-------KPLEQEIKNDKIALILG 234
           P I I +    +      G++          + DSK       K L  E++N    L+LG
Sbjct: 314 PLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIVSSKNLPNELQNYPCVLMLG 373

Query: 235 AEGKGLRPKTQETATSMAHL-----HMPGIIKALNVSNAAAVAL 273
            EG GL  + +  A +   +     H+   + +LNV+ A+ +  
Sbjct: 374 NEGDGLSKELKSKADASVVVDCPRKHIVDEVDSLNVAVASGILC 417


>gi|294667071|ref|ZP_06732297.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603163|gb|EFF46588.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 305

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 94/234 (40%), Gaps = 8/234 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDK 103
              + LYG++ V A        + +L  ++  + +        +      + V    + K
Sbjct: 60  AREVRLYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVDEADLSK 119

Query: 104 IVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    A H+G+  E       PL        +   L + L  V +PHN GAILRS+  F 
Sbjct: 120 LAAS-AHHEGVVAEVLRVTPQPLQEWLAALPQGPVLALWLCGVGNPHNFGAILRSSAHFG 178

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++     +   S   A+ A G  E +P +++ +   AL ++   GF       D  +
Sbjct: 179 VAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQ 238

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +       ++  ++GAE +G+             +   G +++LNV++A AV 
Sbjct: 239 DVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 292


>gi|326525807|dbj|BAJ88950.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 333

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 108/274 (39%), Gaps = 27/274 (9%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K+       + +      L L G+  +       S  I  LL    A   +  +  
Sbjct: 59  NPLVKRCVRLRDSAAYRRSCRRLVLVGLAPILEICRLGSVAIDCLLLLDGA--EVPDELR 116

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTL----------DAVRNSQL 134
                 V  V    + KI G ++V   + +A+   P     L           + ++ + 
Sbjct: 117 ELSGGSVVHVSATVMKKISGMQSVDSTEAIAVMHMPRHFCDLGDDEGGAGLDASFQSPKR 176

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +   N
Sbjct: 177 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKALRAARGASLQLPIVS-GN 235

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRPK 243
             D    +  +G +      +S              L   + ++ + L+LG+EG GL  +
Sbjct: 236 WCDLHALVTRYGMKMFAGHPESSSDGSARTHALSKELADSLVSESLCLVLGSEGNGLSEE 295

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           T +    +  + M GI ++LNVS A  + L++ Q
Sbjct: 296 TVQACD-LVSIPMEGIFESLNVSVAGGIFLFMLQ 328


>gi|50290571|ref|XP_447717.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527027|emb|CAG60662.1| unnamed protein product [Candida glabrata]
          Length = 384

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 134/330 (40%), Gaps = 62/330 (18%)

Query: 5   SKKKSEKIFSL--KDSHYAKLR---RNHRDYKKMQSFNQK------SRHTSQPENLFLYG 53
            +KK +K  SL  +++H  +L     ++RD K       K      ++    P + +LYG
Sbjct: 52  DQKKRQKAGSLGKREAHEQRLDGICHSYRDNKNAHRQKFKNLYTNVTKFAINPLSEYLYG 111

Query: 54  VHTVSAALNNPSRKIFQLLA-----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           V+ + AAL +  R  F  L       K++               + T     ++ ++ K 
Sbjct: 112 VNPILAALESDRRGYFTRLLHHDTNDKDSNKLTILRLCKEKGIKIDTADKHQLN-LITKS 170

Query: 109 AVHQGLALETAPLLSPTLDAV--------------------------------RNSQLLM 136
           AVH  + LE  PL  P ++++                                +   + +
Sbjct: 171 AVHNNMVLECKPLSIPEINSLQNVNIDTASFNVLQTDGITQWSKSEKFHNNERKKYPVGI 230

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            LD V DPHN+GAI+RSA     D +  +++   +   V+AK++SGA++++P   +    
Sbjct: 231 YLDEVTDPHNMGAIIRSAFFLGADFVALSRKNCAAIGPVVAKTSSGAVDYLPMFYVDKPL 290

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKND---------KIALILGAEGKGLRPKTQE 246
              +   + G+  +  S   SKK + + +             I L++G E  G+R   ++
Sbjct: 291 KFFELSQAEGWTVVSSSHGHSKKDVAKTLDLGDLHNMSHSMPILLVMGNEYSGIRTNLKQ 350

Query: 247 TATSMAHLHMP---GIIKALNVSNAAAVAL 273
            +  +  +        + +LNVS A  + L
Sbjct: 351 RSDFLVAIPQMTNNSTVDSLNVSVATGILL 380


>gi|254443559|ref|ZP_05057035.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198257867|gb|EDY82175.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 258

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 12/244 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKT 95
            +   +     + G H V  A+ +  R +  ++    A      DA L         V  
Sbjct: 8   KKTRVEEGRFLIEGWHLVDEAVKSG-RALHAVVFDPEAKREAAEDALLKRVSRMAEEVFE 66

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-----SQLLMVLDHVNDPHNIGAI 150
                +  +    +  QG+    + +     + ++         L++LD V DP N G++
Sbjct: 67  ASGSQLSALSDTRSS-QGVVALVSRVGMDFSELLKGLPEAGPARLLLLDEVGDPGNCGSM 125

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A  F  DG++  K  +  E+   +++  G L ++P     +L  A+ ++   G Q  
Sbjct: 126 VRAADWFGLDGVVFGKGCAELENGKTSRATMGGLFYLPVAVGVDLAAAVSELRRSGVQVF 185

Query: 211 GLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
               D S   L      ++ AL++G E +G+     E A     +   G  ++LN + AA
Sbjct: 186 TTELDESAVSLRDFEFPERCALVIGNEARGVSAAISELADGKLFVERFGSGESLNAAVAA 245

Query: 270 AVAL 273
           AV L
Sbjct: 246 AVFL 249


>gi|283769025|ref|ZP_06341931.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
 gi|283104382|gb|EFC05759.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
          Length = 237

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/236 (22%), Positives = 97/236 (41%), Gaps = 6/236 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHP--FPVKTVPPQTIDKIV 105
           + + G  +V AAL    R +  L        R L++     H    PV  +  + I+ + 
Sbjct: 1   MIIEGATSVKAALEAKKRVVNALYVDDKKKDRNLNYILFKAHEAHVPVYRLKREEINTLA 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                H GL  +    +   L+  R S  L+VL+ V DP N G ++R+A +   DGI+  
Sbjct: 61  -FGKTHGGLLADVEERIMDHLEISR-SSFLLVLEGVVDPFNFGYMVRTAYSAGVDGILIP 118

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           + +     +V+ KS++GA +H   I   +L   L+ +   GF       D+    ++   
Sbjct: 119 EYHWHDLESVILKSSAGAFDHCSIIPSKDLAQDLRLLKEKGFTIYAGYRDNAIVYDEADY 178

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVALYITQNHF 280
            +     +G E +GL  +  E      ++      K  LN ++A +V  +      
Sbjct: 179 TNPTVFCVGGELRGLSKQVLEQVDQAVYIPYANGFKNALNAASACSVFCFEVLRQR 234


>gi|323335423|gb|EGA76709.1| Mrm1p [Saccharomyces cerevisiae Vin13]
 gi|323346586|gb|EGA80873.1| Mrm1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 412

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 120/334 (35%), Gaps = 76/334 (22%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-------------QPENLFLYGVHTV 57
             +  K +H  KL    ++ K     NQKS  +               P   ++YG ++V
Sbjct: 77  DPYGKKKAHVEKL----KEIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSV 132

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            AAL NPSR     L     +               + V    ++ +     VH  +ALE
Sbjct: 133 YAALLNPSRNCHSRLLYHGTIPSKILQIVDEMKVTTELVDKHRLNLLTNY-GVHNNIALE 191

Query: 118 TAPLLSPTLDAV----------------------------------RNSQLLMVLDHVND 143
           T PL    +  +                                  +   L + LD + D
Sbjct: 192 TKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITD 251

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +    +   K  
Sbjct: 252 PHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQ 311

Query: 204 SWGFQTIGLSSDS---------KKPLEQEIKND-----KIALILGAEGKGLRPKTQETAT 249
             G  T   S  +          K +     N       + L++G E +G+R   +  + 
Sbjct: 312 EMGGWTFITSHLANXTSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSD 371

Query: 250 SMAHLHMPG----------IIKALNVSNAAAVAL 273
               +   G          I+ +LNVS A A+ +
Sbjct: 372 FFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|170782313|ref|YP_001710646.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156882|emb|CAQ02050.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 284

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 4/239 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     +                 +  AL         +L  +  L  +       
Sbjct: 31  DYSRLTDVALRRVSEPAGGLYIAESTKVMGRALAAGHVP-RSVLVQEQWLDDVAPLLEGF 89

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV       ++++ G       LA    P L    D +R+++ ++VL+ + D  N+G
Sbjct: 90  PDVPVFVGAAAVLERLTGYNLHRGALAAMHRPPLPAVADVLRDARRVVVLEDIVDHTNVG 149

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AI R+      D ++ T R +        + + G +  +P+ R+   ++A   +H  GF 
Sbjct: 150 AIFRAVAGIGADAVLITPRCADPLYRRSVRVSMGTVLQVPWTRLPEWSEAAPLLHEAGFH 209

Query: 209 TIGLSS-DSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              L+  D    L+       ++IAL+LG EG GL       A S   + M   + +LN
Sbjct: 210 LAALALEDDAVTLDAFAADAPERIALVLGTEGDGLSRHALRHADSTVVIPMLHGVDSLN 268


>gi|224584503|ref|YP_002638301.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224469030|gb|ACN46860.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|323130986|gb|ADX18416.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326628796|gb|EGE35139.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 349

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 165 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 224 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 283 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 342

Query: 274 YITQN 278
           +  QN
Sbjct: 343 WWRQN 347


>gi|298571690|gb|ADI87842.1| hypothetical protein AKSOIL_0334 [uncultured bacterium Ak20-3]
          Length = 272

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 105/261 (40%), Gaps = 11/261 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   KK+ +  ++ +   +     + G      A+     ++ +L    + L+    + 
Sbjct: 11  QNPQIKKVSNLRER-KWRKKYGEFLVEGTREQEKAIAFG-FQVLELYFCPSFLSDKGEEI 68

Query: 86  ---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHV 141
                     +  +     +KIV ++++  G+ L   P L    D  V+ +  L++++ V
Sbjct: 69  LNSIKDPKVSIYELTEPCFNKIVVRQSLD-GIVLVMKPKLKALEDFPVKQNPFLLLIESV 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P N+GA+LR+A     DG++  +      +  + +S+ G    +P    S   +A   
Sbjct: 128 EKPGNLGALLRTADGSGVDGVLVLESQIDLYNPNVIRSSLGCCFSLPIAMCSR-EEAYAF 186

Query: 202 MHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                      + S++    +        A++LG+E KGL P     A  +  + M G  
Sbjct: 187 CKERKIAIHAAVLSNASVYYDTVNYPSSTAILLGSEDKGLDPYWVSHANHLISIPMHGEA 246

Query: 261 KALNVSNAAAVALYI--TQNH 279
            +LNVS A AV LY    + H
Sbjct: 247 DSLNVSAAGAVLLYEVSRRRH 267


>gi|239978526|ref|ZP_04701050.1| rRNA methylase [Streptomyces albus J1074]
          Length = 275

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 100/263 (38%), Gaps = 20/263 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR---KIFQLLATKNALARLDWDANL 87
           K++   N + +           G   V  AL + S     + +L  T  A  R       
Sbjct: 18  KRLARRNVRGKERR----FLAEGPQAVREALGHRSGDEPTLVELFTTVEAAERYAEIIGA 73

Query: 88  PH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVND 143
                  V      TI +I       QGL       L    D +     +L+ VL +V D
Sbjct: 74  ARDEGARVHLADEATIAEIA-TTVTPQGLV-GVCRFLDTPFDRITAARPRLVAVLSNVRD 131

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A A   D ++ T       +    +++ G+L H+P      +  A+  + 
Sbjct: 132 PGNAGTVLRCADAAGADAVVLTDASVDVYNPKAVRASVGSLFHLPVAVGVPVETAVTGLR 191

Query: 204 SWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             G + +      +  L+ E+         A I G E  GL  +T+  A ++  + + G 
Sbjct: 192 EAGVRILAADGAGEDDLDTELDRGTMGGPTAWIFGNEAWGLPEETRALADAVVRVPIHGR 251

Query: 260 IKALNVSNAAAVALY---ITQNH 279
            ++LN++ AAAV LY     Q H
Sbjct: 252 AESLNLATAAAVCLYGSARAQRH 274


>gi|255724784|ref|XP_002547321.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
 gi|240135212|gb|EER34766.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
          Length = 434

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 121/360 (33%), Gaps = 98/360 (27%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN---------------------------- 48
           D   A+ RR HR+ +       + +   + EN                            
Sbjct: 79  DEKVARQRR-HREMRIAHEKALRDKEREERENARQMARMSKKSSPSSGSAGLLERNDTFF 137

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            +++G H V AAL    R++ +L    N    +   A        + V  +    ++ K 
Sbjct: 138 DYIFGTHAVKAALTAGKRRVLELYTYNNVDPEITKLAENKFGILPRMVRDKHALNVLCKN 197

Query: 109 AVHQGLALETAPLLSPTLDAVRNS------------------------------------ 132
            VH G+ L+T  L  P L  +  +                                    
Sbjct: 198 GVHNGVVLKTRKLDVPYLKELGRAEDGKYTLTIENSEDGTISEESKSVLRDAKKDETEEL 257

Query: 133 -QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L++ LD V DP N+G++LRSA  F  DG+I     +     +  K+++GAL+ I   +
Sbjct: 258 YPLMLYLDEVTDPQNMGSVLRSAFFFGIDGVILPDHSTAKLGPIAFKASAGALDLIDLYQ 317

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------------------ 227
             +    +  +   G+  I  S    +    E+ +                         
Sbjct: 318 TESSLKFIDSVRKNGWHVISTSGKPDEVSNDELADKHPKTISQLASKFIDLEDLQIILRK 377

Query: 228 -KIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVALYITQNHFAK 282
             + L++G+EG+G+R   +  +  +  +         + +LNV  A  V L   QN   K
Sbjct: 378 SPVMLVIGSEGEGVRTNVKLRSDYLVGIPKYRSDDVIVDSLNVGVATGVIL---QNCIGK 434


>gi|193211994|ref|YP_001997947.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
 gi|193085471|gb|ACF10747.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
          Length = 256

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 102/249 (40%), Gaps = 14/249 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--KIFQLLATKNALARLDWDANLPH 89
           ++   ++K ++          G+ TVS  L++      +  L+  + A  +LD       
Sbjct: 4   RLAKLSRK-KYRDSEGLFLAEGLRTVSELLDSLPDLSMLHALVLDEAAAGQLDGLKRFAG 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNI 147
                 +      K + + A  QG+         P +   R      ++ LD V DP N+
Sbjct: 63  KV---WLGDADAFKRLAQTASPQGVCAA---FRKPEMGEFRPAERSFVVALDDVQDPGNV 116

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R+A  F  + +I     +   +A   +S +G++  +  I + +L   L+++ + GF
Sbjct: 117 GTIIRTAAWFGAEAVICGPGTADPWNAKTVRSTAGSIFALRIIDVPDLAAELKRLQAAGF 176

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALN 264
                + D +         D+ AL++G E  G+  K    A S   +   G    +++LN
Sbjct: 177 TVAAAALDGQDYRSFGEWPDRRALVIGNEANGISEKVLALADSRLLIPHAGTHPAVESLN 236

Query: 265 VSNAAAVAL 273
            S +A + +
Sbjct: 237 ASVSAGILM 245


>gi|168468062|ref|ZP_02701899.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195628860|gb|EDX48274.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 345

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|16761506|ref|NP_457123.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765968|ref|NP_461583.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140797|ref|NP_804139.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|62181223|ref|YP_217640.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161612632|ref|YP_001586597.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167553664|ref|ZP_02347411.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994861|ref|ZP_02575951.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168245088|ref|ZP_02670020.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168823163|ref|ZP_02835163.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194448811|ref|YP_002046657.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197247519|ref|YP_002147552.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|198243831|ref|YP_002216663.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200387404|ref|ZP_03214016.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205353691|ref|YP_002227492.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207858002|ref|YP_002244653.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213161475|ref|ZP_03347185.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213646341|ref|ZP_03376394.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289812223|ref|ZP_06542852.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289825485|ref|ZP_06544692.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25325047|pir||AI0830 probable RNA methyltransferase STY2841 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421198|gb|AAL21542.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16503807|emb|CAD05832.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136422|gb|AAO67988.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128856|gb|AAX66559.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161361996|gb|ABX65764.1| hypothetical protein SPAB_00327 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407115|gb|ACF67334.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197211222|gb|ACH48619.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197938347|gb|ACH75680.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604502|gb|EDZ03047.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205273472|emb|CAR38449.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205321946|gb|EDZ09785.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327360|gb|EDZ14124.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205336134|gb|EDZ22898.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340551|gb|EDZ27315.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206709805|emb|CAR34157.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247846|emb|CBG25675.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994789|gb|ACY89674.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159199|emb|CBW18714.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913642|dbj|BAJ37616.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085531|emb|CBY95310.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321226003|gb|EFX51056.1| hypothetical tRNA/rRNA methyltransferase yfiF [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322715711|gb|EFZ07282.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|326624419|gb|EGE30764.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332989577|gb|AEF08560.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 345

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|227875536|ref|ZP_03993676.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227843872|gb|EEJ54041.1| rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 307

 Score =  175 bits (444), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 62/266 (23%), Positives = 104/266 (39%), Gaps = 18/266 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-- 86
           DY  ++  N +    ++           +   L    R    LL T + L  L       
Sbjct: 44  DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102

Query: 87  -------LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                     P PV       ++++VG +     +A    P L      +  S+ ++VL+
Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFQLHRGAIASMERPALPDPAAILAQSRRVLVLE 162

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A + D I+ T   +        + + G +  +P+ R+    DA 
Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA- 221

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQE------IKNDKIALILGAEGKGLRPKTQETATSMA 252
              H+ GF+   L+  D    L             K+AL+ GAE  GL+  T   A  + 
Sbjct: 222 DLFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVV 281

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + M   + +LNV+ A AVA + T  
Sbjct: 282 RIEMAHGVDSLNVAGACAVACWATAQ 307


>gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
 gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
          Length = 264

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 107/258 (41%), Gaps = 11/258 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   K++++  +  R       + + G H ++ AL +   ++  +   ++A   L  
Sbjct: 14  SKTNPRVKQLRAAFE-GRRKLAEGQIAMEGPHLMAEALRSG-MELKAIFVREDARELLSQ 71

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  +  +     V  E+  QG+A    P  +      R+  L +VL+ + D
Sbjct: 72  LDLAEENAVV--LSREVFASAVATESS-QGIAALAYPPEARMPK--RSDGLFLVLERLQD 126

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++RSA AF    ++     +   +    ++++G+   IP I +    + L  + 
Sbjct: 127 PGNLGTLVRSAEAFGAAAVLCLPGTADVWNQKALRASAGSAFRIPVIAVE--IERLFALQ 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + I   +      E        A+++G EG GL  +    +   A +  PG +++L
Sbjct: 185 NAGMRFIAAVAREGGTPEAIDLRGGCAVMIGNEGAGLSVELLALSDERATIPCPGAVESL 244

Query: 264 NVSNAAAVALYIT--QNH 279
           N + A ++ LY    Q  
Sbjct: 245 NAAVAGSLLLYAASVQRR 262


>gi|194337498|ref|YP_002019292.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309975|gb|ACF44675.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 269

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 107/253 (42%), Gaps = 13/253 (5%)

Query: 32  KMQSFNQ--KSRHTSQPENLFLYGVHTVSAA-LNNPSRKIFQLLATKNALARLDWDANLP 88
           K+Q + +  + +   Q       G+ TV    LN PS ++   L  +   A +   A  P
Sbjct: 13  KLQKYVKLHQKKFRDQERLFLAEGLRTVRELCLNLPSEEMLVALLVREGEAEVARFAQ-P 71

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVR---NSQLLMVLDHVND 143
               + ++  +   ++  + A  QG+         + P  +AV    +  L++ LD V D
Sbjct: 72  WKGKLFSIGEKECAQL-SETATSQGIFGVFRQQRPVEPAAEAVSATSDKSLIVALDDVQD 130

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+AV F  D +I +   +   +A   +S +G++  I +  +  L   L    
Sbjct: 131 PGNVGTILRTAVWFGADALICSTGTADRYNAKAVRSCAGSIYAIRHYGVDRLERELLWFK 190

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---II 260
             G+     S + K   E      K  L++G E  G+    +  A  +  +   G    +
Sbjct: 191 KQGYSITSSSLEGKDFREFSSWPAKQVLVIGNEANGISEPVKALADRLVRIPHSGRSVRV 250

Query: 261 KALNVSNAAAVAL 273
           ++LN + +AA+ +
Sbjct: 251 ESLNAAVSAAILM 263


>gi|295676810|ref|YP_003605334.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
 gi|295436653|gb|ADG15823.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. CCGE1002]
          Length = 262

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 102/252 (40%), Gaps = 19/252 (7%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T  AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGQPELCV-VTDGALR 60

Query: 80  RLDWDANLPHPFPVKTVPPQTI----DKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNS 132
             +  A       V  +    +    D + G+    VH  G+ L    L +P  + V  +
Sbjct: 61  HEEAQAI------VSRIDEHRLVTLPDALFGQLSNVVHGVGILLLVEKLDAPPPERVEQN 114

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VLD V D  N+G+ILRSA A   + +      + + S+ + +S  GA   +     
Sbjct: 115 --CLVLDGVQDAGNVGSILRSAAAAGIEHVFCAPGTAYAWSSKVLRSGMGAHFLLQIHED 172

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            + +  ++++           S   + +     +  +A + G EG G+    ++  +   
Sbjct: 173 VDASALIERLA---VPIAITDSHGAEAIYDCDLSRPLAWVFGNEGAGVSQVWRDAVSLRV 229

Query: 253 HLHMPGIIKALN 264
            +  PG +++LN
Sbjct: 230 TIPQPGGMESLN 241


>gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 268

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 95/260 (36%), Gaps = 5/260 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---D 82
           ++   K+++S   K +H  +       G+  ++ A       ++   A  +A   L    
Sbjct: 9   SNPLIKRVRSLRDK-KHRREEGLFLAEGLRILTEAREAGFIPVYIFFAADSAAHPLVQQL 67

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            +A               + K+ GK+     + +  +  L  +    R + + +V   + 
Sbjct: 68  IEAVEDKGGEAIETSRDILHKLSGKDNPQTVIGVFESFTLPLSSIDRRQAPIWLVAQSLR 127

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A    G+I         S    ++  GAL            D L  +
Sbjct: 128 DPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATAR-WEDFLVWL 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  IG S  + +  ++        +++G E +GL    ++    +  + M G   +
Sbjct: 187 RQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACDHLVKIPMMGRADS 246

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ A A+  Y   N   K
Sbjct: 247 LNVAVAGAIMAYEVLNQQRK 266


>gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761703|ref|ZP_04759790.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374011|gb|EER63544.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 268

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 5/260 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---D 82
           ++   K+++S   K +H  +       G+  ++ A       ++   A  +A   L    
Sbjct: 9   SNPLIKRVRSLRDK-KHRREEGLFLAEGLRILTEAREAGFIPVYIFFAADSAAHPLVQQL 67

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            +A   +           + K+ GK+     + +  +  L  +    R + + +V   + 
Sbjct: 68  IEAVEDNGGEAIETSRDILHKLSGKDNPQTVIGVFESFTLPLSSIDRRQAPIWLVAQSLR 127

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A    G+I         S    ++  GAL            D L  +
Sbjct: 128 DPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVRATMGALFTQKIATAR-WEDFLVWL 186

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  IG S  + +  ++        +++G E +GL    ++    +  + M G   +
Sbjct: 187 RQGEGDLIGTSLRATQDYQEPRYQTPSFVLVGNEAQGLPDSYEDACDHLVKIPMMGRADS 246

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+ A A+  Y   N   K
Sbjct: 247 LNVAVAGAIMAYEVLNQQRK 266


>gi|323302933|gb|EGA56737.1| Mrm1p [Saccharomyces cerevisiae FostersB]
          Length = 412

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 119/334 (35%), Gaps = 76/334 (22%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-------------QPENLFLYGVHTV 57
             +  K +H  KL    ++ K     NQKS  +               P   ++YG ++V
Sbjct: 77  DPYGKKKAHVEKL----KEIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSV 132

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            AAL NPSR     L     +               + V    ++ +     VH  +ALE
Sbjct: 133 YAALLNPSRNCHSRLLYHGTIPSKILQTVDELKVTTELVDKHRLNLLTNY-GVHNNIALE 191

Query: 118 TAPLLSPTLDAV----------------------------------RNSQLLMVLDHVND 143
           T PL    +  +                                  +   L + LD + D
Sbjct: 192 TKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITD 251

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +    +   K  
Sbjct: 252 PHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQ 311

Query: 204 SWGFQTI-------GLSSDS--KKPLEQEIKND-----KIALILGAEGKGLRPKTQETAT 249
             G  T          S      K +     N       + L++G E +G+R   +  + 
Sbjct: 312 EMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSD 371

Query: 250 SMAHLHMPG----------IIKALNVSNAAAVAL 273
               +   G          I+ +LNVS A A+ +
Sbjct: 372 FFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|254420044|ref|ZP_05033768.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196186221|gb|EDX81197.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 272

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 101/283 (35%), Gaps = 22/283 (7%)

Query: 1   MNLISKKKSEK-IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M  +S +   + I SL +     +R  H          +K R  +        G+  +  
Sbjct: 1   MEPMSARDEYRVITSLTNDTIKSVRALH---------MRKERDLTGA--FLAEGLKFIGE 49

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLA 115
           AL+   R    LL  + A      D            +  V    ++KI  ++   Q   
Sbjct: 50  ALDLG-RAPRMLLVGEEARPHPLLDRAKAETRKAGGDIIIVTHAILEKISRRD-NPQ-TV 106

Query: 116 LETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           L         LD++   ++   + L+ V DP N+G I+R+A A  C G+I         S
Sbjct: 107 LGVFDQAYAPLDSLDPTSAPCWVALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPYS 166

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               ++  G++  +   R ++    L    +W    +G   D+       +      +++
Sbjct: 167 VEAVRATMGSVFAVSITR-TDPEAFLAWRKTWPGSVVGTRLDATVSHRSAVMQKPSLILM 225

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G E  GL  +          + M G   +LN++ A  + +Y  
Sbjct: 226 GNEQAGLTDQLAAACDVNVKIPMRGRADSLNLAIATGIMVYAA 268


>gi|21244041|ref|NP_643623.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109661|gb|AAM38159.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 8/234 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDK 103
              + LYG++ V A        + +L  ++  + +        +      + V    + K
Sbjct: 60  AREVRLYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVEEADLSK 119

Query: 104 IVGKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    A H+G+  E       PL        +   L + LD V +PHN GAILRS+  F 
Sbjct: 120 LAAS-AHHEGVVAEVLRVTPHPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFG 178

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++     +   S   A+ A G  E +P +++ +   AL ++   GF       D  +
Sbjct: 179 VAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAIAATLVDGGQ 238

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +       ++  ++GAE  G+             +   G +++LNV++A AV 
Sbjct: 239 DVFAAALPQRLVYVMGAESDGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 292


>gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 261

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 18/257 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R + ++++   + R         + G   V+  LN+P R    L    N  +    DA  
Sbjct: 12  RAWARLKTRRGRERL----GLFLVEGERLVAELLNSPLRLEALLW---NVASDEPPDALW 64

Query: 88  PHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            HP        + PQ    +   E     +A+   P   P     R    ++VLD + DP
Sbjct: 65  RHPKADGRRYELSPQAFAAVADTETPQGLMAVAAIPRAEP-----RYGPRVLVLDAIQDP 119

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ++RSA AF    I+     +   +  + +++ G L  + +    +    L+    
Sbjct: 120 GNAGTLVRSAEAFGFGEILFGTGTADPYAPKVVRASMGGLFRV-HAIAGDAEAYLRAWRD 178

Query: 205 W--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  ++D+ +  ++     ++A+++G E +G+    ++ A     + M G  ++
Sbjct: 179 RHPDGVIVATAADASERCDEAPMAGEVAVVIGNEARGVSDAVRQLAQRCVAIPMAGKAES 238

Query: 263 LNVSNAAAVALYITQNH 279
           LN + A  + LY     
Sbjct: 239 LNAAMAGTILLYEAYRQ 255


>gi|197263980|ref|ZP_03164054.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242235|gb|EDY24855.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 345

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|46911829|emb|CAG18627.1| putative tRNA methyltransferase [Photobacterium profundum SS9]
          Length = 267

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A     +       P E+  VL+ +++GA   
Sbjct: 47  ATRQPDLTVCMEEVHKPNNVSAIIRTADAVGIHKV---HAVWPKENMRVLSHTSAGARNW 103

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N+ DA+ ++ + G Q +  + SD+             A+ILG E  G+  +  
Sbjct: 104 VELDTHDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEAL 163

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 164 AQADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 198


>gi|329912122|ref|ZP_08275682.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545704|gb|EGF30848.1| RNA methyltransferase [Oxalobacteraceae bacterium IMCC9480]
          Length = 262

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 99/261 (37%), Gaps = 9/261 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIFQLLATKNALAR 80
            R++  YK+++     S+   +     L GVH   A L +   P   +    AT N    
Sbjct: 6   SRDNPLYKELKQLATSSQARRKAGRTLLDGVHLCEAYLQHLGMPQLCVVSQSATINQEVV 65

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                          +P      I     V  G+ L         +  V  +   ++LD+
Sbjct: 66  PLLLQCEAGRTQCIVLPDALYQAIS---QVEHGVGLMFVVETPQLVMPVALAGSAVLLDN 122

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G+ILRSA A   + +  +   + + S  + ++  GA   +      +L + + 
Sbjct: 123 LQDPGNMGSILRSAAAAGIEYVFCSPGTAFAWSPKVLRAGMGAHFLLKIFENVDLAEVV- 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              +     +  SS   + +        +A + G EG+G+  +    AT    +   G +
Sbjct: 182 --RNASVPVLATSSHVAQRVYDIDLTQPVAWLFGHEGQGVEEQLLALATHQVAIPHIGAM 239

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LNV+  AAV  +      +
Sbjct: 240 ESLNVAACAAVCFFEQVRQRS 260


>gi|254821223|ref|ZP_05226224.1| TsnR protein [Mycobacterium intracellulare ATCC 13950]
          Length = 268

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 95/241 (39%), Gaps = 7/241 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V AA  +    +  +  T+ A  R           PV  V  +   
Sbjct: 26  RRRAGRFLAEGPNLVEAA--SRRGLVRDVFVTEVAEQRHASLLA-GLDCPVHPVT-ERAA 81

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K +       GL        +   D +  +  LL V   + +P N G ++R A A    G
Sbjct: 82  KALSDTVTPAGLVAVCDMPATHLDDVLAGAPQLLAVAVEIGEPGNAGTLIRLADAMGAAG 141

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R     +    ++++G++  +P +   +   A+  + + G Q +  + D ++ L+
Sbjct: 142 VILGGRSVDPYNGKCLRASAGSIFCVPVVVAPDALAAVDAVRAAGLQALATTVDGERRLD 201

Query: 222 Q--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  E+     A + G E  GL  +    A     + M G  ++LNV++AAA+ LY +   
Sbjct: 202 EAGELLGRPTAWLFGPESHGLPSEIASAADHRLRIPMSGGAESLNVASAAAICLYQSARA 261

Query: 280 F 280
            
Sbjct: 262 L 262


>gi|6324775|ref|NP_014844.1| Mrm1p [Saccharomyces cerevisiae S288c]
 gi|1346886|sp|P25270|MRM1_YEAST RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
           Full=21S rRNA [GM2251] 2'O-methyltransferase; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase;
           Flags: Precursor
 gi|431760|gb|AAA74564.1| ribosomal RNA methylase [Saccharomyces cerevisiae]
 gi|1420475|emb|CAA99414.1| PET56 [Saccharomyces cerevisiae]
 gi|285815081|tpg|DAA10974.1| TPA: Mrm1p [Saccharomyces cerevisiae S288c]
          Length = 412

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 119/334 (35%), Gaps = 76/334 (22%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-------------QPENLFLYGVHTV 57
             +  K +H  KL    ++ K     NQKS  +               P   ++YG ++V
Sbjct: 77  DPYGKKKAHVEKL----KEIKNQAKLNQKSHKSKFQNKDIALKLMNDNPIFEYVYGTNSV 132

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            AAL NPSR     L     +               + V    ++ +     VH  +ALE
Sbjct: 133 YAALLNPSRNCHSRLLYHGTIPSKFLQIVDELKVTTELVDKHRLNLLTNY-GVHNNIALE 191

Query: 118 TAPLLSPTLDAV----------------------------------RNSQLLMVLDHVND 143
           T PL    +  +                                  +   L + LD + D
Sbjct: 192 TKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPLGLYLDEITD 251

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +    +   K  
Sbjct: 252 PHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDKPLEFFTKSQ 311

Query: 204 SWGFQTI-------GLSSDS--KKPLEQEIKND-----KIALILGAEGKGLRPKTQETAT 249
             G  T          S      K +     N       + L++G E +G+R   +  + 
Sbjct: 312 EMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGVRTNLKMRSD 371

Query: 250 SMAHLHMPG----------IIKALNVSNAAAVAL 273
               +   G          I+ +LNVS A A+ +
Sbjct: 372 FFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 405


>gi|237753039|ref|ZP_04583519.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375306|gb|EEO25397.1| RNA methyltransferase [Helicobacter winghamensis ATCC BAA-430]
          Length = 228

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   V   L   S KI Q+L  K    +  + A      P+  V  +    +  + 
Sbjct: 1   MVVYGKRVVEYILTKHSDKIQQVLLAKEIDKK-QFRAFARLNVPLVRVDSKKAQSLA-RG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  LE APL+      ++    ++VL  ++D  NIGA+ R+A     DGI+     
Sbjct: 59  GNHQGYLLEIAPLVPLEFSTLKAMNFVLVLCGISDVGNIGALFRTAFVLGVDGIVICGLK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              +  VL +++SGA+  +P+  + N  D   ++   GF+  G S    +     +   K
Sbjct: 119 DFKQEGVL-RASSGAMLDMPFCLVYNALDVANELKFAGFRLYGASLKGVES--NGVTQGK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL LGAEG GL  K  +       +       +LNVS A A+ +
Sbjct: 176 KALFLGAEGNGLSAKILKKMDINLTIAQKREFDSLNVSTAGAILI 220


>gi|325285191|ref|YP_004260981.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324320645|gb|ADY28110.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 281

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 98/274 (35%), Gaps = 7/274 (2%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
            F + ++        +   KK      KSR   +     L G   +  AL   +  I  L
Sbjct: 11  TFVVMNTFKQITSLQNPLIKKTLVLKDKSRERKKSNLFVLEGARELQLALK-GNYSIETL 69

Query: 72  LATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--TLD 127
              K+ ++       + +     V  V      KI    A  +G+             L 
Sbjct: 70  FFCKDLISEQAITDLIKNNSTTNVIEVNLDVYQKIA-YRATTEGVVALVKSKNHTINNLQ 128

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L+++ +    P NIGA+LR+A A + D +I     +   +  + +S+ G +   
Sbjct: 129 LSSKKPLILIAEAPEKPGNIGALLRTADAANLDAVIIANPKTDLYNPNIIRSSVGCVFTT 188

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +  ++ +  +      T   +  + K           A+++G E  GL  +    
Sbjct: 189 KIATGT-TSEIIAYLKEHNIATYCAALTASKIYTTVDYTSGSAIVVGTEATGLSKEWLSN 247

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +     + M G I ++NVS AAAV ++  +   +
Sbjct: 248 SNQNIIIPMEGQIDSMNVSVAAAVVIFEAKRQRS 281


>gi|304569674|ref|YP_009267.2| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232387|gb|ADP85241.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           RCH1]
          Length = 383

 Score =  174 bits (443), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVGKEA 109
           G+  V   L +   +I  +   +       D   +L     V+   V  Q +DK+     
Sbjct: 144 GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKLYAGG- 202

Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+           LD +          L++ LD V DP N G + RS  A    G+I
Sbjct: 203 -HQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI 261

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQ 222
             +  +    A   ++A+GALE +P  R++NL  AL +    G+   G +  +       
Sbjct: 262 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 321

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   L+LG E KG+RP   +   ++ H+ M     + NV+ A A+ L
Sbjct: 322 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 372


>gi|261883694|ref|ZP_06007733.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 160

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/154 (55%), Positives = 111/154 (72%)

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           PFPV+ V P+ IDK  G EAVHQG+ +E  PL +  L  +R S LL+VLD V DPHN+GA
Sbjct: 3   PFPVEIVDPRDIDKETGSEAVHQGVMIEAEPLRTRKLSELRESPLLLVLDQVTDPHNVGA 62

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RSAVAF    +ITT R+SP E+ VLAK+ASGALE I +I + NL +A++++H+ GFQT
Sbjct: 63  IMRSAVAFGAGALITTSRHSPQETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQT 122

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           IGL S     +E  +  ++IAL+LGAEG GLR K
Sbjct: 123 IGLDSQGPLEMEATLSGNRIALVLGAEGXGLRQK 156


>gi|229815427|ref|ZP_04445759.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
           13280]
 gi|229808960|gb|EEP44730.1| hypothetical protein COLINT_02475 [Collinsella intestinalis DSM
           13280]
          Length = 303

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 103/271 (38%), Gaps = 21/271 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--NALARLDWDANL 87
           Y K+     +S    +           +  A+      +  LL  +    L  L      
Sbjct: 20  YTKLTERQLRSVLEPEKGIFIAESGKVIERAVEAGLEPVSFLLGERWLEQLTPLLDKVAD 79

Query: 88  PHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP---TLDAVRNSQ-----LLM 136
            HP    PV       ++++ G       LA    P L+     LD +          + 
Sbjct: 80  AHPELEIPVFVGAMDLLEQLTGFSVTRGALAAFRRPPLADPGAFLDGLVERADGRPVRVC 139

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL+ + D  N+GAI RSA A + DGI+ +           A+ + G +  +P+ RI +  
Sbjct: 140 VLEGIVDHSNVGAIFRSAAALNVDGILVSPTCVDPLYRRSARVSMGTVFQVPWTRIGSEA 199

Query: 197 DA-----LQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETA 248
            A      + +   GF    ++ SD    L+     D  + A+ +G EG GL+ +T    
Sbjct: 200 RAWPYDGFEVLKGAGFTCSAMALSDDSVSLDDPSLLDIERHAIFMGTEGTGLQARTIAGC 259

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   + +LNV+ A+AVA +    H
Sbjct: 260 DKTIRIPMAHGVDSLNVAAASAVAFWQLCPH 290


>gi|148926322|ref|ZP_01810006.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844714|gb|EDK21819.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 227

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    ++ +       F +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I     
Sbjct: 59  GNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                  + +++SGA   +P +  ++    + ++   GF         K+    +I N K
Sbjct: 119 --LTMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
 gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
          Length = 284

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 95/257 (36%), Gaps = 8/257 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK----NALARLD 82
           +   K +++  QK +H  +       G+  V  AL+     I  L+  +    +AL    
Sbjct: 26  NPIVKDIRALVQK-KHRDETGLFLAEGLKLVIDALDAGWE-IETLVVARAAQDSALLHKT 83

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
               +     +     + ++ I  ++     + +     +     A + +++L+ LD V 
Sbjct: 84  ASRTVALGADLIEANHKVLEAITRRDNPQNAVGVFRKKTVPLERLAPKPNEVLVALDRVR 143

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+A A    G++         S    ++  G++  +P  R+      ++  
Sbjct: 144 DPGNLGTVLRTADAVGAKGVVLVGETVDPFSLEAVRATMGSIFAVPVSRVGE-AAFIEWR 202

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                  IG          +     K   L++G E  GL         ++  +   G   
Sbjct: 203 AGCRAPLIGTHMSGATDYRKPDYASKGSVLVMGNEQAGLTDALANACDTLVRIPQVGRAD 262

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++ A  V L+  + 
Sbjct: 263 SLNLAVATGVMLFEARR 279


>gi|319781460|ref|YP_004140936.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167348|gb|ADV10886.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 285

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 90/256 (35%), Gaps = 6/256 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA---TKNALARLDW 83
           +   K +++  QK +   Q       G+  V  AL+   +    + A     NA      
Sbjct: 20  NPLVKDIKALAQK-KFRDQQNAFMAEGLKLVIDALDLGWQIRTLVFAKAGRGNAAVEKVA 78

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     V  V  + +  I  ++     + + +   L+       N  + + LD V D
Sbjct: 79  ARTVAAGGMVLEVSEKVLVAITRRDNPQMVVGVFSQKFLALKDVRADNGDVWVALDRVRD 138

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+  A    G+I     +   S    ++  G++  +P  + +     L    
Sbjct: 139 PGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAKAT-TEAFLAWRG 197

Query: 204 SWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +     G              +   + L++G E +GL      +   +  +   G   +
Sbjct: 198 GFSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLAASCDRLLRIPQAGRADS 257

Query: 263 LNVSNAAAVALYITQN 278
           LN++ A  + L+  + 
Sbjct: 258 LNLAVATGIMLFEIRR 273


>gi|213425263|ref|ZP_03358013.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 274

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 30  RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 89

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 90  ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 148

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 149 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 207

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 208 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 267

Query: 274 YITQN 278
           +  QN
Sbjct: 268 WWRQN 272


>gi|84624847|ref|YP_452219.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368787|dbj|BAE69945.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 303

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 8/232 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIV 105
            + LYG++ V A      + + +L  ++  + +        +      + V    + K+ 
Sbjct: 63  EMRLYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLA 122

Query: 106 GKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              A H+G+  E       PL        +   L + LD V +PHN GA+LRS+  F   
Sbjct: 123 AS-AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVA 181

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++     +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +
Sbjct: 182 GLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDV 241

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                  ++  ++GAE +G+             +   G +++LNV++A AV 
Sbjct: 242 FAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 293


>gi|302383631|ref|YP_003819454.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194259|gb|ADL01831.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 265

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 91/251 (36%), Gaps = 9/251 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANL 87
           K +++ + + +           G+  +  AL+        ++  +     L      A L
Sbjct: 15  KGIRALHMR-KEREVTGQFLAEGLKFIGEALDQGRAPRLLMVGMEARPHPLLDRAKAATL 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPH 145
                + TV    ++KI  +E   Q   L         LD +   ++   + L+ V DP 
Sbjct: 74  EAGGEIVTVTHPILEKISRRE-NPQ-TVLGVFDQAYTRLDQLDPASASCWIALEQVRDPG 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A  C G+I         S    ++  G++  +  +R + +   L    +W
Sbjct: 132 NLGTIIRTADAAGCGGVILIGDCVDPFSVEAVRATMGSVFAVAIVRCT-VEAFLAWRTAW 190

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
               +G   D+     +        +++G E  GL             + M G   +LN+
Sbjct: 191 PGSVVGTRLDATVSYREAAYAGPTLILMGNEQAGLTDGLAAACDVNVKIPMRGRADSLNL 250

Query: 266 SNAAAVALYIT 276
           + A  +  Y  
Sbjct: 251 AIATGIMAYAV 261


>gi|86149717|ref|ZP_01067947.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597269|ref|ZP_01100504.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561834|ref|YP_002343613.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839985|gb|EAQ57244.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190330|gb|EAQ94304.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359540|emb|CAL34324.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|315928789|gb|EFV08060.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 227

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    ++ +       F +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I     
Sbjct: 59  GNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K
Sbjct: 119 LAMEG--VIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|311113269|ref|YP_003984491.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944763|gb|ADP41057.1| RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 314

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 120/318 (37%), Gaps = 52/318 (16%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           MNL+ +  S  + S  + H  ++    RD  K+ +   +++     +   + G   V  A
Sbjct: 1   MNLLERISSPTVMS--NPHADRV----RDIAKLSTRRGRAKK----KQFMVEGPQAVREA 50

Query: 61  LNNPSRK--IFQLLATKNALARLDWDANL---PHPFP---------VKTVPPQTIDKIVG 106
           L    +   +  +  T++A  R    A L    H  P         ++ V  + +  +  
Sbjct: 51  LKAHLQSPVLDAVYVTESAYERHPDIAELLEQAHGTPTPEEGRRVFMRVVTDEVLAAMAD 110

Query: 107 KEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
                QG+   +  + +       +   N +L+ VL  + DP N G ILR A A   D +
Sbjct: 111 S-VTPQGIIAISFMVDTSFSVLWGENALNPKLIAVLSRIQDPGNAGTILRVADAAGADLV 169

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           ITTK      +    +S +G+L H+P I+   L +  + + S G   +         L+ 
Sbjct: 170 ITTKGSVDLYNPKTVRSTAGSLFHVPIIQGVELEEFAEDVKSQGTVVLAADGYGTVNLQD 229

Query: 223 -----------------------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                                     +     + G E +GL  + +  AT    + + G 
Sbjct: 230 LIDHAAVLRAGLDGEAPAGVKGAFDLSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGA 289

Query: 260 IKALNVSNAAAVALYITQ 277
            ++LNV  AAA+ LY + 
Sbjct: 290 AESLNVGTAAAICLYASA 307


>gi|57237161|ref|YP_178173.1| RNA methyltransferase [Campylobacter jejuni RM1221]
 gi|86151169|ref|ZP_01069384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315123758|ref|YP_004065762.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|57165965|gb|AAW34744.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
 gi|85841516|gb|EAQ58763.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|284925446|gb|ADC27798.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315017480|gb|ADT65573.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315057593|gb|ADT71922.1| rRNA methylase [Campylobacter jejuni subsp. jejuni S3]
          Length = 227

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    ++ +       F +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I     
Sbjct: 59  GNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   +P    ++    + ++   GF         K+    +I N K
Sbjct: 119 LAMEG--VIRTSSGAALDLPIAISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|302561652|ref|ZP_07313994.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302479270|gb|EFL42363.1| TrmH family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 277

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 93/254 (36%), Gaps = 20/254 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A          LL  K A    D      
Sbjct: 14  DYTGLTDVELRRRREPAEGLFIAEGEKVIRRAGEAGYAMRSMLLTPKWADVMRDVIDRAE 73

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--------------QL 134
              PV  V P   +K+ G   VH+G          PT   V                 + 
Sbjct: 74  --APVYVVEPALAEKVTGYH-VHRGALASMQRTPLPTAADVLRGVGTMPSSAPREAAVRR 130

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + V + + D  N+GA  R+A A   D ++ T R +        K + GA+ H+P+ R+++
Sbjct: 131 VAVFEDLVDHANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGAVFHVPWTRLTS 190

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSM 251
                      GF T  L  D K    +E+   +++K+ L+LG EG GL      +A   
Sbjct: 191 WPQDAGIFREHGFVTAALCLDEKSITLEELAARRHEKLVLMLGTEGDGLSADALRSADEW 250

Query: 252 AHLHMPGIIKALNV 265
             + M G + +LNV
Sbjct: 251 VRIPMSGGVDSLNV 264


>gi|256825192|ref|YP_003149152.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256688585|gb|ACV06387.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 269

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 4/241 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL- 87
           DY  +     + R   +           +  AL         LL  +      +  A + 
Sbjct: 15  DYFGLTDVALRRRLEPERGLYMAESEKVIRRALAAGHVPRSMLLTPRWVEDLAELVAEVE 74

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
               PV    P  ++ + G       LA    P L    D +  ++ ++V++ V D  N+
Sbjct: 75  ATGAPVYVAEPAVVESMTGFHLHRGALAAMQRPELPAVADLLGGARRVVVVEDVVDHTNV 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RS  A   D ++ T R +        + + G +  +P+ RI      + ++   GF
Sbjct: 135 GAIFRSVAALGADAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIDPWPAGMAELQGAGF 194

Query: 208 QTIGLSS-DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               L+  D    ++Q      +++AL+LG EG GL P+T E A     + M G + +LN
Sbjct: 195 TVAALALRDDAVTMQQLAADPPERLALVLGTEGDGLAPQTVEGADLAVRIPMSGGVDSLN 254

Query: 265 V 265
           V
Sbjct: 255 V 255


>gi|254507286|ref|ZP_05119422.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
 gi|219549746|gb|EED26735.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus 16]
          Length = 227

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 5/166 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           LE    +   L A R + L + L+ V+ P+N+ A++R+A A     +       P+E   
Sbjct: 3   LERYNRIQEVLKA-RQADLTLCLEEVHKPNNVSAVIRTADATGVHKV---HAVWPNEMRT 58

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
           L+ +++GA   +      ++ DA+ ++ S G Q +  + S++     +       A+ILG
Sbjct: 59  LSHTSAGARNWVDVETHDSIEDAINELKSQGMQVLVTNLSETAVDFREIDYTKPTAIILG 118

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +E  G   + ++ A     + M G++++LNVS A+AV LY  Q   
Sbjct: 119 SEKTGASEQAKQLADQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|217967693|ref|YP_002353199.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
 gi|217336792|gb|ACK42585.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
          Length = 269

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 109/284 (38%), Gaps = 28/284 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS   +E I  +   H                         + +   + G   +  A
Sbjct: 1   MKFISSPSNEVIKEVIKLHDKNK-------------------RKKLKKCIVEGWRLIQDA 41

Query: 61  LNNPSRKIFQLLATKN-ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
             N    I +L+ +K+    R D        + +  V    ++KI   E    G+     
Sbjct: 42  KENGIF-IEKLIISKSLWNKRRDEILKSFSSYDLYIVEDNLMEKISLMETPP-GIMGVFP 99

Query: 120 PLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             L P  + +  +N+++++  D + DP N+G I+R A     D +I ++      +  + 
Sbjct: 100 LFLFPKWELLEEKNNKIVLFSDDIQDPGNLGTIIRIADGVGVDAVILSENTVDPYNYKVI 159

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + ++G++  +P   +S+    ++     G++ I       K   QE   +   LILG E 
Sbjct: 160 RGSTGSIFRVPI-WVSDKKTFIEFFK--GWKVIIADPKGSKVYFQENLRESFVLILGNEA 216

Query: 238 KGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G R +   +    +  + +   + +LNVS AA+V L+  Q   
Sbjct: 217 WGTRKEKYIDLDPILLKIPLREGVDSLNVSIAASVFLFEAQRQR 260


>gi|300744017|ref|ZP_07073037.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
 gi|300380378|gb|EFJ76941.1| putative 23S rRNA methyltransferase [Rothia dentocariosa M567]
          Length = 302

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 107/293 (36%), Gaps = 42/293 (14%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDW 83
            H D  +  +     R  ++ +   + G   V  AL    +   +  +  T++A  R   
Sbjct: 4   PHADRVRDIAKLSTRRGRTKKKQFMVEGPQAVREALKAHLQSPVLDAVYVTESAYERHPD 63

Query: 84  DANL---PHPFP---------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----D 127
            A L    H  P         ++ V  + +  +       QG+   +  + +       +
Sbjct: 64  IAELLEQAHGTPTPEEGRRVFMRVVTDEVLAAMADS-VTPQGIIAISFMVDTSFSVLWGE 122

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              N +L+ VL  + DP N G ILR A A   D +ITTK      +    +S +G+L H+
Sbjct: 123 NALNPKLIAVLSRIQDPGNAGTILRVADAAGADLVITTKGSVDLYNPKTVRSTAGSLFHV 182

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----------------------EI 224
           P I+   L +  + + S G   +         L+                          
Sbjct: 183 PIIQGVELEEFAEDVKSQGTVVLAADGYGTVNLQDLIDHAAVLRAGLDGEAPAGVKGAFD 242

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     + G E +GL  + +  AT    + + G  ++LNV  AAA+ LY + 
Sbjct: 243 LSRPTMWLFGNEAQGLSAEEKSAATMRIAVPVYGAAESLNVGTAAAICLYASA 295


>gi|226360105|ref|YP_002777883.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226238590|dbj|BAH48938.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 269

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT--V 96
           ++    +     + G ++V  AL      +  L  T +A  R        H   V+T  V
Sbjct: 19  RTAERRKVGRFLVEGENSVGEALATHP--VHDLFYTADAEQRYSALIERAHAAGVRTSLV 76

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAV 155
             + +  +        GL      L  P  +A+   ++LL V   V +P N G ++R A 
Sbjct: 77  TDRAVRALSDTVTPP-GLVAVCELLDVPLAEALGPGTRLLAVPVAVAEPGNAGTVIRVAD 135

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D  I         +    ++++G+L H+P +R  +    L  + + G Q +  ++D
Sbjct: 136 AVGADAAILAGDSVDPHNGKCVRASAGSLFHLPVVRERDTAAVLDTISAAGIQLLATAAD 195

Query: 216 SKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  L+          A + G E  GL   T   A     + + G  ++LN++ AA++ L
Sbjct: 196 GEVDLDDADELLARPTAWLFGNEAHGLDAATAARADHRVRIPIHGRAESLNLATAASICL 255

Query: 274 YITQN 278
           Y +  
Sbjct: 256 YSSAR 260


>gi|238784018|ref|ZP_04628034.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
           43970]
 gi|238715126|gb|EEQ07122.1| tRNA guanosine-2'-O-methyltransferase [Yersinia bercovieri ATCC
           43970]
          Length = 230

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +     +  +E      SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHA--IWPTTEMYTRLSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++TDA+  + S G Q +    SD      +        +++G E  G+  +   
Sbjct: 72  QVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|253584032|ref|ZP_04861230.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251834604|gb|EES63167.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 255

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 109/278 (39%), Gaps = 31/278 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSA 59
           M+ I+  ++  I  +K     K R                    + E LF+  G      
Sbjct: 1   MDYINSLENSTIKKIKKLKIKKYR--------------------EEEQLFIAEGRK---- 36

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
            L+ P      +      +                 V  +   ++  +E   QG+ +   
Sbjct: 37  FLDFPFEPEIIIFRESYEITEEIQLKLKKFQCRKIVVSEKVFTQLTSQE-NSQGVII-IY 94

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P +   L+ ++ +  ++VLD + DP N+G I+R A A     I+ TK      +  + +S
Sbjct: 95  PYIKGALENLQKN--VVVLDKIGDPGNLGTIIRVADAAGFKDILLTKGSVDCYNEKVVRS 152

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGK 238
           + G++ ++  I +    + +  +    ++ +  + + +     Q    +K A++ G+EG 
Sbjct: 153 SMGSIFNMNIIYMEE-EELIALLKKEEYKIVVTALEKNSVSYTQMKLAEKNAIVFGSEGD 211

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G+     +       + + GI ++LNV+ A+ + LY T
Sbjct: 212 GVSQNFLKVCDEKIIIPIYGIAESLNVAMASGIILYKT 249


>gi|189347569|ref|YP_001944098.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
 gi|189341716|gb|ACD91119.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
          Length = 263

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 102/249 (40%), Gaps = 10/249 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPH 89
           K+     + ++       F  G  TVS  L        +  LL  +   A   +  +  +
Sbjct: 13  KLYGKLHQKKYRDSEGLFFTEGFRTVSELLEALPEPGLLDALLFREGEQAAEGFYGS--Y 70

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              V T+  +   ++          G+  + + L     +    S L++ LD V DP N 
Sbjct: 71  SGRVFTLTEKECARLSQTATPSGIFGVFRQQSALPFEP-ERTDGSSLIVALDDVQDPGNA 129

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+A  F  D +I +   +   +A   +S++G++  +P+  + +L   L ++   G+
Sbjct: 130 GTILRTAAWFGADAMICSAGTADRYNAKAVRSSAGSIYALPHYGVDSLETELLRLAGRGY 189

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALN 264
             I  S   +   E     +K  L++G E  G+    Q  A  +  +   G    +++LN
Sbjct: 190 AVIASSLAGQDFREFTSWPEKQVLVIGNEANGVSRPVQALAGRLVRIPHIGSKPRVESLN 249

Query: 265 VSNAAAVAL 273
            S +AA+ +
Sbjct: 250 ASVSAAILM 258


>gi|313665349|ref|YP_004047220.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
 gi|312949359|gb|ADR23955.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
          Length = 255

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 31/281 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI                  K++     + +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKI------------------KEILKLKDR-KHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T  AL  L  +  +P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKALEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +  +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENTK-IDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEG 237
            G L  +  +    L   + ++H   +  IG S  D  KPL +     +DK ALI+G EG
Sbjct: 154 QGNLFQVNLVN-EYLVKVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEG 212

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           KG+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 213 KGISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253


>gi|331703507|ref|YP_004400194.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
 gi|328802062|emb|CBW54216.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
          Length = 255

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 31/281 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI                  K++     + +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKI------------------KEILKLKDR-KHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T  AL  L  +  +P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKALEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +  +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENTK-IDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEG 237
            G L  +  +    L   + ++H   +  IG S  D  KPL +     +DK ALI+G EG
Sbjct: 154 QGNLFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEG 212

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           KG+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 213 KGISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253


>gi|167647056|ref|YP_001684719.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349486|gb|ABZ72221.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 262

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 93/251 (37%), Gaps = 5/251 (1%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++ + + +   Q       G+  V  A++        +     A   +   A 
Sbjct: 10  NATVKAVRALHMR-KEREQSGLFLAEGLKIVIEAIDCGHAPKILMYGPDAADHPMLQKAA 68

Query: 87  ---LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    V  V  + ++K+  ++     + + T      +     ++   + +  V D
Sbjct: 69  QACFKAGGEVIEVNREILEKVSRRDNPQAVVGVFTQVYTPLSAIVPESAPCWVAMQAVRD 128

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+A A  C G+I         S    ++  G++  +   + +++ + L    
Sbjct: 129 PGNLGTVIRTADAAGCGGVILVGDCVDPYSVEGVRATMGSIFAVKIAK-ASVQEFLAWRE 187

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +W    IG    +    +         +++G E +GL P+          + M G   +L
Sbjct: 188 TWPGSVIGTLLTATVDHKSADYVKPSLILMGNEQQGLPPELAAACDVNVKIPMRGRADSL 247

Query: 264 NVSNAAAVALY 274
           N+S A  + +Y
Sbjct: 248 NLSVATGIMIY 258


>gi|168335308|ref|ZP_02693406.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 262

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 88/254 (34%), Gaps = 9/254 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K ++    K     +     + G   V       + +I   +AT+N        ++
Sbjct: 11  NPIIKNVKELQSKKSTRQKESLFVVXGTRAVHDL--ANTMEILYFIATQNIDX-----SD 63

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPH 145
                   TV       I       QGL            D  ++ +   ++L+ + DP 
Sbjct: 64  YNPKTQWITVSDNVYTHISDT-KTPQGLMAIVKQRNKSLNDFTIKQNGTYLILEGIKDPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A     D I  TK      S  + ++  GA+  I  IR   +T  +      
Sbjct: 123 NLGTIVRTAYGLFVDAIFLTKDCVELYSPKVVRATMGAISKIDIIRNYEMTSYVDFFREN 182

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             +           L     +   A+++G E  G+   T+  A S   +     +++LN 
Sbjct: 183 KVKIYATDLYQSNNLYTTKFDGSSAIVIGNEATGISEYTRAQADSTIKIPTRDNLESLNA 242

Query: 266 SNAAAVALYITQNH 279
           + A ++ LY     
Sbjct: 243 AIATSIVLYEVARQ 256


>gi|269977219|ref|ZP_06184192.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|269934522|gb|EEZ91083.1| rRNA methyltransferase [Mobiluncus mulieris 28-1]
          Length = 307

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 102/266 (38%), Gaps = 18/266 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-- 86
           DY  ++  N +    ++           +   L    R    LL T + L  L       
Sbjct: 44  DYTNLKDVNLRRSFEAEHGLFLAESNEVIMRVLRAGYRP-RSLLVTPHWLEILAPVLAST 102

Query: 87  -------LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
                     P PV       ++++VG       +A    P L      +  S+ ++VL+
Sbjct: 103 SCTHGDPEGGPIPVFVATEAVLEQLVGFHLHRGAIASMERPALPDPAAILAQSRRVLVLE 162

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A + D I+ T   +        + + G +  +P+ R+    DA 
Sbjct: 163 DLVDHTNVGAAVRSAAACNYDAILVTPSCADPLYRRAVRVSMGTIFQVPWTRLKRWPDA- 221

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQE------IKNDKIALILGAEGKGLRPKTQETATSMA 252
              H+ GF+   L+  D    L             K+AL+ GAE  GL+  T   A  + 
Sbjct: 222 DLFHAAGFELAALALRDDAVDLRDYARKLAGDSTRKVALVAGAERDGLKRSTVAKADYVV 281

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + M   + +LNV+ A AVA +    
Sbjct: 282 RIEMAHGVDSLNVAGACAVACWAIAQ 307


>gi|56412529|ref|YP_149604.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361464|ref|YP_002141100.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56126786|gb|AAV76292.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197092940|emb|CAR58370.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 345

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDGA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|320334385|ref|YP_004171096.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM
           21211]
 gi|319755674|gb|ADV67431.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM
           21211]
          Length = 266

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 5/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            + + K++    ++ R  +Q     + G   +  A       +  L   +   +     A
Sbjct: 12  QNPEVKRLTRLRER-RARTQERAFLIEGARELERA-AQGGVPLRTLYMCEELFSPDAHQA 69

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                 P +    +   +         GL    A L +     + +  LL+VL  V  P 
Sbjct: 70  LPALHAPDRVHLSRAAFEKASVRENPDGLLA-VADLPARPAPDLPHDALLLVLVGVEKPG 128

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+LRSA     D ++        E+  + +++ G++       +    DAL  + + 
Sbjct: 129 NVGALLRSADGVGADAVLVVGG-VDLENPNVIRASQGSVFTQTLFTLPE-ADALPWLRAQ 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           GF+   ++ D  +         ++A+ LGAE  GL    +E       + M G   +LNV
Sbjct: 187 GFRVAAITPDGAQNYWDADLTGRVAVCLGAEHAGLPAAWREHPDLKLAIPMRGAADSLNV 246

Query: 266 SNAAAVALYITQNHFA 281
           S A A+ LY       
Sbjct: 247 STAGALVLYEALRQRG 262


>gi|313123601|ref|YP_004033860.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280164|gb|ADQ60883.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 291

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 121/296 (40%), Gaps = 26/296 (8%)

Query: 1   MNLISKKKSE-KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D       +   DY + Q F+    +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRL----KLFTDYNEAQLFHY---YEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLLATKNALAR--LDWDANLPH------PFPVKTVPPQTIDKIVGKEAVH 111
           A+      I  +L  + AL R   D+D  L         FP+       + ++ G   + 
Sbjct: 54  AIRAGYEPI-AMLVEEKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRQLPGYNLLR 112

Query: 112 QGLALETA---PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             +        P L     A+     + VL+ V +P N+GAI RSA A   DG++ T   
Sbjct: 113 GAICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDS 172

Query: 169 SPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI 224
           S        + + G +  +P+  +         +  +   GF+T  ++  D+   ++  +
Sbjct: 173 SDPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPV 232

Query: 225 KN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               D++A+ILG+EG GL P+T   +     + M   + +LNV+ A+A+A +  + 
Sbjct: 233 LKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288


>gi|152981475|ref|YP_001353733.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281552|gb|ABR89962.1| RNA methyltransferase, TrmH family [Janthinobacterium sp.
           Marseille]
          Length = 264

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 25/268 (9%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  YK+++     S+   +     L GVH   A L         ++           
Sbjct: 8   SRDNPLYKELKHLAASSQARRKAGRTLLDGVHLCEAYLQKVGLPPLCIVGE-------TA 60

Query: 84  DANLPHPFPVK---------TVPPQTIDKIVG--KEAVHQGLALETAPLLSPTLDAVRNS 132
             N      V+          V P  +   +   +  V     ++T  + +P     R +
Sbjct: 61  MLNGEVTVIVQQCSDSTTQCIVLPDALFHALSQVEHGVDLLFVIDTPEMPTPP----RLT 116

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           Q  ++LD V DP N G+I+RSA A     +  +   + + S  + ++  GA   +     
Sbjct: 117 QSAVLLDKVQDPGNFGSIVRSAAAAGIKQVFCSAGTTFAWSPKVLRAGMGAHFLLEIFEG 176

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +L+D L +        I  SS ++K L +      +A + G EG+G+       AT   
Sbjct: 177 VDLSDLLGR---ADIPVIATSSHAEKQLYELDLRQPVAWLFGHEGQGVADDLLARATHRI 233

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            +   G I++LNV+ ++AV  +      
Sbjct: 234 SIPHLGDIESLNVAASSAVCFFEQLRQR 261


>gi|26553475|ref|NP_757409.1| rRNA methylase [Mycoplasma penetrans HF-2]
 gi|26453481|dbj|BAC43813.1| rRNA methylase [Mycoplasma penetrans HF-2]
          Length = 238

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 111/238 (46%), Gaps = 21/238 (8%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G   V  A      ++ ++          ++ +       +  V  +  DK    E VH
Sbjct: 5   FGKKAVIEAFKQ--NELSEVYYVSYFDELKEFKS---KNIKLNKVNKKFFDK---YEVVH 56

Query: 112 Q---GLALETAPLLSPTLDAV--------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           Q   G+A E++  +    D+          + ++++VLD + DP N GAI R++ +F   
Sbjct: 57  QNILGIAKESSLTIHTDFDSFIEKINNLNTDKKIILVLDEIQDPGNFGAICRTSKSFQVA 116

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GII  K      +  + K++ G + ++ +++++NL++ L K+    + T+  + D K   
Sbjct: 117 GIIFKKNNQIQINETVIKTSLGTVNYLNFLKVNNLSEVLNKLKKENYWTVCTALDEKSIP 176

Query: 221 EQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             + K D  K+ +I+G E KG+    ++ +  +  + M   +++LNVS + A+ LY  
Sbjct: 177 LSKFKTDINKLVVIVGNENKGVSELIKKDSDFIVKIEMDSSVQSLNVSVSTAIILYYL 234


>gi|117928367|ref|YP_872918.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
 gi|117648830|gb|ABK52932.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
          Length = 304

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 7/241 (2%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY+ +     + R               +  AL    R I     +   L  L  D    
Sbjct: 47  DYRALTDVELRKRVEPAHGIFIAESALVIQRALAAGYRMI-SAFVSDRWLDELA-DQLSS 104

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              PV    P+ +  + G   VH+G LA      LS   + +R S+ ++VL+ VN+  N+
Sbjct: 105 VEAPVYVGAPEVLQSVTGFH-VHRGALAAFARRPLSSVEEILRTSRRIVVLEDVNNHTNL 163

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+ R A A   DG++ + R +        + + GA+  IPY R     D L  + +  F
Sbjct: 164 GAVFRCAAALGMDGVLLSPRCADPLYRRSVRVSMGAVFAIPYARFDTWPDELTGVSAAQF 223

Query: 208 QTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + + L+ D         +    ++IAL+LGAEG GL  +  + A     + M   + +LN
Sbjct: 224 RLLALTPDPAATDIRTLRVAAGERIALMLGAEGPGLSKQALDRAELRVRIPMHAGVDSLN 283

Query: 265 V 265
           V
Sbjct: 284 V 284


>gi|256384063|gb|ACU78633.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384895|gb|ACU79464.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455884|gb|ADH22119.1| rRNA methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 255

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 31/281 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI                  K++     + +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKI------------------KEILKLKDR-KHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T  AL  L  +  +P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKALEILKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +  +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENTK-IDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEG 237
            G L  +  +    L   + ++H   +  IG S  D  KPL +     +DK ALI+G EG
Sbjct: 154 QGNLFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEG 212

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           KG+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 213 KGISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253


>gi|194334722|ref|YP_002016582.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
           271]
 gi|194312540|gb|ACF46935.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
           271]
          Length = 265

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 100/250 (40%), Gaps = 10/250 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANL 87
            K+    +QK ++  +       G+ TVS  L        +  L    + LA + +    
Sbjct: 14  IKRFARLHQK-KYREREGCFLAEGLRTVSELLRQMPSVEALVALFVGADQLALIPFPERY 72

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHN 146
                   +  + + ++       QG+           L  A     L++ LD V DP N
Sbjct: 73  REKL--FLLEQEEMRRLAATT-TSQGVIGVFRMGSEDRLSRADEGPSLVVALDDVQDPGN 129

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R+A  F    +I+ +  +   +    +S++G+L  +      +L   L ++ + G
Sbjct: 130 VGTIIRTAAWFGAAAVISGRGTADCYNPKSVRSSAGSLYGLELYSADDLGVELGRLQARG 189

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM---PGIIKAL 263
           F  +  S         ++   ++ L++G E  G+    Q+ + SM  +        +++L
Sbjct: 190 FHIVTASLQGTDIRAFKVWPPRLVLVIGNEANGVSLPIQKISDSMVMIPHGPASPHVESL 249

Query: 264 NVSNAAAVAL 273
           N + +AA+ +
Sbjct: 250 NAAVSAAILI 259


>gi|302530010|ref|ZP_07282352.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
 gi|302438905|gb|EFL10721.1| RNA methyltransferase TrmH [Streptomyces sp. AA4]
          Length = 233

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 7/229 (3%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
             AL +P  ++ +++    A      +   A      PV+      +  + G     QG+
Sbjct: 2   LEALGDPDLRVDKVILADTARGPAAAEIQRAAKAAGVPVQRASAHRVKVLAGNGKQDQGV 61

Query: 115 ALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             +        L+  LD  R    +++LD +  P N+G ILR+A A    G+I  +R   
Sbjct: 62  LADVVAPRMRALAAALDDRRPPARVLLLDGITTPANVGMILRTATAAGLSGVIVPRRGVA 121

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
           +   ++ KS++G     P +R  +  +A + +   G+    L + +   +       + A
Sbjct: 122 ALDPMVVKSSAGVAFRAPVLRCGSAREAAELLVEAGYSLFALGASATTSIFDAELPQRSA 181

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +LG E +G+     E  T    + MPG +++LNVS AAAV  +     
Sbjct: 182 FVLGGETEGVGEAVAELVTEWLSIPMPGDVESLNVSAAAAVLSFELVRR 230


>gi|161502249|ref|YP_001569361.1| putative methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863596|gb|ABX20219.1| hypothetical protein SARI_00277 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 345

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 95/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K+ G E  H G+           +   +    +   ++ L+ + +PHN+G ++RS  
Sbjct: 161 ELAKVSGTE-HHGGVCFLIKKRNGMTVKQWVKQAADQDCVLALEDIANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFGATLPEKMVLVLGREYDFLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|66767332|ref|YP_242094.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|66572664|gb|AAY48074.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 300

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 8/232 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIV 105
            L LYG++ + A      + + ++  T+  + +        +      + V    + K+ 
Sbjct: 58  ELRLYGINAIQAVFKARPQALRKIYLTEARIPQFKALLAWCVAQRLGYRVVEEADLTKLA 117

Query: 106 GKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                H+G+  E   +    L        +   L + LD V +PHN GAILRS+  F   
Sbjct: 118 SST-HHEGIVAEVLRVPPQPLQDWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVA 176

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++     +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +
Sbjct: 177 GLLLPAGSTLGLSGTAARVAEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQDV 236

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                  ++  ++GAE +G+  +          +H  G++++LNV++A AV 
Sbjct: 237 FATALPQRLVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVF 288


>gi|283955409|ref|ZP_06372908.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793169|gb|EFC31939.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 227

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L     +I +L   K    +  +   +     +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILEYHKDRINELYLAKECD-KATFSKIVKSGLKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L+ ++ S  +++L  ++D  NIGAI R+A A     +I     
Sbjct: 59  GNHQGFLLDIKEGSFANLNEIKKSDFIVMLYGISDVGNIGAIARTAYALGVGALIFIGEK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K
Sbjct: 119 LAMEG--VIRTSSGAALDLPIVISNDALSVINELKQIGFYFYASDGSGKEIHNVKINNGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLVLGSEGFGLSSKIAKKCDECVGITMKNNFDSLNVSAAFAILC 221


>gi|168238343|ref|ZP_02663401.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735064|ref|YP_002115660.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|204929676|ref|ZP_03220750.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194710566|gb|ACF89787.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288803|gb|EDY28176.1| RNA methyltransferase, TrmH family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|204321395|gb|EDZ06595.1| RNA methyltransferase, TrmH family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322613365|gb|EFY10307.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620431|gb|EFY17296.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625101|gb|EFY21930.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629455|gb|EFY26231.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633842|gb|EFY30581.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635448|gb|EFY32159.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639876|gb|EFY36555.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644238|gb|EFY40782.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649930|gb|EFY46350.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654887|gb|EFY51204.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658185|gb|EFY54451.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661743|gb|EFY57961.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669724|gb|EFY65870.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673269|gb|EFY69374.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674942|gb|EFY71029.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682965|gb|EFY78983.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685626|gb|EFY81621.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323191946|gb|EFZ77184.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200421|gb|EFZ85502.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201320|gb|EFZ86387.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208391|gb|EFZ93331.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211534|gb|EFZ96372.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215965|gb|EGA00697.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221746|gb|EGA06154.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225646|gb|EGA09873.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229364|gb|EGA13488.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235321|gb|EGA19405.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237493|gb|EGA21556.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245248|gb|EGA29249.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246473|gb|EGA30454.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253996|gb|EGA37818.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259046|gb|EGA42694.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261969|gb|EGA45534.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267752|gb|EGA51233.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269689|gb|EGA53141.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 345

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSD 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             + L      +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  
Sbjct: 279 RGQALFSTTLPEKMVLVLGREYDFLPEAAREPGDLCVKINGTGNVESLNVSVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|300772566|ref|ZP_07082436.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760869|gb|EFK57695.1| TrmH family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 249

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 92/237 (38%), Gaps = 11/237 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q  +   Q     + G+ +V+  L++    +  L  T N   ++     +PH      + 
Sbjct: 14  QHKKFRKQHGLFVVEGIKSVTEFLSSAY-DVHALFYTANVTTKV---VKIPHNIKSYELT 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156
                KI   ++  QG+          T + +   +Q  +VLD V DP N+G I+R+A  
Sbjct: 70  DNEFSKISQLKS-PQGILALVRLPKEKTPEQLDFANQFTLVLDDVQDPGNLGTIIRTAEW 128

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F    I+ +     + +  + ++  G+L        ++L   ++ +        G   D 
Sbjct: 129 FGFKHIVCSAGTVDAYNPKVVQATMGSLSRTQIHY-TDLESFIRTVR---LPVFGALLDG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               E     + + +++G EG G+  K  +       +   G  ++LNV+ A  +  
Sbjct: 185 TSIYETRWGKEGL-ILMGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIFC 240


>gi|90412684|ref|ZP_01220685.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
 gi|90326259|gb|EAS42678.1| putative tRNA methyltransferase [Photobacterium profundum 3TCK]
          Length = 234

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A     +       P E+  VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV---HAVWPKENMRVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N+ DA+  + + G Q +  + SD+             A+I G E  G+  +  
Sbjct: 71  VELDTHDNMVDAITHLKAQGMQVLATNLSDTAIDFRDVDYTKPTAIIFGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 AMADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|300811210|ref|ZP_07091718.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497810|gb|EFK32824.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 291

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 120/295 (40%), Gaps = 24/295 (8%)

Query: 1   MNLISKKKSE-KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D       +   DY + Q F+    +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRL----KLFTDYNEAQLFHY---YEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLL---ATKNALARLDWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQ 112
           A+      I  L+   A +  LA  D +    H     FP+       + ++ G   +  
Sbjct: 54  AIRAGYEPIAMLVEGKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRQLPGYNLLRG 113

Query: 113 GLALETA---PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            +        P L     A+     + VL+ V +P N+GAI RSA A   DG++ T   S
Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173

Query: 170 PSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK 225
                   + + G +  +P+  +         +  +   GF+T  ++  D+   ++  + 
Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVL 233

Query: 226 N--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              D++A+ILG+EG GL P+T   +     + M   + +LNV+ A+A+A +  + 
Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288


>gi|86153786|ref|ZP_01071989.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613667|ref|YP_999878.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004845|ref|ZP_02270603.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85842747|gb|EAQ59959.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87250040|gb|EAQ72998.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 227

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    ++ +       F +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I     
Sbjct: 59  GNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K
Sbjct: 119 LAMEG--VIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKINNGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|320534170|ref|ZP_08034700.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133606|gb|EFW26024.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 278

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 104/261 (39%), Gaps = 23/261 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     + R  +Q           ++ A+         L+A ++        A+  
Sbjct: 15  DYTRLTDVALRRRLETQRGLYMAESSKVITRAVAAGHAPRSFLMAPRHLAEMRPVIASAA 74

Query: 89  H--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQL 134
                      PV   P + ++ I G       LA    P L    + +        ++ 
Sbjct: 75  GCGGNDDGGEVPVFVAPEEVLESITGFHLHRGALAAMNRPELIGVSELLSAARGGAGARR 134

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L+ + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI  
Sbjct: 135 VAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIER 194

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQE 246
              A+ ++H  GF    L+ SD+   L++   +        ++A++LG EG GL  +T  
Sbjct: 195 WP-AMDELHGQGFTVAALALSDTSVALDEFAASTACTGADSRVAVVLGTEGDGLSHRTIA 253

Query: 247 TATSMAHLHMPGIIKALNVSN 267
            A  +  + M G + +LNV+ 
Sbjct: 254 AADEVVRIPMAGGVDSLNVAA 274


>gi|319898475|ref|YP_004158568.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           clarridgeiae 73]
 gi|319402439|emb|CBI75980.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           clarridgeiae 73]
          Length = 271

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 115/275 (41%), Gaps = 19/275 (6%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I ++ +++  +L   +R+ ++     ++             G   +SA L++       L
Sbjct: 5   ITTIHEANDPRL-EAYRNIREKDLVGRQ-------HQFIAEGKVILSALLHSKEFSAVSL 56

Query: 72  LATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTL 126
           L     L  +        P  P+  VP + +D I G   VH+G+      +  P L   L
Sbjct: 57  LVVAARLLGIMPILKETKPTCPIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPSLKEFL 115

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +    L+ VL  +++  N+GAI R+A AF+  GII  K           + ++GA  +
Sbjct: 116 QNLPEKALIPVLCGISNHDNMGAIFRNAAAFASTGIIVDKTSCDPLYRKSIRVSAGAALN 175

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +PY +  ++   +  + +  F    LS  + + L+        ALI G EG GL     +
Sbjct: 176 VPYTQGDDIDSIITALSNADFHLYALSPSAPRYLKDTKAIKHTALIFGTEGNGLPAHVLQ 235

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +     + M     ++NV+ A+ +AL     HFA
Sbjct: 236 KS-ETLRIPMAYGFDSINVATASGLAL----AHFA 265


>gi|170692157|ref|ZP_02883320.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
 gi|170142587|gb|EDT10752.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia graminis C4D1M]
          Length = 262

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 9/247 (3%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  SA L+   +    +  T+ AL 
Sbjct: 2   KAITSRDNPLYKRLKALAGSTHQQRRSGHALLEGFHLASAYLDVAGQPEMCI-VTEGALR 60

Query: 80  RLDWDANLPHPFPVKTVP-PQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMV 137
             +  A +      + V  P  +   +    VH  G+ L    L +P  D V  +   +V
Sbjct: 61  HDEAQAIVSRIDEQRIVTLPDALFGQLS-NVVHGVGMLLLVEKLDTPLPDTVAQT--CIV 117

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD V D  N+G+ILRSA A     +      + + S+ + +S  GA   +          
Sbjct: 118 LDGVQDAGNVGSILRSAAAAGIQQVFCAPGTAYAWSSKVLRSGMGAHFLLQIHEDVEAQT 177

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            ++++       +   S   + +     + ++A + G EG G+    ++  T    +  P
Sbjct: 178 LIERLA---VPVVITDSHGAEAIYDCDLSAELAWVFGNEGAGVSQAWRDAVTLRVTIPQP 234

Query: 258 GIIKALN 264
           G +++LN
Sbjct: 235 GGMESLN 241


>gi|325674243|ref|ZP_08153932.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325554923|gb|EGD24596.1| SpoU family rRNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 266

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TV 96
           +     +     + G + V+ AL      + +L  T+ A  R            V+   V
Sbjct: 19  RGAERRKTGRFLVEGENAVAEALIAG--LVHELFFTEQAAERYPHLIERAVADGVRGSLV 76

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAV 155
             + I  +        G+      L  P   AV   ++LL V   + +P N G ++R A 
Sbjct: 77  TDRAIRALSDTVTPP-GVVAVCDLLDVPLATAVTSRTRLLAVPVAIGEPGNAGTVIRVAD 135

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           A   D  I         +    +S++G+L HIP +R  N+   L  + S G Q +  ++D
Sbjct: 136 AVGADAAILAGDSVDPHNGKCVRSSAGSLFHIPIVRERNVDAVLDALTSAGIQILATAAD 195

Query: 216 SKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  L++         A + G E  GL       A     + + G  ++LN++ AA++ L
Sbjct: 196 GEVDLDEADDLLARPTAWLFGNEAHGLDAAVARRADHRVRIPIRGRAESLNLATAASICL 255

Query: 274 YITQN 278
           Y +  
Sbjct: 256 YASAR 260


>gi|116513973|ref|YP_812879.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093288|gb|ABJ58441.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 291

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 120/296 (40%), Gaps = 26/296 (8%)

Query: 1   MNLISKKKSE-KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D       +   DY + Q F+    +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRL----KLFTDYNEAQLFHY---YEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLLATKNALAR--LDWDANLPH------PFPVKTVPPQTIDKIVGKEAVH 111
           A+      I  +L  + AL R   D+D  L         FP+       + ++ G   + 
Sbjct: 54  AIRAGYEPI-AMLVEEKALERDLADFDRELAANDDHLLDFPIFVAQSDLLRQLPGYNLLR 112

Query: 112 QGLALETA---PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             +        P L     A+     + VL+ V +P N+GAI RSA A   DG++ T   
Sbjct: 113 GAICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDS 172

Query: 169 SPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI 224
           S        + + G +  +P+  +         +  +   GF+T  ++  D+   ++   
Sbjct: 173 SDPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPA 232

Query: 225 KN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               D++A+ILG+EG GL P+T   +     + M   + +LNV+ A+A+A +  + 
Sbjct: 233 LKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288


>gi|116624472|ref|YP_826628.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227634|gb|ABJ86343.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 276

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 11/230 (4%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTV--PPQTIDKIVGKEAVHQ 112
           H +  AL++    +  +LA+++A   LD  +      P+K V  P      I G E   Q
Sbjct: 52  HLLEEALHSQCE-VKTVLASESA---LDGASAHLRSLPLKLVSLPDALFAGIAGTETT-Q 106

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G+     P         +   L++VLD + DP N G I+R+A AF   G++  K      
Sbjct: 107 GVIALVQPPAWKLEQLFQRPALVVVLDGLQDPGNAGTIVRAAEAFGATGVVFLKGAVSPY 166

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIA 230
           +    ++++G+L  +P++   +   A   +     +      +  S + L          
Sbjct: 167 NPKTLRASAGSLFRVPFLHGVDAAVACTALAQHQVELFAGVPAGASSRTLAAVDLARPCG 226

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L++G E  G+    +  A     +   G +++LN + AA++ LY  +   
Sbjct: 227 LVIGNEAHGVSRGLRAAA-HDVSIPTVG-VESLNAAMAASILLYEARRQR 274


>gi|308231660|ref|ZP_07413343.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308378747|ref|ZP_07483775.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308379893|ref|ZP_07488012.2| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308216360|gb|EFO75759.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308359254|gb|EFP48105.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308363164|gb|EFP52015.1| rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
          Length = 230

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 5/214 (2%)

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
             L  T   LA L  D       P        + +++G       LA             
Sbjct: 9   LALFGTDRRLAELKDDLA-GVGAPYYRASADVMARVIGFHLNRGVLAAAGRVPEPSVAQV 67

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V  ++ + VL+ VND  N+G+I R+A   S D ++     +        + + G    +P
Sbjct: 68  VAGARTVAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVP 127

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIK---NDKIALILGAEGKGLRPKT 244
           Y R ++    L  +   GF+ + ++       L + I    +++IAL++GAEG GL    
Sbjct: 128 YARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHERIALLVGAEGPGLTAAA 187

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +     + M     +LNV+ AAA+A Y    
Sbjct: 188 LRISDVRVRIPMSRGTDSLNVATAAALAFYERTR 221


>gi|297571531|ref|YP_003697305.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931878|gb|ADH92686.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 298

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 105/284 (36%), Gaps = 40/284 (14%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPH 89
           KK     ++ +   Q E   + G   V  AL    R I  +  T+ AL R  D DA L  
Sbjct: 14  KKATGLYRR-KMRVQYEQAIVEGPQGVREALLCYERGIRDVYVTQEALERHPDIDALLRR 72

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMV-LDHVNDPHNI 147
             P   + P  +   V   +  QG+    A P      D   + +L++  L+ V DP N+
Sbjct: 73  VDPYTHILPNELCSSVAPNS--QGIFAVIAIPDEEDIRDIFAHGKLVVCALESV-DPGNV 129

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A A   D +I  +    + +  + +S++G+  HIP +   ++ D +      GF
Sbjct: 130 GTIIRCADACGADAVILGRGSVEATNPKVMRSSAGSYFHIPILEDEDVADVVAHAREAGF 189

Query: 208 QTIGLSSDSKKPLEQ---------------------------------EIKNDKIALILG 234
           Q +      +  L Q                                          ++G
Sbjct: 190 QILIADGRGEYDLGQLADQALLESEGAQCGAAAQAGSAESAAEPGSAAIDLRRPTLWMVG 249

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E  G   +    A  +  + M G  ++LNV+ A ++ L+ +  
Sbjct: 250 NEAHGFTDEQYGYADGLVRIPMWGASESLNVAMATSICLFSSAR 293


>gi|282864273|ref|ZP_06273329.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282560760|gb|EFB66306.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 279

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 12/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLDWDANLPH--PFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R        H     V     
Sbjct: 28  KERRFIAEGPQAVREAAAHRGSDGTSTLTELFATVEAADRYADIVGAAHAAGARVHLADA 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAF 157
             +   V +    QGL      L SP  + +     L+ VL HV DP N G +LR A A 
Sbjct: 88  DVLAD-VSQTVTPQGLIGVCRFLDSPFEEILAAKPTLVAVLAHVRDPGNAGTVLRCADAA 146

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++ T       +    +++ G+L H+P      +  A+Q +   G + +       
Sbjct: 147 GADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEQAVQGLRGAGVRILAADGAGT 206

Query: 218 KPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+ E+         A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV L
Sbjct: 207 DDLDDELDAGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCL 266

Query: 274 YITQN 278
           Y +  
Sbjct: 267 YASAR 271


>gi|110634557|ref|YP_674765.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110285541|gb|ABG63600.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 266

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 112/259 (43%), Gaps = 9/259 (3%)

Query: 23  LRRNHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALAR 80
           +R +  D  ++ S+   + R     +  F+     V   L + SR     +L  +N +A 
Sbjct: 6   IRIDSPDDPRIASYRDIRERDLIGRQGRFVAEGKVVLNVLFSTSRFSAESVLLLENRVAG 65

Query: 81  LDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LL 135
           ++   A +P   P+       +D I G   +H+G+          + D +  +     L+
Sbjct: 66  MEELLARIPEHVPLYVAGSAVMDAIAGFH-MHRGVLAIGLRGEEDSADELITAPPARALV 124

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L  + +  N+GAI R+A AF  D I+              + + GA+  +P+ R  + 
Sbjct: 125 VALSGIANHDNMGAIFRNAAAFGADAILLDSHCCDPLYRKAIRVSVGAVLKVPFARGGDA 184

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +  ++ + + GF  + LS   ++ +E   +  + A++LGAEG GL             + 
Sbjct: 185 STLIETLTARGFDILALSPSGEREIETVKRAPRTAVLLGAEGPGLPAALLARL-PSVRIP 243

Query: 256 MPGIIKALNVSNAAAVALY 274
           M     +LNV+ A A+AL+
Sbjct: 244 MRNDFDSLNVAAATAIALH 262


>gi|312868681|ref|ZP_07728874.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
 gi|311095795|gb|EFQ54046.1| RNA methyltransferase, TrmH family [Lactobacillus oris PB013-T2-3]
          Length = 289

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 109/269 (40%), Gaps = 20/269 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP- 88
           Y ++          +Q           +  AL    +    LL  +  L R   D +   
Sbjct: 18  YVRLTEAQLFHAKGTQDGLFIAESPKVIERALRAGYQP-ASLLVEEKVLDRDLADLDHEM 76

Query: 89  --------HPFPVKTVPPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNS-QLLM 136
                      P+  +  Q I ++ G   +   LA       P L+    ++ N    + 
Sbjct: 77  TMNQTEGLGQTPIYVINDQQIRQLAGYNLLRGALAAMYRVQRPNLASLFKSIPNPHPRIA 136

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--- 193
           +L+ V +P NIGAI RSA A   DG+I T   +       ++ + G +  IP+  I    
Sbjct: 137 ILERVVNPANIGAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQIPWTYIDAKT 196

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATS 250
              + +  +H +G+QT  ++   +   ++       DK+A+ILG+EG GL  +T   +  
Sbjct: 197 WHMEGIDLLHRFGYQTAAMALRHNTIRIDDPRLAKLDKLAIILGSEGPGLEEQTITQSDF 256

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   + +LNV+ A+A+A +   N 
Sbjct: 257 TIKIPMAVGVDSLNVAAASALAFWELGNR 285


>gi|208434474|ref|YP_002266140.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
 gi|208432403|gb|ACI27274.1| 23S rRNA methyltransferase [Helicobacter pylori G27]
          Length = 218

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 4/217 (1%)

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           V   LN+   K+ ++  +K    +  +      P  +K V  +    +  K   HQG+  
Sbjct: 2   VMHILNSYQEKLQEIYLSKEIDKKFFFALKKACPNIIK-VDNKKAQSLA-KGGNHQGVLA 59

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           +    L+ +L  V+ +Q L+VL  + D  NIG I RSA     DG+I       +   ++
Sbjct: 60  KVELPLAASLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKELAYEGIV 119

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            +S+ G +  +P+  +SN  D + ++ + GF  +G S      +E      K AL LG+E
Sbjct: 120 -RSSLGLMYDLPFSVMSNTLDLINELKTSGFLCLGASMQGSSQVENLSL-KKCALFLGSE 177

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +GL  K      ++  + M     +LNVS AA + +
Sbjct: 178 HEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 214


>gi|255690837|ref|ZP_05414512.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
 gi|260623577|gb|EEX46448.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
          Length = 267

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKI 104
                +     +  AL      +  L   K+ +    D      +  PV T   + + K+
Sbjct: 33  KGLFIVESPKVIKRALEAGYEPLAILCEHKHIIGDASDVIERYSNDLPVYTGSRELLSKL 92

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
            G       L     P+L    +    ++ ++V+D V D  NIGAI RSA A   D ++ 
Sbjct: 93  TGYVLTRGVLCAMHRPILRRVEEICHEARRIVVIDGVVDATNIGAIFRSAAALGMDAVLL 152

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE 223
            +      +    + + GA+  IP+  +     +L  + + GF+T  ++  D+   ++  
Sbjct: 153 RRNSCDPLNRRAVRVSMGAVFCIPWTWMD---GSLSDLSNLGFRTAAMALTDNSVSIDDP 209

Query: 224 IK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           I     K+A+++G+EG GL  +T   A  +  + M   + +LN
Sbjct: 210 ILMAESKLAIVVGSEGDGLAHETIAEADYVVRIPMSYGVDSLN 252


>gi|297182196|gb|ADI18367.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
          Length = 260

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 3/249 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   ++M+   +   +        + G   V+AAL+   R++ Q++   +A        
Sbjct: 8   RNPRIQRMRRLLRDRGYRYDEAAYVVEGPALVAAALD-AGRQVRQVVVPASASDHHVMHR 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                     VP    + +    +  Q    E A      +D    +  L+VL  V+DP 
Sbjct: 67  AGWSGAATLVVPDGVFEGLSSTRS-PQPALAEVAFHDVEPMDLATTTGPLLVLAEVSDPG 125

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ++RSA AF   G++         +  L ++A+G+   +P+  + +   AL+ +   
Sbjct: 126 NAGTLMRSAEAFGATGVVVAGG-VDPYNPKLVRAAAGSSFRVPFAVVDDPMAALRILEEA 184

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G+              +   +  +A+ILG E  GL  +          +   G +++LNV
Sbjct: 185 GYGCWATVPRGGLSPAEVPSDGPVAIILGNEPHGLSDEVVAACVGTVSVPTVGGVESLNV 244

Query: 266 SNAAAVALY 274
           + A ++AL+
Sbjct: 245 AIAGSIALH 253


>gi|215404054|ref|ZP_03416235.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
 gi|289745918|ref|ZP_06505296.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
 gi|289686446|gb|EFD53934.1| 23S rRNA methyltransferase tsnR [Mycobacterium tuberculosis
           02_1987]
          Length = 259

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 94/243 (38%), Gaps = 8/243 (3%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
             +       G + V+AAL      + ++  T+ A  R +      H   V  V  +   
Sbjct: 21  RRRAGRFLAEGPNLVAAALARG--LVREVFVTEVAARRHELLLA-AHEASVHLVT-ERAA 76

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           K +       GL        +   D +  S  L+ V   + +P N G ++R A A     
Sbjct: 77  KALSDTVTPAGLVAVCDLPATRLEDVLAGSPQLIAVTVEIREPGNAGTVIRIADAMGA-A 135

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +   +           ++++G++  IP +   ++  A+  + + G Q +  + D +  L+
Sbjct: 136 VADHRVGDHPLGGKCLRASTGSIFAIPVVVAPDVGAAIADLRAAGLQVLATAVDGEMALD 195

Query: 222 QEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +  A + G E  GL  +    A    H+ M G  ++LNV+ AAA+ LY +   
Sbjct: 196 DADRLLAEPTAWLFGPEAHGLSAEIAALADHRVHIPMSGGAESLNVAAAAAICLYESARA 255

Query: 280 FAK 282
             +
Sbjct: 256 LGR 258


>gi|188586434|ref|YP_001917979.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351121|gb|ACB85391.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 269

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 91/238 (38%), Gaps = 16/238 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTIDKIVGK 107
           L G   +  AL++  +  F L +    +   + D  L       P  +V P    K    
Sbjct: 30  LEGSLLIKEALHSGVKFDFVLYSADQEVINANEDLLLEIHNQQIPAYSVDPSLFQK-TAF 88

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
               QG+                  + +++L  V DP N+G ++RSA AF   G++ +K 
Sbjct: 89  TETPQGILAVCTFNEGDLESLTSEKKDILILYQVQDPGNMGTLIRSADAFGFQGVVCSKG 148

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-N 226
                +  + +S+ G+L HIP +  S +    Q +    +  +       KP+      N
Sbjct: 149 CVDPTNDKVVRSSMGSLFHIPVVMNSEIDQLFQVLQREQYFILFGDKSGSKPIMTIDLSN 208

Query: 227 DKIALILGAEGKGLRPK--------TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +AL +G E +GL+           +        + M G  ++LN   A ++ +Y  
Sbjct: 209 TAVALFVGNESRGLQDLNFDQKFNQVR---HQKVEIPMFGKAESLNAGIAGSIMMYEL 263


>gi|46200169|ref|YP_005836.1| tRNA (guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55980096|ref|YP_143393.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
 gi|48425869|pdb|1V2X|A Chain A, Trmh
 gi|11079208|dbj|BAB17605.1| tRNA (Gm18) methyltransferase [Thermus thermophilus]
 gi|46197797|gb|AAS82209.1| tRNA (Guanosine-2'-O-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|55771509|dbj|BAD69950.1| tRNA (guanosine-2'-O-) methyltransferase [Thermus thermophilus HB8]
          Length = 194

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 9/157 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---AVLAKSASGALEH 186
           R   L ++L++V+ PHN+ AILR+  A         + ++ + +       +++ G+ + 
Sbjct: 19  RQPDLTVLLENVHKPHNLSAILRTCDAVGV-----LEAHAVNPTGGVPTFNETSGGSHKW 73

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      +L +A + +   GF     +  +  +   +       A++ GAE  G+  +  
Sbjct: 74  VYLRVHPDLHEAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEAL 133

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A     + M G++++LNVS AAAV L+  Q    K
Sbjct: 134 ALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLK 170


>gi|257068745|ref|YP_003155000.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256559563|gb|ACU85410.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 275

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 17/271 (6%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +   +  +I  + D     L     DY +M     +SR   +           +S A++ 
Sbjct: 1   METPQRRQITEITDLADPALD----DYLRMTDVRLRSRVEVERGLFMAESFEVISRAMDA 56

Query: 64  P--SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE---- 117
               R     L ++  LA+           PV       ++++ G   +H+G        
Sbjct: 57  GMAPRSF---LMSEKWLAKFAPLYEQFPEVPVFVGAEPLLEQLTGFH-LHRGALAAMQRP 112

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P +   L A      + VL+++ D  N+GA  RSA A   D ++ T + +        
Sbjct: 113 VLPAVEELLAATGGRSRIAVLENLVDHTNVGACFRSAAAMGVDAVLVTPQCADPLYRRSI 172

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKND--KIALILG 234
           + + G +  +P+ RI N   ++  +   G+   GL+  +    L+     D   +AL+LG
Sbjct: 173 RVSMGTVFQVPWTRIENWPASVHDLQEAGYVVAGLTLGEGAITLDDLAAEDHENLALVLG 232

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           +EG GL   T         + M   + +LNV
Sbjct: 233 SEGHGLMGSTDRALDRRVTIPMQHGVDSLNV 263


>gi|157414470|ref|YP_001481726.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385434|gb|ABV51749.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747114|gb|ADN90384.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931966|gb|EFV10919.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 227

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    +  +       F +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILEYHKDCINELYLAKECD-KTTFSKIAKSGFKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I     
Sbjct: 59  GNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K
Sbjct: 119 LAMEG--VIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|281343848|gb|EFB19432.1| hypothetical protein PANDA_012560 [Ailuropoda melanoleuca]
          Length = 366

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 31/220 (14%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMV 137
           A      PV     Q +D +   + VHQG+ +E +PL       V  ++       L +V
Sbjct: 98  AAEARDIPVLRPRRQKLDALCRSQ-VHQGVCMEVSPLKPRPWTEVGEARPGDDPQQLWLV 156

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRY--------SPSESAVLAKSASGALEHIPY 189
           L+ + DP N+GA+LRSA     D IIT+ R         +   + V++K+++GA+E +  
Sbjct: 157 LERIQDPRNLGALLRSAHFLGVDKIITSGRNRHGRPLVPTCPLTPVVSKASAGAMEVMDV 216

Query: 190 IRISNLTDALQKMHSWGFQTIGL--------SSDSKKPLE---QEIKNDKIALILGAEGK 238
               +L   LQ     G+   G         S  S+ P+    + + +    L+LG EG 
Sbjct: 217 FSTDDLAGFLQAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGS 276

Query: 239 GLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVALY 274
           GL    Q +   +  +     +P  +++LNVS AA + L+
Sbjct: 277 GLSQAVQASCQLLLTILPGRQLPPGLESLNVSVAAGILLH 316


>gi|17555908|ref|NP_499333.1| hypothetical protein Y45F3A.9 [Caenorhabditis elegans]
 gi|3881022|emb|CAA21494.1| C. elegans protein Y45F3A.9, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 294

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/279 (22%), Positives = 115/279 (41%), Gaps = 27/279 (9%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           R+     K  + +  K     + +   L+G+H+V  A+ +  R    +   K    R D 
Sbjct: 18  RKAKMARKSAEKYVAKKIQVPELQGEALFGLHSVLEAIRSGKRDFHSVFLKKAVENRADS 77

Query: 84  DANLPH--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           DA +                +    +D++   + +H G+ ++ + L     +      + 
Sbjct: 78  DARIKEILSRIDELGIQKTLLTDDQLDRLTEFQ-LHNGICMDASALQFSNFE---PKTVS 133

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISN 194
           + +D V DP N+GAI RSA  F  DG+   K   P S +  + KS+ GALEH+P  +  N
Sbjct: 134 IFVDKVLDPGNLGAIGRSAWYFGADGLGLVKGRGPKSITPAMIKSSCGALEHLPVQQFLN 193

Query: 195 LTDALQKMHSWGFQTIGL--------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +   K+ + G + +          +  S K L+Q      + ++LG EG G+      
Sbjct: 194 FNEFRDKIKAAGGELVATCDPGAAEKAGISAKSLDQWTPEKPVGIVLGDEGVGISRGILN 253

Query: 247 TATSMAHL-HMP---GIIKALNVSNAAAVALYI--TQNH 279
              ++  +  +      + +LNVS  A + L+    QN 
Sbjct: 254 LCDTVISISPVRKDGSNVTSLNVSVVAGILLHHISLQNR 292


>gi|220912252|ref|YP_002487561.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219859130|gb|ACL39472.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 297

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 102/297 (34%), Gaps = 35/297 (11%)

Query: 11  KIFSLKDSHYAKLRRNH-RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK-- 67
           K    +DS  +  R +  RD  K+     + +      +    G  +V  AL     +  
Sbjct: 3   KTGRPQDSPLSNPRADRVRDVAKLAGRPARLKR----GHFLAEGPQSVREALRLHQERLA 58

Query: 68  ------IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                 +  + A++  L R      L           + +  +       QG+       
Sbjct: 59  AGSPGVVTDVYASEACLDRFPEFEELAEGTNAWLATDEVLAAMADT-VNPQGIIA-VCRF 116

Query: 122 LSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           +  +L++V     +L+ VL  V DP N G +LR+A +   D ++ T       +    +S
Sbjct: 117 VDVSLESVLDAGPRLIAVLCQVRDPGNAGTVLRAADSAGADAVVLTGSSVDIYNPKAVRS 176

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE------------------ 221
            +G+L H+P +  + +    +   S G   +         L+                  
Sbjct: 177 TAGSLFHLPVVLGAEVAHLAEACKSRGIGILAADGYGSLNLDALQDENARRRLTGSGPDS 236

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   A + G E +GL     E A     + + G  ++LN+  AA V LY +  
Sbjct: 237 AYDLGGPTAWLFGNEAQGLSEAELELADHRVAVPVYGAAESLNLGTAATVCLYASAR 293


>gi|170076759|ref|YP_001733397.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884428|gb|ACA98141.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 219

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 2/155 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188
           R   L ++++ V+ PHNI AI+R+  A     +    + +        ++ A G+ + + 
Sbjct: 16  RQPDLTVLMEDVHKPHNISAIIRTCDAVGVMAVHAMNQVADGDVLDTYSQVAQGSEKWVD 75

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             R  ++T A+ ++H   F+      SD              A+++GAE  G+     E 
Sbjct: 76  LNRHPDVTVAIDQLHQQNFKIYAAHLSDRAVDYRTIDYTQPTAILMGAERWGVSDTAAEL 135

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + M G++++LNVS AAAV L+  Q    +
Sbjct: 136 VDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQRLQ 170


>gi|104773970|ref|YP_618950.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423051|emb|CAI97747.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|325125661|gb|ADY84991.1| Putative rRNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 291

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 120/296 (40%), Gaps = 26/296 (8%)

Query: 1   MNLISKKKSE-KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D       +   DY + Q F+    +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRL----KLFTDYNEAQLFHY---YEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLLATKNALAR--LDWDANLPH------PFPVKTVPPQTIDKIVGKEAVH 111
           A+      I  +L  + AL R   D+D  L         FP+       + ++ G   + 
Sbjct: 54  AIRAGYEPI-AMLVEEKALERDLADFDRELAANDDHLLDFPIFVAQSDLLRQLPGYNLLR 112

Query: 112 QGLALETA---PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             +        P L     A+     + VL+ V +P N+GAI RSA A   DG++ T   
Sbjct: 113 GAICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDS 172

Query: 169 SPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI 224
           S        + + G +  +P+  +         +  +   GF+T  ++  D+   ++   
Sbjct: 173 SDPLYRRSGRVSMGTVFQVPWTYLDRKLWREKGVASLQELGFKTAAMALRDNTVDIDDPA 232

Query: 225 KN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               D++A+ILG+EG GL P+T   +     + M   + +LNV+ A+A+A +  + 
Sbjct: 233 LKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVDSLNVAAASALAFWEVKK 288


>gi|254419713|ref|ZP_05033437.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185890|gb|EDX80866.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 270

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 108/257 (42%), Gaps = 10/257 (3%)

Query: 26  NHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKIF--QLLATKNALARL- 81
           N  D  ++  F   + R  +  E LF+     V   L + + +     LL T+  +A L 
Sbjct: 7   NDPDDARISGFRDIRERDLTGREGLFVAEGEVVVRVLASTASRCRPRALLLTEKRVAALS 66

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAVRNSQLLMV 137
           D  A L    PV       +D+I G   +H+G+        AP +   L AV +  + ++
Sbjct: 67  DVIAALAPSVPVYVAGQTVLDRIAGF-PLHRGILALGEKPVAPPVEHLLAAVADEDVFVI 125

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
              + +  N+G + R+A AF    ++  +           + + GA+   P+    +  D
Sbjct: 126 ASGIGNHDNMGGVFRNAAAFGARAVLLDETCCDPFYRKAIRVSVGAVLRSPFTVGGSAED 185

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +  M + G + + L+  +   L        +AL++G+EG GL     +       + M 
Sbjct: 186 LVAAMQTAGVEVLALTPSATLRLADYRPQGPVALMVGSEGPGLPRVVIDRC-RAVGVPMA 244

Query: 258 GIIKALNVSNAAAVALY 274
           G   +LNV+  +A+AL+
Sbjct: 245 GGFDSLNVAVTSALALH 261


>gi|45644682|gb|AAS73070.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
           EBAC20E09]
          Length = 238

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 12/236 (5%)

Query: 52  YGVHTVSAALNNPSRKIFQLLA-TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           YG H++ + +NN    I +L   +     R+    +L   F +K      + K    EA 
Sbjct: 9   YGFHSIESIINNNPHTIKKLFIPSSRDDKRIHQLISLAEKFEIKYEISNKLKK--DPEA- 65

Query: 111 HQGLALETA----PLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
              +   +       L   ++   N  L +++LD++ DP N+G+ +RSA  +  D +I  
Sbjct: 66  ---IVANSETGSLKDLKVFIEDSSNLNLSILILDNIIDPRNLGSCIRSAAVYEIDALIIN 122

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
           K +    + V    ++G  E I    +SNL + L+ +        GLS  ++K       
Sbjct: 123 KHHCAPLNEVAHNVSAGGAELINIFYVSNLINCLKYLRKSNIDIYGLSEHAQKIYTSCDF 182

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  A+ILG+E  G+R KT E+   +  L++    K+ NVS A  + L        
Sbjct: 183 TNSSAIILGSEESGMRQKTSESCDELIKLNLNKKFKSFNVSVATGIILSEISRQRG 238


>gi|302530537|ref|ZP_07282879.1| RNA methyltransferase [Streptomyces sp. AA4]
 gi|302439432|gb|EFL11248.1| RNA methyltransferase [Streptomyces sp. AA4]
          Length = 276

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 5/251 (1%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ + + +++         +   G   V   L +    +  LL  +  L  L+ D    
Sbjct: 20  DFRDLSTADRRPDRPGGRGLVIAEGTVVVGRLLASRY-PVRALLGVERRLRELE-DELAG 77

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              P      +T+  +VG       LA+   P        V  +Q+L VL+ V D  N+G
Sbjct: 78  VDVPAYVTSAETMADVVGFHLNRGVLAVADRPEPPTVSQIVDGTQVLAVLEGVGDHENLG 137

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ R+A A    G++     S        + + G +  +P+    +    L  + + GF 
Sbjct: 138 ALFRNAAALGVGGVLLGPGCSDPLYRRSVRVSMGHVLRVPFATFDSWPGGLDVLRARGFT 197

Query: 209 TIGLSSDSKK-PLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              L+  +   PL   +E     IAL+LGAEG GL  +  E A     + M   + +LNV
Sbjct: 198 VAALTPRADSVPLRGLREKVPGPIALLLGAEGPGLTDEAIEAADVAVRVEMVSGVDSLNV 257

Query: 266 SNAAAVALYIT 276
           + AAA+A +  
Sbjct: 258 ATAAAIAFHEV 268


>gi|238797645|ref|ZP_04641141.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
           43969]
 gi|238718509|gb|EEQ10329.1| tRNA guanosine-2'-O-methyltransferase [Yersinia mollaretii ATCC
           43969]
          Length = 233

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A R   L + L+ V+ PHN+ AI+R+A A     +       PS E      +A+G+   
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQV---HAIWPSTEMYTRLSAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++TDA+  + S G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHPHITDAIAHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|297622073|ref|YP_003710210.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297377374|gb|ADI39204.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 243

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 107/252 (42%), Gaps = 16/252 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            H   K++ +  ++ +   Q  ++ + G   V        R +  LL T         + 
Sbjct: 8   QHPLIKRLTALRKERKMRQQEGSVVIEGKKLVRE----NVRLVRTLLTTS-----PSTEF 58

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +LP    V  V P+ I KI G ++  +G+  E      P+       Q L+VL+++NDP 
Sbjct: 59  SLPESAEVYAVSPEMIQKISGVKS-PEGVLAEVK---MPSFKLPARLQRLLVLENLNDPG 114

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+++AF  DG+          +    +++ GA+  +P + + +L      +   
Sbjct: 115 NLGTLIRTSLAFGWDGVFLLGNCCDPFNDKAIRASKGAIFKLPIV-VGDLESLKTLLIDH 173

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                    + KK +    K  K+AL+LG+E  G   +          + +   + +LNV
Sbjct: 174 QMSVFIADLEGKK-IGAIPKVSKMALVLGSEAHGPSKEVISIG-ERLTIPISSGLDSLNV 231

Query: 266 SNAAAVALYITQ 277
           + A  + L+  Q
Sbjct: 232 AVAGGILLHHFQ 243


>gi|227823292|ref|YP_002827264.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
 gi|227342293|gb|ACP26511.1| putative rRNA methylase [Sinorhizobium fredii NGR234]
          Length = 276

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 105/250 (42%), Gaps = 12/250 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSR-----KIFQLLATKNALARL-DWDANLPHPFP 92
           K R  +  +  F+     V   L    R         +L  +N LA L +  A  P   P
Sbjct: 24  KERDLTGRQGRFIAEGTVVLRLLAAAHRAGRGITAEAILLLENRLAGLAELLAEFPADVP 83

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           V     +  D I G   +H+G+      +  P     + A+  S L++    +++  N+G
Sbjct: 84  VFVADARVFDAIAGFN-MHRGVLALGRSDAVPDRDALIAALPASSLVLAACGLSNHDNMG 142

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A AF  D ++              + + G++  +P+ R     + ++++H+ GF 
Sbjct: 143 SLFRNAAAFGVDAVLMDAASCDPMYRKSIRVSVGSVLTLPFARQGTAAELIERLHAAGFA 202

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             GLS   +  + +     ++AL++G EG+GL           A +     + +LNV+ A
Sbjct: 203 IWGLSPRGETEVTEIPPAQRVALLVGTEGEGLPQAVLSAV-RTARIRQRPGLDSLNVAMA 261

Query: 269 AAVALYITQN 278
           A +AL+    
Sbjct: 262 AGIALHEVAR 271


>gi|283955600|ref|ZP_06373093.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792825|gb|EFC31601.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni 1336]
          Length = 227

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    +  +       F +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILEYHKDCINKLYLAKECD-KATFSKIAKSGFKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I     
Sbjct: 59  GNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K
Sbjct: 119 LAMEG--VIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|255324981|ref|ZP_05366088.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297970|gb|EET77280.1| 23S ribosomal RNA methyltransferase [Corynebacterium
           tuberculostearicum SK141]
          Length = 268

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 107/257 (41%), Gaps = 12/257 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
            +++ N+  +  S    +   G   V + L      + +L+     +     +   P   
Sbjct: 13  DIRNLNKSDK--SGEGLVIAEGP-LVVSRLAESRFPMRRLVGFPKKVEAYISEYGEPE-C 68

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAI 150
           P+  V  +T+ ++ G + +H+GL         P + + +  ++ + VL+ V D  NIGAI
Sbjct: 69  PIYEVSRETLAEVAGFD-MHRGLVAAADRAPEPEVSEILETAKTIAVLEGVGDHENIGAI 127

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR----ISNLTDALQKMHSWG 206
            R A     D ++     +        + + G +  +P+       +    +LQ +    
Sbjct: 128 FRHAAGMGVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQALADAS 187

Query: 207 FQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           F  I L+ + +     E  +  DK+A+++GAEG GL     +     A + M     +LN
Sbjct: 188 FTLISLTPNPQAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPGTDSLN 247

Query: 265 VSNAAAVALYITQNHFA 281
           V+ AAA++ Y  Q   +
Sbjct: 248 VATAAAISFYERQRSLS 264


>gi|282599849|ref|ZP_05972117.2| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282567380|gb|EFB72915.1| tRNA guanosine-2'-O-methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 226

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A+R   L + L+ ++ PHN+ AI+RSA A     I       P +   L+  SA+G+   
Sbjct: 3   AMRQPDLTLCLEEIHKPHNVSAIVRSADAIGIHQI---HAIWPDQHVKLSVSSAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  I  S+  DA+ ++ + G Q +  + S+      +        +++G E KG+  K  
Sbjct: 60  VKVISHSSTEDAIAQIKAQGMQVLATNLSEHAVDFREIDYTRPTCIMMGQEKKGISQKAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ +Y  Q   
Sbjct: 120 ALADQHIIIPMAGMVQSLNVSVASALIMYEAQRQR 154


>gi|161936340|ref|YP_128429.2| tRNA guanosine-2'-O-methyltransferase [Photobacterium profundum
           SS9]
          Length = 234

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A     +       P E+  VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAVGIHKV---HAVWPKENMRVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N+ DA+ ++ + G Q +  + SD+             A+ILG E  G+  +  
Sbjct: 71  VELDTHDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 AQADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|325962866|ref|YP_004240772.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468953|gb|ADX72638.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 303

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 95/278 (34%), Gaps = 32/278 (11%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--------IFQLLATKNALA 79
           RD  K+     + +      +    G   V  AL    ++        + ++ A++  L 
Sbjct: 21  RDVAKLAGRPARLKR----GHFLAEGPQAVREALKLHQQRLASGGPGVVSEVFASEACLD 76

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVL 138
           R      L      +      +  +       QG+      +  P  + +    +L+ VL
Sbjct: 77  RFPEFEELSQGVNARLATDDVLAAMADT-VNPQGIIAVCRFVDVPLEEVLDGGPRLIAVL 135

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             V DP N G +LR+A +   D ++ T       +    +S +G+L H+P +  +++ + 
Sbjct: 136 CQVRDPGNAGTVLRAADSAGADAVVLTASSVDIYNPKAVRSTAGSLFHLPVVLGADVGEL 195

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE------------------QEIKNDKIALILGAEGKGL 240
                + G   +         L+                          A + G E +GL
Sbjct: 196 AAACRARGIGILAADGYGSLNLDTLQDESARRRLTGAGPSSTYALEQPTAWLFGNEAQGL 255

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +    A     + + G  ++LN+  AA V LY +  
Sbjct: 256 SEEELALADHRVAVPVYGSAESLNLGTAATVCLYASAR 293


>gi|85098226|ref|XP_960584.1| hypothetical protein NCU01404 [Neurospora crassa OR74A]
 gi|28922085|gb|EAA31348.1| predicted protein [Neurospora crassa OR74A]
 gi|38566824|emb|CAE76131.1| related to rRNA (guanine-N1-)-methyltransferase [Neurospora crassa]
          Length = 644

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 126/324 (38%), Gaps = 68/324 (20%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-- 72
            +++     R  HRD       +    +T+     FLYG   V AAL +  RK+++L   
Sbjct: 297 RRETDRTPRRELHRDLDTETPKSLSIPYTTAASQ-FLYGTSVVEAALQSARRKLYKLYIY 355

Query: 73  --ATKNALARLDWDANLPHPFPVKTVPPQT-----IDKIVGKEAVHQGLALETAPLLSPT 125
             A +  LA+      L     V+TV         +DK+ G    H G  LE +PL  P 
Sbjct: 356 AGANREKLAKDAAIQKLAQRNKVETVFVNEEGLKMMDKMSGSR-PHNGYILEASPLPQPP 414

Query: 126 LDAVRN-----------------------------------------SQLLMVLDHVNDP 144
           + ++                                             L++V+D + DP
Sbjct: 415 VISLGEVVDAESGQGTTGYKVVLGHQSHEEALINGKSDFVAASSATHKPLVVVVDQILDP 474

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAILRS        +  TKR S S + V  K+++GA E +    I +L   LQ    
Sbjct: 475 GNLGAILRSVSFLGATAVAITKRDSASLTPVALKASAGASESLTLFSIDHLPKFLQDSRE 534

Query: 205 WGFQTIGL------SSDSKKPLE-------QEIKNDKIALILGAEGKGLRPKTQETATSM 251
            G+           S + +K L+         +  +   L+LG+EG+GL  + +  A   
Sbjct: 535 NGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLGKNPCILLLGSEGEGLPGQIKSKADYE 594

Query: 252 AHLH-MPGI--IKALNVSNAAAVA 272
            ++  M G   I +LNVS AA + 
Sbjct: 595 VNIPNMSGGTVIDSLNVSVAAGLL 618


>gi|123440446|ref|YP_001004440.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087407|emb|CAL10188.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 230

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     I          + +   SA+G+   +
Sbjct: 14  ATRQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQIHAIWPTPAMYTRL--SSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S++TDA+  + S G Q +    SD      +        +++G E  G+  +   
Sbjct: 72  QVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 MADKDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|42561043|ref|NP_975494.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492540|emb|CAE77136.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320852|gb|ADK69495.1| RNA methyltransferase, TrmH family [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 255

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 31/281 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI                  K++     + +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKI------------------KEILKLKDR-KHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T   L  L  +  +P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKTLEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +  +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENTK-IDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEG 237
            G L  +  +    L   + ++H   +  IG S  D  KPL +     +DK ALI+G EG
Sbjct: 154 QGNLFQVNLVN-EYLVTVINQLHDNNYIIIGTSLHDDSKPLSKVKFDSDDKYALIIGNEG 212

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           KG+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 213 KGISPELLDLIDLNINIEMAEDVDSINAAVAGSIIMYQINN 253


>gi|88809150|ref|ZP_01124659.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
 gi|88787092|gb|EAR18250.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 7805]
          Length = 291

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 115/296 (38%), Gaps = 34/296 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ IS  + E I S          R +   K+++S   ++    + + + L G H V   
Sbjct: 1   MSAISGAEGEPISS----------RRNPLIKRIRSLQSRT-GREKEQCVLLEGTHQVQEL 49

Query: 61  LNN--PSRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L    P     Q+LAT           A LP P  ++ +  + +   +    VH      
Sbjct: 50  LAQALPWTDPLQVLATPLWFQNHQALLAGLPGPVQLQLMSSEALGAALST--VHPDGVAC 107

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P              ++ LD + DP N+G +LR+A+A   + +      +    + + 
Sbjct: 108 LWPFNR-LPSPGPQPNFVLALDRLQDPGNVGTLLRTALAADVEQVW-MGAGADPLGSKVV 165

Query: 178 KSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGL------SSDSKKPLEQE 223
           +SA+GA+  +P  R        +  L  AL++  + G Q +        +    +P  Q 
Sbjct: 166 RSAAGAILTLPLRRFGLTDAQGVEQLATALKEARTRGLQVVATLVPNAATGLQVEPYWQL 225

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
                  L+LG EG GL P+     +    L     +++LNV+ AAAV  L   + 
Sbjct: 226 DWCRPTVLVLGNEGSGLHPRLLACCSHGVTLPHGRKVESLNVA-AAAVPLLLERRR 280


>gi|296425385|ref|XP_002842222.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638483|emb|CAZ86413.1| unnamed protein product [Tuber melanosporum]
          Length = 420

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 106/287 (36%), Gaps = 62/287 (21%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVPPQTID 102
            ++YG   V AAL    R++++L        T  A  R     +L     V+ V  + + 
Sbjct: 128 EWIYGTSVVEAALRCKRRELYKLYVYAGDNRTPAARERDRDMKDLARTAGVEIVDEEDMG 187

Query: 103 KI--VGKEAVHQGLALETAPLLSPTL---------------------------------- 126
           K+  +     H G  LE  P+    +                                  
Sbjct: 188 KMDSMSNSRPHNGYVLECLPIKRTPIIALKGVQEDRNFFTLEMARHYFDGRPVTEHYYDK 247

Query: 127 ----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               D  R    +++LD + DP N+GAILRSA     D +  T R     S V  K+++G
Sbjct: 248 IRCRDPKRRYPFVLMLDEILDPGNMGAILRSAYFLGVDAVTITARNCARLSPVCLKASAG 307

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-----DSKKPLE-------QEIKNDKIA 230
           A E +P    +     + +    G+             +++          + +K   + 
Sbjct: 308 AAELLPIFEHAKSERMITQSTENGWTVYAAIPPPTKNQARRDRYVYAPEVAEVVKEGPVV 367

Query: 231 LILGAEGKGLRPKTQETATSMAHL-HMPGI---IKALNVSNAAAVAL 273
           L++G EG+GLRP  ++ A     L   PG    + +LNVS A A+  
Sbjct: 368 LLVGNEGEGLRPPLKKLAKFCVSLVKGPGTDSLVDSLNVSVATALLC 414


>gi|116328938|ref|YP_798658.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116330456|ref|YP_800174.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116121682|gb|ABJ79725.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116124145|gb|ABJ75416.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 277

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 104/256 (40%), Gaps = 10/256 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K + +  +K +H       F+ G   +S A  +   +   +L +       + + +L   
Sbjct: 21  KHISNLKEK-KHRETSGLFFIEGYREISRAQKSGKVRFQNVLYSPECFLG-ENEFSLIRS 78

Query: 91  FPVK--TVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNSQLLMVLDHVND 143
             VK   VP +  +KI  ++     +A     P          +  +  + ++V++ V  
Sbjct: 79  IGVKNIKVPKKVFEKISYRDRPDGLIATAHFFPIGLDFFEKKSETFKKLKPILVIEGVEK 138

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A       +I +       +  + ++++GAL  +    +  +      + 
Sbjct: 139 PGNLGTILRTAEGAGFHTVIVSDPKLDLFNPNVIRASTGALFTLDV-YLGEIETIYGILK 197

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              ++T+ ++ ++KK         KIAL+ G+E  GL    +  +     L M G   +L
Sbjct: 198 KNHYRTLAVTPEAKKFYFDADLKGKIALVFGSEQYGLSSYARNHSDEYLSLPMLGEADSL 257

Query: 264 NVSNAAAVALYITQNH 279
           N++ +A + +Y     
Sbjct: 258 NLAMSAGILMYEVIRQ 273


>gi|323494590|ref|ZP_08099694.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323311193|gb|EGA64353.1| tRNA guanosine-2'-O-methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 227

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     I       P+E   L+ +++GA   +  
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADATGIHKI---HAVWPNEMRTLSHTSAGARNWVDV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++ +A+ ++ S G Q +  + SD+     +       A+ILG+E  G   K ++ A
Sbjct: 73  ETHDSIEEAITELKSQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|16126553|ref|NP_421117.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|221235335|ref|YP_002517772.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|13423835|gb|AAK24285.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|220964508|gb|ACL95864.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 268

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTV 96
           K R     E LF+    TV  A   +  +++  LL       +L D  A LP   P+   
Sbjct: 22  KERDLVGREGLFIAEGETVLRAFTRDAPQRVVSLLIDPKRREKLADVFAGLPEFTPIYLA 81

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
               +D I G   +H+G+        +      L ++    +++VL  + +  N+G I R
Sbjct: 82  EQGVLDAIAGFH-LHRGILAVGRKPPAVAARDLLASLPARAMVLVLCGIANHDNMGGIYR 140

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  D I+              + + GA+  +P  R+S        + + GF+ + L
Sbjct: 141 NAAAFGADAIVLDADCCDPLYRKAIRVSVGAVLSVPTARLSRDESIADLLDATGFEGLAL 200

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S  + + L       + A++LG EG GL P     A     + M     +LNV+  + + 
Sbjct: 201 SPSADEILATLKPAARTAVLLGTEGPGLSPDVMARA-RRIGIPMANSFDSLNVATTSGIV 259

Query: 273 LYITQ 277
           L+  +
Sbjct: 260 LHHLR 264


>gi|74224181|dbj|BAE33706.1| unnamed protein product [Mus musculus]
          Length = 321

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 25/225 (11%)

Query: 73  ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
             +   A L   A      PV     Q +D + G + VHQG+ +E +PL     D   ++
Sbjct: 78  GLQGERAELLRVAE-ARGIPVLRPRRQKLDALCGYQ-VHQGVCMEVSPLRPRPCDEAADT 135

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                  QL +VL+ + DP N+GA++RSA     D +IT++R S   + V++K+++GA+E
Sbjct: 136 SSGDDPQQLWLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAME 195

Query: 186 HIPYIRISNLTDALQ---------KMHSWGFQTIGLSSDSKKPLE---QEIKNDKIALIL 233
            +      +L   LQ             WG     +S  SK P+    + + +    L+L
Sbjct: 196 VMDVFATPDLPGFLQAKAPAGGGSWWAQWGCPGPEISQSSKVPITSCLEFVWDRPTLLVL 255

Query: 234 GAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALY 274
           G+EG GL  +   +   +  +    H+P  +++LNVS A  + L+
Sbjct: 256 GSEGSGLSQEVFASCQLLLTILPRRHLPPGLESLNVSVATGILLH 300


>gi|238764307|ref|ZP_04625258.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
           33638]
 gi|238697458|gb|EEP90224.1| tRNA guanosine-2'-O-methyltransferase [Yersinia kristensenii ATCC
           33638]
          Length = 231

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     I     +   E      SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQIHA--IWPTPEMYTRLSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S++T+A+  + S G Q +    SD      +        +++G E  G+  +   
Sbjct: 72  QVKTHSDITEAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 MADKDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|332653528|ref|ZP_08419273.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332518674|gb|EGJ48277.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 253

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 100/253 (39%), Gaps = 10/253 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLD 82
            R +   +K++  +   R   +    +L  G+  +  AL       + +  T   +    
Sbjct: 7   SRKNPLMQKIRQLSSGGRSVREKAGEYLGDGIKLLEEALK------WDVPLTTVVVTPEV 60

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
               LP    +  VP   ++ I       QG AL  A L S T       +  +VLD V 
Sbjct: 61  TPPALPAGVRLVQVPRDVMETI-SPMKTPQG-ALFLAQLSSTTPPQRLEGKRYLVLDGVQ 118

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I RSA A   DG++     +   S  + ++  GA   +P    + + +    +
Sbjct: 119 DPGNVGTIWRSADALGADGLLLVNGCADPYSPKVVRATMGACFRLPV-WETTVEELEGLL 177

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +        +        ++    + A+++G+EG+G+     + A     + M    ++
Sbjct: 178 KTSQIPLYATALREDTVDVRQADLGRAAVVIGSEGRGVSQALLDRAEQTVKIPMRERCES 237

Query: 263 LNVSNAAAVALYI 275
           LN ++AA V L+ 
Sbjct: 238 LNAASAAVVVLWE 250


>gi|295690458|ref|YP_003594151.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295432361|gb|ADG11533.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 268

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 102/245 (41%), Gaps = 8/245 (3%)

Query: 39  KSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTV 96
           K R     E LF+  G   + A + +   ++  LL       +L D  A+LP   PV   
Sbjct: 22  KERDLVGREGLFIAEGETVLRAFVRDALERVVSLLIDPKRRDKLEDVFASLPEDVPVHFA 81

Query: 97  PPQTIDKIVGKEAVHQGLALE-TAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
               +D I G   +H+G+      P     +  L  +    +++VL  + +  NIG I R
Sbjct: 82  DQAVLDSIAGFH-LHRGVLAVGRKPQPVAANALLAGLPARAVVLVLCGIANHDNIGGIYR 140

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  D +I              + + GA   +P  R+    D    + + GF+ + L
Sbjct: 141 NAAAFGADAVILDADCCDPLYRKAIRVSVGAALSVPTARLGRGEDIADLLANTGFEALAL 200

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S  + + L +     + A++LGAEG GL P     A     + M     +LNV+  + + 
Sbjct: 201 SPSASEVLARLKPAPRTAVLLGAEGPGLSPDVMARA-RTVGVPMAKGFDSLNVATTSGIV 259

Query: 273 LYITQ 277
           L+  +
Sbjct: 260 LHHLR 264


>gi|254502818|ref|ZP_05114969.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438889|gb|EEE45568.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 280

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 94/259 (36%), Gaps = 5/259 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLD 82
           ++   K+++    + +  +Q       G+   + AL+      +  L   A  N  A+  
Sbjct: 20  SNPIVKEIKGLVAQRKLRTQSGLFVAEGLKLATDALSAGWGVRYLALGPEARDNPAAQKA 79

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     +  V    +  +  K+     + +    +LS      + + + + LD V 
Sbjct: 80  AATAKARGALILEVSTAVMSAMTRKDNPQMVVGVYEQNILSARDIDPQGTTVWVALDRVR 139

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+  A    G++     +   +    ++  G+L H+P  +++   +     
Sbjct: 140 DPGNLGTIIRTVDAVGGSGVMLVGDCTDPFAVEAVRATMGSLFHVPLAKMTK-EEFKALA 198

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             W                         L++G E KGL   T     ++  +   G   +
Sbjct: 199 KDWPGTVAATHLKGSVDYRTPDYKQPALLVMGNEQKGLEDDTAAACRTLIRIPQVGEADS 258

Query: 263 LNVSNAAAVALYI-TQNHF 280
           LN++ A  ++LY   +NH 
Sbjct: 259 LNLAVATGISLYEIRRNHL 277


>gi|13472801|ref|NP_104368.1| rRNA methylase [Mesorhizobium loti MAFF303099]
 gi|14023548|dbj|BAB50154.1| rRNA methylase [Mesorhizobium loti MAFF303099]
          Length = 274

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 87/256 (33%), Gaps = 6/256 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDW 83
           +   K +++   K +   Q       G+  V  AL+   +    + A             
Sbjct: 9   NPLIKDIKALALK-KFRDQQNAFMAEGLKLVIDALDLGWQIRTLVFAKAGRGNPAVEKVA 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     V  V  + +  I  ++     + + +   L+       N  + + LD V D
Sbjct: 68  ARTVAAGGTVLEVSEKVLVAITRRDNPQMVVGVFSQKFLALKDIRADNGDVWVALDRVRD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+  A    G+I     +   S    ++  G++  +P  + +     L    
Sbjct: 128 PGNLGTVIRTVDAVGAKGVILVGDTTDPFSVETVRATMGSIFAVPVAKAT-TEAFLAWRG 186

Query: 204 SWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +     G              +   + L++G E +GL      +   +  +   G   +
Sbjct: 187 GFSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLAASCDRLLRIPQAGRADS 246

Query: 263 LNVSNAAAVALYITQN 278
           LN++ A  + L+  + 
Sbjct: 247 LNLAVATGIMLFEIRR 262


>gi|227537933|ref|ZP_03967982.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242235|gb|EEI92250.1| TrmH family rRNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 249

 Score =  172 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 92/237 (38%), Gaps = 11/237 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q  +   Q     + G+ +V+  L++    +  L  T N   ++     +PH      + 
Sbjct: 14  QHKKFRKQHSLFVVEGIKSVTEFLSSAY-DVHALFYTANVTTKV---VKIPHNIKSYELT 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156
                KI   ++  QG+          T + +   +Q  +VLD V DP N+G I+R+A  
Sbjct: 70  DNEFSKISQLKS-PQGILALVRLPEEKTPEQLDFANQFTLVLDDVQDPGNLGTIIRTAEW 128

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F    I+ +     + +  + ++  G+L        ++L   ++ +        G   D 
Sbjct: 129 FGFKHIVCSAGTVDAYNPKVVQATMGSLSRTQIHY-TDLESFIRTVR---LPVFGALLDG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               E     + + +++G EG G+  K  +       +   G  ++LNV+ A  +  
Sbjct: 185 TSIYETRWGKEGL-ILMGNEGNGISEKLLDLIDHAVTIPRTGQAESLNVAVATTIFC 240


>gi|50365074|ref|YP_053499.1| rRNA methylase [Mesoplasma florum L1]
 gi|50363630|gb|AAT75615.1| rRNA methylase [Mesoplasma florum L1]
          Length = 251

 Score =  172 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 105/252 (41%), Gaps = 15/252 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++  K +       +  +      + G+H V+ A+      +  +   +   +++    
Sbjct: 8   SNKKIKDLIKLRDDKKFQTVENLFVIEGLHMVNEAIK--RNIVKTIFLEEKMFSKIYDIN 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N       + V  +     +      QG+      L    ++ + N   +++LD + DP 
Sbjct: 66  NFECVLISENVSNK-----ISSTKTSQGIFATCI-LEDQKINMLEN---ILILDQIQDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++RSA +F    ++ +       +  + +S  G L  I  I   +L   + ++   
Sbjct: 117 NMGTLIRSAASFEFQTVVASNNSVSFYNPKVLRSTQGNLFSINLIN-DDLIKTIDELKQN 175

Query: 206 GFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +Q IG   + +    ++I   KN K ALI+G E KG+  + +       ++ M   +++
Sbjct: 176 NYQIIGTVLNDETKFMKQIEFSKNQKYALIIGNEAKGISDELKPLIDINLNIEMSNEVES 235

Query: 263 LNVSNAAAVALY 274
           LN + A ++ +Y
Sbjct: 236 LNAAIAGSIIMY 247


>gi|205356595|ref|ZP_03223358.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345600|gb|EDZ32240.1| putative rRNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 227

 Score =  172 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    ++ +       F +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILEYHKDCINELYLAKECD-KITFSKIAKSGFKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I     
Sbjct: 59  GNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K
Sbjct: 119 LAMEG--VIRTSSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKISNGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLVLGSEGFGLSSKIVKKCDECVGIVMKNNFDSLNVSAAFAILC 221


>gi|332159669|ref|YP_004296246.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318603765|emb|CBY25263.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325663899|gb|ADZ40543.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860934|emb|CBX71212.1| tRNA guanosine-2'-O-methyltransferase [Yersinia enterocolitica
           W22703]
          Length = 219

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     I          + +   SA+G+   +
Sbjct: 3   ATRQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQIHAIWPTPAMYTRL--SSAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S++TDA+  + S G Q +    SD      +        +++G E  G+  +   
Sbjct: 61  QVKTHSHITDAITHLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKEALA 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 121 MADKDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|311740920|ref|ZP_07714747.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304440|gb|EFQ80516.1| SpoU rRNA methylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 105/257 (40%), Gaps = 9/257 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           ++      ++     E L +     V + L      +  L+     +     +   P   
Sbjct: 10  RLHDIRNLNKSDKSGEGLVIAEGPLVVSRLAESRFPMRCLVGFPKKVEAYISEYGEPE-C 68

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAI 150
           P+  V  +T+ ++ G + +H+GL         P + + V +++ + VL+ V D  NIGAI
Sbjct: 69  PIYEVSRETLAEVAGFD-MHRGLVAAADRAPEPEVSEIVDSAKTIAVLEGVGDHENIGAI 127

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR----ISNLTDALQKMHSWG 206
            R A     D ++     +        + + G +  +P+       +    +LQ +    
Sbjct: 128 FRHAAGMGVDAVLLGSGAADPLYRRSVRVSMGHVLRLPFAHLEGGFTTWQRSLQALADAS 187

Query: 207 FQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           F  I L+ + +     E  +  DK+A+++GAEG GL     +     A + M     +LN
Sbjct: 188 FTLISLTPNPEAVHLAEAMHGLDKVAMLVGAEGPGLTEHAMKATDIRARIPMAPGTDSLN 247

Query: 265 VSNAAAVALYITQNHFA 281
           V+ AAA++ Y  Q   +
Sbjct: 248 VATAAAISFYERQRSLS 264


>gi|257463319|ref|ZP_05627716.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060896|ref|ZP_07925381.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313686572|gb|EFS23407.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 224

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 6/187 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV  +  +  +K+  +E   QG+ L       P ++  + ++ L+VLD + DP N+G ++
Sbjct: 36  PVFLLSRKCFEKVSVQE-NSQGVILL---YSYPVIEISKAAKQLIVLDDIQDPGNLGTMI 91

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R   A     I  TK      +  + +S+ G++ H+    +    + L+ + +  +  + 
Sbjct: 92  RLVDAAGFSDIFLTKHSVDCYNEKVVRSSMGSIFHVRL-HVMEKKEILEYLQTENYHVLV 150

Query: 212 LSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +         +    +K A + G EG G+  +  E A     + + G  ++LNV+ AA 
Sbjct: 151 TTLQRDSVAYTEMQLKEKNAFVFGNEGHGVSKEFLELAEQKIIIPISGQAESLNVAMAAG 210

Query: 271 VALYITQ 277
           + L+ ++
Sbjct: 211 IILFYSR 217


>gi|315083589|gb|EFT55565.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA2]
          Length = 240

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 13/230 (5%)

Query: 43  TSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
            ++       G   +  A     P R    LLA +      D    L     V  V    
Sbjct: 2   EAEHGLFIAEGAKVIRRACEAGYPPRSF--LLAPRWIDGLRDLFDGL--DVEVFVVSETL 57

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +++ G   VH+G           +   +  ++ L+V + + D  N+GAI+R A     D
Sbjct: 58  AEQVTGFH-VHRGALASMCRQTRWSAADLMAARRLVVCEDIVDHTNVGAIIRCAAGIGWD 116

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++   R +        K++ G +  +P+ R+ +    L ++   GF    +        
Sbjct: 117 GVLLAPRAADPLYRRAIKTSMGTVFQLPWARLEDWAGGLGELRDHGFTVAAMELSGDSVT 176

Query: 221 EQEIKND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             E   D      K+AL++G EG GL       A  +  + M G + +LN
Sbjct: 177 LDEFSADLRQNPRKVALLMGTEGAGLSAHWISQADVVVRIPMAGGVDSLN 226


>gi|301108904|ref|XP_002903533.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
 gi|262097257|gb|EEY55309.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
          Length = 326

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 112/277 (40%), Gaps = 46/277 (16%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-------------- 76
           ++  +     +   Q     +YG+H+V  AL +  R    L   +               
Sbjct: 68  RQPLTRTNDGKDVPQLAGEGVYGIHSVLQALESGHRDTHALYVREERAPMDGQRPKKKSA 127

Query: 77  ----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
               AL R+  D        + +     ++ I G +  HQ                   S
Sbjct: 128 ADVRALERI-HDLAGSKGVEIHSTSKWMLNHITG-DKPHQ----------------SNRS 169

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI----P 188
            +++VLD ++DP N GAILRSA    C  ++ + R +   S  +++++ GALE +     
Sbjct: 170 PVILVLDEIHDPQNFGAILRSAHFLGCSAVVVSDRNTAPLSPAVSRASVGALEVMVANDK 229

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247
            ++  NL + L     +G++ +G SS        ++ +     L++G E +GLR   ++ 
Sbjct: 230 LMKARNLHEMLAVSGDFGWRVVGASSGPNSVTSTKLSDGQPTILVMGNEHRGLRKHIRQC 289

Query: 248 ATSMAHLHMPG-----IIKALNVSNAAAVALYITQNH 279
              +  +          + +LNVS A+A+ LY   +H
Sbjct: 290 CQDVVIIPGQATDEDTRVDSLNVSVASAILLYELLHH 326


>gi|21232594|ref|NP_638511.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|188990408|ref|YP_001902418.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21114393|gb|AAM42435.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|167732168|emb|CAP50360.1| 23S rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 300

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 8/232 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIV 105
            L LYG++ + A      + + ++  T+  + +        +      + V    + K+ 
Sbjct: 58  ELRLYGINAIQAVFKARPQALRKIYLTEARIPQFKALLAWCVAQRLGYRVVEEADLTKLA 117

Query: 106 GKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                H+G+  E   +    L        +   L + LD V +PHN GAILRS+  F   
Sbjct: 118 SST-HHEGIVAEVLRVPPQPLQDWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVA 176

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++     +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + +
Sbjct: 177 GLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQDV 236

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                  ++  ++GAE +G+  +          +H  G++++LNV++A AV 
Sbjct: 237 FATALPQRLVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVF 288


>gi|157144486|ref|YP_001451805.1| putative methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157081691|gb|ABV11369.1| hypothetical protein CKO_00203 [Citrobacter koseri ATCC BAA-895]
          Length = 348

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 92/245 (37%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 104 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 163

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +        ++ L+ V +PHN+G ++RS  
Sbjct: 164 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVSQADAQDCVLALEDVANPHNLGGMMRSCA 222

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD
Sbjct: 223 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRQAGYTIVTTSSD 281

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL       K+ L+LG E + L    +E       +   G ++ LNVS A  V L  
Sbjct: 282 QGKPLFSTALPAKMVLVLGRELESLPEAAREPGDLCVKIDGTGNVENLNVSVATGVLLGE 341

Query: 274 YITQN 278
           +  QN
Sbjct: 342 WWRQN 346


>gi|148653655|ref|YP_001280748.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1]
 gi|148572739|gb|ABQ94798.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1]
          Length = 278

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 104/264 (39%), Gaps = 17/264 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKI---FQLLATKNALARL 81
           +   K  ++   +SR   +     L GVH + AAL       +I   +  L+       L
Sbjct: 20  NPTAKLAKALLNQSRQRKKSGQTVLEGVHLIEAALQADFLPEQIIISYSGLSHPEVQTLL 79

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLL--MVL 138
              +N      V  V       I    +   G+  +    +    L A+++      ++L
Sbjct: 80  SSLSNYNLDNKVTVVSDSVYQGITTLGS---GVEIMAIVKVPQHDLQALKSPITTDCLIL 136

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + V D  N+G +LR+A A     II TK  + + S    ++  GA   +         + 
Sbjct: 137 NDVQDNGNVGTLLRTAAAVGIKTIICTKGSAQAWSPKTMRAGMGAQFGLTIYEGIEADEV 196

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  +          SS +   + ++  N  +A ++G EG+G+     + AT    L  P 
Sbjct: 197 LAYLR---LPVFATSSHTDNIIYKQNLNRPVAWVMGHEGQGVCDDIMKLATP-VALPQPN 252

Query: 259 IIKALNVSNAAAVALYIT--QNHF 280
             ++LNV+ A A+ +Y T  Q H+
Sbjct: 253 GQESLNVAIAGALCMYETLRQRHY 276


>gi|46447870|gb|AAS94526.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 249

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVGKEA 109
           G+  V   L +   +I  +   +       D   +L     V+   V  Q +DK+     
Sbjct: 10  GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKLYAGG- 68

Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+           LD +          L++ LD V DP N G + RS  A    G+I
Sbjct: 69  -HQGVVARLFEAGYVELDDLLQDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI 127

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQ 222
             +  +    A   ++A+GALE +P  R++NL  AL +    G+   G +  +       
Sbjct: 128 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 187

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   L+LG E KG+RP   +   ++ H+ M     + NV+ A A+ L
Sbjct: 188 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 238


>gi|304312834|ref|YP_003812432.1| hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
 gi|301798567|emb|CBL46797.1| Hypothetical protein HDN1F_32140 [gamma proteobacterium HdN1]
          Length = 565

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 112/297 (37%), Gaps = 24/297 (8%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSR------HTSQPENLFLYGVHT 56
            I K   E           K +  +++    ++     R      + + P    +YGV+ 
Sbjct: 270 FIDKSSREGRKQSAAPRKEKYQVWNKELPPSEAGANPDRSTLKLSNKADPNERKIYGVNA 329

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQ 112
             A        I +   T+ A+AR  ++  +            V  + +++I  +   H+
Sbjct: 330 SRAFFEQRPSDIIRAYFTE-AVARQHFNELMKFLASEKLAYHLVTSEDMERIT-ESTHHE 387

Query: 113 GLALETAPL--------LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           G+ L             +  T         ++ L+ + +PHNIGAILR A  F    I+ 
Sbjct: 388 GVCLLVRDPGAESFFHWIETTPPPAEEPHCILALEDLGNPHNIGAILRVAAHFGVSSIVV 447

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
               S + S    ++A G  EH+  +   + +  L      GF  +  SS     L    
Sbjct: 448 RDA-SLARSGAALRTAEGGGEHVRLLEADDFSRMLAACRREGFTVVSTSSHEGTSLFAAP 506

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
              ++ L++G E  GL    QE +     +     +++LNVS AA + L  Y  +NH
Sbjct: 507 LPARVVLLIGQESTGLSSSLQEGSDLKISIPGTKNVESLNVSVAAGILLAEYW-RNH 562


>gi|260887113|ref|ZP_05898376.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|260863175|gb|EEX77675.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
          Length = 290

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 114/291 (39%), Gaps = 30/291 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++++I                   K  +  + +R   +   +   GV  V  A
Sbjct: 18  MEKIESAQNKRI-------------------KWIASLKNARRRREEGVVVAEGVRLVEMA 58

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
                   F L  T  A      +  L        P+  V P+   K    +A  QG+ L
Sbjct: 59  AEAGWTTRFCL-VTAEAAREERAERILARLESLGCPLAEVTPEVYMKASDTDA-PQGILL 116

Query: 117 ETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 +     A+R    ++VLD V DP N G I+R+A A   D ++         SA 
Sbjct: 117 VLEERGASLAALAMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAK 176

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILG 234
             +++ G++ H+P +R  + T   + +     + +    D + +P      + ++AL  G
Sbjct: 177 AVRASMGSVFHVPVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFG 236

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT---QNHFAK 282
            EG G+  + +  A +   + M G  ++LNV+ AAA+ LY     +  F +
Sbjct: 237 NEGNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEAAGVRRGFRR 287


>gi|329889847|ref|ZP_08268190.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845148|gb|EGF94712.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 269

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 101/256 (39%), Gaps = 8/256 (3%)

Query: 26  NHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPSRKI--FQLLATKNALARL- 81
           N  D  ++ +F   K R  +    LF+     V   L + + +     +L  +  L +L 
Sbjct: 7   NDPDDPRIAAFRDVKERDLTGRHGLFIAEGEVVLRVLASEASRCTPVSILIAEKRLEKLW 66

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT---LDAVRNSQLLMVL 138
           +    LP    V       ++ + G +     LAL   P        LD++    + +V 
Sbjct: 67  EVLERLPGDVTVHMASQAVLNAVAGFDLHRGVLALGRKPEPVEPGALLDSLPERAVAVVA 126

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             + +  N+G + R+A AF    ++  +           + + GA+   P          
Sbjct: 127 CGIGNHDNMGGLFRNAAAFGAGAVLLDRTCCDPFYRKAIRVSVGAVLRTPMAMGLEAEAM 186

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +  +   GF+ + L+  +++ L +     + AL+LG+EG GL             + M G
Sbjct: 187 IDLLQGRGFEVLALTPSAEQTLAELKPGRRTALLLGSEGPGLPRDIIARC-RPVGIRMAG 245

Query: 259 IIKALNVSNAAAVALY 274
              +LNV+  +AVAL+
Sbjct: 246 GFDSLNVAATSAVALH 261


>gi|166713190|ref|ZP_02244397.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 303

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 95/232 (40%), Gaps = 8/232 (3%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIV 105
            + LYG++ V A      + + +L  ++  + +        +      + V    + K+ 
Sbjct: 63  EMRLYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLA 122

Query: 106 GKEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
              A H+G+  E       PL        +   L + LD V +PHN GA+LRS+  F   
Sbjct: 123 AS-AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVA 181

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++     +   S   A+ A G  E +P +++     A+ ++   GF       D  + +
Sbjct: 182 GLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPGTATAMAQLRQAGFAIAATLVDGGQDV 241

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                  ++  ++GAE +G+             +   G +++LNV++A AV 
Sbjct: 242 FAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 293


>gi|148240081|ref|YP_001225468.1| rRNA methylase [Synechococcus sp. WH 7803]
 gi|147848620|emb|CAK24171.1| rRNA methylase [Synechococcus sp. WH 7803]
          Length = 291

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 122/296 (41%), Gaps = 34/296 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I++ + E I S          R +   K+++S   K+   S+ + + L   H V   
Sbjct: 1   MPVIARAEGEPISS----------RRNPLIKRIRSLQSKAGRESE-QCVLLEVTHQVQEL 49

Query: 61  LNNPS--RKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
           L           +L T   L R  D  A LP P  V+ + P+ +   +    VH      
Sbjct: 50  LAQGEAWTDPLSVLVTPLWLQRHRDLLAQLPGPVQVQLMTPEALGAAL--TTVHPDGVAC 107

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             PL S    A  +   ++ LD + DP N+G +LR+A+A   + +      +    + + 
Sbjct: 108 LWPLKS-LPAAGPHPNFVLALDRLQDPGNVGTLLRTALAADVEQVW-MGAGADPLGSKVV 165

Query: 178 KSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGL-SSDSK-----KPLEQE 223
           +SA+GAL  +PY R        +  L  AL+   + G Q +     D+      +P  Q 
Sbjct: 166 RSAAGALLSMPYQRFGPTDAQGVEQLATALKDARTRGLQVVATLVPDAAAGLPVQPYWQL 225

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
                  L+LG EG GL P+     +    L     +++LNV+ AAAV  L   + 
Sbjct: 226 DWCRPTVLVLGNEGAGLHPQLLGCCSHGVTLPHGRKVESLNVA-AAAVPLLLERRR 280


>gi|310793697|gb|EFQ29158.1| SpoU rRNA methylase [Glomerella graminicola M1.001]
          Length = 588

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 128/334 (38%), Gaps = 62/334 (18%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M   ++++ E   + +  + ++   +   Y K  S    S   +   + FL+G   V AA
Sbjct: 225 MRDAARREVEGGEAPRRRYDSRRSEDDDSYAKRSSDFPVSVQYTTAASQFLFGRSVVKAA 284

Query: 61  LNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTV-----PPQTIDKIVGKEAVH 111
           L N  RK+++L       KN     DW         +K         + +DK+  K   H
Sbjct: 285 LKNSKRKLYRLYVYQGSNKNTTKDDDWILASAEKKNIKVTRIYENDQKLLDKM-SKGRPH 343

Query: 112 QGLALETAPLLSPTLDAVRN------------------------------------SQLL 135
            GL +E +PL    L  +                                        L+
Sbjct: 344 NGLVIEASPLPQLPLTGLGAESSELRGYPVHVARQSKEESEINGTEGFIPCRPGSPKPLV 403

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L+ + DP N+GAILR+A       +  T+R S + +  + K+A+GA E +    + + 
Sbjct: 404 LLLNEILDPGNLGAILRTARFLGVSAVAITQRTSSAITPTVLKAAAGAAEELRLFSVEDP 463

Query: 196 TDALQKMHSWGF-------QTIGLSSDSKK------PLEQEIKNDKIALILGAEGKGLRP 242
              L      G+        T GL +DS++         + +  +   LILG EG GL  
Sbjct: 464 VAFLDASQKAGWASYAAVAPTAGLRNDSRQWTPEGIEDAKPLTKEPTILILGNEGSGLPY 523

Query: 243 KTQETATSMAHLH---MPGIIKALNVSNAAAVAL 273
             ++ A+    +    M   + +LNVS A A+  
Sbjct: 524 DIRKKASREITIPRMVMSSSVDSLNVSVATALLC 557


>gi|324999431|ref|ZP_08120543.1| rRNA methylase [Pseudonocardia sp. P1]
          Length = 267

 Score =  172 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 7/258 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +     + RH        + G   +S AL+   R      A    L R +    
Sbjct: 9   NPRVKNLVRLRTR-RHRDAAGVTLVEGHDELSLALDAGVRPTEVYWAPD--LVRSEELLE 65

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                   +V  +   +I  +E+    LA+  AP        +R   L++V + +  P N
Sbjct: 66  RMPGARATSVTREVFARIAYRESPDGWLAVAPAPGRPLDELELRPDALVLVAEGIEKPGN 125

Query: 147 IGAILRSAVAFSCDGIIT---TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           +GA+LR+A A   D ++     +  +   +  + +++ G +  +P        +  + + 
Sbjct: 126 VGAMLRTAEACGVDAVVIATPDRAGTDFANPNVVRASKGTVFAVPVASAP-TAEVQEWLR 184

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G +++  +      L +       AL++G E  G+       A +   + M G + +L
Sbjct: 185 RRGVRSVVTTPAGTTELGRADLTGPTALVIGTEATGVTGPWLAGADATVVIPMRGTVNSL 244

Query: 264 NVSNAAAVALYITQNHFA 281
           N S AAAV L+      +
Sbjct: 245 NASIAAAVVLFEAVRQRS 262


>gi|197105361|ref|YP_002130738.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
 gi|196478781|gb|ACG78309.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
          Length = 261

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 91/255 (35%), Gaps = 9/255 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDW 83
           +   K +++ + + +   +       G+  V+  +         +   + A   L R   
Sbjct: 9   NPTVKAVRALHLR-KDRDETGLFLAEGLKHVTEGVELGHAPRILMYGPEAASHPLLRKAA 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHV 141
           DA       V  V  + + K+  ++   Q +     P +   L  +  + +   + L  V
Sbjct: 68  DATRRAGGEVIEVTQEILAKVSRRD-NPQAVV-GVFPQVYRPLSEIDPKAADCWVALHRV 125

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+R+A A  C G+I         S    ++  G++  +P  R     +    
Sbjct: 126 RDPGNLGTIVRTADAAGCGGVILVGECCDPYSVEAVRATMGSVFAVPLSRCGE-AEFAAW 184

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              W    +G    +              +++G E +GL P+          + M G   
Sbjct: 185 RKGWPGSVVGTLLSATHSHASADYRKPALILMGNEQQGLTPEMAALPDLNVKIPMRGRAD 244

Query: 262 ALNVSNAAAVALYIT 276
           +LN+S A  + +Y  
Sbjct: 245 SLNLSVATGIMIYAA 259


>gi|300870064|ref|YP_003784935.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
           95/1000]
 gi|300687763|gb|ADK30434.1| RNA methyltransferase TrmH family group 3 [Brachyspira pilosicoli
           95/1000]
          Length = 237

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 10/234 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           +F+   + +  AL+     +  +    +   +            +K V  + ++ IVGK 
Sbjct: 1   MFISSKNAIVEALSKDLVDVIYIKFPISKREKEIIKLAERKKVLIKNVDKREMESIVGKV 60

Query: 109 AVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
                +A          +D   +         L+ +LD + D HN+GAI+R+A  F   G
Sbjct: 61  YS---IAASVKENAEIGIDVFLDRALEKTSTPLIFILDSITDVHNLGAIIRNAYFFDLGG 117

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  K  +   +  + + ++GA  H+P    +NL   ++ M   GF     S      LE
Sbjct: 118 IIIPKDNAAPINEKVYEISAGAAYHLPISIETNLNRVIEIMKDKGFWVYYASEKGDTSLE 177

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               +   A+ILG E  G+R   ++ +     +       +LNVS A+A+  Y 
Sbjct: 178 NFKFDTPTAIILGNEHSGVRDSLKKNSDGSIIIRAQSDFDSLNVSAASAIISYA 231


>gi|219125428|ref|XP_002182984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405778|gb|EEC45720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 212

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 26/213 (12%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-------LLMVLDHVND 143
            P+ +V    ++ + G    HQG  L    L   +L+ + +         + +VLD V D
Sbjct: 1   IPIASVDKGVLNTLSG-NRPHQGYVLRCGKLFFESLNKIPHPDEDSAAPSMWLVLDEVVD 59

Query: 144 PHNIGAILRSAVAFSCD---GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           P N+GA+LRSA         GI+   + S   S  ++ +++GALE +     SNL   L 
Sbjct: 60  PQNLGALLRSAYFLGGSTKVGILVCAKNSAPPSPTVSAASAGALELVDLYSTSNLPRTLA 119

Query: 201 KMHSWGFQTIGLSS----DSKKPLEQ----EIKNDKIALILGAEGKGLRPKTQETATSMA 252
              S GF+ +G S+    D   PL +       +    L+LG+EG GLR    ++ T   
Sbjct: 120 AAESDGFRIVGASASVPRDLNVPLYELQEISEMSGPTILVLGSEGHGLRSLVAKSCTEFV 179

Query: 253 HLHM---PGIIKALNVSNAAAVALYITQNHFAK 282
            +      G + +LNVS    + L+    HF K
Sbjct: 180 KVPGAVDAGGVDSLNVSVTGGILLW----HFLK 208


>gi|283836029|ref|ZP_06355770.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291068213|gb|EFE06322.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 229

 Score =  172 bits (437), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A SA+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       ++DA+ ++ S G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHPTISDAVTQLKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|257451967|ref|ZP_05617266.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|317058516|ref|ZP_07923001.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313684192|gb|EFS21027.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 257

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 96/237 (40%), Gaps = 13/237 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  + +     G       L       + L         ++         P+ ++  +  
Sbjct: 26  YREEAKLFLAEGRK----FLEYSENASYVLF---REDIPIEETILEKFNCPIISLSSKCF 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +K+  +E   QG+ +         +   R+++ L++LD + DP N+G I+R   A     
Sbjct: 79  EKVSVQE-NSQGVIIL---YSYKNIVLSRDARQLIILDDIQDPGNLGTIIRLVDASGFSD 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPL 220
           II TK      +  + +S+ G++ H+    +  + + +  +    +  +  S  +   P 
Sbjct: 135 IILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKI-EIVDYLKKQQYNIVVTSLQEDSIPY 193

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +   +++ A + G EG G+  +  E A     + + G  ++LNV+ A  + L+ ++
Sbjct: 194 MEMSLDERNAFVFGNEGHGVSKEFLEIADEKVIIPISGQAESLNVAMALGILLFYSR 250


>gi|242791156|ref|XP_002481702.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218718290|gb|EED17710.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 536

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 123/345 (35%), Gaps = 96/345 (27%)

Query: 24  RRNHRDYKKMQSFNQKSRHT---------SQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           RR  +D++   +  ++ +           + P + F+YG+  V AA+    RK++ L   
Sbjct: 156 RRRGKDHEPTDAVPERIKTNVPVPATIPYTTPASEFIYGLSAVDAAIRCTRRKLYMLYIY 215

Query: 75  KNALARLDWD------ANLPHPFPVKTVPP---QTIDKIVGKEAVHQGLALETAPLLSPT 125
           +     L  +        L     VK       + +DK+      H G+ LE +P+    
Sbjct: 216 QAVGEELSPEKIALRKLALARGIQVKMAFAGWDKLLDKMSA-GRPHNGVILEASPMPQIP 274

Query: 126 LDAVR-------------------------------------------NSQLLMVLDHVN 142
           + ++R                                              L+++LD + 
Sbjct: 275 VTSLRPVPSPIDDFFEVGLDKQSVEEAEVNGSSNRIARVERFEEVEKSRFPLVILLDGIL 334

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+GA++RSA     D ++ T R S   + V  K+++GA E++   +  +  D +++ 
Sbjct: 335 DPGNMGAVIRSAYYLGVDALVLTGRNSAPLTPVTIKASAGAAENMTIFKAKSEIDFIRRS 394

Query: 203 HSWGFQTIGLSS-----------------------DSKKPLEQEIKNDKIALILGAEGKG 239
              G++     S                       +   P    + +    L+LG EG G
Sbjct: 395 RENGWRFYAADSPQNVSDLAATHGTLADYTATVAANGSSPSASLLTSAPTVLMLGNEGTG 454

Query: 240 LRPKTQETATSMAHLHMPG-----------IIKALNVSNAAAVAL 273
           L P+ +  A     +                + +LNVS AAA+ +
Sbjct: 455 LLPRIKAQADGYVSIPGARIRPDLGINDAARVDSLNVSVAAALLM 499


>gi|218297230|ref|ZP_03497886.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
 gi|218242423|gb|EED08963.1| tRNA guanosine-2'-O-methyltransferase [Thermus aquaticus Y51MC23]
          Length = 194

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 9/156 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---AVLAKSASGALEHI 187
              L +++++V+ PHN+ AILR+  A         + ++ + +       +++ G+ + +
Sbjct: 20  QPDLTVLMENVHKPHNLSAILRTCDAVGI-----LQAHAVNPTGGVPTFNETSGGSHKWV 74

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                     A + +   GF     +  +  +   +       A++LGAE  G+  +   
Sbjct: 75  YLEVHPTTEAAFRHLRERGFSVYATALKEGARDYREVDYTRPTAIVLGAEKWGVSEEALA 134

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A  + H+ M G++++LNVS AAAV L+  Q    +
Sbjct: 135 LADGLIHIPMLGMVQSLNVSVAAAVILFEAQRQRLQ 170


>gi|153951021|ref|YP_001397411.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938467|gb|ABS43208.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 227

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L      I +L   K    +  +       F +K +  +T  +   K 
Sbjct: 1   MIVYGKQIFFYILEYHKDCINELYLAKECD-KATFSKIAKSGFKIKKLDFKT-AQAYAKG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I     
Sbjct: 59  GNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   +P +  ++    + ++   GF         K+    +I N K
Sbjct: 119 LAMEG--VIRASSGAALDLPIVISNDALSVINELKQVGFYFYASDGSGKEIHSVKINNGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+LG+EG GL  K  +       + M     +LNVS A A+  
Sbjct: 177 KVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 221


>gi|12045106|ref|NP_072917.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|1723134|sp|P47494|Y252_MYCGE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MG252
 gi|3844850|gb|AAC71472.1| RNA methyltransferase, TrmH family, group 3 [Mycoplasma genitalium
           G37]
 gi|166079076|gb|ABY79694.1| RNA methyltransferase, TrmH family, group 3 [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 242

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 17/239 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           L+GV     A+NN   ++   L   +   +             +       +    ++  
Sbjct: 10  LFGVKAFEEAINN---QVHIKLVNISIRHKKLIPLIEAKKINFQIHSTNWFNNQY-RDIN 65

Query: 111 HQGLAL--ETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           HQ L    +T  LL P LD +      +    L++LD + DP+N GAILR+ +A   DGI
Sbjct: 66  HQELVAVLDTNQLLIP-LDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASEVDGI 124

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS---KKP 219
           I  K      +  + K++ G++ +   ++++NL+  + K+   GF T+  + D       
Sbjct: 125 IFKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVSTLDPIWKPID 184

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +     KI LI+G E +G+     + A     + M   I +LNVS A  + L+  +N
Sbjct: 185 YRKVDFAKKI-LIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFAWKN 242


>gi|159185217|ref|NP_355393.2| RNA methylase [Agrobacterium tumefaciens str. C58]
 gi|159140480|gb|AAK88178.2| RNA methylase [Agrobacterium tumefaciens str. C58]
          Length = 232

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 7/211 (3%)

Query: 69  FQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             +L  +N L+ + D  A+ P   PV       +D IVG   +H+G+      +    L+
Sbjct: 15  ESILILRNRLSGVADILADFPDDVPVYVAEAPVLDGIVGFH-LHRGILALGRRVRDDGLE 73

Query: 128 ----AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
               A+  S L++V   +++  N+GA+ R+A AF  D ++  +           + + G+
Sbjct: 74  QMTAALPASSLVLVGCGISNHDNLGAMFRNAAAFYADAVLLDETCCDPLYRKALRVSVGS 133

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +PY R     + L+++   GF   GLS D K  +    +++++AL++G EG+GL   
Sbjct: 134 VLSVPYHRGGGAVEMLERLSEEGFAIWGLSPDGKTEIRDIPRSERMALVIGTEGEGLPQS 193

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   A +     + +LN   A+ +ALY
Sbjct: 194 VLSRF-QTARIAQSPQVDSLNAGTASGLALY 223


>gi|302343505|ref|YP_003808034.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii
           DSM 2075]
 gi|301640118|gb|ADK85440.1| RNA methyltransferase, TrmH family, group 3 [Desulfarculus baarsii
           DSM 2075]
          Length = 248

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 12/248 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTI 101
           +  +  + G H V+ AL + ++    LL      +       +A       V+ +  + +
Sbjct: 2   ERRDDLIVGRHAVAEALADQAQTAIALLVVAGQRSEAVGRLVEAARAAGLKVEKIERRRL 61

Query: 102 DKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           D++ G  AVHQG+AL  A          L   L+      L++V+DHV DPHN+GA+LRS
Sbjct: 62  DQMAG-GAVHQGVALRVAAQGRYAAWDELLAVLEEAGRRALVLVVDHVQDPHNLGAMLRS 120

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A    G++  K  +   +  +AK+A+GAL  +   R++N++ AL  +   G  ++   
Sbjct: 121 AAAAGALGVVVPKDRACQLTPAVAKAAAGALGQVAVCRVANISQALAGLKEIGLWSVAAV 180

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +              +A+++G+E KG+ P  Q+    +A L +   +++LN S AA V L
Sbjct: 181 ARGGAAPWALDLRGPLAVVVGSEHKGVAPLVQKNCDMLATLPLAAGVESLNASVAAGVML 240

Query: 274 YITQNHFA 281
                  +
Sbjct: 241 MEVVRQRS 248


>gi|39974237|ref|XP_368509.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
 gi|145018333|gb|EDK02612.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
          Length = 616

 Score =  172 bits (436), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 104/284 (36%), Gaps = 60/284 (21%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVPP--QTI 101
           FLYG   V   L +  RK++ L        ++N    +           +  +    Q +
Sbjct: 305 FLYGRSVVEETLRSSRRKLYHLYIYDGLNRSRNPNDVVIEKLAQKRGVKITKLGEGHQRL 364

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-------------------------------- 129
              + +   H    LE +P+  P ++A+                                
Sbjct: 365 MSKMSEGRPHNNFVLEASPVPQPPIEALGPLSEVASRPGFEVSLGHQTAEDLEINGSSNF 424

Query: 130 ------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                 ++  L+++LD + DP N+G ILR+A       ++ ++R S + + V  K+A+GA
Sbjct: 425 VETEGGKHQPLVLLLDRILDPGNLGNILRTASFLGVSAVVISQRNSATLTPVALKAAAGA 484

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSS------DSKKPLEQE-----IKNDKIALI 232
            E +P     N    L      G++     +       S++ +        +  D   L+
Sbjct: 485 SETLPLFACDNPASFLHNSKESGWKIYAAVAPSRSRKKSEQDVYDIEDLDPLATDPCVLV 544

Query: 233 LGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVAL 273
           +G+EG+GL    +  +     +        I +LNVS AA +  
Sbjct: 545 VGSEGEGLPTMIKTKSHHAVTIPNSSGAHTIDSLNVSVAAGLLC 588


>gi|152991299|ref|YP_001357021.1| RNA methyltransferase [Nitratiruptor sp. SB155-2]
 gi|151423160|dbj|BAF70664.1| RNA methyltransferase, TrmH family [Nitratiruptor sp. SB155-2]
          Length = 227

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 4/225 (1%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       +++ S  I ++L  KN  A + W+        ++ +  +    +  K 
Sbjct: 1   MIVYGKQIFHYIIDHHSHIIQRILLNKNVDAGV-WNKLQRLGVKIERIDNKKAQALA-KG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG  LE    +    + V+N   L++L +V D  NIG+I+RSA A   DG++ +   
Sbjct: 59  GNHQGFLLEIEDYVFTPFEVVKNFDFLVLLYNVTDIGNIGSIVRSAYALGVDGLVISGLK 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              +   + + +SGA   +P     NL DA++++    F         +  +  +  + K
Sbjct: 119 -DLKMEGVIRRSSGAALDLPIALQFNLYDAIKELQDRNFLVYAADMQGE-DVRTKRFHGK 176

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            A++LG+EG+G+  K  +    +  + M     +LNV+ AAA+ +
Sbjct: 177 RAILLGSEGEGVPKKAVQKCNEILKIEMKRDFDSLNVAAAAAIFI 221


>gi|154174304|ref|YP_001407505.1| RNA methyltransferase [Campylobacter curvus 525.92]
 gi|112803838|gb|EAU01182.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter curvus
           525.92]
          Length = 226

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L+   + I ++  +K    +L +         +  V  Q    +  + 
Sbjct: 1   MIIYGKQLFLHILDKHPQTIEEIYLSKECDKKL-FSRICGVGKHISRVDNQKAQSLA-RG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG   +        ++ ++    + VL  ++D  NIGAI RSA A  C+G+I   + 
Sbjct: 59  GNHQGFLAKVGEYEFAAMNELKKMSFIAVLYGISDVGNIGAITRSAYALGCEGLIVVAKS 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                  + +++SGA   IP     +    L ++   GF     +S+ K  + +   + K
Sbjct: 119 --INMEGVLRASSGAAYEIPIALFEDGLSLLNELKQSGFCLYATASNGKN-VHEMKFDPK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ALI+G+E +G+  K          + +     +LNVS A A+  
Sbjct: 176 RALIMGSESEGIPQKALAKCDECVGIKLKEGWDSLNVSAAFAIIC 220


>gi|298368797|ref|ZP_06980115.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282800|gb|EFI24287.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 262

 Score =  171 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 97/282 (34%), Gaps = 26/282 (9%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI+  +++++                  K +     +++         L GVH + A 
Sbjct: 1   MKLITSAQNDRL------------------KYLSKLLSQAKARRASGQTVLEGVHLLQAY 42

Query: 61  LNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
           L      +   +       R  L   A LP    V +V    + +I         + L  
Sbjct: 43  LQAGLTPVQVYIPESKLQQREILALIAALPEQA-VTSVANAALSRITSLSEADDIMTL-- 99

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             +  P  DA   +   +VLD + DP N+G ++RSA A     ++     +   S  + +
Sbjct: 100 --INIPAQDAWPVNGDCVVLDRIQDPGNVGTVMRSAAAAGVGCLVVGIGSADVWSPKVLR 157

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +A GA   +       L   +            L   +   L     +   A I G EG 
Sbjct: 158 AAMGAHFLLKIHTEVRLAQWISSYRDK-VWATALHHQNNHNLYNLDLHQSAAWIFGNEGS 216

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+     +  +    + M G  ++LNV+ AA V L+      
Sbjct: 217 GVDDNILDQVSGCVRIPMAGKTESLNVAMAATVCLFEQMRQR 258


>gi|262273555|ref|ZP_06051369.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222533|gb|EEY73844.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 230

 Score =  171 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 2/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ P+NI AI+R+A A     +      + S+   L  +++GA   +
Sbjct: 14  ATRQPDLTVCMEEVHKPNNISAIIRTADAVGIHQVHAVWPKN-SKMRTLGGTSAGARNWV 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +   N  DA   + + G Q +  + S++     +       A+++G E  G+  +   
Sbjct: 73  DVVTHDNTPDAFAALKAKGMQILVTNLSETAVDFREIDYTKPTAIVMGQEKTGISQQALA 132

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 LADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 166


>gi|134102874|ref|YP_001108535.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915497|emb|CAM05610.1| RNA methyltransferase TrmH, group 3 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 234

 Score =  171 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 8/233 (3%)

Query: 58  SAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
            AAL++   ++ +++  +    A+     +A       V+      +  + G     QG+
Sbjct: 2   LAALSDYDLRVDKVIIAEGLGGAVISEIKEAAADRAVRVQRASAHRVKVLAGNGRHDQGV 61

Query: 115 ALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
             +       PL     D     + +++LD +  P N+G ILR+A A   DGI+   R  
Sbjct: 62  LADVVARKMRPLADALEDPATAPRNVLLLDGLTTPANVGMILRTATAAGIDGIVVPHRGV 121

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            S   ++ K+++G   H P +R      A + +   G+    L + +++ + +     + 
Sbjct: 122 ASLDPLVIKASAGVAFHAPVLRAQTAGHAAELLTEAGYPLYALEAGAQESIYEADFGSRA 181

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +LG+E  GL    Q        + M G +++LNV++AAAV  +       K
Sbjct: 182 VFVLGSETAGLSEDVQTRIAQSVAIPMRGGVESLNVASAAAVLCFELLRRTGK 234


>gi|330839114|ref|YP_004413694.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
 gi|329746878|gb|AEC00235.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
          Length = 273

 Score =  171 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 114/291 (39%), Gaps = 30/291 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   ++++I                   K  +  + +R   +   +   GV  V  A
Sbjct: 1   MEKIESAQNKRI-------------------KWIASLKNARRRREEGVVVAEGVRLVEMA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLAL 116
                   F L  T  A      +  L        P+  V P+   K    +A  QG+ L
Sbjct: 42  AEAGWTTRFCL-VTAEAAREERAERILARLESLGCPLAEVTPEVYMKASDTDA-PQGILL 99

Query: 117 ETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                 +     A+R    ++VLD V DP N G I+R+A A   D ++         SA 
Sbjct: 100 VLEERGASLAALAMRQEMHVVVLDGVQDPGNAGTIVRTADAAGADAVVCLADTIDVFSAK 159

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILG 234
             +++ G++ H+P +R  + T   + +     + +    D + +P      + ++AL  G
Sbjct: 160 AVRASMGSVFHVPVVRNVSRTALCEFLQQGRVRLLAADLDEAAQPYYAADYSGRLALAFG 219

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT---QNHFAK 282
            EG G+  + +  A +   + M G  ++LNV+ AAA+ LY     +  F +
Sbjct: 220 NEGNGVSDEVRRMAEAKLFIPMFGKAESLNVATAAALVLYEAAGVRRGFRR 270


>gi|326569788|gb|EGE19838.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
          Length = 258

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 15/262 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      I +L+ +++A A  + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AIHRLIVSESATAHDEV 63

Query: 84  DANLPHPFP--VKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              L    P  +  +      +I    ++V     +    +   +L  +      ++LD 
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVS---VMAVIDIPHRSLPTISGD--CLILDG 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  NIG +LR+A A     +IT+   +   S    ++  GA   +       + + LQ
Sbjct: 119 LQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIAVNEILQ 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K+ +        SS + K +        IA +LG EG+G+R +    A     L  PG  
Sbjct: 179 KLKT---PLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQ 234

Query: 261 KALNVSNAAAVALYI--TQNHF 280
           ++LNV  A +V  Y    Q H+
Sbjct: 235 ESLNVGIAGSVCFYEMLRQRHY 256


>gi|120603957|ref|YP_968357.1| RNA methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120564186|gb|ABM29930.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio vulgaris
           DP4]
          Length = 274

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKT--VPPQTIDKIVGKEA 109
           G+  V   L +   +I  +   +       D   +L     V+   V  Q +DK+     
Sbjct: 35  GLKPVLELLASDPARIDTVFIRRGRRTPDTDRLMDLCREMRVRFSLVEGQVLDKLYAGG- 93

Query: 110 VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            HQG+           LD +          L++ LD V DP N G + RS  A    G+I
Sbjct: 94  -HQGVVARLFEAGYVELDDLLRDAPDAPLPLIIALDQVQDPGNAGTLARSLYALGGAGLI 152

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQ 222
             +  +    A   ++A+GALE +P  R++NL  AL +    G+   G +  +       
Sbjct: 153 VPRHNAAYLGAGAHRAAAGALEKLPVARVANLARALDEAAEAGYAIYGAMCGEGSVNAFT 212

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   L+LG E KG+RP   +   ++ H+ M     + NV+ A A+ L
Sbjct: 213 ATLRTPCVLVLGNEDKGIRPNVAKRCDTLLHIPMLRDFDSFNVAQAGALLL 263


>gi|212534794|ref|XP_002147553.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
           18224]
 gi|210069952|gb|EEA24042.1| RNA methyltransferase, TrmH family [Penicillium marneffei ATCC
           18224]
          Length = 506

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 114/314 (36%), Gaps = 87/314 (27%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------ANLPHPFPVKTVPP- 98
           P + F+YG+  V AAL    RK++ L   + A   L  +        L     VK     
Sbjct: 158 PASEFIYGLSAVEAALRCTRRKLYMLYIYQAAGEELSPERIALRKLALARGIHVKMAFAG 217

Query: 99  --QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------------------------- 130
             + +DK+      H GL LE +P+    + +++                          
Sbjct: 218 WDRIMDKM-STGRPHNGLILEASPMPQVPVTSLQSVPSPTDEYFDVGLDKQSVEEAEVNG 276

Query: 131 -----------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                               L+++LD + DP N+GA++RSA     D ++ T R S   +
Sbjct: 277 SSNRIARVERFEEVAKSRYPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPLT 336

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS---------------DSKK 218
            V  K+++GA E++  ++ +N  D +++    G++     S               D   
Sbjct: 337 PVTIKASAGAAENMTILKANNEVDFIRRSRENGWRFYAADSPENVADLAATHGTLADDTT 396

Query: 219 PL--------EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-----------I 259
            +           +      L+LG EG GL P+ +  A     +                
Sbjct: 397 SIASNNTNQSANLLTTAPTVLMLGNEGTGLLPRIKAQADGFVSIPGARIRPDMGINDAAR 456

Query: 260 IKALNVSNAAAVAL 273
           + +LNVS AAA+ +
Sbjct: 457 VDSLNVSVAAALLM 470


>gi|116073311|ref|ZP_01470573.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9916]
 gi|116068616|gb|EAU74368.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9916]
          Length = 229

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 12/168 (7%)

Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSPSES 173
           P     L AV   R + L ++L+HV  PHN+ AILRS  A        +    R      
Sbjct: 5   PRRFERLKAVLDGRMANLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSLQGR-----P 59

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALI 232
                +A G+ + +P     +  DA+Q++ + GF+  G     + K           A +
Sbjct: 60  RTFNSTAQGSQKWVPLYDHPSTEDAVQQLKAKGFKLYGTHLGVNAKDYRDCDFTGPTAFV 119

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAE  GL    ++       + M G++++LNVS AAA  L+      
Sbjct: 120 LGAEKWGLSDTARDLMDEAVFIPMTGMVQSLNVSVAAATLLFEAVRQR 167


>gi|320667558|gb|EFX34478.1| putative methyltransferase [Escherichia coli O157:H7 str. LSU-61]
          Length = 345

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++VL++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLVLENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|189501044|ref|YP_001960514.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
 gi|189496485|gb|ACE05033.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
          Length = 267

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 15/254 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANL 87
            ++     QK ++  +       G+ TVS  +++      +  LL  K  L+ +      
Sbjct: 14  IRRFAKLLQK-KYRDREGLFLAEGLRTVSELMHHIPDAGYLIALLVEKEQLSHIPQSRRY 72

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVND 143
                +  +      ++ G  +  QG+    +       +     Q    L++ LD V D
Sbjct: 73  KEK--IYLIDSDEARRLSGT-STAQGIVGIFSQQKRSAGEISSQEQHAGELVLALDDVQD 129

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+A  F    ++     +   +    ++ +G++  + +  + +L   L+KM 
Sbjct: 130 PGNVGTILRTASWFGVSTVVCGPGTADRYNPKAIRAGAGSVFCLNHYSVGDLEKELEKMR 189

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----I 259
             G+  I  S        Q    ++  L++G E KG+       A     +   G     
Sbjct: 190 RAGYHIICSSLHGTDFRLQHAVPERTVLVIGNEAKGVSMSILRKADLQITIP-RGRKDAG 248

Query: 260 IKALNVSNAAAVAL 273
           +++LN + +A + L
Sbjct: 249 VESLNAAVSAGILL 262


>gi|326773519|ref|ZP_08232802.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
 gi|326636749|gb|EGE37652.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
          Length = 286

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 23/258 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     + R  +Q           ++ A+         L+A ++        A+  
Sbjct: 15  DYTRLTDVALRRRLETQRGLYMAESSKVITRAVAAGHAPRSFLMAPRHLEEMRPVIASAA 74

Query: 89  H--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ------L 134
                      PV   P + ++ I G       LA    P L+   + + +++       
Sbjct: 75  GCGGSDDGGEVPVFVAPEEVLESITGFHLHRGALAAMNRPELAGVPELLSSARGGAGAKR 134

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L+ + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI  
Sbjct: 135 VAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIER 194

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQE 246
              A+ ++H+ GF    L+ SD+   L++   +        ++A++LG EG GL  +T  
Sbjct: 195 WP-AMDELHAQGFTVAALALSDTSVALDEFAASPACTAPDSRVAVVLGTEGDGLSHRTIT 253

Query: 247 TATSMAHLHMPGIIKALN 264
            A  +  + M G + +LN
Sbjct: 254 AADEVVRIPMAGGVDSLN 271


>gi|83319453|ref|YP_424436.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283339|gb|ABC01271.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 255

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 31/281 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +IS   + KI                  K++     + +H ++ +   + G H +  A
Sbjct: 1   MEVISSVSNPKI------------------KEILKLKDR-KHRNKQKLFIVEGFHMIMEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + I  LL T  AL  L  +  +P+   V  +      KI       Q  A+ + P
Sbjct: 42  --YNDQIIKTLLGTSKALEVLKDE--IPNIEQVIEISENVAKKISDTVTSQQIFAICSMP 97

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
             +  +D   N   +++LD + DP N+G ++RSA +F+   +I +       +  + +S 
Sbjct: 98  ENTK-IDFENN---ILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRST 153

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEG 237
            G L  +  +    L   + ++H   +  IG S  D  K L +     +DK ALI+G EG
Sbjct: 154 QGNLFQVNLVN-EYLVKVINQLHDNNYIIIGTSLHDDSKALSKVKFDSDDKYALIIGNEG 212

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           KG+ P+  +      ++ M   + ++N + A ++ +Y   N
Sbjct: 213 KGISPELLDLIDLNINIEMAENVDSINAAVAGSIIMYQINN 253


>gi|209518723|ref|ZP_03267539.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160]
 gi|209500837|gb|EEA00877.1| tRNA/rRNA methyltransferase (SpoU) [Burkholderia sp. H160]
          Length = 289

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 99/252 (39%), Gaps = 19/252 (7%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            A   R++  YK++++    +    +  +  L G H  S  L+   +   +L    +   
Sbjct: 29  KAITSRDNPLYKRLKALAGSTHQQRRGGHALLEGFHLASTYLDVAGQP--ELCVVTDGAQ 86

Query: 80  RLDWDANLPHPFPVKTVPPQTI----DKIVGK--EAVHQ-GLALETAPLLSPTLDAVRNS 132
           R D    +     V  +    +    D + G+    VH  G+ L    L +P  + +  +
Sbjct: 87  RHDEAQAI-----VSRIDEHRLVTLPDALFGQLSNVVHGVGILLLVEKLDAPLPERIAEN 141

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VLD V D  N+G+ILRSA A     +      + + S+ + +S  GA   +     
Sbjct: 142 --CLVLDGVQDAGNVGSILRSAAAAGIQHVFCAPGTAYAWSSKVLRSGMGAHFLLQIHED 199

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                 ++++       +   S   + +     +  +A + G EG G+    ++  +   
Sbjct: 200 VEADALIERLA---VPIVITDSHGAEAIYDCDLSGPLAWVFGNEGAGVSQVWRDAVSLRV 256

Query: 253 HLHMPGIIKALN 264
            +  PG +++LN
Sbjct: 257 TIPQPGGMESLN 268


>gi|312796260|ref|YP_004029182.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312168035|emb|CBW75038.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 268

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 95/242 (39%), Gaps = 8/242 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++         +     L G+H   A L++  +    +L T++ALA++  
Sbjct: 15  SRDNPLFKHLKALTV-PAQQRKRGQALLEGLHLAEAYLDSVGQPAHCVL-TESALAQVQT 72

Query: 84  DANLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
              +    P + V     +   +       G+A        P  + V  +   +VLD V 
Sbjct: 73  AQIVARLDPSRVVRFSDVLFSQLSTLVNGIGIAFVVDVRPRPLPERVEAT--CVVLDGVQ 130

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     +  +   + + S  + ++  GA   +         D L ++
Sbjct: 131 DAGNVGSILRSAAAAGIGDVFCSPGTAHAWSPKVLRAGMGAQFLLRVHEQVEAADLLARL 190

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S   + L     +  +A + G EG G+  + +   +    +  PG +++
Sbjct: 191 A---VPVFVTDSHDAQALYDVDLSGPLAWVFGNEGAGVSAEWRAAVSRRVTIPQPGGMES 247

Query: 263 LN 264
           LN
Sbjct: 248 LN 249


>gi|328773133|gb|EGF83170.1| hypothetical protein BATDEDRAFT_85791 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 354

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 127/341 (37%), Gaps = 105/341 (30%)

Query: 40  SRHTSQPENL-FLYGVHTVSAALNNPSRKIFQLLATKNAL-------------------- 78
            +H+++P+N+ +LYG   V  A+    RKI  LL  ++                      
Sbjct: 11  RQHSTRPKNVEYLYGASVVIPAMEFGVRKIKTLLVKEDQRFGGMKIRGNGEAILSSKILP 70

Query: 79  ------------ARLDWDANLP--HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
                       A LD+   L      PVK VP   +D++ G    HQGL L T      
Sbjct: 71  KISSADMGQDSRALLDYAVALANQREIPVKEVPVSHLDRLAG-NRPHQGLVLATLAPKVT 129

Query: 125 TLDAV----------------------------------RNSQLLMVLDHVNDPHNIGAI 150
            L A+                                  R     + LD + DP N+GAI
Sbjct: 130 HLHALGNCDLDANDVDFEKNVYEVDAGGDGILRLKTREDRKYPFWIALDQIVDPQNLGAI 189

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA  F  DG++ T+R S   S + +K+++GA+E +P     NL   LQ+    G+Q +
Sbjct: 190 LRSAYYFGVDGVVVTERDSAPFSPISSKASAGAMEAMPLYSTVNLGKLLQESAINGWQIL 249

Query: 211 GLSSDSKKP-------------------LEQE--------IKNDKIALILGAEGKGLRPK 243
           G ++++KK                    L+          + +    L+LG EG G+R  
Sbjct: 250 GTNTNAKKSDLIPLCHFKQRCDMEVSNDLDDLKTHTPLLRLDSAPTILVLGNEGHGMRTL 309

Query: 244 TQETATSMAHLHM--------PGIIKALNVSNAAAVALYIT 276
             +       +             I +LNVS AA + L+  
Sbjct: 310 VSKHCHHHLIITQDQFSPNFKKSRIDSLNVSVAAGILLHEL 350


>gi|218547893|ref|YP_002381684.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218355434|emb|CAQ88042.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|323967625|gb|EGB63038.1| SpoU rRNA methylase [Escherichia coli M863]
 gi|323978389|gb|EGB73474.1| SpoU rRNA methylase [Escherichia coli TW10509]
 gi|327252291|gb|EGE63963.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli STEC_7v]
          Length = 345

 Score =  171 bits (435), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +    +K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|326563875|gb|EGE14126.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
 gi|326566546|gb|EGE16692.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
 gi|326571607|gb|EGE21622.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
          Length = 258

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 104/262 (39%), Gaps = 15/262 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +L+ +++A A  + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRLIVSESATAHDEV 63

Query: 84  DANLPHPFP--VKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              L    P  +  +      +I    ++V     +    +   +L  +      ++LD 
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVS---VMAVIDIPHRSLPTIGGD--CLILDG 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  NIG +LR+A A     +IT+   +   S    ++  GA   +       + + LQ
Sbjct: 119 LQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIAVDEILQ 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K+ +        SS + K +        IA +LG EG+G+R +    A     L  PG  
Sbjct: 179 KLKT---PLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQ 234

Query: 261 KALNVSNAAAVALYI--TQNHF 280
           ++LNV  A +V  Y    Q H+
Sbjct: 235 ESLNVGIAGSVCFYEMLRQRHY 256


>gi|298247217|ref|ZP_06971022.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297549876|gb|EFH83742.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 291

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 115/277 (41%), Gaps = 12/277 (4%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +K  +  K+   +  ++ +++  +K     + +  F+ GV  ++ AL +       + + 
Sbjct: 1   MKRPNIVKIYSENNQFQYIETLRRKREKRLRHKEFFIEGVRPINQALAHHWTINAFVYSR 60

Query: 75  KNALARLDWDANLPHPFPVKT---VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           +  L+  DW   +      +T   VP   ++K+  K    + LAL   P  +     +  
Sbjct: 61  EKQLS--DWAKGILARSQAQTHFEVPLHLLEKLSNKAESSELLALVAMPEDNLARIPLTQ 118

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L++V D    P N+G I+RS  A    G+I T             +++G+   +P +R
Sbjct: 119 NLLVVVFDRPASPGNLGTIIRSCDALEAHGLILTGHAVDLYDPETISASTGSFFALPTVR 178

Query: 192 ISNLTDALQKMHSWG-----FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           + +  D    + S        Q IG    +++ + Q        LI+G E  G+    +E
Sbjct: 179 LPSQRDIEPWLQSAKKKLGALQIIGTDEKAEQEISQHDFTVPTVLIVGNETWGMSAAYKE 238

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
              ++  + + G   +LNV+ A ++ LY    Q   A
Sbjct: 239 LCDAVVQIPLVGSASSLNVACATSICLYEVSRQRRLA 275


>gi|118594703|ref|ZP_01552050.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440481|gb|EAV47108.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 263

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 13/260 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R+   +K+++       +  +     L G H V+   +N       +L   +A  + D 
Sbjct: 8   SRDSATFKRLKKIYSSKSYRLEVGKTILDGPHLVNTCCDNGMDIAEFIL---DASIKTDE 64

Query: 84  DANLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           +  L   +P   +  +  +    +   ++V+  +A+   P      + V    L ++LD 
Sbjct: 65  NNRLLTKYPKKKLHILSHELFCALSDLDSVNGLMAIIDIPSHPYYSNGV---GLHLLLDD 121

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+GAILR+  A     +  +K      S  + + + G    +   +  +L   + 
Sbjct: 122 IQDPGNLGAILRTHAAAGNKFVFLSKGCCDLWSPKVIRGSQGTQFSLICYQQEDLALLID 181

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           ++    F    L    +  L +   +  IA ILG EG+G+     + +  M  + M   +
Sbjct: 182 RLE---FSVFSLGMQGESVLNR-KFDQNIAFILGNEGRGISSTLLKKSDQMLSIPMIKNV 237

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LNV  AA++ +Y     F
Sbjct: 238 ESLNVGVAASIVIYEHARQF 257


>gi|159037501|ref|YP_001536754.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157916336|gb|ABV97763.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 296

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 93/242 (38%), Gaps = 9/242 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTI 101
                    G   V  AL  P   + +L  T  AL R             PV TV    +
Sbjct: 37  EAAGRFLAEGPQAVREALARPH-TVLELFGTPAALDRHLDLVARATTADVPVSTVTDDAL 95

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             +  +    QGL      L  P    + R  +L+ VL  + DP N G +LR+A A    
Sbjct: 96  AGLA-ETVAPQGLVAVCQHLDLPLATVLARTPRLVTVLAGIRDPGNAGTVLRTADAAGAQ 154

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++         +  + ++++G+L H+  +R S+    +  + + G   +  +      L
Sbjct: 155 VVVFAGAAVDPYNGKVVRASAGSLFHVDVVRASDPPQVITDLRAAGLAVLATTGYGADDL 214

Query: 221 EQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +            A I G+E  GL  +    A +   + + G  ++LN++ AAAV LY +
Sbjct: 215 DDLADAGRLAAPTAWIFGSEAHGLPDELTTAADARVRVPLHGRAESLNLAAAAAVCLYAS 274

Query: 277 QN 278
             
Sbjct: 275 AR 276


>gi|218659677|ref|ZP_03515607.1| rRNA methylase protein [Rhizobium etli IE4771]
          Length = 343

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 4/188 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAIL 151
           V  V  + I  I  ++   Q +         P  D   R  +  + LD V DP N+G I+
Sbjct: 11  VLEVSEKVIGSITRRD-NPQMVVGIFDQRWKPLKDIRPREGETWVALDRVRDPGNLGTII 69

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I     +   S    ++  G++  +P  R +   + L    S G   + 
Sbjct: 70  RTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARAT-PEEFLAWRKSAGVSVVA 128

Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
                             I L++G E  GL  +  + A ++A +   G   +LN++ A A
Sbjct: 129 THLAGAVDYRTIDYRKKPIVLLMGNEQSGLPEQLAKEADALARIPQQGRADSLNLAVATA 188

Query: 271 VALYITQN 278
           V L+  + 
Sbjct: 189 VMLFEARR 196


>gi|121601762|ref|YP_989293.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120613939|gb|ABM44540.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 271

 Score =  171 bits (435), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 105/244 (43%), Gaps = 11/244 (4%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTI 101
           T +       G   +SA L++ +     LL     L  +        P   +  VP + +
Sbjct: 28  TRRQHQFVAEGKVVLSALLHSKNFSTLSLLVVAARLLEIMPILKETKPTCSIYCVPQKIM 87

Query: 102 DKIVGKEAVHQGLA----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           D I G   VH+G+      +  P L   L  +    L+ VL  +++  N+GAI R+A AF
Sbjct: 88  DDIAGFH-VHRGMLGIGERKALPSLQEFLQDLPERALVPVLCGISNNENMGAIFRNAAAF 146

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
           +  GII  K         + +S+ GA   IPY + +++   ++ +    F    LS  + 
Sbjct: 147 ASYGIIVDKTSCDPLDRTVIRSSVGATLRIPYTQGNDIESIIKTLSDANFHLYALSPSAP 206

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L++       ALILG EG  L     + +  +  + M     +LN++ A+ +AL    
Sbjct: 207 RYLKEAKTMKHTALILGTEGDSLPTHVLQKS-EILRIPMAYGFDSLNIATASGLAL---- 261

Query: 278 NHFA 281
            HFA
Sbjct: 262 AHFA 265


>gi|149195112|ref|ZP_01872204.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
           TB-2]
 gi|149134825|gb|EDM23309.1| RNA methyltransferase TrmH, group 3 [Caminibacter mediatlanticus
           TB-2]
          Length = 221

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 11/225 (4%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   V   +      + ++L    A      +      F +K +    + + + K 
Sbjct: 1   MIVYGKRIVEYIIQKHPDIVKEILI---AKKLNKNELKKFQNFEIKFID-NKLAQKLSKN 56

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           + HQG   +         D + +   +++LD+V D  NIGAI R+A A   D +I T   
Sbjct: 57  SNHQGFFAKI-EFTPQNWDIIGDK--ILILDNVTDMGNIGAITRTAYALGIDLLIITGIN 113

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                 ++ +++SGA   +  I I N+ D +  + + G+  +G     K    +  + +K
Sbjct: 114 ELKWDRII-RTSSGAALDMKIISIKNILDVINILKTKGYLIVGADLGGKC---KPSRKNK 169

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           IALILG EG+GL  K ++    +  + M     +LNVS AA + +
Sbjct: 170 IALILGNEGEGLNKKIKQKLDEVITIEMKREFDSLNVSVAAGILI 214


>gi|88802844|ref|ZP_01118371.1| putative rRNA methylase [Polaribacter irgensii 23-P]
 gi|88781702|gb|EAR12880.1| putative rRNA methylase [Polaribacter irgensii 23-P]
          Length = 265

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 106/272 (38%), Gaps = 13/272 (4%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           ++I S+ +S+           K++    +KSR   +     + G   +S A+        
Sbjct: 2   KEISSIHNSY----------IKELLKLQEKSRERKKKGLFIIEGKREISLAVAANYN-FD 50

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDA 128
            +L   + +   +             +  +   K+  + +    +A+ +        +  
Sbjct: 51  TVLYVDDLICEKEVLHLFNENVNRIQISKEIYQKLAYRASTEGVIAVTKAKDFSLEHIKF 110

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V  + L++V + +  P NIGA+LR+A A +   +      S   +  + +++ G +    
Sbjct: 111 VTKNPLILVAEGIEKPGNIGALLRTADAANVAAVFIANPKSDLYNPNIIRASIGCVFTTQ 170

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  + +  +     +    +  +     +E   +  A+ +G E  GL    +E A
Sbjct: 171 IAVGTS-EEIISYLTENNIRLYATTLQNSNEYHKENYTEASAIAVGTEDTGLTAVFRERA 229

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           T   ++ M G I ++NVS AAA+ L+  +   
Sbjct: 230 TQNINIPMQGEIDSMNVSVAAAIVLFEAKRQR 261


>gi|282864224|ref|ZP_06273280.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282560711|gb|EFB66257.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 274

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 11/245 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  A  N   ++  ++ T      +  D    
Sbjct: 17  DYTDLTDVELRRRREPAEGLFIAEGEKVIRRA-RNAGYEMRSMMLTAKWFD-VMRDVIDE 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVND 143
              PV  V P+  +++ G   VH+G          P +D +        + + V + + D
Sbjct: 75  ERAPVYAVTPELAERVTGYH-VHRGALAAMRRRPLPAVDTLLAPATGDVRRVAVFEDIVD 133

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+GA  R+A A   D ++ T R +        K + G++ H+P+ R+ +  D L  + 
Sbjct: 134 HANLGAAFRNAAALGVDAVLLTPRCADPLYRRAVKVSMGSVFHVPWTRLESWPDDLALLG 193

Query: 204 SWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + GF T  L    +      +    ++K+ALI G EG GL  +    A +   + M   +
Sbjct: 194 AAGFTTAALCLSDRSITLDALVARAHEKLALIFGTEGDGLTAQALAAADAHVRIPMDAGV 253

Query: 261 KALNV 265
            +LNV
Sbjct: 254 DSLNV 258


>gi|239908534|ref|YP_002955276.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           magneticus RS-1]
 gi|239798401|dbj|BAH77390.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           magneticus RS-1]
          Length = 237

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 12/226 (5%)

Query: 58  SAALNNPSRKIFQLL---ATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
              +    + +  +L     + A       A        + +P   +D++      HQG+
Sbjct: 2   RELVEQSPKSVDDVLLRQGLRGADVDAIVRACEAAGVRYRFMPGLDMDRL--YPGNHQGV 59

Query: 115 ALETAPLLSPTLDAVRNSQL------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
               A     +L+ V  + L      ++VLD V DP N+GA++R+  A    GI+  K  
Sbjct: 60  MARLAAGPLVSLEDVLAAGLDAPLQVILVLDRVQDPGNVGALVRTLYALGGGGILVPKHE 119

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKND 227
                   AK+++G L  +P  +++NL+ AL      G+  IG + + + + +       
Sbjct: 120 GARLGPGAAKASAGTLARLPLAKVTNLSQALDAAKEAGYTVIGAAGEEEAQNVHLAKPPF 179

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +AL+LG+E +G+RP  ++   ++  +     I +LNV+ A A+ +
Sbjct: 180 PLALVLGSEEEGIRPGIRKRCDALWRIPQARPIDSLNVAQAGAIMM 225


>gi|156936176|ref|YP_001440092.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534430|gb|ABU79256.1| hypothetical protein ESA_04075 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P +    +A SA+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGNRMRTMASSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N++DA+  + + G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VEVKTHRNISDAVNHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 SLADQDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|260462507|ref|ZP_05810714.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259031703|gb|EEW32972.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 265

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 108/262 (41%), Gaps = 12/262 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARL-DW 83
           + +D +     + + R  +  +  F+     V   L +  R     +L  ++ L  L D 
Sbjct: 8   DPQDPRVAAYLDIRERDLAGRQGRFVAEGKVVLDLLLSSRRFSAESVLVLESRLGGLKDT 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLD 139
               P   PV  V    +D I G   +H+G+      ET     P LDA+    L++VL 
Sbjct: 68  LDKAPVDLPVYIVTGAVMDAIAGFH-LHRGILAIGRKETPQPAGPLLDALPALALVVVLV 126

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            +++  N+G+I R+A AF  D ++              + + GA   IP+   ++     
Sbjct: 127 GISNHDNMGSIFRNAAAFGADAVLIDATCCDPLYRKAIRVSVGAALKIPFASFTDTAGFT 186

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +   GF+   LS   +  +       ++AL LG EG+GL             + M   
Sbjct: 187 AMLAERGFEQFALSPRGRTDIRDAKSAGRLALYLGTEGEGLPESLLARL-QTVRITMAEG 245

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LNV+ A+A+AL+    HF+
Sbjct: 246 FDSLNVAAASAIALH----HFS 263


>gi|154147987|ref|YP_001405828.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381]
 gi|153803996|gb|ABS51003.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter hominis
           ATCC BAA-381]
          Length = 226

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       L+   +   ++   K     L    +      +  +  +    +    
Sbjct: 1   MIIYGKQLFLHILDVHKQNFKEIYLAKEIDKSLFAKISRL-GVKILKIDNKKAQALA-HG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG   +        +  ++ ++ L++L +++D  NIGAI+RSA A   D I    + 
Sbjct: 59  GNHQGFLAKVDEFEFCEIADLKEAKFLVILWNLSDIGNIGAIVRSAYALGADAICVVSKN 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              E   + +++SGA   I   RI +    + ++   GFQ    + D +  ++      K
Sbjct: 119 LQIEG--VIRASSGAAYEIKIARIDDGAGLINELKQIGFQIFAATMDGED-IKTAKIGAK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            ALILG+EG+G+  K          + M     +LNVS A A+  
Sbjct: 176 TALILGSEGEGIPQKIVTKCDHSVSIKMKHGWDSLNVSAAFAIIC 220


>gi|257459137|ref|ZP_05624256.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
           RM3268]
 gi|257443522|gb|EEV18646.1| RNA methyltransferase, TrmH family, group 3 [Campylobacter gracilis
           RM3268]
          Length = 233

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 5/225 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG       LN   +K  +++  K     + +         ++    +    +  + 
Sbjct: 1   MIIYGKQLFLHLLNRHPQKFIRIILAKECEKEI-FKKIAATGVKIERADAKKAQALA-RG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG   E        L +V++ + + +L  + D  NIGAI+RSA A   D +I     
Sbjct: 59  GNHQGFLAEVEEFSFGDLASVKDDKFVPILYGLTDVGNIGAIMRSAYALGADSVIVVANN 118

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                A + +++SGA   +  ++ ++    L ++   GF+    S+      ++     K
Sbjct: 119 --LNMAGVVRASSGAAYELNVVKAADGLSVLNELKQSGFEIYAASA-GGTSFKELELGAK 175

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            AL++G E +G+  +  +       + M     +LNVS A A+  
Sbjct: 176 NALVMGNEEEGIPARALKKCDCAVSIKMREGWDSLNVSAAFAILC 220


>gi|257467228|ref|ZP_05631539.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918357|ref|ZP_07914597.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313692232|gb|EFS29067.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 257

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 96/237 (40%), Gaps = 13/237 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  + +     G       L       + L         ++         P+ ++  +  
Sbjct: 26  YREEAKLFLAEGRK----FLEYSENASYVLF---REDIPIEETILEKFNCPIISLSSKCF 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +K+  +E   QG+ +         +   R+++ L++LD + DP N+G I+R   A     
Sbjct: 79  EKVSVQE-NSQGVIIL---YSYKNIVLSRDARQLIILDDIQDPGNLGTIIRLVDASGFSD 134

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPL 220
           II TK      +  + +S+ G++ H+    +  + + +  +    +  +  S  +   P 
Sbjct: 135 IILTKNSVDYYNEKVVRSSMGSIFHVNLHTMEKI-EIVDYLKKQQYNIVVTSLQEDSIPY 193

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +   +++ A + G EG G+  +  + A     + + G  ++LNV+ A  + L+ ++
Sbjct: 194 MEMSLDERNAFVFGNEGHGVSKEFLDIADEKVIIPISGQAESLNVAMALGILLFYSR 250


>gi|32267245|ref|NP_861277.1| hypothetical protein HH1746 [Helicobacter hepaticus ATCC 51449]
 gi|32263298|gb|AAP78343.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 229

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 6/226 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   +   L+  +  I ++   K  L +  +        P+K V  +    +    
Sbjct: 1   MIVYGKQPILYILHTNASCIEEIYLAKE-LPKDIFKQLAQLDKPIKRVDMKKAQALA-HG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-KR 167
             HQG+     P    +L+ +++   L+VL +V D  NIG+I R+A A    G++     
Sbjct: 59  GNHQGILASIIPPSPLSLNDLKSKDSLLVLYNVTDVGNIGSIFRTAYALGVGGVVICLSN 118

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            S      +A+ +SGA  H+PY    ++ D + ++ +  F  IG     ++         
Sbjct: 119 LSQKAIESIARLSSGAFLHMPYGVFPHIFDIINELKNADFMLIGADMQGQES---CNVKK 175

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K AL LG+E +GL  + +    ++  + M     +LNV+ A  + +
Sbjct: 176 KWALFLGSESEGLSARLKHKLDTILSIKMEHHFDSLNVAVATGILI 221


>gi|238794541|ref|ZP_04638149.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
 gi|238726121|gb|EEQ17667.1| tRNA guanosine-2'-O-methyltransferase [Yersinia intermedia ATCC
           29909]
          Length = 230

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +      +   + +   SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRL--SSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                ++++DA+  + S   Q +    SD+     +        +++G E  G+  +   
Sbjct: 72  QVKTHTHISDAIAHLKSQNMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|254468840|ref|ZP_05082246.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
 gi|207087650|gb|EDZ64933.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
          Length = 257

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 114/282 (40%), Gaps = 25/282 (8%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I+ K + ++  L+   +      ++ Y++  +               + G H + A 
Sbjct: 1   MQFITSKDNSRLKELRKVQH------NKSYRQENNL------------TIIEGPHLLEAY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N       L  +++                +  +P    + I   +     LAL   P
Sbjct: 43  L-NEKNDFLALFCSESFNKNYPEYCKKGWEERIYILPDNFFNDISELKTPIGILALIEIP 101

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 +   +  + + LD V DP N+G ILR++ A    GI  +++ +   S    +++
Sbjct: 102 QNDSYPNHFHD-GMYLFLDKVQDPGNLGTILRTSQALGHKGIFLSEQCADPWSPKTLRAS 160

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G    +P  +  ++++ +    S GF  +    +  + +     + K  LILG+EG+G+
Sbjct: 161 QGFQFQLPIYQNVDISNLI----SHGFSFVVADLNG-QSVFDYNFSHKTILILGSEGQGV 215

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             K ++ A     L M   +++LNV+ +AA+  Y   N F +
Sbjct: 216 TTKLKDIAHDEISLPMMNNVESLNVAVSAAIIGYQFLNQFNR 257


>gi|22124024|ref|NP_667447.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis KIM 10]
 gi|45439903|ref|NP_991442.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594392|ref|YP_068583.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
 gi|108809496|ref|YP_653412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Antiqua]
 gi|108813973|ref|YP_649740.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Nepal516]
 gi|145601108|ref|YP_001165184.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Pestoides F]
 gi|150260899|ref|ZP_01917627.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           CA88-4125]
 gi|153947104|ref|YP_001399039.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 31758]
 gi|162419568|ref|YP_001604683.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
 gi|165926178|ref|ZP_02222010.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936350|ref|ZP_02224919.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011464|ref|ZP_02232362.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213686|ref|ZP_02239721.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402131|ref|ZP_02307608.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419397|ref|ZP_02311150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426644|ref|ZP_02318397.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468213|ref|ZP_02332917.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis FV-1]
 gi|218927258|ref|YP_002345133.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis CO92]
 gi|229836148|ref|ZP_04456316.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           A]
 gi|229839886|ref|ZP_04460045.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229841968|ref|ZP_04462123.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904503|ref|ZP_04519614.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|270488503|ref|ZP_06205577.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
 gi|21956767|gb|AAM83698.1|AE013610_10 putative RNA methylase [Yersinia pestis KIM 10]
 gi|45434758|gb|AAS60319.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51587674|emb|CAH19274.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777621|gb|ABG20140.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|108781409|gb|ABG15467.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Antiqua]
 gi|115345869|emb|CAL18727.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis CO92]
 gi|145212804|gb|ABP42211.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           F]
 gi|149290307|gb|EDM40384.1| tRNA (guanosine-2'-O-)-methyltransferase [Yersinia pestis
           CA88-4125]
 gi|152958599|gb|ABS46060.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           IP 31758]
 gi|162352383|gb|ABX86331.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis Angola]
 gi|165915964|gb|EDR34572.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922038|gb|EDR39215.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989610|gb|EDR41911.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205088|gb|EDR49568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963391|gb|EDR59412.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048506|gb|EDR59914.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054333|gb|EDR64150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678621|gb|EEO74726.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Nepal516]
 gi|229690278|gb|EEO82332.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696252|gb|EEO86299.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706596|gb|EEO92602.1| tRNA (Guanosine-2'-O-)-methyltransferase [Yersinia pestis Pestoides
           A]
 gi|270337007|gb|EFA47784.1| RNA methyltransferase, TrmH family [Yersinia pestis KIM D27]
 gi|320013391|gb|ADV96962.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 230

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +      +   + +   +A+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRL--SAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++ DA+  + S   Q +    SD      +        +++G E  G+ P+   
Sbjct: 72  QVKTHPHIADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISPEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|299137092|ref|ZP_07030275.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
 gi|298601607|gb|EFI57762.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
          Length = 276

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 13/261 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLF-LYGVHTVSAALNNPS--RKIFQLLATKNALAR 80
            R +   K +++    S  +S P +L  + G + +  AL +      ++    ++  L R
Sbjct: 9   SRTNARVKALRAAC--SGKSSLPGDLLGIEGENLIGEALRSGIGFDTVYVREGSEGVLER 66

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
                     + V  +     +  V   A  QG+A          L A +NS++ +VL+ 
Sbjct: 67  ASLRGLQAQSWAV--LSKDVFESAVDT-ASPQGVAATFRIAQPLPLGAPKNSEVCLVLED 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N G ++RSA AFS   +  T       +    ++++G++  +P +R   L++   
Sbjct: 124 IQDPGNFGTLIRSAEAFSVSRVYVTPGTVNQWNPKAMRASAGSVFRMPVVRGP-LSEIKS 182

Query: 201 KMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            + + G +       S    P+ Q       AL++G EG GL     E A    H+    
Sbjct: 183 ALGAEGVRLYAAVARSSGATPVMQAKLLAPCALMIGNEGAGLSMTALELADEQVHIPCS- 241

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN + A +  +Y +   
Sbjct: 242 -VESLNAAIAGSTLMYESFRQ 261


>gi|257482400|ref|ZP_05636441.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 138

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 64/128 (50%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G +
Sbjct: 3   ADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTA 62

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +++  L Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L
Sbjct: 63  GEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCL 122

Query: 274 YITQNHFA 281
           +      +
Sbjct: 123 FEALRQRS 130


>gi|300725268|ref|YP_003714597.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631814|emb|CBJ92535.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 235

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L+ V+ PHN+ A++R+A A     I     +          SA+G+   +
Sbjct: 14  AMRQPDLTICLEEVHKPHNVSAVIRTADAIGIHQIHA--IWPDQSLRTQLSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S +  A+++  S G Q +    SD      Q        +I+G E KG+  +   
Sbjct: 72  QVQTHSTIQQAIEQFKSDGMQVLATHLSDKAVDFRQIDYTKPTCIIMGQEKKGISKQAVA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADHDIIIPMAGMVQSLNVSVASALILYEAQRQR 165


>gi|326566884|gb|EGE17023.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
 gi|326575114|gb|EGE25042.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
 gi|326576800|gb|EGE26707.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
          Length = 258

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 15/262 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +++ +++A A  + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRIIVSESATAHDEV 63

Query: 84  DANLPHPFP--VKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              L    P  +  +      +I    ++V     +    +   +L  +      ++LD 
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVS---VMAVIDIPHRSLPTISGD--CLILDG 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  NIG +LR+A A     +IT+   +   S    ++  GA   +       + + LQ
Sbjct: 119 LQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIAVDEILQ 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K+ +        SS + K +        IA +LG EG+G+R +    A     L  PG  
Sbjct: 179 KLKT---PLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQ 234

Query: 261 KALNVSNAAAVALYI--TQNHF 280
           ++LNV  A +V  Y    Q H+
Sbjct: 235 ESLNVGIAGSVCFYEMLRQRHY 256


>gi|242038529|ref|XP_002466659.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
 gi|241920513|gb|EER93657.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
          Length = 345

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 106/274 (38%), Gaps = 28/274 (10%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K        + +      L L G+  +          I  LL           +A 
Sbjct: 66  NPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCRFELDAIDYLLLMDGVEVP---EAL 122

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTL------DAVRN----SQL 134
                 V  V    + K+ G ++V   + +A+   P     L      DA+       + 
Sbjct: 123 REFSGDVVHVSAAVMKKVSGMQSVDSTEAIAVMHMPNHFRDLGSHEDGDALDGLLSYPKR 182

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGT- 241

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRPK 243
             D    M  +G + +    +S              L   + N+ + L+LG+EG GL  +
Sbjct: 242 WHDLHALMTKYGMKMMAGHPESSSDASKGIYSLSKELADSLLNESLCLVLGSEGNGLSAE 301

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 302 TLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334


>gi|111220928|ref|YP_711722.1| putative rRNA methylase [Frankia alni ACN14a]
 gi|111148460|emb|CAJ60131.1| Putative rRNA methylase [Frankia alni ACN14a]
          Length = 299

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 105/291 (36%), Gaps = 44/291 (15%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   ++ AL    R    +L +   L  +   A+LP
Sbjct: 13  DYVALTDVALRRRREPADGLFIAEGERVITRALRAGYRP-RSVLVSPARLGAVP--ADLP 69

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              PV       +  I G E VH+G LA           D +  ++ ++V + +    N+
Sbjct: 70  ADVPVYVAGADVLAAITGFE-VHRGALASMCRRPPLAPADVLAAARRVLVCEDIVSHTNL 128

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA     D ++ + R +        + + G +  +PY R+     AL  +   GF
Sbjct: 129 GAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPGALGLLRDAGF 188

Query: 208 QTIGLSSDSKKPLEQEIKND---------------------------------------K 228
             + L+  +      E                                           +
Sbjct: 189 TLLALTPAADAADLGEFAAQLATVDPVGSGPPGSGPPDSGTAAPGSTVDPADPAAGAPAR 248

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +AL+LG EG GL   TQ  AT+ A + M   + +LNV+  AA+A Y+    
Sbjct: 249 VALLLGTEGAGLSEPTQAAATARARIPMAHGVDSLNVAATAAIACYLLGRR 299


>gi|224023423|ref|ZP_03641789.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
 gi|224016645|gb|EEF74657.1| hypothetical protein BACCOPRO_00122 [Bacteroides coprophilus DSM
           18228]
          Length = 223

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 3/162 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                 R   L++VLD V   HNIGA+ R+A AF  D I      +      L K+A GA
Sbjct: 58  EEFKEARKIPLVVVLDQVRSLHNIGAVFRTADAFLVDKIYLCGITATPPHPELHKTALGA 117

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI--KNDKIALILGAEGKGL 240
              + +    N  DA+  +H  G+  + +   +    L+  I  K+ K A++ G E KG+
Sbjct: 118 EFTVDWKYFKNTQDAVNDLHKDGYVVLAIEQCEGSTMLDDLILEKDKKYAIVFGNEVKGV 177

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + +   +      +   G   +LNVS  A + L+       +
Sbjct: 178 QQEVVNSCDGCIEIPQYGTKHSLNVSVTAGIVLWECARRLIR 219


>gi|188577836|ref|YP_001914765.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522288|gb|ACD60233.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 240

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 8/231 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVG 106
           + LYG++ V A      + + +L  ++  + +        +      + V    + K+  
Sbjct: 1   MRLYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLAA 60

Query: 107 KEAVHQGLALET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             A H+G+  E       PL        +   L + LD V +PHN GA+LRS+  F   G
Sbjct: 61  S-AHHEGIVAEVLRVAPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVAG 119

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++     +   S   A+ A G  E +P +++ +   A+ ++   GF       D  + + 
Sbjct: 120 LLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVF 179

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                 ++  ++GAE +G+             +   G +++LNV++A AV 
Sbjct: 180 AAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 230


>gi|254457129|ref|ZP_05070557.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
 gi|207085921|gb|EDZ63205.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
          Length = 259

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 5/222 (2%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            V+  L++    +  +LATK          N      +  V    +  IVG +  H  + 
Sbjct: 38  VVNMLLDSEIE-VKSILATKEYYNEFSELINSKKIEKLFLVDKDEMQNIVGHKIHHNCMM 96

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
             T P    +L+A+ ++  +++LD +    N+G+I RSA A   D  +  ++        
Sbjct: 97  HGTRP-DETSLEALGDN--ILMLDAITSTENVGSIARSAAALGVDSYLLPRQSPHPYGRR 153

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
             + + G +  +      +++  +Q++   G++      +     L Q     K  L++G
Sbjct: 154 ALRVSMGYVSKLKVHIYEDISQTIQELKKDGYRIYAAEVTPDATLLSQVKSPQKWVLLMG 213

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            EGKG+  +  +    +  + M   +K+ NVS AA++ +Y  
Sbjct: 214 HEGKGISQEVLDICDEVLSIEMAPGVKSFNVSVAASIMMYQL 255


>gi|115454647|ref|NP_001050924.1| Os03g0685100 [Oryza sativa Japonica Group]
 gi|108710455|gb|ABF98250.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113549395|dbj|BAF12838.1| Os03g0685100 [Oryza sativa Japonica Group]
 gi|215765471|dbj|BAG87168.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 340

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 28/289 (9%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
            F  + +H       +   K        S +      + L G+  +    +     I  L
Sbjct: 48  PFRGEQNHKQVASVANPLVKHCVRLRLSSAYRRSCRRILLVGLIPILEMCSFEFSTIETL 107

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDA- 128
           L        L  +        V  V    + K+ G ++V   + +A+   P     LD+ 
Sbjct: 108 LLLDGI--ELPEELYGFSGNVVY-VSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSD 164

Query: 129 ---------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                    + +++ ++VLD + DP N+G ++RSA AF  DG+          +    ++
Sbjct: 165 QGGAVLDEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRA 224

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-----------KKPLEQEIKNDK 228
           A GA   +P +   N +D    M     + +    +S            K L   + ++ 
Sbjct: 225 ARGASLQLPVVS-GNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSES 283

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L+LG+EG GL   T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 284 VCLVLGSEGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQ 331


>gi|13174243|gb|AAK14417.1|AC087851_9 putative RNA methyltransferases [Oryza sativa Japonica Group]
 gi|222625582|gb|EEE59714.1| hypothetical protein OsJ_12143 [Oryza sativa Japonica Group]
          Length = 329

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 28/289 (9%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
            F  + +H       +   K        S +      + L G+  +    +     I  L
Sbjct: 37  PFRGEQNHKQVASVANPLVKHCVRLRLSSAYRRSCRRILLVGLIPILEMCSFEFSTIETL 96

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDA- 128
           L        L  +        V  V    + K+ G ++V   + +A+   P     LD+ 
Sbjct: 97  LLLDGI--ELPEELYGFSGNVVY-VSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSD 153

Query: 129 ---------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                    + +++ ++VLD + DP N+G ++RSA AF  DG+          +    ++
Sbjct: 154 QGGAVLDEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRA 213

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-----------KKPLEQEIKNDK 228
           A GA   +P +   N +D    M     + +    +S            K L   + ++ 
Sbjct: 214 ARGASLQLPVVS-GNWSDLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSES 272

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L+LG+EG GL   T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 273 VCLVLGSEGNGLSADTLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQ 320


>gi|218510308|ref|ZP_03508186.1| rRNA methylase protein [Rhizobium etli Brasil 5]
          Length = 218

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 4/190 (2%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAIL 151
           V  V  + I  I  ++   Q +         P  D   R  +  + LD V DP N+G I+
Sbjct: 25  VLEVSEKVIGSITRRD-NPQMVVGIFDQRWKPLKDIRPREGETWVALDRVRDPGNLGTII 83

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A    G+I     +   S    ++  G++  +P  R +   + L    S G   + 
Sbjct: 84  RTADAAGASGVILVGEATDPFSLETVRATMGSVFAVPVARAT-PEEFLAWRKSAGVSVVA 142

Query: 212 LSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
                             + L++G E  GL  +  + A ++A +   G   +LN++ A A
Sbjct: 143 THLAGAVDYRTIDYRKKPVVLLMGNEQSGLPEQLAKEADALARIPQQGRADSLNLAVATA 202

Query: 271 VALYITQNHF 280
           V L+  + H 
Sbjct: 203 VMLFEARRHL 212


>gi|218193529|gb|EEC75956.1| hypothetical protein OsI_13060 [Oryza sativa Indica Group]
          Length = 329

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 113/289 (39%), Gaps = 28/289 (9%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
            F  + +H       +   K        S +      + L G+  +    +     I  L
Sbjct: 37  PFRGEQNHKQVASVANPLVKHCVRLRLSSVYRRSCRRILLVGLIPILEMCSFEFSTIETL 96

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDA- 128
           L        L  +        V  V    + K+ G ++V   + +A+   P     LD+ 
Sbjct: 97  LLLDGI--ELPEELYGFSGNVVY-VSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSD 153

Query: 129 ---------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                    + +++ ++VLD + DP N+G ++RSA AF  DG+          +    ++
Sbjct: 154 QGGAVLDEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRA 213

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-----------KKPLEQEIKNDK 228
           A GA   +P +   N +D    M     + +    +S            K L   + ++ 
Sbjct: 214 ARGASLQLPVVS-GNWSDLHALMAKPDMKMLAGHPESSSNGSERTHVLSKELADSLMSES 272

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + L+LG+EG GL  +T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 273 VCLVLGSEGNGLSAETLQAC-ELVNIPMQGTFESLNVSVAGGIFLFMLQ 320


>gi|114799377|ref|YP_761548.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114739551|gb|ABI77676.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 271

 Score =  170 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 93/260 (35%), Gaps = 6/260 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++S  ++ +  ++       G   VS  L    +    ++A   A      D 
Sbjct: 12  SNPLIKALKSL-ERKKERAETGLFLAEGARIVSEGLARGWQPETVIIAADMAERPQISDL 70

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLL-SPTLDAVRNSQLLMVLDHV 141
                     V   P + + KI  K+     +A      L   +L     + L + L  V
Sbjct: 71  ARAAAKAGARVVMAPERLMTKITQKDNAQSVVAAFRQRHLGVESLPKPAGTPLYIALYEV 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ILR+A      G+I         S    +++ G++  +P+   ++       
Sbjct: 131 RDPGNLGTILRTADCAGVSGVILIGTCCDPYSFEAVRASMGSVFDVPFA-HTDFDAFNTW 189

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G      S +     +         +++G E  GL    +    +++ + M G   
Sbjct: 190 RKGEGMSLTAASVNGTVRHDGADFTGGSIILMGNEQAGLPDWVEAACDTLSLIPMRGGAD 249

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN++ A+A+ +Y       
Sbjct: 250 SLNLAQASALMIYEAWRQRG 269


>gi|160946411|ref|ZP_02093620.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
 gi|158447527|gb|EDP24522.1| hypothetical protein PEPMIC_00371 [Parvimonas micra ATCC 33270]
          Length = 261

 Score =  170 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 121/252 (48%), Gaps = 13/252 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++ YK  +S   K ++  + +   L G   +S AL N +  I  ++ T+  +   ++
Sbjct: 17  SKDNKKYKLFKSLYLK-KNRDKYKLFLLEGKKLLSEAL-NENLDIENIICTEKFVENFEF 74

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
             N      + +   + + K + +    +G+      +    +    +S+ ++ L++V+D
Sbjct: 75  KENFLDKVIILS---EKLFKNLTELTNSEGVITIVNYIEEKKI----SSKNIICLENVSD 127

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R+A AF  + I+T        ++ + ++  GA+     I      + ++++ 
Sbjct: 128 PGNFGTIIRTANAFGINDILTIN-CVDKYNSKVLRATMGAIFRTNIIDCK--IEKIKELQ 184

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           S G++ I  + S + K LE+   + K  +++G E  G+  +  + + +   + M   +++
Sbjct: 185 SGGYRLISTTLSKNSKFLEEFTFDGKNIVVMGNEANGISAEMLKISNNHLKIDMDNSMES 244

Query: 263 LNVSNAAAVALY 274
           LNVS AAA+ +Y
Sbjct: 245 LNVSIAAAIIMY 256


>gi|315054983|ref|XP_003176866.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
 gi|311338712|gb|EFQ97914.1| rRNA methyltransferase [Arthroderma gypseum CBS 118893]
          Length = 565

 Score =  170 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 119/321 (37%), Gaps = 87/321 (27%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFP------- 92
           S P + F+YG   V+AA+    RK+  L      +++ L    W+               
Sbjct: 223 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRLGEPKWEQPEIRSIAKYASLAG 282

Query: 93  --VKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPT---------------------- 125
             VK V      T+DK+ GK   H G+ LE +PL  P                       
Sbjct: 283 AQVKHVTGPWKTTLDKMTGKR-PHNGMVLEASPLPKPPVLGFQTVVSKSNSHFLAQLAPQ 341

Query: 126 ---------------LDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                           D+ R           ++LD + DP N+GAI RSA  F  D I+ 
Sbjct: 342 PEEQAAVNGTDGHIQFDSRRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGADAIVF 401

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK------- 217
           + + S   S V+ K+A+GA E IP + + +++  +    + G++     +          
Sbjct: 402 SSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQTNGWKFFAADAPDATLANDYT 461

Query: 218 ---------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GI 259
                      L  E+      L+LG EG GL+ K +  A     +              
Sbjct: 462 RKIPVTKSLDSLSSELTKAPCVLMLGGEGSGLQQKIKNRADMFVTIPGAYSDNIRDDTAG 521

Query: 260 IKALNVSNAAAVAL--YITQN 278
           + +LNVS A+A+    ++++ 
Sbjct: 522 VSSLNVSVASALLCEAFLSRR 542


>gi|238750786|ref|ZP_04612284.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
 gi|238710930|gb|EEQ03150.1| tRNA guanosine-2'-O-methyltransferase [Yersinia rohdei ATCC 43380]
          Length = 230

 Score =  170 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +     +  +E      SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHA--IWPTTEMYTRLSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                +++TDA+  + S G Q +    SD      +        +++G E  G+  +   
Sbjct: 72  QVKTHAHITDAITYLKSQGMQILATHLSDKAVDFREIDYTLPTCILMGQEKTGISEEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADKDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|261250548|ref|ZP_05943123.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260939117|gb|EEX95104.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 227

 Score =  170 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P E   L+ +++GA   +  
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADATGIHKV---HAVWPHEMRTLSHTSAGARNWVDV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               N+ DA+ ++ + G Q +  + SD+     +       A+ILG+E  G   K ++ A
Sbjct: 73  ETHDNIEDAIAELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASEKAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIVPMVGMVQSLNVSVASAVILYEAQRQR 164


>gi|319440343|ref|ZP_07989499.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 299

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 103/260 (39%), Gaps = 25/260 (9%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-----LPHPFPV 93
           ++    +       G + V +AL + S  +  L  T++AL     + +           V
Sbjct: 41  RAAVRRKTGRFLAEGSNAVMSALRHGS--VVDLFLTEDALDSFGRELDGLTGDDTRGVHV 98

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
             +  +    +          AL  + L    LD V          +L V     +P N 
Sbjct: 99  SLITDRAAHALSESVTSTGLFALCVSQL--TDLDGVLASAGAGTPSVLAVPVETAEPGNA 156

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA++R A A    G+I        +     +S++G+L H+P  R +++ + ++++H  G+
Sbjct: 157 GALIRVADATGAAGVIFAGETVDPQGGKAVRSSAGSLFHLPVSRHTSIPEVVERLHEQGY 216

Query: 208 QTIGLSSDSKKPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
             +  S D    L++          +   ++A + G E  GL    Q+ A     + M G
Sbjct: 217 VVLATSGDGDVSLDEASIAPAGETPLLGQRVAWLFGNEAHGLGD-WQDLADVRVSIPMQG 275

Query: 259 IIKALNVSNAAAVALYITQN 278
           + ++ N+  AAAV LY T  
Sbjct: 276 LAESFNLVTAAAVCLYETAR 295


>gi|269795534|ref|YP_003314989.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269097719|gb|ACZ22155.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 280

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 102/269 (37%), Gaps = 25/269 (9%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S + +    S+     + G   V  A+ +    +  +  T  +  R          
Sbjct: 13  KMVRSLSGRP-ARSRTGRFLVEGPQGVREAVRHRPEAVRDVYLTAESRDRYREIVADAEA 71

Query: 91  FPVK--TVPPQTIDKIVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHV 141
             V      P+ I+ +       QG+            P  +      R  +L+ VL +V
Sbjct: 72  ARVYFHVTTPEVIEAMSPDS---QGVLAVLDLPAPGDGPEAALDAALARAPRLVAVLSNV 128

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N GA++R+A A   D ++ T       S  + +S +G+L H+P +    L   +  
Sbjct: 129 RDPGNAGAVIRAADAAGADLVVLTTNSVDIHSPKVVRSTAGSLFHLPVVTGVPLDQVVAA 188

Query: 202 MHSWGFQTIGLSSDSKKPLEQE------------IKNDKIALILGAEGKGLRPKTQETAT 249
           + + G QT+         L++                   A + G E  GL    +  A 
Sbjct: 189 LSAHGLQTLAADGVGTHDLDELLDVAGSAPEGVPDLAAHSAWVFGNEAWGLTEDERGLAD 248

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++  + + G+ ++LN++ AA V LY +  
Sbjct: 249 AVVRVPIRGLAESLNLATAATVCLYASSR 277


>gi|260460492|ref|ZP_05808743.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259033597|gb|EEW34857.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 285

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 88/256 (34%), Gaps = 6/256 (2%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLDW 83
           +   K +++   K +   Q       G+  V  AL+   +    + A             
Sbjct: 20  NPLVKDIKALALK-KFRDQQNAFMAEGLKLVIDALDLGWQIRTLVFAKAGRGNPAVGKVA 78

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     V  V  + +  I  ++     + + +   L+       N  + + LD V D
Sbjct: 79  ARTVAAGGTVLEVSEKVLVAITRRDNPQMVVGVFSQKFLALKDVHADNGDVWVALDRVRD 138

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+  A    GII     +   S    ++  G++  +P  + +     L    
Sbjct: 139 PGNLGTVIRTVDAVGAKGIILVGDTTDPFSVETVRATMGSIFAVPIAKAT-TEAFLAWRG 197

Query: 204 SWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           ++     G              +   + L++G E +GL      +   +  +   G   +
Sbjct: 198 AFSGLVAGTHLKGAVDYRSVDFSRGPVLLMMGNEQQGLPESLAASCDRLLRIPQAGRADS 257

Query: 263 LNVSNAAAVALYITQN 278
           LN++ A  + L+  + 
Sbjct: 258 LNLAVATGIMLFEIRR 273


>gi|170026386|ref|YP_001722891.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186893379|ref|YP_001870491.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           PB1/+]
 gi|294502145|ref|YP_003566207.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
 gi|169752920|gb|ACA70438.1| tRNA guanosine-2'-O-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186696405|gb|ACC87034.1| tRNA/rRNA methyltransferase (SpoU) [Yersinia pseudotuberculosis
           PB1/+]
 gi|262360224|gb|ACY56945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D106004]
 gi|262364170|gb|ACY60727.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis D182038]
 gi|294352604|gb|ADE62945.1| tRNA (guanosine-2-O-)-methyltransferase [Yersinia pestis Z176003]
          Length = 219

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +      +   + +   +A+G+   +
Sbjct: 3   ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRL--SAAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++ DA+  + S   Q +    SD      +        +++G E  G+ P+   
Sbjct: 61  QVKTHPHIADAIAYLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISPEALA 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 121 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|207723369|ref|YP_002253768.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588568|emb|CAQ35531.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 245

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 10/250 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           M+  +  ++   +     L G+H V+A L+       Q L ++  LA  +    L    P
Sbjct: 1   MKVLSGSTQQRRRAGQSVLDGIHLVAAYLDAGHTP-AQCLVSERHLAHPEVAPLLARVDP 59

Query: 93  --VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  +      ++     V  G+ L             R     ++LD + D  N+G+I
Sbjct: 60  QHVILLADSLFAQLT---TVVNGIDLMAVIDTPEGHLPHRIEHDCVILDGIQDAGNVGSI 116

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR A A     +  T   + + SA   ++  GA  H+  +          ++H      +
Sbjct: 117 LRCAAAAGVRDVFMTTGCAFAWSAKTLRAGMGAHFHLNIVEHCTFESMHARLH---VPLL 173

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             SS ++  +        +  + G EG G+  +     T+   +  PG +++LNV+ AAA
Sbjct: 174 ATSSHARHAVFDVPLGKPVGWVFGNEGAGVSEQWLS-VTTPISIPQPGGMESLNVAAAAA 232

Query: 271 VALYITQNHF 280
           + L+      
Sbjct: 233 ICLFEAVRQR 242


>gi|225011172|ref|ZP_03701633.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
 gi|225004682|gb|EEG42643.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
          Length = 273

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 99/269 (36%), Gaps = 9/269 (3%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           H       +   K+M    +KSR  +Q +   + GV  +  A++     I +       L
Sbjct: 4   HPVIQSAQNPKVKEMLRLKEKSRARTQAQKFIIEGVRELELAIDCQYN-ILEFYYEPTIL 62

Query: 79  AR------LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRN 131
           +       L   A  P       +     +K+  + +    +A   T       L     
Sbjct: 63  SADALSGILKKLAAQPIAVSPTILSGAAFEKLAQRSSTEGIIAVAATKSHALSALKVTAK 122

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L +V +    P NIGA+LR+A A   D +I     +   +  + +S+ G +  +    
Sbjct: 123 NPLYLVAEAPEKPGNIGALLRTADAAGIDAVIIANPKTDLYNPNVIRSSVGGVFTVAVAM 182

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            ++  + L  + +        +  + KP  +       A+++G E  GL     E +   
Sbjct: 183 GTS-KEVLDFLQAAKANVYAAALQASKPHTEVSYTGTTAIVVGTEATGLEAIWLEQSNQN 241

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G I ++NVS AA + ++      
Sbjct: 242 IRIPMRGKIDSMNVSVAAGILIFEAIRQR 270


>gi|323497036|ref|ZP_08102059.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
           21326]
 gi|323317880|gb|EGA70868.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sinaloensis DSM
           21326]
          Length = 227

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     I       P+E   L+ +++GA   +  
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADATGIHKI---HAVWPNEMRTLSHTSAGARNWVDV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++ +A+ ++ S G Q +  + SDS     Q       A+ILG+E  G   + ++ A
Sbjct: 73  ETHDSIEEAISELKSQGMQVLVTNLSDSAVDFRQIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIVPMVGMVQSLNVSVASAVILYEAQRQR 164


>gi|170077725|ref|YP_001734363.1| rRNA methylase [Synechococcus sp. PCC 7002]
 gi|169885394|gb|ACA99107.1| rRNA methylase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 262

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 100/255 (39%), Gaps = 4/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++  +Q  R   +   L L G + + AA+         +L T     +    A
Sbjct: 6   QNPLVKEIRKLHQ-GRERQKQGRLLLEGTNLIEAAI-AKGFSFQTVLFTAAWQTKYPALA 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +  +      V  + + K+        G+       L       +  QL + ++ + DP 
Sbjct: 64  SQLNGDRQTLVSEEVLQKVA-TTVNPDGIVATLDQALISQT-PPQTLQLGVAVERLQDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A A + DG++ +       +  + +++ GA      + I    + LQ+  + 
Sbjct: 122 NLGTIIRTATATTVDGLLLSHDSVNPSNPKVLRASVGAWFQTTPVVIPTFAEQLQRYRAQ 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G Q +     + K            ++LG EG GL P     A     + M   +++LNV
Sbjct: 182 GVQIVATLPQATKTYWDVDWRQPSLILLGNEGAGLSPAIASLANETVQIPMGPGVESLNV 241

Query: 266 SNAAAVALYITQNHF 280
           + A A+ LY  +   
Sbjct: 242 AIACALMLYEARRQR 256


>gi|325068620|ref|ZP_08127293.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
          Length = 286

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 23/258 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     + R  +Q           ++ A+         L+A ++        A+  
Sbjct: 15  DYTRLTDVALRRRLETQRGLYMAESSKVITRAVAAGHAPRSFLMAPRHLEEMRPVIASAA 74

Query: 89  H--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQL 134
                      PV   P + ++ I G       LA    P L+   + +        ++ 
Sbjct: 75  GCAGSDDGGEVPVFVAPEEVLESITGFHLHRGALAAMNRPALAGVPELLSSARGGAGARR 134

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L+ + D  N+GA  RSA A   D ++ T R +        + + G +  +P+ RI  
Sbjct: 135 VAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVPWTRIER 194

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQE 246
              A+ ++H+ GF    L+ SD+   L++          + ++A++LG EG GL  +T  
Sbjct: 195 WP-AMDELHAQGFTVAALALSDTSVALDEFAASAACTGVDSRVAVVLGTEGDGLSHRTIT 253

Query: 247 TATSMAHLHMPGIIKALN 264
            A  +  + M G + +LN
Sbjct: 254 AADEVVRIPMAGGVDSLN 271


>gi|313678222|ref|YP_004055962.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
 gi|312950379|gb|ADR24974.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
          Length = 243

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 108/272 (39%), Gaps = 39/272 (14%)

Query: 9   SEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI 68
           +++I S ++    +LR+   D                 E   + G H V   L      +
Sbjct: 2   NQRITSTQNPKIKQLRKIFND--------------KNSEFFIVEGYHLVEEVLK--ENLV 45

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            +L    +  A+ +             V    +  I   +     +AL      +  L  
Sbjct: 46  IELYELDSKTAKYENSI---------IVSDNVLKAITKTKTPEGVVALCRKKSNTSEL-- 94

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 ++ LD+V DP N+G I+R+A +F+ D +++        +  + +S+ GAL  + 
Sbjct: 95  ---GNRVVFLDNVQDPGNVGTIIRAAKSFNFDTVVS---NVNFYNDKIVRSSQGALFTVN 148

Query: 189 YIR--ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK-NDKIALILGAEGKGLRPKT 244
            +     NL   L+K    GF+    S S +  P+ +    N+KI +I G EG G    +
Sbjct: 149 LVNYAYDNLHSVLKKYKQNGFKIYCTSLSKNSVPINKISFENEKIVIIFGNEGSGASETS 208

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            + A  + ++ +    ++LNV+  A + LY  
Sbjct: 209 IKIADKLVYVPI--DFESLNVAVCAGIVLYEA 238


>gi|304439586|ref|ZP_07399490.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371898|gb|EFM25500.1| 23S rRNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 252

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 96/276 (34%), Gaps = 33/276 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSA 59
           M +I  ++++K    +     K R                      ENLFL  G   +  
Sbjct: 6   MEIIKSRQNKKAKYYRSLLQKKYR--------------------IKENLFLAEGAVVIRE 45

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL+      +  +  K     +          P      +  + +       QG+     
Sbjct: 46  ALDF-VDPKYVAIEDKKDFGEIINLLE-ERKIPYDIYDREVFETLSDT-KTPQGI---IG 99

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                           + LD V DP NIG I+R++ AF  DG++ +   +   S  + +S
Sbjct: 100 YFEVENKTFEPKPGKYLYLDGVKDPGNIGTIIRTSEAFGIDGVLLSSECAELYSPKVVRS 159

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
              ++         NL D        GF+ I      K   E+   +D   +++G+E +G
Sbjct: 160 TMASIFRTKVYSDINLMDI-----RNGFKIICADLKGKNIREKTDWDD-TIVVIGSEAQG 213

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  +  E       + M   I +LN + AA++ +Y 
Sbjct: 214 VSKEILEICDEAVLIPMDKNIDSLNAAVAASLFMYE 249


>gi|163758758|ref|ZP_02165845.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
 gi|162284048|gb|EDQ34332.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
           DFL-43]
          Length = 289

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 22/260 (8%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNN-----------PSRKIFQLLATKNALARL-DWDAN 86
           + R  +   + F+     V  AL +               I ++L  +N +  L D    
Sbjct: 29  RDRDLAGRGDRFIAEGRVVLQALTDVLDDAGSGRGEARFVIEKVLFLENRIEGLGDLIDR 88

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL----DAVRNSQLLMVLDHVN 142
           L    PV     + +D  VG  A+H+G+      L  P+L    + + +  L++V   + 
Sbjct: 89  LDADCPVYVAGREVLDAAVGF-AMHRGILALGRHLPPPSLGGFLEGLPDQALVVVACGIA 147

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +  N+G I R+A  F  D ++  +           + + GA   +P+ R  ++   + ++
Sbjct: 148 NHDNVGGIFRNAGVFGADAVVLDQSCCDPLYRKAIRVSVGAALRVPFCRGGSILALVGEL 207

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            S GF+ +GLS    + L +     +  L+LG EG+GL  +    A +   +     + +
Sbjct: 208 VSHGFEVVGLSPRGAEELSRFQPGRRQVLLLGTEGEGLPEELL-NALATLRIEQAPGLDS 266

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LNV+  + +AL+    H AK
Sbjct: 267 LNVATTSGIALW----HIAK 282


>gi|237738319|ref|ZP_04568800.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420199|gb|EEO35246.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 255

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 89/209 (42%), Gaps = 6/209 (2%)

Query: 71  LLATKNALARLDWDANLPHPFPV-KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           L+  K      +        F   K V    I K +  +   QG+ L          +  
Sbjct: 46  LIILKENFEDFENITTKLERFDCRKIVVNDKIFKDLTSQENSQGVILV---YPYCETNIG 102

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + +  ++VLD + DP N+G I+R+A A     II TK      +    +S+ G++ ++  
Sbjct: 103 KINNNIIVLDKIQDPGNLGTIIRAADAAGFKDIILTKGSVDCYNEKCVRSSMGSIFNMNI 162

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
           + +  L   +Q +    ++ +  + ++          ++K A+I G+EG G+     + A
Sbjct: 163 VYMEEL-QLIQFLKEKKYKFLVTALENNSIEYTDITLSEKNAIIFGSEGNGVSDNFLKVA 221

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + + G  ++LNV+ A+ + LY  +
Sbjct: 222 DETVIIPIYGSAESLNVAMASGIILYKVR 250


>gi|320449724|ref|YP_004201820.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
 gi|320149893|gb|ADW21271.1| tRNA guanosine-2'-O-methyltransferase [Thermus scotoductus SA-01]
          Length = 191

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--- 173
           E        +   R   L ++L++V+ PHN+ AILR+  A         + ++ + +   
Sbjct: 3   EARRRRIEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGI-----LEAHAVNPTGGV 57

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALI 232
               +++ G+ + +      ++ +A+  +   GF+    +  +  +   +       A++
Sbjct: 58  PTFNETSGGSHKWVYLRVHPSIQEAISFLKEKGFRVYATALREDARDFREVDYTQPTAIL 117

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LGAE  G+  +T   +     + M G++++LNVS AAAV L+  Q    K
Sbjct: 118 LGAEKWGVSEETLALSHGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRLK 167


>gi|331643205|ref|ZP_08344340.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H736]
 gi|332278261|ref|ZP_08390674.1| conserved hypothetical protein [Shigella sp. D9]
 gi|331040003|gb|EGI12223.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H736]
 gi|332100613|gb|EGJ03959.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 349

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 274 YITQN 278
           +  QN
Sbjct: 343 WWRQN 347


>gi|331654044|ref|ZP_08355045.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M718]
 gi|331048893|gb|EGI20969.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M718]
          Length = 349

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 274 YITQN 278
           +  QN
Sbjct: 343 WWRQN 347


>gi|325111023|ref|YP_004272091.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
 gi|324971291|gb|ADY62069.1| RNA methyltransferase, TrmH family, group 3 [Planctomyces
           brasiliensis DSM 5305]
          Length = 278

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 114/279 (40%), Gaps = 29/279 (10%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPE-----NLFLYGV--HTVSAALNNPSRKIFQLLATKNAL 78
           + +  KK ++  Q+     +PE     + +L     H++ AA+ +    + +L+      
Sbjct: 2   SDKSRKKSKTKLQRRPAARRPEPAVEESPWLELKNPHSIRAAMTHRPEDVKELVFLNEPA 61

Query: 79  A---RLDWDANLPHPFPVKTVPPQTIDK---------IVGKEAVHQGLALETAPLLSPTL 126
               RL   A      PV+ +      +            +   H       AP     L
Sbjct: 62  GLWNRLIEMAEAAK-IPVRHLGQTDEQQERARKQKKGKKEERKGH--SYALVAPRQPQKL 118

Query: 127 DAVRNSQ-------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           D +           + + LD + DPHN+GAI RSA  F   GII TK  S   +A +  +
Sbjct: 119 DDLLQLPVPEGRQGIWLALDSLQDPHNVGAIFRSASFFGVMGIIATKNSSAPINATVYDT 178

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           A+G +E IP+   +NL  AL+     G   +G S  ++K + +  +     +++G E KG
Sbjct: 179 AAGGVEDIPFAVETNLNRALKLSRRVGLWNLGTSEHAEKSVWEVDQKRPWMIVVGNEQKG 238

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           LR    E    +  +   G   +LNVS AA + L   + 
Sbjct: 239 LRRLVLEHCDQICQVPPLGETSSLNVSVAAGILLAALRR 277


>gi|89076058|ref|ZP_01162418.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89048210|gb|EAR53792.1| putative tRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 241

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A     +       P E+  VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV---HAVWPKENMKVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ +A+Q +   G Q +  + SD+             A+ILG E  G+  +  
Sbjct: 71  VELDTHDSMVEAVQTLKDQGMQVLATNLSDTAIDFRDVDYTKPTAVILGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 AMADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|331678578|ref|ZP_08379253.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H591]
 gi|331075038|gb|EGI46358.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H591]
          Length = 349

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 274 YITQN 278
           +  QN
Sbjct: 343 WWRQN 347


>gi|15832701|ref|NP_311474.1| methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|16130506|ref|NP_417076.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|74313144|ref|YP_311563.1| putative methyltransferase [Shigella sonnei Ss046]
 gi|82778009|ref|YP_404358.1| putative methyltransferase [Shigella dysenteriae Sd197]
 gi|89109387|ref|AP_003167.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|168752077|ref|ZP_02777099.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757754|ref|ZP_02782761.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168765025|ref|ZP_02790032.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768686|ref|ZP_02793693.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773490|ref|ZP_02798497.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778560|ref|ZP_02803567.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790382|ref|ZP_02815389.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC869]
 gi|168801700|ref|ZP_02826707.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC508]
 gi|170019136|ref|YP_001724090.1| putative methyltransferase [Escherichia coli ATCC 8739]
 gi|170082190|ref|YP_001731510.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683534|ref|YP_001744770.1| putative methyltransferase [Escherichia coli SMS-3-5]
 gi|187730537|ref|YP_001881368.1| putative methyltransferase [Shigella boydii CDC 3083-94]
 gi|188494800|ref|ZP_03002070.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
 gi|193064052|ref|ZP_03045137.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
 gi|193068401|ref|ZP_03049364.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
 gi|194429284|ref|ZP_03061811.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
 gi|194437701|ref|ZP_03069797.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
 gi|195936729|ref|ZP_03082111.1| putative methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208808899|ref|ZP_03251236.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814513|ref|ZP_03255842.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821234|ref|ZP_03261554.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397290|ref|YP_002272056.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920061|ref|YP_002294145.1| putative methyltransferase [Escherichia coli SE11]
 gi|217327232|ref|ZP_03443315.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555164|ref|YP_002388077.1| putative methyltransferase [Escherichia coli IAI1]
 gi|238901746|ref|YP_002927542.1| putative methyltransferase [Escherichia coli BW2952]
 gi|253772519|ref|YP_003035350.1| methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162556|ref|YP_003045664.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|254794532|ref|YP_003079369.1| putative methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|256017269|ref|ZP_05431134.1| putative methyltransferase [Shigella sp. D9]
 gi|256021732|ref|ZP_05435597.1| putative methyltransferase [Escherichia sp. 4_1_40B]
 gi|260845267|ref|YP_003223045.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260856675|ref|YP_003230566.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|260869267|ref|YP_003235669.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|261222983|ref|ZP_05937264.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259467|ref|ZP_05952000.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283857|ref|YP_003500675.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
 gi|293410997|ref|ZP_06654573.1| RNA methyltransferase [Escherichia coli B354]
 gi|293446936|ref|ZP_06663358.1| methyltransferase [Escherichia coli B088]
 gi|297517286|ref|ZP_06935672.1| putative methyltransferase [Escherichia coli OP50]
 gi|300817642|ref|ZP_07097857.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 107-1]
 gi|300904235|ref|ZP_07122094.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 84-1]
 gi|300920749|ref|ZP_07137155.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 115-1]
 gi|300927708|ref|ZP_07143276.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 187-1]
 gi|300951699|ref|ZP_07165519.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 116-1]
 gi|300958777|ref|ZP_07170890.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 175-1]
 gi|301021932|ref|ZP_07185891.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 196-1]
 gi|301302948|ref|ZP_07209076.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 124-1]
 gi|301648346|ref|ZP_07248086.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 146-1]
 gi|307139219|ref|ZP_07498575.1| putative methyltransferase [Escherichia coli H736]
 gi|309784597|ref|ZP_07679232.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|312973173|ref|ZP_07787345.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|84027943|sp|P0AGJ6|YFIF_ECO57 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
 gi|84027944|sp|P0AGJ5|YFIF_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YfiF
 gi|1788935|gb|AAC75634.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362918|dbj|BAB36870.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|73856621|gb|AAZ89328.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81242157|gb|ABB62867.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|85675469|dbj|BAA16467.2| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|169754064|gb|ACA76763.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli ATCC 8739]
 gi|169890025|gb|ACB03732.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521252|gb|ACB19430.1| RNA methyltransferase, TrmH family [Escherichia coli SMS-3-5]
 gi|187427529|gb|ACD06803.1| RNA methyltransferase, TrmH family [Shigella boydii CDC 3083-94]
 gi|187770634|gb|EDU34478.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013998|gb|EDU52120.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489999|gb|EDU65102.1| RNA methyltransferase, TrmH family [Escherichia coli 53638]
 gi|189003528|gb|EDU72514.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355309|gb|EDU73728.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362321|gb|EDU80740.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365089|gb|EDU83505.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370139|gb|EDU88555.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC869]
 gi|189376184|gb|EDU94600.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC508]
 gi|192929287|gb|EDV82896.1| RNA methyltransferase, TrmH family [Escherichia coli E22]
 gi|192958353|gb|EDV88793.1| RNA methyltransferase, TrmH family [Escherichia coli E110019]
 gi|194412692|gb|EDX28987.1| RNA methyltransferase, TrmH family [Escherichia coli B171]
 gi|194423507|gb|EDX39498.1| RNA methyltransferase, TrmH family [Escherichia coli 101-1]
 gi|208728700|gb|EDZ78301.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735790|gb|EDZ84477.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741357|gb|EDZ89039.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158690|gb|ACI36123.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762748|gb|ACI79686.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762750|gb|ACI79687.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762752|gb|ACI79688.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762754|gb|ACI79689.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209762756|gb|ACI79690.1| hypothetical protein ECs3447 [Escherichia coli]
 gi|209913320|dbj|BAG78394.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217319599|gb|EEC28024.1| RNA methyltransferase, TrmH family [Escherichia coli O157:H7 str.
           TW14588]
 gi|218361932|emb|CAQ99533.1| putative methyltransferase [Escherichia coli IAI1]
 gi|238862664|gb|ACR64662.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|242378181|emb|CAQ32956.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323563|gb|ACT28165.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974457|gb|ACT40128.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253978624|gb|ACT44294.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|254593932|gb|ACT73293.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|257755324|dbj|BAI26826.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257760414|dbj|BAI31911.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|257765623|dbj|BAI37118.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|260448339|gb|ACX38761.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli DH1]
 gi|290763730|gb|ADD57691.1| rRNA methylase [Escherichia coli O55:H7 str. CB9615]
 gi|291323766|gb|EFE63194.1| methyltransferase [Escherichia coli B088]
 gi|291471465|gb|EFF13949.1| RNA methyltransferase [Escherichia coli B354]
 gi|299881399|gb|EFI89610.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 196-1]
 gi|300314585|gb|EFJ64369.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 175-1]
 gi|300403768|gb|EFJ87306.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 84-1]
 gi|300412320|gb|EFJ95630.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 115-1]
 gi|300449061|gb|EFK12681.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 116-1]
 gi|300464261|gb|EFK27754.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 187-1]
 gi|300529630|gb|EFK50692.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 107-1]
 gi|300841883|gb|EFK69643.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 124-1]
 gi|301073622|gb|EFK88428.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 146-1]
 gi|308927494|gb|EFP72966.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 1617]
 gi|309702967|emb|CBJ02298.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
 gi|310331768|gb|EFP99003.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1827-70]
 gi|315137205|dbj|BAJ44364.1| rRNA methylase [Escherichia coli DH1]
 gi|315256609|gb|EFU36577.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 85-1]
 gi|315615843|gb|EFU96475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 3431]
 gi|320176115|gb|EFW51182.1| putative methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320188922|gb|EFW63581.1| putative methyltransferase [Escherichia coli O157:H7 str. EC1212]
 gi|320200145|gb|EFW74734.1| putative methyltransferase [Escherichia coli EC4100B]
 gi|320640830|gb|EFX10324.1| putative methyltransferase [Escherichia coli O157:H7 str. G5101]
 gi|320646176|gb|EFX15116.1| putative methyltransferase [Escherichia coli O157:H- str. 493-89]
 gi|320651471|gb|EFX19867.1| putative methyltransferase [Escherichia coli O157:H- str. H 2687]
 gi|320657073|gb|EFX24892.1| putative methyltransferase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662738|gb|EFX30077.1| putative methyltransferase [Escherichia coli O55:H7 str. USDA 5905]
 gi|323159154|gb|EFZ45145.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli E128010]
 gi|323167780|gb|EFZ53475.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella sonnei 53G]
 gi|323173100|gb|EFZ58731.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli LT-68]
 gi|323177288|gb|EFZ62876.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1180]
 gi|323184539|gb|EFZ69913.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 1357]
 gi|323936321|gb|EGB32612.1| SpoU rRNA methylase [Escherichia coli E1520]
 gi|323941156|gb|EGB37341.1| SpoU rRNA methylase [Escherichia coli E482]
 gi|323944581|gb|EGB40650.1| SpoU rRNA methylase [Escherichia coli H120]
 gi|323961196|gb|EGB56809.1| SpoU rRNA methylase [Escherichia coli H489]
 gi|323971092|gb|EGB66339.1| SpoU rRNA methylase [Escherichia coli TA007]
 gi|324020040|gb|EGB89259.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 117-3]
 gi|326340387|gb|EGD64191.1| putative methyltransferase [Escherichia coli O157:H7 str. 1125]
 gi|326345070|gb|EGD68814.1| putative methyltransferase [Escherichia coli O157:H7 str. 1044]
          Length = 345

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|157156261|ref|YP_001463905.1| putative methyltransferase [Escherichia coli E24377A]
 gi|191167962|ref|ZP_03029764.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
 gi|218696209|ref|YP_002403876.1| putative methyltransferase [Escherichia coli 55989]
 gi|300820739|ref|ZP_07100889.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 119-7]
 gi|300927042|ref|ZP_07142794.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 182-1]
 gi|301330317|ref|ZP_07222964.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 78-1]
 gi|307313848|ref|ZP_07593464.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
 gi|309794365|ref|ZP_07688788.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 145-7]
 gi|331669332|ref|ZP_08370180.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA271]
 gi|157078291|gb|ABV17999.1| RNA methyltransferase, TrmH family [Escherichia coli E24377A]
 gi|190901969|gb|EDV61716.1| RNA methyltransferase, TrmH family [Escherichia coli B7A]
 gi|218352941|emb|CAU98740.1| putative methyltransferase [Escherichia coli 55989]
 gi|300416926|gb|EFK00237.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 182-1]
 gi|300526492|gb|EFK47561.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 119-7]
 gi|300843651|gb|EFK71411.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 78-1]
 gi|306906349|gb|EFN36864.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli W]
 gi|308121821|gb|EFO59083.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 145-7]
 gi|315061900|gb|ADT76227.1| predicted methyltransferase [Escherichia coli W]
 gi|323377519|gb|ADX49787.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli KO11]
 gi|324118209|gb|EGC12105.1| SpoU rRNA methylase [Escherichia coli E1167]
 gi|331064526|gb|EGI36437.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA271]
          Length = 345

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|67523001|ref|XP_659561.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
 gi|40745966|gb|EAA65122.1| hypothetical protein AN1957.2 [Aspergillus nidulans FGSC A4]
 gi|259487316|tpe|CBF85894.1| TPA: RNA methyltransferase, TrmH family family (AFU_orthologue;
           AFUA_4G13450) [Aspergillus nidulans FGSC A4]
          Length = 617

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 131/354 (37%), Gaps = 85/354 (24%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           + + +  EK  S +  H+ K    + +  K   +   +   +   + F+YG   V AAL 
Sbjct: 149 VPTPEDEEKRRSRRIEHH-KPTEENPERVKQHVWVPPTIPYTTSASEFIYGTTAVEAALR 207

Query: 63  NPSRKIFQLLATK-------NALARLDWDANLPHPFPVKTVPPQT---IDKIVGKEAVHQ 112
              R++++L   +       +A  R+     L     VK    +    +DK+      H 
Sbjct: 208 CCKRQLYKLYLYQTAGEEELSADKRVLRKLALSKNVKVKLAFGEWNRLLDKMSA-GRPHN 266

Query: 113 GLALETAPLLSPTLDAVRNSQL-------------------------------------- 134
           G  LE +PL    + A+R  QL                                      
Sbjct: 267 GCVLEVSPLPRTPIQALRPVQLGDGEFKVELAPQTREEAKVNGTNDCIKINNSYTQQQIR 326

Query: 135 ---LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              +++L+ V D  N+G+I+RSA     D I+   R+S   S V  K+++GA E++  + 
Sbjct: 327 YPVVVLLEGVVDTGNLGSIIRSAYYLGVDAIVFAGRHSAPLSPVTIKASAGAAENMTLLD 386

Query: 192 ISNLTDALQKMHSWGFQTIGLSS--DSKKPL------------------EQEIKNDKIAL 231
           + N  D +++  + G++             L                  +  I      +
Sbjct: 387 VQNEVDFIKRSQANGWRFYAADVPKTGATYLEPGALQPPGSAVANEGHPDALIGQSPSVI 446

Query: 232 ILGAEGKGLRPKTQETATSMAHLH----MPG--------IIKALNVSNAAAVAL 273
           ++G EG GL    +  A S+  +     +PG         + +LNVS AAA+ +
Sbjct: 447 MMGYEGSGLSNHIKGRADSIVSIPGARLLPGVGAASDPARVDSLNVSVAAALLM 500


>gi|325496341|gb|EGC94200.1| putative methyltransferase [Escherichia fergusonii ECD227]
          Length = 370

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 126 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 185

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 186 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 244

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 245 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 303

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +    +K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 304 QGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 363

Query: 274 YITQN 278
           +  QN
Sbjct: 364 WWRQN 368


>gi|269956119|ref|YP_003325908.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304800|gb|ACZ30350.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 301

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 33/277 (11%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLP 88
           K++++ + +S        L + G   V  A+      +  +  T     R     DA   
Sbjct: 26  KQVRALSGRSARLRHA-QLLVEGPQGVREAVRCSPDAVRDVYLTPATAQRYAEIADAARA 84

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNSQ-------LLMVL 138
               V     + +  +       QG+        P L   L A+           L+ VL
Sbjct: 85  AGIRVHLGTHEVLAAMSPDA---QGVLAVVRTHTPTLDEALGALDGPDGGRRRSLLVAVL 141

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             V DP N G ++R+A A   D ++         +  + +S +G+L H+P +    L D 
Sbjct: 142 ATVRDPGNAGTVIRAADAAGADLVVLAGDSVDVHNPKVVRSTAGSLFHVPVVSGVPLADV 201

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQE-----------------IKNDKIALILGAEGKGLR 241
           +  +H  G   +         L+                         A + G E  GL 
Sbjct: 202 VDAVHERGLTVLAADGAGPHDLDDLLDVAGPSHAGERGAGTPDLAASTAWVFGNEAWGLP 261

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            K +E A ++  + + G  ++LN++ AA V LY +  
Sbjct: 262 EKDRELADAVVRVPIRGRAESLNLATAATVCLYASSR 298


>gi|215487924|ref|YP_002330355.1| putative methyltransferase [Escherichia coli O127:H6 str. E2348/69]
 gi|218690697|ref|YP_002398909.1| putative methyltransferase [Escherichia coli ED1a]
 gi|218701096|ref|YP_002408725.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218706086|ref|YP_002413605.1| putative methyltransferase [Escherichia coli UMN026]
 gi|293406024|ref|ZP_06650016.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298381824|ref|ZP_06991423.1| methyltransferase [Escherichia coli FVEC1302]
 gi|300895649|ref|ZP_07114249.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 198-1]
 gi|312965497|ref|ZP_07779729.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|331684231|ref|ZP_08384827.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H299]
 gi|215265996|emb|CAS10406.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218371082|emb|CAR18911.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218428261|emb|CAR09180.2| putative methyltransferase [Escherichia coli ED1a]
 gi|218433183|emb|CAR14081.1| putative methyltransferase [Escherichia coli UMN026]
 gi|284922533|emb|CBG35620.1| putative RNA methyltransferase [Escherichia coli 042]
 gi|291428232|gb|EFF01259.1| methyltransferase [Escherichia coli FVEC1412]
 gi|298279266|gb|EFI20780.1| methyltransferase [Escherichia coli FVEC1302]
 gi|300360409|gb|EFJ76279.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 198-1]
 gi|312289917|gb|EFR17805.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli 2362-75]
 gi|323188304|gb|EFZ73596.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli RN587/1]
 gi|331079183|gb|EGI50385.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           H299]
          Length = 345

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|332344456|gb|AEE57790.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli UMNK88]
          Length = 345

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|331674030|ref|ZP_08374793.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA280]
 gi|331069303|gb|EGI40695.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA280]
          Length = 349

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 274 YITQN 278
           +  QN
Sbjct: 343 WWRQN 347


>gi|329889553|ref|ZP_08267896.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328844854|gb|EGF94418.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 279

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 91/253 (35%), Gaps = 11/253 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K +++ + + +           G+  +  AL+     +  LL  ++A      D     
Sbjct: 23  IKAVRALHMR-KEREATSRFLAEGLKFIGEALDQGRAPVM-LLVGQDARPHPLLDRAKAE 80

Query: 90  PFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVND 143
                  +  V    ++KI  ++   Q   L     +   LDA++       + L+ V D
Sbjct: 81  TLKAGGQIIVVTHAILEKISRRD-NPQ-TVLGVFEQVYTPLDAIQPDAKPCWVALEQVRD 138

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+A +  C G+I         S    ++  G++  +   + S   + L    
Sbjct: 139 PGNLGTIIRTADSAGCGGVILIGDCVDPFSVEAVRATMGSVFAVTISKASR-EEFLAWRA 197

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            W    IG   D+              +++G E  GL  +          + M G   +L
Sbjct: 198 QWPGSVIGTRLDATHGYRDSPVRHPAIIMMGNEQAGLTDELAAACDLNVKIPMRGRADSL 257

Query: 264 NVSNAAAVALYIT 276
           N++ A  V +Y  
Sbjct: 258 NLAVATGVMVYAV 270


>gi|172037390|ref|YP_001803891.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
           ATCC 51142]
 gi|171698844|gb|ACB51825.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Cyanothece sp.
           ATCC 51142]
          Length = 219

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L ++ + V+ PHN+ AI+R+  A     + +       E    ++ + G+ + I
Sbjct: 16  EKRQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTD--EFPTFSQVSQGSDKWI 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 N+  A+  + S  F+       D              AL+LGAE  G+  +   
Sbjct: 74  FLHTHPNIQTAINHLKSKKFKIYAAHLTDKSVDYRDIDYTQPTALLLGAEKWGVSEEAAS 133

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  + M G++++LNVS AAAV L+  Q    +
Sbjct: 134 LVDGHIIIPMLGMVQSLNVSVAAAVILFEAQRQRLQ 169


>gi|307721996|ref|YP_003893136.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306980089|gb|ADN10124.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 262

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 85/224 (37%), Gaps = 4/224 (1%)

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           V   L     +I  +L T+           L +   +     + + KIVG +  H  +A 
Sbjct: 37  VVNLLLQSDIQIKSILVTQEYYDEFMPLVALKNIPKIYLTTKEEMGKIVGHKIHHNCMAH 96

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
              P     ++       +++LD++    N+G+I RSA A         K      +   
Sbjct: 97  GIRP---DDIELSSAGDRIIMLDNITSSENVGSIARSAAALGVKSYFLPKSSPHPFNRRA 153

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGA 235
            + + G    +      ++ + ++ + + G++      +    PL       K  LI+G 
Sbjct: 154 LRVSMGYAHMLGIHVYKDIFETIEALKAAGYRVYAAEVTPDSTPLSSLHVTSKWVLIMGH 213

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           EGKG+     +    +  + M   IK+ NV  AA++ +Y  +  
Sbjct: 214 EGKGISQDILDVCDEVVSIEMQEGIKSFNVGVAASIMMYAFRQR 257


>gi|288549949|ref|ZP_06390860.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317311|gb|EFC56249.1| putative tRNA/rRNA methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 199

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 8/198 (4%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVN 142
             +      V    + K  G E  H G+          T+            ++ L+ V 
Sbjct: 2   AANRKAYHVVDDAELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAEADDCVLALEDVG 60

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +PHN+GA++RS   F   G++     +  ES    ++A G  EH+  I   ++ DA+++ 
Sbjct: 61  NPHNLGAMMRSCAHFGVKGVLLQDA-ALLESGAAIRTAEGGAEHVQPITGDSVLDAIEQF 119

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G+  +  SS +  PL +     K+ L+LG E  GL      +A     +   G +++
Sbjct: 120 RKAGYSIVTTSSHAATPLFKATLPRKMVLVLGQERDGLSDAALSSADLSVSIDGTGNVES 179

Query: 263 LNVSNAAAVAL--YITQN 278
           LNVS A  V L  +  QN
Sbjct: 180 LNVSVATGVLLAEWWRQN 197


>gi|90581394|ref|ZP_01237189.1| putative tRNA methyltransferase [Vibrio angustum S14]
 gi|90437371|gb|EAS62567.1| putative tRNA methyltransferase [Vibrio angustum S14]
          Length = 241

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A     +       P E   VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV---HAVWPKEGMKVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ +A+Q +   G Q +  + SD+             A+ILG E  G+  +  
Sbjct: 71  VELDTHDSMVEAVQALKDQGMQVLATNLSDTAIDFRDVDYTKPTAIILGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 AMADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|30063982|ref|NP_838153.1| putative methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|30042238|gb|AAP17963.1| hypothetical protein S2816 [Shigella flexneri 2a str. 2457T]
 gi|281601993|gb|ADA74977.1| putative rRNA methylase [Shigella flexneri 2002017]
 gi|313648260|gb|EFS12704.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2a str. 2457T]
 gi|332753991|gb|EGJ84365.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 4343-70]
 gi|332755829|gb|EGJ86187.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2747-71]
 gi|332761975|gb|EGJ92248.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-671]
 gi|332766583|gb|EGJ96788.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri 2930-71]
 gi|333000441|gb|EGK20023.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri VA-6]
 gi|333000847|gb|EGK20419.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-218]
 gi|333001674|gb|EGK21241.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-272]
 gi|333015950|gb|EGK35285.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-227]
 gi|333016824|gb|EGK36150.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella flexneri K-304]
          Length = 345

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|331648328|ref|ZP_08349417.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M605]
 gi|331042877|gb|EGI15018.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           M605]
          Length = 349

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 105 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 164

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 165 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 223

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 224 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 282

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 283 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 342

Query: 274 YITQN 278
           +  QN
Sbjct: 343 WWRQN 347


>gi|315604404|ref|ZP_07879470.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314110|gb|EFU62161.1| possible RNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 293

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 97/261 (37%), Gaps = 19/261 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           +++     +S        + + G   V   + +  R +  +   ++              
Sbjct: 21  RRVSGLVGRSARIR-SGLMLVEGPQAVRELVRHRPRTLRDVYVREDLWDSSPELIASARA 79

Query: 91  FP--VKTVPPQTIDKIVGKEAVHQGLALETA--PLLSPTLDAVRNSQLLMVLDHVNDPHN 146
               V  V       +       QG+    +   L     DA     L+++     DP N
Sbjct: 80  ATRWVHPVSQAVSAALSSDA---QGVCAVASLDALRRELPDAEVGETLVVIAQG-RDPGN 135

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R+A AF    +I       + S  + +S++G++ H+P   + +  +A   +H  G
Sbjct: 136 VGTIIRTADAFGARAVIAVAGTVDAASPKVVRSSAGSVFHLPVCLVPSFAEARDLIHGRG 195

Query: 207 FQTIGLSSDSKKPLEQEIKNDKI----------ALILGAEGKGLRPKTQETATSMAHLHM 256
              +G S  S      ++  + I          A   G E +GL  +       +  + M
Sbjct: 196 AALLGTSGGSGSLDLADLLVEGISSRSRLSQSHAWAFGNEARGLSAEEMRACDGLVAIPM 255

Query: 257 PGIIKALNVSNAAAVALYITQ 277
            G  ++LNV++AAA  L+ +Q
Sbjct: 256 TGRAESLNVASAAATCLFASQ 276


>gi|301024868|ref|ZP_07188505.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 69-1]
 gi|300396399|gb|EFJ79937.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 69-1]
          Length = 345

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|170767257|ref|ZP_02901710.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
 gi|170123591|gb|EDS92522.1| RNA methyltransferase, TrmH family [Escherichia albertii TW07627]
          Length = 345

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +        ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVRQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +    +K+ L+LG E +GL    ++      ++   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTTLPEKMVLVLGQEYEGLPDAARDPNDVRVNIDGTGNVAGLNISVATGVLLAE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|89890886|ref|ZP_01202395.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
           bacterium BBFL7]
 gi|89517031|gb|EAS19689.1| methyltransferase, SpoU rRNA Methylase family [Flavobacteria
           bacterium BBFL7]
          Length = 271

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 111/279 (39%), Gaps = 21/279 (7%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQL 71
             +K  H A +R         +   +KS+   +     + G   +   L ++   ++ QL
Sbjct: 2   KHIKSPHNAIIR-------HAELLQRKSKARKKEGLFLIEGQREIM--LGDHGGFELQQL 52

Query: 72  LATKNALARLD--WDANLPHPF------PVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
           L   + L   +   D+++ H         V ++  +  +K+  +    +G+         
Sbjct: 53  LVCGSILLGTEDFQDSDVYHKININSTPEVISITQEVYEKLAYRTGT-EGVIAFAKAKSQ 111

Query: 124 PTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              D  +  + L+++ +    P N+GAILR+A A   D +I     +   +  + +S+ G
Sbjct: 112 QLQDLKLSKNPLILIAESPEKPGNLGAILRTADAAKVDAVIIANPVADLFNPNVVRSSVG 171

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +  +P    +  ++ +  + S        +  S +  +        A+ LG E  GL  
Sbjct: 172 CVFTVPTATGT-TSEVVDFLKSKNINLYAATLQSSERYDTMDYTSGSAIALGTEATGLTQ 230

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + ++ A     + M G I ++N+S +AA+ ++  +    
Sbjct: 231 EMRDAAMQNIIIPMSGTIDSMNLSVSAAILIFEAKRQRN 269


>gi|110642743|ref|YP_670473.1| putative methyltransferase [Escherichia coli 536]
 gi|191174012|ref|ZP_03035529.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
 gi|227887617|ref|ZP_04005422.1| methyltransferase [Escherichia coli 83972]
 gi|300935715|ref|ZP_07150684.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 21-1]
 gi|300974114|ref|ZP_07172464.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 200-1]
 gi|301047220|ref|ZP_07194312.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 185-1]
 gi|306814355|ref|ZP_07448517.1| putative methyltransferase [Escherichia coli NC101]
 gi|110344335|gb|ABG70572.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           536]
 gi|190905703|gb|EDV65325.1| RNA methyltransferase, TrmH family [Escherichia coli F11]
 gi|227835967|gb|EEJ46433.1| methyltransferase [Escherichia coli 83972]
 gi|281179630|dbj|BAI55960.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|300300897|gb|EFJ57282.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 185-1]
 gi|300308937|gb|EFJ63457.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 200-1]
 gi|300459104|gb|EFK22597.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 21-1]
 gi|305851749|gb|EFM52201.1| putative methyltransferase [Escherichia coli NC101]
 gi|307554600|gb|ADN47375.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli ABU
           83972]
 gi|320196417|gb|EFW71041.1| putative methyltransferase [Escherichia coli WV_060327]
 gi|324014374|gb|EGB83593.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 60-1]
 gi|330912349|gb|EGH40859.1| hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           AA86]
          Length = 345

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|159899036|ref|YP_001545283.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892075|gb|ABX05155.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 266

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 101/262 (38%), Gaps = 22/262 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++ ++++S + + R        ++ G   V+ A+N         L  +     L+  +  
Sbjct: 13  KEIRQLRSRDARDR----TGTYYIEGARIVAQAINAG-------LPLEIGAISLELLSRT 61

Query: 88  PHPFPVKTVPPQTIDKIV----------GKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
            H     +   +   ++V            +   QG+         P  +     +  + 
Sbjct: 62  EHSAGTVSALRKAAKQMVELSASAFAGISFKENLQGIGAVVKLQQEPLSNVQLTDRPWVA 121

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ V +P N+GAI+R+  A  C+G+I     +        +++ G+L  +  +R +   +
Sbjct: 122 LNGVGNPGNLGAIMRTCDAVGCEGLILIGDTTDPYHPAAIRASMGSLFALRMVRTT-FDE 180

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                 + G+  IG + D ++  +         L++G+E  GL    Q    ++  + M 
Sbjct: 181 FAAWKQTNGYHVIGTTPDVEQEYQTISYPSPAILLMGSERLGLSVGEQSVCDTLVRIPMA 240

Query: 258 GIIKALNVSNAAAVALYITQNH 279
           G   +LN+  A ++ LY     
Sbjct: 241 GTCDSLNLGVATSIVLYEMFRQ 262


>gi|330469164|ref|YP_004406907.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328812135|gb|AEB46307.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 274

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 7/258 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           RN R +++ ++         +     + GV  ++ A+ +  +    L  T  AL+    D
Sbjct: 8   RNAR-FQQWEALLHNRTKRQRRGEFLVQGVRPIAMAVEHGWQIRELLYNTSVALSGWARD 66

Query: 85  ANLPHPFPVKTVPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                      V  + + ++ GK + V + LA+   P           + L +V D    
Sbjct: 67  LLEKVRAEKIAVSRELMHELGGKADDVPELLAVVALPEDDLCRIPTGPTMLTVVFDRPTS 126

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK-- 201
           P NIG ++RSA AF   G+I T   +        ++++G+L  +P +R+      L    
Sbjct: 127 PGNIGTLVRSADAFGASGVIITGHAADVYDPKAVRASTGSLFALPVVRVPARQAVLSWGV 186

Query: 202 ---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                  G   +G        +          +++G E  GL    +E    +  + M G
Sbjct: 187 DVRAGGIGMNVVGTDELGALDVADYDFRQPTLIVIGNETTGLSSGWREACDQVVRIPMSG 246

Query: 259 IIKALNVSNAAAVALYIT 276
              +LN + AA V LY +
Sbjct: 247 AASSLNAATAATVVLYES 264


>gi|324008438|gb|EGB77657.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 57-2]
          Length = 345

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +   + K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLSAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|195646036|gb|ACG42486.1| spoU rRNA Methylase family protein [Zea mays]
          Length = 345

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 108/274 (39%), Gaps = 28/274 (10%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K        + +      L L G+  +    +     I  LL      A    +A 
Sbjct: 66  NPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCSFELEAIDYLLLLDGVEAP---EAL 122

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTL------DAVRN----SQL 134
                 +  V    + K+ G ++V   + +A+   P L   L      DA+       + 
Sbjct: 123 REFSGDILYVSAAVMKKVSGMQSVDSTEAVAVMHMPNLFRDLGSHQDGDALDGLFSYPKR 182

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 183 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGT- 241

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRPK 243
             D    +  +  + +    +S              L   + N+ + L+LG+EG GL  +
Sbjct: 242 WHDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEGNGLSAE 301

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 302 TLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 334


>gi|330447150|ref|ZP_08310800.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491341|dbj|GAA05297.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 241

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ P+N+ AI+R+A A     +       P E   VL+ +++GA   
Sbjct: 14  ATRQPDLTVCMEEVHKPNNVSAIIRTADAVGVHKV---HAVWPKEGMRVLSHTSAGARNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ +A+Q +   G Q +  + SD+     +       A+ILG E  G+  +  
Sbjct: 71  VELDTHDSMVEAVQALKDQGMQVLATNLSDTAIDFREVDYTKPTAIILGGEKNGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 SMADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|194432143|ref|ZP_03064432.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
 gi|194419672|gb|EDX35752.1| RNA methyltransferase, TrmH family [Shigella dysenteriae 1012]
 gi|332088093|gb|EGI93218.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 5216-82]
 gi|332089180|gb|EGI94287.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella dysenteriae 155-74]
          Length = 345

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EHI  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHIQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|222034286|emb|CAP77027.1| Uncharacterized tRNA/rRNA methyltransferase yfiF [Escherichia coli
           LF82]
 gi|312947153|gb|ADR27980.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
          Length = 345

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +        ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTSVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|255713698|ref|XP_002553131.1| KLTH0D09680p [Lachancea thermotolerans]
 gi|238934511|emb|CAR22693.1| KLTH0D09680p [Lachancea thermotolerans]
          Length = 393

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 118/318 (37%), Gaps = 60/318 (18%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           +K+  E+     D H +K R  +R                 P   +++G ++V + L   
Sbjct: 82  AKQNVEEASVQHDQHKSKFR--NRSVT--------GSLRPNPLMEYVHGTNSVISVLQAD 131

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            R  +  +    ++              ++      ++ I+   AVH  + LET PL  P
Sbjct: 132 KRDYYSRILYHASVTDEIRSLAKKRGAQLEMTDKHRLN-ILTNYAVHNNVVLETKPLQLP 190

Query: 125 TLDAV--------------------------------RNSQLLMVLDHVNDPHNIGAILR 152
            +  V                                +   L + LD V+DPHN+GAI+R
Sbjct: 191 EISQVGSCDPEGSTFAYDELFFDEASERRTSFIQKENKKFPLGLYLDEVSDPHNMGAIIR 250

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA     D +I ++R     S  ++K++SGA E +P   +    D   K    G+  +  
Sbjct: 251 SAYFLGVDFMIMSRRNCAPLSPTVSKTSSGATELLPIFTVDKPLDFFSKSQKEGWTFVSA 310

Query: 213 SSD-----------SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----P 257
                           + L   +K   + L++G EG+G+R   Q  +  +  +       
Sbjct: 311 GVSKQNKFAKNKKIEAQDLHGMLKELPVILVVGNEGEGVRTNLQMRSDFLVEIPQGRGAA 370

Query: 258 GI--IKALNVSNAAAVAL 273
           G   + +LNVS A A+ L
Sbjct: 371 GTRSVDSLNVSVATAILL 388


>gi|254411771|ref|ZP_05025547.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
 gi|196181493|gb|EDX76481.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
          Length = 306

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 3/198 (1%)

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           W    PH   V+ V    +  +         +    +  L+P         L +VL+ + 
Sbjct: 104 WQDATPHCQRVELVSASVLKAMATTVQPDGVVVTAKSSFLAPPQIPC---SLGLVLETLQ 160

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A   DG+  +      E+  + ++++G    +P    +NL+  +++ 
Sbjct: 161 DPGNLGTIIRTATAAGVDGLWLSPDSVDLENPKVLRASAGQWFRLPISANANLSQVVRQS 220

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            + G Q +     +     +        ++LG E  GL  +    A     + +   +++
Sbjct: 221 QAQGVQVVATLPKAPLSYWEIDWRIPTLILLGNEAAGLSSELTVLADQAVQIPLGQDVES 280

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV+ AAA+ +Y      
Sbjct: 281 LNVAIAAALIVYEALRQR 298


>gi|94310392|ref|YP_583602.1| tRNA/rRNA methyltransferase (SpoU) [Cupriavidus metallidurans CH34]
 gi|93354244|gb|ABF08333.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
          Length = 262

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 100/261 (38%), Gaps = 13/261 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA---ALNNPSRKIFQLLATKNALAR 80
            R++  +K++++    +    +     L G+H   A   AL  P+  +       +A  R
Sbjct: 6   SRDNALFKQLKALTGSTHQRRKAGQSVLDGIHLAQAYVAALGQPASCVVSERHYDHAEVR 65

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLD 139
              +        V  +      +I     V  G+  +      +  L A  ++  + +LD
Sbjct: 66  ALLEKIDSDKLVV--LADALFAQISS---VVNGVDLMLVIDTPAGHLPATIDTDCI-ILD 119

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+G+ILRSA A        TK  + + S    ++  GA  H+  +    L    
Sbjct: 120 GLQDAGNVGSILRSAAAAGIPHAFLTKGCAFAWSVKTLRAGMGANFHLNIVEHCTLEMLE 179

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            ++       +  SS +   +        +  ++G EG G+ P+     +    +  PG 
Sbjct: 180 SRLA---VPLLATSSHADAAVFDTDLRQPVGWVIGNEGGGVSPEWMAHVSRTVGIPQPGG 236

Query: 260 IKALNVSNAAAVALYITQNHF 280
           +++LNV+ A AV L+      
Sbjct: 237 LESLNVAAATAVCLFEAVRQR 257


>gi|150003712|ref|YP_001298456.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254881058|ref|ZP_05253768.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|319640065|ref|ZP_07994792.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|149932136|gb|ABR38834.1| tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|254833851|gb|EET14160.1| tRNA/rRNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|317388343|gb|EFV69195.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 178

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   T+D  + +    L +VLD V   HNIG++ R++ AF  D I      +   
Sbjct: 4   LKITELNRLTVDEFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKI 229
              + K+A GA   + +    N  DA+Q++H  GF  + +   +    L+  +   + K 
Sbjct: 64  HPEMHKTALGAEYSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A+++G E KG++ +          +   G   +LNVS    + L+   N   K
Sbjct: 124 AIVMGNEVKGVQQEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176


>gi|153873345|ref|ZP_02001957.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
 gi|152070192|gb|EDN68046.1| SpoU rRNA Methylase family [Beggiatoa sp. PS]
          Length = 141

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 65/132 (49%)

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A       II  K  +   ++++   A GA +++P I ++NL   L+ +   G   +
Sbjct: 1   MRTADVAGIQAIIVPKNNAVKLTSIVHAVACGAADNVPLIEVTNLARTLRWLQEQGVWIV 60

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   +S++ L +      +A + G+EG GLR  T+ET   +  +   G IK+LNVS A  
Sbjct: 61  GTDENSQESLFETNLTGPLAFVFGSEGTGLRRLTKETCDILVRIPSLGKIKSLNVSVATG 120

Query: 271 VALYITQNHFAK 282
           + LY       +
Sbjct: 121 ICLYEAVRQRLQ 132


>gi|320182094|gb|EFW56998.1| putative methyltransferase [Shigella boydii ATCC 9905]
          Length = 345

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EHI  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHIQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|149908558|ref|ZP_01897220.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36]
 gi|149808392|gb|EDM68329.1| tRNA (guanosine-2'-O-)-methyltransferase [Moritella sp. PE36]
          Length = 228

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+  A   + +     +S   + V   +A+G+   +  
Sbjct: 16  RQPDLTVCMESVHKPHNLAAVVRTCDAVGVNNVHAV--WSIRPTKVSGGTATGSQNWVKV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               N+  A++++ + G Q +  + SD+             A+++G E  G+  +    A
Sbjct: 74  HSHDNIAAAIKELKAQGMQVLATNLSDTAVDFRDIDYTKPTAILMGQEKTGISAEALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A A  LY  Q   
Sbjct: 134 DQDIIIPMVGMVQSLNVSVATATILYEAQRQR 165


>gi|329769782|ref|ZP_08261183.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
 gi|328838144|gb|EGF87762.1| hypothetical protein HMPREF0433_00947 [Gemella sanguinis M325]
          Length = 170

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+      + +  LD +     ++++D V DP N+G I+R+A AFS D II  K  +  
Sbjct: 4   QGVIA-VCKIKNKQLD-ISKYSRVLIIDQVQDPGNLGTIIRTADAFSFDCIILGKGTTSI 61

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIA 230
               + +S  G+  HI      ++ D + KM    F     S    + LEQ     +K+A
Sbjct: 62  YGQKVIRSTQGSNFHIDCFDNIDILDVIPKMED--FDLYATSLKGDRYLEQIDSVGEKVA 119

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +I G EG G+  +  +   ++  ++M G  ++LNV+ AA + ++
Sbjct: 120 VIFGNEGSGVSEEILDKVNNLLKINMTGQAESLNVAVAAGIVMH 163


>gi|256848250|ref|ZP_05553693.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714848|gb|EEU29826.1| tRNA/rRNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 289

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 10/198 (5%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNS-QLLMVLDHVNDPHNI 147
           P+  +  Q I ++ G   +   LA       P  +  L A+ N+   + +L+H+ +P NI
Sbjct: 88  PIYVINDQQIRQLAGYNLLRGALAAMYRVQRPSFADFLKALPNAHPRIAILEHIVNPANI 147

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHS 204
           GAI RSA A   DG+I T   +       ++ + G +  +P+  I      T+ +  +H 
Sbjct: 148 GAIFRSAAALGIDGVIVTSDSADPLYRRSSRVSMGTVFQVPWTYIDAKIWQTEGISLLHR 207

Query: 205 WGFQTIGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            G+QT  ++      +    Q +K DK+A+ILG+EG GL  +T   +     + M   + 
Sbjct: 208 LGYQTAAMALRHNTIRIDDPQLVKIDKLAVILGSEGPGLEERTIMQSDFSIKIPMATGVD 267

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A+A+A +   N 
Sbjct: 268 SLNVAAASALAFWELGNR 285


>gi|227875291|ref|ZP_03993433.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269978178|ref|ZP_06185128.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
           mulieris 28-1]
 gi|306818553|ref|ZP_07452276.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700888|ref|ZP_07637913.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|227844196|gb|EEJ54363.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269933687|gb|EEZ90271.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Mobiluncus
           mulieris 28-1]
 gi|304648726|gb|EFM46028.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307613883|gb|EFN93127.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 269

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 115/260 (44%), Gaps = 12/260 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFL--YGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           ++    KM+     SR +++ ++  +   G   +  AL      +  +  T+ A      
Sbjct: 9   DNPSSVKMRRIAGLSRRSARLKSSLIRIEGAQALREALRFAPDSVEDVYLTEAAGVSEPE 68

Query: 84  DANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             +L    PV    V  + + ++V + A  QG     +  + P L  +R  ++ ++L   
Sbjct: 69  LLSLVEAAPVHGHWVS-ERVARVVAEAA--QGWFATASFAVFPPLHELRG-RVALILPET 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LR A A     +   ++ +   S  + +++ G++ H+P  R S+L   +  
Sbjct: 125 QDPGNVGTMLRLADACGAGSVFMGEQSADVSSPKVIRASVGSVFHVPTPRFSDLAQLVST 184

Query: 202 MHSWGFQTIGLSSDSKK----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           +H   +   G + D+       +  +  + K+A ++G E  GL    +E    +  + M 
Sbjct: 185 LHESQWLVAGTALDAPLAWGFEVASQFADKKVAWMMGNEAHGLNAAQRELCDVLMAIPMF 244

Query: 258 GIIKALNVSNAAAVALYITQ 277
           G  ++ NVS AA +AL++T 
Sbjct: 245 GQAESFNVSQAATLALWMTA 264


>gi|29839982|ref|NP_829088.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
 gi|29834329|gb|AAP04966.1| spoU rRNA methylase family protein [Chlamydophila caviae GPIC]
          Length = 265

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 100/262 (38%), Gaps = 11/262 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K++ +  ++SR    P    L G   +  ALN+      ++   +N   +    
Sbjct: 6   KNNPKVKEVVAL-KQSRSRKGP-LFLLEGFREIQKALNSGYE-CERIFCGENVSEKEQSF 62

Query: 85  ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVL 138
            N     P++ +    + + K+  KE  H               + +          +++
Sbjct: 63  LNRIQKTPLEKIYCSEEILSKLSYKE-HHDNFIAVMKKRWWSREEFLGQKKNPLPFYLII 121

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + V  P N+GAILR A     DG+I         +  + +S+ G +  +P    + L + 
Sbjct: 122 EQVEKPGNVGAILRIADGVGADGVILCDPIVDLYNPNVIRSSLGTVFTLPI-WSATLDEV 180

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           LQ +    +Q    S  +      E  N  +AL+ G+E  GL     +   +   L M G
Sbjct: 181 LQTIAEEKWQVFATSPRASTMYFCENYNQPLALVFGSEKDGLTSHWLKGNFAKISLPMLG 240

Query: 259 IIKALNVSNAAAVALYITQNHF 280
            + +LN+S A +   Y      
Sbjct: 241 QVDSLNLSTAVSAVAYEVIRQR 262


>gi|238755588|ref|ZP_04616925.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
 gi|238706188|gb|EEP98568.1| tRNA guanosine-2'-O-methyltransferase [Yersinia ruckeri ATCC 29473]
          Length = 230

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ A++R+A A     I     +  +E   L  +A+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAVIRTADAVGIHQIHA--IWPTTEMYTLLSAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++ DA+Q   S G Q +    SD      +        +++G E  G+  +   
Sbjct: 72  QVKTHPDIGDAVQHFKSQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISKQALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|37912927|gb|AAR05259.1| predicted 23S rRNA methylase [uncultured marine gamma
           proteobacterium EB000-45B06]
 gi|40063153|gb|AAR37990.1| RNA methyltransferase, TrmH family, group 3 [uncultured marine
           bacterium 562]
          Length = 240

 Score =  169 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 10/242 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANL--PHPFPVKTVPP-- 98
           ++ EN    G H++ + L +   KI ++ L  K    R+         +  P +      
Sbjct: 2   NKKENDLRVGFHSIESILEHNPHKIKKITLPAKREDGRITKLIQKIEENKIPFEFSNKVK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           Q  +  +  +     L +    L          + L+++LD++ DP N+GA +RSA    
Sbjct: 62  QEPEAYISSD-----LEMNFKDLKLFLDSDEAQNPLILILDNIIDPRNLGACIRSAAVIG 116

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  K +    +++  K + G  E I    ++NL + L+ +        GLS  + K
Sbjct: 117 VDAMIINKHHCAPINSIAHKVSVGGAEVIKIFHVTNLVNCLKYLQGININIYGLSEHASK 176

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   +  A+I+GAE  G+R KT E      +L    + K+ NVS A  + L     
Sbjct: 177 SHTDYNFTEASAIIMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASR 236

Query: 279 HF 280
             
Sbjct: 237 QR 238


>gi|161870027|ref|YP_001599196.1| RNA methyltransferase [Neisseria meningitidis 053442]
 gi|161595580|gb|ABX73240.1| RNA methyltransferase [Neisseria meningitidis 053442]
          Length = 261

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  R +   +    A    +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGRPVGVYI--PEAKMPSEEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   V +V    + KI         LAL    +  P   A+      +VLD V 
Sbjct: 66  KLTAVLPEDGVFSVSDGILKKISSLTCADDVLAL----IDIPDAGALPAGGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  K  + + S  + ++  GA         ++L   L   
Sbjct: 122 DPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADLEIWLASY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|294789319|ref|ZP_06754557.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
           29453]
 gi|294482744|gb|EFG30433.1| RNA methyltransferase, TrmH family [Simonsiella muelleri ATCC
           29453]
          Length = 264

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 107/286 (37%), Gaps = 32/286 (11%)

Query: 1   MNLISKKKSEKIFSL-KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M +I+   +E++  + K    AK RR HR                      L GVH + A
Sbjct: 1   MKIITSVHNEQLKFISKLLQNAKSRREHRA-------------------TVLEGVHLLDA 41

Query: 60  ALNNPSRKIFQLLATKNALA--RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            L+       ++   +N LA   +    N      +  V    ++KI       Q    E
Sbjct: 42  YLDASHLP-KRVFVPQNRLANPEIQRIINRLPEHLITLVEHGKLNKIS------QLTEAE 94

Query: 118 --TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                +  P   ++  S   +VL+++ +  NIG ILRSA A     I+ +K  +   S  
Sbjct: 95  DIMTWVELPISGSLPISDDCVVLENIQNSGNIGTILRSAAAAGVAQIVLSKGCADVWSPK 154

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILG 234
           + ++A GA   +      +L D  +        T     ++    + Q      +A + G
Sbjct: 155 VLRAAMGAHFLLKIHERVDLLDWRESFSGDVLATALTEKNNFSLYDKQLDLTKPVAWVFG 214

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            EG G+       A +   + M G  ++LNV+ AA + L+      
Sbjct: 215 NEGSGVSADMLAQANATVKIPMIGATESLNVAMAATICLFEQMRQR 260


>gi|229820868|ref|YP_002882394.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566781|gb|ACQ80632.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 254

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 10/251 (3%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           + +   + + RH        + G   V  A+   + ++  L  T+ AL R     +    
Sbjct: 5   RALAGRSSRQRH----GRFLVEGPQAVREAVLFAASRLRDLYVTRAALERYPEIVDAARA 60

Query: 91  FP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147
               V  V  + + ++ G     QG+            D V R  +L+ V   + DP N 
Sbjct: 61  ADRFVHPVTDEVMARLSGDA---QGIIAVVDAAEHSLDDVVSRAPRLVAVCAQIRDPGNA 117

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++ T     + S  + +S++G+L H+P +    L +A+  + S   
Sbjct: 118 GTVIRAADAAGADAVVLTTGSVEATSPKVVRSSAGSLFHLPVVTGVTLQEAVAALRSAHL 177

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             +   +     +E        A + G E +GL       A ++  + + G  ++LNV+ 
Sbjct: 178 AVLAADASGTTDVETAPLAAPSAWVFGTEAQGLTADELALADAVVRVPLRGHAESLNVAM 237

Query: 268 AAAVALYITQN 278
           AA V LY +  
Sbjct: 238 AATVCLYASSR 248


>gi|221194652|ref|ZP_03567709.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
 gi|221185556|gb|EEE17946.1| RNA methyltransferase [Atopobium rimae ATCC 49626]
          Length = 292

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 12/221 (5%)

Query: 71  LLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           +L     L R  W       +  P+  +PPQ ++++VG +     L     P  +   + 
Sbjct: 67  ILQASEILERCGWHRCTQDQNVIPLLVMPPQELERLVGYKITRGLLTAMERPQGASITET 126

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  ++ + VL+++ D  N+GA+ R+A A   D ++     +   +    + + G +  +P
Sbjct: 127 LGKARTVAVLENLVDVSNVGAVFRNAAALDVDAVLLAPHCADHLARRAIRVSMGTVFQVP 186

Query: 189 YIRISN--LTDALQK-MHSWGFQTIGLSS-DSKKPLEQEIKN---DKIALILGAEGKGLR 241
           +  +      + L   +H  GF T  L+  D+  PL    +     K AL  G+EG GL 
Sbjct: 187 WAHVPEELWVEGLMHMLHEEGFITTALALTDTAVPLTDIKRTSSLGKHALFFGSEGYGLD 246

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +T E     A + M   + +LNV+ ++AVA +     FA+
Sbjct: 247 QRTIEACDQTAIIPMSHAVDSLNVAASSAVAFWEL---FAR 284


>gi|34112942|gb|AAQ62387.1| predicted rRNA methylase [uncultured marine gamma proteobacterium
           EBAC31A08]
          Length = 240

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 10/242 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANL--PHPFPVKTVPP-- 98
           ++ EN    G H++ + L +   KI ++ L  K    R+         +  P +      
Sbjct: 2   NKKENDLRVGFHSIESILEHSPHKIKKITLPAKREDGRITKLIQKIEENKIPFEFSNKVK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           Q  +  +  +     L +    L          + L+++LD++ DP N+GA +RSA    
Sbjct: 62  QEPEAYISSD-----LEMNFKDLKLFLDSDKAQNPLILILDNIIDPRNLGACIRSAAVIG 116

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  K +    +++  K + G  E I    ++NL + L+ +        GLS  + K
Sbjct: 117 VDAMIINKHHCAPINSIAHKVSVGGAEVIKIFHVTNLVNCLKYLQGININIYGLSEHASK 176

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                   +  A+I+GAE  G+R KT E      +L    + K+ NVS A  + L     
Sbjct: 177 SHTDYNFTEASAIIMGAEESGVREKTLERCDHKINLSSNKLFKSFNVSVATGIILSEASR 236

Query: 279 HF 280
             
Sbjct: 237 QR 238


>gi|324113107|gb|EGC07083.1| SpoU rRNA methylase [Escherichia fergusonii B253]
          Length = 345

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRLAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +    +K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPEKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|94986499|ref|YP_594432.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
 gi|94730748|emb|CAJ54110.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
          Length = 290

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 99/244 (40%), Gaps = 15/244 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVKTVPPQTIDKIVG 106
            L G+  V   +    +KI  +   K   ++      D              + +++   
Sbjct: 47  ILSGIKPVLDLIEKEPQKIDTIFLQKGLCSKEYQKVLDLCRQTNIRFIFTTSKVLNRFCL 106

Query: 107 KEAVHQGLALETAP----LLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+           L    D V ++ L  ++V D + DP N G I+R+  +    
Sbjct: 107 T--NHQGIVARLFESGFIELEDLFDKVPDAPLPLIVVFDQIQDPGNAGTIIRTLYSLGGA 164

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKP 219
           G+I  K           ++A G LE +P  +  NL+ A++  +  GF   G S     K 
Sbjct: 165 GVIIPKHNGVFLGQDARRAAVGCLERLPISKAINLSRAIETANEKGFHIYGTSIEKDSKN 224

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YIT- 276
           + +        LILG+E  G+R + ++   ++ H+ M   + +LNV+ A  + +  +   
Sbjct: 225 VFEAELKFPALLILGSEKSGIRLQLKKRCHTILHIPMVRDVNSLNVAQAGGIIISCFARC 284

Query: 277 QNHF 280
           QN+F
Sbjct: 285 QNNF 288


>gi|268316035|ref|YP_003289754.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262333569|gb|ACY47366.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 257

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 9/253 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
            R  K++   +++ +         + GV  ++AAL   +  + ++L T  A  R +  A 
Sbjct: 4   RRRLKELARLHRR-KDREALGQYLVEGVRLLAAALEAQAPLV-EVLVTATARRRPEVQAL 61

Query: 87  LPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           L     PV  V  Q + ++   E   QG+         P    +R  + ++ LD + DP 
Sbjct: 62  LARVAVPVAEVSEQEMARLSEVE-TSQGVLAVARMQWQPEAHLLR-CRRILALDGLQDPG 119

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G ILR+A  F  + ++         +  + ++A G+   +  +R   L D L ++ + 
Sbjct: 120 NAGTILRAAAWFGIEAVVAGAGTVDLYNPKVVRAAMGSHWDLALVRTGALPDLLAQLQAN 179

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKA 262
           GF   G   +   P  +    +   L+LG+E  GL+P  +E  T+   +         ++
Sbjct: 180 GFTCYGADLEG-TPASRWQPREPAVLVLGSEAHGLQPAVRERLTARVTVPGSPRRQATES 238

Query: 263 LNVSNAAAVALYI 275
           LNV+ AA V LY 
Sbjct: 239 LNVAMAATVLLYE 251


>gi|229106374|ref|NP_754987.2| putative methyltransferase [Escherichia coli CFT073]
 gi|300982304|ref|ZP_07176012.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 45-1]
 gi|300408791|gb|EFJ92329.1| RNA 2'-O ribose methyltransferase substrate binding [Escherichia
           coli MS 45-1]
 gi|315294515|gb|EFU53863.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 153-1]
          Length = 345

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKGALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|212723624|ref|NP_001132172.1| hypothetical protein LOC100193597 [Zea mays]
 gi|194693648|gb|ACF80908.1| unknown [Zea mays]
          Length = 365

 Score =  169 bits (429), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/274 (20%), Positives = 107/274 (39%), Gaps = 28/274 (10%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K        + +      L L G+  +    +     I  LL      A    +A 
Sbjct: 86  NPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCSFELEAIDYLLLLDGVEAP---EAL 142

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTL------DAVRN----SQL 134
                 +  V    + K+ G ++V   + +A+   P     L      DA+       + 
Sbjct: 143 REFSGDILYVSAAVMKKVSGMQSVDSTEAVAVMHMPNHFRDLGSHQDGDALDGLFSYPKR 202

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P +  + 
Sbjct: 203 ILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGT- 261

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGLRPK 243
             D    +  +  + +    +S              L   + N+ + L+LG+EG GL  +
Sbjct: 262 WHDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEGNGLSAE 321

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 322 TLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 354


>gi|302335827|ref|YP_003801034.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
 gi|301319667|gb|ADK68154.1| tRNA/rRNA methyltransferase (SpoU) [Olsenella uli DSM 7084]
          Length = 277

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 99/254 (38%), Gaps = 8/254 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NL 87
           Y ++     +S        + L  ++ ++ A+     ++  +   +  L RL  +     
Sbjct: 20  YVRLTDRQLRSVLDPNSALVILESLNVITLAVR-EGVELVSVFVERRHLERLLAELPSLS 78

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                V       + ++VG   V   LA    P      + +  +  + VL+ + D  N+
Sbjct: 79  ERDIEVFVASRAVMSEVVGFNVVRGYLAAARRPHPREAQEVLEGASRVAVLEGLTDVSNV 138

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT--DALQKMHSW 205
           GA+ RSA A   D ++     +   +    +++ G +  +P+              + + 
Sbjct: 139 GALFRSAAALGVDALLLAPTCADPFNRRAIRTSMGTVFQLPWAPAPRPWPQATFDALRAD 198

Query: 206 GFQTIGLSSDS-KKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF ++ L+ D     L+      + ++AL  G+EG GL           A + M   + +
Sbjct: 199 GFTSVALALDECAVRLDDPALADSGRVALFFGSEGTGLSDDVLSAVDRSAIIPMSRGVDS 258

Query: 263 LNVSNAAAVALYIT 276
           LNV+ ++AVA +  
Sbjct: 259 LNVAASSAVAFWEL 272


>gi|256824064|ref|YP_003148024.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256687457|gb|ACV05259.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 271

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 8/241 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN-----ALARLDWDANLPHPFPVKTVPPQT 100
             +  + G   +  AL    R   +L   +      A  +   +        + T+    
Sbjct: 31  TGSTLVEGYEELQIALAGGVRP-RELYLCEELMADPAAQQDVVELASQRGAGIVTLSRAV 89

Query: 101 IDKIVGKEAVHQGLALETAP-LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +K   +E     LA+   P +    L       L +V +H+  P N+GAILR+A A   
Sbjct: 90  FEKAAYREGPDGFLAVVPTPGVALADLPQPDGPGLYVVAEHLEKPGNLGAILRTADAAGV 149

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D +I     +   +  + + + G +  +P        + L  +   G   +  +  ++  
Sbjct: 150 DAVIAADPVTDWGNPNVVRGSKGTVFSVPVATAP-TPEVLDFLAGRGMTLVATTPHTEVL 208

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             Q      +A+ +GAE  GL     E AT    + M G   +LNV+ +AA+ +Y     
Sbjct: 209 HTQVDLTGPVAIAVGAEKTGLTASALEGATHRVRIPMVGRANSLNVATSAAIVVYEAVRQ 268

Query: 280 F 280
            
Sbjct: 269 R 269


>gi|311105998|ref|YP_003978851.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8]
 gi|310760687|gb|ADP16136.1| SpoU rRNA methylase family protein 1 [Achromobacter xylosoxidans
           A8]
          Length = 262

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 99/259 (38%), Gaps = 12/259 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLD 82
            R++   K +      +     P  + L GVH   A L +       +    + +   + 
Sbjct: 6   SRDNPAVKALAKLAVTAGKRGAP--VLLEGVHLCQAWLQHHGAPDQAIFDVERLSQPDIA 63

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             A          +  + +  +   E+  QG+A +  P +    DAV  +   ++ D + 
Sbjct: 64  ALAAAVPDRDCLALDARLMQSLAAVESG-QGVAFQVTPPVLDLPDAVDEN--CVLFDRIQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A     +      + + S  + +S  GA   +      +L   L ++
Sbjct: 121 DPGNVGTLLRTCAAAGVKRVFLATGTAAAWSPKVLRSGQGAHFALAIHEHVDLAALLPRL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGII 260
                  +  + D  + L + +   + A + G EG+G+  +    A     +   M   +
Sbjct: 181 Q---IPLVATALDGARDLYEGVLPQRCAWVFGHEGQGVAAELLAAARLKVRIPHDMA-AV 236

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV  AAA+ L+  +  
Sbjct: 237 ESLNVGAAAAICLFEQRRQ 255


>gi|144897679|emb|CAM74543.1| tRNA/rRNA methyltransferase (SpoU) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 248

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 108/245 (44%), Gaps = 13/245 (5%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTI 101
           +QP+   + G+  V+A       ++ +L       A              P + VP + +
Sbjct: 2   AQPKLHRIGGLPAVAALFQRDPGRVERLFFNDRMKAEAQPLCQQMAAARKPFRHVPTEEL 61

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAV 155
            K+ G   +H G+     P      +AV++       + L++LD + +PHN+GAI R+  
Sbjct: 62  TKVAGT-PLHGGIVAVCQPKGLTPFEAVKSFNWAKAKEPLVILDGIGNPHNLGAIARTMA 120

Query: 156 AFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            F    +I +        S    + A G LE +   +++NL  AL ++    +Q IG + 
Sbjct: 121 FFGLGRLIVSDHPEQALPSDAAFRIAEGGLEWVDVYQVANLGKALPRLK-PHYQVIGTAL 179

Query: 215 DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            + + ++      +  +AL+LG E +GL   T      +  +   G +++LNVS  AA+ 
Sbjct: 180 GAHRSMKDTFSSNDKPLALVLGNEEEGLPATTLAACDDIVTIPGSGRVQSLNVSATAAIL 239

Query: 273 LYITQ 277
           +++  
Sbjct: 240 IHLLA 244


>gi|284009258|emb|CBA76372.1| tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
          Length = 331

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 60/248 (24%), Positives = 97/248 (39%), Gaps = 15/248 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLDWDANLPHPFPVKTVP 97
              + E   +YG H   A   +    I +       T +    L W A     + V  V 
Sbjct: 86  RRQRLEETRIYGEHACQAMFKHRPEAIVRAWFVQSITPHFRDALKWMAANRKAYHV--VN 143

Query: 98  PQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            + + K  G E  H G+               L        ++ ++ + +PHN+GAI+RS
Sbjct: 144 EEELIKASGTE-HHGGVCFLIKKRTGLDAEAYLAQSNKIDCVLAVEDIGNPHNLGAIMRS 202

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
              F   GII     +  ES    ++A+G  E+I  I+  N    L K    G+  +  S
Sbjct: 203 CAHFGVQGIIL-HDTAAMESGSAVRTAAGGAEYIKGIQSDNFATTLNKFRHAGYIIVTTS 261

Query: 214 SDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +      + + +  +KI L+L  E  GL     +       +   G +K+LNVS AA + 
Sbjct: 262 NHKDNIDIAKAVLPEKIVLLLEQESDGLTASLCQKGDMSLSIGGTGQVKSLNVSVAAGII 321

Query: 273 L--YITQN 278
           L  +  QN
Sbjct: 322 LAKWWQQN 329


>gi|320093952|ref|ZP_08025781.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979110|gb|EFW10624.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 287

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 12/255 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           +++   + +S   S+   + + G   V   L +    +  +  +  A       A     
Sbjct: 11  RRVAGLSGRS-ARSRASAVLVEGPQAVRELLVHRPASVRDVYISAAARLAHPGIAGAARS 69

Query: 91  FP--VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V TV  +    +       QG+    A   +   +   +    +++    DP N+G
Sbjct: 70  ATRWVHTVTDEVAAALSAD---CQGVCA-VASADAIVREWPADGGFYVIIAQGRDPGNVG 125

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R+A A     ++T    +   S  + ++++G++ H+P I       A+  +H+ G +
Sbjct: 126 TIIRTADAMGARAVLTVAGTADVTSPKVVRASAGSVFHLPVIPHPAFGAAVDALHARGAR 185

Query: 209 TIGLSSDS-KKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            +G S      PL    E+       A  LG E +GL          +  + M G+ ++L
Sbjct: 186 VLGTSGGPRAVPLPAVEEEGALAGPHAWALGNEARGLDADEVAACDLLVAIPMTGLAESL 245

Query: 264 NVSNAAAVALYITQN 278
           NV++AAAV LY +Q 
Sbjct: 246 NVASAAAVCLYASQR 260


>gi|328949678|ref|YP_004367013.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450002|gb|AEB10903.1| tRNA guanosine-2'-O-methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 223

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--- 173
           E    L   LD  R   L +++++V+ PHN+ AILR+A A         + ++ + +   
Sbjct: 4   ERYRKLRAVLDK-RQPDLTVLMENVHKPHNLSAILRTADAVGV-----YEAHAVNPTGGV 57

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
               +++ G+ + +      ++  A+Q +   GF       SD             +A++
Sbjct: 58  PTYNETSGGSEKWVYLRVHPDIATAVQHLKERGFLVYAAHLSDEAVDYRAVDYTRPVAVL 117

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAE  G+ P+    A     + M G++++LNVS AAAV L+  Q   
Sbjct: 118 LGAEKWGVSPEAAALADRHIVIPMMGMVQSLNVSVAAAVILFEAQRQR 165


>gi|34540534|ref|NP_905013.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|34396847|gb|AAQ65912.1| RNA methyltransferase, TrmH family [Porphyromonas gingivalis W83]
          Length = 254

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 98/258 (37%), Gaps = 17/258 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S  ++ ++  + +   + G   V   L  P  +   L+ T    A +    + P
Sbjct: 6   QIKFLRSLRER-KYRLREQAFAVEGPKLVGEML--PFYRCRMLVGT----AAMLRAVSTP 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H   V  +P     K +  +   Q L         P         L ++LD V DP N+G
Sbjct: 59  HDAEVVELPESFDFKRISTQTTPQPLMAV---FDLPAEPEPVVEGLTLLLDGVQDPGNVG 115

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILR+A  F    +      +   S  + +++ GAL  +    + N  D L      G  
Sbjct: 116 TILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIP 175

Query: 209 TIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIK 261
             G   D +   E  +    +   L+LG+EG+G+ P+     T    +      + G  +
Sbjct: 176 VYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTE 235

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A A+     +  
Sbjct: 236 SLNVAIATAILCSEWRRR 253


>gi|91218034|ref|ZP_01254985.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
 gi|91183781|gb|EAS70173.1| putative rRNA methylase [Psychroflexus torquis ATCC 700755]
          Length = 263

 Score =  169 bits (428), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 91/237 (38%), Gaps = 7/237 (2%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            E   + G+  +S A          L+        LD +        +  +     +K+ 
Sbjct: 29  QEEFVIEGLQEISYAQKATYEFSQVLVCLDLFDNALDLE---KFDCEITEISLDVFEKLA 85

Query: 106 GKEAVHQGLALETAP--LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            + +   GL     P  L    L     + L+M+ +    P NIGA+LR+A A   D +I
Sbjct: 86  YRSST-GGLIAIAKPKDLRIENLRLSSKTPLIMIAEAPEKPGNIGALLRTADAAKLDAVI 144

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                +   +  + +S+ G +     I     ++ +  + +   +    +         E
Sbjct: 145 IANPKTDLYNPNIIRSSVGTVFT-NSIGTGTTSEIIDFLKNNNIKIYAAALQDSSSYLAE 203

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  A+++G E +GL  + +  A  +  + M G + +LNVS +AA+ ++  +   
Sbjct: 204 GFKEATAIVVGTEHQGLSEEWRINADKIIKIPMEGQVDSLNVSVSAAILIFEAKRQR 260


>gi|323182442|gb|EFZ67846.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1357]
          Length = 229

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|294777466|ref|ZP_06742917.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294448534|gb|EFG17083.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 178

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   T+D  + +    L +VLD V   HNIG++ R++ AF  D I      +   
Sbjct: 4   LKITELNRLTVDEFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKI 229
              + K+A GA   + +    N  DA+Q++H  GF  + +   +    L+  +   + K 
Sbjct: 64  HPEMHKTALGAENSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A+++G E KG++ +          +   G   +LNVS    + L+   N   K
Sbjct: 124 AIVMGNEVKGVQQEVVNACDGCVEIPQYGTKHSLNVSVTTGIILWEFANKLMK 176


>gi|238759850|ref|ZP_04621006.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
 gi|238701911|gb|EEP94472.1| tRNA guanosine-2'-O-methyltransferase [Yersinia aldovae ATCC 35236]
          Length = 230

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + L+ V+ PHN+ AI+R+A A     +      +   + +   SA+G+   +  
Sbjct: 16  RQPDLTVCLEEVHKPHNVSAIIRTADAVGIHQVHAIWPTTQMYTRL--SSAAGSNSWVQV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +++  A+  + S   Q +    SD      +        +++G E  G+  +    A
Sbjct: 74  KTHTHIAGAIAHLKSQDMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGISEEALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|313625381|gb|EFR95171.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           J1-023]
          Length = 201

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 13/203 (6%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD +             ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGA 235
            +           +  +A+++G+
Sbjct: 179 DAKGSSDYRTMDVDMPLAIVIGS 201


>gi|219128759|ref|XP_002184573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404023|gb|EEC43972.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 343

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 99/275 (36%), Gaps = 33/275 (12%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARL------- 81
           KK+Q+   K +   +     + G   V   L  P     +  +    +   +        
Sbjct: 68  KKIQALLNKRKKRLEQRETVVEGPRMVVDLLKQPQTHHLVRSIFIASDKWEQYYPEILRA 127

Query: 82  --DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVL 138
             + ++ LP   P   V P             QG+   T  P+ S        + L +VL
Sbjct: 128 VGEDESRLPLTLP---VTPPVFAA-CSDTITPQGILAITEIPIFSLERRDAPQNPLYLVL 183

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D V+DP N+G +LRS+VA    G++         +    +SA G    IP     N  + 
Sbjct: 184 DGVSDPGNLGTLLRSSVATGVAGVLLLPGSCDPWAPKAIRSAMGTTFQIPVETFENWDEC 243

Query: 199 LQKMHSWG---FQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-- 251
            +K+   G   F    +  D   +   E    +   ALI+G+EG GL    +     +  
Sbjct: 244 REKLVHLGCNNFWAATMLEDGVGRSHYEVNWLSGPNALIIGSEGNGLTKPIR---DDLAV 300

Query: 252 -------AHLHMPGIIKALNVSNAAAVALYITQNH 279
                   ++ M   I++LN +   +V L+     
Sbjct: 301 TSPRLKSVYVPMKAGIESLNAAVCGSVILFEYMRQ 335


>gi|212704886|ref|ZP_03313014.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
 gi|212671728|gb|EEB32211.1| hypothetical protein DESPIG_02953 [Desulfovibrio piger ATCC 29098]
          Length = 261

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 97/248 (39%), Gaps = 22/248 (8%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKTVPPQTIDK 103
           E   L G+  V   L    ++I  +   K    R   D              V    +D+
Sbjct: 6   ETPLLPGMKPVLELLRTDPQRIDLVFCKKGLRTRDAQDVQQLCRQSGVRFSLVDQAALDR 65

Query: 104 IV-------GKEA---VHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNI 147
           +        G EA    HQG+           L  V  +       L++ LD V DP N+
Sbjct: 66  LCREAAQQNGNEAAPLNHQGVVARLTATDFRDLADVLQAAAEAPLPLVVALDQVQDPGNV 125

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G + R+  A    G+I  +  S        ++A+GALE +P  R++NL  AL +    GF
Sbjct: 126 GTLCRTLYALGGAGVILPRHNSAYLGPAAHRAAAGALERLPVARVTNLAHALDEAEEAGF 185

Query: 208 QTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              G     D+    E  ++     L+LG E KGLRP   +    M  + +     +LNV
Sbjct: 186 SIYGAGCGPDAADAFEHAMQL-PAVLVLGNEDKGLRPGVAKRCGRMLRIPLARKFDSLNV 244

Query: 266 SNAAAVAL 273
           + A A+ L
Sbjct: 245 AQAGAILL 252


>gi|15803108|ref|NP_289139.1| putative methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|25325044|pir||E85904 hypothetical protein yfiF [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517002|gb|AAG57697.1|AE005488_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 345

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 93/245 (37%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAXHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++  +PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENEXNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|323156241|gb|EFZ42400.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Escherichia coli EPECa14]
          Length = 247

 Score =  168 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 3   RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 62

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 63  ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 121

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 122 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 180

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 181 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 240

Query: 274 YITQN 278
           +  QN
Sbjct: 241 WWRQN 245


>gi|296112629|ref|YP_003626567.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
 gi|295920323|gb|ADG60674.1| tRNA/rRNA methyltransferase SpoU [Moraxella catarrhalis RH4]
          Length = 258

 Score =  168 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 15/262 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +L+ +++A    + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQMP-AVHRLIVSESATVHDEV 63

Query: 84  DANLPHPFP--VKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              L    P  +  +      +I    ++V     +    +   +L  + +    ++LD 
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVS---VMAVIDIPHRSLPTISSD--CLILDG 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  NIG +LR+A A     +IT+   +   S    ++  GA   +       + + LQ
Sbjct: 119 LQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSMSIYEHIAVNEILQ 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K+ +        SS + K +        IA +LG EG+G+R +    A     L  PG  
Sbjct: 179 KLKT---PLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQ 234

Query: 261 KALNVSNAAAVALYI--TQNHF 280
           ++LNV  A +V  Y    Q H+
Sbjct: 235 ESLNVGIAGSVCFYEMLRQRHY 256


>gi|73541555|ref|YP_296075.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
 gi|72118968|gb|AAZ61231.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
          Length = 261

 Score =  168 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 91/258 (35%), Gaps = 7/258 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K +++    +    +     L GVH   A +    + +  +++ ++       
Sbjct: 6   SRDNALFKHLKALATSTHQRRKAGQSLLDGVHLAQAYVAALGQPVSCVVSERHYDHAEVA 65

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                       V    +   V    V  G+  +      S  L A      + +LD + 
Sbjct: 66  PLLAAVDSQRVVVLADVLFTQVS--GVVNGIDLMLVIETPSGHLPARIEEDCI-ILDGLQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A            + + S    ++  GA  H+  +    +     ++
Sbjct: 123 DAGNVGSILRSAAAAGIRHAFLGTGCAFAWSVKTLRAGMGANFHLNIVEHCTIDMLAPRL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  SS +   +        +A I+G EG G+     E       +  PG +++
Sbjct: 183 A---VPLLATSSHADAAVFDTDLRGPVAWIVGNEGAGVSDAWMEHVARTVGIPQPGGLES 239

Query: 263 LNVSNAAAVALYITQNHF 280
           LNV  A A+ L+      
Sbjct: 240 LNVGAATAICLFEAVRQR 257


>gi|269837199|ref|YP_003319427.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
           20745]
 gi|269786462|gb|ACZ38605.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
           20745]
          Length = 293

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 10/257 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           + K+    Q+ +         + GV  ++ AL+  +      +  +   + L   A   H
Sbjct: 21  WVKLARSLQRRKARYTERAFLVEGVRLLTDALDAGAVPSVLFIDAEKEHSALTELATAAH 80

Query: 90  PFPVKTVPP-QTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRNSQLLMVLDHVNDP 144
               + +P    + + +      QG+     P         + A   + L ++ D + DP
Sbjct: 81  ARGARVIPVTSALLRSIADTETPQGVV-GIVPFPELGERGDIGAGATAPLFLIADGIRDP 139

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G +LR+A+     G+  T   +   +  + ++  GA   +P   +     A    H 
Sbjct: 140 GNLGTLLRAALGAGAHGVYVTAGTTDPFAPKVVRAGMGAHFRLPIAYLDWRAPA---PHI 196

Query: 205 WGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G  T I  + D++   +         +I+G+E +GL P  +E AT  A + + G +++L
Sbjct: 197 AGIATRIAATGDAETVYDAIDWTAPACVIIGSEAEGLSPAAREFATGTARIPLAGGLESL 256

Query: 264 NVSNAAAVALYITQNHF 280
           N + A  V L+      
Sbjct: 257 NAAMAGTVILFEAARQR 273


>gi|197104628|ref|YP_002130005.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196478048|gb|ACG77576.1| spoU rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 235

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 6/227 (2%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIVGKEAV 110
            G   +  A      +I  +L  +N LA L    A+LP   PV       +D IVG   +
Sbjct: 3   EGRVVLEKAARAMPERIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGF-PI 61

Query: 111 HQGL-ALETAPLLSPT--LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           H+G+ AL   P  S    L  + +  L++ L  + +  NIG I R+A AF    +I    
Sbjct: 62  HRGILALGRRPERSAAGLLAGLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDAA 121

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
                     + + GA   +P+ R+    D +  +   G + + LS   +  L       
Sbjct: 122 CCDPLYRKAIRVSVGAALTMPFARLEAGEDLVGALAGAGLEVLALSPAGETDLADLAPPA 181

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++A + GAEG GL        T    + M G   +LNV+  + + L+
Sbjct: 182 RVAALFGAEGPGLPDDVLAR-TRTVRIPMAGGFDSLNVATTSGIVLH 227


>gi|225012730|ref|ZP_03703165.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225003263|gb|EEG41238.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 264

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 99/255 (38%), Gaps = 5/255 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            + + KK++   QK+R   +     + G   +  A+         +   + A+   +   
Sbjct: 8   QNPELKKLRLLFQKARERKKLALFVIEGKREIQKAIR-GGYSFESVFIHEEAIGDFESLL 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           N        ++     +K+  +    + +A  +  P     L  +  + +++V++    P
Sbjct: 67  NSVDHVTKYSLEASLFEKLSIRSGSEKIIAIAQNKPHDLSQL-KLNKNSIVLVIEAPEKP 125

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+ R+A A   D +I     +   +    +S+ G +  +P    S++ + +  +  
Sbjct: 126 GNIGALYRTAAAAKIDAVIIANPKTDFYNPNSIRSSLGGIFILPTAIASSI-EVIAYLKE 184

Query: 205 WGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                   + +SK  P +Q       AL++G E  GL             + M   + +L
Sbjct: 185 NKITIATAAINSKAVPYDQFEYTPPCALVMGTESTGLDQLWLNETNQNLMIPMADEVDSL 244

Query: 264 NVSNAAAVALYITQN 278
           N+S +A + +Y  Q 
Sbjct: 245 NLSVSAGILMYECQR 259


>gi|23308848|ref|NP_600607.2| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|21324156|dbj|BAB98781.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
          Length = 198

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 3/181 (1%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               K +       G+      +L     A+    +L+ V     +P N G ++R + A 
Sbjct: 10  DKAAKHLSDTVTTTGIFALCDDVLWSVGKAITGQPRLVSVPVETREPGNAGTLIRVSDAV 69

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++          A   +S++G+L HIP  R +N+ D L ++ S G Q +  S+D +
Sbjct: 70  GADAVVFAGESVDPLGAKAVRSSAGSLFHIPVARNNNIADVLGQLRSKGLQILATSADGE 129

Query: 218 KPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             L+          A + G E  GL       A     + + G  ++LN++ AA++ LY 
Sbjct: 130 VDLDDADELLAKPTAWLFGNEAHGLDESLLAQADHRVRIPIRGRAESLNLATAASICLYE 189

Query: 276 T 276
           +
Sbjct: 190 S 190


>gi|323189442|gb|EFZ74723.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli RN587/1]
          Length = 229

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|331649465|ref|ZP_08350551.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
 gi|330909712|gb|EGH38226.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Escherichia coli AA86]
 gi|331041963|gb|EGI14107.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M605]
          Length = 229

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|197334204|ref|YP_002154872.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
 gi|197315694|gb|ACH65141.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri MJ11]
          Length = 229

 Score =  168 bits (427), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SA 174
           LE    ++  L A R + L + L+ V+  +N+ AI+R+A A     I       P+E   
Sbjct: 3   LERYKRITSVLKA-RQTDLTLCLEEVHKANNVSAIVRTADATGIHKI---HAVWPTEQMQ 58

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
           +L  +++GA   +      N+ DA   +   G Q +  + SD+     +       A+IL
Sbjct: 59  MLGHTSAGARNWVDVETHKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIIL 118

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+E  G+  K    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 119 GSEKTGISKKALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|154315816|ref|XP_001557230.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10]
 gi|150846876|gb|EDN22069.1| hypothetical protein BC1G_04480 [Botryotinia fuckeliana B05.10]
          Length = 586

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 79/310 (25%)

Query: 46  PENLFLYGVHTVSAALNNPS---RKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPP 98
           P + FLYG   V AALN      RK+++L   K        R    A L     V+    
Sbjct: 252 PASEFLYGTSVVEAALNARRKRSRKLYKLYILKGEDRQNGERDGAIAKLAQKKGVEVAIV 311

Query: 99  Q------TIDKIVGKEAVHQGLALETAPLLSPTL-------------------------- 126
           +      T+DK+  +   H G  LE +PL    L                          
Sbjct: 312 RGHDWLRTLDKM-SQGRPHNGYILEVSPLPRLPLMSLGSIIDQDDSFAIKLTPDHQSREE 370

Query: 127 --------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                         D+     L+++LD + DP N+GAILR+A+      +  + R S S 
Sbjct: 371 IEVNGNDTIIKVAKDSTGRKPLILLLDSIEDPQNLGAILRTALFMGVTAVAISTRNSASF 430

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-------SDSK-------- 217
           + V+ K+++GA E+I    ++     +    + G++            +DS+        
Sbjct: 431 TPVVFKASAGAAENIEIFSVNKPGGFVTGSQAAGWKIYAAVAPPAPRKADSRHMWPPTSQ 490

Query: 218 -----KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---GIIKALNVSNAA 269
                  L+  +++D   L++G EG+GLR   ++ A     +      G + +LNVS A 
Sbjct: 491 EFVWTHDLQDPLRDDPCILMVGGEGEGLRKALRDHADVHLSIKGAGNRGRLDSLNVSVAT 550

Query: 270 AVAL--YITQ 277
            +    ++ Q
Sbjct: 551 GMLCDAFMRQ 560


>gi|212711590|ref|ZP_03319718.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
           30120]
 gi|212685692|gb|EEB45220.1| hypothetical protein PROVALCAL_02665 [Providencia alcalifaciens DSM
           30120]
          Length = 226

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-AKSASGALEH 186
           A+R   L + L+ ++ PHN+ AI+RSA A     I       P +   L   SA+G+   
Sbjct: 3   AMRQPDLTLCLEEIHKPHNVSAIVRSADAVGIHNI---HAVWPDQHVKLSVSSAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  I   +  +A+ ++ S G Q +  + SDS     +        +++G E  G+  K  
Sbjct: 60  VKVIPHQSTENAISQIKSQGMQILVTNLSDSAVDFREIDYTQPTCIMVGQEKTGISDKAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 ALADQHIIIPMVGMVQSLNVSVASALILYEAQRQR 154


>gi|26109353|gb|AAN81555.1|AE016764_237 Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           CFT073]
          Length = 370

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 126 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKGALRWMAANRKAYHVVDEA 185

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 186 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 244

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 245 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 303

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 304 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 363

Query: 274 YITQN 278
           +  QN
Sbjct: 364 WWRQN 368


>gi|283853731|ref|ZP_06370959.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           FW1012B]
 gi|283570881|gb|EFC18913.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           FW1012B]
          Length = 274

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 14/232 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKE 108
           G   V   L    + +  +L  +  L   D DA +          + VP   +D++    
Sbjct: 34  GRKPVRELLAERPKSVDDVLLRQG-LRGPDIDAIVASCREAGVRFRFVPTGDLDRL--YP 90

Query: 109 AVHQGLALETAP----LLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+           L   L+A RN+ L   + LD V DP N+GA+ R+  A    GI
Sbjct: 91  GNHQGVLARLIAGELASLDDVLEATRNAPLPVALALDRVQDPGNVGALARTLYALGGGGI 150

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE 221
           I  +          AK+++G L  +P  +++NL+ AL++    GF  +G +  D  +   
Sbjct: 151 ILPRHEGARLGPGAAKASAGTLSRLPVAKVANLSRALEEAAEAGFAVVGAAGEDGAENAL 210

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  + L+LG E +G+R   ++   ++  +     + +LNV+ A A+ L
Sbjct: 211 AARPEFPLVLVLGNEDEGIRLGVRKRCQTLYRIPQARPLDSLNVAQAGAILL 262


>gi|325282012|ref|YP_004254554.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324313821|gb|ADY34374.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 253

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 99/257 (38%), Gaps = 11/257 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +   K+    +K +   +     + G   V   L++P  KI  L+A     + L+ +   
Sbjct: 4   KQVTKIVQNLEKKKFREKYNLFKIEGEKLVGELLHSP-LKIHSLIA---FPSWLEQNKKA 59

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                +     + +  I   +++ + +AL   P+     + V +S L +VL+ + DP N+
Sbjct: 60  LSNVNIIEADEREMHGISNFQSLPEVIALAEIPVHIYRKEEVLDS-LSLVLNGIQDPGNL 118

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR A  F    I      +   +    +++ GA+  +     ++L   L ++   G 
Sbjct: 119 GTILRVADWFGIGNIFCDADCAGVYNPKCVQASMGAIFRVKTFY-TDLPVLLSELKQEGL 177

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKAL 263
              G   D K      +    + +++G EGKG+  + +        +          ++L
Sbjct: 178 PVFGTFLDGKNIYTTALSTRGL-IVMGNEGKGISAEIEALTGQKLTIPSFARNSESTESL 236

Query: 264 NVSNAAAVALYITQNHF 280
           NV  A  + L   +   
Sbjct: 237 NVGVATGIILSEFKRRM 253


>gi|326577747|gb|EGE27623.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
          Length = 258

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 103/262 (39%), Gaps = 15/262 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +++ +++A A  + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRIIVSESATAHDEV 63

Query: 84  DANLPHPFP--VKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              L    P  +  +      +I    ++V     +    +   +L  +      ++LD 
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGDSVS---VMAVIDIPHRSLPTISGD--CLILDG 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  NIG +LR+  A     +IT+   +   S    ++  GA   I       + + LQ
Sbjct: 119 LQDLGNIGTLLRTTSAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSISIYEHIAVDEILQ 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K+ +        SS + K +        IA +LG EG+G+R +    A     L  PG  
Sbjct: 179 KLKT---PLYATSSHTNKVIYDHDLTGPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQ 234

Query: 261 KALNVSNAAAVALYI--TQNHF 280
           ++LNV  A +V  Y    Q H+
Sbjct: 235 ESLNVGIAGSVCFYEMLRQRHY 256


>gi|156843950|ref|XP_001645040.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115695|gb|EDO17182.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 398

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 132/347 (38%), Gaps = 82/347 (23%)

Query: 7   KKSEKIFSLKDSH-YAKLRRNHRDYKK----------MQSFNQKSRHTSQPENL------ 49
           +  +  F  K +H +A+ +   R Y+K           QSF  + R  + P         
Sbjct: 49  EDKDDFFRRKYAHVHARQKEGRRSYEKHSAKEETQPPRQSFFDRPRRNANPSRYLQANPL 108

Query: 50  --FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
             ++YG ++V AAL +  R+ F  L    +L     + +      +       ++ ++ K
Sbjct: 109 LEYVYGTNSVLAALQSNKREYFTKLYYHGSLQPDIENLSKSRSVELVKTDKHNLN-LLTK 167

Query: 108 EAVHQGLALETAPLLSPTLDAV-------------------------------RNSQLLM 136
           +AVH  + LET PL    ++ +                               +   L +
Sbjct: 168 DAVHNNVVLETKPLKPIEINNLETVNTEDCTFQITEQSLIKKTKSIGYISNENKKFPLGV 227

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            LD V DPHN+GAI+RSA     D ++ +++     S  + K++SG++E +P   +    
Sbjct: 228 YLDEVMDPHNVGAIIRSAYFLGADFVVMSRKNCAPLSGTVNKTSSGSMELLPIYYVDKPL 287

Query: 197 DALQKMHSWGFQTI--------GLSSDSK----KPLEQEIKND-----KIALILGAEGKG 239
              QK    G  +          +S D+K    K L  E  +       + L++G E  G
Sbjct: 288 TFFQKSSEEGGWSFISSCITDDIISKDNKFIKNKMLSLEDLSGLCKEFPVVLVVGNENTG 347

Query: 240 LRPKTQETATSMAHLHMPGI-------------IKALNVSNAAAVAL 273
           +R   +  +     +   G              + +LNVS A A+ L
Sbjct: 348 IRTNLRMRSDFYVEIP-FGRDSESDSNRQAISTVDSLNVSVATALLL 393


>gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana]
 gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana]
 gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 352

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 36/292 (12%)

Query: 18  SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA--LNNPSR----KIFQ 70
           SH   +    +   K      Q S +     ++ + G   +          +    +I  
Sbjct: 64  SHVNSITSTTNPFVKHCLKLRQSSSYRHAHGSVLVVGTIPIREVCMFQTNKQGMTTEIEC 123

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LL  + A      ++       V ++  + +  +   E+V + +AL   P     L   +
Sbjct: 124 LLLHEEAKIPQGLESLSIRIVRVSSLVMKKLSGVQSTESV-EAIALMRIPSSFTDLKDDK 182

Query: 131 N-----------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           +           +  ++VLD + DP N+G ++RSA+AF+ DG           +    ++
Sbjct: 183 DIITDCNKWFPSAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRA 242

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKN 226
           + GA   +P +   N      K+    FQ   L+                     Q +  
Sbjct: 243 SRGASFQLPIVS-GNWNHL--KLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAE 299

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + LILG+EG GL  + ++    +  + M G  ++LNVS A  + LY+ QN
Sbjct: 300 KPLCLILGSEGNGLSEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYMLQN 350


>gi|218559502|ref|YP_002392415.1| methyltransferase [Escherichia coli S88]
 gi|218366271|emb|CAR04018.1| putative methyltransferase [Escherichia coli S88]
 gi|294490617|gb|ADE89373.1| RNA methyltransferase, TrmH family [Escherichia coli IHE3034]
 gi|307625870|gb|ADN70174.1| putative methyltransferase [Escherichia coli UM146]
 gi|315287997|gb|EFU47399.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 110-3]
 gi|323949235|gb|EGB45126.1| SpoU rRNA methylase [Escherichia coli H252]
 gi|323955817|gb|EGB51575.1| SpoU rRNA methylase [Escherichia coli H263]
          Length = 345

 Score =  168 bits (426), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  E++  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|325293791|ref|YP_004279655.1| RNA methylase [Agrobacterium sp. H13-3]
 gi|325061644|gb|ADY65335.1| RNA methylase [Agrobacterium sp. H13-3]
          Length = 290

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 107/254 (42%), Gaps = 12/254 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRK-----IFQLLATKNALARL-DWDANLPHPFP 92
           + R  +  +  F+     V   L    +         +L  KN L+ + D  A+ P   P
Sbjct: 38  RERDLTGRQGRFIAEGTVVLRMLAAAHKAGGAFAAESILILKNRLSGVADILADFPPDVP 97

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD----AVRNSQLLMVLDHVNDPHNIG 148
           V       +D IVG   +H+G+      +   TLD    A+  S L++V   +++  N+G
Sbjct: 98  VYVAEAPVLDGIVGFH-LHRGILALGRRVRDITLDGLTDALPASSLVLVGCGISNHDNLG 156

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ R+A AF  D +   +           + + G++  +PY R       L+++   GF 
Sbjct: 157 AMFRNAAAFYADAVFLDETSCDPLYRKALRVSVGSVLSVPYHRGGGAVQMLERLSQAGFA 216

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
              LS + +  +    ++D++AL++G EG+GL           A +     + +LN   A
Sbjct: 217 IWSLSPNGETEIRDIPRSDRMALVIGTEGEGLPQSVLSRF-HTARIAQSPQLDSLNAGTA 275

Query: 269 AAVALYITQNHFAK 282
           + +ALY       +
Sbjct: 276 SGLALYQMAGAIGR 289


>gi|260892439|ref|YP_003238536.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
 gi|260864580|gb|ACX51686.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
          Length = 266

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 103/246 (41%), Gaps = 12/246 (4%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L +++   K +    QK +   +     + G H V+ AL +   K+  L  T    +  +
Sbjct: 5   LGKHNPRVKALLRLAQK-KGREKAGEFLVEGPHLVAEALRHG--KVRALYLTPEFASSPE 61

Query: 83  WDANL----PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLM 136
            +  +         V  + PQ + +     A  QG+      + S +L ++      LL+
Sbjct: 62  GEELIRKAEARKVEVFGLAPQLLAR-AADTATPQGVLAVV-EMPSASLPSLLQVELPLLV 119

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           ++D + DP N+G I+R+A A +  G++  K           ++ +GA+  +P ++  +  
Sbjct: 120 IVDGLQDPGNLGTIVRTAQAVAATGVVVLKGSVDPFHPRAVRATAGAIFRLPVVKGPSAE 179

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           + L  + + G + +      + P          AL++G+EG G  P     A    ++ M
Sbjct: 180 EVLPLLRTAGIELVVADPRGEVPFYAHSFLGPTALVIGSEGGGPGPVWSTLA-RRVYIPM 238

Query: 257 PGIIKA 262
           PG  ++
Sbjct: 239 PGKTES 244


>gi|281206723|gb|EFA80908.1| hypothetical protein PPL_06143 [Polysphondylium pallidum PN500]
          Length = 520

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 97/225 (43%), Gaps = 24/225 (10%)

Query: 75  KNALARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------- 126
           KN  A +D           +  V  Q +D +  K  VHQGL L+ +PL   TL       
Sbjct: 294 KNIGALVDILKKCEQLEVEIVPVDKQRLD-VFSKFRVHQGLVLDCSPLTITTLTGLSVPD 352

Query: 127 ----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               +A     L++ LD + DP N GAI+R+   F  DG+I T + S   S   +KS+SG
Sbjct: 353 MTEFEADNRYPLIIALDELWDPQNTGAIVRTCHYFGLDGVIVTDKGSIPVSPFASKSSSG 412

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGL 240
           A+E  P  +  +L   LQ   + G+  IG S      K +     +    L++G EG GL
Sbjct: 413 AIEEFPIFKCLSLASFLQASKARGWHIIGTSVSDPESKDITNVKIDKPTVLVIGNEGYGL 472

Query: 241 RPKTQETATSMAHLHMPG-------IIKALNVSNAAAVALYITQN 278
           + K       M  +   G        I +LN S    + ++  Q+
Sbjct: 473 KDKVVSHCNEMIMI--KGLQRSSNEKIDSLNASVTTGILIHHLQS 515


>gi|42524391|ref|NP_969771.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39576600|emb|CAE80764.1| RNA methyltransferase, TrmH family, group [Bdellovibrio
           bacteriovorus HD100]
          Length = 297

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 96/231 (41%), Gaps = 10/231 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANL 87
           + Q+   +     +   + + G H ++  L    +++      +        R   +  L
Sbjct: 38  RPQAHAPRENQIPRDWRVVI-GTHAINEVLKVRPKQVKGFWLRQGFENSGDLRDMNELAL 96

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALET--APLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +   V+      ++K        QG A+    AP          +  ++++LD + DPH
Sbjct: 97  KNHIKVELKAEAALEK---FGPSQQGAAIFVDGAPEFDMASLEGLDKSMVLILDGIEDPH 153

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILR++      G++  +  +   +  + K A G +EH+P    +N  +  +++   
Sbjct: 154 NLGAILRTSWLVGAQGVLIPEDRAVGLTPTVHKVACGGVEHVPVEETTNFANYAEELKKQ 213

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           G+   GLS   K+ + +    DK+   +G+E KG+R  T+     +  +  
Sbjct: 214 GYWIYGLSPRGKRSIFELELPDKVVWAIGSEDKGMRVTTERLCDELVFIPQ 264


>gi|170766883|ref|ZP_02901336.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
           TW07627]
 gi|170124321|gb|EDS93252.1| tRNA guanosine-2'-O-methyltransferase [Escherichia albertii
           TW07627]
          Length = 229

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASTAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTCPTCILMGQEKTGITKEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ELADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|119947098|ref|YP_944778.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37]
 gi|119865702|gb|ABM05179.1| tRNA guanosine-2'-O-methyltransferase [Psychromonas ingrahamii 37]
          Length = 234

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 9/155 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL---AKSASGALEH 186
           R   L + L+ V+  HN+ AI+R+A A     +     ++  E+        +A+G+   
Sbjct: 16  RQPDLTVFLEQVHKAHNLAAIVRTADAVGVSDV-----HATWENKTTQISGNTATGSQNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       L DA++ + + G Q I  + SDS     +       A+++G E  G+ P+  
Sbjct: 71  VNLHSHETLEDAVKALRAQGMQIIATNLSDSAIDFREVDYTKPTAILMGQEKHGISPEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G+ ++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDVIIPMVGMCQSLNVSVASALILYEAQRQR 165


>gi|78185098|ref|YP_377533.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
 gi|78169392|gb|ABB26489.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9902]
          Length = 279

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/271 (22%), Positives = 108/271 (39%), Gaps = 23/271 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LD 82
            R +   K+++  + +         + L G H +   L    +   +L+AT+    R  D
Sbjct: 8   SRRNPLVKRLRMLSSRP-GRDAEGLILLEGTHLLQELLWIGGQP-TELIATEAWFDRHAD 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
               L      + V    +   +       G+A      L P  +  +     +VLD + 
Sbjct: 66  LIQALDASVVWRRVTEAVLGASLST-VTPDGVACLCPITLLP--EPPKACDFWLVLDRIQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--------ISN 194
           DP N+G++LRSA+A     +             + ++++GAL  +P+ R        I +
Sbjct: 123 DPGNLGSLLRSALAADVQSVWMGSG-VDPLGGKVLRASAGALLQLPHRRFGPEQEKAIDD 181

Query: 195 LTDALQKMHSWGFQTIGL-SSDSK-----KPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           L  AL+ + + G Q +     D+       P  +       AL+LG EG GL P+ Q   
Sbjct: 182 LDQALRVLVAQGIQVVATLVPDASGPLPPIPYWELDWTKPTALVLGTEGAGLHPRLQACC 241

Query: 249 TSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
           T    L     +++LNV+ AAAV  L   + 
Sbjct: 242 THAVTLPHSSRVESLNVA-AAAVPLLLERRR 271


>gi|26250298|ref|NP_756338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli CFT073]
 gi|91213169|ref|YP_543155.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UTI89]
 gi|117625923|ref|YP_859246.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli APEC O1]
 gi|157156957|ref|YP_001465132.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218560723|ref|YP_002393636.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli S88]
 gi|218691934|ref|YP_002400146.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ED1a]
 gi|256025618|ref|ZP_05439483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 4_1_40B]
 gi|301028430|ref|ZP_07191676.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|306816001|ref|ZP_07450139.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307140350|ref|ZP_07499706.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli H736]
 gi|331644370|ref|ZP_08345499.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331655284|ref|ZP_08356283.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331659987|ref|ZP_08360925.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
 gi|26110728|gb|AAN82912.1|AE016769_27 tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli CFT073]
 gi|91074743|gb|ABE09624.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UTI89]
 gi|115515047|gb|ABJ03122.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli APEC O1]
 gi|157078987|gb|ABV18695.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E24377A]
 gi|218367492|emb|CAR05274.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli S88]
 gi|218429498|emb|CAR10462.2| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli ED1a]
 gi|222035359|emb|CAP78104.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli LF82]
 gi|281180697|dbj|BAI57027.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|294493140|gb|ADE91896.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IHE3034]
 gi|299878541|gb|EFI86752.1| RNA methyltransferase, TrmH family [Escherichia coli MS 196-1]
 gi|305850397|gb|EFM50854.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli NC101]
 gi|307555769|gb|ADN48544.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli ABU
           83972]
 gi|307628724|gb|ADN73028.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UM146]
 gi|312948212|gb|ADR29039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|323949890|gb|EGB45774.1| SpoU rRNA methylase [Escherichia coli H252]
 gi|323954946|gb|EGB50725.1| SpoU rRNA methylase [Escherichia coli H263]
 gi|331036664|gb|EGI08890.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H736]
 gi|331047299|gb|EGI19377.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli M718]
 gi|331053202|gb|EGI25235.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA206]
          Length = 229

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|323699577|ref|ZP_08111489.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           ND132]
 gi|323459509|gb|EGB15374.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           desulfuricans ND132]
          Length = 253

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 14/255 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVK 94
           Q+     +   +++ G   V   L +  +K+  +   K           D       P K
Sbjct: 2   QEHDRDKKDSKIYVVGNKPVKELLLDSPQKVDFVAFRKGRRDQAMEEILDLCRTAQVPYK 61

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIG 148
           +V  + +D +      HQG+A   A L    L+ +          L++ LD V D  N+G
Sbjct: 62  SVSAKELDYM--FRGNHQGVAARCAALDYTPLEQLLEEALQAPLPLIVALDQVQDTGNVG 119

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            + R+  A    G+I  + +     A   +S++GAL  +P  ++ NL +A++   ++ + 
Sbjct: 120 VLARTVYALGGAGLIVCQHHGAYIGAGAVRSSAGALNKLPVAKVGNLANAMKDCVNYDYT 179

Query: 209 TIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                L+ DS   +          LILG E KG+RP   + A    H+       +LNV+
Sbjct: 180 LYCARLAPDSDN-VYTADLQTPAVLILGNEEKGIRPGVAKFAQHSLHIPFLREFDSLNVA 238

Query: 267 NAAAVALYITQNHFA 281
            A A+ +        
Sbjct: 239 QAGAIIVSEFARRLG 253


>gi|153840022|ref|ZP_01992689.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
           parahaemolyticus AQ3810]
 gi|149746420|gb|EDM57441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio
           parahaemolyticus AQ3810]
          Length = 128

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 63/124 (50%)

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
                II  K  S   +A ++K A GA E +P IR++NL   ++ +   G   +G + ++
Sbjct: 1   AGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEA 60

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + Q      +A+++GAEG G+R  T+ET   +  + M G + +LNVS A+ + L+  
Sbjct: 61  THDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVASGICLFEA 120

Query: 277 QNHF 280
               
Sbjct: 121 VRQR 124


>gi|15966476|ref|NP_386829.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307300487|ref|ZP_07580267.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307318352|ref|ZP_07597787.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15075747|emb|CAC47302.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306896034|gb|EFN26785.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306904653|gb|EFN35237.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 275

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 12/250 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRK------IFQLLATKNALARLDWDANLPHPFP 92
           K R  +  +  F+     V   L    R+         LL         +  A  P   P
Sbjct: 23  KERDLTGRQGRFIAEGTVVLRMLAAAHREGRGIAAEAILLLESRVAGVAELLAQFPPDVP 82

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           V     +  D I G   +H+G+      + AP     +  +  S L++    +++  N+G
Sbjct: 83  VYVAASRVFDAIAGFN-MHRGVLALGRRDAAPGRDALIAGLPQSSLVLAACGISNHDNMG 141

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A AF  D ++              + + G++  +P+ R     + ++++ + GF 
Sbjct: 142 SLFRNAAAFGVDAVLMDSTSCDPMYRKAIRVSVGSVLTLPFAREGTAAELIERLQTAGFV 201

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             GLS      +       + AL++G EG+GL           A +     + +LNV+ A
Sbjct: 202 VWGLSPRGTADINAIPPAPRTALLVGTEGEGLPETILSQ-IRTARIRQRPGLDSLNVAMA 260

Query: 269 AAVALYITQN 278
           A +AL+   +
Sbjct: 261 AGIALHQVAS 270


>gi|59710710|ref|YP_203486.1| tRNA guanosine-2'-O-methyltransferase [Vibrio fischeri ES114]
 gi|59478811|gb|AAW84598.1| tRNA (Guanosine-2'-O-)-methyltransferase [Vibrio fischeri ES114]
          Length = 229

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 6/167 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SA 174
           LE    ++  L A R + L + L+ V+  +N+ AI+R+A A     I       P+E   
Sbjct: 3   LERYQRITSVLKA-RQTDLTLCLEEVHKANNVSAIVRTADATGIHKI---HAVWPTEQMQ 58

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
           +L  +++GA   +      N+ DA   +   G Q +  + SD+     +       A+IL
Sbjct: 59  MLGHTSAGARNWVDVETHKNIEDAFATLKEQGMQILATNLSDTAVDFREIDYTKPTAIIL 118

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G+E  G+  K    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 119 GSEKTGISKKALAMADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|325973155|ref|YP_004250219.1| spoU rRNA methylase family protein [Mycoplasma suis str. Illinois]
 gi|325989598|ref|YP_004249297.1| SpoU rRNA methylase family protein [Mycoplasma suis KI3806]
 gi|323574683|emb|CBZ40339.1| SpoU rRNA methylase family protein [Mycoplasma suis]
 gi|323651757|gb|ADX97839.1| spoU rRNA Methylase family protein [Mycoplasma suis str. Illinois]
          Length = 253

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 104/247 (42%), Gaps = 15/247 (6%)

Query: 46  PENLFLYGVHTVSAALNNPSRK--IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            + L L G  +V   L +   +  I  +  T++  + +     L    P        +  
Sbjct: 5   KKQLILNGKKSVLEILKDVELRKLIHHVYLTESQTSLISACKTLE--IPYSLQNSAWLKS 62

Query: 104 IVG-KEAVHQGLALETAPLLSPTLDAVRN---------SQLLMVLDHVNDPHNIGAILRS 153
           +    +A +  +          + +  +          S L+++++ + DP+N GAI+R+
Sbjct: 63  LQREFDAKYSNVFAVLNSRQQLSFEDFKQVLWKDQKNTSYLIVMVEKIQDPYNFGAIIRT 122

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
            VA   + II +   +   + V+ K++ G    +  I++ +L+ AL ++  + F +   S
Sbjct: 123 CVAAGVNYIIYSSSNNTKLNNVVLKTSQGYALKMQLIQVKDLSKALAELKKFNFLSYAAS 182

Query: 214 SDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             S  K        ++  ++LG EG+G+ P+ + +      + M   +++LNVS A  + 
Sbjct: 183 LKSPSKNYFSVKYENRTIIVLGNEGEGISPRLENSVDYRIKIPMNNGVESLNVSVANGIL 242

Query: 273 LYITQNH 279
           +Y     
Sbjct: 243 IYEVLRQ 249


>gi|225155853|ref|ZP_03724339.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224803403|gb|EEG21640.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 254

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 95/241 (39%), Gaps = 17/241 (7%)

Query: 51  LYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L G+  V A     +   R+++    T   L  +     L      + V P  + KI G 
Sbjct: 8   LCGLPAVKARFQRDAASFRRLYFDYETGRKLGIICKALALAKKV-YRCVEPAELAKIAGT 66

Query: 108 EAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              H G+          APL        +    L++LD + + HN+GAI R+A  F    
Sbjct: 67  -LHHGGVVAVVDEPALRAPLPREMRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAH 125

Query: 162 IITT-KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           II      +        + A G LEH+   R+  L     ++   G++ +G ++      
Sbjct: 126 IIIPAHASAALPGESAHRIAEGGLEHLTLWRVPTLARFCAELREAGYEVVGAATRGGALT 185

Query: 221 EQEIKND-----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              +          AL+LG E  GL  +  +  T +  +   G I++LNVS AAA+ ++ 
Sbjct: 186 LPALTGGGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFA 245

Query: 276 T 276
            
Sbjct: 246 L 246


>gi|323307222|gb|EGA60505.1| Mrm1p [Saccharomyces cerevisiae FostersO]
          Length = 295

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 104/283 (36%), Gaps = 59/283 (20%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            ++YG ++V AAL NPSR     L     +               + V    ++ +    
Sbjct: 8   EYVYGTNSVYAALLNPSRNCHSRLLYHGTIPSKILQXVDEMKVTTELVDKHRLNLLTNY- 66

Query: 109 AVHQGLALETAPLLSPTLDAV----------------------------------RNSQL 134
            VH  +ALET PL    +  +                                  +   L
Sbjct: 67  GVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHELPYGTKTDAKKFPL 126

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + LD + DPHNIGAI+RSA     D I+ ++R     + V++K++SGALE +P   +  
Sbjct: 127 GLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTSSGALELLPIFYVDK 186

Query: 195 LTDALQKMHSWGFQTI-------GLSSDS--KKPLEQEIKND-----KIALILGAEGKGL 240
             +   K    G  T          S      K +     N       + L++G E +G+
Sbjct: 187 PLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNELPVVLVVGNESQGV 246

Query: 241 RPKTQETATSMAHLHMPG----------IIKALNVSNAAAVAL 273
           R   +  +     +   G          I+ +LNVS A A+ +
Sbjct: 247 RTNLKMRSDFFVEIPFGGIEKGNRAPEPIVDSLNVSVATALLI 289


>gi|284929527|ref|YP_003422049.1| rRNA methylase [cyanobacterium UCYN-A]
 gi|284809971|gb|ADB95668.1| rRNA methylase [cyanobacterium UCYN-A]
          Length = 218

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++++ V+ PHN+ AI+R+  A     +    +    +    +K + G+ + +  
Sbjct: 16  RQPHLTVLIEDVHKPHNLSAIIRTCDAVGILDLHVVNQN--GKYPTFSKVSQGSEKWVFI 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++ DA+  +    F+      S +          + +A++LGAE  G+  +  +  
Sbjct: 74  TTYISIDDAINALKRRKFKIYAAHFSKTAIDYRNVNYTEPVAILLGAEKWGVSKEAAQLV 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAAV L+  Q   
Sbjct: 134 DGHITIPMLGMVQSLNVSVAAAVILFEAQRQR 165


>gi|312199666|ref|YP_004019727.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
 gi|311231002|gb|ADP83857.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
          Length = 281

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 8/241 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   +  AL    R    +L + N L  +   A L 
Sbjct: 31  DYVALTDVVLRRRKEPAEGLFIAEGERVIQRALRAGYRA-RSVLVSPNRLDAVP--AELG 87

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              PV    P+ + KI G E VH+G LA           + +  +  ++VL+ +    N+
Sbjct: 88  PEVPVYLAGPELMAKITGFE-VHRGALAAMARHPARDPAELLSWALRVLVLEDLVSHTNL 146

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+ RSA     D I+ + R +        + + G +  +PY R+     AL  +   GF
Sbjct: 147 GAVFRSAAGLGMDAILLSPRCADPLYRRSVRVSMGEVFAVPYARLDPWPAALDTLADRGF 206

Query: 208 QTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +T+ L+  +          + + ++A++LG EG+GL    Q  AT    + M   + +LN
Sbjct: 207 ETLALTPAADAADLATLRPVADARLAVLLGTEGEGLSAAAQAAATRRVRIPMAAGVDSLN 266

Query: 265 V 265
           V
Sbjct: 267 V 267


>gi|293417112|ref|ZP_06659739.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
 gi|291431143|gb|EFF04136.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B185]
          Length = 229

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVTHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|307314264|ref|ZP_07593872.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|306906087|gb|EFN36606.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli W]
 gi|315062939|gb|ADT77266.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli W]
 gi|323376468|gb|ADX48736.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli KO11]
          Length = 229

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREVDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|293415850|ref|ZP_06658493.1| methyltransferase [Escherichia coli B185]
 gi|291433498|gb|EFF06477.1| methyltransferase [Escherichia coli B185]
          Length = 345

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFDVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLSE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|188994636|ref|YP_001928888.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594316|dbj|BAG33291.1| probable tRNA/rRNA methyltransferase [Porphyromonas gingivalis ATCC
           33277]
          Length = 254

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 97/258 (37%), Gaps = 17/258 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S  ++ ++  + +   + G   V   L  P  +   L+ T    A +    + P
Sbjct: 6   QIKFLRSLRER-KYRLREQAFAVEGPKLVGEML--PFYRCRMLVGT----AAMLRAVSTP 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H   V  +P     K +  +   Q L         P         L ++LD V DP N+G
Sbjct: 59  HDAEVVELPESFDFKRISTQTSPQPLMAV---FDLPAEPEPVVEGLTLLLDGVQDPGNVG 115

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILR+A  F    +      +   S  + +++ GAL  +    + N  D L      G  
Sbjct: 116 TILRTADWFGIRHVWLGTGSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIP 175

Query: 209 TIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIK 261
             G   + +   E  +    +   L+LG+EG G+ P+     T    +      + G  +
Sbjct: 176 VYGAFLEGQSLYEAPLPNFTEPAILVLGSEGHGISPEVAAEITDRLTIPASGLSVKGHTE 235

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A A+     +  
Sbjct: 236 SLNVAIATAILCSEWRRR 253


>gi|157373101|ref|YP_001481090.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
 gi|157324865|gb|ABV43962.1| tRNA guanosine-2'-O-methyltransferase [Serratia proteamaculans 568]
          Length = 231

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +     +       L  SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVHAV--WPTPRMRTLVSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +  +  ++     +        ++LG E  G+  +   
Sbjct: 72  NVKTHPTIVDAVTHLKDQGMQILATNLSARAVDFREVDYTRPTCVLLGQEKTGITEEALR 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|29833282|ref|NP_827916.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29610404|dbj|BAC74451.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 308

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/218 (23%), Positives = 87/218 (39%), Gaps = 8/218 (3%)

Query: 68  IFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           + +L AT  A  R              V       I  I       QGL      L +P 
Sbjct: 78  LVELFATAEAAERYADIIGEARDAGARVHLADEAVIADI-STTVTPQGLVGICRFLDTPF 136

Query: 126 LDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            + +    +L+ VL HV DP N G +LR A A   + ++ T       +    +++ G+L
Sbjct: 137 EEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGAEAVVLTDASVDLYNPKSVRASVGSL 196

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGL 240
            H+P      +  A+  +   G + +         L+ E+         A + G E  GL
Sbjct: 197 FHLPVAVGVPVDQAVAGLKDAGVRILAADGAGDDDLDDELDKGTMGGPTAWVFGNEAWGL 256

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +T+  A ++  + + G  ++LN++ AAAV LY +  
Sbjct: 257 PEETRALADAVVRVPIHGKAESLNLATAAAVCLYASAR 294


>gi|326478018|gb|EGE02028.1| RNA methyltransferase [Trichophyton equinum CBS 127.97]
          Length = 572

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 120/324 (37%), Gaps = 87/324 (26%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFP------- 92
           S P + F+YG   V+AA+    RK+  L      +++      W+               
Sbjct: 230 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 289

Query: 93  --VKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPT---------------------- 125
             VK V      T+DK+ GK   H G+ LE +PL  P                       
Sbjct: 290 AQVKHVTGPWKTTLDKMTGKR-PHNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQLAAQ 348

Query: 126 ---------------LDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                           DA R           ++LD + DP N+GAI RSA  F  D I  
Sbjct: 349 PEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGADAIAF 408

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS----------- 213
           + + S   S V+ K+A+GA E IP + + +++  +    + G++                
Sbjct: 409 SSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLVNDYT 468

Query: 214 -----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GI 259
                 +S   L  E+      L+LG EG GL+ K +  A S   +              
Sbjct: 469 RKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIRDDTAG 528

Query: 260 IKALNVSNAAAVAL--YITQNHFA 281
           + +LNVS A+A+    ++++   +
Sbjct: 529 VSSLNVSVASALLCEAFLSRRPLS 552


>gi|332970580|gb|EGK09567.1| tRNA/rRNA methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 278

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 100/263 (38%), Gaps = 17/263 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K  ++   +SR   +     L GVH + AAL        Q++ + + L+  D    
Sbjct: 20  NPTAKLAKALLTQSRQRKKAGQTVLEGVHLIEAALQANHIP-EQIIISYSGLSHPDVQQL 78

Query: 87  LPH------PFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTLDAVRNSQLL--MV 137
           L           +  V       I        G+  +    +    L  +++      ++
Sbjct: 79  LASLSGYNLDNKLTVVSDSVYQSITTLG---NGVEIMAIVNVPQHNLHTLKSPITTDCLI 135

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ V D  N+G +LR+A A     II TK  + + S    ++  GA   +         +
Sbjct: 136 LNDVQDNGNVGTLLRTAAAVGIKNIICTKGSAQAWSPKTMRAGMGAQFGLTIYEGIEADE 195

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L  +          SS +   + ++  N  +A ++G EG+G+     + AT    L  P
Sbjct: 196 VLSYLR---LPVYATSSHTDNIIYKQNLNRPVAWVMGHEGQGVCEAIMKEATP-VALPQP 251

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
              ++LNV+ A A+ +Y T    
Sbjct: 252 NGQESLNVAIAGALCMYETLRQR 274


>gi|326560889|gb|EGE11254.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
 gi|326570818|gb|EGE20843.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
          Length = 258

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 15/262 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +     R   +     + GVH V A L      + +L+ +++A    + 
Sbjct: 5   SKDNPIIKHTHALLGHHRTRKKSRQTVIEGVHLVEAYLKQTP-AVHRLIVSESATVHDEV 63

Query: 84  DANLPHPFP--VKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
              L    P  +  +      +I    E++     +    +   +L  +      ++LD 
Sbjct: 64  LPLLSQIDPKQITIISDTLYQQIRTLGESIS---VMAVIDIPHRSLPTISGD--CLILDG 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  NIG +LR+A A     +IT+   +   S    ++  GA   I       + + LQ
Sbjct: 119 LQDLGNIGTLLRTASAVGIQTVITSPNTAHLWSPKCLRAGMGAHFSISIYEHIAVNEILQ 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K+ +        SS + K +        IA +LG EG+G+R +    A     L  PG  
Sbjct: 179 KLKT---PLYATSSHTNKVIYDHDLTSPIAWVLGHEGQGVRDEFLNNA-IPIALPQPGGQ 234

Query: 261 KALNVSNAAAVALYI--TQNHF 280
           ++LNV  A +V  Y    Q H+
Sbjct: 235 ESLNVGIAGSVCFYEMLRQRHY 256


>gi|319786089|ref|YP_004145564.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464601|gb|ADV26333.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoxanthomonas suwonensis
           11-1]
          Length = 301

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 109/266 (40%), Gaps = 12/266 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R  R   +  +        ++ E + LYG++ V A      + I +L   +  +  L  
Sbjct: 38  ERPRRPSAEAPASPGAPPRPARREEVRLYGLNAVQAVFERRPQAIRKLYLLQARVHALRP 97

Query: 84  DAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD------AVRNSQLL 135
                + +    + V  + +D++    + H+G+  +        L+      A     L 
Sbjct: 98  LLAWCVQNRVGYRVVENEDLDRLAAS-SHHEGVVADVLRSDPLPLEDWLASLAPGAPALA 156

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD V +PHN GAILRSA  F    ++  +R + + S   A+ A G  E +  +R+   
Sbjct: 157 LWLDGVGNPHNFGAILRSAAHFGA-AVLLPERSTLALSGAAARVAEGGAEGVALVRLPGN 215

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             AL ++H+ GF +        + L       ++  ++GAEG+G+             + 
Sbjct: 216 DAALARLHAAGFASAATVVRDGEDLFAMQPQPRLVYVMGAEGEGMDAGLAGACQHRVSIA 275

Query: 256 MPGIIKALNVSNAAAVAL--YITQNH 279
             G +++LNV+ A AV L  +     
Sbjct: 276 GTGAVESLNVAAATAVFLAHWAAARR 301


>gi|282882505|ref|ZP_06291126.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
 gi|281297647|gb|EFA90122.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
          Length = 247

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 99/252 (39%), Gaps = 15/252 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++ YK ++ F QK ++  +     + G      A+   +     +        + + 
Sbjct: 8   SKDNKYYKYLKKFLQK-KYRYEENLFLVEGPIVFKEAIKYMTPSYIAI-----RDDKEEQ 61

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
             +L         P    +KI   ++  QG+    +            S   + LD ++D
Sbjct: 62  YKDLLGDRDYFIFPSHLFNKISDSQS-PQGI---ISYFPMVHKKFQEKSGKFLYLDKISD 117

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G I+R+A AF+  G+I ++      +    ++   ++  +P   +        ++ 
Sbjct: 118 AGNMGTIIRTADAFNLSGVIISEYSCDIYNPKTIRATMASIFRVPIYFLKE-----DELI 172

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              F+ I  + +  KP+++   +  + L++G E  G+  K  E A     + +   + +L
Sbjct: 173 KNNFKIIVSALEDSKPIKECDLSGDLILVIGNEAHGVSQKILERANLKVKIPIRDSVDSL 232

Query: 264 NVSNAAAVALYI 275
           N   AA +  Y 
Sbjct: 233 NAGVAAGIFAYE 244


>gi|237732567|ref|ZP_04563048.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908106|gb|EEH94024.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 363

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 119 RRQRAEETRVYGENACQALFQSRPDAIVRAWFVQSVTPRFKEALRWMAANRKAYHVVDEA 178

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ + +PHN+G ++RS  
Sbjct: 179 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVGQAGAQDCVLALEDIANPHNLGGMMRSCA 237

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SS 
Sbjct: 238 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRQAGYTVVMTSSA 296

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL      +K+ L+LG E + L             +   G ++ LNVS A  V L  
Sbjct: 297 KGKPLFTTTLPEKMVLVLGREREALPEAACSADDLCIAIDGTGKVETLNVSVATGVLLAE 356

Query: 274 YITQN 278
           +  QN
Sbjct: 357 WWRQN 361


>gi|309357472|emb|CAP35827.2| hypothetical protein CBG_18354 [Caenorhabditis briggsae AF16]
          Length = 645

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 114/268 (42%), Gaps = 26/268 (9%)

Query: 25  RNHRDYKK-MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           R  +  KK ++ +  K     + +   L+G+H+V  A+ +  R+   +   K    R + 
Sbjct: 18  RKAKLAKKSVEKYKAKKIEIPELKGEALFGLHSVLEAMRSGKREFHSVYLKKTLEKRAES 77

Query: 84  DANLPH--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           D  +              + +    +D++   + +H G+ ++ + L   +    +N  + 
Sbjct: 78  DDRIKEVLEKIKNMGIRKELLTDDQLDRLTEYQ-LHNGICMDASALKFSSFQ-PKNVSIF 135

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISN 194
           +  D V DP N+GAI RSA  F  DG+   K   P S +  + KS+ GALEH+P  +   
Sbjct: 136 V--DKVLDPGNLGAIGRSAWFFGADGVGLVKGRGPKSVTPSMIKSSCGALEHLPVQQFEG 193

Query: 195 LTDALQKMHSWGFQTIGL--------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +   ++ S G + +          +  + K L+Q   +  + ++LG EG G+      
Sbjct: 194 FHEFRDQIKSNGGEIVATCDPLAAKKAGITAKSLDQWKPHKTVGIVLGDEGVGISRGILN 253

Query: 247 TATSMAHLHMPG----IIKALNVSNAAA 270
              ++  +   G     + +LNVS  A 
Sbjct: 254 LCDTVISIAPVGEHQSNVTSLNVSVVAG 281


>gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
 gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
          Length = 241

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 105/250 (42%), Gaps = 18/250 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +  +K ++    K ++  +     +     +  A+ + +  I  L   +     + +
Sbjct: 5   SQANPKFKLIKKLRNK-KYRDKEGLFVIESRKLIEEAIKSNA-DIDFLFLREG----ISF 58

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           + N+P       V  + +   + +     G A       +  L     S  +++LDH++D
Sbjct: 59  EGNIP-----YLVFDENLFAKLSELKSPDGYAAVIRKKEACDL----KSDRILLLDHISD 109

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+RSA AF    II TK      +    +++ G++     + +S   + ++K+ 
Sbjct: 110 PGNMGTIIRSAEAFGFSDIILTKGCVDIYNEKCLRASMGSVFRENIVELS--LEEIRKLK 167

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              ++ +    +     + +  ND I L +G E  GL    ++       + M G I++L
Sbjct: 168 K-NYRFLSSHMEGIDVRKYDSSNDSIILAIGNEANGLSEDIRKLTDDFIKISMQGKIESL 226

Query: 264 NVSNAAAVAL 273
           N + AA++ +
Sbjct: 227 NAAIAASIMM 236


>gi|323160738|gb|EFZ46674.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli E128010]
          Length = 229

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|187732340|ref|YP_001882364.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
 gi|187429332|gb|ACD08606.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii CDC 3083-94]
          Length = 229

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|326473173|gb|EGD97182.1| hypothetical protein TESG_04597 [Trichophyton tonsurans CBS 112818]
          Length = 572

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 120/324 (37%), Gaps = 87/324 (26%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFP------- 92
           S P + F+YG   V+AA+    RK+  L      +++      W+               
Sbjct: 230 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 289

Query: 93  --VKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPT---------------------- 125
             VK V      T+DK+ GK   H G+ LE +PL  P                       
Sbjct: 290 AQVKHVTGPWKTTLDKMTGKR-PHNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQLAAQ 348

Query: 126 ---------------LDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                           DA R           ++LD + DP N+GAI RSA  F  D I  
Sbjct: 349 PEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGADAIAF 408

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS----------- 213
           + + S   S V+ K+A+GA E IP + + +++  +    + G++                
Sbjct: 409 SSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLVNDYT 468

Query: 214 -----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GI 259
                 +S   L  E+      L+LG EG GL+ K +  A S   +              
Sbjct: 469 RKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIRDDTAG 528

Query: 260 IKALNVSNAAAVAL--YITQNHFA 281
           + +LNVS A+A+    ++++   +
Sbjct: 529 VSSLNVSVASALLCEAFLSRRPLS 552


>gi|15804192|ref|NP_290231.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15833780|ref|NP_312553.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. Sakai]
 gi|16131522|ref|NP_418108.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24114921|ref|NP_709431.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           301]
 gi|30065073|ref|NP_839244.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|74314114|ref|YP_312533.1| tRNA guanosine-2'-O-methyltransferase [Shigella sonnei Ss046]
 gi|82546080|ref|YP_410027.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii Sb227]
 gi|89110361|ref|AP_004141.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. W3110]
 gi|110807671|ref|YP_691191.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 5 str.
           8401]
 gi|157163132|ref|YP_001460450.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|168748698|ref|ZP_02773720.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|168753476|ref|ZP_02778483.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|168759772|ref|ZP_02784779.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|168766072|ref|ZP_02791079.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|168772380|ref|ZP_02797387.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|168779807|ref|ZP_02804814.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|168785528|ref|ZP_02810535.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|168798621|ref|ZP_02823628.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|170018119|ref|YP_001723073.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|170083158|ref|YP_001732478.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|188495946|ref|ZP_03003216.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|191167826|ref|ZP_03029632.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|193063862|ref|ZP_03044949.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194430057|ref|ZP_03062562.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194435953|ref|ZP_03068056.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|195936212|ref|ZP_03081594.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806132|ref|ZP_03248469.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208812795|ref|ZP_03254124.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208819105|ref|ZP_03259425.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209398863|ref|YP_002273131.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209921124|ref|YP_002295208.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SE11]
 gi|217324129|ref|ZP_03440213.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218551178|ref|YP_002384969.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|218556214|ref|YP_002389127.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI1]
 gi|238902742|ref|YP_002928538.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|253771507|ref|YP_003034338.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038852|ref|ZP_04872904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|254163579|ref|YP_003046687.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B str.
           REL606]
 gi|254795606|ref|YP_003080443.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|260857954|ref|YP_003231845.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|260870381|ref|YP_003236783.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|261224166|ref|ZP_05938447.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254776|ref|ZP_05947309.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285022|ref|YP_003501840.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293463975|ref|ZP_06664389.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|312972063|ref|ZP_07786237.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|331670492|ref|ZP_08371331.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331679743|ref|ZP_08380413.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|84029291|sp|P0AGJ3|TRMH_ECO57 RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029292|sp|P0AGJ2|TRMH_ECOLI RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|84029293|sp|P0AGJ4|TRMH_SHIFL RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|12518410|gb|AAG58795.1|AE005592_6 putative RNA methylase [Escherichia coli O157:H7 str. EDL933]
 gi|147866|gb|AAB00161.1| spoU [Escherichia coli]
 gi|290501|gb|AAA62004.1| spoU [Escherichia coli]
 gi|1790083|gb|AAC76675.1| tRNA mG18-2'-O-methyltransferase, SAM-dependen [Escherichia coli
           str. K-12 substr. MG1655]
 gi|13364001|dbj|BAB37949.1| putative RNA methylase [Escherichia coli O157:H7 str. Sakai]
 gi|24054164|gb|AAN45138.1| putative RNA methylase [Shigella flexneri 2a str. 301]
 gi|30043334|gb|AAP19055.1| putative RNA methylase [Shigella flexneri 2a str. 2457T]
 gi|73857591|gb|AAZ90298.1| putative RNA methylase [Shigella sonnei Ss046]
 gi|81247491|gb|ABB68199.1| putative RNA methylase [Shigella boydii Sb227]
 gi|85676392|dbj|BAE77642.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|110617219|gb|ABF05886.1| putative RNA methylase [Shigella flexneri 5 str. 8401]
 gi|157068812|gb|ABV08067.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli HS]
 gi|169753047|gb|ACA75746.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli ATCC 8739]
 gi|169890993|gb|ACB04700.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|187771590|gb|EDU35434.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4196]
 gi|188017001|gb|EDU55123.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4113]
 gi|188491145|gb|EDU66248.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 53638]
 gi|189002529|gb|EDU71515.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4076]
 gi|189359254|gb|EDU77673.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4401]
 gi|189364456|gb|EDU82875.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4486]
 gi|189369492|gb|EDU87908.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4501]
 gi|189374444|gb|EDU92860.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC869]
 gi|189378798|gb|EDU97214.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC508]
 gi|190902169|gb|EDV61912.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B7A]
 gi|192930577|gb|EDV83184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E22]
 gi|194411884|gb|EDX28201.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B171]
 gi|194425496|gb|EDX41480.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 101-1]
 gi|208725933|gb|EDZ75534.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4206]
 gi|208734072|gb|EDZ82759.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4045]
 gi|208739228|gb|EDZ86910.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4042]
 gi|209160263|gb|ACI37696.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC4115]
 gi|209754528|gb|ACI75571.1| putative RNA methylase [Escherichia coli]
 gi|209754530|gb|ACI75572.1| putative RNA methylase [Escherichia coli]
 gi|209754532|gb|ACI75573.1| putative RNA methylase [Escherichia coli]
 gi|209754534|gb|ACI75574.1| putative RNA methylase [Escherichia coli]
 gi|209754536|gb|ACI75575.1| putative RNA methylase [Escherichia coli]
 gi|209914383|dbj|BAG79457.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217320350|gb|EEC28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. TW14588]
 gi|218358719|emb|CAQ91377.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|218362982|emb|CAR00620.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI1]
 gi|226838817|gb|EEH70844.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 1_1_43]
 gi|238863706|gb|ACR65704.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli BW2952]
 gi|242379175|emb|CAQ33977.1| tRNA (Gm18) 2'-O-methyltransferase [Escherichia coli BL21(DE3)]
 gi|253322551|gb|ACT27153.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975480|gb|ACT41151.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253979636|gb|ACT45306.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|254595006|gb|ACT74367.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|257756603|dbj|BAI28105.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257766737|dbj|BAI38232.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O111:H-
           str. 11128]
 gi|260447330|gb|ACX37752.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|281603014|gb|ADA75998.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri 2002017]
 gi|290764895|gb|ADD58856.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321607|gb|EFE61043.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli B088]
 gi|309704053|emb|CBJ03399.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|310334440|gb|EFQ00645.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1827-70]
 gi|315138233|dbj|BAJ45392.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli DH1]
 gi|320177349|gb|EFW52351.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320185701|gb|EFW60459.1| tRNA guanosine-2'-O-methyltransferase [Shigella flexneri CDC
           796-83]
 gi|320191296|gb|EFW65946.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320201323|gb|EFW75904.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli EC4100B]
 gi|320639558|gb|EFX09166.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. G5101]
 gi|320644997|gb|EFX14027.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. 493-89]
 gi|320650264|gb|EFX18753.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H-
           str. H 2687]
 gi|320655616|gb|EFX23544.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661350|gb|EFX28774.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666364|gb|EFX33363.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323155304|gb|EFZ41487.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli EPECa14]
 gi|323166862|gb|EFZ52601.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella sonnei 53G]
 gi|323173260|gb|EFZ58889.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli LT-68]
 gi|323177656|gb|EFZ63240.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 1180]
 gi|323934804|gb|EGB31186.1| SpoU rRNA methylase [Escherichia coli E1520]
 gi|323939589|gb|EGB35795.1| SpoU rRNA methylase [Escherichia coli E482]
 gi|323944104|gb|EGB40184.1| SpoU rRNA methylase [Escherichia coli H120]
 gi|323959899|gb|EGB55547.1| SpoU rRNA methylase [Escherichia coli H489]
 gi|323971293|gb|EGB66538.1| SpoU rRNA methylase [Escherichia coli TA007]
 gi|323975130|gb|EGB70235.1| SpoU rRNA methylase [Escherichia coli TW10509]
 gi|324111545|gb|EGC05526.1| SpoU rRNA methylase [Escherichia fergusonii B253]
 gi|324116010|gb|EGC09936.1| SpoU rRNA methylase [Escherichia coli E1167]
 gi|325499457|gb|EGC97316.1| tRNA guanosine-2'-O-methyltransferase [Escherichia fergusonii
           ECD227]
 gi|326337349|gb|EGD61184.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1044]
 gi|326339847|gb|EGD63654.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|331062554|gb|EGI34474.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA271]
 gi|331072915|gb|EGI44240.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H591]
 gi|332345640|gb|AEE58974.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli UMNK88]
 gi|332751201|gb|EGJ81604.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           2747-71]
 gi|332996123|gb|EGK15750.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri VA-6]
 gi|332997752|gb|EGK17363.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-272]
 gi|333012867|gb|EGK32244.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-304]
          Length = 229

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|260599948|ref|YP_003212519.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
 gi|260219125|emb|CBA34480.1| tRNA guanosine-2'-O-methyltransferase [Cronobacter turicensis
           z3032]
          Length = 229

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P +    +A SA+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGNRMRTMASSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N+ DA+  + + G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VEVKTHRNIGDAVGHLKARGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 RLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|260846564|ref|YP_003224342.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|257761711|dbj|BAI33208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
          Length = 229

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|320157693|ref|YP_004190072.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|319933005|gb|ADV87869.1| tRNA (guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 228

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 5/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIP 188
           R + L + L+ V+ P+N+ A++R+A A     +       P+E    L  +++GA   + 
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAMIRTADATGLHKV---HAVWPTEQMKTLKNTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++ DA+  + + G Q +  + SDS     Q       A+ILG+E  G+  + +  
Sbjct: 73  VDTHDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A AV LY  Q   
Sbjct: 133 ADQDIIIPMVGMVQSLNVSVACAVILYEAQRQR 165


>gi|157413860|ref|YP_001484726.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388435|gb|ABV51140.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 276

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 103/263 (39%), Gaps = 19/263 (7%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
               +N+   K+ ++F ++       +   + G H +   L +      ++L T+  L +
Sbjct: 2   KITSKNNNLVKRFRTF-KRGSSPKHQDFFCIEGTHLIEELLKSGKNP-SKILVTEKWLRK 59

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
               +   H   +  V  + +   +       G+A        P          ++VLD 
Sbjct: 60  NQNLSRKFHQSLINIVTEEVLASAIST-INPDGIAALVEISTIPNYKFDTKDDFVLVLDR 118

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G++ R+A+A   D I      +      + +++SGA+ H+P++R     + + 
Sbjct: 119 IQDPGNMGSLFRTALAAGVDAIFLAGG-AHPLGQKVLRASSGAVFHLPFLRFDGTEEEIL 177

Query: 201 KMHSW--------GFQTIGL------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                        GF+          S    KP  +   +   ALILG EG+G+  K QE
Sbjct: 178 NSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWSRSTALILGNEGQGIHKKIQE 237

Query: 247 TATSMAHLHMPGIIKALNVS-NA 268
                  +    ++++LNV+  A
Sbjct: 238 AFNETITIPHSELVESLNVACVA 260


>gi|331658726|ref|ZP_08359670.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA206]
 gi|315300563|gb|EFU59792.1| RNA 2'-O ribose methyltransferase substrate binding protein
           [Escherichia coli MS 16-3]
 gi|331054391|gb|EGI26418.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA206]
          Length = 345

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAERDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|270265245|ref|ZP_06193507.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
 gi|270040879|gb|EFA13981.1| hypothetical protein SOD_l00950 [Serratia odorifera 4Rx13]
          Length = 231

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +      S      L  SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVHAVWPTS--RMRTLVSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  ++DA+  +   G Q +     ++     +        ++LG E  G+  +   
Sbjct: 72  NVKTHRTISDAVTHLKDQGMQILATHLSARAVDFREVDYTRPTCVLLGQEKTGITEEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|312898933|ref|ZP_07758321.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
           F0359]
 gi|310620095|gb|EFQ03667.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
           F0359]
          Length = 271

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 95/259 (36%), Gaps = 9/259 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++R  K +    Q+ ++  +   L   G   V  A++        L+A +  + R + 
Sbjct: 6   SRDNRLVK-LAVRLQQKKYRYEERRLIAEGFRIVEDAVHMGITDGICLVAAE-IVERPEL 63

Query: 84  DANLPHPFPV----KTVPPQTIDKIVGKEAVHQGLALETAPLLS--PTLDAVRNSQLLMV 137
                    V      +P +  +K+    +  QG+             L  V N + ++ 
Sbjct: 64  QNLQAESEKVGWEWYLLPDRIYEKVKETHSS-QGITAILPFFEYTFKNLPEVANERPILY 122

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L+ + DP N+G ILR+A A +   +  +       +    +SA GA+  +P ++  +L  
Sbjct: 123 LEAIQDPGNLGTILRTAAAANVGAVFLSPDCVDLYNGKTVRSAMGAIFKVPVVQNVSLER 182

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                        G    + K   Q        +  G EG GL     E       + M 
Sbjct: 183 ISAFCDEKKRILTGTLLGANKLYTQVDWRQPTVIAFGNEGNGLSQACAEACRQALTIPMK 242

Query: 258 GIIKALNVSNAAAVALYIT 276
              ++LN++ + AV LY  
Sbjct: 243 SHTESLNLATSVAVVLYKA 261


>gi|315498045|ref|YP_004086849.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315416057|gb|ADU12698.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 253

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 12/239 (5%)

Query: 39  KSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K R  +  + LF+  G   +     +P  +   +L T     RL    +LP   PV  VP
Sbjct: 20  KDRDLTGRQGLFMAEGKVVLERLFTSPVAETVSVLTTPE---RLGGLVSLP-DAPVYVVP 75

Query: 98  PQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
              ++++ G   +H+G       AP  + +      +  ++ L  + +  N+G ++R+A 
Sbjct: 76  QGVMNQVAGF-PIHRGYLALGRYAPKQALSERVSGTTARVLALYGIANTDNMGGLMRNAA 134

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
           AF  D ++              + + G    +P+ R  ++      +   G    GLS  
Sbjct: 135 AFGADAVLLDTTCCDPLYRKAIRVSVGGALEVPHYRTDDMVGT---LRGLGLTPYGLSPS 191

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               LE+ + + + A++ GAEG GL  +          + M G   +LNV+  + + LY
Sbjct: 192 GAVTLEEVMPDPRSAVLFGAEGPGLPAELMAAC-RTVRIDMHGGFDSLNVATTSGIVLY 249


>gi|330814214|ref|YP_004358453.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487309|gb|AEA81714.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB LSU rRNA Gm2251
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 235

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 14/235 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV-GK 107
            ++ G +T+        R I Q+L+TK    +++   NL        V  + I+KI    
Sbjct: 7   FWVGGKNTIHEISKWKRRTIKQVLSTK----KINTSENLQETL----VDQKKINKIFNDP 58

Query: 108 EAVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             VHQGLA    +T  L    +  + +   +++LD+VND  NIG+I+R+  AF    +I 
Sbjct: 59  NFVHQGLAALIEKTKFLKDKDIKNIPDHSNIVLLDNVNDIRNIGSIIRNCAAFEISHLII 118

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
            K+ +  +S  L KSASGA EHI +I++SNL  A+Q++   GF     + D+K+ +++  
Sbjct: 119 EKKIN-IDSHYLFKSASGATEHIQFIKVSNLNTAIQELKRNGFFVFSAALDAKQTMKEIS 177

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YITQN 278
              K  ++LG+EG+G+R    + +     +     I +LNVSN +A+   ++ QN
Sbjct: 178 FGSKNCIVLGSEGEGVRNLISKNSDEHFKIEHSSNIDSLNVSNTSAIIFNHLYQN 232


>gi|313620932|gb|EFR92105.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           S4-378]
          Length = 201

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 13/203 (6%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILR 152
            I+K+V     HQG+A + A      LD +             ++LD + DPHN+G+I+R
Sbjct: 61  KIEKVVS--GAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMR 118

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A +    GII  KR S   +  +AK+++GA+E++P +R++N+   ++++   G    G 
Sbjct: 119 TADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGT 178

Query: 213 SSDSKKPLEQEIKNDKIALILGA 235
            +           +  +A+++G+
Sbjct: 179 DAKGSSDYRTMNVDMPLAIVIGS 201


>gi|255531174|ref|YP_003091546.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
 gi|255344158|gb|ACU03484.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
          Length = 249

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 100/250 (40%), Gaps = 10/250 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           ++S +QK ++  +     + G+ ++   +++   ++  +       + L     LP    
Sbjct: 10  IKSLHQK-KYRKENGIFIIEGIKSIEEFIHSNY-QVHSIYYLAQYQSLLP---ALPANIK 64

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +  V    +DKI   +     LAL   P       A   +   +VLD V DP N+G I+R
Sbjct: 65  LFEVNNAELDKISTLQTPQGILALVNIPEPPLFKPATPKNLFSLVLDGVQDPGNMGTIIR 124

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A  F    II +       +    ++  G+L  +      +L   L  +        G 
Sbjct: 125 TADWFGFKNIICSNNCVEVYNPKTVQATMGSLSRVNIFY-EDLPGILTNVK---LPVFGA 180

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             D K   + +  N+ +  ILG EG+G+ P   +  T    +   G  ++LNV+ +AA+ 
Sbjct: 181 VLDGKSIYKTDWGNEGLV-ILGNEGQGITPPVMKLITHPVTIPRIGGAESLNVAISAAIL 239

Query: 273 LYITQNHFAK 282
                 +  K
Sbjct: 240 CADISRNLNK 249


>gi|194431220|ref|ZP_03063513.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
 gi|194420675|gb|EDX36751.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae 1012]
          Length = 229

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P +    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGNRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|260774740|ref|ZP_05883643.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609302|gb|EEX35454.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 227

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L   L+ V+ P+N+ A++R+A A     I       P++   L+ +++GA   +  
Sbjct: 16  RQADLTFCLEEVHKPNNVSAVIRTADATGIHKI---HAVWPNDMRTLSHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++   G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  ETHDSIGKAVAELKDQGMQILVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEEAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV +Y  Q   
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVIMYEAQRQR 164


>gi|291326958|ref|ZP_06126486.2| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291312042|gb|EFE52495.1| tRNA guanosine-2'-O-methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 226

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 3/156 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L+ ++ PHN+ AI+RSA A     I     +   +  +   SA+G+   +
Sbjct: 3   AMRQPDLTLCLEEIHKPHNVSAIVRSADAVGIHQIHA--IWPDQQVKLSVSSAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             I  ++  +A+  + S   Q +  + S+      +        +++G E  G+  +   
Sbjct: 61  KIISHTSTEEAIAHIKSQNMQVLATNLSEHAVDFREIDYTLPTCIMMGQEKTGISQQALA 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A     + M G++++LNVS A+A+ LY  Q    +
Sbjct: 121 LADKHIIIPMAGMVQSLNVSVASALILYEAQRQRQQ 156


>gi|91211908|ref|YP_541894.1| putative methyltransferase [Escherichia coli UTI89]
 gi|237705091|ref|ZP_04535572.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91073482|gb|ABE08363.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           UTI89]
 gi|226901457|gb|EEH87716.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 370

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 126 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 185

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 186 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 244

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  E++  I   N+ + L      G+  +  SS+
Sbjct: 245 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSE 303

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 304 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 363

Query: 274 YITQN 278
           +  QN
Sbjct: 364 WWRQN 368


>gi|305666461|ref|YP_003862748.1| putative rRNA methylase [Maribacter sp. HTCC2170]
 gi|88708728|gb|EAR00963.1| putative rRNA methylase [Maribacter sp. HTCC2170]
          Length = 268

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 103/260 (39%), Gaps = 7/260 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K       +SR   +     L G   ++ A+      I  +   K  ++  + D 
Sbjct: 11  QNPLIKNAVQLRDRSRERKKTGLFILEGKRELTLAIKANY-IIQTVFICKEIISDQEIDL 69

Query: 86  ---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHV 141
              N+   F +  V      K+  +E+  +G+            +  +R + L++V +  
Sbjct: 70  VLSNIHDGFELIEVTKIVYHKMAYREST-EGILAIVKGKNHSLENIRLRKNALILVAEAP 128

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
             P NIGA+LR+A A + D ++         +  + +S+ G +     I + + +  +  
Sbjct: 129 EKPGNIGALLRTADAANLDAVLIANPKGDLYNPNIVRSSVGCVFT-NQIGLGSTSQIIDF 187

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +          +  + +P  Q       A+++G E  GL  +    +T+   + M G I 
Sbjct: 188 LKKKQINLFCAALSASQPYTQVNFEKAAAIVVGTESTGLSQEWLNASTNNIIIPMEGEID 247

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++NVS +AA+ ++  +   +
Sbjct: 248 SMNVSVSAAILIFEAKRQRS 267


>gi|319762190|ref|YP_004126127.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
           BC]
 gi|330825998|ref|YP_004389301.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
           K601]
 gi|317116751|gb|ADU99239.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           BC]
 gi|329311370|gb|AEB85785.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           K601]
          Length = 258

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 12/259 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLD 82
            R++   K ++  +Q S    +   ++L G H  SAAL    R    + +     LA  +
Sbjct: 11  SRDNALLKDLRRLSQDSTAYRKQGRVWLEGDHLCSAALARGQRPAIAVFSESFWPLAPEE 70

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           +         +     Q I  +     +  G  L       P   A+      +VLD + 
Sbjct: 71  YAQAATKNVVIADALWQDISGLESPARM--GFVL-----PLPAQQALDAQSPTVVLDRLQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    I   K  +   S  + ++  GA   +  +   ++ D + ++
Sbjct: 124 DAGNVGSILRSASAFGFAQIAALKGTAALWSPKVLRAGMGAHFALRLVEGLDVQD-IDRL 182

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  SS     L +         I+G EG+G+ P  Q  A+    +  PG  ++
Sbjct: 183 R---VPLLATSSHQGDWLHRAQLPWPCGWIMGHEGQGVSPDLQRRASRHIRIVQPGGEES 239

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV  AAA+ L+ +    A
Sbjct: 240 LNVGAAAAICLHASAAARA 258


>gi|227883841|ref|ZP_04001646.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300919781|ref|ZP_07136256.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300950017|ref|ZP_07163967.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|300955360|ref|ZP_07167739.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300984896|ref|ZP_07177184.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|301047441|ref|ZP_07194520.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|301644318|ref|ZP_07244320.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|227839119|gb|EEJ49585.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 83972]
 gi|300300649|gb|EFJ57034.1| RNA methyltransferase, TrmH family [Escherichia coli MS 185-1]
 gi|300317732|gb|EFJ67516.1| RNA methyltransferase, TrmH family [Escherichia coli MS 175-1]
 gi|300408325|gb|EFJ91863.1| RNA methyltransferase, TrmH family [Escherichia coli MS 45-1]
 gi|300413134|gb|EFJ96444.1| RNA methyltransferase, TrmH family [Escherichia coli MS 115-1]
 gi|300450631|gb|EFK14251.1| RNA methyltransferase, TrmH family [Escherichia coli MS 116-1]
 gi|301077356|gb|EFK92162.1| RNA methyltransferase, TrmH family [Escherichia coli MS 146-1]
 gi|315285421|gb|EFU44866.1| RNA methyltransferase, TrmH family [Escherichia coli MS 110-3]
 gi|315292920|gb|EFU52272.1| RNA methyltransferase, TrmH family [Escherichia coli MS 153-1]
 gi|315296994|gb|EFU56274.1| RNA methyltransferase, TrmH family [Escherichia coli MS 16-3]
 gi|324008107|gb|EGB77326.1| RNA methyltransferase, TrmH family [Escherichia coli MS 57-2]
          Length = 218

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 60  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 257

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 111/284 (39%), Gaps = 38/284 (13%)

Query: 1   MNLISKKKSEKIFSLKDS-HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           + +I+  K+E I    +  H  K R  +                   +   + G   +  
Sbjct: 2   LKVITSNKNEDIIHFYNLIHDKKYREAN-------------------QLFIIEGFKLLDE 42

Query: 60  ALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           AL N  + I  ++  +    +         L     +  V    I K+         + +
Sbjct: 43  ALQN-QQTIVAIIINERVYDKEFETIFKYTLYDNVQIYKVSENVIKKLS--------VNI 93

Query: 117 ETAPLLSPT---LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           + +P+L+      +    +  +++LD++ DP N+G ILR+  AF+   +I         +
Sbjct: 94  DPSPILAIVKMKEETCDVNDNVLLLDNIQDPGNLGTILRTCFAFNVKQVI-FNNCVDLYN 152

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALI 232
           A   K++ GA+  I ++R ++    L+ +    F  I    D +   L +     K  L+
Sbjct: 153 AKTIKASMGAIFKINFLRFNSSKLTLEFLLKNNFYLIATILDKNAISLNELKIKQKYCLM 212

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G EG GL     + A+    + M    ++LNV+ A A+ LY  
Sbjct: 213 VGNEGHGLSQNFIDYASIKTMIKM-NQTESLNVAVATAIFLYEL 255


>gi|294673755|ref|YP_003574371.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294473842|gb|ADE83231.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 268

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 12/240 (5%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     +++  ++           +  AL    +    L   K+               P
Sbjct: 19  LTEAQLRNKLDAERGLFIAESPKVIRVALQAGYQPQALLCERKHITGDAADIIAACGDIP 78

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNI 147
           + T   + + ++ G       L              +          ++V+D V D  NI
Sbjct: 79  IYTGERELLAQLTGYTLTRGVLCAMRRKPELSVQQVLGSIPSGQKHRIVVIDGVVDTTNI 138

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA A   D ++ T+      +    + + G++  +P+  + +       + S G+
Sbjct: 139 GAIFRSAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPWTWLDSY----DTLRSLGY 194

Query: 208 QTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           QT  ++  D    L+  +    +++A I+G EG GL  +T   A     + M   + +LN
Sbjct: 195 QTAAMALTDKSISLDDPVLKQQERLAFIMGTEGDGLPQQTITNADFTVRIPMSHQVDSLN 254


>gi|311277429|ref|YP_003939660.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
 gi|308746624|gb|ADO46376.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae SCF1]
          Length = 229

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P +    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV---HAVWPGNRMRTMASTAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+ ++   G Q +    SDS     +        +++G E  G+  +  
Sbjct: 71  VSVKTHRTIGDAVAQLKGRGMQILATHLSDSAVDFREIDYTRPTCILMGQEKTGITEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|237785425|ref|YP_002906130.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758337|gb|ACR17587.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 324

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 105/281 (37%), Gaps = 42/281 (14%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTV 96
           KS    + +   + G + V  AL+    K  ++    +A  +      L      PV  +
Sbjct: 40  KSAGRRKEKKFLVEGFNGVEGALSAGVAK--EVFVADSAWDKFSTLRELAREQHVPVSVI 97

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAIL 151
             +    +  +   H G+   T  LLS ++++      R   L+ V   ++DP N G  +
Sbjct: 98  DDKAASAL-SETVSHSGVCA-TCQLLSTSVESCINRARRGRGLVAVGIDMSDPGNAGTFI 155

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A   D ++         +    +SA+G++  IP  R  ++T++L  + S GFQ + 
Sbjct: 156 RTADAVGADCVVFLGNSVDIHNGKTVRSAAGSVFRIPIGRERDITNSLADLSSAGFQIVA 215

Query: 212 LSSDSKKPLEQE-------------------------------IKNDKIALILGAEGKGL 240
            + D +  L+                                 +     A + G E  GL
Sbjct: 216 TTIDGETSLDDAADDAAQWRIRRVQATEGVGGTEDTGASSNPPMMTRPSAWLFGNEAHGL 275

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + A     + + G  ++ NV+ AAA+ LY      +
Sbjct: 276 STDVVDFANVRVRIPIRGSAESFNVAGAAAITLYEASRALS 316


>gi|308497766|ref|XP_003111070.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
 gi|308242950|gb|EFO86902.1| hypothetical protein CRE_04820 [Caenorhabditis remanei]
          Length = 698

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 109/266 (40%), Gaps = 22/266 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK---NALAR 80
           R+     K ++ +  K     + +   L+G+H V  A+ +  R    +   K   ++  R
Sbjct: 19  RKAKMAKKSVEKYKAKKIEIPEIKGEALFGLHAVLEAIRSGKRDFHSIYLKKAIEDSDTR 78

Query: 81  LDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           +     +     +K   +    +D++   + +H G+ ++ +PL     +        + +
Sbjct: 79  IREILQIIQELGIKKESLTDDQLDRLTEYQ-LHNGICMDASPLNFSNFE---TKNFSIFV 134

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISNLTD 197
           D V DP N+GAI RSA  F  DGI   K   P   +  + KS+ GALEH+P  +  N  +
Sbjct: 135 DRVLDPGNLGAIGRSAWYFGADGICLVKGRGPKTITPSMIKSSCGALEHLPVQQFENFHE 194

Query: 198 ALQKMHSWGFQTIGL--------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +     + +          +  + K L +      + ++LG EG G+  +      
Sbjct: 195 FRDSIKLNSGELVATCDPLAAEKAGITVKSLNEWKPKKTVGIVLGDEGVGISKEILNFCD 254

Query: 250 SMAHLH----MPGIIKALNVSNAAAV 271
           ++  +         + +LNVS  AAV
Sbjct: 255 TVISIAPTREHQSSVTSLNVSVVAAV 280


>gi|37678424|ref|NP_933033.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus YJ016]
 gi|37197164|dbj|BAC93004.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 228

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 5/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIP 188
           R + L + L+ V+ P+N+ A++R+A A     +       P+E    L  +++GA   + 
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAMIRTADATGLHKV---HAVWPTEQMKTLKNTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++ DA+  + + G Q +  + SDS     Q       A+ILG+E  G+  + +  
Sbjct: 73  VDTHDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A AV LY  Q   
Sbjct: 133 ADQDIIIPMVGMVQSLNVSVACAVILYEAQRQR 165


>gi|110806525|ref|YP_690045.1| putative methyltransferase [Shigella flexneri 5 str. 8401]
 gi|110616073|gb|ABF04740.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 345

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRMKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|300822421|ref|ZP_07102561.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300907694|ref|ZP_07125322.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300923462|ref|ZP_07139502.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300927918|ref|ZP_07143477.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|301303886|ref|ZP_07210005.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|301325334|ref|ZP_07218841.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|309797607|ref|ZP_07691995.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|300400630|gb|EFJ84168.1| RNA methyltransferase, TrmH family [Escherichia coli MS 84-1]
 gi|300420289|gb|EFK03600.1| RNA methyltransferase, TrmH family [Escherichia coli MS 182-1]
 gi|300464010|gb|EFK27503.1| RNA methyltransferase, TrmH family [Escherichia coli MS 187-1]
 gi|300525068|gb|EFK46137.1| RNA methyltransferase, TrmH family [Escherichia coli MS 119-7]
 gi|300840849|gb|EFK68609.1| RNA methyltransferase, TrmH family [Escherichia coli MS 124-1]
 gi|300847861|gb|EFK75621.1| RNA methyltransferase, TrmH family [Escherichia coli MS 78-1]
 gi|308118794|gb|EFO56056.1| RNA methyltransferase, TrmH family [Escherichia coli MS 145-7]
 gi|315254039|gb|EFU34007.1| RNA methyltransferase, TrmH family [Escherichia coli MS 85-1]
 gi|324019690|gb|EGB88909.1| RNA methyltransferase, TrmH family [Escherichia coli MS 117-3]
          Length = 218

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 60  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|215488946|ref|YP_002331377.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967980|ref|ZP_07782191.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
 gi|215267018|emb|CAS11463.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312287239|gb|EFR15148.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 2362-75]
          Length = 229

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILTTHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|317050128|ref|YP_004117776.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
 gi|316951745|gb|ADU71220.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. At-9b]
          Length = 231

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEH 186
           A+R   L + ++ V+ PHN+ A++R+A A     +       PS     +  +++G+   
Sbjct: 14  ALRQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV---HAVWPSVRMRTMVSASAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N+TDA+  + + G Q +  +  +K     +        +++G E  G+  +  
Sbjct: 71  VKVKTHRNITDAVSHLKTQGMQVLATNLSAKAVDFREIDYTRPTCILMGQEKTGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|158426093|ref|YP_001527385.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
           571]
 gi|158332982|dbj|BAF90467.1| SpoU rRNA methylase family protein [Azorhizobium caulinodans ORS
           571]
          Length = 281

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 98/246 (39%), Gaps = 8/246 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTV 96
           + R       LF+     V   L  +  R +  +L ++ +L R+ D    LP   PV   
Sbjct: 35  RERDLVGRRGLFMAEGEVVLRLLTAHGGRDLHSVLVSQASLPRIADALDLLPRNVPVHVA 94

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
               +D IVG   +H+G+               L ++    L++ L  + +  N+G I R
Sbjct: 95  GQAVMDAIVGFH-IHRGILAVGRARPQVPAPELLASLPERALVVALQGIANHDNMGGIFR 153

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  D ++              + + GA   +P  R     + ++ + + GF  + L
Sbjct: 154 NAAAFGADAVLLDSACCDPLYRKAIRVSVGASLIVPTARAGTTAEMMEAIAAAGFDLVAL 213

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           S   ++ L   +   + A + G EG GL P+    +T    + M     +LNV+  + + 
Sbjct: 214 SPSGRERLSDIVPGGRQAALFGTEGPGLPPEVLA-STRTISIPMAASFDSLNVATTSGIV 272

Query: 273 LYITQN 278
           L+    
Sbjct: 273 LHHLSR 278


>gi|218697372|ref|YP_002405039.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 55989]
 gi|256021345|ref|ZP_05435210.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|332282578|ref|ZP_08394991.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
 gi|218354104|emb|CAV00665.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli 55989]
 gi|332104930|gb|EGJ08276.1| tRNA guanosine-2'-O-methyltransferase [Shigella sp. D9]
          Length = 229

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|255947260|ref|XP_002564397.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591414|emb|CAP97644.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 597

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 121/349 (34%), Gaps = 92/349 (26%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ---------PENLFLYGVHTVSAALNNPSR 66
           KD    K     R ++   S  ++ +   +         P + F+YG   V AAL    R
Sbjct: 220 KDEPREKEPARPRAHRVTHSMPERVKDNVKVPDTIPYTTPASEFIYGTGAVEAALRCSRR 279

Query: 67  KIFQLLATKNALARL------DWDANLPHPFPVKTVPP---QTIDKIVGKEAVHQGLALE 117
           ++++L   ++    L           L     VK       + +DK+      H G  LE
Sbjct: 280 QLYKLYIYQSTEEELTAAKVTIRKLALSKNVAVKMAFAGWDRLMDKMSA-GRPHNGCILE 338

Query: 118 TAPLLSPTLDAVR----------------------------------------------- 130
            +PL    + +++                                               
Sbjct: 339 ASPLPKLPVRSLQAVPSISEEYFRTELAPQTREEAAVNGTDDRIQIHHPSPPPHGTEQRH 398

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              ++++LD V D  N+GAI+RS+     D I+   R S   S +  KS++GA E++P +
Sbjct: 399 RYPIVLLLDGVVDTGNMGAIIRSSYFLGVDAIVLAGRNSAPLSPITIKSSAGAAENMPIL 458

Query: 191 RISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKND------------KIALILGAE 236
            + N  D +Q+    G++             L+    +                +++G+E
Sbjct: 459 HVKNEVDFIQRSQQNGWRFYAADAPLPGSVQLDHIPADGDQSGAKLPITTAPSVIMMGSE 518

Query: 237 GKGLRPKTQETATSMAHLHM------------PGIIKALNVSNAAAVAL 273
             GL    +  A ++  +              P  I +LNVS AAA+ +
Sbjct: 519 ATGLSSHIKSHANAIISIPGARQSSILGVESDPARIDSLNVSVAAALLM 567


>gi|218680736|ref|ZP_03528633.1| rRNA methylase protein [Rhizobium etli CIAT 894]
          Length = 189

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 4/184 (2%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + I  I  ++   Q +         P  D   R+ +  + LD V DP N+G I+R+A A 
Sbjct: 1   KVIASITRRD-NPQMVVGIFEQRWKPLKDIRPRDGETWVALDRVRDPGNLGTIIRTADAA 59

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G+I     +   S    ++  G++  +P  R +   + +    S G   +       
Sbjct: 60  GASGVILVGEATDPFSLETVRATMGSVFAVPVARAT-PEEFIAWRKSAGVSIVATHLAGA 118

Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       + L++G E  GL  +    A ++A +   G   +LN++ A AV L+  
Sbjct: 119 VDYRTIDYRKKPVVLLMGNEQSGLPDQLAREADALARIPQQGRADSLNLAVATAVMLFEA 178

Query: 277 QNHF 280
           + H 
Sbjct: 179 RRHL 182


>gi|254432253|ref|ZP_05045956.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
           7001]
 gi|197626706|gb|EDY39265.1| RNA methyltransferase, TrmH family, group 3 [Cyanobium sp. PCC
           7001]
          Length = 229

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 12/168 (7%)

Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSPSES 173
           P     L AV   R + L ++L+HV  PHN+ AILRS  A        +    R      
Sbjct: 5   PRRFERLQAVLNRRMADLTVLLEHVEKPHNLSAILRSCDAVGVLEAHAVCLKGR-----L 59

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALI 232
                +A G+ + +P  R  +   ALQ +   GF+  G    ++             A +
Sbjct: 60  PTFNSTAQGSQKWVPLHRHPSAAAALQSLREQGFRLYGTHLSAEAVDYRSCDFTGPTAFV 119

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           LGAE  GL P+          + M G++++LNVS A A  L+      
Sbjct: 120 LGAEKWGLSPECAGLVDQAIVIPMSGMVQSLNVSVATATLLFEALRQR 167


>gi|269137386|ref|YP_003294086.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202]
 gi|267983046|gb|ACY82875.1| tRNA guanosine-2-O-methyltransferase [Edwardsiella tarda EIB202]
 gi|304557487|gb|ADM40151.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Edwardsiella tarda
           FL6-60]
          Length = 219

 Score =  166 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       P +S   L  +A+G+   
Sbjct: 3   AARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV---HAVWPGKSMRTLVSTAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++  A+ ++   G Q +  +  +      +        +++G E +G+  +  
Sbjct: 60  VNVKTHRDIATAVGELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A     + M G++++LNVS A+A+ LY  Q    +
Sbjct: 120 QLADRDIIIPMVGMVQSLNVSVASALILYEAQRQRQQ 156


>gi|291276915|ref|YP_003516687.1| putative rRNA methylase [Helicobacter mustelae 12198]
 gi|290964109|emb|CBG39953.1| putative rRNA methylase [Helicobacter mustelae 12198]
          Length = 251

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 9/247 (3%)

Query: 31  KKMQSFNQKSRH---TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           KK    +QK  H     + E+L +YG  T    L    + I ++  +K     +      
Sbjct: 2   KKQLRHDQKPTHNPAQPKQEDLIVYGKQTSLYILEQMPQIIKEVYFSKEMERGVFHQFAK 61

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
            H  P+  +  +    +  K   HQG+ L+ + L       ++ S+ L++L  + D  NI
Sbjct: 62  IHK-PILKIDNKKAQAL-SKNGNHQGVFLKISALEYTPFKILKKSEKLLILHGITDTGNI 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+I RSA     DGI+       S   VL +++ GA+  +P+  + N+ D + ++ +   
Sbjct: 120 GSIFRSAYCLGVDGIVLCGVRGFSIEGVL-RTSVGAILQMPFCVVENILDVIHELKNE-- 176

Query: 208 QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +T+ L +D++   E  I    K AL LG+E  GL  +       +  + M     +LNV 
Sbjct: 177 KTLCLGADARGEEEGRIAGVQKWALFLGSENTGLPSQVLSKLDRILAIKMHRGFNSLNVG 236

Query: 267 NAAAVAL 273
            AA + +
Sbjct: 237 VAAGILI 243


>gi|260579765|ref|ZP_05847622.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
 gi|258602117|gb|EEW15437.1| rRNA methylase [Corynebacterium jeikeium ATCC 43734]
          Length = 306

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 118/312 (37%), Gaps = 56/312 (17%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQ 70
              + D   ++L     D++ + + ++KS      E L +  G   V   L +P      
Sbjct: 6   PIRIDDPRDSRLD----DFRNLNASDKKS-----GEQLIIAEGTLVVPRLLASPY-PTRA 55

Query: 71  LLATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKEAVHQGLAL--------- 116
           ++     L  ++ + +         F V  V  + + ++ G + +H+GL           
Sbjct: 56  VVGFPGKLRAIEAELSRALSSDDANFSVFEVSREVLKEVAGFD-MHRGLVASADRLPVNP 114

Query: 117 ---------------------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                                    +L+   +A   S ++ VL+ V D  NIG+I R+A 
Sbjct: 115 VGPVGPVSTASTGAPVGTGASAVEAVLNHLEEAADTSGVIAVLEGVGDHENIGSIFRNAA 174

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKMHSWGFQTIG 211
             + D ++     +        + + G +  +P+ R     +     L+ +   G++ + 
Sbjct: 175 GLNVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRDLELLQRRGYEVVA 234

Query: 212 LSSDSKKPLEQE-----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           L+      L +      ++  K+A+++GAEG GL       A   A + M     +LNV+
Sbjct: 235 LTPAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAADVRASIPMARGTDSLNVA 294

Query: 267 NAAAVALYITQN 278
            AAA+A Y    
Sbjct: 295 TAAAIAFYEAVR 306


>gi|241206031|ref|YP_002977127.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859921|gb|ACS57588.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 274

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 105/259 (40%), Gaps = 12/259 (4%)

Query: 26  NHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALN---NPSRKIF--QLLATKNALA 79
           +  D  ++  F + + R  +  EN F+     V   L       R  F  ++L  +N + 
Sbjct: 9   DSADDPRVAEFREIRERDLTGRENRFIAEGTVVLRMLAEAHAAGRGFFAEKILLLRNRVE 68

Query: 80  R-LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVRNSQLL 135
             L      P   PV       +D +VG   +H+G+           +  LDA+    L+
Sbjct: 69  GVLPILERFPADVPVYVAGADVLDGVVGFH-LHRGVLALGRRQDRGEAALLDALPERALV 127

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V   +++  N G++ R+A AF  D ++  +           + + G++  +P+ R    
Sbjct: 128 LVGCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKA 187

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L  +   GF    LS   K  +     + ++AL++G EG+GL           A + 
Sbjct: 188 LDVLVALAERGFAIWTLSPHGKTDIRAIPASTRMALVVGTEGEGLPEALLARF-QSARIP 246

Query: 256 MPGIIKALNVSNAAAVALY 274
               + +LN + A  +AL+
Sbjct: 247 QSEELDSLNAATATGIALF 265


>gi|313680632|ref|YP_004058371.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
           14977]
 gi|313153347|gb|ADR37198.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
           14977]
          Length = 258

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 2/188 (1%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV  +    + K+  +E     + +   P      D     + ++V   +  P N+GA+L
Sbjct: 69  PVYELSEAAMRKVSYRENPPALIGVFERPARR-LEDLPTRPRRVLVAVEIEKPGNLGAML 127

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           RSA A   D ++        E+  + ++++G +  +P   + +   A   +   G Q + 
Sbjct: 128 RSADASGADAVLVVGEAVDPENPNVIRASTGTVFTLPLAAVDH-DAARAWLRERGLQIVA 186

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            +  +++   +   +   A ++GAE +GL P   E A     + M G+  +LN S +AA+
Sbjct: 187 AAPRARRVYWEADLSGPTAFVVGAEDRGLPPGWLEAADLAVRIPMEGVADSLNASVSAAL 246

Query: 272 ALYITQNH 279
            LY     
Sbjct: 247 LLYEGLRR 254


>gi|27364301|ref|NP_759829.1| tRNA guanosine-2'-O-methyltransferase [Vibrio vulnificus CMCP6]
 gi|27360419|gb|AAO09356.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Vibrio vulnificus
           CMCP6]
          Length = 228

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 5/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIP 188
           R + L + L+ V+ P+N+ A++R+A A     +       P+E    L  +++GA   + 
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAMIRTADATGLHKV---HAVWPTEQMKTLKNTSAGARNWVE 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++ DA+  + + G Q +  + SDS     Q       A+ILG+E  G+  + +  
Sbjct: 73  VDTHDSIADAVSALKAQGMQVLVTNLSDSAVDFRQIDYTQPTAIILGSEKIGVSEQAKAL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A AV LY  Q   
Sbjct: 133 ADQDIMIPMVGMVQSLNVSVACAVILYEAQRQR 165


>gi|83816316|ref|YP_444648.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
 gi|83757710|gb|ABC45823.1| putative RNA methyltransferase [Salinibacter ruber DSM 13855]
          Length = 312

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 9/216 (4%)

Query: 67  KIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP- 124
            + +++ T          A L      V    P T+  +   E   QG+       L   
Sbjct: 95  PLVEVVVTPEGRGDPTVQALLEQLSVSVHETDPDTMTTLTDVE-TPQGVVAVAERRLRDP 153

Query: 125 --TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               + +  +  ++VLD + DP N+G +LR+A  F    ++     +      + ++ +G
Sbjct: 154 ETVPEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAG 213

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +   +P  R       L ++   G    G      +  +    +   AL+LG+E  GL  
Sbjct: 214 SHWALPLARTDAPGPFLDRLRRHGAALYGADLQGTRA-DAWGPDRPSALVLGSEAHGLSA 272

Query: 243 KTQETATSMAHLHMPGI---IKALNVSNAAAVALYI 275
              +       L         ++LNV+ A  + LY 
Sbjct: 273 AVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLYE 308


>gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 266

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 94/259 (36%), Gaps = 5/259 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDW 83
           ++   K+++S  +K ++          G+  ++ A         +F    T + L     
Sbjct: 9   SNPLVKRVRSLREK-KYRKAEGLFLAEGLRILTEAREEGVLPEMLFHA-GTAHPLGLELI 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D        V    P  + KI GK+     + +    L         ++ + +V   + D
Sbjct: 67  DDIEAAGGDVIVTTPDILSKISGKDNAQALVGVYRDRLTPLAALDRSSADIWIVAQSLRD 126

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+  A    G+I         S    +++ GAL      +     + L  + 
Sbjct: 127 PGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQSITQAR-WEEFLPWLR 185

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               Q IG S  + +  ++        L++G E +GL    +     +  + M G   +L
Sbjct: 186 GGAGQLIGTSLKATQDYQEPAYQSPSFLLVGNEAQGLPADYEAQCDLLVKMPMRGKADSL 245

Query: 264 NVSNAAAVALYITQNHFAK 282
           N + A AV  Y   N   K
Sbjct: 246 NAAVATAVMAYELLNQRRK 264


>gi|150865226|ref|XP_001384357.2| hypothetical protein PICST_31242 [Scheffersomyces stipitis CBS
           6054]
 gi|149386482|gb|ABN66328.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 423

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 130/341 (38%), Gaps = 75/341 (21%)

Query: 6   KKKSEKIFSLKDSHYAKL----RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
           +K+ E+    +++   ++    R NH D ++ +    ++         ++YG H+V +AL
Sbjct: 80  RKEHER-EQRENARAERMAKSGRENHSDSEQYRVSRDRTPIGKNSLFEYVYGTHSVRSAL 138

Query: 62  NNPSRKIFQLLATKNALAR-LDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETA 119
            +  R  +  L   N   R L   A   +    V+      ++ I+    VH G+ LET 
Sbjct: 139 ESGKRSSYSRLYVHNCQDRQLIKIAETKYGVKIVERSSKNDLN-ILCNNGVHNGVVLETK 197

Query: 120 PLLSPTL--------------------------------------DAVRNSQLLMVLDHV 141
            L   T+                                      + V    L + LD +
Sbjct: 198 SLELNTIHSLGACQDNEYKVTVYNDLDDAEVEIVKTVARTDPVEDEPVAKMPLGIFLDGI 257

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G I+RSA  F  D I+    ++     V  K++ GA++ I     +     + +
Sbjct: 258 TDPQNMGGIIRSAYYFGVDFIVVPGSHTARLGPVANKASVGAMDLIDIYETNESLKFIDR 317

Query: 202 MHSWGFQTIGLSSDSKKP-----------LEQEIKND--------------KIALILGAE 236
           + + G+  +  S+                +EQ++KN                + L++G+E
Sbjct: 318 IRANGWSVVSTSAKPSVDEINDLKSKHEKVEQQLKNKYVDMNELPNILSQTPVLLVMGSE 377

Query: 237 GKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273
           G+G+R   +  +  +  +        I+ +LNVS A+ + +
Sbjct: 378 GEGIRTHMKLRSDFLVGIDKGRKQDHIVDSLNVSVASGILI 418


>gi|308188674|ref|YP_003932805.1| RNA methylase [Pantoea vagans C9-1]
 gi|308059184|gb|ADO11356.1| putative RNA methylase [Pantoea vagans C9-1]
          Length = 232

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEH 186
           A+R   L + ++ V+ PHN+ A++R+A A     +       PS+     A +++G+   
Sbjct: 14  ALRQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV---HAVWPSQRMRTQASASAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  +    + DA++++     Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VKVVTHPTIGDAVKQLKQQKMQVLATHLSDDAVDFREIDYTLPTCILMGQEKTGITEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A A+ LY  Q   
Sbjct: 131 ALADRKIVIPMVGMVQSLNVSVACALILYEAQRQR 165


>gi|300939291|ref|ZP_07153965.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
 gi|300455798|gb|EFK19291.1| RNA methyltransferase, TrmH family [Escherichia coli MS 21-1]
          Length = 218

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A+R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 3   AMRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 60  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|302653550|ref|XP_003018599.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
           0517]
 gi|291182256|gb|EFE37954.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
           0517]
          Length = 573

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 119/324 (36%), Gaps = 87/324 (26%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFP------- 92
           S P + F+YG   V+AA+    RK+  L      +++      W+               
Sbjct: 231 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 290

Query: 93  --VKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPT---------------------- 125
             VK V      T+DK+ GK   H G+ LE +PL  P                       
Sbjct: 291 AQVKHVTGPWKTTLDKMTGKR-PHNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQLAAQ 349

Query: 126 ---------------LDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                           DA R           ++LD + DP N+GAI RSA  F  D I  
Sbjct: 350 PEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGADAIAF 409

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-- 222
           + + S   S V+ K+A+GA E IP + + +++  +    + G++     +     +    
Sbjct: 410 SSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLVNDYT 469

Query: 223 --------------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GI 259
                         E+      L+LG EG GL+ K +  A S   +              
Sbjct: 470 RKIPVMNSLSSLSSELTKAPCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSDNIRDDTAG 529

Query: 260 IKALNVSNAAAVAL--YITQNHFA 281
           + +LNVS A+A+    ++++   +
Sbjct: 530 VSSLNVSVASALLCEAFLSRRPLS 553


>gi|148241713|ref|YP_001226870.1| rRNA methylase [Synechococcus sp. RCC307]
 gi|147850023|emb|CAK27517.1| rRNA methylase [Synechococcus sp. RCC307]
          Length = 279

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 7/192 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----RNSQLLMVLDHVNDPHNI 147
           P++ V P+ +  +   ++    +AL   P  +P L A       S LL+ LD V DP N+
Sbjct: 77  PLQPVSPEVLQAMASTDSPDGVIALL--PHPAPGLQAPSWPQAKSPLLLALDRVQDPGNL 134

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ILR+A+A   D +      +      + ++++GA   +   R+ +L   L      G 
Sbjct: 135 GTILRTALAAGVDRVWLGGG-ADPWQPKVLRASAGAALELSMQRLDDLAPVLAMARERGV 193

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                  D  +P  Q   +    L+LG EG GL P   +   +   +     +++LNV+ 
Sbjct: 194 ACYAALRDGGQPYWQPDWHQPSLLLLGNEGSGLDPALVQQGVTALTIPHHAAVESLNVAV 253

Query: 268 AAAVALYITQNH 279
           AA V L      
Sbjct: 254 AAGVLLLERVRQ 265


>gi|294628442|ref|ZP_06707002.1| rRNA methylase [Streptomyces sp. e14]
 gi|292831775|gb|EFF90124.1| rRNA methylase [Streptomyces sp. e14]
          Length = 286

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 109/283 (38%), Gaps = 22/283 (7%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-- 63
              S ++ S + S  +  RR  R     ++F  K R           G   V  A  +  
Sbjct: 2   SSASPELISPRSSRVSAARRLAR-----RNFRGKDR------LFLAEGPQAVREAAGHRH 50

Query: 64  -PSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                + +L AT +A  R              V     + I  I       QGL      
Sbjct: 51  GGQATLVELFATLDAAERYADIIGEARTAGARVHLAADEVIADI-STTVTPQGLVGVCRF 109

Query: 121 LLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           L +P  D +    +L+ VL HV DP N G +LR A A   D ++ T       +    ++
Sbjct: 110 LDTPFADILAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRA 169

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGA 235
           + G+L H+P      +  A+  +   G + +      +  L+ E+         A + G 
Sbjct: 170 SVGSLFHLPVAVGVPVEQAVAGLKDAGVRILAADGAGEHDLDDELDDNTMGGPTAWVFGN 229

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E  GL   T+  A ++  + + G+ ++LN++ AAAV LY +  
Sbjct: 230 EAWGLPEDTRALADAVVRVPIHGMAESLNLATAAAVCLYASAR 272


>gi|302504246|ref|XP_003014082.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS
           112371]
 gi|291177649|gb|EFE33442.1| RNA methyltransferase, TrmH family [Arthroderma benhamiae CBS
           112371]
          Length = 573

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 118/321 (36%), Gaps = 87/321 (27%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFP------- 92
           S P + F+YG   V+AA+    RK+  L      +++      W+               
Sbjct: 231 SSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAKYASLAG 290

Query: 93  --VKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPT---------------------- 125
             VK V      T+DK+ GK   H G+ LE +PL  P                       
Sbjct: 291 AQVKHVTGPWKTTLDKMTGKR-PHNGMVLEASPLPKPPVLSFQTVVSKSNSHFLAQLAAQ 349

Query: 126 ---------------LDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                           DA R           ++LD + DP N+GAI RSA  F  D I  
Sbjct: 350 PEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGADAIAF 409

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-- 222
           + + S   S V+ K+A+GA E IP + + +++  +    + G++     +     +    
Sbjct: 410 SSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATLVNDYT 469

Query: 223 --------------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GI 259
                         E+      L+LG EG GL+ K +  A S   +              
Sbjct: 470 RKIPVVNSLSSLSSELTKAPCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSDNIRDDTAG 529

Query: 260 IKALNVSNAAAVAL--YITQN 278
           + +LNVS A+A+    ++++ 
Sbjct: 530 VSSLNVSVASALLCEAFLSRR 550


>gi|22218790|pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
          Length = 274

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 97/254 (38%), Gaps = 8/254 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K++    ++ +H        + G   +  AL      + Q L  +  L   +    
Sbjct: 8   NPRIKELARLLER-KHRDSQRRFLIEGAREIERALQAGIE-LEQALVWEGGLNPEEQQVY 65

Query: 87  LPHP----FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     +  V    + K+  ++     +AL   P  +          L++V   + 
Sbjct: 66  AALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRPSPDALILVAVGLE 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P N+GA+LRSA A   + ++         S  + ++++G +  +  +  S  ++ L  +
Sbjct: 126 KPGNLGAVLRSADAAGAEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLAASE-SEVLDWI 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  +  ++    +      +A+ +G E +GLR    E A +   + M G   +
Sbjct: 184 KQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADS 243

Query: 263 LNVSNAAAVALYIT 276
           LNVS +AA+ LY  
Sbjct: 244 LNVSVSAALLLYEA 257


>gi|218702420|ref|YP_002410049.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli IAI39]
 gi|218372406|emb|CAR20280.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli IAI39]
          Length = 229

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|294638299|ref|ZP_06716552.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291088552|gb|EFE21113.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 219

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       P +S   L  +A+G+   
Sbjct: 3   AARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV---HAVWPGKSMRTLVSTAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++  A+ ++   G Q +  +  +      +        +++G E +G+  +  
Sbjct: 60  VSVKTHRDIASAVSELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A     + M G++++LNVS A+A+ LY  Q    +
Sbjct: 120 QLADRDIIIPMVGMVQSLNVSVASALILYEAQRQRQQ 156


>gi|213163301|ref|ZP_03349011.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 124

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 60/123 (48%)

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +I  K  S   +A   K A GA E +P IR++NL   ++ +       +G + ++ 
Sbjct: 1   GVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEAD 60

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             L Q     ++AL++GAEG+G+R  T+E    +  + M G + +LNVS A  + L+   
Sbjct: 61  HTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAV 120

Query: 278 NHF 280
              
Sbjct: 121 RQR 123


>gi|68535492|ref|YP_250197.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68263091|emb|CAI36579.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 306

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 117/312 (37%), Gaps = 56/312 (17%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQ 70
              + D   ++L     D++ + + ++KS      E L +  G   V   L +P      
Sbjct: 6   PIRIDDPRDSRLD----DFRNLNASDKKS-----GEQLIIAEGTLVVPRLLASPY-PTRA 55

Query: 71  LLATKNALARLDWDANLP-----HPFPVKTVPPQTIDKIVGKEAVHQGLAL--------- 116
           ++     L  ++ + +         F V  V  + + ++ G + +H+GL           
Sbjct: 56  VVGFPGKLRAIEAELSRSLSSDDANFSVFEVSREVLKEVAGFD-MHRGLVASADRLPVNP 114

Query: 117 ---------------------ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
                                    +L    +A   S ++ VL+ V D  NIG+I R+A 
Sbjct: 115 VSPVGSVSTASTGDPAGTGASAVEAVLDHLEEAADTSGVIAVLEGVGDHENIGSIFRNAA 174

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKMHSWGFQTIG 211
             + D ++     +        + + G +  +P+ R     +     L+ +   G++ + 
Sbjct: 175 GLNVDAVLFGAATADPLYRRSVRVSMGHVLRLPWARFPGTTTTWQRDLELLQRRGYEVVA 234

Query: 212 LSSDSKKPLEQE-----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           L+      L +      ++  K+A+++GAEG GL       A   A + M     +LNV+
Sbjct: 235 LTPAGDTTLREATEAARMRGRKVAVMVGAEGPGLTEHAMRAADVRASIPMARGTDSLNVA 294

Query: 267 NAAAVALYITQN 278
            AAA+A Y    
Sbjct: 295 TAAAIAFYEAVR 306


>gi|315655485|ref|ZP_07908384.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490140|gb|EFU79766.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 283

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 18/265 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVS-AALNNPSRKIFQLLATKNALARLDWDANL 87
           DY +++  N + R     + LF+   + V   AL         LLA         + A  
Sbjct: 17  DYTQLKDVNLR-RSLEAEQGLFMAESNEVIGRALRAGFTPRSLLLAPHWLEIIRPFLAAS 75

Query: 88  PH--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           P         P PV       ++++VG       +A           + ++++  +++L+
Sbjct: 76  PATGFAPDGGPIPVFVASEDLLERLVGFHLHRGAIAAMLRKPAPDPREILKHASRVLILE 135

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A   D I+ T   +        + + G +  +P+ R+    D  
Sbjct: 136 DLVDHTNVGAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDP- 194

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQE------IKNDKIALILGAEGKGLRPKTQETATSMA 252
              H  GF+   L+  +  + L             K+ALI GAE  GL+P+T   A  + 
Sbjct: 195 ALFHEAGFELAALALREDSQDLRDYATELAGDPTRKVALIAGAERDGLKPQTIARADKVV 254

Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277
            + M   + +LNV+ A A+A + T 
Sbjct: 255 RIAMAHGVDSLNVAGAIAIACWATA 279


>gi|297565069|ref|YP_003684041.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
 gi|296849518|gb|ADH62533.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
          Length = 274

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 97/258 (37%), Gaps = 8/258 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K++    ++ +H        + G   +  AL      + Q L  +  L   +    
Sbjct: 8   NPRIKELARLLER-KHRDSQRRFLIEGAREIERALQAGIE-LEQALVWEGGLNPEEQQVY 65

Query: 87  LPHP----FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                     +  V    + K+  ++     +AL   P  +          L++V   + 
Sbjct: 66  AALGRVGRLALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRPSPDALILVAVGLE 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P N+GA+LRSA A   + ++         S  + ++++G +  +  +  S  ++ L  +
Sbjct: 126 KPGNLGAVLRSADAAGAEVVLVAGG-VDLYSPQVIRNSTGVVFSLRTLAASE-SEVLDWI 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  +  ++    +      +A+ +G E +GLR    E A +   + M G   +
Sbjct: 184 KQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADS 243

Query: 263 LNVSNAAAVALYITQNHF 280
           LNVS +AA+ LY      
Sbjct: 244 LNVSVSAALLLYEALRQR 261


>gi|302868678|ref|YP_003837315.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|315504850|ref|YP_004083737.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|302571537|gb|ADL47739.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
 gi|315411469|gb|ADU09586.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 269

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 14/243 (5%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIFQLLATKNALARLDWDAN 86
           DY+ +     ++R           G   +  AL    P+R         + LA LD    
Sbjct: 16  DYRALTDVELRTRWEPPHGLFIAEGELVLRRALRAGYPARSYLVDAKRVDQLADLDT--- 72

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                PV    P  + +  G   VH+G+       PL S   + +  ++ +++L+ VN+ 
Sbjct: 73  --GDAPVYAATPDVLQRATGFH-VHRGVLASFHRKPLRSAD-EVLAAARRVVILEDVNNH 128

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAI R A A   D ++ +   +        + + G +  +PY ++ +    L ++ +
Sbjct: 129 TNLGAIFRGAAALGVDAVLLSPTCADPLYRRSVRVSMGEVFAVPYAKLDSWPGGLDQVRA 188

Query: 205 WGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            GF  + ++        Q +     ++ AL+LGAEG GL    Q  +     + M   + 
Sbjct: 189 AGFTVLAMTPAPDAVPMQRLTPAQRERAALLLGAEGPGLTAAAQAASDVRVVIPMRRGVD 248

Query: 262 ALN 264
           +LN
Sbjct: 249 SLN 251


>gi|293605074|ref|ZP_06687466.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
           43553]
 gi|292816477|gb|EFF75566.1| TrmH family RNA methyltransferase [Achromobacter piechaudii ATCC
           43553]
          Length = 262

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 98/259 (37%), Gaps = 12/259 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLD 82
            R++   K +      +     P  + L GVH   A L +       +    + +   + 
Sbjct: 6   SRDNPAVKALAKLAGTAGKRGSP--VLLDGVHLCQAWLQHHGVPDQAIFDVERLSQPDIA 63

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             A          +  + +  +   E+  QG+A    P        V  +   ++ D + 
Sbjct: 64  ALAAAVPDAHCLALDSRLMQSLASVESG-QGVAFLVTPPSPEMPAEVDEN--CVLFDRIQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A     +      + + SA + +S  GA   +      +LT  L ++
Sbjct: 121 DPGNVGTLLRTCAAAGVKRVFLATGTAAAWSAKVLRSGQGAHFALAIHEHIDLTALLPRL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGII 260
                  +  + D  + L +     + A + G EG+G+ P   + A+    +   M   +
Sbjct: 181 R---VPLVATALDGARNLYEGRLPARCAWVFGHEGQGVDPVLLDAASHKVCIPHDMA-AV 236

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV  AAA+ L+  +  
Sbjct: 237 ESLNVGAAAAICLFEQRRQ 255


>gi|189462421|ref|ZP_03011206.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
 gi|189430859|gb|EDU99843.1| hypothetical protein BACCOP_03108 [Bacteroides coprocola DSM 17136]
          Length = 180

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L            L++VLD V   HNIGA+ R++ AF  + I      +      +
Sbjct: 11  EMNRLSVEEFKEAEKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEM 70

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQ--EIKNDKIALIL 233
            K+A GA   + +       +A+ ++H+ G+  + +   +    L+      N K A+++
Sbjct: 71  HKTALGAEYTVDWKYCKQTQEAVNELHAEGYTVLAIEQCEGSTMLDHLVLDPNKKYAIVM 130

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E KG++ +  +       +   G   +LNVS    + L+   N   K
Sbjct: 131 GNEVKGVQQEVVDMCDGCIEIPQYGTKHSLNVSVTTGIVLWEFANKMMK 179


>gi|269103907|ref|ZP_06156604.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163805|gb|EEZ42301.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 236

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ P+N+ AI+R+A A     +     +   +  + + +++G+   +
Sbjct: 14  ATRQPDLTVCLEQVHKPNNVSAIIRTADAVGVHKVHAV--WQAEQLRLHSHTSAGSRNWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                +N+TDA+  M + G Q +  + S+      +       A+ILG E  G+ P+   
Sbjct: 72  ELETHANITDAVHAMKAQGMQVLATNLSERAVDFREIDYTKPTAIILGGEKHGITPEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|156059718|ref|XP_001595782.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980]
 gi|154701658|gb|EDO01397.1| hypothetical protein SS1G_03872 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 600

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 117/310 (37%), Gaps = 79/310 (25%)

Query: 46  PENLFLYGVHTVSAAL---NNPSRKIFQLLATKNAL----ARLDWDANLP--HPFPVKTV 96
           P + FLYG   V AAL      SRK+++L   K        R      L       V  V
Sbjct: 266 PASEFLYGTSVVEAALNTQRRKSRKLYKLYIHKGEDRHNGDRDGALTRLAQRKGVEVAIV 325

Query: 97  PPQ----TIDKIVGKEAVHQGLALETAPLLSPTL-------------------------- 126
             Q    T+DK+  +   H G  LE +PL    +                          
Sbjct: 326 RGQDWLRTLDKM-SQGRPHNGYILEASPLPRLPVISLGSVIDQNDSFAIQLAPDHQSREE 384

Query: 127 --------------DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                         D+     L+++LD + DP N+GAILR+A+      +  + R S S 
Sbjct: 385 LEVNGNDTIINVPKDSTGRKPLVLLLDSIEDPQNLGAILRTALFMGVTAVAISVRNSASF 444

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-------SDSKKP------ 219
           + V+ K+++GA E I    ++     ++   + G++             DS+        
Sbjct: 445 TPVVFKASAGAAETIEIFSVNKPGGFIKDSQASGWKIYAAVAPPAPRKPDSRHMWPAASQ 504

Query: 220 -------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL---HMPGIIKALNVSNAA 269
                  L+  ++ D   L++G EG+GLR   ++ A     +    M G + +LNVS A 
Sbjct: 505 EFVWSHKLQDPLREDPCILMVGGEGEGLRKNLRDLADVHISIKGASMRGKLDSLNVSVAT 564

Query: 270 AVAL--YITQ 277
            +    +I Q
Sbjct: 565 GMLCGAFIRQ 574


>gi|82545036|ref|YP_408983.1| methyltransferase [Shigella boydii Sb227]
 gi|81246447|gb|ABB67155.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320186384|gb|EFW61118.1| putative methyltransferase [Shigella flexneri CDC 796-83]
 gi|332092607|gb|EGI97679.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Shigella boydii 3594-74]
          Length = 345

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  E +  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAELVQSITGDNIVNVLDDFRQAGYTVVTTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|291619492|ref|YP_003522234.1| TrmH [Pantoea ananatis LMG 20103]
 gi|291154522|gb|ADD79106.1| TrmH [Pantoea ananatis LMG 20103]
          Length = 233

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEH 186
           A+R   L + ++ V+ PHN+ A++R+A A     +       PS+     A +++G+   
Sbjct: 14  ALRQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV---HAVWPSQRMRTQASASAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  +   ++ DA+  + +   Q +  +  +      +        +++G E  G+  +  
Sbjct: 71  VNVVTHRSINDAISHLKTQNMQILATNLSADAVDFREIDYTKPTCILMGQEKTGITDEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRHIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|237703445|ref|ZP_04533926.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|226902709|gb|EEH88968.1| tRNA guanosine-2'-O-methyltransferase [Escherichia sp. 3_2_53FAA]
          Length = 229

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + D++  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDSVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|256379474|ref|YP_003103134.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255923777|gb|ACU39288.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 282

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 102/262 (38%), Gaps = 16/262 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALN---NPSRKIFQLLATKNALARLDW--DA 85
           +++   + + R           G   V  AL        ++ +L  T+ A  R     DA
Sbjct: 26  RRLTRRSGRDRAAR----FLAEGAQAVREALAWSAAGRGRVHELFVTEVAAERNQELVDA 81

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDP 144
                 P+  V  +    +  +    QG+     P+  P   A+  +++L+ VL  V DP
Sbjct: 82  AASSGVPISVVTDKAAAAL-SETVTPQGVVAVCDPVEVPLDAALTPSARLVAVLHGVGDP 140

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ++R A A   D ++         +    ++++G++ H+P  R  +  D      +
Sbjct: 141 GNAGTVVRVADAAGADAVVFAGDSVDVHNGKCVRASTGSVFHLPIARARSAEDVFAACRA 200

Query: 205 WGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            G + +     + + L             A + G+E  GL  +   +      + + G  
Sbjct: 201 AGLRLVAADGYATEDLVTADLRGDLAHPTAWVFGSEAHGLPDEVVTSLDGALKVPLYGGA 260

Query: 261 KALNVSNAAAVALYITQN-HFA 281
           ++LN++ AAAV LY +   H A
Sbjct: 261 ESLNLATAAAVCLYASARAHRA 282


>gi|193070365|ref|ZP_03051307.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|293413085|ref|ZP_06655753.1| conserved hypothetical protein [Escherichia coli B354]
 gi|192956304|gb|EDV86765.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli E110019]
 gi|291468732|gb|EFF11225.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 229

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|116670041|ref|YP_830974.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116610150|gb|ABK02874.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 298

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 96/279 (34%), Gaps = 34/279 (12%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--------IFQLLATKNALA 79
           RD  K+     + +           G   V  AL    ++        + ++ A++  L 
Sbjct: 21  RDVAKLAGRPARLKR----GQFLAEGPQAVREALVLHQKRMAAGEPGVVHEVFASEACLD 76

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMV 137
           R      L      +    + +  +       QG+       +   L+AV     +L+ V
Sbjct: 77  RYPEFEKLAEGVNARLATDEVLAAMADT-VNPQGIIA-VCAFVDVALEAVLDAGPRLIAV 134

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  V DP N G +LR+A A   D ++ T       +    +S +G+L H+P +   +L+D
Sbjct: 135 LCQVRDPGNAGTVLRAADAAGADAVVLTASSVDIYNPKAVRSTAGSLFHLPVVLGVDLSD 194

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ------------------EIKNDKIALILGAEGKG 239
                   G   +      +  L+Q                         A + G E +G
Sbjct: 195 LATACRERGIGVLAADGYGQLDLDQLQDENAARRLGNPGAESAYDLGRPTAWLFGNEAQG 254

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L       A     + + G  ++LNV  AA V LY +  
Sbjct: 255 LSDAELALADHRVAVPVYGAAESLNVGTAATVCLYASAR 293


>gi|146309755|ref|YP_001174829.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
 gi|145316631|gb|ABP58778.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter sp. 638]
          Length = 229

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P      +A SA+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV---HAVWPGNRLRTMASSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       +++A+ ++ + G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VTVKTHPTISEAVAQLKASGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|300815109|ref|ZP_07095334.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
 gi|300532001|gb|EFK53063.1| RNA methyltransferase, TrmH family [Escherichia coli MS 107-1]
          Length = 218

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 60  VQVKTHRTIGDAVAHLKGRGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|288918245|ref|ZP_06412600.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
 gi|288350415|gb|EFC84637.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EUN1f]
          Length = 320

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 104/238 (43%), Gaps = 9/238 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +     + G   V+AAL+  +  + +L   ++ALAR           PV+ V       +
Sbjct: 70  EEGLFLVEGAQAVTAALHADA--LVELFIGESALARHAQLTA-GTGVPVRFVTDAAAAAL 126

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             +    QGL    + L    L  +   +L+ V +  NDP N G ++RSA A   D ++ 
Sbjct: 127 -SETVTPQGLV-GVSELPGHRLADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAVVF 184

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE- 223
                        +S++G+L H+P I  ++    ++++   G Q +  S  + + L+   
Sbjct: 185 VGDSVDPFGGKCVRSSAGSLFHLPVIVAADALAVVRELRELGCQVLATSGHADRDLDDLA 244

Query: 224 ---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +     A + G E +GL   T  +A +   + + G  ++LN++ A+A+ +Y +  
Sbjct: 245 AAGVLAGPTAWVFGNEARGLTAATAASADTAVRVPVYGQAESLNLAVASALCMYASAR 302


>gi|110643892|ref|YP_671622.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli 536]
 gi|170681825|ref|YP_001745951.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|191170337|ref|ZP_03031890.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218707285|ref|YP_002414804.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli UMN026]
 gi|293407274|ref|ZP_06651198.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298383020|ref|ZP_06992615.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331665276|ref|ZP_08366177.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331685313|ref|ZP_08385899.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
 gi|110345484|gb|ABG71721.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli 536]
 gi|170519543|gb|ACB17721.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli SMS-3-5]
 gi|190909145|gb|EDV68731.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli F11]
 gi|218434382|emb|CAR15308.1| tRNA (Guanosine-2'-O-)-methyltransferase [Escherichia coli UMN026]
 gi|284923713|emb|CBG36810.1| tRNA (guanosine-2'-O)-methyltransferase [Escherichia coli 042]
 gi|291426085|gb|EFE99119.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli FVEC1412]
 gi|298276856|gb|EFI18374.1| tRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           FVEC1302]
 gi|331057786|gb|EGI29772.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli TA143]
 gi|331077684|gb|EGI48896.1| tRNA guanosine-2'-O-methyltransferase (tRNA
           [Gm18]methyltransferase) [Escherichia coli H299]
          Length = 229

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|303258070|ref|ZP_07344078.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
           1_1_47]
 gi|330998717|ref|ZP_08322446.1| RNA methyltransferase, TrmH family [Parasutterella
           excrementihominis YIT 11859]
 gi|302859089|gb|EFL82172.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
           1_1_47]
 gi|329576456|gb|EGG57968.1| RNA methyltransferase, TrmH family [Parasutterella
           excrementihominis YIT 11859]
          Length = 268

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 13/259 (5%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K  ++  Q SR   +       G+H     L +    + ++   + A    +    
Sbjct: 11  NPSIKLAKNLAQHSRAARKEGLSLAEGIHLARELL-SHPELVRKVFLREGAEKNFEISEI 69

Query: 87  LPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           L         V  +P Q    I   +    G+  E      P    ++  +  + LD V 
Sbjct: 70  LQKYLSLKISVVQLPSQIYASISPVDTSA-GIVCEIR---IPEEGKIKKDEDWIYLDGVQ 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILRSA+A     I  + + +   S  + ++A GA      I    L +  +K 
Sbjct: 126 DPGNVGTILRSALASGVTNIALSPQCAYVWSPKVLRAAMGAHFFCNIISSVELAEIKEK- 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              G   +   +   K L +E     +   + G+EG G+  K  E +     + +   ++
Sbjct: 185 --TGAVCLVADARGGKDLYEEKWGKGQTLWVFGSEGLGVSEKALELSDLTLLIPLDSRVE 242

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ AA+V L+  +   
Sbjct: 243 SLNVATAASVCLFEQRRRR 261


>gi|78185144|ref|YP_377579.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
 gi|78169438|gb|ABB26535.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9902]
          Length = 229

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---AVLAKSASGALEH 186
           R + L ++L+HV  PHN+ AILRS  A         + ++ S S        +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILRSCDAVGA-----LEAHAVSFSGRPRTYNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P     ++  A++ + + GF+  G     + K           A +LGAE  GL  + +
Sbjct: 73  VPLNDHPDIETAIKVLKAKGFRLYGTHLGTNAKDYRDCDFTGPTAFVLGAEKWGLSDQAR 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
           +       + M G++++LNVS A A  L+    Q   A
Sbjct: 133 DLMDEALFIPMRGMVQSLNVSVATATLLFESLRQRQAA 170


>gi|157149268|ref|YP_001456587.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|157086473|gb|ABV16151.1| hypothetical protein CKO_05108 [Citrobacter koseri ATCC BAA-895]
          Length = 229

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     I       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEI---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVSHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|51892235|ref|YP_074926.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51855924|dbj|BAD40082.1| rRNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 273

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 8/231 (3%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDKIVGKE 108
            GV  V  AL       + L   + A      +          P+  V P+ +++     
Sbjct: 37  EGVRLVEEALAAGVEVAYLLYTPELAERPRGAELLRTAAARGVPLHPVTPEALER-AADT 95

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
              QG+     PL S TLD +    L++VLD + DP N+G  +RS  A    G       
Sbjct: 96  RTPQGVVGVFRPL-SRTLDDL-GPGLVLVLDGLQDPGNLGTAIRSLEAMGGGG-AVVAGG 152

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
               +  + + A G+L  +P ++   + DAL  + + G +     +              
Sbjct: 153 VDPYNPKVVRGAMGSLFRLPVVKRP-IGDALAGLRAAGRRIYLAEAGGALAPWAVDLARG 211

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            A+++G+E  G  P+ +  A  +  + M G  ++LN   AA++  Y     
Sbjct: 212 AAVVVGSEAAGPSPEARALADGVVSIPMAGPTESLNAGVAASLLAYEAMRQ 262


>gi|238918012|ref|YP_002931526.1| tRNA guanosine-2'-O-methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|238867580|gb|ACR67291.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 230

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       P +S   L  +A+G+   
Sbjct: 14  AARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV---HAVWPGKSMRTLVSTAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++  A+ ++   G Q +  +  +      +        +++G E +G+  +  
Sbjct: 71  VSVKTHRDIAAAVGELKGQGMQILATNLSATAVDFREIDYTRPTCILMGQEKRGISAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A     + M G++++LNVS A+A+ LY  Q    +
Sbjct: 131 QLADRDIIIPMVGMVQSLNVSVASALILYEAQRQRQQ 167


>gi|261879397|ref|ZP_06005824.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
 gi|270333965|gb|EFA44751.1| TrmH family RNA methyltransferase [Prevotella bergensis DSM 17361]
          Length = 273

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 12/248 (4%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +     E LF+  G   V+  L   S     L+AT    A    + N      +  V   
Sbjct: 31  KKNRDKEGLFVAEGPKVVADLLAVAS--PLHLIATSEWFAGHRMEMNQWGKVKISEVTED 88

Query: 100 TIDKIVGKEAVHQGLALETAPLLS--PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + K   ++   Q + +   P      T   +   QL + LD V DP N+G I+R A  F
Sbjct: 89  ELRKASFQKTPQQVIGVFPIPETEAQDTATDMPGRQLCLALDGVQDPGNLGTIIRIADWF 148

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             + +  ++  + + +  + ++  G++  +    I NL   +  +   G    G   D +
Sbjct: 149 GIEHVYCSEDTADAYNPKVVQATMGSIARVKVHSI-NLPQFITHLPE-GVPIYGTLLDGQ 206

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVAL 273
               QE+  + + +++G EGKG+  + ++  T    +          ++LNV+ A AV  
Sbjct: 207 NIYTQELSANGL-IVMGNEGKGISEEIRKLVTHKLFIPSFPPDTDTAESLNVAIATAVTC 265

Query: 274 YITQNHFA 281
              +   +
Sbjct: 266 AEFRRRIS 273


>gi|269925979|ref|YP_003322602.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789639|gb|ACZ41780.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 266

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 105/265 (39%), Gaps = 11/265 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++    + +   Q    ++ G+  V +A        F+ L   + L R + 
Sbjct: 6   SRDNTKIKILRKLRSR-KFREQSGLCYVEGIRQVYSAFEEGFH--FEFLIVSSDLLRSEH 62

Query: 84  DANLPHPF---PVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMV 137
              L +      V+ +   Q I K +      QG+          +L+++  R    L+ 
Sbjct: 63  AWKLVNDLISNGVQVIDVDQNIFKSISLRDNPQGI-AGVVRQKWHSLESIDPREGLCLLA 121

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  V DP NIG+ILR+A A     +I              ++ +GA   +  I+ ++   
Sbjct: 122 LKAVQDPGNIGSILRTADAVGVRYVILLGDSVDPYDPNSVRAGAGATFTVKLIK-TSFER 180

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L   +      IG    +     +        L++G+E +GL  + Q +   +  + M 
Sbjct: 181 LLDWKNIHQIPVIGAVGGAPLNYSRVNYPYPCILLMGSERQGLDLREQSSCDMLVSVPMV 240

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G + +LN++ A +V LY   +  ++
Sbjct: 241 GKVDSLNLAVATSVILYEIFDQRSR 265


>gi|170780648|ref|YP_001708980.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155216|emb|CAQ00317.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 270

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 11/242 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDAN 86
           DY        +    +            +  AL   +  R +  L  T +    L  D  
Sbjct: 17  DYSHRTDVALRKAEGAGHGIYLAESALVLERALKAGHAPRSVLALGGTVDEALALVGD-- 74

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRNSQLLMVLDHVNDPH 145
                PV T P + + ++ G   +H+G+      P L      + +++ ++VL+ V DP 
Sbjct: 75  --RDVPVFTGPGELLAELTGY-VLHRGVVASLDRPALPSVASLLADARRVVVLEDVVDPT 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RS  A   D ++ T R +        + + G +  +P+ R     +    +   
Sbjct: 132 NVGAIFRSVGAIGADAVLVTPRCTDPFYRRAIRVSMGTVLQVPWTRTGEWPETRAALADA 191

Query: 206 GFQT--IGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF    + L+ D+    +     ++K+ ++LG+EG GL  +   +A ++  + M   I +
Sbjct: 192 GFHVAALALTPDAVSIRDFPAEDHEKLVIVLGSEGPGLSAEAIRSADTVVQIPMAHGIDS 251

Query: 263 LN 264
           LN
Sbjct: 252 LN 253


>gi|254228570|ref|ZP_04921995.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
 gi|151938952|gb|EDN57785.1| RNA methyltransferase, TrmH family [Vibrio sp. Ex25]
          Length = 236

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P +   L+ +++GA   +  
Sbjct: 25  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKV---HAIWPDKMRTLSHTSAGARNWVEV 81

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 82  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLA 141

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 142 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 173


>gi|284008963|emb|CBA75850.1| tRNA (guanosine-2'-O-)-methyltransferase [Arsenophonus nasoniae]
          Length = 225

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R   L + L++V+ PHNI A++R+A A     I     +  + +  L+ +A+G+   + 
Sbjct: 1   MRQPDLTVCLENVHKPHNISAVIRTADAVGISQIHA--IWCQNSTKSLSAAAAGSNHWVK 58

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               + +  A+    + G Q +            Q        +ILG E  G+  +    
Sbjct: 59  VKTHATIEKAISTCKAAGMQILAAHLTKQAIDFRQIDYTQPTCIILGQERTGISKQALAL 118

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A    H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 119 ADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 151


>gi|257069324|ref|YP_003155579.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256560142|gb|ACU85989.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 295

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/274 (21%), Positives = 103/274 (37%), Gaps = 25/274 (9%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           +K+ +   +S    Q     + G   V + L++      ++ AT+           L   
Sbjct: 19  RKVAALAGRSARRKQ-GRFRIEGPQAVRSLLSHRPDLAREVFATERTAGDHPELITLARD 77

Query: 91  FPV--KTVPPQTIDKIV--------------GKEAVHQGLALE-TAPLLSPTLDAV---- 129
             V  + V  Q +  +V              G     QG+    T P             
Sbjct: 78  AAVALRIVDEQIVRALVREPAGEGADDGTAAGTLVSPQGVVAVGTLPEADAAAATGALRA 137

Query: 130 ---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
               +   ++VL  V DP N+G ++R+A A   D ++ T+  +   S    ++A+G+L H
Sbjct: 138 LPGEDPATVVVLHEVRDPGNVGTLIRTADAAGADLVLLTRTSADPYSPKAVRAATGSLFH 197

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +P +  + + D L  + + G      S  +   L       +IA I G E  GL   T +
Sbjct: 198 LPVLTGAEIGDVLAALAAGGLTAAATSGHASSELFDVELPPRIAWIFGNEAHGLDRATLD 257

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + + G  ++LNV  AA V L+ T    
Sbjct: 258 AAPLRVRIPLAGRAESLNVHTAATVCLFETLRRR 291


>gi|148272114|ref|YP_001221675.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830044|emb|CAN00973.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 266

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 96/213 (45%), Gaps = 11/213 (5%)

Query: 58  SAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
             AL   +  R +  L  T +    L  D       PV T P + + ++ G   +H+G+ 
Sbjct: 46  ERALRAGHAPRSVLALGGTVDEALALVGD----RDVPVFTGPGELLAELTGY-VLHRGVV 100

Query: 116 LET-APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                P L      + +++ ++VL+ V DP N+GAI RS  A   D ++ T R +     
Sbjct: 101 ASLDRPALPTVASLLADARRVVVLEDVVDPTNVGAIFRSVGAIGADAVLVTPRCTDPFYR 160

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLE-QEIKNDKIAL 231
              + + G +  +P+ R     +    +   GF    + L+ D+    + +  ++ ++A+
Sbjct: 161 RAIRVSMGTVLQVPWTRTGEWPETRAALADAGFHVAALALTPDAVSIRDFRAEEHARLAI 220

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +LG+EG GL  +   +A ++  + M   I +LN
Sbjct: 221 VLGSEGPGLSAEAISSADTVVRIPMAHGIDSLN 253


>gi|323965917|gb|EGB61365.1| SpoU rRNA methylase [Escherichia coli M863]
 gi|327250779|gb|EGE62481.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli STEC_7v]
          Length = 229

 Score =  165 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|317495389|ref|ZP_07953758.1| SpoU rRNA methylase [Gemella moribillum M424]
 gi|316914448|gb|EFV35925.1| SpoU rRNA methylase [Gemella moribillum M424]
          Length = 177

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 5/164 (3%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           QG+      +    LD  +  + +++LD + DP N+G I+R+A AF+ D II  K  +  
Sbjct: 11  QGII-GVCRIEEKQLDITKYKK-VLILDRIQDPGNLGTIIRTADAFAFDCIILGKGTTSL 68

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIA 230
               + +S  G+  HI      ++   + +M    F     S  + K LE+       +A
Sbjct: 69  YGQKVIRSTQGSNFHIDCFENIDIKQLVTEMKE--FNIYATSLKADKYLEELDNITGHVA 126

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +I G EG G+  +      ++  ++MPG  ++LNVS AA + ++
Sbjct: 127 IIFGNEGSGVTDEILGEVNNLLKINMPGRAESLNVSIAAGIVMH 170


>gi|256255515|ref|ZP_05461051.1| tRNA/rRNA methyltransferase (SpoU) [Brucella ceti B1/94]
 gi|261222725|ref|ZP_05937006.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
 gi|260921309|gb|EEX87962.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
          Length = 249

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 17/254 (6%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I  +  + +F + D+   +L   +RD ++     ++ R           G   V   
Sbjct: 1   MQDIDTRSHDCVFVIDDADDIRLA-PYRDIREKDLVGRQQR-------FIAEGK-VVLNV 51

Query: 61  L--NNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116
           L  ++   +   LL  +N L  L +    LP   PV +VP   +D + G   VH+G+   
Sbjct: 52  LFSSSARFETESLLVLENRLGGLTEQLRQLPPGVPVYSVPQAIMDAVAGFH-VHRGILAV 110

Query: 117 ---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
              ++ P L   L A+    L++VL  +++  N+G+I R+A AF  D ++  +       
Sbjct: 111 GRRKSQPDLRDMLAALPQKSLVVVLCGISNHDNVGSIFRNAAAFEADCVLMDETCCDPLY 170

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
               + + GA   +PY     + D    +   GF  + L+  + + + +    ++ AL+L
Sbjct: 171 RKAIRVSVGAALKVPYFHGGTIDDINAALAEAGFNLLALTPSAPRSIYEATICERQALLL 230

Query: 234 GAEGKGLRPKTQET 247
           G EG+GL  +  E 
Sbjct: 231 GTEGEGLPSRLLER 244


>gi|45658662|ref|YP_002748.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|294827733|ref|NP_710968.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45601906|gb|AAS71385.1| rRNA methylase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|293385576|gb|AAN47986.2| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
          Length = 274

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 106/261 (40%), Gaps = 13/261 (4%)

Query: 31  KKMQSFN--QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANL 87
           +K+++ +  ++ +H       F+ G   +  A  +   K   +L +    L   ++    
Sbjct: 15  EKLKTISNLKEKKHRETSGLFFIEGYREILRAQKSGKIKFQNILFSPECFLGENEFSLIR 74

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDH 140
                   VP +  +K+  ++     +A  TA      LD  +N        + ++V++ 
Sbjct: 75  SIGTKNIKVPKKIFEKVSYRDRPDGLIA--TAFFFETGLDTFQNKSNIFKNLKPILVIEG 132

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V  P N+G ILR+A       ++         +  + ++++GAL  +    +  +    +
Sbjct: 133 VEKPGNLGTILRTAEGAGFHTVLVADPKLDLFNPNVIRASTGALFTLEV-YLGEIKLIYE 191

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +    ++T+ ++ ++ K         KIAL+ G+E  GL    +  +     L M G  
Sbjct: 192 ILKKNQYRTLAVTPEATKHYYNADLKGKIALVFGSEQYGLSTYARNNSDEYVSLPMFGES 251

Query: 261 KALNVSNAAAVALYITQNHFA 281
            +LN++ +A + +Y      +
Sbjct: 252 DSLNLAMSAGIVMYEVIRQVS 272


>gi|269965888|ref|ZP_06179981.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
 gi|269829441|gb|EEZ83682.1| tRNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 236

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P +   L+ +++GA   +  
Sbjct: 25  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKV---HAIWPDKMRTLSHTSAGARNWVEV 81

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 82  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLA 141

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 142 DQDIIIPMVGMVQSLNVSVASAVILYEAQRQR 173


>gi|256823639|ref|YP_003147602.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
           16069]
 gi|256797178|gb|ACV27834.1| tRNA guanosine-2'-O-methyltransferase [Kangiella koreensis DSM
           16069]
          Length = 231

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           TL + R   L + +D V+ PHN+ AI+R+A A     +          +     ++SG+ 
Sbjct: 14  TLLSNRQPDLTVFMDQVHKPHNLAAIVRTADAVGIGHVHAVFPEDVKFTG--HHTSSGSK 71

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +   + SNL   + +M + G Q +    SD+              L++G+E  G+  +
Sbjct: 72  RWVTTHKHSNLKSGIAEMKAKGMQVLAAHFSDTAVDFRTIDYTQPTCLLVGSELVGVSDE 131

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             E A     + M G++++LNVS A A+ LY  Q   +
Sbjct: 132 AAEIADQHVIIPMVGMVQSLNVSVATALILYEAQRQRS 169


>gi|90407844|ref|ZP_01216020.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3]
 gi|90311019|gb|EAS39128.1| putative tRNA methyltransferase [Psychromonas sp. CNPT3]
          Length = 228

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L ++L+ V+  HN+ AI+R+A A   + +  T+      + V   +A+G+   +  
Sbjct: 16  RQPELTVLLEDVHKSHNLAAIVRTADAVGVNDVHATRET--KTTKVCGVTATGSQNWVKI 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               N+ DA+  + + G Q I  + SD+     +       A+++G E  G+  +    A
Sbjct: 74  HTHENIEDAIAALRAQGMQIIATNLSDTAIDFREVDYTKPTAILMGQEKTGISAQALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G+ ++LNVS A+A+ LY  Q   
Sbjct: 134 DQDVIIPMLGMCQSLNVSVASALILYEAQRQR 165


>gi|332701318|ref|ZP_08421406.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551467|gb|EGJ48511.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 196

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 3/157 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L +V+D+V+DPHN+ AILRS  AF    +      S     +  KS++ A + +
Sbjct: 18  ARRQKGLTLVIDNVHDPHNVSAILRSCDAFGVPSVHLYYTTSA-FPVLGQKSSASARKWV 76

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              R S+ T   + +    FQ +    S+  KPL     +   A+ILG E  G  P+  +
Sbjct: 77  MRTRHSDATSMYRGLKDQNFQVLATGFSERAKPLTAWDLSAPTAVILGNEHNGASPELAQ 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHFAK 282
            A    ++ M G++++LNVS AAA+ LY   +  +AK
Sbjct: 137 VADGEIYIPMMGMVQSLNVSVAAAIILYEAWRQRWAK 173


>gi|288932987|ref|YP_003437046.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
 gi|290511781|ref|ZP_06551149.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|288887716|gb|ADC56034.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella variicola At-22]
 gi|289775571|gb|EFD83571.1| tRNA (guanosine-2'-O-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 229

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       PS     +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEV---HAVWPSSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|327395801|dbj|BAK13223.1| tRNA guanosine-2'-O-methyltransferase TrmH [Pantoea ananatis
           AJ13355]
          Length = 233

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEH 186
           A+R   L + ++ V+ PHN+ A++R+A A     +       PS+     A +++G+   
Sbjct: 14  ALRQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV---HAVWPSQRMRTQASASAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  +   ++ DA+  + +   Q +  +  +      +        +++G E  G+  +  
Sbjct: 71  VNVVTHRSINDAISHLKTQNMQILATNLSADAVDFREIDYTKPTCILMGQEKTGITDEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRHIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|149189234|ref|ZP_01867521.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
 gi|148836988|gb|EDL53938.1| tRNA guanosine-2'-O-methyltransferase [Vibrio shilonii AK1]
          Length = 228

 Score =  165 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 4/166 (2%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           LE    +   L A R   L ++L+ V+ P+N+ A++R+A A     +     +   +   
Sbjct: 3   LERYTRIQEVLKA-RQPDLTLLLEQVHKPNNVSAVIRTADAAGVHKVHAV--WPDEKMRT 59

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
           L+ +++GA   +       + DA++ + S G Q +  + S++             A+ILG
Sbjct: 60  LSHTSAGARNWVEVETHDTVADAVRTLKSQGMQVLATNLSENAVDFRDIDYTKPTAIILG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+       A     + M G++++LNVS A+A+ L+  Q   
Sbjct: 120 GEKHGITQDALTEADQDIIIPMVGMVQSLNVSVASALILFEAQRQR 165


>gi|188025415|ref|ZP_02958530.2| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
 gi|188023696|gb|EDU61736.1| hypothetical protein PROSTU_00272 [Providencia stuartii ATCC 25827]
          Length = 226

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L+ V+ PHN+ AI+RSA A     I     +   +  +   SA+G+   +
Sbjct: 3   AMRQPDLTICLEEVHKPHNVSAIVRSADAVGIHTIHA--IWPDQQVKLSVSSAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             I   +   A+ ++ S   Q +    S+      +        +++G E KG+  K  E
Sbjct: 61  NVISHPSTEAAISQLKSQNMQVLVTHLSEQAVDFREIDYTQPTCIMVGQEKKGISAKALE 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 121 LADKHIIIPMVGMVQSLNVSVASALILYEAQRQR 154


>gi|269120819|ref|YP_003308996.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
 gi|268614697|gb|ACZ09065.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
          Length = 256

 Score =  165 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 103/253 (40%), Gaps = 12/253 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++ YK ++  ++K ++  +       G   +   +N       +++  ++    L+   
Sbjct: 9   DNKFYKILRKLDKK-KYRDKNNIFKAEGEKFLKEKIN-----FTKIIIKESKYEYLENKY 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     +  +     D+I  +E   QG+ +  + LL+   +   +   +++LD V DP 
Sbjct: 63  KITQFNNLTILKDDLFDEISEQE-NSQGVIVLYSKLLTSIEEIDGD---VVILDDVQDPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG I+R+  A     +I TK      +    ++  G +     I  +      + +   
Sbjct: 119 NIGTIIRTMEASGFKNLILTKGSVDVYNPKTVRATMGGIFKSNIIYET-PERITEFLKDN 177

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            +Q I    D +          +K A I G EG G+     E+    A + + G + +LN
Sbjct: 178 NYQVISTLLDKNSIDYRDVELKEKNAYIFGNEGHGISDIFIESTDIKAIIPIYGDVDSLN 237

Query: 265 VSNAAAVALYITQ 277
           VS A+ + LY  +
Sbjct: 238 VSVASGIFLYKMR 250


>gi|309808395|ref|ZP_07702295.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
 gi|308168363|gb|EFO70481.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
          Length = 159

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 68/141 (48%), Gaps = 2/141 (1%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++LD++ DP N+G I+R+A A   DG+I + +     ++ + +S  G+  H+  ++ ++
Sbjct: 17  WVILDNLTDPGNVGTIIRTADAAGFDGVILSNQSVDLYNSKVQRSMQGSQFHLQIVQ-TD 75

Query: 195 LTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   L    + G        D   + L       ++ LI+G E  G+  + Q       +
Sbjct: 76  IEQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQLGLIIGNEAHGVSRQVQLECDHKIY 135

Query: 254 LHMPGIIKALNVSNAAAVALY 274
           + + G  ++LN + AA + +Y
Sbjct: 136 IPIKGKAESLNAAVAAGIMIY 156


>gi|318040451|ref|ZP_07972407.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
          Length = 231

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 6/167 (3%)

Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           P     L AV   R   L +VL+ V+ PHN+ AILR+  A             P      
Sbjct: 5   PRRFERLQAVLNRRMGDLTVVLEAVDKPHNLSAILRTCDAVGVLEAHVVSL--PGRPRTF 62

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGA 235
            K+A G+ + +P     ++   L  +   GF+  G       +             ++GA
Sbjct: 63  NKTAKGSQKWVPLHPHPSIETCLNGLKEKGFRIYGTHLSVDARDYRDCDFTGPSCFLMGA 122

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           E  G+  +          + M G++++LNVS AAA  L+       +
Sbjct: 123 EKWGMSDEALAMVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRER 169


>gi|255085776|ref|XP_002505319.1| predicted protein [Micromonas sp. RCC299]
 gi|226520588|gb|ACO66577.1| predicted protein [Micromonas sp. RCC299]
          Length = 513

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 114/314 (36%), Gaps = 60/314 (19%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK-IFQL 71
              +  H  K  +  R  +   +  ++ R  +      ++G + V A L    R+ I  +
Sbjct: 198 TRWQTRHDEK--KAARHARGDLTLAERVRGEA------VFGRNPVLAMLAARRREEISAV 249

Query: 72  LATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVGKEA--VHQGLALETAPLLSPTL 126
              + + A   R    A        +      ++ +VG +    H G+  + +PL    +
Sbjct: 250 WIQEGSDASRDRALLKAVQARGITPEYASKHDLNMLVGGDGRRPHNGVVADASPLTPTPI 309

Query: 127 DAVR--------------------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           D++                           +  + + LD + DP N+GA+LRSA      
Sbjct: 310 DSLPLPAEWATDRAGDGSGSSVDDNQSRPSDPPVWLALDEIVDPQNLGAMLRSAHFLGVA 369

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKP 219
           G++   + S   S V++K++SGALE +    +  +   LQ+    G+   G   +   + 
Sbjct: 370 GVVVCAKNSAPLSPVVSKASSGALERMDVRSVGVMPRFLQRCVEEGWDVFGADNAPDAED 429

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-----------------GI--I 260
           +          +++G EG GLR   +     +  +                    G   +
Sbjct: 430 VTAVSVARPSVVVVGNEGAGLRTNVRRACNRVVRIEGGGGAERGVGEAGVGEGSEGGDTV 489

Query: 261 KALNVSNAAAVALY 274
            +LNVS A  + L+
Sbjct: 490 DSLNVSVATGILLH 503


>gi|209550660|ref|YP_002282577.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536416|gb|ACI56351.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 274

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 102/253 (40%), Gaps = 11/253 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRK-----IFQLLATKNALAR-LDWDANLPHPFP 92
           + R  +  EN F+     V   L     +       ++L  +N +   +     LP   P
Sbjct: 23  RERDLTGRENRFIAEGTVVLRMLAEAHAQDRGFLAEKILLLRNRVDGVMPILERLPADVP 82

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           V       +D +VG   +H+G+           +  L+A+    L++V   +++  N G+
Sbjct: 83  VYVAEADVLDGVVGFH-LHRGVLALGRREDRGEAALLEALPERALVLVGCGISNHDNAGS 141

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A AF  D ++  +           + + G++  +P++R     D L  +   GF  
Sbjct: 142 MFRNAAAFRADALLLDETCCDPLYRKALRVSVGSVLSVPHLRGGKAMDVLLSLAERGFAI 201

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             LS   K  +     + ++AL++G EG+GL           A +     + +LN + A 
Sbjct: 202 WTLSPHGKTDIRAIPASARMALVIGTEGEGLPEALLARF-HSARIPQSEDLDSLNAATAT 260

Query: 270 AVALYITQNHFAK 282
            +AL+   +   +
Sbjct: 261 GIALFSMASAMGR 273


>gi|118138229|pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The
           Trmh Family From Porphyromonas Gingivalis
          Length = 257

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 97/258 (37%), Gaps = 17/258 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S  ++ ++  + +   + G   V   L  P  +   L+ T   L       + P
Sbjct: 9   QIKFLRSLRER-KYRLREQAFAVEGPKLVGEXL--PFYRCRXLVGTAAXL----RAVSTP 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           H   V  +P     K +  +   Q L         P         L ++LD V DP N+G
Sbjct: 62  HDAEVVELPESFDFKRISTQTTPQPLXAV---FDLPAEPEPVVEGLTLLLDGVQDPGNVG 118

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILR+A  F    +      +   S  + +++ GAL  +    + N  D L      G  
Sbjct: 119 TILRTADWFGIRHVWLGTGSADVFSPKVVQASXGALARVQPTPLKNTVDTLAYFRRQGIP 178

Query: 209 TIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIK 261
             G   D +   E  +    +   L+LG+EG+G+ P+     T    +      + G  +
Sbjct: 179 VYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDRLTIPASGLSVKGHTE 238

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A A+     +  
Sbjct: 239 SLNVAIATAILCSEWRRR 256


>gi|238809673|dbj|BAH69463.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 249

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 104/250 (41%), Gaps = 30/250 (12%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++   + ++     +   + G H V  AL             KN +  +  + 
Sbjct: 22  SNPKIKYLKEVQKDNK----SDYFLVSGYHLVQEALA------------KNLVIEIFEEE 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +         V    +  I         +AL   P        ++N   +++LD+V DP 
Sbjct: 66  SKSTYKTATLVKSNVLKSISSTMHPDGVVALCLKPKSQ-----IKNK--VILLDNVQDPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A  F  D +I+        +  + ++  GAL  +  I+ +N  D ++ +++ 
Sbjct: 119 NVGTIIRNAACFGFDTVIS---NVNFYNDKVVRATQGALFQVSLIKENNNEDLIKVLNNE 175

Query: 206 GFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G+  +  S D       E+K   +K+ LILG EG G+     +      ++ +    ++L
Sbjct: 176 GYFIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNLYKYCDQKVYIPI--EFESL 233

Query: 264 NVSNAAAVAL 273
           NV+ A+ + L
Sbjct: 234 NVAVASGIIL 243


>gi|16762567|ref|NP_458184.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144056|ref|NP_807398.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052646|ref|ZP_03345524.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213417916|ref|ZP_03351009.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425217|ref|ZP_03357967.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580806|ref|ZP_03362632.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647939|ref|ZP_03377992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289826480|ref|ZP_06545592.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25331661|pir||AF0969 tRNA (guanosine-2'-O-)-methyltransferase (EC 2.1.1.34) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504872|emb|CAD03250.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139692|gb|AAO71258.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 229

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|260435545|ref|ZP_05789515.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
 gi|260413419|gb|EEX06715.1| tRNA guanosine-2'-O-methyltransferase [Synechococcus sp. WH 8109]
          Length = 210

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---AVLAKSASGALEH 186
           R + L ++L+HV  PHN+ AILRS  A         + ++ S +        +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILRSCDAVGA-----LEAHAVSFNGRPRTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P     +   A++ + + GF+  G       K   +       A +LGAE  GL  + Q
Sbjct: 73  VPLHDHPDTETAIRHLKAKGFRLYGTHLGVDAKDYRECDFTGPTAFVLGAEKWGLTDQAQ 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
           +       + M G++++LNVS A A  L+    Q   A
Sbjct: 133 DLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVA 170


>gi|171691857|ref|XP_001910853.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945877|emb|CAP72678.1| unnamed protein product [Podospora anserina S mat+]
          Length = 680

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 118/331 (35%), Gaps = 82/331 (24%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENL--------FLYGVHTVSAALNNPSRKIFQLLATKN 76
           R  R+YK     +  +    +P  +        FLYG  +V AAL +  RK+++L   + 
Sbjct: 318 RPPREYKDDPFHDSDAYERPEPIGITYTTAASQFLYGSSSVEAALRSGRRKLYKLYIQQG 377

Query: 77  ALARLDWDA------------NLPHPFPVKTVPPQ---TIDKIVGKEAVHQGLALETAPL 121
              R   +A                  PV+ V  +    +   +     H G  LE + L
Sbjct: 378 DDVRESQNADDIKAEKVIRTLAKQKSVPVEVVSGKYGMRLMSKMSSSRPHNGFVLEASAL 437

Query: 122 LSPTLDAVR-------------------------------------------NSQLLMVL 138
             P + A+                                            +  L++VL
Sbjct: 438 PQPPIVALGAIPEDPAEYAAKPGFSVELGHQSAEDVAINGTNDFVYWRKSATHKPLVVVL 497

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+GAILRS   F    +  T       + V  K+++GA E +    I++L + 
Sbjct: 498 DRILDPVNLGAILRSVGFFGAAAVAITNYGGTKITPVALKASAGAAEEVTIFGINSLPEF 557

Query: 199 LQKMHSWGFQTIGLSSDS--------KKPLEQEIKND-----KIALILGAEGKGLRPKTQ 245
           L    + G++     +          +  L    K D        L+LG+EG+GL     
Sbjct: 558 LNASRANGWEVYAAVAQEPGATRQRRQVDLFDIEKTDPLKRTPCVLLLGSEGEGLDRLVV 617

Query: 246 ETATSMAHLH-MPGI--IKALNVSNAAAVAL 273
           + A    ++  M G   + +LNV+ A A+  
Sbjct: 618 KKADYELNIPSMAGQSVVDSLNVNVAGALLC 648


>gi|32475172|ref|NP_868166.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
 gi|32445713|emb|CAD78444.1| spoU rRNA methylase family protein [Rhodopirellula baltica SH 1]
          Length = 281

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 104/256 (40%), Gaps = 13/256 (5%)

Query: 38  QKSRHTSQPENLFLYG----VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93
           ++SR       + + G    +  + A L   +    +   +++A      +  +     +
Sbjct: 25  RRSRKRRAAGVVLVDGPRESLRAIEAGLKLTAFYEIEPKLSESAGPPDMPEQAVARQHAI 84

Query: 94  -----KTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVR-NSQLLMVLDHVNDPH 145
                + V  +   KI    +  + +A   AP   L   L+    N  L++VLD V  P 
Sbjct: 85  DSGVHRWVTSEVFRKIAYTASTDRCVAEFVAPDDSLEQLLERSSWNDGLILVLDRVEKPG 144

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+ RSA A     ++ +   S   +    + + GA+  +P    S  +     + + 
Sbjct: 145 NLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASGSE-SQMEAFLKTH 203

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G++   +  +  +PL       K+A++LG+E  GL  +    +     L M G + +LNV
Sbjct: 204 GYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWAGDSIDPVALPMAGHVDSLNV 263

Query: 266 SNAAAVALYITQNHFA 281
           S +AA+  +      +
Sbjct: 264 SVSAAIVAFEAVRQRS 279


>gi|301018980|ref|ZP_07183203.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
 gi|300399474|gb|EFJ83012.1| RNA methyltransferase, TrmH family [Escherichia coli MS 69-1]
          Length = 218

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 60  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|93005359|ref|YP_579796.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393037|gb|ABE74312.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 264

 Score =  165 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 117/276 (42%), Gaps = 24/276 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           E I S K++            K +++   ++R  ++     + G+H + AAL +      
Sbjct: 7   ELITSDKNTTV----------KLVKALLTQARQRNKHGQTVIEGIHLIDAALRSDY-PFV 55

Query: 70  QLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPT 125
           Q+L  ++A    +       LP   P+ T+     + I        G+  +    + +P+
Sbjct: 56  QILLAESAHHHPEVQQVLTRLPTYTPILTLSDALYESIRSLGT---GIDIMAVIKMPTPS 112

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L  + +    ++L+ V D  N+G +LR+A A     I+ T   + + S    ++  GA  
Sbjct: 113 LSMIHDD--CLILNDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQF 170

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +      ++ + L  + +        SS +   + Q      IA I+G EG+G+  +  
Sbjct: 171 ALNIYEGLSVQEVLDHVQT---PLFATSSHTDTVIYQHDLKKPIAWIMGHEGQGVCNELM 227

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + AT +A L  P   ++LNV+ A ++ LY T    +
Sbjct: 228 QCATPIA-LPQPNGQESLNVAIAGSLCLYETLRQRS 262


>gi|293393635|ref|ZP_06637945.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
 gi|291423970|gb|EFE97189.1| tRNA guanosine-2'-O-methyltransferase [Serratia odorifera DSM 4582]
          Length = 220

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V+ PHN+ AI+R+A A     +     +  +    L  SA+G+   +
Sbjct: 3   ATRQPDLTVCLEQVHKPHNVSAIIRTADAVGVHQVHAV--WPTTRMRTLVSSAAGSNSWV 60

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + +A+  + S G Q +  +  ++              ++LG E  G+  +  +
Sbjct: 61  NVKTHRTIGEAVGHLKSQGMQILATNLSARAVDFRDIDYTRPTCILLGQEKSGISEEALQ 120

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 121 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|242241345|ref|YP_002989526.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
 gi|242133402|gb|ACS87704.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech703]
          Length = 230

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +     +  +    L  +A+G+   +  
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTNRMKTLVSTAAGSNSWVQV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++ DA+  + S G Q +  +  +               ++LG E  G+  +    A
Sbjct: 74  KTHRSIHDAVSHLKSQGMQVLATNLSASAVDFRDVDYTRPTCILLGQEKTGISAEALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|283850256|ref|ZP_06367545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
 gi|283574282|gb|EFC22253.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. FW1012B]
          Length = 196

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 6/156 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIP 188
           R + L +V+++++DPHN+ AILRS  AF    +     Y+ +    L K +SG A + + 
Sbjct: 20  RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLL--YTDTAFPALGKKSSGSAKKWVE 77

Query: 189 YIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            IR  +       +   G+  +    S++ +PL+      K+A+ILG E +G+       
Sbjct: 78  TIRHPDAASLAASLKGQGYTLVATLCSETARPLQDWDLTGKVAIILGNEHRGVDEDLAPH 137

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
                ++ M G++++LNVS AAAV LY    Q H A
Sbjct: 138 VDGALYIPMQGMVQSLNVSVAAAVILYEGFRQRHAA 173


>gi|300898586|ref|ZP_07116916.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|300983468|ref|ZP_07176615.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300306932|gb|EFJ61452.1| RNA methyltransferase, TrmH family [Escherichia coli MS 200-1]
 gi|300357749|gb|EFJ73619.1| RNA methyltransferase, TrmH family [Escherichia coli MS 198-1]
 gi|324012714|gb|EGB81933.1| RNA methyltransferase, TrmH family [Escherichia coli MS 60-1]
          Length = 218

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 60  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|260949181|ref|XP_002618887.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
 gi|238846459|gb|EEQ35923.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
          Length = 405

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 118/335 (35%), Gaps = 69/335 (20%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           KK  +K+   K    AK +    D     S   K + T  P   ++YG H V AAL    
Sbjct: 66  KKLDDKVKRQKSLREAKKKHLMGDDYYQSSKPAKPKMTLNPLCEYVYGTHPVIAALTAKK 125

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLS 123
           R  F  L   N          L   F VK +   T  ++  +    VH G+ LET PL  
Sbjct: 126 RDAFSKLFIHNTKEHTPKILKLAKNFGVKIIEKDTKGEMNVLSSNGVHNGVVLETKPLSF 185

Query: 124 PTLDAVRNS--------------------------------------QLLMVLDHVNDPH 145
           P +  + N                                          ++LD + DP 
Sbjct: 186 PLISTLENDFDGETGEYSVTLMNELTGDEKSFQHTVARHTPHNYKRFPFGLLLDGITDPQ 245

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+I+R+A     D I+  +  S       AK+++GAL+ +   +  +    L  +   
Sbjct: 246 NVGSIIRTAYYLGVDFIVIPESESARLGPATAKASAGALDLLTIYKTDDTLTFLDNVRKS 305

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIAL---------------------ILGAEGKGLRPK 243
           G+  +  SS  S+  L       + AL                     + G+EG G+R  
Sbjct: 306 GWNVVTTSSRMSEDELNSMKSKHRPALENKYIEPQELPALMNQTPMLMVFGSEGAGVRTN 365

Query: 244 TQETATSMAHLHMPGI------IKALNVSNAAAVA 272
            +  +  +  L   G       + +LNV  AA++ 
Sbjct: 366 IKFRSDYLVGLP-KGRLETDEVVDSLNVGVAASLL 399


>gi|237728947|ref|ZP_04559428.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
 gi|226909569|gb|EEH95487.1| tRNA guanosine-2'-O-methyltransferase [Citrobacter sp. 30_2]
          Length = 229

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A SA+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  + S G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHLTIGDAVTHLKSRGMQVLATHLSDKAVDFREIDYMRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADQDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|262392639|ref|YP_003284493.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
 gi|262336233|gb|ACY50028.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio sp. Ex25]
          Length = 227

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P +   L+ +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKV---HAIWPDKMRTLSHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKVGASDQAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|295839840|ref|ZP_06826773.1| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
 gi|295827675|gb|EDY45612.2| 23S rRNA methyltransferase [Streptomyces sp. SPB74]
          Length = 270

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 107/275 (38%), Gaps = 23/275 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           ++ SL+       RR  +     +SF  K R           G   V  A    +  + +
Sbjct: 5   ELTSLRSPRVVAARRLAK-----RSFRGKERR------FLAEGPQAVREA----AEHLVE 49

Query: 71  LLATKNALARL--DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           + AT+ A  R     D       PV     + +  +       QG+      L +   D 
Sbjct: 50  VYATEEAARRHPGLLDDARARGVPVLGASEEVLAAMADT-VTPQGVIGLCRFLDTGFADV 108

Query: 129 VR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           +    +L+ VL HV DP N G +LR A A   D ++ T       +    +++ G+L H+
Sbjct: 109 LAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDVYNPKCVRASVGSLFHL 168

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKP----LEQEIKNDKIALILGAEGKGLRPK 243
           P      + +A+  +   G + +             L++       A + G E  GL  +
Sbjct: 169 PVATGVPIEEAVAGLRGIGVRVLAADGAGADDLDDELDRGTMGGPTAWVFGNEAWGLPEE 228

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           T+  A ++  + + G  ++LN++ AAAV LY +  
Sbjct: 229 TRALADAVVRVPLHGKAESLNLATAAAVCLYASAR 263


>gi|82779142|ref|YP_405491.1| tRNA guanosine-2'-O-methyltransferase [Shigella dysenteriae Sd197]
 gi|309784368|ref|ZP_07679007.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
 gi|81243290|gb|ABB64000.1| putative RNA methylase [Shigella dysenteriae Sd197]
 gi|308927875|gb|EFP73343.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           1617]
          Length = 229

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITEEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q+  
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQHQR 165


>gi|260902542|ref|ZP_05910937.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
 gi|308109724|gb|EFO47264.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ4037]
          Length = 227

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ AI+R+A A     +       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAIIRTADATGLHKV---HAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  ETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|56480145|ref|NP_708432.2| putative methyltransferase [Shigella flexneri 2a str. 301]
 gi|56383696|gb|AAN44139.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 345

 Score =  165 bits (418), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 161 ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCA 219

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+
Sbjct: 220 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGHNIVNVLHDFRQAGYSVVNTSSE 278

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
              PL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  
Sbjct: 279 QGTPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338

Query: 274 YITQN 278
           +  QN
Sbjct: 339 WWRQN 343


>gi|127514429|ref|YP_001095626.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
 gi|126639724|gb|ABO25367.1| tRNA guanosine-2'-O-methyltransferase [Shewanella loihica PV-4]
          Length = 234

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 3/154 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + LD V+  +NI A++R+A A     I     +   E  V   +ASG+ + +  
Sbjct: 16  RQTDLTVCLDKVHKTNNIAAVIRTADAVGIHQIHAV--WPDIEMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+  ++ +A  +  + G Q +  + S++              +I+G E  G+  +    A
Sbjct: 74  IKHYHMDEAAAQFKAAGMQILATNFSENAVDFRDIDYTKPTVVIMGNERDGVSEEGLAIA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                + M G++++LNVS A+A+ +Y  Q   A+
Sbjct: 134 DQQIIIPMIGMVQSLNVSVASALVMYEAQRQRAE 167


>gi|163856832|ref|YP_001631130.1| putative RNA methyltransferase [Bordetella petrii DSM 12804]
 gi|163260560|emb|CAP42862.1| putative RNA methyltransferase [Bordetella petrii]
          Length = 258

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 97/259 (37%), Gaps = 7/259 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  +K++Q   Q +    +P    L GVH   A L       + +            
Sbjct: 6   SRDNPQFKQLQRLAQHAGRRGEPA--ILEGVHLCQAWLAEAGPPAWAVFDAGRVQQPELA 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                 P     +    + + +      QG+     P  +P L A  +  + + LD V D
Sbjct: 64  ALLAAVPPRQALLLESRLLRHLETVETGQGVLFVVDP-PTPALPARLDEPM-VWLDRVQD 121

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR   A     ++ +   + + S  + +   GA   +     ++L    Q++ 
Sbjct: 122 PGNVGTILRVCAAAGIGRVLLSPGCAAAWSPKVLRGGQGAHFALALHEHADLQACAQRLE 181

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                    + +  + L         A + G EG+G+ P  Q+ A     +     +++L
Sbjct: 182 ---IPLAATTLEGAQDLYATRLPPACAWVFGHEGQGVAPALQQAAALRVRIDHAPAVESL 238

Query: 264 NVSNAAAVALYITQNHFAK 282
           NV+ AAA+ L+  +    +
Sbjct: 239 NVAVAAALCLFEQRRQMQQ 257


>gi|297184491|gb|ADI20605.1| rRNA methylases [uncultured gamma proteobacterium EBAC_27G05]
          Length = 240

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 10/232 (4%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTI----DKIVGK 107
           G HT+   L      I Q+    N   AR+    +L     V     + +    +  + K
Sbjct: 12  GFHTIEMLLKLSPENIKQIFIPANRNDARIQNLISLAEAASVSVEKKKNLSQHPEATLKK 71

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           E V      + + L        R++   +V+D+V DP N+GA +RSA A +  G+I  K 
Sbjct: 72  EEV-----FDLSDLKKYEETIQRDNPTFLVIDNVIDPRNLGACIRSAAASNVAGVIINKH 126

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
           +    + ++ + ++G  E +    ++NL +A++     G+  +G S  +K    +   N 
Sbjct: 127 HCSPITPLVRQVSAGGTEAMKIFIVTNLINAIKHFEKLGYLILGTSEHAKSMHTELDLNK 186

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            I  I+G+E +G+R KT E  +++  L     + +LNVS AA V L+     
Sbjct: 187 PILTIIGSEEEGMREKTLEKCSTVCTLSKNETLNSLNVSVAAGVILFEIARQ 238


>gi|283787717|ref|YP_003367582.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282951171|emb|CBG90863.1| tRNA (guanosine-2'-O)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 229

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD+     +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVSHLKGRGMQVLATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|308189702|ref|YP_003922633.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|319776886|ref|YP_004136537.1| rRNA methylase [Mycoplasma fermentans M64]
 gi|307624444|gb|ADN68749.1| tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|318037961|gb|ADV34160.1| rRNA methylase [Mycoplasma fermentans M64]
          Length = 237

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 104/250 (41%), Gaps = 30/250 (12%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++   + ++     +   + G H V  AL             KN +  +  + 
Sbjct: 10  SNPKIKYLKEVQKDNK----SDYFLVSGYHLVQEALA------------KNLVIEIFEEE 53

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +         V    +  I         +AL   P        ++N   +++LD+V DP 
Sbjct: 54  SKSTYKTATLVKSNVLKSISSTMHPDGVVALCLKPKSQ-----IKNK--VILLDNVQDPG 106

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+A  F  D +I+        +  + ++  GAL  +  I+ +N  D ++ +++ 
Sbjct: 107 NVGTIIRNAACFGFDTVIS---NVNFYNDKVVRATQGALFQVSLIKENNNEDLIKVLNNE 163

Query: 206 GFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G+  +  S D       E+K   +K+ LILG EG G+     +      ++ +    ++L
Sbjct: 164 GYFIVATSLDKDSIKLDELKINKEKVVLILGNEGNGINKNLYKYCDQKVYIPI--EFESL 221

Query: 264 NVSNAAAVAL 273
           NV+ A+ + L
Sbjct: 222 NVAVASGIIL 231


>gi|317494702|ref|ZP_07953114.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917304|gb|EFV38651.1| SpoU rRNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 230

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       P ++   +  +A+G+   
Sbjct: 14  ATRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQV---HAVWPGKTMRTMVSTAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      +++ A+  + + G Q +  +  S      +        +++G E  G+  +  
Sbjct: 71  VSVKTHPDISSAVSTLKAEGMQILATNLSSTAVDFREIDYTRPTCILMGQEKYGITAEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|320531672|ref|ZP_08032612.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320136092|gb|EFW28100.1| RNA 2'-O ribose methyltransferase substrate binding [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 304

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 15/240 (6%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHP 90
           +   N +++H        + G   V  A+ +   ++  +  T+ AL R    WD  +   
Sbjct: 55  LSRRNARAKHRR----FLVEGPQGVREAVRHAPGRVLDVYLTEAALERHGEIWDEAVAVG 110

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHN 146
             V     Q +D +       QGL    A            A+  ++L+ VL    DP N
Sbjct: 111 LYVHVTTQQVMDAMSPDA---QGLLAVVATEEVTGSEALTTALEGARLVAVLAQAQDPGN 167

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G I+R+A A   D ++  +      +  + +S +G+L H+P +    L DA+  +HS G
Sbjct: 168 AGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVTALHSAG 227

Query: 207 FQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +         L +   +     A +LG E  GL  +    A ++  + + G  ++LN
Sbjct: 228 LTVLAADGRGDLDLFEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYGKAESLN 287


>gi|239995992|ref|ZP_04716516.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 235

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 8/154 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK--SASGALEHI 187
           R + L + L++V+ PHN+ A++R+  A     +     ++  E     +  +A G+ + +
Sbjct: 16  RQTDLTVCLENVHKPHNVSAVVRTCDAVGIHRV-----HTVWEKKYQFRRGTAMGSQQWV 70

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 N+ DA+ ++   G Q +    SD+             A++ G E  G   + + 
Sbjct: 71  RQTNHDNINDAMAELKGQGMQVLVTHLSDTAVDFRDIDYTKPTAILFGQEKYGASDEAKA 130

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS AAA+ LY  Q   
Sbjct: 131 IADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQR 164


>gi|152972505|ref|YP_001337651.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238897101|ref|YP_002921847.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262045611|ref|ZP_06018630.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996955|ref|ZP_08302652.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
 gi|150957354|gb|ABR79384.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549429|dbj|BAH65780.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259037037|gb|EEW38289.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539245|gb|EGF65274.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
          Length = 229

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       PS     +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEV---HAVWPSSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|254431824|ref|ZP_05045527.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
 gi|197626277|gb|EDY38836.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
          Length = 285

 Score =  165 bits (418), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 95/258 (36%), Gaps = 16/258 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++  +  ++   +   + L G H +  AL         L            
Sbjct: 11  SRRNPLVKRLRQLHT-AKGRREQGLVLLEGTHLLQEALRLGLEPAHLLATGMWQRNHAPT 69

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     + TV  + +  +   +     +A    P   P       ++L++ LD V D
Sbjct: 70  LGAIRAGVAITTVTEEVLAAVATTDHPDGVVAALPTP---PAGWGPATARLVLALDGVQD 126

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQK 201
           P N+G ++R+A+A   + +   +  +        ++++GA   +P  R     L   L +
Sbjct: 127 PGNLGTLMRTALAAGVEALWLAEG-ADPLQPKALRASAGAALALPLQRGSRETLLHQLGE 185

Query: 202 MHSW-------GFQTIGLSS--DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           + +          Q +          P  Q        L+LG EG GL  +  + AT   
Sbjct: 186 LAARTAETGSEALQVVATVPPQAGAIPYWQLDWQRPTVLLLGQEGAGLSGQLLQRATHRV 245

Query: 253 HLHMPGIIKALNVSNAAA 270
            +     +++LNV+ AAA
Sbjct: 246 TIPHSAAVESLNVAVAAA 263


>gi|225469664|ref|XP_002266337.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 459

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 110/290 (37%), Gaps = 32/290 (11%)

Query: 18  SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN----NPSRKIF--Q 70
           SH   +   ++   K        S +     +  + G   +            R +    
Sbjct: 170 SHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEMDC 229

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-- 128
           LL    A      D        V ++  + +  +   E+V + +AL   P    +++   
Sbjct: 230 LLILDKAEIPEGLDVFSVRLVRVSSMVMKKLSGLQSTESV-EAIALMRIPTSFFSVNDDT 288

Query: 129 --------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                    ++   ++VLD + DP N+G +LRSA+AF   G+          +    +++
Sbjct: 289 YEKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRAS 348

Query: 181 SGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKKP----------LEQEIKNDKI 229
            GA   +P +  S +   L+ +   +  + I    DS +           L   + +  +
Sbjct: 349 RGASFQLPIVSGSWIH--LETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPL 406

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG+EG GL  K+ +    +  + M G  ++LNVS A  + LY+ Q  
Sbjct: 407 CLVLGSEGSGLSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 455


>gi|150397809|ref|YP_001328276.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150029324|gb|ABR61441.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 275

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 12/250 (4%)

Query: 39  KSRHTSQPENLFL-YGVHTVS--AALNNPSRKIF---QLLATKNALARLDWDANLPHPFP 92
           K R  +  +  F+  G   +   AA ++  R I     LL         +  A  P   P
Sbjct: 23  KERDLTGRQGRFIAEGTVVLRMLAAAHSARRGIAAEAILLLESRVFGLAELLAQFPPDVP 82

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           +        D I G   +H+G+      + AP     +  +  S L++    +++  N+G
Sbjct: 83  LYVATSAVFDAIAGFN-MHRGVLALGRRDAAPEQEALIAGLPQSSLVLAACGISNHDNMG 141

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           ++ R+A AF  D ++              + + G++  +P+ R     + + ++ +  F 
Sbjct: 142 SLFRNAAAFGADAVLMDMASCDPMYRKAIRVSVGSVLTLPFAREGGAAELIGRLQAADFV 201

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             GLS      +       + AL++G EG+GL           A +     + +LNV+ A
Sbjct: 202 VWGLSPRGAVDITAIPPAPRTALLVGTEGEGLPEAILSQ-IHTARIRQRPGLDSLNVAMA 260

Query: 269 AAVALYITQN 278
           A +AL+   N
Sbjct: 261 AGIALHQVAN 270


>gi|254707158|ref|ZP_05168986.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|254709299|ref|ZP_05171110.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|256030822|ref|ZP_05444436.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|261314635|ref|ZP_05953832.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261316808|ref|ZP_05956005.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|265987878|ref|ZP_06100435.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|261296031|gb|EEX99527.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261303661|gb|EEY07158.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|264660075|gb|EEZ30336.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
          Length = 176

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 4/168 (2%)

Query: 114 LALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           +           L  ++   + + + LD V DP N+G ++R+A A    G+I     +  
Sbjct: 1   MVAGVFEQQYHQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDP 60

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIA 230
            S    ++  G++  +P  R S   D L     +    +G               N  + 
Sbjct: 61  YSLETVRATMGSVFSVPLYRASE-ADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVI 119

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           LI+G E +GL          +A +   G   +LN++ A  V LY  + 
Sbjct: 120 LIMGNEQQGLPDSLAGACDKLARIPQAGRADSLNLAIATGVMLYEIRR 167


>gi|320539303|ref|ZP_08038973.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
 gi|320030695|gb|EFW12704.1| putative tRNA mG18-2'-O-methyltransferase, SAM-dependen [Serratia
           symbiotica str. Tucson]
          Length = 231

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + L+ V  PHN+ AI+R+A A     +     +  +    L  SA+G+   +
Sbjct: 14  ATRQPDLTVCLEQVLKPHNVSAIIRTADAVGVHQVHAV--WPTTRMRTLVSSAAGSNNWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  ++D +  + + G Q +     S+     +        ++LG E  G+  +   
Sbjct: 72  NVKTHHTISDTVNHLKTQGMQVLATHLSSRAVDFREVDYTRPTCVLLGQEKTGMTDEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|116072278|ref|ZP_01469545.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
 gi|116064800|gb|EAU70559.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. BL107]
          Length = 229

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---AVLAKSASGALEH 186
           R + L ++L+HV  PHN+ AILRS  A         + ++ S S        +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILRSCDAVGA-----LEAHAVSFSGRPRTYNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P     ++  A++ + + GF+  G     + +           A +LGAE  GL  + +
Sbjct: 73  VPLNDHPDIETAIKVLKAKGFRLYGTHLGTNARDYRDCDFTGPTAFVLGAEKWGLSDQAR 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
           +       + M G++++LNVS A A  L+    Q   A
Sbjct: 133 DLMDEALFIPMRGMVQSLNVSVATATLLFESLRQRQAA 170


>gi|86739559|ref|YP_479959.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
 gi|86566421|gb|ABD10230.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
          Length = 316

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 101/278 (36%), Gaps = 31/278 (11%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R           G   ++ AL    R    +L +   LA +  D  + 
Sbjct: 43  DYISLTDVALRRRREPADGLFIAEGERVITRALRAGYRP-RSVLVSPARLAAVPADLGV- 100

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
              PV    P  +  I G E VH+G LA           D + +++ ++V + +    N+
Sbjct: 101 -DVPVYVAGPDVLAAITGFE-VHRGALAAMGRQPPRAAADLLVDARRVLVCEDIVSHTNL 158

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAI RSA     D ++ + R +        + + G +  +PY R+    +AL  +   GF
Sbjct: 159 GAIFRSAAGLGMDAVLLSPRCADPLYRRSVRVSMGEVFAVPYARLEPWPEALGLLRDAGF 218

Query: 208 QTIGLSSDSKKPLEQEIKNDKIA--------------------------LILGAEGKGLR 241
             + L+  +                                        L+LG EG GL 
Sbjct: 219 TLLALTPAADAEDLGSFAAGLTPRAAPALAPAPAPAPAPAPVPAAARVALLLGTEGAGLS 278

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              Q  AT+   + M   + +LNV+  AA+A Y+    
Sbjct: 279 AAAQAAATARVRIPMAHGVDSLNVAATAAIACYLLGRR 316


>gi|294673532|ref|YP_003574148.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294471919|gb|ADE81308.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 246

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 93/243 (38%), Gaps = 16/243 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            +   Q       G   V   L        QL AT       +W A  P    ++ V   
Sbjct: 16  KKFRKQEGLFIAEGHKVVGDLLKAGYTP-KQLFAT------AEWIAANPVAGAIE-VTND 67

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + K+  ++   Q LAL   P+ +P        QL ++LD+V DP N+G I+R A  F  
Sbjct: 68  ELTKLSLQQHPQQVLALF--PIPTPQHQTPSTQQLSILLDNVQDPGNLGTIIRIADWFGI 125

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D I  ++    + +  + ++  G++  +  I I  +   L  +    F   G   D +  
Sbjct: 126 DTIFCSEGTVDAWNPKVVQATMGSIARVHLIYIDTM-QLLDSLPK-DFPVYGTFLDGENI 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYIT 276
             QE+    + +++G EG G+    +   T    +          +LNV+ A A+     
Sbjct: 184 YTQELSQQGL-IVMGNEGNGISDAVRARVTHKLLIPDFHKGPTADSLNVAIATAITCSEF 242

Query: 277 QNH 279
           +  
Sbjct: 243 RRR 245


>gi|284029149|ref|YP_003379080.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283808442|gb|ADB30281.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 270

 Score =  164 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 53/239 (22%), Positives = 107/239 (44%), Gaps = 12/239 (5%)

Query: 34  QSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPH--P 90
           QS   ++  + + + + +YG   V  ALN+P+  + +++   NA    LD          
Sbjct: 20  QSGADRAELSPRDKWITIYGRKPVLEALNDPALSVAKVVVADNAGGGSLDEILAAARRLG 79

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPTLDAVRNSQL----LMVLDHVNDPH 145
            PV+      +  + G     QG+  +  AP ++P  + +R        + +LD V +P 
Sbjct: 80  TPVERASSTRVKWLAGNGKQDQGVVADVDAPRMTPLPNFLRQRGRRPTKVFLLDGVTNPG 139

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILR+A     DG+I  +  +P    ++ K+++G     P +       A+  + + 
Sbjct: 140 NVGMILRTATGAGFDGVILPRAGTPHVGPLVIKASAGVAFQAPIVNAPTAKGAVDALRAA 199

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G++  GLS+ S++ L +     +   +LG E  G+   T     +   + +   +++LN
Sbjct: 200 GYEIYGLSARSQRSLFRTELAPRAVFVLGGETHGISVTT----DTDLRIPLHNGVESLN 254


>gi|300714631|ref|YP_003739434.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299060467|emb|CAX57574.1| Putative tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 232

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       P S    +  SA+G+   
Sbjct: 14  AARQHDLTVCMEQVHKPHNVAAVIRTADAVGVHEV---HAVWPGSRMRTMVSSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +     SN+ DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHSNIADAVGHLKGQGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQQAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|294811657|ref|ZP_06770300.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326440159|ref|ZP_08214893.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294324256|gb|EFG05899.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 278

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 98/258 (37%), Gaps = 15/258 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR---KIFQLLATKNALARLDWDANL 87
           +++   N + +           G   V  A  + S     + +L AT  A  R       
Sbjct: 18  RRLAKRNFRGKDR----LFLAEGPQAVREAAGHRSGGEPTLTELFATVEAAERYADIVGA 73

Query: 88  PHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDP 144
                          I  I       QGL      L SP    VR+   L+ VL +V DP
Sbjct: 74  ARAAGARVHLAGEDVITDI-STTVTPQGLVGVCRFLDSPFDAVVRSRPTLVAVLANVRDP 132

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G +LR A A   D ++ T       +    +++ G+  H+P      +  A+Q +  
Sbjct: 133 GNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVGSHFHLPVAVGVPVERAVQGLRE 192

Query: 205 WGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            G + +      +  L+ E+         A I G E  GL  +T+  A ++  + + G  
Sbjct: 193 AGVRILAADGAGEHDLDAELDAGTMGGPTAWIFGNEAWGLPEETRALADAVVRVPIHGRA 252

Query: 261 KALNVSNAAAVALYITQN 278
           ++LN++ AAAV LY +  
Sbjct: 253 ESLNLATAAAVCLYASAR 270


>gi|205354655|ref|YP_002228456.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274436|emb|CAR39468.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326629793|gb|EGE36136.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 229

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ AI+R+A A     +      S      +A +A+G+   +
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAIWPSS--RMRTMASAAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+  +   G Q +    SD      +        +++G E  G+  +  +
Sbjct: 72  QVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|46137319|ref|XP_390351.1| hypothetical protein FG10175.1 [Gibberella zeae PH-1]
          Length = 695

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 102/293 (34%), Gaps = 68/293 (23%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVP---PQT 100
           FLYG   V AAL    RK++ L          N    +       H  P+ TVP    + 
Sbjct: 312 FLYGRSVVKAALEQNRRKLYNLYIYGGENRMDNKDNTIMTRMAEKHGVPITTVPTHEQRI 371

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRN----------------------------- 131
           +DK+      H G  LE +PL    + ++                               
Sbjct: 372 MDKM-SMGRPHNGFVLEASPLPQLPIKSLGKLEESPGRLGFHVDLDYQTREEAAVNGTDT 430

Query: 132 ----------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                        +++L+ + DP N+G I+R+A     D +  T R S + + V+ KSA 
Sbjct: 431 FTRRSNDVTPKPFVLLLNEIMDPGNLGGIIRTASYLGVDAVCITNRGSSTLTPVVLKSAV 490

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGL-----------SSDSKKPLEQEIKND--- 227
           GA+E I    + +    +++    G++T                D    L+         
Sbjct: 491 GAVEEISLFTVDDPVKFVEESGKAGWKTYAAVAPPDRKLVRRHGDKFISLDSIESTSPLN 550

Query: 228 --KIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALYI 275
                L+LG EG GL    +  +     +        + +LNVS AA +  + 
Sbjct: 551 DHPCLLVLGNEGHGLSKPVKVASDYELSVPRFVQGSCVDSLNVSVAAGLLCHA 603


>gi|255660253|ref|ZP_05405662.1| RNA methyltransferase [Mycoplasma genitalium G37]
          Length = 201

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 107 KEAVHQGLAL--ETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           ++  HQ L    +T  LL P LD +      +    L++LD + DP+N GAILR+ +A  
Sbjct: 21  RDINHQELVAVLDTNQLLIP-LDQLVKVVENKKCSTLVMLDEIQDPYNFGAILRTCLASE 79

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-- 216
            DGII  K      +  + K++ G++ +   ++++NL+  + K+   GF T+  + D   
Sbjct: 80  VDGIIFKKNNQVPINNTVMKTSMGSVFYQNLVQVANLSYTITKLKEIGFWTVVSTLDPIW 139

Query: 217 -KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +     KI LI+G E +G+     + A     + M   I +LNVS A  + L+ 
Sbjct: 140 KPIDYRKVDFAKKI-LIVGNEDRGVNQLITKNADCRIKIPMNNKINSLNVSVALGIILFA 198

Query: 276 TQN 278
            +N
Sbjct: 199 WKN 201


>gi|254670213|emb|CBA05373.1| putative RNA methyltransferase [Neisseria meningitidis alpha153]
 gi|325130237|gb|EGC53007.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           OX99.30304]
          Length = 261

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/259 (21%), Positives = 96/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +    +   +    A    +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGMPVGVYI--PEAKMPSEEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P   V +V    + KI         LAL    +  P   A+      +VLD V 
Sbjct: 66  KLTAVLPEDGVFSVSDGILKKISSLTCADDVLAL----IDIPDAGALPAGGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  K  + + S  + ++  GA         ++L   L + 
Sbjct: 122 DPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADLEIWLARY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 EDRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|325104097|ref|YP_004273751.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
 gi|324972945|gb|ADY51929.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
          Length = 248

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 10/241 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q+ +   +     + G+ +++  L +   ++  +      +  L     L     V  + 
Sbjct: 14  QQKKFRKEHNLFIVEGLKSITEFLASKY-QVQTIYCLSKDIPNLP---KLSQKQKVFEIT 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            Q + KI   +   + LAL   P L   +  +   ++ +VLD V DP N+G I+R+A  F
Sbjct: 70  EQELTKISSLQNPQEALALIEIPQLDVNVLEI-EKEINLVLDGVQDPGNLGTIIRTADWF 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               II +K      +  + ++  G+L  +    +    D    + +      G   D K
Sbjct: 129 GFSNIICSKNTVDVYNPKVVQATMGSLARVNVSYV----DLPAYLIAQQLPKFGTLLDGK 184

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               Q+       LILG+EG G+  +          +   G  ++LNV  AAA+     +
Sbjct: 185 NIYHQDWPEAGF-LILGSEGNGISDEIISLLDGSVTIPKLGQTESLNVGIAAAICCSEIK 243

Query: 278 N 278
            
Sbjct: 244 R 244


>gi|213609646|ref|ZP_03369472.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 184

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|304399040|ref|ZP_07380909.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
 gi|304353500|gb|EFM17878.1| tRNA guanosine-2'-O-methyltransferase [Pantoea sp. aB]
          Length = 221

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEH 186
           A+R   L + ++ V+ PHN+ A++R+A A     +       PS+     A +++G+   
Sbjct: 3   ALRQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV---HAVWPSQRMRTQASASAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  +    + DA++++     Q +     +      +        +++G E  G+  +  
Sbjct: 60  VKVVTHPTIGDAVKQLKQQKMQVLATHLSADAVDFREIDYTLPTCILMGQEKTGITEEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A A+ LY  Q   
Sbjct: 120 ALADRQIVIPMVGMVQSLNVSVACALILYEAQRQR 154


>gi|227113296|ref|ZP_03826952.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 230

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHN+ A++R+A A     +      S      L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEVHAIWPTS--RMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                N+ DA+  + + G Q +    S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRNIGDAVGHLKAEGMQVLATHLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|326800581|ref|YP_004318400.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
 gi|326551345|gb|ADZ79730.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
          Length = 252

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 91/241 (37%), Gaps = 11/241 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           + +   +     + G  +++   ++    I  +  T     ++D        +P+     
Sbjct: 15  QKKFRKEHGLFIVEGFKSITDFFHSDY-VIHSIYYTPKVGPKIDIFGEKIKHYPI---SE 70

Query: 99  QTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + ++ I       QG+      P      +     Q  +VLD + DP N+G I+R+A  F
Sbjct: 71  RDLEAI-STLKTPQGIVALIETPSEVAVQEDELRDQFSLVLDTIQDPGNLGTIIRTADWF 129

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               II ++      +  + ++  G+L H+        TD    + +    +     D +
Sbjct: 130 GIKHIICSEETVECFNPKVVQATMGSLAHVSIHY----TDLHAFLKNVTLPSFATVLDGQ 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              E +  ++   +ILG EG G+ P      T    +   G  ++LNV+ +AA+      
Sbjct: 186 SIYETDFGSEGF-IILGNEGNGIAPDLISNKTQRITIPSFGNAESLNVAVSAAICCSEIS 244

Query: 278 N 278
            
Sbjct: 245 R 245


>gi|237711324|ref|ZP_04541805.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229454019|gb|EEO59740.1| tRNA/rRNA methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 178

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   T+D  + +    L +VLD V   HNIG++ R++ AF  D I      +   
Sbjct: 4   LKITELNRLTVDEFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKI 229
              + K+A GA   + +    N  DA+Q++H  GF  + +   +    L+  +   + K 
Sbjct: 64  HPEMHKTALGAENSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A+++G E KG++ +          +   G   +LNVS    + ++   N   K
Sbjct: 124 AIVMGNEVKGVQQEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176


>gi|169824566|ref|YP_001692177.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|167831371|dbj|BAG08287.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
          Length = 256

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 116/266 (43%), Gaps = 20/266 (7%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I  LK +       +++ YK ++S  +K ++  +     + G      A+ +    I Q+
Sbjct: 5   IRLLKQAIKMITSTSNKIYKHVKSLYKK-KYRQKYNEFVIEGYKLYQEAIKSNLN-IKQV 62

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           +  +          N      V     +T + +       +G+    + +    +     
Sbjct: 63  IIREG--------ENFLDEC-VYF-DSKTFNSLSEMN-NPEGIICVVSFIEQKDV----K 107

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S  ++ L+++NDP N+G I+RSA AF  + I+ +       ++   +SA G+L  +    
Sbjct: 108 SDQILFLENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMNISY 167

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             N+ + L+K  S GF+    S + + + + +    +K  LI+G E  G+  + ++ A  
Sbjct: 168 -ENI-NVLEKYKSKGFKIYETSLEKNSRSILEIKNKEKHVLIIGNEANGISDEIKKYADE 225

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
              + M  + ++LN S AA+++++  
Sbjct: 226 FLIIPMDNVTESLNASIAASLSMFYL 251


>gi|332304823|ref|YP_004432674.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172152|gb|AEE21406.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 250

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 4/156 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L + R   L + L+ V+ PHN+ AILRS  A   + I         ++ +   +A G+  
Sbjct: 12  LLSTRQPSLTVCLEQVHKPHNVSAILRSCDAVGINRI---HGVWDQKTKLRKGTAMGSEH 68

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +     S++ DA+  +     Q +    SD      +       A+ILG E  G   + 
Sbjct: 69  WVKTEMHSSIDDAVGVLKQQNMQVLVTHLSDDSVDFREIDYTQPTAIILGQERHGATEEA 128

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              A     + M G++++LNVS AAA+ LY  Q   
Sbjct: 129 IALADKNIVIPMVGMVQSLNVSVAAALVLYEAQRQR 164


>gi|197266019|ref|ZP_03166093.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197244274|gb|EDY26894.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 229

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|300932625|ref|ZP_07147881.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 304

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 113/284 (39%), Gaps = 36/284 (12%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRKIF----QLLATKNALARLD 82
           D + + S + +         +   G   V   L +  P R I     +L A    L    
Sbjct: 21  DVRDLNSSDSRPDLPGGKGLVIAEGTLVVPRLLASRYPVRSIVGFRPKLDALAEQLQAEG 80

Query: 83  WDANLPHPFP------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129
           +  +  H  P      V  V  + + ++ G + +H+GL      +    ++ V       
Sbjct: 81  FFTSDAHRPPEYQPPQVFEVSREVLREVAGFD-MHRGLVAAANRVAERGVEEVLDLVEAT 139

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
              ++++ VL+ V D  NIGA+ R+A     D ++     +        + + G +   P
Sbjct: 140 NDGAKVVAVLEGVGDHENIGAMFRNAAGLGVDAVLFGAATADPLYRRSVRVSMGHVLRTP 199

Query: 189 YIR----ISNLTDALQKMHSWGFQTIGLSSDSKKPL-----------EQEIKNDKIALIL 233
           + R     +    +L+++   G+  I L+ ++++ L           E E +  +IA+++
Sbjct: 200 FARLEGKTTTWQRSLEQLRRRGYTVIALTPNTEETLMSAVALAQRRAEAEQRESRIAIMV 259

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GAEG GL       A   A + M     +LNV+ AAA+  Y  +
Sbjct: 260 GAEGPGLTEHAMRAADIRAAIPMASGTDSLNVATAAAIGFYAAR 303


>gi|161616825|ref|YP_001590790.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168464947|ref|ZP_02698839.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|161366189|gb|ABX69957.1| hypothetical protein SPAB_04644 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195632097|gb|EDX50581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 229

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|90416529|ref|ZP_01224460.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
 gi|90331728|gb|EAS46956.1| putative rRNA methylase [marine gamma proteobacterium HTCC2207]
          Length = 258

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 10/245 (4%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQL-LATKNA---LARLDWDANLPHPFPVKT 95
           +R ++    + +YG   V   L + S +IF+L LA  N    +              +  
Sbjct: 11  ARKSAYDRLITVYGRKPVYEILADRSLEIFRLHLADSNRGGGIVEQIKSLAAQRNIEICY 70

Query: 96  VPPQTIDKIVGKEAVHQGLALET----APLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGA 149
              + + +I       QG+A +            L+ + ++    L+ LD + +P N+G 
Sbjct: 71  HSREQLARISRNSKQDQGVACDIHSAGYQPYKKALEKLPSADQRPLIALDGITNPQNLGM 130

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+RS  A    G++   +     SA++ K+++G +     +R  +L  AL      GF+ 
Sbjct: 131 IIRSITASPAYGLLLPSKGCADISALVIKASAGTVFKGNILRCESLAKALPAFIEKGFEV 190

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             LSS    PL +      I  +LG E +G+  +    +     + M   +++LNV+  A
Sbjct: 191 CTLSSHQATPLAEFKPQAPIIYVLGNETEGVSKEIAALSKHRVGIPMANGVESLNVAITA 250

Query: 270 AVALY 274
           A+  +
Sbjct: 251 ALIAF 255


>gi|302380365|ref|ZP_07268835.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311855|gb|EFK93866.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 243

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 112/252 (44%), Gaps = 20/252 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++ YK ++S  +K ++  +     + G      A+ +    I Q++  +          
Sbjct: 6   SNKIYKHVKSLYKK-KYRQKYNEFVIEGYKLYQEAIKSNIN-IKQVIIREG--------E 55

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N      V     +T + +       +G+    + +    +     S  ++ L+++NDP 
Sbjct: 56  NFIDEC-VYF-DSKTFNSLSEMN-NPEGIICVVSFIEQKDV----KSDQILFLENINDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA AF  + I+ +       ++   +SA G+L  +      N+ + L+K  S 
Sbjct: 109 NLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMNISY-ENI-NVLEKYKSN 166

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           GF+    S + + + + +    +K  LI+G E  G+  + ++ A     + M  + ++LN
Sbjct: 167 GFKIYETSLEKNSRSILEIKNKEKHVLIIGNEANGISDEIKKYADEFLIIPMDNVTESLN 226

Query: 265 VSNAAAVALYIT 276
            S AA+++++  
Sbjct: 227 ASIAASLSMFYL 238


>gi|291085009|ref|ZP_06570899.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291071645|gb|EFE09754.1| putative tRNA/rRNA methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 246

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 10/245 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 2   RRQRAEETRVYGENACQALFQSRPDAIVRAWFVQSVTPRFKEALRWMAANRKAYHVVDEA 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L+ + +PHN+G ++RS  
Sbjct: 62  ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVGQAGAQDCVLALEDIANPHNLGGMMRSCA 120

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F   G++     +  ES    ++A G  EH+  I   ++ D L      G+  +  SS 
Sbjct: 121 HFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDSIVDVLDDFRHAGYTVVMTSSV 179

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-- 273
             KPL      +K+ L+LG E + L             +   G ++ LNVS A  V L  
Sbjct: 180 KGKPLFTTTLPEKMVLVLGREREALPEAACSADDLCVAIDGTGNVETLNVSVATGVLLAE 239

Query: 274 YITQN 278
           +  QN
Sbjct: 240 WWRQN 244


>gi|78042655|ref|YP_360402.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 258

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 98/260 (37%), Gaps = 15/260 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWD 84
            +  YK+++   Q S    +     + G   V   + +N   K   +  +     ++D D
Sbjct: 9   ENSFYKELKKLYQDSAFRRKNGMFIVEGEKLVFELITDNWPLKYLVVSESYWQAKKIDDD 68

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                   +  +  Q  +KI         LA+     LS            +VLD + DP
Sbjct: 69  -----GVKIVVLTDQLFNKISELVTPPGILAVACMKSLSWP---AGKDGAFLVLDGLQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKM 202
            N+G +LR+A  F   G+I         +  + ++++G     P +R+    L D +  +
Sbjct: 121 GNVGTLLRAAFGFGVSGVILLPPAVDIYNPKVIRASAGTAFKFPVLRMEADELKDII--L 178

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                      S+   PL       K  + +G EG+G+    +        + MPG I++
Sbjct: 179 K-NNIPLFLAESEGGIPLTAIDFPAKFFVAVGNEGQGISTTLKSLPHQKISIPMPGKIES 237

Query: 263 LNVSNAAAVALY-ITQNHFA 281
           LN + A  + +Y   +N + 
Sbjct: 238 LNAALAGGIIIYEWAKNRYN 257


>gi|303248118|ref|ZP_07334383.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
           JJ]
 gi|302490517|gb|EFL50425.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio fructosovorans
           JJ]
          Length = 196

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 4/155 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEH 186
           A R + L +V+++++DPHN+ AILRS  AF    +     Y+ +    L K +SG A + 
Sbjct: 18  AKRQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLL--YTDTAFPALGKKSSGSAKKW 75

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   R  +       +   GF  +  S S++ +PL++     K+A+ILG E +G+  +  
Sbjct: 76  VETTRHPDAASLASSLKGQGFALVATSFSETARPLQEWDLTGKVAIILGNEHRGVDEELA 135

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  ++ M G++++LNVS AAAV LY      
Sbjct: 136 PYVDGALYIPMQGMVQSLNVSVAAAVILYEGFRQR 170


>gi|319943811|ref|ZP_08018092.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743044|gb|EFV95450.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 328

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 108/315 (34%), Gaps = 53/315 (16%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           +L+ S        +   + ++   +  R   +     L G H + + L    + + QL+ 
Sbjct: 14  ALRHSPVEIESAANPRLRHLRELLESGRERRRSGQTVLEGWHLLESWL-AGGQPVLQLVL 72

Query: 74  TKNALARLD------------WDANLPHPFPVKTVPPQTI-------DKIVGKEAVHQGL 114
            +    +L                  P   P + V PQ           +       + +
Sbjct: 73  PRRTFQQLGQGGEPSSPASRREHGRSPSANPWQRVSPQRQPGAPIPSGNVASMNGNPEMV 132

Query: 115 A-----------------LETAPLLSPTLDAVRNSQL----------LMVLDHVNDPHNI 147
           A                 L+  P  SP L  V   +           L++LD + DP N+
Sbjct: 133 AQAAQASWLVLDDWLFDQLDIMPSPSPLLAVVETPRPALPASAPDHDLVILDRIQDPGNV 192

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-- 205
           G ILR+A A     ++TT   +   +  + ++  G    +      N+   L+++ +   
Sbjct: 193 GTILRTAAAAGIRTVLTTAGTAACWAPKVLRAGMGGHFVLEI--HENIP--LEQLKAQVG 248

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                G      + L        +A + G EG+G+ P+ Q        +     +++LNV
Sbjct: 249 ALPLAGTVLQDGQSLYASDLRQPLAWVFGNEGEGIDPELQARLGCRLTIPQDPGVESLNV 308

Query: 266 SNAAAVALYITQNHF 280
           + +AAV L+  +   
Sbjct: 309 AASAAVCLFEQRRQR 323


>gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera]
          Length = 1306

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 110/290 (37%), Gaps = 32/290 (11%)

Query: 18   SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN----NPSRKIF--Q 70
            SH   +   ++   K        S +     +  + G   +            R +    
Sbjct: 1008 SHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEMDC 1067

Query: 71   LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-- 128
            LL    A      D        V ++  + +  +   E+V + +AL   P    +++   
Sbjct: 1068 LLILDKAEIPEGLDDFSVRLVRVSSMVMKKLSGLQSTESV-EAIALMRIPTSFFSVNDDT 1126

Query: 129  --------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                     ++   ++VLD + DP N+G +LRSA+AF   G+          +    +++
Sbjct: 1127 YEKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRAS 1186

Query: 181  SGALEHIPYIRISNLTDALQKMH-SWGFQTIGLSSDSKKP----------LEQEIKNDKI 229
             GA   +P +  S +   L+ +   +  + I    DS +           L   + +  +
Sbjct: 1187 RGASFQLPIVSGSWIH--LETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPL 1244

Query: 230  ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             L+LG+EG GL  K+ +    +  + M G  ++LNVS A  + LY+ Q  
Sbjct: 1245 CLVLGSEGSGLSEKSWQLC-ELVSIPMAGEFESLNVSVAGGIFLYMLQPQ 1293


>gi|204928623|ref|ZP_03219822.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322056|gb|EDZ07254.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 229

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|62182237|ref|YP_218654.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167549007|ref|ZP_02342766.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233268|ref|ZP_02658326.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235358|ref|ZP_02660416.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241923|ref|ZP_02666855.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260501|ref|ZP_02682474.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168818425|ref|ZP_02830425.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444680|ref|YP_002042992.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448230|ref|YP_002047774.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469893|ref|ZP_03075877.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735347|ref|YP_002116686.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|200387615|ref|ZP_03214227.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207858980|ref|YP_002245631.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585541|ref|YP_002639340.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910216|ref|ZP_04654053.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62129870|gb|AAX67573.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194403343|gb|ACF63565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406534|gb|ACF66753.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456257|gb|EDX45096.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710849|gb|ACF90070.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291598|gb|EDY30950.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604713|gb|EDZ03258.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205325898|gb|EDZ13737.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332504|gb|EDZ19268.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339031|gb|EDZ25795.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344462|gb|EDZ31226.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350250|gb|EDZ36881.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710783|emb|CAR35144.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470069|gb|ACN47899.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320088164|emb|CBY97926.1| putative RNA methylase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322716725|gb|EFZ08296.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 229

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|16767028|ref|NP_462643.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992299|ref|ZP_02573397.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16422312|gb|AAL22602.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329407|gb|EDZ16171.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248891|emb|CBG26745.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996007|gb|ACY90892.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160280|emb|CBW19803.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914769|dbj|BAJ38743.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226797|gb|EFX51847.1| tRNA Guanosine18-2'-O- -methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132104|gb|ADX19534.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990592|gb|AEF09575.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 229

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  + S G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKSRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|320011788|gb|ADW06638.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 279

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 12/245 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSR----KIFQLLATKNALARLD--WDANLPHPFPVKTVPP 98
           +       G   V  A  +        + +L AT  A  R     DA       V     
Sbjct: 28  KERRFIAEGPQAVREAAAHRGGDGEPTLTELFATVEAADRYADIVDAARAAGARVHLADG 87

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAF 157
             +   V +    QGL      L SP  + +     L+ VL HV DP N G +LR A A 
Sbjct: 88  DVLAD-VSQTVTPQGLIGVCRFLDSPFEEILAAKPTLVAVLAHVRDPGNAGTVLRCADAA 146

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++ T       +    +++ G+L H+P      + +A++ +   G + +      +
Sbjct: 147 GADAVVLTDASVDLYNPKSVRASVGSLFHLPVAVGVPVEEAVRGLRDAGVRILAADGAGE 206

Query: 218 KPLEQEIK----NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             L+ E+         A + G E  GL  +T+  A ++  + + G  ++LN++ AAAV L
Sbjct: 207 DDLDDELDAGTMGGPTAWVFGNEAWGLPEETRALADAVVRVPIHGKAESLNLATAAAVCL 266

Query: 274 YITQN 278
           Y +  
Sbjct: 267 YASAR 271


>gi|167911489|ref|ZP_02498580.1| RNA methyltransferase, TrmH family protein [Burkholderia
           pseudomallei 112]
          Length = 184

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           L    AP L       R +   +VLD V D  N+G+ILRSA A   + +      + + S
Sbjct: 21  LVARPAPALPA-----RVAGTSVVLDGVQDAGNVGSILRSAAAAGVERVFCAPGTAYAWS 75

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
           + + +SA GA   +      +    ++++           S   + +        +A + 
Sbjct: 76  SKVLRSAMGAHFLLDIHEDVDAGTLIERLA---IPVALTDSHGARAIYDCDLAGPLAWVF 132

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           G EG G+  + +E AT    +  PG +++LNV+ AAAV L+     
Sbjct: 133 GNEGAGVSARWREAATHRVTIPQPGGMESLNVAAAAAVCLFEQCRQ 178


>gi|157373473|ref|YP_001472073.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|157315847|gb|ABV34945.1| tRNA guanosine-2'-O-methyltransferase [Shewanella sediminis
           HAW-EB3]
          Length = 231

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  +NI A++R+A A     +     +   +  V   +ASG+ + +  
Sbjct: 16  RQPDLTLCLDKVHKTNNIAAVIRTADAVGIHQVHA--IWPDLDMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           IR  ++ +A  +  + G Q +  + S+      +       A+ILG E  G+ P+    A
Sbjct: 74  IRHDHMDEAQTQFRAQGMQILATNFSEDAVDFREIDYTRPTAIILGNERDGVSPEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ +Y  Q   
Sbjct: 134 DQHIIIPMIGMVQSLNVSVASALIMYEAQRQR 165


>gi|206577394|ref|YP_002235981.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
 gi|206566452|gb|ACI08228.1| tRNA guanosine-2'-O-methyltransferase [Klebsiella pneumoniae 342]
          Length = 229

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       PS     +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEV---HAVWPSSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIADAVGHLKGQGMQILATHLSDKAIDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|156365597|ref|XP_001626731.1| predicted protein [Nematostella vectensis]
 gi|156213618|gb|EDO34631.1| predicted protein [Nematostella vectensis]
          Length = 301

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 114/269 (42%), Gaps = 39/269 (14%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L R+H    + ++ + + +  +     F++G+     AL++  RK+F++   + A    +
Sbjct: 38  LTRHHSGSTRYETKSTR-KSGTSSRREFIFGIGPCVLALSSGRRKVFKIYMNEEAN---N 93

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHV 141
               L   FPV                    + L    +    ++ + +   L++ LD +
Sbjct: 94  TTRILLWKFPVSIF-----------------VILMKRMMSYKGINHIASLHPLVLALDEI 136

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N GAI+R++     D I+  K+ S   S V++K+++GA+E     +  +L   LQ+
Sbjct: 137 QDPMNFGAIIRTSWLLGVDKIVVPKQNSAPLSPVVSKASAGAMEVFNVYQTPDLPKFLQE 196

Query: 202 MHSWGFQTIGL-------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             + G+  +G        S        +   +    L+LG EG+GLR   Q+  T +  +
Sbjct: 197 RAAIGWDVLGAVQPITDDSHHRPVNCAEYSLSKPTVLVLGNEGRGLRNTVQQQCTQLLSI 256

Query: 255 HMPGII---------KALNVSNAAAVALY 274
           + P             + NVS AA + ++
Sbjct: 257 Y-PHQAQNSFQSIDLDSFNVSVAAGILVF 284


>gi|313679270|ref|YP_004057009.1| tRNA guanosine-2'-o-methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313151985|gb|ADR35836.1| tRNA guanosine-2'-O-methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 214

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--- 173
           E    L   LD  R   L +++++V+ PHN+ AILR+A A         + ++ + +   
Sbjct: 4   ERYRRLRDVLDK-RQPDLTVLMENVHKPHNLSAILRTADAVGV-----YEAHAVNPTGGV 57

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
                ++ G+ + +      N+  AL+ +   GF     + S+      +       A++
Sbjct: 58  PTFHDTSGGSEKWVYLRVHPNVEAALEHLKGRGFTVYAANLSERAVDYREVDYTRPSAVL 117

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           LGAE  G+ P+  E A +   + M G++++LNVS AAAV L+  Q
Sbjct: 118 LGAEKWGVSPRAAELADADVIIPMMGMVQSLNVSVAAAVILFEAQ 162


>gi|149919144|ref|ZP_01907628.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
 gi|149820074|gb|EDM79495.1| 23S RIBOSOMAL RNA METHYLTRANSFERASE [Plesiocystis pacifica SIR-1]
          Length = 287

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 107/249 (42%), Gaps = 15/249 (6%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           R   +     + G   V   L    R  +  L+ T +  ARL  +A LP   P   +P +
Sbjct: 38  RGRREDGRFIVEGALAVERLLEQAERFPVESLVCTPSHGARL--EAALPPGVPAFVLPRK 95

Query: 100 TIDKIVGKEAVHQGL--ALETAP----LLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAIL 151
            I ++ G +  H+G+       P    L    ++A+R  +   ++V   + DP N+GA++
Sbjct: 96  RIAELAGFD-FHRGVLACARRPPTRAVLEPWEIEALRRREQVTVVVASGLADPRNLGALI 154

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HSWGFQTI 210
           R+A AF  D ++   R + + + +  +++ G +  +P +    L   ++++        +
Sbjct: 155 RNAAAFGVDWVVVDGRGADAFARLTIRASVGNVFRVPLLVSEALPATVEQLRRELPATVV 214

Query: 211 GLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             +   +  L+     +  +  +++G EG GL       A     + +     ++NV+ A
Sbjct: 215 AATPAGELELDALAVDRPARQIVLVGNEGAGLDEDALARADRRVRIPVVAGADSVNVAAA 274

Query: 269 AAVALYITQ 277
            A+ LY  +
Sbjct: 275 TAILLYALR 283


>gi|119960734|ref|YP_947381.1| 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119947593|gb|ABM06504.1| putative 23S rRNA methyltransferase [Arthrobacter aurescens TC1]
          Length = 303

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 101/279 (36%), Gaps = 34/279 (12%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--------IFQLLATKNALA 79
           RD  K+     + +           G   V  AL     +        + ++ A++  L 
Sbjct: 21  RDVAKLAGRPARLKR----GRFLAEGPQAVREALTLHRERTAAGGPAVVHEVFASEACLE 76

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMV 137
           RL   A+L     ++    + +  +       QG+    +  +  +LD+V     +L+ V
Sbjct: 77  RLPELADLALGTLLRLASDEVLAAMADT-VNPQGIVAVCS-FVDVSLDSVLDAGPRLIAV 134

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +  V DP N G +LR+A A   D ++ T       +    +S +G+L H+P +  +++ +
Sbjct: 135 MCQVRDPGNAGTVLRAADAAGADAVVLTGSSVDIYNPKAVRSTAGSLFHLPVVLGADVEE 194

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLE------------------QEIKNDKIALILGAEGKG 239
            + +    G   +         L+                          A + G E +G
Sbjct: 195 LVAQCRRRGIGILAADGYGTVNLDKLQDENAARRLGNGSVASDYALESPTAWLFGNEAQG 254

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L       A     + + G  ++LN+  AA V LY +  
Sbjct: 255 LSDAELALADHRVAVPVYGAAESLNLGTAATVCLYASAR 293


>gi|326388507|ref|ZP_08210101.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206972|gb|EGD57795.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 279

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++S   K +H  + E     G+  ++ A          L+A+      L  D 
Sbjct: 22  SNPTIKFVRSLRDK-KHRRREERFLAEGLRLLTDAREGGRLPEILLMASGRDEHPLLSDL 80

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDH 140
                     V  VP   + K+ GK+   Q             L  +  + + + +V+  
Sbjct: 81  EQAVVESGGDVIEVPTDILAKVTGKD-NPQ-AVAGVYAEWDTGLSTIDRKAAPIWLVVQA 138

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G +LR+A A    G+I     +   S    +++ GA+      +     +  +
Sbjct: 139 MRDPGNLGTMLRTADAVGAGGLILLDDCADPFSVEAVRASMGAIFTQRLAQAR-WAEFQE 197

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +     Q +  S    +P           +++G E +GL  + +        + M G  
Sbjct: 198 WLRQGEGQLVAASLRDAQPYRGAPYAAPCFVMVGNESRGLPEEYEMACDLRVTMPMKGRA 257

Query: 261 KALNVSNAAAVALYIT 276
            +LN + A AV  Y  
Sbjct: 258 DSLNAAVAGAVLAYEV 273


>gi|324521326|gb|ADY47830.1| RRNA methyltransferase 1 [Ascaris suum]
          Length = 334

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 125/280 (44%), Gaps = 36/280 (12%)

Query: 11  KIFSLKDSHYAKLRRNHRDYK-----------KMQSFNQKSRHTSQPE--NLFLYGVHTV 57
           KI++ K      L  ++R +            ++ ++ +++R    P+     +YG + V
Sbjct: 26  KIYAEKFVRRKTLNDHYRPFNSAFRKALTAGVEINAYCKRNRSVMVPKVRGEIVYGTYPV 85

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPH---------PFPVKTVPPQTIDKIVGKE 108
             AL    R I++L A  + L R   D  +              +K +    +D +   +
Sbjct: 86  LEALKANRRSIYKLFAKASVLGRAKQDDIIAKKILRLANDSGVDIKALNADQLDVLTEYQ 145

Query: 109 AVHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            +H GL ++ +PL    L  + + N+++ + LD V DP NIGAI+RS   F  DG+I  +
Sbjct: 146 -LHNGLCIDASPLSYEVLCDEDIVNAKIFLYLDKVLDPGNIGAIIRSCFYFRIDGVILAR 204

Query: 167 RYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-------K 218
              P   +A ++K+++GALE  P   + +     +++ + GF+ I  S ++         
Sbjct: 205 DQGPKTLTAAMSKASAGALERFPVYTVEDFPSFRKRLRNVGFKFIATSDENSAITKGYQS 264

Query: 219 PLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLH 255
           P+        NDK+ +ILG EG+G+          +  + 
Sbjct: 265 PIRLPDFRPINDKVVIILGDEGRGIATDILSQCDYIVQIP 304


>gi|253690572|ref|YP_003019762.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251757150|gb|ACT15226.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 230

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHNI A++R+A A     +      S      L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVHAIWPTS--RMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                N+ DA+  + + G Q +  + S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|294506400|ref|YP_003570458.1| RNA methyltransferase [Salinibacter ruber M8]
 gi|294342728|emb|CBH23506.1| Putative RNA methyltransferase [Salinibacter ruber M8]
          Length = 262

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 9/216 (4%)

Query: 67  KIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP- 124
            + +++ T          A L      V    P T+  +   E   QG+       L   
Sbjct: 45  PLVEVVVTPEGRGDPTVQALLEQLSVSVHETDPDTMTTLTDVE-TPQGVVAVAERRLRDP 103

Query: 125 --TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
               + +  +  ++VLD + DP N+G +LR+A  F    ++     +      + ++ +G
Sbjct: 104 ETVPEQIGEAGTVLVLDGIQDPGNVGTLLRTAAWFGAQAVVAGPGTAGLYGPKVMRAGAG 163

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +   +P  R       L ++   G    G      +  +    +   AL+LG+E  GL  
Sbjct: 164 SHWALPLARTDAPGPFLDRLRRHGAALYGADLQGTRA-DAWGPDRPSALVLGSEAHGLSA 222

Query: 243 KTQETATSMAHLHMPGI---IKALNVSNAAAVALYI 275
              +       L         ++LNV+ A  + LY 
Sbjct: 223 AVLDRLDLTVSLPGAPDRPAAESLNVAVAGGILLYE 258


>gi|124267154|ref|YP_001021158.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124259929|gb|ABM94923.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 261

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 12/260 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLD 82
            R++    +++   Q      +   ++L G H   A ++        +++       RL 
Sbjct: 10  SRDNALLVRLRKLAQDPGAYRKLGAVWLEGDHLCEACVSRGVVPAQAVVSEAGWVDPRLQ 69

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             A       V  V      ++ G E+  + G  L+ A        AV+     +VLD +
Sbjct: 70  RLARAAPRIAV--VADALFAQLSGLESPARLGFVLDHA----TEATAVQAGVATVVLDRL 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G++LRSA A     ++  K  +   S+ + ++  GA   +  +  + + D    
Sbjct: 124 QDAGNVGSVLRSAAALGVAQVVALKGTAALWSSKVLRAGMGAHFALHLVESAEVGD---- 179

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + + G   +  SS +   L +         +LG EG+G+        +    +  PG  +
Sbjct: 180 LDALGVPLLATSSHAGLALAEGRLPSPCGWVLGHEGQGVGKALLARCSETRRIPQPGGQE 239

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ AAA+ LY +     
Sbjct: 240 SLNVAAAAAICLYESLRQRG 259


>gi|197250973|ref|YP_002148674.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198245054|ref|YP_002217703.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197214676|gb|ACH52073.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197939570|gb|ACH76903.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|322612909|gb|EFY09861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618974|gb|EFY15861.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625249|gb|EFY22076.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630083|gb|EFY26856.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634275|gb|EFY31010.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635824|gb|EFY32533.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642973|gb|EFY39551.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645034|gb|EFY41565.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649866|gb|EFY46289.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653073|gb|EFY49408.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661108|gb|EFY57336.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662403|gb|EFY58616.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667281|gb|EFY63447.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674342|gb|EFY70435.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678450|gb|EFY74511.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680956|gb|EFY76990.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687108|gb|EFY83081.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193170|gb|EFZ78388.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198251|gb|EFZ83357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200869|gb|EFZ85939.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206623|gb|EFZ91581.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210464|gb|EFZ95350.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216247|gb|EGA00975.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220470|gb|EGA04924.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225334|gb|EGA09568.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228448|gb|EGA12579.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234269|gb|EGA18357.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237254|gb|EGA21321.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244773|gb|EGA28777.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245852|gb|EGA29842.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250965|gb|EGA34841.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257287|gb|EGA40986.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262211|gb|EGA45772.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264578|gb|EGA48082.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268867|gb|EGA52325.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 229

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|89255916|ref|YP_513278.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314398|ref|YP_763121.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156501905|ref|YP_001427969.1| RNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009182|ref|ZP_02274113.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367276|ref|ZP_04983303.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|89143747|emb|CAJ78949.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129297|gb|ABI82484.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253093|gb|EBA52187.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252508|gb|ABU61014.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 218

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 10/213 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L      D +A++ GAEG G+R +T+       
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTKAIVNPRV 216


>gi|298346938|ref|YP_003719625.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389351|ref|ZP_07371316.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656609|ref|ZP_07909496.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236999|gb|ADI68131.1| rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327469|gb|EFL94702.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492564|gb|EFU82168.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 283

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 109/265 (41%), Gaps = 18/265 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVS-AALNNPSRKIFQLLATKNALARLDWDANL 87
           DY +++  N + R     + LF+   + V   AL         LLA         + A  
Sbjct: 17  DYTQLKDVNLR-RSLEAEQGLFMAESNEVIGRALRAGFTPRSLLLAPHWLEIIRPFLAAS 75

Query: 88  PH--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
           P         P PV       ++++VG       +A           + ++++  +++L+
Sbjct: 76  PATGFAPDGGPIPVFVASEDLLERLVGFHLHRGAIAAMLRKPAPNPREILKHASRVLILE 135

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + D  N+GA +RSA A   D I+ T   +        + + G +  +P+ R+    D  
Sbjct: 136 DLVDHTNVGAAVRSAAACGYDAIMVTPSCADPLYRRAVRVSMGTIFQVPWTRLERWPDP- 194

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQ------EIKNDKIALILGAEGKGLRPKTQETATSMA 252
              H  GF+   L+  +  + L           + K+ALI GAE  GL+P+T   A  + 
Sbjct: 195 ALFHEAGFELAALALREDSQDLRDYAMELGAAPSRKVALIAGAERDGLKPQTIARADKVV 254

Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277
            + M   + +LNV+ A A+A + T 
Sbjct: 255 RIAMAHGVDSLNVAGAIAIACWATA 279


>gi|161505720|ref|YP_001572832.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867067|gb|ABX23690.1| hypothetical protein SARI_03896 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 218

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 3   ARRQPDLTICMEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 60  VQVKTHRTIGDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|285019054|ref|YP_003376765.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283474272|emb|CBA16773.1| putative trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 277

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 8/226 (3%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDK 103
            + L LYG + V A        I +L   +  +  L       + H    + V    ++K
Sbjct: 31  RDELRLYGFNAVRAVYARRPEAIRKLYLAEARIPALQPLLKWCVAHRVGYRVVDDNDLNK 90

Query: 104 IVGKEAVHQGLALET-APLLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFS 158
           +    A H+G+  +       P  D +R       L + LD V +PHN GAILRSA  F 
Sbjct: 91  LAAS-AHHEGVVADVLREAPLPLADWLRTLAPGPALALWLDGVGNPHNFGAILRSAAHFG 149

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              I+  +  + + S   A+ A G  E +P +R+     AL ++ +  F       +   
Sbjct: 150 AAAILLPEGATLALSGAAARVAEGGAEAVPLVRLPAPAQALAQLRNADFALAATLVEGGD 209

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            L       ++  ++GAE  G+     +       +   G +++LN
Sbjct: 210 ALFATALPQRLIYVMGAERDGMDRGFAQACDLRLSIPGSGAVESLN 255


>gi|261749221|ref|YP_003256906.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497313|gb|ACX83763.1| (guanosine-2'-O-)-methyltransferase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 259

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 100/255 (39%), Gaps = 12/255 (4%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++   +KS         F+ G+     A+      I ++   K    + +   +  H
Sbjct: 12  IKNLRKIYKKSSRKI----FFVEGIKEFEMAIKGNFFPI-EIFICKKIFHKYNLIKSFNH 66

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDHVNDPHNI 147
              V  +  +   K+  +E    G+           L+ ++   +  +++LD +  P N+
Sbjct: 67  --IVFFISIKAFKKLAYRE-NSGGIIALFKRKNLERLENIKIYKNPFILILDGIEKPGNL 123

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G++LR A A     II     +   +  + + + G++     + I      +  +     
Sbjct: 124 GSMLRIADAVGVHFIILCNIKTYIYNPNIIRCSLGSVFTNKIL-IEKKKSIISWLQKKKI 182

Query: 208 QTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           + +      K   L +   + ++A++LG+E KG+ P     A  +  + M G + +LNVS
Sbjct: 183 EIVVTGFHEKAIQLYRTKFSSRLAIVLGSENKGVSPIWLNIAHKIVTIPMFGDMDSLNVS 242

Query: 267 NAAAVALYITQNHFA 281
           NA ++ +Y       
Sbjct: 243 NAMSIMIYEVLRQRN 257


>gi|258573751|ref|XP_002541057.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237901323|gb|EEP75724.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 582

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 106/314 (33%), Gaps = 88/314 (28%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA-------TKNALARLDWDANLP--HPFPVKTVPP 98
           + F+YG   V AA+    RKI+ L         TK A   ++            VK V  
Sbjct: 232 SEFIYGYSAVRAAVLASRRKIYALYIYDADPSSTKWAQPEVNALQKHATVAGATVKLVSG 291

Query: 99  QTIDKI--VGKEAVHQGLALETAPLLSPTLDAVR-------------------------- 130
             +  +  +  +  H G   E +PL      +++                          
Sbjct: 292 TWLKMMNRMSDDRPHNGYVAEVSPLPKLPATSLKAVTTLPATHFTVNVASQPKEEADING 351

Query: 131 ---------------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                                    +++LD + DP N+GAI+RSA  F  D I  + R S
Sbjct: 352 SDGHIPLMSQRNTDHISQQTPRYPFILLLDGILDPGNLGAIIRSAYFFGADAIAFSSRNS 411

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK----------- 218
              SAV  K+++GA E++P I I +    +      G++       +             
Sbjct: 412 APLSAVTIKASAGAAENMPLISIHDPATFIDTSRGNGWRFFAAEPPASTFDDSQAQVDTM 471

Query: 219 ----------PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM---------PGI 259
                      L  E +     L+LG+EG GL    +  A +   +           P  
Sbjct: 472 LTKTPILSPHNLSAEPRKSPCVLMLGSEGYGLSKYLKRKADAFVAIPGAQAAGLSDDPAG 531

Query: 260 IKALNVSNAAAVAL 273
           + +LNVS A+A+  
Sbjct: 532 VDSLNVSVASALLC 545


>gi|239917665|ref|YP_002957223.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|281413844|ref|ZP_06245586.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239838872|gb|ACS30669.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 280

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 101/242 (41%), Gaps = 8/242 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  M     + R  ++           V  AL+        LL  +   +  D  A  P 
Sbjct: 25  YTTMTDAALRRRVDAEHGVFLAESSQVVRRALDAGHTPRSFLLGDRYRGSFADVLAAHP- 83

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T P   ++ + G       LA    P   P  D +  ++ +++ + V D  N+GA
Sbjct: 84  DVPVFTGPDDVLEALTGFHLHRGALAAMDRPAPRPLADVLAGARRVLIAEDVVDHTNLGA 143

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQ 208
           ++RSAVA   D ++ T + +        + + G +  +P+ R+   + ++L  + + GF 
Sbjct: 144 VVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAESLPALRAAGFA 203

Query: 209 TIGLSSDSKKP------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              L    +        +E     +++AL+LG EG G+RP+T     +   + MP  + +
Sbjct: 204 VAALEVTERAVGLDSPEIEPLRTAERLALVLGQEGPGVRPETLAQTDADVVIPMPDGVDS 263

Query: 263 LN 264
           LN
Sbjct: 264 LN 265


>gi|302914804|ref|XP_003051213.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI
           77-13-4]
 gi|256732151|gb|EEU45500.1| hypothetical protein NECHADRAFT_41813 [Nectria haematococca mpVI
           77-13-4]
          Length = 710

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 104/292 (35%), Gaps = 68/292 (23%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD------ANLPHPFPVKTVPPQT--- 100
           FLYG   V AAL    RK++ L        R + D             P+  VP +    
Sbjct: 312 FLYGRSVVKAALEQGRRKLYNLYIYGGENRRDNKDNTFLSRLAEKQGVPITIVPTEEQRL 371

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRN----------------------------- 131
           +DK+      H G  LE +PL    + ++                               
Sbjct: 372 MDKM-SMGRPHNGFVLEASPLPQLPIRSLGKLEETPARLGFHVALDFQTKEEEAINGTES 430

Query: 132 ----------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                        +++L+ + DP N+G I+R+A     D +  T R S + + V  KSA+
Sbjct: 431 FFRRANDVMPKPFVLLLNEIMDPGNLGGIIRTASYLGIDAVGITSRGSSTLTPVALKSAA 490

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-----EQEIKND--------- 227
           GA+E I    + +    ++     G++T    +   + L     ++ I  D         
Sbjct: 491 GAVEEISLFTVDDPLRFIEDSRKAGWKTFAAVAPPDRKLVRKHGDKFISTDVIEANSPLN 550

Query: 228 --KIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNAAAVALY 274
                L+LG EG GL    +  A     +        I +LNVS AA +  +
Sbjct: 551 EHPCLLVLGNEGHGLSKPLKVAADYELSVPRFVQGSCIDSLNVSVAAGLLCH 602


>gi|153833892|ref|ZP_01986559.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
 gi|269959394|ref|ZP_06173777.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|148869730|gb|EDL68707.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi HY01]
 gi|269835831|gb|EEZ89907.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 227

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKV---HAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|156972948|ref|YP_001443855.1| tRNA guanosine-2'-O-methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524542|gb|ABU69628.1| hypothetical protein VIBHAR_00626 [Vibrio harveyi ATCC BAA-1116]
          Length = 227

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKV---HAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|288550202|ref|ZP_05969599.2| hypothetical protein ENTCAN_08219 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316108|gb|EFC55046.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 218

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P      +  +A+G+   
Sbjct: 3   ARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV---HAVWPGARMRTMVSAAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +   G Q +  + SD      +        +++G E  G+  +  
Sbjct: 60  VSVKSHQTIGDAVSHLKGRGMQVLATNLSDKAVDFREIDYTRPTCILMGQEKTGISQEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 154


>gi|260770799|ref|ZP_05879728.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|260614036|gb|EEX39226.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
          Length = 228

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SA 174
           L+    +   L A R + L + L+ V+ P+N+ A++R+A A     I       P+E   
Sbjct: 3   LDRYARIQEVLKA-RQTDLTVCLEEVHKPNNVSAVIRTADAVGLHKI---HAVWPNEQMR 58

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
            L  +++GA   +     ++  DA++ + + G Q +  + SD              A+I+
Sbjct: 59  TLTHTSAGARNWVEVETHNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIV 118

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+E  G+  +    A     + M G++++LNVS A+A+ LY  Q    +
Sbjct: 119 GSEKVGISKQALALADQDIVIPMVGMVQSLNVSVASALILYEAQRQRQQ 167


>gi|315178841|gb|ADT85755.1| tRNA guanosine-2'-O-methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 228

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SA 174
           L+    +   L A R + L + L+ V+ P+N+ A++R+A A     I       P+E   
Sbjct: 3   LDRYARIQEVLKA-RQTDLTVCLEEVHKPNNVSAVIRTADAVGLHKI---HAVWPNEQMR 58

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
            L  +++GA   +     ++  DA++ + + G Q +  + SD              A+I+
Sbjct: 59  TLTHTSAGARNWVEVETHNSTLDAIKTLKAQGMQVLVTNLSDDAVDFRDIDYTQPTAIIV 118

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+E  G+  +    A     + M G++++LNVS A+A+ LY  Q    +
Sbjct: 119 GSEKVGISKQALALADQDIVIPMVGMVQSLNVSVASALILYEAQRQRQQ 167


>gi|260435563|ref|ZP_05789533.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
 gi|260413437|gb|EEX06733.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
          Length = 250

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 104/249 (41%), Gaps = 29/249 (11%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + L G H +   L   +    +++AT+  L      A L      + V  + + +     
Sbjct: 1   MLLEGTHLLQEVLRQGNAP-EEIIATEAWLQGHSAMAELCSQARWRIVTDEVL-RAALTT 58

Query: 109 AVHQGLA----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               G+A    L+  P + P LD       L+VLD + DP N+G +LR+A+A   + +  
Sbjct: 59  VTPDGVACLSPLDRLPTVPPELD------FLLVLDRIQDPGNLGTLLRTALAADVNAVW- 111

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGLS--- 213
                      + ++++GAL  +P+ R        IS L   L+++ S+G Q +      
Sbjct: 112 MGAGVDPLGTKVLRASAGALLQLPHQRFGPSEAMAISQLLQELKQLVSFGVQVVATLVPD 171

Query: 214 ---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
              +D   P          AL+LG EG GL P  Q   T    L     +++LNV+ +AA
Sbjct: 172 ATKADPPSPYWDLDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVA-SAA 230

Query: 271 V-ALYITQN 278
           V  L   + 
Sbjct: 231 VPLLLERRR 239


>gi|303249293|ref|ZP_07335525.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           fructosovorans JJ]
 gi|302489299|gb|EFL49256.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           fructosovorans JJ]
          Length = 264

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 99/253 (39%), Gaps = 13/253 (5%)

Query: 32  KMQSFNQKSRHTSQPE-NLFLYGVHTVSAALNNPSRKIFQLL---ATKNALARLDWDANL 87
           +   F+      + PE    L G   V   L    R I  +L     +         A  
Sbjct: 6   RNNRFSSAPHSGAAPEPGELLPGRKPVRELLAERPRGIDDVLLRQGLRGPDIDAIVAACR 65

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHV 141
                 + V    +D++      HQG+    A     +LD V  +       + + LD V
Sbjct: 66  EARVRFRFVAAADLDRLCP--GNHQGVVARLAAGELTSLDDVLAATRAAPLPVAVALDRV 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G + R+  A    GI+  +          AK+++G L  +P  +++NL  AL  
Sbjct: 124 QDPGNVGTLARTLFALGGGGILLPRHEGARLGPGAAKASAGTLARLPVAKVTNLAQALDA 183

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               GF  +G + + +     E   D  + L+LG E +G+R   ++    +  +     I
Sbjct: 184 AIEAGFSIVGAAGEPEADNALEATADFPLILVLGNEDEGIRQGIRKRCGRLWRIPQARPI 243

Query: 261 KALNVSNAAAVAL 273
            +LNV+ A A+ L
Sbjct: 244 DSLNVAQAGAIIL 256


>gi|193214880|ref|YP_001996079.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
           35110]
 gi|193088357|gb|ACF13632.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
           35110]
          Length = 272

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 96/255 (37%), Gaps = 16/255 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN--NPSRKIFQLLAT---KNALARLD 82
           +  +K  +     +   + +     G+ TV+  L+  N    +  ++      N L + D
Sbjct: 17  KQKRKFFARLHDKKFREKEQLFLAEGLRTVTELLSACNAEDDLVAIVVKVPIDNDLKKPD 76

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQLLMVL-- 138
            +A       V        + I   E      G+  +     +     +   +  +VL  
Sbjct: 77  CNAG-----KVFVAEKSDFETISATEQTQGVVGIFRQPKADEASVFQQLEEKKTALVLIW 131

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N G ++R+A  F  D I  +       +  + ++++G+L  +P I+ ++L   
Sbjct: 132 DGIQDPGNAGTMIRTAAWFGADAIFASHDSVDFFNPKVVRASAGSLFALPLIKSASLGFV 191

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-P 257
           + ++          S  +   + +  K  K ALI+G+E  G+             +    
Sbjct: 192 VDELKQKRLTVYASSP-AGTSIWEVSKPKKTALIIGSEANGVTSALFLKTDQQITIPGNS 250

Query: 258 GIIKALNVSNAAAVA 272
             +++LN + +A + 
Sbjct: 251 SAVESLNAAISAGIL 265


>gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum
 gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 257

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 113/284 (39%), Gaps = 38/284 (13%)

Query: 1   MNLISKKKSEKIFSL-KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           + +I+  K+E+I    +  H  K R  ++ +                    + G   +  
Sbjct: 2   LKIITSNKNEEIIHFYRLIHDKKYREANKLF-------------------IIEGFKLLDE 42

Query: 60  ALNNPSRKIFQLLATK---NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           AL N  + I  ++  +   N      +   L     +  V    I K+         + +
Sbjct: 43  ALQN-QQTIVSIIINEHVYNKEFETIFKYTLYDNIQIYKVSGNIIKKLS--------VNI 93

Query: 117 ETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           E +P+L+      +    +  +++LD++ DP N+G ILR+  AF+   +I         +
Sbjct: 94  EPSPILAVVKIKQEMCDINDNILLLDNIQDPGNLGTILRTCFAFNIKQVI-FNNCVDLYN 152

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALI 232
               K++ GA+  I ++R ++   AL  +    F  I    D +   L +     K  L+
Sbjct: 153 PKTIKASMGAIFKINFLRFNDSKLALNFLLKNKFYLIATILDKNAISLNEITIKQKYCLM 212

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +G EG GL     + A     + M    ++LNV+ AAA+ LY  
Sbjct: 213 VGNEGHGLVQTFIDHAHIKTMIKM-NQTESLNVAVAAAIFLYEL 255


>gi|303233677|ref|ZP_07320331.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
 gi|302495111|gb|EFL54863.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
          Length = 243

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 112/252 (44%), Gaps = 20/252 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++ YK ++S  +K ++  +     + G      A+ +    I Q++  +          
Sbjct: 6   SNKIYKHVKSLYKK-KYRQKYNEFVIEGYKLYQEAIKSNIN-IKQVIIREG--------E 55

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N      V     +T + +       +G+    + +    +     S  ++ L+++NDP 
Sbjct: 56  NFLDEC-VYF-DSKTFNSLSEMN-NPEGIICVVSFIEKKDV----KSDQILFLENINDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA AF  + I+ +       ++   +SA G+L  +      N+ + L+K  S 
Sbjct: 109 NLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFRMNISY-ENI-NVLEKYKSN 166

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           GF+    S + + + + +    +K  LI+G E  G+  + ++ A     + M  + ++LN
Sbjct: 167 GFKIYETSLEKNSRSILEIKNKEKHVLIIGNEANGISDEIKKYADEFLIIPMDNLTESLN 226

Query: 265 VSNAAAVALYIT 276
            S AA+++++  
Sbjct: 227 ASIAASLSMFYL 238


>gi|256819298|ref|YP_003140577.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256580881|gb|ACU92016.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 243

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 96/244 (39%), Gaps = 20/244 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+    Q+ ++ ++     + G  ++   L    R +  L+AT+         A   +  
Sbjct: 8   KLIQKLQQKKYRNELNLFIVEGKKSIVEFLQAGYR-LELLIATE-------VFATALNGQ 59

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           P+  V  + + K+   +   +GLA+            +    +++ LD+V DP N+G ++
Sbjct: 60  PITLVSKEELRKVSSLKNPDEGLAI----FHQRQHKGILQEGVILALDNVQDPGNLGTLI 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F  + +I   +     +  + ++  G+L  +    + +L   L            
Sbjct: 116 RLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYV-DLAGFLATCA---LPLYA 171

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNA 268
           +  D +     E   D   LILG E  G+ P+ +  A  +  +   G     ++LNV+ A
Sbjct: 172 MDLDGENLYTTEFPED-CVLILGNEANGISPEVRALADGIITIPRFGKLQQTESLNVAMA 230

Query: 269 AAVA 272
            A+ 
Sbjct: 231 GAIV 234


>gi|78356529|ref|YP_387978.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218934|gb|ABB38283.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 196

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R   L +VL +++DPHN+ AI RS  AF    +            +  +S++ A + +
Sbjct: 18  SLRQKDLTLVLANIHDPHNVSAIYRSCDAFGVSRVHLY-YTDTPFPPLSGRSSASARKWV 76

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              R  +       +   G + +  S S S +PL +       A+I+G E +G+  +  E
Sbjct: 77  ETERHEDPAQLAAALRKKGCRILATSCSPSARPLREWDMTGPTAIIMGNEHRGVDAELME 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 ++ M G+I++ NVS AAAV L        +
Sbjct: 137 IVDGEVYIPMFGMIQSFNVSVAAAVILSEASRQRQQ 172


>gi|150009602|ref|YP_001304345.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256838324|ref|ZP_05543834.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|262383110|ref|ZP_06076247.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
 gi|149938026|gb|ABR44723.1| tRNA/rRNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|256739243|gb|EEU52567.1| tRNA/rRNA methyltransferase [Parabacteroides sp. D13]
 gi|262295988|gb|EEY83919.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_33B]
          Length = 176

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   T +A + S    L++VLDH+   +N+G++ R++ AF  + I      +   
Sbjct: 4   LKVTELNRLTPEAFKESKKIPLIVVLDHIRSLNNVGSVFRTSDAFRVEAIYLCGITACPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKI 229
           +A + K+A GA E + +    +  +A+ K+   G+    +  ++    L+  Q  K  K 
Sbjct: 64  NAEIHKTALGAEETVDWEYFKDTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A+++G E KG++    +       +   G   +LNVS    + ++      +
Sbjct: 124 AIVMGNEVKGVQQNVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQLS 175


>gi|28896932|ref|NP_796537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365880|ref|ZP_05778374.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|260877833|ref|ZP_05890188.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260895518|ref|ZP_05904014.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|28805140|dbj|BAC58421.1| tRNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088577|gb|EFO38272.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308089712|gb|EFO39407.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308113480|gb|EFO51020.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           K5030]
 gi|328471708|gb|EGF42585.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 227

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKV---HAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  ETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|114564277|ref|YP_751791.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335570|gb|ABI72952.1| tRNA guanosine-2'-O-methyltransferase [Shewanella frigidimarina
           NCIMB 400]
          Length = 233

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  +NI A+LRSA       I     +   +  V   +ASG+ + +  
Sbjct: 16  RQVDLTVCLDKVHMTNNIAAVLRSADCVGIHQIHAV--WPDDDMRVSGNTASGSQQWVDT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           ++     +A Q       Q +  + SDS     +       A+++G E  G+  +    A
Sbjct: 74  VKHYTFEEAHQAFKKQKMQVLTTTFSDSAVDFREIDYTQPTAIVMGNERDGVSAEAIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA+ +Y  Q   
Sbjct: 134 DQHIIIPMRGMVQSLNVSVAAALVMYEAQRQR 165


>gi|308176903|ref|YP_003916309.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744366|emb|CBT75338.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 292

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 33/283 (11%)

Query: 26  NHRDYKKMQSFNQ--KSRHTSQPENLFLYGVHTVSAALNNPSRK---IFQLLATKNALAR 80
           ++   +++++  +  KS+         + G   V  AL         +  +      L  
Sbjct: 10  SNPRAERVKAIARLAKSKGREATGEYLVEGPQAVREALKAHLEDDNLVQNVYVVGGFLES 69

Query: 81  LDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETA---PLLSPTLDAVRNSQLL 135
            +    L     ++   V  + +  +   +   QG+    A   P LS  LD     +L+
Sbjct: 70  HEEFETLLEDAKIQPRIVTGEVLHAMADTQ-TPQGILAVVAMSQPQLSEVLDT--KPKLI 126

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
            VL  + DP N G ILR+A A   D +I TK      +    +S  G+L H+P +     
Sbjct: 127 AVLCRIQDPGNAGTILRAADAAGADAVILTKGSVDIYNPKAVRSTVGSLFHLPVLNNVEF 186

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE--------------------QEIKNDKIALILGA 235
              +    + G Q +     +   L+                    Q +       + G 
Sbjct: 187 DHLIAAAKTTGSQVLAADGYAAHNLDTLQDAAVLRANQPGTEAPEGQPVLEAPTLWLFGN 246

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           EG+GL    ++ A     + + G+ ++LNV  A+ V LY +  
Sbjct: 247 EGQGLDEHEKQAADYRVAVPLYGVAESLNVGTASTVCLYASAR 289


>gi|153837870|ref|ZP_01990537.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
 gi|149748733|gb|EDM59578.1| tRNA guanosine-2'-O-methyltransferase [Vibrio parahaemolyticus
           AQ3810]
          Length = 231

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P +   L  +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKV---HAIWPDKMRTLTHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  ETHNSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTKPTAIILGSEKIGASEQAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|308047831|ref|YP_003911397.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307630021|gb|ADN74323.1| tRNA guanosine-2'-O-methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 235

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 9/157 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSPSESAVLAKSASGAL 184
            +R   L + L+ V+ PHN+ A++R+A A        +   +      + +   +A+G+ 
Sbjct: 14  DMRQPDLTICLEDVHKPHNLSAMIRTADAIGVPEVHAVFLGED-----NRLRGGTATGSQ 68

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           + +   R  ++ DA+ +M   G Q I  + S+              A+++G E  G+  +
Sbjct: 69  QWVKVNRHQSIGDAVARMREQGMQVIATNLSEKAVDFRSIDYTKPTAILMGQEKTGISQE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 129 ALALADHDVIVPMVGMVQSLNVSVASALLLYEAQRQR 165


>gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus]
          Length = 354

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 99/264 (37%), Gaps = 15/264 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----AR 80
            +   K M+SF+++ R       +   G   V   +         ++ +  AL      R
Sbjct: 70  QNPKVKLMRSFHKR-RTRDDGGKILAEGHRLVCDLIEGGLTPTL-VIVSPEALRASPGPR 127

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L           V   P + + +        QG+         P L      Q +++ D 
Sbjct: 128 LQAALETLSADVVAVAPAEVVQRCCDT-VTSQGVVALV---ERPVLPLPPTLQTVLICDG 183

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+G ++R+A     D ++ T       +    +++ GA   +P +R+ +  + ++
Sbjct: 184 IQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPSLRLESWQEVVE 243

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP----KTQETATSMAHLHM 256
            M + G +       ++            AL++GAE +GL      + +    +   + +
Sbjct: 244 LMRARGIRMYAADGGARLSHFDADWTSPSALVVGAEARGLSDAARLELESGGIAGVSVPL 303

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
            G +++LN + A A+ L   Q   
Sbjct: 304 EGGVESLNAAVAGAIVLGEAQRQR 327


>gi|126656950|ref|ZP_01728128.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
 gi|126621788|gb|EAZ92497.1| rRNA methylase SpoU [Cyanothece sp. CCY0110]
          Length = 220

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L ++ + V+ PHN+ AI+R+  A     +         E    ++ + G+ + +
Sbjct: 16  EKRQPDLTILTEDVHKPHNLSAIIRTCDAVGILDVHCINTTD--EFPTFSQVSQGSDKWV 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 N+   +  +    F       +D      +       A++LGAE  G+  +   
Sbjct: 74  FLHSHPNIKTGINHLKRQNFNIYAAHFTDQSLDYREIDYTQPTAILLGAEKWGVSEEAAN 133

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + M G++++LNVS AAAV L+  Q   
Sbjct: 134 LVDGHIIVPMLGMVQSLNVSVAAAVILFEAQRQR 167


>gi|317151947|ref|YP_004119995.1| TrmH family RNA methyltransferase, group 3 [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942198|gb|ADU61249.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 266

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 12/254 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDANLPH--PFPVK 94
           Q S    +   +++ G   V   L ++P+R  F           ++    L      P +
Sbjct: 15  QNSDQDKKDGKIYVVGNKPVRELLLDDPARVDFVAFRVGRHDKGVEEILELCRVAKVPYR 74

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIG 148
           +V  + +D +      HQG+A   A L    L  +  +       L++ LD V D  N+G
Sbjct: 75  SVSAKDLDFM--YRGNHQGVAARCAALSYVPLLTMLETAPDAPLPLIIALDQVQDTGNVG 132

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            + R+  A    G+I  +       A   +S++GAL  +P  +  NL  AL+   ++ + 
Sbjct: 133 VLARTLYALGGAGLIVCQHQGAYLGAGAVRSSAGALNKLPVAKAGNLAAALKDCANYDYT 192

Query: 209 TI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
                + +      +        L+LG E KG+RP   +       +       +LNV+ 
Sbjct: 193 LYYAQTGEGSLNAYEAELKTPAVLVLGNEEKGVRPGVAKLCHHSLSIPFRREFDSLNVAQ 252

Query: 268 AAAVALYITQNHFA 281
           A AV +        
Sbjct: 253 AGAVLVSEFSRRMG 266


>gi|15828775|ref|NP_326135.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089718|emb|CAC13477.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 250

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 115/284 (40%), Gaps = 39/284 (13%)

Query: 1   MN-LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           MN +IS K++EKI  LK     K R         Q FN+            + G H +  
Sbjct: 1   MNKVISSKENEKIKHLKKLQNKKYR---------QKFNE----------FLIEGDHLIDE 41

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL N      Q+ +TK          N  H F    +  + +  +       Q +A    
Sbjct: 42  ALKNNFE--CQIYSTK---------PNEKHDF---LITKEVLKHVSLLVNSEQKIAKVKI 87

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
              S     +     ++ L+++ DP NIG +LRSA++F+   II         +  + ++
Sbjct: 88  KETSNDFLNIDQKSNILFLNNLQDPTNIGTLLRSALSFNFKNIIYDNL--DIYNPKIIRA 145

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGK 238
           + GA+  + + +  N    L+ +    ++ IG    S    L Q   + KI LILG EG 
Sbjct: 146 SQGAIFALNFFKSKNHQKTLKYLQEKNYEIIGTFLHSDSTNLYQNSFDKKIVLILGNEGL 205

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+  +          + +    ++LNV+ A ++ +   +N  +K
Sbjct: 206 GIEKEILTLIDKNVIVPI--NFESLNVAIAGSIIMSYVENKGSK 247


>gi|255013118|ref|ZP_05285244.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|298373994|ref|ZP_06983952.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
 gi|301311793|ref|ZP_07217718.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
 gi|298268362|gb|EFI10017.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_19]
 gi|300830353|gb|EFK60998.1| RNA methylase, SpoU family [Bacteroides sp. 20_3]
          Length = 176

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   T +A + S    L++VLDHV   +N+G++ R++ AF  + I      +   
Sbjct: 4   LKVTELNRLTPEAFKESKKIPLIVVLDHVRSLNNVGSVFRTSDAFRVEAIYLCGITACPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKI 229
           +A + K+A GA E + +    +  +A+ K+   G+    +  ++    L+  Q  K  K 
Sbjct: 64  NAEIHKTALGAEETVDWEYFKDTPEAVDKLRQEGYTVCAVEQAEGSVMLDNLQLDKTKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A+++G E KG++    +       +   G   +LNVS    + ++      +
Sbjct: 124 AIVMGNEVKGVQQNVVDNCDICIEIPQYGTKHSLNVSVTTGIVIWDFFKQLS 175


>gi|224372518|ref|YP_002606890.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
 gi|223588486|gb|ACM92222.1| 23S rRNA methyltransferase [Nautilia profundicola AmH]
          Length = 221

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 12/225 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG   V   +      + +LL  K    +   + N    F +  +  +T  KI  + 
Sbjct: 1   MIVYGKRVVEYIIQKHGNIVKELLIAKKLDKK---ELNKLKQFKINFIDNKTAQKI-SRN 56

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG   +         +   N   +++LD V D  NIGAI R+A A   D +I T   
Sbjct: 57  GNHQGYFAKI-DFTPGEWEITGNK--IVILDGVTDMGNIGAITRTAYALGVDLLIITGIK 113

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                  + ++++GA   +  +   N+ D +  + + G+   G     +  +E     DK
Sbjct: 114 ELKW-PQVIRTSAGAALDMKILTYHNILDLINILKTKGYIIAGADMGGECKIEA----DK 168

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +ALILG EG+GL+ K +E    +  + M     +LNVS AA + +
Sbjct: 169 LALILGNEGEGLKKKVKEKLDKILSIEMKNGFDSLNVSVAAGILI 213


>gi|313668290|ref|YP_004048574.1| RNA methyltransferase [Neisseria lactamica ST-640]
 gi|313005752|emb|CBN87206.1| putative RNA methyltransferase [Neisseria lactamica 020-06]
          Length = 261

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 96/259 (37%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +   +    A    +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGKPLGVYI--PEAKMPSEEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P     +V    + KI         LAL    +  P    + +    +VLD V 
Sbjct: 66  KLMAVLPEDGFFSVSDGILKKISSLTCADDVLAL----IDIPDAGVLPDKGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  K  + + S  + ++  GA         ++L   L + 
Sbjct: 122 DPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADLEIWLARY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 EDRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      +
Sbjct: 241 LNVAMAATICLFEQMRQRS 259


>gi|254294115|ref|YP_003060138.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254042646|gb|ACT59441.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 275

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 94/255 (36%), Gaps = 7/255 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++  ++K +  +        G   +  AL    +  + L+ ++  + R D   
Sbjct: 13  SNPTIKLLRGLDRK-KVRNDTGLFLAEGARLIVDALKFGWKPKYVLVGSE-TIDRPDIQH 70

Query: 86  NLPHPFPV----KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
            +     +     T   + +  +  K+     +A       +         +  + L   
Sbjct: 71  VISQCAEIGARTLTTSSRILSAVSRKDNPQTIIAAFEQQTTTLEALETSGKKRFIALYEA 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ILR+A A   DG+I  ++     S    ++  GAL     + +++ T+    
Sbjct: 131 RDPGNLGTILRTADAAGIDGVILVEQCCDPFSVECVRATMGALFSNNIV-LASFTEFDNW 189

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                 +    S +     +Q   + K  +++G E  G+    +     +  + M G   
Sbjct: 190 RRKANIKMAAASVNGTMRHDQAEYSSKSVILMGNEQSGIPEAAENACDILIKIPMAGAAD 249

Query: 262 ALNVSNAAAVALYIT 276
           +LN++ A A+  Y  
Sbjct: 250 SLNLAQATAIMTYEV 264


>gi|269123340|ref|YP_003305917.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
 gi|268314666|gb|ACZ01040.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
          Length = 254

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 13/254 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++R YK ++  N K ++  +       G   +            +++  ++     +   
Sbjct: 9   DNRYYKLIKKLNDK-KYRDESGVFLAEGEKFLEE-----KNNFSKVIVKESKYMYYEEKY 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           N+     +  +  +  D I   +   QG+    +  LS   +   +   L++LD + DP 
Sbjct: 63  NISKYENLTILSDKLFDNI-STQNNSQGILFIYSKHLSNLSELSGD---LIILDAIQDPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG I+R+ VA +   +I TK      S  + ++  G + ++  I      + ++ +   
Sbjct: 119 NIGTIIRTLVAANYRTLILTKSSVDVYSPKVVRATMGGIFNVNIIY-EEKENIIKFLKEN 177

Query: 206 GFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G+  I   LS +S    E E+K DK A I G EG G+  +  E +   A + + G I++L
Sbjct: 178 GYNIISTALSKESIDYREVELKKDKNAYIFGNEGGGVSDEFLEISHQKAIIPIYGKIESL 237

Query: 264 NVSNAAAVALYITQ 277
           NVS A  + LY  +
Sbjct: 238 NVSIALGIFLYKMR 251


>gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
 gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
           44963]
          Length = 278

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 108/295 (36%), Gaps = 35/295 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LIS   + ++  L+  H                    +R   +     L G H + A 
Sbjct: 1   MTLISSTANPRVSKLQRLHT-------------------TRGRKKSGQCLLEGPHLLLAL 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFP--------VKTVPPQTIDKIVGKEAVHQ 112
           L+     + ++      + R      L             +  V  + ++ I   +   Q
Sbjct: 42  LDAGMVPL-EVYYQPEVMQRQAETRLLLERVKNAELGEQQLFEVSERVMEAISDVQ-TSQ 99

Query: 113 GLA--LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           G+   ++ A   +  +   R       L++LD + DP N+G I+R+A+A   + ++ T  
Sbjct: 100 GIVCVMDLAAFEAAAVTRRRAPASRPALLILDDLADPGNMGTIMRTALAADVERVLLTPN 159

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSDSKKPLEQEIKN 226
                ++ + +SA+GA   +P     N  +  +++ +    + +   + S          
Sbjct: 160 CVDCFNSKVIRSAAGAHLFLPVESNINWDEIQERVRAHCQERVLMAEAHSPNVYFDLDLV 219

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ALI+G E  G     +  AT    +     I++LN + AA + LY      +
Sbjct: 220 APFALIIGNEAHGPSQSARALATIPVAIPQAAGIESLNAAMAAGILLYEAVRQRS 274


>gi|265752733|ref|ZP_06088302.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
 gi|263235919|gb|EEZ21414.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_33FAA]
          Length = 178

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   T+D  + +    L +VLD V   HNIG++ R++ AF  D I      +   
Sbjct: 4   LKITELNRLTVDEFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKI 229
              + K+A GA   + +    N  DA+Q++H  GF  + +   +    L+  +   + K 
Sbjct: 64  HPEMHKTALGAENSVEWRYKKNTLDAVQELHDQGFTVLAIEQVEGSTLLDKLELDADKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A+++G E KG++ +          +   G   +LNVS    + ++   N   K
Sbjct: 124 AIVMGNEVKGVQQEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEFVNKLMK 176


>gi|218130161|ref|ZP_03458965.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
 gi|317476654|ref|ZP_07935898.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|217987665|gb|EEC53993.1| hypothetical protein BACEGG_01749 [Bacteroides eggerthii DSM 20697]
 gi|316907117|gb|EFV28827.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 270

 Score =  163 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 6/235 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     ++R               +S A++     +  L   K+               P
Sbjct: 20  LTEAQLRNRIEPSKGIFIAESPKVISVAMDAGYEPLALLCEQKHITGDAATIIERSGNIP 79

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P      +  R ++ ++V+D V D  NIGAI R
Sbjct: 80  VYTGERELLSTLTGYTLTRGVLCAMRRPKPRCIEEVCRKARRIVVVDGVVDTTNIGAIFR 139

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T       +    + + G++  +P+   + L   L K++  GF+T  +
Sbjct: 140 SAAALGIDAVLLTPTSCDPLNRRAVRVSMGSVFLVPW---TWLDGPLGKLNDLGFRTAAM 196

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  D    ++  I     K+A+++G EG GL  KT   A  +  + M   + +LN
Sbjct: 197 ALTDDSISIDDPILANEPKLAIVMGTEGDGLSHKTIAEADYVVRIPMSHGVDSLN 251


>gi|332295579|ref|YP_004437502.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
           narugense DSM 14796]
 gi|332178682|gb|AEE14371.1| RNA methyltransferase, TrmH family, group 3 [Thermodesulfobium
           narugense DSM 14796]
          Length = 244

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 7/237 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            F+ G+H V  A+        QLL  +N       +    +      V  + + +I    
Sbjct: 4   DFVIGIHPVINAIKEGIE-FKQLLIARNKKLPFIEEFLQKNKDKRSLVVYKNLSEIERLF 62

Query: 109 AVHQGLALETAPLLSPT-----LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS-CDGI 162
              QG+ +              L+ +++ ++L+    + D  NIGA+ R+A A     GI
Sbjct: 63  PNSQGIVMFIKRFEYADEEETVLNVIKSKKVLLAFSGIMDVRNIGAVARTAQASGLVGGI 122

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I  K  S   +    K+++G+L  IP +R+SNL   ++ +   G   IG+        + 
Sbjct: 123 ILPKHRSLDITPAAIKASTGSLLSIPVVRLSNLRYFVKDLKRRGVSVIGVEKRGSVRYDM 182

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  I  + G+E K L            ++ M     +LN+S A+++ LY     
Sbjct: 183 LKYDLPICCVFGSESKSLSDVFLRDLDQNVYIPMSNDFNSLNLSVASSILLYEIFRQ 239


>gi|163802263|ref|ZP_02196158.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
 gi|159174068|gb|EDP58878.1| tRNA guanosine-2'-O-methyltransferase [Vibrio sp. AND4]
          Length = 227

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P +   LA +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKV---HAIWPDKMRTLAHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ S G Q +  + SD+             A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIDTAISELKSQGMQVLVTNLSDTAVDFRDIDYTKPTAIILGSEKVGASDRAKKLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIIPMIGMVQSLNVSVASAVILYEAQRQR 164


>gi|121594908|ref|YP_986804.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
 gi|120606988|gb|ABM42728.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
          Length = 260

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 12/255 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLD 82
            R++   K+++  +Q S    +   ++L G H  SAAL    +    + +      A  +
Sbjct: 10  SRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAVAVFSESFWRQAPAE 69

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
           +         +  V    I  +     +  G  L       P  + +      +VLD + 
Sbjct: 70  YARAAIKNVVIADVLWSDISALESPAPM--GFVL-----PLPEAEGLDGRMPTVVLDRLQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    +   K  +   S  + ++  GA   +  +      D + ++
Sbjct: 123 DAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGAHFALRLVEGLAPAD-IDRL 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  SS     L +         I+G EG+G+ P  Q+ A     +  PG  ++
Sbjct: 182 E---VPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEES 238

Query: 263 LNVSNAAAVALYITQ 277
           LNV  AAA+ L+ + 
Sbjct: 239 LNVGAAAAICLHASA 253


>gi|317967917|ref|ZP_07969307.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0205]
          Length = 238

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 11/175 (6%)

Query: 116 LETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            +  PLL    + +      R   L +V++ V+ PHN+ AILR+  A             
Sbjct: 5   AKPMPLLPRRFERLKSVLNHRMGDLTVVMEQVDKPHNLSAILRTCDAVGALEAHVVSL-- 62

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDK 228
           P        +A G+ + +P     ++   LQ +   GF+  G                  
Sbjct: 63  PGRPRTFNNTAKGSQKWVPLHPHPSIEGCLQGLKDKGFRIYGTHLSVDAVDYRDCDFTGP 122

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
              ++GAE  G+  +          + M G++++LNVS AAA  L+    Q   A
Sbjct: 123 SCFLMGAEKWGMSEEALALVDQPLFIPMTGMVQSLNVSVAAATLLFEALRQRQRA 177


>gi|74316633|ref|YP_314373.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
 gi|74056128|gb|AAZ96568.1| tRNA/rRNA methyltransferase [Thiobacillus denitrificans ATCC 25259]
          Length = 260

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/261 (25%), Positives = 111/261 (42%), Gaps = 8/261 (3%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A   R++  +K+++   + SR   +     L G H ++A L         + A     AR
Sbjct: 5   AIRSRDNPIFKRLKKLAESSRARREARMTLLDGEHLLAAYLAAGGTPHTLVRAESCDAAR 64

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L   A+      V  V P  +   +   A   G+  E A L   T  A  +  L++VL+ 
Sbjct: 65  LAAVADCRQAKTV--VVPDALFAELAPVATPTGVLAEAAWL---TPQAPVDLALVVVLED 119

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+GA+LR+A A      + +K    + S    +   GA   +P    ++    L+
Sbjct: 120 IQDPGNLGAMLRTAAAAGATLAVLSKGCHDAWSPKALRGGQGAQFVLPMQLAADPGSWLR 179

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                   ++ L+ ++   L         AL++G EG GL   T   AT+ A + MPG +
Sbjct: 180 DFSG---TSVALAPEAAHDLYTLDYTGPTALVVGNEGAGLSAATLAAATTRARIPMPGRV 236

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN S A AVA++       
Sbjct: 237 ESLNASAALAVAVFEALRQRG 257


>gi|32475415|ref|NP_868409.1| rRNA methylase [Rhodopirellula baltica SH 1]
 gi|32445956|emb|CAD78687.1| putative rRNA methylase [Rhodopirellula baltica SH 1]
          Length = 302

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 11/245 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
           RH    +     G   V   L +    +  +L      ++  +   +P   PV  +  + 
Sbjct: 53  RHRETDDGFIAEGSLVVGRLLQSD-LGVQSVLIHTGRESK--YLPLIPDSVPVYLIDREL 109

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAF 157
             ++ G +  H+G+           L+  R+S    L + L  ++DP N+G++LRSA A 
Sbjct: 110 GKELAGYD-FHRGVLAHGFSPAIEPLEKFRDSPQSSLALALVGLSDPENVGSLLRSAAAL 168

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               I+         +  + + +  ++    + R  N    L+ + + G  +I    D  
Sbjct: 169 GVRDILLGPHTISPMTRRVIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLLDDT 228

Query: 218 K----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 L   I++ +  L++G E  GL  +  E AT  + L M     +LNV  A+A+ L
Sbjct: 229 AIPLIDLSNAIQSKRRILMVGNEANGLPREIAEAATHRSTLPMRNDTDSLNVGVASAIFL 288

Query: 274 YITQN 278
           Y    
Sbjct: 289 YELTR 293


>gi|313206869|ref|YP_004046046.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312446185|gb|ADQ82540.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315023943|gb|EFT36945.1| putative rRNA methylase [Riemerella anatipestifer RA-YM]
 gi|325335693|gb|ADZ11967.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 257

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 9/256 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +      +R   +     + GV     AL   +  + +    ++  +     A
Sbjct: 9   QNDKIKHLNRLATDNRFRKKQGVFIVEGVQENQRALTFGNEAL-EFYICESIFS-----A 62

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            LP    +  +  +   KI  +      + +   P           +  +++++ +  P 
Sbjct: 63  ELPTNAKIYYITDKIYQKIAYRGTTEGIIGVYKTPQNHLDHFIPSENASVIIVESIEKPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILRS  AF  D +I T       +  + +S+ G L  +   +  N    L  +   
Sbjct: 123 NLGAILRSCEAFGIDALIVTDPKVDFYNPNVIRSSVGCLFGMNIFQADN-QSTLAFLKKH 181

Query: 206 GFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            F+      S+  + + Q+    K ALI G E  G+    +  A     + M G I +LN
Sbjct: 182 HFKVYTTFMSEDAQLIHQKDFKTKTALIFGTEHSGISDFWKGKA-ENILVPMAGTIDSLN 240

Query: 265 VSNAAAVALYITQNHF 280
           +SNA AV+ Y      
Sbjct: 241 LSNAVAVSCYEILRQR 256


>gi|67923985|ref|ZP_00517438.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67854160|gb|EAM49466.1| tRNA (guanosine-2'-O-)-methyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 216

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L ++ + V+ PHN+ AI+R+  A     + +       E    ++ + G+ +  
Sbjct: 16  EKRQPDLTVLTEDVHKPHNLSAIIRTCDAVGILDVHSINTTD--EFPTFSQVSQGSDKWT 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++  A+  + S          ++              A++LGAE  G+  +   
Sbjct: 74  FLHTHPDIKTAITYLKSKKINIYAAHFTEKSLDYRDIDYTQPTAILLGAEKWGVSEEAAN 133

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + M G++++LNVS AAAV L+  Q   
Sbjct: 134 LVDGNIIIPMLGMVQSLNVSVAAAVILFEAQRQR 167


>gi|227327134|ref|ZP_03831158.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 230

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHN+ A++R+A A     I      S      L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNVSAVIRTADAVGVHEIHAIWPTS--RMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                N+ DA+  + + G Q +  + S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRNIGDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|298571681|gb|ADI87833.1| hypothetical protein AKSOIL_0325 [uncultured bacterium Ak20-3]
          Length = 250

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 100/248 (40%), Gaps = 16/248 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
             S      + G+  ++  + +    I ++ +T     ++          PVK V     
Sbjct: 4   KPSTSNEFTVEGMSALAEFVRHKPSSIKRIFSTPKYKDKVTALVG-KLDIPVKIVE---- 58

Query: 102 DKIVGKEAVHQGLALETA------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           D+    E     +             L   L   +  QL++ LDH+ DP N+GAI RSA 
Sbjct: 59  DRPSSDERPTSPVYASVEIHYQSFSNLLSILGKSKQDQLVLALDHITDPRNLGAIARSAA 118

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F    I+  K      +     ++ GA      + + NL  AL+K+   GF  I   + 
Sbjct: 119 FFGVKYILIPKMRQVLLTPASVATSQGAFAFSELVLVPNLGQALEKLKEEGFWVICADAK 178

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALY 274
            +K  +   +  K+ L+LG+E KG+    ++ +  +  +      + +LNVS AA + L 
Sbjct: 179 GEKFEKVIGEYQKVVLLLGSEDKGVSELLKKRSDRVVSISTDTQTLDSLNVSVAAGILL- 237

Query: 275 ITQNHFAK 282
              N FAK
Sbjct: 238 ---NGFAK 242


>gi|163792968|ref|ZP_02186944.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159181614|gb|EDP66126.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 270

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 108/255 (42%), Gaps = 9/255 (3%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP---SRKIFQLLATKNALARLDW 83
           +++ K++++   K +  SQ       G+  V  A+      SR +    A+ + L R   
Sbjct: 14  NQEIKELRALETK-KGRSQQNAFVSEGLRHVVEAVRRGWRVSRLVLSESASSSELLREAI 72

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL--MVLDHV 141
                    V TV  + + +I  ++   Q +           L+AV  +  +  + L+ +
Sbjct: 73  QGCEASGGRVLTVTDELMTRIARRD-NAQSVIA-VIEQRWGDLEAVIAAPRVTWLALEGI 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G+I+RSA AF+  G++         S    +++ G++ ++P IR+      L  
Sbjct: 131 RDPGNLGSIIRSADAFAVAGVLLIGNTVDPFSTEAVRASMGSIVNVPLIRLDE-AAYLDW 189

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              W  +T+G    ++   E   +     L++G E  GL  +   T   +  + M     
Sbjct: 190 HRGWTGRTVGTHLRAELQPESVERGSATLLVMGNEQSGLPARIAATCNQLVRIPMRDGAD 249

Query: 262 ALNVSNAAAVALYIT 276
           +LN++ A A+ LY  
Sbjct: 250 SLNLAAATAIMLYAV 264


>gi|251791702|ref|YP_003006423.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
 gi|247540323|gb|ACT08944.1| tRNA guanosine-2'-O-methyltransferase [Dickeya zeae Ech1591]
          Length = 230

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +      S      L  +A+G+   +  
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAVWPTS--RMKTLVSTAAGSNSWVQV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                + DA+  +   G Q +  +                  ++LG E  G+       A
Sbjct: 74  KTHRTIQDAVGHLKMQGMQILATNLSAGAVDFRDVDYTRPTCILLGQEKTGISADALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|261823688|ref|YP_003261794.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261607701|gb|ACX90187.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium wasabiae
           WPP163]
          Length = 230

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHN+ A++R+A A     +      S      L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNVSAVIRTADAVGVHQVHAIWPTS--RMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 + DA+  + + G Q +  + S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRTIRDAVGHLKAEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITDEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|197286694|ref|YP_002152566.1| tRNA guanosine-2'-O-methyltransferase [Proteus mirabilis HI4320]
 gi|227355114|ref|ZP_03839525.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|194684181|emb|CAR45642.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis HI4320]
 gi|227164901|gb|EEI49748.1| tRNA (guanosine-2'-O-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 239

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A+R   L + L+ V+  HN+ A++R+A A     I       P E   +L   A+G+   
Sbjct: 14  AMRQPDLTVCLEEVHKSHNVAAVIRTADAVGIPKI---HAIWPEEKMRMLVSPAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+    + G Q +    SD      +        +I+G E  G+ P+  
Sbjct: 71  VNVNTHPTIADAINTFRAQGMQVLATHLSDKAVDFREIDYTQPTCIIMGQEKTGISPEAI 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ALADQDIIVPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|167771637|ref|ZP_02443690.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
           17241]
 gi|167666277|gb|EDS10407.1| hypothetical protein ANACOL_03009 [Anaerotruncus colihominis DSM
           17241]
          Length = 264

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 12/262 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALA 79
            R +   K+  +     R   +       GV     A          L  T++       
Sbjct: 8   SRENPAVKQYTALASSRRRRREDGRFTTEGVKLTLEAFTAGYTP-EALFLTQDLTDSVRR 66

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQLLMV 137
           RL   A          + P    K+ G  +     G+ +       P    + ++   ++
Sbjct: 67  RLMPVAAACRRL--YEISPSVAAKLAGAVSPQGVFGVFMMLDNRTQPV--KIGSNGKYLL 122

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  + DP N+G ILR+A AF  DG+I +       +  + +++ G +         +L+ 
Sbjct: 123 LSSLQDPGNVGTILRTAAAFGTDGVILSADCPDLYAPKVLRASMGGVFRARACVSDDLSA 182

Query: 198 ALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           ++  + + G      + ++    L     +   A+++G EG G+ P+          + M
Sbjct: 183 SIAALRAAGVPVWAAMPAEGSVSLRDISLHGGGAVVVGNEGGGIAPELAALCDGALTIPM 242

Query: 257 PGIIKALNVSNAAAVALYITQN 278
               ++LN + AA V L+    
Sbjct: 243 EPGCESLNAAMAAGVILWEMYR 264


>gi|33866213|ref|NP_897772.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
 gi|33639188|emb|CAE08196.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 8102]
          Length = 229

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC--DGIITTKRYSPSESAVLAKSASGALEHI 187
           R + L ++L+HV  PHN+ AILRS  A       I++ +      +     +A G+ + +
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHIVSLQGR----TRTFNSTAQGSQKWV 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P      +  A+  +   GF+  G       K           A +LGAE  GL  + ++
Sbjct: 74  PLNDHPTIETAIGSLKDRGFRVYGTHLGVEAKDYRDCDFTGPTAFVLGAEKWGLTDRARD 133

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + M G++++LNVS A A  L+      
Sbjct: 134 LMDEALFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|327540299|gb|EGF26885.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopirellula baltica WH47]
          Length = 275

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 103/256 (40%), Gaps = 13/256 (5%)

Query: 38  QKSRHTSQPENLFLYG----VHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV 93
           ++SR       + + G    +  + A L   +    +   +++       +  +     +
Sbjct: 19  RRSRKRRAAGVVLVDGPRESLRAIEAGLKLTAFYEIEPKPSESVGPPDMPEQAVARQHAI 78

Query: 94  -----KTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVR-NSQLLMVLDHVNDPH 145
                + V  +   KI    +  + +A   AP   L   LD    N  L++VLD V  P 
Sbjct: 79  DSGVHRWVTSEVFRKIAYTASTDRCVAEFVAPDDSLEQLLDRSSWNDGLILVLDRVEKPG 138

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA+ RSA A     ++ +   S   +    + + GA+  +P    S  +     + + 
Sbjct: 139 NLGAVFRSADAAGVSAVLLSDCPSDRFNPNAIRGSLGAVFTVPSASGSE-SQMEAFLKTH 197

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G++   +  +  +PL       K+A++LG+E  GL  +    +     L M G + +LNV
Sbjct: 198 GYRVAAMRVEGSRPLFDSDLRGKVAVVLGSEADGLADRWAGDSIDPVALPMAGHVDSLNV 257

Query: 266 SNAAAVALYITQNHFA 281
           S +AA+  +      +
Sbjct: 258 SVSAAIVAFEAVRQRS 273


>gi|297180013|gb|ADI16238.1| rRNA methylases [uncultured bacterium HF0010_16H03]
          Length = 241

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 10/242 (4%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPV-KTVP---P 98
           ++ EN    G H++ + + +   KI ++    N    R++    +     +         
Sbjct: 2   TKKENDLRIGFHSIKSIVEHNPHKIKKISLPANRNDLRINQLITVLDQNSINYEFSNKVK 61

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           Q  + IV  +       L    L       +    L+++LD+V DP N+GA +R A    
Sbjct: 62  QEPEAIVSNDP-----ELNFKDLKKYLNSNLVIQPLILILDNVIDPRNLGACIRCAAVAG 116

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +I  K      +AV  K + G  E I    ++NL + L+ ++       GLS  + +
Sbjct: 117 VDAMIINKHQCAPLNAVAHKVSVGGAEVIKLFHVTNLINCLKFLNEKNINIYGLSEHADE 176

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +       ALI+GAE  G+R KT E      +L    + K+ NVS A  + L     
Sbjct: 177 SYHECNFKFATALIMGAEESGIREKTLERCDHKINLSGNKLFKSFNVSVATGIILSEANR 236

Query: 279 HF 280
             
Sbjct: 237 QR 238


>gi|50119000|ref|YP_048167.1| tRNA guanosine-2'-O-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609526|emb|CAG72959.1| putative tRNA (guanosine-2'-O)-methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 230

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            R   L + ++ V+ PHNI A++R+A A     +      S      L  SA+G+   + 
Sbjct: 15  CRQPDLTICMEQVHKPHNISAVIRTADAVGVHQVHAIWPTS--RMKTLVSSAAGSNSWVQ 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 + DA+  + + G Q +  + S+      +        ++LG E  G+  +  + 
Sbjct: 73  VKTHRTIQDAVGHLKNEGMQVLATNLSEHAVDFREIDYTRPTCILLGQEKTGITAEALKL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 133 ADRDIIIPMTGMVQSLNVSVASALILYEAQRQR 165


>gi|157412835|ref|YP_001483701.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387410|gb|ABV50115.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 223

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186
             R   L ++++ VN PHN+ AILR+  A    +    +K  +         +A G+ + 
Sbjct: 16  DCRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAV---KTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N   A+  + + GF+  G + +SK         +     +LGAE  GL  +  
Sbjct: 73  VKLNNHENTIKAISDLKNKGFKLYGTTLNSKSVDYRNFDYSQNTCFVLGAEKWGLSNELI 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M G++++LNVS AA++ L+      
Sbjct: 133 SMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167


>gi|78778803|ref|YP_396915.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712302|gb|ABB49479.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 223

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186
             R   L ++++ VN PHN+ AILR+  A    +    +K  +         +A G+ + 
Sbjct: 16  DCRMQNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAV---KTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N   A+  + + GF+  G + +S+         +     +LGAE  GL  +  
Sbjct: 73  VKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSKEII 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M G++++LNVS AA++ L+      
Sbjct: 133 SMVDQSIFIPMRGMVQSLNVSVAASILLFEAIRQR 167


>gi|86130703|ref|ZP_01049303.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85819378|gb|EAQ40537.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 261

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 98/256 (38%), Gaps = 3/256 (1%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K++    +KSR   +     + G   +  A+      I ++   +  +A    + 
Sbjct: 9   QNPTVKRLLQLQEKSRTRKKEGGFIIEGKREIELAI-AGGYTITEVYYDEQLIAPSSVEE 67

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
            +     + ++  +   K+  +      +A   A   + +   +  + L++V +    P 
Sbjct: 68  LVGTKISLTSLATEVYKKVAYRGGTEGVIAFAKAKKTTLSELQLPVNPLILVTEAPEKPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR+A A + D +I     +   +  + +S+ G +         +  + +  +   
Sbjct: 128 NIGALLRTADAAAVDAVIIANPKTDLYNPNIIRSSVGCVFTTQIA-TGSTEEVISFLQEK 186

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                            +      A+++G E  GL P+ + T  +   + M G I ++NV
Sbjct: 187 DVAIYSAILQKAVDYATQAYTGGSAIVVGTEATGLSPEWR-TVGTNIKIPMRGKIDSMNV 245

Query: 266 SNAAAVALYITQNHFA 281
           S AA + ++  +   +
Sbjct: 246 SVAAGILIFEARRQRS 261


>gi|218768195|ref|YP_002342707.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
 gi|121052203|emb|CAM08526.1| putative RNA methyltransferase [Neisseria meningitidis Z2491]
 gi|316985032|gb|EFV63985.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76]
 gi|325134334|gb|EGC56980.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M13399]
 gi|325140360|gb|EGC62882.1| RNA methyltransferase, TrmH family [Neisseria meningitidis CU385]
 gi|325144441|gb|EGC66741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M01-240013]
 gi|325200182|gb|ADY95637.1| RNA methyltransferase, TrmH family [Neisseria meningitidis H44/76]
 gi|325206036|gb|ADZ01489.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
           M04-240196]
          Length = 261

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 95/259 (36%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +    +   +    A    +   
Sbjct: 8   NNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGMPVGVYI--PEAKMPSEEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P     +V    + KI         LAL    +  P   A+      +VLD V 
Sbjct: 66  KLTAVLPEDGFFSVSDGILKKISSLTCADDVLAL----IDIPDAGALPAGGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     +I  K  + + S  + ++  GA         ++L   L + 
Sbjct: 122 DPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGAHFLSEIYPQADLEIWLVRY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +  A + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      A
Sbjct: 241 LNVAMAATICLFEQMRQRA 259


>gi|332139565|ref|YP_004425303.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549587|gb|AEA96305.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 235

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK--SASGALE 185
             R + L + L++V+ PHN+ AI+R+  A     +     ++  E     +  +A G+ +
Sbjct: 14  EKRQTDLTVCLENVHKPHNVSAIVRTCDAVGIHRV-----HTVWEKKYQFRRGTAMGSQQ 68

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +       + DA+ ++   G Q +    SD+             A++ G E  G   + 
Sbjct: 69  WVRQTNHDGINDAMAELKGQGMQVLVTHLSDTAVDFRDVDYTKPTAILFGQEKYGATDEA 128

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  A     + M G++++LNVS AAA+ LY  Q   
Sbjct: 129 KALADQDIVIPMMGMVQSLNVSVAAALVLYEAQRQR 164


>gi|239907184|ref|YP_002953925.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239797050|dbj|BAH76039.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 196

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIP 188
           R + L +V+++++DPHN+ AILRS  AF    +     Y+ +    L K +SG A + + 
Sbjct: 20  RQTDLTLVINNIHDPHNVSAILRSCDAFGIHRVHLL--YTDTAFPALGKKSSGSAKKWVE 77

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R  +       +   GF+ +  S +++  PL++     K A+ILG E  G+       
Sbjct: 78  TVRHKDAASLAAALKGQGFRLVATSFTETAVPLQKWDLTTKTAIILGNEHSGVDEDLAPH 137

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                ++ M G++++LNVS AAAV LY      
Sbjct: 138 VDGALYIPMMGMVQSLNVSVAAAVILYEGFRQL 170


>gi|117621457|ref|YP_854563.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562864|gb|ABK39812.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 253

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK---SASGAL 184
           A R   L + ++ V+ PHN+ AI+R+A A     +     ++      + K   +A G+ 
Sbjct: 24  AQRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRV-----HAVWPKTWIHKRKGTARGSQ 78

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +      ++  A+ ++ + G Q +    SDS             A+++G E  G+  +
Sbjct: 79  NWVDVKLHPDIGSAVAELKASGMQILATHLSDSSVDFRAIDYTKPTAILVGQEKHGIGEE 138

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS AAA  LY  Q   
Sbjct: 139 ALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 175


>gi|126695780|ref|YP_001090666.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542823|gb|ABO17065.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 223

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186
             R   L ++++ VN PHN+ AILR+  A    +    +K  +         +A G+ + 
Sbjct: 16  DCRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAV---KTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N   A+  + + GF+  G + +S+         +     +LGAE  GL  + +
Sbjct: 73  VKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNELK 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M G++++LNVS AA++ L+      
Sbjct: 133 SMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167


>gi|145594428|ref|YP_001158725.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145303765|gb|ABP54347.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 314

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 92/242 (38%), Gaps = 9/242 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTI 101
                    G   V  AL  P   + +L  T  AL R    A        PV       +
Sbjct: 37  EATGRFLAEGPQAVREALARPG-TVLELFGTPAALDRYRDLAAQAAAADLPVSEATDAAL 95

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             +  +    QGL      L  P   A+ R  +L+ VL  + DP N G +LR+A A    
Sbjct: 96  AGLA-ETVAPQGLIAVCQHLDLPLATALARAPRLVTVLADIRDPGNAGTVLRTADAAGAQ 154

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++         +  + ++++G+L H+  +R  +    +  + + G   +  +      L
Sbjct: 155 AVVFAGTAVDPYNGKVVRASAGSLFHVDVVRAPDPLQVIADLRTAGLAVLATTGYGADDL 214

Query: 221 EQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +            A + G+E  GL  +    A +   + + G  ++LN++ AAAV LY +
Sbjct: 215 DDLADAGRLAAPTAWVFGSEAHGLPVELTAAAEARVRVPLHGRAESLNLAAAAAVCLYAS 274

Query: 277 QN 278
             
Sbjct: 275 AR 276


>gi|261414903|ref|YP_003248586.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371359|gb|ACX74104.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302325885|gb|ADL25086.1| RNA methyltransferase, TrmH family, group 3 [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 371

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 16/239 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           G+  V   LN    ++ ++L         L  L   A   H   V+ V  + +D      
Sbjct: 131 GIKEVEELLNKNPLQVHRVLFMHKSGNPKLYELQKLAKRAH-VHVQQVDSKILDSYARP- 188

Query: 109 AVHQGLALETAPLLSPTLDAVRN---------SQLLMVLDHVNDPHNIGAILRSAVAFSC 159
             H  +AL     L   +D              +L+ V  ++ DP N+GA +RS++A   
Sbjct: 189 -NHGVVALMNEKELLNWMDVREEFFKARDTGEKKLIAVATNIEDPRNLGACIRSSLALGV 247

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D ++   +     +  +A++++GALE +   R  NL  A+ ++   G+Q +GL +D++  
Sbjct: 248 DILLLPAKGMCGITPSVARTSAGALEKLRICRPDNLEGAIGELKMAGYQILGLDADTETN 307

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L      D + L +G E  GL P  ++   ++  + M     + N S A ++ LY    
Sbjct: 308 LAGFDFADHVVLAVGGEDVGLPPFIKKQCDAVLRIPMKPEAHSYNASVALSLGLYEYAR 366


>gi|260771994|ref|ZP_05880911.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
           CIP 69.14]
 gi|260612861|gb|EEX38063.1| tRNA (Guanosine18-2'-O-)-methyltransferase [Vibrio metschnikovii
           CIP 69.14]
          Length = 228

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SA 174
           LE    +   L A R + L + L+ V+ P+N+ A++R+A A     I       P+E   
Sbjct: 3   LERYQRIQDVLKA-RQTDLTVCLEEVHKPNNVSAVIRTADAVGLHQI---HAVWPNEQMR 58

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
            L+ +++GA   +     ++  +A+  +   G Q +  + S+              A+I 
Sbjct: 59  TLSHTSAGARNWVEVQTHNSTLEAVSHLKETGMQILVTNLSEHAIDFRAIDYTQPTAIIF 118

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G+E  G+ P+  + A     + M G++++LNVS A+A+ LY  Q    +
Sbjct: 119 GSEKSGISPQALQLADHDIVIPMVGMVQSLNVSVASALILYEAQRQRQQ 167


>gi|325285564|ref|YP_004261354.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324321018|gb|ADY28483.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 241

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 93/243 (38%), Gaps = 18/243 (7%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q+ ++ ++ +   + G+ TV   L N   K + +  T NA+          + F  + + 
Sbjct: 14  QQKKYRTENKLFVVEGIKTVKE-LVNAKVKPYAIYTTSNAVLE-------DNAFKCELIS 65

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              + KI   +  +  LA+   P     ++       L+ +D V DP N+G I+R    F
Sbjct: 66  ETDLKKISALKTPNNILAVFYQPKTKEIIED----NWLVAVDDVRDPGNLGTIIRLCDWF 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               +  +K+     +    ++  G+L  +  +      D    +        G   D K
Sbjct: 122 GVANLFCSKQTVDCYNPKTIQATMGSLARVNIVYG----DLEAFLKQTNLPVYGAFMDGK 177

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYI 275
              +++       L++G E  G+    +E  T    +   G    ++LNV+ A A+ L  
Sbjct: 178 NVYKEDFTAQSGVLVMGNEANGVSKTVEELITKKISIPQFGNKTTESLNVATATAILLNE 237

Query: 276 TQN 278
            + 
Sbjct: 238 IRR 240


>gi|198435468|ref|XP_002131824.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Ciona intestinalis]
          Length = 326

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 45/314 (14%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTS-------QPENLFLYGV 54
           +LIS  +       KDS   K+ +  R  K   + N K+RH            N FLYG 
Sbjct: 10  SLISSCRHILRKYGKDSKPIKISKQKR--KTNLNHNTKARHQRFDKIETSDFGNEFLYGR 67

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANL--------PHPFPVKTVPPQTIDKIVG 106
              + AL +  R IF++        +   D  +            P++ V    + +I  
Sbjct: 68  SVCNLALLSSRRPIFKMFINSKWEVQEPEDPRVQTSLKEAEERNIPIEFVSVSDLFEIT- 126

Query: 107 KEAVHQGLALETA-----PLLSPTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   HQG+ LE       PL   T+       +    + ++L  + DP N+G ILR+   
Sbjct: 127 QGFPHQGICLEVGQLPVIPLTQDTITSLIHHKLEQCPVWVLLYDIIDPMNVGNILRTCHF 186

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--- 213
                +I T + +P  S+   K++SGA E +    +   T  +Q M    ++ +G     
Sbjct: 187 LGVHAVIMTPQCAP-LSSSACKASSGATEIMQIYSVRKPTQFIQDMSEKNWEILGTDIFR 245

Query: 214 SDSKK--PLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHL-HMPGIIK----A- 262
            D+    P+   ++        LILG+EG G+    +E  T +  +  +    +    + 
Sbjct: 246 EDNNTHCPVLDVVEHKVTKPSLLILGSEGSGIPSDVKEICTKLLTIKPLKTNTENPQLSV 305

Query: 263 --LNVSNAAAVALY 274
             LNVS A A+ L+
Sbjct: 306 PCLNVSAATAIILH 319


>gi|271502622|ref|YP_003335648.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
 gi|270346177|gb|ACZ78942.1| tRNA guanosine-2'-O-methyltransferase [Dickeya dadantii Ech586]
          Length = 230

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +      S      L  +A+G+   +  
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAVWPTS--RMKTLVSTAAGSNSWVQV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                + DA + + + G Q +  +  +               ++LG E  G+  +    A
Sbjct: 74  KTHRTIQDAARHLKTQGMQILATNLSADAVDFRDVDYTRPTCILLGQEKTGISGEALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DQDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|254527012|ref|ZP_05139064.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538436|gb|EEE40889.1| tRNA guanosine-2'-O-methyltransferase [Prochlorococcus marinus str.
           MIT 9202]
          Length = 223

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186
             R   L ++++ VN PHN+ AILR+  A    +    +K  +         +A G+ + 
Sbjct: 16  DCRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAV---KTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N   A+  + + GF+  G + +S+         +     +LGAE  GL  +  
Sbjct: 73  VKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNELI 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M G++++LNVS AA++ L+      
Sbjct: 133 SMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167


>gi|123968010|ref|YP_001008868.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
 gi|123198120|gb|ABM69761.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
          Length = 223

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186
             R   L ++++ VN PHN+ AILR+  A    +    +K  +         +A G+ + 
Sbjct: 16  DCRMKNLTVLVEDVNKPHNLSAILRTCDAAGVFEANFISKTNAV---KTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N   A+  + + GF+  G + +S+         +     +LGAE  GL  +  
Sbjct: 73  VKLNNHENTITAISDLKNKGFKLYGTTLNSESVDYRNFDYSQNTCFVLGAEKWGLSNELI 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M G++++LNVS AA++ L+      
Sbjct: 133 SMVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 167


>gi|289672601|ref|ZP_06493491.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
          Length = 129

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 62/121 (51%)

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + +++  L
Sbjct: 1   AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVEL 60

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+      
Sbjct: 61  YQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQR 120

Query: 281 A 281
           +
Sbjct: 121 S 121


>gi|307128795|ref|YP_003880811.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
 gi|306526324|gb|ADM96254.1| tRNA (Guanosine-2'-O-)-methyltransferase [Dickeya dadantii 3937]
          Length = 230

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++ V+ PHN+ A++R+A A     +     +  +    L  +A+G+   +  
Sbjct: 16  RQPDLTVCMEQVHKPHNVSAVIRTADAVGVHQVHAV--WPTNRMRTLVSTAAGSNSWVQV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                + DA+  + + G Q +  +  +      +        ++LG E  G+       A
Sbjct: 74  ETHRTVQDAVGHLKTQGMQILATNLSASAVDFREVDYTRPTCILLGQEKTGITADALALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ LY  Q   
Sbjct: 134 DQDIIIPMVGMVQSLNVSVASALILYEAQRQR 165


>gi|222110441|ref|YP_002552705.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
 gi|221729885|gb|ACM32705.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
          Length = 260

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 99/255 (38%), Gaps = 12/255 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H  SAAL    +    + +       L  
Sbjct: 10  SRDNALLKELRRLSQDSSAYRKQGRVWLEGDHLCSAALARGQKPAIAVFSESFWPQALAE 69

Query: 84  DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A        +  V    I  +     +  G  L       P  + +      +VLD + 
Sbjct: 70  YARAATKNVVIADVLWSDISALESPAPM--GFVL-----PLPEAEGLDGRMPTVVLDRLQ 122

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    +   K  +   S  + ++  GA   +  +      D + ++
Sbjct: 123 DAGNVGSILRSASAFGFTQVAALKGTAALWSGKVLRAGMGAHFALRLVEGLAPAD-IDRL 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  SS     L +         I+G EG+G+ P  Q+ A     +  PG  ++
Sbjct: 182 E---VPLLATSSHEGDFLHRAALPWPCGWIMGHEGQGVSPALQQRARRHIRIAQPGGEES 238

Query: 263 LNVSNAAAVALYITQ 277
           LNV  AAA+ L+ + 
Sbjct: 239 LNVGAAAAICLHASA 253


>gi|78212346|ref|YP_381125.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
 gi|78196805|gb|ABB34570.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. CC9605]
          Length = 229

 Score =  162 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 11/158 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSPSESAVLAKSASGALEH 186
           R + L ++L+HV  PHN+ AILRS  A        +    R           +A G+ + 
Sbjct: 18  RMADLTVLLEHVEKPHNLSAILRSCDAVGALEAHAVSFDGR-----PRTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P     +   A++ +   GF+  G       K   +       A +LGAE  GL  + +
Sbjct: 73  VPLHDHPDTETAIRHLKGEGFRLYGTHLGVDAKDYRECDFTVPTAFVLGAEKWGLTDQAR 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
           +       + M G++++LNVS A A  L+    Q   A
Sbjct: 133 DLMDEALFIPMRGMVQSLNVSVATATLLFEALRQRQVA 170


>gi|227548325|ref|ZP_03978374.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079643|gb|EEI17606.1| rRNA methylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 273

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 100/247 (40%), Gaps = 21/247 (8%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTIDK 103
            E   + G   V +        +  ++     L     D+   LP    V  V    + +
Sbjct: 31  AEGPLICGR-LVES-----RFPLRSVIGFGGRLESFLADYGEVLPASVGVYEVTRPLLAE 84

Query: 104 IVGKEAVHQGLALET-APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           + G + +H+GL      P      +    ++ L++L+ V D  NIG+I R+A     DG+
Sbjct: 85  VAGYD-MHRGLIAVAERPQPLSVAEVTDGARTLVILEGVGDHENIGSIFRNAAGMDVDGV 143

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRIS----NLTDALQKMHSWGFQTIGLSS-DSK 217
           +     +        + + G    +P+  +         +L ++   G++ + L+  D+ 
Sbjct: 144 LFGAATADPLYRRSVRVSMGHALRLPFAHLDGTATTWQRSLDELRLTGWRLLSLTPDDAA 203

Query: 218 KPLEQEIKN------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           + L + + +      DK+AL++G EG GL           A + M     +LNV+ +AA+
Sbjct: 204 EHLAEALVDATGRPWDKVALLVGGEGPGLTEHAMRATHVRARIPMAPGTDSLNVATSAAI 263

Query: 272 ALYITQN 278
           A Y  Q 
Sbjct: 264 AFYERQR 270


>gi|312882902|ref|ZP_07742634.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369421|gb|EFP96941.1| tRNA guanosine-2'-O-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 227

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     I       P+E   L+ +++GA   +  
Sbjct: 16  RQADLTLCLEEVHKPNNVSAVIRTADATGLHKI---HAVWPNEMRTLSHTSAGARNWVDV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++ +A+ ++     Q +  +   +             A+ILG+E  G   + ++ +
Sbjct: 73  ETHDSIDEAVCQLKEQDMQVLVTNLSPTAVDFRDIDYTKPTAIILGSEKTGASERAKQLS 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 DQDIIVPMVGMVQSLNVSVASAVVLYEAQRQR 164


>gi|254390184|ref|ZP_05005404.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294817173|ref|ZP_06775815.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326446044|ref|ZP_08220778.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197703891|gb|EDY49703.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294321988|gb|EFG04123.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 278

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 104/271 (38%), Gaps = 10/271 (3%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           S   ++   +  +++ ++     R         + GV  +S A+ +    I  LL   + 
Sbjct: 2   SAVQRITSRNARFQQWEALLGNRRKRGSLRAFLVQGVRPISLAVEHGW-PIDALLH-DDR 59

Query: 78  LARLDWDANLPHPFPVKT--VPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQL 134
               DW   L      +   + P+ +  + GK E   + +A+   P        V    L
Sbjct: 60  RKLSDWARELLRTVRAERFALAPELLADLGGKTEGAPELIAVVGMPADGLDRIEVGPDFL 119

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-- 192
            ++ D    P NIG+++RSA AF   G+I T   +        ++ +G+L  +P +R+  
Sbjct: 120 GVLFDRPTSPGNIGSVIRSADAFGAHGMIVTGHAADLYDPKSVRATTGSLFSLPAVRVPA 179

Query: 193 -SNLTDALQKMHSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              +   +++  + G   +  G        +        + L++G E  GL    +E   
Sbjct: 180 PDEVMTWVERQRAAGLPLVLVGTDEKGDADVYDFDLTQPVLLLVGNETSGLSSAWRERCD 239

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +M  + M G   +LN + AA   LY      
Sbjct: 240 AMVGIPMTGAASSLNAATAATAVLYEASRQR 270


>gi|162382313|ref|YP_659936.2| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 250

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L + R   L + L+ V+ PHN+ A+LRS  A   + I         ++ +   +A G+  
Sbjct: 12  LLSTRQPSLTVCLEQVHKPHNVSAVLRSCDAVGINRI---HGVWDQKTKIRKGTAMGSEH 68

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +     +++ DA+  +     Q +    SD              A+ILG E  G   + 
Sbjct: 69  WVKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEA 128

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              A     + M G++++LNVS AAAV LY  Q   
Sbjct: 129 IAVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQRQR 164


>gi|226357312|ref|YP_002787052.1| tRNA guanosine-2-O-methyltransferase [Deinococcus deserti VCD115]
 gi|226319302|gb|ACO47298.1| putative tRNA guanosine-2-O-methyltransferase (transfer
           ribonucleate guanosine 2-methyltransferase) [Deinococcus
           deserti VCD115]
          Length = 222

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 5/156 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSPSESAVLAKSASG-ALE 185
           R   L +++D VN PHN+ AI+R+  A        +        S S    ++ SG A +
Sbjct: 17  RQPTLTVLMDEVNKPHNLSAIIRTCDAVGVLEAHAVPPKGGPLASFSGHTYEATSGSAHK 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKT 244
            +P    ++   A+  +   GFQ +      +     +        ++LGAE  G+  + 
Sbjct: 77  WVPVHSHTDAVSAVHALQGQGFQVLATHLSQRSVDYREPDYTRPTCVLLGAEKWGVSDEA 136

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + A     + M G++++LNVS AAA  L+  Q   
Sbjct: 137 ADAADHNIVIPMFGMVQSLNVSVAAATILFEAQRQR 172


>gi|326316588|ref|YP_004234260.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373424|gb|ADX45693.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 264

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 16/254 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLD 82
            R++   K ++   Q S    +   ++L G H   AAL    +    + A     A   +
Sbjct: 10  SRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAESAWPAWEHE 69

Query: 83  WDANLPHPFPVKTVPPQTI-DKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLDH 140
           W            V    +   + G E+  + G  +      +P    ++     +VLD 
Sbjct: 70  WGPAAARNV----VLADALWSDVSGLESPARMGFVV-----PAPEAPVLQAGLPTVVLDR 120

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + D  N+G+ILRSA AF    +   K  +   S  + ++  GA   +  +   ++ D + 
Sbjct: 121 LQDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGAHFALHLVEGLSVDD-ID 179

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +       +  SS     L +         ILG EG+G+    Q+ AT +  +  PG  
Sbjct: 180 TLR---LPLLATSSHGGDLLHRACLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGE 236

Query: 261 KALNVSNAAAVALY 274
           ++LNV  AAA+ L+
Sbjct: 237 ESLNVGAAAAICLH 250


>gi|126662427|ref|ZP_01733426.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
 gi|126625806|gb|EAZ96495.1| putative tRNA/rRNA methyltransferase [Flavobacteria bacterium
           BAL38]
          Length = 241

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 20/251 (7%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+ +  Q+ ++  Q +  F  GV  V   LN+   ++  L  TK     +       +  
Sbjct: 8   KLITSLQQKKYRKQEQLFFAEGVKVVQELLNSN-FELQDLFTTKEDFPSV-------YKN 59

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            V  V    + KI      +  LA+   P     ++    S L++ LD V DP N+G I+
Sbjct: 60  KVHAVSDLELKKISALTTPNTCLAVFKMPKAKNFVE----SGLILALDDVRDPGNLGTII 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F  + +  ++      +  + ++  G++  +  +   +L   L K         G
Sbjct: 116 RLCDWFGIETLFCSEESVDIYNPKVVQATMGSISRVNVVY-GSLEAFLTKTK---LPIFG 171

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALNVSNA 268
              D     ++ +  + + +++G E  G+ P  ++  +    +   G I   ++LNV+ A
Sbjct: 172 TFMDGSNIYQEALPKEGV-IVMGNEANGISPSVEKLVSERIAIPRFGNIQLTESLNVATA 230

Query: 269 AAVALYITQNH 279
            A+ L   + +
Sbjct: 231 TAIILSEFKRN 241


>gi|295095239|emb|CBK84329.1| rRNA methylases [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 229

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P      +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIVRTADAVGVHEV---HAVWPGARMRTMASTAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + +A+  +   G Q +  +  +K     +        +++G E  G+  +  
Sbjct: 71  VSVKTHQTIGEAVSHLKGRGMQVLATNLSAKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|109698962|gb|ABG38882.1| tRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
           atlantica T6c]
          Length = 256

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L + R   L + L+ V+ PHN+ A+LRS  A   + I         ++ +   +A G+  
Sbjct: 18  LLSTRQPSLTVCLEQVHKPHNVSAVLRSCDAVGINRI---HGVWDQKTKIRKGTAMGSEH 74

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +     +++ DA+  +     Q +    SD              A+ILG E  G   + 
Sbjct: 75  WVKTEMHTSIGDAVSVLKQQNMQVLVTHLSDDSVDFRDIDYTQPTAIILGQEKHGATEEA 134

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              A     + M G++++LNVS AAAV LY  Q   
Sbjct: 135 IAVADKNIVIPMVGMVQSLNVSVAAAVVLYEAQRQR 170


>gi|327538381|gb|EGF25053.1| rRNA methylase [Rhodopirellula baltica WH47]
          Length = 302

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 11/245 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
           RH    +     G   V   L +    +  +L      ++  +   +P   PV  +  + 
Sbjct: 53  RHRETDDGFIAEG-SLVVGRLLHSGLGVQSVLIHTGRESK--YLPLIPDSVPVYLIDREL 109

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAF 157
             ++ G +  H+G+           L+  R+S    L + L  ++DP N+G++LRSA A 
Sbjct: 110 GKELAGYD-FHRGVLAHGFSPTIEPLEKFRDSPQSSLALALMGLSDPENVGSLLRSAAAL 168

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               I+   +     +  + + +  ++    + R  N    L+ + + G  +I    D  
Sbjct: 169 GVRDILLGPQTISPMTRRVIRVSMASVFRHRFYRFDNPVGQLRDLANAGIASIATLLDDT 228

Query: 218 K----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 L   I++ +  L++G E  GL P+  E AT  + L M     +LNV  A+A+ L
Sbjct: 229 AIPLIDLSSAIQSKRRILMVGNEANGLPPEIAEAATHRSTLPMRNDTDSLNVGVASAIFL 288

Query: 274 YITQN 278
           Y    
Sbjct: 289 YELTR 293


>gi|162448040|ref|YP_001621172.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161986147|gb|ABX81796.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 233

 Score =  162 bits (411), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 104/256 (40%), Gaps = 26/256 (10%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            ++++ +K       K ++  Q +   +YG   V  AL      + +++ T   +     
Sbjct: 4   SKDNKKFKSWMKLKTK-KYRDQMDQYIVYGQTFVDLALKKG--VVEEIVTTNPNIEGTLI 60

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              L     V                           + +P +     S  ++VLD V +
Sbjct: 61  SEVLMKELKVTETSYDVF--------------AVCKKVSTPIV-----SNQILVLDDVQN 101

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAILRSA+AF+   ++ +   +   +    +++ GAL  + YI   ++ + +    
Sbjct: 102 PDNVGAILRSALAFNFMHVVFSNHTADLYNDKTIRASGGALFDL-YIERLDIHEFITLKK 160

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G+Q  G  +   +   +  K     L+LG EG+GLR KT E      ++     +++L
Sbjct: 161 QNGYQVFGADAHKSEL--EPDKTKPFILVLGNEGQGLRSKTIELLDGRLNIE-THHVESL 217

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A ++ +Y     
Sbjct: 218 NVTVAGSILMYEWSKQ 233


>gi|262091708|gb|ACY25298.1| rRNA methylase [uncultured actinobacterium]
          Length = 218

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 18/228 (7%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            ++ A+ +   KI +       LA L  DA          +    ++++       Q + 
Sbjct: 2   LIAEAI-SAGWKIEEQFIAPGGLAVLGTDART------FDLENGVMERVASTT-TPQPVI 53

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              A   S  L AV+ +  +++ D ++DP N+G ILRSA A     ++ T     + +  
Sbjct: 54  A-IAERRSSGLAAVKGAHWVVIADRISDPGNLGTILRSAEAAGVSAVVLTPGTVEAFNPK 112

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALI 232
           + ++++GA+ H+P I   +    ++++   GF+  G SS                KIAL+
Sbjct: 113 VVRASAGAMFHVPIIEDVS----VEEIRDNGFKVFGTSSHEQQGSIDFTTADLTGKIALL 168

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G E  GL      +  +   +   G  ++LNV+ A  +  +      
Sbjct: 169 VGNEAHGLDDNV--SVDAWLTIPHRGRSESLNVAMACTLVCFEAARQR 214


>gi|187478243|ref|YP_786267.1| RNA methyltransferase [Bordetella avium 197N]
 gi|115422829|emb|CAJ49357.1| putative RNA methyltransferase [Bordetella avium 197N]
          Length = 257

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 93/263 (35%), Gaps = 18/263 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN----ALA 79
            R++   K +     ++     P  L L GVH   A L         +   +      LA
Sbjct: 6   SRDNPTVKTLHRLLDQAGRRGAP--LLLEGVHLCEAWLQRHGLPEQAVFDYERLDRPELA 63

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            L  + +      +++     + + +      QG+A           + V  +   ++LD
Sbjct: 64  HLAREVSEARCIALES----RLMRGLASVESDQGVAFVVRAPQLSLPERVGTN--CVLLD 117

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G +LR+  A            + + S  + +S  GA   +      +L    
Sbjct: 118 RIQDPGNVGTLLRTCAAAGIRQAFLATGTAAAWSPKVLRSGQGAHFAMDIHEHVDLHALS 177

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MP 257
            ++          + D    L        +A + G EG+G+ P  Q  A     +   M 
Sbjct: 178 ARL---DVPLAVTTLDDATSLYDTALPASLAWVFGHEGQGVDPALQAQAALRLRIPHDMQ 234

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
             +++LNV  AAA+ L+  +   
Sbjct: 235 -AVESLNVGAAAAICLFEQRRQR 256


>gi|212692475|ref|ZP_03300603.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
 gi|237724320|ref|ZP_04554801.1| tRNA/rRNA methyltransferase [Bacteroides sp. D4]
 gi|212664950|gb|EEB25522.1| hypothetical protein BACDOR_01971 [Bacteroides dorei DSM 17855]
 gi|229437189|gb|EEO47266.1| tRNA/rRNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 178

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   T+D  + +    L +VLD V   HNIG++ R++ AF  D I      +   
Sbjct: 4   LKITELNRLTVDEFKKADKLPLAVVLDEVRSLHNIGSVFRTSDAFLVDCIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKI 229
              + K+A GA   + +    N  DA+Q++H  GF  + +   +    L+  +   + K 
Sbjct: 64  HPEMHKTALGAENSVEWRYKKNTLDAVQELHDQGFIVLAIEQVEGSTLLDKLELDADKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A+++G E KG++ +          +   G   +LNVS    + ++   N   K
Sbjct: 124 AIVMGNEVKGVQQEVVNACDGCIEIPQYGTKHSLNVSVTTGIIVWEFANKLMK 176


>gi|330827726|ref|YP_004390678.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
 gi|328802862|gb|AEB48061.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas veronii B565]
          Length = 243

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK---SASGAL 184
           A R   L + ++ V+ PHN+ AI+R+A A     +     ++      + K   +A G+ 
Sbjct: 14  AQRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRV-----HAVWPKTWIHKRKGTARGSQ 68

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +      ++  A+ ++ + G Q +    SDS             A+++G E  G+  +
Sbjct: 69  NWVDVKLHPDIGTAVAELKASGMQILATHLSDSSVDFRAIDYTKPTAILVGQEKHGIGEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS AAA  LY  Q   
Sbjct: 129 ALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 165


>gi|289704605|ref|ZP_06501036.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
 gi|289558669|gb|EFD51929.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
          Length = 280

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 99/242 (40%), Gaps = 8/242 (3%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           Y  M     + R  ++           V  AL+        LL  +   +  D  A  P 
Sbjct: 25  YTTMTDAALRRRVDAEHGVFLAESSQVVRRALDAGHTPRSFLLGDRYRESFADVLAAHP- 83

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV T P   ++ + G       LA    P   P  D +  ++ +++ + + D  N+GA
Sbjct: 84  DVPVFTGPDDVLEALTGFHLHRGALAAMDRPAPRPLADVLAGARRVLIAEDLVDHTNLGA 143

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA-LQKMHSWGFQ 208
           ++RSAVA   D ++ T + +        + + G +  +P+ R+     A L  + + GF 
Sbjct: 144 VVRSAVALGWDALLLTPQAADPLYRRAIRVSMGTVFRLPWARLPGPVAASLPALRAAGFA 203

Query: 209 TIGLSSDSKKP------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              L    +        +E     +++AL+LG EG G+RP+T     +   + MP  + +
Sbjct: 204 VAALEVTERAVGLDSARIEPLRTAERLALVLGQEGPGVRPETLAQTDADVVIPMPDGVDS 263

Query: 263 LN 264
           LN
Sbjct: 264 LN 265


>gi|290953042|ref|ZP_06557663.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313757|ref|ZP_06804333.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 209

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQ 245
           L      D +A++ GAEG G+R +T+
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTK 209


>gi|323449932|gb|EGB05816.1| hypothetical protein AURANDRAFT_72107 [Aureococcus anophagefferens]
          Length = 1088

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 108/268 (40%), Gaps = 27/268 (10%)

Query: 37  NQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALA--RLDWDANLPHPFPV 93
           N K R  +   +LF+  G ++V   + +    +  +  ++  +A  +    A      PV
Sbjct: 39  NLKERDVAGRGDLFILEGENSVHNLVQHGRMPLESVCVSERRVAPMKSLIAAVRARGVPV 98

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNI 147
             +  +    +VG    H+G+      L S     +           +++ +  N+  N+
Sbjct: 99  YALTHEDYSGLVGFN-FHRGVLACGRKLPSVAPGELLGALPATGPSTVVLCERTNNLDNV 157

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA+ R+  AF    ++   R +        + + G    IP+ R  ++ D +Q   + G 
Sbjct: 158 GAVFRNGAAFGAGAVVFDGRSADPYYRKSIRVSGGHALAIPFTRRGSIADVVQAAKASGH 217

Query: 208 QTIGL--------------SSDSKKPLEQ---EIKNDKIALILGAEGKGLRPKTQETATS 250
               L              +  +  P+ +   + + +++A+++GAEG GL  + Q  A  
Sbjct: 218 VVCALVTPPTSARSTAVDDAVGAPVPINEWRADDRPERVAVLMGAEGPGLTDEAQRLADV 277

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + M   + ++NV+ A ++AL+   +
Sbjct: 278 RLTIPMANAVDSVNVATACSIALHELAS 305


>gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana]
 gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana]
          Length = 400

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 35/229 (15%)

Query: 81  LDWDANLPHP-----FPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRN-- 131
           L  +A +P         +  V    + K+ G ++    + +AL   P     L   ++  
Sbjct: 174 LHEEAKIPQGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFTDLKDDKDII 233

Query: 132 ---------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                    +  ++VLD + DP N+G ++RSA+AF+ DG           +    +++ G
Sbjct: 234 TDCNKWFPSAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRG 293

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKI 229
           A   +P +   N      K+    FQ   L+                     Q +    +
Sbjct: 294 ASFQLPIVS-GNWNHL--KLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPL 350

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            LILG+EG GL  + ++    +  + M G  ++LNVS A  + LY+ QN
Sbjct: 351 CLILGSEGNGLSEQARKVC-VLVSIPMAGDFESLNVSVAGGIFLYMLQN 398


>gi|315224741|ref|ZP_07866564.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
 gi|314945369|gb|EFS97395.1| TrmH family RNA methyltransferase [Capnocytophaga ochracea F0287]
          Length = 248

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 96/244 (39%), Gaps = 20/244 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+    Q+ ++ ++     + G  ++   L    R +  L+AT+         A   +  
Sbjct: 8   KLIQKLQQKKYRNELNLFIVEGKKSIVEFLQAGYR-LELLIATE-------VFATALNSQ 59

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           P+  V  + + K+   +   +GLA+            +    +++ LD+V DP N+G ++
Sbjct: 60  PITLVSKEELRKVSSLKNPDEGLAI----FHQRQHKGILQEGVILALDNVQDPGNLGTLI 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F  + +I   +     +  + ++  G+L  +    + +L   L            
Sbjct: 116 RLCDWFGIETLICNSQTVDCYNPKVVQATMGSLTRVAVHYV-DLAGFLATCA---LPLYA 171

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNA 268
           +  D +     E   D   LILG E  G+ P+ +  A  +  +   G     ++LNV+ A
Sbjct: 172 MDLDGENLYTTEFPED-CVLILGNEANGISPEVRALADGIITIPRFGKLQQTESLNVAMA 230

Query: 269 AAVA 272
            A+ 
Sbjct: 231 GAIV 234


>gi|86358937|ref|YP_470829.1| RNA methylase protein [Rhizobium etli CFN 42]
 gi|86283039|gb|ABC92102.1| probable RNA methylase protein [Rhizobium etli CFN 42]
          Length = 273

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 11/245 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN--NPSRK---IFQLLATKNALARLD-WDANLPHPFP 92
           + R  +  EN F+     V   L   + +R+     ++L  +N +  L       P   P
Sbjct: 22  RERDLTGRENRFIAEGTVVLRMLAEAHAARRGFSAEKILLLRNRVDGLQSVLERFPASVP 81

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           V     + +D +VG   +H+G+           +  LDA+    L++V   +++  N G+
Sbjct: 82  VYVAEAKVLDGVVGFH-LHRGVLALGKREDRGEAALLDALPERALVLVGCGISNHDNAGS 140

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A AF  D ++  +           + + G++  +P+ R     D L  +   GF  
Sbjct: 141 MFRNAAAFRADAVLLDETCCDPLYRKALRVSVGSVLSVPHRRGGKALDLLLALAQRGFAI 200

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             LS   K  +       ++AL++G EG+GL           A +     + +LN + A 
Sbjct: 201 WTLSPHGKTDIRAIPAAARMALVIGTEGEGLPEALLARF-QSARIPQSDQLDSLNAATAT 259

Query: 270 AVALY 274
            +AL+
Sbjct: 260 GIALF 264


>gi|237748844|ref|ZP_04579324.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229380206|gb|EEO30297.1| RNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 260

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 97/262 (37%), Gaps = 15/262 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++  Y++++     S    +     L G+H   + L +    +  L     A      
Sbjct: 6   SKDNPQYRELKQLASSSAARRKSGQSVLDGIHLCQSYLEHIDVPL--LCVVSEASQHHPE 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQG------LALETAPLLSPTLDAVRNSQLLMV 137
            A +      +      +   +    + Q       L L   P+     +  +     ++
Sbjct: 64  VAAIMGECERRGGECLLLTDSL-FHPLSQVENGIDILFLIVTPVHEDCPELTQTG---VL 119

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD + DP N+G+ILRSA A     +  +   +   S  + ++  GA   +      +L  
Sbjct: 120 LDRIQDPGNLGSILRSAAAAGIRQVFCSPGTAAVWSPRVLRAGMGAHFLLEVFEDVSLEK 179

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            ++         I  +  +KK +     N  +A +LG EG+G+  +    A+    +   
Sbjct: 180 LIETAK---IPVIATTPYTKKTIYDFDLNRPVAWLLGHEGRGVDERLMVMASDKLVIPHM 236

Query: 258 GIIKALNVSNAAAVALYITQNH 279
           G +++LNV+  AAV  +     
Sbjct: 237 GAMESLNVAACAAVCFFEQVRQ 258


>gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
 gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
          Length = 246

 Score =  162 bits (410), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 104/248 (41%), Gaps = 18/248 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +  +K +     K ++  + +   +     V  A+ + S  I  +   +          
Sbjct: 7   QNPKFKLINKLRNK-KYRDKEDLFVIESKKLVEEAIKS-SLDIEFIFIREG--------L 56

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +L   FP+        +K+   ++   G            + + R    +++LDH+NDP 
Sbjct: 57  DLACNFPLVVFDESLFNKLSELKSPD-GFGAVVRKKKEEEISSNR----VLLLDHINDPG 111

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++RSA AF  + II T+      +    +++ G++  +  +++SN  D +  + S 
Sbjct: 112 NMGTMIRSAEAFGFNDIILTEGCVDIYNEKSLRASMGSVFRLKLVKLSN--DEIVNLKSR 169

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            ++ +    +     + +   + I L +G E  GL    +    S   + M G I++LN 
Sbjct: 170 -YKFLASHMEGCDVRKYDASLENIILAIGNEANGLSDFLRSLTDSFVKIAMQGKIESLNA 228

Query: 266 SNAAAVAL 273
           + AA++ +
Sbjct: 229 AIAASIMM 236


>gi|257056552|ref|YP_003134384.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256586424|gb|ACU97557.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 257

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 8/246 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPP 98
           +    S        G   V  AL     ++ +L  T+ A  R            +     
Sbjct: 17  RRSERSAAGRFLAEGAQAVREALRYG--RVHELFVTEAAAQRHTELVADAPSVSMIN--- 71

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNIGAILRSAVAF 157
               +++ +    QG+      +      A+    +L+ VL ++ DP N G +LR A A 
Sbjct: 72  DRAAELLSETVSPQGIVAVCDTVTVDLSAALTGRPRLVAVLVNIADPGNAGTVLRVADAA 131

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D +I         +    ++++G+L H+P +   ++   L    + G  T+     ++
Sbjct: 132 GADAVIFAGSCVDVHNGKCVRASTGSLFHLPVVAEPDVHRVLDACVAAGLTTVAAHGYAE 191

Query: 218 KPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             L   E  +   A + G E  GL       A     + + G  ++LN++ AAAV LY T
Sbjct: 192 ADLTTAEQLDGPTAWLFGNEAHGLPEDVLARAEHAVRVPLYGKAESLNLATAAAVCLYTT 251

Query: 277 Q-NHFA 281
              H +
Sbjct: 252 AVRHRS 257


>gi|149280368|ref|ZP_01886489.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
 gi|149228917|gb|EDM34315.1| putative tRNA/rRNA methyltransferase [Pedobacter sp. BAL39]
          Length = 249

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 99/251 (39%), Gaps = 12/251 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           ++S +QK ++  +     + G+ +++  + +   ++  +       + L    +LP    
Sbjct: 10  IKSLHQK-KYRKENGIFIIEGIKSIAEFIQSSY-QVHSIYYLAQYQSLLP---SLPANIK 64

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAIL 151
           +  V    ++KI       QG+        +  LD  +      +VLD V DP N+G I+
Sbjct: 65  LFEVNNAELEKI-STLQTPQGILALVNIPKTSGLDIELLKGNFSLVLDDVQDPGNLGTII 123

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A  F    II +       +    ++  G+L  +        TD    + +      G
Sbjct: 124 RTAEWFGFRQIICSPHTVEVYNPKTVQATMGSLSRLKVYY----TDLAPLLSNTPVPVFG 179

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D K   E     + +  ILG EG+G+ P+  +  T    +   G  ++LNV+  AA+
Sbjct: 180 AVLDGKSIYEGGWGTEGLV-ILGNEGQGISPEIMKLITHPVTIPRVGAAESLNVAICAAI 238

Query: 272 ALYITQNHFAK 282
                  +  K
Sbjct: 239 LCADISRNLNK 249


>gi|124023764|ref|YP_001018071.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
 gi|123964050|gb|ABM78806.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 229

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 12/167 (7%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---AVLA 177
            L   LD  R + L ++L+HV  PHN+ AILRS  A         + ++ + S       
Sbjct: 10  RLKAVLD-CRMADLTVLLEHVEKPHNLSAILRSCDAVGV-----LEAHAVNYSGRLPTFN 63

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAE 236
            +A G+ + IP    S++  A++ +   GF+  G       +        +  A +LGAE
Sbjct: 64  STAQGSQKWIPLKEHSSIEVAVKAIKESGFRLYGTHLGGNARDYRDCDFCEPTAFVLGAE 123

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
             GL             + M G++++LNVS AAA  L+    Q   A
Sbjct: 124 KWGLSELATPLMDEGIFIPMCGMVQSLNVSVAAATLLFEALRQRRLA 170


>gi|300022376|ref|YP_003754987.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524197|gb|ADJ22666.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 269

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 97/243 (39%), Gaps = 9/243 (3%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNN---PSRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           R   +   LF+  G   +  A +N   P   ++Q    ++ + R      L     V  V
Sbjct: 24  RKVRKETGLFVAEGASLLITARDNGFVPETLVYQSGTAESGITRGLVTHALNAGAEVLEV 83

Query: 97  PPQTIDKIVGKEAVHQGL--ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
               + K+  K+   Q +           P    V   +  + L+ + DP N+G I+R+A
Sbjct: 84  SEAVLGKLASKD-NPQTVLGVFRQRFAEPPPAPKVNAGETWVALEEIRDPGNLGTIVRTA 142

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A  C G+I         S    ++  G++  +P +++      +    +W    IG   
Sbjct: 143 DATGCAGVILVGTTCDPYSLDAVRATMGSIFAVPIVKMERSA-FISLQRAWAGDVIGTHL 201

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +++     +  +   +++G EG GL  +   + T +  + M G + +LN++ A  + LY
Sbjct: 202 TAREDFRS-LYREPQLIVMGGEGPGLSSEAAASCTKLVKIPMAGKLDSLNLAVATGLMLY 260

Query: 275 ITQ 277
             +
Sbjct: 261 QIR 263


>gi|33862541|ref|NP_894101.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640654|emb|CAE20443.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
          Length = 245

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 12/167 (7%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---AVLA 177
            L   LD  R + L ++L+HV  PHN+ AILRS  A         + ++ + S       
Sbjct: 26  RLKAVLD-CRMADLTVLLEHVEKPHNLSAILRSCDAVGV-----LEAHAVNYSGRLPTFN 79

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAE 236
            +A G+ + IP    S++  A++ +   GF+  G       +        +  A +LGAE
Sbjct: 80  STAQGSQKWIPLKEHSSIEVAVKAIKDSGFRLYGTHLGGNARDYRDCDFCEPTAFVLGAE 139

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
             GL             + M G++++LNVS AAA  L+    Q   A
Sbjct: 140 KWGLSKLATPLMDEGIFIPMSGMVQSLNVSVAAATLLFEALRQRRLA 186


>gi|227495981|ref|ZP_03926292.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
 gi|226834469|gb|EEH66852.1| rRNA methyltransferase [Actinomyces urogenitalis DSM 15434]
          Length = 287

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 93/258 (36%), Gaps = 23/258 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + R  ++           +  A+         L+A +         A   
Sbjct: 15  DYTSLTDVALRRRLETERGLYMAESSKVIVRAVEAGHAPRSFLMAPRWYDELRPVIAAAT 74

Query: 89  H--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR------NSQL 134
                      PV   P   ++ I G       LA    P L    + +        ++ 
Sbjct: 75  GCQGRDDGGGVPVFIAPEPLLESITGFHLHRGALAAMNRPALPSVGELLASARGGAGARR 134

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + VL+ + D  N+GA  RSA A   D ++ T   +        + + G +  +P+ RI +
Sbjct: 135 VAVLEDLVDHTNVGAAFRSAAALGIDAVLVTPHCADPLYRRSVRVSMGTVFQVPWTRIDH 194

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------IALILGAEGKGLRPKTQE 246
              AL ++H+ GF    L+         E             +A++LG EG GL P+T  
Sbjct: 195 WP-ALDELHAGGFTVAALALSEDSVSLGEFSASPACSGADSRVAVVLGTEGDGLAPRTIA 253

Query: 247 TATSMAHLHMPGIIKALN 264
            A ++  + M G + +LN
Sbjct: 254 AADAVVRIPMAGAVDSLN 271


>gi|121604675|ref|YP_982004.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
           CJ2]
 gi|120593644|gb|ABM37083.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
           CJ2]
          Length = 259

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 20/269 (7%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL 72
           FS+  +H +   R++   K ++  +Q +    +   ++L G H   AAL    + +  + 
Sbjct: 5   FSVPVTHVSS--RDNALIKDLRRLSQDNTAYRKQGRVWLEGDHLCRAALARGLKPVMAVF 62

Query: 73  ATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALE--TAPLLSPTLDA 128
           +      A  +W            +    + +I G E+  + G  LE  TAP L   + +
Sbjct: 63  SESFWPFAHAEWAQAAIKNI---VISDALLPEISGLESPARMGFVLELPTAPPLQANVAS 119

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                  ++LD V D  N+G+ILRSA AF    II  K  +   S  + ++  GA   + 
Sbjct: 120 -------VILDRVQDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGMGAHFALR 172

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   +     + + +     +  SS     L Q+      A  +G EG+G+       A
Sbjct: 173 LVEGVDP----EALAALTVPIVVTSSHHGSFLHQQPIPMPCAWAMGHEGQGVSDDLMARA 228

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +    +  PG  ++LNV+ AAA+ LY + 
Sbjct: 229 SLKVRIDQPGGEESLNVAAAAAICLYASA 257


>gi|332532739|ref|ZP_08408613.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037766|gb|EGI74216.1| tRNA (guanosine18-2'-O-) -methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 228

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 7/155 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R + L + L+ V+  HN+ AI+RSA A  C  +       P +   L   ++ G+   + 
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHV---HAVWPEKQKWLTNNTSGGSKNWLE 72

Query: 189 YIRISNLTDALQKMHSWG--FQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                N+ DA+  M       Q +    S+      +       A+I+G E  G+  K  
Sbjct: 73  THLHRNIDDAVTAMRERNPEIQILATHLSEDAVDFREVDYTKPTAIIVGQEKTGISEKAL 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E A     + M G++++LNVS AAA+ L+  Q   
Sbjct: 133 EYADQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167


>gi|145297150|ref|YP_001139991.1| tRNA guanosine-2'-O-methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849922|gb|ABO88243.1| tRNA (guanosine-2'-O-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 248

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK---SASGAL 184
           A R   L + ++ V+ PHN+ AI+R+A A     +     ++      + K   +A G+ 
Sbjct: 14  AQRQLDLTVCMEEVHKPHNLAAIVRTADAIGIHRV-----HAVWPKTWIHKRKGTARGSQ 68

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +      ++  A+ ++ + G Q +    S+S             A+++G E  G+  +
Sbjct: 69  NWVDVKLHPDIGSAVAELKASGMQIVATHLSESSVDFRTIDYTRPTAILVGQEKHGIGEE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A     + M G++++LNVS AAA  LY  Q   
Sbjct: 129 ALALADHHIVIPMVGMVQSLNVSVAAAAILYEAQRQR 165


>gi|317970561|ref|ZP_07971951.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CB0205]
          Length = 267

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 12/261 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +    ++++ +Q S+   +   L L G H +   L        QLLAT   L R   
Sbjct: 6   SRRNPLVGRLRALHQ-SKGRREQGLLLLEGTHQLQELLRLGLSP-EQLLATPAWLERHGS 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                    ++ V    +  +   E    G+         P    +     ++ LD + D
Sbjct: 64  LLGNLIE-RLQPVGETVLAAVATTETPD-GVVATFKREALPKAQGI--GAFVLALDQLQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN---LTDALQ 200
           P N+G ++R+A+A   + +      +      + ++++GA   +P+ R  +   L   L 
Sbjct: 120 PGNLGTLMRTALAAGVNDLWLGGG-ADPCQPKVLRASAGAALALPHWRDPDRTGLVARLA 178

Query: 201 KMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +  + G Q +      D   P  +        L+LG EG GL P+    A+    +    
Sbjct: 179 EAAAAGHQLVATLVDPDRAIPYWELDWTRPTVLLLGNEGAGLHPELAALASHRVTIPHSP 238

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LNV  AAA  L      
Sbjct: 239 AVESLNVGVAAAPLLLERWRQ 259


>gi|218463384|ref|ZP_03503475.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli Kim 5]
          Length = 179

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 78/164 (47%), Positives = 105/164 (64%), Gaps = 14/164 (8%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQS-----FNQKSRHTSQ--------PENLFLYGVHTVSAA 60
           S KD+HYA LRR HRD K+ +        QK +   +        P+ ++LYG+HTV AA
Sbjct: 16  SAKDTHYANLRRAHRDAKRERGEIPTPLPQKRKRGPEDWKPPALAPDQVYLYGLHTVRAA 75

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L+NP RK  +L  T+NALARL+ D         + V P  IDK++G EA+HQG+ LET P
Sbjct: 76  LDNPERKKIKLSVTQNALARLEIDVETL-GIAFEIVSPHEIDKVLGPEAIHQGVMLETLP 134

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
           L    L+A+++S LL+VLD V DPHN+GAI+RSAVAF+   +IT
Sbjct: 135 LPVRRLEALKDSPLLLVLDQVTDPHNVGAIMRSAVAFNAGAVIT 178


>gi|56707583|ref|YP_169479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670054|ref|YP_666611.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456652|ref|ZP_03665125.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874404|ref|ZP_05247114.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604075|emb|CAG45072.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320387|emb|CAL08455.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254840403|gb|EET18839.1| yjfH, tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158740|gb|ADA78131.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 218

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 10/213 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH     ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L      D +A++ GAEG G+R +T+       
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTKAIVNPRV 216


>gi|87125562|ref|ZP_01081407.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
 gi|86166862|gb|EAQ68124.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. RS9917]
          Length = 229

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 15/171 (8%)

Query: 120 PLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           PLL    + +R+      + L ++++HV  PHN+ AILRS  A         + ++ S S
Sbjct: 2   PLLPRRFERLRSVLNRRMADLTVLVEHVEKPHNLSAILRSCDAVGV-----LEAHAVSLS 56

Query: 174 ---AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKI 229
                   +A G+   +P     ++T A+  + + GF+  G +     +           
Sbjct: 57  GRPRTFNSTAQGSQRWVPLRDHPDITAAVHHLKAQGFKLYGTNLGVDARDYRDCDFTGPC 116

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A +LGAE  GL             + M G++++LNVS A A  L+      
Sbjct: 117 AFVLGAEKWGLSDAATALMDQAVFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 355

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/292 (19%), Positives = 112/292 (38%), Gaps = 35/292 (11%)

Query: 18  SHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK------IFQ 70
           SH   +    +   K      Q S +     ++ + G   +         K      I  
Sbjct: 64  SHVNSITSTTNPFVKHCLKLRQSSSYRHAHGSVLVVGAIPIREVCMFQMNKQGITSEIEC 123

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LL  + A      ++       V ++  + +  +   E+V + +AL   P     L   +
Sbjct: 124 LLLHEEAQIPQGLESLSIRIVRVSSLVMKKLSGVQSTESV-EAIALMRIPSSFIDLKDDK 182

Query: 131 N------------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           +            +  ++VLD + DP N+G ++RSA+AF  DG           +    +
Sbjct: 183 DIITDCNKWFPSSAHRVLVLDSIQDPGNLGTLIRSAMAFHWDGAFLLPGCCDPFNDKALR 242

Query: 179 SASGALEHIPYIRIS-NLTDALQKMHSWGFQTIG-----------LSSDSKKPLEQEIKN 226
           ++ GA   +P +  + N    L+  H +  + +            L S       Q +  
Sbjct: 243 ASRGASFQLPIVSGNWNHLKVLE--HEFQMKLLAGHPATSTQKPKLVSKLSVEFAQSVAE 300

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + LILG+EG GL  ++++    +  + M G  ++LNVS A  + L++ Q+
Sbjct: 301 KPLCLILGSEGNGLSEQSRKVC-ELVSIPMAGDFESLNVSVAGGIFLFMLQS 351


>gi|256830493|ref|YP_003159221.1| TrmH family RNA methyltransferase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579669|gb|ACU90805.1| RNA methyltransferase, TrmH family, group 3 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 251

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 12/237 (5%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH-PFPVKTVPPQTIDKIVGKEAVH 111
           G   V   L +    +  +  +++A    +            + V    +D++      H
Sbjct: 17  GRKPVLELLASRPHALDTVFLSEDATGLGEVIGKCRELGVRFRKVRRPDLDRM--FPGNH 74

Query: 112 QGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           QG+           LD +          L++ LD V DP N+G + R+ +A    G++  
Sbjct: 75  QGVVARLRGRQLIELDRLITQVCQSPFPLILALDQVQDPGNVGTLARTLLALGGAGLLFP 134

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSKKPLEQE 223
           K  +       AK+A+GAL+ +P  ++ NL  AL      G      G   DS+  L Q 
Sbjct: 135 KDRTAFIGPAAAKAAAGALDSLPLCQVVNLARALDTCAEAGLAIYGSGTGPDSRN-LFQA 193

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             N    L+LG E KG+RP   +  T M  + M G   +LNV+ A A+ +       
Sbjct: 194 RLNFPAVLVLGNEDKGMRPNVGKRCTEMLSIPMQGGFDSLNVAQAGAMIMTEMLRQR 250


>gi|307294700|ref|ZP_07574542.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306879174|gb|EFN10392.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 265

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+++S  +K +           G+  ++ A       + ++L    +   L  D 
Sbjct: 9   SNPLVKRVRSLREK-KFRKAEGLFLAEGLRILTEA--REEGVLPEMLFHAGSTHPLAIDL 65

Query: 86  NLP---HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                     V    P  + KI GK+   Q +       L+P     R  + + +V   +
Sbjct: 66  IAAMEAAGGDVIETTPDILSKISGKD-NPQAVVGVYRDRLTPLAKLDRTKADIWIVAQSL 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ILR+  A    G+I         S    +++ GAL   P  +     + +  
Sbjct: 125 RDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQPITQAR-WGEFMHW 183

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +     + IG S  +    ++        L++G E +GL    +     +  + M G   
Sbjct: 184 LRQGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDLLVKMPMLGKAD 243

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN + A AV  Y   N 
Sbjct: 244 SLNAAVACAVMAYELLNQ 261


>gi|152993149|ref|YP_001358870.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425010|dbj|BAF72513.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 258

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 5/188 (2%)

Query: 89  HPFPV-KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           +  PV    P   +++IVG    H  +     P    TLDA+ N   +++LD +++  NI
Sbjct: 69  YTIPVAYVAPKTVLEQIVGHRLHHNVMMHGVRP-KESTLDALGNH--IIMLDEISNTDNI 125

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+I RSA A     ++  ++     +    + + G +  + + R  N+ + +QK+   G+
Sbjct: 126 GSIARSAAALDVGSLLLPRQGPHPYARRALRVSMGHIGKLKFHRYDNIKETIQKLKKMGY 185

Query: 208 QTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           +      +    PL Q     K AL++G E  G+  +       +  + M   IK+ NV+
Sbjct: 186 RIFAAEVTKDSTPLSQVRVPGKWALLMGHEQLGISDEILALCDEVVTIEMEEGIKSFNVA 245

Query: 267 NAAAVALY 274
            AA++ +Y
Sbjct: 246 VAASIMMY 253


>gi|328725718|ref|XP_003248590.1| PREDICTED: putative TrmH family tRNA/rRNA methyltransferase-like
           [Acyrthosiphon pisum]
          Length = 344

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 13/202 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---NLPHPFPVKTVPPQTIDK 103
           +   + G H V  A+ +    I ++L  +    +   +           V+TVP   ID 
Sbjct: 2   DESIIVGRHAVKEAITSGH-TINKVLIQEGINKKQIGEILKIAKSEKIVVQTVPKSKIDY 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDA-------VRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +   +  HQG+A + AP     L+        + +   L++LD + DPHN+G+I+R+A A
Sbjct: 61  LT--DVPHQGIAAQIAPYPYKELEDFISETKDIDHVPCLLMLDGLEDPHNLGSIMRTADA 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
              DGII  KR S   +A +AK+++GA++H+P IR++NL   ++++    +   G  + +
Sbjct: 119 IGIDGIIIPKRRSVQLNATVAKASTGAIQHVPVIRVTNLPQTIERLQEVRYWVAGTDAKN 178

Query: 217 KKPLEQEIKNDKIALILGAEGK 238
                Q      + +++G+EG+
Sbjct: 179 ATDYRQMDAGMPLVIVIGSEGE 200


>gi|294142851|ref|YP_003558829.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
           DSS12]
 gi|32562924|dbj|BAC79237.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea]
 gi|293329320|dbj|BAJ04051.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella violacea
           DSS12]
          Length = 232

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E    ++  LD  R   L + LD V+  +NI A++R+A A     +     +   E  V 
Sbjct: 4   ERLARINEMLDN-RQPDLTLCLDRVHKTNNIAAVIRTADAVGIHQVHAV--WPDIEMRVS 60

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGA 235
             +ASG+ + +  I+  ++ DA+Q   +   Q +  + S       +        +ILG 
Sbjct: 61  GNTASGSQQWVKTIKHYHMDDAVQAFRAQDMQILATNFSADAVDFREIDYTRPTVIILGN 120

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E  G+ P+    A     + M G++++LNVS A+A+ +Y  Q   
Sbjct: 121 EHDGVSPEGIAAADQHIIIPMIGMVQSLNVSVASALIMYEAQRQR 165


>gi|224537157|ref|ZP_03677696.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521212|gb|EEF90317.1| hypothetical protein BACCELL_02034 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 175

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   +++  + +    L++VLD++   HNIG++ R++ AF  + I      +   
Sbjct: 4   LKITELNRISIEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKI 229
              + K+A GA   + +  + N  +A+  +   G+    +  ++    L++    +  K 
Sbjct: 64  HPEMHKTALGAEFTVDWKYVDNCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG++ +  + +     +   G   +LNVS  A + ++
Sbjct: 124 AVVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|120610518|ref|YP_970196.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120588982|gb|ABM32422.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 260

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 102/258 (39%), Gaps = 14/258 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++   Q S    +   ++L G H   AAL    +    + A     A  +W
Sbjct: 10  SRDNAFVKDLRRLAQDSGAYRRQGRVWLEGDHLCRAALERGVQPAIGVYAES---AWPEW 66

Query: 84  DANLPHPFPVKTVPPQTI-DKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           +           V    +   + G E+  + G  +       P    ++     +VLD +
Sbjct: 67  EREWGAAAARNVVLADALWADVSGLESPARMGFVVPV-----PEAPVLQAGLPTVVLDRL 121

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G+ILRSA AF    +   K  +   S  + ++  GA   +  +       A+  
Sbjct: 122 QDAGNVGSILRSASAFGFRQVAALKGTAGLWSPKVLRAGMGAHFALHLVEGL----AVDD 177

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + +     +  SS     L +         ILG EG+G+    Q+ AT +  +  PG  +
Sbjct: 178 IDALALPLLATSSHGGDLLHRARLPWPCGWILGHEGQGVSEALQQRATHLIRIAQPGGEE 237

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV  AAA+ L+ +  H
Sbjct: 238 SLNVGAAAAICLHASAAH 255


>gi|85707839|ref|ZP_01038905.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85689373|gb|EAQ29376.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 266

 Score =  161 bits (409), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 93/257 (36%), Gaps = 11/257 (4%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL-----AR 80
           ++   K ++S   K +H  +     + G+  +  A         QL+  +N        R
Sbjct: 9   SNPTVKYLRSLRDK-KHRKRAGQFLVEGLRLLEDA-RVSGHVPRQLVMAENRDRHDLVDR 66

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-LLMVLD 139
           L+ +        V T  P  + KI GK +  Q +      L +      R S  + +V  
Sbjct: 67  LEGEVGAAGG-EVITTTPDILSKITGK-SNSQSVVGVFDELDTSLARLDRGSANIWLVAQ 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G +LR+  A    G+I     +   SA   +++ GA+      +     + +
Sbjct: 125 DLRDPGNLGTMLRTGDAVGAGGLILIDDCADPFSAEAVRASMGAVFTQGMAQAR-WDEFV 183

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +     Q +  S     P           +++G E +GL    +        + M G 
Sbjct: 184 PWLRGGPGQLVAASLRDAVPYRGAAYQAPCFILVGNESQGLPEAYEAECDLRVTMPMKGR 243

Query: 260 IKALNVSNAAAVALYIT 276
             +LN + A AV  Y  
Sbjct: 244 ADSLNAAVAGAVLAYEV 260


>gi|113953546|ref|YP_729908.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
 gi|113880897|gb|ABI45855.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9311]
          Length = 229

 Score =  161 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 12/170 (7%)

Query: 118 TAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSPS 171
             P     L AV   R + L ++++HV+ PHN+ AILRS  A        +  + R    
Sbjct: 3   ILPRRFERLRAVLNQRMANLTVLVEHVDKPHNLSAILRSCDAVGVLEAHAVSLSGR---- 58

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIA 230
            S     +A G+   +P     N+ +A++ +   GF   G +                 A
Sbjct: 59  -SRTYNSTAQGSQRWVPLHSHPNIEEAVKTLKDRGFHLYGTNLSVDALDYRDCDFTGPTA 117

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +LGAE  GL     +   +   + M G++++LNVS A A  L+      
Sbjct: 118 FVLGAEKWGLSENATKLMDTDVFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|198274154|ref|ZP_03206686.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
 gi|198273232|gb|EDY97501.1| hypothetical protein BACPLE_00293 [Bacteroides plebeius DSM 17135]
          Length = 221

 Score =  161 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 3/169 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L       V    L++VLD V   HNIGA+ R++ AF  + I      +      +
Sbjct: 51  EMNRLTVEEFKEVDKLPLVVVLDEVRSLHNIGAVFRTSDAFLVNCIYLCGITATPPHPEM 110

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALIL 233
            K+A GA   + +    +  DA+ ++H+ G+  + +   +   L  E+   K  K A++L
Sbjct: 111 HKTALGAEYTVDWKYFKHTQDAVNELHNDGYTVLAIEQCAGSTLLDELVLEKGRKYAIVL 170

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E KG++ +  +       +   G   +LNVS  A + ++   +   K
Sbjct: 171 GNEVKGVQQEVVDMCDGCIEIPQFGTKHSLNVSVTAGIMIWEFAHKLFK 219


>gi|156743085|ref|YP_001433214.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus castenholzii DSM
           13941]
 gi|156234413|gb|ABU59196.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus castenholzii DSM
           13941]
          Length = 496

 Score =  161 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 7/243 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPP 98
                     G      AL++    +  L  T   L        L        P   +  
Sbjct: 242 RRARGQFLAEGPLLAFRALDD--LPVEDLFYTGELLRDPAGTVLLRRAADLGVPAHRISE 299

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  I     +   +      L +          +++  + +N+P N+G  LR+A A  
Sbjct: 300 GLMGLITPTRPIPSVITAIWGQLRNVADYRPGRRAVILATEQINNPENLGMTLRTADAAG 359

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            + +I     +        ++A GA+  IP    ++L   + +  + G   +G + + ++
Sbjct: 360 VEAVIVAGSGADPFHRECVRAARGAVGRIPIYTCADLPTWVGQARARGIHVVGATGNVER 419

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQ 277
            L        + +I+G E +GL   T    +S+  + M     +LNV  AA V LY I +
Sbjct: 420 TLYDADLPLPLMIIVGNETEGLTDATLAVCSSLVRIPMAPGQDSLNVGVAAGVILYDIVR 479

Query: 278 NHF 280
              
Sbjct: 480 RRL 482


>gi|111023734|ref|YP_706706.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110823264|gb|ABG98548.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 283

 Score =  161 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 109/265 (41%), Gaps = 11/265 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           RN R +++ QS+       ++     + GV  ++ AL +    I  LL   +     DW 
Sbjct: 20  RNAR-FQQWQSYLTNRAKRTKAGRFLIQGVRPLNLALEHDW-PIESLLHRIDGPPLSDWA 77

Query: 85  ANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR--NSQLLMVLDH 140
             L     V+   V  + + ++  K        +  A   +P L  +R  +  L++V D 
Sbjct: 78  RELLETRSVEQIGVSAELMAELGEKTTTTAPELIAIAKTRTPRLKDLRLQSVPLIVVFDR 137

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL- 199
              P N+G ++RSA AF  D ++     +        ++++G+L  +P + +S++ + L 
Sbjct: 138 PASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVSSVDEILA 197

Query: 200 --QKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                 + G     +G        ++         L++G E +G+    ++   ++ ++ 
Sbjct: 198 FRDARRASGTDLHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRDGCDTVVNIP 257

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           + G   +L   +A AVALY      
Sbjct: 258 IGGAASSLGAPSAGAVALYEIARQR 282


>gi|312170608|emb|CBX78871.1| putative RNA methylase [Erwinia amylovora ATCC BAA-2158]
          Length = 231

 Score =  161 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       P S    +  SA+G+   
Sbjct: 14  AARQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEV---HAVWPGSRMRTMVSSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ DA+  +     Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRSIADAVTCLKGQNMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITREAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|256830639|ref|YP_003159367.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579815|gb|ACU90951.1| tRNA guanosine-2'-O-methyltransferase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 201

 Score =  161 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 4/155 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEH 186
           A R   L +VL++++DPHN+ AILRS  AF   G+     Y+  +   LA S+SG A + 
Sbjct: 19  ARRQPDLTLVLNNIHDPHNVSAILRSCDAFGVFGVHLY--YTKEKFPSLANSSSGSAKKW 76

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I   R       +Q +   G Q +G   S + +P+         A+ILG E +G+ P  +
Sbjct: 77  IDLTRHREAGPMIQGLRGRGMQIVGTGFSPTARPIMDIDFTRPTAIILGNEHRGMDPDVK 136

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  ++ M G++++LNVS AAA  LY      
Sbjct: 137 IHVPDEIYIPMFGMVQSLNVSVAAATILYEAMRQR 171


>gi|227485251|ref|ZP_03915567.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236711|gb|EEI86726.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 239

 Score =  161 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 101/249 (40%), Gaps = 21/249 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++++K +     K ++  +  +  +     V  A+ + ++  F  L       +     
Sbjct: 7   SNQNFKFLNKLKMK-KYRDKENSFIIESKKLVDEAIASSAKVDFIFL-------KEGVSY 58

Query: 86  NLPHPFPVKTVP-PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
              H   +        I  +   +    G+           + + +    +++LD  NDP
Sbjct: 59  ETSHKTLIFCESLFTKISSMTSPD----GIGAVIKKKDPVEISSSK----ILLLDGTNDP 110

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++RSA AF    +I     +   +    +++ G++  +  +  +   D ++K+ S
Sbjct: 111 GNLGTMIRSAEAFGFKDVILMPGTADVYNEKTLRASMGSIFRLNILNKT--YDDIKKLKS 168

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             ++ +    D    +    K+ KI + +G E  GL  + +E       + M G I++LN
Sbjct: 169 C-YRILSADMDG-LDIRNYKKDSKIIIAIGNEANGLSQEMREITDEFIKIPMEGEIESLN 226

Query: 265 VSNAAAVAL 273
            + AA++ +
Sbjct: 227 AAIAASIIM 235


>gi|237746707|ref|ZP_04577187.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229378058|gb|EEO28149.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 271

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 107/262 (40%), Gaps = 13/262 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++  Y+K++     S  + + E   L G+H   A L +    +  + A++ +    + 
Sbjct: 6   SRDNPQYRKLRQLASNSAASRKGEYAILDGIHLCQAYLGHVGIPVLCV-ASQTSQHHPEV 64

Query: 84  DANLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            A +            +   ++ + + +      +    +     T   +R +   ++LD
Sbjct: 65  SAIVQECKSGGAKCLLLT-DSLYRPISQVENGVDIVFVISKPAVQTCPVLRQTA--VLLD 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            + DP N+G+ILRSA A     +  +   + + S  + ++  GA   +  +    L D +
Sbjct: 122 RIQDPGNLGSILRSAAAAGIARVFCSAGTASAWSPRVLRAGMGAHFLLEIVENVVLEDVM 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +         I  +  ++  +        +A +LG EGKG+R    + A+    +   G 
Sbjct: 182 EASE---IPVIATTPYTETTIYDCDLRLPVAWLLGHEGKGIRESLLDKASDRVVVPHQGA 238

Query: 260 IKALNVSNAAAVALYI--TQNH 279
           +++LNV+  AAV  +    QN 
Sbjct: 239 MESLNVAACAAVCFFEQVRQNR 260


>gi|72383592|ref|YP_292947.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str.
           NATL2A]
 gi|72003442|gb|AAZ59244.1| tRNA (guanosine-2'-O-)-methyltransferase [Prochlorococcus marinus
           str. NATL2A]
          Length = 229

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 120 PLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           PLL    + +++      S L +++++V  PHN+ AI+RS  A     +     ++  + 
Sbjct: 2   PLLPRRFERIKSVLNRRISDLTVLIENVEKPHNLSAIIRSCDAVGV--LEAYAIFNKEKF 59

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALI 232
                +A G+ + +   +    T+A++ +   GF+  G + + +     +       A +
Sbjct: 60  LTFNSTAQGSQKWVKINQYKKTTEAIKVLKEKGFKLYGTNLNPRSIDYRKCDFKGPTAFV 119

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
           LGAE  G+  +         H+ M G++++LNVS AA+  L+    Q   A
Sbjct: 120 LGAEKWGISEEASSLMDEHIHIPMRGMVESLNVSVAASALLFEALRQRQVA 170


>gi|54113813|gb|AAV29540.1| NT02FT1642 [synthetic construct]
          Length = 218

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 10/213 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH     ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIGVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L      D +A++ GAEG G+R +T+       
Sbjct: 184 LYSMNLVDSVAIVAGAEGSGMRQRTKAIVNPRV 216


>gi|167629871|ref|YP_001680370.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
 gi|167592611|gb|ABZ84359.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
           Ice1]
          Length = 272

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 90/245 (36%), Gaps = 9/245 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLD 82
           ++R  K+ +S ++K +         + GV     A  +     + L   + A     R  
Sbjct: 7   DNRHVKEARSLSRK-KERGVTGKYLIEGVRLAEEAAASSVSLAYCLYTERVAAQPRGRRL 65

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET--APLLSPTLDAVRNSQLLMVLDH 140
            D           V  + +  I   E   QG+ L    AP     + A      L+++D 
Sbjct: 66  LDRLAAAGVDCLEVDDRALATITETEQS-QGIVLVANLAPAHWEAVIAAPE-PFLLIVDG 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V DP N+G I+R+A A    G++ T          + +   GAL  +P   + +      
Sbjct: 124 VQDPGNLGTIIRTAEAAGVTGVLLTPGTVDPYGPKVIRGTMGALFRLPVATVPSAKGLAA 183

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +           +    P  +   +   IA+++G+E  G RP   + A     + +   
Sbjct: 184 SLRERDISLAVADARDGVPYFEAPWDRGSIAIVIGSEAHGPRPFWGDLAQLRVRIPLAPP 243

Query: 260 IKALN 264
           +++LN
Sbjct: 244 VESLN 248


>gi|327351571|gb|EGE80428.1| RNA methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 596

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 135/364 (37%), Gaps = 97/364 (26%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           ++ +EK+ +  +     L R      ++     ++   +   + F+YG   V AAL    
Sbjct: 195 ERNAEKLAARSEQTEFNLERPPHTRPQVSITAPRAIPYTTAASEFIYGASAVLAALRCGR 254

Query: 66  RKIFQLLA-------------TKNALARLDWDAN--LPHPFPVKTVP---PQTIDKIVGK 107
           RK+++L                +     LD      L     VK V    P+ +DK+ G 
Sbjct: 255 RKLYKLYIYDAPDKVSLRLGRKQPRDPMLDTITKFGLAAGVHVKQVAGNWPKLLDKMSG- 313

Query: 108 EAVHQGLALETAPLLSPTLDAV-------------------------------------- 129
              H G  LE + L    +D++                                      
Sbjct: 314 GRPHNGCILEASQLPKLPVDSLLPVASLSDTHFNASVCQQSAEEAEVNGTSGRIPRWAYK 373

Query: 130 -------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                              ++LD + D  N+GAI+RSA  F  D II + R S   SAV+
Sbjct: 374 DEDCSLTENVFKPSRYPFALLLDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVV 433

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGF---------------QTIGLSSD---SKK 218
            K+++GA E+IP +  +N T+ L+     G+               QT G S++   S++
Sbjct: 434 IKASAGAAENIPILTTTNPTNFLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRR 493

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAA 269
            +  ++      L+LG+E +GL+   ++ A     +              + +LNVS A+
Sbjct: 494 DVSTKLSEAPCILMLGSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVAS 553

Query: 270 AVAL 273
           A+  
Sbjct: 554 ALLC 557


>gi|262366971|gb|ACY63528.1| tRNA/rRNA methyltransferase [Yersinia pestis D182038]
          Length = 213

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 11/212 (5%)

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-- 131
           T      L W A     + V  V    + K  G E  H G+            +      
Sbjct: 2   TPRFREALKWMAANRKAYHV--VEEDELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQ 58

Query: 132 ---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 ++ L+ V +PHN+G I+R+   F  +G++     +  ES    ++A G  EHI 
Sbjct: 59  TQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIK 117

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            I   +    L      G+  +  SS     L +     K+ L+LG E  GL     +  
Sbjct: 118 AINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQG 177

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
                +   G +++LNVS A  + L  +  QN
Sbjct: 178 DLSVSIGGTGRVESLNVSVATGILLAEWWRQN 209


>gi|163750719|ref|ZP_02157955.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
 gi|161329563|gb|EDQ00555.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella benthica KT99]
          Length = 231

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 4/165 (2%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E    ++  LD  R   L + LD V+  +NI A++R+A A     I     +   E  V 
Sbjct: 4   ERLARINEMLDN-RQPDLTLCLDKVHKTNNIAAVIRTADAVGIHQIHAV--WPDIEMRVS 60

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGA 235
             +ASG+ + +  I+  ++ DA     + G Q +  + S       +       A+ILG 
Sbjct: 61  GNTASGSQQWVKTIKHYHMHDAEAAFRAQGMQILATNFSKEAVDFREIDYTRPTAIILGN 120

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E  G+  +    A     + M G++++LNVS A+A+ +Y  Q   
Sbjct: 121 EHDGVSAEGIAAADQHIIIPMIGMVQSLNVSVASALIMYEAQRQR 165


>gi|158313567|ref|YP_001506075.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
 gi|158108972|gb|ABW11169.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EAN1pec]
          Length = 310

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 9/238 (3%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
                 + G   V+AAL   +  + +L   ++A  R   D       PV+ V       +
Sbjct: 60  GEGLFLVEGAQAVTAALAVGA--LVELFVGESAAERHA-DLLAAADLPVRLVTDAAAAAL 116

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             +    QGL    A L    L  +   +L+ V +  NDP N G ++RSA A   D ++ 
Sbjct: 117 -SETVTPQGLV-GVAELPRHELADLGRPRLVAVCEGANDPGNAGTVIRSADAAGADAVVF 174

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
           T            ++++G+L H+P +   +    +  +   G   +  S  + + L+   
Sbjct: 175 TGNSVDPFGGKCVRASAGSLFHLPVVVAEDGPAVVGALRRAGCLVLAASGHAARDLDDLA 234

Query: 225 ----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    A + G E +GL P T  +A +   + + G  ++LN++ A+A+ LY +  
Sbjct: 235 GVGTLAGPTAWVFGNEARGLTPATAASADAAVRVPVYGQAESLNLAVASALCLYASAR 292


>gi|85711929|ref|ZP_01042984.1| rRNA methylase SpoU [Idiomarina baltica OS145]
 gi|85694326|gb|EAQ32269.1| rRNA methylase SpoU [Idiomarina baltica OS145]
          Length = 230

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L +V++ V+  HN+ A++R+A A     +      S  +  V   +A G+   +
Sbjct: 14  AFRQPDLTVVMEGVHKHHNLSAVVRTADAVGVHEMHAIWLSS--KMRVSGGTALGSQNWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S L+ A++++   G Q +    SD      +       A++LG E  G   +  +
Sbjct: 72  NVHHHSQLSPAVEQIKQQGMQVVVTHLSDQAVDFREIDYTQPTAILLGQEKHGATEEALK 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A AV LY  Q   
Sbjct: 132 IADHHVKIPMVGMVQSLNVSVAGAVMLYEAQRQR 165


>gi|220903872|ref|YP_002479184.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868171|gb|ACL48506.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 250

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 2/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +VL +++DPHN+ AI RS  AF    +      +    A+  K+++ A + +  
Sbjct: 74  RQPDLTLVLANIHDPHNVSAIYRSCDAFGVSRVNLY-YTNTPFPALGRKTSASARKWVES 132

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R  +    ++ +     Q +  S S + +PL         A+I+G E  G+ P+  + A
Sbjct: 133 ARHKDSAALMESLRGQNMQVLATSCSPTARPLRDWDFTRPTAVIMGNEHSGVEPELLQMA 192

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ M G+I++ NVS AAA+ L       
Sbjct: 193 DGELYIPMYGMIQSFNVSVAAAIILSEAARQR 224


>gi|120434752|ref|YP_860439.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117576902|emb|CAL65371.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 246

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 103/253 (40%), Gaps = 21/253 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S +QK +  ++ +   + G+  V   LN+   ++  L              N+ 
Sbjct: 6   QIKLIKSLSQK-KFRNKHKLFVVEGLKGVREFLNSD-FELVSLYVVDGEFEEHQQFLNI- 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  +  + + KI   +   + LA+   P+       ++   L +VLD V DP N+G
Sbjct: 63  -------IDQKELKKISFLKTPQKALAVFKIPVKRD----LKIGDLTVVLDGVRDPGNLG 111

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F  + +I +       +  + +++ G+L  +     S+L + L         
Sbjct: 112 TIIRLCDWFGIENLICSLDTVDCYNPKVVQASMGSLTRVEIFY-SDLVNVLGAHK--NIP 168

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII---KALNV 265
             G   + +  +  + K DK  +++G E  G+  + Q   ++   +   G I   ++LNV
Sbjct: 169 VFGTMLNGEN-IYSKKKPDKALIVMGNEANGISEEIQALISNKITIPQFGEIQETESLNV 227

Query: 266 SNAAAVALYITQN 278
           + A ++ L   + 
Sbjct: 228 ATATSIILSEFRR 240


>gi|226289866|gb|EEH45350.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb18]
          Length = 565

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 133/364 (36%), Gaps = 97/364 (26%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           ++ ++++   +     +L R       +     KS   +   + F+YG   V AAL    
Sbjct: 163 ERYAQRLAEPRVQSVFELERPAHAQGHISITAPKSIPYTTAASEFIYGASAVLAALRCGR 222

Query: 66  RKIFQLLA---------------TKNALARLDWDANLPHPFPVKTVP---PQTIDKIVGK 107
           RK+++L                 T+  +        L     VK V    P+ +DK+ G 
Sbjct: 223 RKLYKLYIYETPDNVSLRLGRNPTREPMLDTIIKFGLAAGVCVKQVAGNWPKLLDKMSG- 281

Query: 108 EAVHQGLALETAPLLSPTLDAV-------------------------------------- 129
              H G  LE + L    +D++                                      
Sbjct: 282 GRPHNGCILEASQLPKLPVDSLLPVLSPSETHFNASVCHQSSEEAEVNGTSGRIPRAAYR 341

Query: 130 -------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                              + LD + DP N+GAI+RSA  F  D +I + R S   SAV 
Sbjct: 342 DENSPLAENLIMPTRYPFALFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRSSAPISAVA 401

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGF---------------QTIGLSSD---SKK 218
            K+++GA E+IP +  +N T  ++  H+ G+               QT+G  ++   S++
Sbjct: 402 IKASAGAAENIPILTTTNPTLFVKSSHTNGWKFFAAEAPAAANASQQTLGTPTEQVLSRR 461

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAA 269
            +  ++      L+LG+E +GL    ++ A     +              + +LNVS A+
Sbjct: 462 EVSTKLNEAPCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVDSLNVSVAS 521

Query: 270 AVAL 273
           A+  
Sbjct: 522 ALLC 525


>gi|317131314|ref|YP_004090628.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
 gi|315469293|gb|ADU25897.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
          Length = 263

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 98/259 (37%), Gaps = 7/259 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   +      +      +     L G   +  AL +  R +  +  T  A  +   
Sbjct: 6   SRDNPLVRDYVRLRENRAFRRETGRFVLEGARLLGDALESGVR-METVFFTGEACEKHPA 64

Query: 84  DANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDH 140
                      V  V      K+    A  QG+      L     LD +        L++
Sbjct: 65  LLASARDGGARVCLVGDAVAAKLADT-AAPQGVFAAAFMLDKAFALDKINLGGAYAALEN 123

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + DP N+GA+LR+A A    G++ +   +   +  + +++ GA+    + +  +L  AL 
Sbjct: 124 IRDPGNLGAVLRTAEALGLSGVLLSAGCADIYAPKVVRASMGAVFRTAFFQTEDLPAALS 183

Query: 201 KMHSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +   G QT+  L+  + + L Q      +   +G EG GL     +       + M G 
Sbjct: 184 LLREKGLQTLAALAGGTTRLLTQLDLRGGVVAAIGNEGAGLSDACVDACDPF-TIPMKGR 242

Query: 260 IKALNVSNAAAVALYITQN 278
            ++LN + AAA+ L+    
Sbjct: 243 AESLNAAAAAAIILWEIMR 261


>gi|217032394|ref|ZP_03437889.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
 gi|216945961|gb|EEC24577.1| hypothetical protein HPB128_25g42 [Helicobacter pylori B128]
          Length = 179

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 2/172 (1%)

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            + + K   HQG+  +    L+ +L  ++ +Q L+VL  + D  NIG I RSA     DG
Sbjct: 6   AQSLAKGGNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDG 65

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I       +   ++ +S+ G +  +P+  + N  D + ++ + GF  +G S      +E
Sbjct: 66  VILDFAKELAYEGIV-RSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQVE 124

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                 K AL LG+E +GL  K      ++  + M     +LNVS AA + +
Sbjct: 125 NLSL-KKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILM 175


>gi|225682465|gb|EEH20749.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb03]
          Length = 565

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/322 (22%), Positives = 119/322 (36%), Gaps = 97/322 (30%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLA---------------TKNALARLDWDANLPHPFP 92
           + F+YG   V AAL    RK+++L                 T+  +        L     
Sbjct: 205 SEFIYGASAVLAALRCGRRKLYKLYIYETPDNVSLRLGRNPTREPMLDTIIKFGLAAGVC 264

Query: 93  VKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-------------------- 129
           VK V    P+ +DK+ G    H G  LE + L    +D++                    
Sbjct: 265 VKQVAGNWPKLLDKMSG-GRPHNGCILEASQLPKLPVDSLLPVLSPSETHFNASVCHQSS 323

Query: 130 -------------------------------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
                                                + LD + DP N+GAI+RSA  F 
Sbjct: 324 EEAEVNGTSGRIPRAAYRDENSPLAENLIMPTRYPFALFLDGIRDPGNVGAIIRSAYYFG 383

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF----------- 207
            D +I + R S   SAV  K+++GA E+IP +  +N T  ++  H+ G+           
Sbjct: 384 VDAVIVSTRSSAPISAVAIKASAGAAENIPILTTTNPTLFVKSSHTNGWKFFAAEAPAAA 443

Query: 208 ----QTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--- 257
               QT+G  ++   S++ +  ++      L+LG+E +GL    ++ A     +      
Sbjct: 444 NASQQTLGTPTEQVLSRREVSTKLNEAPCVLMLGSEEQGLPRSIRQQADGAVVIPGAITA 503

Query: 258 ------GIIKALNVSNAAAVAL 273
                   + +LNVS A+A+  
Sbjct: 504 SNVEDRAGVDSLNVSVASALLC 525


>gi|254368751|ref|ZP_04984764.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121672|gb|EDO65842.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 218

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 10/213 (4%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI---VG 106
            +YG+H V + +     K   +    NA  +++   +      +K     +  ++   V 
Sbjct: 4   LIYGIHAVDSLVEANQAKEILVFKKSNANHKIEGIISKAESKGLKVTFIDSFKQLPGRVR 63

Query: 107 KEAVHQGL-ALETAPLLSPTLDAVR------NSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           K+A HQ + A+E     + + + +        +  +++LD+V DPHN GA +RSA +   
Sbjct: 64  KDANHQNIFAVEINDFKTYSENDIEFLVPQDKNAFILILDNVQDPHNFGACIRSAHSAGI 123

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           D II  K  S   +A + K A GA EH   + ++NL  A++K+   G   IGL+ ++   
Sbjct: 124 DFIIIPKDNSAPVNATVKKVACGAAEHTKIVVVTNLARAIEKLKQLGVWIIGLAGEADDS 183

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           L      D +A++ GAE  G+R +T+       
Sbjct: 184 LYSMNLVDSVAIVAGAEDSGMRQRTKAIVNPRV 216


>gi|226366171|ref|YP_002783954.1| rRNA methyltransferase [Rhodococcus opacus B4]
 gi|226244661|dbj|BAH55009.1| rRNA methyltransferase [Rhodococcus opacus B4]
          Length = 282

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 111/264 (42%), Gaps = 10/264 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           RN R +++ QS+       ++     + GV  ++ AL++    I  LL   +     DW 
Sbjct: 20  RNAR-FQQWQSYLTNRAKRTKAGRFLIQGVRPLNLALDHDW-PIESLLHRIDGPPLSDWA 77

Query: 85  ANLPHPFPVKT--VPPQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             L     V+   V  + + ++  K +   + +A+    +       ++++ L++V D  
Sbjct: 78  RELLASRSVEQIGVSAELMAELGEKTDTAPELIAVAKTRVPRLKELRLQSAPLVVVFDRP 137

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL-- 199
             P N+G ++RSA AF  D ++     +        ++++G+L  +P + +S++ + L  
Sbjct: 138 ASPGNLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVTVSSVDEILAF 197

Query: 200 -QKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
                + G     +G        ++         L++G E +G+    +    ++ ++ +
Sbjct: 198 RDARRASGTELHIVGTDETGSVTIDAHDFGGGTVLVIGNETRGMSAAWRNACDTVVNIPI 257

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
            G   +L   +A AVALY      
Sbjct: 258 GGAASSLGAPSAGAVALYEIARQR 281


>gi|91224994|ref|ZP_01260253.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
 gi|91190240|gb|EAS76510.1| tRNA methyltransferase [Vibrio alginolyticus 12G01]
          Length = 227

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + L+ V+ P+N+ A++R+A A     +       P +   L+ +++GA   +  
Sbjct: 16  RQTDLTLCLEEVHKPNNVSAVIRTADATGLHKV---HAIWPDKMRTLSHTSAGARNWVEV 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ ++ + G Q +  + SD+     +       A+ILG+E  G   + ++ A
Sbjct: 73  DTHDSIETAITELKAQGMQVLVTNLSDTAVDFREIDYTRPTAIILGSEKVGASEQAKQLA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+AV LY  Q   
Sbjct: 133 EQDIIIPMVGMVQSLNVSVASAVILYEAQRQR 164


>gi|241951390|ref|XP_002418417.1| 21s rRNA [GM2251] 2'o-methyltransferase; mitochondrial large
           ribosomal RNA ribose methylase, putative; ribose
           methyltransferase, putative [Candida dubliniensis CD36]
 gi|223641756|emb|CAX43718.1| 21s rRNA [GM2251] 2'o-methyltransferase [Candida dubliniensis CD36]
          Length = 440

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 117/339 (34%), Gaps = 66/339 (19%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +  +K  ++  + +      L R  + +K   S        +     +++G H V A 
Sbjct: 97  MKIAHEKSLQEKANEERERARALAREAKGFKTSNSNYDTVVDRNDTIFDYVFGTHPVKAV 156

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L    R++  L    N    +   A   +    K +  +    I+ K  VH G+ L+T  
Sbjct: 157 LAAGKRRMLDLYTFNNDDPDIVELAVEKYGITPKRLKDKNALNILCKNGVHNGVVLKTNK 216

Query: 121 LLSPTLDAVRNS------------------------------------QLLMVLDHVNDP 144
           L  P +  V ++                                     L + LD + DP
Sbjct: 217 LEIPYIKEVGHAENGEYKLAIESLEDDSVNIETKTVIRDGNEEVEELYPLSLYLDEITDP 276

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G+ILRSA  F  D I+     +     V  K+++GAL+ I   +  +    +  +  
Sbjct: 277 QNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIYQTGSSLKFIDSVRQ 336

Query: 205 WGFQTIGLSSD--SKKPLEQE------------------------IKNDKIALILGAEGK 238
            G+  I  S      KP E+                         ++   + LI+G+EG 
Sbjct: 337 SGWHVISTSGRPTGAKPREEVNDDLEIPEPHLKNKFIELQDLRTILRKTPVMLIIGSEGS 396

Query: 239 GLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVAL 273
           G+R   +  +  +  +         + +LN   A  V L
Sbjct: 397 GVRTNMKMRSDYLVGIPKLRRNDNIVDSLNAGVATGVIL 435


>gi|282890318|ref|ZP_06298846.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499700|gb|EFB41991.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 254

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 13/253 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +    Q S +  + +++ L G   ++         I +LL     L   +  A
Sbjct: 15  QNPLVKHLVKIRQNSDYRQEHQSVVLEGSTVIAEVAKTHP--IKRLLTVDLCLIPSEISA 72

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  V    +DKI G +    G+  E        L  +R+   L+VL+ +NDP 
Sbjct: 73  E-----EILQVDQAILDKISGMQHSP-GVLAEVKMPSPSPLKNIRS---LLVLNQINDPG 123

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++RSA+AF  +GI    +     +    +SA GA   +PY R  +L +  + +   
Sbjct: 124 NLGTLIRSALAFGWEGIFIVNQSCDIFNEKAIRSARGATFRLPY-RKGDLQELEEILTHN 182

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
              T         P++     +K+AL+L  E +G+   T    +    + M G +++LNV
Sbjct: 183 KLTTWVADVSG-TPMQDITPPEKVALVLSNEARGVSSSTHPLFSQHVTIPMSGKMESLNV 241

Query: 266 SNAAAVALYITQN 278
           + A A+ L+  + 
Sbjct: 242 AVAGAILLHYLKK 254


>gi|269838434|ref|YP_003320662.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787697|gb|ACZ39840.1| tRNA guanosine-2'-O-methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
          Length = 190

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEH 186
           A R   L +V+++V+DPHNI A+LRS  A     +     Y+  E   L++ S++ A++ 
Sbjct: 6   ARRQPDLTVVIENVHDPHNISAVLRSCDAVGLLTVHLV--YTIEEWPELSRVSSASAVKW 63

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  +R  ++    Q + + GF        +    L        +AL+ G E +G+  +  
Sbjct: 64  LDIVRHESIEACYQALRAQGFTIYATHLSAASRDLYDLDLTGPVALVFGNEHRGVSDEAV 123

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LN+S A AV+LY      
Sbjct: 124 ANADGSVVIPMMGMVQSLNISVACAVSLYEALRQR 158


>gi|78212412|ref|YP_381191.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
 gi|78196871|gb|ABB34636.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
          Length = 249

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 28/248 (11%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + L G H +   L   +    +++AT+         A       ++ V  + + +     
Sbjct: 1   MLLEGTHLLQEVLRQGNAP-DEIIATEAWWQGHSALAERCVQARLRIVTDEVL-RAALTT 58

Query: 109 AVHQGLA----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               G+A    L+  P + P LD       L+VLD + DP N+G +LR+A+A   + +  
Sbjct: 59  VTPDGVACLSPLDRLPAVPPELD------FLLVLDRIQDPGNLGTLLRTALAADVNAVW- 111

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGL---- 212
                      + ++++GAL  +P+ R        IS L   L+++ + G Q +      
Sbjct: 112 MGAGVDPLGTKVLRASAGALLQLPHQRFGPSEAMAISQLRQGLKQLAALGVQVVATLVPD 171

Query: 213 -SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            +  S  P          AL+LG EG GL P  Q   T    L     +++LNV+ +AAV
Sbjct: 172 STQASPIPYWDLDWTLPTALVLGTEGAGLHPDLQACCTHAVTLPHSARVESLNVA-SAAV 230

Query: 272 -ALYITQN 278
             L   + 
Sbjct: 231 PLLLERRR 238


>gi|152967110|ref|YP_001362894.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151361627|gb|ABS04630.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 264

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 101/263 (38%), Gaps = 22/263 (8%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPH 89
           M+S   +S   S+       G   V  A+   +    +L AT  A  R       A    
Sbjct: 1   MRSLTGRS-ARSRHGRFLAEGPQAVREAVAGGA--ALELYATAEAAQRYPEVLAAAATAG 57

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNI 147
                 V  + +  +       QGL     P  + TLD V     +L+ VLD V DP N 
Sbjct: 58  GPRTWLVTDEVLAAMTDT-VTPQGLVA-VCPTTTSTLDDVLAARPRLVAVLDRVRDPGNA 115

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G +LR+A A   D ++ T+      +    +S +G+L H+P +    L DA+  +   G 
Sbjct: 116 GTVLRAADAAGADAVVLTEGSVDPFNPKCVRSTAGSLFHLPVVVGVPLADAVTALRRAGS 175

Query: 208 QTIGLSSDS------------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             +    +             +  ++        A + G E  GL    +  A ++  + 
Sbjct: 176 TVLAADGEGDLDLDDLADAAARGVVDGVDLRRPTAWVFGNEAAGLDAAGRGLADAVVRVP 235

Query: 256 MPGIIKALNVSNAAAVALYITQN 278
           + G  ++LN++ AA V LY +  
Sbjct: 236 LHGRAESLNLATAAVVCLYASAR 258


>gi|15606763|ref|NP_214143.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
 gi|3915169|sp|O67577|TRMH_AQUAE RecName: Full=tRNA guanosine-2'-O-methyltransferase; AltName:
           Full=tRNA [Gm18] methyltransferase
 gi|75765771|pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING
           Enzyme
 gi|2983982|gb|AAC07528.1| rRNA methylase SpoU [Aquifex aeolicus VF5]
          Length = 211

 Score =  160 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 4/169 (2%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           L LE        +   R   L++  D+V + HN  AI+R+  A     +     ++  + 
Sbjct: 6   LVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGV--LYLYYYHAEGKK 63

Query: 174 AVLAK-SASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIAL 231
           A + +    G+ + +   ++ N    L +  + GFQ +    S       +        L
Sbjct: 64  AKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVL 123

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G E +G+ P+  E A     + M G+ ++LNVS A  + LY  Q   
Sbjct: 124 VVGNELQGVSPEIVEIADKKIVIPMYGMAQSLNVSVATGIILYEAQRQR 172


>gi|194695936|gb|ACF82052.1| unknown [Zea mays]
          Length = 209

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            + ++VLD + DP N+G ++RSA AF  DG+          +    ++A GA   +P + 
Sbjct: 44  PKRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVS 103

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDKIALILGAEGKGL 240
            +   D    +  +  + +    +S              L   + N+ + L+LG+EG GL
Sbjct: 104 GT-WHDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCLVLGSEGNGL 162

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +T +    + ++ M G  ++LNVS A  + L++ Q
Sbjct: 163 SAETLQAC-ELVNIPMEGTFESLNVSVAGGIFLFMLQ 198


>gi|212705009|ref|ZP_03313137.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
 gi|212671561|gb|EEB32044.1| hypothetical protein DESPIG_03077 [Desulfovibrio piger ATCC 29098]
          Length = 196

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 4/153 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-AKSASGALEHIP 188
           R   L +VL +++DPHN+ AI RS  AF  D +     Y+ +   VL  K+++ A + + 
Sbjct: 20  RQPDLTLVLANIHDPHNVSAIYRSCDAFGVDKVHLY--YTDTPFPVLGRKTSASARKWVE 77

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R  +  +    + +   Q +  + + + KPL         A+I+G E  G+  +    
Sbjct: 78  SVRHRDRQELETSLRAQNMQILATTFTPTAKPLRTWDFTRPTAIIMGNEHSGVNEELISM 137

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A    ++ M G+I++ NVS A+A+ L       
Sbjct: 138 ADGELYIPMYGMIQSFNVSVASAIILSEACRQR 170


>gi|258512124|ref|YP_003185558.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478850|gb|ACV59169.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 256

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 3/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R S + + ++ V+D HN  AILRSA AF    +   +   P   +       GA + +  
Sbjct: 45  RTSYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFHPSK--GVTQGAHKWLTL 102

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R+ ++  A+  +H+ GFQ       +  +P++        A++ G E  G+ P+ +E A
Sbjct: 103 QRMPDIGRAIDALHARGFQVYATDLGEGAQPIDAVDLARPTAILFGNEKDGVSPEARERA 162

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               ++ M G +++ NVS AAA+ALY     
Sbjct: 163 DGRFYIPMAGFVQSFNVSVAAAIALYELTRR 193


>gi|71065108|ref|YP_263835.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71038093|gb|AAZ18401.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
          Length = 268

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 112/275 (40%), Gaps = 22/275 (8%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN--PSRK 67
           E I S K++            K ++S   ++R   +     + GVH + AAL +  P  +
Sbjct: 7   ELITSDKNTTV----------KLVKSLLTQARQRKKHGLTVIEGVHLIDAALRSDYPFDQ 56

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL-ALETAPLLSPTL 126
           I    +T            LP   P+ T+     + I        G+  +    + +P+L
Sbjct: 57  ILVSESTHKNPEVQQILTRLPTYTPILTLADALYESIRSLGT---GIDIMAMIKVPAPSL 113

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             +      ++L+ V D  N+G +LR+A A     I+ T   + + S    ++  GA   
Sbjct: 114 SMINED--CLILNDVQDSGNVGTLLRTAAAVGIKNILCTSATAQAWSPKTLRAGMGAQFA 171

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +      ++ + L  + +        SS +   + Q      IA I+G EG+G+  +  +
Sbjct: 172 LNIYEGLSVQEVLDHVET---PLFATSSHTDTVIYQHDLKSPIAWIMGHEGQGVCDELMQ 228

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            AT +A L  P   ++LNV+ A ++ LY T     
Sbjct: 229 CATPIA-LPQPNGQESLNVAIAGSLCLYETLRQRN 262


>gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 265

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 95/257 (36%), Gaps = 7/257 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATKNALARLDW 83
           ++   K+++S  +K +           G+  ++ A         +F   +T    A L  
Sbjct: 9   SNPLVKRVRSLREK-KFRKAEGLFLAEGLRILTEAREEGVLPEMLFHAGSTHPLAAELIA 67

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVN 142
                    ++T  P  + KI GK+   Q +       L+P     R  S + +V   + 
Sbjct: 68  AMEAAGGDVIET-TPDILAKISGKD-NPQAVVGVYRDRLTPLAKLDRGKSDIWIVAQSLR 125

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILR+  A    G+I         S    +++ GAL      +     + +  +
Sbjct: 126 DPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRASMGALFTQSITQAR-WGEFMHWL 184

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                + IG S  +    ++        L++G E +GL    +     +  + M G   +
Sbjct: 185 REGPGELIGTSLKATHDYQEPRYQSPSFLLVGNEAQGLPESYEAECDLLVKMPMLGKADS 244

Query: 263 LNVSNAAAVALYITQNH 279
           LN + A AV  Y   N 
Sbjct: 245 LNAAVACAVMAYELLNQ 261


>gi|189464794|ref|ZP_03013579.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
           17393]
 gi|189437068|gb|EDV06053.1| hypothetical protein BACINT_01138 [Bacteroides intestinalis DSM
           17393]
          Length = 175

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   +++  + +    L++VLD++   HNIG++ R++ AF  + I      +   
Sbjct: 4   LKITELNRISIEEFKEAEKLPLMVVLDNIRSLHNIGSVFRTSDAFRVECIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKI 229
              + K+A GA   + +  + N  +A+  +   G+    +  ++    L++    +  K 
Sbjct: 64  HPEMHKTALGAEFTVDWKYVDNCVEAVDNLKKEGYTVYSVEQAEGSIMLDELSLDRTKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG++ +  + +     +   G   +LNVS  A + ++
Sbjct: 124 AVVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|33239873|ref|NP_874815.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237399|gb|AAP99467.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 229

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 15/173 (8%)

Query: 120 PLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSP 170
           PLL    D +      R S L ++ + V  PHN+ AILR+  A        +        
Sbjct: 2   PLLPRRFDRIKSVLNRRMSNLTVLAEEVEKPHNLSAILRTCDAIGILQAHAVFKQ----- 56

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKI 229
           S+      +A G+ + +  ++  N+  A++ +   GF+  G + +   K           
Sbjct: 57  SKIPTFNSTAQGSQKWVKLVKHPNIEVAIKSLKGEGFKIYGTNLNEQAKDYRLFDYKGPT 116

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A +LGAE  GL             + M G++++LNVS A+A  L+       K
Sbjct: 117 AFVLGAEKWGLSQLATSLVDESIFIPMRGMVQSLNVSVASATLLFEALRQREK 169


>gi|322835058|ref|YP_004215085.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
 gi|321170259|gb|ADW75958.1| tRNA guanosine-2'-O-methyltransferase [Rahnella sp. Y9602]
          Length = 232

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + ++ V+ PHN+ A++R+A A     I     +  +    L  SA+G+   +
Sbjct: 14  AARQPDLTVCMEQVHKPHNVSAVIRTADAVGVHEIHAV--WPTTRMKTLVSSAAGSNSWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + DA+ KM + G Q +  + S+               ++LG E  G+ P+   
Sbjct: 72  QVKTHKTIQDAVAKMKAKGMQILATNLSEKAVDFRAIDYTRPTCILLGQEKTGITPEALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A S   + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADSDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|269925885|ref|YP_003322508.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789545|gb|ACZ41686.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 267

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 107/261 (40%), Gaps = 7/261 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R+++  K  +   ++ R         + G   +  A+    + +  L + +  + R   
Sbjct: 4   SRSNQQVKWFRLLRER-RGRKASGAFLVEGPRAIQQAMVAGHKPLKVLYSPEVVVRRDVV 62

Query: 84  DANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLD 139
           +  L       P+  V    +  +       QG+      L     + V  N+  ++VLD
Sbjct: 63  NKVLGQIGSETPLLEVSEDVLSSVSDT-VTSQGIIAAFELLSWHPREGVNANAGPVLVLD 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V+DP N+G +LRSA A     ++ ++  +   +    ++++GAL  + +  +    +  
Sbjct: 122 RVSDPGNVGTLLRSAAAAGSAAVLLSEGSADPYNPKAVRASAGALFAVSFAVLP-WEEIH 180

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           + +H+   +     SDS +           A+++G+E  GL  +    +T    + M   
Sbjct: 181 EVLHTVPKRFAAYYSDSSQAYYLADLCPPCAILVGSEASGLSHQALSLSTHNLWIPMQNN 240

Query: 260 IKALNVSNAAAVALYITQNHF 280
           I++LN + A ++ L+ ++   
Sbjct: 241 IESLNAAVAGSILLFESRRQM 261


>gi|123965718|ref|YP_001010799.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200084|gb|ABM71692.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 224

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHI 187
            R   L ++++ VN PHN+ AILR+  A    +     KR    E      +A G+ + +
Sbjct: 17  CRMENLTVLVEAVNKPHNLSAILRTCDAAGVFEANFICKR---DEVKTFNSTAQGSQKWV 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                     A+  +   GF+  G +  DS          +    +LGAE  GL  +   
Sbjct: 74  KLNNHETTISAVSHLKKKGFKLYGTTLNDSSTDYRNFDYAENTCFVLGAEKWGLSDELIS 133

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + M G++++LNVS AA++ L+      
Sbjct: 134 KVDESIFIPMTGMVQSLNVSVAASILLFEAIRQR 167


>gi|222149594|ref|YP_002550551.1| RNA methylase [Agrobacterium vitis S4]
 gi|221736576|gb|ACM37539.1| RNA methylase [Agrobacterium vitis S4]
          Length = 279

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 101/258 (39%), Gaps = 16/258 (6%)

Query: 39  KSRHTSQPENLFL-YGVHTVSAALNNP--SRKI--FQLLATKNALARLDWDANL-PHPFP 92
           + R  +  E  F+  G   +   L      R I    LL  +N +A L    +  P   P
Sbjct: 22  RERDLTGREGRFIAEGTVVLRMLLAAHLAGRGICAEALLLLENRVAGLQPLLDQWPDDLP 81

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           V       +D I G   +H+G+       TAP  +  + ++    L++V   +++  N+G
Sbjct: 82  VYVASAAVLDAIAGFH-LHRGVLALGSRLTAPDATQLIASLPQRALVLVGCGISNHDNVG 140

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+ R+A  F  D ++  +           + + G++  +PY R  +    L  + + GF 
Sbjct: 141 AMFRNATGFCADAVLLDETSCDPLYRKALRVSVGSVLTMPYAREHSAIALLSALDAAGFL 200

Query: 209 TIGLSSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              L+      +           ++AL++G EG+GL             +     + +LN
Sbjct: 201 VAALTPSGTTEIGDIASGLGGQQRLALVVGTEGEGLPADVLARF-MTVRIAQSPQLDSLN 259

Query: 265 VSNAAAVALYITQNHFAK 282
           +  A+ +AL+       K
Sbjct: 260 LGTASGIALHSAARALGK 277


>gi|330844482|ref|XP_003294153.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
 gi|325075433|gb|EGC29321.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
          Length = 224

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 26/225 (11%)

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR----- 130
           +A+  +   AN     P+  +    ++    K   HQG+ L+ +PL    +D ++     
Sbjct: 4   DAIKEIAEKAN-ELKIPIIAIKNNIMES-FSKNKPHQGVILDCSPLTVLNIDFLKPFKAN 61

Query: 131 ----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                  L +VLD + DP N+G I+RS   F+ DGI+ + + S   +   +K +SGA+E+
Sbjct: 62  KNTKRYPLWIVLDELWDPQNVGTIIRSCSFFNVDGIVISDKCSNPITPTASKCSSGAVEN 121

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD----------SKKPLEQEIKNDKIALILGAE 236
               +  ++   L      G+  +  S D          +   +     +    LILG E
Sbjct: 122 YLVHKSESINGFLLSSKKNGWNIVATSVDDNSSEDSSSPANYNITDVKLDQPTILILGNE 181

Query: 237 GKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQN 278
           G G+             +   G    I +LNVS +  + ++   N
Sbjct: 182 GFGVHKSIINQCDKTIRI--SGGNKKIDSLNVSVSTGILIHSLLN 224


>gi|302550200|ref|ZP_07302542.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302467818|gb|EFL30911.1| rRNA methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 271

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/250 (22%), Positives = 96/250 (38%), Gaps = 26/250 (10%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           RDY  +     + +           G   +  A          LL+ K      D    L
Sbjct: 16  RDYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKEAGYEMRSMLLSAKWVDVMRDVIDEL 75

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           P   PV  V P+  +++ G   VH+G     +  PL +   D +R ++ +++++ VND  
Sbjct: 76  P--APVYAVSPELAERVTGYH-VHRGALASMQRKPLPTAA-DLLRRTRRVVIMESVNDHT 131

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGAI RSA A   D ++ +   +        K + GA+  +PY R  +      +    
Sbjct: 132 NIGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARPDSWPRVWSR---- 187

Query: 206 GFQTIGLSSDSKKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATSMAHL 254
                     S+   +   ++           D++AL+LGAEG  L  +    A     +
Sbjct: 188 -----SARPASRSSPDPRREDPPPRRGRPHTMDRVALMLGAEGDALSTQALVAADEWVRI 242

Query: 255 HMPGIIKALN 264
            M   + +LN
Sbjct: 243 PMSHGVDSLN 252


>gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis]
 gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis]
          Length = 342

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 109/280 (38%), Gaps = 33/280 (11%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA------LNNPSRKIFQLLATKNALA 79
           ++   K      Q S +     +  + G   +         L   + ++  L+    A  
Sbjct: 61  SNPFIKHCVKLRQSSPYRHAHGSALVVGTTPIREICKFQKSLKEETVEMECLILPDKAKV 120

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL-DAVRNSQL---- 134
               D++      V  +  + + ++   E++ + +AL   P     + D  +++      
Sbjct: 121 PEGLDSSSTRTLRVSALVMKRLSQLQSTESI-EAIALMKFPTSYFVVGDHQKDADFRKWF 179

Query: 135 -----LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                ++VL+ + DP N+G ++RSAVAF   GI          +    K++ GA   +P 
Sbjct: 180 PSPHRILVLEGIQDPGNLGTLVRSAVAFRWGGIFLLPGCCDPFNDKALKASRGASFQVPI 239

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------KIALILGAEG 237
           +  S     L+ +    FQ   L+       EQ   ++             I L+LG EG
Sbjct: 240 VSGSWHH--LEALKDE-FQMKMLAGHPASDDEQTPVSELSQGFADSLADIPICLVLGNEG 296

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +GL  K+ +    +  + M    ++LNV+ A  + LY+ Q
Sbjct: 297 QGLSEKSLQEC-QLVSIPMARNYESLNVAVAGGIFLYMLQ 335


>gi|332827938|gb|EGK00660.1| hypothetical protein HMPREF9455_02934 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 252

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 17/256 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S  +K +  S+       G   VS  L  P  K   L+A    L+ L    N+   
Sbjct: 9   KYIRSLKEK-KFRSEYGTFIAEGNKLVSDLL--PYMKCQLLVALPGFLSEL----NITDI 61

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  V    + +    +   Q LA+   P     +D   N+QL++ LD + DP N+G I
Sbjct: 62  EEVIEVNESQLAQASFLQNPQQVLAVFYQPKHPEAIDI--NNQLVLALDGIQDPGNLGTI 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I  T   +   +  + ++  GAL  +    + +L   L   ++      
Sbjct: 120 VRLADWYGIKHIFCTHDTADIYNPKVVQATMGALARVTIHHV-DLAGFLD--NNKHIPVY 176

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GII--KALNVS 266
           G   D K   EQ+I    I +++G EG G+RP+ ++  T   ++     G    ++LNV+
Sbjct: 177 GTLLDGKNMYEQDITPHGI-IVMGNEGNGIRPEIEKRITKKLYIPNYPEGNTTSESLNVA 235

Query: 267 NAAAVALYITQNHFAK 282
            A A+     +    K
Sbjct: 236 IATAIVCAEFRRRSNK 251


>gi|300814789|ref|ZP_07095032.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511097|gb|EFK38354.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 223

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 88/237 (37%), Gaps = 14/237 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G      A+   +     +        + +   +L         P    
Sbjct: 1   YRYEENLFLVEGPIVFKEAIKYMAPSYIAI-----RDDKEEQYKDLLGDRDYFIFPSHLF 55

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +KI   ++  QG+    +            S   + LD ++D  N+G I+R+A AF+  G
Sbjct: 56  NKISDSQS-PQGI---ISYFPMVHKKFQEKSGKFLYLDKISDAGNMGTIIRTADAFNLSG 111

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I ++      +    ++   ++  +P   +        ++    F+ I  + +  KP++
Sbjct: 112 VIISEDSCDIYNPKTIRATMASIFRVPIYFLKE-----DELIKNNFKIIVSALEDSKPIK 166

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +   +  + L++G E  G+  K  E A     + +   + +LN   AA +  Y  + 
Sbjct: 167 ECDLSGDLILVIGNEAHGVSQKILERANLKVKIPIRDSVDSLNAGVAAGIFAYEMRK 223


>gi|91788542|ref|YP_549494.1| tRNA/rRNA methyltransferase SpoU [Polaromonas sp. JS666]
 gi|91697767|gb|ABE44596.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas sp. JS666]
          Length = 260

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 102/256 (39%), Gaps = 14/256 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLD 82
            R++   K+++  +Q S    +   ++L G H   AAL    +    + +      A ++
Sbjct: 13  SRDNTLIKELRKLSQDSTAYRKQGRVWLEGDHLCRAALARGKKPTLAIFSESFWPSAPVE 72

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           W            +P   + +I G E+  + G  LE      P    +      ++LD V
Sbjct: 73  WSRAAIKNI---VIPDALLPEISGLESPARMGFVLEL-----PAASGLEAGAASVILDRV 124

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G+ILRSA AF    II  K  +   S  + ++  GA   +  +           
Sbjct: 125 QDAGNVGSILRSAAAFGFGQIIALKGTAALWSPKVLRAGMGAHFALQLVEGVEPA----A 180

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + +     +  SS     L Q+      A  +G EG+G+       +     +  PG  +
Sbjct: 181 LAALTVPIVVTSSHQGSFLHQQPLPRPCAWAMGHEGQGVSDDLMARSALKVRIDQPGGEE 240

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+ AAA+ LY + 
Sbjct: 241 SLNVAAAAAICLYASA 256


>gi|157963692|ref|YP_001503726.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|157848692|gb|ABV89191.1| tRNA guanosine-2'-O-methyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 228

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  +NI A+LR+A A     +     +S  E  V   +ASG+ + +  
Sbjct: 16  RQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV--WSELEMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A++       Q +  + SD+              +I+G E  G+ P+    A
Sbjct: 74  RVHQSMAQAVEAFRDQDMQILATTFSDTAVDFRAIDYTKPTVVIMGNERDGVSPEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA+ +Y  Q   
Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQR 165


>gi|237821623|ref|ZP_04597468.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 135

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G I+R+A A    G+I + + +   S    +S  G+  H+P  R+++    L + 
Sbjct: 1   DPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSHFHLPIYRMTSQA-LLDET 59

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                  +  +        +E+ + +   L++G EG+G+ P   E+A  + H+ M G  +
Sbjct: 60  KKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKGQAE 119

Query: 262 ALNVSNAAAVALY 274
           +LNV+ AA + ++
Sbjct: 120 SLNVAVAAGILIF 132


>gi|206895377|ref|YP_002246755.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737994|gb|ACI17072.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 253

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 36/275 (13%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ KI                  K+++      +   +     L G   + A 
Sbjct: 1   MRFIESPKNPKI------------------KEIKKLLSSKKARDEKGQFVLEGPKAIEAY 42

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           + +   K+ +LL +K+A      +A       V    P  ++  V   A  QG+    A 
Sbjct: 43  VQSGG-KVLELLYSKDAKDLPKVNA------VVTQCAPGVMEA-VSDVAGDQGVIA-IAQ 93

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T   V   + ++VL+ + DP N+G ILR+A AF   G+I T   +   +  + ++ 
Sbjct: 94  KRDWTPQQVLKRKRIVVLEQLQDPGNLGTILRTAAAFDY-GVILTTGSADVYNPKVVRAL 152

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +G     P++ ++   +AL+         +     S+KP          A++LG EG+GL
Sbjct: 153 AG-NFLAPFVYVTG-GEALELCK--NLFVVTTYKSSEKP--DFKWRQPFAIVLGNEGQGL 206

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               +  A + A +     +++LNVS  +A+ ++ 
Sbjct: 207 TESWRRIAKANAWIP--SKVESLNVSVTSAILMWE 239


>gi|190345104|gb|EDK36926.2| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 395

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 122/321 (38%), Gaps = 69/321 (21%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           K++ Y+  R + R+    +           P   ++YG H V AAL    R  F  L   
Sbjct: 72  KEAEYSSQRESSRETTSYRPTGMS----RNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127

Query: 76  NALARLDWDANLPHPFPVKTVPPQ---TIDKIVGKEAVHQGLALETAPLLSPTLDAVR-- 130
           N         +      +  V  Q    ++ I+    VH G+ LET PL  P +  +   
Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQSKGDMN-ILADNGVHNGVVLETKPLEIPFIHELGVC 186

Query: 131 ------------------------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                                            L + LD + DP N+GAI+R+A     D
Sbjct: 187 DPEAEEYDVSITNEILNSQTPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAYYMGVD 246

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+  +  +     V AK+A+G+L+ +   + S+    ++++   G+  I  SS + + L
Sbjct: 247 FIVVPEHDTARLGPVAAKAAAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQTSESL 306

Query: 221 EQEIKND-------------------------KIALILGAEGKGLRPKTQETATSMAHLH 255
           +Q+ K+                           + L++G+EG G+R   Q  +  +  L 
Sbjct: 307 QQDQKSKHQKVQQQLGTKFIDPSELSTIANESPVLLVMGSEGAGVRTHLQLRSDYLVGLS 366

Query: 256 M----PGIIKALNVSNAAAVA 272
                 GI+ +LNVS A A+ 
Sbjct: 367 KGREDEGIVDSLNVSVACALM 387


>gi|332828668|gb|EGK01360.1| hypothetical protein HMPREF9455_02193 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 175

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                   + L+++LD+V   +NIG++ R++ AF  + +      +   +A + K+A GA
Sbjct: 15  DEFKDAEKTPLVVILDNVRSLNNIGSVFRTSDAFLIESVYLCGITACPPNAEIHKTALGA 74

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGL 240
              + ++   +  DAL+ +   GF    +    +  +  E+  DK    A++LG E KG+
Sbjct: 75  ENSVDWVYYEDTRDALRGLKDRGFTICAIEQAERSIMLDELVVDKAKGYAVVLGNEVKGV 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           R +  +       +   G   +LNVS AA + ++       
Sbjct: 135 RQEVVDLCDCCIEIPQYGTKHSLNVSVAAGIVIWEFFKQLG 175


>gi|120601954|ref|YP_966354.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120562183|gb|ABM27927.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris DP4]
          Length = 196

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 2/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +VL +++DPHN+ AI RS  AF    +        +  A+  K+++ A + +  
Sbjct: 20  RQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLY-YTDTAFPALSGKTSASARKWVDT 78

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +R  +    +  + + G Q +  S     KP+         A+I+G E  G+  +  +  
Sbjct: 79  VRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVDVV 138

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ M G+I++ NVS AAA+ L       
Sbjct: 139 DGEVYIPMYGMIQSFNVSVAAAILLSEASRQR 170


>gi|326771653|ref|ZP_08230938.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
 gi|326637786|gb|EGE38687.1| 23S rRNA methyltransferase [Actinomyces viscosus C505]
          Length = 310

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 15/240 (6%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHP 90
           +   N +++H        + G   V  A+ +   ++  +  T+ AL R    WD  +   
Sbjct: 55  LSRRNARAKHRR----FLVEGPQGVREAVRHVPGRVLDVYLTEAALERHSEIWDEAVTAG 110

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRNSQLLMVLDHVNDPHN 146
             V     Q +D +       QGL    A   +        A+  ++L+ VL    DP N
Sbjct: 111 LYVHVTTQQVMDAMSPDA---QGLLAVVATEEATGSEALAAALEGARLVAVLTQAQDPGN 167

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G I+R+A A   D ++  +      +  + +S +G+L H+P +    L DA+  +H+ G
Sbjct: 168 AGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVTALHNAG 227

Query: 207 FQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +         L +   +     A +LG E  GL P+    A ++  + + G  ++LN
Sbjct: 228 LTVLAADGRGDFDLFEVESLLEAPSAWLLGNEAHGLPPEALSRADAVVSIPIYGKAESLN 287


>gi|259906722|ref|YP_002647078.1| tRNA guanosine-2'-O-methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224962344|emb|CAX53799.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283476505|emb|CAY72320.1| putative RNA methylase [Erwinia pyrifoliae DSM 12163]
 gi|310765945|gb|ADP10895.1| tRNA guanosine-2'-O-methyltransferase [Erwinia sp. Ejp617]
          Length = 231

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       P S    +  +A+G+   
Sbjct: 14  AARQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEV---HAVWPGSRMRTMVSAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ +A+  +     Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRSIAEAVACLKGQNMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITREAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADGDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|293192348|ref|ZP_06609459.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
           F0309]
 gi|292820263|gb|EFF79257.1| putative 23S rRNA methyltransferase [Actinomyces odontolyticus
           F0309]
          Length = 246

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 16/242 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVG 106
           + + G   V     +    +  +   ++A        ++       V  V  +    + G
Sbjct: 1   MLVEGPQAVRELAAHRPDAVRDVYVREDAWETHADVVDVARRATRWVHPVTAEVSAALSG 60

Query: 107 KEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                QG+    +   LS  L      + ++VL    DP N+G I+R+A AF   G++  
Sbjct: 61  DS---QGICAVASLDALSRELPEPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAV 117

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                + S  + +S++G++ HIP   + +  DA   +H      +G S  +      ++ 
Sbjct: 118 AGTVDAASPKVVRSSAGSVFHIPVCVVPSFADARALIHGRSAALLGTSGGAASISLSDLL 177

Query: 226 NDKI----------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              +          A + G E +GL          +  + M G  ++LNV++AAA  L+ 
Sbjct: 178 VQGVSARSRLSQSHAWVFGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLFA 237

Query: 276 TQ 277
           +Q
Sbjct: 238 SQ 239


>gi|169334564|ref|ZP_02861757.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259281|gb|EDS73247.1| hypothetical protein ANASTE_00967 [Anaerofustis stercorihominis DSM
           17244]
          Length = 252

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 111/251 (44%), Gaps = 16/251 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + ++  K ++S  +K ++  +     L G+  V  A+ N +  I  ++ T+      D+
Sbjct: 12  SKTNKIIKLVKSL-EKKKYQDKYGLYVLEGIKFVKDAVINKNHIIKYIITTEEYTE--DY 68

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           D  L             I K +      QG+           ++ +  +  ++ LD V D
Sbjct: 69  DDALEVD--------NEIFKYISSTKTPQGVLA-VLETKYCDINDINKNDNILYLDTVQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++RS+V    D +I     SP  S  + ++++G++ +   I   +    L+ + 
Sbjct: 120 PENVGGLIRSSVCTDFDAVILNSSASPFLSKAV-RASAGSIINTKIILDEDYK-ILKTLK 177

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             GF  I  + + K+ +    KN+   LI+G EG G+  +  + AT    + M G  ++L
Sbjct: 178 EKGFDIIASTLNGKEDITLNKKNN--VLIVGNEGNGISDECLKYATKEVKIPMSGKCESL 235

Query: 264 NVSNAAAVALY 274
           N + + ++ +Y
Sbjct: 236 NANVSGSILMY 246


>gi|183221427|ref|YP_001839423.1| putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911515|ref|YP_001963070.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167776191|gb|ABZ94492.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779849|gb|ABZ98147.1| Putative tRNA guanosine-2'-O-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 285

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 104/273 (38%), Gaps = 14/273 (5%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR- 80
           K+   + +++ + +        SQ + +F+ G   +   L     K+ ++L  +N     
Sbjct: 14  KVSVRNAEFQIISALRTNRTKRSQEKEVFVEGTEPIKQLL-AARWKVTRILYRENVPLSS 72

Query: 81  -LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------NS 132
                 +L        V  +   ++  KE   + L          T+ + +       N 
Sbjct: 73  WAKEVLSLHKEAKQFEVKEELYLELSEKETPSELLITAKIKESELTIQSKKTEQQSNQNK 132

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              ++ D  +D  N G++LRSA AF  D +             + +S+ G L H   + +
Sbjct: 133 PFYLLFDRPSDLGNFGSLLRSADAFQVDCVFVIGHSIDVYDPKVIRSSLGTLFHTKLVFV 192

Query: 193 ---SNLTDALQ-KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +L   +Q +    G   +G  S     L +      I LILG E KG+  + Q   
Sbjct: 193 NEFESLVRFVQMEKKRNGLVVVGSDSSGDSNLREVSIQTPILLILGNEKKGMSVQLQSIC 252

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +  + M G++ +LNVS A ++ L+    +  
Sbjct: 253 DRIVKIPMLGVVNSLNVSCAGSILLWEVTRNRN 285


>gi|193212564|ref|YP_001998517.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
           8327]
 gi|193086041|gb|ACF11317.1| tRNA guanosine-2'-O-methyltransferase [Chlorobaculum parvum NCIB
           8327]
          Length = 221

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 3/156 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L   R + L +V+D+VN PHN+ AI+RS  A     +    R S   +     +A+GA  
Sbjct: 13  LLERRQTDLTLVMDNVNKPHNLAAIIRSCDAVGIHQVHAISRRSSIRTK--QHTAAGASR 70

Query: 186 HIPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +      ++    +K+   G Q  +                   A+++G E  G   + 
Sbjct: 71  WVKVGLSDSIVPVGEKIREAGMQILVATYRPDAVDFRSIDYTRPTAIVMGEELTGPSEEA 130

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              A    ++ M G++++LNVS AAA+ L+  Q   
Sbjct: 131 MNLADHFVYIPMFGMVESLNVSVAAALILFEAQRQR 166


>gi|56415633|ref|YP_152708.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364560|ref|YP_002144197.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129890|gb|AAV79396.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096037|emb|CAR61624.1| tRNA (guanosine-2'-O)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 229

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + DA+  +     Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRTIGDAVAHLKGREMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|116253504|ref|YP_769342.1| rRNA methyltransferase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258152|emb|CAK09253.1| putative rRNA methyltransferase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 231

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 90/218 (41%), Gaps = 6/218 (2%)

Query: 69  FQLLATKNALAR-LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---LSP 124
            ++L  +N +   L      P   PV       +D +VG   +H+G+           + 
Sbjct: 15  EKILLLRNRVEGVLPILERFPADVPVYVAGADVLDGVVGFH-LHRGVLALGRRQDRGEAA 73

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            LDA+    L++V   +++  N G++ R+A AF  D ++  +           + + G++
Sbjct: 74  LLDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSV 133

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P+ R     D L  +   GF    LS   +  +     + ++AL++G EG+GL    
Sbjct: 134 LSVPHRRGGKALDVLVALAERGFAIWTLSPHGRTDIRAIPASMRMALVVGTEGEGLPDAL 193

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  A +     + +LN + A  +AL+   +   +
Sbjct: 194 LARF-QSARIPQSEELDSLNAATATGIALFSMASAMGR 230


>gi|46580760|ref|YP_011568.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450180|gb|AAS96828.1| tRNA (guanosine-2'-O-)-methyltransferase [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311234472|gb|ADP87326.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 196

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 4/153 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEHIP 188
           R   L +VL +++DPHN+ AI RS  AF    +     Y+ +    L+ K+++ A + + 
Sbjct: 20  RQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLY--YTDTAFPSLSGKTSASARKWVD 77

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R  +    +  + + G Q +  S     KP+         A+I+G E  G+  +  + 
Sbjct: 78  TVRHQDRDSLMSTLRASGHQVLATSCSPVAKPVADYDLTRPTAIIMGNEHSGVSQELVDV 137

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                ++ M G+I++ NVS AAA+ L       
Sbjct: 138 VDGEVYIPMYGMIQSFNVSVAAAILLSEASRQR 170


>gi|194336785|ref|YP_002018579.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309262|gb|ACF43962.1| tRNA guanosine-2'-O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 212

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 9/157 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186
           R   L +++D+VN  HN+ AI+RS      D I     ++ S    +     +A+GA + 
Sbjct: 5   RQPDLTVIMDNVNKAHNLSAIIRSCDGVGIDEI-----HAVSYRKSIYAKQNAAAGASKW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQT-IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++  A +K+ + G Q  +    +  +           AL++GAE  G+  +  
Sbjct: 60  LTLTLHPDIASAYRKVSACGMQILVATGKEGSRDFRAIDYTVPTALVMGAEWDGISEEAI 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A     + M G++++LNVS A AV L+  Q   A+
Sbjct: 120 KGADHAITVPMFGMVESLNVSVATAVILFEAQRQRAE 156


>gi|83311572|ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82946413|dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 214

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 12/215 (5%)

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----- 129
           K+A A +       H  P +  P + + KI+G   +H G+   T P      D       
Sbjct: 2   KDAAAEMCKAMAAAHK-PYRMAPTEELTKILGS-PLHGGILAVTRPKPIRVFDPADAHVW 59

Query: 130 -RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHI 187
            +  + L+VLD V +PHN+GAI R+   F  + ++ +      S S    + + G LE +
Sbjct: 60  AKEGRPLLVLDGVGNPHNLGAIARTMAFFGLERLLISDHPGQASPSEASLRVSEGGLEWV 119

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQ 245
             IR      AL+++     + +G +  S KP+ + +      IALILG E  GL   T 
Sbjct: 120 EVIRAQKFVAALKRLRDSH-RIVGTALGSGKPVAEVLNRPGKPIALILGNEEDGLPTATL 178

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +  L   G +++LNV+  AA+ ++      
Sbjct: 179 AACDDIVTLPGSGRVQSLNVAATAAILIHELAKQR 213


>gi|262091753|gb|ACY25342.1| rRNA methylase [uncultured actinobacterium]
          Length = 196

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 82/184 (44%), Gaps = 11/184 (5%)

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            ++++       Q +    A      ++ + + + +++ D ++DP N+G I RSA A   
Sbjct: 17  VLERVASTT-TPQPVIA-IAERRVSEVEELESCEWIVIADQISDPGNLGTIFRSAEAAGA 74

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD---S 216
            G++ T     + ++ + +S++G++ +IP          + ++   GF  +G SS     
Sbjct: 75  SGVVLTPGTVEAFNSKVVRSSAGSMFYIPVFE----DITIDEVKQAGFSIVGTSSHEQRG 130

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +P  +     KIA+++G E  G+     E       +   G  ++LNV+ AA V  +  
Sbjct: 131 SRPFTEASLTGKIAIVVGNEAHGMDD--AELVDQWITIPHRGRSESLNVAMAATVVCFEV 188

Query: 277 QNHF 280
            +  
Sbjct: 189 AHQR 192


>gi|188532205|ref|YP_001906002.1| tRNA guanosine-2'-O-methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188027247|emb|CAO95086.1| Putative tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 231

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       P S    +  SA+G+   
Sbjct: 14  AARQHDLTVCMEQVHKPHNVSAVIRTADAIGVHEV---HAVWPGSRMRTMVSSAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ DA+  +     Q +    S+      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRSIADAVSCLKGQNMQILATHLSEKAVDFREVDYTRPTCILMGQEKTGITQEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 ELADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|329296824|ref|ZP_08254160.1| tRNA guanosine-2'-O-methyltransferase [Plautia stali symbiont]
          Length = 239

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 5/154 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHI 187
           +R   L + ++ V+ PHN+ A++R+A A     +       PS     +  +++G+   +
Sbjct: 1   MRQHDLTVCMEQVHKPHNVSAVIRTADAVGIHEV---HAVWPSVRMRTMVSASAGSNSWV 57

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++ DA++ +   G Q +    SD      +        +++G E  G+  +   
Sbjct: 58  KVKTHRHIADAVRHLKDRGMQVLATHLSDKAVDFREIDYTKPTCILMGKEKTGITAEALA 117

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + + G++++LNVS A+A+ LY  Q   
Sbjct: 118 LADRDIIIPIVGMVQSLNVSVASALILYEAQRQR 151


>gi|269925433|ref|YP_003322056.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789093|gb|ACZ41234.1| tRNA guanosine-2'-O-methyltransferase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 212

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 6/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIP 188
           R   L +VL++V+DPHN+ A+LRS  A     +     Y+  E   L+K+ SG AL+ + 
Sbjct: 22  RQPDLTVVLENVHDPHNVSAVLRSCDAVGVLAVHLV--YTIEEFPDLSKNVSGSALKWLE 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGL---SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            I+  ++ D    + S G                L         AL+ G E +G+  +  
Sbjct: 80  IIKHKDIQDCYDTLRSQGMTIYTTYLADPQRSHDLYSLDLTKPTALVFGNEQRGVSEEAS 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LN+S A AV LY      
Sbjct: 140 RLADGNFVIPMMGMVQSLNISVACAVTLYEALRQR 174


>gi|239606661|gb|EEQ83648.1| RNA methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 522

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 135/364 (37%), Gaps = 97/364 (26%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           ++ +EK+ +  +     L R      ++     ++   +   + F+YG   V AAL    
Sbjct: 121 ERNAEKLAARSEQTEFNLERPPHTRPQVSITAPRAIPYTTAASEFIYGASAVLAALRCGR 180

Query: 66  RKIFQLLA-------------TKNALARLDWDAN--LPHPFPVKTVP---PQTIDKIVGK 107
           RK+++L                +     LD      L     VK V    P+ +DK+ G 
Sbjct: 181 RKLYKLYIYDAPDKVSLRLGRKQPRDPMLDTITKFGLAAGVHVKQVAGNWPKLLDKMSG- 239

Query: 108 EAVHQGLALETAPLLSPTLDAV-------------------------------------- 129
              H G  LE + L    +D++                                      
Sbjct: 240 GRPHNGCILEASQLPKLPVDSLLPVASLSDTHFNASVCQQSAEEAEVNGTSGRIPRWAYK 299

Query: 130 -------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                              ++LD + D  N+GAI+RSA  F  D II + R S   SAV+
Sbjct: 300 DEDCSLTENVFKPSRYPFALLLDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVV 359

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGF---------------QTIGLSSD---SKK 218
            K+++GA E+IP +  +N T+ L+     G+               QT G S++   S++
Sbjct: 360 IKASAGAAENIPILTTTNPTNFLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRR 419

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAA 269
            +  ++      L+LG+E +GL+   ++ A     +              + +LNVS A+
Sbjct: 420 DVSTKLSEAPCILMLGSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVAS 479

Query: 270 AVAL 273
           A+  
Sbjct: 480 ALLC 483


>gi|261197279|ref|XP_002625042.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239595672|gb|EEQ78253.1| RNA methyltransferase [Ajellomyces dermatitidis SLH14081]
          Length = 522

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 135/364 (37%), Gaps = 97/364 (26%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           ++ +EK+ +  +     L R      ++     ++   +   + F+YG   V AAL    
Sbjct: 121 ERNAEKLAARSEQTEFNLERPPHTRPQVSITAPRAIPYTTAASEFIYGASAVLAALRCGR 180

Query: 66  RKIFQLLA-------------TKNALARLDWDAN--LPHPFPVKTVP---PQTIDKIVGK 107
           RK+++L                +     LD      L     VK V    P+ +DK+ G 
Sbjct: 181 RKLYKLYIYDAPDKVSLRLGRKQPRDPMLDTITKFGLAAGVHVKQVAGNWPKLLDKMSG- 239

Query: 108 EAVHQGLALETAPLLSPTLDAV-------------------------------------- 129
              H G  LE + L    +D++                                      
Sbjct: 240 GRPHNGCILEASQLPKLPVDSLLPVASLSDTHFNASVCQQSAEEAEVNGTSGRIPRWAYK 299

Query: 130 -------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                              ++LD + D  N+GAI+RSA  F  D II + R S   SAV+
Sbjct: 300 DEDCSLTENVFKPSRYPFALLLDGIRDEGNVGAIIRSAYYFGVDSIIVSTRNSAPISAVV 359

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGF---------------QTIGLSSD---SKK 218
            K+++GA E+IP +  +N T+ L+     G+               QT G S++   S++
Sbjct: 360 IKASAGAAENIPILTTTNPTNFLKNTRMNGWKIFAAEAPAAASASQQTFGTSNEQILSRR 419

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAA 269
            +  ++      L+LG+E +GL+   ++ A     +              + +LNVS A+
Sbjct: 420 DVSTKLSEAPCILMLGSEDQGLQRSVRQQADGAVVIPGAITLSSAEDRAGVDSLNVSVAS 479

Query: 270 AVAL 273
           A+  
Sbjct: 480 ALLC 483


>gi|333030523|ref|ZP_08458584.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
 gi|332741120|gb|EGJ71602.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
          Length = 252

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 106/254 (41%), Gaps = 16/254 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++S +QK ++  + +     G   V   +   + K+  L+AT++ +     + +  H
Sbjct: 8   IKLIRSLDQK-KYRKEHQLFVAEGPKLVDELIGYFNCKL--LVATQDWIQ----EHSNYH 60

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +       + K    +   Q +AL   P       A+    L + LD V DP N+G 
Sbjct: 61  TEELILATQDELSKASALKTPQQVIALFEQPQYEIDNKAM-QHSLCLALDGVQDPGNLGT 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F  + I  ++      +    ++  G L  +     ++LT+ ++   +     
Sbjct: 120 IIRLADWFGIEHIYCSQDTVDIYNTKTIQATMGGLARVKIHY-TSLTEIIK--QNPNIPI 176

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL---HM-PGIIKALNV 265
            G   D +   +++++   + +I+G EGKG+  + QE  +   ++    M     ++LNV
Sbjct: 177 YGTFLDGENIYDKQLEQKGL-IIMGNEGKGISDELQELVSHKLYIPNYPMNKESAESLNV 235

Query: 266 SNAAAVALYITQNH 279
           + A A+     +  
Sbjct: 236 AIATAIVCSEFRRQ 249


>gi|148241671|ref|YP_001226828.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
 gi|147849981|emb|CAK27475.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. RCC307]
          Length = 229

 Score =  159 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 15/171 (8%)

Query: 120 PLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           PLL    + +R+      + L ++++ V  PHN+ AILR+  A         + ++ S  
Sbjct: 2   PLLPRRFERLRSVLKRRMADLTVLMEAVEKPHNLSAILRTCDATGV-----FEAHAVSLK 56

Query: 174 ---AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKI 229
                   +A G+ + +P     ++ DA  ++ + GF+  G     +             
Sbjct: 57  GRPRTFNSTAQGSQKWVPIRDHDSVKDAFAELRAKGFRIYGTMLGVNAVDYRSCDFTKPS 116

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A +LGAE  GL  +  +       + M G++++LNVS AAA  L+      
Sbjct: 117 AFVLGAEKWGLTAEAGDAVDQPVFIPMSGMVQSLNVSVAAATLLFEAVRQR 167


>gi|94986799|ref|YP_594732.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
 gi|94731048|emb|CAJ54411.1| rRNA methylases [Lawsonia intracellularis PHE/MN1-00]
          Length = 196

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-AKSASGALEH 186
           ++R   L +VL +++DPHN+ AI RSA AF  D I     Y+ +    L +KS++ A + 
Sbjct: 18  SLRQKNLTLVLANIHDPHNVSAIYRSADAFGIDTIHLY--YTDTPFPKLGSKSSASAKKW 75

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  I   +    ++ +    ++ I  S +   +PL         A+I+G E  G+ P+  
Sbjct: 76  VKTIYHQSANKLIRMLKEDNYKVIATSCTSQAQPLLSHNFTGSTAIIMGNEHAGVPPELT 135

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               S  ++ M G++++ NVS AAA+ L       
Sbjct: 136 GLVDSELYIPMYGMVQSFNVSVAAAIILAEASRQR 170


>gi|292486540|ref|YP_003529406.1| putative RNA methylase [Erwinia amylovora CFBP1430]
 gi|292897775|ref|YP_003537144.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291197623|emb|CBJ44717.1| tRNA (guanosine-2'-O)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291551953|emb|CBA18990.1| putative RNA methylase [Erwinia amylovora CFBP1430]
          Length = 231

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ A++R+A A     +       P S    +  +A+G+   
Sbjct: 14  AARQHDLTVCMEQVHKPHNVSAVIRTADAVGVHEV---HAIWPGSRMRTMVSAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++ DA+  +     Q +    SD      +        +++G E  G+  +  
Sbjct: 71  VQVKTHRSIADAVTCLKGHNMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITREAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 131 DLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 165


>gi|330931647|ref|XP_003303484.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
 gi|311320500|gb|EFQ88423.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
          Length = 657

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 108/312 (34%), Gaps = 75/312 (24%)

Query: 38  QKSRHTSQPENL--------FLYGVHTVSAALNNPSRKIFQLLA----TKNALARLDWDA 85
           +K++    PE+L        F+YG  +V AA+    RK ++L       +N+ A L    
Sbjct: 327 EKAKLIRGPESLPYTTAASEFIYGTRSVLAAIKANRRKFYKLYIHARGMENSQAILSTIR 386

Query: 86  NLPHPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNS----------- 132
           +L        V  + +  +        H GL LE +P     +  +R +           
Sbjct: 387 SLKLFHIAVEVGDEYMQAMDKASNGRPHNGLILEASPPPILPITQLRAASIEEGAFNLSL 446

Query: 133 --------------------------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                                      L++ +D V D  N+GAI RSA     D IIT  
Sbjct: 447 DRQSAEEEAINGKQELYEYKSDGWRHPLILYIDGVVDEGNLGAIARSAYVLGVDAIITPT 506

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS------DSKKPL 220
            ++   S +  K++SGA E IP  R+      L      G++     +      D ++ +
Sbjct: 507 HHTAEWSPIAIKASSGAAEAIPLFRVKEPEQFLHSSSQVGWRIYASDAVPLSKQDGRQVV 566

Query: 221 EQEIKN-------------DKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKA 262
               K                  L++G+E  G++    + A     +          + +
Sbjct: 567 YAVAKKYSPLPAYHSPLAEHPTILMMGSEHSGVKKHLAKMAHYKVGIPHGRSVDEVGVDS 626

Query: 263 LNVSNAAAVALY 274
            NVS A  +  Y
Sbjct: 627 FNVSVATGILCY 638


>gi|325067170|ref|ZP_08125843.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces oris K20]
          Length = 310

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 15/240 (6%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHP 90
           +   N +++H        + G   V  A+ +   ++  +  T+ AL R    WD  +   
Sbjct: 55  LSRRNARAKHRR----FLVEGPQGVREAVRHAPGRVLDVYLTEAALERHSEIWDEAVAAG 110

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS----PTLDAVRNSQLLMVLDHVNDPHN 146
             V     Q +D +       QGL    A   +        A+  ++L+ VL    DP N
Sbjct: 111 LYVHVTTQQVMDAMSPDA---QGLLAVVATEEATGSEALAAALEGARLVAVLTQAQDPGN 167

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G I+R+A A   D I+  +      +  + +S +G+L H+P +    L DA+  +H+ G
Sbjct: 168 AGTIIRAADAAGADAIVLVRGSVDPTAPKVVRSTAGSLFHLPVVTGVALDDAVTALHNAG 227

Query: 207 FQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +         L +   +     A +LG E  GL  +    A ++  + + G  ++LN
Sbjct: 228 LTVLAADGRGDFDLLEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYGKAESLN 287


>gi|226227758|ref|YP_002761864.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226090949|dbj|BAH39394.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 265

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 94/252 (37%), Gaps = 11/252 (4%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---- 88
           +    Q+ +   +       G  TV   L +    +  +L + + L      A +     
Sbjct: 6   LARDLQRRKGRERQHRFVAEGTRTVEGLLASG-LPVTGVLVSASGLEDGRTAALVAQARD 64

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNI 147
               V  V    +      E+  QG+    AP+    L   +     ++VLD + DP N+
Sbjct: 65  RGVQVLEVGDAELMGAADTES-PQGILA-VAPIPDHRLPTPMPPCARILVLDALQDPGNV 122

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A      I         +A + + + GAL H P + + +  D   ++    F
Sbjct: 123 GTVIRTAAALGVSATIALPGTVDLWNAKVVRGSMGALFHHPVLAM-SWEDCAAQLGLAAF 181

Query: 208 QTIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             +   +D      L      D++AL+   EG GL        T    + M   +++LNV
Sbjct: 182 VIMAADTDGVNIADLRPGQVPDRVALVASNEGAGLSAHLASAVTQRVAIAMEPTVESLNV 241

Query: 266 SNAAAVALYITQ 277
             A  + L+  +
Sbjct: 242 GVATGILLHALR 253


>gi|33861855|ref|NP_893416.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33640223|emb|CAE19758.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 246

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 19/228 (8%)

Query: 57  VSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
           +   L + +    ++L T+  L + +          +  V  + +   V       G+A 
Sbjct: 2   IEEMLKSGNHP-SKILTTEKWLDKNEDLYQKIDQSLINVVSEEVLASAVST-KNPDGVAA 59

Query: 117 ETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                  P  D        ++VLD + DP N+G + R+A+A     I+     +      
Sbjct: 60  LVEISSIPNFDFNNIEDDFILVLDRIQDPGNMGNLFRTALAAGVSKILLAGG-AHPLGQK 118

Query: 176 LAKSASGALEHIPYIRIS--------NLTDALQKMHSWGFQTIGLSSD------SKKPLE 221
           + +++SG++ H+P+ R          +L  +L +    GFQ I  SS       S+KP  
Sbjct: 119 VLRASSGSVFHLPFKRFDGGEEEIINSLLSSLDQFSKNGFQIISTSSHNKNLYKSQKPYW 178

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NA 268
           +   +   ALILG EG G+  + QE       +    ++++LNV+  A
Sbjct: 179 EIDWSKPTALILGNEGNGIHKRIQEAFNETITIPHSELVESLNVACVA 226


>gi|317503287|ref|ZP_07961339.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606]
 gi|315665593|gb|EFV05208.1| TrmH family RNA methyltransferase [Prevotella salivae DSM 15606]
          Length = 250

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 95/243 (39%), Gaps = 15/243 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++  Q       G   V   L    ++   ++AT   +     + +      V  V  +
Sbjct: 16  KKNREQTHLFLAEGYKLVGELL--AKQRAHTIVATHEWI----ENQSCVQANEVIEVTQE 69

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + K+   +   Q   L   P      D +  S L ++LD V DP N+G I+R A  F  
Sbjct: 70  ELKKVSLLQHPQQ--VLGVFPFFQTGNDTIDISALTLMLDGVQDPGNLGTIIRIADWFGI 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + I  +   +   +  + ++  G++  +    + +L   L+++    +   G   +    
Sbjct: 128 NDIFCSHETADLYNPKVVQATMGSITRVRLHYV-SLVSVLKQLPE-DYPIYGTLLEGNNI 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVALYI 275
            ++++  + + +I+G EG G+  + ++  +    +          ++LNV+ A A+    
Sbjct: 186 YDEQLSTNGL-IIMGNEGNGISTEIRQLVSHPLRIPNYPPDAATAESLNVAIATAITCAE 244

Query: 276 TQN 278
            + 
Sbjct: 245 FRR 247


>gi|309379967|emb|CBX21378.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 261

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 93/259 (35%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   + +     + +   Q     L GVH +   L +  + +   +    A    +   
Sbjct: 8   NNEHVRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGKPLGVYI--PEAKMPSEEVR 65

Query: 86  NLPHPFP---VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            L    P     +V    + KI         LAL    +  P    +      +VLD V 
Sbjct: 66  KLMAVLPEDGFFSVSDGILKKISSLTCADDVLAL----IDIPDAGVLPAGGDCVVLDGVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LRSA A     ++  K  + + S  + ++  GA         ++L   L   
Sbjct: 122 DPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGAHFLSEIYPQADLEIWLAHY 181

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F T  L  + +  L  E   +    + G EG G+     + A     + M    ++
Sbjct: 182 KGRVFAT-ALREEKQAVLYNEDLREPTTWVFGNEGAGVGKAVLDRADKCVRIPMHDATES 240

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ AA + L+      A
Sbjct: 241 LNVAMAATICLFEQMRQRA 259


>gi|124025191|ref|YP_001014307.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
 gi|123960259|gb|ABM75042.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
          Length = 229

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 120 PLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           PLL    + +++      S L +++++V  PHN+ AI+RS  A     +     ++  + 
Sbjct: 2   PLLPRRFERLKSVLNRRISDLTVLIENVEKPHNLSAIIRSCDAVGV--LEAYAIFNKEKF 59

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALI 232
                +A G+ + +   +    T+A++ +   GF+  G + + +     +       A +
Sbjct: 60  LTFNSTAQGSQKWVKINQYKMTTEAIKVLKEKGFKLYGTNLNPRSIDYRKCNFKGPTAFV 119

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
           LGAE  G+  +         H+ M G++++LNVS AA+  L+    Q   A
Sbjct: 120 LGAEKWGISEEASSLMDEHIHIPMRGMVESLNVSVAASALLFEAIRQRQVA 170


>gi|329946902|ref|ZP_08294314.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526713|gb|EGF53726.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 286

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 97/258 (37%), Gaps = 23/258 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     + R  ++           ++ A+         L+A ++        A+  
Sbjct: 15  DYTRLTDVALRRRLETRRGLYMAESSKVITRAVAAGHAPRSFLMAPRHLDEMRPVIASAT 74

Query: 89  H--------PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQL 134
                      PV   P + ++ I G       LA    P L+   + +        ++ 
Sbjct: 75  GCAGRDDGGDVPVFVAPEEVLESITGFHLHRGALAAMNRPELASVPELLSAARGGAGARR 134

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L+ + D  N+GA  RSA A   D ++ T R +        + + G +  + + RI  
Sbjct: 135 VAILEDLVDHTNVGAAFRSAAALGIDAVLVTPRCADPLYRRSVRVSMGTVFQVLWTRIER 194

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------ALILGAEGKGLRPKTQE 246
              A+ ++H+ GF    L+         E+    +        A++LG EG GL  +T  
Sbjct: 195 WP-AMDELHAQGFTVAALALSENSVALDELAASPVCTDPGSQVAVVLGKEGDGLSHRTIA 253

Query: 247 TATSMAHLHMPGIIKALN 264
            A  +  + M G + +LN
Sbjct: 254 EADEVVRIPMAGAVDSLN 271


>gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa]
 gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa]
          Length = 359

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 23/198 (11%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDA--------VRNSQLLMVLDHVNDPHNIGAI 150
           + + ++   E+V   +AL   P     +D           +   ++VL+ + DP N+G +
Sbjct: 159 KKLSQLQSTESVD-AIALMKFPTTYFVVDNHQDCSRKWFPSPHRILVLEGIQDPGNLGTL 217

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-SWGFQT 209
           LRSA+A    G+          ++ + +++ GA   IP +  S     L+ +   +  + 
Sbjct: 218 LRSALALGWGGVFLLPGCCDPFNSKVLRASRGASFQIPIVSGSWYH--LEALKDEYQMKM 275

Query: 210 IGLSSDSKKP----------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +    D              L        + L+LG+EG GL  K Q     +  + M G 
Sbjct: 276 LAGHPDCNDKSRPVSQLSQGLADCFARVPLCLVLGSEGHGLSEKAQREC-ELLSIPMAGE 334

Query: 260 IKALNVSNAAAVALYITQ 277
            ++LNV+ A  + LY+ Q
Sbjct: 335 FESLNVAVAGGIFLYMLQ 352


>gi|308234552|ref|ZP_07665289.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium vaginae DSM 15829]
 gi|328944150|ref|ZP_08241615.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327492119|gb|EGF23893.1| TrmH family RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 272

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 8/215 (3%)

Query: 68  IFQLLATKNALARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP-LLSP 124
           +  +L     L+ L+           P+     + + K+VG        A    P LLS 
Sbjct: 54  VISVLVWDKHLSNLERSISPEAFGDVPIYVASHELLSKLVGFNVCRGYYACVRRPSLLSS 113

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                 +   + V++ + D  N+GA++R+A A   D ++ +   +   +    +++ G +
Sbjct: 114 ASVDWHSYTRIAVVEDLCDVSNLGALIRNACALGIDAVVCSPTCADPFNRRCVRTSMGTV 173

Query: 185 EHIPYIRI-SNLT-DALQKMHSWGFQTIGLSSDSKK-PLEQEIKN--DKIALILGAEGKG 239
             +P I+  SN   D    + S  +   G +       +     +   + AL  G E KG
Sbjct: 174 FRLPIIQANSNWPYDVFSCLSSADYTVFGAALRKDALNVHDVDFSHYKRCALCFGNESKG 233

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L     +    +  + M   + +LNV+ ++AV  +
Sbjct: 234 LSTPVIDACDQLVMIPMKHGVDSLNVAASSAVLFW 268


>gi|315127927|ref|YP_004069930.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315016441|gb|ADT69779.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 228

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R + L + L+ V+  HN+ AI+R+A A  C  +       P +   L   ++ G+   + 
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRTADAVGCHHV---HAVWPEKQKWLTNNTSGGSKNWLD 72

Query: 189 YIRISNLTDALQKMHSWG--FQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                N+ DA   + +     Q +    S+      +       A+I+G E  G+  K  
Sbjct: 73  THLHKNIDDAAASIRAHNPDVQILATHLSEDAVDFREIDYTKPTAIIVGQEKTGISEKAL 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E A     + M G++++LNVS AAA+ L+  Q   
Sbjct: 133 EYADQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167


>gi|154509022|ref|ZP_02044664.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798656|gb|EDN81076.1| hypothetical protein ACTODO_01539 [Actinomyces odontolyticus ATCC
           17982]
          Length = 246

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 16/242 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP--VKTVPPQTIDKIVG 106
           + + G   V     +    +  +   ++A        ++       V  V  +    + G
Sbjct: 1   MLVEGPQAVRELTAHRPFAVRDVYVREDAWETHADVVDVARRATRWVHPVTAEVSAALSG 60

Query: 107 KEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                QG+    +   LS  L      + ++VL    DP N+G I+R+A AF   G++  
Sbjct: 61  DS---QGICAVASLDALSRELPEPSVGETIVVLAQGRDPGNVGTIIRTADAFGAVGVVAV 117

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI- 224
                + S  + +S++G++ HIP   + +  DA   +H      +G S  +      ++ 
Sbjct: 118 AGTVDAASPKVVRSSAGSVFHIPVCVVPSFADARALIHGRSAALLGTSGGAASISLSDLL 177

Query: 225 ---------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                     +   A + G E +GL          +  + M G  ++LNV++AAA  L+ 
Sbjct: 178 VQVVSARSRLSQSHAWVFGNEARGLSGDEMRLCDGLVSIPMTGDAESLNVASAAATCLFA 237

Query: 276 TQ 277
           +Q
Sbjct: 238 SQ 239


>gi|212691896|ref|ZP_03300024.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
 gi|212665568|gb|EEB26140.1| hypothetical protein BACDOR_01391 [Bacteroides dorei DSM 17855]
          Length = 254

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 6/222 (2%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +     + R             + +S AL+     +  +   K+               P
Sbjct: 2   LTEAQLRQRIELGKGVFIAESPNVISRALDAGYEPLALMCERKHISGSAAHIIKRCGDVP 61

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V T   + +  + G       L     P+L    +  R+++ ++V+D V D  NIGAI R
Sbjct: 62  VYTGDRELLATLTGYVLTRGVLCAMRRPVLPSMEEICRDTRRIVVIDGVVDTTNIGAIFR 121

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A   D ++ T+      +    + + G++  +P+   + L   +  ++  GF+T  +
Sbjct: 122 SAAALGIDAVLLTRNSCDPLNRRAVRVSMGSVFLVPW---TWLDGTIGDLNKLGFRTAAM 178

Query: 213 SS-DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSM 251
           +  D    ++  I     ++A+++G EG+GL  KT   A   
Sbjct: 179 ALTDDSISIDHPILAAEPRLAIVMGTEGEGLSYKTIAEADYC 220


>gi|85373248|ref|YP_457310.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786331|gb|ABC62513.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 270

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 13/258 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K ++S  +K +H  +       G+  ++ A      ++ ++L             
Sbjct: 10  SNPTVKYLRSLREK-KHRKRERKFLAEGLRLLTDA--RECDRVPEMLVMAERRDPHPLLT 66

Query: 86  NLPHPF-----PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVL 138
            L          V     + + KI GK +  Q          + +L A+  +++ + +V 
Sbjct: 67  ALEEAVTGAGGEVIETSDEILAKITGK-SNPQ-AVAGVFAEWNTSLSALDRQSAPIWLVA 124

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             + DP N+G +LR+  A    G+I         S    +++ GA+      +     D 
Sbjct: 125 QALRDPGNLGTMLRTGDAVGAGGLILLDDCVDPFSVEAVRASMGAVFTQQIAQAR-WDDF 183

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L  + S   Q +  S     P           +++G E +GL    +        + M G
Sbjct: 184 LLWLRSGDGQLVAASLRDAVPYRGAAYAAPCFILVGNESQGLPENYETACDLRVTMPMRG 243

Query: 259 IIKALNVSNAAAVALYIT 276
              +LN + A AV  Y  
Sbjct: 244 RADSLNAAVAGAVLAYEV 261


>gi|119357014|ref|YP_911658.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354363|gb|ABL65234.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 224

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 9/155 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186
           R   L +V+D+VN  HN+ AI+RS  A     I     ++ S    +     +A+G    
Sbjct: 5   RQPDLSLVMDNVNKAHNLSAIIRSCDAVGIHEI-----HAVSYRKNIFDRQTAAAGTTRW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      ++T  L  +   G Q +  S  SK             ALILGAE  G+  +  
Sbjct: 60  VEVTLHQSITSGLSMIAGRGMQILAASGSSKNVDFRSIDYTRPTALILGAEWDGVSTEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E A     + M G+I++LNVS AAAV L+  +   
Sbjct: 120 EAADHHISIPMHGMIESLNVSVAAAVILFEAERQR 154


>gi|254429253|ref|ZP_05042960.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
 gi|196195422|gb|EDX90381.1| RNA methyltransferase, TrmH family [Alcanivorax sp. DG881]
          Length = 230

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 9/170 (5%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESA 174
           E    +  TLD  R   L +++D V+ PHNI AI+R+  A     +     K  +     
Sbjct: 4   ERYRRICETLDR-RQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKNRA----R 58

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
           + A +A G+   +   +    TD ++++   G Q +    SD   P  +       AL+L
Sbjct: 59  MAAGTAMGSQRWVQVHKRDESTDVIRELQGQGVQVLAAHLSDDAIPYREVDYTRPTALLL 118

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHFAK 282
           G E  G+  +          + M G++++ NVS AAA+ L    +   AK
Sbjct: 119 GTEKFGVSDEVASVVDQNVTIPMMGMVESFNVSVAAAIILSEACEQRRAK 168


>gi|329939048|ref|ZP_08288422.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329301933|gb|EGG45826.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 283

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 106/280 (37%), Gaps = 26/280 (9%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSR---- 66
           + S +    +  RR  R            R+    E LFL  G   V  A+ +       
Sbjct: 2   LISPRSPRVSAARRLAR------------RNFRGKERLFLAEGPQAVREAVGHRGADGDG 49

Query: 67  -KIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
             + +L  T  A  R      A       V     + I  I       QGL      L +
Sbjct: 50  ATLVELFTTAEAAERYADIVTAARSAGARVHLAEEEVIADI-STTVTPQGLVGVCRFLDT 108

Query: 124 PTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           P  + +    +L+ VL HV DP N G +LR A A   D ++ T       +    +++ G
Sbjct: 109 PFEEILAARPRLVAVLAHVRDPGNAGTVLRCADAAGADAVVLTDASVDLYNPKAVRASVG 168

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGK 238
           +L H+P      +  A+  +   G + +         L+ E+         A + G E  
Sbjct: 169 SLFHLPVAVGVTVERAVGGLRDAGVRVLAADGAGADDLDDELDRGTMGTPTAWVFGNEAW 228

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GL  +T+  A ++  + + G  ++LN++ AAAV LY +  
Sbjct: 229 GLPEETRALADAVVRVPIHGRAESLNLATAAAVCLYASAR 268


>gi|189500156|ref|YP_001959626.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           BS1]
 gi|189495597|gb|ACE04145.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeobacteroides
           BS1]
          Length = 216

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSA 180
             L A R   L +++D+VN PHN+ AI+RS  A   + +     ++ SE  ++    ++A
Sbjct: 11  KQLLAYRQPDLTVLMDNVNKPHNLSAIIRSCDAVGIETV-----HAVSEEKIIKNRQRAA 65

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKG 239
            G+ + +       +  A   + + G Q +      +             A+++GAE  G
Sbjct: 66  RGSSKWVNLELHETIEHAFACLRAQGMQVLVAHHHEESVDFRTLDYTLPTAIVMGAELFG 125

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               T   A    H+ M G++++LNVS AAAV L+  Q   
Sbjct: 126 PSATTLSGADHCIHIPMQGMVESLNVSVAAAVILFEAQRQR 166


>gi|312214449|emb|CBX94441.1| hypothetical protein [Leptosphaeria maculans]
          Length = 584

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 123/346 (35%), Gaps = 83/346 (23%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSR-HTSQPENL--------FLYGVHTVSAALNNPSR 66
           ++ H AK   +  D +     ++  R   S PE+L        F+YG  +V AA+    R
Sbjct: 225 REPHRAKSTESGPDRRVNGHKSEAPRSFQSGPESLPYTTAASEFIYGHSSVIAAIKANRR 284

Query: 67  KIFQLLATKNALAR--LDWDANLPHPFPV-KTVPPQTIDKI--VGKEAVHQGLALETAPL 121
           K+++L        R  L         F +   V  + +  +        H G+ LE++PL
Sbjct: 285 KLYKLYIHSQRGKRDGLMTKIRAHKLFAITSEVGDEYLQAMDKASSGRPHNGVVLESSPL 344

Query: 122 LSPTLDAVRNS-------------------------------------QLLMVLDHVNDP 144
             P + A+++                                       L++ +D V D 
Sbjct: 345 PVPPIVALKSPSMEDQNFGVALDAQTAEDTLVNGRNELYSYKSGGWRHPLILYIDGVLDE 404

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA+ RSA     D I+T+  +    S +  K+++GA E IP  ++    D L K   
Sbjct: 405 GNLGAMARSAYFLGVDAIVTSTHHIAPWSHIALKASAGAAEAIPIFKVGKPADFLAKSSE 464

Query: 205 WGFQTIG-----------------------LSSDSKKPLEQE---IKNDKIALILGAEGK 238
            G++                              S K L+ +   +      L++GAE  
Sbjct: 465 AGWKIYSSNTAPPAPPSNQSPETEISKVVYTLPQSSKRLDVDHCPVVEHPTILMMGAESS 524

Query: 239 GLRPKTQETATSMAHLHMPG-----IIKALNVSNAAAVALYI-TQN 278
           GL+      A     +          + +LNVS AA++  Y   Q 
Sbjct: 525 GLQKSLLRLAHYNVGIPHGRDVNEVGVDSLNVSVAASLLCYEMLQR 570


>gi|262091797|gb|ACY25385.1| rRNA methylase [uncultured actinobacterium]
          Length = 259

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 12/242 (4%)

Query: 41  RHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +           G+     AL  N   +I  L  T N  +++   ++L   F V  V  +
Sbjct: 23  KERKAAGQFVAEGLQCAREALKSNSGPRIETLYLTNNGRSKVAEISDLS-AFNVVDVSDE 81

Query: 100 TIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            + ++  +    QG+      P ++    A+  S+  + L  V DP N G ILRSA AF+
Sbjct: 82  VMKEM-SETITPQGILAVCTIPQITFDSIALNGSRRFIYLSEVQDPGNAGTILRSADAFA 140

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +IT+       S  + +S +G+L HIP      L + L    +       L ++  K
Sbjct: 141 MDAVITSPGSVDMYSPKVVRSTAGSLWHIPVFESWRLEELLNLGLNA----FSLGAEGSK 196

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIKALNVSNAAAVALYIT 276
            L Q   +     + G E +GL   T + A S  +  + MPG  ++LN+S AA++ +Y  
Sbjct: 197 SLSQYQMSGDTLAVFGNEARGLS--TAQNADSIDVVSIPMPGNAESLNLSAAASIVMYHL 254

Query: 277 QN 278
            N
Sbjct: 255 SN 256


>gi|254446967|ref|ZP_05060434.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263106|gb|EDY87384.1| tRNA (guanosine-2-O)-methyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 225

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS---GALEH 186
           R + L +V+++V+ PHN  AI+RS  A         + ++      +  +A    GA + 
Sbjct: 16  RQTSLTVVMENVHKPHNFSAIVRSCEAVGVH-----RAHAVYPEGGIGNNAGTTVGAHKW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      N+    Q++ + GFQ +    D +     +       A+++G+E  G+  +  
Sbjct: 71  VQVDTHRNIQTPFQQLKAQGFQLLTAHLDETAVDFREVDYTQPTAVVMGSELHGISEEAA 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G+ ++LNVS A A+ L+  Q   
Sbjct: 131 QLADHSIVIPMLGLTESLNVSVATALILFEAQRQR 165


>gi|330886609|gb|EGH20270.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 178

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+GA LR+A A    
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGAL 124

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            +I  K  S + +  + K A GA E IP + ++NL   L+K+   G   +G + 
Sbjct: 125 AVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAG 178


>gi|146423438|ref|XP_001487647.1| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 395

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 121/321 (37%), Gaps = 69/321 (21%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           K++ Y+  R + R+    +           P   ++YG H V AAL    R  F  L   
Sbjct: 72  KEAEYSSQRESSRETTSYRPTGMS----RNPVYEYIYGTHPVLAALTGGKRDSFNRLFVF 127

Query: 76  NALARLDWDANLPHPFPVKTVPPQ---TIDKIVGKEAVHQGLALETAPLLSPTLDAVR-- 130
           N         +      +  V  Q    ++ I+    VH G+ LET PL  P +  +   
Sbjct: 128 NPKEGTSQILSQAKKLGISIVTKQSKGDMN-ILADNGVHNGVVLETKPLEIPFIHELGVC 186

Query: 131 ------------------------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
                                            L + LD + DP N+GAI+R+A     D
Sbjct: 187 DPEAEEYDVSITNEILNSQTPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAYYMGVD 246

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            I+  +  +     V AK+A+G+L+ +   + S+    ++++   G+  I  SS + + L
Sbjct: 247 FIVVPEHDTARLGPVAAKAAAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQTSESL 306

Query: 221 EQEIK-------------------------NDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +Q+ K                            + L++G+EG G+R   Q  +  +  L 
Sbjct: 307 QQDQKLKHQKVQQQLGTKFIDPSELSTIANESPVLLVMGSEGAGVRTHLQLRSDYLVGLS 366

Query: 256 M----PGIIKALNVSNAAAVA 272
                 GI+ +LNVS A A+ 
Sbjct: 367 KGREDEGIVDSLNVSVACALM 387


>gi|66817954|ref|XP_642670.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
 gi|74876335|sp|Q76NT0|MRM1_DICDI RecName: Full=Mitochondrial rRNA methyltransferase; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase
 gi|60470728|gb|EAL68702.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
          Length = 531

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 42/227 (18%)

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN--------------- 131
                PV++V   T+D    K   HQG+ L+ +PL    +D +                 
Sbjct: 298 FKLKIPVRSVNKGTLDS-FSKGRPHQGIILDASPLTLLNIDFLEKFDINERVNKRMNGGG 356

Query: 132 ---------------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                            L +VLD + DP N+GAI+R+   F+ DG++ + + S   +   
Sbjct: 357 GGGGGGGGNKINNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAA 416

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------PLEQEIKNDKIA 230
           +KS+SGA E     R  ++   L+     G+  +G S D          + Q   +    
Sbjct: 417 SKSSSGACESFVINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPCLDINQIKLDQPTI 476

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALY 274
           LILG EG GL+P   E       +   G    I +LNVS  + + ++
Sbjct: 477 LILGNEGFGLKPSVLEICNKTIKI--VGGNYKIDSLNVSVTSGILIH 521


>gi|152992691|ref|YP_001358412.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151424552|dbj|BAF72055.1| tRNA (guanosine-2'-O-)-methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 216

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 6/158 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEHI 187
            +   L ++LD V+   N+ AILR+  A            S +    + K+   GA   +
Sbjct: 23  CKQPTLKVMLDDVHSSQNLSAILRTCDAVGVQ--HLYYTTSDNRDLRIHKTITQGAHRWV 80

Query: 188 PYIRISNLTD--ALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKT 244
              RIS       LQK    G+Q +    + +  P  +        +++G E  G+  +T
Sbjct: 81  ERTRISTEEQRVFLQKKQKEGYQVVVTHLEERAVPFREVDYTKPTIIVMGNEKDGVSSET 140

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E A ++  + M G++++LNVS AAA+ LY  +   A+
Sbjct: 141 VELADTVIIIPMQGMVQSLNVSVAAALILYEAERQLAE 178


>gi|332995098|gb|AEF05153.1| tRNA guanosine-2'-O-methyltransferase [Alteromonas sp. SN2]
          Length = 243

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK--SASGALE 185
           A R + L + L++V+ PHN+ A++R+  A     +     ++  E     +  +A G+ +
Sbjct: 14  AKRQTDLTVCLENVHKPHNVSAVVRTCDAIGIHRV-----HTVWEEKYQFRGDTAMGSQQ 68

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +      +L +A+  +   G Q +    SD+     +       A+I G E  G   + 
Sbjct: 69  WVRQTNHDSLGNAIGALKQQGMQVLVTHLSDTAVGFREVDYTKPTAIIFGQERYGATDEA 128

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              A     + M G++++LNVS AAA+ LY  Q   
Sbjct: 129 IAMADQDIIIPMAGMVQSLNVSVAAALVLYEAQRQR 164


>gi|298712193|emb|CBJ33064.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 550

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 105/304 (34%), Gaps = 79/304 (25%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKN---------ALARLDWDANLPHPFPVKTVPPQ 99
             +YG+  V   L N  R+   L              A A   +D       P+ T    
Sbjct: 231 DMVYGIAPVLNVLRNNRREKLGLYCQDGLAPANKKDRAAANRIYDIARETDVPMTTTDKG 290

Query: 100 TIDKIVGKEAVHQGLALETAPLLS------PTLDAVRNSQ-------------------- 133
            ++ + G    HQG  L+  PL        P ++ V                        
Sbjct: 291 YLNTLCG-NRPHQGFILKARPLKFEPILFLPRVEDVEADPSVEATATEADAETSPEHDDD 349

Query: 134 ----------------------------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                                       + + LD V DP N GA+LRSA  F   G++  
Sbjct: 350 DDGQEEDRSAAAAPKKPPAPLAAAATGQVWLALDEVTDPQNFGALLRSAHFFGASGVVAC 409

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI 224
            + S + +A ++KS++GA+E +     +N+   L++    G++ +G S S+   PL +  
Sbjct: 410 AKNSAALTATVSKSSAGAVEVMRVHSTANMMRFLKRSRENGWRVVGTSVSERSGPLHELP 469

Query: 225 KN---DKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----------IKALNVSNAAA 270
                    ++LG EG G+R         +  +   G            + +LNVS    
Sbjct: 470 AGPGAPPTIVVLGNEGYGVRTNVLRECEFLVEVAGDGGGALAEGATPSTVDSLNVSVTGG 529

Query: 271 VALY 274
           V L+
Sbjct: 530 VVLF 533


>gi|301168477|emb|CBW28067.1| SpoU rRNA Methylase family protein [Bacteriovorax marinus SJ]
          Length = 252

 Score =  158 bits (401), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 18/243 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP---VKTVPPQTIDKIV 105
             + G+H+++ A+ N    + +++AT   L        L        VK V P  + K+ 
Sbjct: 5   DLIVGIHSIAEAITNRPSAVRKIIATAEGLKEFRKKTRLDKEIKQFDVKIVSPHDVQKMA 64

Query: 106 ---------GKEAVHQGLALETAPLLSPTL----DAVRNSQL--LMVLDHVNDPHNIGAI 150
                      + V   + +   P+ +  L    D +  S    ++ LD V D HN  AI
Sbjct: 65  EQFYKELELSFQRVPSQIFMVVDPVETYDLAWLYDQIDKSPRYKILCLDQVTDVHNAAAI 124

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A  +  D ++T  +         A+ ASGA+EH+  +  S+L  A+ K+       I
Sbjct: 125 MRTAAFYGVDCVVTGAKGHFGTGPSFARIASGAIEHVNIVICSSLPKAITKLIEKNVSVI 184

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G S  +K+  +    +  +AL+LGAE  G+             +   G IK+LNVS AAA
Sbjct: 185 GFSEHAKEDGDGVDISGHVALVLGAEDVGMSNAVSRVVEHRVAIKPLGKIKSLNVSVAAA 244

Query: 271 VAL 273
           +A+
Sbjct: 245 IAM 247


>gi|225164081|ref|ZP_03726364.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224801322|gb|EEG19635.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 252

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 15/239 (6%)

Query: 51  LYGVHTVSAALNNPS---RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           L G+  V A     +   R+++    T   L  +     L      + V P  + KI G 
Sbjct: 8   LCGLPAVKARFQRDAASFRRLYFDYETARKLGIICKTLALAKKV-YRCVEPAELAKIAGT 66

Query: 108 EAVHQGLALET------APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              H G+          APL        +    L++LD + + HN+GAI R+A  F    
Sbjct: 67  -LHHGGVVAVVDEPALRAPLPREVRAWAKAGTPLLLLDRIGNAHNVGAIARTAAFFGVAH 125

Query: 162 IITT-KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-- 218
           II     ++        + A G LEH+   R+  L     ++H  G++ +G ++      
Sbjct: 126 IIIPAHAFAALPGESAHRIAEGGLEHLTLWRVPTLARFCAELHEAGYEVVGAATRGGALT 185

Query: 219 -PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            P          AL+LG E  GL  +  +  T +  +   G I++LNVS AAA+ ++  
Sbjct: 186 LPALPGGGGGPRALVLGNEEHGLAAEVADACTRLVTIPGSGKIESLNVSAAAAILMFAL 244


>gi|15835298|ref|NP_297057.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270285471|ref|ZP_06194865.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270289482|ref|ZP_06195784.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss]
 gi|301336868|ref|ZP_07225070.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14]
 gi|8163291|gb|AAF73591.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 265

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 99/262 (37%), Gaps = 12/262 (4%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF----QLLATKNALARLDWD 84
           + +   +   K +         L G   +  AL +    +     +L++ K      +  
Sbjct: 8   NARVKAALALKRQRARNSSYFLLEGFREIHRALISGYHCLHVFCGELISDKERDLDKELT 67

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP----TLDAVRNSQLLMVLDH 140
           A      P    P + ++++  KE     +A+     LS      L         ++++ 
Sbjct: 68  ALGIEKLPC---PKEILERLSFKEHPDNFIAVFEKKRLSCQEFLRLQRKNQQPFYLIVEQ 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
              P NIGA+LR A     DG+I         +  + +S+ GA+  +P    ++L + L 
Sbjct: 125 AEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGAVFTVPI-WQASLEEVLA 183

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +    ++    +  ++     +     +A++ G+E  GL P   + +     L M G  
Sbjct: 184 LVREQEWKIFTTTPSTQTFYFDQNFCQPLAVVFGSEKDGLSPSWLDGSFCNIALPMLGKA 243

Query: 261 KALNVSNAAAVALYITQNHFAK 282
            +LN+S++ A   Y      ++
Sbjct: 244 DSLNLSSSVAAVAYEVVRQRSR 265


>gi|170728904|ref|YP_001762930.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|169814251|gb|ACA88835.1| tRNA guanosine-2'-O-methyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 231

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  +NI A++R+A A     I     +   E  V   +ASG+ + +  
Sbjct: 16  RQPDLTLCLDKVHKTNNIAAVIRTADAVGVHQIHAV--WPDIEMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+  ++ DA Q   +   Q +  + S++     +       A+ILG E  G+  +    A
Sbjct: 74  IKHYHMDDAQQAFRAQNMQVLATTFSETAVDFREIDYTRPTAIILGNERDGVSQEGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A+A+ +Y  Q   
Sbjct: 134 GQHIIIPMIGMVQSLNVSVASALVMYEAQRQR 165


>gi|110638315|ref|YP_678524.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280996|gb|ABG59182.1| tRNA and rRNA methylase [Cytophaga hutchinsonii ATCC 33406]
          Length = 249

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 86/246 (34%), Gaps = 9/246 (3%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +   K     Q  +         + G  +V   L +   KI +LL T    A+       
Sbjct: 4   KQTVKFTKSLQNKKFRRLYNQFIIEGEKSVLEVL-SSDFKIQKLLVTSYFHAKYKELLAP 62

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                ++      +D I   ++     A+    +    L      + ++ LD++NDP N+
Sbjct: 63  FSGI-IELAGDTELDSIGSLQSN--DAAIAVCAVNEVLLPETIKGEWVIALDNINDPGNL 119

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  +    II ++  +   +  +  ++ G+   +        TD    +     
Sbjct: 120 GTIIRIADWYGISKIICSEDTADFYNPKVINASKGSFLRVKVHY----TDLSAFLKQQRV 175

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
              G     +       K   I L++G E  G+    +   T M  +   G  ++LNV  
Sbjct: 176 SVYGADLHGENIHTASFKEVGI-LVMGNEAHGISEGVKACITQMLTIPRFGQAESLNVGI 234

Query: 268 AAAVAL 273
           A A+  
Sbjct: 235 ATAICC 240


>gi|224076677|ref|XP_002196774.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog [Taeniopygia guttata]
          Length = 198

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 24/185 (12%)

Query: 113 GLALETAPLLSPTLDAVRNSQL-----------LMVLDHVNDPHNIGAILRSAVAFSCDG 161
           G+ LE APL   +L      QL            +VL+H+ DP N+GA+LRSA     D 
Sbjct: 4   GVCLEAAPLPLRSLRDAEEPQLGHGERGNRQLLWLVLEHIQDPMNLGALLRSAYFLGVDR 63

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--- 218
           ++ T+  S   + V++K+++GA+E        +L   L+   + G++ +G  S  +    
Sbjct: 64  VVATRGNSCPLTPVVSKASAGAMEVFDVYGTDDLQGFLKAKSAEGWEVVGTVSRPEDVED 123

Query: 219 ----PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII-----KALNVSNAA 269
                  +   +  + +++G+EG+GL  +TQ+    M  +  PG        +LNVS AA
Sbjct: 124 VPVISCSEFQWDKPVIVVIGSEGEGLSLETQQQCQRMLAIP-PGRALHPGLDSLNVSVAA 182

Query: 270 AVALY 274
            + L+
Sbjct: 183 GILLH 187


>gi|34762513|ref|ZP_00143511.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887846|gb|EAA24916.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 261

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 6/184 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +  +++  +E   QG+ +        T D    S  L++LD V+DP N+G I+R  
Sbjct: 77  VVTRKIFEELSSQE-NSQGVIIL---YTKKTNDLKFLSNNLVILDDVSDPGNLGTIIRIC 132

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A +   II TK    + +  + +++ G++ ++    +   ++ +  +    +  I    
Sbjct: 133 DATNFKDIILTKSTVDAYNEKVIRASMGSILNVNLYYLEK-SEIINFLKENNYSIISTYL 191

Query: 215 D-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  P  +    +K A+I G EG G+             + +    ++LNV+ A  + L
Sbjct: 192 DKTAIPYNKIKLKEKNAIIFGNEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIIL 251

Query: 274 YITQ 277
           Y  +
Sbjct: 252 YKFR 255


>gi|218288912|ref|ZP_03493163.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241001|gb|EED08178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 249

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 3/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + + ++ V+D HN  AILRSA AF    +   +   P + +       GA + +  
Sbjct: 41  RTGYIAVAMEAVDDGHNQAAILRSAEAFGVQHVAVIEGKQPFQPSK--GVTQGAHKWLTI 98

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R+ ++  A+  +H+ GFQ       D  +P++        A++ G E  G+ P+ +E A
Sbjct: 99  HRMPSVGRAIDALHARGFQVYATDLGDGAEPIDAVDLARPTAILFGNEKDGVSPEARERA 158

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               ++ M G +++ NVS AAA+ALY     
Sbjct: 159 DGRFYIPMAGFVQSFNVSVAAAIALYELTRR 189


>gi|253569078|ref|ZP_04846488.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
 gi|251841097|gb|EES69178.1| tRNA/rRNA methyltransferase [Bacteroides sp. 1_1_6]
          Length = 175

 Score =  158 bits (400), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   + +  + +    L++VLD +   HNIG++ R++ AF  + I      +   
Sbjct: 4   LKITELNRISAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKI 229
              + K+A GA   + +  ++N  DA+  +   G+    +  ++    L+Q    K  K 
Sbjct: 64  HPEMHKTALGAEFTVDWKYVNNAVDAVDNLRKEGYIVYSIEQAEGSIMLDQLELDKTKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG++ +  + +     +   G   +LNVS    + ++
Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|329942536|ref|ZP_08291346.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Chlamydophila psittaci Cal10]
 gi|332287168|ref|YP_004422069.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
 gi|313847764|emb|CBY16754.1| 4.2.3 [Chlamydophila psittaci RD1]
 gi|325506488|gb|ADZ18126.1| putative rRNA methylase [Chlamydophila psittaci 6BC]
 gi|328815446|gb|EGF85434.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Chlamydophila psittaci Cal10]
 gi|328914413|gb|AEB55246.1| spoU rRNA methylase family protein [Chlamydophila psittaci 6BC]
          Length = 265

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/261 (21%), Positives = 97/261 (37%), Gaps = 9/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K+  +   K   + +     L G   +  AL++      ++        +    
Sbjct: 6   KNNPKVKE--AVALKHNRSRKGPVFLLEGFREIQKALDSGYE-CERIFCGTRVSEKEQSF 62

Query: 85  ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNS-QLLMVLD 139
            N     P++ V    +T+ K+  KE     +A+           L   RN     ++++
Sbjct: 63  LNAIQKLPIEKVYCLEETLSKLSYKEHHDNFIAVMKKRWWSREEFLAQKRNPLPFYLIIE 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GAILR A     DG+I         +  + +S+ G +  +P    + L   L
Sbjct: 123 QVEKPGNVGAILRIADGVGADGVILCDPVVDVYNPNVIRSSLGTVFTLPI-WSATLDQVL 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           Q +    +Q    S  +K     E  N  + L+ G+E  GL     +   S   L M G 
Sbjct: 182 QVILEEKWQAFVTSPRAKTMYFCENYNQPLVLVFGSEKDGLTASWLKGNFSKISLPMLGQ 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN+S A +   Y      
Sbjct: 242 ADSLNLSTAVSAVAYEVIRQR 262


>gi|110833674|ref|YP_692533.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110646785|emb|CAL16261.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
          Length = 230

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 9/170 (5%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESA 174
           E    +  TLD  R   L +++D V+ PHNI AI+R+  A     +     K  +     
Sbjct: 4   ERYRRICDTLDR-RQPDLTVIMDGVHKPHNIAAIVRTCDAVGILDVHAVLPKNRA----R 58

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
           + A +A G+   +   +    TD ++++   G Q +    SD      Q       AL+L
Sbjct: 59  MAAGTAMGSQRWVQVHKRDESTDVIRELQGQGVQVLAAHLSDDAIEYRQVDYTRPTALLL 118

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHFAK 282
           G E  G+  +          + M G++++ NVS AAA+ L    +   AK
Sbjct: 119 GTEKFGVSDEVASAVDQNVTIPMMGMVESFNVSVAAAIILSEACEQRRAK 168


>gi|209966487|ref|YP_002299402.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
 gi|209959953|gb|ACJ00590.1| RNA methyltransferase, TrmH family [Rhodospirillum centenum SW]
          Length = 265

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 102/247 (41%), Gaps = 12/247 (4%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN-ALARLDWDANLPHP-FPVKTVPPQ 99
             + P+   + G+  V+A       ++ +L   +    A   + A L     P + V  +
Sbjct: 20  KAAPPKPFRICGLPAVAAVFARDPDRVQRLFYEERHRQAVGPFCARLAEARKPYRLVEKE 79

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRS 153
            +D++ G   +H G+     P      +           + L++LD + +PHN+GAI+R+
Sbjct: 80  ELDRVAGT-PLHGGVVAVAEPRQVLPFNPDWAKRWAAEGRPLLLLDGIGNPHNLGAIVRT 138

Query: 154 AVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           A  F  D  +I+        S    + A G  E++   R      A++++    ++ +G 
Sbjct: 139 AAFFGLDRLVISDHPEQAQPSESAYRVAEGGFEYVQIYRADRFATAVRRLAES-YRVVGT 197

Query: 213 SSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +      L +        A++LG E  GL  +T      +A +   G +++LNV+  AA+
Sbjct: 198 ALGGHPALGRLTGGPKPPAVLLGNEEDGLPAETLRACAELATIPGAGQVQSLNVAATAAI 257

Query: 272 ALYITQN 278
             +    
Sbjct: 258 LAWEMTR 264


>gi|260907208|ref|ZP_05915530.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
          Length = 296

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 99/272 (36%), Gaps = 33/272 (12%)

Query: 40  SRHTSQP-ENLFLYGVHTVSAALNN----------------------PSRKIFQLLATKN 76
            RH+ +      + G   V  AL                        P   + +L  T+ 
Sbjct: 23  KRHSRKTMGQFLVEGPQAVREALERHAELGLPGQAPGVPDWVGSNADPRGAVIELFITEE 82

Query: 77  ALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQ 133
           A               ++   +  + + ++       QG+      +       + + +Q
Sbjct: 83  AAEAHPEFVETVKDCDIRWNIITDEVLTELSAT-VNSQGVVAVCERIDVDLTSVIDKEAQ 141

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VL  V DP N G I+R A A   D ++ T       +    +S +G+L H+P +   
Sbjct: 142 LIVVLSQVRDPGNAGTIIRLADAAGADAVVLTSSSVDIYNDKTVRSTAGSLFHVPVVTGV 201

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQET 247
            L +  +   + G Q +   + D    +            +   + G E  G+R +  E 
Sbjct: 202 GLAEVTELARARGLQILAADANDQSHDIHHPWDSGLDLTARTTWVFGNEAWGMRTEDLEL 261

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             S A + + G  ++LN++ AA+V +Y +  +
Sbjct: 262 CDSSAAVPIYGKAESLNLATAASVCIYESARN 293


>gi|163839504|ref|YP_001623909.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162952980|gb|ABY22495.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 300

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 94/279 (33%), Gaps = 33/279 (11%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR--------KIFQLLATKNALA 79
           +D  K+     ++R           G   V  AL              + ++ A++  L 
Sbjct: 22  KDVAKLAGRPSRTRRR----QFLAEGPQAVREALRAHRDCLAAGGNAVVDEVYASRGCLD 77

Query: 80  RLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMV 137
           R      L    P ++      +  +       QG+      +  P  + +    QL+ +
Sbjct: 78  RYPDFEELTESGPQIRIASELVLSAMADT-VKPQGIIAVCRFVDVPLQEVLAAKPQLIAM 136

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  V DP N G +LR+A A   D +I +       +    +S  G+L H+P +  ++  +
Sbjct: 137 LCRVQDPGNAGTVLRAADAAGADAVIFSNSSVDVYNPKAVRSTVGSLFHLPVVLGADPAE 196

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQ------------------EIKNDKIALILGAEGKG 239
             ++    G   +         L+Q                             G E +G
Sbjct: 197 VARQCRIAGIGVLAADGYGALNLDQLQDESAARSFDQETPESAYPLEQPTLWFFGNEAQG 256

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L  +  E A     + + G  ++LNV  AA V LY +  
Sbjct: 257 LSTEELEAADHRVAVPVHGSAESLNVGTAATVCLYASAR 295


>gi|77361707|ref|YP_341282.1| tRNA guanosine-2'-O-methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876618|emb|CAI87840.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 228

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 7/155 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R + L + L+ V+  HN+ AI+RSA A  C  +       P     L   ++ G+   + 
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHV---HAVWPENQKWLTNNTSGGSKNWLE 72

Query: 189 YIRISNLTDALQKMHSWG--FQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                N+ DA   M +     Q +     +      +       A+I+G E  G+  +  
Sbjct: 73  THLHKNIDDAATAMRARNPDIQILATHLSTDAVDFREIDYTKPTAIIVGQEKTGISEQAL 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS AAA+ L+  Q   
Sbjct: 133 KHADQNIIIPMQGMVQSLNVSVAAALILFEAQRQR 167


>gi|226327607|ref|ZP_03803125.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
 gi|225204133|gb|EEG86487.1| hypothetical protein PROPEN_01478 [Proteus penneri ATCC 35198]
          Length = 229

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 5/155 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEH 186
           A+R   L + L+ V+  HN+ A++R+A A     I       P E   +L   A+G+   
Sbjct: 3   AMRQPDLTICLEEVHKSHNVAAVIRTADAVGIPKI---HAIWPEEKMRMLVSPAAGSNSW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       +TDA+    + G Q +    SD      +        +I+G E  G+     
Sbjct: 60  VNVETHPTITDAVGAFRTQGMQVLATHLSDKAVDFREIDYTRPTCIIMGQEKTGISQDAI 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 120 ALADQDIIVPMMGMVQSLNVSVASALILYEAQRQR 154


>gi|153807072|ref|ZP_01959740.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
 gi|149130192|gb|EDM21402.1| hypothetical protein BACCAC_01349 [Bacteroides caccae ATCC 43185]
          Length = 175

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   + +  + +    L++VLD +   HNIG++ R++ AF  + I      +   
Sbjct: 4   LKITELNRISAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKI 229
              + K+A GA   + +  + N  DA+  +   G+    +  ++    L+  +  K+ K 
Sbjct: 64  HPEMHKTALGAEFTVDWKYVDNAVDAVDNLRKAGYMVYSVEQAEGSIMLDELELDKSKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG++ +    +     +   G   +LNVS    + ++
Sbjct: 124 AIVMGNEVKGVQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|299145105|ref|ZP_07038173.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
 gi|298515596|gb|EFI39477.1| RNA methylase, SpoU family [Bacteroides sp. 3_1_23]
          Length = 175

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +     V    L++VLD +   HNIG++ R++ AF  + I      +      + K+A G
Sbjct: 14  AEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKG 239
           A   + +  ++N  DA+  + + G+    +       +  E    K  K A+++G E KG
Sbjct: 74  AEFTVDWKYVNNAVDAVDNLKNEGYIVYSVEQAEGSIMFDELQLDKTKKYAIVMGNEVKG 133

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ +    +     +   G   +LNVS    + ++
Sbjct: 134 VQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|154493345|ref|ZP_02032665.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
           43184]
 gi|154086555|gb|EDN85600.1| hypothetical protein PARMER_02682 [Parabacteroides merdae ATCC
           43184]
          Length = 176

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 3/164 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L        +   L++VLDHV   +N+G++ R++ AF  + I      +    A + K+A
Sbjct: 12  LTPEAFKDSKKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPPHAEIHKTA 71

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEG 237
            GA E + +    +  +A+ K+   G+    +  ++    L+     KN K A+I+G E 
Sbjct: 72  LGAEETVDWEYFEDTMEAVDKLKQQGYTVCAVEQAEGSTMLDNLLLDKNKKYAVIMGNEV 131

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           KG++    +       +   G   +LNVS    + ++      +
Sbjct: 132 KGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQLS 175


>gi|167622328|ref|YP_001672622.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|167352350|gb|ABZ74963.1| tRNA guanosine-2'-O-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 228

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  +NI A+LR+A A     +     +S  E  V   +ASG+ + +  
Sbjct: 16  RQPDLTVCLDTVHKGNNIAAVLRTADAAGIHEVHAV--WSELEMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++  A+ +      Q +  + SD+     +       A+ILG E  G+ P     A
Sbjct: 74  RVHQSMQQAVDEFRGKEMQILATTFSDTAVDFREIDYTRPTAIILGNERDGVSPAGIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA+ +Y  Q   
Sbjct: 134 DQHIIIPMIGMVQSLNVSVAAALIMYEAQRQR 165


>gi|193214688|ref|YP_001995887.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088165|gb|ACF13440.1| tRNA guanosine-2'-O-methyltransferase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 219

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 3/158 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L   R   L +V+++VN  HN+ AI+R+  A     +         E      SASGA
Sbjct: 13  KRLLDKRQPDLTVVMENVNKAHNLAAIIRTCDAVGIPKVHAVALR--PEIRTKQNSASGA 70

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              +     ++  D    +   GFQ      S               AL++GAE +G+  
Sbjct: 71  NRWVDVQIHNSTEDVFSTLRQGGFQIFVAHFSPQATDFRAVDFTKPTALVVGAEWEGISE 130

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                A    ++ M G++++LNVS A A+ L+  Q   
Sbjct: 131 TAISLADGSLYVPMVGMVESLNVSVATAIMLFEAQRQR 168


>gi|315618645|gb|EFU99231.1| tRNA (guanosine-2'-O-) methyltransferase [Escherichia coli 3431]
 gi|320193842|gb|EFW68475.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli WV_060327]
          Length = 206

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISNLT 196
           ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   +       + 
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSWVQVKTHRTIG 57

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           DA+  +   G Q +    SD+     +        +++G E  G+  +    A     + 
Sbjct: 58  DAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIP 117

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G++++LNVS A+A+ LY  Q   
Sbjct: 118 MIGMVQSLNVSVASALILYEAQRQR 142


>gi|270265372|ref|ZP_06193633.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
 gi|270040776|gb|EFA13879.1| hypothetical protein SOD_m01040 [Serratia odorifera 4Rx13]
          Length = 147

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L+ V +PHN+GAI+RS   F  +G++     +  ES    ++A G  EHI  I   + 
Sbjct: 2   LALEEVGNPHNLGAIVRSCAHFGVNGVLLQDP-AVLESGAAVRTAEGGAEHIKAINADDF 60

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L      G+  +  SS    PL Q     K+ L+LG E  GL     +       + 
Sbjct: 61  LSVLDTFRKAGYTIVTTSSHKGTPLAQAKLPSKMVLVLGQERDGLSDSAWQQGDMSVSIG 120

Query: 256 MPGIIKALNVSNAAAVAL--YITQNH 279
             G +++LNVS A  + L  +  QN 
Sbjct: 121 GTGKVESLNVSVATGILLADWWRQNQ 146


>gi|239815595|ref|YP_002944505.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
 gi|239802172|gb|ACS19239.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus S110]
          Length = 264

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 14/255 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLD 82
            R++   K+++   Q      +   ++L G H   AAL    R    + +      A  +
Sbjct: 12  SRDNPLLKELRKLAQDPGAYRRLGRVWLEGDHLCRAALARGIRPAVAVFSESFWPSAPAE 71

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           W ++         V    +  + G E+    G  L+         DA       +VLD +
Sbjct: 72  WASSAIKTV---VVDDDLLRAVSGLESPAPMGFVLDLPARPELLPDAPS-----VVLDRL 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N G+ILRSA AF    +I  K  +   +  + ++  GA   +  I      DAL +
Sbjct: 124 QDAGNAGSILRSAAAFGFKQVIALKGTAALWAPKVLRAGMGAHFGLRLIEGVE-ADALDE 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +       +  SS     L +       A +LG EG+G+    +  A+    +  PG  +
Sbjct: 183 LK---VPLVATSSHRGDWLHEARLPHPCAWLLGHEGQGVSAALEARASHHIRIAQPGGEE 239

Query: 262 ALNVSNAAAVALYIT 276
           +LNV+ AAA+ L+ +
Sbjct: 240 SLNVAAAAAICLHAS 254


>gi|160884851|ref|ZP_02065854.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|237716991|ref|ZP_04547472.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|237722042|ref|ZP_04552523.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262405759|ref|ZP_06082309.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|293369284|ref|ZP_06615871.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|294646957|ref|ZP_06724575.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294806791|ref|ZP_06765617.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|298483224|ref|ZP_07001403.1| RNA methylase, SpoU family [Bacteroides sp. D22]
 gi|156109886|gb|EDO11631.1| hypothetical protein BACOVA_02841 [Bacteroides ovatus ATCC 8483]
 gi|229442974|gb|EEO48765.1| tRNA/rRNA methyltransferase [Bacteroides sp. D1]
 gi|229448911|gb|EEO54702.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|262356634|gb|EEZ05724.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_22]
 gi|292635614|gb|EFF54119.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292637679|gb|EFF56079.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294445961|gb|EFG14602.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|295085812|emb|CBK67335.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
 gi|298270541|gb|EFI12123.1| RNA methylase, SpoU family [Bacteroides sp. D22]
          Length = 175

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +     V    L++VLD +   HNIG++ R++ AF  + I      +      + K+A G
Sbjct: 14  AEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKG 239
           A   + +  ++N  DA+  + + G+    +  ++    L+  Q  K  K A+++G E KG
Sbjct: 74  AEFTVDWKYVNNAVDAVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKG 133

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ +    +     +   G   +LNVS    + ++
Sbjct: 134 VQQEVINHSDGCIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|89898599|ref|YP_515709.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89331971|dbj|BAE81564.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 265

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 99/261 (37%), Gaps = 9/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K+  +   K   + +     L G   +  AL++      ++    N   +    
Sbjct: 6   KNNPKVKE--AVALKLNRSRKGPLFLLEGFREIQKALSSGYE-CERIFYGTNVTEKERSF 62

Query: 85  ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNS-QLLMVLD 139
            N     P++ V    +T+ ++  KE     +A+           L+  +N     ++++
Sbjct: 63  FNRIQKMPLEKVYCSEETLSRLSYKEHHDNFIAVMKKRWWSRKEFLNQKKNPLPFYLIIE 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GA+LR A     DG++         +  + +S+ G +  +P    + L + L
Sbjct: 123 QVEKPGNVGALLRIADGVGADGVVLCDPIVDLYNPNVIRSSLGTVFTLPI-WSATLEEVL 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           Q +    +Q    +  +      E  N  +AL+ G+E  GL         S   L M G 
Sbjct: 182 QTLSEEKWQVFVTTPRASSLYFCENYNQPLALVFGSEKDGLTSSWLNGDFSKISLPMLGQ 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN+S A +   Y      
Sbjct: 242 ADSLNLSTAVSAVAYEVIRQR 262


>gi|148240118|ref|YP_001225505.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
 gi|147848657|emb|CAK24208.1| tRNA (Guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7803]
          Length = 229

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 15/171 (8%)

Query: 120 PLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           PLL    + +R       + L ++++HV  PHN+ AILRS  A         + ++ S S
Sbjct: 2   PLLPRRFERLRTVLNQRMADLTVLVEHVEKPHNLSAILRSCDAVGV-----LEAHAVSFS 56

Query: 174 ---AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKI 229
                   +A G+   +P    + +  A+  +   GF+  G +     +           
Sbjct: 57  GRPRTFNSTAQGSQRWVPLRDHATIASAVHHLKDRGFKLYGTNLGVDARDYRDCDFTGPC 116

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A +LGAE  GL  +          + M G++++LNVS A A  L+      
Sbjct: 117 AFVLGAEKWGLTEEATGLMDQAVFIPMRGMVQSLNVSVATATLLFEALRQR 167


>gi|53711292|ref|YP_097284.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60679598|ref|YP_209742.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           NCTC 9343]
 gi|253564599|ref|ZP_04842056.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|255011970|ref|ZP_05284096.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           3_1_12]
 gi|265764737|ref|ZP_06093012.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|313149806|ref|ZP_07811999.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|52214157|dbj|BAD46750.1| tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60491032|emb|CAH05780.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           NCTC 9343]
 gi|251948375|gb|EES88657.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263254121|gb|EEZ25555.1| tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_16]
 gi|301161080|emb|CBW20617.1| putative SpoU rRNA methylase family protein [Bacteroides fragilis
           638R]
 gi|313138573|gb|EFR55933.1| tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 175

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   +++  + +    L++VLD +   HNIG++ R+A AF  + I      +   
Sbjct: 4   LKITELNRISIEEFKEADKLPLVVVLDDIRSLHNIGSVFRTADAFRIECIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKI 229
              + K+A GA   + +  ++N  + +  + S G+    +  ++    L++    ++ K 
Sbjct: 64  HPEMHKTALGAEFTVDWKYVNNAVETVDNLRSEGYVVYSVEQAEGSIMLDELTLDRSKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG++ +  + +     +   G   +LNVS  A + ++
Sbjct: 124 AVVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|134101781|ref|YP_001107442.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291009830|ref|ZP_06567803.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914404|emb|CAM04517.1| 23S ribosomal RNA methyltransferase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 235

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 9/229 (3%)

Query: 58  SAALNNPSR---KIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
             AL   +     + ++ AT +       D       PV+ V  +     + +    QGL
Sbjct: 2   REALAAHAEGATAVREVFATGDPRHDELLDTARAASVPVRLVT-ERAAASLSETVTPQGL 60

Query: 115 ALETA-PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                 P  +          L+ VL  ++DP N G ++R A A     ++       + +
Sbjct: 61  VAVCDLPATAVADALAARPALVAVLVGISDPGNAGTVVRVADAAGAGAVLFAGDTVDAFN 120

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KI 229
               ++++G+L H+P  R  +++         G + +G    +   L+            
Sbjct: 121 GKAVRASTGSLFHLPVARDRDVSAVFAACREAGLRLVGADGHATDDLDSADLGGALAAPT 180

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A + G+E  GL             + + G  ++LN++ AAAV LY +  
Sbjct: 181 AWVFGSEAHGLPGDVTAQLDGTLRVPLYGRAESLNLATAAAVCLYASAR 229


>gi|327404354|ref|YP_004345192.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327319862|gb|AEA44354.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 242

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 15/243 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S +QK +         + G   V   +      +  ++ ++    ++    +    
Sbjct: 10  KWVRSLHQK-KMRDLESIFIVEGEKLVLEGIQMGLSNLEMIITSEAFFDQIPASLHFKT- 67

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
               TV  + ++++   +  ++ LA+            +      +VLD V DP N+G +
Sbjct: 68  ---FTVSTKELEQVSELKTPNKCLAIFKREKY-----TLLEKSFTLVLDGVQDPGNMGTM 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR A  F    +I +K      ++ + +S+ GA+  IP   + +L   L+      F   
Sbjct: 120 LRLADWFGVKQVICSKDTVDCYNSKVIQSSMGAIYRIPVHYL-DLASYLKDNQQQKF--- 175

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G         ++        LI+G EGKG+RP+ +        +   G  ++LNV+ A A
Sbjct: 176 GAMLHG-TNYKKVSYPKDSILIMGNEGKGVRPEIEALFDVPVTIPRYGEAESLNVATATA 234

Query: 271 VAL 273
           + L
Sbjct: 235 ILL 237


>gi|33592532|ref|NP_880176.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
 gi|33572178|emb|CAE41724.1| putative RNA methyltransferase [Bordetella pertussis Tohama I]
 gi|332381950|gb|AEE66797.1| putative RNA methyltransferase [Bordetella pertussis CS]
          Length = 257

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 94/263 (35%), Gaps = 18/263 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            R++   K +           +   + L GVH   A L +    +  L      +ARLD 
Sbjct: 6   SRDNPAVKALHKLAAGG--GRRDGRILLDGVHLCQAWLAHQGTPLQALF----DVARLDH 59

Query: 83  -WDANLPHPFPVKT---VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                L    P +    +  + +  +   E+  QG+            + +  +   ++ 
Sbjct: 60  PEIRALAGQVPPQHCLALDSRLLQGLASVESG-QGVVFVARAPEPALPERIDEN--CVLF 116

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+G +LR+  A     ++     + + S  + +S  GA   +      +L   
Sbjct: 117 DRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAV 176

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-P 257
           L ++       +  +      L       + A + G EG+G+       A    H+    
Sbjct: 177 LPRL---DVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHES 233

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
             +++LNV  AAA+ L+  +   
Sbjct: 234 AAVESLNVGAAAAICLFEQRRQR 256


>gi|284989407|ref|YP_003407961.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284062652|gb|ADB73590.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 269

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 106/244 (43%), Gaps = 15/244 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D++ +++ ++          + + GV  V   L +P R +  +L     LA LD    LP
Sbjct: 18  DFRDLKAGDRPPGTERGTGPVIVEGVPAVERLLTSPYR-VRAVLGVPGRLAALD----LP 72

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN------SQLLMVLDHVN 142
              P        + +++G     +G+           LDA+         + L VL+ +N
Sbjct: 73  EGVPAYEADKWVLSEVIGFRLT-RGVLASADRRPPADLDALLTGPDPAAPRRLAVLEALN 131

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+I RSAVA   DG++   R +        + + G +  +P+  + +    L ++
Sbjct: 132 DAENLGSIARSAVALGVDGLLLDPRCADPLYRRSVRVSMGHVLALPFAALPDWPGGLDRL 191

Query: 203 HSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           H  G+ T+ L+  +    L +       + A++LGAEG GL P+ Q  A   A + M   
Sbjct: 192 HDAGYLTVALTPAEDAVDLAEVDPRAHPRTAVLLGAEGPGLTPQAQRAARVRARIPMRTG 251

Query: 260 IKAL 263
           + +L
Sbjct: 252 VDSL 255


>gi|302831964|ref|XP_002947547.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
           nagariensis]
 gi|300267411|gb|EFJ51595.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
           nagariensis]
          Length = 620

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 101/296 (34%), Gaps = 73/296 (24%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL---------PHPFPVKTVPPQTI 101
           LYGV  V AAL    RK+ +     +       DA L              V       +
Sbjct: 245 LYGVFPVLAALRAKRRKVHRAFILSSMDLSKRKDAGLVRQVEALCSEAGVEVVRTGRHEL 304

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRN-----------SQLLMVLDHVNDPHNIGAI 150
           + ++  +  HQ   ++  P     + A                + + LD V DP N+GA+
Sbjct: 305 N-LMSYDRPHQLAEMDEFPPADEVIAAAAGAVHGGAAGTAAPPVWLALDEVVDPQNLGAV 363

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RSA      G++   R     SAV++K+++GALE +      NL   L         T+
Sbjct: 364 VRSAYCLGAGGVLACARNCAPLSAVVSKASAGALEALQVHSCRNLPRTLMDARDRKGWTV 423

Query: 211 --GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----------- 257
               +    + + + + +    L+LG+EG GLR   +   + +  + M            
Sbjct: 424 LGAAAGSGSEAVGRVVVDRPTILVLGSEGFGLRTNVRRACSGLVRVDMAPPTTARAGRGI 483

Query: 258 ---------------------------------------GIIKALNVSNAAAVALY 274
                                                  G++ +LNVS A  + L+
Sbjct: 484 SIPSSADDADAAVATNLRQPLPPSPPLPRQQQPQHAVLRGLVDSLNVSVATGILLH 539


>gi|33596189|ref|NP_883832.1| putative RNA methyltransferase [Bordetella parapertussis 12822]
 gi|33573192|emb|CAE36844.1| putative RNA methyltransferase [Bordetella parapertussis]
          Length = 274

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 18/272 (6%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           ++ +      R++   K +           +   + L GVH   A L +    +  L   
Sbjct: 14  VRRAMKHLSSRDNPAVKALHKLAAGG--GRRDGRILLDGVHLCQAWLAHQGTPLQALF-- 69

Query: 75  KNALARLD--WDANLPHPFPVKT---VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
              +ARLD      L    P +    +  + +  +   E+  QG+            + +
Sbjct: 70  --DVARLDHPEIRALAGQVPPQHCLALDSRLLQGLASVESG-QGVVFVARAPEPALPERI 126

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +   ++ D + DP N+G +LR+  A     ++     + + S  + +S  GA   +  
Sbjct: 127 DEN--CVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHI 184

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   L ++       +  +      L       + A + G EG+G+       A 
Sbjct: 185 HEHLDLEAVLPRL---DVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAA 241

Query: 250 SMAHLHM-PGIIKALNVSNAAAVALYITQNHF 280
              H+      +++LNV  AAA+ L+  +   
Sbjct: 242 LRVHIPHESAAVESLNVGAAAAICLFEQRRQR 273


>gi|218675158|ref|ZP_03524827.1| probable RNA methylase protein [Rhizobium etli GR56]
          Length = 274

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 11/245 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL-----NNPSRKIFQLLATKNALAR-LDWDANLPHPFP 92
           + R  +  EN F+     V   L          +  ++L  +N +   L      P   P
Sbjct: 23  RERDLTGRENRFIAEGTVVLRMLAEAHAQGRGFRAEKILLLRNRVEGILPILERFPADVP 82

Query: 93  VKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           V       ++ IVG   +H+G+           +  LDA+    L++V   +++  N G+
Sbjct: 83  VYVAEADALEGIVGFH-LHRGVLALGRREERDEAALLDALPERALVLVGCGISNHDNAGS 141

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A AF  D ++  +           + + G++  +P+ R     D L  +   GF  
Sbjct: 142 MFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLSVPHRRGGKALDLLLALAERGFAI 201

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             LS   K  +       ++AL++G EG+GL           A +     + +LN + A 
Sbjct: 202 WTLSPHGKTDIRVIPAAARMALVVGTEGEGLPAALLARF-QSARIPQSDELDSLNAATAT 260

Query: 270 AVALY 274
            +AL+
Sbjct: 261 GIALF 265


>gi|228474088|ref|ZP_04058829.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274602|gb|EEK13443.1| tRNA/rRNA methyltransferase [Capnocytophaga gingivalis ATCC 33624]
          Length = 250

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 96/245 (39%), Gaps = 21/245 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +Q  +QK +H S+     + G  ++   +     K   + AT    A L         
Sbjct: 8   KLVQKLSQK-KHRSETGLFVVEGKKSIVEFVEAGY-KAEVIYATDTFSASLGQQ------ 59

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P+  V  + + K+   +   +G+A+   P     L       L++ LD++ DP N+G +
Sbjct: 60  -PLTLVSKEELSKLSTLKHPDEGVAIFRQPKRKGIL----QEGLILALDNIQDPGNLGTL 114

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F  + ++ +++     +  + +++ G+L  +    +  L   L           
Sbjct: 115 IRLCDWFGIETLLCSEQTVDCYNPKVVQASMGSLSRVEVHYLP-LAGFLVTC---DLPVY 170

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSN 267
             +  + + L      +   ++LG E  G+ P+    A     +   G     ++LNV+ 
Sbjct: 171 VATL-AGEDLYTTTFPEDCVIVLGNEANGVSPEVAALANGAITIPRFGKRQQAESLNVAM 229

Query: 268 AAAVA 272
           A A+ 
Sbjct: 230 AGAII 234


>gi|325299402|ref|YP_004259319.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324318955|gb|ADY36846.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 178

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 3/164 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             E   L        +   L++VLD V   HNIGA+ R++ AF  D I      +     
Sbjct: 9   VTEMNRLTVEEFKEAKKIPLVVVLDDVRSLHNIGAVFRTSDAFLVDCIYLCGITATPPHP 68

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIAL 231
            + K+A GA   + +    +  DA+ ++ + G+    +       L  ++    + K A+
Sbjct: 69  EMHKTALGAEYTVDWKYFQHTEDAVNELRTMGYTLFAIEQCEGSILLDKLVLEPDKKYAV 128

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +LG E KG++ +          +   G   +LNVS  A + ++ 
Sbjct: 129 VLGNEVKGVKQEVVNLCDGCIEIPQFGTKHSLNVSVTAGIVIWE 172


>gi|313647474|gb|EFS11924.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|320179989|gb|EFW54931.1| tRNA guanosine-2'-O-methyltransferase [Shigella boydii ATCC 9905]
 gi|332084833|gb|EGI90016.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 5216-82]
 gi|332089513|gb|EGI94617.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella boydii 3594-74]
 gi|332749893|gb|EGJ80305.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-671]
 gi|332750609|gb|EGJ81017.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri
           4343-70]
 gi|332997445|gb|EGK17061.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-218]
 gi|333013287|gb|EGK32659.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella flexneri K-227]
          Length = 206

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISNLT 196
           ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   +       + 
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSWVQVKTHRTIG 57

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           DA+  +   G Q +    SD+     +        +++G E  G+  +    A     + 
Sbjct: 58  DAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIP 117

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G++++LNVS A+A+ LY  Q   
Sbjct: 118 MIGMVQSLNVSVASALILYEAQRQR 142


>gi|256389787|ref|YP_003111351.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256356013|gb|ACU69510.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 272

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 99/248 (39%), Gaps = 8/248 (3%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +H+    RN R +++ Q+     +   +     + GV  ++ A     R I +LL   + 
Sbjct: 3   AHHRVASRNAR-FQQWQTLLTNRQKRQRAGRFLVQGVRPLTLAAEQGWR-IEELLVDDDR 60

Query: 78  L----ARLDWDANLPHPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRN 131
                A    DA       V  +P   + ++    +EA  + LA+   P        + +
Sbjct: 61  RLSRWAEDFLDAAHTADADVIALPADMLAELGEKDQEAAPELLAVVAMPPDDLIRIQITD 120

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L +  D    P N+G ++RSA AF  DG++ T   +        ++++G+L  +P +R
Sbjct: 121 TFLGVAFDRPAQPGNLGTLIRSADAFGADGVVVTGHAADVYDPRTVRASTGSLFGLPTVR 180

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +  + L+ +   G   +G   D    +E          ++G E  G+    +E    +
Sbjct: 181 TQSHREVLEWLSETGVTVVGTDEDGDTDIEDYDFCAPTLFVVGNEAVGMSTGWREACDRV 240

Query: 252 AHLHMPGI 259
             + M G 
Sbjct: 241 LSIPMRGT 248


>gi|260172783|ref|ZP_05759195.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|315921069|ref|ZP_07917309.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|313694944|gb|EFS31779.1| tRNA/rRNA methyltransferase [Bacteroides sp. D2]
          Length = 175

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +     V    L++VLD +   HNIG++ R++ AF  + I      +      + K+A G
Sbjct: 14  AEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKG 239
           A   + +  ++N  D +  + + G+    +  ++    L+  Q  K  K A+++G E KG
Sbjct: 74  AEFTVDWKYVNNAVDVVDNLKNEGYIVYSVEQAEGSIMLDELQLDKTKKYAIVMGNEVKG 133

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ +  + +     +   G   +LNVS    + ++
Sbjct: 134 VQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|33240822|ref|NP_875764.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238351|gb|AAQ00417.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 264

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 26/229 (11%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--- 115
            AL   +R    +   +     L+    +P    + +V    +   +       G+A   
Sbjct: 30  EALQTGARPSEIVATPEWIEDNLELLKRIPSQVKLNSVTQSVLQASL-TTVNPNGVASIF 88

Query: 116 -LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            L   P  S        S  ++ LD + DP N+G + R+A+A   D +      +     
Sbjct: 89  PLSVLPQPSD------QSNFVLALDRLQDPGNLGTLFRTALAADVDLVWLALG-ADPLGQ 141

Query: 175 VLAKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGLSSD------SKKPL 220
            + +S++GA+  +P+ R        I+ L + L+K    GFQ +G  S       +  P 
Sbjct: 142 KVLRSSAGAVLKLPFQRLGGAEKHSINELVEKLEKARKQGFQIVGTYSPNSCHVLAVSPY 201

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            +        L+LG EG G+ P  Q+  T    L     +++LNV++AA
Sbjct: 202 WELDWTKPTVLVLGNEGDGVHPTIQDCCTHSVSLPHNQQVESLNVASAA 250


>gi|91794292|ref|YP_563943.1| tRNA guanosine-2'-O-methyltransferase [Shewanella denitrificans
           OS217]
 gi|91716294|gb|ABE56220.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella denitrificans
           OS217]
          Length = 233

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + LD V+  +NI A++RSA       I     +   +  V   +ASG+ + +  
Sbjct: 16  RQIDLTVCLDKVHKTNNIAAVIRSADCVGIHQIHAV--WPDIDMRVSGNTASGSQQWVKT 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           I+     +A Q  ++   Q +  + SD+             A+++G E  G  P+    A
Sbjct: 74  IKHYRFEEAEQAFNAQNMQILTTTFSDTAVDYRDIDYTKPTAIVMGNERDGTSPEAIAAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    + M G++++LNVS AAA+ +Y  Q   
Sbjct: 134 SQHILIPMIGMVQSLNVSVAAALVMYEAQRQR 165


>gi|332084466|gb|EGI89661.1| tRNA (guanosine-2'-O-) methyltransferase [Shigella dysenteriae
           155-74]
          Length = 206

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISNLT 196
           ++ V+ PHN+ AI+R+A A     +       P +    +A +A+G+   +       + 
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGNRMRTMASAAAGSNSWVQVKTHRTIG 57

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           DA+  +   G Q +    SD+     +        +++G E  G+  +    A     + 
Sbjct: 58  DAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIP 117

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G++++LNVS A+A+ LY  Q   
Sbjct: 118 MIGMVQSLNVSVASALILYEAQRQR 142


>gi|329944512|ref|ZP_08292677.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328530277|gb|EGF57156.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 304

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 15/240 (6%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHP 90
           +   N +++H        + G   V  A+ +   ++  +  T+ A+ R    W   +   
Sbjct: 55  LSRRNARTKHRR----FLVEGPQGVREAIRHTPERVLDVYLTEAAVERHGEIWHEAVAAE 110

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL----SPTLDAVRNSQLLMVLDHVNDPHN 146
             V     Q +D +       QG+    A            A+  ++L+ VL    DP N
Sbjct: 111 RYVHVASEQVMDAMSTDA---QGVLAVVAAAEVTGSEALATALDGARLVAVLTQAQDPGN 167

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
            G I+R+A A   D ++  +      +  + +S +G+L H+P I    L DA+  +H  G
Sbjct: 168 AGTIIRAADAAGADAVVLVRGSVDPTAPKVVRSTAGSLFHLPVITGVALDDAVAALHEAG 227

Query: 207 FQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +         L +   +     A +LG E  GL  +    A ++  + + G  ++LN
Sbjct: 228 LTVLAADGRGDFDLFEAESLLEAPSAWLLGNEAHGLPSEALSRADAVVSIPIYGKAESLN 287


>gi|329963702|ref|ZP_08301148.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328527712|gb|EGF54704.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 216

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 72/154 (46%), Gaps = 3/154 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                 R   L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA
Sbjct: 55  EEFKEARKLPLVIVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGA 114

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGL 240
              + +  ++N  +A+  +   G+    +  ++    L++    K  K A+++G E KG+
Sbjct: 115 EFTVDWKYVNNSVEAVDNLKKEGYVVYSVEQAEGSIMLDELTLDKTKKYAIVMGNEVKGV 174

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +  + +     +   G   +LNVS  A + ++
Sbjct: 175 QQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIW 208


>gi|83590588|ref|YP_430597.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
           39073]
 gi|83573502|gb|ABC20054.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
           39073]
          Length = 272

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 15/248 (6%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARL 81
           N+R  K  +S   +S    +     + G+H +  AL   +     L    + T +   +L
Sbjct: 8   NNRYVKLARSLQDRS-WREKKGLYLIEGIHLLEEALQAGTSLEVVLHSPRIFTTSRGEKL 66

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-------VRNSQL 134
                    +    V  + +  I        G+    AP+ +  L         + +  L
Sbjct: 67  VAGLQRA-GYQCLAVTEELMAGI-STTMTPPGIVA-VAPMQAKNLAELLAVTSPLHSPPL 123

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++   + DP N+G I R+A+     G+I T+      +  + +SA GA   +P      
Sbjct: 124 FIIAAGIQDPGNLGTIWRTALGAGATGLILTRGCVDPYNPKVVRSAMGATFRLPVAGGVE 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                +K+   G + +     +   L Q      +ALI+G+E  G  P+    AT    +
Sbjct: 184 PALLARKLQDAGLKLVVADVGAPLTLWQVDLRPPLALIVGSENHGPGPELLAAATERVGI 243

Query: 255 HMPGIIKA 262
            + G + +
Sbjct: 244 PLVGPVDS 251


>gi|119472959|ref|ZP_01614815.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119444628|gb|EAW25938.1| tRNA (Guanosine-2'-O-)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 228

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 7/157 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R + L + L+ V+  HN+ AI+RSA A  C  +       P     L   ++ G+   + 
Sbjct: 16  RQTDLTVCLEDVHKHHNLSAIVRSADAVGCHHV---HAVWPENQKWLTNNTSGGSKNWLE 72

Query: 189 YIRISNLTDALQKMHSWG--FQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                N+ DA   M       Q +    S+      +       A+I+G E  G+  +  
Sbjct: 73  THLHKNIDDAATMMRQHNPNVQILATHLSEDAVDFREIDYTKPTAIIVGQEKTGISAQAL 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A     + M G++++LNVS AAA+ L+  Q+   K
Sbjct: 133 KHADQNIIIPMQGMVQSLNVSVAAALILFEAQHQREK 169


>gi|145219814|ref|YP_001130523.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205978|gb|ABP37021.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 232

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 3/169 (1%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +      L    + A R   L +V+D+VN PHN+ AI+RS  A     +      S    
Sbjct: 1   MIAPERFLRIKKMLASRQPDLTVVMDNVNKPHNLSAIIRSCDAVGIHDLYAV--SSKKSI 58

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
                +A+GA          ++    +K+   G Q +  + ++  +           A++
Sbjct: 59  HTTQNAAAGAGRWTNLHLRKDIGTLCRKLGMEGMQVLAATNTEESRDFRTIDFTLPTAIV 118

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           LGAE +G+  +  + A     + M G++++LNVS AAA+ L+  +   +
Sbjct: 119 LGAEWEGVSAEAIQAADMAITIPMYGMVESLNVSVAAALILFEAERQRS 167


>gi|71282637|ref|YP_271614.1| tRNA guanosine-2'-O-methyltransferase [Colwellia psychrerythraea
           34H]
 gi|71148377|gb|AAZ28850.1| tRNA (guanosine-2'-O-)-methyltransferase [Colwellia psychrerythraea
           34H]
          Length = 235

 Score =  156 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R   L + ++ ++  HN+ A++R+  A     +        SE A +   SA+G+   I 
Sbjct: 16  RQPDLTVCMEGLHKSHNLAAVVRTCDAIGISDV---HAVWKSEEAEVRGGSAAGSQNWID 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                   DA+  + + G Q +  + SD+     +       A+ILG E  G   +  E 
Sbjct: 73  VHNYHKTADAIAALKAQGMQVLVTNLSDTAVNFTEIDYTKPTAIILGQEKFGTSEEALEL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A     + M G++++LNVS A +V LY  Q   A
Sbjct: 133 ADQHIVIPMVGMVQSLNVSVACSVVLYEAQRQRA 166


>gi|228470153|ref|ZP_04055062.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
 gi|228308291|gb|EEK17146.1| RNA methyltransferase, TrmH family [Porphyromonas uenonis 60-3]
          Length = 262

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 100/251 (39%), Gaps = 11/251 (4%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           H + K ++S  Q +++  Q       G   +   L  P+ +   L+ T   +  L     
Sbjct: 14  HAEVKLIKSL-QLAKYRRQSNLFIAEGEKLIGEML--PAYRCQLLVGTAELVEPLLERCP 70

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V    P+ I+++ G ++    LAL   P +     A+      ++LD V DP N
Sbjct: 71  ASIAEAVTLPDPKQIERVSGLKSPRPLLALCEIPTIEAP-QALLQP--TLLLDDVQDPGN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G +LR+        ++ T+  +   S  + ++  GAL  +   R ++ T  L  +    
Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADIYSPKVLQATMGALARVQVYRYTDRTALLTMLKKTE 187

Query: 207 FQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKA 262
              IG   D   PL            L+LG EG G+ P+     +    +  P     ++
Sbjct: 188 IPVIGTFIDG-VPLRTLRLASEQPYILVLGNEGNGISPELSALVSQRITIPSPVDSHCES 246

Query: 263 LNVSNAAAVAL 273
           LNV+ A A+ +
Sbjct: 247 LNVAVAGAIVM 257


>gi|256845158|ref|ZP_05550616.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294785543|ref|ZP_06750831.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
 gi|256718717|gb|EEU32272.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294487257|gb|EFG34619.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_27]
          Length = 258

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 6/184 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +  +++   +   QG+ +        T D    S  L++LD V+DP N+G I+R  
Sbjct: 74  VVTRKIFEELSS-QKNSQGIIIL---YNKKTNDLKSPSNNLVILDDVSDPGNLGTIIRIC 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A +   II TK    + +  + ++  G++ ++    +   ++ +  +    +  I    
Sbjct: 130 DATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK-SEIINFLKENNYSIISTYL 188

Query: 215 D-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  P  +    +K  +I G EG G+             + +    ++LNV+ A  + L
Sbjct: 189 DKTAIPYNKIKLKEKNVIIFGNEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIIL 248

Query: 274 YITQ 277
           Y  +
Sbjct: 249 YKFR 252


>gi|189191132|ref|XP_001931905.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973511|gb|EDU41010.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 651

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 103/319 (32%), Gaps = 79/319 (24%)

Query: 38  QKSRHTSQPENL--------FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K +    PE+L        F+YG  +V AA+    RK ++L      +       +   
Sbjct: 321 DKPKSVRGPESLPYTTAASEFIYGTRSVLAAIKANRRKFYKLYIHARGMENSQAIKSTIR 380

Query: 90  PFPVKTVPPQT-------IDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---------- 132
              +  +  +        +DK       H GL LE +P     +  +  +          
Sbjct: 381 SLKLFHITTEVGDEYMRAMDK-ASNGRPHNGLILEASPPPVLPITQLTAASIEDGAFNLS 439

Query: 133 ---------------------------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                                       L++ +D V D  N+GAI RSA     D I+T 
Sbjct: 440 LDRQSAEDEAINGTQELYEYKSDGWRYPLILYIDGVVDEGNLGAIARSAYVLGVDAIVTP 499

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS------DSKKP 219
             ++   S +  K++SGA E +P  R+       Q     G++     +      D +  
Sbjct: 500 THHTAEWSPIAIKASSGAAEAMPLFRVKEPEQFFQSSSQVGWRIYASDAVPLSTQDGQHV 559

Query: 220 LEQE-------------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------II 260
           +                +      L++G+E  G++    + A     +   G       +
Sbjct: 560 VYSLSQRYSPLPADHSPLAEHPTILMMGSEHSGVKKHLAKMAHYKVGIP-HGRSVDEVGV 618

Query: 261 KALNVSNAAAVALYITQNH 279
            + NVS AA +  Y     
Sbjct: 619 DSFNVSVAAGILCYQMMQR 637


>gi|255693302|ref|ZP_05416977.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
 gi|260620877|gb|EEX43748.1| RNA methylase, SpoU family [Bacteroides finegoldii DSM 17565]
          Length = 175

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +     V    L++VLD +   HNIG++ R++ AF  + I      +      + K+A G
Sbjct: 14  AEEFKQVEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALG 73

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKG 239
           A   + +  ++N  DA+  + + G+    +  ++    L+  +  K  K A+++G E KG
Sbjct: 74  AEFTVDWKYVNNAVDAVDNLKNEGYIVYSVEQAEGSIMLDELELDKTRKYAIVMGNEVKG 133

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++ +  + +     +   G   +LNVS    + ++
Sbjct: 134 VQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|87302985|ref|ZP_01085789.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
 gi|87282481|gb|EAQ74440.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 5701]
          Length = 290

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 5/187 (2%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           + V    ++ +    A   G+ L    L  P   A      ++ LD + DP N+G ++R+
Sbjct: 96  QPVAEPVLEAVA-TTAHPDGVVLT---LPWPEPPACERVDFVLALDRLQDPGNLGTLMRT 151

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A+A   + +  ++  +      + ++++GA   +P  R+  L   L+   + G Q +   
Sbjct: 152 ALAAGVEELWHSEG-ADPFQPKVLRASAGAALALPCRRLEQLLPRLESARTGGVQVVASV 210

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                P  Q        L+LG EG GL P+    ++    +   G +++LNV+ AAA  L
Sbjct: 211 VAGGIPYWQLDWTLPTVLLLGNEGAGLAPELLAASSHQVTIPHSGAVESLNVAVAAAPLL 270

Query: 274 YITQNHF 280
                  
Sbjct: 271 LERWRQL 277


>gi|256370817|ref|YP_003108642.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009609|gb|ACU52969.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 242

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 8/179 (4%)

Query: 110 VHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
            HQG+      +    ++ +           LL++LD + D  N G+I+R++     D I
Sbjct: 60  NHQGVFAIIDHIQLLKIENIIPMIYNSGKIPLLIILDSITDVRNFGSIVRTSACTGVDAI 119

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           I   + S + ++   K++SG +  IP  +  N+   ++ + S+G Q I ++  +     +
Sbjct: 120 IIATKNSVTINSDSIKTSSGGIFKIPICKEKNIIKIIRYLKSFGIQVIAVTEKTDNICYK 179

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQNHF 280
               +  A ILG+E KG+  K      +   L  +   + +LNVS A    LY T    
Sbjct: 180 FNYKNPTAFILGSEQKGISKKYLSLCNNTVKLPLIKNSLTSLNVSVACGAILYETIRQR 238


>gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 248

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 18/251 (7%)

Query: 32  KMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +    K+R   +  N FL  G      AL   +  I   +  +        D      
Sbjct: 10  KQEFIKLKTRGGRRKSNYFLCEGKRCCDEALKYAANSIECCVVAQEKADLDFLDMKF--- 66

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                +  + + ++   E     L L   P       +++    ++VLD V +P N+G I
Sbjct: 67  ----VLSEKEMSELSLTENPQGILMLMKKPDKVECPSSLK--PFVLVLDGVAEPGNMGTI 120

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A+A   + +I T       +A   ++  GA   + +I + +L    Q      F   
Sbjct: 121 LRTALAVGLERVILTSGTVDPYNAKAVRAGMGAQFRLEFIYVESLESLSQDFPEAKFWL- 179

Query: 211 GLSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             S  +   L       +    L+ G EG G++     +      + MPG  ++LNV+ A
Sbjct: 180 -TSPRADISLYNKGFDLSGSF-LVFGEEGDGIKDF---SVGERVTIPMPGDTESLNVAQA 234

Query: 269 AAVALYITQNH 279
           A + L+     
Sbjct: 235 ATLFLFEGVRR 245


>gi|29348574|ref|NP_812077.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|298386955|ref|ZP_06996509.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
 gi|29340479|gb|AAO78271.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|298260105|gb|EFI02975.1| RNA methylase, SpoU family [Bacteroides sp. 1_1_14]
          Length = 175

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   + +  + +    L++VLD +   HNIG++ R++ AF  + I      +   
Sbjct: 4   LKITELNRISAEEFKQAEKLPLVVVLDDIRSLHNIGSVFRTSDAFRIECIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKI 229
              + K+A GA   + +  ++N  DA+  +   G+    +  ++    L+  +  K  K 
Sbjct: 64  HPEMHKTALGAEFTVDWKYVNNAVDAVDNLRKEGYIVYSIEQAEGSIMLDRLELDKTKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG++ +  + +     +   G   +LNVS    + ++
Sbjct: 124 AIVMGNEVKGVQQEVIDHSDGCIEIPQYGTKHSLNVSVTTGIVIW 168


>gi|218258662|ref|ZP_03474983.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225287|gb|EEC97937.1| hypothetical protein PRABACTJOHN_00638 [Parabacteroides johnsonii
           DSM 18315]
          Length = 179

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   T +A ++S    L++VLDHV   +N+G++ R++ AF  + I      +   
Sbjct: 7   LKITELNRLTPEAFKDSEKIPLVVVLDHVRSLNNVGSVFRTSDAFRVESIYLCGITACPP 66

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKI 229
            A + K+A GA E + +    +  DA+ K+   G+    +  ++    L++    KN K 
Sbjct: 67  HAEIHKTALGAEETVGWEYFEDTMDAVDKLKQQGYTVCAVEQAEGSTMLDKLLLDKNKKY 126

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           A+I+G E KG++    +       +   G   +LNVS    + ++      +
Sbjct: 127 AVIMGNEVKGVQQCVVDNCDMCIEIPQYGTKHSLNVSVTTGIIIWDFFKQLS 178


>gi|295660999|ref|XP_002791055.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
 gi|226280982|gb|EEH36548.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb01]
          Length = 623

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 133/372 (35%), Gaps = 112/372 (30%)

Query: 13  FSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPE---------------NLFLYGVHTV 57
           FS + +H  +  +   +  +  +F  K    +QP                + F+YG   V
Sbjct: 213 FSRRKTHRERYAQRVAEPGEQSAFELKRPAHTQPHISITAPKSIPYTTAASEFIYGASAV 272

Query: 58  SAALNNPSRKIFQLLA---------------TKNALARLDWDANLPHPFPVKTVP---PQ 99
            AAL    RK+++L                 T+  +        L     VK V    P+
Sbjct: 273 LAALRCGRRKLYKLYIYETPDKVSLRLGRNPTREPMFDTIIKFGLAAGVCVKQVAGNWPK 332

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAV------------------------------ 129
            +DK+ G    H G  LE + L    +D++                              
Sbjct: 333 LLDKMSG-GRPHNGCILEASQLPKLPVDSLLPVLSPSETHFNASVCQQSAEEAEVNGTSG 391

Query: 130 ---------------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                                      + LD + DP N+GAI+RSA  F  D +I + R 
Sbjct: 392 RIPRAGYRDENSPLAENLIMPTRYPFALFLDGIRDPGNVGAIIRSAYYFGVDAVIVSTRS 451

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---------------QTIGLS 213
           S   SAV  K+++GA E+IP +  +N T  ++  H+ G+               QT+   
Sbjct: 452 SAPISAVAIKASAGAAENIPILTTTNPTLFVKSSHTNGWKFFAAEAPAAANASQQTLEAP 511

Query: 214 SD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIK 261
           ++   S++ +  ++      L+LG+E +GL    ++ A     +              + 
Sbjct: 512 TEQVLSRREVSTKLNEAPCVLMLGSEEQGLPRSIRQQADGAVVIPGAITASNVEDRAGVD 571

Query: 262 ALNVSNAAAVAL 273
           +LNVS A+A+  
Sbjct: 572 SLNVSVASALLC 583


>gi|94499900|ref|ZP_01306436.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
 gi|94428101|gb|EAT13075.1| putative tRNA/rRNA methyltransferase [Oceanobacter sp. RED65]
          Length = 229

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ D V  PHN+ AI+RS  AF+ + +     Y           A G+ +++  
Sbjct: 16  RQPDLTLITDAVFKPHNLSAIIRSCDAFAVNELNVVWPYDD--YQTFRGRAMGSQQYVNV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +++ A+Q     G+Q +     D   P          A+++GAE  G+  K  +  
Sbjct: 74  KTHKDVSQAIQGFKQQGYQIVAAHFCDQAVPHYDIDYTKPTAIVMGAEKNGVSAKAMDLV 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS AAA+ L    +  
Sbjct: 134 DHSIIVPMEGMVQSLNVSVAAALILSEAMHQR 165


>gi|329956389|ref|ZP_08296986.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328524286|gb|EGF51356.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 178

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++VLD++   HNIG++ R++ AF  + I      +      + K+A GA
Sbjct: 18  EEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAVPPHPEMHKTALGA 77

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGL 240
              + +  + N  +A+  + + G+    +  ++    L +    +  K A+++G E KG+
Sbjct: 78  EFTVDWKYVDNAVEAVDNLRNGGYTVYSVEQAEGSIMLNELTLDRTGKYAIVMGNEVKGV 137

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +  + +     +   G   +LNVS  A + ++   N  
Sbjct: 138 QQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKL 177


>gi|294791506|ref|ZP_06756663.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
 gi|294457977|gb|EFG26331.1| putative 23S rRNA methyltransferase [Scardovia inopinata F0304]
          Length = 294

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 105/286 (36%), Gaps = 38/286 (13%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA-----LAR 80
            H D  +  +   +S+   +   + + G   V  A++  S  +  L     A     L +
Sbjct: 5   PHSDRVRRIADLSRSKTRKKTGRILVEGPQAVREAVHFASDFVTDLYYDAAAGEDPVLGK 64

Query: 81  LDWDANLP----HPFPVKTVPP-----QTIDKIVGKEAVHQGLA--LETAPLLSPTLDAV 129
           +  +A       HP   + +       Q I  +V  EAV  GLA    +   L+   D+V
Sbjct: 65  IISEAQKKILYCHPCSSQVMEAISKDCQGIGALVRTEAVTGGLAPDASSFAALASLADSV 124

Query: 130 RNS-----------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           ++             L +    + DP N G I+R A A  C  +I         +  + +
Sbjct: 125 KSPGPVETAGHPARPLFLACWQLRDPGNAGTIIRVADAAGCPALILVDDCVDVTNPKVVR 184

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----------K 228
           S +G+L H+P + + +  D   +    G       +     +E     D           
Sbjct: 185 STAGSLFHLPIVTL-STDDFFTEAARLGLPVCAADAYGTDQVEAIPLPDLMDSLKSSSQP 243

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + ++ G E +GL         S   + + G  ++LNV+ +A++  Y
Sbjct: 244 LCILFGNEARGLDDSLINRCQSAVRIPLYGRAESLNVAMSASIIAY 289


>gi|126642632|ref|YP_001085616.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 205

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 25/191 (13%)

Query: 110 VHQGLALETAPLLSPTLDAVRNS-------QL------------LMVLDHVNDPHNIGAI 150
           +HQG     + +L   L  + N+        L             ++L++V DP N+G +
Sbjct: 19  LHQGHVFIISEVLYKDLSTLGNTLPCLGIIDLPKTASTIDYSVDTLILENVQDPGNVGTL 78

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA A +   II T+  +   S  + ++  GA   +       LTD L K         
Sbjct: 79  LRSAAAANIKQIICTQGSASLWSPRVLRAGMGAHFSLSCFENFQLTDILPKF---DIPVF 135

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             SS     L  +  +     ILG EG+G      E A     +  PG  ++LNV+ A +
Sbjct: 136 VTSSHRSTSLYSKDLSKPCVWILGNEGQGASDYALEHA-QSVTIPQPGGQESLNVAIAGS 194

Query: 271 VALYI--TQNH 279
           +  +    Q  
Sbjct: 195 ICFFEMVRQRQ 205


>gi|94986333|ref|YP_605697.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
           DSM 11300]
 gi|94556614|gb|ABF46528.1| tRNA (guanosine-2'-O-)-methyltransferase [Deinococcus geothermalis
           DSM 11300]
          Length = 216

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK---SASGAL 184
           A R   L +++D VN PHN  AILR+  A        T    P +S VL     ++  A 
Sbjct: 14  ARRQPTLTVLMDEVNKPHNFSAILRTCDAVGV----LTAHAVPPKSGVLPTFDATSGSAH 69

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPK 243
           + +   R  +   A++++ + G Q +      +     +        ++LGAE  G+  +
Sbjct: 70  KWVAVQRQPDAVTAVRQLQAAGMQVLATHLSQRSLDYREPDYTRPTCVLLGAEKWGVSDE 129

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             E A +   + M G++++LNVS AAA  L+  Q   
Sbjct: 130 AAEIADANIVIPMFGMVQSLNVSVAAATILFEAQRQR 166


>gi|304392320|ref|ZP_07374261.1| rRNA methylase [Ahrensia sp. R2A130]
 gi|303295424|gb|EFL89783.1| rRNA methylase [Ahrensia sp. R2A130]
          Length = 285

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 21/271 (7%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +   K +++   K ++  +       G      AL+     I  LL  K+A         
Sbjct: 18  NPRVKSIRALAMK-KNRDREGLFIAEGEKLARDALD-GGWHIDTLLYAKSATDDERRREG 75

Query: 87  L--------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----L 134
           L             V     + +  I  ++          + L S T DA + +      
Sbjct: 76  LETLAVKVRARGGDVLLTNAKVLTAITKRDNSQ----AVVSVLKSQTTDAAKITPQGDTC 131

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VLD V DP N+G I+R+A A    G++     +        ++  G+L   P +R+S 
Sbjct: 132 WLVLDRVRDPGNLGTIIRTADALGVAGVVLVGETTDPFGLEAVRATMGSLFAKPLVRLSR 191

Query: 195 LTDAL--QKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSM 251
               +  +   + G   +G                  + L++G E +GL  +   +   +
Sbjct: 192 ADYLVLAESWKAGGGHIVGTHLAGAVDHRTIDYAAKPLLLLMGNEQQGLDDEMAASCDHL 251

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A + M G   +LN++ A  +  +  ++H  K
Sbjct: 252 ALIAMGGAADSLNLAVATGIVTFAARSHALK 282


>gi|21673707|ref|NP_661772.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
 gi|21646829|gb|AAM72114.1| tRNA methyltransferase SpoU [Chlorobium tepidum TLS]
          Length = 229

 Score =  155 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 6/171 (3%)

Query: 114 LALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           L    +P     +  +   R + L +V+D+VN PHN+ AI+RS  A     +      S 
Sbjct: 11  LIALVSPERFRKIRELLEKRQTDLTLVMDNVNKPHNLAAIIRSCDAVGIHQVHAISYRSS 70

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKI 229
            ++     +A+GA   +      +     +K+   G Q +                    
Sbjct: 71  IKTK--QHTAAGASRWLKVHLNESFVPVGEKLRQSGMQILVAHYCPEAVNFRSIDYTRPT 128

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A+++G E KG   +    A +  ++ M G++++LNVS AAA+ L+  Q   
Sbjct: 129 AIVMGEELKGPSQEALGLADNFIYIPMMGMVESLNVSVAAALILFEAQRQR 179


>gi|114706914|ref|ZP_01439813.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
 gi|114537464|gb|EAU40589.1| hypothetical protein FP2506_02644 [Fulvimarina pelagi HTCC2506]
          Length = 282

 Score =  155 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/243 (21%), Positives = 103/243 (42%), Gaps = 11/243 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALN-NPSRKIFQLLATKNALARL-DWDANLPHPFPVKTV 96
           + R  +        G   V   L  +   +   +L  +N L+ + D  ++LP   P+   
Sbjct: 31  RERDLTGRHGFIAEGT-VVLDQLALSERFRPSSVLVLRNRLSSIADRLSHLPADCPIYVS 89

Query: 97  PPQTIDKIVGKEAVHQGLAL-----ETAPLLSPTLD-AVRNSQLLMVLDHVNDPHNIGAI 150
               ID+I G   +H+G+       +    ++  LD A+     +++   + +  NIGA+
Sbjct: 90  ERAVIDQIAGF-PMHRGVLAHGIDTQPERSVTEVLDNAMAGYGPVLIAIGIANHDNIGAL 148

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
            R+A AF   G++              + + G +    + R  N  D +    + G++ I
Sbjct: 149 FRNARAFGVGGVLLDDTSCNPLYRKALRVSVGTVLTADWCRSGNADDLIAAAEAAGYRPI 208

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            L+   +  L+     +++AL++GAEG GL     +    +  + M   + +LNV+  AA
Sbjct: 209 ALTPKGEHSLDDLEPTERLALVVGAEGPGLPENILDRLHGL-RIAMESDVDSLNVATTAA 267

Query: 271 VAL 273
           + L
Sbjct: 268 IVL 270


>gi|318040410|ref|ZP_07972366.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CB0101]
          Length = 261

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 11/260 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +    ++++ +Q  +   +   L L G H +   L    +   QLLAT   + R   
Sbjct: 6   SRRNPLVGRLRALHQ-PKGRREQGLLLLEGTHQLQELLRLGLQP-EQLLATPAWIERHGA 63

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   P++ V  + ++ +   +    G+    A    P   A  +   ++ LD + D
Sbjct: 64  LLA-DQDLPLQPVGEEVMEAVATTDHPD-GVVATLARQALPV--ARGDGAFVLALDQLQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+A+A   D +      +      + ++++GA   +P +R+S+ ++ L  + 
Sbjct: 120 PGNLGTLLRTALAAGVDEVWLGGG-ADPLQPKVLRASAGAALALPLLRLSDRSELLPLLE 178

Query: 204 ---SWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
              + G Q          +P  Q        L+LG EG GL P+    AT    +     
Sbjct: 179 RAVAAGRQLAATLVQPGVQPYWQLDWTRPTVLLLGNEGAGLHPQLAALATHRITIPHSAA 238

Query: 260 IKALNVSNAAAVALYITQNH 279
           +++LNV+ AAA  L      
Sbjct: 239 VESLNVAVAAAPLLLERWRQ 258


>gi|194476556|ref|YP_002048735.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
 gi|171191563|gb|ACB42525.1| putative tRNA (guanosine-2'-O-) - methyltransferase [Paulinella
           chromatophora]
          Length = 229

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 11/159 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186
           R S L ++L+HV   HN+ AILRS  A         + ++ S    L     +A G+ + 
Sbjct: 18  RISDLTVILEHVEKSHNLSAILRSCDAVGI-----IEAHAVSLRERLRIFQNTALGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +     +++  A+ ++   GF+  G +                 + +LGAE  GL  +  
Sbjct: 73  VRLRNYNSIVPAITQLKQRGFKIYGTNLGIGSIDYRNCDFLGPSSFLLGAEKWGLSQEAA 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFAK 282
           E       + M G++++LNVS A A+ L+    Q   A+
Sbjct: 133 ELVDQSITIPMSGMVQSLNVSVATAILLFEVLRQRQVAE 171


>gi|303282009|ref|XP_003060296.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457767|gb|EEH55065.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 463

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 26/234 (11%)

Query: 68  IFQLLATKNALA---RLDWDANLPHPFPVKTVPPQTIDKIVG-KEAVHQGLALETAPLLS 123
           I+++   + + A        A       ++TV    ++ + G     H G+ L+ + L  
Sbjct: 216 IYRMFVQEGSDASGDAALLRAARDARVEIETVSKHDLNVLTGSPPRPHNGVVLDASALTP 275

Query: 124 PTLDAVRN-------------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
             +D +               + + + LD V DP N+GA+LRSA      G++   + S 
Sbjct: 276 TPIDQLPRWVHGEGSSTVKGPAPVWLALDEVVDPQNLGAVLRSAKFLGVAGVVVCAKNSA 335

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKND-K 228
             S V++K+++GALE +    +  +   L +    G+   G ++ +    +         
Sbjct: 336 PLSPVVSKASAGALESMDVRSVGVMHRFLMRCVEDGWDVYGTAAEEGAADVADVDARGRP 395

Query: 229 IALILGAEGKGLRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYI 275
             L++G EG GLR   +   TSM  +            + +LNVS A  V L+ 
Sbjct: 396 SVLVMGNEGAGLRTNVRRACTSMLRIAGGGGEGDDDDGVDSLNVSVATGVILHA 449


>gi|260910662|ref|ZP_05917321.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635172|gb|EEX53203.1| SpoU family RNA methylase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 175

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
               A     L++VLD+V   HN+G++LRS  AF  + +      +   SA + K+A GA
Sbjct: 7   DEFKAASKLPLIVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAEIHKTALGA 66

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGL 240
            + + +   +  TDA+ ++H+ G +   +   +   + Q +  +   + A++LG E KG+
Sbjct: 67  EDSVTWKYFAQTTDAIDELHAKGTKVFAVEQVAGSTMLQNLDTEVGTRYAVVLGNEVKGV 126

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +    +       +   G   +LNVS AA + ++       K
Sbjct: 127 QQTVVDLCDGCLEIPQFGTKHSLNVSVAAGIVVWEFAKKIGK 168


>gi|159902962|ref|YP_001550306.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888138|gb|ABX08352.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 229

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 9/155 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE---SAVLAKSASGALEH 186
           R S L ++++ V  PHN+ AI+R+  A         + ++ +    +     +A G+ + 
Sbjct: 18  RISDLTILVEQVEKPHNLSAIMRTCDAAGV-----LEAHAVARETKTRTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +P     N+  A   +   GF+  G +                 A +LGAE  GL     
Sbjct: 73  VPLKDHKNIEAAALFLKKQGFKLYGTNLSVDAIDYRYCDYTGPTAFVLGAEKWGLSEPAT 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  ++ M G++++LNVS AA+  L+      
Sbjct: 133 RLMDAAIYIPMRGMVQSLNVSVAASALLFEALRQR 167


>gi|270284211|ref|ZP_05965753.2| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
 gi|270277338|gb|EFA23192.1| putative 23S rRNA methyltransferase [Bifidobacterium gallicum DSM
           20093]
          Length = 305

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 96/283 (33%), Gaps = 47/283 (16%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +K++   + + R   +     + G   V   L      +  L     A+   + DA   +
Sbjct: 19  FKRIMELSNRKR-REKANRFIVEGPQAVRELLQWMPSVVLDLYV---AVDSTEPDAAFIN 74

Query: 90  PFP-------------VKTVPPQTIDKIVGKEAVHQGLAL---------------ETAPL 121
           P               V     + +  + G     QG+                 +   L
Sbjct: 75  PTIGQCAGLAMQAGAYVHKATVEVMHHVSGD---CQGIFAIADLNQCRELMTGNEQADVL 131

Query: 122 LSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               LD     + L+     V DP N G ++RSA A  C+ ++         +  + +S 
Sbjct: 132 DDEQLDRGTARAPLIAAFWQVRDPGNAGTVIRSADAAGCECVVLVGDCVDVFNPKVIRST 191

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE----------QEIKNDKIA 230
           +G+L H+P + +   T A Q  H  G   +       K             +        
Sbjct: 192 TGSLFHLPILTMDESTFA-QWCHERGMTLVAADVYGTKERSPRTLPVVLAQRTFAQQPTC 250

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++ G E +GL     E A  +  + + G  ++LN++ +A++ L
Sbjct: 251 VLFGNEARGLETGMLEQADDIVSIPIYGKAESLNLATSASIML 293


>gi|256420719|ref|YP_003121372.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035627|gb|ACU59171.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 248

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 6/236 (2%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q  ++  +       G   V   L      + ++ AT   +A      +      V  V 
Sbjct: 14  QHKKYRQKSSQFMAEGDKIVPELLQ-EGVPVKEVYATSAWIAAHRALLDRTKDVNVTEVD 72

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
              + ++      +Q +AL   P  +          + + L+ + DP N+G I+R A  F
Sbjct: 73  ENVLRQLSALTTPNQAIALLDIPGSAAIAPGSLKGTVSLALETIQDPGNLGTIIRIADWF 132

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               II T     + +    ++  G++  +  +  S+++  +      G  +   +   +
Sbjct: 133 GIRQIICTPDCVDAYNPKTIQATMGSIARVKILE-SDISTLI---KEAGVPSYAATLHGR 188

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              E     + I LI G E +GL       +T    +   G  ++LN   AA +  
Sbjct: 189 DITEFSKLEEGIILI-GNESRGLSEAVISASTHKITIPRLGGAESLNAGVAAGIIC 243


>gi|332670159|ref|YP_004453167.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332339197|gb|AEE45780.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 274

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 109/263 (41%), Gaps = 19/263 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LP 88
           K +++   +    S+     + G   V  A+   + ++  L  T +A AR        + 
Sbjct: 13  KAVRALAGRP-ARSRSGRFLVEGPQAVREAVREQAVRVHDLYVTDDAAARYREIVADAVA 71

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNI 147
               V+T   + +D +       QGL +    +     D V    +L+ VL HV DP N 
Sbjct: 72  RGVVVRTGSAEVLDAMSADA---QGLVVVADLVAVALEDVVAPGPRLVAVLAHVRDPGNA 128

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA++R+A A   DG++ T+      +  + +S +G+L H+P    + L  A+  + + G 
Sbjct: 129 GAVVRAADAAGADGVVLTRESVDVHNPKVVRSTAGSLFHLPVATGAELPAAVAALRARGV 188

Query: 208 QTIGLSSDSKKPLEQE------------IKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
             +      +  ++                    A + G E  GLR + +  A ++  + 
Sbjct: 189 TVLAADGTGEHDIDDLLDVAGAAPAGVPDLAAPTAWVFGNEAWGLRDEDRALADAVVRVP 248

Query: 256 MPGIIKALNVSNAAAVALYITQN 278
           + G  ++LN++ AA V LY +  
Sbjct: 249 IRGRAESLNLATAATVCLYASAR 271


>gi|330444231|ref|YP_004377217.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
 gi|328807341|gb|AEB41514.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
          Length = 266

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 105/268 (39%), Gaps = 19/268 (7%)

Query: 23  LRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD 82
           L +++   K+  +   K   + + E   + GV  +  AL+        LL T N     +
Sbjct: 4   LGKHNPKIKE--ALALKRTKSRKGEFFLVEGVREIRKALDAGY-PFQHLLCTANLSEEEE 60

Query: 83  WD--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS--PTLDAVRNS-QLLMV 137
                       +     +++ ++  KE     +A+     LS    L + RN     ++
Sbjct: 61  SLCQEAAKRSIAIFFFHEESLSELSYKENSGHVIAVVRKTFLSTQEFLASRRNPVPFYLI 120

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ V  P N+GA+LR+      DG+I         +  + +S+ G +  +P +  ++L +
Sbjct: 121 IEQVEKPGNVGALLRTGDGVGVDGVILCDPIVDLYNPNVIRSSLGTVFTLPVL-CASLPE 179

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL-----RPKTQETATSMA 252
            LQ +    ++    S  +KK   +E      A++ G+E  GL       + +E      
Sbjct: 180 VLQLIRKESWEVYVTSPRAKKLYFEETFLAPTAIVFGSEKDGLMQPWFHERFKE-----I 234

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            L M G   +LN+S + A   Y      
Sbjct: 235 TLPMRGKADSLNLSTSVAAIAYEVLRQR 262


>gi|317474663|ref|ZP_07933937.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909344|gb|EFV31024.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 176

 Score =  155 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L +VLD++   HNIG++ R++ AF  + I      +      + K+A GA
Sbjct: 16  EEFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGA 75

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGL 240
              + +  ++N  +A+  + + G+    +  ++    L +    K+ K A+++G E KG+
Sbjct: 76  EFTVDWKYVNNTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYAIVMGNEVKGV 135

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +  + +     +   G   +LNVS  A + ++   N  
Sbjct: 136 QQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKL 175


>gi|189500046|ref|YP_001959516.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
 gi|189495487|gb|ACE04035.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides
           BS1]
          Length = 180

 Score =  155 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 2/161 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E + L        +   + ++L ++   +N+G++ R+A A   D +I T   +      +
Sbjct: 12  EMSRLSVEEYSRKQKHPVTVLLHNIRSMYNVGSVFRTADAAGIDRLIITGYTATPPRKEI 71

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILG 234
            K+A GA E + +   ++  + L  +   G    GL  +++ +P     K+D  + LILG
Sbjct: 72  DKTALGAQESVDWEYYTHPEEILGVLKDSGVTICGLEITENSRPYTDIKKDDFPLCLILG 131

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            E  G+     +    +  +   G   +LNVS AA VALY 
Sbjct: 132 NEVDGIDDDVLQFCDHVFEIPQYGTKHSLNVSVAAGVALYE 172


>gi|255036484|ref|YP_003087105.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
 gi|254949240|gb|ACT93940.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
          Length = 253

 Score =  155 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 5/234 (2%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++        + G  +V   L++   +I  +L T     +        H   V+TV  Q
Sbjct: 16  KKYRQLHGAFMVEGAKSVLELLDSD-FEIEFVLVTPEFQQKYSSILTR-HNVSVETVTAQ 73

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            ++ +   +     LA   A        +    + +++LD V DP N+G I+R A  +  
Sbjct: 74  ELEGLGSFQTNDSSLA--VAKTKENAFLSPAAKEYILMLDDVRDPGNLGTIIRIADWYGI 131

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+ ++  +   +  +  +A G+   +     ++L    +++   G Q IG        
Sbjct: 132 TKIVCSRDTTDIYNPKVIAAAKGSFTRVNLYY-TDLIQYFEEIKDTGRQVIGAFLGGDSL 190

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            E E   D   +I+G E  G+  + ++  T+   +   G  ++LNV  A AV L
Sbjct: 191 YEFEYPADGGIIIMGNESNGISEQVEQFVTNKIMIPRFGAAESLNVGIATAVML 244


>gi|238022623|ref|ZP_04603049.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
 gi|237866063|gb|EEP67197.1| hypothetical protein GCWU000324_02532 [Kingella oralis ATCC 51147]
          Length = 178

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 9/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VLD V D  N+G +LRSA A     ++     + + S  + ++  GA   +      NL
Sbjct: 32  IVLDAVQDAGNVGTVLRSAAAAGIRHVVLGAGCADAYSPKVLRAGMGAHFALTLHERVNL 91

Query: 196 TDALQKMHSWGFQ----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            D L      G+        L+  +   L +       A I G EG G+ P     A + 
Sbjct: 92  RDWL-----AGYPHRTLATALTEHNNFSLYELDLRPPSAWIFGNEGSGVSPDILAAADAT 146

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G +++LN++ AA + L+      
Sbjct: 147 VKIPMQGAVESLNIAQAATICLFEQMRQR 175


>gi|257146507|emb|CAX30793.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Glycaspis brimblecombei]
 gi|257146511|emb|CAX30796.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Diaphorina citri]
          Length = 239

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L++V+ PHNI A++R+A A     I     +  + S  L+ +A+G+   +
Sbjct: 14  AMRQPDLTVCLENVHKPHNISAVIRTADAVGIPQIHA--IWCKNSSKSLSAAAAGSNHWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                +++ +A+    + G Q +     +      Q   N    +ILG E  G+  +   
Sbjct: 72  KVRTHASIENAISACKAAGIQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A    H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|268318179|ref|YP_003291898.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262335713|gb|ACY49510.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 259

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 90/226 (39%), Gaps = 13/226 (5%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
            A L    +++FQ  A +  L   +             V P  I   +      +     
Sbjct: 6   EARLQQELQRVFQAAAQQGHLTDPEALVARLQG-----VSPDVIVAWLQPYLTER----- 55

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +   LD  R   ++ V++ + +  N+ A++RSA A    G    K     +     
Sbjct: 56  RRQRIEQVLDG-RTYTVVPVVEGLANTGNVSAVMRSAEALGYQGFGIIKG-QVQKYKTSE 113

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++A GA + +         +A+  + + G++ +  + +  +P++        AL+ G E 
Sbjct: 114 RTAQGADKWLDVWTWPTAAEAVPALKAAGYRIVATALEEAEPIDTFDFTVPTALVFGNEV 173

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN-HFAK 282
           +G+  +    A +   + + G  ++ N+S AAA+ALY  Q    A+
Sbjct: 174 EGVSRELLAMADARCVIPIVGFTQSFNISVAAAIALYHAQRDRLAR 219


>gi|33601597|ref|NP_889157.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50]
 gi|33576033|emb|CAE33113.1| putative RNA methyltransferase [Bordetella bronchiseptica RB50]
          Length = 257

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 93/263 (35%), Gaps = 18/263 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD- 82
            R++   K +           +   + L GVH   A L +    +  L      +ARLD 
Sbjct: 6   SRDNPAVKALHKLAAGG--GRRDGRILLDGVHLCQAWLAHQGTPLQALF----DVARLDH 59

Query: 83  -WDANLPHPFPVKT---VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
                L    P +    +  + +  +   E+  QG+            + +  +   ++ 
Sbjct: 60  PEIRALAGQVPPQHCLALDSRLLQGLASVESG-QGVVFVARAPEPALPERIDEN--CVLF 116

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + DP N+G +LR+  A     ++     + + S  + +S  GA   +      +L   
Sbjct: 117 DRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAV 176

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-P 257
           L ++       +  +      L         A + G EG+G+       A    H+    
Sbjct: 177 LPRL---DVPLVATTLARSGSLYDTDLPACCAWVFGHEGQGVAEALLRAAALRVHIPHES 233

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
             +++LNV  AAA+ L+  +   
Sbjct: 234 AAVESLNVGAAAAICLFEQRRQR 256


>gi|257146495|emb|CAX30784.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Conomelus anceps]
 gi|257146515|emb|CAX30799.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Delphacidae sp.]
          Length = 239

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L++V+ PHNI A++R+A A     I     +  + S  L+ +A+G+   +
Sbjct: 14  AMRQPDLTVCLENVHKPHNISAVIRTADAVGIPQIHA--IWCKNSSKSLSAAAAGSNHWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                +++ +A+    + G Q +     +      Q   N    +ILG E  G+  +   
Sbjct: 72  KVRTHASIENAISTCKAAGMQILAAHLTNQAIDFRQIDYNQPTCIILGQERAGISKQALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A    H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|113954546|ref|YP_729963.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CC9311]
 gi|113881897|gb|ABI46855.1| RNA methyltransferase, TrmH family protein [Synechococcus sp.
           CC9311]
          Length = 290

 Score =  155 bits (393), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 110/285 (38%), Gaps = 27/285 (9%)

Query: 14  SLKDSHYAKL-RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN---PSRKIF 69
           SLKD     +  R +   ++++S + +S    +   + L G H +   L           
Sbjct: 2   SLKDQSDELITSRRNPLVRRLRSLSARS-GRDEHGVVLLEGTHQLQE-LQCCSWTDSVSL 59

Query: 70  QLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            ++AT   L    D    LP    V+ +  + +   +          L     L   ++A
Sbjct: 60  DVVATPAWLQTHADLIRALPGSVRVQRISAEALQAGLTTVQPDGVACLLPLACLPSVVEA 119

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 ++ LD + DP N+G +LR+A A     +      +   +  + +S++GA+  +P
Sbjct: 120 ---PDFVLALDRIQDPGNLGTLLRTARAADIQQVWCASG-ADPLAPKVVRSSAGAILSLP 175

Query: 189 YIR--------ISNLTDALQKMHSWGFQTIGL-SSDSK-----KPLEQEIKNDKIALILG 234
             R        +  L + L +    G Q +     D+      +P  +        L+LG
Sbjct: 176 VERFGPDPMEGVVQLAERLNQAREAGLQIVATLVPDAAANLSVQPYWELDWTLPTVLLLG 235

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
            EG GL P  Q   ++   L     +++LNV+ AAAV  L   + 
Sbjct: 236 NEGAGLDPLLQACCSAGVTLPHSSAVESLNVA-AAAVPLLLERRR 279


>gi|119357220|ref|YP_911864.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
 gi|119354569|gb|ABL65440.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeobacteroides DSM
           266]
          Length = 180

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 2/162 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           LE   L + ++  V    + ++LD++    N+GA+ R+A A   + II T   +      
Sbjct: 10  LEMNRLDAKSVFDVPRHPVTLMLDNIRSMWNVGAMFRTADAAGIEKIILTGYTAAPPRKE 69

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALIL 233
           + K+A GA E + +    +  +A+  + + G +   L  ++  +P     K D  + LI+
Sbjct: 70  IDKTALGAQETVRWEYCESALEAIATLKARGVKICALEIAEPSRPYTAMRKTDFPLCLIV 129

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           G E  G+  +       +  +   G   +LNV+ AA V+L+ 
Sbjct: 130 GNEVDGIGDELLRECDEVIEIPQYGAKHSLNVAVAAGVSLFE 171


>gi|159903887|ref|YP_001551231.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889063|gb|ABX09277.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 285

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 91/233 (39%), Gaps = 18/233 (7%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL N S     +  +K           LP       V    +   +       G+A   +
Sbjct: 41  ALKNGSIPEEIIATSKWLENHSRILEFLPKNVQFHLVTASVLQASL-TTVTPDGVASLLS 99

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
               P L    +   ++VLD + DP N+G + R+A+A   D +      +   S  + +S
Sbjct: 100 LSALPKLK--HSPDFILVLDRLQDPGNVGTLFRTALAADIDALWLALG-ADPLSQKVLRS 156

Query: 180 ASGALEHIPYIRISNLTDA-----LQKMH---SWGFQTIGLSSDSK------KPLEQEIK 225
           ++GA+  +P+ R+++  D      + K+      G+Q +      K       P  +   
Sbjct: 157 SAGAVLKLPFERLADSEDIAIDGLVDKLRGVSQEGYQVVATYVAGKPSDFEVIPYWELDW 216

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                L+LG EG GL P+ Q   T    L     +++LNV+ AAA  L   + 
Sbjct: 217 IKPTVLVLGNEGSGLSPRIQACCTHGVTLPHSEAVESLNVAVAAAPLLLERRR 269


>gi|296826196|ref|XP_002850935.1| RNA methyltransferase [Arthroderma otae CBS 113480]
 gi|238838489|gb|EEQ28151.1| RNA methyltransferase [Arthroderma otae CBS 113480]
          Length = 510

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 107/299 (35%), Gaps = 76/299 (25%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP---PQTID 102
           P + F+YG   V+AA+   S +       +    R            VK V      T+D
Sbjct: 188 PVSEFIYGTSAVNAAVRYRSGEPK----WEQPEVRSIAKYASLAGAQVKHVTGPWKNTLD 243

Query: 103 KIVGKEAVHQGLALETAPLLSPT------------------------------------- 125
           K+ GK   H G+ LE +PL  P                                      
Sbjct: 244 KMTGKR-PHNGMVLEASPLPKPPVLNFQTVVSMSNSHFLAQLAPQPDEQAAVNGTDGYIP 302

Query: 126 LDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
            +A R           ++LD + DP N+GAI RSA  F  D I  +   S   S V+ K+
Sbjct: 303 FEARRKGAKASRYPFTLLLDGILDPGNLGAIFRSAHWFGADAIAFSPLNSAPISPVVMKA 362

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK----------------PLEQE 223
           A+GA E +P + I ++T  +    + G++     +                     L  E
Sbjct: 363 AAGATETVPTLAIRDVTTFITASQANGWKFFAADAPEATLTNDYTRKIPVVKSLSSLSTE 422

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSNAAAVAL 273
           +      L+LG EG GL+ K +  A +   +              + +LNVS A+A+  
Sbjct: 423 LTKAPCVLMLGGEGSGLQQKIKNRADAFVTIPGAYSDNICDDIAGVSSLNVSVASALLC 481


>gi|229495405|ref|ZP_04389140.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
           35406]
 gi|229317848|gb|EEN83746.1| RNA methyltransferase, TrmH family [Porphyromonas endodontalis ATCC
           35406]
          Length = 261

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 103/256 (40%), Gaps = 15/256 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           KK+    Q+++           G   +   L     ++  L+ T + L  ++    + H 
Sbjct: 14  KKLIVALQQTKVRRAEGLFVAEGPKLIGELLATFPCRL--LVTTASFLPLVEGLGQIQH- 70

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  +P +     +      + +         P+   +    LL  LD+V DP N+G+I
Sbjct: 71  --VVLLPEEYDFSSLSTLRTPRPMIALLELPTPPSASTITAPSLL--LDNVQDPGNVGSI 126

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR+A  F C  + TT+  +   S  + ++  GAL  +    I+++   L + H  G   +
Sbjct: 127 LRTADWFGCRSVFTTEGTADPFSPKVVQATMGALARVKVTPITDVH-TLGQAHRDGVAIL 185

Query: 211 GLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKAL 263
           G   + +  L      + +    LI+G EG+G+ P   +  T    +         +++L
Sbjct: 186 GTFLEGEDILAHHSTPLFSSPYLLIMGNEGQGISPTVAQYVTQRLTIPSSSPDGKQVESL 245

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A A+ L     H
Sbjct: 246 NVAAATAIVLACLHRH 261


>gi|212633214|ref|YP_002309739.1| tRNA guanosine-2'-O-methyltransferase [Shewanella piezotolerans
           WP3]
 gi|212554698|gb|ACJ27152.1| tRNA (guanosine-2'-O-)-methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 217

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIP 188
           R   L + LD V+  +NI A++R+A A     I       P  E  V   +ASG+ + + 
Sbjct: 5   RQPDLTLCLDKVHKTNNIAAVIRTADAVGIHEI---HAVWPEIEMRVSGNTASGSQQWVK 61

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               + ++DA+ +      Q +  + S++     +       A+ILG E  G+ P+   +
Sbjct: 62  SKAHNKMSDAVAEFRRQDMQILATNFSETAVDFREIDYTRPTAIILGNERDGVSPEGIAS 121

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A A+ +Y  Q   
Sbjct: 122 ADQHVIIPMIGMVQSLNVSVAGALIMYEAQRQR 154


>gi|291294599|ref|YP_003505997.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
 gi|290469558|gb|ADD26977.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus ruber DSM 1279]
          Length = 210

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 12/165 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC--DGIITTKRYSPSE---------SAVLAK 178
           R   L ++++ V+ PHN  AILRS  A        I  K   P+               +
Sbjct: 16  RQPDLTVLMERVHKPHNFSAILRSCDAVGVLEAHAIPAKHGIPNLEEAEDLSLKGKTFNE 75

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237
           ++  A + +     ++   A   + + GFQ +    S+      Q        ++LG E 
Sbjct: 76  TSGSAAKWVGLQLHADTASAFAHLKARGFQVLAAHFSERAVDYRQADYTRPTCILLGTEK 135

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            G+ P+  E A +   + M G++++LNVS AAAV L+  Q    +
Sbjct: 136 WGVSPEAAELADAHILIPMVGMVQSLNVSVAAAVILFEAQRQRLQ 180


>gi|254303889|ref|ZP_04971247.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324081|gb|EDK89331.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 256

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +  +++  +E   QG+ +        T D    S  L++LD V+DP N+G I+R  
Sbjct: 72  VVIRKVFEELSSQE-NSQGIIIL---YNKKTNDLKSLSNNLIILDDVSDPGNLGTIIRIC 127

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A +   II TK    + +  + ++  G++ ++    +   ++ +  +    +  I    
Sbjct: 128 DATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK-SEIINFLKENNYSIISTYL 186

Query: 215 D-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  P  +    +K A+I G EG G+             + +    ++LNV+ A  + L
Sbjct: 187 DKTAIPYNKIKLKEKNAVIFGNEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIIL 246

Query: 274 YITQ 277
           Y  +
Sbjct: 247 YKFR 250


>gi|33860979|ref|NP_892540.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639711|emb|CAE18881.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 223

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC--DGIITTKRYSPSESAVLAKSASGALEH 186
            R   L ++++ VN PHN+ AILR+  A        I+ K            +A G+ + 
Sbjct: 17  CRMRNLTVLVEAVNKPHNLSAILRTCDAAGVFEANFISEKDKV----KTFNSTAQGSQKW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +          A+ ++   GF+  G + + +         ++    +LGAE  GL  +  
Sbjct: 73  VKLNNHETTISAVSELKKKGFKLYGTTLNERSTDYRNFDYSENTCFVLGAEKWGLSDQLI 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M G++++LNVS A ++ L+      
Sbjct: 133 SKVDESIFIPMSGMVQSLNVSVATSILLFEAIRQR 167


>gi|323700776|ref|ZP_08112688.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. ND132]
 gi|323460708|gb|EGB16573.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio desulfuricans
           ND132]
          Length = 196

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 4/166 (2%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E        + A R   L +V+D++ DPHN+ A+LRS  AF   G+     Y+ S+   L
Sbjct: 7   EARKRRIDAVLARRQKDLTLVMDNIWDPHNVSAVLRSCDAFGVAGVHLY--YTDSQWPDL 64

Query: 177 A-KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
           A KS+  A + +      +  + + ++   G + +    SDS +P+         A+IL 
Sbjct: 65  ALKSSGSATKWVERTEHVDAAEMVAELKGRGMRVLRTGFSDSARPVMDFDFTKPTAIILS 124

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E +G  P          ++ M G++++ NVS AAA+ LY      
Sbjct: 125 NEHRGTSPDLAALVPDEIYIPMQGMVQSFNVSVAAAIILYQAFTQR 170


>gi|319793968|ref|YP_004155608.1| tRNA/rRNA methyltransferase (spou) [Variovorax paradoxus EPS]
 gi|315596431|gb|ADU37497.1| tRNA/rRNA methyltransferase (SpoU) [Variovorax paradoxus EPS]
          Length = 261

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 14/255 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK-NALARLD 82
            R++   K ++   Q      +   ++L G H   AAL    +    + A      A  +
Sbjct: 12  SRDNPLLKDLRKLAQDPGAYRKLGRIWLEGDHLCRAALARGVKPAIAVFAESFWPTAPAE 71

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           W A+         V    +  + G E+    G  L+         DA       +VLD +
Sbjct: 72  WGASAIKTV---VVADDLLRGVSGLESPAPMGFVLDQPVRPELIPDAPS-----VVLDRL 123

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N G+ILRSA AF    +I  K  +   +  + ++  GA   +  I      DAL  
Sbjct: 124 QDAGNAGSILRSAAAFGFTQVIALKGTAALWAPKVLRAGMGAHFGLRLIEGVE-ADALDA 182

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +       +  SS   + L Q       A ++G EG+G+    +  AT    +  PG  +
Sbjct: 183 LK---IPLVATSSHRGEWLHQARLPHPCAWLMGHEGQGVSAALEARATHHIRIAQPGGEE 239

Query: 262 ALNVSNAAAVALYIT 276
           +LNV+ AAA+ L+ +
Sbjct: 240 SLNVAAAAAICLHAS 254


>gi|87303170|ref|ZP_01085968.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 5701]
 gi|87282337|gb|EAQ74297.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus
           sp. WH 5701]
          Length = 229

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 7/154 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC--DGIITTKRYSPSESAVLAKSASGALEHI 187
           R + L +VL+ V+ PHN+ AILRS  A       +++ K            +A G+ + +
Sbjct: 18  RMADLTVVLEAVDKPHNLSAILRSCDAVGVLEAHVVSLKGR----PRTFNSTAQGSQKWV 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P      + + L ++   GF+  G    +      Q       A +LGAE  GL      
Sbjct: 74  PLRPHERVEEVLGQLKQQGFRLYGTQLGTDAVDYRQCDFTGPTAFLLGAEKWGLSEAAAA 133

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +   G++++LNVS AAAV L+      
Sbjct: 134 MVDQALFIPTGGMVQSLNVSVAAAVLLFEALRQR 167


>gi|312891737|ref|ZP_07751246.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
 gi|311295820|gb|EFQ72980.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
          Length = 224

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 9/227 (3%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
            G+ +++  +N+   KI  +  T + + +L    NL         P   + K        
Sbjct: 3   EGIKSITEFINSDY-KIETIYHTPSFVPKL---LNLSQKINFIECPATDLAKFSSLTTPQ 58

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           + +AL   P        +      +VLD + DP N+G I+R+A  F    II ++    +
Sbjct: 59  EVIALIKIPTWPVLETKILQQSFSIVLDGIQDPGNLGTIIRTADWFGIQNIICSEDTVDA 118

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            +A + ++  G+L  I    + NL   +           G   D +   +    +  + +
Sbjct: 119 YNAKVVQATMGSLARIHVHYV-NLAQLITNTK---LPVFGALLDGENIYQTNFGSQGL-I 173

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +LG EG G+RP+ Q        + + G  ++LNV+ A AV       
Sbjct: 174 VLGNEGNGIRPEIQALIQKPVTIPLLGKAESLNVAIANAVFCSEISR 220


>gi|119773403|ref|YP_926143.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
 gi|119765903|gb|ABL98473.1| tRNA guanosine-2'-O-methyltransferase [Shewanella amazonensis SB2B]
          Length = 241

 Score =  155 bits (392), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 5/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIP 188
           R   L ++LD V+  +NI A+LRSA A     +       P S   V   +ASG+ + + 
Sbjct: 16  RQPDLTVLLDQVHKTNNIAAVLRSADAVGVHQL---HAVWPESAMRVSGNTASGSQQWVK 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R   +TDA+  + + G Q +  + S + K   +       A++LG E  G+  +    
Sbjct: 73  TLRHQTVTDAITALKADGMQVVVTNFSPNAKDFREIDYTKPTAIVLGHEKNGVSDEAVRL 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A +   + M G++++LNVS A A+ L+  +   
Sbjct: 133 ADAEVIIPMVGMVQSLNVSVAGALVLFEAERQR 165


>gi|194334189|ref|YP_002016049.1| tRNA/rRNA methyltransferase SpoU [Prosthecochloris aestuarii DSM
           271]
 gi|194312007|gb|ACF46402.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris aestuarii DSM
           271]
          Length = 181

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 2/161 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
              +A     + ++L ++   +N+G+I R+A A   + +I T   +      + K+A GA
Sbjct: 18  EEYNAAEKHPVTIILHNIRSMYNVGSIFRTADAAGIEKVIITGYTATPPRKEIDKTALGA 77

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            E + +   ++  + +  M   G    GL  +++S+   + +  +  + LILG E +G+ 
Sbjct: 78  QETMAWEYFAHPLEVIPAMKEKGIAICGLEITTNSRAYTDVDRSDFPLCLILGNEVQGID 137

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               E    +  +   G   +LNVS AA VAL+     F +
Sbjct: 138 DDILEQCDHILEIPQFGTKHSLNVSVAAGVALFEMVRTFRQ 178


>gi|167764000|ref|ZP_02436127.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
 gi|167698116|gb|EDS14695.1| hypothetical protein BACSTE_02383 [Bacteroides stercoris ATCC
           43183]
          Length = 176

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 3/160 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++VLD++   HNIG++ R++ AF  + I      +    A + K+A GA
Sbjct: 16  EEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHAEMHKTALGA 75

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGL 240
              + +  ++N  +A+  + + G+    +  ++    L +    KN K A+++G E KG+
Sbjct: 76  EFTVDWKYVNNTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKNRKYAIVMGNEVKGV 135

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +  + +     +   G   +LNVS  A + ++   N  
Sbjct: 136 QQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKL 175


>gi|302804009|ref|XP_002983757.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii]
 gi|300148594|gb|EFJ15253.1| hypothetical protein SELMODRAFT_119049 [Selaginella moellendorffii]
          Length = 264

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 1/162 (0%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +           + A R   +  V++ + D  NI A+ R+A AF    +           
Sbjct: 52  MFAADRKQKFDQIIANRTFSICPVVEGLFDIGNICAVFRTAEAFGLQSVHVIANSDQKRY 111

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALI 232
                 + GA + +      N  + +Q + S G++       +   P+ +       A+I
Sbjct: 112 KEARNISMGAEKWLDVEVWENTNECVQVLRSRGYRIAVTDMGADTVPIHELDWTIPTAVI 171

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G E  G   +    A    H+ M G++++ NVS AA + +Y
Sbjct: 172 FGNEHNGTSEEALALADVKCHIPMVGMVESFNVSVAAGILMY 213


>gi|296328847|ref|ZP_06871358.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153968|gb|EFG94775.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 256

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +  +++  +E   QG+ +        T D    S  L++LD V+DP N+G I+R  
Sbjct: 72  VVTRKIFEELSSQE-NSQGIIIL---YNKKTNDLKFLSNNLVILDDVSDPGNLGTIIRIC 127

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A +   II TK    + +  + ++  G++ ++    +   ++ +  +    +  I    
Sbjct: 128 DATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK-SEIINFLKENNYSIISTYL 186

Query: 215 DSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D    L  +I   +K A+I G EG G+             + +    ++LNV+ A  + L
Sbjct: 187 DKTAILYNKIELKEKNAVIFGNEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIIL 246

Query: 274 YITQ 277
           Y  +
Sbjct: 247 YKFR 250


>gi|19704210|ref|NP_603772.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714434|gb|AAL95071.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 261

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +  +++  +E   QG+ +        T D    S  L++LD V+DP N+G I+R  
Sbjct: 77  VVTRKIFEELSSQE-NSQGIIIL---YNKKTNDLKFLSNNLVILDDVSDPGNLGTIIRIC 132

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A +   II TK    + +  + ++  G++ ++    +   ++ +  +    +  I    
Sbjct: 133 DATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK-SEIINFLKENNYSIISTYL 191

Query: 215 DSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D    L  +I   +K A+I G EG G+             + +    ++LNV+ A  + L
Sbjct: 192 DKTAILYNKIELKEKNAVIFGNEGNGISDDFINITDYKTIIPILSNTESLNVAVATGIIL 251

Query: 274 YITQ 277
           Y  +
Sbjct: 252 YKFR 255


>gi|289643246|ref|ZP_06475372.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
 gi|289506951|gb|EFD27924.1| tRNA/rRNA methyltransferase (SpoU) [Frankia symbiont of Datisca
           glomerata]
          Length = 265

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 91/218 (41%), Gaps = 7/218 (3%)

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
            ++    +A  R           PV+ V  + +  +  +    QG+    A      +  
Sbjct: 37  REIFVGSSAAGRYGELVGTA-GIPVRVVSDEAVASL-SETVTPQGVVA-LAEQPRHRIAD 93

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   +L+ +     DP N G I+RSA A   D ++              ++++G++ H+P
Sbjct: 94  LDTPRLVAICVDTQDPGNAGTIVRSADAAGADAVVFAGASVDPFGGKAVRASAGSIFHLP 153

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE----IKNDKIALILGAEGKGLRPKT 244
            +    + DA++++   G + +  +  + + ++        +     + G E +GL   T
Sbjct: 154 VVTDIGVADAVRQIREHGCRIVATTPSAPRDIDTAQDAGELDTPTGWLFGNEARGLPRAT 213

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +A ++  + + G  ++LN++ A A+ LY +    A+
Sbjct: 214 VVSADAVLRVPVYGQAESLNLAVATAICLYASARAQAR 251


>gi|257146499|emb|CAX30787.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Mocydia crocea]
          Length = 239

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L++V+ PHNI A++R+A A     I     +  + S  L+ +A+G+   +
Sbjct: 14  AMRQPDLTVCLENVHKPHNISAVIRTADAVGIPQIHA--IWCKNSSKSLSAAAAGSNHWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                + + + +    + G Q +     +      Q        +ILG E  G+  +   
Sbjct: 72  KVKTHATIENTISTCKAAGMQILAAHLTNQAIDFRQIDYTQPTCIILGQERAGISKQALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A    H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|123969030|ref|YP_001009888.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
 gi|123199140|gb|ABM70781.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           AS9601]
          Length = 236

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 18/223 (8%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +      ++L T+  L +    +       +  V  + +   +       G+A     
Sbjct: 2   LKSGKNP-SKILVTEKWLRKNQNLSKKFDESLINIVSEEVLASAIST-INPDGIAALVEI 59

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P     R    ++VLD + DP N+G + R+A+A   + I      +      + +++
Sbjct: 60  SAIPNYQFNRKDDFVLVLDRIQDPGNMGNLFRTALAAGVNAIFLAGG-AHPLGQKVLRAS 118

Query: 181 SGALEHIPYIRISNLTDALQKMHSW--------GFQTIGLSSDSK------KPLEQEIKN 226
           SGA+ H+P++R   + + +              GF+    SS ++      KP  +   +
Sbjct: 119 SGAVFHLPFLRFDGIEEEILNSLLNSLSELSNVGFKIFSTSSHNESTKKPSKPYWEVDWS 178

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NA 268
            + ALILG EGKG+  K QE       +    I+++LNV+  A
Sbjct: 179 RRTALILGNEGKGIHKKIQEAFNETITIPHSEIVESLNVACVA 221


>gi|189459414|ref|ZP_03008199.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
 gi|189433871|gb|EDV02856.1| hypothetical protein BACCOP_00037 [Bacteroides coprocola DSM 17136]
          Length = 257

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 90/256 (35%), Gaps = 14/256 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++S   K ++  +       G   V+  +N+       L+ATK  L           
Sbjct: 7   IKYIRSLELK-KNRKEEHAFLAEGNKLVNDLINH--FSCQLLVATKEWLQSHPHLQAAE- 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +  V  + + +        Q +              V    L + LD V DP N+G 
Sbjct: 63  ---IIEVTHEELSR-ASLLKTPQEVLAVFEQPHYEFDANVTEQSLCLALDDVQDPGNLGT 118

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F  + I  +   +   +    ++  GA+  +      NL D L+         
Sbjct: 119 IIRIADWFGIEHIFCSSGTADVYNPKTIQATMGAIARVKLHYC-NLPDFLKSASQKNTPI 177

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNV 265
            G   D +    QE+  + I +I+G EG G+  +  E  T    +          ++LNV
Sbjct: 178 FGTFLDGENIYTQELPANGI-IIMGNEGNGISKQIAEMVTHRILIPNYPQGCETSESLNV 236

Query: 266 SNAAAVALYITQNHFA 281
           + A A+     +   A
Sbjct: 237 AVATAIVCAEFRRRTA 252


>gi|256421016|ref|YP_003121669.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035924|gb|ACU59468.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 197

 Score =  154 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 2/164 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E    L   L+  R + L +VL++V DPHNI A+LR+  A     +      +       
Sbjct: 4   ERRERLLSVLNK-RQAGLTVVLENVFDPHNISAVLRTCDAVGIQDVYVLNTTTARRKRWG 62

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGA 235
            KS+S A + +   + S+    +  +     +       +  K L +      +AL+ G 
Sbjct: 63  HKSSSSAAKWLTVHQFSDTATCMAVVREKYDKIYTTHLAADAKSLYELDFTGSVALVFGN 122

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E +G+  + ++       +   GIIK+LN+S A AV++Y     
Sbjct: 123 EQEGVSEEIRKLCDGNFIIPQVGIIKSLNISVACAVSIYEAMRQ 166


>gi|302817646|ref|XP_002990498.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii]
 gi|300141666|gb|EFJ08375.1| hypothetical protein SELMODRAFT_131805 [Selaginella moellendorffii]
          Length = 264

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 1/162 (0%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +           + A R   +  V++ + D  NI A+ R+A AF    +           
Sbjct: 52  MFAADRKQKFDQIIANRTFSICPVVEGLFDIGNICAVFRTAEAFGLQSVHVIANSDQKRY 111

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALI 232
                 + GA + +      N  + +Q +   G++       +   P+ +       A+I
Sbjct: 112 KEARNISMGAEKWLDVEVWENTNECVQVLRKRGYRIAVTDMGADTVPIHELDWTIPTAVI 171

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G E  G   +    A    H+ M G++ + NVS AA + +Y
Sbjct: 172 FGNEHNGTSEEALALADVKCHIPMVGMVDSFNVSVAAGILMY 213


>gi|260063680|ref|YP_003196760.1| rRNA methylase [Robiginitalea biformata HTCC2501]
 gi|88783125|gb|EAR14298.1| rRNA methylase [Robiginitalea biformata HTCC2501]
          Length = 237

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 100/248 (40%), Gaps = 22/248 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K+++S +QK ++  +       G+  V   L++    +  L +T            LP  
Sbjct: 8   KRIRSLHQK-KYRIREGQFLAEGMKLVGELLDSGLEPV-GLYST--------APEELPGS 57

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            P+     +    +V    V     L   P+  P  + +      + LD V DP N+G +
Sbjct: 58  QPITEGELRKASALVRPSGV-----LGVFPIPDP--EPLTFEGWTLALDGVRDPGNLGTL 110

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F    ++ +       +  + ++  G++  +  +   +L + L    + G    
Sbjct: 111 IRLCDWFGIGELLCSPDTVDCYNPKVLQATMGSIARVRVVY-KDLAETLD---ASGLPVY 166

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G S + +    ++  +  I L++G+E  GL    ++  +    +   G  ++LNV+ AAA
Sbjct: 167 GASMEGEAIGGEQPLSPGI-LVMGSESHGLSGPVRDRLSQTWAIPSFGRAESLNVATAAA 225

Query: 271 VALYITQN 278
           + LY  + 
Sbjct: 226 ILLYEIRR 233


>gi|332884280|gb|EGK04548.1| hypothetical protein HMPREF9456_00875 [Dysgonomonas mossii DSM
           22836]
          Length = 175

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 3/160 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
               +   + L++VLD+V   +NIG++ R++ AF  + +      +   +  + K+A GA
Sbjct: 15  EEFKSEPKTPLIIVLDNVRSLNNIGSVFRTSDAFLVEAVYLCGITATPPNVEIHKTALGA 74

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGL 240
              + +   S+   A++++   G+    +       +  E       K A+ILG E KG+
Sbjct: 75  ENSVAWAYYSDTDQAVEELKKNGYTLCAVEQAQNSIMLDELQLDSTKKYAVILGNEVKGV 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +            +   G   +LNVS AA + ++      
Sbjct: 135 QQDVVSRCDCCVEIPQYGTKHSLNVSVAAGMVIWEFSKQL 174


>gi|85858093|ref|YP_460295.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
 gi|85721184|gb|ABC76127.1| 23S rRNA methyltransferase [Syntrophus aciditrophicus SB]
          Length = 272

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 106/247 (42%), Gaps = 7/247 (2%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-LDWDANLPHP 90
           ++ S   K +   +       G   V A L +    +  LL  +    R   +   LP  
Sbjct: 18  RLWSRLDKVKTREETGLFLAEGFKVVQALLES-RWDVQALLILEEKKDRWAAFCETLPVS 76

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIG 148
            P+  +  +    +    +    LA+   P      D +       L++L  +N+P N+G
Sbjct: 77  LPLYGLTRKEWKGLTQDVSPEGILAVGITPPRLQLADLMAKGARGPLLLLHEINNPGNLG 136

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++R+A+ F   G++ ++      +  + ++A G++ H+P++  ++L+  L ++    F 
Sbjct: 137 TLVRTALWFGFAGVVLSQGSVDPLNPKVIRAAMGSIFHVPFLFGADLSKVLPRVKE-NFH 195

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +G S  +          +K AL+LG+E  GL     +      H+   G+ ++L++  A
Sbjct: 196 VVGSSVRTGTLPHAC--GEKTALLLGSESHGLPETLLKLTDEQWHIPRRGVGESLSLPQA 253

Query: 269 AAVALYI 275
           AA+ +Y 
Sbjct: 254 AAILMYE 260


>gi|15242287|ref|NP_197043.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|7671508|emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana]
 gi|110737570|dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana]
 gi|332004772|gb|AED92155.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 350

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 8/185 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V     + ++ +    + H    +E        +   R+  + +V++ ++D  NI A  R
Sbjct: 121 VHLSSREVLEAV----SPH---MMEERTDRFRRVVENRSYSVCLVVEGLSDFGNISAAFR 173

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A     +      S          + GA + +         +  + + S G++    
Sbjct: 174 SADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLDIEFWDTPKECFKVLKSRGYRIATT 233

Query: 213 SSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                   +     +   A+++G EG+G+  +  E +     + M G++ + NVS AA +
Sbjct: 234 HLGMDTVSIYDMDWSCPTAIVVGNEGRGISDEALELSDLRCSIPMNGMVDSFNVSVAAGI 293

Query: 272 ALYIT 276
            ++  
Sbjct: 294 LMHHA 298


>gi|294787535|ref|ZP_06752788.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315226880|ref|ZP_07868668.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|294484891|gb|EFG32526.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315121012|gb|EFT84144.1| 23S ribosomal RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 330

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 89/305 (29%), Gaps = 73/305 (23%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA----------NLP 88
           ++++  +     + G   V  A+     ++  L   ++ L   +  A             
Sbjct: 24  RAKNRKKYGRFLVEGPQGVREAIGCKPGQVLDLYCDQDFLQFQESQADSVVGDLAYKADD 83

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAP---------------------------- 120
               V     + +D I       QG+A                                 
Sbjct: 84  RGIHVHVCSAEVMDAISKD---CQGIAAVVRKGAVDDQPPTGDGFRQSSSDDGDHGKARS 140

Query: 121 -------------LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
                              +  +N         + DP N G I+R A A   DG+I    
Sbjct: 141 KDENKGIGNGKGIGKDKGENRSKNRGFYAACWQLRDPGNAGTIIRLADAAGLDGVILVDD 200

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-------- 219
                +  + +S +G+L H+P IR+  + D        G   +   +             
Sbjct: 201 CVDETNPKVVRSTAGSLFHLPIIRMG-IDDFFAFAQEHGATVVAADAYGTDQVPVKELPA 259

Query: 220 -LEQEIKND---------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            L++  +              ++ G E +GL             + + G  ++LNV+ +A
Sbjct: 260 FLDEWRRTGQDQEKAGSAPTIVLFGNEARGLDDPLINRCQEAVRIPLYGKAESLNVAMSA 319

Query: 270 AVALY 274
           AV LY
Sbjct: 320 AVILY 324


>gi|260494497|ref|ZP_05814627.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
 gi|260197659|gb|EEW95176.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_33]
          Length = 258

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 78/184 (42%), Gaps = 6/184 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +  +++  +E   QG+ +          D    S  L++LD V+DP N+G I+R  
Sbjct: 74  VVTTKIFEELSSQE-NSQGVIIL---YNKKNNDLKSLSNNLVILDDVSDPGNLGTIIRIC 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A +   II TK    + +  + ++  G++ ++    +   ++ +  +    +  I    
Sbjct: 130 DATNFKDIILTKGTVDAYNEKVIRATMGSILNVNLYYLEK-SEIINFLKENNYSIISTYL 188

Query: 215 D-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  P  +    +K A++ G EG G+             + +    ++LNV+ A  + L
Sbjct: 189 DKTAIPYNKIELKEKNAIVFGNEGNGISSDFINITDYKTIIPILSNTESLNVAVATGIIL 248

Query: 274 YITQ 277
           Y  +
Sbjct: 249 YKFR 252


>gi|317406253|gb|EFV86497.1| RNA methyltransferase [Achromobacter xylosoxidans C54]
          Length = 262

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 95/259 (36%), Gaps = 12/259 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLD 82
            R++   K +      +     P  + L GVH   A L +       +    + A   + 
Sbjct: 6   SRDNPAVKALLKLAGTAGKRGAP--VLLDGVHLCQAWLQHHGAPDQAIFDVERLAQPDIA 63

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             A          +  + +  +   E+  QG+A    P       AV  +   ++ D + 
Sbjct: 64  ALAAAVPDARCLALDARLMQALASVESG-QGVAFVVTPPPLSLPAAVDEN--CVLFDRIQ 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A     +      + + S  + +S  GA   +      +L+  L  +
Sbjct: 121 DPGNVGTLLRTCAAAGIKRVFLATGTAAAWSPKVLRSGQGAHFALAIHEHVDLSALLPTL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGII 260
              G   +  + +  + L       + A + G EG+G+  +    A     +   M   +
Sbjct: 181 ---GVPLVATALEGAQDLYAGRLPARCAWVFGHEGQGVAAELLAAARLKLRIPHDMA-AV 236

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV  AAA+ L+  +  
Sbjct: 237 ESLNVGAAAAICLFEQRRQ 255


>gi|88809215|ref|ZP_01124724.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
 gi|88787157|gb|EAR18315.1| tRNA (guanosine-2'-O-)-methyltransferase [Synechococcus sp. WH
           7805]
          Length = 229

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 9/155 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---AVLAKSASGALEH 186
           R S L ++++HV  PHN+ AILRS  A         + ++ S S        +A G+   
Sbjct: 18  RMSDLTVLVEHVEKPHNLSAILRSCDAVGV-----LEAHAVSFSGRPRTFNSTAQGSQRW 72

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +     ++++ A+  +    F+  G +     +           A +LGAE  GL  +  
Sbjct: 73  VSLRDHADISTAVHHLKERSFRLYGTNLGVDARDYRDCDFTGPCAFVLGAEKWGLTEEAT 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   + M G++++LNVS A A  LY      
Sbjct: 133 ALMDQAIFIPMRGMVQSLNVSVATATLLYEALRQR 167


>gi|108804143|ref|YP_644080.1| tRNA/rRNA methyltransferase SpoU [Rubrobacter xylanophilus DSM
           9941]
 gi|108765386|gb|ABG04268.1| tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM
           9941]
          Length = 223

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 9/214 (4%)

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           R+  +L   +    RL  +A +P P  V T P Q   + V       G       L    
Sbjct: 16  REEERLFLAEG--ERLLAEATVP-PLRVFTEPEQI--RRVSTLKTPAGPVGVFPYLDVSP 70

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            + +   +++++L+ V DP N+G ++RSA AF   G+  ++  +   +    +S  G+L 
Sbjct: 71  EELLARGRIVVLLEGVQDPGNVGTVIRSAHAFGA-GVALSRGCADLYNPKTVRSTMGSLF 129

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P  R  +    L+     GF     +    +P    +    + + +G+EG GL P   
Sbjct: 130 RVPVARELDPLAFLELARGAGFGLAAATPGGGEP-PGSMPGGNLVVAVGSEGAGLSPGVV 188

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   +       +LN + AA++ LY     
Sbjct: 189 RACGVRVSIP--SRAPSLNAAVAASILLYEAYRR 220


>gi|190893165|ref|YP_001979707.1| RNA methylase [Rhizobium etli CIAT 652]
 gi|190698444|gb|ACE92529.1| probable RNA methylase protein [Rhizobium etli CIAT 652]
          Length = 274

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 11/245 (4%)

Query: 39  KSRHTSQPENLFLYGVHTVSAAL-----NNPSRKIFQLLATKNALARLDWDA-NLPHPFP 92
           + R  +  E  F+     V   L          +  ++L  +N +A +       P   P
Sbjct: 23  RERDLTGREKRFIAEGTVVLRMLAEAHAEGRGFRAEKILLLRNRVAGIQPILDRFPADVP 82

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLL---SPTLDAVRNSQLLMVLDHVNDPHNIGA 149
           V       +  IVG   +H+G+           +  +DA+    L++V   +++  N G+
Sbjct: 83  VYVAEADALAGIVGFH-LHRGVLALGRREERDGAALVDALPERALVLVGCGISNHDNAGS 141

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           + R+A AF  D ++  +           + + G++  +P+ R     D L  +   GF  
Sbjct: 142 MFRNAAAFRADAVLLDETSCDPLYRKALRVSVGSVLRVPHRRGGKALDLLLALAERGFAI 201

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             LS   K  +       ++AL++G EG+GL           A +     + +LN + A 
Sbjct: 202 WTLSPHGKTDIRAIPAAARMALVVGTEGEGLPEALLARF-HSARIPQSDELDSLNAATAT 260

Query: 270 AVALY 274
            +AL+
Sbjct: 261 GIALF 265


>gi|297181103|gb|ADI17301.1| rRNA methylases [uncultured actinobacterium HF0070_17F14]
 gi|297181194|gb|ADI17389.1| rRNA methylases [uncultured Verrucomicrobiales bacterium
           HF0070_30L02]
          Length = 254

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 101/241 (41%), Gaps = 9/241 (3%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT--KNALARLDWDANLPHPFPVKTVP 97
            R +S+  ++ + G  TV  AL+   +    ++    ++  + +  +  LP       V 
Sbjct: 20  GRRSSRSGDIVIEGPRTVGEALDAECQPSVVIIPEHAEDDASVVAVERRLPASVEFLLVR 79

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
               +++         LA+   P+ S          +++VL  + DP N+G ++R A   
Sbjct: 80  DHVFERLTPSTTPQPMLAIVARPVAS----LPAAPSVVLVLAGIGDPGNLGTLVR-AADA 134

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
                +     +        ++++G++  +P ++   L D +  +   G   +G      
Sbjct: 135 VAADAVVVVGGADPWGPKAVRASAGSMLRVPIVQYDQLDDTVDALREAGVTVVGTDVTGG 194

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +P +Q + +  +A+++G+E  GL         + AH+ MPG  ++LNV+ A  + LY   
Sbjct: 195 EPFDQGVLDRPVAIVMGSEPHGLDRGVD--LDAWAHIAMPGRTESLNVAMAGTLLLYEAS 252

Query: 278 N 278
            
Sbjct: 253 R 253


>gi|294463916|gb|ADE77479.1| unknown [Picea sitchensis]
          Length = 327

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + +V++ + D  NI A++R+A A     +      S          + G+ + +  
Sbjct: 128 RTYSICLVVEGLTDFGNISAVIRTADALGFQSVHVITNDSTKRYKKSRNVSMGSEKWLDI 187

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  N  +  + + S G++       +    +         A++LG E +G+  +  + +
Sbjct: 188 EQWDNTWECFEVLRSRGYRIAVTHVGNDTVSVHDMDWTLPTAIVLGNEHRGISGEALKFS 247

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 248 DIKCSIPMTGMVDSFNVSVAAGIFMHAA 275


>gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
           DSM 5159]
 gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
           DSM 5159]
          Length = 271

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 89/235 (37%), Gaps = 8/235 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKIV 105
             + G  T++ A+    R    L      L  L+             +  V  + + +I 
Sbjct: 31  FLVEGPKTIADAVQAGYRPSH-LFYVPTRLDPLEQKVVARAQAVGTRIIAVTERVLHEIA 89

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +    Q +         P           +++D + DP N+G +LRSA+      ++ T
Sbjct: 90  -ETMTPQAVVAVFPIPSIPFRLPTAEPLFALIVDRLQDPGNLGTLLRSALGAGVHAVLLT 148

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                  +  + ++A+GA  H+P   +  +  A+Q+    G + +     + +  ++   
Sbjct: 149 PGTVDPFNPKVVRAAAGAHFHLPIATLDPV--AIQR-EFPGLEIVVARPQALRAYDERDW 205

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A+++G+E  G+  +    A     + + G +++LN   A ++ L+      
Sbjct: 206 TRASAVVIGSEAHGISAELARLAADEVRIPLRGGVESLNAGVAGSIILFEAARQR 260


>gi|116072328|ref|ZP_01469595.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
 gi|116064850|gb|EAU70609.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. BL107]
          Length = 279

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 35/284 (12%)

Query: 12  IFSLKDSHYAKLR-RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           I S ++    +LR  + R  +  +            E L++ G             +  +
Sbjct: 6   ISSRRNPLVKRLRMLSSRPGRDAEGLLLLEGTHLLQELLWIGG-------------QPTE 52

Query: 71  LLATKNALAR-LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           L+AT+    R  D    L      + V  + +   +       G+A      L P  +  
Sbjct: 53  LIATEAWFDRHADLIQALDASVVWRRVTEEVLGAALST-VTPDGVACLCPITLLP--EPP 109

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +     +VLD + DP N+G++LRSA+A     +               ++++GAL  +P+
Sbjct: 110 KTCDFWLVLDRIQDPGNLGSLLRSALAADVQSVWMGSG-VDPLGGKALRASAGALLQLPH 168

Query: 190 IR--------ISNLTDALQKMHSWGFQTIGL-SSDSK-----KPLEQEIKNDKIALILGA 235
            R        I +L  AL+ + + G Q +     D+       P  +       AL+LG 
Sbjct: 169 RRFGPEQQQAIDDLDQALRLLMAQGIQVVATLVPDASGPLRPIPYWELDWTQPTALVLGT 228

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
           EG GL P+ Q   T    L     +++LNV+ AAAV  L   + 
Sbjct: 229 EGAGLHPRLQACCTHAVTLPHSSRVESLNVA-AAAVPLLLERRR 271


>gi|33862607|ref|NP_894167.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634523|emb|CAE20509.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9313]
          Length = 275

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 22/237 (9%)

Query: 58  SAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
              L    R   +++AT   L R  D    LP    +  V P  ++  +   +   G+A 
Sbjct: 37  QEVLRTTHRP-KEIVATNFWLERHGDLVQALPAETLIHQVTPSVLEASLTTVSPD-GVAS 94

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                L     AV  ++ ++ LD + DP N+G +LR+A+A   + +      +   S  +
Sbjct: 95  LVP--LDSLPQAVNQAKFVLALDRLQDPGNLGTLLRTALAAEVEAVWLASG-ADPLSPKV 151

Query: 177 AKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGL------SSDSKKPLEQ 222
            ++++GA+  +PY R        +  L + L+   S G Q +        ++ S  P  Q
Sbjct: 152 LRASAGAILQLPYQRFGSSGQEAVEQLAEQLEWAASHGLQVVATMVPGSSAAHSCLPYWQ 211

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
                   L+LG EG GL P+ Q   T    L     +++LNV+ A AV  L   + 
Sbjct: 212 LDWRKPTVLVLGNEGSGLHPRLQACCTDCVTLPHSAAVESLNVA-AVAVPLLLERRR 267


>gi|317478097|ref|ZP_07937272.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|316905695|gb|EFV27474.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 175

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   +++  + +    L++VLD++   HNIG++ R++ AF  + I      +   
Sbjct: 4   LKITELNRISVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKI 229
              + K+A GA   + +  + N  +A+  + S G+    +  ++    L++    K  K 
Sbjct: 64  HPEMHKTALGAEFTVDWKYVDNSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG++ +  + +     +   G   +LNVS  A + ++
Sbjct: 124 AVVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|313204822|ref|YP_004043479.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
           WB4]
 gi|312444138|gb|ADQ80494.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
           WB4]
          Length = 177

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 3/165 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L          + L++VLD+V   HN+G++ R+A AF  + +      S    A +
Sbjct: 8   EMHRLTVDEFKEKAKTPLIVVLDNVRSLHNVGSVFRTADAFLVEAVYLCGITSTPPQAEI 67

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALIL 233
            K+A GA   + +    +   AL+++ +  +    +   +   L  E+      K A++L
Sbjct: 68  HKTALGAENTVTWKYFEDTHQALEELKAQAYTVFAIEQAAGSTLLPELALNPAMKYAVVL 127

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G E KG++    +       +   G   +LNVS    + ++    
Sbjct: 128 GNEVKGVQQSVVDACDGCIEIPQFGTKHSLNVSVTGGIIIWEFFR 172


>gi|237744635|ref|ZP_04575116.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229431864|gb|EEO42076.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 258

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 78/184 (42%), Gaps = 6/184 (3%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +  +++  +E   QG+ +          D    S  L++LD V+DP N+G I+R  
Sbjct: 74  VVTTKIFEELSSQE-NSQGVIIL---YNKKNNDLKSLSNNLVILDDVSDPGNLGTIIRIC 129

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A +   II TKR   + +  + ++  G++ ++    +   +  +  +    +  I    
Sbjct: 130 DATNFKDIILTKRTVDAYNEKVIRATMGSILNVNLYYLEK-SKIINFLKENNYSIISTYL 188

Query: 215 D-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           D +  P  +    +K A++ G EG G+             + +    ++LNV+ A  + L
Sbjct: 189 DKTAIPYNKIELKEKNAIVFGNEGNGISSDFINITDYKTIIPILSNTESLNVAVATGIIL 248

Query: 274 YITQ 277
           Y  +
Sbjct: 249 YKFR 252


>gi|53713569|ref|YP_099561.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60681852|ref|YP_211996.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|253565559|ref|ZP_04843014.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265763891|ref|ZP_06092459.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52216434|dbj|BAD49027.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493286|emb|CAH08070.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis NCTC
           9343]
 gi|251945838|gb|EES86245.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256499|gb|EEZ27845.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163344|emb|CBW22894.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 253

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 16/246 (6%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +   + E +FL  G   V   L     K+  L+AT + L              V  V  +
Sbjct: 18  KKIRKEEKVFLAEGPKLVGDVLGYFPCKL--LIATSDWLEEHPAVQAAE----VIEVTSE 71

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    +   Q LAL   P     ++A+RNS L + LD + DP N+G I+R A  F  
Sbjct: 72  ELSRTSLLKTPQQVLALFEQPEYEIDMEAIRNS-LCLALDDIQDPGNLGTIIRLADWFGI 130

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + I  +       +    ++  G +  +     + L D +  +        G   D +  
Sbjct: 131 EHIFCSPNTVDVFNPKTIQATMGGIARVKVYYTA-LPDLMHSLG--NVPVYGTLLDGENM 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVALYI 275
            EQ +  + I +I+G EG G+ P+ ++      ++          ++LNV+ A A+    
Sbjct: 188 YEQPLSKNGI-IIMGNEGNGISPEIEKLVNRKLYIPNYPAERETSESLNVAIATAIVCAE 246

Query: 276 TQNHFA 281
            +   A
Sbjct: 247 FRRQAA 252


>gi|54025800|ref|YP_120042.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54017308|dbj|BAD58678.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 278

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 101/273 (36%), Gaps = 15/273 (5%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            ++   +   +  Q++        +     + GV  ++ AL      +  LL        
Sbjct: 3   RRVSTRNASVQVWQAYLTNRTKRHRDRRFLVQGVRPITQAL-AAGWPLETLLYRLGGPEL 61

Query: 81  LDWDANLPH--PFPVKTVPPQTIDKIVGK-EAVHQGLALETA--PLLSPTL--DAVRNSQ 133
             W   +      P+  + P+ +  +  K EA  + +A+  +  P L+     +   ++ 
Sbjct: 62  SGWARQILDTTDVPLVGLVPELMADLGEKTEAAPELVAVAVSRQPELAEFAPGEPGEDAP 121

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++V D  N P N+G ++RSA +F    ++ T   +        ++++G+L  +P  R+ 
Sbjct: 122 VVVVFDRPNSPGNLGTLIRSADSFGAAAVVVTGHGADQYDPRAVRASTGSLFAVPVFRVP 181

Query: 194 NLTDALQKMHSWGF------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                L+               +G        +      D   L++G E  G+    Q+ 
Sbjct: 182 GPAQVLE-FRDRQIARGIPTTVVGTDEHGTAAVFDHDFRDATILVIGNETSGMSAAWQDA 240

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +  + M G   +L   +A AVALY      
Sbjct: 241 CDELVAIPMGGTASSLGAPSAGAVALYEISRQR 273


>gi|225559060|gb|EEH07343.1| RNA methyltransferase [Ajellomyces capsulatus G186AR]
          Length = 462

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 136/366 (37%), Gaps = 100/366 (27%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           ++ +E++    +     L R+     ++     +S   +   + F+YG   V AAL    
Sbjct: 59  ERNAERLAERSEQTEYTLERSPHTQPQVSITAPRSIPYTTAASEFVYGSSAVLAALRCGR 118

Query: 66  RKIFQLLATKNALARLDWDAN----------------LPHPFPVKTVP---PQTIDKIVG 106
           RK+++L    NA  ++                     L     VK V    P+ ++K+ G
Sbjct: 119 RKLYKLYI-HNAPDKVSLRLGRHSPRDPMLDTIIKFGLAAGVSVKQVAGNWPKLLEKMSG 177

Query: 107 KEAVHQGLALETAPLLSPTLDAV------------------------------------- 129
               H G  LE + L    ++ +                                     
Sbjct: 178 -GRPHNGCILEASQLPKLPVNGLLAVESPLDNHFNVSVCQQSVEEADVNGTSGRIPRSTY 236

Query: 130 ---------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                                ++LD + D  N+GAI+RSA  F  D II + R S   SA
Sbjct: 237 RDGDSSSTGNDIKLAPRYPFALLLDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSAPISA 296

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGF---------------QTIGLSSD---S 216
           V  K+++GA E+IP +  +N T  L+  H  G+               Q++  S++   S
Sbjct: 297 VAVKASAGAAENIPILTTTNPTLFLKNTHMNGWKFFAAEAPAAAIASQQSLSTSAEQILS 356

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSN 267
           ++ ++ ++      L+LG+E +GL+   ++ A  +  +              + +LNVS 
Sbjct: 357 RRDVKSKLNESPCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSV 416

Query: 268 AAAVAL 273
           A+A+  
Sbjct: 417 ASALLC 422


>gi|224080139|ref|XP_002306029.1| predicted protein [Populus trichocarpa]
 gi|222848993|gb|EEE86540.1| predicted protein [Populus trichocarpa]
          Length = 269

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 60/148 (40%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  L +V++ + D  N+ A+ RSA A     +      S          + GA + +  
Sbjct: 69  RSYSLCLVVEGLTDFGNVSAVFRSADALGFQSVHVISCDSSKRYKENRHVSMGAEKWLDI 128

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  D  Q + S G++            +     +   A+++G E +G+  +  E +
Sbjct: 129 ELWDSAKDCFQVLKSRGYRIATTHVGIDAVSIYDMDWSCPTAIVVGNENRGISDEALELS 188

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 189 DLHCSIPMKGMVDSFNVSVAAGILMHHA 216


>gi|326625488|gb|EGE31833.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 206

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 5/145 (3%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISNLT 196
           ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   +       + 
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSWVQVKTHRTIG 57

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           DA+  +   G Q +    SD      +        +++G E  G+  +    A     + 
Sbjct: 58  DAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEALALADRDIIIP 117

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G++++LNVS A+A+ LY  Q   
Sbjct: 118 MIGMVQSLNVSVASALILYEAQRQR 142


>gi|319900584|ref|YP_004160312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319415615|gb|ADV42726.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 180

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 78/165 (47%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   +++  + +    L++VLD++   HNIG++ R++ AF  + I      +   
Sbjct: 8   LKITELNRISVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPP 67

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKI 229
              + K+A GA   + +  + N  +A+  +   G+    +  ++    L++    K  K 
Sbjct: 68  HPEMHKTALGAEFTVDWKYVENSVEAVDNLKKEGYVVYSVEQAEGSIMLDELALDKEKKY 127

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG+R +  + +     +   G   +LNVS  A + ++
Sbjct: 128 AVVMGNEVKGVRQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIW 172


>gi|166154614|ref|YP_001654732.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|166155489|ref|YP_001653744.1| 23S rRNA methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335881|ref|ZP_07224125.1| 23S rRNA methyltransferase [Chlamydia trachomatis L2tet1]
 gi|165930602|emb|CAP04099.1| 23S rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|165931477|emb|CAP07053.1| 23S rRNA methyltransferase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 269

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 101/264 (38%), Gaps = 15/264 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIF----QLLATKN-ALARL 81
           ++  +++S     R  ++    FL  G   +  AL +  R       +L+A K  AL R 
Sbjct: 6   KNNARVKSALALKRQRARNGTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALDRE 65

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMV 137
                +   +         ++K+  KE     +A+     LS      L     +   ++
Sbjct: 66  LTSLGIEKLY----CSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLI 121

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++    P NIGA+LR A     DG+I         +  + +S+ G +  +P    ++L +
Sbjct: 122 VEQAEKPGNIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPV-WQASLKE 180

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L  +H   +Q    +  ++     +       ++ G+E  GL P     +     L M 
Sbjct: 181 VLDLVHQQEWQVFTTTPSAQTFYFDQDFCQPTVVVFGSEKDGLSPDWLNGSFCNIALPML 240

Query: 258 GIIKALNVSNAAAVALYITQNHFA 281
           G   +LN+S++ A   Y      +
Sbjct: 241 GKADSLNLSSSVAAVAYEVVRQRS 264


>gi|254229032|ref|ZP_04922453.1| rRNA methylases [Vibrio sp. Ex25]
 gi|151938500|gb|EDN57337.1| rRNA methylases [Vibrio sp. Ex25]
          Length = 268

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 99/249 (39%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S K+  + AT+   A L+ +A+    
Sbjct: 32  KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLKVKHVFATE---AFLEQNASALSG 86

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P++   +   L++ LD V+DP N+G I
Sbjct: 87  FDCIEASLDDLTKASTLVSNN----AAIAVVEIPSVKVPQAKGLMIALDGVSDPGNLGTI 142

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 143 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEEANLPVY 198

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + E   + I L++G+E  G+R +  +  T+   +   G  ++LNV+ A  
Sbjct: 199 GAFLEGESVHKTEFAAEGI-LLMGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATG 257

Query: 271 VALYITQNH 279
           + L   + H
Sbjct: 258 IILDNMRRH 266


>gi|325916659|ref|ZP_08178919.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537102|gb|EGD08838.1| rRNA methylase [Xanthomonas vesicatoria ATCC 35937]
          Length = 235

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 8/222 (3%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            A      + + +L  T+  + +        +      + V    + K+      H+G+ 
Sbjct: 2   QAVFKARPQALRKLYLTEARIPQFKALLAWCVAQRIGYRVVEDADLSKLAAST-HHEGVV 60

Query: 116 LET-----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            E       PL        +   L + LD V +PHN GAILRS+  F   G++     + 
Sbjct: 61  AEVLRVSPQPLQEWLAALPQGPVLALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTL 120

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             S   A+ A G  E +P +++     A+ ++   GF       +  + +       ++ 
Sbjct: 121 GLSGAAARVAEGGAEAVPLVQLPEAPLAMTQLRQTGFAVAATLVEGGQDVFAAALPQRLV 180

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            ++GAE +G+  +          +   G++++LNV++A AV 
Sbjct: 181 YVMGAESEGMDRQFARDCDLQLSIRGSGLVESLNVASATAVF 222


>gi|53805210|ref|YP_113068.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53758971|gb|AAU93262.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str.
           Bath]
          Length = 282

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 17/250 (6%)

Query: 39  KSRHTSQPENLF--LYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPV 93
           +  H+   E     + G+  V+A   +   ++ +L      K A              P 
Sbjct: 27  RPAHSGAAEEKLGKIAGLSAVAAVFRHEPERVVRLYYDDSMKTAAGPFCAVLARLRR-PY 85

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNI 147
           + +PP+ + ++ G   +H G+     P   P L         +     ++LD V +PHN+
Sbjct: 86  RLLPPEEMARVAGT-VLHGGIVAAVRPREVPDLTLETAQRWAKAGAATVLLDGVGNPHNL 144

Query: 148 GAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           GAI R+   F    ++ +   +    S    + A G LE +   R++    AL+ +    
Sbjct: 145 GAIARTLAFFGLGHLVLSDHPAQAGLSDAAYRVAEGGLEFLDVRRLTGAAQALRSLR-PH 203

Query: 207 FQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           F  +G +  ++    + +  D   I L+LG E  GL P T     ++  +   G I++LN
Sbjct: 204 FHVVGTALHARGIPPEAVPRDRRPILLVLGNEENGLPPPTLAACETVVTIPGGGQIQSLN 263

Query: 265 VSNAAAVALY 274
           VS  AA+  Y
Sbjct: 264 VSATAAILTY 273


>gi|300774979|ref|ZP_07084842.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300506794|gb|EFK37929.1| 23S rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 255

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 94/255 (36%), Gaps = 10/255 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K +      +R   + +   + G      AL      + +    ++       D 
Sbjct: 7   QNDKIKNVTKLLTDNRFRKKSKVFVVEGQQENERALQYDFEPL-EFFICESIFKGAVPDG 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  +  V  +  +KI  + +    + +     +  +    +    +++++ V  P 
Sbjct: 66  K------IHYVSEKVYEKIAYRGSSEGIIGVYHTKEIPLSSFTPQKDSTVIIVEGVEKPG 119

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAILRS  AF  D +I     +   +  + +S+ G L  +   +  N  + L+ +   
Sbjct: 120 NLGAILRSCEAFGIDALIVADGKTDFYNPNVIRSSVGCLFGMEVYQAEN-KETLEFLQKN 178

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            F       D S + L +     + A++ G E  GL         +   + M G I +LN
Sbjct: 179 SFNIYTTLMDESAEDLYKRDFRQRSAVLFGTEHSGLSDFWIGKGKNTL-IPMAGSIDSLN 237

Query: 265 VSNAAAVALYITQNH 279
           +SNA A+  Y +   
Sbjct: 238 LSNAVAITCYESLRQ 252


>gi|213612386|ref|ZP_03370212.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 223

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 10/223 (4%)

Query: 64  PSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
               I +    ++   R          +      V    + K  G E  H G+       
Sbjct: 1   RPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELAKASGTE-HHGGVCFLIKKR 59

Query: 122 ----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +   +    +   ++ L+ V +PHN+G ++RS   F   G++     +  ES    
Sbjct: 60  NGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVVQDA-ALLESGAAI 118

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++A G  EH+  I   ++ D L      G+  +  SSD  + L      +K+ L+LG E 
Sbjct: 119 RTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREY 178

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
             L    +E       ++  G +++LNVS A  V L  +  QN
Sbjct: 179 DYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQN 221


>gi|325474590|gb|EGC77776.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 263

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 100/237 (42%), Gaps = 15/237 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           + G  +  A   +   KI +L  ++    +          +    + V    ++K+  + 
Sbjct: 19  VCGFESCLALAKHHPEKISRLFFSEKRAKQFGEVCKYLASNKRLYRIVSDDELEKL-SES 77

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+         P L+        +N + +++LD + + +N+GAI+RSA  F  + I
Sbjct: 78  VHHQGVTAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSAAFFGIENI 137

Query: 163 ITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           + TK     S +    + A G +E +   ++S+    L++        IG    +   + 
Sbjct: 138 VLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRGR-LTCIGTDLRAHHEIA 196

Query: 222 Q----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  K++   ++LG E +G+  + ++    +  +   G +++LNV+ AA +  +
Sbjct: 197 DLGRLIEKDEACVIVLGNEERGISEEAKKLCAHLIKIKGSGNVESLNVAQAATLFCH 253


>gi|189346688|ref|YP_001943217.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
 gi|189340835|gb|ACD90238.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium limicola DSM 245]
          Length = 179

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 2/165 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E   L +  L+A     + ++L ++    N+G++ R+A A   + II T   +      
Sbjct: 9   AEMKRLSAEELEASPKYPVYLMLHNIRSMWNVGSMFRTADAAGIERIILTGYTATPPRKE 68

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALIL 233
           + K+A GA + + +   ++  DA+ ++ + G +  GL       L   I  +   I L++
Sbjct: 69  IDKTALGAQDVVKWEYSADPLDAIDRLKAEGVRICGLEIAENSRLYTAIVKEEFPICLVV 128

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G E  G+  +      S+  +   G+  +LNV+ AA VAL+    
Sbjct: 129 GNEVDGIDDEVLSCCDSVLEIPQYGVKHSLNVAVAAGVALFELVR 173


>gi|42528213|ref|NP_973311.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41819483|gb|AAS13230.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 255

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 100/237 (42%), Gaps = 15/237 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           + G  +  A   +   KI +L  ++    +          +    + V    ++K+  + 
Sbjct: 11  VCGFESCLALAKHHPEKISRLFFSEKRAKQFGEVCKYLASNKRLYRIVSDDELEKL-SES 69

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+         P L+        +N + +++LD + + +N+GAI+RSA  F  + I
Sbjct: 70  VHHQGVTAMIFEPEIPVLEHEEINLWAQNKEHVLMLDEIGNANNLGAIIRSAAFFGIENI 129

Query: 163 ITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           + TK     S +    + A G +E +   ++S+    L++        IG    +   + 
Sbjct: 130 VLTKEDKQASITTSAYRVAQGGMEFVKIFKVSSTAWFLRQCRGR-LTCIGTDLRAHHEIA 188

Query: 222 Q----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  K++   ++LG E +G+  + ++    +  +   G +++LNV+ AA +  +
Sbjct: 189 DLGRLIEKDEACVIVLGNEERGISEEAKKLCVHLIKIKGSGNVESLNVAQAATLFCH 245


>gi|90407127|ref|ZP_01215315.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
 gi|90311703|gb|EAS39800.1| RNA methyltransferase, TrmH family protein [Psychromonas sp. CNPT3]
          Length = 247

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 92/243 (37%), Gaps = 9/243 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+    ++ +   +     + G   V+  L +    I Q+ AT   + + +   +     
Sbjct: 8   KLIKSLEQKKQRKKQGLFIVQGEKNVAELLRSD-FVIEQVFATSTYINKNNTLLSTHQLV 66

Query: 92  P-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           P    V    + K+     +     L  A   + TL  + + +L++VLD V DP N+G I
Sbjct: 67  PLCTEVSSDELKKM--GTLLSNNSVLVVAKCKTATLPTIASQELILVLDQVGDPGNLGTI 124

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +  +  ++ G+   I           ++ +        
Sbjct: 125 IRVADWYGVKNIVCSPDCADFYNPKVIAASMGSFARINVSHTP----LVEYLAIQEKPIF 180

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   +    L Q        +++G+E  G+  + +   +    +   G  ++LNV+ A  
Sbjct: 181 GAYLEGSN-LHQCALPKSAFIVMGSESHGISDELEHLISDKITIPNFGAAESLNVAMATG 239

Query: 271 VAL 273
           + L
Sbjct: 240 IIL 242


>gi|332296699|ref|YP_004438621.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332179802|gb|AEE15490.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 250

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 15/250 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQ 99
              Q + L + G   V A       +I +L  T    A+             P   V   
Sbjct: 2   KNKQYQELAVCGFAAVKALEKEHPERIRRLYFTAERAAQFGDLCRFLSQEKIPYNKVETL 61

Query: 100 TIDKIVGKEAVHQGLALETA-PLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
            ++K+ G    HQG+    A P + P     T D VR  +  ++LD V + +N+GAI+RS
Sbjct: 62  DLEKLCGS-VHHQGVVAMIAQPEIEPLTVEITADWVRGGESAVLLDRVGNANNLGAIVRS 120

Query: 154 AVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           A  F    I+     + S  +    + A G +E++    + +    LQ M     +  G 
Sbjct: 121 AAFFGIRNIVIPLDEAQSSVTTSSYRVAQGGMEYVRVYSVRSAVRLLQDMSGKMVR-FGT 179

Query: 213 SSDSKKPLEQE--IKNDKIALI-LGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNA 268
                 P+     ++  K AL+ LG E  G+ P  +E    +  +      +++LNV+ A
Sbjct: 180 DVRGAAPVSNMARLRAGKAALVVLGNEEAGISPLIRENCDHLIIIPAVNAAVESLNVAQA 239

Query: 269 AAVALYITQN 278
           A++ LY    
Sbjct: 240 ASIILYELAK 249


>gi|296100480|ref|YP_003610626.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054939|gb|ADF59677.1| tRNA guanosine-2'-O-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 206

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISNLT 196
           ++ V+ PHN+ AI+R+A A     +       P      +A +A+G+   +       + 
Sbjct: 1   MEQVHKPHNVSAIVRTADAVGVHEV---HAVWPGARMRTMASTAAGSNSWVSVKTHQTIG 57

Query: 197 DALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +A+  +   G Q +  +  +K     +        +++G E  G+  +  + A     + 
Sbjct: 58  EAVSHLKGRGMQILATNLSAKAVDFREIDYTRPTCILMGQEKTGITQEALDLADQDIIIP 117

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G++++LNVS A+A+ LY  Q   
Sbjct: 118 MIGMVQSLNVSVASALILYEAQRQR 142


>gi|290579924|ref|YP_003484316.1| putative rRNA methylase [Streptococcus mutans NN2025]
 gi|254996823|dbj|BAH87424.1| putative rRNA methylase [Streptococcus mutans NN2025]
          Length = 246

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 12/223 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H  + A  N +  I  +   +   +R+    N      V  V    +  +
Sbjct: 24  RQYSYLIEGWHLFAEAQANNA-DIINIFVLECYASRVSEFPN------VVLVSEDILKDL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A              LL  L+ V DP N+G I+R+A A + D +  
Sbjct: 77  SAS-KTPQGIVAEIAFPKQVIPQQFFGKYLL--LEDVQDPGNVGTIIRTADAAAFDAVFV 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   ++   +S  G+  H+P  R+ NL   +  + +    TI  + SD     +  
Sbjct: 134 SEKTADIYNSKTLRSMQGSHFHLPIYRV-NLLSLVNDLKNADVTTIATTLSDHSCDYKSL 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            K +  ALI+G EG+G+  +  E A  + H+ MPG  ++LNV+
Sbjct: 193 KKVENFALIMGNEGQGITSEMAEQADVLTHITMPGRAESLNVA 235


>gi|271970249|ref|YP_003344445.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
 gi|270513424|gb|ACZ91702.1| rRNA methylase protein [Streptosporangium roseum DSM 43021]
          Length = 274

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 94/244 (38%), Gaps = 8/244 (3%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K+   +  +++ Q+         +     ++GV  ++ A+ +       L      L+  
Sbjct: 3   KVTARNALFQQWQALLTNRTKRQRTGEFLIHGVRPITLAVEHGWPLRTLLYPAGQRLSAW 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLD 139
                     P+  V P+ + ++  +E+    L      LL   LD +R     L +  D
Sbjct: 63  ARRLIDDSGVPLAEVAPELLWELGERESETPELIA-VGALLPDDLDRLRPGPGFLGVAFD 121

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
              +P NIG ++RSA AF   G+I T   +        ++++G+L  +P +R  +  D L
Sbjct: 122 RPGNPGNIGTLVRSADAFGAAGLIVTGHAADVYDPKSVRASTGSLFSLPVVRRPSPDDVL 181

Query: 200 QKMHSWG-----FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             + +        + +G       P+          L++G E  G+  + +E    +  +
Sbjct: 182 DWVGAQRDGGLPIRIVGTDESGSTPISGCDLTVPTLLVVGNETAGMSARWREMCDEVVRI 241

Query: 255 HMPG 258
            M G
Sbjct: 242 PMGG 245


>gi|319406810|emb|CBI80443.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
           1-1C]
          Length = 271

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 106/262 (40%), Gaps = 18/262 (6%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             +R+ ++     ++ +  ++ + +        S+ L++       LL     L  +   
Sbjct: 17  EAYRNIREKDLVGRQHQFVAEGKTIL-------SSLLHSKEFSTLSLLVVAARLLSIMPI 69

Query: 85  ANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRNSQLLMVLD 139
                P  P+  VP + +D I G   VH+G+      +  P L   L  +    L+ VL 
Sbjct: 70  LKETKPTCPIYCVPQKIMDDIAGFH-VHRGMLGIGERKKLPSLKKFLQNLPEKALISVLC 128

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            +++  ++GAI R+A AF+  GII  K           ++++GA   +PY R  ++   +
Sbjct: 129 GISNYESMGAIFRNAAAFASTGIILDKTCCDPLYRKSIRASAGAALSVPYTRGDDIESII 188

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
             +    F+   LS  +   L+        ALI G EG  L     + +     + M   
Sbjct: 189 TALSDANFELYTLSPSATCYLKDAKATKHTALIFGIEGNDLPTHILQKS-ETLRIPMAYG 247

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             ++N++  + + L     HFA
Sbjct: 248 FDSINLATVSGLTL----AHFA 265


>gi|307128744|ref|YP_003880774.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
 gi|306483206|gb|ADM90076.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
          Length = 246

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 94/244 (38%), Gaps = 10/244 (4%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV 105
            + L +YG++ +  A+    +     L    +         +      K    + I+   
Sbjct: 3   KKRLIIYGINPLYEAIKYKKKIYKIFLIKNLSKKNSKLKKIIEFSKKKKIKIIEKINFKK 62

Query: 106 GKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  HQG+     P+    ++ +           LL++LD + D  N G+++R++    
Sbjct: 63  LIKKNHQGVFAFINPIKFSKIEYIIPNIFFSGKIPLLLILDSITDVRNFGSLVRTSACTG 122

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D II T       ++   K++SG L  +P  + +N+   ++ + + G Q I ++  +  
Sbjct: 123 VDAIIITNYN--IVNSDSIKTSSGGLFKVPICKENNIIKIIKFLKNSGIQVIAVTEKTNS 180

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQ 277
                   +  A ILG E KG+         +   L  +   + +LNVS A    LY   
Sbjct: 181 ICYNINYRNPTAFILGNEEKGISKNYLSICNNTVKLPLLKNSLSSLNVSVACGAILYEAI 240

Query: 278 NHFA 281
              +
Sbjct: 241 RQRS 244


>gi|270295097|ref|ZP_06201298.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274344|gb|EFA20205.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 175

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   +++  + +    L++VLD++   HNIG++ R++ AF  + I      +   
Sbjct: 4   LKITELNRISVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITAIPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKI 229
              + K+A GA   + +  + N  +A+  + S G+    +  ++    L++    K  K 
Sbjct: 64  HPEMHKTALGAEFTVDWKYVDNSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLDKTKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG++ +  + +     +   G   +LNVS  A + ++
Sbjct: 124 AVVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|40715982|gb|AAR88654.1| rRNA methylase-like protein [Viscum album]
          Length = 368

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 1/150 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  + +V++   D  NI A+ RSA A     +      S          + GA + +  
Sbjct: 168 RSYSVWLVVEGATDFGNISAVFRSADALGLQSVHVISCGSSKRYRENRHVSMGAEKWLDI 227

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  +  + + S G++ +    +S    +         A++ G E +G+  +    +
Sbjct: 228 ELWDSTQECFRNLKSRGYRIVTAHLESDAVSIYNMDWTSPTAIVTGNEKRGISEEALGLS 287

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                + M G++ +LNVS AA + ++    
Sbjct: 288 DLHCSIPMRGMVDSLNVSVAAGILMHHAVR 317


>gi|320102938|ref|YP_004178529.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644]
 gi|319750220|gb|ADV61980.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644]
          Length = 284

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 104/270 (38%), Gaps = 34/270 (12%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-HP 90
           K Q+ N+  R         + G   V   L   + ++  +L  ++ +   +    LP   
Sbjct: 24  KKQNVNRDGRR------FVVEGWKLV-ERLARSAHRLETVLVVEDQV---ELARRLPVEE 73

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV----------RNSQLLMVLDH 140
             + T+  + +  +VG    HQG+        +PTL+ +              +++V   
Sbjct: 74  LTIFTLSRERLRDLVGFN-FHQGVLGCGIRADAPTLNQLLAASQRVTARSGRSVVLVCPA 132

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           + +P N+GA++R        G++         S  + + + GA    P +  SN+  AL 
Sbjct: 133 LFNPENLGALIRLGDVMGAVGLVVGPGCPDPLSRRVTRVSMGASLAFPVVEASNVAAALD 192

Query: 201 KMHSWGFQTIGLS------------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   G   +  +              +  P ++    D++AL+LG+E  GL P   + A
Sbjct: 193 YLAGLGDHLLAAAVCEPAGPSALKPGATVVPFDRITWPDRVALLLGSEAHGLEPCWVQRA 252

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  + M     +LN++ A  + LY    
Sbjct: 253 DQLTTIVMRPGADSLNLAVATGILLYHLTR 282


>gi|311746904|ref|ZP_07720689.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
 gi|126578593|gb|EAZ82757.1| tRNA guanosine-2'-O-methyltransferase [Algoriphagus sp. PR1]
          Length = 234

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEH 186
           A R     +VL+++  PHN  A+LR+   F    + I  K      +  + + AS  L  
Sbjct: 34  AQRTRHFTVVLENIYKPHNASAVLRTCDCFGIQDVHIIEKTREYKVNPFVTRGASQWLTL 93

Query: 187 IPYIRISNLTDAL----QKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLR 241
             Y +     +A+      + S GF+  G S D +  P++    N+KIAL+ G E +G+ 
Sbjct: 94  HKYFQPEEPENAVINCFSSLKSNGFKIYGTSPDPQTRPIQDLDPNEKIALVFGNEHEGIS 153

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + +  A  + H+ M G  ++ N+S AA++ L
Sbjct: 154 NEVKNAADGLVHIPMRGFTESFNISVAASLFL 185


>gi|15605128|ref|NP_219913.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789134|ref|YP_328220.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|3328830|gb|AAC68000.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX]
 gi|76167664|gb|AAX50672.1| 23S rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|296435924|gb|ADH18098.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9768]
 gi|296436851|gb|ADH19021.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11222]
 gi|296437785|gb|ADH19946.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/11074]
 gi|297140285|gb|ADH97043.1| 23S rRNA methyltransferase [Chlamydia trachomatis G/9301]
 gi|297748533|gb|ADI51079.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-EC]
 gi|297749413|gb|ADI52091.1| 23S rRNA methyltransferase [Chlamydia trachomatis D-LC]
          Length = 269

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 14/256 (5%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF----QLLATKN-ALARLDWDANLPH 89
           +   K +         L G   +  AL +  R       +L+A K  AL R      +  
Sbjct: 14  ALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALDRELTSLGIEK 73

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPH 145
            +         ++K+  KE     +A+     LS      L     +   ++++    P 
Sbjct: 74  LY----CSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVEQAEKPG 129

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR A     DG+I         +  + +S+ G +  +P    ++L + L  +H  
Sbjct: 130 NIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPV-WQASLKEVLDLVHQQ 188

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +Q    +  ++     +     + ++ G+E  GL P     +     L M G   +LN+
Sbjct: 189 EWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGKADSLNL 248

Query: 266 SNAAAVALYITQNHFA 281
           S++ A   Y      +
Sbjct: 249 SSSVAAVAYEVVRQRS 264


>gi|313206520|ref|YP_004045697.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445836|gb|ADQ82191.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315023539|gb|EFT36543.1| RNA methylase, SpoU family protein [Riemerella anatipestifer RA-YM]
 gi|325336032|gb|ADZ12306.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 176

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 3/154 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            T      + L++VLD++   HN+GA+ R+A AF  + I+            + K+A GA
Sbjct: 16  ETFKKTSKTPLVVVLDNIRSMHNVGALFRTADAFLIEKIVLCGITPQPPHREIHKAALGA 75

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            E + ++   ++++A++++ + G+  IG    +        +   N K AL+LG E +GL
Sbjct: 76  TESVDWVYQKDISEAIKELKTQGYNIIGVEQTTDSISLSDFEINPNQKYALVLGNEVEGL 135

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +      +   +   G   +LNVS    + ++
Sbjct: 136 SDEALPLYDNFIEIPQLGTKHSLNVSVCGGIVIW 169


>gi|257455361|ref|ZP_05620596.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
 gi|257447323|gb|EEV22331.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
          Length = 258

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 105/263 (39%), Gaps = 14/263 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            +++   K   +   +SR   +     + G H + A L N       ++ +++ L   + 
Sbjct: 5   SKDNPTIKTTHALLTQSRQRKKLGKTVIEGTHLLEAYL-NAGLTPETVIVSESGLHNDEI 63

Query: 84  DANLPHPFPVKT--VPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           +A L     VKT  V      +I    E++     +    +     +    S  L++ + 
Sbjct: 64  NALLGRLNQVKTLTVSDNLYKEIRTLGESLP---IMAMIDMPHLDFNQPITSDCLII-NG 119

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V D  N+G + R+A A     I+ T   + + S    ++  GA   +      ++ + L 
Sbjct: 120 VQDNGNLGTLFRTASAVGIKTIVCTMGTASAWSPKTLRAGMGANFSLTIFEGISVDEILM 179

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           K+          SS +   + Q      +ALI+G EG+G+  +    + +   L  P   
Sbjct: 180 KVK---VPMFATSSHTDHIIYQTDLRQPLALIMGHEGQGVDERLLSQS-APIALPQPNGQ 235

Query: 261 KALNVSNAAAVALYI--TQNHFA 281
           ++LNV+ A ++ LY    Q  +A
Sbjct: 236 ESLNVAIAGSLCLYEMLRQRRYA 258


>gi|300778322|ref|ZP_07088180.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300503832|gb|EFK34972.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 241

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 107/247 (43%), Gaps = 21/247 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K +QS ++K +   +     + G + +   L N + K+ ++L+T     +LD       
Sbjct: 7   IKVLQSLDKK-KFRQKYNLFLVEG-NKIICELFNSNFKVKEILSTD--PQKLDRT----- 57

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             PV  +    + KI       +             L+   +  + +VLD + DP N+G 
Sbjct: 58  DIPVTHISENELKKI-SFLKTPKDSVAVCYLAEEKKLE---DKNIQLVLDGIQDPGNLGT 113

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F  + +I ++      +  + ++  G+   +  +  ++L + L K  +     
Sbjct: 114 IIRLADWFGIEQVICSEDTVDVYNPKVIQATMGSFTRVNVVY-TDLVEYLSKTENVN--- 169

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVS 266
           IG   + +  +    K +KI LILG EG G+RP+T++       +   G     ++LNVS
Sbjct: 170 IGTDMEGEN-IYTFEKPEKINLILGNEGNGMRPETEKLLQKSISIPRFGKSQSTESLNVS 228

Query: 267 NAAAVAL 273
            AA + L
Sbjct: 229 MAAGIIL 235


>gi|325110483|ref|YP_004271551.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
 gi|324970751|gb|ADY61529.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
          Length = 270

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 104/274 (37%), Gaps = 23/274 (8%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           KI SL+D   A+       Y+ +++ +    H          G   V   L +    +  
Sbjct: 5   KIDSLQDDRLAQ-------YRDLRNKS----HYRTTGYFVAEGWRVVERLLRSG-LTVDS 52

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           +L ++                 V  +P +  +++VG    H G+        +P+L A+ 
Sbjct: 53  ILVSERRAE--LMVPKFADRADVLILPQREAEELVGYN-FHGGVLASALKPDNPSLSALL 109

Query: 131 NSQL---LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           N      ++   H+  P N+G++ R A  F   GI+  +           + + G +  +
Sbjct: 110 NGPPTAPVLCCPHLTGPDNLGSLTRLAAGFGAAGILLGEGSVDPYLRRCVRVSMGTIFQM 169

Query: 188 PYIRISNLTDALQKMH-SWGFQTIGL-SSDSKKPLEQ---EIKNDKIALILGAEGKGLRP 242
           P     ++   LQ++        +    S+  +PL +        +  L+LG E  GL  
Sbjct: 170 PIRTAESVLAELQQLKTEHNCDLLAAEDSEQSRPLYELPAATPGKRRVLLLGNEADGLGQ 229

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +   ++  + M   + +LN++NAA + LY  
Sbjct: 230 PFLKLVDAVYDIPMADGVDSLNIANAAGIFLYEL 263


>gi|194333759|ref|YP_002015619.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
           DSM 271]
 gi|194311577|gb|ACF45972.1| tRNA guanosine-2'-O-methyltransferase [Prosthecochloris aestuarii
           DSM 271]
          Length = 216

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           L   R   L +V+D+VN PHN+ AI+R+  +   + I               K+A G+  
Sbjct: 13  LLEQRQPDLTVVMDNVNKPHNLAAIIRTCDSVGIETIHAVSNR--PSIRKKQKTAGGSTR 70

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            +      ++ +    + S G + +    S +             A+++GAE  G    T
Sbjct: 71  WVQLSLHESMENLANTLKSNGTRLLAAHYSSTSVDFRSIDYTRPTAIVMGAEKLGPSSDT 130

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   H+ M G+ ++LNVS AAAV L+  Q   
Sbjct: 131 ISLVDQAIHIPMQGMAESLNVSVAAAVILFEAQRQR 166


>gi|160888065|ref|ZP_02069068.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
 gi|156862376|gb|EDO55807.1| hypothetical protein BACUNI_00473 [Bacteroides uniformis ATCC 8492]
          Length = 175

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 80/165 (48%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   +++  + +    L++VLD++   HNIG++ R++ AF  + I      +   
Sbjct: 4   LKITELNRISVEEFKEAEKLPLVVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKI 229
              + K+A GA   + +  + N  +A+  + S G+    +  ++    L++ +  K  K 
Sbjct: 64  HPEMHKTALGAEFTVDWKYVDNSVEAVDNLKSEGYIVYSVEQAEGSVMLDELVLNKTKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+++G E KG++ +  + +     +   G   +LNVS  A + ++
Sbjct: 124 AVVMGNEVKGVQQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIW 168


>gi|319403804|emb|CBI77388.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 271

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 98/242 (40%), Gaps = 11/242 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDK 103
           +       G   +S+ L++       LL     L  +        P  P+  VP + +D 
Sbjct: 30  RQHQFIAEGKTILSSLLHSKEFSTLSLLVVAARLLSIMPILKETKPTCPIYCVPQKIMDD 89

Query: 104 IVGKEAVHQGLA----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           I G   VH+G+      +  P L   L  +    L+ VL  +++  ++GAI R+A AF+ 
Sbjct: 90  IAGFH-VHRGMLGIGERKKLPSLKKFLQNLPEKALISVLCGISNYESMGAIFRNAAAFAS 148

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII  K           +++SGA   +PY R  ++   +  + +  F+   LS  +   
Sbjct: 149 TGIILDKTSCDPLYRKSIRASSGAALSVPYTRGDDIESIITALSNANFKLYTLSPSATCY 208

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L+        ALI G EG  L     + +     + M     ++N++  + + L     H
Sbjct: 209 LKDAKATKHTALIFGIEGNDLPTHILQKS-ETLRIPMAYGFDSINLATVSGLTL----AH 263

Query: 280 FA 281
           FA
Sbjct: 264 FA 265


>gi|258406290|ref|YP_003199032.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
           DSM 5692]
 gi|257798517|gb|ACV69454.1| tRNA guanosine-2'-O-methyltransferase [Desulfohalobium retbaense
           DSM 5692]
          Length = 202

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 2/167 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E        + A R   L +V+++++DPHN+ AI+RS  AF    +      S +  A+ 
Sbjct: 13  EAREKRIREVLARRQKDLTLVMNNIHDPHNVAAIMRSCDAFGVPDVHLL-YTSEAFPALG 71

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGA 235
            ++++ A + +     ++       +   G + +  S S S +PL +       A++LG 
Sbjct: 72  RRASASARKWVGRHHHTSSEALAGHLRDHGMRILSTSCSPSARPLPEWEFTSPTAIVLGN 131

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           E +G+ P  +        + M G++++ NVS AAA+ LY       +
Sbjct: 132 EHRGVDPALRSHIDGELFIPMQGMVQSFNVSVAAAIILYEAWRQRNR 178


>gi|149378386|ref|ZP_01896087.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
           DG893]
 gi|149357335|gb|EDM45856.1| tRNA (guanosine-2'-O-)-methyltransferase [Marinobacter algicola
           DG893]
          Length = 245

 Score =  152 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 6/166 (3%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AV 175
           E    +  TLD  R   L ++ D V+ P N+ AI+RS  AF    +       P E    
Sbjct: 4   ERLARIKQTLDT-RQPDLSVLTDQVHKPRNLSAIIRSCDAFG---LANMHVVWPREGFRA 59

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
             K+A G+   +       + DA+ ++   G +      SD      +        +I+G
Sbjct: 60  FRKTAGGSYNWVTTHTHPTMDDAVSELKGQGHKLYAAQLSDRAIDYREADFTVPCTVIMG 119

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+     E A     + M G++++LNVS+A A+ L   Q   
Sbjct: 120 NEVDGVSHGAAEQADEHIVIPMMGMVESLNVSSACAIILSEAQRQR 165


>gi|317485615|ref|ZP_07944491.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923152|gb|EFV44362.1| SpoU rRNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 196

 Score =  152 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 7/174 (4%)

Query: 114 LALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           +A E        L+ V   R   L +VL +++DPHN+ AI RSA AF    +     Y+ 
Sbjct: 1   MAREITERRRAKLERVLRWRQKDLTLVLANIHDPHNVSAIYRSADAFGVAALHLY--YTD 58

Query: 171 SESAVLAK-SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
           +    L K S++ A + +  +R  +  +    + + G Q +  S +   KPL        
Sbjct: 59  TAFPELGKKSSASARKWVESVRHRSAEELYAALKAGGHQILATSCTPESKPLGAYDFTKP 118

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A+I+G E  G+  +         ++ M G+I++ NVS AAAV L        +
Sbjct: 119 TAVIMGNEHSGVPAELNSLVDGEVYIPMYGMIQSFNVSVAAAVILSEASRQRVQ 172


>gi|313888401|ref|ZP_07822069.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845598|gb|EFR32991.1| RNA methyltransferase, TrmH family [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 248

 Score =  152 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 96/254 (37%), Gaps = 15/254 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA--LARL 81
            +N+  YK ++   +K +H  + +   +     +  A      +I  L  +++A    + 
Sbjct: 5   SKNNNTYKFLKGLLEK-KHRQESKLFMVEKPVVIEEA---EGFEIKYLALSESAYRSNKF 60

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           +          +          +        G+    + L     D  R S   + LD +
Sbjct: 61  EKIIKNLDQDKIFVFSDNIFKNLCDAVTSP-GIIAYYSYLRR---DFDRTSGKFLYLDDI 116

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            +P N+G I+RSA A   DG+I +       +    +S+  ++  +P   +     A + 
Sbjct: 117 REPGNLGGIIRSADALGLDGLIISPESCDLYNPKTVRSSMSSIFRLPIYFM-----ARED 171

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +    F  +  S ++          DK  +++G E KG+       A    ++ +   + 
Sbjct: 172 LVDLDFNILATSLENSTSTRDYDFKDKDIVVIGNEAKGVSDFLMTHAKGFLNIPISDKVD 231

Query: 262 ALNVSNAAAVALYI 275
           +LN + AA++ +Y 
Sbjct: 232 SLNANVAASIIIYE 245


>gi|305664506|ref|YP_003860793.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
 gi|88708523|gb|EAR00759.1| putative tRNA/rRNA methyltransferase [Maribacter sp. HTCC2170]
          Length = 240

 Score =  152 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 98/243 (40%), Gaps = 19/243 (7%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           Q+ ++ +Q     + G+ +V   LN+      ++     +L  ++ ++ L     V+ + 
Sbjct: 14  QQKKYRNQHRMFAVEGIKSVKELLNSNIEA-HKVYCVNPSL--IENESGL-----VELIS 65

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                KI        G+       + P    V  +  L+ LD V DP N+G I+R    F
Sbjct: 66  AGDFKKI-STLKNPNGVL---GVFIIPKPKVVDQNDWLLALDDVRDPGNLGTIIRLCDWF 121

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++ ++      +  + +++ G++  +  +  ++L   L++         G   ++ 
Sbjct: 122 GIKNLLCSENTVDCFNPKVLQASMGSITRVNVVY-TDLVTFLEQTK---LPVYGTFMNAA 177

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYI 275
               + +    I L++G EG G+    +    S   +   G    ++LNV++A ++ L  
Sbjct: 178 SVYNKALPKKGI-LVMGNEGNGISSDIENLVNSKISIPQFGDKATESLNVASATSIFLSE 236

Query: 276 TQN 278
            + 
Sbjct: 237 IRR 239


>gi|221106776|ref|XP_002159774.1| PREDICTED: similar to rRNA methyltransferase 1, mitochondrial,
           partial [Hydra magnipapillata]
          Length = 227

 Score =  152 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 91/242 (37%), Gaps = 49/242 (20%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKN------ALARLDWDANLPHPFPVKTV--PPQTID 102
           L+G+    AA+    RKIF++               L       +   +K V      +D
Sbjct: 11  LFGIAPCLAAILAGRRKIFKVYLNDKLEEEEPRRKELVQLVAEANERNIKLVYKSRPILD 70

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           ++ G    HQ                              DP N+GAI+RSA  F  D I
Sbjct: 71  RLCG-GRPHQ------------------------------DPMNLGAIIRSATYFGVDKI 99

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-----SSDSK 217
           I  ++ S   +A ++K +SGA+E        ++   L+ + ++ +  IG      +    
Sbjct: 100 IVNEKNSCGLTATVSKVSSGAMEWASVYSTRDMQRLLKDLLNYDWNLIGTVTKDYTQSKV 159

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAAVA 272
                   + +  L++G EG G+ P      T +  +      +P  + +LNVS A  + 
Sbjct: 160 HSCHDVQLSKRNVLVIGNEGFGMNPLITSICTKLVTIPSFNDRLPEGLDSLNVSVATGIL 219

Query: 273 LY 274
           L+
Sbjct: 220 LH 221


>gi|301630620|ref|XP_002944414.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like
           [Xenopus (Silurana) tropicalis]
          Length = 278

 Score =  152 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 12/258 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALAR 80
            R++   K ++   Q S    +   ++L G H   A L    R    + +      A ++
Sbjct: 10  SRDNAFVKDLRRLAQDSTAYRKQGRIWLEGDHLCRALLARGQRPAVAVFSASFWSLAQSQ 69

Query: 81  LDWDANLPHPFPVKTVPPQTI-DKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLLMVL 138
               +          V    +   I G EA   QG+        +P   A++     +VL
Sbjct: 70  SQSQSQYTQAAMKNIVLADALWADISGLEAPAPQGMGFVLDRAAAP---ALQPGVATVVL 126

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D + D  N+G+ILRSA AF    ++  K  +   S  + ++  GA   +  I        
Sbjct: 127 DRLQDAGNVGSILRSASAFGFAQVLALKGCAALWSPKVLRAGMGAHFALRLIEGG----G 182

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L ++ + G   +  SS     L +       A +LG EG+G+ P  +  A     +  PG
Sbjct: 183 LAQIRALGLPLLATSSHQGDYLHRAALPWPCAWVLGHEGQGVAPALEALAAQRIRIAQPG 242

Query: 259 IIKALNVSNAAAVALYIT 276
             ++LNV+ AAA+ L+ +
Sbjct: 243 GEESLNVAAAAAICLHAS 260


>gi|124007486|ref|ZP_01692192.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134]
 gi|123987142|gb|EAY26891.1| RNA methyltransferase, TrmH family [Microscilla marina ATCC 23134]
          Length = 255

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 92/248 (37%), Gaps = 7/248 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           + R YK + S   K ++  Q +   + G  +V   L +  R + +L  T +         
Sbjct: 7   SKRQYKLLHSLQVK-KYRKQHQAFLVEGEKSVVETLQSAYR-VSELYCTADFAQNYAPII 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V       + K    +  +  LA+   P  +P +  +  ++  +VLD + DP 
Sbjct: 65  E-TSATKVLVATANELKKGSHFQTNNSCLAIVQLPEPTP-IAPLAQNEYALVLDGIQDPG 122

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  +    I+ +       +  +  S  G+   +     ++L      + + 
Sbjct: 123 NLGTIVRIADWYGIRSILCSPDTVDVYNPKVIASCMGSFLRVNIHY-TDLEAYFPSLAAP 181

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             +  G   D     E     +   ++LG E KG+R            +   G  ++LNV
Sbjct: 182 --KVYGAFLDGANLHEWSFPKEAGYIVLGNESKGIRASMASHIQQKITIPRFGQAESLNV 239

Query: 266 SNAAAVAL 273
           + A A+  
Sbjct: 240 AMATAIIC 247


>gi|320528151|ref|ZP_08029316.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
 gi|320131499|gb|EFW24064.1| RNA methyltransferase, TrmH family, group 3 [Solobacterium moorei
           F0204]
          Length = 238

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 6/212 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKIV 105
           + L G  +V AA+    RK+ +L   K+   +         +    P   +  + I+ + 
Sbjct: 1   MLLEGNVSVKAAILGNHRKVEKLYYDKHKNDKDLNFILHRAMEKEIPCMPLEREEINAMA 60

Query: 106 GKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                H GL  E +P +   L       +  L++L+ V DP N+G I+R+  +  CDG+I
Sbjct: 61  A-GRTHGGLVAEASPRIYQELSECMHGKTPFLVLLEGVEDPFNLGYIIRTLYSAGCDGLI 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +    S  + +AKS++GA E++  +   +L   ++ +   G +T            + 
Sbjct: 120 LPRHDWASAESTIAKSSAGAFEYMNIVMSDDLPKLVKDIKKQGIKTYAAMRKDAITYLEA 179

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                  L +G E +GL    +       ++ 
Sbjct: 180 DYRQPCLLAIGGEMRGLSSAVRNEIERNIYIP 211


>gi|297588550|ref|ZP_06947193.1| rRNA methylase [Finegoldia magna ATCC 53516]
 gi|297573923|gb|EFH92644.1| rRNA methylase [Finegoldia magna ATCC 53516]
          Length = 243

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 99/252 (39%), Gaps = 20/252 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +++ YK ++S  +K       E   + G      A+ +       +L     L       
Sbjct: 6   SNKIYKHVKSLYKKKYRYKYNE-FVIEGYKLYEEAIKSNLNIKQIILREGEDLID----- 59

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                        +T + +       +G+      +          +  ++ L+ +NDP 
Sbjct: 60  ------GCVCFDSKTFNSLSEMN-NPEGIICVVDFIEKKD----NYTDKILFLECINDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+RSA AF  + II +       +    +SA G+L  I     S     L+   S 
Sbjct: 109 NLGTIIRSAEAFGYNNIILSDNSCDIYNLKTIRSAMGSLFRINISYES--IHVLENYKSN 166

Query: 206 GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           GF+    S + + K + +    +K  LI+G E  G+  + ++ A     + M  + ++LN
Sbjct: 167 GFKIYETSLEKNSKSILEIKDKEKHVLIIGNEANGISDEIKKYADEFLIIPMDNVTESLN 226

Query: 265 VSNAAAVALYIT 276
            S AA+++++  
Sbjct: 227 ASIAASLSMFYL 238


>gi|212550666|ref|YP_002308983.1| rRNA methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548904|dbj|BAG83572.1| putative rRNA methyltransferase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 180

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                 V+ + L++VLD++   +N+G++ R+  AF  + +      +   +  + K+A G
Sbjct: 14  KEDFKEVKKNPLVVVLDNIRSLNNVGSVFRTCDAFRVETVYLCGITAIPPNVEIHKTALG 73

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGL 240
           A + + +         ++++H  G+Q I +    +  +  E ++   K A+ILG E  G+
Sbjct: 74  AEDSVNWKYSPITLRIVEELHQKGYQIIAVEQAEESIMLDEFQSKYSKQAIILGNEVHGI 133

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
             +      +   +   G   +LNVS  A + ++  T+N F +
Sbjct: 134 DQEVMNQCDACIEIPQFGTKHSLNVSITAGIVIWEITKNSFIR 176


>gi|256587794|gb|ACU98926.1| rRNA methylase family protein [Propionibacterium jensenii]
          Length = 169

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            + ++  L+V + + D  N+GAI+R A     DG++   R +        K++ G +  +
Sbjct: 11  DLMSADRLVVCEDIVDHTNVGAIIRCAAGLGWDGVLLAPRAADPLYRRAIKTSMGTVFAL 70

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-----KNDKIALILGAEGKGLR 241
           P+ R+S+    L  +   GF    ++ SD    L++       +  K+AL++G EG GL 
Sbjct: 71  PWARLSDWCQGLGHLKEHGFTIAAMALSDDSVSLDEFAAQLRSRPRKVALLMGTEGAGLS 130

Query: 242 PKTQETATSMAHLHMPGIIKALN 264
                 A  +  + M   + +LN
Sbjct: 131 SHWVNQADVVVRIPMHHGVDSLN 153


>gi|224370833|ref|YP_002604997.1| SpoU [Desulfobacterium autotrophicum HRM2]
 gi|223693550|gb|ACN16833.1| SpoU [Desulfobacterium autotrophicum HRM2]
          Length = 291

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 4/144 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIR 191
              + LD +    N+G+I RS  A     +I     +P  E+A + K+A G  + +P+ +
Sbjct: 133 DFHIALDGLRSLFNVGSIFRSCDAAGFSSLIL--GNTPGRENAAVRKTAMGTADWMPHTQ 190

Query: 192 ISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +L   L  M + G+    + +++  KP      + +  L++G E  G+          
Sbjct: 191 TVDLAQTLVDMKAQGYTITAVETAEQSKPYHDNDWHHRGVLVVGNEEYGISSHVLAVCDQ 250

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
           + H+ M G   +LNV+NAAA+ ++
Sbjct: 251 VVHIPMFGRKNSLNVANAAAILMF 274


>gi|72382704|ref|YP_292059.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str.
           NATL2A]
 gi|72002554|gb|AAZ58356.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL2A]
          Length = 278

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 108/270 (40%), Gaps = 21/270 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   +K++   +K+    +  +L L G H +  AL         +   +      + 
Sbjct: 4   SKRNPLVRKLRGLLKKT-GREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHEEI 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     +  V    ++  +       G+A      +     + +  + ++ LD + D
Sbjct: 63  LKKIASRTLLTLVTKNVLETSLST-VTPDGVAAIFP--MQGLPKSGKAPKHILALDRIQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDA 198
           P N+G + RSA+A   + +      +   +  + +S++G++ H+P+ RI     S++   
Sbjct: 120 PGNLGNLFRSALAGEYEAMWLASG-ADPLNQKVLRSSAGSVLHMPFERIGHSSSSSIEML 178

Query: 199 LQKMHSW---GFQTIGL------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + K++      +Q +G       +    KP  +   +    L+LG EG G+    +   T
Sbjct: 179 VSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCT 238

Query: 250 SMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
               L    ++ +LNV+ +AAV  L   Q 
Sbjct: 239 DFVTLPHSSLVDSLNVA-SAAVPLLLERQR 267


>gi|313886769|ref|ZP_07820476.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923810|gb|EFR34612.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 262

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 11/251 (4%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           H + K ++S  Q ++H  Q       G   +   L  P+ +   L+ T+  +  L     
Sbjct: 14  HAEVKLIKSL-QLTKHRKQSNLFIAEGEKLIGEML--PAYRCQLLVGTEELVKPLLGRCP 70

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V    P+ I+++ G ++    LAL   P +     A++     ++LD V DP N
Sbjct: 71  ESIAEAVILPDPKQIERVSGLKSPRPLLALCEIPAVEAP-QALQQP--TLLLDDVQDPGN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G +LR+        ++ T+  +   +  + ++  GAL  +   R ++    L  +    
Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADVYAPKVLQATMGALARVQVYRYTDRAALLTMLKKTE 187

Query: 207 FQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKA 262
              IG   D   PL   +        L+LG EG G+        +    +  P     ++
Sbjct: 188 IPVIGTFIDGA-PLRTLRLAPEQPYILVLGNEGNGISSDLSALVSQRITIPSPVDNHCES 246

Query: 263 LNVSNAAAVAL 273
           LNV+ A A+ +
Sbjct: 247 LNVAVAGAIVM 257


>gi|288928749|ref|ZP_06422595.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329733|gb|EFC68318.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 177

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L      A     L++VLD+V   HN+G++LRS  AF  + +      +   SA 
Sbjct: 7   IEMHRLTVDEFKAASKLPLVVVLDNVRSLHNVGSVLRSCDAFRVEAVYLCGITATPPSAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALI 232
           + K+A GA + + +   +  +DA+ ++H+ G +   +   +   + Q ++    ++ A++
Sbjct: 67  IHKTALGAEDSVTWKYFAETSDAVDELHANGTKVFAVEQVANATMLQSLETKGGERYAVV 126

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LG E KG++    +       +   G   +LNVS AA + ++     FAK
Sbjct: 127 LGNEVKGVQQTVVDRCDGCLEIPQFGTKHSLNVSVAAGIVVWE----FAK 172


>gi|237751640|ref|ZP_04582120.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
 gi|229373006|gb|EEO23397.1| tRNA methyltransferase [Helicobacter bilis ATCC 43879]
          Length = 235

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 6/227 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + ++G       +++    I ++   K+    L       +  P+  +  +    +  + 
Sbjct: 1   MIIFGKQCFEYVIHHAPTHIQEIYLAKDIEKPLFAKLKRLN-VPILRIDNKKAQSLA-RG 58

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             HQG+  +  P+      A+ +   L+VL  ++D  NIGAI+R+A A    GI+ + R 
Sbjct: 59  KNHQGVFAKIKPIEQTPFKALLDFSSLVVLCGMSDIGNIGAIVRTAYALGIGGIVISDRD 118

Query: 169 SPSESAV--LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
           + +  A+  + +S+SGAL ++P+    +      +     F  IG   ++K  LE     
Sbjct: 119 TLNTQALEGIFRSSSGALLNMPFSFHKSSLSVANEAKMKQFTLIGAGKNNKNILES--TP 176

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +K A+ +G E  GL  K         H+ M     +LN S AA + +
Sbjct: 177 NKWAIFIGREDTGLPQKLLNKLDYALHIAMCNGFDSLNASVAAGILI 223


>gi|332291128|ref|YP_004429737.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169214|gb|AEE18469.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 246

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 100/253 (39%), Gaps = 18/253 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K++ S  QK ++  +       G+  V   LN+   ++ +L A    ++         +
Sbjct: 7   IKRITSLGQK-KYRQRERVFVAEGIKVVHELLNSD-LELVELYA--EDVSSFAKALQNKN 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V+ V    + KI   +   + +A    P  +     +  S L ++LD V DP N+G 
Sbjct: 63  QAIVEEVSTADLKKITFLKTTQKAVATFRMPEAAQ----LDRSGLTLLLDDVRDPGNLGT 118

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ-KMHSWGFQ 208
           I+R    F    ++ +       +  + ++  G+L  +  I  +NL + L+         
Sbjct: 119 IIRLCDWFGIKQLVCSIGTVDCYNPKVVQATMGSLTRVDVIY-TNLEEYLENDSRE---- 173

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNV 265
             G   D        +  + + +I+G E  G+  +T+   ++   +   G     ++LNV
Sbjct: 174 VFGTFMDGTNIYNTSLPAEGV-IIMGNEANGISRETEAVVSNRIAIPRFGDLQETESLNV 232

Query: 266 SNAAAVALYITQN 278
           + A A+ L   + 
Sbjct: 233 ATATAICLSEFKR 245


>gi|45187604|ref|NP_983827.1| ADL269Wp [Ashbya gossypii ATCC 10895]
 gi|44982342|gb|AAS51651.1| ADL269Wp [Ashbya gossypii ATCC 10895]
          Length = 397

 Score =  152 bits (385), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 119/321 (37%), Gaps = 60/321 (18%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH-----TSQPENLFLYGVHTVSA 59
           S+K+     + K     K         + +  + KSRH     T  P    +YG +++  
Sbjct: 68  SRKRDAHTETSKTPQVRKRAAAPVGDAQPRRSSFKSRHAFDPLTPDPLLDRIYGRNSILL 127

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           AL +  R+ F  L     L              V++     ++ +    AVH GL LE  
Sbjct: 128 ALQSNRREYFVRLLHSGNLDPQIAKLAGQLGIKVQSAQRHQLNMMT-NNAVHNGLVLEAK 186

Query: 120 PLLSPTLDAV--------------------------------RNSQLLMVLDHVNDPHNI 147
           PL    ++A+                                +   + + LD V DPHN+
Sbjct: 187 PLYPQEINALGAVDHEAGTFELIDQWSNNGTAQKVPFLQSAKKRYPVGLYLDEVVDPHNV 246

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GAILRSA     D +  + R S   SA ++K++SGALE +P   +       ++      
Sbjct: 247 GAILRSAYFLGADFVAVSHRNSAPLSAAVSKTSSGALEVLPIYSVDKPLQFFERSRDEHD 306

Query: 208 QTI---------GLSSDSK------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                       G+SS  K      + +    ++  + L++G EG G+R   Q+ +    
Sbjct: 307 WVFVASHLTQGPGISSHVKNRVLPIEDMADLAQSSPVMLVVGNEGTGIRSNLQQRSDFFV 366

Query: 253 HLHMPGI------IKALNVSN 267
            +   G       + +LNVS 
Sbjct: 367 QVP-FGRADEPQLVDSLNVSV 386


>gi|332883970|gb|EGK04250.1| hypothetical protein HMPREF9456_01278 [Dysgonomonas mossii DSM
           22836]
          Length = 250

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 104/253 (41%), Gaps = 17/253 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S  +K ++ ++       G   VS  L  P  K   L+AT   L      A++ + 
Sbjct: 9   KYIRSLKEK-KYRTEFGTFVAEGHKMVSDLL--PFIKCQLLVATPEFLK----SADVANV 61

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  V  + + +    +   Q   L          D   + +L++ LD + DP N+G I
Sbjct: 62  EEVIEVNDRELAQASFLQNPQQ--VLAVFYQSENVTDIKIDDELVLALDGIQDPGNMGTI 119

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I  ++      +  + ++  GAL  +     ++L+D L    +      
Sbjct: 120 IRLADWYGIHHIFCSQDTVDVYNPKVVQATMGALARVNIHY-TDLSDFLT--RNKHLSVY 176

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVS 266
           G   D +   E++I +  I +++G EG G+RP+ +   T   ++          ++LNV+
Sbjct: 177 GTFLDGENMYEKKITSHGI-IVMGNEGNGIRPEIERLITEKLYIPNYPVGNPTSESLNVA 235

Query: 267 NAAAVALYITQNH 279
            A A+     +  
Sbjct: 236 IATAIICAEFRRR 248


>gi|288927754|ref|ZP_06421601.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330588|gb|EFC69172.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 263

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 96/260 (36%), Gaps = 20/260 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K +++   K +H          G   V   L     K+  L+AT    A       +  
Sbjct: 8   IKYIRALETK-KHRDAEGVFVAEGPKVVGELLAKTPAKL--LVATPQWRA----SNAVQE 60

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP----TLDAVRNSQLLMVLDHVNDPH 145
              + TV    + K+   +A  Q   L   P L      T   V  ++L ++LD + DP 
Sbjct: 61  GTELITVSNDELHKLSFMQAPQQ--VLAVFPKLYEGESTTAGNVETNELTLMLDGIQDPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F    ++ +       +  + ++  G++  +       L   L  +   
Sbjct: 119 NLGTIIRLADWFGIRHVVCSTDTVDVYNPKVVQATMGSIARVKVSYTP-LETLLDALP-P 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIK 261
            F   G   D      Q++    I +++G EGKGL    ++  T    +          +
Sbjct: 177 SFPVYGTLLDGDNIYTQQLCAYGI-IVMGNEGKGLSQGVRKRVTHRLLIPSFAIGEERAE 235

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+NA A+     +   A
Sbjct: 236 SLNVANATAIVCAEFRRQGA 255


>gi|229917708|ref|YP_002886354.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
 gi|229469137|gb|ACQ70909.1| tRNA guanosine-2'-O-methyltransferase [Exiguobacterium sp. AT1b]
          Length = 254

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 5/147 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIP 188
           R + + ++ + V+DPHN  A+LRSA AF    +   +  +    ++++AKSA      + 
Sbjct: 54  RTNHITILTEGVDDPHNQSAVLRSADAFGVQTLHVVEGRAKFKPNSIIAKSAD---RWVD 110

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +   ++ +A+  +   G+Q    + S+   PLE+   +    L+ G E  G+       
Sbjct: 111 VVEHGSIEEAIDALKESGYQVYATALSEEAIPLEEVDVSKPTVLLFGNEHSGVSETALHK 170

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G +++LN+S AAA++LY
Sbjct: 171 ADGNFVIPMQGYVQSLNISVAAAISLY 197


>gi|15639048|ref|NP_218494.1| hypothetical protein TP0054 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025288|ref|YP_001933060.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322312|gb|AAC65050.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017863|gb|ACD70481.1| hypothetical protein TPASS_0054 [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059469|gb|ADD72204.1| RNA methyltransferase, TrmH family [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 319

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 104/258 (40%), Gaps = 17/258 (6%)

Query: 31  KKMQSFNQKSRH--TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN-- 86
           K+ Q+ +Q S      +  +L + G+  V    +    KI +   T     R        
Sbjct: 6   KREQARSQLSHEPPKRRRASLTVCGLRAVETLGSIHPEKIHRFFFTPVRAKRFGPLCAYL 65

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA------VRNSQLLMVLDH 140
                  ++   Q ++++  +   HQG+A        P +        V+  + +++LD 
Sbjct: 66  AARKRLYRSANTQELERLT-QSVHHQGVAATIDEPRFPAVTHSQVEFWVQRREFVVLLDR 124

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTDAL 199
           V D HN+GAI+RSA  F    ++ +        ++   + A G +E +  +R +N  + L
Sbjct: 125 VGDAHNLGAIIRSAAFFGVHSLVVSDCRQQAQVTSATYRVAQGGMEFVQLLRCTNAQEVL 184

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +         +G S  + + L +        + + L+LG E  GL          +  + 
Sbjct: 185 EMCAGK-MTRVGASPHAFRSLTRLSNILSPEEAVILVLGNEETGLSEHLTAHCDHLCRIA 243

Query: 256 MPGIIKALNVSNAAAVAL 273
             G +++LNV+ A A+ L
Sbjct: 244 GSGQVESLNVAQAGALFL 261


>gi|255348768|ref|ZP_05380775.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70]
 gi|255503308|ref|ZP_05381698.1| 23S rRNA methyltransferase [Chlamydia trachomatis 70s]
 gi|255506987|ref|ZP_05382626.1| 23S rRNA methyltransferase [Chlamydia trachomatis D(s)2923]
 gi|289525445|emb|CBJ14922.1| 23S rRNA methyltransferase [Chlamydia trachomatis Sweden2]
 gi|296434997|gb|ADH17175.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/150]
 gi|296438717|gb|ADH20870.1| 23S rRNA methyltransferase [Chlamydia trachomatis E/11023]
          Length = 269

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 14/256 (5%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF----QLLATKN-ALARLDWDANLPH 89
           +   K +         L G   +  AL +  R       +L+A K  AL R      +  
Sbjct: 14  ALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALDRELTSLGIEK 73

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPH 145
            +         ++K+  KE     +A+     LS      L     +   ++++    P 
Sbjct: 74  LY----CSKGILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVEQAEKPG 129

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR A     DG+I         +  + +S+ G +  +P    ++L + L  +H  
Sbjct: 130 NIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPV-WQASLKEVLDLVHQQ 188

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +Q    +  ++     +       ++ G+E  GL P     +     L M G   +LN+
Sbjct: 189 EWQVFTTTPSAQTFYFDQDFCQPTVVVFGSEKDGLSPDWLNGSFCNIALPMLGKADSLNL 248

Query: 266 SNAAAVALYITQNHFA 281
           S++ A   Y      +
Sbjct: 249 SSSVAAVAYEVVRQRS 264


>gi|146299225|ref|YP_001193816.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146153643|gb|ABQ04497.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 242

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 95/251 (37%), Gaps = 20/251 (7%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+ S   + +     +  F  GV  +   L +   ++  L  T N    +          
Sbjct: 8   KLISSLHQKKQRFANQLFFAEGVKVIQELLQSN-FELEHLYTTLNDFEEVQSSKR----- 61

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
               +  Q + KI      +  LA+   P+ +  +    NS L++ LD + DP N+G I+
Sbjct: 62  --TLINEQELKKISALTTPNSCLAVFKMPVENQII----NSGLILALDDIRDPGNLGTIM 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F    I+ +K      +  + ++  G++  +    + +L   L +         G
Sbjct: 116 RLCDWFGIKQIVCSKETVDIYNPKVVQATMGSIARVNVNYV-DLKAFLSQTK---LPVFG 171

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNA 268
              D    + Q        +I+G E  G+  + ++  T+   +   G     ++LNV+ A
Sbjct: 172 TFMDG-DTIYQSNLPQNGIIIMGNEANGISAEIEKIVTTRLTIPRFGELQKTESLNVATA 230

Query: 269 AAVALYITQNH 279
            A+ L   + +
Sbjct: 231 TAIILSEFKRN 241


>gi|315127020|ref|YP_004069023.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp.
           SM9913]
 gi|315015534|gb|ADT68872.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas sp.
           SM9913]
          Length = 243

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 97/248 (39%), Gaps = 15/248 (6%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + ++  Q     + G   V   LN+P  K+  + AT+N +          H  
Sbjct: 8   KLIRQLGQKKYRKQLNQYLVQGEKNVLELLNSP-LKVTDVFATQNFIDNNQSAYPQTHFI 66

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
              T   + + K+     V    A+    + S TL     + L++ LD V+DP N+G I+
Sbjct: 67  ---TADEEQLTKVS--TLVSNNAAIAIVDMPSTTLPD--ENSLILALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    I+ +   +   +     +  G+   +   ++ +L   L  +        G
Sbjct: 120 RVADWYGIKHIVASTDSADPYNPKTISATMGSFVRVSVSQV-DLPSYLTSL---DVPIYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              + +  +       K  L++G+E  G+R +     T+   +   G  ++LNV+ A  +
Sbjct: 176 AFLEGEN-VHHCQFAGKGVLLMGSESHGIRQQCAALVTNKITIPAFGGAESLNVAMATGI 234

Query: 272 AL--YITQ 277
            L  +  Q
Sbjct: 235 ILDNFKRQ 242


>gi|218960735|ref|YP_001740510.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
 gi|167729392|emb|CAO80303.1| putative rRNA methylase [Candidatus Cloacamonas acidaminovorans]
          Length = 246

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 24/246 (9%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--H 89
           +  S  ++ +   Q   + + G            R + QL A       L    + P   
Sbjct: 17  RYLSKLKQKKFRLQEGLVIVEG-----------KRTLEQLFAWDIKAKELYIVESEPIVS 65

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                TV  Q + ++   E   +   L + P       A + +     LD ++DP N+G 
Sbjct: 66  AAISYTVSEQGMKRLCDSEQPQKIAGLFSLPKPRKI--AFKKA---FYLDDISDPGNLGT 120

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I R A AF+ D +I + +     S  + +++ GA+  +P+         ++K+       
Sbjct: 121 IFRIAAAFNIDCLILSPKTCEISSPKVIRASLGAVYKVPFFFCE-----MEKLQELKAHI 175

Query: 210 IGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             L    K PL      ++   + LG E KG+     + A     + MPG +++LNVS +
Sbjct: 176 FALDMQGKIPLTNFAPPSEPYIVALGNEAKGISSSILKIAEETLCIPMPGEMESLNVSVS 235

Query: 269 AAVALY 274
           +A+  Y
Sbjct: 236 SAILAY 241


>gi|124023679|ref|YP_001017986.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963965|gb|ABM78721.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 275

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 22/237 (9%)

Query: 58  SAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
              L    R   +++AT   L R  D    LP    +  V P  ++  +   +   G+A 
Sbjct: 37  QEVLRTTHRP-KEIVATNFWLERHGDLVQALPAETLIHLVTPSVLEASLTTVSPD-GVAS 94

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                L     AV  ++ ++ LD + DP N+G +LR+A+A   + +      +   S  +
Sbjct: 95  LVP--LDSLPQAVNQAKFVLALDRLQDPGNLGTLLRTALAAEVEAVWLASG-ADPLSPKV 151

Query: 177 AKSASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGL------SSDSKKPLEQ 222
            ++++GA+  +P+ R        +  L + L+   S G Q +        ++ S  P  Q
Sbjct: 152 LRASAGAILQLPHERFGSSGQEAVEQLAEQLECAASRGLQVVATMVPASSAAHSCLPYWQ 211

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
                   L+LG EG GL P+ QE  T    L     +++LNV+ A AV  L   + 
Sbjct: 212 LDWRKPTVLVLGNEGSGLHPRLQECCTDCVTLPHSAAVESLNVA-AVAVPLLLERRR 267


>gi|24380097|ref|NP_722052.1| putative rRNA methylase [Streptococcus mutans UA159]
 gi|24378093|gb|AAN59358.1|AE015001_3 putative rRNA methylase [Streptococcus mutans UA159]
          Length = 246

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 12/223 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +  +  + G H  + A  N +  I  +   +   +R+    N      V  V    +  +
Sbjct: 24  RQYSYLIEGWHLFAEAQANNA-DIINIFVLECYASRVSEFPN------VVLVSEDILKDL 76

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
                  QG+  E A              LL  L+ V DP N+G I+R+A A + D +  
Sbjct: 77  SAS-KTPQGIVAEIAFPKQVIPQQFFGKYLL--LEDVQDPGNVGTIIRTADAAAFDAVFV 133

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE 223
           +++ +   ++   +S  G+  H+P  R+ NL   +  + +    TI  + SD     +  
Sbjct: 134 SEKTADIYNSKTLRSMQGSHFHLPIYRV-NLLSLVNDLKNADVTTIATTLSDHSCDYKSL 192

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
            K +  ALI+G EG+G+  +  E A  + H+ MPG  ++LNV+
Sbjct: 193 KKVENFALIMGNEGQGITSEMTEQADVLTHITMPGRAESLNVA 235


>gi|300727201|ref|ZP_07060617.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14]
 gi|299775439|gb|EFI72033.1| tRNA/rRNA methyltransferase [Prevotella bryantii B14]
          Length = 257

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 102/253 (40%), Gaps = 19/253 (7%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALN--NPSRKIFQLLATKNALARLDWDANLPHPFPVKT 95
           ++ +H  +       G   V   L   NP      ++AT+  L     + N+ H   V  
Sbjct: 14  EQKKHRKEEGVFVAEGPKIVGDLLKLLNP----TLIVATQKWL----LENNVSHNCEVIE 65

Query: 96  VPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
              + + K+   +   Q LA+  +        L ++   +L + LD V DP N+G I+R 
Sbjct: 66  ATAEELRKVSFLQHPQQVLAVFPQFKNETDKNLVSLPTQKLTLALDDVQDPGNLGTIIRI 125

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F  + I+ +   +   +  + ++  G++  +     ++L   L+++        G  
Sbjct: 126 ADWFGIENIVCSMDTADIYNPKVIQATMGSIARVKITY-TDLKQYLKQI-DKSTPIYGTL 183

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAA 269
            D K   +QE+ +  + +I+G EGKG+ P      T    +           +LNV+ A 
Sbjct: 184 LDGKNIYQQELSSHGL-IIMGNEGKGISPDIAAMVTHKLLIPNYPEGKDTADSLNVAIAT 242

Query: 270 AVALYITQNHFAK 282
           A+     + +  +
Sbjct: 243 AITCSEFRRYGNR 255


>gi|297807561|ref|XP_002871664.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317501|gb|EFH47923.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 350

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 8/185 (4%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V     + ++ +      H    +E        +   R+  + +V++ ++D  NI A  R
Sbjct: 122 VHLSSREVLEAVT----PH---MMEERTDRFRRVVENRSFSVCLVVEGLSDFGNISAAFR 174

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           SA A     +      S          + GA + +         +  + + S G++    
Sbjct: 175 SADALGIQSVHVVSCGSSKRYNGNRHVSMGAEKWLDIEFWDTPKECFKVLKSRGYRIATT 234

Query: 213 SSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                   +     +   A+++G EG+G+  +  E +     + M G++ + NVS AA +
Sbjct: 235 HLGMDTVSIYDMDWSCPTAIVVGNEGRGICDEALELSDLRCSIPMNGMVDSFNVSVAAGI 294

Query: 272 ALYIT 276
            ++  
Sbjct: 295 LMHHA 299


>gi|304382953|ref|ZP_07365435.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
 gi|304335978|gb|EFM02226.1| TrmH family RNA methyltransferase [Prevotella marshii DSM 16973]
          Length = 278

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 114/286 (39%), Gaps = 15/286 (5%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  IS+ + E +    D  +  +    ++  K     Q+ ++          G  TV   
Sbjct: 1   MYDISRIQRETLPLQCDFLHKFVMMIGKNKIKFIRSLQQKKNRMAEGLFVAEGPKTVGEL 60

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L  P      L+ATK  +A    +   P    V  V  + + KI   +   Q + +   P
Sbjct: 61  L--PVFNATLLIATKEWMA----ENASPAGVEVIVVEEEMLGKISFLQHPQQVIGIFRIP 114

Query: 121 LLS--PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             S   +L  + +S L++ LD V DP N+G I+R A  F    +  +   + + +  + +
Sbjct: 115 DDSNDASLFQLPDSDLVLALDGVQDPGNLGTIIRIADWFGITTLFCSPDTADAYNPKVVQ 174

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           +  G++  +  +  ++L D L  +H       G   + +   +Q +  + + +++G EGK
Sbjct: 175 ATMGSIARVRLVY-TDLKDLLDALH-PDTPVYGTLLNGEDIYQQSLSRNGL-IVMGNEGK 231

Query: 239 GLRPKTQETATSMAHLHM----PGIIKALNVSNAAAVALYITQNHF 280
           GL        T    +          ++LNV+ A AV     +  F
Sbjct: 232 GLSKAIASRVTHRLLIPSFPTEKPTAESLNVAIATAVVCAEFRRRF 277


>gi|332876719|ref|ZP_08444477.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332685278|gb|EGJ58117.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 260

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 95/259 (36%), Gaps = 13/259 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDWDA 85
           ++  K+    ++ +   + +     G   V   L  P+     L A K  L   R   + 
Sbjct: 4   KNKIKLIRSLEQKKFRKECQLFVAEGHKLVDDLL--PAFDCAFLAARKEWLDTRREAVET 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDHVNDP 144
                  ++ V  + + K    +   Q + +      +    + +   QL + LD V DP
Sbjct: 62  LARKGCEIQEVSAEELQK-ASLQKNPQDVLVVFRQRPAGGAPEHLLKEQLCLGLDGVQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R A  F  + I  +   +   +    ++  GA+  +    + +LTD L+   +
Sbjct: 121 GNLGTIIRIADWFGIEHIFCSPDTADLYNPKTVQATMGAMARVCVHYL-SLTDLLRT-AN 178

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GII 260
                 G   D       E+  + + +++G EGKG+            ++          
Sbjct: 179 ADIPVYGTFLDGNDMYGTELSPNGL-IVMGNEGKGISRDVASLINRKLYIPNYPPERNTS 237

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+ A A+     +  
Sbjct: 238 ESLNVAVATAIVCAEFRRR 256


>gi|262394780|ref|YP_003286634.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
 gi|262338374|gb|ACY52169.1| RNA methyltransferase TrmH family [Vibrio sp. Ex25]
          Length = 244

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 99/249 (39%), Gaps = 14/249 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S K+  + AT+   A L+ +A+    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLKVKHVFATE---AFLEQNASALSG 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P++   +   L++ LD V+DP N+G I
Sbjct: 63  FDCIEASLDDLTKASTLVSNN----AAIAVVEIPSVKVPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEEANLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + E   + I L++G+E  G+R +  +  T+   +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTEFAAEGI-LLMGSESHGVREEAAKLVTNKITIPAFGGAESLNVAMATG 233

Query: 271 VALYITQNH 279
           + L   + H
Sbjct: 234 IILDNMRRH 242


>gi|294783897|ref|ZP_06749219.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
 gi|294479709|gb|EFG27488.1| 23S rRNA methyltransferase [Fusobacterium sp. 1_1_41FAA]
          Length = 261

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 92/209 (44%), Gaps = 6/209 (2%)

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +++  +  +  L  +           V  +   ++  +E   QG+ +      +  L+ +
Sbjct: 52  EIIIVREDVKDLYMEKLNRFECKKILVNEKIFQELSSQE-NSQGIII-VYSKKNNDLNCL 109

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N+  L++LD V DP N+G I+R   A +   II TK    + +  + ++  G++ ++  
Sbjct: 110 SNN--LVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDAYNEKVIRATMGSILNVNL 167

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             +    + ++ +    +  I    D +  P  +    +K A+I G EG+G+  +    +
Sbjct: 168 FYLEK-QEIIKLLKENNYSIIATYLDKEALPYNKIKLKEKNAVIFGNEGRGISDEFVSIS 226

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + +    ++LNV+ A+A+ LY  +
Sbjct: 227 DCKTVIPILSNTESLNVAVASAIILYKFR 255


>gi|288799931|ref|ZP_06405390.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333179|gb|EFC71658.1| RNA methyltransferase, TrmH family [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 256

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 18/244 (7%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +   Q E LF+  G   ++  L     K   + +T + L              +  +   
Sbjct: 23  KKNRQQERLFVAEGPKVIADLLT--KIKAHTIFSTSSKLKEFSS----KQADNIIEITDS 76

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + KI   +   Q   L   P   PT +A   +QL++ LD V DP N+G I+R A  F  
Sbjct: 77  ELSKISFLQHPQQ--VLAVFPFF-PTTEATPQNQLILALDGVQDPGNLGTIIRIADWFGI 133

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+ ++      +  + +++ G++  +      +L + ++ + +      G   D +  
Sbjct: 134 KNIVCSEDTVDVYNPKVIQASMGSVAQVSVNYC-DLKNFIENI-APKVPVYGTCLDGENI 191

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNAAAVAL--Y 274
             Q + +  I +++G EGKG+    ++  T    +        I +LNV+ A A+    +
Sbjct: 192 YNQTLSSKGI-IVMGNEGKGVSTAIKQLFTHKLLIPNYHPQSAIDSLNVAIATAITCAEF 250

Query: 275 ITQN 278
             QN
Sbjct: 251 KRQN 254


>gi|120555648|ref|YP_959999.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325497|gb|ABM19812.1| tRNA guanosine-2'-O-methyltransferase [Marinobacter aquaeolei VT8]
          Length = 244

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 5/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEHIP 188
           R   L ++ D V+ P N+ AI+RS  AF    +       P E      K+A G+   + 
Sbjct: 16  RQPDLRVLTDQVHKPRNLSAIIRSCDAFG---LANMHVVWPKEGFRAFRKTAGGSFHWVT 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 + +A+ ++ + G +      SD      +        +I+G E  G+ P T E 
Sbjct: 73  THTHPTMDNAVTELKAQGHKLYAAQLSDRAVDFREVDYTVPCTIIMGNEVDGVNPVTAEQ 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS+A ++ L   Q   
Sbjct: 133 ADEHIVIPMMGMVESLNVSSACSIILSEAQRQR 165


>gi|121608425|ref|YP_996232.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121553065|gb|ABM57214.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 274

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 12/251 (4%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           R++   K+++   Q S    +   L+L G H   AAL    R    + A           
Sbjct: 12  RDNAFVKELRRLAQDSTAYRRQGRLWLEGEHLCRAALARQLRPSIAVFAESFWPQAQAEY 71

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
           A       V   P      I   E+  + G  L+      P   +++     +VLD V D
Sbjct: 72  AQDASKIMVLAEP--LFAGISALESPARMGFILDL-----PAPASLQPGAATVVLDRVQD 124

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N+G+ILRSA AF    ++  K  +   S  + ++  GA   +  I  +   +    + 
Sbjct: 125 AGNMGSILRSAAAFGFRQVLALKGSAALWSPKVLRAGMGAHFALNLIEAAGPAE----LQ 180

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +     +  S  + + L +       A I+G EG+G+ P     A     +  PG  ++L
Sbjct: 181 ALQLPMLVTSPHAGEYLHRATLPWPCAWIMGHEGQGVTPALTAKAALRIRIAQPGGQESL 240

Query: 264 NVSNAAAVALY 274
           NV+ AAA+ L+
Sbjct: 241 NVAAAAAICLH 251


>gi|88861117|ref|ZP_01135751.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
 gi|88816839|gb|EAR26660.1| putative tRNA methyltransferase (tRNA mG18-2'-O-methyltransferase)
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 7/155 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-AKSASGALEHIP 188
           R   L + LD V+  HN+ AI+RSA A     I       P     L + ++ G+     
Sbjct: 16  RQIDLTLCLDEVHKHHNLSAIVRSADAVGIHHI---HSVWPEGGKRLTSSTSGGSKNWTE 72

Query: 189 YIRISNLTDALQKMHSW--GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                 + DA+  + S     Q +    S+              A+ILG E  G+  +  
Sbjct: 73  NHIHHTVEDAIATIRSRTPNVQILATHFSEQAVDFRAIDYTRPTAIILGQEKFGISDQAL 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A     + M G++++LNVS AAA+ LY  Q   
Sbjct: 133 ALADQHIIIPMVGMVQSLNVSVAAAIILYEAQKQR 167


>gi|47458955|ref|YP_015817.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458283|gb|AAT27606.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 231

 Score =  151 bits (383), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 102/240 (42%), Gaps = 30/240 (12%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
              Q     + G H V  AL      + ++ A+              +   V      + 
Sbjct: 17  FRDQENFFIIEGFHLVEEALK--KDIVVEIYAS----------VEFKNAIKVSQSIIDS- 63

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
              +      Q +      +    ++    S+ ++VL+++NDP N+G ++RSA AF  + 
Sbjct: 64  ---ISSNKTSQPIIAICKKM---NVNYEVKSKRILVLENINDPGNLGTLVRSAFAFGFND 117

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I         +    +++ GA  ++  I++ N  D L+ +H   +Q    +  S     
Sbjct: 118 VIVEG--VDIYNHKFLQASQGAFFYVNLIKVKNAVDFLKSLH--NYQIYVTTLRSDAFEY 173

Query: 222 QEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++N K +AL+LG E  G+  + ++ A+ + ++      ++LNV++A A+ L    NHF
Sbjct: 174 DAVENPKWLALVLGNEANGISLEMEKLASKLIYI--KTNFESLNVASAGAILL----NHF 227


>gi|114319697|ref|YP_741380.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226091|gb|ABI55890.1| tRNA guanosine-2'-O-methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 220

 Score =  151 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++LD V+ PHN+ AILR+  A          R+      V   ++SG  + +  
Sbjct: 16  RQPDLQVLLDQVHKPHNLSAILRTCDAVGVPRAHAVSRHQD--FTVHRAASSGTGQWVAV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              ++L  A++ +   G +      S+      Q        L+LGAE +G+  +    A
Sbjct: 74  ETHADLPAAVRAVQGQGMKVYAAHLSEQAVDYRQVDYTKPCCLLLGAEKEGVSEEGAALA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G+  +LNVS AAAV L+  Q   
Sbjct: 134 DGHVIIPMFGLGASLNVSVAAAVILFEAQRQR 165


>gi|88802138|ref|ZP_01117666.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
 gi|88782796|gb|EAR13973.1| RNA methyltransferase, TrmH family protein [Polaribacter irgensii
           23-P]
          Length = 243

 Score =  151 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 98/250 (39%), Gaps = 20/250 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+ +   + ++  +       G+  V+  L +   ++  +  T      L          
Sbjct: 9   KLITSLSQKKYRQKHNLFIAEGIKVVNELLQSD-FEVALIFCTNEFKTSLPKAK------ 61

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            +  V    ++KI   ++ ++ L+L   P   P    ++NS L++ LD +NDP N+G I+
Sbjct: 62  -IVRVSETELNKISSLKSPNKVLSLFKIPEDKP----IQNSGLILALDAINDPGNLGTII 116

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F    +I +K      +  + +++ G+L  I    +    D    +      T  
Sbjct: 117 RLCDWFGISQLICSKDTVDCYNQKVVQASMGSLTRISIQYL----DLKNYLDKSPLPTFI 172

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNA 268
              + +   +  +  + I L++G E  G+  + +        +   G     ++LNV+ A
Sbjct: 173 ADMNGENIYKTNVPKEGI-LVMGNEANGVSEEIKNQVQHKISIPRFGETQKTESLNVAMA 231

Query: 269 AAVALYITQN 278
            A+ +   + 
Sbjct: 232 TAILISEFKR 241


>gi|150024430|ref|YP_001295256.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149770971|emb|CAL42438.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 242

 Score =  151 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 20/254 (7%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           R+  K+ +   + ++  Q +  F  G   +   L +   ++  L  TK   + +      
Sbjct: 4   RNQIKLITSLVQKKYRKQYQLFFAEGAKVIQELLQSN-FELEHLYCTKPMFSDVSELKK- 61

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                   +    + KI      +  LA+   P        + NS L++ LD + DP N+
Sbjct: 62  ------TIISDSDLKKITALTTANDCLAVFKIPQEKQ----IENSGLIVALDDIRDPGNL 111

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R    F    I+ +++     +  + ++  G++  +    + +L   L +  +   
Sbjct: 112 GTIIRLCDWFGIAQIVCSEQTVDVYNPKVVQATMGSITRVNITYL-DLETYLAEAKTA-- 168

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALN 264
              G   D K   + ++    I ++LG E  G+    +E  T    +   G     ++LN
Sbjct: 169 -VFGTFMDGKDIYKTQLPPSGI-IVLGNEANGISKIIEEKVTQKITIPRFGDLQRTESLN 226

Query: 265 VSNAAAVALYITQN 278
           V+ A A+ L   + 
Sbjct: 227 VATATAIVLSEFKR 240


>gi|325088121|gb|EGC41431.1| RNA methyltransferase [Ajellomyces capsulatus H88]
          Length = 462

 Score =  151 bits (383), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 100/366 (27%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           ++ +E++    +     L R+     ++     +S   +   + F+YG   V AAL    
Sbjct: 59  ERNAERLAERSEQTEYTLERSPHTQPQVSITAPRSIPYTTAASEFVYGSSAVLAALRCGR 118

Query: 66  RKIFQLLATKNALARLDWDAN----------------LPHPFPVKTVP---PQTIDKIVG 106
           RK+++L    NA  ++                     L     VK V    P+ ++K+ G
Sbjct: 119 RKLYKLYI-HNAPDKVSLRLGRHSPRDPMLDTIIKFGLAAGVSVKQVAGNWPKLLEKMSG 177

Query: 107 KEAVHQGLALETAPLLSPTLDAV------------------------------------- 129
               H G  LE + L    ++ +                                     
Sbjct: 178 -GRPHNGCILEASQLPKLPVNGLLAVESPLDNHFNVSVCQQSVEEADVNGTSGRIPRSTY 236

Query: 130 ---------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                                ++LD + D  N+GAI+RSA  F  D II + R S + SA
Sbjct: 237 RDGDSSSTGNDIKLAPRYPFALLLDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSATISA 296

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGF---------------QTIGLSSD---S 216
           V  K+++GA E+IP +  +N T  L+  H  G+               Q++  S++   S
Sbjct: 297 VAVKASAGAAENIPILTTTNPTLFLKNTHMNGWRFFAAEAPAAAIASQQSLSTSAEQILS 356

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSN 267
           ++ ++ ++      L+LG+E +GL+   ++ A  +  +              + +LNVS 
Sbjct: 357 RRDVKSKLNEAPCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSV 416

Query: 268 AAAVAL 273
           A+A+  
Sbjct: 417 ASALLC 422


>gi|254571825|ref|XP_002493022.1| Ribose methyltransferase [Pichia pastoris GS115]
 gi|238032820|emb|CAY70843.1| Ribose methyltransferase [Pichia pastoris GS115]
          Length = 397

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 129/331 (38%), Gaps = 64/331 (19%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKK-------------MQSFNQKSRHTSQPEN----L 49
           +  +  F  K +H    ++  R  K+             +   +++ R    P+      
Sbjct: 62  EDKDTWFKRKYAHVHAKQKQVRLDKEAARTQKFPSRNSDLSPDSKQIRRNRPPKENPLEE 121

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGK 107
            ++G   V AAL   +R+    L   N   + +    L       +K V  +    ++  
Sbjct: 122 RIFGAQAVLAALKANNREFLSTLYVHNPKEKHEEITELCKERGVDIKLVDSKNDLNLLCN 181

Query: 108 EAVHQGLALETAPLLSPTLDAVRN------------------------------SQLLMV 137
             VH G  L+ A   +  L A+                                  L + 
Sbjct: 182 NNVHNGYVLKAAKFQTRELAALSTVTSKGVFSLTLQDYGVRSEEQFEVQRLNGSFPLGVY 241

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +D V+DPHN+GAI+RS+     D +   ++     ++V +KS++G +E +P   +     
Sbjct: 242 IDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVVKPLQ 301

Query: 198 ALQKMHSWGFQTI-GLSSDSKKPLEQEIKND---------KIALILGAEGKGLRPKTQET 247
            L+  +  G+ T+  +SS  KK   +E+ ++            LI+G+EG G+R    + 
Sbjct: 302 FLEAANENGWATVSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKSLLDR 361

Query: 248 ATSMAHL-----HMPGIIKALNVSNAAAVAL 273
           ++ +  L     ++   + +LNVS A AV L
Sbjct: 362 SSHLVSLKSQRKNLDSSVDSLNVSVATAVLL 392


>gi|218131716|ref|ZP_03460520.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
 gi|217986019|gb|EEC52358.1| hypothetical protein BACEGG_03337 [Bacteroides eggerthii DSM 20697]
          Length = 176

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L +VLD++   HNIG++ R++ AF  + I      +      + K+A GA
Sbjct: 16  EEFKEAEKLPLTVVLDNIRSLHNIGSVFRTSDAFRIECIYLCGITATPPHPEMHKTALGA 75

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ--EIKNDKIALILGAEGKGL 240
              + +  ++N  +A+  + + G+    +  ++    L +    K+ K  +++G E KG+
Sbjct: 76  EFTVDWKYVNNTVEAVDNLKNEGYTVYSVEQAEGSIMLNELTLDKSRKYTIVMGNEVKGV 135

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +  + +     +   G   +LNVS  A + ++   N  
Sbjct: 136 QQEVIDHSHGCIEIPQYGTKHSLNVSVTAGIVIWDLFNKL 175


>gi|78779779|ref|YP_397891.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
 gi|78713278|gb|ABB50455.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9312]
          Length = 237

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 17/214 (7%)

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           ++L T+  L + +  +    P  +  V  + +   +       G+A        P     
Sbjct: 10  KILVTEKWLRKNENLSKKLQPSLINIVSEEVLASAIST-INPDGIAALVEISSIPNYQFN 68

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                ++VL+ + DP N+G++ R+A+A   D I+     +   S  + +++SGA+ H+P+
Sbjct: 69  IKDDFVLVLERIQDPGNMGSLFRTALAAGVDAILLAGG-AHPLSQKVLRASSGAVFHLPF 127

Query: 190 IRISNLTDA--------LQKMHSWGFQTIGLSSDSKK------PLEQEIKNDKIALILGA 235
           +R     +         L ++ + GF+    SS +K       P  +       ALILG 
Sbjct: 128 LRFDGTEEEILNSLCKSLYELSNVGFKIFTTSSHNKSSKKSSKPYWEIDWTKSTALILGN 187

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVS-NA 268
           EG+G+  K QE       +    ++++LNV+  A
Sbjct: 188 EGQGIHKKIQEAFNETITIPHSELVESLNVACVA 221


>gi|260903735|ref|ZP_05912057.1| rRNA methylase [Brevibacterium linens BL2]
          Length = 147

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GAI RSA AF  D ++ T R +        + + G +  +P+ RI +    +  +   
Sbjct: 11  NVGAIFRSAAAFGVDAVLVTPRCADPLYRRSIRVSMGTVFQVPWTRIESWPAGVDSLREL 70

Query: 206 GFQTIGLSSDSKKP---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           GF    L+ +              ++ A++ G EG GLR  T     S   + M G + +
Sbjct: 71  GFHVAALALEQDSVAIRDFAANAPERTAIVFGTEGDGLRRSTIAACDSTVMIPMSGGVDS 130

Query: 263 LNV 265
           LNV
Sbjct: 131 LNV 133


>gi|237802828|ref|YP_002888022.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274062|emb|CAX10856.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
          Length = 269

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 14/256 (5%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF----QLLATKN-ALARLDWDANLPH 89
           +   K +         L G   +  AL +  R       +L+A K  AL R      +  
Sbjct: 14  ALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALDRELTSLGIEK 73

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPH 145
            +         ++K+  KE     +A+     LS      L     +   ++++    P 
Sbjct: 74  LY----CSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVEQAEKPG 129

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR A     DG+I         +  + +S+ G +  +P    ++L + L  +H  
Sbjct: 130 NIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGIVFTMPV-WQASLKEVLDLVHQQ 188

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +Q    +  ++     +     + ++ G+E  GL P     +     L M G   +LN+
Sbjct: 189 EWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGKADSLNL 248

Query: 266 SNAAAVALYITQNHFA 281
           S++ A   Y      +
Sbjct: 249 SSSVAAVAYEVVRQRS 264


>gi|328352968|emb|CCA39366.1| RNA methylase [Pichia pastoris CBS 7435]
          Length = 344

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 129/331 (38%), Gaps = 64/331 (19%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKK-------------MQSFNQKSRHTSQPEN----L 49
           +  +  F  K +H    ++  R  K+             +   +++ R    P+      
Sbjct: 9   EDKDTWFKRKYAHVHAKQKQVRLDKEAARTQKFPSRNSDLSPDSKQIRRNRPPKENPLEE 68

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGK 107
            ++G   V AAL   +R+    L   N   + +    L       +K V  +    ++  
Sbjct: 69  RIFGAQAVLAALKANNREFLSTLYVHNPKEKHEEITELCKERGVDIKLVDSKNDLNLLCN 128

Query: 108 EAVHQGLALETAPLLSPTLDAVRN------------------------------SQLLMV 137
             VH G  L+ A   +  L A+                                  L + 
Sbjct: 129 NNVHNGYVLKAAKFQTRELAALSTVTSKGVFSLTLQDYGVRSEEQFEVQRLNGSFPLGVY 188

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           +D V+DPHN+GAI+RS+     D +   ++     ++V +KS++G +E +P   +     
Sbjct: 189 IDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCMEFLPIFNVVKPLQ 248

Query: 198 ALQKMHSWGFQTI-GLSSDSKKPLEQEIKND---------KIALILGAEGKGLRPKTQET 247
            L+  +  G+ T+  +SS  KK   +E+ ++            LI+G+EG G+R    + 
Sbjct: 249 FLEAANENGWATVSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVGSEGDGIRKSLLDR 308

Query: 248 ATSMAHL-----HMPGIIKALNVSNAAAVAL 273
           ++ +  L     ++   + +LNVS A AV L
Sbjct: 309 SSHLVSLKSQRKNLDSSVDSLNVSVATAVLL 339


>gi|158336981|ref|YP_001518156.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158307222|gb|ABW28839.1| RNA methyltransferase, trmH family [Acaryochloris marina MBIC11017]
          Length = 279

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 89/252 (35%), Gaps = 9/252 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGV----HTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +++      R+       F+ GV    H   + L+       + L T   LAR       
Sbjct: 20  RIKRLQTDRRYRDAQGACFIEGVRNFVHVSDSRLDIAVIVYSEKLLTA-PLARKLVRRFR 78

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                  +V P+    I        G+                +  L ++LD V    N 
Sbjct: 79  RSGVETISVSPEQFRGISQTHRAS-GIGAIIRQRWQRLPSITPSMGLWVILDRVRSLGNF 137

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL-QKMHSWG 206
           G ++R+  A    G I   +     +    +++ G++    +IR  +   AL Q +    
Sbjct: 138 GTLIRTLDAGGGTGFILLNQAVDPYAPSTVRASMGSVFQQQFIRTHD--QALSQWLQQHQ 195

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
              IG S D ++            L LG E  GL PK +    ++  + M G + +LNV+
Sbjct: 196 GYVIGASPDGEENFHTFTYPKNTLLFLGEERTGLSPKQRSLCNTLLKIPMVGQVDSLNVA 255

Query: 267 NAAAVALYITQN 278
            A ++ +Y    
Sbjct: 256 VAGSLFIYEVLR 267


>gi|326335202|ref|ZP_08201398.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692610|gb|EGD34553.1| TrmH family RNA methyltransferase [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 242

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           + ++     + G  ++   L     K   + AT      L          P+  V P+ +
Sbjct: 18  YRNELGLFVVEGKKSIIEFLKAGY-KAKAIYATNAFSPHLV-------GHPLILVSPEEL 69

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            ++   +   +G+A+            +    L++ LD+V DP N+G ++R    F  + 
Sbjct: 70  QRLSTLKHPDEGVAI----FQQHERKEILQEGLILALDNVQDPGNLGTLIRLCDWFGIET 125

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++ +++     +  + +++ G+L  +    +  L   L             + + +  L 
Sbjct: 126 LLCSEQTVDCYNPKVVQASMGSLSRVEVHYLP-LEGFLATCA---LPVYVANLEGEN-LY 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNAAAVAL 273
                +   ++LG E  G+ P+    A     +   G     ++LNV+ A  + +
Sbjct: 181 TTTFPEDCVIVLGNEANGVSPEVAALANGAITIPRFGKLQQAESLNVAMAGGIII 235


>gi|193213878|ref|YP_001995077.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
           35110]
 gi|193087355|gb|ACF12630.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
           35110]
          Length = 179

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 69/166 (41%), Gaps = 2/166 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L        +   + ++  ++    N+G+I R+  A     +I T   +      +
Sbjct: 9   EMGRLEPDAFRESQKHPIYVMFQNIRSMWNVGSIFRTCDAARIQKVIITGYTATPPRPQI 68

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILG 234
            K A GA E + +  +++  +AL  +   G +   L  +++ +  ++    D  + L+LG
Sbjct: 69  DKVALGATETVDWEYVADPLEALADLKDQGVKIAALEITENARNYDELSAEDFPLCLVLG 128

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +  +       +   G   +LNV+ +A +A++     F
Sbjct: 129 NEVTGIDDEVLQECDFALEIPQYGTKHSLNVAVSAGIAIFEAVRQF 174


>gi|86741865|ref|YP_482265.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
 gi|86568727|gb|ABD12536.1| tRNA/rRNA methyltransferase [Frankia sp. CcI3]
          Length = 297

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 9/245 (3%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++     +     + GV  V AAL     ++ ++    +A  R +               
Sbjct: 40  KRPAARREQGRFLVEGVQAVGAALAVG--ELLEVFVGVSATPRHEELLRAVRVPVRVVTD 97

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
                  + +    QGL    A L +  L  +   +L+ V     DP N G ++RSA A 
Sbjct: 98  EAV--ASLSETVTPQGLVA-VAALPAHRLADLHAPRLVAVCIGAGDPGNAGTVIRSADAA 154

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             D ++ T            +S++G+  H+P I    L   L ++ + G + +  S  + 
Sbjct: 155 GADAVVFTGSGVDPFGGKCVRSSAGSHFHLPVIVEPALAGVLDRLRARGCRIVATSGAAD 214

Query: 218 KPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + ++  +     +   A + G E  GL   T   A ++  + + G  ++LN++ A+A+ L
Sbjct: 215 RDIDTAVAAGELDGPTAWLFGNEAHGLASATLAAADAVLRVPVYGQAESLNLAVASALCL 274

Query: 274 YITQN 278
           Y +  
Sbjct: 275 YASAR 279


>gi|255311209|ref|ZP_05353779.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276]
 gi|255317511|ref|ZP_05358757.1| 23S rRNA methyltransferase [Chlamydia trachomatis 6276s]
          Length = 269

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 14/256 (5%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF----QLLATKN-ALARLDWDANLPH 89
           +   K +         L G   +  AL +  R       +L+A K  AL R      +  
Sbjct: 14  ALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALDRELTSLGIEK 73

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPH 145
            +         ++K+  KE     +A+     LS      L     +   ++++    P 
Sbjct: 74  LY----CSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVEQAEKPG 129

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR A     DG I         +  + +S+ G +  +P    ++L + L  +H  
Sbjct: 130 NIGALLRIADGAGVDGAILCDPVVDLYNPNVIRSSLGTVFTMPV-WQASLKEVLDLVHQQ 188

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +Q    +  ++     +     + ++ G+E  GL P     +     L M G   +LN+
Sbjct: 189 EWQVFTTTPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGKADSLNL 248

Query: 266 SNAAAVALYITQNHFA 281
           S++ A   Y      +
Sbjct: 249 SSSVAAVAYEVVRQRS 264


>gi|332300622|ref|YP_004442543.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177685|gb|AEE13375.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 262

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 102/251 (40%), Gaps = 11/251 (4%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           H + K ++S  Q ++H  Q       G   +   L  P+ +   L+ T+  +  L     
Sbjct: 14  HAEVKLIKSL-QLAKHRKQSNLFIAEGEKLIGEML--PAYQCQLLVGTEELVKPLLGRCP 70

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 V    P+ I+++ G ++    LAL   P++     A++     ++LD V DP N
Sbjct: 71  ESIAEAVILPDPKQIERVSGLKSPRPLLALCEIPIIEAP-QALQQP--TLLLDDVQDPGN 127

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G +LR+        ++ T+  +   S  + ++  GAL  +   R ++ T  L  +    
Sbjct: 128 VGTLLRTCDWMGIRQVLCTEGCADVYSPKVLQATMGALARVQVYRYTDRTALLTMLTQTE 187

Query: 207 FQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKA 262
              IG   D   PL   +        L+LG EG G+        +    +  P     ++
Sbjct: 188 IPVIGTFIDGA-PLRTLRLAPEQPYILVLGNEGNGISSDLSALVSQRITIPSPVDSHCES 246

Query: 263 LNVSNAAAVAL 273
           LNV+ A A+ +
Sbjct: 247 LNVAVAGAIVM 257


>gi|27367704|ref|NP_763231.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
 gi|27359276|gb|AAO08221.1| RNA methyltransferase, TrmH family [Vibrio vulnificus CMCP6]
          Length = 244

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+ Q+ AT   L +   +      
Sbjct: 8   KLLRALGQK-KQRKALGLFLVQGEKNVLE-LANSTLKVKQVFATAEFLQQHAVELAGYEC 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V             A +  P ++  +   L++ LD V+DP N+G I
Sbjct: 66  IEASLDDLTKASTLVSNN-------AAIAVVEIPAIETPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIIASSDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEQANLPIY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   +       I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTTFSAQGI-LLMGSESHGVREQASKLVTDKITIPTFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|255535419|ref|YP_003095790.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
           3519-10]
 gi|255341615|gb|ACU07728.1| RNA methyltransferase, TrmH family [Flavobacteriaceae bacterium
           3519-10]
          Length = 242

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 92/247 (37%), Gaps = 21/247 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K +QS ++K +   +     + G  T+   +      I ++ +   A  +L        
Sbjct: 7   IKILQSLDKK-KFRQKYNLFLVEGNKTIKE-IPASRYVINEVFSVNPAELKL-------K 57

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
               + V    + +I       +        L +   + +    + ++LD + DP N+G 
Sbjct: 58  NVEAQAVSESELRRI-SFLQNPKDSVAVCQLLPT---EILPEPPVQLILDGIQDPGNLGT 113

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F    II ++      +  + +++ G+   +         D  + +      T
Sbjct: 114 IIRLADWFGIGQIICSEDTVDIYNPKVIQASMGSFLRVNVFY----ADIKEYLTDSPIAT 169

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVS 266
           IG   + +  L      ++  L+ G EG G+RP+     T    +   G     ++LNVS
Sbjct: 170 IGTDMEGEN-LYNFKFPERFNLVFGNEGNGIRPEIDNLLTDKITIPRFGKSKSTESLNVS 228

Query: 267 NAAAVAL 273
            A  + L
Sbjct: 229 MATGIIL 235


>gi|288957122|ref|YP_003447463.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909430|dbj|BAI70919.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 279

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 17/240 (7%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW--DANLPHPFPVKTVPPQT 100
           T   +   + G+  VSA   +   ++ +L   +     +     A      P + V    
Sbjct: 30  TESRKLFRVAGLAAVSALFTHEPERVERLFFDERLKPAVGAFCKAMAAARKPYRMVEADE 89

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLD---AVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           + K+ G   +H G+    AP   P  D   A R ++ L++LD V +PHN+GAILR+A  F
Sbjct: 90  LAKVAGT-VLHGGVVALMAPRTLPLFDTEAARRAAEPLLILDGVGNPHNLGAILRTAAFF 148

Query: 158 SCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               ++ +        S    + A G  E +   R   L   L+++ +   +  G + D 
Sbjct: 149 GLPRVLVSDHPGQALPSEAAYRVAEGGFEWVALERAPALPAVLKRLRASH-RLFGTALDQ 207

Query: 217 KKP---------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +P            +      A++LG E  G+ P T     ++  +   G +++LNV+ 
Sbjct: 208 SRPAVDAGALTGWRGKADTKPPAVVLGNEEDGIPPATLAACEAVLTIPGSGHVQSLNVAA 267


>gi|150005579|ref|YP_001300323.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
           8482]
 gi|149934003|gb|ABR40701.1| putative tRNA/rRNA methyltransferase [Bacteroides vulgatus ATCC
           8482]
          Length = 251

 Score =  150 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 100/256 (39%), Gaps = 18/256 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
            K ++S   K +   + E +F+  G   V   L +   K+  L+AT N L          
Sbjct: 7   IKYIRSLELKKK--RKEEQVFVAEGHKLVGDLLGHFPCKL--LIATSNWLKMNHSATANE 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +   ++   + LA+   P      + ++ S L + LD V DP N+G
Sbjct: 63  ----IIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIK-SSLCLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +   +   +    ++  GAL  +      +L   ++ +      
Sbjct: 118 TIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGALARVKVHYC-SLPQLIESLTD--IP 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
             G   +      + +    + +++G EGKG+ P+ ++      ++          ++LN
Sbjct: 175 VYGTFLNGNIIYTESLSAHGL-IVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSESLN 233

Query: 265 VSNAAAVALYITQNHF 280
           V+ A AV     +   
Sbjct: 234 VAIATAVVCSEFRRRL 249


>gi|260885962|ref|ZP_05897293.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
 gi|260851105|gb|EEX70974.1| RNA methylase, SpoU family [Prevotella tannerae ATCC 51259]
          Length = 179

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 3/175 (1%)

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +H+    E   L            L++VLD+V   HN+G++ R+A AF   G+       
Sbjct: 1   MHKLTVEEMNRLDVAAFKEAPKLPLVVVLDNVRSLHNVGSVFRTADAFRLSGVCLCGITG 60

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--N 226
                 + K+A GA + + +    +   A++ +   G+    +      +PL Q     +
Sbjct: 61  RPPMVEIHKTALGAEDSVDWEYFEDPLAAVEALRRRGYLIFAVEQVAGSRPLHQLRLSPD 120

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            K AL+LG E KG+     + + +   +   G   +LNVS +A + L+       
Sbjct: 121 QKYALVLGNEVKGVTQSVVDASDAAVEIPQYGTKHSLNVSVSAGIVLWEFAKQLG 175


>gi|255635868|gb|ACU18281.1| unknown [Glycine max]
          Length = 324

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 114/292 (39%), Gaps = 35/292 (11%)

Query: 16  KDSHYAKLRR----NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA------LNNPS 65
           + SH  K +     ++   K        S +     +  + G   +         + + S
Sbjct: 34  RTSHEEKPKPITSVSNPFVKHCLKLRNSSSYRRSHASAIVVGATPIREICRFRESIQDGS 93

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
             +  L+    A      D +      V +V  + +  +   E++   +AL   P    +
Sbjct: 94  VLMDCLILPDKADIPDGLDKSTASVVRVSSVVMRKLSGLQTTESLD-AIALMKIPASFFS 152

Query: 126 LDAVRNSQL--------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +D  + + L        ++VLD + DP N+G +LRSAVAF  DG+          +    
Sbjct: 153 VDDHQKNCLKWFPSVHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKAL 212

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIK 225
           +++ GA   +P +  S     L+ +    FQ   L+   +                  + 
Sbjct: 213 RASRGASFQLPVVSGSWNH--LESLKKE-FQMRFLAGHPEHEGLVKPVSSLSPSFCDSLS 269

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + L+LG+EG GL  K+ +T   +  + M G  ++LNVS A  + LY+ Q
Sbjct: 270 DTPLCLVLGSEGSGLSEKSLQTC-ELVSIAMTGEYESLNVSVAGGIFLYMLQ 320


>gi|332881584|ref|ZP_08449233.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680582|gb|EGJ53530.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 180

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 3/158 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                V    L++VLDHV   +N+G++ RS+ AF    +      +      + K+A GA
Sbjct: 19  EEFKTVEKLPLIVVLDHVRSLYNVGSVFRSSDAFRVASVYLCGITATPPQVEIHKTALGA 78

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGL 240
            + + ++      DA++ + + G++   +       + Q+    K  K A+ILG E KG+
Sbjct: 79  EDSVNWVYYERTQDAVEHLKAEGYEVWAVEQVEGSIMLQDFQPDKAKKYAIILGNEVKGV 138

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + +  +       +   G   +LNVS  A + ++    
Sbjct: 139 QQEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176


>gi|213962822|ref|ZP_03391082.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
 gi|213954479|gb|EEB65801.1| tRNA/rRNA methyltransferase [Capnocytophaga sputigena Capno]
          Length = 242

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 95/245 (38%), Gaps = 20/245 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+    Q+ ++ ++     + G  ++   L    R +  L+AT+         A +    
Sbjct: 8   KLIQKLQQKKYRNELNLFIVEGKKSIVEFLQAGYR-LELLIATE-------VFAEVLSHH 59

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           P+  V  + + K+   +   +GLA+            +    +++ LD+V DP N+G ++
Sbjct: 60  PITLVSKEELRKVSALKNPDEGLAI----FHQRKHKGILQEGIILALDNVQDPGNLGTLI 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F  + ++   +     +  + ++  G+L  +    + +L   L            
Sbjct: 116 RLCDWFGIETLLCNTQTVDCYNPKVVQATMGSLTRVAVHYV-DLAGFLATCS---LPVYV 171

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNA 268
           +  + +     E   D   LILG E  G+ P+ +  A     +         ++LNV+ A
Sbjct: 172 MDLEGENLYTTEFPED-CVLILGNEANGITPEVRSLANKAITIPRFSKHQQTESLNVAMA 230

Query: 269 AAVAL 273
            A+ L
Sbjct: 231 GAIVL 235


>gi|255536513|ref|YP_003096884.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
 gi|255342709|gb|ACU08822.1| RNA methylase, SpoU family [Flavobacteriaceae bacterium 3519-10]
          Length = 197

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 3/155 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            T    + + L +VLD+V   HN+GAI R+A AF  + ++            + K+A GA
Sbjct: 37  ETFKQTQKTGLTVVLDNVRSMHNVGAIFRTADAFLIEKVVLCGITPQPPHREIHKAALGA 96

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            E + +I +  ++ AL+ +    +  IG    S+  K       K+ K A++LG E  GL
Sbjct: 97  TESVEWIYVDTVSAALETLKKENYTVIGIEQTSNSQKIGDYHISKDQKYAVVLGNEVDGL 156

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                    +   +   G   +LNVS    + ++ 
Sbjct: 157 SEDALALYDAFLEIPQLGTKHSLNVSVCGGIVMWE 191


>gi|296082972|emb|CBI22273.3| unnamed protein product [Vitis vinifera]
          Length = 369

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 1/163 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            +E        +   R+  + +V++ + D  N+ A  RSA A     +      S     
Sbjct: 154 IMEVRKERFRNVVKSRSYSVCLVVEGLCDFGNVSAAFRSADALGFQSVHVVSCDSSKRYK 213

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALIL 233
                + GA + +     ++  +  + + S G++            +         A+++
Sbjct: 214 DNRHVSMGAEKWLDIELWNSTQECFEVLKSRGYRIATTHVGMDAVSIYDMDWTCPTAIVV 273

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G E +G+  +  E +     + M G++ + NVS AA + ++  
Sbjct: 274 GNENRGISDEALELSDLHCSIPMKGMVDSFNVSVAAGILMHHA 316


>gi|312129342|ref|YP_003996682.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM
           17132]
 gi|311905888|gb|ADQ16329.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM
           17132]
          Length = 241

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 105/244 (43%), Gaps = 18/244 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +QS + K ++ ++     + G   +S  L++   +I Q+  T+    +L    NL   
Sbjct: 8   KYIQSLHNK-KYRTEYGQFLVEGEKGISELLHSDY-QIIQIYITEEFAQKLPTHKNLM-- 63

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHVNDPHNIGA 149
                 P   I+ +   ++   G+A+    +     +   N    +++LD + DP N+G 
Sbjct: 64  ----VAPVTQIESVSTYKSNASGIAV----VQQKRFEVPENFQGRILILDGLRDPGNLGT 115

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  +  + +I ++      +  +  S  G+   +    + ++   ++K   +    
Sbjct: 116 IIRLADWYGIEHLICSEDTVEFYNPKVISSTMGSFTRVKPYYL-DIHSFMEK---YPHPI 171

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +G   +  + + +      +AL++G+E  G+  +T+   T   ++   G  ++LN + A 
Sbjct: 172 LGADLEG-QNVHKWDFPKNMALVIGSESHGISAETERQLTDKVNIPRIGKAESLNAAMAT 230

Query: 270 AVAL 273
            + L
Sbjct: 231 GIIL 234


>gi|237804750|ref|YP_002888904.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273050|emb|CAX09963.1| 23S rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 269

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 14/256 (5%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF----QLLATKN-ALARLDWDANLPH 89
           +   K +         L G   +  AL +  R       +L+A K  AL R      +  
Sbjct: 14  ALALKRQRARNSTYFLLEGFREIHRALISGYRCSHVFCGELIADKEIALDRELTSLGIEK 73

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT----LDAVRNSQLLMVLDHVNDPH 145
            +         ++K+  KE     +A+     LS      L     +   ++++    P 
Sbjct: 74  LY----CSKDILEKLSFKENPENFIAVFEKKELSCQEFLGLQRKNQAPFYLIVEQAEKPG 129

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA+LR A     DG+I         +  + +S+ G +  +P    ++L + L  +H  
Sbjct: 130 NIGALLRIADGAGVDGVILCDPVVDLYNPNVIRSSLGTVFTMPV-WQASLKEVLDLVHQQ 188

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +Q       ++     +     + ++ G+E  GL P     +     L M G   +LN+
Sbjct: 189 EWQVFTTIPSAQTFYFDQDFCQPMVVVFGSEKDGLSPDWLNGSFCNIALPMLGKADSLNL 248

Query: 266 SNAAAVALYITQNHFA 281
           S++ A   Y      +
Sbjct: 249 SSSVAAVAYEVVRQRS 264


>gi|265756534|ref|ZP_06090740.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233722|gb|EEZ19337.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 251

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 101/259 (38%), Gaps = 24/259 (9%)

Query: 30  YKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
            K ++S   K +   + E +F+  G   V   L     K+  L+AT N L        + 
Sbjct: 7   IKYIRSLELKKK--RKEEQVFVAEGHKLVGDLLGYFPCKL--LIATSNWLK-------IN 55

Query: 89  HPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           HP     +  V  + + +   ++   + LA+   P      + ++ S L + LD V DP 
Sbjct: 56  HPVTANEIIEVTQEELSRASLQKTPQEVLAVFVQPFYDLNPEVIK-SSLCLALDDVQDPG 114

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F  + I  +   +   +    ++  GAL  +      +L   ++ +   
Sbjct: 115 NLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGALARVKVHYC-SLPQLIESL--A 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IK 261
                G          + +    + +++G EGKG+ P+ ++      ++          +
Sbjct: 172 DIPVYGTFLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSE 230

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A AV     +   
Sbjct: 231 SLNVAIATAVVCSEFRRRL 249


>gi|225452930|ref|XP_002278944.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 372

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 1/163 (0%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            +E        +   R+  + +V++ + D  N+ A  RSA A     +      S     
Sbjct: 157 IMEVRKERFRNVVKSRSYSVCLVVEGLCDFGNVSAAFRSADALGFQSVHVVSCDSSKRYK 216

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALIL 233
                + GA + +     ++  +  + + S G++            +         A+++
Sbjct: 217 DNRHVSMGAEKWLDIELWNSTQECFEVLKSRGYRIATTHVGMDAVSIYDMDWTCPTAIVV 276

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           G E +G+  +  E +     + M G++ + NVS AA + ++  
Sbjct: 277 GNENRGISDEALELSDLHCSIPMKGMVDSFNVSVAAGILMHHA 319


>gi|319957276|ref|YP_004168539.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319419680|gb|ADV46790.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 260

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 5/219 (2%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L     +   LL T   L +            V     + +++IVG    H  +A    P
Sbjct: 42  LLGSGLEFKSLLCTPEYLEKERERIEAAGVPKVYLGSRELLERIVGHSIHHNVMAHLKRP 101

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P  +       +++L  +N+  N+GAI RSA A    G +              + +
Sbjct: 102 TNVPLEEL---PDRVVMLTRLNNLENVGAIARSAAALGVGGYVVPSSGPHPYGRRAIRVS 158

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIK-NDKIALILGAEGK 238
           +G +  +      ++   ++++   G+  +   ++    PL +      + ALILG E +
Sbjct: 159 TGHVTRLKVHCYEDILQTMERLRELGYTLLAAEATPEAVPLARFGPVPKRWALILGNEEE 218

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G+  +  E   ++  + M   IK+ NV+ A A+ +Y  +
Sbjct: 219 GVPEEVLEKCDAVLQIEMEPGIKSFNVATAGAIIMYRLR 257


>gi|330995662|ref|ZP_08319560.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
 gi|329574721|gb|EGG56282.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
          Length = 263

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 13/259 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA--RLDWDA 85
           ++  K+    ++ +   + +     G   V   L  P+     L A K  L   R   + 
Sbjct: 4   KNKIKLIRSLEQKKFRKEQQLFVAEGHKLVDDLL--PAFDCTFLAALKEWLDTRREVVET 61

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP-TLDAVRNSQLLMVLDHVNDP 144
                  ++ V  + + K    +   Q +        +    + +   QL + LD V DP
Sbjct: 62  LARKGCEIQEVSAEELQK-TSLQKNPQDVLAVFHQRQAEGAPEHILKDQLCLGLDGVQDP 120

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G I+R A  F  + I  +   +   +    ++  GA+  +    + +LTD L+    
Sbjct: 121 GNLGTIIRIADWFGIEHIFCSPDTADLYNPKTVQATMGAMARVCVHYL-SLTDLLRA-AE 178

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GII 260
                 G   D       E+ ++ + +++G EG G+            ++          
Sbjct: 179 TDTPVYGTFLDGNDMYGTELSSNGL-IVMGNEGNGISRDIASLINRKLYIPNYPLERNTS 237

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LNV+ A A+     +  
Sbjct: 238 ESLNVAVATAIVCAEFRRR 256


>gi|206895173|ref|YP_002247200.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737790|gb|ACI16868.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
           5265]
          Length = 238

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 18/234 (7%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP---HPFPVKTVPPQTI--DKIVG 106
           YG   +  AL +   K+ ++    + ++++    +      P P+  VP +     + VG
Sbjct: 9   YGFSPLEEALRSG--KVEKIWVRVDKMSKVKQLVDRLEKNRPIPLVAVPKEFFPEKEWVG 66

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                  L  E   L    L  + N  +++++D V D  N+GAI R++VA S   II   
Sbjct: 67  F------LPSEIDYLGWEELPEIGN--MVVIVDGVTDSTNLGAIFRASVALSSPNIILDL 118

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             + S +  + + + GA       R+ N+  A+ ++   GF  +GL +     +      
Sbjct: 119 HNTGSVTPKVVEISRGAALRARVWRL-NIKQAIPRLKENGFSVVGLEAHHGTKVYHLDLT 177

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            K+AL++G+E KG+R   +       ++      ++LNV  A ++ALY  +   
Sbjct: 178 GKVALVVGSEDKGIRTTVRTLCDHFGNIPT--DFESLNVHVALSIALYEAKRQR 229


>gi|332882239|ref|ZP_08449869.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679862|gb|EGJ52829.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 242

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 93/251 (37%), Gaps = 20/251 (7%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+       ++ ++     + G  +++  L         L+AT+       +  ++P   
Sbjct: 8   KLIQKLHHKKYRNELNLFIVEGKKSINEFLQAGYTP-QLLIATE------AFTTSVPQHL 60

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            +  V    + K+   +   +GLA+   P     L       +++ LD+V DP N+G I+
Sbjct: 61  -ITPVSKDELRKVSTLQNPDEGLAVFQQPKHKGIL----QEGVIVALDNVQDPGNLGTII 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F  + ++   +     +  + ++  G+L  +    +    D    + +       
Sbjct: 116 RLCDWFGVETLLCNTQTVDCYNPKVVQATMGSLTRVAVHYL----DLAAFLTTTALPVYT 171

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---MPGIIKALNVSNA 268
           +  + +  L          LILG E  G+  + +  +  +  +         ++LNV+ A
Sbjct: 172 MDLEGEN-LYTATFPKDCILILGNEANGISSEVRALSNEVITIPRFSQHQRTESLNVAMA 230

Query: 269 AAVALYITQNH 279
            A+ L     H
Sbjct: 231 GAIILSEVMGH 241


>gi|330467003|ref|YP_004404746.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328809974|gb|AEB44146.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 265

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 9/242 (3%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LDWDANLPHPFPVKTVPPQTI 101
                    G   V  AL   SR + +L  T  AL R      A      PV  V  + +
Sbjct: 23  EATGRFLAEGPQAVREAL-ARSRTVLELFGTPTALDRHADLAAAAAGADVPVSEVTDEAL 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
             +  +    QGL      L  P   A+ R  +L+ VL  + DP N G +LR+A A    
Sbjct: 82  AALA-ETVAPQGLVAVCQHLDVPLATALSRGPRLVGVLAGIRDPGNAGTVLRTADAAGAA 140

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
            ++         +    +S++G+L H+  +R  +    +    + G   +  +   +  L
Sbjct: 141 AVVFAGEAVDPYNGKCVRSSAGSLFHVDVVRERDPAAVVDAARAAGLVVLAATGYGEADL 200

Query: 221 EQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +            A + G+E  GL  +    A +   + + G  ++LN++ AAAV LY +
Sbjct: 201 DDLADAGRLAVPTAWLFGSEAHGLPDELIAAADARVRVPLHGRAESLNLAAAAAVCLYAS 260

Query: 277 QN 278
             
Sbjct: 261 AR 262


>gi|254245541|ref|ZP_04938862.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
           PC184]
 gi|124870317|gb|EAY62033.1| RNA methyltransferase TrmH, group 3 [Burkholderia cenocepacia
           PC184]
          Length = 106

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/101 (35%), Positives = 60/101 (59%)

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ASGA + +PYI ++NL  AL+++   G   IG S ++   L +   +  +AL++GAEG+G
Sbjct: 2   ASGAADTVPYITVTNLARALRELKEAGVWIIGTSDEAPATLYETKLDGPVALVMGAEGEG 61

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +R  T++T   +  + M G +++LNVS A+ V LY      
Sbjct: 62  MRRLTRDTCDEVMSIPMAGSVESLNVSVASGVCLYEAVRQR 102


>gi|310287628|ref|YP_003938886.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
 gi|309251564|gb|ADO53312.1| rRNA methyltransferase [Bifidobacterium bifidum S17]
          Length = 289

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 99/280 (35%), Gaps = 29/280 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK- 75
           DS      +  R  K     N+++R         + G  +V  A+      +  L     
Sbjct: 4   DSRMIDNMKADRVRKVADLANRRTRER--FGRFLIEGPQSVREAVTWMPDAVRDLYVQAV 61

Query: 76  ---------NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLS 123
                            + +  H   V       + +I       QG+A      A   +
Sbjct: 62  DGPDGPRIAGETLTSIVERSQEHRIYVHPASEAVMRRISPD---CQGIAAVGDADAVRAT 118

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                +     +     V DP N G ++R+A A  CD ++         +  + ++ +G+
Sbjct: 119 AQGTQLPEKPFVAAFWQVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGS 178

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKP-------LEQEIKNDKIALIL 233
           L HIP + +  + +          +T+      +D ++P        +Q++     A+I 
Sbjct: 179 LFHIPVMTMG-VDEFFGWAGEKVLRTVAADVYGTDGREPRELPEVLRDQDLSGVGKAVIF 237

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G E +GL P        +  + + G  ++LN++ +AA+ L
Sbjct: 238 GNEARGLEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 277


>gi|222628624|gb|EEE60756.1| hypothetical protein OsJ_14313 [Oryza sativa Japonica Group]
          Length = 783

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 13/202 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVP 97
            +   E  ++ GV+ V++++ N +  + ++L    A    L  ++ +A       V+ V 
Sbjct: 381 RSRSAEGQWIVGVNAVASSIENDAENVREVLVEAGAKNPRLTEIEENARR-KGIDVRKVN 439

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAI 150
            Q +D  VG    HQG+A   A   + + + +           LL+VLD V DPHN+GA 
Sbjct: 440 SQALDG-VGGSVRHQGVAARYAAARTYSENELEGLVTAAEGKALLLVLDEVQDPHNLGAC 498

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRSA A     +I  K  S + +A + K+++GA + IP + ++NL+  L+ +   G    
Sbjct: 499 LRSAAAAGATAVIIPKDKSATVNATVRKTSAGAADLIPVVAVTNLSRCLKDLQKQGVWIY 558

Query: 211 GLSSDSKKPLEQEIKNDKIALI 232
           GL+ ++   L Q      IALI
Sbjct: 559 GLAGEATASLYQLDLKGNIALI 580


>gi|240281983|gb|EER45486.1| RNA methyltransferase [Ajellomyces capsulatus H143]
          Length = 419

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 100/366 (27%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           ++ +E++    +     L R+     ++     +S   +   + F+YG   V AAL    
Sbjct: 16  ERNAERLAERSEQTEYTLERSPHTQPQVSITAPRSIPYTTAASEFVYGSSAVLAALRCGR 75

Query: 66  RKIFQLLATKNALARLDWDAN----------------LPHPFPVKTVP---PQTIDKIVG 106
           RK+++L    NA  ++                     L     VK V    P+ ++K+ G
Sbjct: 76  RKLYKLYI-HNAPDKVSLRLGRHSPRDPMLDTIIKFGLAAGVSVKQVAGNWPKLLEKMSG 134

Query: 107 KEAVHQGLALETAPLLSPTLDAV------------------------------------- 129
               H G  LE + L    ++ +                                     
Sbjct: 135 -GRPHNGCILEASQLPKLPVNGLLAVESPLDNHFNVSVCQQSVEEADVNGTSGRIPRSTY 193

Query: 130 ---------------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                                ++LD + D  N+GAI+RSA  F  D II + R S + SA
Sbjct: 194 RDGDSSSTGNDIKLAPRYPFALLLDGIRDEGNVGAIIRSAYYFGVDAIILSTRNSATISA 253

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGF---------------QTIGLSSD---S 216
           V  K+++GA E+IP +  +N T  L+  H  G+               Q++  S++   S
Sbjct: 254 VAVKASAGAAENIPILTTTNPTLFLKNTHMNGWRFFAAEAPAAAIASQQSLSTSAEQILS 313

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVSN 267
           ++ ++ ++      L+LG+E +GL+   ++ A  +  +              + +LNVS 
Sbjct: 314 RRDVKSKLNEAPCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVSV 373

Query: 268 AAAVAL 273
           A+A+  
Sbjct: 374 ASALLC 379


>gi|313140417|ref|ZP_07802610.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132927|gb|EFR50544.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 289

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 98/280 (35%), Gaps = 29/280 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DS      +  R  K     N+++R         + G  +V  A+      +  L     
Sbjct: 4   DSRMIDNMKADRVRKVADLANRRTRER--FGRFLIEGPQSVREAVTWMPDAVRDLYVQAA 61

Query: 77  ALARLDWDAN----------LPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLS 123
                   A             H   V       + +I       QG+A      A   +
Sbjct: 62  DGPDGPRIAGETLTSIVERSQEHRIYVHPASEAVMRRISPD---CQGIAAVGDADAVRAT 118

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                +     +     V DP N G ++R+A A  CD ++         +  + ++ +G+
Sbjct: 119 AQGTQLPEKPFVAAFWQVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGS 178

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKP-------LEQEIKNDKIALIL 233
           L HIP + +  + +          +T+      +D ++P        +Q++     A+I 
Sbjct: 179 LFHIPVMTMG-VDEFFGWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIF 237

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G E +GL P        +  + + G  ++LN++ +AA+ L
Sbjct: 238 GNEARGLEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 277


>gi|254495075|ref|ZP_05107999.1| SpoU rRNA methylase [Polaribacter sp. MED152]
 gi|85819425|gb|EAQ40582.1| SpoU rRNA methylase [Polaribacter sp. MED152]
          Length = 242

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 21/252 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K + S +QK ++  +       GV  V   L   S K+ QL A          D      
Sbjct: 9   KVITSLSQK-KYREKHGLFIAEGVKVVEELLQF-SLKVMQLFALDGYDLEGYEDV----- 61

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             V  +    + KI   ++ ++ + L       P    +++   ++ LD +NDP N+G I
Sbjct: 62  --VTRISEAELKKISKLKSPNKVVGL----FKIPDEQQLQHKGFILALDEINDPGNLGTI 115

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F    ++ +K      +  + +++ G+L  +    + +L   L    +      
Sbjct: 116 IRLCDWFGVQQLVCSKNTVDCYNQKVVQASMGSLTRVSIKYL-DLEAYLNSTKT---PIY 171

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267
                       ++  + I L++G E  G+    +    +   +   G     ++LNV+ 
Sbjct: 172 IADMQGSNVYSSQLPEEAI-LVMGNEANGISDAVRAIVQNKISIPRFGDTQETESLNVAT 230

Query: 268 AAAVALYITQNH 279
           A A+ L   +  
Sbjct: 231 ATAILLSEFKRR 242


>gi|189346347|ref|YP_001942876.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
 gi|189340494|gb|ACD89897.1| tRNA guanosine-2'-O-methyltransferase [Chlorobium limicola DSM 245]
          Length = 219

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +V+D+VN  HN+ A++RS  A     I    R     +     +A+G+ + +  
Sbjct: 17  RQTSLTVVMDNVNKSHNLAALVRSCDAAGIHEIHAVSRRKHIFTR--HNAAAGSSKWVNI 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++    +++   G Q +  +S +      +       ALILGAE  G+       A
Sbjct: 75  NLYHDIESVYRRLRDDGMQVLAAASTEKSVDFREIDYTLPTALILGAEWDGISEDAISGA 134

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M G++++LNVS A AV +Y  Q   
Sbjct: 135 DRCIGVPMFGMVESLNVSVAGAVIIYEAQRQR 166


>gi|269955140|ref|YP_003324929.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303821|gb|ACZ29371.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 272

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 99/246 (40%), Gaps = 12/246 (4%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K+ + +  ++++++        S+  +  + GV  V+ A+ +  +        ++     
Sbjct: 4   KISKRNARFQELEALLTNRSKRSRSGHFLVQGVRPVTLAVEHGWQ--VDAFCYEDGRRLS 61

Query: 82  DWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMV 137
           DW   L H        +    + ++  K      L    + +    LD V      L +V
Sbjct: 62  DWARGLLHRTGPEHYALSADLLAELAEKPEGEAELVAVVS-VPDDDLDRVPVPADFLGVV 120

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           LD    P N+G+I+RSA AF   G+I T   +        ++ +G+L  +P +R  +  +
Sbjct: 121 LDRPTQPGNVGSIIRSADAFGAHGVIVTGHGADPYDPRAVRATTGSLFAVPVVRAPSHRE 180

Query: 198 ALQKMHSWG-----FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            L ++ +W         +    D    +        + L++G E  GL    +E+A ++A
Sbjct: 181 VLDQVAAWRAAGTPVTVVATDEDGDVDIAGVDLTGPVLLLVGNETAGLTRAWRESADAVA 240

Query: 253 HLHMPG 258
            + M G
Sbjct: 241 SIPMVG 246


>gi|269214336|ref|ZP_06158510.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
 gi|269210033|gb|EEZ76488.1| RNA methyltransferase, TrmH family [Neisseria lactamica ATCC 23970]
          Length = 178

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 1/158 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P   A+ +    +VLD V DP N+G +LRSA A     ++  K  + + S  + ++  GA
Sbjct: 20  PDAGALPDKGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVVLGKGCADAWSPKVLRAGMGA 79

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    ++L   L +     F T  L  + +  L  E   +  A + G EG G+   
Sbjct: 80  HFLSEIYPQADLEIWLARYEDRVFAT-ALREEKQAVLYNEDLREPTAWVFGNEGAGVGKA 138

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + A     + M    ++LNV+ AA + L+      A
Sbjct: 139 VLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 176


>gi|154488654|ref|ZP_02029503.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
           L2-32]
 gi|154082791|gb|EDN81836.1| hypothetical protein BIFADO_01961 [Bifidobacterium adolescentis
           L2-32]
          Length = 290

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 92/281 (32%), Gaps = 30/281 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK- 75
            S      R  R  +  +  ++K R  S      + G  +V   L+     +  L     
Sbjct: 4   KSEVIANPRAERVRRVSELADRKGRKRS--GRFMVEGPQSVRELLSWHPDIVEDLYVEVV 61

Query: 76  NALARLDWD---------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLS 123
           +A     +            +     V  V    +  +       QG+       A L S
Sbjct: 62  SAEPDAAFITPTVAQMAGKAMQTGAYVHKVTHAVMQHMSSDA---QGVLAVADMRAFLDS 118

Query: 124 PTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
             +D       ++     V DP N G ++RSA A  C G++         +  + +S +G
Sbjct: 119 AVIDGDFDERTMVAAFWQVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAG 178

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----------LI 232
           +L H+P + +    +        G                E   D +A          ++
Sbjct: 179 SLFHLPVVSMG-TDEYFDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVL 237

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G E +GL     E    +  + + G  ++LN+  +AAV L
Sbjct: 238 FGNEARGLTQDVLERVDRIVSIPIYGKAESLNLGTSAAVML 278


>gi|212715739|ref|ZP_03323867.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661106|gb|EEB21681.1| hypothetical protein BIFCAT_00639 [Bifidobacterium catenulatum DSM
           16992]
          Length = 290

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 94/281 (33%), Gaps = 30/281 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
            S      ++ R  +  +  ++K R  S      + G  +V   L      +  L     
Sbjct: 4   KSEVIANPKSERVRRVSELADRKGRKRS--GRFMVEGPQSVRELLTYHPGLVEDLYVEVE 61

Query: 77  ALARLDWDA----------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL---- 122
           +       A           +     V  V    + ++       QG+            
Sbjct: 62  SAQPDASFATPVVAQMAGKAMQSGVYVHKVTHAVMHRMSADA---QGVLAVADMQAFLDS 118

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           S  LD      ++     V DP N G ++RSA A  C  ++         +  + +S +G
Sbjct: 119 SAVLDDFDGHAMVAAFWQVRDPGNAGTVIRSADAAGCSAVVLVDDCVDMFNPKVVRSTAG 178

Query: 183 ALEHIPYIRISN-----LTDALQKMHSWGFQTIGLSSDSKKPLEQEI-----KNDKIALI 232
           +L H+P + +         D   ++  +     G  S   + L   I          A++
Sbjct: 179 SLFHLPILTMGTDDFFAWCDT-HELAVYAADVYGTDSRQPESLTDVIAMPETLAGAKAVL 237

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G E +GL  +  E    +  + + G  ++LN+  +++V L
Sbjct: 238 FGNEARGLTKEVLERTDRIVSIPLYGKAESLNLGTSSSVML 278


>gi|193212910|ref|YP_001998863.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
 gi|193086387|gb|ACF11663.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobaculum parvum NCIB 8327]
          Length = 178

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 2/166 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L      A     + ++L ++    N+G++ R+A A   D I+ T   +      +
Sbjct: 11  EMGRLTPEAYSATERHPVTLMLHNIRSMWNVGSMFRTADAAGIDEIVITGYTATPPRKEI 70

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILG 234
            K+A GA   +P+   ++  +AL  +   G +  GL  +++ +       +D  + L++G
Sbjct: 71  DKTALGAQLTVPWRHFADPLEALSVLKGEGCKVFGLEIAENSRSYSSLQPDDYPLVLLVG 130

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +       +  +   G   +LNVS AA VAL+     F
Sbjct: 131 NEVDGIGDELLARCDGVLEIPQYGTKHSLNVSVAAGVALFECVRLF 176


>gi|119025947|ref|YP_909792.1| rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765531|dbj|BAF39710.1| possible rRNA methylase [Bifidobacterium adolescentis ATCC 15703]
          Length = 290

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 92/281 (32%), Gaps = 30/281 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK- 75
            S      R  R  +  +  ++K R  S      + G  +V   L+     +  L     
Sbjct: 4   KSEVIANPRAERVRRVSELADRKGRKRS--GRFMVEGPQSVRELLSWHPDIVEDLYVEVV 61

Query: 76  NALARLDWD---------ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLS 123
           +A     +            +     V  V    +  +       QG+       A L S
Sbjct: 62  SAEPDAAFITPTVAQMAGKAMQAGAYVHKVTHAVMQHMSSDA---QGVLAVADMRAFLDS 118

Query: 124 PTLD-AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
             +D       ++     V DP N G ++RSA A  C G++         +  + +S +G
Sbjct: 119 AVIDGDFDERTMVAAFWQVRDPGNAGTVIRSADAAGCAGVVLVDDCVDIFNPKVIRSTAG 178

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----------LI 232
           +L H+P + +    +        G                E   D +A          ++
Sbjct: 179 SLFHLPVVSMG-TDEYFDWCAERGLAVYAADVYGTDARPPEPLTDVLAVPQSLAQAKTVL 237

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G E +GL     E    +  + + G  ++LN+  +AAV L
Sbjct: 238 FGNEARGLTQDVLERVDRIVSIPIYGKAESLNLGTSAAVML 278


>gi|161761287|ref|YP_156756.2| tRNA guanosine-2'-O-methyltransferase [Idiomarina loihiensis L2TR]
          Length = 226

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 9/155 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186
           R   L +V+++V+  HN+ A++RSA A         + ++   +        +A G+   
Sbjct: 16  RQPDLTVVMENVHKNHNLSAVVRSADAIGVH-----EMHAIWLTKKARLSGGTALGSQNW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + +AL+     G Q +    S+      +       A++LG E  G+  +  
Sbjct: 71  VKIHNHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTDEAL 130

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A AV LY  Q   
Sbjct: 131 DIADYHVMIPMVGMVQSLNVSVAGAVMLYEAQRQR 165


>gi|71894580|ref|YP_278688.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 237

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 117/249 (46%), Gaps = 30/249 (12%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++YKK+Q+     ++  + +   L G + +S A     +K   ++  +++   +  D+  
Sbjct: 10  KEYKKLQN----KKYRKEKQQFLLEGFNLISEA-----KKYTNVITLESSKDLIYKDSI- 59

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                   V  + I  +  +    Q +    A  L PT    +     ++L++V+DP NI
Sbjct: 60  -------RVDYEIIKHL-SETKSPQSII-GVASFLKPTNKINK----TVILNNVSDPGNI 106

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHSWG 206
           G ILRSA+AF  D +I         +  + +S+ GA+   +  I  SNL + L+ + +  
Sbjct: 107 GTILRSALAFEFDTVIIENI--DIYNPKIIRSSLGAIFSNLNIISTSNLEEILKDLKAQN 164

Query: 207 FQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           F+      D  +KK  E    N+KIA+++G E  G+     + A+   ++ +    ++LN
Sbjct: 165 FKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASEKVYIPIA--FESLN 222

Query: 265 VSNAAAVAL 273
           V++A A+ L
Sbjct: 223 VASALAIIL 231


>gi|297522035|ref|ZP_06940421.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           OP50]
          Length = 103

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 54/103 (52%)

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A GA E +P IR++NL   ++ +       +G + ++   L Q     ++AL++GAEG+
Sbjct: 1   VACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGE 60

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+R  T+E    +  + M G + +LNVS A  + L+      +
Sbjct: 61  GMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS 103


>gi|332764147|gb|EGJ94384.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
          Length = 206

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRISNLT 196
           ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   +       + 
Sbjct: 1   MEQVHKPHNVSAIIRTADAVGVHEV---HAVWPGSRMRTMASAAAGSNSWVQVKTHRTIG 57

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           DA+  +   G Q +    SD+     +        +++G E  G+  +    A     + 
Sbjct: 58  DAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIL 117

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M G++++LNVS A+A+ LY  Q   
Sbjct: 118 MIGMVQSLNVSVASALILYEAQRQR 142


>gi|237710454|ref|ZP_04540935.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455176|gb|EEO60897.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 258

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 98/268 (36%), Gaps = 24/268 (8%)

Query: 23  LRRNHRDYKKMQS---FNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           L RN+   +K      F    +   + +     G   V   L         L+AT N L 
Sbjct: 3   LNRNYHAEQKQNKIYPFVGTEKKRKEEQVFVAEGHKLVGDLL--GYFPCKLLIATSNWLK 60

Query: 80  RLDWDANLPHPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
                  + HP     +  V  + + +   ++   + LA+   P      + ++ S L +
Sbjct: 61  -------INHPVTANEIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIK-SSLCL 112

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            LD V DP N+G I+R A  F  + I  +   +   +    ++  GAL  +      +L 
Sbjct: 113 ALDDVQDPGNLGTIIRLADWFGIEHIFCSAGTADVYNPKTVQATMGALARVKVHYC-SLP 171

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
             ++ +        G          + +    + +++G EGKG+ P+ ++      ++  
Sbjct: 172 QLIESL--ADIPVYGTFLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEKLINKKLYIPN 228

Query: 257 PGI----IKALNVSNAAAVALYITQNHF 280
                   ++LNV+ A AV     +   
Sbjct: 229 YPQERETSESLNVAIATAVVCSEFRRRL 256


>gi|255584325|ref|XP_002532898.1| rRNA methylase, putative [Ricinus communis]
 gi|223527332|gb|EEF29478.1| rRNA methylase, putative [Ricinus communis]
          Length = 334

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 60/148 (40%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  + +V++ ++D  N+ A  RSA A     +      S          + GA + +  
Sbjct: 134 RSYSVCLVVEGLSDFGNVSAAFRSADALGFQSVHVVSCDSSKRYRDNRHVSMGAEKWLDI 193

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  +  + + S G++            +     +   A+++G E +G+  +  E +
Sbjct: 194 ELWDSTQECFEVLKSRGYRIATTHVGMDAVSIYDMDWSCPTAIVVGNENRGISDEALELS 253

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 254 DLHCSIPMKGMVDSFNVSVAAGILMHQA 281


>gi|149195670|ref|ZP_01872727.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
 gi|149141132|gb|EDM29528.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
          Length = 262

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 5/220 (2%)

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            V+  +++  R +  +LAT++  A                     + K+ G    H  + 
Sbjct: 39  VVNLLIDSGIR-VKSILATEDYYAEEQSRLEALQKVDFYVADKTMMKKVTGYNIHHGVMM 97

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
               P              +++L  ++   N+G I RSA A      +  ++        
Sbjct: 98  HAFRPEEYKINQLDEQ---IIMLAELSKNDNVGTIARSAAALGVKSYLVPRQGPHPYGRR 154

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILG 234
             + + G +  +      +L + + ++ S G+Q I   +S     L      +K  L++G
Sbjct: 155 ALRVSMGYISRLKVSVYDDLLNTISELQSLGYQVIAAEASQHAIDLSTLEVPNKWVLLMG 214

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            EG GL  K QE    +  + M   IK+ NV  AAA+ +Y
Sbjct: 215 HEGLGLSQKVQEACDCVVKIEMDEDIKSFNVGVAAAILMY 254


>gi|254884507|ref|ZP_05257217.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640801|ref|ZP_07995514.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|254837300|gb|EET17609.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387613|gb|EFV68479.1| tRNA/rRNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 251

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 102/256 (39%), Gaps = 18/256 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
            K ++S   K +   + E +F+  G   V   L +   K+  L+AT N L R++  A   
Sbjct: 7   IKYIRSLELKKK--RKEEQVFVAEGHKLVGDLLGHFPCKL--LIATSNWL-RMNHSATAN 61

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V  + + +   ++   + LA+   P      + ++ S L + LD V DP N+G
Sbjct: 62  EII---EVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIK-SSLCLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +   +   +    ++  GAL  +      +L   ++ +      
Sbjct: 118 TIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGALARVKVHYC-SLPQLIESLTD--IP 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
             G   +      + +    + +++G EGKG+ P+ +       ++          ++LN
Sbjct: 175 VYGTFLNGNIIYAESLSAHGL-IVMGNEGKGVSPEVERLINKKLYIPNYPQERETSESLN 233

Query: 265 VSNAAAVALYITQNHF 280
           V+ A AV     +   
Sbjct: 234 VAIATAVVCSEFRRRL 249


>gi|302346096|ref|YP_003814449.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
 gi|302149891|gb|ADK96153.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
          Length = 198

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 17/182 (9%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L            L++VLD V   HN+G++ RSA AF  + +      +   +A 
Sbjct: 14  IEMNRLSLEEFKEADKLPLIVVLDDVRSLHNVGSVFRSADAFRVEAVYLCGITATPPNAE 73

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKI----- 229
           + K+A G  + + +       DA++++H  G     +   +    L+     +       
Sbjct: 74  IHKTALGGEDSVDWRYFERTEDAIEELHRQGVFVYSVEQVEGSTKLQDLNTQNPTNHQHP 133

Query: 230 -----------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                      A++LG E KG++    + +     +   G   +LNVS    + ++    
Sbjct: 134 TPNTQHPSPHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIWEFAR 193

Query: 279 HF 280
             
Sbjct: 194 QL 195


>gi|282877059|ref|ZP_06285902.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
 gi|281300830|gb|EFA93156.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
          Length = 288

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 105/270 (38%), Gaps = 15/270 (5%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
            H    R   +   K  +  Q  +           G   V   L++   +   ++AT+  
Sbjct: 22  QHIKTKRMISKAKLKYINALQTKKGRLAHGTFVAEGPKVVHDLLSS--FQPELIVATEQW 79

Query: 78  LARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
           L R + +    +       +  V P  + KI   +   + LA+     +   +D     +
Sbjct: 80  LERHEDEILKGNQGDRRPQIIAVSPDELQKISLLQHPQEVLAVFEQRHMPAHID--PTHE 137

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++ LD + DP N+G I+R A  F    +I ++  +   +  + ++  G++ H+    + 
Sbjct: 138 LVLALDGIQDPGNLGTIIRIADWFGIRNVICSEDTADVYNPKVVQATMGSIAHVDVTYL- 196

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           NL D +  + +      G   D +   +Q +    I +I+G EG G+    +        
Sbjct: 197 NLCDFVDALPAST-PVYGTLLDGEDIYQQTLTATGI-IIMGNEGNGISKDLRARINHALL 254

Query: 254 LH----MPGIIKALNVSNAAAVALYITQNH 279
           +     +P   ++LNV+ A A+A    +  
Sbjct: 255 IPNFSTLPNKAESLNVAIATAIACSEFKRR 284


>gi|293402298|ref|ZP_06646436.1| RNA 2'-O ribose methyltransferase substrate binding subfamily
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304405|gb|EFE45656.1| RNA 2'-O ribose methyltransferase substrate binding subfamily
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 242

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 91/246 (36%), Gaps = 21/246 (8%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103
           E   + G  +V AAL    RK+ ++L     K+                +  V  + ID 
Sbjct: 2   ETCIVEGNISVKAALLGKKRKVHKILVDAKKKDKDTAFILHKAKEAQVDIAYVKREEIDA 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +      H G+           L+ + N +   L +++ V DP N G +LR+  A  CDG
Sbjct: 62  LA-TGKTHGGIIAYCGQRKYQNLEELVNKKQVFLALIEGVEDPFNFGYVLRTLYAAGCDG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++   R   + + V+ ++++GA E++  I   ++ D L  +H      +         L 
Sbjct: 121 VLVPLRNWTTAADVVTRASAGASEYMNIIIADDMEDTLTYLHQNDITLLCAQRKDAISLY 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--------MPGIIKALNVSNAAAVAL 273
                ++I L +G E +GL       +    ++         M         + + A+  
Sbjct: 181 SYTFPERICLAIGGEMRGLSKAVMTHSDQNLYIPYRSDFRNAMT-------AAASTAIFA 233

Query: 274 YITQNH 279
           +     
Sbjct: 234 FEVVRQ 239


>gi|188993889|ref|YP_001928141.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188593569|dbj|BAG32544.1| probable SpoU rRNA methylase family protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 180

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 75/162 (46%), Gaps = 3/162 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L +          + ++LD +   +N+G++ R+A AF  +G+      +      
Sbjct: 7   IEIQRLKTEEYHESPKLPIRIILDDIRSMNNVGSVFRTADAFRLEGLCLCGITARPPHPD 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALI 232
           + K+A GA + + +   S++ DA++++ + G+    +  ++    LE    +   + ALI
Sbjct: 67  IHKTALGAEDSVKWEYFSSVVDAIEELKAKGYSICAIEQAEGSLSLENFSPSKGTRYALI 126

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G E KG+R +  +       +   G   +LNVS  A + ++
Sbjct: 127 FGNEVKGVRQEAIDLCDLCLEIPQFGTKHSLNVSVTAGIVIW 168


>gi|163803682|ref|ZP_02197544.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159172521|gb|EDP57384.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 244

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT   L +   + N    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLTVKQIFATAEFLGQHSKELNGFES 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V             A +  P L       L++ LD V+DP N+G I
Sbjct: 66  VEASLDDLTKASTLVSNN-------AAIAVVEIPELKVPEAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIQHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEDANLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + E   D I L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTEFSADGI-LLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|116179962|ref|XP_001219830.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
 gi|88184906|gb|EAQ92374.1| hypothetical protein CHGG_00609 [Chaetomium globosum CBS 148.51]
          Length = 647

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 58/232 (25%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVR---------------------------- 130
           + +DK+      H G  LE +PL  P L A+                             
Sbjct: 385 RLLDKMASSR-PHNGFVLEASPLPQPPLTALAPVPEDYASNPRCAITLGHQSAEEAAING 443

Query: 131 -----------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                      +  L+++LD + DP N+GAILR+A       +  T+  S   + V  K+
Sbjct: 444 HPTSIPTLSPTHKPLVLILDQILDPGNLGAILRTASFLGATAVGITRHGSAPLTPVALKA 503

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS--------------KKPLEQEIK 225
           +SGA E +    +S+L + L    + G+      ++                      +K
Sbjct: 504 SSGAAESLSLFSVSSLPEFLNASRANGWAVYAAVAEGPSSERRQRRHVDVRDVTETDPLK 563

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLH---MPG-IIKALNVSNAAAVAL 273
            +   L++G EG+GL     + A    ++    MPG  + +LNVS A  +  
Sbjct: 564 REPCVLLVGNEGEGLSRLVVKKADYEVNVPNLAMPGSGVDSLNVSVAVGLLC 615


>gi|288800355|ref|ZP_06405813.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332568|gb|EFC71048.1| RNA methylase, SpoU family [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 176

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 3/169 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            LE   L      A R   L++VLD+V   HN+G++ RS  AF  + +      +   SA
Sbjct: 6   VLEMNRLTVEEFKAARKLPLVVVLDNVRSLHNVGSVFRSCDAFRIEAVYLCGITATPPSA 65

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIAL 231
            + K+A GA + + +    +  DA++++    +    +   +  + + +   +   + A+
Sbjct: 66  EIHKTALGAEDSVSWKYYKSTLDAVEELKQQDYFVYSIEQVEGSQNMAKINLDHSKRYAV 125

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +LG E KG++ +    + S   +   G   +LNVS  A + ++      
Sbjct: 126 VLGNEVKGVQQEVVNASDSCLEIPQLGTKHSLNVSVTAGIVVWEFAKQL 174


>gi|196006305|ref|XP_002113019.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
 gi|190585060|gb|EDV25129.1| hypothetical protein TRIADDRAFT_56739 [Trichoplax adhaerens]
          Length = 246

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGA 149
           P+K       +    KE + +     T   L    +AV+N    + +VL+ + +  N  A
Sbjct: 25  PIKEFGTLANNASYNKELLQKLTCAFTKERLDKMTNAVKNRTRSIAVVLEGITNEGNEQA 84

Query: 150 ILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           I R+  A         +  SP        ++ +GA++ I      +  + + ++ S G++
Sbjct: 85  IYRTMDALGFQ--TAHRIPSPLYRLKTCGRTDAGAMKWIDIESWKSTEECISQLKSCGYK 142

Query: 209 TIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +  SS++K K L+    ++K A++LG+E +G+  +      ++  + M G +++ NVS 
Sbjct: 143 ILATSSENKTKTLDSFDFSNKTAVVLGSEQEGISKEAMNLVDNVFRISMVGFVESYNVSV 202

Query: 268 AAAVALY-ITQNHFAK 282
           AAA+ LY I Q+   K
Sbjct: 203 AAAIILYHIYQDRIRK 218


>gi|238882262|gb|EEQ45900.1| hypothetical protein CAWG_04239 [Candida albicans WO-1]
          Length = 470

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 102/311 (32%), Gaps = 86/311 (27%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            +++G H V A L    R+I  L    N    +   A   +    K +  +    I+ K 
Sbjct: 155 DYVFGTHPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEKYGIVPKRLKDKNALNILCKN 214

Query: 109 AVHQGLALETAPLLSPTLDAVRNS------------------------------------ 132
            VH G+ L+T  L  P +  V ++                                    
Sbjct: 215 GVHNGVVLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDDDGEVKVKTKKVIRDDD 274

Query: 133 --------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                    L + LD + DP N+G+ILRSA  F  D I+     +     V  K+++GAL
Sbjct: 275 IEQIEELYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGAL 334

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK--------------------------- 217
           + I   +  +    +  +   G+  I    D +                           
Sbjct: 335 DLIDIYQTGSSLKFIDSVRQNGWHVISTVVDQQVVQSLKKLPMLRMMSRMMPMSMLMLML 394

Query: 218 -----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGI---IKA 262
                      + L   +K   + LI+G+EG G+R   +  +  +  +  +      + +
Sbjct: 395 INHIKNKFIELQDLRTILKKTPVMLIIGSEGSGVRTNMKIRSDYLVGIPKIRRNDNIVDS 454

Query: 263 LNVSNAAAVAL 273
           LN   A  V L
Sbjct: 455 LNAGVATGVIL 465


>gi|153824637|ref|ZP_01977304.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|153828259|ref|ZP_01980926.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|148876213|gb|EDL74348.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|149741855|gb|EDM55884.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 257

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 21  KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEH---AQALAGF 76

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 77  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 132

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 133 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 188

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 189 AFLEGVSVHQTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 247

Query: 272 AL 273
            L
Sbjct: 248 IL 249


>gi|296284434|ref|ZP_06862432.1| tRNA/rRNA methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 267

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 7/243 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLD 82
           ++   K ++S  +K +H  +       G+  ++ A  +       ++A+K     L    
Sbjct: 10  SNPTIKALRSLREK-KHRQRERRFLAEGLRLLTDARESGRVPEVLVMASKRDPHPLIDAL 68

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHV 141
             A       V    P  + KI GK+   Q +A   A   +      RN + + +V   +
Sbjct: 69  EHAVEAAGGDVIETTPDILSKITGKD-NPQAVAGAFAEWDTSLDRIDRNAAPIWLVAQAL 127

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LR+A A    G+I     +        +++ GA+      R     + L  
Sbjct: 128 RDPGNLGTMLRTADAVGAGGLILIDDCADPFGVEAVRASMGAIFTQNLARAR-WEEFLPW 186

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +     Q +  S     P           +++G E +GL    +        + M G   
Sbjct: 187 LRQGPGQLVAASLREAVPYRGAPYASPCFVMVGNESQGLPEAYETACDLRVTMPMRGRAD 246

Query: 262 ALN 264
           +LN
Sbjct: 247 SLN 249


>gi|224024447|ref|ZP_03642813.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
           18228]
 gi|224017669|gb|EEF75681.1| hypothetical protein BACCOPRO_01172 [Bacteroides coprophilus DSM
           18228]
          Length = 250

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 15/244 (6%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +   + E +F+  G   V   L         LL T   L                 V  +
Sbjct: 16  KKYRKEEQVFIAEGHKLVGDLL--GHFPCRLLLGTDKWLNEHPLIEAEETI----EVSRE 69

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    +   + LAL   P        +    L + LD V DP N+G I+R A  F  
Sbjct: 70  ELSRASLLKTPQEVLALFEIPHYEWDP-KIAERSLCLALDDVQDPGNLGTIIRIADWFGI 128

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I  +     + +    ++  GAL  +      +L   LQ          G   D +  
Sbjct: 129 HHIFCSNGCVDAFNPKTVQATMGALARVQLHYC-DLPAFLQA-QPKEVPVFGTFLDGENL 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GII--KALNVSNAAAVALYI 275
             QE+  + I +I+G EG G+ P+  ++      +     G    ++LNV+ A A+    
Sbjct: 187 YAQELSTNGI-IIMGNEGNGISPQVAQSVNRRLLIPNYPQGQTTSESLNVAVATAIVCAE 245

Query: 276 TQNH 279
            +  
Sbjct: 246 FRRR 249


>gi|221632050|ref|YP_002521271.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
           5159]
 gi|221155367|gb|ACM04494.1| tRNA guanosine-2'-O-methyltransferase [Thermomicrobium roseum DSM
           5159]
          Length = 217

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA-KSASGALEH 186
           A R   L +VL++V+DPHN+ A+LRS  A     +     Y+  E   L+   +  AL+ 
Sbjct: 18  ARRQPDLTVVLENVHDPHNVSAVLRSCDAVGLLRVHLV--YTLEEFPELSENVSGSALKW 75

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGL---SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +   ++    + + S GF               L        +AL+ G E +G+  +
Sbjct: 76  LELVFHPSIEACYRTLRSQGFTIYTTYLGDPARSVDLYDLDLTKPVALVFGNEQRGVSDE 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
               A     + M G++++LN+S A AV+LY    Q   A
Sbjct: 136 AVAGADGNFVIPMMGMVRSLNISVACAVSLYEALRQRRLA 175


>gi|330997272|ref|ZP_08321125.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
 gi|329571067|gb|EGG52774.1| RNA methyltransferase, TrmH family [Paraprevotella xylaniphila YIT
           11841]
          Length = 180

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +          L++VLDHV   +N+G++ RS+ AF  + +      +      + K+A G
Sbjct: 18  AEEFKTAEKLPLIVVLDHVRSLYNVGSVFRSSDAFRVESVYLCGITATPPQVEIHKTALG 77

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKG 239
           A + + ++      DA++ + + G++   +       + Q+    K  K A+ILG E KG
Sbjct: 78  AEDSVDWVYYERTQDAVEHLKAEGYEVWAVEQVEGSVMLQDFRPDKAKKYAIILGNEVKG 137

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           ++ +  +       +   G   +LNVS  A + ++    
Sbjct: 138 VQQEVVDQCDGCIEIPQFGTKHSLNVSVTAGILVWEFAR 176


>gi|144575178|gb|AAZ43977.2| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 239

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 116/249 (46%), Gaps = 30/249 (12%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++YKK+Q+     ++  + +   L G + +S A      K +  + T  +   L +  ++
Sbjct: 12  KEYKKLQN----KKYRKEKQQFLLEGFNLISEA------KKYTNVITLESSKDLIYKDSI 61

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                   V  + I  +  +    Q +    A  L PT    +     ++L++V+DP NI
Sbjct: 62  -------RVDYEIIKHL-SETKSPQSII-GVASFLKPTNKINK----TVILNNVSDPGNI 108

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHSWG 206
           G ILRSA+AF  D +I         +  + +S+ GA+   +  I  SNL + L+ + +  
Sbjct: 109 GTILRSALAFEFDTVIIENI--DIYNPKIIRSSLGAIFSNLNIISTSNLEEILKDLKAQN 166

Query: 207 FQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           F+      D  +KK  E    N+KIA+++G E  G+     + A+   ++ +    ++LN
Sbjct: 167 FKLYYTLLDVNAKKLNEVSFDNEKIAVVVGNEANGIDKNLIKYASEKVYIPIA--FESLN 224

Query: 265 VSNAAAVAL 273
           V++A A+ L
Sbjct: 225 VASALAIIL 233


>gi|315224226|ref|ZP_07866066.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
 gi|314945959|gb|EFS97968.1| SpoU family RNA methylase [Capnocytophaga ochracea F0287]
          Length = 180

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 3/165 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L          + L+++LD+V   +NIG++ R+  AF  + I      +   +  + K+A
Sbjct: 12  LDIEQFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTA 71

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEG 237
            GA + + +  + N   A++K+   G   I +  +++   L     N   K A+I G E 
Sbjct: 72  LGATDSVAWEYVENTLSAVEKLKEQGVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEV 131

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           KG+  +    +  +  +   G   +LN+S +A +A++       K
Sbjct: 132 KGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELAMKLRK 176


>gi|325282387|ref|YP_004254928.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
           MRP]
 gi|324314196|gb|ADY25311.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus proteolyticus
           MRP]
          Length = 221

 Score =  149 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 5/157 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSPSESAVLAKSASG-AL 184
           +R   L +++D VN PHN+ AILR+  A        +        S  + + +++SG A 
Sbjct: 15  LRQPTLSVLMDEVNKPHNLSAILRTCDAVGAMTAHAVPPQSMSLGSFRSRIFEASSGSAH 74

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPK 243
           + +   + ++  +A++ +   G Q +      +     +        ++LGAE  G+   
Sbjct: 75  KWVSVQQHASALEAIRTLQGQGVQVLATHLSQRSVDYREPDYTRPTCVLLGAEKFGVSDV 134

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             E A +   + M G++++LNVS AAA  L+  Q   
Sbjct: 135 AAEAADANIVIPMMGMVQSLNVSVAAATILFEAQRQR 171


>gi|254285517|ref|ZP_04960481.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|150424379|gb|EDN16316.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
          Length = 257

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 21  KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEH---AQALAGF 76

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 77  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 132

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 133 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 188

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 189 AFLEGVSVHKTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 247

Query: 272 AL 273
            L
Sbjct: 248 IL 249


>gi|39938630|ref|NP_950396.1| rRNA methylase [Onion yellows phytoplasma OY-M]
 gi|39721739|dbj|BAD04229.1| rRNA methylase [Onion yellows phytoplasma OY-M]
          Length = 234

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 23/231 (9%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +   +YG H +  A  N +      + T N               P   + P  + ++  
Sbjct: 26  QQFLVYGDHLIEQAQKNNA---VVTIFTSNEEK------------PGTFIAPSLMKELSQ 70

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            + V      E   L  PT +    S  ++VLD + DP N+GA++RSA AF  + +  + 
Sbjct: 71  TKTV-----FEQMALCKPTSENNLLSDKILVLDDIQDPANLGALMRSASAFGFNQVFASF 125

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK 225
             +        +S+ GAL  +   R  N    L+++    +         +   +E   K
Sbjct: 126 HSADFYHEKTIRSSQGALFSLSLKR-GNTKSFLEEIKEKNYSIFSAFPQKANITMEDAKK 184

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             K  L+LG EG+G+  +T+  +    ++     +++LNV+ A ++ +Y+ 
Sbjct: 185 YPKKVLVLGNEGQGISLETEALSDYFVNI-CTQNVESLNVAVAGSILMYLL 234


>gi|262192463|ref|ZP_06050614.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
 gi|262031622|gb|EEY50209.1| RNA methyltransferase TrmH family [Vibrio cholerae CT 5369-93]
          Length = 244

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVHHIFATAEFLAEH---AQALAGF 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 64  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHQTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|229525446|ref|ZP_04414851.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
           VL426]
 gi|229339027|gb|EEO04044.1| RNA methyltransferase TrmH family [Vibrio cholerae bv. albensis
           VL426]
          Length = 244

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA    D      F
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEHAQDLA---GF 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 64  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   + + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHQTAFQAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|56180485|gb|AAV83207.1| rRNA methylase SpoU [Idiomarina loihiensis L2TR]
          Length = 215

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 9/155 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186
           R   L +V+++V+  HN+ A++RSA A         + ++   +        +A G+   
Sbjct: 5   RQPDLTVVMENVHKNHNLSAVVRSADAIGVH-----EMHAIWLTKKARLSGGTALGSQNW 59

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +       + +AL+     G Q +    S+      +       A++LG E  G+  +  
Sbjct: 60  VKIHNHKTVGEALEATQGRGMQVVVTHLSEHSVDFREVDYTKPTAILLGQEKYGVTDEAL 119

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G++++LNVS A AV LY  Q   
Sbjct: 120 DIADYHVMIPMVGMVQSLNVSVAGAVMLYEAQRQR 154


>gi|255023881|ref|ZP_05295867.1| rRNA methylase [Listeria monocytogenes FSL J1-208]
          Length = 131

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G ++R+A A   D ++  K  +   +  + +S  G+  HIP I+ ++L + +  +   G 
Sbjct: 1   GTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQ-ADLFEWIANLEEEGV 59

Query: 208 QTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             IG   D   K L    K D +AL++G EG G+ P+ Q+  +   ++ + G  ++LNV+
Sbjct: 60  PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA 119

Query: 267 NAAAVALYITQN 278
            AA + LY  + 
Sbjct: 120 VAAGILLYGLRK 131


>gi|325955086|ref|YP_004238746.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323437704|gb|ADX68168.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 177

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 66/149 (44%), Gaps = 3/149 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    +++VLD++   HN+GA+ R+A AF  + +      +      + K+A GA E + 
Sbjct: 20  IEKIPVVVVLDNIRSMHNVGAVFRTADAFLIEKVYLCGITATPPHKEIHKTAIGATESVD 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +    N  + ++K+    +  + +         P  +   + K A+++G E  G++ +  
Sbjct: 80  WEYEENALNLIEKLRKDNYSIVCIEQVENSISFPEYEVDPSRKYAIVMGNEVDGVQQEII 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       +   G   +LNVS    + L+
Sbjct: 140 DKTDVCLEIPQSGTKHSLNVSVCTGIVLW 168


>gi|33866165|ref|NP_897724.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
 gi|33639140|emb|CAE08146.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
          Length = 278

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 21/225 (9%)

Query: 70  QLLATKNALAR-LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA 128
           +L+AT+    R       +    P + V  + +   +              P  +  L A
Sbjct: 48  ELIATERWYQRHAQLLVGVNQAIPRRLVTDEVLTAALSTVTPDG--VASLCPYSALPL-A 104

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            +++  L+VLD + DP N+G +LR+A+A     +           +   ++++GAL  +P
Sbjct: 105 PKDAHFLLVLDRIQDPGNLGTLLRTALAADVQNVWLGSG-VDPLGSKSLRASAGALLQLP 163

Query: 189 YIR--------ISNLTDALQKMHSWGFQTIGLSSDSKK------PLEQEIKNDKIALILG 234
           + R        IS LTD L+++ + G Q +       +      P  +       AL+LG
Sbjct: 164 HHRFGPDEDTAISQLTDELKRLAAGGMQVVATLVPGSQVPIRPVPYWELNWRLPTALVLG 223

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
            EG GL P+     T    L     +++LNV+ AAAV  L   + 
Sbjct: 224 TEGAGLHPELLACCTHAVTLPHSSRVESLNVA-AAAVPLLLERRR 267


>gi|15807204|ref|NP_295933.1| rRNA methylase SpoU [Deinococcus radiodurans R1]
 gi|6460013|gb|AAF11758.1|AE002054_3 rRNA methylase SpoU [Deinococcus radiodurans R1]
          Length = 230

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 5/156 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSPSESAVLAKSASG-ALE 185
           R   L +++D VN PHN+ AI+R+  A        +        S      ++ SG A +
Sbjct: 18  RQPTLTVLMDEVNKPHNLSAIIRTCDAVGVPEAHAVPPKHGTLASFEGHTYEATSGSAHK 77

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKT 244
            +     ++   A++++ + GFQ +      +     +        ++LGAE  G+  + 
Sbjct: 78  WVKVHPHADAVSAVRELQAQGFQVLATHLSQRSVDYREPDYTKPTCVLLGAEKWGVSDEA 137

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E A +   + M G++++LNVS AAA  L+  Q   
Sbjct: 138 AEAADANIVIPMFGMVQSLNVSVAAATILFEAQRQR 173


>gi|332299307|ref|YP_004441228.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176370|gb|AEE12060.1| tRNA/rRNA methyltransferase (SpoU) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 184

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            LE   L +    +     L ++LD+V   HN+G+I R+A AF  + ++           
Sbjct: 8   ILEMNRLTTEEYHSAPKVPLTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHP 67

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPL-EQEIKNDK-IAL 231
           ++ K+A GA E +P+  + +  + L++  + G   + L  +    PL  Q   +D+   L
Sbjct: 68  LIHKTAIGAEEAVPWRHLDSAIEFLEQCRAAGRTILALEQTHQSIPLGNQPALDDRGAVL 127

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           I+G E  G+  +  + A     +   G   +LNVS A  +A+Y
Sbjct: 128 IVGNEVHGISDEVIQYADYCLEIPQYGTKHSLNVSVATGIAIY 170


>gi|15603722|ref|NP_246796.1| hypothetical protein PM1857 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722284|gb|AAK03941.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 359

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 112/280 (40%), Gaps = 17/280 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           +  +  K+  +  S  A  +   +    +     +    ++ E + +YG +   A     
Sbjct: 80  ASGEEGKVKVVVKSTGASDKPREKKTGALSPRAPEKIKKNRAEEMKVYGENACQALFAQR 139

Query: 65  SRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETA 119
              I ++ AT     +     +           V    +  +V   A H G+ +   +  
Sbjct: 140 PESIVRIWATVEMAKKSGELFSYLAEQKKAYHVVDSAEL-ALVSGTAHHGGICMLVKKAR 198

Query: 120 PL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLA 177
           P  L+  LD  R    L+++D V +PHN+G ++R+   F   G++  +  + + +     
Sbjct: 199 PFTLAGYLDIPRKQDCLVLIDGVQNPHNLGGVVRTCAVFGVKGVVIEQALADNLNAPAAM 258

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAE 236
           + A G +E++  +  +++  AL ++   G+Q I   ++   KPL +    +K+  +L  E
Sbjct: 259 RVAEGGMEYVRVLETTDVPKALAQLRQAGYQLIHVTANKQAKPLSKLHFTEKVVFVL-NE 317

Query: 237 GKGLRPKTQETA-TSMAHLHMPG--IIKALNVSNAAAVAL 273
            +G    +   A      L +      + LN++ A  + L
Sbjct: 318 -QG--DASLAQAEDEQVVLSLGNPLKAE-LNIAVATGILL 353


>gi|303327802|ref|ZP_07358242.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
 gi|302862163|gb|EFL85097.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio sp. 3_1_syn3]
          Length = 239

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +VL +++DPHN+ AI RS  AF    +      +P  + +  K+++ A + +  
Sbjct: 63  RQNDLTLVLANIHDPHNVSAIYRSCDAFGLSKVHLYYTNTPFPT-LGRKTSASARKWVES 121

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R  N  D ++ +   GFQ +  S S++ +PL         A+I+G E  G+  +    A
Sbjct: 122 ERHKNSADLMRTLRGQGFQVLATSCSETARPLRDWDFIRPTAVIMGNEHSGVEEELLSLA 181

Query: 249 TSMAHLHMPGIIKALNVSN 267
               ++ M G+I++ NVS 
Sbjct: 182 DGQLYIPMYGMIQSFNVSV 200


>gi|290968976|ref|ZP_06560511.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780932|gb|EFD93525.1| RNA methyltransferase, TrmH family [Megasphaera genomosp. type_1
           str. 28L]
          Length = 270

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 104/284 (36%), Gaps = 31/284 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M+ I+ +++E+I                  KK  +  QK +   +   + + G   ++ A
Sbjct: 1   MDEITSRENERI------------------KKACALKQK-KERQKQRKVLVEGWRLIADA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHP----FPVKTVPPQTIDKIVGKEAVH-QGLA 115
                  + Q   T  A     +           +    V P+  DK+  KE  H QG+A
Sbjct: 42  AAQGLSPV-QCFITPQAATHERFQGLYALGKRLSWQFFVVAPKVYDKL--KETQHPQGIA 98

Query: 116 LETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
               P  +  LD        + ++ L  V DP N+G+I+R+A A     ++ ++      
Sbjct: 99  A-VLPYFTTALDLTERIAPQRPIVYLQSVQDPGNLGSIIRTAAAADAGAVVLSRDSVDVY 157

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  + +SA GA+  IP +   ++            +  G ++       Q        L 
Sbjct: 158 NDKVLRSAMGAVFKIPLVTDVDMETLQAYCLRTHRRLTGAAASGSSSYTQLDYAQARVLA 217

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            G EG GL     +       + M    ++LN++ A  + LY  
Sbjct: 218 FGNEGNGLALPFLQACAETVTIPMRPETESLNLAAAVGIVLYKA 261


>gi|110597360|ref|ZP_01385647.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
 gi|110340904|gb|EAT59375.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium ferrooxidans DSM
           13031]
          Length = 180

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 73/177 (41%), Gaps = 5/177 (2%)

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           + G   +H       +P             + ++L ++    N+G++ R+A A   + +I
Sbjct: 1   MQGFRKLHGPEMNRMSPEEYA---GAPKHPIYLMLHNIRSMWNVGSMFRTADAAGIEKMI 57

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQ 222
            +   +      + K+A GA + + +   ++   AL  +   G +  GL  ++  +P   
Sbjct: 58  LSGYTATPPRKEIDKTALGAQDSVAWEYHADPLVALSALKRAGVKICGLEITEGSRPYSA 117

Query: 223 EIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               D  + L++G E  GL  +  E    +  +   G   +LNV+ A+ +AL+    
Sbjct: 118 LTPGDFPLCLVVGNEVDGLENELLELCDEVLEIPQYGTKHSLNVAVASGIALFEFVR 174


>gi|294778614|ref|ZP_06744036.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
 gi|294447563|gb|EFG16141.1| RNA methyltransferase, TrmH family [Bacteroides vulgatus PC510]
          Length = 251

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 99/256 (38%), Gaps = 18/256 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
            K ++S   K +   + E +F+  G   V   L +   K+  L+AT N L          
Sbjct: 7   IKYIRSLELKKK--RKEEQVFVAEGHKLVGDLLGHFPCKL--LIATSNWLKMNHSATANE 62

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               +  V  + + +   ++   + LA+   P      + ++ S L + LD V DP N+G
Sbjct: 63  ----IIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIK-SSLCLALDDVQDPGNLG 117

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F  + I  +   +   +    ++  GAL  +      +L   ++ +      
Sbjct: 118 TIIRLADWFGIEHIFCSTGTADVYNPKTVQATMGALARVKVHYC-SLPQLIESLTD--IP 174

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALN 264
             G   +      + +    + +++G EGKG+ P+ +       ++          ++LN
Sbjct: 175 VYGTFLNGNIIYAESLSAHGL-IVMGNEGKGVSPEVERLINKKLYIPNYPQERETSESLN 233

Query: 265 VSNAAAVALYITQNHF 280
           V+ A AV     +   
Sbjct: 234 VAIATAVVCSEFRRRL 249


>gi|145219563|ref|YP_001130272.1| tRNA/rRNA methyltransferase (SpoU) [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205727|gb|ABP36770.1| tRNA/rRNA methyltransferase (SpoU) [Chlorobium phaeovibrioides DSM
           265]
          Length = 178

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 2/160 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +    A     ++++L ++    N+G++ RSA A   + II +   +      + K+A
Sbjct: 13  LSTDEYAAAPKHPVILMLHNIRSMWNVGSMFRSADAAGIEKIILSGYTATPPRKEITKTA 72

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGK 238
            GA   +P+    N    L+ +   G +  GL       L  E+K     + L++G E +
Sbjct: 73  LGADASMPWEYTDNPQQTLRDLKKSGVRICGLEIAEGSRLYTEMKAQDFPVCLLVGNEVQ 132

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+          +  +   GI  +LNVS AA V L+    
Sbjct: 133 GIEDNLLAQCDLVLEIPQFGIKHSLNVSVAAGVVLFELVR 172


>gi|269961010|ref|ZP_06175379.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834229|gb|EEZ88319.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 285

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 89/243 (36%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT   L + + + N    
Sbjct: 49  KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLTVKQIFATAEFLEQHNQELNGFEC 106

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V             A +  P +   +   L++ LD V+DP N+G I
Sbjct: 107 IEASLDDLTKASTLVSNN-------AAIAVVEIPNVTVPQAKGLMIALDGVSDPGNLGTI 159

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 160 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEDANLPVY 215

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + E   + I L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 216 GAFLEGESVHKTEFSAEGI-LLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 274

Query: 271 VAL 273
           + L
Sbjct: 275 IIL 277


>gi|320537356|ref|ZP_08037311.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
           phagedenis F0421]
 gi|320145821|gb|EFW37482.1| RNA 2'-O ribose methyltransferase substrate binding [Treponema
           phagedenis F0421]
          Length = 254

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 15/236 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           + G   V A +     KI +L  T+         +          + V    ++K+    
Sbjct: 11  VCGFEAVKALVKQHPEKISRLFFTQERAKAFGDASKYLAAKKRLYRVVEEADLEKL-SLS 69

Query: 109 AVHQGLALETAPLLSPTLDA------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
             HQG+       + P +D        ++S +++ LD V + +N+GAI+RSA  F    +
Sbjct: 70  VHHQGVVAMIEEPVIPLIDEQIIDGWAKDSAVVLFLDRVGNSNNLGAIIRSAAFFGIPAV 129

Query: 163 ITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I T        +    + A G +E +      ++   L+         IG    S + L 
Sbjct: 130 IITDEDPQAKITTSAYRVAQGGMEFVTIYHTRSIQWLLRACEGK-ITRIGADHRSFRNLN 188

Query: 222 QEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   ++   +ILG E  GL   +++    +  +   G I++LNV+ A  + L
Sbjct: 189 SLPTLLSPDEATMIILGNEETGLSEASKKACDHLVKIPGSGAIESLNVAQAGTLFL 244


>gi|270296788|ref|ZP_06202987.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317480146|ref|ZP_07939256.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
 gi|270272775|gb|EFA18638.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316903693|gb|EFV25537.1| SpoU rRNA methylase [Bacteroides sp. 4_1_36]
          Length = 253

 Score =  149 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 14/248 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ ++    +     G   V   L +   +   LLAT   L+R   +  L     V  V 
Sbjct: 15  EQKKNRKADKVFLAEGPKLVGDLLGHFPCQF--LLATSEWLSR---NRPLSTVTDVTEVS 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + + +    +   Q LA+   P     +  + +S L + LD V DP N+G I+R A  F
Sbjct: 70  EEELSRASLLKTPQQVLAVFRQPDEETDISVISHS-LCLALDDVQDPGNLGTIVRLADWF 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             + I  +       +    ++  G +  +       L + ++ +        G   D +
Sbjct: 129 GIEHIFCSPNTVDIYNPKTVQATMGGIARVRLHYTP-LPEFIRSLKD--IPVYGTFLDGE 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273
               Q +  + + +++G EG G+  + +       ++          ++LNV+ A AV  
Sbjct: 186 NMYGQPLSKNGL-IVMGNEGNGIGKEVEALINRKLYIPNYPASRETSESLNVAIATAVVC 244

Query: 274 YITQNHFA 281
              +   A
Sbjct: 245 AEFRRQAA 252


>gi|281422707|ref|ZP_06253706.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205]
 gi|281403186|gb|EFB33866.1| RNA methyltransferase, TrmH family [Prevotella copri DSM 18205]
          Length = 249

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 94/245 (38%), Gaps = 15/245 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++ ++       G   V   L      +  ++AT   L    + A       V  V  +
Sbjct: 16  KKNRNKEGKFVAEGFKVVDDLLALQPADL--IVATGEWLRGKHFGAETE----VIEVTDE 69

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + K+   +   Q LA+           ++  S+L + LD V DP N+G I+R A  F  
Sbjct: 70  ELKKVSFLQHPQQVLAVFKQATSGDY--SINTSELSLALDGVQDPGNLGTIIRIADWFGI 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I  ++  +   +  + ++  G++  +      +L   ++ +        G   D    
Sbjct: 128 THIYCSQDTADVYNPKVVQATMGSIARVKVEY-GDLLGLVESLP-ADVPVYGTLLDGDNI 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYI 275
            +Q+++N  + +++G EGKG+ P   +       +           +LNV+ A A+    
Sbjct: 186 YQQKLENRGL-IVMGNEGKGISPALAKKVNHKLLIPNFPEGRATADSLNVAIATAITCSE 244

Query: 276 TQNHF 280
            + +F
Sbjct: 245 FRRNF 249


>gi|254374182|ref|ZP_04989664.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
 gi|151571902|gb|EDN37556.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
          Length = 250

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 101/266 (37%), Gaps = 28/266 (10%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +     +   + G+     AL   P ++I  +L T+ A     
Sbjct: 6   QKLYKEIKKLHSSQGRKK----SQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                        +  +  + +  +    QG+ +       P L+ +  +   ++VLD +
Sbjct: 62  PLNKK------YIITEKDFEAL-SQTQNPQGVLILA---EKPKLEELSFSDDFILVLDRI 111

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--L 199
            DP NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +   +
Sbjct: 112 QDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFSYITNLAELKNI 171

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPKTQETATSMAHLHM 256
            K+          +         +    K+A   L+ G E  G+      +      +  
Sbjct: 172 AKLQQRKIWL--TTPHQGVSCYAKDF--KLANSILVFGEEANGIEDF---SVGQKTMIPT 224

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
              I++LNV+ AA + L+       +
Sbjct: 225 LSDIESLNVAQAATIYLFEGLRQRLR 250


>gi|311746529|ref|ZP_07720314.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
 gi|126575429|gb|EAZ79761.1| RNA methyltransferase, TrmH family [Algoriphagus sp. PR1]
          Length = 249

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 98/243 (40%), Gaps = 10/243 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++ +QK ++  Q +  F+ G  +V   +N+    I  +L T+    R +      + 
Sbjct: 8   KFIKTLHQK-KYRIQSQKFFVEGEKSVLEVINSGFL-IDMILVTERFYERHEGKLKNLNA 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +       ++ I    +     AL    +      +   ++L++ LD V DP N+G I
Sbjct: 66  -EILHATQNQLENIGQYRSNE--TALAVVNMKPNDRFSFPENELVIALDDVRDPGNLGTI 122

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    ++ + + +   +  + +S+ G+   + +    +L +  +    WG    
Sbjct: 123 IRIADWYGIKNLLFSSQTADFYNPKVIQSSMGSFTRVNFYY-GDLKEVFE---EWGVPIY 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G        + +        L++G E  G+  + +   +    +   G  ++LNV+ A A
Sbjct: 179 GAYLGGSN-IHELKSPAAGVLLMGNESNGISKELEPFVSKKLTIPGSGEAESLNVAIATA 237

Query: 271 VAL 273
           +  
Sbjct: 238 ILC 240


>gi|297564557|ref|YP_003683529.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
 gi|296849006|gb|ADH62021.1| tRNA guanosine-2'-O-methyltransferase [Meiothermus silvanus DSM
           9946]
          Length = 228

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPS-----ESAVLAKSAS 181
           A R   L ++++ V+  HN  A+LRS  A    +  +    +         S   A ++ 
Sbjct: 14  ARRQPDLTVLMERVHKWHNFSAVLRSCDAVGVLEAHLIPAAHGIPTEDQNPSRHTAATSG 73

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGL 240
            A + +      +   A   + S GF       S       +        ++LG E  G+
Sbjct: 74  SAAKWVGLRTYPDTPSAFADLRSRGFVIYAAHFSHKAIDYREVDYTRPTCILLGTEKWGV 133

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +    A     + M G++++LNVS AAAV L+  Q    +
Sbjct: 134 TEEAATLADGHIVIPMMGMVQSLNVSVAAAVILFEAQRQRIQ 175


>gi|294675164|ref|YP_003575780.1| TrmH family RNA methyltransferase [Prevotella ruminicola 23]
 gi|294471809|gb|ADE81198.1| RNA methyltransferase, TrmH family [Prevotella ruminicola 23]
          Length = 176

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 10/173 (5%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L T  +   T+D  + +    L++VLD V   HN+G++ R+  AF  + +      S   
Sbjct: 4   LRTIEMDRLTVDEFKQADKLPLIVVLDDVRSMHNVGSVFRTGDAFRIEAVYLCGITSTPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPL--EQEIKNDKI 229
            A + K+A GA + + +       +A++ + + G++   +  +     L     I N K 
Sbjct: 64  MAEIHKTALGAEDSVTWKYFDTALEAVETLKAEGYEVYSVEQAHGSTMLQNFTPINNKKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A++LG E KG+  +  + +     +   G   ++NVS    + ++    HFAK
Sbjct: 124 AVVLGNEVKGVHQEVIDASDGCLEIPQFGTKHSMNVSVTGGIIIW----HFAK 172


>gi|262402833|ref|ZP_06079394.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
 gi|262351615|gb|EEZ00748.1| RNA methyltransferase TrmH family [Vibrio sp. RC586]
          Length = 244

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEH---AQALAGF 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 64  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHQTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|270607381|ref|ZP_06221632.1| rRNA methylase [Haemophilus influenzae HK1212]
 gi|270318140|gb|EFA29373.1| rRNA methylase [Haemophilus influenzae HK1212]
          Length = 105

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +++  K A GA E +P IR++NL+  L+ +        +G + ++ + + Q      +AL
Sbjct: 1   TSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETIYQSKLTGPLAL 60

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           ++GAEG+G+R  T+E    +  + M G + +LNVS A  V L+ 
Sbjct: 61  VMGAEGEGMRRLTREHCDQLISIPMAGSVSSLNVSVATGVCLFE 104


>gi|15640821|ref|NP_230452.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585767|ref|ZP_01675562.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121725984|ref|ZP_01679283.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147674554|ref|YP_001216286.1| RNA methyltransferase [Vibrio cholerae O395]
 gi|153817294|ref|ZP_01969961.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|153821410|ref|ZP_01974077.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|227080982|ref|YP_002809533.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|254847940|ref|ZP_05237290.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|297581202|ref|ZP_06943126.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|298499065|ref|ZP_07008872.1| RNA methyltransferase [Vibrio cholerae MAK 757]
 gi|9655252|gb|AAF93967.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121550130|gb|EAX60146.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121631466|gb|EAX63836.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|126512210|gb|EAZ74804.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126521120|gb|EAZ78343.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|146316437|gb|ABQ20976.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|227008870|gb|ACP05082.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|227012627|gb|ACP08837.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|254843645|gb|EET22059.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|297534518|gb|EFH73355.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|297543398|gb|EFH79448.1| RNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 257

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 21  KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEH---AQALAGF 76

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 77  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 132

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 133 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 188

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   + + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 189 AFLEGVSVHQTAFQAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 247

Query: 272 AL 273
            L
Sbjct: 248 IL 249


>gi|149372584|ref|ZP_01891696.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
 gi|149354627|gb|EDM43191.1| tRNA/rRNA methyltransferase (SpoU) [unidentified eubacterium SCB49]
          Length = 232

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 5/163 (3%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G   E        + + R     +V + V   HN  A++RS  AF    +   +      
Sbjct: 22  GFLTEERMERFEKILSERTKHFTVVTEDVYQIHNTSAVMRSCDAFGIQDLHLVEE---KF 78

Query: 173 SAVLAK-SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIA 230
              + K  A GA + +   R SNL D +  +   G+Q +  S  +    L       K A
Sbjct: 79  GKRVDKEIAMGAQKWVTLHRHSNLEDCVSTLKDKGYQIVATSPHADASYLHDFDYTKKSA 138

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  G E  GL     E A ++  + M G  ++LN+S +AA+ +
Sbjct: 139 IFFGTEKDGLTEGVLEQADALIKVPMYGFTESLNISVSAAIIM 181


>gi|323494049|ref|ZP_08099165.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
 gi|323311676|gb|EGA64824.1| RNA methyltransferase, TrmH family [Vibrio brasiliensis LMG 20546]
          Length = 244

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N    + Q+ AT   LA+   + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSELTVKQIFATGEFLAQHAQELS---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDELTKASTLVSNN----AAIAVVEIPSVEVPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   ++    D    +        
Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVTVSQL----DLPAYLEQANLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +     E     I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHRTEFSAQGI-LLMGSESHGVREQAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|15677017|ref|NP_274169.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|15677053|ref|NP_274205.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|7226378|gb|AAF41528.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|7226416|gb|AAF41563.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
          Length = 203

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 1/158 (0%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P   A+      +VLD V DP N+G +LRSA A     +I  K  + + S  + ++  GA
Sbjct: 45  PDAGALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGAVILGKGCADAWSPKVLRAGMGA 104

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    ++L   L +     F T  L  + +  L  E   +  A + G EG G+   
Sbjct: 105 HFLSEIYPQADLEIWLVRYKGRVFAT-ALREEKQAVLYGEDLCEPTAWVFGNEGAGVGKA 163

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + A     + M    ++LNV+ AA + L+      A
Sbjct: 164 VLDRADKCVRIPMHDATESLNVAMAATICLFEQMRQRA 201


>gi|298209014|ref|YP_003717193.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83848941|gb|EAP86810.1| putative tRNA/rRNA methyltransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 244

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 103/253 (40%), Gaps = 22/253 (8%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K ++S NQK +   +     + GV +++    N S +++ LL+T+N          L H 
Sbjct: 8   KLIRSLNQK-KFRLKHGLFVVEGVKSINE-FLNSSLELYSLLSTENVF--------LSHS 57

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
              + +  + +  I         +AL    +  P  D  +N   L+ LD V DP N+G I
Sbjct: 58  KETQLISLKELQAISHLSTAQ--VALAVFKIPVPKTDFKQNR--LLALDGVRDPGNLGTI 113

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R    F+   +I +K      +  + ++  G+L  +  I     TD  + +++      
Sbjct: 114 IRLCDWFNIQSLICSKDTVDCYNPKVVQATMGSLTRVEVIY----TDLHKHLNTLDLPIF 169

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSN 267
           G   + +    + +  D   +++G E  G+  + +E       +   G     ++LNV+ 
Sbjct: 170 GTFMNGESVYSKPLPED-FVIVMGNEANGVTKEIEELCNHRIAIPQFGSGAPTESLNVAT 228

Query: 268 AAAVALYITQNHF 280
           A A+ L       
Sbjct: 229 ATAITLSEFSRRL 241


>gi|229530071|ref|ZP_04419461.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
 gi|229333845|gb|EEN99331.1| RNA methyltransferase TrmH family [Vibrio cholerae 12129(1)]
 gi|327483584|gb|AEA77991.1| RNA methyltransferase, TrmH family [Vibrio cholerae LMA3894-4]
          Length = 244

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEH---AQALAGF 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 64  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHQTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|153800597|ref|ZP_01955183.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|124123886|gb|EAY42629.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
          Length = 257

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 21  KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEH---AQALAGF 76

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 77  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 132

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 133 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 188

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   + + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 189 AFLEGVSVHQTAFQAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 247

Query: 272 AL 273
            L
Sbjct: 248 IL 249


>gi|62184854|ref|YP_219639.1| hypothetical protein CAB210 [Chlamydophila abortus S26/3]
 gi|62147921|emb|CAH63668.1| 4.2.3 [Chlamydophila abortus S26/3]
          Length = 265

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 92/261 (35%), Gaps = 9/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +N+   K+  +   K   + +     L G   +  AL +      ++        +    
Sbjct: 6   KNNPKVKE--AVALKHNRSRKGPVFLLEGFREIQKALASGYE-CERIFCGTRISEKEQAF 62

Query: 85  ANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNS-QLLMVLD 139
            +     P++ V    +T+ K+  KE     +A+           L   RN     ++++
Sbjct: 63  LHTIQKLPLEKVYCTEETLSKLSYKEHHDNFIAVMKKRWWSRKEFLAQKRNPLPFYLIIE 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GAILR A     DG+I         +  + +S+ G +  +P    + L    
Sbjct: 123 QVEKPGNVGAILRIADGVGADGVILCDPIVDVYNPNVIRSSLGTVFTLPI-WSATLDQVQ 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           Q +    +     S  +      E  N  + L+ G+E  GL         S   L M G 
Sbjct: 182 QVILEEKWHAFVTSPRAHTMYFCENYNQPLVLVFGSEKDGLTASWLRGNFSKISLPMLGQ 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN+S A +   Y      
Sbjct: 242 ADSLNLSTAVSAVAYEVVRQR 262


>gi|87200913|ref|YP_498170.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136594|gb|ABD27336.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 267

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 83/233 (35%), Gaps = 8/233 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVPPQTIDKI 104
               G+  ++ A     R    LL  +   A    D    A       V  +P   + K+
Sbjct: 32  FLAEGLRLLTDA-REGGRLPEILLMAEGREAHPLLDELEQAVDAAGGEVIELPLDILSKV 90

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            GKE   Q +A   A   +      RN+  + +V   + DP N+G +LR+A A    G+I
Sbjct: 91  TGKE-NPQAVAGVFAEWDTSIRLIDRNAAPIWLVAHAMRDPGNLGTMLRTADAVGAGGLI 149

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
                    S    +++ GA+      +     + +  + +   Q +  S     P    
Sbjct: 150 LIDDCVDPFSVEAVRASMGAIFTEKLAQAR-WDEFIAWLRAGEGQLVAASLRDAVPYRGA 208

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  +++G E +GL    +        + M G   +LN + A AV  Y  
Sbjct: 209 PYVAPCFVMVGNESRGLPEDYELACDLRVTMPMKGRADSLNAAVAGAVLAYEV 261


>gi|254562622|ref|YP_003069717.1| TRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
 gi|254269900|emb|CAX25878.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           DM4]
          Length = 269

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 19/278 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +  ++ D    +L   +RD ++     ++ R         + G   V+  L    R  F 
Sbjct: 3   EPIAIDDPDDPRLS-AYRDVRERDLVGRQGR-------FIVEGE--VTLRLLFSGRARFA 52

Query: 71  LLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSP 124
             +   A  R    A+L      PV       +  + G   +H+G+         P    
Sbjct: 53  AESVLLAPERWPGFADLLRGDGPPVYLAGKDVMSAVAGF-PIHRGVLAVGLRGQEPPPES 111

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            +       L++ L  + +  N+G + R+A AF  D +               + ++GA 
Sbjct: 112 VIPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAA 171

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P+ R  +    L          + L+    + L++     +  L+LG EG GL    
Sbjct: 172 LTVPFARAPSGAALLDLAERHALTPLALTPGGSETLDRLDPPARALLLLGTEGPGLPESL 231

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFA 281
              A     + M     +LNV+ A A+AL+       A
Sbjct: 232 MARA-RRVRIAMAPGFDSLNVATAGAIALHHLAGRRLA 268


>gi|86133500|ref|ZP_01052082.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820363|gb|EAQ41510.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 229

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 14/186 (7%)

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           V  V  + ++ +       +G   +        + A R     +VL+ +  PHN  A++R
Sbjct: 3   VFMVDKKLLEYL-------EGFLTDKRKQTFQKVLAERTRHFTVVLEDIYQPHNASAVVR 55

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI----SNLTDALQKMHSWGFQ 208
           +   F    +   +      + V      GA + I   R      N    L  + + G+Q
Sbjct: 56  TCDIFGVQDLHVIENR--YINRVSKYVTKGAQKWITTKRYKTDGDNTKTCLNHLKTAGYQ 113

Query: 209 TIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            I  S  +   L Q+ K + K A + GAE  G+    +E A     + M G  ++ N+S 
Sbjct: 114 IIATSPHADANLLQDFKIDKKTAFVFGAEATGISDTVKEHADGFLKIPMVGFTESFNISV 173

Query: 268 AAAVAL 273
           AAA+ L
Sbjct: 174 AAAIIL 179


>gi|319953770|ref|YP_004165037.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422430|gb|ADV49539.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 240

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 96/249 (38%), Gaps = 19/249 (7%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+    Q  ++ +  +   + G+ T+   L + S +++ + +T +       + N     
Sbjct: 8   KLIKSLQLKKNRNLHQLFVVEGLKTIQELLKS-SFEVYSVFSTDDHFV----EENSAFSA 62

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            + +V  + +  +        G              A+ ++  ++ +D + DP N+G I+
Sbjct: 63  LISSVDLKKMSSL----NTPNGYLGVFKMSQKK---AIHDNAWVVAVDTIQDPGNLGTII 115

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F    ++ +       +  + ++  G++  +    + NL D L+     G    G
Sbjct: 116 RLCDWFGIKDLVCSSDTVDCYNPKVIQATMGSITRVNVTYL-NLIDFLE---ETGLPIYG 171

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVSNAA 269
              D +     ++    I L++G E  G+  + ++       +   G    ++LNV+ A 
Sbjct: 172 AFMDGETVYTSQMPVKGI-LVMGNEANGVSAEVEKLVQKRIAIPQFGAQTAESLNVATAT 230

Query: 270 AVALYITQN 278
           A+ L   + 
Sbjct: 231 AILLNEIRR 239


>gi|224283268|ref|ZP_03646590.1| rRNA methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 279

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 28/266 (10%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---- 86
           +K+     + R   +     + G  +V  A+      +  L             A     
Sbjct: 7   RKVADLANR-RTRERFGRFLIEGPQSVREAVTWMPDAVRDLYVQAADGPDGPRIAGETLT 65

Query: 87  ------LPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAPLLSPTLDAVRNSQLLMV 137
                   H   V       + +I       QG+A      A   +     +     +  
Sbjct: 66  SIVERSQEHRIYVHPASEAVMRRISPD---CQGIAAVGDADAVRATAQGTQLPEKPFVAA 122

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
              V DP N G ++R+A A  CD ++         +  + ++ +G+L HIP + +  + +
Sbjct: 123 FWQVRDPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGSLFHIPVMTMG-VDE 181

Query: 198 ALQKMHSWGFQTIGLS---SDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQET 247
                     +T+      +D ++P        +Q++     A+I G E +GL P     
Sbjct: 182 FFGWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIFGNEARGLEPGLLGR 241

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
              +  + + G  ++LN++ +AA+ L
Sbjct: 242 CDDIVRIPLYGKAESLNLATSAAIML 267


>gi|253568346|ref|ZP_04845757.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842419|gb|EES70499.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 252

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 101/247 (40%), Gaps = 18/247 (7%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPP 98
           + T + E +FL  G       L +   +   L AT + L A  D  AN      +  V  
Sbjct: 16  KKTRKEEQVFLAEGPKLTGDLLGHFPCRF--LAATSSWLQAHPDIQAN-----EIAEVSQ 68

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + + +   ++   Q LA+   P  + + D VR S L + LD + DP N+G I+R A  F 
Sbjct: 69  EELSRASLQKTPQQVLAVFEQPQYTLSPDFVRQS-LCLALDDIQDPGNLGTIIRLADWFG 127

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            + II ++      +    ++  G +  +     ++L + +  +        G   D + 
Sbjct: 128 IEHIICSQNTVDVYNPKTIQATMGGIARVKVHY-TSLPEFIHSLGDA--PVFGTFLDGEN 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALY 274
             EQ +  + + +++G EG G+  + +       ++          ++LNV+ A AV   
Sbjct: 185 MYEQPLSTNGL-IVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLNVAIATAVICA 243

Query: 275 ITQNHFA 281
             +   A
Sbjct: 244 EFRRQAA 250


>gi|198275948|ref|ZP_03208479.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
 gi|198271577|gb|EDY95847.1| hypothetical protein BACPLE_02131 [Bacteroides plebeius DSM 17135]
          Length = 252

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 13/246 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++    +     G   V+  L         L+AT   L                 V  +
Sbjct: 16  KKYRKAEKAFLAEGNKLVNDLL--GHFSCKLLIATAQWLETHPLLLAQETI----EVSAE 69

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +        Q +            D++    L + LD V DP N+G I+R A  F  
Sbjct: 70  ELAR-ASLLKTPQEVLAVFDLPSYTYDDSLPGHSLCLALDDVQDPGNLGTIIRIADWFGI 128

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + I  ++  + + +    ++  GAL  +      +L + ++          G   D K  
Sbjct: 129 EDIFCSQGTADAFNPKTVQATMGALARVRLHYC-DLKEFIRVQTERNVPVFGTFLDGKNI 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYI 275
             Q++    + +++G EG G+  + +   +    +          ++LNV+ A A+    
Sbjct: 188 YSQKLSAQGV-IVMGNEGNGVCKEIENLVSQKLLIPNYPQGKETSESLNVAVATAIVCAE 246

Query: 276 TQNHFA 281
            +   +
Sbjct: 247 FRRRLS 252


>gi|317121670|ref|YP_004101673.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
 gi|315591650|gb|ADU50946.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
          Length = 273

 Score =  148 bits (375), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 58/267 (21%), Positives = 101/267 (37%), Gaps = 14/267 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+++   ++ RH  Q     + G   V  AL    R + Q + T    A     A
Sbjct: 7   QNPRIKRLRKLQER-RHRRQLGATLVEGRRFVEEAL-AAGRPVRQAIYTAAFAAAPAGAA 64

Query: 86  NLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETA-----PLLSPTLDAVRNSQLLM 136
            L         +  V  + ++ +   E   QG+  E A     P+       V   +L +
Sbjct: 65  LLRALAAAGTELAEVTDRLLEAVAMTE-TPQGIVAEVAVDEPAPVGPAWWRQVAEGRLPL 123

Query: 137 VL--DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            L  D V DP N+G ++R+A      G +              ++++GA   +P  R  +
Sbjct: 124 ALLPDGVQDPGNLGTLVRAAAGLGAAGAVLVPGTVDPFHPRAVRASAGACLRLPMARADS 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              A +   + G       +++  P           L++G EG G+ P+ Q  AT    +
Sbjct: 184 AAGAAESARAAGLAVWVAEAEAATPCWAVDWRRPCLLVVGNEGAGVSPEVQRYATGRVAI 243

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            + G I +LNV+ A  + LY      A
Sbjct: 244 PLAGGIGSLNVAMAGCILLYEAARQAA 270


>gi|297531654|ref|YP_003672929.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
 gi|297254906|gb|ADI28352.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
          Length = 247

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIP 188
           R   + ++++ V+DPHN  A+LR+A AF    +      +P S + ++ + A    + + 
Sbjct: 45  RTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYAD---QWLT 101

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++  A+  + S G+Q       +   P+     +   AL+ G E  G+  +    
Sbjct: 102 LHHKPDIKTAIADLKSQGYQVYASYFGEGTIPVSDIDLSQPTALLFGNEHSGVSEEALRL 161

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY---ITQNHFA 281
           A     + M G +++ N+S AAA+ALY         A
Sbjct: 162 ADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQA 198


>gi|254505367|ref|ZP_05117514.1| rRNA methylase [Vibrio parahaemolyticus 16]
 gi|219551484|gb|EED28462.1| rRNA methylase [Vibrio parahaemolyticus 16]
          Length = 244

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 93/243 (38%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT+  LA+   + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLTVKQIFATQEFLAQNQSELSGFEC 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V             A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 66  IEASLDDLTKASTLVSNN-------AAIAVVEIPSVETPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   ++    D    +        
Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVTVSQL----DLPSYLEQSNLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + E   + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTEFAAEGI-LLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|332532503|ref|ZP_08408381.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038146|gb|EGI74593.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 243

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 96/248 (38%), Gaps = 15/248 (6%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + ++  Q     + G   V   LN+P   +  + AT   +          +  
Sbjct: 8   KLIRQLGQKKYRKQYNQYLVQGEKNVLELLNSPLNVVN-IFATNEFINAYQGKYPQANFI 66

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                  +T+ K      V    A+    +    L   + + L++ LD V+DP N+G I+
Sbjct: 67  ---EADEETLTK--ASTLVSNNAAIAIVDMPKAAL--PQANGLILALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    I+T+   + + +     +  G+   +   ++ +L D LQ +        G
Sbjct: 120 RVADWYGIKHIVTSTDSADAYNPKTISATMGSFVRVSVSQV-DLPDYLQSL---NLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D  + + +        L++G+E  G+R    +  T+   +   G  ++LNV+ A  +
Sbjct: 176 AFLDG-QSVHKTQFTGSGVLLMGSESHGIRETCAKLVTNKITIPAFGGAESLNVAMATGI 234

Query: 272 AL--YITQ 277
            L  +  Q
Sbjct: 235 ILDNFKRQ 242


>gi|110597515|ref|ZP_01385801.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340834|gb|EAT59308.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 215

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK---SASGALEH 186
           R   L +V+D+VN  HN+ AI+RS            + ++ S    +     +A+GA + 
Sbjct: 17  RQPDLTVVMDNVNKAHNLSAIIRSCDTVGI-----GELHAVSYRKSIYTEQDAAAGASKW 71

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
                   +    +K+     Q +  SS +              AL++GAE  G+     
Sbjct: 72  TTLHLYHEMATVYKKLSDQNMQILVASSSAGCMDFRNIDYTMPTALVVGAEWDGISEAAL 131

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             A     + M G++++LNVS A A+ L+  Q   +
Sbjct: 132 HGADQTIAIPMFGMVESLNVSVATALILFEAQRQRS 167


>gi|254478160|ref|ZP_05091542.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
 gi|214035889|gb|EEB76581.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
           12653]
          Length = 198

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 3/153 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R    ++ +D V + HN  AILR+  A     +      +     +    +  A   +  
Sbjct: 11  RQKDFVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSE-AKKGIEINEAVSMAANRWLFI 69

Query: 190 IRISNLTDALQKMHSW-GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            R+ +   A++++      Q +    D S K   +        L++G E KG+       
Sbjct: 70  ERVYDREKAIKELKERENLQVVVTWLDESSKDFREIDYTKPTLLVVGNELKGVSEDILNL 129

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS A  + LY      
Sbjct: 130 ADERIVIPMMGMVQSLNVSVATGIILYEALRQR 162


>gi|311695356|gb|ADP98229.1| tRNA guanosine-2'-O-methyltransferase [marine bacterium HP15]
          Length = 245

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 5/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES-AVLAKSASGALEHIP 188
           R   L ++ D V+ P N+ AI+RS  AF    +       P E      K+A G+   + 
Sbjct: 16  RQPDLSVLTDQVHKPRNLSAIIRSCDAFG---LANMHVVWPKEGFRAFRKTAGGSYNWVT 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++ +A+Q +   G +      SD               +ILG E  G+       
Sbjct: 73  THTHRSMDEAIQSLKVQGHKLYAAQLSDRAIDFRDVDYTLPCTIILGNEVDGVSVDAAAQ 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G++++LNVS+A A+ L   Q   
Sbjct: 133 ADEHIVIPMMGMVESLNVSSACAIVLSEAQRQR 165


>gi|145594669|ref|YP_001158966.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145304006|gb|ABP54588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 299

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 96/250 (38%), Gaps = 11/250 (4%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA 77
           +   ++   +  +++  +         +     + GV  ++ A+ +  +    L     +
Sbjct: 2   ARTIRVSTRNATFQQWHALLTNRTKRQRAGEFVVQGVRPITLAVEHGWQVRALLYPAGQS 61

Query: 78  LARLDWDA--NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ-- 133
           L+R   D    +    PV  V P+ + ++ GK+     L      L    L  + +S   
Sbjct: 62  LSRWSRDLLDRISGASPV-AVSPELLGELGGKDEEPPELLAVVG-LPEDRLQRIPHSANM 119

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L+M  D    P NIG+++RSA AF   G++ T   +        ++ +G+L  +P +R+ 
Sbjct: 120 LVMAFDRPTTPGNIGSLIRSADAFGAAGVVITGHAADPYDPKSVRATTGSLFTVPVVRVP 179

Query: 194 NLTDALQK---MHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    L     + +       +G     +  +          +++G E +GL    +++ 
Sbjct: 180 SHRAVLDWADSLRATRIPIEIVGTDEHGEVEITAHDLTGPTIIVVGNETRGLSTAWRQSC 239

Query: 249 TSMAHLHMPG 258
                + + G
Sbjct: 240 DRTVRIPITG 249


>gi|328950244|ref|YP_004367579.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450568|gb|AEB11469.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
          Length = 263

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 8/237 (3%)

Query: 50  FLYGVHTVSAALNNP-SRKIFQLLATK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            + G      A+      ++  +         R   +       PV  V  + + ++  +
Sbjct: 30  LVEGPREAQRAVAAGVPVELAVVWPEGLGPEERTLLEGLTARGVPVLEVAEEPMRRVSYR 89

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV--NDPHNIGAILRSAVAFSCDGIITT 165
           E    GL L   P   P L+A+       VL  V    P N+GAILRSA A    G +  
Sbjct: 90  E-NPGGLVLVARPSF-PRLEALDPPPHAPVLVAVNPEKPGNLGAILRSADAA-GAGAVVA 146

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                  +  + +S++G +  +P    S+   AL  + + G + +  S  ++    +   
Sbjct: 147 VGGVDLMNPNVIRSSTGVVFTLPTAAASS-EAALDWVRARGRRLVAASPHAETSYWEVDL 205

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +A+ +G E  GL P+  E A     + M G   +LNVS +AA+ LY      +K
Sbjct: 206 TGAVAIAVGPEHAGLPPEWLEAADVRVRIPMCGRADSLNVSVSAALLLYEALRQRSK 262


>gi|238063949|ref|ZP_04608658.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237885760|gb|EEP74588.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 286

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 9/241 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP--FPVKTVPPQTIDKIVG 106
               G   V  AL  P   + +L  T  AL R    A        PV  V  + +  +  
Sbjct: 46  FLAEGPQAVREALARPG-TVTELFGTPAALDRYADLAEHAADADVPVSDVTDEALAALA- 103

Query: 107 KEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
           +    QGL      L  P   A+    +L+ VL  + DP N G +LR+A A     ++  
Sbjct: 104 ETVAPQGLVAVCRHLDVPLDAALAAGPRLVAVLAEIRDPGNAGTVLRTADAAGAGAVVFA 163

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                  +    ++++G+L H+  +R  +    ++ + + G   +  +      L+    
Sbjct: 164 GDAVDPYNGKCVRASAGSLFHVDVVRAGDPVAVVEALRAAGLAVLATTGYGDSDLDDLAD 223

Query: 226 ND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   A + G+E  GL       A +   + + G  ++LN++ AAAV LY +     
Sbjct: 224 GGALAAPTAWLFGSEAHGLPGGLAAAADARVRVPLHGRAESLNLAAAAAVCLYASARALR 283

Query: 282 K 282
           +
Sbjct: 284 R 284


>gi|261420869|ref|YP_003254551.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|319768540|ref|YP_004134041.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
 gi|261377326|gb|ACX80069.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
 gi|300808463|gb|ADK35364.1| Rrm [Geobacillus stearothermophilus]
 gi|317113406|gb|ADU95898.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
          Length = 247

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIP 188
           R   + ++++ V+DPHN  A+LR+A AF    +      +P S + ++ + A    + + 
Sbjct: 45  RTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYAD---QWLT 101

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++  A+  + S G+Q       +   P+     +   AL+ G E  G+  +    
Sbjct: 102 LHHKPDIKTAIADLKSQGYQVYASYLGEGTIPVSDIDLSQPTALLFGNEHSGVSEEALRL 161

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY---ITQNHFA 281
           A     + M G +++ N+S AAA+ALY         A
Sbjct: 162 ADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQA 198


>gi|313898435|ref|ZP_07831972.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
 gi|312956817|gb|EFR38448.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
          Length = 243

 Score =  148 bits (374), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 54/246 (21%), Positives = 91/246 (36%), Gaps = 21/246 (8%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDK 103
           E   + G  +V A L    R I +++  +    R              P++    Q ID+
Sbjct: 2   EQYIVEGNISVKAVLLAQKRDIIKIIVDEKKKDRDTAFILRQAAQRNIPIEQNSRQAIDE 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +  +   H GL          TL AV       L +++ V DP N G ILR+  A  CDG
Sbjct: 62  LA-QGKTHGGLLALCGERRFQTLQAVAEKDSVFLALIEGVEDPFNFGYILRTLYAAGCDG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +I   R   + + V+ K+++GA E++  I  +++   L +M     Q I         L 
Sbjct: 121 VIIPPRNWTTAAGVVTKASAGASEYLNLIVATDMEALLHEMKQADIQLICAQRKDAISLY 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--------MPGIIKALNVSNAAAVAL 273
                 K+ L +G E +GL    Q  +     +         M         + + A+  
Sbjct: 181 DYAFPLKLCLAIGGEMRGLSKHVQNHSDQNLFIPYRQDFRNAMT-------AAASTAIFA 233

Query: 274 YITQNH 279
           +     
Sbjct: 234 FELVRQ 239


>gi|37675829|ref|NP_936225.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37200368|dbj|BAC96195.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 244

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+ Q+ AT   L +   +      
Sbjct: 8   KLLRALGQK-KQRKALGLFLVQGEKNVLE-LANSTLKVKQVFATAEFLQQHAVELAGYEC 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V             A +  P ++  +   L++ LD V+DP N+G I
Sbjct: 66  IEASLDDLTKASTLVSNN-------AAIAVVEIPAIETPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIIASSDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEQANLPIY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   +       I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTTFSAQGI-LLMGSESHGVREQASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|325954299|ref|YP_004237959.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
 gi|323436917|gb|ADX67381.1| tRNA/rRNA methyltransferase (SpoU) [Weeksella virosa DSM 16922]
          Length = 243

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 17/242 (7%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+ +     ++  +     + GV  V   L +    + +L  T           +     
Sbjct: 8   KIITSLGSKKYRQKYNLFVVEGVKNVKEVLKSNI-TVKELYTTNQNF-------DAKGNL 59

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           PV  + P  + KI      ++ LA+   P   P         L +VLD +NDP N+G I+
Sbjct: 60  PVHYLSPNELKKISFLSTPNECLAVCEIP---PQRSIAPVKGLTLVLDTINDPGNLGTII 116

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  F    II +K      +  +  S  G+   +        TD L+ + ++ +  +G
Sbjct: 117 RLADWFGITQIICSKESVDVYNPKVIMSTMGSFARVAVHY----TDILEVIENYKYPILG 172

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAA 270
              + +  + Q    +   L++G+E  G+    ++  T+   +   G   ++LNV+ A +
Sbjct: 173 AFMEGE-SIFQFPFPENAMLVMGSEAHGISKAVEDKITNKISIPAIGKQTESLNVAMATS 231

Query: 271 VA 272
           + 
Sbjct: 232 II 233


>gi|255075481|ref|XP_002501415.1| predicted protein [Micromonas sp. RCC299]
 gi|226516679|gb|ACO62673.1| predicted protein [Micromonas sp. RCC299]
          Length = 338

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 11/207 (5%)

Query: 81  LDWDANLPHPFP---VKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLL- 135
           L  DA +P       +   P   + K  G ++V +     E +      + A+  +  + 
Sbjct: 132 LADDACVPAGVTASRIVRAPEHVLKKAAGLQSVDRVDAVAELSMPPVVGVAALEGAGRIT 191

Query: 136 --MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             + LD + DP N+G ++R+A+A   D +          +    ++A G +  +P  R++
Sbjct: 192 RLLALDGIQDPGNLGTLVRTALALGWDAVALLPGTCDPYNDKALRAARGGVFRMPMARLT 251

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSM 251
              +  +     G Q       +              + L+LG+EG+GL      T    
Sbjct: 252 -WEELEEVTRRDGLQRFCAEPTADATAADTAATGSKGLCLVLGSEGQGLSDVALRTC-EP 309

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278
             + MPG +++LNV+ A  + LY+ + 
Sbjct: 310 VAIPMPGEMESLNVAVAGGILLYLMRR 336


>gi|300774602|ref|ZP_07084465.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300506417|gb|EFK37552.1| SpoU family RNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 176

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            T   V    L+++LD++   HN+GA  R+A AF  + II            + K+A GA
Sbjct: 16  ETFKKVEKIPLVIILDNIRSMHNVGAAFRTADAFLIEKIILCGITPQPPHREIHKAALGA 75

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            E + +   ++   A+  + S G++ IG    +           K+ K ALILG E +G+
Sbjct: 76  TESVDWSHEADTNTAVADLKSNGYEIIGIEQTTDSQMITDFTIDKSKKYALILGNEVEGI 135

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +          +   G   +LNVS    + ++     FAK
Sbjct: 136 SDEVLPNIDVFLEIPQLGTKHSLNVSVCGGIVMWE----FAK 173


>gi|146299481|ref|YP_001194072.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146153899|gb|ABQ04753.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 178

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           LE + L   +++  + S    L++VLD +   HNIG++ R++ AF  + II     +   
Sbjct: 4   LENSELERKSIEDFKKSDKTPLILVLDDIRSLHNIGSVFRTSDAFLVEKIILCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKI 229
           +  + K+A GA E + +    N+ + ++ +      T+ +         Q+    KN K 
Sbjct: 64  NKEIHKTALGATETVAWEHHENVLEVIENLKKENVLTLAIEQVESAVFLQDFQVEKNQKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL+ G E  G+  +          +   G   +LN++ +A + ++
Sbjct: 124 ALVFGNEVYGVSQEAVAICDGCIEIPQLGTKHSLNIAVSAGIVVW 168


>gi|261252040|ref|ZP_05944614.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
 gi|260938913|gb|EEX94901.1| RNA methyltransferase TrmH family [Vibrio orientalis CIP 102891]
          Length = 244

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 89/243 (36%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S K+ Q+ AT   L     +      
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLKVKQVFATAEFLTEHQGELGHFEC 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V             A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 66  IEASLDDLTKASTLVSNN-------AAIAVVEIPSIEIPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   ++    D    +        
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVTVSQL----DLPSYLEQSNLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +     +   + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHRTDFAAEGI-LLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|153834733|ref|ZP_01987400.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
 gi|148868872|gb|EDL67936.1| RNA methyltransferase, TrmH family [Vibrio harveyi HY01]
          Length = 244

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 92/243 (37%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT + L +   + N    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLSVKQIFATADFLEQHSQELN---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDELTKASTLVSNN----AAIAVVEIPNVTVPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEDANLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + E   + I L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTEFSAEGI-LLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|88857415|ref|ZP_01132058.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820612|gb|EAR30424.1| RNA methyltransferase, TrmH family protein [Pseudoalteromonas
           tunicata D2]
          Length = 261

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 95/243 (39%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++ NQK ++  Q +   + G   V   L +   ++ Q+ AT + +A         H 
Sbjct: 26  KLIRALNQK-KYRKQHQLFLVQGEKNVVELLGSD-FEVDQIFATHSFIAEHSDALRNQHV 83

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                   +    ++   A     AL    +    +   +   +++ LD V+DP N+G I
Sbjct: 84  IETDEEQLEKASTLISNNA-----ALAIVKMKQKAVPEPKG--MMLALDGVSDPGNLGTI 136

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +   ++    D    +++      
Sbjct: 137 IRVADWYGITHIIASDDCADPYNPKTISATMGSFSRVHVSQV----DLPSYLNNAALPIY 192

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G     +   +     + I +++G+E  G+RP   +  T    +   G  ++LNV+ A  
Sbjct: 193 GAYLGGENVHQVSFAKEGI-ILMGSESHGIRPLAGQHVTQKITIPAFGQAESLNVAMATG 251

Query: 271 VAL 273
           + L
Sbjct: 252 IIL 254


>gi|212693396|ref|ZP_03301524.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
 gi|212664040|gb|EEB24614.1| hypothetical protein BACDOR_02912 [Bacteroides dorei DSM 17855]
          Length = 251

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 100/259 (38%), Gaps = 24/259 (9%)

Query: 30  YKKMQSFNQKSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
            K ++S   K +   + E +F+  G   V   L     K+  L+AT N L        + 
Sbjct: 7   IKYIRSLELKKK--RKEEQVFVAEGHKLVGDLLGYFPCKL--LIATSNWLK-------IN 55

Query: 89  HPF---PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           HP     +  V  + + +   ++   + LA+   P      + ++ S L + LD V DP 
Sbjct: 56  HPVTANEIIEVTQEELSRASLQKTPQEVLAVFVQPSYDLNPEVIK-SSLCLALDDVQDPG 114

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F  + I  +       +    ++  GAL  +      +L   ++ +   
Sbjct: 115 NLGTIIRLADWFGIEHIFCSAGTVDVYNPKTVQATMGALARVKVHYC-SLPQLIESL--A 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IK 261
                G          + +    + +++G EGKG+ P+ ++      ++          +
Sbjct: 172 DIPVYGTFLSGNIIYAESLSAHGL-IVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSE 230

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+ A AV     +   
Sbjct: 231 SLNVAIATAVVCSEFRRRL 249


>gi|315607016|ref|ZP_07882022.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
 gi|315251397|gb|EFU31380.1| SpoU family RNA methylase [Prevotella buccae ATCC 33574]
          Length = 178

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 69/163 (42%), Gaps = 3/163 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E + L            L++VLD+V   +N+G++ RS  AF  + I      +   +A 
Sbjct: 7   IEMSRLSVEEFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALI 232
           + K+A G  + + +   +   +A+ ++ + G+    +         Q ++     + A++
Sbjct: 67  IHKTALGGEDSVDWKYFATTEEAVNQLKADGYFVYSIEQVEGSTKLQRLETGQGQRYAVV 126

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            G E KG+     +       +   G   +LNVS  A + ++ 
Sbjct: 127 FGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWE 169


>gi|262165100|ref|ZP_06032837.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
 gi|262024816|gb|EEY43484.1| RNA methyltransferase TrmH family [Vibrio mimicus VM223]
          Length = 244

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 95/242 (39%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L + + K+  + AT   LA     AN+   +
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LASSTLKVQNIFATAEFLAEY---ANVLAGY 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P+++  +   L++ LD V+DP N+G I+
Sbjct: 64  ECTEAALDDLTKVSTLVSNN----AAIAVVEIPSIEVPKAQGLMIGLDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHKTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|294656094|ref|XP_458335.2| DEHA2C14982p [Debaryomyces hansenii CBS767]
 gi|199430853|emb|CAG86415.2| DEHA2C14982p [Debaryomyces hansenii]
          Length = 426

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 126/353 (35%), Gaps = 84/353 (23%)

Query: 4   ISKKK----SEKIFSLKDSHYAK--LRRNHRDYKKMQSFNQKS--RHTSQ----PENLFL 51
           IS+K+    ++K+   + +   +    R +R ++K + F++    R   Q    P + ++
Sbjct: 70  ISEKEREFLNQKVDRQRRARKERKDADRQYRKHEKEERFSRFGGNRDFRQAFKNPLSEYV 129

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKTVPPQTIDKIVGKEA 109
           YG   V AAL    R  F  L T N          L   +   +     +    ++    
Sbjct: 130 YGTFPVMAALMANKRGSFNKLITHNPKESSGEIFKLAKRYGLRIDRKDSKNDLNVLSDNG 189

Query: 110 VHQGLALETAPLLSPTLDAVRN-------------------------------------- 131
           VH G+ LET PL  P +  +                                        
Sbjct: 190 VHNGIVLETKPLELPIISTLGECDPELGTYKVSIVNDLYNTEVQKSEPVVRNFSDESSSK 249

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L + LD + DP NIGAI+RSA     D I+     +     V  K+++G+L+     +
Sbjct: 250 YPLGIYLDGITDPQNIGAIVRSAYYLGADFIVVPDHETARLGPVANKASAGSLDLTSIYQ 309

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------------------ 227
             +    ++ + + G+  I  S+        ++K+                         
Sbjct: 310 TVDSLRFVESVKNNGWNVITTSAKPNHDELHDLKSKHEKVEEHLKNKFIEVDELSSMMAQ 369

Query: 228 -KIALILGAEGKGLRPKTQETATSMAHLHMPGI------IKALNVSNAAAVAL 273
             I LI+G+EG G+R   +  +  +  L   G       + +LNVS A  + +
Sbjct: 370 SPILLIMGSEGAGVRTNLKLKSDYLVGLD-KGRRLGVDIVDSLNVSVACGLLI 421


>gi|254225060|ref|ZP_04918674.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125622447|gb|EAZ50767.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 257

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 21  KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEH---AQALAGF 76

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 77  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 132

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++    D    +        G
Sbjct: 133 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV----DLPYYLAKANLPVYG 188

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 189 AFLEGVSVHQTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 247

Query: 272 AL 273
            L
Sbjct: 248 IL 249


>gi|325684149|gb|EGD26344.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 291

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 107/278 (38%), Gaps = 24/278 (8%)

Query: 1   MNLISKKKSE-KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
           M+ I ++ +  +I +  D       +   DY + Q F+    +  +           +  
Sbjct: 1   MDRIDRENNLIRINAFDDPRL----KLFTDYNEAQLFHY---YEPEAGIFIAESPKVIER 53

Query: 60  ALNNPSRKIFQLL---ATKNALARLDWDANLPHP----FPVKTVPPQTIDKIVGKEAVHQ 112
           A+      I  L+   A +  LA  D +    H     FP+       +  + G   +  
Sbjct: 54  AIRAGYEPIAMLVEGKALERDLADFDRELAANHDHLLDFPIFVAQSDLLRHLPGYNLLRG 113

Query: 113 GLALETA---PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            +        P L     A+     + VL+ V +P N+GAI RSA A   DG++ T   S
Sbjct: 114 AICAFRRKKRPSLREFAAALPKHARVGVLESVVNPTNVGAIFRSAAALGMDGVLITTDSS 173

Query: 170 PSESAVLAKSASGALEHIPYIRIS---NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK 225
                   + + G +  +P+  +         +  +   GF+T  ++  D+   ++  + 
Sbjct: 174 DPLYRRSGRVSMGTVFQVPWTYLDQKLWREKGVASLQELGFKTAAMALRDNTVDIDDPVL 233

Query: 226 N--DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              D++A+ILG+EG GL P+T   +     + M   + 
Sbjct: 234 KEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAEGVD 271


>gi|312882046|ref|ZP_07741800.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370341|gb|EFP97839.1| tRNA/rRNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 244

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 13/248 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   +    R + Q+ AT++ L R           
Sbjct: 8   KLIRALGQKKQRRAHGLFLVQGEKNVLELVKTDYR-VQQVFATQDFLDRYSQCLIGYECI 66

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                       +V             A +  P L        ++ LD V+DP N+G I+
Sbjct: 67  EATLEDLTKASTLVSNN-------AAIAIVEIPQLIEPEAEGFMIALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    I+ ++  +   S     +  G+   +   ++ NL D    +        G
Sbjct: 120 RLADWYGIKHIVASEDCADPYSPKTISATMGSFARVTVTQL-NLPD---YLKHAHLPIYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D +           I L++G+E  G+R +  +  T+   +   G  ++LNV+ AA +
Sbjct: 176 AFLDGENVHNVSFSAQGI-LLMGSESHGIREQASQHVTNKITIPSFGGAESLNVAMAAGI 234

Query: 272 ALYITQNH 279
            +   + H
Sbjct: 235 IIDNIRRH 242


>gi|91216324|ref|ZP_01253291.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
 gi|91185462|gb|EAS71838.1| putative tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC
           700755]
          Length = 242

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 99/254 (38%), Gaps = 20/254 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S N+K +H  +       GV  +   L +P R +  L +  +     + ++   
Sbjct: 6   QIKLIKSLNKK-KHRLENGLFVAEGVKVIKEFLKSPFR-LNALYSIADIFHIEEGES--- 60

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  +  + + +I   +     LA+   P  S   + V    L + LD + DP N+G
Sbjct: 61  -----HIISEKDLQQISNLKTAQTALAVFEIPKSSVPDEKVE---LTLALDSIRDPGNLG 112

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    F    +I +       +  + ++  G+L  +  I  ++L   L  + +  F+
Sbjct: 113 TIIRMCDWFGVKQLICSLDTVDCFNPKVVQATMGSLTRVNVI-FTDLESYL--LSTSNFK 169

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265
             G   D +   E  +K     ++LG E  G+  +      +   +   G     ++LNV
Sbjct: 170 -YGAFMDGENIYETSLKTKNAIIVLGNEANGISSEINSQLDAKISIPRHGVIKSAESLNV 228

Query: 266 SNAAAVALYITQNH 279
           + A A+ L   +  
Sbjct: 229 AMAGAIMLSEFKRR 242


>gi|145589617|ref|YP_001156214.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048023|gb|ABP34650.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 274

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 109/271 (40%), Gaps = 24/271 (8%)

Query: 24  RRNHRDYKKMQSF----NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
            +++  +K+++      ++  +         L G+H V   L +P  KI  L  ++  L 
Sbjct: 8   SKDNALFKEVRLLQATGSKGQKARLACGQALLEGIHLVQTWLGDPGLKI--LFTSEVGLK 65

Query: 80  RLDWD------ANLPHPFPVKTVPP---QTIDKIVGKEAVH-QGLALETAPLLSPTLDAV 129
             +          +     V  +       + ++V   A H  GL       L+P+    
Sbjct: 66  NSEIAQAVYSHLEICPDTKVYQLDSALWDLLSELV--NAPHLAGLLDLPKSSLAPSQSIA 123

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             +  +++LD V D  N+G+ILR+A A     ++     +   S  + ++  GA   +  
Sbjct: 124 TLAGDVVILDRVQDAGNVGSILRTAAAAGFTQVLALSGCAHLWSNKVLRAGMGAHRLLDL 183

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQET 247
               +    L  + +     +  ++D+K  L   +      +A ++G+EG+G+       
Sbjct: 184 YEGWSNQQVLSAVTA---PLLAATADAKCDLFSLKNDLLHPVAWVMGSEGQGVSEDLLAQ 240

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A     + +   +++LNVS AAA+ L+ T  
Sbjct: 241 A-KGISIPIDPRVESLNVSTAAAICLFETVR 270


>gi|255015276|ref|ZP_05287402.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. 2_1_7]
          Length = 255

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 17/246 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            +  ++       G   V+  L  P+ +   L+      A+  W A      P K +   
Sbjct: 16  KKFRNENNVFVAEGNKLVADML--PAFECELLI------AKPSWMAT-QGDIPAKELLVA 66

Query: 100 TIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             D I         Q +            +     +L++ LD + DP N+G I+R A  F
Sbjct: 67  EEDDIRKASFLKNPQDVLAIFKRPNWDITEITPEKELVLALDGIQDPGNLGTIIRLADWF 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               I+ +K  +   S    ++  GAL H+     ++L   LQ   +      G     +
Sbjct: 127 GISHIVCSKDTADVFSPKTVQATMGALAHVKIHY-TDLETFLQAQSAQAIPLYGTFLGGE 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273
             L ++  +    LI+G EG G+RP  +       ++          ++LNV+ A AV  
Sbjct: 186 N-LYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIATAVVC 244

Query: 274 YITQNH 279
              +  
Sbjct: 245 AEFRRR 250


>gi|150007109|ref|YP_001301852.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
           ATCC 8503]
 gi|256840404|ref|ZP_05545912.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381103|ref|ZP_06074241.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377529|ref|ZP_06987481.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
 gi|301311228|ref|ZP_07217156.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
 gi|149935533|gb|ABR42230.1| putative tRNA/rRNA methyltransferase [Parabacteroides distasonis
           ATCC 8503]
 gi|256737676|gb|EEU51002.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296280|gb|EEY84210.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265548|gb|EFI07209.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_19]
 gi|300830802|gb|EFK61444.1| RNA methyltransferase, TrmH family [Bacteroides sp. 20_3]
          Length = 255

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 17/246 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            +  ++       G   V+  L  P+ +   L+      A+  W A      P K +   
Sbjct: 16  KKFRNENNVFVAEGNKLVADML--PAFECELLI------AKPSWMAT-QGDIPAKELLVA 66

Query: 100 TIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
             D I         Q +            +     +L++ LD + DP N+G I+R A  F
Sbjct: 67  EEDDIRKASFLKNPQDVLAIFKRPNWDITEITPEKELVLALDGIQDPGNLGTIIRLADWF 126

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               I+ +K  +   S    ++  GAL H+     ++L   LQ   +      G     +
Sbjct: 127 GISHIVCSKDTADVFSPKTVQATMGALAHVKIHY-TDLETFLQAQSAQAIPLYGTFLGGE 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273
             L ++  +    LI+G EG G+RP  +       ++          ++LNV+ A AV  
Sbjct: 186 N-LYEKTLSGNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIATAVVC 244

Query: 274 YITQNH 279
              +  
Sbjct: 245 AEFRRR 250


>gi|229505582|ref|ZP_04395092.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
 gi|229510746|ref|ZP_04400225.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
 gi|229517867|ref|ZP_04407311.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
 gi|229523380|ref|ZP_04412787.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
 gi|229608600|ref|YP_002879248.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
 gi|255744607|ref|ZP_05418558.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
 gi|262161261|ref|ZP_06030372.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
 gi|229339743|gb|EEO04758.1| RNA methyltransferase TrmH family [Vibrio cholerae TM 11079-80]
 gi|229344582|gb|EEO09556.1| RNA methyltransferase TrmH family [Vibrio cholerae RC9]
 gi|229350711|gb|EEO15652.1| RNA methyltransferase TrmH family [Vibrio cholerae B33]
 gi|229357805|gb|EEO22722.1| RNA methyltransferase TrmH family [Vibrio cholerae BX 330286]
 gi|229371255|gb|ACQ61678.1| RNA methyltransferase TrmH family [Vibrio cholerae MJ-1236]
 gi|255737638|gb|EET93032.1| RNA methyltransferase TrmH family [Vibrio cholera CIRS 101]
 gi|262029011|gb|EEY47664.1| RNA methyltransferase TrmH family [Vibrio cholerae INDRE 91/1]
          Length = 244

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEH---AQALAGF 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 64  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   + + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHQTAFQAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|229513059|ref|ZP_04402525.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
 gi|229349952|gb|EEO14906.1| RNA methyltransferase TrmH family [Vibrio cholerae TMA 21]
          Length = 244

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 92/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N + K+  + AT   LA     A     F
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLKVQHIFATAEFLAEH---AQALAGF 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 64  ECIEATLDDLTKVSTLVSNN----AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   + + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHQTAFQAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|254372726|ref|ZP_04988215.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570453|gb|EDN36107.1| rRNA methyltransferase [Francisella novicida GA99-3549]
 gi|328676847|gb|AEB27717.1| rRNA methyltransferase [Francisella cf. novicida Fx1]
          Length = 250

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 100/264 (37%), Gaps = 24/264 (9%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +     +   + G+     AL   P ++I  +L T+ A     
Sbjct: 6   QKLYKEIKKLHSSQGRKK----SQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                        +  +  + +  +    QG+ +       P L+ +  +   ++VLD +
Sbjct: 62  PLNKK------YIITEKDFEAL-SQTQNPQGVLILA---EKPKLEELSFSDDFILVLDRI 111

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--L 199
            DP NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +   +
Sbjct: 112 QDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFSYITNLAELKNI 171

Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            K+          +         +E K     L+ G E  G+      +      +    
Sbjct: 172 AKLQQRKIWL--TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLS 226

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            I++LNV+ AA + L+       +
Sbjct: 227 DIESLNVAQAATIYLFEGLRQRLR 250


>gi|228470939|ref|ZP_04055784.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
 gi|228307336|gb|EEK16350.1| SpoU rRNA methylase family protein [Porphyromonas uenonis 60-3]
          Length = 186

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 3/163 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            LE   L +          L ++LD+V   HN+G+I R+A AF  + ++           
Sbjct: 8   ILEMQRLTTEEYHTASKVPLTILLDNVRSMHNVGSIFRTADAFRIEELLLVGITGCPPHP 67

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPL-EQEIKNDK-IAL 231
           +L K+A GA E +P+  + +  +AL++    G   + L  +     L  Q   +D+   L
Sbjct: 68  LLHKTAIGAEEAVPWRHLDSAIEALEQYRQEGRTILALEQTHQSITLGSQPALDDRGAVL 127

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           I+G E  G+  +  + A     +   G   +LNVS A  +A+Y
Sbjct: 128 IVGNEVHGVSDEVIQYADYCLEIPQYGTKHSLNVSVATGIAIY 170


>gi|156973799|ref|YP_001444706.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
 gi|156525393|gb|ABU70479.1| hypothetical protein VIBHAR_01509 [Vibrio harveyi ATCC BAA-1116]
          Length = 244

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 91/243 (37%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N S  + Q+ AT   L +   + N    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSSLSVKQIFATAEFLEQHSHELN---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDELTKASTLVSNN----AAIAVVEIPNVTVPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEDANLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + E   D I L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTEFSADGI-LLMGSESHGVREAASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|260903742|ref|ZP_05912064.1| rRNA methylase [Brevibacterium linens BL2]
          Length = 340

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 90/271 (33%), Gaps = 37/271 (13%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY ++     +S                +  A  + +  + +   T         D    
Sbjct: 59  DYTQLTDVALRSVREPAEGLFIAESSKIIRRA--HAAGMVPRSYLTSPKWLFDLADLIAA 116

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV----------- 137
           +  P+       ++ + G       LA    P +      V  ++ ++V           
Sbjct: 117 YDAPIFIGTDAAVEALTGFHLHRGALAAMHRPAMDDVSQLVAKARRIVVIEDVVDHTNVC 176

Query: 138 ---------------------LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                                L+ + D  N+G+  R+A A   D ++ +   +       
Sbjct: 177 GPKLAHPEPAAEPRRRSRIAVLEGLVDHTNVGSAFRNAAALGLDAVLVSPTCADPLYRRA 236

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKND--KIALIL 233
            + + G +  +P+ RI      +  + + G+   G++  +    L++ +  D   +AL+ 
Sbjct: 237 VRVSMGTVFQVPWTRIPEWEKGIAGLKAAGYVLAGMTLGEGAITLDELVAEDHENLALVF 296

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G EG G+ P+T         + M G + +LN
Sbjct: 297 GTEGHGITPETDALLDRRVTIPMMGGVDSLN 327


>gi|118497361|ref|YP_898411.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
           U112]
 gi|195536050|ref|ZP_03079057.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|118423267|gb|ABK89657.1| rRNA methyltransferase [Francisella novicida U112]
 gi|194372527|gb|EDX27238.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
          Length = 250

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 100/264 (37%), Gaps = 24/264 (9%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +     +   + G+     AL   P ++I  +L T+ A     
Sbjct: 6   QKLYKEIKKLHSSQGRKK----SQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                        +  +  + +  +    QG+ +       P L+ +  +   ++VLD +
Sbjct: 62  PLNKK------YIITEKDFEAL-SQTQNPQGVLILA---EKPKLEELSFDDDFILVLDRI 111

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--L 199
            DP NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +   +
Sbjct: 112 QDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFGYITNLAELKNI 171

Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            K+          +         +E K     L+ G E  G+      +      +    
Sbjct: 172 AKLQQRKIWL--TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLS 226

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            I++LNV+ AA + L+       +
Sbjct: 227 DIESLNVAQAATIYLFEGLRQRLR 250


>gi|303236426|ref|ZP_07323015.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
 gi|302483398|gb|EFL46404.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
          Length = 186

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 12/172 (6%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L        R   L++VLD V   HN+G++ RS+ AF  + I      +   +A 
Sbjct: 7   IEMNRLSLEEFKQSRKMPLIVVLDDVRSLHNVGSVFRSSDAFRVEAIYLCGITATPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-----------LSSDSKKPLEQEI 224
           + K+A GA + + +       +A++++ + G+                 S    P+  E 
Sbjct: 67  IHKTALGAEDSVDWQYFPTTEEAIEQLKANGYYVYSVEQVEGSTKLQTLSQQVAPITSEQ 126

Query: 225 KNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++K  A++LG E KG++    + + +   +   G   +LNVS  A + ++ 
Sbjct: 127 TSEKRYAVVLGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSVTAGIVIWE 178


>gi|269115011|ref|YP_003302774.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322636|emb|CAX37371.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 241

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 35/264 (13%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S +D    K       YKK+ +     +   + +   + G H V  A+          
Sbjct: 3   ITSTQDPKILK-------YKKLLT----PKGRQEQQLFIVEGYHLVKEAIEANI------ 45

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
                 +  L+++  L +    + V    I K +      Q +           L+   N
Sbjct: 46  -----VIDILEFNDILTYKNSTQ-VTRAII-KTLSTTQTPQNIIAICK---IQNLNIKAN 95

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              ++ L+ + DP NIG I R A +F  D +I         +  + +S+ GA+  +  I+
Sbjct: 96  K--IIALNKLQDPGNIGTIFRLAKSFGFDSVIVENI--DIYNEKIIRSSQGAMFSLNIIK 151

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            ++L+  L       F     + +  S K  + + +N KI ++LG EG G+  K  + + 
Sbjct: 152 TNDLSKELSAFKKDDFLVYSTTLNKNSIKLNDIDFRNKKIVIVLGNEGNGIDEKIIDLSD 211

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
              ++ +    ++LNV+   A+ +
Sbjct: 212 FNVYVPI--EFESLNVACCGAIIM 233


>gi|288801847|ref|ZP_06407289.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
 gi|288335889|gb|EFC74322.1| RNA methylase, SpoU family [Prevotella melaninogenica D18]
          Length = 191

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 75/185 (40%), Gaps = 20/185 (10%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L T  +   +L+  + +    L++VLD V   HN+G++ RSA AF  + +      +   
Sbjct: 4   LRTIEMNRLSLEEFKEADKLPLIVVLDDVRSLHNVGSVFRSADAFRVEAVYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKI-- 229
           +A + K+A G  + + +       DA++++H  G     +   +    L++    +    
Sbjct: 64  NAEIHKTALGGEDSVDWRYFERTEDAIEELHHQGVFVYSVEQVEGSTKLQELNTENPTNH 123

Query: 230 --------------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                         A++LG E KG++    + +     +   G   +LNVS    + ++ 
Sbjct: 124 QHPTPNTQHPVIHYAIVLGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTTGIVIWE 183

Query: 276 TQNHF 280
                
Sbjct: 184 FARQL 188


>gi|288925851|ref|ZP_06419781.1| RNA methylase, SpoU family [Prevotella buccae D17]
 gi|288337275|gb|EFC75631.1| RNA methylase, SpoU family [Prevotella buccae D17]
          Length = 178

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 70/163 (42%), Gaps = 3/163 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E + L            L++VLD+V   +N+G++ RS  AF  + I      +   +A 
Sbjct: 7   IEMSRLSVEEFKEAPKLPLVVVLDNVRSLYNVGSVFRSGDAFRVESIYLCGITATPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALI 232
           + K+A G  + + +   +   +A+ ++ + G+    +         Q ++ +   + A++
Sbjct: 67  IHKTALGGEDSVDWKYFATTEEAVNQLKADGYFVYSIEQVEGSTKLQRLETEQGQRYAVV 126

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            G E KG+     +       +   G   +LNVS  A + ++ 
Sbjct: 127 FGNEVKGVSQSVVDLCDGCLEIPQFGTKHSLNVSVTAGIVIWE 169


>gi|312195570|ref|YP_004015631.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
 gi|311226906|gb|ADP79761.1| tRNA/rRNA methyltransferase (SpoU) [Frankia sp. EuI1c]
          Length = 308

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 90/260 (34%), Gaps = 34/260 (13%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDK 103
                  G   V AAL     ++  L   ++A AR             PV+ V       
Sbjct: 30  EGRFLAEGFQAVEAALATG--RLTDLFVGESAAARFGELVAKVAGTGVPVRPVTDPAAAA 87

Query: 104 IVGKEAVHQGLA--LETAPLLSPTLDAVRNSQ-----------------------LLMVL 138
           +  +    QGL             L  +R                          L+ V 
Sbjct: 88  L-SETVTPQGLVGVATLPATRLADLTGLRGRPAGEATRPAGGTGQLGQAGMVRPSLVAVC 146

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
              NDP N G ++R+A A   D ++              +S++G+L H+P +   +L  A
Sbjct: 147 VAANDPGNAGTVIRTADAAGADAVVFAGDGVDPFGGKCVRSSAGSLFHLPVVMEPDLGVA 206

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +  + + G + +  S    + L +       +     + G E  GL P     A ++  +
Sbjct: 207 VDWLRANGCRVVATSGHGARDLYEAADAGELDGPTGWLFGNEAHGLSPDALAAADAVLRV 266

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LN++ A A+ LY
Sbjct: 267 PVYGQAESLNLAVATALCLY 286


>gi|258654263|ref|YP_003203419.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258557488|gb|ACV80430.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 271

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 8/217 (3%)

Query: 68  IFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
           + +L  T  A AR        +     V  V  +    +       QGL +  A  ++  
Sbjct: 49  VLELYLTAAAGARHTELVRRAYAAGITVTQVTDRAAASLSDA-VSPQGLVVRCALPMTSV 107

Query: 126 LDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            D +  S  L+ VL   +DP N G ++R A A   DG+I     +   +A   ++++G++
Sbjct: 108 ADLLAGSPKLVAVLVQTSDPGNTGTVIRLADAAGADGVIVAGEAADPWNAKAIRASAGSV 167

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGL 240
            H+P +   +    + ++ + G   +  +  +   L     + I +   A + G+E  GL
Sbjct: 168 FHLPVVPARDPAALIGELTAAGLSVLASTGQADVELGSAQAEGILDLPTAWLFGSEAHGL 227

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +    A     + + G  ++LN++ AAAV LY + 
Sbjct: 228 PAEIIGRADERIRIPIYGRAESLNLAAAAAVCLYASA 264


>gi|262341267|ref|YP_003284122.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272604|gb|ACY40512.1| SpoU rRNA methylase family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 267

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 98/263 (37%), Gaps = 15/263 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            + + K +    +K  +   P    + GV     A+        ++   +      D   
Sbjct: 8   QNTEIKDLIKVYKKKNY---PNGFLVEGVKEFEMAIEGNFLP-QKIFICEKIFHEYDMIK 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP---LLSPTLDAVRNSQLLMVLDHVN 142
           +      +  +    I + +       G+         +     + + N+ L+++LD + 
Sbjct: 64  SYH---TMTCLISMKIFRKLAYRENSGGIIAFFREKSIIDKLINEKITNNSLILILDGIE 120

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
            P NIGA+LR+A A     II     +   ++ + + + G++       I  +   +  +
Sbjct: 121 KPGNIGAMLRTADAAGIHIIILCNMKTHIYNSNVIRCSLGSVFTRKIF-IEKMGSIISWL 179

Query: 203 HSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                + +G        +K   + ++    +A+I G+E KG+       A  +  + M G
Sbjct: 180 QENKVKIVGTGFYNHQKAKNLYKTKLNYSNLAIIFGSENKGISNIWFNIANKIITIPMFG 239

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            + +LNVS+A ++ +Y       
Sbjct: 240 NVDSLNVSHAMSIIIYEIIRQRN 262


>gi|260911434|ref|ZP_05918024.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634433|gb|EEX52533.1| TrmH family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 257

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 15/249 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            +H          G   V   L     K+  L+AT    A       L     + TV   
Sbjct: 17  KKHRDAEGVFVAEGPKVVGELLATMPAKL--LVATPQWQAP----VALHASTELITVNDD 70

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTL--DAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + K+    A  Q +A+         +  D V  ++L ++LD V DP N+G I+R A  F
Sbjct: 71  ELQKLSFMRAPQQVMAVFPKFSQQGDVLKDCVETNELTLMLDGVQDPGNLGTIVRLADWF 130

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
               ++ +   +   +  + ++  G++  +       L   L  +    F   G   D  
Sbjct: 131 GIRHVVCSLDTADVYNPKVVQATMGSIARVKVSYTP-LEPLLDALP-PSFPVYGTLLDGD 188

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVAL 273
               Q++    I +++G EGKGL    ++       +          ++LNV+ A A+  
Sbjct: 189 NIYGQQLCAHGI-IVMGNEGKGLSTSVRQRVNHKLLIPHFATGEQRAESLNVAIATAIVC 247

Query: 274 YITQNHFAK 282
              +   A+
Sbjct: 248 AEFRRQGAQ 256


>gi|192359547|ref|YP_001983124.1| rRNA methylase [Cellvibrio japonicus Ueda107]
 gi|190685712|gb|ACE83390.1| rRNA methylase [Cellvibrio japonicus Ueda107]
          Length = 240

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 99/251 (39%), Gaps = 16/251 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D KK+     + ++ +Q  +  + G H V   L   ++    LL ++  L   D   +  
Sbjct: 5   DIKKLH----QKKYRNQFGHFLVEGEHLVLE-LQKAAQLSPALLHSQ--LLVTDKYQHWQ 57

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            PF  + +  + + +I   +     +A+   P +     A+ + +  + L  + DP N+G
Sbjct: 58  SPFETRVISDKQMAQIADTQTPPGIVAVAPVPDIPG---ALVDGERAIYLHEIQDPGNLG 114

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ILR+   F     + +       +  + +S+ GA+ H+P      L  +L  +     +
Sbjct: 115 TILRTLAWFGGFRCLLSPGSVDPYNPKVVRSSMGAIFHVPL----ELDVSLAHLAERFAR 170

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHLHMPGIIKALNVSN 267
              L  D            +   + G E +G+  +  +     M ++   G I++LN++ 
Sbjct: 171 IACLDMDGVAVRNDAFAGHR-CYVFGNEARGVPREQLQNFDLHMFNIPGSGAIESLNLAT 229

Query: 268 AAAVALYITQN 278
           A  + +Y    
Sbjct: 230 AVNICVYELMR 240


>gi|160888268|ref|ZP_02069271.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492]
 gi|156862214|gb|EDO55645.1| hypothetical protein BACUNI_00678 [Bacteroides uniformis ATCC 8492]
          Length = 253

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 92/248 (37%), Gaps = 14/248 (5%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           ++ ++    +     G   V   L +   +   LLAT   L+R    + +        V 
Sbjct: 15  EQKKNRKADKVFLAEGPKLVGDLLGHFPCQF--LLATSEWLSRNRPLSTVADA---TEVS 69

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            + + +    +   Q LA+   P     +  + +S L + LD V DP N+G I+R A  F
Sbjct: 70  EEELSRASLLKTPQQVLAVFRQPDEETDISVISHS-LCLALDDVQDPGNLGTIVRLADWF 128

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
             + I  +       +    ++  G +  +       L + ++ +        G   D +
Sbjct: 129 GIEHIFCSPNTVDIYNPKTVQATMGGIARVRLHYTP-LPEFIRSLKD--IPVYGTFLDGE 185

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVAL 273
               Q +  + + +++G EG G+  + +       ++          ++LNV+ A AV  
Sbjct: 186 NMYGQPLSKNGL-IVMGNEGNGIGKEVEALINRKLYIPNYPASRETSESLNVAIATAVVC 244

Query: 274 YITQNHFA 281
              +   A
Sbjct: 245 AEFRRQAA 252


>gi|262172137|ref|ZP_06039815.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
 gi|261893213|gb|EEY39199.1| RNA methyltransferase TrmH family [Vibrio mimicus MB-451]
          Length = 244

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 95/242 (39%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L + + K+  + AT   LA     AN+   +
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LASSTLKVQNIFATAEFLAEH---ANVLADY 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P+++  +   L++ LD V+DP N+G I+
Sbjct: 64  ECTEAALDDLTKVSTLVSNN----AAIAVVEIPSIEVPKAQGLMIGLDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHKTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|332184159|gb|AEE26413.1| rRNA methyltransferase [Francisella cf. novicida 3523]
          Length = 250

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 22/263 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +         + G      AL   P ++I  +L T+   +   
Sbjct: 6   QKLYKEIKKLHSSQGRKKSL----YYVIEGFRCAQEALKRLPQQQIIAILVTEKTDSPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                        +  +  + +  +    QG+ +      S  L+   +   ++VLD + 
Sbjct: 62  ALDKK------YIITEKDFEAL-SQTQNPQGILILAEKPNSQELNF--DDDFILVLDRIQ 112

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQ 200
           DP NIG ILR+A+A     II         +    ++  GA   + +  +  L D   + 
Sbjct: 113 DPGNIGTILRTAIAVGLKEIILINGTVDPFNPKAIRAGMGAQFSLKFSYLETLADLKNIS 172

Query: 201 KMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           K+          +         +E K     L+ G E  G+   +         +     
Sbjct: 173 KLQQRKIWL--TTPHQGVSCYAKEFKLANSILVFGEEANGIEDFSIG---EKTMIPTLSD 227

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
           I++LNV+ AA + L+       K
Sbjct: 228 IESLNVAQAATIYLFEGLRQRLK 250


>gi|299532311|ref|ZP_07045704.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
 gi|298719719|gb|EFI60683.1| tRNA/rRNA methyltransferase [Comamonas testosteroni S44]
          Length = 263

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 101/254 (39%), Gaps = 12/254 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H   AAL    +    + A        + 
Sbjct: 12  SRDNAFVKELRRLSQDSTAYRKQGQVWLEGDHLCRAALVRGLKPKLAVFAQSFWPQAPEE 71

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    V  +     D+I   E+  + G  ++           V+     +VLD V 
Sbjct: 72  WVQAAGKVVV--LADALFDEISALESPARMGYVMD-----WDAGVQVQPGVATVVLDRVQ 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    I+  K  +   S  + ++  GA   +  +  +++ D     
Sbjct: 125 DAGNVGSILRSASAFGFTQILALKGTAALWSQKVLRAGMGAHFGLHLVEAASVDDV---- 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  SS     + +       A  +G EG+G+     E A+    +  PG  ++
Sbjct: 181 QGLQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMASHRISIAQPGGEES 240

Query: 263 LNVSNAAAVALYIT 276
           LNV+ AAA+ L+ +
Sbjct: 241 LNVAAAAAICLHAS 254


>gi|328473290|gb|EGF44138.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus 10329]
          Length = 244

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S  + Q+ AT + L     + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLVVKQIFATADFLESHRQELS---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECVEASLDDLTKASTLVSNN----AAIAVVEIPNVKEPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLAEANLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + +   + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTDFSAEGI-LLMGSESHGVREEASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|299140862|ref|ZP_07034000.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
 gi|298577828|gb|EFI49696.1| RNA methyltransferase, TrmH family [Prevotella oris C735]
          Length = 250

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 95/245 (38%), Gaps = 15/245 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++  Q       G   V   L     +   L+AT+  LA    + + P    V  V   
Sbjct: 16  KKNREQTRLFIAEGHKLVEELL--AMSRAHTLVATQEWLA----NHSAPPADEVIEVTSD 69

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + K+   +   Q L L   P  +    A+  S L ++LD + DP N+G I+R A  F  
Sbjct: 70  ELRKVSLLQHPQQVLGLF--PFFASDTHAINTSTLSLMLDGIQDPGNLGTIIRIADWFGI 127

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + I  ++  +   +  + ++  G++  +     + L   L+++    F   G   +    
Sbjct: 128 NDIYCSQETADMYNPKVIQATMGSITRVRLHYGA-LEPMLRQLP-ADFPIYGTLLEGNDI 185

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALYI 275
             +++    + +I+G EG G+  + ++       +          ++LNV+ A A+    
Sbjct: 186 YSEQLSAHGL-IIMGNEGNGISAQVRQMVNCPLLIPNYPPNTPTAESLNVAIATAITCAE 244

Query: 276 TQNHF 280
            +   
Sbjct: 245 FRRRI 249


>gi|260220953|emb|CBA29034.1| hypothetical protein Csp_A10120 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 256

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 101/254 (39%), Gaps = 12/254 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R +   K+++  +  +    +    ++ G H  SAAL      +  +L    +   L  
Sbjct: 9   SRENTLLKELRKLSTDNTAYRKAGRFWIEGDHLCSAALARG--VVPSVLVVSESFMPLAP 66

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVN 142
                       +P     +I G E+       +   L+  P +  +      ++LD V 
Sbjct: 67  VEYARAAIKTVVIPDAVFREISGLESP-----AKVGFLVDLPEVVGIEPMAATVILDRVQ 121

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    ++  K  +   S  + ++  GA   +  I    L D L  +
Sbjct: 122 DAGNVGSILRSAGAFGFRQVLALKGSAALWSPKVLRAGMGAHFGLRLIEGLELQD-LDAL 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  SS     +++       A  +G EG+G+       A+  A +  PG  ++
Sbjct: 181 K---VPLVVTSSHQGDLVQKLDLPHPCAWAMGHEGQGVSEALMAKASVFARIGQPGGEES 237

Query: 263 LNVSNAAAVALYIT 276
           LNV+ AAA+ L+ +
Sbjct: 238 LNVAAAAAICLHAS 251


>gi|224010707|ref|XP_002294311.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220970328|gb|EED88666.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 253

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 34/248 (13%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N  R      A   A + +   A       V  V    ++ + G    HQG  L    
Sbjct: 8   LANNKRTFRS-SAKNEASSEILTLAQKIESLDVVEVDKGVLNTLCG-NRPHQGFVLRCGG 65

Query: 121 LLSPTLDAV----------RNSQLL-MVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRY 168
           L    L             ++  L+ + LD V DP N+GA+LRSA       GI+   + 
Sbjct: 66  LEFEPLRGSSSLPSASLAGKDGPLVWLALDEVVDPQNLGALLRSAYFLGGRVGILVCSKN 125

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKN 226
           S   +  ++ +++GALE +     SNL   L +    G++ +G ++D        +    
Sbjct: 126 SSPLTTTVSAASAGALEFMTVYSTSNLPKMLNRAREDGWRVLGAAADIPDSGGAARSETG 185

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLH----MP----------GIIKALNVSNAAAVA 272
               L+LG+EG+GLR     + +    +     M             + +LNVS    + 
Sbjct: 186 KPTILVLGSEGRGLRTWVARSCSGFVKVPGGLNMAASDNDEDATQAGVDSLNVSVTGGIL 245

Query: 273 LYITQNHF 280
           L+    HF
Sbjct: 246 LW----HF 249


>gi|257146503|emb|CAX30790.1| tRNA (Guanosine-2'-O-)-methyltransferase [SBR proteobacterium]
          Length = 239

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L++V+ PHNI A++R+A A     I     +  + S  L+ +A+G+   +
Sbjct: 14  AMRQPDLTVCLENVHKPHNISAVIRTADAVGIPQIHA--IWCKNSSKSLSAAAAGSNHWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
                + + +A+    + G Q +    +++     Q        +ILG E   +  +   
Sbjct: 72  KIKTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A    H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|153838665|ref|ZP_01991332.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
 gi|149747943|gb|EDM58809.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ3810]
          Length = 244

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 92/243 (37%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S  + Q+ AT + L     + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLVVKQIFATADFLESHRQELS---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECVEASLDDLTKASTLVSNN----AAIAVVEIPNVKEPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLAEANLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + E   + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTEFSAEGI-LLMGSESHGVREEASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|258648108|ref|ZP_05735577.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
 gi|260851979|gb|EEX71848.1| RNA methyltransferase, TrmH family [Prevotella tannerae ATCC 51259]
          Length = 249

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 19/258 (7%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDA 85
             + K +    +K R           G   V   L         LLAT + L  +  W A
Sbjct: 4   RAEIKWLHGLTRK-RQRDAEGLFIAEGPKVVGDLL--ALFPCRLLLATADFLQSKAQWPA 60

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V+ +    + ++   +A  Q +A+   P   P        +L + LD + DP 
Sbjct: 61  A-----EVRELSASELVRVSLLQAPQQVVAVFEKPTPVPW---QPTDELALALDGLQDPG 112

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  F    I+ +   + + +  + ++  GAL  I    + +L +AL K+   
Sbjct: 113 NVGTIIRLADWFGIHNILCSPTTADAFAPKVVQATMGALGRINLHYV-DLCEALAKLPVE 171

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIK 261
                G   D     EQ +    + +I+G EG+G+ P  +   +    +          +
Sbjct: 172 T-PIYGTFLDGPNIYEQSLDTKGL-IIMGNEGQGISPAVERFVSKRLFIPRFPLNATGSE 229

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ A A+     +  
Sbjct: 230 SLNVAMATAIVCAEFRRR 247


>gi|237741818|ref|ZP_04572299.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229429466|gb|EEO39678.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 258

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 107/278 (38%), Gaps = 29/278 (10%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I SLK     K R +  + K +    +   +   PE + +         
Sbjct: 3   MEIIESKENKLIKSLKKLKQKKYRDS--ENKFLAEGYKFLDYNYFPETIII--------- 51

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  IFQ        +   ++           V  +  +++  +E   QG+ +    
Sbjct: 52  ----REDIFQ--------SNFYFEKINKFTCKKIVVIRKVFEELSSQE-NSQGIIIL--- 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D    S  L++LD V+DP N+G I+R   A +   II TK    + +  + ++ 
Sbjct: 96  YNKKTNDLKSLSNNLVILDDVSDPGNLGTIIRICDATNFKDIILTKGTVDAYNEKVIRAT 155

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG 239
            G++ ++    +   ++ +  +    +  I    D +     +    +K A+I G EG G
Sbjct: 156 MGSILNVNLYYLEK-SEIINFLKENNYSIISTYLDKAAISYNKIKLKEKNAIIFGNEGNG 214

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +             + +    ++LNV+ A  + LY  +
Sbjct: 215 ISDDFINITNYKTIIPILSNTESLNVAVATGIILYKFR 252


>gi|84495467|ref|ZP_00994586.1| putative rRNA methylase [Janibacter sp. HTCC2649]
 gi|84384960|gb|EAQ00840.1| putative rRNA methylase [Janibacter sp. HTCC2649]
          Length = 272

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 85/219 (38%), Gaps = 5/219 (2%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATK---NALARLDW-DANLPHPFPVKTVPPQTIDKIV 105
            + G   +  AL+   R      + +   +A  +L   D           V     +K+ 
Sbjct: 36  VVEGFEELGLALDAGVRPRTVFYSPELMLDAAEQLKVVDGARAAGVETIKVSRSAFEKVA 95

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            +E     +AL  +         + +S LL+V + +  P N+GA+LR+A A   D +I  
Sbjct: 96  YREGPDGFIALVPSVRAGLADLKLPSSPLLLVCEGLEKPGNLGAMLRTADAAGVDAVIAV 155

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
              +   +  + + + G +  IP    + L + +  +   G + I  + D++        
Sbjct: 156 DPVTDWGNPNVVRGSKGTVFSIPVASAT-LGETIDWLREGGIRLIATTPDTETLHTDADL 214

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              +A+ +G E  GL  +    A     + M G + +LN
Sbjct: 215 TGGVAIAVGTEKFGLTDEALRAADLRVRIPMHGQVNSLN 253


>gi|326517717|dbj|BAK03777.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 351

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 8/179 (4%)

Query: 106 GKEAVHQGLALETAPL-LSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFS 158
           G E   Q +     P  L P  D +R +       + +V++ + D  N+ A  RSA A  
Sbjct: 120 GVEVTSQEVVDVLEPYILEPRRDRIRRAVQSRSYSVCLVVEGLTDFGNVSAAFRSADALG 179

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +                 + GA + +     S+  +    +   G++    S  S  
Sbjct: 180 VQSVHVISCEDNKRYRDNRHVSMGAEKWLDIELWSSPAECFDALKKRGYRIACTSLGSDS 239

Query: 219 -PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +     +   A+++G E  G+     + +     + M G++ + NVS AA + ++  
Sbjct: 240 VSVYDMDWSHPTAIVVGNETMGISDVALKLSDMHCSVPMKGMVDSFNVSVAAGILMHHA 298


>gi|56421995|ref|YP_149313.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|56381837|dbj|BAD77745.1| rRNA methylase [Geobacillus kaustophilus HTA426]
          Length = 247

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIP 188
           R   + ++++ V+DPHN  A+LR+A AF    +      +P S + ++ + A    + + 
Sbjct: 45  RTRYITVLIEAVDDPHNQAAVLRTAEAFGVQDVHIVTGKAPFSPNRLVTRYAD---QWLT 101

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++  A+  + S G+Q        +  P+     +   AL+ G E  G+  +    
Sbjct: 102 LHHKPDIKTAIADLKSQGYQVYASYLGEETIPVSDIDLSQPTALLFGNEHSGVSEEALRL 161

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY---ITQNHFA 281
           A     + M G +++ N+S AAA+ALY         A
Sbjct: 162 ADGTFVIPMYGFVQSFNISVAAALALYDVTERARRQA 198


>gi|289665109|ref|ZP_06486690.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 197

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 6/184 (3%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA-----VRNSQLLMVLDHVNDPHNIG 148
           + V    + K+    A H+G+  E   +   +L        +   L + LD V +PHN G
Sbjct: 2   RVVEEADLGKLAAS-AHHEGIVAEVLRVTPQSLQEWLAALPQGPVLALWLDGVGNPHNFG 60

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           A+LRS+  F   G++     +   S   A+ A G  E +P +++ +   A+ ++   GF 
Sbjct: 61  AMLRSSAHFGVAGLLLPAASTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFA 120

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                 D  + +       ++  ++GAE +G+             +   G +++LNV++A
Sbjct: 121 IAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASA 180

Query: 269 AAVA 272
            AV 
Sbjct: 181 TAVF 184


>gi|332295141|ref|YP_004437064.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
 gi|332178244|gb|AEE13933.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
          Length = 253

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 99/251 (39%), Gaps = 12/251 (4%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL----ATKNALARLD 82
           + D+       +  R     + +F  GVH +  AL       + L+      +    ++ 
Sbjct: 2   NVDFASKSKIKELLRMKKSGQFIFFEGVHALEEALLANYIPDYVLIKDVDILEKKFFKVK 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                        V    I ++  +      +++   P               + LD + 
Sbjct: 62  IFEIFLERLKFLVVKEDAIKRLSSESTPTGIISVGNLPKEKDF-----GPFPWVYLDKIQ 116

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G ILRS++AF C GI  ++      +  + +S++GA   +P+ R  N +D ++ M
Sbjct: 117 DPGNLGTILRSSLAFGCGGIFLSEDSCNIYNPKVIRSSAGAFFKVPF-RKRNFSDIVRDM 175

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                +    S  +K+P      + +  L+ G EG+G+  + +  +    ++     +++
Sbjct: 176 -DTSLRVFSFSPRAKEPFFLHNYDGRCLLVFGNEGRGISSEIESKSYKRVYIPTQ-NVES 233

Query: 263 LNVSNAAAVAL 273
           LNV+    + L
Sbjct: 234 LNVAMCVNIVL 244


>gi|187931908|ref|YP_001891893.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254369390|ref|ZP_04985402.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122340|gb|EDO66480.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|187712817|gb|ACD31114.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 250

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 100/264 (37%), Gaps = 24/264 (9%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +     +   + G+     AL   P ++I  +L T+ A     
Sbjct: 6   QKLYKEIKKLHSSQGRKK----SQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                        +  +  + +  +    QG+ +       P L+ +  +   ++VLD +
Sbjct: 62  PLNKK------YIITEKDFEAL-SQTQNPQGVLILA---EKPKLEQLSFDDDFILVLDRI 111

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--L 199
            DP NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +   +
Sbjct: 112 QDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFGYITNLAELKNI 171

Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            K+          +         +E K     L+ G E  G+      +      +    
Sbjct: 172 AKLQQRKIWL--TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLS 226

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            I++LNV+ AA + L+       +
Sbjct: 227 DIESLNVAQAATIYLFEGLRQRLR 250


>gi|281424397|ref|ZP_06255310.1| RNA methyltransferase, TrmH family [Prevotella oris F0302]
 gi|281401666|gb|EFB32497.1| RNA methyltransferase, TrmH family [Prevotella oris F0302]
          Length = 250

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 15/257 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +   K     Q  ++  Q       G   V   L     +   L+AT+  L         
Sbjct: 4   KTKTKFIKSLQLKKNREQTRLFIAEGHKLVEELL--AMSRAHTLVATQEWLDSHS----A 57

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P    V  V    + K+   +   Q L L   P  +    A+  S L ++LD + DP N+
Sbjct: 58  PPADEVIEVTSDELRKVSLLQHPQQVLGLF--PFFASDTHAINTSTLSLMLDGIQDPGNL 115

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  F  + I  ++  +   +  + ++  G++  +     + L   L+++    F
Sbjct: 116 GTIIRIADWFGINDIYCSQETADMYNPKVIQATMGSITRVRLHYGA-LEPMLRQLP-ADF 173

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKAL 263
              G   +      +++    + +I+G EG G+  + ++       +          ++L
Sbjct: 174 PIYGTLLEGNDIYNEQLSAHGL-IIMGNEGNGISAQIRQMVNCPLLIPNYPPNTPTAESL 232

Query: 264 NVSNAAAVALYITQNHF 280
           NV+ A A+     +   
Sbjct: 233 NVAIATAITCAEFRRRI 249


>gi|257126058|ref|YP_003164172.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
 gi|257049997|gb|ACV39181.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
          Length = 256

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 85/211 (40%), Gaps = 6/211 (2%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             +++  ++     D    +     +  +     D+ V  +   QG+    +  L+   D
Sbjct: 45  FNKIIVKESKFEYFDEKYKISKHDNLTILKDNLFDE-VSTQENSQGIIFLYSKNLNTIED 103

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +   +++LD + DP N G I+R+ +A +   +I TK      +    ++    +  +
Sbjct: 104 IQGD---VVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKL 160

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
             I  +     ++ +++  +  I  +        E+    +  A I G EG G+     E
Sbjct: 161 NIIYET-PEKIVEFLNNKNYLKIATALHEDSISYEKIELRENNAFIFGHEGGGVSEYLIE 219

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +   A + + G I++LNVS A  + LY  +
Sbjct: 220 NSDIKAIIPIYGNIESLNVSVATGIFLYKMR 250


>gi|170743299|ref|YP_001771954.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168197573|gb|ACA19520.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 269

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 91/240 (37%), Gaps = 6/240 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPS--RKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           + R        F+     V   L +     +I  +L +   LA L          PV   
Sbjct: 22  RERDLVGRRGRFVAEGEVVLRVLLSGRARFRIESVLLSPERLASLRPALAALTDAPVYLA 81

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSA 154
           P   +  + G   +H+G+        +P  +++      LL+ L  + +  N+G + R+A
Sbjct: 82  PRAVMSALAGF-PIHRGVLAIGRSGETPPAESLVPPGPALLLGLVGLANHDNVGGLFRNA 140

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            AF  D ++              + ++G    +P+ R+ +    L      G   + L+ 
Sbjct: 141 AAFGADAVLLDAATCDPLYRKAIRVSAGTCLTLPFARLPDGEALLALCERHGIVPLALTP 200

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + + Q     +  L+LG EG GL       A     + M   + +LNV+ A AVAL+
Sbjct: 201 GGGEEIAQLPPLPRAMLLLGTEGTGLPDALMARA-RRVRIAMAPGVDSLNVAAAGAVALH 259


>gi|28897728|ref|NP_797333.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260363841|ref|ZP_05776596.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
 gi|260876899|ref|ZP_05889254.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           AN-5034]
 gi|260897959|ref|ZP_05906455.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902161|ref|ZP_05910556.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
 gi|28805941|dbj|BAC59217.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085459|gb|EFO35154.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           Peru-466]
 gi|308093903|gb|EFO43598.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus
           AN-5034]
 gi|308108291|gb|EFO45831.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus AQ4037]
 gi|308113897|gb|EFO51437.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus K5030]
          Length = 244

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S  + Q+ AT + L     + +    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLVVKQVFATADFLESHRQELS---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P +   +   L++ LD V+DP N+G I
Sbjct: 63  FECVEASLDDLTKASTLVSNN----AAIAVVEIPNVKEPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLAEANLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + +   + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTDFSAEGI-LLMGSESHGVREEASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|171742772|ref|ZP_02918579.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
           27678]
 gi|283456178|ref|YP_003360742.1| methylase [Bifidobacterium dentium Bd1]
 gi|306822630|ref|ZP_07456008.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309800805|ref|ZP_07694937.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|171278386|gb|EDT46047.1| hypothetical protein BIFDEN_01886 [Bifidobacterium dentium ATCC
           27678]
 gi|283102812|gb|ADB09918.1| rRNA methylase [Bifidobacterium dentium Bd1]
 gi|304554175|gb|EFM42084.1| SpoU family rRNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308222341|gb|EFO78621.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 290

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 88/268 (32%), Gaps = 29/268 (10%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-----KNALARLDWD 84
            +++    ++ +   +     + G  +V   L      +  L         +A    D  
Sbjct: 16  IRRVAELAER-KGRKRAGRFLVEGPQSVRELLTWHPDIVRDLYVEAIGTEPDAPFLTDTV 74

Query: 85  ANLP-----HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLL 135
           A +          V  V    +  +       QG+            +  +++  ++ ++
Sbjct: 75  AQMAGKAMQAGAYVHKVTHAVMRHMSSDA---QGVLAVADMQGFLDAAGNVESFGDNAMV 131

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
                V DP N G ++RSA A  C  ++         +  + +S +G+L H+P + +   
Sbjct: 132 AAFWQVRDPGNAGTVIRSADAAGCAAVVFVDECVDIFNPKVIRSTAGSLFHLPVLTMG-T 190

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----------LILGAEGKGLRPKTQ 245
                                      E   D +A          +I G E +GL  +  
Sbjct: 191 EAFFAWCDERNLAIYAADVYGTDSRPPEPLTDVLAEPSTLAGAKTMIFGNEARGLTREVL 250

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +    +  + + G  ++LN+  +AAV L
Sbjct: 251 DRTDRIVSIPIYGKAESLNLGTSAAVML 278


>gi|221066100|ref|ZP_03542205.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
 gi|220711123|gb|EED66491.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni KF-1]
          Length = 263

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 12/254 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H   AAL    +    + A        + 
Sbjct: 12  SRDNAFVKELRRLSQDSTAYRKQGQVWLEGDHLCRAALVRDLKPKVAVFAQSFWPQAPEE 71

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    V  +     D+I   E+  + G  ++            ++    +VLD V 
Sbjct: 72  WVQAASKVVV--LADALFDEISSLESPARMGYVMD-----WDAALQAQSGIATVVLDRVQ 124

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    I+  K  +   S  + ++  GA   +  +  +++ D     
Sbjct: 125 DAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHFGLHLVEAASVEDV---- 180

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            +     +  SS     + +       A  +G EG+G+     E A     +  PG  ++
Sbjct: 181 KALQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGEALMEMAQRRISIAQPGGEES 240

Query: 263 LNVSNAAAVALYIT 276
           LNV+ AAA+ L+ +
Sbjct: 241 LNVAAAAAICLHAS 254


>gi|86141309|ref|ZP_01059855.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831868|gb|EAQ50323.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 237

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 23/246 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K + S  QK ++  Q     + G+  +   L++    +  L A +      D      
Sbjct: 6   QIKLITSLAQK-KYRQQNALFVVEGIKGIREFLDSSY-VLHSLYALEGVFEDQDT----- 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  V P  + KI   +   + LAL   P     +     S   +VLD V DP N+G
Sbjct: 59  -----TEVSPAELKKISFLKTPQKALALFEIPKQRLEI----KSGFQLVLDEVRDPGNLG 109

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            ++R    +  + +I +++     +  + ++  G+L  +  +     TD    +      
Sbjct: 110 TLIRLCDWYGIEHLICSEQTVDCFNPKVVQATMGSLTRVNLVY----TDLETYLSKQKLP 165

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG--IIKALNVS 266
             G   D +     ++  + I L+LG E  G+     E       +   G    ++LNV+
Sbjct: 166 VYGAFMDGENVYRSQLPEEAI-LVLGNEANGVSAAVSEKIQQKISIPQFGSSTTESLNVA 224

Query: 267 NAAAVA 272
            A A+ 
Sbjct: 225 IAGAIL 230


>gi|149187261|ref|ZP_01865559.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
 gi|148838797|gb|EDL55736.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
          Length = 246

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++ +QK +         + G   V   L   S  I  + AT   LA           
Sbjct: 8   KLLRALSQK-KQRKAHGLFLVEGEKNVLELLET-SMVIKHVFATSEFLASNREALQRVEC 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V             A +  P  +      +++ LD V+DP N+G I
Sbjct: 66  IEASLEELTKASSLVSNN-------AAVAVVAIPQTEIPAAKGMMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +    ++  G+   +       L D    +        
Sbjct: 119 IRIADWYGIKHIVASTDCADPYNPKTIRATMGSFGRVQVT----LLDLPSYLEQASLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   +     + I L++G+E  G+RP   +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGENVHKMTFSPEGI-LLMGSESHGVRPDAAQYVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|229496035|ref|ZP_04389759.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317127|gb|EEN83036.1| SpoU rRNA methylase family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 182

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L      +     L +VLD+V   +N+G++ R+A AF  +G+I           ++
Sbjct: 8   EMQRLDVEQFRSEEKVPLTLVLDNVRSLNNVGSLFRTADAFRLEGLILCGITGLPPHPMI 67

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALIL 233
            K+A GA   + +    +  +A++++ S G++   L   +     +E      +++AL++
Sbjct: 68  HKTALGAELSVAWEHAESTLEAVEQLRSKGYKIWALEQATDSLCPEESPLTPPERVALVV 127

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G E  G+             +   G   +LNVS +A +A+Y
Sbjct: 128 GNEVHGVADDVIACVDRCIEIPQYGTKHSLNVSVSAGIAIY 168


>gi|282879810|ref|ZP_06288539.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
 gi|281306320|gb|EFA98351.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
          Length = 257

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 100/250 (40%), Gaps = 15/250 (6%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPV 93
           +  +           G   V   L+    +   + AT + L  +    +L H       +
Sbjct: 14  KSKKGRVAQGTFIAEGPKVVGDLLST--FQPTMMFATPHWLQDIHNQESLTHLQQMGVQI 71

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           +TV    + KI  ++   Q + L    +    L    + QL++ LD + DP N+G I+R 
Sbjct: 72  ETVTNDELTKISCQQ-HPQDV-LCVFEMRKSHLAFDPSRQLILALDDIQDPGNLGTIVRI 129

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F+   I+ ++  +   +  + ++  G+L  +  + + +L + +++ H+  F   G  
Sbjct: 130 ADWFAIPTILCSENTADIYNPKVVQATMGSLARVNVVYL-DLENYIRQ-HASEFPVYGTL 187

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAA 269
            D  K + QE       +++G EG G+    +       ++          ++LNV+ A 
Sbjct: 188 LDG-KDIYQENLGGHGLIVMGNEGNGISAAIRTFVNKPLYIPNFAKSANRAESLNVAIAT 246

Query: 270 AVALYITQNH 279
           A+     +  
Sbjct: 247 AITCSEFRRR 256


>gi|264679352|ref|YP_003279259.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
 gi|262209865|gb|ACY33963.1| tRNA/rRNA methyltransferase (SpoU) [Comamonas testosteroni CNB-2]
          Length = 274

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 12/254 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K+++  +Q S    +   ++L G H   AAL    +    + A        + 
Sbjct: 23  SRDNAFVKELRRLSQDSTAYRKQGQVWLEGDHLCRAALVRGLKPKLAVFAQSFWPQAPEE 82

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                    V  +     D+I   E+  + G  ++           V+     +VLD V 
Sbjct: 83  WVLAAGKVVV--LADALFDEISALESPARMGYVMD-----WDAGVQVQPGVATVVLDRVQ 135

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    I+  K  +   S  + ++  GA   +  +  ++    + ++
Sbjct: 136 DAGNVGSILRSASAFGFTQIVALKGTAALWSQKVLRAGMGAHFGLHLVEAAS----VDEV 191

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                  +  SS     + +       A  +G EG+G+     E A     +  PG  ++
Sbjct: 192 QGLQVPLVVTSSHQGTLIHEADLPWPCAWAMGHEGQGVGDALMEMARHRISIAQPGGEES 251

Query: 263 LNVSNAAAVALYIT 276
           LNV+ AAA+ L+ +
Sbjct: 252 LNVAAAAAICLHAS 265


>gi|208779154|ref|ZP_03246500.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
 gi|208744954|gb|EDZ91252.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
          Length = 250

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 99/264 (37%), Gaps = 24/264 (9%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +         + G+     AL   P ++I  +L T+ A     
Sbjct: 6   QKLYKEIKKLHSSQGRKKSL----YYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                        +  +  + +  +    QG+ +       P L+ +  +   ++VLD +
Sbjct: 62  PLNKK------YIITEKDFEAL-SQTQNPQGVLILA---EKPKLEELSFDDDFILVLDRI 111

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--L 199
            DP NIG ILR+A+A     +I         +    ++  GA   + +  I+NL +   +
Sbjct: 112 QDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFSYITNLAELKNI 171

Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            K+          +         +E K     L+ G E  G+      +      +    
Sbjct: 172 AKLQQRKIWL--TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLS 226

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            I++LNV+ AA + L+       +
Sbjct: 227 DIESLNVAQAATIYLFEGLRQRLR 250


>gi|323496165|ref|ZP_08101223.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
 gi|323318442|gb|EGA71395.1| RNA methyltransferase, TrmH family [Vibrio sinaloensis DSM 21326]
          Length = 244

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 95/243 (39%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N +  + Q+ AT   LA    +      
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LANSTLSVKQVFATAEFLAEYRAELG---G 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P+++  +   L++ LD V+DP N+G I
Sbjct: 63  FECIEASLDELTKASTLVSNN----AAIAVVEIPSVEIPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +   ++ +L   L++         
Sbjct: 119 IRVADWYGIKHIVASTDCADPYNPKTISATMGSFGRVTVSQL-DLPRYLEQ---SNLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + +   + I L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTDFAAEGI-LLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|320157988|ref|YP_004190366.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
 gi|319933300|gb|ADV88163.1| RNA methyltransferase, TrmH family [Vibrio vulnificus MO6-24/O]
          Length = 244

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N + K+ Q+ AT   L +   +      
Sbjct: 8   KLLRALGQK-KQRKALGLFLVQGEKNVLE-LANSTLKVKQVFATAEFLQQHAVELAGYEC 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V             A +  P ++  +   L++ LD V+DP N+G I
Sbjct: 66  IEASLDDLTKASTLVSNN-------AAIAVVEIPAIETPKAQGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEQANLPIY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +           I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHNMTFSAQGI-LLMGSESHGVREQASKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|255009330|ref|ZP_05281456.1| putative tRNA/rRNA methyltransferase [Bacteroides fragilis 3_1_12]
 gi|313147083|ref|ZP_07809276.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135850|gb|EFR53210.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 253

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/246 (21%), Positives = 97/246 (39%), Gaps = 16/246 (6%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +   + E +FL  G   V   L +   K   L AT   L     + +      V  V P+
Sbjct: 18  KKNRKEERVFLAEGPKLVGDLLGHFPCKF--LAATSEWL----REHSAVKAVEVIEVGPE 71

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    ++  Q LAL   P      + +RNS L + LD + DP N+G I+R A  F  
Sbjct: 72  DLSRASLLKSPQQVLALFEQPKYEIDTEVIRNS-LCLALDDIQDPGNLGTIIRLADWFGI 130

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + I  +       +    ++  G +  +    I+ L + +  +        G   D K  
Sbjct: 131 EHIFCSPNTVDVFNPKAIQATMGGIARVKVHYIA-LPELIHVLG--NVPVYGTFLDGKNM 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVALYI 275
            EQ +  + I +++G EG G+  + ++      ++          ++LNV+ A A+    
Sbjct: 188 YEQPLSKNGI-IVMGNEGNGIGAEVEKLVNRKLYIPNYPQERETSESLNVAIATAIVCAE 246

Query: 276 TQNHFA 281
            +   A
Sbjct: 247 FRRQAA 252


>gi|282877999|ref|ZP_06286807.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
 gi|281299834|gb|EFA92195.1| RNA methyltransferase, TrmH family [Prevotella buccalis ATCC 35310]
          Length = 168

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 3/160 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
               A     L++VLD V   +N+G++ RS  AF  + +      +      + K+A G 
Sbjct: 7   KDFKAADKLPLVVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPEIHKTALGG 66

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGL 240
            + + +   ++ T A++ +   G+    +      +K       ++ + A++ G E KG+
Sbjct: 67  EDSVDWRYFASATQAVEDLRERGYCVYAIEQVVGSTKLQHLSVDRSQRYAVVFGNEVKGV 126

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              T +       +   G   +LNVS  A + ++      
Sbjct: 127 HQDTVDACDGCLEIPQFGTKHSLNVSVTAGIVVWEFAQKL 166


>gi|169836038|ref|ZP_02869226.1| 23S rRNA methyltransferase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 256

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 85/211 (40%), Gaps = 6/211 (2%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             +++  ++     D    +     +  +     D+ V  +   QG+    +  L+   D
Sbjct: 45  FNKIIVKESKFEYFDERYGISEHDNLTILKDNLFDE-VSTQENSQGIMFLYSKNLNTIED 103

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +   +++LD V DP N G I+R+ +A +   +I TK      +    ++    +  +
Sbjct: 104 VKGD---VVILDDVQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKL 160

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
             I  +   + ++ ++   +  I  +        E+    +  A I G EG G+     E
Sbjct: 161 NIIYET-PENIVKFLNDKNYLKIATALHEDSISYEKIELRENNAFIFGHEGGGVSEYLIE 219

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +   A + + G I++LNVS A  + LY  +
Sbjct: 220 NSDIKAIIPIYGNIESLNVSVATGIFLYKMR 250


>gi|160915474|ref|ZP_02077685.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991]
 gi|158432594|gb|EDP10883.1| hypothetical protein EUBDOL_01482 [Eubacterium dolichum DSM 3991]
          Length = 243

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 21/246 (8%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDK 103
           E   + G  +V A L    R + +++     K+                ++      ID 
Sbjct: 2   ETYIVEGNISVKAVLQAKRRVVQRIVVDAKKKDKDTSYILRLAKKQGITIQAAQRAEIDT 61

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           +  +   H G+          +++ +  + +  L +++ V DP N G +LR+  A  CDG
Sbjct: 62  LA-QGKTHGGILAYCGERRYQSIEDIISKENVFLALVEGVEDPFNFGYVLRTLYAAGCDG 120

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II  KR   S    + ++++GA E+I      ++   +Q+M       +         L 
Sbjct: 121 IIVGKRNWTSAVNTVTRASAGASEYINIFVSEDMEATIQQMKKQQITFLCAQRKDAISLY 180

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--------MPGIIKALNVSNAAAVAL 273
                 K  + +G E +GL       +     +         M         + + A+  
Sbjct: 181 DYHFPKKCCIAIGGEMRGLSKAVMAQSDQNLFIPYRSEFRNAMT-------AAASTAIFA 233

Query: 274 YITQNH 279
           +     
Sbjct: 234 FELVRQ 239


>gi|163852857|ref|YP_001640900.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|163664462|gb|ABY31829.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
          Length = 269

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 16/273 (5%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR-KIF 69
           +  ++ D    +L   +RD ++     ++ R         + G  T+    +  +R    
Sbjct: 3   EPIAIDDPDDPRLS-AYRDVRERDLVGRQGR-------FIVEGEVTLRLLFSGSARFAAE 54

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPT 125
            +L           D       PV       +  + G   +H+G+         P     
Sbjct: 55  SVLLAPERWPGFA-DLLRGDGPPVYLAGKDVMSAVAGF-PIHRGVLAVGLRGAEPPPESL 112

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +       L++ L  + +  N+G + R+A AF  D +               + ++GA  
Sbjct: 113 IPPAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAAL 172

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +P+ R  +    L          + L+    + L+      +  L+LG EG GL     
Sbjct: 173 TVPFARAPSGAALLDLAERHALTPLALTPGGSETLDALEPPARALLLLGTEGPGLPESLM 232

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             A     + M     +LNV+ A A+AL+    
Sbjct: 233 ARA-RRVRIAMAPGFDSLNVATAGAIALHHLAR 264


>gi|284035913|ref|YP_003385843.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
 gi|283815206|gb|ADB37044.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
          Length = 248

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 10/243 (4%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +QS +QK ++  Q     + G  +V   L +  +   +L+       + +        
Sbjct: 8   KYIQSLHQK-KYRQQHGAFLVEGAKSVQEVLQSDFQT--ELVVATEGFYKENAHLTDHQR 64

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            PV+      +++    E+ +  LA+       P L     +++ ++LD + DP N+G I
Sbjct: 65  TPVEIASVAELERAGTLESNNAALAVVRTKENRPLL--AGPNEIALILDDIRDPGNLGTI 122

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LR A  +    I+ ++  +   +  +  ++ G+   + +    ++T  L +  S      
Sbjct: 123 LRIADWYGVRKILCSETTADVYNPKVISASKGSFTRVNW-WYGDITRVLAQATSA---VY 178

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   D +             L++G E  G+RP+     T    +   G  ++LNV  A A
Sbjct: 179 GAFLDGEDVHSLGFDASGY-LVMGNESNGIRPEVGTFVTQRVTIPRYGDAESLNVGIATA 237

Query: 271 VAL 273
           V L
Sbjct: 238 VLL 240


>gi|256545522|ref|ZP_05472882.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
 gi|256398733|gb|EEU12350.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
          Length = 243

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 85/189 (44%), Gaps = 11/189 (5%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           K V    +   +      +G++          +    +S  +++LDH+ DP N+G I+RS
Sbjct: 64  KIVFSNKLFDKLSLLENPEGVSACLKIKNQKEI----SSDKILLLDHIQDPGNLGTIIRS 119

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AFS   II         +    +++ G++  + +I +    + L+ +    ++ +   
Sbjct: 120 AEAFSFKDIILLNSCVDIYNEKTIRASMGSIFRLNFIEVE--INDLKDLLDKNYKLVLAD 177

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  K ++     DKI L +G E  G+    +  +     + M G I++LN + AA++ +
Sbjct: 178 MNG-KSVDYYKSCDKIILAIGNEANGISKSLKGLSNDFVSIKMDGRIESLNAAIAASILM 236

Query: 274 YITQNHFAK 282
               N+F++
Sbjct: 237 ----NNFSQ 241


>gi|77407564|ref|ZP_00784377.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
 gi|77173827|gb|EAO76883.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
          Length = 169

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 1/112 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L+++LD + DPHN+G+ILR+A A +  GII  K  S   + V++K+++GA+EH+P 
Sbjct: 58  EENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPVVSKTSTGAVEHVPI 117

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            R++NL+  L  +    F   G   +   P  +     K+AL++G EGKG+ 
Sbjct: 118 ARVTNLSQTLDTLKDKEFWIFGTDMNG-TPSHKWNTKGKLALVIGNEGKGIS 168


>gi|213962171|ref|ZP_03390435.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
 gi|213955177|gb|EEB66495.1| SpoU rRNA methylase family protein [Capnocytophaga sputigena Capno]
          Length = 180

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 3/160 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L          + L+++LD+V   +NIG++ R+  AF  + I      +   +  + K+A
Sbjct: 12  LDIEQFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTA 71

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEG 237
            GA + + +  + N    ++K+   G   I +  +++   L     N   K A+I G E 
Sbjct: 72  LGATDSVAWEYVENTLSVVEKLKEQGVYIISIEQAENSTMLNDFQSNGKQKYAIIFGNEV 131

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           KG+  +    +  +  +   G   +LN+S +A +A++   
Sbjct: 132 KGVEQEVVSASDEVIEIPQYGTKHSLNISVSAGIAIWELA 171


>gi|333029529|ref|ZP_08457590.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
 gi|332740126|gb|EGJ70608.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides coprosuis DSM
           18011]
          Length = 176

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +     +     +++LD++   +N+G++ R+A AF  + I      S    A + K+A
Sbjct: 13  LSTSEFKEIDKVPFIVILDNIRSMYNVGSVFRTADAFRLEKIYLCGITSVPPHAEIHKTA 72

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEG 237
            GA E + +  I +    + ++   G+    +       +  E+   KN KIA+++G E 
Sbjct: 73  LGAEESVDWEYIEDTVHIVDRLKEEGYTVFSIEQAEGSTMLNELELQKNQKIAIVMGNEV 132

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           KG++ +    +     +   G   ++NVS    + ++   N
Sbjct: 133 KGVQQEVINHSNGCIEIPQYGTKHSMNVSVTTGIVIWDLFN 173


>gi|29346221|ref|NP_809724.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298385600|ref|ZP_06995158.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
 gi|29338116|gb|AAO75918.1| putative tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298261741|gb|EFI04607.1| RNA methyltransferase, TrmH family [Bacteroides sp. 1_1_14]
          Length = 252

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/247 (21%), Positives = 99/247 (40%), Gaps = 18/247 (7%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNAL-ARLDWDANLPHPFPVKTVPP 98
           + T + E +FL  G       L +   +   L AT + L A  D  AN      +  V  
Sbjct: 16  KKTRKEEQVFLAEGPKLTGDLLGHFPCRF--LAATSSWLQAHPDIQAN-----EIAEVSQ 68

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + + +    +   Q LA+   P  + + D  R S L + LD + DP N+G I+R A  F 
Sbjct: 69  EELSRASLLKTPQQVLAVFEQPQYTLSPDFARQS-LCLALDDIQDPGNLGTIIRLADWFG 127

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            + II ++      +    ++  G +  +     ++L + +  +        G   D + 
Sbjct: 128 IEHIICSQNTVDVYNPKTIQATMGGIARVKVHY-TSLPEFIHSLGDA--PVFGTFLDGEN 184

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALY 274
             EQ +  + + +++G EG G+  + +       ++          ++LNV+ A AV   
Sbjct: 185 MYEQPLSTNGL-IVMGNEGNGIGKEVEALINRKLYIPNYPQGKETSESLNVAIATAVICA 243

Query: 275 ITQNHFA 281
             +   A
Sbjct: 244 EFRRQAA 250


>gi|302864970|ref|YP_003833607.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302567829|gb|ADL44031.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 275

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 100/274 (36%), Gaps = 27/274 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +  +++ Q+         +     + GV  ++ AL         L   +  L+R   D 
Sbjct: 10  RNASFQQWQALLTNRTKRQRSGEFLVQGVRPITVALEQGWEIRALLHPDRQPLSRWCRDL 69

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                     + P+ + ++ GKE    + LA+   P        V  + L++V D    P
Sbjct: 70  LDRSDARRVALAPELMRELSGKEEESPELLAVVAQPADDLARIPVGPAMLVVVFDRPKTP 129

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTDALQK 201
            NIG ++RSA AF   G+I T   +        ++ +G+L  +P +R+    ++ D +  
Sbjct: 130 GNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRVPSHRDVLDWVAA 189

Query: 202 MHSWG---FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           + + G    Q IG        + +        L++G E  GL    QE +  M  + + G
Sbjct: 190 VRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQEASDRMVRIPIVG 249

Query: 259 ----------IIKALNVSNAAAVALYITQNHFAK 282
                                 VALY      A+
Sbjct: 250 AASSLNAAAAGT----------VALYEAARQRAE 273


>gi|308806822|ref|XP_003080722.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
 gi|116059183|emb|CAL54890.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
          Length = 247

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 3/152 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R +   + L+ V DP N+G + R+AVAF  D +          +    ++A GA   +
Sbjct: 95  AGRRTTRTLALEGVQDPGNLGTLARTAVAFGWDTVALLPGTCDPFNDKAMRAARGATFRL 154

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQ 245
            ++   +  +  +     G         + + ++ E   D  K  L+LG EG+GL     
Sbjct: 155 NFVTFDSFDELERAARELGMDLYAAEPRADEDVDPERVGDVAKACLVLGTEGQGLSDDAL 214

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   + M G +++LNV+ A  +  Y+ +
Sbjct: 215 RAC-KPVAVPMSGEMESLNVAIAGGILCYLMR 245


>gi|255536170|ref|YP_003096541.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
 gi|255342366|gb|ACU08479.1| putative rRNA methylase [Flavobacteriaceae bacterium 3519-10]
          Length = 257

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 109/278 (39%), Gaps = 28/278 (10%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I   ++EKI      H  +L  ++R  KK  +F  + +  ++    F  G   V   L 
Sbjct: 1   MIESLQNEKIK-----HLTRLLTDNRFRKKSGTFAVEGKQENERARKF--GYEPVEYFL- 52

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
                IF              D + P    +  V  +  +K+  + +    + +      
Sbjct: 53  --CESIF--------------DEDFPAG-KISLVSEKVYEKVAYRGSSEGIIGIYNTKSF 95

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +    A++    +++++ V  P N+GA+LRS  AF  D +I T       +  + +S+ G
Sbjct: 96  NLNAFAIKEDSSVIIIESVEKPGNLGAVLRSCEAFGIDALIITDPKVDFYNPNVIRSSVG 155

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLR 241
            L  +   +  N    L  + S  F+      SD    +  +    + AL+ G E  GL 
Sbjct: 156 CLFGMDIFQSEN-NALLDFLESNHFKIFTTRMSDDATDIFNQDFGGRSALVFGTEHSGLS 214

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  T+   + M G I +LN+SNA AV+ Y     
Sbjct: 215 DFWIGKGTNTL-VPMTGSIDSLNLSNAVAVSGYEILRQ 251


>gi|189502158|ref|YP_001957875.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497599|gb|ACE06146.1| hypothetical protein Aasi_0766 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 177

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD++   HNIGA  R A AF  + I      +      + K+A GA E + +  +
Sbjct: 24  PLILVLDNLRSMHNIGAAFRIADAFLLEKIYLCGITAQPPHREIHKTALGAEETVIWEYV 83

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +    LQ + + G+  + L  +D   PL   Q   N+K AL+ G E  G++ +      
Sbjct: 84  PDTYTLLQSLKTKGYLIVALEQTDESIPLQSYQINSNNKCALVFGNEVFGIQEEALAACD 143

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
               +   G   +LNVS +  +A++  
Sbjct: 144 LALEIPQHGTKHSLNVSVSMGIAIWEL 170


>gi|34396174|gb|AAP55640.1| rRNA methylase [Spiroplasma citri]
 gi|110004355|emb|CAK98693.1| putative rrna methyl transferase protein [Spiroplasma citri]
          Length = 262

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 99/244 (40%), Gaps = 14/244 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G + +  AL +    + ++L TK    +L    N+        V    +
Sbjct: 25  YRKEFNLALIEGWNIIDEALQH--NLVVEILTTKINQRKLKNFNNILLTI----VSESIL 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
            K+  +    Q +            +  + +Q +++L+++ DP N+G ++R+ + F    
Sbjct: 79  TKL-SQSKNSQNIIGVIDLTKVKEQNNFQFNQNILLLENIQDPGNVGTLIRTGLGFGFTN 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           II         +  + +++ GA+  +   + +NL + ++      ++ I      +    
Sbjct: 138 IILYNHTVDLFNDKVLRASQGAIFKVAI-KEANLIE-IKNFQLNRYKIITTGLKRQSVFL 195

Query: 222 QE-----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           Q+      +N++  L LG EG GL    QE +     + +   +++LNV+ A  + +Y  
Sbjct: 196 QDCHCQFKQNERYILALGNEGHGLSTTLQEISDYNVQIKINSQLESLNVAQAGTILMYEI 255

Query: 277 QNHF 280
               
Sbjct: 256 NRQM 259


>gi|315927808|gb|EFV07134.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 163

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 2/159 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            L+        L+ ++ +  +++L  ++D  NIGAI R+A A     +I        E  
Sbjct: 1   MLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITRTAYALGVGALIFIGEKLAMEG- 59

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + +++SGA   +P +  ++    + ++   GF         K+    +I N K  L+LG
Sbjct: 60  -VIRTSSGAALDLPIVISNDALSLINELKQVGFYFYASDGSGKEIHSVKISNGKKVLVLG 118

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +EG GL  K  +       + M     +LNVS A A+  
Sbjct: 119 SEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFAILC 157


>gi|126696822|ref|YP_001091708.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543865|gb|ABO18107.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 237

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 17/214 (7%)

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           ++L T+  L +    +       +  V  + +   +       G+A        P     
Sbjct: 10  KILVTEKWLIKNQNLSKQFDESLLTLVSEEVLASAIST-VNPDGIAALVEISSIPNYQFN 68

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                ++VLD + DP N+G + R+A+A   D I      +   +  + ++++GA+ ++P+
Sbjct: 69  SKDDFILVLDRIQDPGNMGNLFRTALAAGVDAIFLAGG-AHPLNQKVLRASTGAVFNLPF 127

Query: 190 IRISNLTDAL--------QKMHSWGFQTIGLSS------DSKKPLEQEIKNDKIALILGA 235
            R     + +         ++ + GF+    SS       + KP  +        LILG 
Sbjct: 128 KRYEGTEEEIINSLLKSLSELSNEGFKIFSTSSFNKSSKKTSKPYWEIDWTKSTVLILGN 187

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVS-NA 268
           EG+G+  K QE       +    ++++LNV+  A
Sbjct: 188 EGQGIHKKIQEAFNETITIPHSELVESLNVACVA 221


>gi|261212101|ref|ZP_05926387.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
 gi|260838709|gb|EEX65360.1| RNA methyltransferase TrmH family [Vibrio sp. RC341]
          Length = 244

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 87/242 (35%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L N +  +  + AT   LA            
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LTNSTLNVQHIFATAEFLAEHAQALAGFESI 66

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    +  +V             A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 67  EATLDDLTKVSTLVSNN-------AAIAVVAIPHIEVPKAQGLMIALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RVADWYGISHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHQTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|315501253|ref|YP_004080140.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315407872|gb|ADU05989.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 275

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 100/274 (36%), Gaps = 27/274 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +  +++ Q+         +     + GV  ++ AL         L   +  L+R   D 
Sbjct: 10  RNASFQQWQALLTNRTKRQRSGEFLVQGVRPITVALEQGWEIRALLHPDRQPLSRWCRDL 69

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEA-VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                     + P+ + ++ GKE    + LA+   P        V  + L++V D    P
Sbjct: 70  LDRADARRVALAPELMRELSGKEEESPELLAVVAQPADDLARIPVGPAMLVVVFDRPKTP 129

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS---NLTDALQK 201
            NIG ++RSA AF   G+I T   +        ++ +G+L  +P +R+    ++ D +  
Sbjct: 130 GNIGTLIRSADAFGASGVIITGHAADPYDPKAVRATTGSLFALPVVRVPSHRDVLDWVAA 189

Query: 202 MHSWG---FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           + + G    Q IG        + +        L++G E  GL    QE +  M  + + G
Sbjct: 190 VRADGLPQVQIIGTDEHGDVDVAEHDLTGPTLLLIGNETHGLSKGWQEASDRMVRIPIVG 249

Query: 259 ----------IIKALNVSNAAAVALYITQNHFAK 282
                                 VALY      A+
Sbjct: 250 AASSLNAAAAGT----------VALYEAARQRAE 273


>gi|184201210|ref|YP_001855417.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183581440|dbj|BAG29911.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 316

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 106/286 (37%), Gaps = 40/286 (13%)

Query: 28  RDYKKMQSFNQKSRH----TSQPENLFLYGVHTVSAALNNPSRK------IFQLLATKNA 77
           RD   +   + +S+        P+N+       V AAL++ +        +  +  T+  
Sbjct: 21  RDVAALTRRSTRSKRGLFRAEGPQNV----REAVRAALDDDAGPSRWAPALDAVYVTRQE 76

Query: 78  LARLDWDANLPHPFP------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN 131
           L R    A             ++ V P+ +  +       QG+            DA+ +
Sbjct: 77  LERHPGIAADLEALESRRGVFLRMVTPEVLGAMTDA-VTPQGMLAVCRIPEVTLQDALAD 135

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L+ VL  V DP N G ++R+A A   D ++ ++      +    +S +G+L H+P + 
Sbjct: 136 TRLVCVLARVQDPGNAGTVVRAADAAGADAVVLSEGSVDPYNPKAVRSTAGSLFHLPVLT 195

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------------QEIKNDKIALI 232
             +L   +        Q +     ++  ++                   +   +   A +
Sbjct: 196 GVDLVSFVAAARERSVQVLAADGHARASVDELADAALLHWAGTAPHSEHEVRLDGPTAWL 255

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            G E +GL     E A     + + G  ++LNV  AA V LY +  
Sbjct: 256 FGNEAQGLSDAELELADLPVAVPLYGRAESLNVGTAATVCLYASAR 301


>gi|194476573|ref|YP_002048752.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
 gi|171191580|gb|ACB42542.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
          Length = 268

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 107/285 (37%), Gaps = 32/285 (11%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           LIS +++  +  +K  H A  RR                     +++ L G H     + 
Sbjct: 2   LISSRRNPLVNRIKSLHEAVGRR-------------------ATDSILLEGTHLFQEIVR 42

Query: 63  NPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                  +++AT   +    +   NLP    +K V  + +  I   +    G+       
Sbjct: 43  LGLVP-NEIVATPQWIQTNNNLIINLPKNNLLKLVTIEVLRAISTTKQPD-GVIAILPKG 100

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
             P    + N   L+VLDH+ DP N+G ++R+A+A   D +   +  +      + ++++
Sbjct: 101 QLPLGPIIPN--FLLVLDHLQDPGNLGTLMRTALAAGVDYVWLLEG-ADPWQPKVLRASA 157

Query: 182 GALEHIPYIRISNLTDALQKMHS-WGFQTIGLSSDSK------KPLEQEIKNDKIALILG 234
           GA   +P  R       LQ +    G Q +    +        +P  Q        L LG
Sbjct: 158 GATLALPLKRFLEKKLLLQNLQILKGMQRVATRVNKHEVTPFIQPYWQLNWCKPTILFLG 217

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            EG GL P  +   T    +    ++++LNV  AAA  L      
Sbjct: 218 NEGSGLDPGLEAVCTDAVTIPHTSLVESLNVGVAAAPLLLERIRQ 262


>gi|240140185|ref|YP_002964662.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           AM1]
 gi|240010159|gb|ACS41385.1| TRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           AM1]
          Length = 269

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 100/278 (35%), Gaps = 19/278 (6%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
           +  ++ D    +L   +RD ++     ++ R         + G  T+    +  +R   +
Sbjct: 3   EPIAIDDPDDPRLS-AYRDVRERDLVGRQGR-------FIVEGEVTLRLLFSGSARFAAE 54

Query: 71  --LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSP 124
             LLA +      D  +      PV       +  + G   +H+G+         P    
Sbjct: 55  SVLLAPERWPGFADLLSG--DGPPVYLAGKDVMSAVAGF-PIHRGVLAVGLRGEEPSPEA 111

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            + +     L++ L  + +  N+G + R+A AF  D +               + ++GA 
Sbjct: 112 LIPSAPAPALVVGLVGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAA 171

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +P+ R  +    L          + L+    + L+      +  L+LG EG GL    
Sbjct: 172 LTVPFARAPSGAALLDLAERHALTPLALTPGGSETLDALEPPARALLLLGTEGPGLPESL 231

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFA 281
              A     + M     +LNV+ A A+AL+      F+
Sbjct: 232 MARA-RRVRIAMAPGFDSLNVATAGAIALHHLAGRRFS 268


>gi|254786166|ref|YP_003073595.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
           T7901]
 gi|237686905|gb|ACR14169.1| tRNA guanosine-2'-O-methyltransferase [Teredinibacter turnerae
           T7901]
          Length = 228

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 7/156 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--SAVLAKSASGALEHI 187
           R   L ++ D V+   N+ AI R+  A   D I         E        +++ A + +
Sbjct: 16  RQPDLTVITDEVHKGRNLSAITRTCDAVGIDTI----HCVMPEDGYQTYNGTSASAEKWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S+++  +  +   GFQ +  +  D+             AL+LGAE KG+ P+   
Sbjct: 72  AVQHHSSISAPVNDLKREGFQLVAANLGDNTLDYRNVDYTKPTALVLGAEVKGVSPEAAA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  + M G++++ NVS AAA+ L   Q+   +
Sbjct: 132 AVDYNVTVPMVGMVESFNVSVAAAIILMEAQHQRQQ 167


>gi|254527140|ref|ZP_05139192.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
 gi|221538564|gb|EEE41017.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
          Length = 237

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 18/223 (8%)

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L +     +++L T+  L +    +   H   +  V  + +   +       G+A     
Sbjct: 2   LKSGKNP-YKILVTEKWLRKNQNLSRKFHQSIINIVTEEVLASAIST-INPDGIAALVEI 59

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              P          ++VLD + DP N+G + R+A+A   D I      +      + +++
Sbjct: 60  STIPNYKFDIKDDFVLVLDRIQDPGNMGNLFRTALAAGVDAIFLAGG-AHPLGQKVLRAS 118

Query: 181 SGALEHIPYIRISNLTDALQKMHSW--------GFQTIGLSSDSKKP------LEQEIKN 226
           SGA+ H+P++R     + +              GF+    SS++K          +   +
Sbjct: 119 SGAVFHLPFLRFDGTEEEILNSLLKSLSELSNVGFKIFSTSSNNKSSKKPSKPYWEVDWS 178

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS-NA 268
            + ALILG EG+G+  K QE       +    ++++LNV+  A
Sbjct: 179 RRTALILGNEGQGIHKKIQEAFNETITIPHSELVESLNVACVA 221


>gi|89256424|ref|YP_513786.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314861|ref|YP_763584.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502516|ref|YP_001428581.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010704|ref|ZP_02275635.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367761|ref|ZP_04983782.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           257]
 gi|89144255|emb|CAJ79529.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129760|gb|ABI82947.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253572|gb|EBA52666.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           257]
 gi|156253119|gb|ABU61625.1| rRNA methyltransferase, TrmH family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 250

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 97/263 (36%), Gaps = 22/263 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +     +   + G+     AL   P ++I  +L T+ A     
Sbjct: 6   QKLYKEIKKLHSSQGRKK----SQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                        +  +  + +  +    QG+ +    L    L    +   ++VLD + 
Sbjct: 62  PLNKK------YIITEKDFEAL-SQTQNPQGVLILAEKLKLEQLSF--DDDFILVLDRIQ 112

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQ 200
           DP NIG ILR+A+A     +I         +     +  GA   + +  I+NL +   + 
Sbjct: 113 DPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYITNLAELKNIA 172

Query: 201 KMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           K+          +         +E K     L+ G E  G+      +      +     
Sbjct: 173 KLQQRKIWL--TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSD 227

Query: 260 IKALNVSNAAAVALYITQNHFAK 282
           I++LNV+ AA + L+       +
Sbjct: 228 IESLNVAQAATIYLFEGLRQRLR 250


>gi|325102944|ref|YP_004272598.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
 gi|324971792|gb|ADY50776.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter saltans DSM 12145]
          Length = 176

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 6/173 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L  P+++  +N     +++VLD+V   HN+G+  R+A  F+ D +      +   
Sbjct: 4   LKLDELNRPSVEEFKNQDKLPIVVVLDNVRSLHNVGSAFRTADGFAVDALYLCGITAQPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPL--EQEIKNDKI 229
              + K+A GA + I +   +N+ DA+  +   G+Q I +  +++   L   +  K+ K 
Sbjct: 64  HREIEKTALGATQSIDWQYFANVADAVADLKENGYQIIAIEQAENSISLLDFEPKKDQKF 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           AL  G E  G+  +  +   +   +   G   + N+  +  + L+   +   K
Sbjct: 124 ALFFGNEVNGVSEEVMKQIDTCIEIPQFGTKHSFNIVISTGIVLWDFFSKLNK 176


>gi|218263084|ref|ZP_03477322.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222958|gb|EEC95608.1| hypothetical protein PRABACTJOHN_03003 [Parabacteroides johnsonii
           DSM 18315]
          Length = 256

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 6/181 (3%)

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           +        Q +            +A  +S L++ LD + DP N+G I+R A  F  + I
Sbjct: 72  RKASFLKNPQDVLAVFKRPDWSIDEADPSSSLVLALDGIQDPGNLGTIIRLADWFGIEHI 131

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
           + +   +   S    ++  GAL H+     + L D L+   +      G   D +    +
Sbjct: 132 VCSPDTADVFSPKTVQATMGALAHVKVHY-TELEDYLKAQVARQIPLFGTFLDGENMYTK 190

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVALYITQN 278
           E+  + I +++G EG G+RP+ +E      ++          ++LNV+ A AV     + 
Sbjct: 191 ELSANGI-IVMGNEGNGIRPQIEELIDQKLYIPSFPPERETSESLNVAIATAVICAEFRR 249

Query: 279 H 279
            
Sbjct: 250 R 250


>gi|256818854|ref|YP_003140133.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256580437|gb|ACU91572.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 180

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 3/165 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L          + L+++LD+V   +NIG++ R+  AF  + I      +   +  + K+A
Sbjct: 12  LDIEQFKKAEKTPLIVILDNVRSLNNIGSVFRTCDAFLIEKIYLCGITATPPNKEIHKTA 71

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEG 237
            GA + + +  + N   A++K+       I +  +++   L     N   K A+I G E 
Sbjct: 72  LGATDSVAWEYVENTLSAVEKLKEQDVYIISIEQAENSTMLNDFQPNGKQKYAIIFGNEV 131

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           KG+  +   T+  +  +   G   +LN+S +A +A++       K
Sbjct: 132 KGVEQEVVSTSDEVIEIPQYGTKHSLNISVSAGIAIWELAMKLRK 176


>gi|116073360|ref|ZP_01470622.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
 gi|116068665|gb|EAU74417.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9916]
          Length = 284

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 22/235 (9%)

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALET 118
            L    + + +L+AT   L          HP P ++ V  + +   +       G+    
Sbjct: 45  LLRQHPQSL-ELVATPTWLQGHQALLARLHPAPKLQLVSEEVLQASL-TTVNPDGV--AA 100

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              L+       +   ++ LD + DP N+G +LR+A+A   + +      +   +  + +
Sbjct: 101 LLPLALLPQKPASPAFVLALDRIQDPGNLGTLLRTAMAADVEMVWQGSG-ADPLNPKVVR 159

Query: 179 SASGALEHIPYIR--------ISNLTDALQKMHSWGFQTIGLSSDSK------KPLEQEI 224
           S++GA+  +P  R        I+ L   L +    G Q +              P  +  
Sbjct: 160 SSTGAVLKLPLHRFGPAEAAGITELKQTLHQARDRGLQVVATLVPGAGGPLSVVPYWELD 219

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
                 L+LG EG+GL P+  +  T    L     +++LNV+ +AAV  L   + 
Sbjct: 220 WRLPTVLVLGNEGRGLHPELLDCCTHGVTLPHSPAVESLNVA-SAAVPLLLERRR 273


>gi|315633532|ref|ZP_07888822.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315477574|gb|EFU68316.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 358

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 113/281 (40%), Gaps = 14/281 (4%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M   S  +     ++K S +    R  +         +K +  ++ E + +YG +   A 
Sbjct: 78  MKKASGAEGNVKVTVKSSRFDDKPREKKTGPLSPRAPEKIKK-NRAEEMKVYGENACLAL 136

Query: 61  LNNPSRKIFQLLATKNALARL-DWDANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALET 118
                  I +L AT     ++ D  + L     V   V    + K+ G E  H G+ +  
Sbjct: 137 FQQRPGSIVRLWATVQMAHKIGDICSYLATNKKVYHIVDNDEMIKVSGTE-HHGGICMLV 195

Query: 119 APL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                  L   LD       L++LD+VN+  NIG ILR+   F    I+     S + SA
Sbjct: 196 KKAHPFTLQGYLDVPHQEDCLVLLDNVNNAQNIGGILRTCAFFGVKNIVVENAESLN-SA 254

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALIL 233
           V  + A G  E++  +  ++  +AL ++   G+Q + +SSD +   L++    +K   +L
Sbjct: 255 VTLRVAEGGAEYVRVLETNDTRNALSQLRQAGYQILHVSSDENATALDKVQLKNKTVFVL 314

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGII-KALNVSNAAAVAL 273
            +E         E +     L     +   LNVS  A + L
Sbjct: 315 -SEST--TKALSEKSDEQVRLAFASPVKNGLNVSVNAGILL 352


>gi|212697338|ref|ZP_03305466.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675787|gb|EEB35394.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 243

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
                DK+   E   +G++          + + +    +++LDH+ DP N+G I+RSA A
Sbjct: 68  SNNLFDKLSLLE-NPEGVSAVLKMKDKKEISSKK----VLLLDHMQDPGNLGTIIRSAEA 122

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           FS   II         +    +++ G++  + +I +    + ++ + +  ++ I    D 
Sbjct: 123 FSFKDIIFLNNCVDLYNEKTIRASMGSIFRLNFIDLE--LEDVKDLINKDYKLILADMDG 180

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           K  ++     DKI L +G E  G+    ++ +     + M G I++LN + AA++ +   
Sbjct: 181 K-SVDYFKSCDKIILAIGNEANGISKSLKDLSDDFVSIKMDGEIESLNAAIAASILM--- 236

Query: 277 QNHFAK 282
            N+F++
Sbjct: 237 -NNFSQ 241


>gi|88803205|ref|ZP_01118731.1| spoU protein [Polaribacter irgensii 23-P]
 gi|88780771|gb|EAR11950.1| spoU protein [Polaribacter irgensii 23-P]
          Length = 225

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 8/161 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              L    L+  R     +VL+ +  PHN  A++R+   F    +   +      + V  
Sbjct: 18  RKKLFQKVLEN-RTRHFTVVLEDIFQPHNASAVVRTCDIFGIQDVHAIENK--YNTKVSR 74

Query: 178 KSASGALEHIPYIRI----SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALI 232
             A G+ + +   R      N  + L  +   G+Q I  S  +    L+      K A +
Sbjct: 75  HVAKGSQKWLNQYRYRSDGDNTKECLDGLKEKGYQIIATSPHNNSCVLQDFDFTKKTAFV 134

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G E +G+     E A     + M G  ++LN+S AAA+ L
Sbjct: 135 FGVEAEGVSDCVIENADGFLKIPMVGFTESLNISVAAAIIL 175


>gi|239917947|ref|YP_002957505.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239839154|gb|ACS30951.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 298

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 84/260 (32%), Gaps = 28/260 (10%)

Query: 43  TSQPENLFLYGVHTVSAALNNP--------------SRKIFQLLATKNALARLDWDANL- 87
             +     + G      AL                  R + Q+  +   + R    A L 
Sbjct: 28  RRRTGTFLVEGPQACREALRAHLGEGPTAAAGQWRAGRVLTQVYVSGGLVDRDPALAELV 87

Query: 88  ----------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
                          V+    + +  +         +A+   P        +  ++L  V
Sbjct: 88  ARVRDRPTPGGERVLVREASDEVLTAMADAVTGQDIVAVARMPEPQAVEAVLEEARLAAV 147

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  V DP N G ++R+A A   D ++ T       +  + +S +G+L H+P +       
Sbjct: 148 LCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRSTAGSLFHLPVVTAVPAEA 207

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHL 254
           A+    + G Q           L+           A + G E +GL       A     +
Sbjct: 208 AVAAARAAGLQVWAADGYGADRLDALAPGVVAAPTAWLFGNEAQGLDDGELALADRRVAV 267

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LNV  AA V LY
Sbjct: 268 PLYGAAESLNVGTAATVCLY 287


>gi|218888224|ref|YP_002437545.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759178|gb|ACL10077.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 187

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 4/139 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-AKSASGALEHIP 188
           R   L +VL +++DPHN+ AI RS  AF    +     Y+ +   VL  KS++ A + + 
Sbjct: 11  RQKDLTLVLANIHDPHNVSAIYRSCDAFGVAQVHLY--YTDTAFPVLGRKSSASARKWVD 68

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R S+    ++ +   G + +  S + + KPL         A+I+G E  G+ P+  E 
Sbjct: 69  TVRHSDAQSLMRTLKEGGHRVLATSCTPAAKPLGDYDMTQPTAIIMGNEHSGVAPELVEL 128

Query: 248 ATSMAHLHMPGIIKALNVS 266
                ++ M G+I++ NVS
Sbjct: 129 VDGEVYIPMYGMIQSFNVS 147


>gi|94985187|ref|YP_604551.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
 gi|94555468|gb|ABF45382.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
          Length = 263

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 6/186 (3%)

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
            +  +K+ G+E     LAL   P  +P L  V  + +++VL  +  P NIGAILR+A A 
Sbjct: 80  REAFEKVSGRENPDGLLALV--PTPAPRLPEVGEAGVVVVLHGLEKPGNIGAILRTADAA 137

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++   R +   S  + +++ G++  +P   +                 +  + D+ 
Sbjct: 138 GAAGVLVLGRGADVYSPNVIRASQGSVFTLPVANLEEAAALAWL-AEHRLTRVACTPDAP 196

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-- 275
           +         ++AL+LGAE +GL P  +  A     + M G   +LNV+ AAA+ LY   
Sbjct: 197 QVYWDAPLTGRVALVLGAEHEGLPPAWRA-AEMPVRVPMHGTADSLNVATAAALVLYECV 255

Query: 276 TQNHFA 281
            Q   A
Sbjct: 256 RQRRVA 261


>gi|262065888|ref|ZP_06025500.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380369|gb|EFE87887.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 254

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 110/278 (39%), Gaps = 31/278 (11%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I  K+++ I  LK     K R +   +  +   ++   + + PE + +         
Sbjct: 1   MEIIESKENKLIKFLKKLKQKKYRDSEAQF--LAEGHKFLDYDTVPEIIIV--------- 49

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
                  +  L   K  L R +    L        V  +   ++  +E   QG+ +    
Sbjct: 50  ----REDVKDLYMEK--LDRFECKKIL--------VSEKIFQELSSQE-NSQGIIIV--- 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                 D    S  L++LD V DP N+G I+R   A +   II TK      +  + ++ 
Sbjct: 92  YYKKNNDLNSLSNNLVILDDVADPGNLGTIIRLCDATNFKDIILTKGTVDVYNEKVIRAT 151

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKG 239
            G++ ++    +    + ++ +    +  I    D +  P  +    +K A+I G EG+G
Sbjct: 152 MGSILNVNLFYLEK-QEIIKLLKENNYSVIATYLDKEALPYNKIQLKEKNAVIFGNEGRG 210

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +    +     + +    ++LNV+ A+A+ LY  +
Sbjct: 211 ICDEFINISDCKTIIPILSNTESLNVAVASAIILYKFR 248


>gi|319902170|ref|YP_004161898.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
 gi|319417201|gb|ADV44312.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides helcogenes P
           36-108]
          Length = 253

 Score =  145 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 95/246 (38%), Gaps = 15/246 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++    +     G   V   L +   +   L+AT   +++   + +LP    V  +  +
Sbjct: 17  KKNRKNDKVFLAEGPKLVGDLLEHFPCQF--LIATSEWISQ---NEDLPTD-DVTIITEE 70

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    +   Q LA+   P  +     + +S L + LD + DP N+G I+R A  F  
Sbjct: 71  ELSRASLLKTPQQVLAVFRQPEDTADFSVISHS-LCLALDDIQDPGNLGTIIRLADWFGI 129

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + I  +     + +    ++  G +  +       L + +  +   G    G   D +  
Sbjct: 130 EHIFCSPNTVDAYNPKTVQATMGGIARVKLHYTP-LPELICALK--GIPVYGTFLDGEDI 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVALYI 275
             Q + +  + +++G EG G+  + ++      ++          ++LNV+ A AV    
Sbjct: 187 YCQPLSSYGL-IVMGNEGNGIGKEVEQLINRRLYIPNYPADRQTSESLNVAIATAVVCAE 245

Query: 276 TQNHFA 281
            +   A
Sbjct: 246 FRRQAA 251


>gi|258619991|ref|ZP_05715031.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258587724|gb|EEW12433.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 260

 Score =  145 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 94/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L + + K+  + AT   LA     AN+   +
Sbjct: 24  KLIRALGQKKQRKAHSLFLVQGEKNVLE-LASSTLKVQNIFATAEFLAEH---ANVLAGY 79

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 80  ECTEAALDDLTKVSTLVSNN----AAIAVVEIPRIEVPKAQGLMIGLDGVSDPGNLGTII 135

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 136 RLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 191

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 192 AFLEGVSVHQTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 250

Query: 272 AL 273
            L
Sbjct: 251 IL 252


>gi|260778120|ref|ZP_05887013.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606133|gb|EEX32418.1| RNA methyltransferase TrmH family [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 245

 Score =  145 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 89/243 (36%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L N   ++ Q+ AT   L       N    
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LVNSELQVKQIFATGEFLTANQSQLNDFEC 65

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                        +V             A +  P++   +   L++ LD V+DP N+G I
Sbjct: 66  IEASLDDLTKASTLVSNN-------AAIAVVEIPSVKVPQAQGLIIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    I+ +K  +   +     +  G+   +   ++    D    +        
Sbjct: 119 IRVADWYGIKHIVASKDCADPYNPKTISATMGSFGRVTVSQL----DLPSYLEQASIPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + E   + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESIHKTEFNAEGI-LLMGSESHGIREQAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|218676911|ref|YP_002395730.1| rRNA methylase [Vibrio splendidus LGP32]
 gi|218325179|emb|CAV27085.1| rRNA methylase [Vibrio splendidus LGP32]
          Length = 244

 Score =  145 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 99/250 (39%), Gaps = 18/250 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD- 84
           + +  K +++  QK +         + G   V    N+        L  KN  A  D+  
Sbjct: 3   SKKQLKLLRALGQK-KQRKAHGLFLVQGEKNVLELFNSD-------LVVKNVFATADFLS 54

Query: 85  ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            N    F    V    +D +      V    A+    +  PT +  + + L++ LD V+D
Sbjct: 55  ENHASLFEFDCVEAS-LDDLTKASTLVSNNAAIAVVEI--PTFELPKATGLMIALDGVSD 111

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R A  +    I+ +   +   +     +  G+   + ++  ++L + L++  
Sbjct: 112 PGNLGTIIRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRV-HVSQTDLPEYLEQ-- 168

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                  G   + +   + E   + I L++G+E  G+R    +  T    +   G  ++L
Sbjct: 169 -ANLPVYGAFLEGESVHKTEFTANGI-LLMGSESHGIREHAAKFVTDKITIPAFGGAESL 226

Query: 264 NVSNAAAVAL 273
           NV+ A  + L
Sbjct: 227 NVAMATGIIL 236


>gi|294815551|ref|ZP_06774194.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326443902|ref|ZP_08218636.1| putative tRNA/rRNA methyltransferase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328150|gb|EFG09793.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 179

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +++ ++L++V  P N+G+I+R+A A     +      +   +A   K   G   ++    
Sbjct: 22  AEVALLLENVQSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLDVQT 81

Query: 192 ISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              L +A++++ + G++ +GL   D   PL +   +    + +G E  G+ P+      +
Sbjct: 82  FETLPEAVERVRADGYRLVGLELADEAVPLHEADLSGATCIAVGNEDHGISPQALGMCDA 141

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +A +   G + +LNV+ A AVA Y  +  
Sbjct: 142 VAFIPQLGRVGSLNVATALAVACYEVRRQ 170


>gi|119946835|ref|YP_944515.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
 gi|119865439|gb|ABM04916.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
          Length = 247

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 94/242 (38%), Gaps = 9/242 (3%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+    ++ +   +     + G   V    N+    + QL AT + + +     N     
Sbjct: 8   KLIHALEQKKQRKKNGLFLVQGEKNVGELFNSD-FTVKQLFATSSYINKNSRALNEFGLV 66

Query: 92  PVKT-VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            +        + K  G    +  +       + P L  ++  +L++VLD V DP N+G I
Sbjct: 67  SLTIEATEDELKK-AGTLISNNSVLAVVECKIMP-LPQIQKDELILVLDQVGDPGNLGTI 124

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +  +  ++ G+   +      + TD  + +        
Sbjct: 125 IRVADWYGIKHIICSPDCADFYNPKVIAASMGSFARVQV----SHTDLSEYLSQQSMAIY 180

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +  + +   N    +++G+E  G+ P+ ++  +    +   G  ++LNV+ A  
Sbjct: 181 GAFLEGEN-IHKANLNKSAFIVMGSESHGISPEIEKFISHKMTIPSFGGAESLNVAMATG 239

Query: 271 VA 272
           + 
Sbjct: 240 II 241


>gi|56708186|ref|YP_170082.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670657|ref|YP_667214.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|254370673|ref|ZP_04986678.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|56604678|emb|CAG45741.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320990|emb|CAL09124.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568916|gb|EDN34570.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|282159402|gb|ADA78793.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 250

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 99/264 (37%), Gaps = 24/264 (9%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +     +   + G+     AL   P ++I  +L T+ A     
Sbjct: 6   QKLYKEIKKLHSSQGRKK----SQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                        +  +  + +  +    QG+ +       P L+ +  +   ++VLD +
Sbjct: 62  PLNKK------YIITEKDFEAL-SQTQNPQGVLILA---EKPKLEQLSFDDDFILVLDRI 111

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--L 199
            DP NIG ILR+A+A     +I         +    ++  GA   + +  I+NL     +
Sbjct: 112 QDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNI 171

Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            K+          +         +E K     L+ G E  G+      +      +    
Sbjct: 172 AKLQQRKIWL--TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLS 226

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            I++LNV+ AA + L+       +
Sbjct: 227 DIESLNVAQAATIYLFEGLRQRLR 250


>gi|254391080|ref|ZP_05006288.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197704775|gb|EDY50587.1| tRNA/rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 182

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +++ ++L++V  P N+G+I+R+A A     +      +   +A   K   G   ++    
Sbjct: 25  AEVALLLENVQSPFNVGSIVRTAAALGVGRLYLAGNTASPRNAKAQKICMGTDRYLDVQT 84

Query: 192 ISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              L +A++++ + G++ +GL   D   PL +   +    + +G E  G+ P+      +
Sbjct: 85  FETLPEAVERVRADGYRLVGLELADEAVPLHEADLSGATCIAVGNEDHGISPQALGMCDA 144

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +A +   G + +LNV+ A AVA Y  +  
Sbjct: 145 VAFIPQLGRVGSLNVATALAVACYEVRRQ 173


>gi|313887355|ref|ZP_07821046.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923274|gb|EFR34092.1| RNA methyltransferase, TrmH family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 184

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 3/163 (1%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            LE   L +    +     L ++LD+V   HN+G+I R+A AF  + ++           
Sbjct: 8   ILEMNRLTTEEYHSAPKVPLTILLDNVRSMHNVGSIFRTADAFRLEELLLVGITGCPPHP 67

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPL-EQEIKNDK-IAL 231
           ++ K+A GA E +P+  + +  + L++  + G   + L  +    PL  Q   +D+   L
Sbjct: 68  LIHKTAIGAEEAVPWRHLDSAIEFLERCRAAGRTILALEQTHQSIPLGNQPALDDRGAVL 127

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           I+G E  G+  +  + A     +   G   +LNVS A  +A+Y
Sbjct: 128 IVGNEVHGISDEVIQYADDCLEIPQHGTKHSLNVSVATGIAIY 170


>gi|298208939|ref|YP_003717118.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
 gi|83848866|gb|EAP86735.1| spoU protein (spoU) [Croceibacter atlanticus HTCC2559]
          Length = 238

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   +  + V   HN  A++RS   F    +   +  +     +  + A GA + +  
Sbjct: 42  RTNHFTVATEDVYQLHNTSAVIRSCDVFGVQNVHIIEEQNA--KKIDREIAMGAQKWVTI 99

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R  ++ D+++ +   G+Q +  S       L         A+  G E  GL  +    A
Sbjct: 100 NRYHSVQDSIKSLKEKGYQIVATSPHIESHNLRDFDVTKPSAIFFGTEKDGLSEEVLNQA 159

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
            S   + M G  ++LN+S +AA+ L
Sbjct: 160 DSYIKIPMVGFTESLNISVSAAIIL 184


>gi|170751421|ref|YP_001757681.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657943|gb|ACB26998.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
          Length = 291

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 10/214 (4%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LLA +         A  P P P+ +     +  + G   +H+G+      L  P LDA  
Sbjct: 58  LLAPERWPGLAADVAACPEPPPIYSASKAVMSAVTGF-PIHRGVLAVG--LRGPGLDAAA 114

Query: 131 NSQLLMV------LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                        L  + +  N+GA  R+A AF  D ++              + ++GA 
Sbjct: 115 LVPPPPAPALVVGLAGLTNHDNVGAAFRNAAAFGADAVLLDGATCDPLYRKSIRVSAGAA 174

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
              P+ R+ +  D L+   +   + +  S  + + L+      +  LILG EG GL   T
Sbjct: 175 LIQPFARLPDGQDWLRLAETLDLRPLAFSPGASETLDARAAPPRALLILGTEGPGLDAAT 234

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              A     + M     +LNV+ AA +ALY    
Sbjct: 235 LARA-RPIRIPMAAGFDSLNVATAAGIALYTIAR 267


>gi|261867060|ref|YP_003254982.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412392|gb|ACX81763.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 358

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/270 (23%), Positives = 109/270 (40%), Gaps = 20/270 (7%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +K S +    R  +         +K +  ++ E + +YG +   A        I +L A 
Sbjct: 92  VKSSQFDDKPREKKTGPLSPRAPEKIKK-NRAEEMKVYGENACLALFEQRPASIVRLWAK 150

Query: 75  KNALARL-DWDANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETA---PL-LSPTLDA 128
                ++ D  + L     V   V    + K+ G E  H G+ +      P  L   LD 
Sbjct: 151 VQMAHKIGDICSYLAANKKVYHIVESDELTKVSGTE-HHGGICMLVKKSYPFTLQGYLDV 209

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++LD VN+  NIG ILR+   F    ++  +  S + SAV  + A G  E++ 
Sbjct: 210 PHQEDCLVLLDGVNNAQNIGGILRTCAFFGVKNMVLEEAESLN-SAVTLRVAEGGAEYVR 268

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +   +  +AL ++   G+Q I +S+D +   L++    +K   +L +EG        E 
Sbjct: 269 VLETDDSRNALAQLRHAGYQIIHVSNDKNSTALDKVRLKNKTVFVL-SEGS--TETLAEK 325

Query: 248 ATSMAHL----HMPGIIKALNVSNAAAVAL 273
           +     L     +      LNVS  A + L
Sbjct: 326 SDEQVRLSFGNPLKNG---LNVSVNAGILL 352


>gi|298530210|ref|ZP_07017612.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509584|gb|EFI33488.1| tRNA guanosine-2'-O-methyltransferase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 197

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 4/155 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L +V+++++DPHN+ AILRS  AF+   +            V  KS++ A + +  
Sbjct: 21  RQRDLTLVMNNIHDPHNVSAILRSCDAFAVPDVHLL-YVGQPFPEVGRKSSASARKWVRR 79

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           IR  +  + +Q++   G   I          L +       A+ILG E  G++   ++  
Sbjct: 80  IRHRDAGEMVQRLEGQGLCLIRTGFGPQSISLPEWDFTRPTAVILGNEHSGVQEDLEQMV 139

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
               ++ M G++++LNVS AAAV LY    Q H A
Sbjct: 140 AQEIYIPMQGMVQSLNVSVAAAVILYEAFRQRHQA 174


>gi|320332674|ref|YP_004169385.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319753963|gb|ADV65720.1| tRNA guanosine-2'-O-methyltransferase [Deinococcus maricopensis DSM
           21211]
          Length = 217

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 10/156 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES----AVLAKSASGALE 185
           R   L ++++ VN PHN  AILRS  A         + ++             ++  A +
Sbjct: 16  RQPTLTVLMEEVNKPHNFSAILRSCDAVGV-----WEAHAVPPKNGKLPTYNATSGSAEK 70

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKT 244
            +     ++   A++++   GFQ +     ++     +        ++LGAE  G+  + 
Sbjct: 71  WVRVQSHADAPSAVRELQGRGFQVLATHLSARSVDYRELDYTRPTCVLLGAEKWGVSEEA 130

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + A +   + M G++++LNVS A A  L+  Q   
Sbjct: 131 ADAADANVVIPMLGMVQSLNVSVACATILFEAQRQR 166


>gi|298290777|ref|YP_003692716.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
 gi|296927288|gb|ADH88097.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
          Length = 268

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 9/246 (3%)

Query: 39  KSRHTSQPENLFLYGVHTVSA-ALNNPSRKIFQ--LLATKNALARLDWDANLPHPFPVKT 95
           K R        F+    TV   AL+  +R   +  LLA     A  D  A  P   P+ T
Sbjct: 22  KERDLVGRGGRFIVEGRTVLDVALSARNRFALESLLLAESRVHALTDLLAQAPDDLPIYT 81

Query: 96  VPPQTIDKIVGKEAVHQGLA----LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                +D I G   +H+GL         P ++  + ++ +  L++V   + +  N+G I+
Sbjct: 82  AAQPILDGITGFH-IHRGLLGVGLRGEMPSMADLVASLPDEALVVVPLGITNHDNVGGIM 140

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A AF  D  +              + + G    +P+ R  +    L  + + GF+ + 
Sbjct: 141 RNAAAFGADAALFDFASCDPLYRKAIRVSVGGSLVVPFAREGSAEAILDLLAAHGFELLA 200

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           LS   +  L    +  + AL+LGAEG GL       A     + M     +LNV+  + +
Sbjct: 201 LSPAGEATLGGIERPKRAALLLGAEGPGLPDHVLARA-RTVRIPMKAGFDSLNVATTSGI 259

Query: 272 ALYITQ 277
           AL+   
Sbjct: 260 ALHALA 265


>gi|20808975|ref|NP_624146.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20517641|gb|AAM25750.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
          Length = 210

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 3/169 (1%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           + LE        +   R   L++ +D V + HN  AILR+  A     +      +    
Sbjct: 7   IVLEDRLKRFYEVLQKRQKDLVVFVDDVTNEHNFSAILRTCDAVGVMRVYYFSE-AKKGI 65

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSD-SKKPLEQEIKNDKIAL 231
            +    +  A   +   R+ +   A++++      Q +    D S K   +        L
Sbjct: 66  EINEAVSMAANRWLFIERVYDREKAIKEIKERENLQVVVTWLDESSKDFREINYTKPTLL 125

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G E KG+       A     + M G++++LNVS A  + LY      
Sbjct: 126 VVGNELKGVSEDILNLADERIVIPMMGMVQSLNVSVATGIILYEALRQR 174


>gi|257146522|emb|CAX30805.1| tRNA (Guanosine-2'-O-)-methyltransferase [Arsenophonus endosymbiont
           of Pentastiridius sp.]
          Length = 239

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R   L + L++V+ PHNI A++R+A A     I     +  + S  L+ +A+G+   +
Sbjct: 14  AMRQPDLTVCLENVHKPHNISAVIRTADAVGIPQIHA--IWCKNSSKSLSAAAAGSNHWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
                + + +A+    + G Q +    +++     Q        +ILG E   +  +   
Sbjct: 72  KVKTHATIENAISTCKAVGMQILAAYLNNQAIDFRQIDYTQPTCIILGQERASISKQALT 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A    H+ M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADHNIHIPMMGMVQSLNVSVASALILYEAQRQR 165


>gi|21674078|ref|NP_662143.1| SpoU rRNA methylase family protein [Chlorobium tepidum TLS]
 gi|21647231|gb|AAM72485.1| spoU rRNA methylase family protein [Chlorobium tepidum TLS]
          Length = 169

 Score =  145 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                D+ R+  + ++L ++    N+GA+ R+A A   D I+ T   +      + K+A 
Sbjct: 6   PEAYADSARH-PVTLMLYNIRSMWNVGAMFRTADAAGIDEIVITGYTATPPRKEIDKTAL 64

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKG 239
           GA E +P+   ++  +A+  +     +  GL  +++ +        D  +ALI+G E +G
Sbjct: 65  GAQETVPWRHFADPVEAITVLKRESKKIFGLEIAENSRSYSSLTAGDFPLALIVGNEVEG 124

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +          +  +   G+  +LNV+ AA VAL+     F K
Sbjct: 125 IGDALLSHCDGVIEIPQYGVKHSLNVAVAAGVALFECVRVFRK 167


>gi|149926571|ref|ZP_01914832.1| putative RNA methyltransferase [Limnobacter sp. MED105]
 gi|149824934|gb|EDM84148.1| putative RNA methyltransferase [Limnobacter sp. MED105]
          Length = 273

 Score =  145 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 10/236 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWD-----ANLPHPFPVKT-VPPQTIDKIV 105
            G+H     L+ P   I  +   ++ L + +W      +++     V+  V   T+   +
Sbjct: 40  EGLHLAETLLHLPGAHIESVWIPQSLLNKPEWLTMSALSDVLENGEVRCLVLSDTLYSKL 99

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
            K     G  +   P+ +     ++    + +LD + DP N+G +LR+  A     +  +
Sbjct: 100 SKLNTPTGPMIFFKPVNASATIDLKQD--IALLDGIQDPGNVGTLLRNCAAAGVQQVALS 157

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEI 224
              +   S  + ++  GA   +      +L  AL    S        S   K   L    
Sbjct: 158 DHSAWVWSDKVLRAGMGAQFGLQLYTELDLLQALSAAKSK-IPVRVTSLHPKSVDLFNAD 216

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + G+EG+G+     + A+    +     I++LNV +++AV L+      
Sbjct: 217 LKPAGVWVFGSEGQGVSQAWLDRASEHIRIPQSKTIESLNVGSSSAVCLFEQFRQR 272


>gi|111224586|ref|YP_715380.1| putative 23S rRNA methylase [Frankia alni ACN14a]
 gi|111152118|emb|CAJ63846.1| putative 23S RRNA methylase [Frankia alni ACN14a]
          Length = 283

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 7/215 (3%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           + ++    +A  R + D       PV+ V  +    +  +    QGL    A L    L 
Sbjct: 53  LLEVFVGVSAAGRHE-DLLRAAAVPVRLVTDEAAAAL-SETVTPQGLVA-VAALPGHRLA 109

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +   +L+ V    NDP N G ++RSA A   D ++ T            +S++G+  H+
Sbjct: 110 DLAAPRLVAVCVGANDPGNAGTVIRSADAAGADAVVFTGGGVDPFGGKCVRSSAGSHFHL 169

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----KNDKIALILGAEGKGLRPK 243
           P I     T+ +  + + G + +  S  +++ L+  +     +   A + G E  GL P 
Sbjct: 170 PVIVEPTFTEVVTGLRARGCRIVATSGSARRDLDTAVDAGELDGPTAWLFGNEAHGLDPA 229

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               A +   + + G  ++LN++ A+A+ LY +  
Sbjct: 230 GLAAADAALRVPVYGQAESLNLAVASALCLYASAR 264


>gi|54114167|gb|AAV29717.1| NT02FT1402 [synthetic construct]
          Length = 250

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 97/261 (37%), Gaps = 24/261 (9%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLDWDA 85
           +++ KK+ S   + +     +   + G+     AL   P ++I  +L T+ A        
Sbjct: 9   YKEIKKLHSSQGRKK----SQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPLN 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDP 144
                     +  +  + +  +    QG+ +       P L+ +  +   ++VLD + DP
Sbjct: 65  KK------YIITEKDFEAL-SQTQNPQGVLILA---EKPKLEQLSFDDDFILVLDRIQDP 114

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKM 202
            NIG ILR+A+A     +I         +    ++  GA   + +  I+NL     + K+
Sbjct: 115 GNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNIAKL 174

Query: 203 HSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                     +         +E K     L+ G E  G+      +      +     I+
Sbjct: 175 QQRKIWL--TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIE 229

Query: 262 ALNVSNAAAVALYITQNHFAK 282
           +LNV+ AA + L+       +
Sbjct: 230 SLNVAQAATIYLFEGLRQRLR 250


>gi|242280259|ref|YP_002992388.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
           2638]
 gi|242123153|gb|ACS80849.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio salexigens DSM
           2638]
          Length = 196

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 5/158 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEH 186
           A R     +++D+V DPHN+ AILRS  AF   GI     Y+ S+   LAK S++   + 
Sbjct: 18  AKRQKDFTLIIDNVWDPHNVSAILRSCDAFGIYGIHLY--YTVSQWPELAKKSSASGKKW 75

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   + ++    +  +   G+Q +    S++ +PL     +   A+IL  E  G  P+  
Sbjct: 76  VERTKHTDPVKMVGGLRDQGYQVLRTGFSETARPLMDFDLSKPSAVILSNEHSGTAPELA 135

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
           E      ++ M G+I++ NVS AAA+ LY      FAK
Sbjct: 136 ELVPDEVYIPMQGMIQSFNVSVAAALILYHGFSQRFAK 173


>gi|283783144|ref|YP_003373898.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
 gi|283441076|gb|ADB13542.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
          Length = 302

 Score =  145 bits (367), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 106/297 (35%), Gaps = 51/297 (17%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           + ++H  ++RR       + S  +   H  Q     + G  +V  A+   +  +  +  T
Sbjct: 7   IDNTHSERVRR-------LVSLGRAKSHDLQR--FLVEGPQSVREAVRYATDSLCDIYVT 57

Query: 75  KNALA------------RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET---- 118
           K+A              R      L     V  V P  + KI       QG+        
Sbjct: 58  KDACEGNEKKSSQFSSLREIVKEALSRSCYVHPVEPSIMQKISADS---QGIVAVANSKS 114

Query: 119 -APLLSPTLDAVRNSQ-----------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
              +       ++ S             +     V DP N GAI+R A    CD ++   
Sbjct: 115 LDDIYFSEFKNLQQSAQVKSKNDFKPLRIAACWQVRDPGNAGAIIRVADVAGCDAVVFVD 174

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
                 ++ L +S +G+L H+P +++ ++ D  +       + I         ++     
Sbjct: 175 DCVSRWNSKLVRSTAGSLFHLPVVQL-SVQDWFECAAKSNIRIIAADIYGTDKIKPVPFP 233

Query: 227 D----------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                       +A++ G E +GL  +  +    ++ + + G  +++N++ +AAV L
Sbjct: 234 KILVNSEVISSSLAILFGNEARGLPKEVLQQVDDISIIPIYGKAESMNLATSAAVML 290


>gi|124026423|ref|YP_001015538.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
 gi|123961491|gb|ABM76274.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
           NATL1A]
          Length = 278

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 108/270 (40%), Gaps = 21/270 (7%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            + +   +K++   +K+    +  +L L G H +  AL         +   +      + 
Sbjct: 4   SKRNPLVRKLRGLLKKT-GREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHEEI 62

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
              +     +  V    ++  +       G+A  T   +     + +  + ++ LD + D
Sbjct: 63  LKKIASRTLLTLVNKNVLETSLST-VTPDGVA--TIFPMQGLPKSGKAPKHILALDRIQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-----SNLTDA 198
           P N+G + RS +A   + +      +   +  + +S++G++ H+P+ RI     S++   
Sbjct: 120 PGNLGNLFRSGLAGEYEVMWLASG-ADPLNQKVLRSSAGSVLHMPFERIGHSSSSSIEML 178

Query: 199 LQKMHSW---GFQTIGL------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + K++      +Q +G       +    KP  +   +    L+LG EG G+    +   T
Sbjct: 179 VSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCT 238

Query: 250 SMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
               L    ++ +LNV+ +AAV  L   Q 
Sbjct: 239 DFVTLPHSSLVDSLNVA-SAAVPLLLERQR 267


>gi|297182173|gb|ADI18344.1| rRNA methylases [uncultured actinobacterium HF4000_04C13]
          Length = 172

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             ++ ++LD V  P+N+GAILR+A A+    +      +P   A  AK+A G   ++ + 
Sbjct: 21  EPEVALLLDSVQTPYNVGAILRTAAAYRVAHLWLAGSTAPPTHAKTAKTALGTGRYLTWT 80

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +++A++ + + G+  +G+   D   P+ +    +K  L  G E +GL   T     
Sbjct: 81  ICEEVSEAIEGIRAAGYGLVGVELADQAVPINEAALPEKACLAFGHEDRGLSATTLAACD 140

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +A +   G + +LNVS AA +ALY     
Sbjct: 141 VVAFIPQLGKVGSLNVSTAAGIALYELNRR 170


>gi|91225285|ref|ZP_01260453.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269968767|ref|ZP_06182757.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91189924|gb|EAS76196.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|269826612|gb|EEZ80956.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 244

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 95/243 (39%), Gaps = 14/243 (5%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + S K+ Q+ AT    A L+ +A   + 
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LASSSLKVKQVFAT---AAFLEQNAGTLNR 62

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
           F         + K     + +       A +  P++   +   L++ LD V+DP N+G I
Sbjct: 63  FDCVEASLDELTKASTLVSNN----AAIAVVEIPSVKEPQAKGLMIALDGVSDPGNLGTI 118

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R A  +    II +   +   +     +  G+   +      +L D    +        
Sbjct: 119 IRVADWYGIKHIIASTDCADPYNPKTISATMGSFGRVQV----SLVDLPSYLEHAKLPVY 174

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           G   + +   + +   + I L++G+E  G+R    +  T    +   G  ++LNV+ A  
Sbjct: 175 GAFLEGESVHKTDFAAEGI-LLMGSESHGVREAAAKFVTDKITIPAFGGAESLNVAMATG 233

Query: 271 VAL 273
           + L
Sbjct: 234 IIL 236


>gi|170717985|ref|YP_001783524.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336]
 gi|168826114|gb|ACA31485.1| tRNA/rRNA methyltransferase (SpoU) [Haemophilus somnus 2336]
          Length = 350

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 19/243 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVK-TVPPQ 99
             ++ E + +YG +   +        I ++  T     ++ D  + L     V   V   
Sbjct: 107 KKNRAEEMKVYGENACLSLFAQRPESIVRVWTTVEMAHKVGDLFSYLASNKKVYHVVDNS 166

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            +  + G E  H G+ +         L   LD  +    L+VL+ V +PHNIG I+R+ V
Sbjct: 167 ELALVSGTE-HHGGICMLVKKRRPFTLHGYLDIPQQKNCLLVLNGVRNPHNIGGIIRTCV 225

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            +    ++         SAV  + A G +E+I  + I     AL K+   G+Q + LSS+
Sbjct: 226 CYGISAVVI-DDVELLHSAVAMRVAEGGMEYIHPLEIDRTETALVKLRQAGYQIVHLSSN 284

Query: 216 S-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAA 270
              K ++Q   +DK+A +L +E         + A  + +L     +      LNVS A  
Sbjct: 285 KHAKTIKQLQLDDKVAFVL-SEAD--TESLADKADELINLSLVNPLKHG---LNVSVATG 338

Query: 271 VAL 273
           + L
Sbjct: 339 ILL 341


>gi|189465794|ref|ZP_03014579.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
           17393]
 gi|189434058|gb|EDV03043.1| hypothetical protein BACINT_02156 [Bacteroides intestinalis DSM
           17393]
          Length = 253

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 16/246 (6%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +   + E +FL  G   V   L +   +   L AT   L++            V  V  +
Sbjct: 17  KKNRKTEKVFLAEGPKLVGDLLGHFPCRF--LAATPEWLSQHPKLPVE----DVSEVSDE 70

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    +   Q LA+   P        + +S L + LD V DP N+G I+R A  F  
Sbjct: 71  DLSRASLLKTPQQVLAIFEQPEYETDASVISHS-LCLALDDVQDPGNLGTIIRLADWFGI 129

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + I  +       +    ++  G +  +       L D +Q +        G   D +  
Sbjct: 130 EHIFCSPNTVDVYNPKTVQATMGGIARVKLHYTP-LPDLIQSLKD--IPVYGTFLDGENM 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVALYI 275
             Q++ ++ + +++G EGKG+  + ++      ++          ++LNV+ A AV    
Sbjct: 187 YTQKLSSNGL-IVMGNEGKGIGKEVEQLINRKLYIPNYPAERETSESLNVAIATAVVCAE 245

Query: 276 TQNHFA 281
            +   A
Sbjct: 246 FRRQAA 251


>gi|313674753|ref|YP_004052749.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312941451|gb|ADR20641.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 231

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 8/163 (4%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E    +   L+  R   + +VL+ + DPHN  AI+RS            +  +     + 
Sbjct: 20  ERKQFIESVLEN-RTDFIRVVLEDIRDPHNANAIIRSGECLGIQHYHIIENENV--FKLG 76

Query: 177 AKSASGALEHIPYIRISN----LTDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIAL 231
              + GA++ +   +         DAL  + S G++ +  S + +    +E+  +  IA+
Sbjct: 77  RGVSRGAIKWVDVHQYPESKTPTADALHDLKSQGYKIVVTSPNKEACAPEELALDQPIAI 136

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++G E  G+  + +  A     L M G  ++ NVS A+ +  Y
Sbjct: 137 VMGNERDGISEEAKSMADEFVRLPMHGFTESYNVSVASGITFY 179


>gi|293390750|ref|ZP_06635084.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951284|gb|EFE01403.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 358

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 20/270 (7%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +K S +    R  +         +K +  ++ E + +YG     A        I +L AT
Sbjct: 92  VKSSQFDDKPREKKTGPLSPRAPEKIKK-NRAEEMKVYGESACFALFEQRPASIVRLWAT 150

Query: 75  KNALARL-DWDANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETA---PL-LSPTLDA 128
                ++ D  + L     V   V    + K+ G E  H G+ +      P  L   LD 
Sbjct: 151 VQMAHKIGDICSYLAANKKVYHIVESDELTKVSGTE-HHGGICMLVKKSHPFTLQGYLDV 209

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
                 L++LD VN+  NIG ILR+   F    ++  +  S + SAV  + A G  E++ 
Sbjct: 210 PHQEDCLVLLDGVNNAQNIGGILRTCAFFGVKNMVVEEAESLN-SAVTLRVAEGGAEYVR 268

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +   +  +AL ++   G+Q I +S+D +   L++    +K   +L +EG        E 
Sbjct: 269 VLETDDTRNALAQLRHAGYQIIHVSNDKNATALDKVRLKNKTVFVL-SEGS--TETLAEK 325

Query: 248 ATSMAHL----HMPGIIKALNVSNAAAVAL 273
           +     L     +      LNVS  A + L
Sbjct: 326 SDEQVRLSFGNPLKNG---LNVSVNAGILL 352


>gi|75761064|ref|ZP_00741063.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491448|gb|EAO54665.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 202

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 84/206 (40%), Gaps = 21/206 (10%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
           + I S+++          + +KK+Q+  ++ +        F+ G H V  AL      + 
Sbjct: 13  KNIDSVQNPRV-------KQWKKLQTKKERDKK----GLFFVEGFHLVEEALKAG--IVT 59

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           +L+ +       DW  N      +  VP + I KI+ +    QG+            +  
Sbjct: 60  ELIVSDQTDLPKDWTVN---DVEMYIVP-EAIVKILRETETTQGVFAVCEKHEK---EVA 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 ++LD + DP N+G I+R+A A     ++  +      ++ + +S  G++  +P 
Sbjct: 113 LTDGKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGSIFRLPI 172

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD 215
           ++  NL + + K+        G + +
Sbjct: 173 VK-GNLEEWVDKLKENNVPVYGTALE 197


>gi|86145741|ref|ZP_01064070.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|85836440|gb|EAQ54569.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
          Length = 244

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 97/245 (39%), Gaps = 18/245 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPH 89
           K +++  QK +         + G   V    N+        L  KN  A  D+   N   
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLELFNSD-------LVVKNVFATADFLSENHAS 59

Query: 90  PFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            F    V    +D +      V    A+    +  PT +  + + L++ LD V+DP N+G
Sbjct: 60  LFEFDCVEAS-LDDLTKASTLVSNNAAIAVVEI--PTFELPKATGLMIALDGVSDPGNLG 116

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  +    I+ +   +   +     +  G+   + ++  ++L + L++       
Sbjct: 117 TIIRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRV-HVSQTDLPEYLEQ---ANLP 172

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G   + +   + E   + I L++G+E  G+R    +  T    +   G  ++LNV+ A
Sbjct: 173 VYGAFLEGESVHKTEFTANGI-LLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMA 231

Query: 269 AAVAL 273
             + L
Sbjct: 232 TGIIL 236


>gi|311064540|ref|YP_003971265.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
 gi|310866859|gb|ADP36228.1| rRNA methylase [Bifidobacterium bifidum PRL2010]
          Length = 289

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 99/280 (35%), Gaps = 29/280 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           DS      +  R  K     N+++R         + G  +V  A+      +  L     
Sbjct: 4   DSRMIDNMKADRVRKVADLANRRTRER--FGRFLIEGPQSVREAVMWMPGAVRDLYVQAA 61

Query: 77  ALARLDWDAN----------LPHPFPVKTVPPQTIDKIVGKEAVHQGLALET-APLLSPT 125
                   A             H   V       + +I       QG+A    A  +  T
Sbjct: 62  DGPDGPRIAGETLTSIVERSQEHRIYVHPASEAVMRRISPD---CQGIAAVGDADAVRAT 118

Query: 126 LD--AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           +    +     +     V  P N G ++R+A A  CD ++         +  + ++ +G+
Sbjct: 119 VQGTQLPEKPFVAAFWQVRGPGNAGTVIRAADAAGCDAVVFVDDCVDMLNPKVIRATAGS 178

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPL-------EQEIKNDKIALIL 233
           L HIP + +  + +          +T+      +D ++P        +Q++     A+I 
Sbjct: 179 LFHIPVMTMG-VDEFFGWAGEKVLRTVAADVYGTDGREPRELPEALRDQDLSGVGKAVIF 237

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G E +GL P        +  + + G  ++LN++ +AA+ L
Sbjct: 238 GNEARGLEPGLLGRCDDIVRIPLYGKAESLNLATSAAIML 277


>gi|88810460|ref|ZP_01125717.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
 gi|88792090|gb|EAR23200.1| rRNA methylase SpoU [Nitrococcus mobilis Nb-231]
          Length = 209

 Score =  145 bits (366), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 6/156 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R   L ++LD VN PHN+ AILR+  A     +       P     +   S++G  + + 
Sbjct: 8   RQPDLRVLLDQVNKPHNLAAILRTCDAVG---VFQAHAVWPGGVPAVHHHSSAGVGKWVN 64

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +   ++  A+Q +H+ G +              Q       A+++GAE  G+     + 
Sbjct: 65  VVAHPDVCSAIQALHNEGLRVYAAHPVAGAVDYRQADYTVPCAVLMGAELWGVSEAACQR 124

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH-FAK 282
                 + M G+  ++NVS AAAV LY  Q    AK
Sbjct: 125 VDEFITIPMFGLGASVNVSVAAAVILYEAQRQRLAK 160


>gi|77360023|ref|YP_339598.1| RNA methyltransferase, TrmH [Pseudoalteromonas haloplanktis TAC125]
 gi|76874934|emb|CAI86155.1| RNA methyltransferase, TrmH family [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 257

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 95/251 (37%), Gaps = 21/251 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + ++  Q     + G   V   LN+P + +  + AT+   A ++         
Sbjct: 22  KLIRQLGQKKYRKQFNQYLVQGEKNVLELLNSPLKAVD-IFATE---AFINTYQAQYLGI 77

Query: 92  PVKTVPPQTIDK---IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                  + + K   +V             A +  P    ++ S L++ LD V+DP N+G
Sbjct: 78  NFICAEEELLTKASTLVSNN-------AAIAIVNMPQAAQLQTSGLILALDGVSDPGNLG 130

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  +    I+T+   + + +     +  G+   +   ++ +L   L  +      
Sbjct: 131 TIIRVADWYGIKHIVTSTDSADAYNPKTISATMGSFVRVSVSQV-DLPAHLATLK---LP 186

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G   D +  +          L++G+E  G+R    +  T    +   G  ++LNV+ A
Sbjct: 187 IYGAFLDGEN-VHNTQFTGSGVLLMGSESHGIREACAKLVTDKITIPAFGQAESLNVAMA 245

Query: 269 AAVAL--YITQ 277
             + L  +  Q
Sbjct: 246 TGIILDNFKRQ 256


>gi|307128548|ref|YP_003880578.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
 gi|306483010|gb|ADM89880.1| putative trmH/spoU family tRNA/rRNA methyltransferase [Candidatus
           Sulcia muelleri CARI]
          Length = 260

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L ++L+ +  P N+GAILR+A A   D I+         +  + +S+ G +     + 
Sbjct: 109 SALFLILEGIEKPGNLGAILRTADAVGIDAILLCNNKVDIFNPNVIRSSLGTIFTNKIV- 167

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           I+N    +  ++    + I  S +        ++IK   +A+I+G+E KGL     +   
Sbjct: 168 IANYKIIISWLNKNKIKIISTSVNKIYNNFFMKKIKKKSLAIIIGSESKGLSDIWFKNKK 227

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +M ++ + G I +LNVS + A+ LY     
Sbjct: 228 NMINIPIKGKIDSLNVSTSTAIILYEILRQ 257


>gi|148656461|ref|YP_001276666.1| tRNA/rRNA methyltransferase SpoU [Roseiflexus sp. RS-1]
 gi|148568571|gb|ABQ90716.1| tRNA/rRNA methyltransferase (SpoU) [Roseiflexus sp. RS-1]
          Length = 432

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 83/241 (34%), Gaps = 7/241 (2%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH----PFPVKTVPP 98
                     G    S AL++    +  +  T   L        L        P   +  
Sbjct: 187 RRARGQFLAEGSLLASRALDD--LPVEDMFYTGELLRDPAGAPLLQRAGDLGVPAYRISD 244

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  I     +   +      +            +++V + +++P N+G  LR+    +
Sbjct: 245 GLMGLITPTRPLPAIVTAIWGRVRDVAAYRPGKQAVILVAEQISNPENLGMTLRT-ADAA 303

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
               +     +        ++A GA+  IP    ++L   + ++ + G   +G + + ++
Sbjct: 304 GAEAVVVAGGADPLHRECVRAARGAVGRIPIYSCADLPAWIGQLRTQGIPVVGATGNVER 363

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            L        +A+++G E  GL   T    +S+  + M     +LNV  AA V LY    
Sbjct: 364 ELYDVDLPIPLAIVVGNETDGLTDATLAACSSLVRIPMAPGQDSLNVGVAAGVLLYDVVR 423

Query: 279 H 279
            
Sbjct: 424 R 424


>gi|148973891|ref|ZP_01811424.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
 gi|145965588|gb|EDK30836.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
          Length = 244

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 86/244 (35%), Gaps = 16/244 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V    N+        L  KN  A  D+ +     
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLELFNSD-------LVVKNVFATADFLSENHAS 59

Query: 91  FPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
                    ++D +      V    A+    +    L   +   L++ LD V+DP N+G 
Sbjct: 60  LIEFDCVEASLDDLTKASTLVSNNAAIAVVEIPKVELPEAKG--LMIALDGVSDPGNLGT 117

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  +    I+ +   +   +     +  G+   +   +    TD    +       
Sbjct: 118 IIRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHISQ----TDLPAYLEQANLPV 173

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G   + +  + +        L++G+E  G+R    +  T    +   G  ++LNV+ A 
Sbjct: 174 YGAFLEGE-SVHKTDFTANGILLMGSESHGIREHAAKFVTDKITIPAFGGAESLNVAMAT 232

Query: 270 AVAL 273
            + L
Sbjct: 233 GIIL 236


>gi|86134820|ref|ZP_01053402.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85821683|gb|EAQ42830.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 177

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
               AV  + ++++LD+V   +NIG++ R++ AF  D I      +   +  + K+A GA
Sbjct: 15  DEFKAVEKTPIIVILDNVRSLNNIGSVFRTSDAFLIDKIYLCGISATPPNKDIHKTALGA 74

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGL 240
            E + +  + +    ++K+   G + + +       +         +K A+++G E KG+
Sbjct: 75  TESVDWEYVEDTLTLVKKLKKEGIKVLSIEQAENSTMLDTFTPKLAEKYAIVMGNEVKGV 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +    +     +   G   +LN+S    V ++
Sbjct: 135 QQEVINASDFCIEIPQLGTKHSLNISVTTGVVIW 168


>gi|258627222|ref|ZP_05722010.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580524|gb|EEW05485.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 244

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 93/242 (38%), Gaps = 13/242 (5%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + +         + G   V   L + + K+  + AT   LA     AN+    
Sbjct: 8   KLIRALGQKKQRKAHGLFLVQGEKNVLE-LASSTLKVQNIFATAEFLAEH---ANVLAGN 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
                    + K+    + +       A +  P ++  +   L++ LD V+DP N+G I+
Sbjct: 64  ECTEAALDDLTKVSTLVSNN----AAIAVVEIPRIEVPKAQGLMIGLDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    II ++  +   +     +  G+   +   ++ +L D    +        G
Sbjct: 120 RLADWYGIQHIIASQDCADPYNPKTISATMGSFGRVQVSQV-DLPD---YLAKANLPVYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              +     +   K + I L++G+E  G+R +  +  T    +   G  ++LNV+ A  +
Sbjct: 176 AFLEGVSVHQTAFKAEGI-LLMGSESHGIREQAAQYVTDKITIPAFGGAESLNVAMATGI 234

Query: 272 AL 273
            L
Sbjct: 235 IL 236


>gi|308044253|ref|NP_001183802.1| hypothetical protein LOC100502395 [Zea mays]
 gi|238014636|gb|ACR38353.1| unknown [Zea mays]
          Length = 347

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  + +V++ ++D  N+ A  RSA A     +      S          + GA + +  
Sbjct: 147 RSYAVCLVVEGLSDFGNVSAAFRSADALGVQSVHVISCDSSKRYRDNRHVSMGAEKWLDI 206

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
              ++  +    +   G++       +    +     +   A+++G E +G+     E +
Sbjct: 207 EIWNSPAECFSALKKRGYRIATTYLGTDSVCVYDMDWSQPTAIVVGNELRGISDDALELS 266

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 267 DLHCSIPMKGMVDSFNVSVAAGILMHHA 294


>gi|224539871|ref|ZP_03680410.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518520|gb|EEF87625.1| hypothetical protein BACCELL_04781 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 253

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 16/246 (6%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +   + E +FL  G   V   L +   +   L AT   L++            V  V  +
Sbjct: 17  KKNRKTEKVFLAEGPKLVGDLLGHFPCRF--LAATPEWLSQHPKLPVE----DVSEVSDE 70

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    +   Q LA+   P        + +S L + LD V DP N+G I+R A  F  
Sbjct: 71  DLSRASLLKTPQQVLAVFEQPEYETDASVISHS-LCLALDDVQDPGNLGTIIRLADWFGI 129

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + I  +       +    ++  G +  +       L D +Q +        G   D +  
Sbjct: 130 EHIFCSPNTVDVYNPKTVQATMGGIARVKLHYTP-LPDLIQSLKD--IPVYGTFLDGENM 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVALYI 275
             Q++ ++ + +++G EG G+  + ++      ++          ++LNV+ A AV    
Sbjct: 187 YTQKLSSNGL-IVMGNEGNGIGKEVEQLINRKLYIPNYPAERETSESLNVAIATAVVCAE 245

Query: 276 TQNHFA 281
            +   A
Sbjct: 246 FRRQAA 251


>gi|311745086|ref|ZP_07718871.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
 gi|126577599|gb|EAZ81819.1| RNA methylase, SpoU family [Algoriphagus sp. PR1]
          Length = 179

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 3/158 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L       +  S L++VLD++   +N+G+  R+  AF  + I+            +
Sbjct: 8   ELERLSVEEYKQIEKSPLVLVLDNIRSLNNVGSAFRTGDAFRVEKIMLCGITGTPPHRDI 67

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKIALIL 233
            K+A GA E + +       DAL+++   G+    L    +       Q    +KIAL+ 
Sbjct: 68  QKTALGATESVEWEHYPQTVDALKELKKQGYTLCALEQVDQSIFLQEYQPDPKEKIALVF 127

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           G E  G+  +  E    +  +   G   +LN+S    +
Sbjct: 128 GNEVFGVEDEVLELCDHVLEIPQLGTKHSLNISVTLGI 165


>gi|223985232|ref|ZP_03635316.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
           12042]
 gi|223962810|gb|EEF67238.1| hypothetical protein HOLDEFILI_02622 [Holdemania filiformis DSM
           12042]
          Length = 239

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 9/228 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +  G  +V A + +  R + +L+     K+               PV+  P + ID+   
Sbjct: 3   WFEGALSVKAVMMSGRRPVIKLVIDQKKKDKDTAFILRQAAQRQIPVERWPREKIDQQAA 62

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
               H G+          ++    ++    + VL+ + DP N+G   R+  A  C G++ 
Sbjct: 63  -GRTHGGILALAGDRNYQSVQECLDAPQPFIAVLEGIEDPFNLGYAFRTLYAAGCTGVLM 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI 224
             R   +    + KS++GA E + +    +L  A+++    G                  
Sbjct: 122 GSRDWQTAQPTIVKSSAGASEQLAWCLCEDLGAAVRQCRQAGCVLYCAQRSDAIDYFDAD 181

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LN--VSNAA 269
            N  I L +G E +GL     E +     +     +++ LN   + AA
Sbjct: 182 FNQPIVLAIGGELRGLSRDVLEQSDQNIVIPYARPVRSALNGTSAVAA 229


>gi|194336255|ref|YP_002018049.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308732|gb|ACF43432.1| tRNA/rRNA methyltransferase (SpoU) [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 180

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 2/149 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+++L ++    N+G++ RSA A   + II +   +      +AK+A GA + + +
Sbjct: 24  PKHPLVLMLHNIRSMWNVGSMFRSADAARIEKIILSGYTATPPRKEIAKTALGAQDTVVW 83

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247
              ++  +A+  M   G +  GL  ++  +P       D  I L++G E  GL  +  ++
Sbjct: 84  EYHADPLEAVCSMKREGVRICGLEITEGSRPYTAVNAGDFPICLVVGNEVDGLENEILDS 143

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +  +   G   +LNV+ AA +AL+  
Sbjct: 144 CDDVLEIPQYGTKHSLNVAVAAGIALFEL 172


>gi|138897021|ref|YP_001127474.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
 gi|196249846|ref|ZP_03148542.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
 gi|134268534|gb|ABO68729.1| rRNA methylase SpoU [Geobacillus thermodenitrificans NG80-2]
 gi|196210722|gb|EDY05485.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
          Length = 245

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIP 188
           R   + ++++ V+DPHN  A+LR+A AF    +      +P S + ++ +    A + + 
Sbjct: 50  RTRYITVLMEAVDDPHNQAAVLRTAEAFGIQDVHVVTGRAPFSPNRLVTRY---ADQWLT 106

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             R  ++  A+  +   G+Q       +   PL +   +    L+ G E  G+  +    
Sbjct: 107 LHRQPDIKTAISDLKQQGYQVYASYLGEGTIPLSEVNVSKPTVLLFGNEHSGVSEEALRL 166

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYI----TQNHFAK 282
           A     + M G +++ N+S AAA+ LY      +    +
Sbjct: 167 ADGTFVIPMYGFVQSFNISVAAALTLYDVTERARRQVGR 205


>gi|323343642|ref|ZP_08083869.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
 gi|323095461|gb|EFZ38035.1| SpoU family RNA methylase [Prevotella oralis ATCC 33269]
          Length = 176

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 3/168 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L            L++VLD V   HN+G++ RS  AF  + +      +   SA 
Sbjct: 7   IEMHRLTVEEFKEAPKLPLVVVLDDVRSLHNVGSVFRSCDAFRVEAVYLCGITATPPSAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALI 232
           + K+A G    + +   S    A++++   G+    +  ++    L+    N   K A++
Sbjct: 67  IHKTALGGENSVEWKYFSQTEKAIRQLRLEGYFCYAVEQAEGSVKLQTLRLNRAKKYAVV 126

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G E KG++    +   S   +   G   +LNVS  A V ++      
Sbjct: 127 FGNEVKGVKQTVIDCCDSCLEIPQLGTKHSLNVSVTAGVVVWEFAKQL 174


>gi|218887307|ref|YP_002436628.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758261|gb|ACL09160.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 344

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 18/191 (9%)

Query: 107 KEAVHQGLALETAPLLSPTL-DAVRNSQ-----LLMVLDHVNDPHNIGAILRSAVAFSCD 160
             + HQG+             D +R++      L++ LD V DP N+G + R+  A    
Sbjct: 152 SHSSHQGVIARVFDAGFAEFGDILRDAPDAPLPLIVALDQVQDPGNVGTLARTLYALGAA 211

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++  +    +     A++A+GALE +P  +++NL  AL +    G+        + +  
Sbjct: 212 GLVVVRHGGAALGGAAARAAAGALEKLPVAKVTNLARALDEADEAGYTIYAAGGAAPETD 271

Query: 221 ----------EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
                       E       L+LG E  G+RP   +       + M     +LNV+ A A
Sbjct: 272 GKPGSGPRNPFTEPLRTPAVLVLGNEDSGIRPNVAKRCHFTLSIPMARDFDSLNVAQAGA 331

Query: 271 VA--LYITQNH 279
           +    +  +  
Sbjct: 332 ILVGCFAARRQ 342


>gi|297624314|ref|YP_003705748.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
           17093]
 gi|297165494|gb|ADI15205.1| tRNA guanosine-2'-O-methyltransferase [Truepera radiovictrix DSM
           17093]
          Length = 221

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ ++V+ PHN+ A+LR+  A     +               ++++ A + +  
Sbjct: 17  RQRDLSVLAENVHKPHNLSAMLRTCDAVGIGVVHALNPT--GGVPTFNETSASAHKWVEL 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +L +A   +   G Q +      +     +        ++ G E  G+  +  + A
Sbjct: 75  RVHGSLAEARAALG--GVQLLAAHFSGRALDYREVDYTRPTCVLFGNEKHGVSREAADAA 132

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +   + M G++++LNVS AAAV L+  Q    +
Sbjct: 133 DAHIVIPMLGMVQSLNVSVAAAVILFEAQRQRLQ 166


>gi|229817954|ref|ZP_04448236.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
           20098]
 gi|229784558|gb|EEP20672.1| hypothetical protein BIFANG_03241 [Bifidobacterium angulatum DSM
           20098]
          Length = 290

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 100/274 (36%), Gaps = 33/274 (12%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANL 87
           D  +  +   +++   +     + G  +V  A+   S  +  +    +      D  A++
Sbjct: 14  DRVRRIAELTRTKGRRKNGRFLIEGPQSVREAVRYASDIVTDIYVAGDEDGIDSDVLADI 73

Query: 88  PH-------PFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQ----- 133
                       V T   + ID I       QG+    +T  L S     V  +      
Sbjct: 74  AQRALDKSADLYVHTATREVIDHISPDA---QGVIAVGDTDKLRSGMKAEVEQASSYSRG 130

Query: 134 -LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             +     V DP N G ++R+A A  CD ++         +  + +S +G+L HIP I +
Sbjct: 131 MRVAAFWQVRDPGNAGTVIRAADAAGCDVVVFVDDCVDMLNPKVIRSTTGSLFHIPVIAM 190

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSK---------KPLE----QEIKNDKIALILGAEGKG 239
               D    M   G                      L+    +E + D  A++ G E +G
Sbjct: 191 G-TNDFFDWMKEQGLDIWAADVYGTRKRKPERLPDVLDAMRGEEHRKDGYAVLFGNEARG 249

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L  KT E    +  + M G  ++LN++ +AA+ L
Sbjct: 250 LNGKTLEQCQRIVSIPMYGKAESLNLATSAAIIL 283


>gi|163787545|ref|ZP_02181992.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159877433|gb|EDP71490.1| rRNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 245

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 96/254 (37%), Gaps = 22/254 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
             K ++S + K ++  +     + GV  +S  LN+   ++ +L  TK     L ++A+  
Sbjct: 6   QIKLIKSLSLK-KNRQELGLFIVEGVKGISEFLNSD-FQLEKLFTTK-----LIFEASSD 58

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V     + I  +          AL       PTL    N  L++ LD + DP N+G
Sbjct: 59  QTIEVSETELKKISSLKNPNT-----ALAIFKTPKPTL--PENVGLIIALDAIRDPGNLG 111

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R    +    ++ +       ++ + ++  G+L  +      N  D    + S    
Sbjct: 112 TIIRLCDWYGVKDLVCSTNTVDCYNSKVVQATMGSLTRVNV----NYLDLESYLESTKVD 167

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNV 265
             G   + +      + N+ + +ILG E  G+             +   G     ++LNV
Sbjct: 168 VFGAFMNGENIYATNLPNEGV-IILGNEANGISEIIASKVDRQITIPQFGENKSTESLNV 226

Query: 266 SNAAAVALYITQNH 279
           +NA A+ L      
Sbjct: 227 ANATAIILSEFSRR 240


>gi|302762835|ref|XP_002964839.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
 gi|300167072|gb|EFJ33677.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
          Length = 321

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 109/293 (37%), Gaps = 35/293 (11%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNN---PSRKIFQ 70
            H + L  ++   K +    + S +    E++ + G + +      A+ N      ++  
Sbjct: 29  QHVSSL--SNPYVKHLVKMRESSSYREATESVLVVGSNLLQELCEFAVTNNTEAPFELEM 86

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDA- 128
           LL  +      +          +     Q +  +   E+V   G+    +     + D  
Sbjct: 87  LLVVEERDFPQELSTFSQRTVFLTASVMQKLAGLKSSESVDAIGVVKLPSSFQKLSPDES 146

Query: 129 -----------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                        N   L++LD + DP N+G +LR+A AF+ DG+          +    
Sbjct: 147 LASAGATLEKWCPNPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTL 206

Query: 178 KSASGALEHIPYIRISNLT-DALQKMHSWGF------QTIGLSSDSKKP-----LEQEIK 225
           +++  A   +P    +     A  K ++  F      Q       SKK      +E+   
Sbjct: 207 RASRAANFRMPIAAGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHSKKNSPEALIEKIKS 266

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + L+LG+EG+GL    +  +     + MPG  ++LNV+    + +++  N
Sbjct: 267 EKSLCLVLGSEGQGLSDPARRGS-QHLTVPMPGKFESLNVAVVGGILMFLLMN 318


>gi|149194690|ref|ZP_01871785.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
 gi|149135113|gb|EDM23594.1| rRNA methylase SpoU [Caminibacter mediatlanticus TB-2]
          Length = 200

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 4/153 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +D+V  PHN+ AI+R+  A +   +    +     +  +     GA + +  
Sbjct: 19  RQDTLRVFMDYVYSPHNLSAIVRTCDAVNVGKLYYRHQKKVKLNNEI---TMGAHKWLFT 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             + ++ +  + +   G+Q +    D       +        ++LG E  G    + + A
Sbjct: 76  EYVEDIENFYKNIKEKGYQVVVTLLDKDTIDFREVDYTKPTLIVLGNEVDGASEVSIKYA 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G+ ++LNVS A AV LY  Q   +
Sbjct: 136 DKKVIIPMYGMSQSLNVSVANAVILYEAQRQRS 168


>gi|171463286|ref|YP_001797399.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192824|gb|ACB43785.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 274

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 108/264 (40%), Gaps = 19/264 (7%)

Query: 27  HRDYKKMQSFNQKSRHTS-QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            ++ + +Q+   K + +        L G+H V   + +P+  +  LL ++  L  L+   
Sbjct: 14  FKEIRNLQATGSKGQKSRMASGQALLEGIHLVQTWVGDPA--LKTLLTSEVGLKNLEISQ 71

Query: 86  NLPHPFPVKTVPP---------QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLM 136
            +     +                +  +V    +   L L  + L +P   A  +   ++
Sbjct: 72  AVYEHLEICPSTKVFQLDGALWDLLSDLVSAPHIAGLLDLPKSTLTTPQSIATLDGD-VV 130

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L  V D  N+G+ILR+A A      I     +   S  + ++  GA + +      +  
Sbjct: 131 ILARVQDAGNVGSILRTAAAAGFTQAIALTGCAHLWSTKVLRAGMGAHKLLDLYEGWSNQ 190

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             L  + +     +  ++D+++ L   ++     +A ++G+EG+G+       A     +
Sbjct: 191 QVLSAITA---PLLAATADAEQDLYSLKKDLLHPVAWVMGSEGQGISEDLLAQA-KGVSI 246

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            +   +++LNVS AAA+ L+ T  
Sbjct: 247 PIDPRVESLNVSTAAAICLFETLR 270


>gi|110636572|ref|YP_676779.1| RNA methylase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279253|gb|ABG57439.1| RNA methylase, SpoU family [Cytophaga hutchinsonii ATCC 33406]
          Length = 176

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 3/160 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            T    + + +++VLD+V   HN+G+  R+A AF  + I          +  + K+A GA
Sbjct: 15  ETFKKTKKTSIIIVLDNVRSLHNVGSFFRTADAFQIEKIYLCGITGTPPNREIHKTALGA 74

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGL 240
            E + +         L K+ + G+Q + +    K    Q+    K +K  LI G E  G+
Sbjct: 75  TESVEWEHAPLAVGFLPKLKANGYQILSIEQTDKSIALQDFSINKENKYVLIFGNEVYGV 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  + +     +   G   + NVS    + L+      
Sbjct: 135 SEEVIKLSDHAIEIPQFGTKHSFNVSVTGGIVLWEFFRRI 174


>gi|327308270|ref|XP_003238826.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
 gi|326459082|gb|EGD84535.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
          Length = 505

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/282 (21%), Positives = 100/282 (35%), Gaps = 76/282 (26%)

Query: 72  LATKNALARLDWDANLP--HPFPVKTVP---PQTIDKIVGKEAVHQGLALETAPLLSPT- 125
            A       +   A         VK V      T+DK+ GK   H G+ LE +PL  P  
Sbjct: 202 YAKSEDEPEIRAIAKYASLAGAQVKHVTGPWKTTLDKMTGKR-PHNGMVLEASPLPKPPV 260

Query: 126 ------------------------------------LDAVRNS------QLLMVLDHVND 143
                                                DA R           ++LD + D
Sbjct: 261 LSFQTVVSKSNSHFLAQLAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILD 320

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAI RSA  F  D I  + + S   S V+ K+A+GA E IP + + +++  +    
Sbjct: 321 PGNLGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQ 380

Query: 204 SWGFQTIGLSSDSKKPLEQ----------------EIKNDKIALILGAEGKGLRPKTQET 247
           + G++     +     +                  E+      L+LG EG GL+ K +  
Sbjct: 381 ANGWKFFAADAPDATLVNDYTRKIPVINSLEALASELTKAPCVLMLGGEGSGLQQKIKNR 440

Query: 248 ATSMAHLHMP---------GIIKALNVSNAAAVAL--YITQN 278
           A S   +              + +LNVS A+A+    ++++ 
Sbjct: 441 ADSFVTIPGAYSANIRDDTAGVSSLNVSVASALLCEAFLSRR 482


>gi|88801799|ref|ZP_01117327.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
           23-P]
 gi|88782457|gb|EAR13634.1| putative SpoU rRNA methylase family protein [Polaribacter irgensii
           23-P]
          Length = 175

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                 + + L+++LD++   +NIGA+ R++ AF  + I      +   +  + K+A GA
Sbjct: 15  EEFKEQKKTPLIVILDNIRSVNNIGAVFRTSDAFLIEKIYLCGICAIPPNKEIHKTALGA 74

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            E + +    +    ++ +     + +        +K  +    K +K A++LG E KG+
Sbjct: 75  TESVTWEYAEDTLTLIENLKKEKIKVLAIEQAEGSTKLDVFFPDKGEKYAIVLGNEVKGV 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +  + A     +   G   +LN+S  A V ++
Sbjct: 135 QQEVVDAADVCIEIPQLGTKHSLNISVTAGVVIW 168


>gi|87125512|ref|ZP_01081357.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
 gi|86166812|gb|EAQ68074.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. RS9917]
          Length = 277

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 109/272 (40%), Gaps = 23/272 (8%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP-SRKIFQLLATKNAL-ARL 81
            R +   ++++S  Q+S    Q   L L G H +   L +   +   +++ T   L A  
Sbjct: 4   SRRNPLVRRLRSLAQRS-GREQEGLLLLEGAHLLQEVLRSQSPQTGLEVIVTPAWLEAHP 62

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
           +  +          V  + +   +    +H        PL     +   ++  ++ LD V
Sbjct: 63  NALSAWEGSVRWHHVSDEVLQAALST--LHPDGVACLLPL-EALPEPPGHTSFVLALDRV 119

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--------IS 193
            DP N+G +LR+A+A   + ++     +   S  + +S+SGA+  +   R        + 
Sbjct: 120 QDPGNLGTLLRTALAADVELVLLASG-ADPLSPKVVRSSSGAVLTLAQERLGPEERQGVR 178

Query: 194 NLTDALQKMHSWGFQTIGL-SSDSKKP-----LEQEIKNDKIALILGAEGKGLRPKTQET 247
            L + LQ +   G Q +     D+  P       +       AL+LG EG GL P+    
Sbjct: 179 ALAERLQDLRCDGLQVVATLVPDASAPVEVLPYWELDWTRPTALVLGNEGSGLHPELLAC 238

Query: 248 ATSMAHLHMPGIIKALNVSNAAAV-ALYITQN 278
            +    L     +++LNV+ AAAV  L   + 
Sbjct: 239 CSHGVTLPHSPRVESLNVA-AAAVPLLLERRR 269


>gi|313159202|gb|EFR58575.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 251

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 91/244 (37%), Gaps = 18/244 (7%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            R  ++       G   +   L     K+ ++ A +   A             V+TV P+
Sbjct: 15  KRGRTEHGLFVAEGEKLIGE-LRGSHLKVRKIFALEGVFA----------GPEVETVAPR 63

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            ++++   +     LA+   P     + ++   +L + LD V +P N+G I+R A  F  
Sbjct: 64  DMERLSLLKTAANSLAIVETPRYGLDMRSLAG-RLTLALDDVQNPGNLGTIVRLADWFGI 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
             I+ ++  +   +  + ++  GA+  +     ++L   L    + G    G   + +  
Sbjct: 123 ADIVCSEASADCFNPKVVQATMGAILRVRVHY-TDLGAFLHDAGAAGLPVYGTFLEGENI 181

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALYI 275
               +  + +  ++G EG+G+        T    +          ++LNV+ A  +    
Sbjct: 182 YGTTLTEEGVV-VMGNEGRGISQAAARAVTHKLFIPPYPTDRRGSESLNVAMATGIVCSE 240

Query: 276 TQNH 279
            +  
Sbjct: 241 FRRR 244


>gi|260889769|ref|ZP_05901032.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
 gi|260860375|gb|EEX74875.1| 23S rRNA methyltransferase [Leptotrichia hofstadii F0254]
          Length = 256

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 84/211 (39%), Gaps = 6/211 (2%)

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
             +++  ++     D    +     +  +     D+ V  +   QG+    +  L+   D
Sbjct: 45  FNKIIVKESKFEYFDEKYEISRHDNLTILKDNLFDE-VSTQENSQGIIFLYSKNLNTIED 103

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +   +++LD + DP N G I+R+ +A +   +I TK      +    ++    +  +
Sbjct: 104 IQGD---VVILDDIQDPGNAGTIIRTMIAANFQNLILTKGSVDVYNPKTVRATMSGIFKL 160

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
             I  +   + ++ ++   +  I  +        E+       A I G EG G+     E
Sbjct: 161 NIIYET-PENIVKFLNKKNYLKIATALHEDSVSYEKIELRKNNAFIFGHEGGGVSDYLIE 219

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +   A + + G I++LNVS A  + LY  +
Sbjct: 220 NSHIKAIIPIYGNIESLNVSVATGIFLYKMR 250


>gi|154495145|ref|ZP_02034150.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
           43184]
 gi|154085695|gb|EDN84740.1| hypothetical protein PARMER_04193 [Parabacteroides merdae ATCC
           43184]
          Length = 256

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 9/207 (4%)

Query: 78  LARLDWDANLPHPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           LA+  W A +    P K +     D I         Q +            +A  ++ L+
Sbjct: 46  LAKPSWMA-MQGNIPAKELLEAEGDDIRKASFLKNPQDVLAVFKRPDWSLDEADPSTSLV 104

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD + DP N+G I+R A  F  + I+ +   +   S    ++  GAL H+     + L
Sbjct: 105 LALDGIQDPGNLGTIIRLADWFGIEHIVCSPDTADVFSPKTVQATMGALAHVKVHY-TEL 163

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L+   +      G   D +    +E+  + I +++G EG G+RP+ ++      ++ 
Sbjct: 164 EDYLKAQAARQIPLFGTFLDGENMYTKELSANGI-IVMGNEGNGIRPQIEKLINQKLYIP 222

Query: 256 MPG----IIKALNVSNAAAVALYITQN 278
                    ++LNV+ A AV     + 
Sbjct: 223 SFPPERETSESLNVAIATAVICAEFRR 249


>gi|260772956|ref|ZP_05881872.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14]
 gi|260612095|gb|EEX37298.1| RNA methyltransferase TrmH family [Vibrio metschnikovii CIP 69.14]
          Length = 244

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 16/244 (6%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +++  QK +         + G   V   L + +  +  + AT   L            
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLE-LTHSAFNVQHVFATAEFLNSH------AEN 59

Query: 91  FPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
               T    ++D++      V    A+    +  P ++  +   L++ LD V+DP N+G 
Sbjct: 60  VASYTCTEASLDELTKASTLVSNNAAIAVVEI--PKIEVPKAQGLMIALDGVSDPGNLGT 117

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  +    I+ +   +   +     +  G+   +      +L D    +       
Sbjct: 118 IIRVADWYGIKHIVASVDCADPYNPKTISATMGSFGRVQV----SLVDLPHYLAQANLPV 173

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            G   + +           I L++G+E  G+R    +  T    +   G  ++LNV+ A 
Sbjct: 174 YGAFLEGESVHTTSFSAQGI-LLMGSESHGIRESAAQWVTDKITIPAFGGAESLNVAMAT 232

Query: 270 AVAL 273
            + L
Sbjct: 233 GIIL 236


>gi|319957044|ref|YP_004168307.1| tRNA guanosine-2'-o-methyltransferase [Nitratifractor salsuginis
           DSM 16511]
 gi|319419448|gb|ADV46558.1| tRNA guanosine-2'-O-methyltransferase [Nitratifractor salsuginis
           DSM 16511]
          Length = 217

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 4/160 (2%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L A +   L + LD V+D  N+ A++R+A A     I    R +P    V      GA
Sbjct: 18  EALLAAKQPCLQIFLDDVHDSRNMSAVIRTADAVGVLDIF-YARNNPQHVPVHTLVTQGA 76

Query: 184 LEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGL 240
              +   RI      + L+K    G Q +    +                L+LG E +G+
Sbjct: 77  HRWLRRHRIPYEERAEFLRKKREEGMQIVVTHLEEASLDFRDVDYTRPTMLVLGNEREGV 136

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            P+    A+    + M G++++LN+S AAA+ LY  +   
Sbjct: 137 SPEVLAEASHSVIIPMHGMVQSLNISVAAALILYEAERQR 176


>gi|289178492|gb|ADC85738.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 309

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 34/270 (12%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---- 85
            +++     + +H  +     + G   V  AL    + I  +    +        A    
Sbjct: 33  IRRISELTNR-KHRQKAGKFLIEGPQCVREALTWQPQIIQDVYVRTDGADPDSPIASTAL 91

Query: 86  -NLPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRN---------SQ 133
             L      + +    + + V     H  QG+           L++ R+           
Sbjct: 92  GKLAGEAMEERIHVHKMTQEVEHRVSHDAQGVFAVA------DLNSCRDLLGRVPQTPHP 145

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L     + DP N G ++RSA A  CD ++         +  + ++ +G+L H+P + + 
Sbjct: 146 FLAAFWQMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMD 205

Query: 194 NLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIK-------NDKIALILGAEGKGLRPK 243
                           +      ++ K P+                A++ G E +GL  +
Sbjct: 206 ERA-FFDLCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTE 264

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +       + + G  ++LN+  +AAV L
Sbjct: 265 LLDECAMSVSIPIYGKAESLNLGTSAAVML 294


>gi|218961471|ref|YP_001741246.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730128|emb|CAO81040.1| putative tRNA/rRNA methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 269

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 1/146 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  ++ ++ D++    N+G++ R+A       II        E + + K+A G  + + +
Sbjct: 115 KAKRITVICDNLRSVFNVGSLFRTAECLGIGKIIVCGITPTPEHSNMPKTAMGTEKLVAW 174

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               + T+A+   H  GF    L + D+ K + Q +    +A+++G E  G+     E  
Sbjct: 175 QYFPSTTEAIAFCHQEGFFIYALETIDNAKSVFQTVYQFPLAIVIGNEALGIESSILELC 234

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                L   G   +LNV  A  + LY
Sbjct: 235 DEFITLPQLGWKNSLNVGVATGIVLY 260


>gi|302382926|ref|YP_003818749.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193554|gb|ADL01126.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 268

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/259 (23%), Positives = 108/259 (41%), Gaps = 10/259 (3%)

Query: 26  NHRDYKKMQSFNQ-KSRHTSQPENLFLYGVHTVSAALNNPS---RKIFQLLATKNALARL 81
           +  D  ++ ++   + R  +  + LF+     V   L + +   R    L+A        
Sbjct: 7   DDPDDARIAAYRDIRERDLTGRQGLFIAEGEVVLRTLLSDASLCRPRSVLIAANRVDGLR 66

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMV 137
                +P   PV  V    +D+IVG   +H+G+       L+ TLDA    +    +++ 
Sbjct: 67  GLLETVPAGTPVFAVGQDVLDRIVGF-PLHRGILALGEKPLARTLDAVLADLPEQAVVVA 125

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
              + +  NIG + R+A AF    ++T  R          + + GA+   P     +L  
Sbjct: 126 ASEIGNHDNIGGLYRNAAAFGAAAVLTDDRCGDPFYRKSIRVSVGAVLRTPGAAAPSLEA 185

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            +  + +  F+ I LS  + +PL+      + AL+LG+EG GL        T    + M 
Sbjct: 186 LVDALEAARFEVIALSPSAIEPLKGLKPGGRRALLLGSEGPGLPASVMAR-TRTVGIPMA 244

Query: 258 GIIKALNVSNAAAVALYIT 276
           G   +LNVS  +A+ LY  
Sbjct: 245 GGFDSLNVSVTSALGLYQL 263


>gi|332662188|ref|YP_004444976.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331002|gb|AEE48103.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 209

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 4/160 (2%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL---AKSASG 182
           L   R   L ++L++V+DPHN+GA+LRS  +     I         ++  L    ++++G
Sbjct: 12  LAQNRQFDLTVILENVDDPHNVGAVLRSCDSVGIREIFVLYTRPGLQNHKLELGKRTSAG 71

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLR 241
           + + I       +   ++ +     +          K L +       AL+ G E  GL 
Sbjct: 72  SRKWIDVYLYREVDACMEHVRRNYQRVYATHLAHDAKSLYELDLAQSAALMFGNEADGLS 131

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 A     +   G+ ++LNVS A AV+LY      +
Sbjct: 132 ELALSQADGNFIIPQVGMAQSLNVSVACAVSLYEAFRQRS 171


>gi|85057856|ref|YP_456772.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789961|gb|ABC65693.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 234

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 93/231 (40%), Gaps = 23/231 (9%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +   +YG H +  A  N +  +  +  +         +++L              D++  
Sbjct: 26  QQFLVYGDHLIEQAQKNNA--VVAIFTSNEEKPGTFIESSLMKELSQ---TKTVFDQM-- 78

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
                        P+    L     S  ++VLD + DP N+G ++RSA AF  + +  + 
Sbjct: 79  ---------ALCKPISENNLL----SDKILVLDDIQDPANLGVLMRSASAFGFNQVFASF 125

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK 225
             +        +S+ GAL  +   R  +    L+++    +         S   ++   K
Sbjct: 126 HSADFYHEKTIRSSQGALFSLSLKR-GSTKSFLEEVKEQNYSIFSAFPQKSNITIKDAKK 184

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           + K  L+LG EG+G+  +T+  +    ++     +++LNV+ A ++ +Y+ 
Sbjct: 185 HPKKVLVLGNEGQGISSETEGLSDYFVNI-FTQNVESLNVAVAGSILMYLL 234


>gi|60593968|pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
 gi|60593969|pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes In Complex With The
           Cofactor Adomet
 gi|11141830|gb|AAG32066.1| rRNA methyltransferase [Streptomyces viridochromogenes]
          Length = 287

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 97/262 (37%), Gaps = 13/262 (4%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +++ + E+  + +        RN R +++ Q+        ++     + GV  +S A+ +
Sbjct: 1   MARSRGERTPAAR----RITSRNAR-FQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEH 55

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
                  L   +  L++   +           + P  + ++  K      +      + +
Sbjct: 56  GWPVRTLLYDGQRELSKWARELLRTVRTEQIAMAPDLLMELGEKNEAPPEVVAVV-EMPA 114

Query: 124 PTLDAV--RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
             LD +  R   L ++ D    P NIG+I+RSA A    G+I     +        +S++
Sbjct: 115 DDLDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSST 174

Query: 182 GALEHIPYIRISN---LTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           G+L  +P +R+ +   + D ++   + G     +G        +          L++G E
Sbjct: 175 GSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNE 234

Query: 237 GKGLRPKTQETATSMAHLHMPG 258
             GL    +        + M G
Sbjct: 235 TAGLSNAWRTLCDYTVSIPMAG 256


>gi|313204707|ref|YP_004043364.1| tRNA/rRNA methyltransferase (spou) [Paludibacter propionicigenes
           WB4]
 gi|312444023|gb|ADQ80379.1| tRNA/rRNA methyltransferase (SpoU) [Paludibacter propionicigenes
           WB4]
          Length = 250

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 96/254 (37%), Gaps = 15/254 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K + S +QK +   +       G   V   L       FQ        A L+  + L  
Sbjct: 7   IKLINSLSQK-KFRDETGLFVAEGTKLVLD-LAQA----FQCSILAATAAWLEEYSRLEA 60

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +  +    + KI  +++    LA+   P  S   D+++   L + LD V DP N+G 
Sbjct: 61  D-EIIEIDENELSKISNQKSPQGVLAVFAKPNHSWDKDSLKEK-LSLALDDVQDPGNLGT 118

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F    I  +   + + +    ++  GAL  +    +S +   L   H      
Sbjct: 119 IIRIADWFGITDIFCSTHSADAYNTKTVQATMGALARVKVHTVSLVDFLLSVAHE--IPV 176

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GII--KALNV 265
            G   D +   ++ +    I +++G EG G+  + ++  T    L     G    ++LNV
Sbjct: 177 YGTFMDGENIYDKTLTKHGI-IVMGNEGNGISDEIEKLVTERLLLPNFPLGQATSESLNV 235

Query: 266 SNAAAVALYITQNH 279
             A A+     +  
Sbjct: 236 GVATALVCAEFRRR 249


>gi|42523228|ref|NP_968608.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575433|emb|CAE79601.1| putative tRNA/rRNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
          Length = 258

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 1/148 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L+ VLD++    N+G+I R+A     + I             + K+A G  E++ +   
Sbjct: 107 PLVFVLDNIRSAFNVGSIFRTAECLGAEKIYLCGYTPLPTQWKVEKTAMGTQEYLAWEEA 166

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             L + L+++   G++ + L ++ S   L ++ +++  A +LG E  GL P+  +    +
Sbjct: 167 PKLLECLEELKDEGYRIVALETAASASDLFEKFESEPTAFVLGNERFGLDPEVLKIIDEV 226

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + + G   +LNV   AAVA +     
Sbjct: 227 RIIPLRGRKNSLNVGVTAAVAGFEWMRQ 254


>gi|225707400|gb|ACO09546.1| Hypothetical tRNA/rRNA methyltransferase slr1673 [Osmerus mordax]
          Length = 454

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/332 (16%), Positives = 107/332 (32%), Gaps = 74/332 (22%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
            + K     +   ++ S  +   +      + L G   +  AL   +       ++   L
Sbjct: 114 RFEKASPGDKRLARLVSVARSRTYRELQGKILLEGRRLICDALAAGANPQMVFFSSVEKL 173

Query: 79  ARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----- 132
           + L  D         VK    +    +V      QG+    +      L   R+      
Sbjct: 174 SELPLDKLKRATLVKVKFEDIKIWSDLVAP----QGVIAIFSRPDPSRLVFPRDQMGQSV 229

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++ D+V DP N+G ILR A A  C  ++ TK    +    + +SA GA   +P    
Sbjct: 230 PLSLICDNVRDPGNLGTILRCAAAAGCQDVLLTKGCVDAWEPKVLRSAMGAHFRLPIFPS 289

Query: 193 SNLTDALQ----------------------------------KMHSWGFQTIGL------ 212
            +  D  +                                  ++ + G+  +        
Sbjct: 290 LDWKDIQKQLPSPVTVHVADNCSSAERAGQEVGDLEVQESKRQLKAGGYGWVSTRPNRKY 349

Query: 213 ------SSDSKKPLEQEIKNDKI--------------ALILGAEGKGLRPKTQETAT--- 249
                  SDS++  + E+   K+              AL++G E  GL  +  + A    
Sbjct: 350 VRYEDYDSDSEQDSDAELSLPKVDTRLYHERWAQSNTALVIGGETHGLSLEALQLAEKTL 409

Query: 250 -SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + +   + +LN + AA++ L+  +   
Sbjct: 410 GQRLFIPVVPWVDSLNSAMAASILLFEGRRQL 441


>gi|114799577|ref|YP_759058.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114739751|gb|ABI77876.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 269

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 7/224 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD-WDANLPHPFPVKTVPPQTIDKIV 105
               + G  T+   L     ++  L   +  LA L    + +P   PV       +D + 
Sbjct: 32  GRFIVEGKVTLETLLARSRFEVESLFLCETRLAPLAGILSEVPEGVPVYVAAQGVMDAVA 91

Query: 106 GKEAVHQGLAL---ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           G   +H+G+     + A L    +         ++L  +++  N+GA  R+A AF  D +
Sbjct: 92  GF-PMHRGVLACGRKGAALSPQNVLPKDGPSTALILSELSNHDNVGACFRNAAAFGADAV 150

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLE 221
           +              + +SGA   +P+ +     D +    + G +   L+  S   PL 
Sbjct: 151 LLDAASCDPLYRKAIRVSSGAALWLPFSQGGTGADLIAAAEAAGHEVWALTPRSDAAPLP 210

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                +++AL++GAEG GL  +    A     + M     ++NV
Sbjct: 211 SLKVPERVALLMGAEGPGLPAEMIARA-RPVRIAMTEGFDSVNV 253


>gi|119477702|ref|ZP_01617852.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
           proteobacterium HTCC2143]
 gi|119449205|gb|EAW30445.1| tRNA (guanosine-2'-O-)-methyltransferase [marine gamma
           proteobacterium HTCC2143]
          Length = 239

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L ++ D+V+   N+ AI+R+A A     +         +      +A G+  ++  
Sbjct: 16  RQPDLTVLTDYVHKGRNLSAIVRTADAVGIGSVHCV--VGDKDYRSFRGTALGSHRYVEV 73

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R + L   +  + S GFQ +     +      +        L++GAE  GL     E A
Sbjct: 74  HRYTELNQPVTALKSRGFQVVAAHVSATAVDYHEVDYTAPTVLLMGAEKNGLSADGLEAA 133

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT--QNHFA 281
                + M G++++ NVS AA + L     Q   A
Sbjct: 134 DIHITVPMVGMVESFNVSVAAGIILNEARHQRQIA 168


>gi|332663063|ref|YP_004445851.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331877|gb|AEE48978.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 253

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 96/255 (37%), Gaps = 12/255 (4%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++  K  +  QK +  S+ +     G   V   +  P  ++  +LA    L         
Sbjct: 4   KNKIKYITALQKKKFRSELQCFLAEGDKIVRELVAFPQWELECILAVPEWLENHRGLFA- 62

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                + ++    ++KI   +  +Q +A+   P      +   ++ L + LD + DP N+
Sbjct: 63  GRKIEIISITTAELEKISTLQTPNQVMAIVKMPSEFDW-NTHFSTDLALYLDGIQDPGNL 121

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH--SW 205
           G ILR A  F    +  +       +  + ++  G+   I    +      L  +     
Sbjct: 122 GTILRIADWFGILQVFLSPDCVELYNPKVIQATMGSFLRIKTAIVE-----LPALKVGIP 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP--GIIKAL 263
           G  T G     +   E ++++  + LI+G EGKG+R +          +     G  ++L
Sbjct: 177 GLTTYGALLSGENVFETKVQHPAL-LIIGNEGKGIREEYISLIDRAISIPRHADGGAESL 235

Query: 264 NVSNAAAVALYITQN 278
           N   A  +   + +N
Sbjct: 236 NAGVATGIICGVMRN 250


>gi|84385230|ref|ZP_00988262.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|84379827|gb|EAP96678.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
          Length = 244

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 18/245 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD-ANLPH 89
           K +++  QK +         + G   V    N+        L  KN  A  D+   N   
Sbjct: 8   KLLRALGQK-KQRKAHGLFLVQGEKNVLELFNSD-------LVVKNVFATADFLSENHAS 59

Query: 90  PFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
            F    V    +D +      V    A+    +  PT +    + L++ LD V+DP N+G
Sbjct: 60  LFEFDCVEAS-LDDLTKASTLVSNNAAIAVVEI--PTFELPEATGLMIALDGVSDPGNLG 116

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  +    I+ +   +   +     +  G+   +   +    TD    +      
Sbjct: 117 TIIRVADWYGIKHIVASSDCADPYNPKTISATMGSFGRVHVSQ----TDLPAYLEQANLP 172

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             G   + +   + E   + I L++G+E  G+R    +  T    +   G  ++LNV+ A
Sbjct: 173 VYGAFLEGESVHKTEFTANGI-LLMGSESHGIREHAAKYVTDKITIPAFGGAESLNVAMA 231

Query: 269 AAVAL 273
             + L
Sbjct: 232 TGIIL 236


>gi|260591998|ref|ZP_05857456.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
 gi|260536282|gb|EEX18899.1| RNA methylase, SpoU family [Prevotella veroralis F0319]
          Length = 182

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 72/173 (41%), Gaps = 8/173 (4%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E + L            L++VLD V   +N+G++ RSA AF  + I      +   +A 
Sbjct: 7   IEMSRLSIEEFKEAEKLPLIVVLDDVRSLYNVGSVFRSADAFRIEAIYLCGITATPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKI---- 229
           + K+A G  + + +       DA++ +H  G     +     S K    ++  +      
Sbjct: 67  IHKTALGGEDSVDWKYFERTEDAVEDLHKKGVFVYSVEQVEHSTKLHTLDLNAESTTNNS 126

Query: 230 --ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A+I+G E KG++    + + +   +   G   +LNVS  A + ++      
Sbjct: 127 HYAIIMGNEVKGVKQSVVDMSDACLEIPQFGTKHSLNVSVTAGIVIWEFAKQL 179


>gi|78187067|ref|YP_375110.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
 gi|78166969|gb|ABB24067.1| SpoU rRNA methylase family protein [Chlorobium luteolum DSM 273]
          Length = 182

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P   P  D      ++++L ++    N+G++ R+A     + I+ +   +      ++K+
Sbjct: 19  PGEYPPTD---RHPVVLLLHNIRSMWNVGSLFRTADCAGIEKILLSGYTATPPRKEISKT 75

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND-KIALILGAEG 237
           A GA   +P+  I +   A+ +M + G +  GL  ++  +P       D  + L+LG E 
Sbjct: 76  ALGADLSMPWEYIPDPHRAVLEMKASGRKVFGLEITEGSRPYTSLSVVDFPLCLVLGNEV 135

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+       +  +  +   G   +LNVS AA VAL+     F
Sbjct: 136 QGIDDSLLRLSDGVLEIPQYGTKHSLNVSVAAGVALFELVRVF 178


>gi|297243612|ref|ZP_06927543.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888363|gb|EFH27104.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 302

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 104/297 (35%), Gaps = 51/297 (17%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           + ++H  ++RR       + S  +   H  Q     + G  +V  A+      +  +  T
Sbjct: 7   IDNTHSERVRR-------LVSLGRAKSHDLQR--FLVEGPQSVREAVRYAIDSLCDIYVT 57

Query: 75  KNALA------------RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET---- 118
           K+A              R      L     V  V    + KI       QG+        
Sbjct: 58  KDACEGNEKESSQFSSLREIVKEALSRSCYVHPVESSIMQKISADS---QGIVAVANSKS 114

Query: 119 -APLLSPTLDAVRNSQ-----------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
              +       ++ S             +     V DP N GAI+R A    CD ++   
Sbjct: 115 LDDIYFSEFKNLQQSAQIKSKNDFKPLRIAACWQVRDPGNAGAIIRVADVAGCDAVVFVD 174

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
                 ++ L +S +G+L H+P +++ ++ D  +       + I         ++     
Sbjct: 175 DCVSRWNSKLVRSTAGSLFHLPVVQL-SVQDWFECAAKSNIRVIAADIYGTDKIKPVPFP 233

Query: 227 D----------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                       +A++ G E +GL  +  +    ++ + + G  +++N++ +AAV L
Sbjct: 234 KILVNSEVISSSLAILFGNEARGLPKEVLQQVDDISIIPIYGKAESMNLATSAAVML 290


>gi|167752349|ref|ZP_02424476.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216]
 gi|167660590|gb|EDS04720.1| hypothetical protein ALIPUT_00593 [Alistipes putredinis DSM 17216]
          Length = 249

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 91/249 (36%), Gaps = 27/249 (10%)

Query: 40  SRHTSQPENLFLYGVH-----TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
            + +     LF+   H       ++AL     ++ ++ A +           L     V+
Sbjct: 14  DKRSRTEHGLFVAEGHKFIGELCTSAL-----RVRKIFALEG----------LFEGGEVE 58

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           TV  + ++++   +     LAL   P      D     +L++ LD V +P N+G I+R A
Sbjct: 59  TVSSREMERLSLLKTPSDSLALVEIPHHPFRPDTA-QRELVLALDQVQNPGNLGTIIRLA 117

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    I+ +   +   +  + ++  GA+  +     + L   L +         G   
Sbjct: 118 DWFGIPEIVCSPTTADCYNPKVVQATMGAILRVKVHYTA-LEPYLAQARERNIPVYGTFL 176

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAA 270
           + +      +    I L +G EG+G+ P      +    +          ++LNV+ A A
Sbjct: 177 EGENIYSTPLTPGGIVL-MGNEGQGIAPAAARHVSHKLFIPPYPADRNGSESLNVAIATA 235

Query: 271 VALYITQNH 279
           V     +  
Sbjct: 236 VVCAEFRRQ 244


>gi|237726961|ref|ZP_04557442.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229433817|gb|EEO43894.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 226

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 21/236 (8%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF---PVKTVPPQTIDKIVGKE 108
            G   V   L         L+AT N L        + HP     +  V  + + +   ++
Sbjct: 3   EGHKLVGDLL--GYFPCKLLIATSNWLK-------INHPVTANEIIEVTQEELSRASLQK 53

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
              + LA+   P      + ++ S L + LD V DP N+G I+R A  F  + I  +   
Sbjct: 54  TPQEVLAVFVQPSYDLNPEVIK-SSLCLALDDVQDPGNLGTIIRLADWFGIEHIFCSAGT 112

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   +    ++  GAL  +      +L   ++ +        G          + +    
Sbjct: 113 ADVYNPKTVQATMGALARVKVHYC-SLPQLIESL--ADIPVYGTFLSGNIIYAESLSAHG 169

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNVSNAAAVALYITQNHF 280
           + +++G EGKG+ P+ ++      ++          ++LNV+ A AV     +   
Sbjct: 170 L-IVMGNEGKGVSPEVEKLINKKLYIPNYPQERETSESLNVAIATAVVCSEFRRRL 224


>gi|167627889|ref|YP_001678389.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597890|gb|ABZ87888.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 250

 Score =  143 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 89/258 (34%), Gaps = 27/258 (10%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++ KK+ S   + +         + G+     A++   R+    + T         D   
Sbjct: 10  KEIKKLHSPQGRKKSI----YYIIEGLRCCDEAISRLPREDIIAIVTTGDRIDYPIDKK- 64

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                   +  + ++++   +   QG+ +      + + D V     ++VLD + DP NI
Sbjct: 65  ------YILSEKDLNELTQTQ-NSQGVLILAKKKDTSS-DFVFKDDFILVLDRIQDPGNI 116

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--MHSW 205
           G ILR+A+A     I+         +    ++  GA   + +    NL+       +   
Sbjct: 117 GTILRTAIAVGLTEIVLIDGTVDPFNPKAIRAGMGAQFSLKFRYFENLSAVRNYPTLKER 176

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA----HLHMPGIIK 261
               +    +      +E K     L+ G E  G+                 +     I+
Sbjct: 177 KIW-LTTPHEGVSCYSEEFKLSNSVLVFGEEANGIE-------DFSVGEKTMIPTLSNIE 228

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNV+ AA + L+     
Sbjct: 229 SLNVAQAATIYLFEGLRQ 246


>gi|149371594|ref|ZP_01891010.1| RNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
 gi|149355221|gb|EDM43781.1| RNA methyltransferase, TrmH family protein [unidentified
           eubacterium SCB49]
          Length = 259

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 22/250 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+ +   K ++  Q       G   +   +     ++     T+         AN  H +
Sbjct: 25  KLITSLSKKKYREQHGFFIAEGPKVIDEFI-AEGLELHFHFTTE-------IVANETHVY 76

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
               V    + KI      +  LA+   P  +  +       + +VLD V DP N+G I+
Sbjct: 77  --HQVTSGELKKISKLTNPNTSLAVFKIPKKNAAI----TKGVRVVLDGVQDPGNLGTII 130

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F    +I +K      +  + ++  G+L  +    +    D    +        G
Sbjct: 131 RLCDWFGVSQLICSKDTVDCFNPKVVQATMGSLARVVISYV----DIKSLLQETTLPIYG 186

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNA 268
              +      ++I+ D   L++G EG G+  +     T    +   G     ++LNV+ A
Sbjct: 187 GVLEGVSLYSEKIEEDSY-LVVGNEGNGISEEIIAILTHKITIPQYGASQKTESLNVATA 245

Query: 269 AAVALYITQN 278
            A+ L     
Sbjct: 246 TAILLSEVMR 255


>gi|20799558|gb|AAM28546.1|AF494517_1 putative tRNA/rRNA methyl transferase [Tomato big bud phytoplasma]
          Length = 210

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 6/148 (4%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S  +++LD + DP N G +LRSA AF    I  +       +    + + GA+ ++ + R
Sbjct: 51  SDKILILDDIQDPSNAGLLLRSACAFGFKNIFFSNNSVDIYNEKTIQVSQGAIFNLDFFR 110

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-----KNDKIALILGAEGKGLRPKTQE 246
             +L + L  +    +  IG        L   +     K  KIALILG EG+G+   +++
Sbjct: 111 -GDLANFLSFLKKNDYFVIGTCGHENNFLSNNLINICSKYYKIALILGNEGQGISVISRQ 169

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            +  +  +    ++++LNV+ A ++ ++
Sbjct: 170 KSDYLIAIPTTNLVESLNVAVAGSIIMF 197


>gi|183601746|ref|ZP_02963116.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241190756|ref|YP_002968150.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196162|ref|YP_002969717.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219352|gb|EDT89993.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249148|gb|ACS46088.1| rRNA methylase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250716|gb|ACS47655.1| rRNA methylase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295793745|gb|ADG33280.1| rRNA methylase [Bifidobacterium animalis subsp. lactis V9]
          Length = 301

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 34/270 (12%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---- 85
            +++     + +H  +     + G   V  AL    + I  +    +        A    
Sbjct: 25  IRRISELTNR-KHRQKAGKFLIEGPQCVREALTWQPQIIQDVYVRTDGADPDSPIASTAL 83

Query: 86  -NLPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRN---------SQ 133
             L      + +    + + V     H  QG+           L++ R+           
Sbjct: 84  GKLAGEAMEERIHVHKMTQEVEHRVSHDAQGVFAVA------DLNSCRDLLGRVPQTPHP 137

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L     + DP N G ++RSA A  CD ++         +  + ++ +G+L H+P + + 
Sbjct: 138 FLAAFWQMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMD 197

Query: 194 NLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIK-------NDKIALILGAEGKGLRPK 243
                           +      ++ K P+                A++ G E +GL  +
Sbjct: 198 ERA-FFDLCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTE 256

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +       + + G  ++LN+  +AAV L
Sbjct: 257 LLDECAMSVSIPIYGKAESLNLGTSAAVML 286


>gi|300727684|ref|ZP_07061071.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
 gi|299775048|gb|EFI71653.1| SpoU rRNA methylase family protein [Prevotella bryantii B14]
          Length = 183

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 8/175 (4%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A+E   L            L++VLD V   +N+G++ RS  AF  + +      +     
Sbjct: 6   AIEMNRLSVEQFKEAEKLPLIVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITACPPHP 65

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--------SDSKKPLEQEIKN 226
            + K+A G  + + +    N  DA+ ++H  G+    +          + +  + Q   +
Sbjct: 66  EIHKTALGGEDSVEWKYFKNTEDAVNELHKKGYYVYSIEQVEGSTKLQNLEVDIRQHNTD 125

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              A+I+G E KG++ +  + +     +   G   +LNVS  A + ++    + A
Sbjct: 126 QHYAMIMGNEVKGVKQQVVDMSDGCLEIPQFGTKHSLNVSTTAGIVIWEFAKNLA 180


>gi|212640614|ref|YP_002317134.1| rRNA methylase [Anoxybacillus flavithermus WK1]
 gi|212562094|gb|ACJ35149.1| rRNA methylase [Anoxybacillus flavithermus WK1]
          Length = 238

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 5/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-SAVLAKSASGALEHIP 188
           R   + ++ + V+DPHN  A+LRSA AF    +      +P E +  + + A    + + 
Sbjct: 45  RTRYITILTEAVDDPHNQAAVLRSAEAFGIQDVHVVTGAAPFEPNKWVTRHAD---KWLN 101

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             + S++  A++ +   G+Q       +   PLEQ   +    L+ G E +G+  +    
Sbjct: 102 VHKHSSIEQAIRHLQQNGYQVYASYLGEGTIPLEQIDVSKPTVLLFGNEHRGVSEEALAL 161

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M G +++ N+S AAA++LY     
Sbjct: 162 ADGKFVIPMNGFVQSFNISVAAAISLYEITKR 193


>gi|219683722|ref|YP_002470105.1| rRNA methylase [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621372|gb|ACL29529.1| possible rRNA methylase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 292

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 90/270 (33%), Gaps = 34/270 (12%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA---- 85
            +++     + +H  +     + G   V  AL    + I  +    +        A    
Sbjct: 16  IRRISELTNR-KHRQKAGKFLIEGPQCVREALTWQPQIIQDVYVRTDGADPDSPIASTAL 74

Query: 86  -NLPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAPLLSPTLDAVRN---------SQ 133
             L      + +    + + V     H  QG+           L++ R+           
Sbjct: 75  GKLAGEAMEERIHVHKMTQEVEHRVSHDAQGVFAVA------DLNSCRDLLGRVPQTPHP 128

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L     + DP N G ++RSA A  CD ++         +  + ++ +G+L H+P + + 
Sbjct: 129 FLAAFWQMRDPGNAGTVIRSADAAGCDAVVLVGDCVDIFNPKVIRATTGSLFHLPVLAMD 188

Query: 194 NLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIK-------NDKIALILGAEGKGLRPK 243
                           +      ++ K P+                A++ G E +GL  +
Sbjct: 189 ERA-FFDLCRERDTTVLAADVYGTEGKPPVSLPDLLRNRELVEGSKAVLFGNEARGLTTE 247

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +       + + G  ++LN+  +AAV L
Sbjct: 248 LLDECAMSVSIPIYGKAESLNLGTSAAVML 277


>gi|294155366|ref|YP_003559750.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291599973|gb|ADE19469.1| tRNA/rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 243

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 89/233 (38%), Gaps = 20/233 (8%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H +  A++     + ++    ++   L ++           +  + +
Sbjct: 24  YREKEGLFIIEGEHLIDEAID--KNIVVEIFEIGSSSKILKYERT---TLITYELAKKVL 78

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           D         Q +      +     + +     ++ LD + DP NIG I+R   +F  D 
Sbjct: 79  DA-----QSPQSVFAVCKIVK----NNIVLGDKIVFLDDLQDPGNIGTIIRLCKSFDIDT 129

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-L 220
           +I   +     +    +++ G+      +++    + L K+ S  F  I    D +   L
Sbjct: 130 LIV--KNFDIYNPKCLRASQGSFFKTNIVQVDKYDE-LSKLMSKDFSIISTLLDKEATEL 186

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +      K  L+LG EG G+     + +    ++ +    ++LNV+  AA+ L
Sbjct: 187 KNFTFPKKSVLVLGNEGNGISQNAIDLSKHKVYIPIS--FESLNVATCAAIIL 237


>gi|302756691|ref|XP_002961769.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
 gi|300170428|gb|EFJ37029.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
          Length = 321

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 110/293 (37%), Gaps = 35/293 (11%)

Query: 18  SHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQL-- 71
            H + L  ++   K +    + S +    E++ + G + +      A+ N +   F+L  
Sbjct: 29  QHVSSL--SNPYVKHLVKMRESSSYREATESVLVVGSNLLQELCEFAVTNNTEAAFELEM 86

Query: 72  -LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDA- 128
            L  +      +          +     Q +  +   E+V   G+    +     + D  
Sbjct: 87  LLVVEERDFPQELSTFSQRTVFLTASVMQKLAGLKSSESVDAIGVVKLPSSFQKLSPDES 146

Query: 129 -----------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                        N   L++LD + DP N+G +LR+A AF+ DG+          +    
Sbjct: 147 LASAGATLEKWCPNPHRLLILDGIQDPGNLGTLLRTATAFAWDGVFLLPGCCDPFNDKTL 206

Query: 178 KSASGALEHIPYIRISNLT-DALQKMHSWGF------QTIGLSSDSKKP-----LEQEIK 225
           +++  A   +P    +     A  K ++  F      Q       SKK      +E+   
Sbjct: 207 RASRAANFRMPIAAGTWPQIQAFGKANAMKFYAGIPEQVHSSRLHSKKNSPEALIEKIKS 266

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              + L+LG+EG+GL    +  +     + MPG  ++LNV+    + +++  N
Sbjct: 267 VKSLCLVLGSEGQGLSDPARRGS-QHLTVPMPGKFESLNVAVVGGILMFLLMN 318


>gi|223992883|ref|XP_002286125.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977440|gb|EED95766.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 180

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 12/170 (7%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           PL    + +       ++LD ++DP N+G +LRS  A     +I         +    +S
Sbjct: 9   PLSDTDVPSKEMPPFYLILDGLSDPGNVGTLLRSCAASQVTALILLPNSCDVWNPKAVRS 68

Query: 180 ASGALEHIPYIRISNLTD---ALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           A GA   +P + ++N  D   AL +  S   FQ   +    +   +        A+ILG 
Sbjct: 69  AMGASFRVPVLELTNADDKDGALDQKKSLAHFQVDWI----RHTKDDSKSGGGSAIILGR 124

Query: 236 EGKGLRPKTQET----ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           EG+GLR + +      + S  H+ M   +++LN +   +V ++     ++
Sbjct: 125 EGEGLRREVRAAIKQGSISTVHIPMADGVESLNAAVCGSVIMFERMRQWS 174


>gi|134302313|ref|YP_001122282.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050090|gb|ABO47161.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 250

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 98/264 (37%), Gaps = 24/264 (9%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +     +   + G+     AL   P ++I  +L T+ A     
Sbjct: 6   QKLYKEIKKLHSSQGRKK----SQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                        +  +  + +  +    QG+ +       P L+ +  +   ++V D +
Sbjct: 62  PLNKK------YIITEKDFEAL-SQTQNPQGVLILA---EKPKLEQLSFDDDFILVFDRI 111

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--L 199
            DP NIG ILR+A+A     +I         +    ++  GA   + +  I+NL     +
Sbjct: 112 QDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNI 171

Query: 200 QKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            K+          +         +E K     L+ G E  G+      +      +    
Sbjct: 172 AKLQQRKIWL--TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLS 226

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            I++LNV+ AA + L+       +
Sbjct: 227 DIESLNVAQAATIYLFEGLRQRLR 250


>gi|325285057|ref|YP_004260847.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324320511|gb|ADY27976.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 219

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSESAVLAKSASGALEHIP 188
           R + + + ++ V   HN  A++RS  AF      +   +YS          A GA + + 
Sbjct: 29  RTNYITVAIEDVFQMHNTSAVIRSCDAFGVQTAHLIESKYSEPLDK---NIAMGAQQWVT 85

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQET 247
             R +  T+ +  +   G++ I  S  +   L  + K +DKIAL  G E  GL  +  + 
Sbjct: 86  TPRYNTTTECIDTLRKDGYKIIATSPHTDSYLLDDFKIDDKIALFFGTEKSGLSQEVLDK 145

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     + M G  ++LN+S +AA+ L
Sbjct: 146 ADGYVKIPMVGFSESLNISVSAAILL 171


>gi|255690187|ref|ZP_05413862.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
 gi|260624301|gb|EEX47172.1| RNA methyltransferase, TrmH family [Bacteroides finegoldii DSM
           17565]
          Length = 255

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 94/250 (37%), Gaps = 18/250 (7%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKT 95
           ++ +   +       G   V   L     +           A   W  + P+ +   +  
Sbjct: 16  EQKKIRKEERVFLAEGPKLVGDLLEYFPCRFL--------AATSLWLQSHPNIYAGEIAE 67

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
           V  + + +    +   Q LA+   P  + T D  R+S L + LD V DP N+G I+R A 
Sbjct: 68  VSQEELSRASLLKTPQQVLAILEQPQYTLTPDIARHS-LCLALDDVQDPGNLGTIIRLAD 126

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            F  + II ++      +    ++  G +  +     ++L D ++          G   D
Sbjct: 127 WFGIEDIICSQNTVDVYNPKTVQATMGGIARVRVHY-TSLPDFIRS-QGKEIPVFGTFLD 184

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAV 271
            +   EQ +  + + +++G EG G+  + +       ++          ++LNV+ A AV
Sbjct: 185 GQNMYEQPLSANGL-IVMGNEGNGIGKEVEALINRKLYIPNYPQGQETSESLNVAIATAV 243

Query: 272 ALYITQNHFA 281
                +   A
Sbjct: 244 ICAEFRRQAA 253


>gi|163754275|ref|ZP_02161398.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
 gi|161326489|gb|EDP97815.1| RNA methyltransferase, TrmH family protein [Kordia algicida OT-1]
          Length = 242

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 95/251 (37%), Gaps = 22/251 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           + R  K + S +QK ++          G   +   LN+   ++  L +    L       
Sbjct: 3   SKRQIKIITSLHQK-KYRKSTGLFVAEGKKVIQEFLNS-KFELDSLFSVDANL------- 53

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
              +   V  +    + KI   +  ++ LAL            V    L++ LD V DP 
Sbjct: 54  -FANNSKVTLISEAELKKISFLKTPNKALAL----FKIAENAVVNAEGLIVALDDVRDPG 108

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R    F    ++ ++      +  + ++  G+L  +  +  +NL + L +    
Sbjct: 109 NLGTIIRLCDWFGVTQLVCSEATVDCYNPKVIQATMGSLTRVNVVY-ANLENYLSETK-- 165

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII---KA 262
                G   D K   +  +  D I L++G E  G+  K     T    +   G I   ++
Sbjct: 166 -LPVFGAFMDGKNVYKTNLPKDGI-LVMGNEANGVSEKISTLITEKIAIPRFGEIQQTES 223

Query: 263 LNVSNAAAVAL 273
           LNV+ A  + L
Sbjct: 224 LNVAMATGILL 234


>gi|304373121|ref|YP_003856330.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309312|gb|ADM21792.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 256

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 18/227 (7%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             AL    +K+ ++  T NA  ++    N      +  +    + KI   E+  + +   
Sbjct: 39  ELALEY--KKVIKIYTT-NANLQIKSFKNEQ----IILISHSIMKKITSYESASE-VVAL 90

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              L    L+     + +++L+++ DP N+G I+R+  AF    I +        ++ + 
Sbjct: 91  CNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSG---VDFYNSKVI 147

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKND-KIALILG 234
            ++ GA+   P +++ NL+  L K+H   F +IG   S  + K  +  I+N+ K A+I G
Sbjct: 148 SASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIFG 207

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279
            E  G+    ++      ++ +    ++LN++NA A+ LY   TQN+
Sbjct: 208 NESSGISAALEKIIQKQIYIPIA--FESLNIANATAILLYEFSTQNY 252


>gi|295132801|ref|YP_003583477.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294980816|gb|ADF51281.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 215

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 23/232 (9%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID-KIVGKEAV 110
            G+  +   LN+  R + +L A++     +  D         + V  +  D K +     
Sbjct: 3   EGIKVIRELLNSDFR-LDKLFASETIFD-ISKD---------QFVLTEERDLKKISFLKT 51

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            Q  AL    +    L  +    L + LD V DP N+G I+R    F    ++ +     
Sbjct: 52  PQ-TALGLFKIPQQNLGVLE--DLTVALDGVRDPGNLGTIIRLCDWFGVKNLVCSTDTVD 108

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  + +S  G++  +  +   NL++    + S    + G   D +  + Q+    K  
Sbjct: 109 CFNPKVIQSTMGSITRVNVVY-KNLSEF---LQSQDIVSYGTFMDGEN-VYQKRLQQKSV 163

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQNH 279
           L+LG E  G+ P+ +   +    +   G     ++LNV+ A A+ L   + +
Sbjct: 164 LVLGNEANGINPEIENLISEKISIPQFGKSQETESLNVATATAIFLSEFRRN 215


>gi|160884561|ref|ZP_02065564.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
 gi|293373263|ref|ZP_06619623.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|156110300|gb|EDO12045.1| hypothetical protein BACOVA_02546 [Bacteroides ovatus ATCC 8483]
 gi|292631786|gb|EFF50404.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 254

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 18/247 (7%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPP 98
           +   + E +FL  G   V   L +   +   L AT +        DAN      +  V  
Sbjct: 18  KKIRKEERVFLAEGPKLVGDLLGHFPCRF--LAATPSWFQEHPGIDAN-----ELVEVSQ 70

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + + +    +   Q LA+   P  +   +AVR S L + LD V DP N+G I+R A  F 
Sbjct: 71  EDLSRASLLKTPQQVLAIFEQPQYTLDPEAVR-SSLCLALDDVQDPGNLGTIIRLADWFG 129

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            + II ++      +    ++  G +  +     ++L D ++ +        G   D K 
Sbjct: 130 IEHIICSQNTVDVYNPKTIQATMGGIARVKVHY-TSLPDFIRSLGDT--PVFGTFLDGKN 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALY 274
             EQ +  + + +++G EG G+  +         ++          ++LNV+ A AV   
Sbjct: 187 MYEQPLSANGL-IVMGNEGNGIGKEVATLINRKLYIPNYPAGQETSESLNVAIATAVICA 245

Query: 275 ITQNHFA 281
             +   A
Sbjct: 246 EFRRQAA 252


>gi|289704520|ref|ZP_06500955.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
           luteus SK58]
 gi|289558778|gb|EFD52034.1| RNA 2'-O ribose methyltransferase substrate binding [Micrococcus
           luteus SK58]
          Length = 298

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 82/260 (31%), Gaps = 28/260 (10%)

Query: 43  TSQPENLFLYGVHTVSAALNNP--------------SRKIFQLLATKNALARLDWDANL- 87
             +     + G       L                  + + Q+  +   + R    A L 
Sbjct: 28  RRRTGTFLVEGPQACREVLRAHLGEGPAAAAGQWRAGQVLAQVYVSVGLVDRDPALAELV 87

Query: 88  ----------PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
                          V+    + +  +         +A+   P        +  ++L  V
Sbjct: 88  ARVRDRPTPGGERVLVREASDEVLTAMADAVTGQDIVAVARMPQPQTVEAVLEEARLAAV 147

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L  V DP N G ++R+A A   D ++ T       +  + +S +G+L H+P +       
Sbjct: 148 LCRVQDPGNAGTVIRAADAAGADAVVLTPGSVDPFNPKVVRSTAGSLFHLPVVTAVPAEA 207

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMAHL 254
           A     + G Q           L+           A + G E +GL       A     +
Sbjct: 208 AAAAARAAGLQVWAADGYGADRLDALAPGLVAAPTAWLFGNEAQGLDDGELALADRRVAV 267

Query: 255 HMPGIIKALNVSNAAAVALY 274
            + G  ++LNV  AA V LY
Sbjct: 268 PLYGAAESLNVGTAATVCLY 287


>gi|330723253|gb|AEC45623.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 256

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 18/227 (7%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             AL    +K+ ++  T NA  ++    N      +  +    + KI   E+  + +   
Sbjct: 39  ELALEY--KKVIKIYTT-NANLQIKSFKNEQ----IILISHSIMKKITSYESASE-VVAL 90

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              L    L+     + +++L+++ DP N+G I+R+  AF    I +        ++ + 
Sbjct: 91  CNKLDVVKLENFLQHKRIVILENIQDPGNLGTIIRNCSAFDFALIYSG---VDFYNSKVI 147

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKND-KIALILG 234
            ++ GA+   P +++ NL+  L K+H   F +IG   S  + K  +  I+N+ K A+I G
Sbjct: 148 SASKGAIFKTPILKVENLSQILDKLHQNNFVSIGTFLSKKAAKIKDFVIENEQKYAIIFG 207

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279
            E  G+    ++      ++ +    ++LN++NA A+ LY   TQN+
Sbjct: 208 NESSGISAALEKIIQKQIYIPIA--FESLNIANATAILLYEFSTQNY 252


>gi|325300674|ref|YP_004260591.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
 gi|324320227|gb|ADY38118.1| tRNA/rRNA methyltransferase (SpoU) [Bacteroides salanitronis DSM
           18170]
          Length = 251

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 96/244 (39%), Gaps = 13/244 (5%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++  + +     G   V   L +   +I  +  TK  L R        H   +  V  +
Sbjct: 16  KKNRKEEQAFLAEGYKLVEELLGHFPCRI--VAGTKAWLDRHPHL----HAEEIFEVSEE 69

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +I  ++   + LA+   P+    ++   +S L + LD V DP N+G I R A  F  
Sbjct: 70  ELTRISLQKNPQEVLAVFEQPVYEWNINTAAHS-LCLALDDVQDPGNVGTIARIADWFGI 128

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + +  ++  +   +    ++  GA+  + +    NL + ++   +      G   + K  
Sbjct: 129 EHVFCSQGTADIYNPKTVQATMGAIARVQFHYC-NLPEFIRSASAQDIPLFGTFLNGKDI 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYI 275
             + ++N  I +I+G EG G+     +  T    +          ++LNV+ A A+    
Sbjct: 188 YGENLENHGI-IIMGNEGNGISTPIAQCITHRLFIPNYPQGRSTSESLNVAIATAIVCAE 246

Query: 276 TQNH 279
            +  
Sbjct: 247 FRRR 250


>gi|260803601|ref|XP_002596678.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
 gi|229281937|gb|EEN52690.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
          Length = 471

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 22/225 (9%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT----KNALARLDWDAN 86
           ++ ++ N++ +      N FL+G+     AL    R   QL       +    R++   +
Sbjct: 237 RQQRNENRQLKFAPAVGNEFLFGIAPCLLALQQGQRSFSQLFLKDAPYQTGADRIEEIES 296

Query: 87  LPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLD----------AVRNSQL 134
           L     VK V  P   + K++G +  HQG+ LE     +  L                 +
Sbjct: 297 LADEKEVKVVRIPKHRMTKMIG-DGTHQGVCLEATKRRAEPLSLEDISPTVDVDSERPPI 355

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +VL+ V DP N GAILRS+     D II +       + V++K++SGA+E      + +
Sbjct: 356 WLVLNEVQDPMNFGAILRSSYYLGVDKIIASSSNCCPLTPVVSKASSGAMETQTVYSMED 415

Query: 195 LTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILG 234
           +   LQ + S G+  +G        +          +    L+LG
Sbjct: 416 IPALLQNLSSSGWTVVGTVAATEDVEGTVVCGNFALSGPTVLVLG 460


>gi|163786475|ref|ZP_02180923.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
 gi|159878335|gb|EDP72391.1| tRNA/rRNA methyltransferase [Flavobacteriales bacterium ALC-1]
          Length = 176

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 77/161 (47%), Gaps = 3/161 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L        + S ++++LD++   +NIG++ R++ AF  + I      +      +
Sbjct: 8   ELDRLEVSEFKDAKKSPIIIILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHNDI 67

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALIL 233
            K+A G+ E + +  + N  D ++K+   G +   +  ++S   L + +   N K A + 
Sbjct: 68  RKTALGSTETVDWEYVENTLDLVEKLKVEGVKVCSIEQAESATMLNKFLPQPNTKYAFVF 127

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G E KG+  +  + + ++  +   G   +LN+S +A V ++
Sbjct: 128 GNEVKGVSQEVVDISDTVIEIPQYGTKHSLNISVSAGVVIW 168


>gi|319953644|ref|YP_004164911.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422304|gb|ADV49413.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 176

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                 S L++VLD++   +NIG++ R+A AF  + I      +      + K+A GA +
Sbjct: 17  FKEASKSPLIIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAQPPHKDIHKTALGATD 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEGKGLRP 242
            + +  + N  D +Q +      TI +          +    K++K ALI G E KG+  
Sbjct: 77  SVVWEYVENTMDVIQSLKENKVTTIAIEQAENAVFLNDFKVSKDEKYALIFGNEVKGVAQ 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +   +  ++  +   G   +LN+S +A V ++
Sbjct: 137 EVVSSCDTVVEIPQYGTKHSLNISVSAGVVVW 168


>gi|298372824|ref|ZP_06982814.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275728|gb|EFI17279.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 182

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 3/161 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   +       +    L+++LD+V   HNIGA+LR+A AF  + ++     +   +  +
Sbjct: 9   EIRRVSVDEYRRMAKIPLVLILDNVRSMHNIGAVLRTADAFCIEKVVLCGITATPPNNEI 68

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALIL 233
            KSA GA   + +         ++ +   G++ + +  +    PL+        K AL+ 
Sbjct: 69  HKSALGAEFSVRWEYSPEAQIPVRTLRDEGYRVLAVEQTQDSMPLDSLHIEGAAKYALVF 128

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G E  G+   T +       +   G   +LNVS A  + ++
Sbjct: 129 GNEVSGVEQATIDLCDGSVEIPQYGTKHSLNVSVACGIVVW 169


>gi|126663147|ref|ZP_01734145.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
 gi|126624805|gb|EAZ95495.1| putative SpoU rRNA methylase family protein [Flavobacteria
           bacterium BAL38]
          Length = 175

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L  A L    +D  + +    ++++LD +   HNIG++ R++ AF  + I      +   
Sbjct: 4   LANAELERKNIDEFKEAQKTPIIVILDDIRSLHNIGSVFRTSDAFLIEKIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KI 229
           +  + K+A GA E + +    ++ + + ++     +   +       +  + + +   K 
Sbjct: 64  NKEIHKTALGATETVTWEYAKDVLEVVHQLKQENVKVYSVEQTENAIMLDDFQPETNTKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ALI G E KG+  +    +  +  +   G   +LN+S +A + ++
Sbjct: 124 ALIFGNEVKGVSQEAINLSDGVIEIPQLGSKHSLNISVSAGIVIW 168


>gi|145349369|ref|XP_001419108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579339|gb|ABO97401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 306

 Score =  142 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 17/224 (7%)

Query: 64  PSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---ETAP 120
             R+   L     A A     A       V   P   + K  G      GL       +P
Sbjct: 84  EGREAKTLFVADWAEAPAGIRAKR-----VIRAPASVLKKCAGVNNAD-GLDAVGEFASP 137

Query: 121 LL---SPTLDAVRNSQLLMVL--DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           ++      +D  +   ++ VL  + V DP N+G + R+AVAF  D +          +  
Sbjct: 138 VIMNAREFVDGAKQRDVVRVLAVEGVQDPGNLGTLTRTAVAFGWDTVALLPGTCDPFNDK 197

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALIL 233
             ++A GA   + ++   +  D          +       +K+ ++ E      K  L+L
Sbjct: 198 AMRAARGATFRVDFVAFDSFDDLASAGRELNMELYAAEPSAKEDVDPERAKAVAKACLVL 257

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G EG+GL             + M G +++LNV  A  V +Y+ Q
Sbjct: 258 GTEGQGLSDDALRAC-KPVAIPMSGEMESLNVGIAGGVLMYLMQ 300


>gi|298253912|ref|ZP_06977499.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532055|gb|EFH71030.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 302

 Score =  142 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 105/297 (35%), Gaps = 51/297 (17%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           + ++H  ++RR       + S  +   H  Q     + G  +V  A+   +  +  +  T
Sbjct: 7   IDNTHSERVRR-------LVSLGRAKSHDLQR--FLVEGPQSVREAVRYVTDSLCDIYVT 57

Query: 75  KNALA------------RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET---- 118
           K+A              R      L     V  V    + KI       QG+        
Sbjct: 58  KDACEGNEKESSQFSSLREIVKEALSRSCYVHPVESNIMQKISADS---QGIVAVANSKS 114

Query: 119 -APLLSPTLDAVRNSQ-----------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
              +       ++ S             +     V DP N GAI+R A    CD ++   
Sbjct: 115 LDDIYFSEFKNLQQSAQVKVKNDFKSLRIAACWQVRDPGNAGAIIRVADVAGCDAVVFVD 174

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
                 +A L +S +G+L H+P +++ ++ D  +       + I         ++     
Sbjct: 175 DCVSRWNAKLVRSTAGSLFHLPVVQL-SVQDWFECAAKANIRVIAADIYGTDKIKPVPFP 233

Query: 227 D----------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                       +A++ G E +GL  +  +    ++ + + G  +++N++ +AAV L
Sbjct: 234 KILVNSEVISSSLAILFGNEARGLPKEVLQQVDDISIIPIYGKAESMNLATSAAVML 290


>gi|302848864|ref|XP_002955963.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
           nagariensis]
 gi|300258689|gb|EFJ42923.1| hypothetical protein VOLCADRAFT_109989 [Volvox carteri f.
           nagariensis]
          Length = 312

 Score =  142 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 8/190 (4%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           K V   T+ +++         ALE       ++   R   +L +++ + D  N+ A+ R+
Sbjct: 58  KVVDAATVVRLLAP------FALEERVQRIESVVQNRTFSVLPIVEGLYDMGNLAAVCRT 111

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A     +    R       V  ++A+GA + +      +  + L  + S G+Q I   
Sbjct: 112 ADALGYGAVHCINRGDVKY-KVSQRTAAGADKWLDVKMWDSTAECLAAVRSAGYQIITTH 170

Query: 214 -SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            S S   +E+       A ILG E  G+  +    A + A + M G++++ N+S A+A+ 
Sbjct: 171 LSQSAITIEEVDWTRPTAFILGNEKFGVSEEAVAAADACAIIPMTGMVESFNISVASALI 230

Query: 273 LYITQNHFAK 282
           +Y  +    +
Sbjct: 231 MYEARQQRLR 240


>gi|332530820|ref|ZP_08406746.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332039732|gb|EGI76132.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 271

 Score =  142 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 106/261 (40%), Gaps = 14/261 (5%)

Query: 24  RRNHRDYKKMQSFNQKS---RHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            R++   K+++   Q +   R +     +++ G H   AAL    R    +LA    L  
Sbjct: 11  SRDNPLLKELRRLAQDNTAYRKSGTAGRVWVEGDHLARAALLRGWRPALAVLAESAWLHW 70

Query: 81  LDWDANLPHPFPVKTV--PPQTIDKIVGKEA--VHQGLALETAPLLSPTLDAVRNSQLLM 136
                +  H    +TV  P      I   E+    QGL L       P    V++    +
Sbjct: 71  GGEFGDASHTGAERTVLLPDALFASISALESFSPAQGLGLV---FDLPVEATVQSGLSTV 127

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VLD V D  N+G+ILRSA AF C  ++  K  +   S  + ++  GA   +  +      
Sbjct: 128 VLDRVQDAGNVGSILRSAAAFGCAQVLALKGTAALWSPKVLRAGMGAHFGLRLVEGL-AA 186

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           D L  +       +  SS   + L +       A +LG EG+G+       A     +  
Sbjct: 187 DDLAVLQ---VPLLVTSSHQGELLHRAHLPWPCAWVLGHEGQGVGEALMARAALKLRIAQ 243

Query: 257 PGIIKALNVSNAAAVALYITQ 277
           PG  ++LNV+ AAA+ L+ + 
Sbjct: 244 PGGEESLNVAAAAAICLHASA 264


>gi|325279827|ref|YP_004252369.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324311636|gb|ADY32189.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 223

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 70/175 (40%), Gaps = 8/175 (4%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           +   ++    L   L   R   + +VL+ +   HN  A++RSA  +    +   +  +  
Sbjct: 12  RDFVVDEKNALFDRLIQERTDYVTVVLEDLFQSHNQSAVMRSADCYGIQHVHLIENRN-- 69

Query: 172 ESAVLAKSASGALEHIPYIRISNLTD----ALQKMHSWGFQTIGLSSDSKKPL--EQEIK 225
              + +  + GA + +   R   L +     + ++ + G++ +  +  +      + +++
Sbjct: 70  SYDMTSTVSQGARDWLSIHRHKELENNTQATIDQLRAEGYRILATTPHANDIFVDDIDLE 129

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             K+A   G E  GL       A     + M G  ++LNVS  AA+ +Y      
Sbjct: 130 KGKMAFFFGTELTGLSDLVIGQADEFVKIPMYGFTESLNVSVCAAITMYSVTRRL 184


>gi|298484410|ref|ZP_07002568.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|299145878|ref|ZP_07038946.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
 gi|298269434|gb|EFI11037.1| RNA methyltransferase, TrmH family [Bacteroides sp. D22]
 gi|298516369|gb|EFI40250.1| RNA methyltransferase, TrmH family [Bacteroides sp. 3_1_23]
          Length = 254

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 16/246 (6%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +   + E +FL  G   V   L +   +   L AT +                +  V  +
Sbjct: 18  KKIRKEERVFLAEGPKLVGDLLGHFPCRF--LAATPSWFQEHPGIDASE----LVEVSQE 71

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    +   Q LA+   P  +   +AVR S L + LD V DP N+G I+R A  F  
Sbjct: 72  DLSRASLLKTPQQVLAIFEQPQYTLDPEAVR-SSLCLALDDVQDPGNLGTIIRLADWFGI 130

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + II ++      +    ++  G +  +     ++L D ++ +        G   D K  
Sbjct: 131 EHIICSQNTVDVYNPKTIQATMGGIARVKVHY-TSLPDFIRSLGDT--PVFGTFLDGKNM 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYI 275
            EQ +  + + +++G EG G+  +         ++          ++LNV+ A AV    
Sbjct: 188 YEQPLSANGL-IVMGNEGNGIGKEVATLINRKLYIPNYPAGQETSESLNVAIATAVICAE 246

Query: 276 TQNHFA 281
            +   A
Sbjct: 247 FRRQAA 252


>gi|237718577|ref|ZP_04549058.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452037|gb|EEO57828.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|295084275|emb|CBK65798.1| rRNA methylases [Bacteroides xylanisolvens XB1A]
          Length = 254

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 16/246 (6%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +   + E +FL  G   V   L +   +   L AT +                +  V  +
Sbjct: 18  KKIRKEERVFLAEGPKLVGDLLGHFPCRF--LAATPSWFQEHPGIDASE----LVEVSQE 71

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    +   Q LA+   P  +   +AVR S L + LD V DP N+G I+R A  F  
Sbjct: 72  DLSRASLLKTPQQVLAIFEQPQYTLDPEAVR-SSLCLALDDVQDPGNLGTIIRLADWFGI 130

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + II ++      +    ++  G +  +     ++L D ++ +        G   D K  
Sbjct: 131 EHIICSQNTVDVYNPKTIQATMGGIARVKVHY-TSLPDFIRSLGDT--PVFGTFLDGKNM 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYI 275
            EQ +  + + +++G EG G+  +         ++          ++LNV+ A AV    
Sbjct: 188 YEQPLSANGL-IVMGNEGNGIGKEVATLINRKLYIPNYPAGQETSESLNVAIATAVICAE 246

Query: 276 TQNHFA 281
            +   A
Sbjct: 247 FRRQAA 252


>gi|313675661|ref|YP_004053657.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312942359|gb|ADR21549.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 246

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 102/248 (41%), Gaps = 14/248 (5%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++  K     Q  +   + E   + G       LN+   K+  L+ +++ L+R   + N 
Sbjct: 4   KNNTKFIKSLQLKKFRQKEELFIVEGAKNTLELLNSSY-KLKYLIVSEDFLSRHQKEINS 62

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
               P+  V  + +  +   ++    LA+  E AP    +      +   +VLD + DP 
Sbjct: 63  SEIEPI-IVKEKELSALGAFQSNTDALAVVHEKAPSKYDS------NGFDLVLDDIRDPG 115

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R A  +    II ++  +   +  +  ++ G++      R  +L + L    + 
Sbjct: 116 NLGTIIRLADWYGIKNIICSETTAEFYNPKVISASMGSIFRTNLYR-RDLKEFLG--KNQ 172

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
             +  G   + K   + + + D + L++G E  G++ +     +    +   G  ++LN 
Sbjct: 173 NRKIYGALLEGKNVHQVKFEADGL-LVIGNESHGIQKELIPLISEKVTIPKIGQAESLNA 231

Query: 266 SNAAAVAL 273
           + A A+  
Sbjct: 232 AMATAIIC 239


>gi|120435451|ref|YP_861137.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117577601|emb|CAL66070.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 217

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 10/178 (5%)

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              T+D +       Q         L   + A R   L +V   V   HN  A++RS   
Sbjct: 3   DKNTLDHL-------QSFLTPRRKALFEKVLAQRTDHLTVVAQDVYQLHNTSAVVRSCDV 55

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-D 215
           F    I   +   P    +  + A GA + +   R ++ T  L+ +   G++ +  S  D
Sbjct: 56  FGIQNIHVIEEKIP--RRIDKEIAMGAQKWVDINRYTSTTTCLKNLKKKGYRIVATSPHD 113

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             + LE    +   AL  G E  GL  +    A +   + M G  ++LN+S +AA+ L
Sbjct: 114 DSQLLEDFDISTPAALFFGTEKDGLSEEVMREADATVKIPMVGFTESLNISVSAAIIL 171


>gi|260174886|ref|ZP_05761298.1| putative tRNA/rRNA methyltransferase [Bacteroides sp. D2]
 gi|315923129|ref|ZP_07919369.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697004|gb|EFS33839.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 254

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 18/247 (7%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALA-RLDWDANLPHPFPVKTVPP 98
           +   + E +FL  G   V   L +   +   L AT + L    D DA+      +  V  
Sbjct: 18  KKIRKEEGVFLAEGPKLVGDLLGHFPCRF--LAATSSWLQEHPDIDAS-----ELVEVSQ 70

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + + +    +   Q LA+   P  +   + V  S L + LD V DP N+G I+R A  F 
Sbjct: 71  EDLSRASLLKTPQQVLAIFEQPSYTVNPEVVHQS-LCLALDDVQDPGNLGTIIRLADWFG 129

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            + II ++      +    ++  G +  +     ++L D ++ +        G   D K 
Sbjct: 130 IEHIICSQNTVDVYNPKTIQATMGGIARVKVHY-TSLPDFIRSLGDT--PIFGTFLDGKN 186

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALY 274
             EQ +  + + +++G EG G+  +         ++          ++LNV+ A AV   
Sbjct: 187 MYEQPLSANGL-IVMGNEGNGIGKEVATLINRKLYIPNYPEGQETSESLNVAIATAVICA 245

Query: 275 ITQNHFA 281
             +   A
Sbjct: 246 EFRRQAA 252


>gi|237713266|ref|ZP_04543747.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406593|ref|ZP_06083142.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647301|ref|ZP_06724896.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294809639|ref|ZP_06768330.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446733|gb|EEO52524.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355296|gb|EEZ04387.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637377|gb|EFF55800.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CC 2a]
 gi|294443158|gb|EFG11934.1| RNA methyltransferase, TrmH family [Bacteroides xylanisolvens SD CC
           1b]
          Length = 254

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 16/246 (6%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
           +   + E +FL  G   V   L +   +   L AT +                +  V  +
Sbjct: 18  KKIRKEERVFLAEGPKLVGDLLGHFPCRF--LAATPSWFQEHPGIDASE----LVEVSQE 71

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    +   Q LA+   P  +   +AVR S L + LD V DP N+G I+R A  F  
Sbjct: 72  DLSRASLLKTPQQVLAIFEQPQYTLAPEAVR-SSLCLALDDVQDPGNLGTIIRLADWFGI 130

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + II ++      +    ++  G +  +     ++L D ++ +        G   D K  
Sbjct: 131 EHIICSQNTVDVYNPKTIQATMGGIARVKVHY-TSLPDFIRSLGDT--PVFGTFLDGKNM 187

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYI 275
            EQ +  + + +++G EG G+  +         ++          ++LNV+ A AV    
Sbjct: 188 YEQPLTANGL-IVMGNEGNGIGKEVATLINRKLYIPNYPAGQETSESLNVAIATAVICAE 246

Query: 276 TQNHFA 281
            +   A
Sbjct: 247 FRRQAA 252


>gi|42522737|ref|NP_968117.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
 gi|39573933|emb|CAE79110.1| putative RNA methylase [Bdellovibrio bacteriovorus HD100]
          Length = 238

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+RN    +VL+ + D  NI A++RSA           +  +  +     +   GA + +
Sbjct: 42  ALRNFDTAVVLEGIYDRGNISAVMRSAEGLGFGNFHVIE--TQEKFKEANRVTQGADKWV 99

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +     D ++ + + G++      D+  KPL +   + K AL+LG E  G+ P+   
Sbjct: 100 EVKKWKKTADCVKALKNQGYKIYVTHLDANAKPLHEIDFSGKTALVLGNERDGVTPEMIA 159

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
            A     + M G +++ N+S A A+ LY I+Q+   +
Sbjct: 160 AADQTIIIPMTGFVQSFNISVAGALGLYHISQDRLKR 196


>gi|282858919|ref|ZP_06268059.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
 gi|282588301|gb|EFB93466.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
          Length = 181

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L T  +   +++  + +    L++VLD V   +N+G++ RS  AF    +      +   
Sbjct: 4   LRTIEMNRLSIEEFKEANKLPLVVVLDDVRSLYNVGSVFRSGDAFRITAVYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPL----EQEIKND 227
           +  + K+A G  + + +    +  DA++ +HS G+    +   +    L           
Sbjct: 64  NTEIHKTALGGEDSVDWKYFEHTEDAIKALHSQGYYVYCVEQVEGSTKLQNLQSTLDTTQ 123

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A+I+G E KG++    + + +   +   G   +LNVS  A + ++     FAK
Sbjct: 124 HYAIIMGNEVKGVKQSVVDLSDNCLEIPQFGTKHSLNVSTTAGIVIWE----FAK 174


>gi|189913162|ref|YP_001965050.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|189913499|ref|YP_001964727.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167777838|gb|ABZ96137.1| tRNA (guanosine-2'-O-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167781567|gb|ABZ99863.1| Putative rRNA methylase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 261

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 16/228 (7%)

Query: 56  TVSAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG 113
            V   L+N   ++  +  T+      +   D+ L              ++ +G   VHQG
Sbjct: 36  AVRLLLSN--FEVVSVFCTEKYWQKHKNLIDSKLKDEEKCYVADQSIFEETIGFH-VHQG 92

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
                    +   D    +  +++++ + D  NIG+ILR+A AF    I+   + +    
Sbjct: 93  FMAVGKQKWAKEEDL---TFPILIINAIVDSENIGSILRNAAAFGIKSILFDSKSASPYL 149

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--------SDSKKPLEQEIK 225
               + + GA+  +   + +NL D++Q++       + L+            K +++  K
Sbjct: 150 RRSVRVSMGAIFQLQLAKTTNLPDSIQRLKERPTNLVALALPKENSHHLSKTKTIQEIGK 209

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + + LI+G E  G+     + +  + ++ M   I +LNVS+A AVAL
Sbjct: 210 LENLVLIVGNEANGIEEGVLDASDVIGYIPMQNNIDSLNVSHALAVAL 257


>gi|255532027|ref|YP_003092399.1| tRNA/rRNA methyltransferase SpoU [Pedobacter heparinus DSM 2366]
 gi|255345011|gb|ACU04337.1| tRNA/rRNA methyltransferase (SpoU) [Pedobacter heparinus DSM 2366]
          Length = 176

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 6/162 (3%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                     L++VLD+V   HNIG++ R+A  F+ + +      +      + K+A GA
Sbjct: 15  EEFKEQEKLPLIVVLDNVRSMHNIGSVFRTADGFAIEKLYLCGITARPPHREIEKTALGA 74

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGL 240
            + + +       DA+  + + G+  IG+   +   +    +   + K ALI G E  G+
Sbjct: 75  TQSVAWAHFETTVDAIASLKADGYHIIGIEQAAGSTMLNTYKPTYSKKYALIFGNEVNGV 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +          +   G   + N+  +A + L+   + FAK
Sbjct: 135 SDEVMAQIDECIEIPQFGTKHSFNIVISAGIVLW---DFFAK 173


>gi|271966808|ref|YP_003341004.1| tRNA/rRNA methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270509983|gb|ACZ88261.1| putative tRNA/rRNA methyltransferase [Streptosporangium roseum DSM
           43021]
          Length = 186

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 1/150 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +L ++++ V  P NIG+I R+A AF  + I      +P  +    K+A G    + + 
Sbjct: 26  EGRLALIVESVTGPFNIGSIFRTAAAFGVERIWLAGNATPPTNPKAQKTALGTDRLVAWE 85

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                 +A++   + GF  + +       PL        + L++G+E  G  P   E A 
Sbjct: 86  EPVPAVEAVRAAKADGFTVVAVELTGDAAPLHAAELGGDVCLVVGSEDHGCSPALLEAAD 145

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            + ++   G + + NV+ A A+AL   +  
Sbjct: 146 GVCYIPQVGRVGSFNVAVATAIALAEARRR 175


>gi|224373768|ref|YP_002608140.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
 gi|223589277|gb|ACM93013.1| tRNA guanosine-2'-O-methyltransferase [Nautilia profundicola AmH]
          Length = 209

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L + +D+V   HN+ AI+R+  A +   +    +     +  +     GA + I +
Sbjct: 19  RQNTLRVFMDYVFSSHNLSAIVRTCDAVNVGKLYYRHQRKVRLNNDI---TMGAHKWIFH 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             + ++ +  + +   G+Q +    D +     +        ++LG E  G    + + A
Sbjct: 76  EYVEDIEEFYKNIKKEGYQVVVTLLDEETVDFREVDYTKPTLIVLGNEVDGASDISIKYA 135

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M G+ ++LNVS A AV LY  Q   A
Sbjct: 136 DKKVIIPMYGMSQSLNVSVANAVILYEAQRQRA 168


>gi|327402832|ref|YP_004343670.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327318340|gb|AEA42832.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 177

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 7/169 (4%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   +   T        L+++L+ +   +NIG+  R+A AF+ + +      +      +
Sbjct: 9   ELDRVDEQTFKTQEKFPLIIILNDIRSLNNIGSFFRTADAFNIEKVYLCGITAQPPHREI 68

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALIL 233
            K+A GA E I +    ++   + ++   G     +    +  L  E   +K+ + AL+ 
Sbjct: 69  HKTALGATETIDWEYRQDINALVAELKEEGIAVCSIEQAEETVLLHEISTLKDQRFALVF 128

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E  G+     +++  +  +   G   +LNVS  A + L+     FAK
Sbjct: 129 GNEVDGVDQSVIDSSNYIIEIPQFGTKHSLNVSVCAGIVLWE----FAK 173


>gi|256371686|ref|YP_003109510.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008270|gb|ACU53837.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 316

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 104/281 (37%), Gaps = 44/281 (15%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLD 82
             +RD K         R      ++ + G   V+  L      +  +L   +  ALA   
Sbjct: 29  EPYRDLKGGNGL----RQRRGARDVIVEGRVAVTTLL-GTGLTVHSVLLDDHQVALATEV 83

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPL--LSPTLDAVRNSQLLMVL 138
            D  +    P+     + I + VG  A+H+G+    E  P+  L   LD     +  +V 
Sbjct: 84  VDRAVARRVPILVASRRVIAETVGF-ALHRGVVAHAERPPVQALEDFLDLWAPGETALVA 142

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + V D  N+GA+ R+A AF    ++     +   +    + ++G L  +P +R +    A
Sbjct: 143 EGVVDQENLGALGRNAAAFGACALVLDPTSADPRNRRSVRVSAGHLLTLPLVRATPWPSA 202

Query: 199 LQKMHSWGFQTIGLSS--------------------------------DSKKPLEQEIKN 226
           L  +     +   L                                   ++ P E ++  
Sbjct: 203 LALLARSQVRIAALVPPASTQRLRTERTCDLTPVVTVDELAEAIGEPRHARAPGEHDLPR 262

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            ++AL++G+EG GL P     A  +  + +   + ++N++ 
Sbjct: 263 PRVALLVGSEGHGLSPSALAYADVLVTIPIANGVDSVNLAT 303


>gi|255994890|ref|ZP_05428025.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
           49989]
 gi|255993603|gb|EEU03692.1| SpoU rRNA Methylase family protein [Eubacterium saphenum ATCC
           49989]
          Length = 280

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 11/219 (5%)

Query: 68  IFQLLATKNALARLDWDANLPHPFP-------VKTVPPQTIDKIVG-KEAVHQGLALETA 119
           +  ++     L +      L            VK    Q + K+   K A H    L+ +
Sbjct: 56  VDAVIVEDGYLEKYLSQTRLAGQLKKLIAAGLVKCFSSQVMGKLSDDKSAQHIAAVLKKS 115

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             +    +    S+ ++ L  + DP N+GAI+R+A A    G++ +       S  + ++
Sbjct: 116 FFVQAAANKFDLSENILGLCEIQDPRNLGAIMRTAAATG-TGLLLSNDSCDVFSDKVIRT 174

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           ++G  + + +++ ++  D L ++     +    + +               +++G EG+G
Sbjct: 175 SAGLFDRVGFVQATSREDFLNRLKDR--RVFAAALNEGMIYTNLNGMKNTCILMGNEGRG 232

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L       AT    + M   + +LNV  AA++ ++    
Sbjct: 233 LYEDDFNIATDKVFIPMENDVDSLNVGVAASLFMFELNR 271


>gi|260223702|emb|CAX28485.1| tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus Phlomobacter
           fragariae]
          Length = 218

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 5/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+R+  L + L++++ P NI AI+R+A       I     +S + S  L+ +A+G+   +
Sbjct: 14  AMRHPDLTVCLENLHKPRNISAIIRTADEVEIPQIHA--IWSKNSSKNLSTAAAGSNHWV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                + + + +    + G Q +     +      +        +ILG E  G+  +   
Sbjct: 72  RVKNHATIENTISTCKAAGMQILVTHLTNQAIDFLEIDYTQPNCIILGQEQTGISKQALA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 132 LADHN--IPMMGMVQSLNVSVASALILYEAQRQR 163


>gi|220919411|ref|YP_002494715.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957265|gb|ACL67649.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 225

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 5/162 (3%)

Query: 116 LETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
               P     +DAV   R   L +V++   DP N+ A+LR+  AF    +   +      
Sbjct: 7   AFVLPERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGVQTLHAIEGPMKPY 66

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIAL 231
                K +  A + +   R S+  + L  + S GF        +   P+       K+AL
Sbjct: 67  DRN-KKISQNADKWLDVRRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGKVAL 125

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + G E +G+  +    A +   + M G +++LNVS AAA++L
Sbjct: 126 VFGNEQRGVSEEALALADACYAIPMRGFVQSLNVSVAAAISL 167


>gi|284034068|ref|YP_003383999.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283813361|gb|ADB35200.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 279

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 13/246 (5%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           ++   +  ++  Q+         +     + GV  +S A+ +    +  L+         
Sbjct: 4   RVSSRNARFQVWQALLSNRNKRQRAGEFLVQGVRPISLAVEHGW-TVNTLIHDAERPLSQ 62

Query: 82  DWDANLPHPFPVKTV--PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMV 137
                L +    + V   P  + ++  K+       L    +    L+ +      L +V
Sbjct: 63  WARDLLQNQQSTERVLMAPGLLAELTEKDEAE---ILAVVAMPPDDLERIEAGPDFLGVV 119

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            D    P NIG+I+RSA AF  DG+I T   +        ++++G+L  +P +R+ +  +
Sbjct: 120 FDRPTGPGNIGSIIRSADAFGADGLIVTGHAADVYDPKAVRASTGSLFALPAVRVPSQRE 179

Query: 198 ALQKM---HSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            ++ +    + G     +G        +          L++G E  GL    +E A  + 
Sbjct: 180 VMEWVAARRAAGVPIVVVGTDEHGAVDVYDFDFTQPTLLLVGNETTGLSAAWKELADELV 239

Query: 253 HLHMPG 258
            + M G
Sbjct: 240 RIPMTG 245


>gi|221134069|ref|ZP_03560374.1| tRNA guanosine-2'-O-methyltransferase [Glaciecola sp. HTCC2999]
          Length = 235

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187
           R + L ++++ V+ PHN+ A++R+  A       ++  + YS     +   ++ GA   +
Sbjct: 16  RQTDLTVLMEEVHKPHNVAALIRTCDAVGIHEAHVVWNQNYS-----LRVGTSLGAHHWV 70

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S++  A+  +   G Q +  + SD      +       A+ILG E  G       
Sbjct: 71  GMHEHSDIEKAIAHLKGQGMQVLVTNLSDDAVDFREVDYTLPTAIILGQEKFGATKNAIA 130

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            A     + M G+  +LNVS AAAV LY  Q   
Sbjct: 131 LADKEIVVPMVGMTVSLNVSVAAAVILYEAQRQR 164


>gi|282859569|ref|ZP_06268674.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
 gi|282587797|gb|EFB92997.1| RNA methyltransferase, TrmH family [Prevotella bivia JCVIHMP010]
          Length = 252

 Score =  141 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 90/246 (36%), Gaps = 32/246 (13%)

Query: 40  SRHTSQPENLFL-YGVHTVSAALNNP--SRKIFQLLATKNALARLDWDANLPHPFPVKTV 96
           ++   +  NLF+  G   V+  L     + +IF+ +     +  L    ++   F +K V
Sbjct: 29  TKKGREKANLFIAEGPKVVNDLLQAGFEAEEIFEDIEDIKKITFLQHPQSMLGVFKLKQV 88

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           P                       L         + +L + LD V DP N+G I+R A  
Sbjct: 89  PN----------------------LQEDVFTFFPSQKLSLALDGVQDPGNLGTIIRIADW 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + I  +       +  + ++  G++  +     ++L + +  +    +       D 
Sbjct: 127 FGIENIYCSPNTVDCWNPKVVQATMGSIARVNIHY-TSLLEFVDSLP-LNYPIYATLLDG 184

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVA 272
              + Q+   +   +++G EG G+  + ++      ++          ++LNV+ A A+ 
Sbjct: 185 -NNIYQQDLTEYGVIVMGNEGNGISTELRQKINHKLYIPNYPADRSSAESLNVAIATAIV 243

Query: 273 LYITQN 278
               + 
Sbjct: 244 CAEFRR 249


>gi|304383767|ref|ZP_07366226.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
 gi|304335291|gb|EFM01562.1| SpoU family RNA methylase [Prevotella marshii DSM 16973]
          Length = 181

 Score =  141 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 3/170 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L            L++VLD V   +N+G++ RS  AF    I      +    A 
Sbjct: 8   IEMHRLTVEEFKEAEKLPLVVVLDDVRSLYNVGSVFRSCDAFRISAIYLCGITACPPHAE 67

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK--NDKIALI 232
           + K+A GA E I +   +   +A++ + + GF    +  ++    L         K A++
Sbjct: 68  IHKTALGAEESIAWRYFATAEEAVRNLQTKGFFVYSIEQAEGSTKLHHLTLERRQKYAVV 127

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LG E KG+     + +     +   G   +LNVS AA + ++       +
Sbjct: 128 LGNEVKGVHQSVVDLSDGCLEIPQWGTKHSLNVSVAAGMVVWEFAKQLLQ 177


>gi|281421671|ref|ZP_06252670.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
 gi|281404305|gb|EFB34985.1| RNA methylase, SpoU family [Prevotella copri DSM 18205]
          Length = 179

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 13/176 (7%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L T  +   TL+  + +    L++VLD V   +N+G++ RS  AF  + +      +   
Sbjct: 4   LRTIEMNRLTLEEFKGAEKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI------KN 226
           +  + K+A G  + + +       +A++K+   G+    +         Q +       +
Sbjct: 64  NVEIHKTALGGEDSVDWEYFKTTEEAVEKLKQKGYFVYSIEQVEGSTKLQNLPEAHPSLS 123

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              A+I G E KG++    + +     +   G   +LNVS  A + ++     FAK
Sbjct: 124 KGYAVIFGNEVKGVKQNIVDMSDGCLEIPQFGTKHSLNVSVTAGIVVWE----FAK 175


>gi|160900365|ref|YP_001565947.1| tRNA/rRNA methyltransferase SpoU [Delftia acidovorans SPH-1]
 gi|160365949|gb|ABX37562.1| tRNA/rRNA methyltransferase (SpoU) [Delftia acidovorans SPH-1]
          Length = 263

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 106/265 (40%), Gaps = 14/265 (5%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           S + +      R++   K ++   Q S    +   ++L G H   AAL    +    ++A
Sbjct: 2   SRQPAATLIQSRDNVLVKDLRRLVQDSGAYRKQGRVWLEGDHLCRAALARGMQPSVAVVA 61

Query: 74  TK-NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRN 131
                L  L+W            +      ++ G E+  + G  ++           +R 
Sbjct: 62  ESFWPLVPLEWVQGAGKCV---VLADALFAEVSGLESPARIGFLMD-----WQASAVIRA 113

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VLD V D  N+G+ILRSA AF    ++  K  +   S  + ++  GA   +  + 
Sbjct: 114 GVATVVLDRVQDAGNVGSILRSAAAFGFSQVVALKGTAALWSQKVLRAGMGAHFGLQLVE 173

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            ++  D    + + G   I  SS   + +         A  +G EG+G+     + A   
Sbjct: 174 SASSED----LDALGLPLIVTSSHQGELIHNAALPWPCAWAMGHEGQGVGEALMQRAAQH 229

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
             +  PG  ++LNV+ AAA+ L+ +
Sbjct: 230 VRIGQPGGEESLNVAAAAAICLHAS 254


>gi|113460445|ref|YP_718507.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|112822488|gb|ABI24577.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
          Length = 364

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 99/242 (40%), Gaps = 17/242 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVKTVPPQT 100
             ++ E + +YG +   +        I ++  T     ++ D  + L     V  V   +
Sbjct: 121 KKNRAEEMKVYGENACLSLFAQRPESIVRVWTTVEMAHKVGDLFSYLASNKKVYHVVDNS 180

Query: 101 IDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
              +V     H G+ +         L   LD       L+VL+ V + HNIG I+R+ V 
Sbjct: 181 ELALVSGTEHHGGICMLVKKRRPFTLHGYLDIPHQKNCLLVLNGVRNAHNIGGIIRTCVC 240

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           +    ++         SAV  + A G +E+I  + I     AL K+   G+Q + LSS+ 
Sbjct: 241 YGISAVVI-DDVELLHSAVAMRVAEGGMEYIHPLEIDRTETALVKLRQAGYQIVHLSSNK 299

Query: 217 -KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAV 271
             K ++Q   NDK+A +L +E         + A  + +L     +      LNVS A  +
Sbjct: 300 HAKTIKQLQLNDKVAFVL-SEAD--TESLADKADELINLSLVNPLKHG---LNVSVATGI 353

Query: 272 AL 273
            L
Sbjct: 354 LL 355


>gi|327405561|ref|YP_004346399.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327321069|gb|AEA45561.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 225

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E    +   + ++R   L ++L+ +   HN  A++RS   F    +   +  S ++  V 
Sbjct: 15  EVKGQMFDEVASMRTRHLTVLLEEIFQEHNASAVIRSCDCFGIQELHVVE--SKNKYKVQ 72

Query: 177 AKSASGALEHIPYIRISN----LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
              A GA   +     +     L DA+ K+ S G++   L+ D++  +     +  +AL 
Sbjct: 73  RDIARGAGRWVDLFNYNEGPTPLLDAVNKLKSKGYKIAALTPDAEHSIFDLPLDQPVALS 132

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G E +G+  + +E A     + M G  ++ NVS + A+ L   +   
Sbjct: 133 FGTEWEGISDEIREIADYKVSIPMVGFTESFNVSVSVALTLQALRQRL 180


>gi|241668442|ref|ZP_04756020.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876975|ref|ZP_05249685.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842996|gb|EET21410.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 252

 Score =  141 bits (357), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 93/260 (35%), Gaps = 29/260 (11%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL-NNPSRKIFQLLATKNALARLDWDAN 86
           ++ KK+ S   + +         + G+     AL   P   +  LL T+N         N
Sbjct: 10  KEIKKLHSPQGRKKSI----YYVIEGLRCCDEALSRLPKEDLIALLTTENTD-------N 58

Query: 87  LPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           + +P      +  + ++++   +   QG+ +      + + D       ++VLD + DP 
Sbjct: 59  ISYPVDKKYILSEKDLNELTQTQ-NSQGVLILAKKKDTSS-DFEFKDDFILVLDRIQDPG 116

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK--MH 203
           NIG ILR+A+A     I+         +    ++  GA   + +    NL+       + 
Sbjct: 117 NIGTILRTAIAVGLTEIVLINGTVDPFNPKAIRAGMGAQFSLKFRYFENLSAVRNYPTLK 176

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA----HLHMPGI 259
                 +    +      +E K     L+ G E  G+                 +     
Sbjct: 177 ERKIW-LTTPHEGVSCYSKEFKLSNSVLVFGEEANGIE-------DFSVGEKTMIPTLSN 228

Query: 260 IKALNVSNAAAVALYITQNH 279
           I++LNV+ AA + L+     
Sbjct: 229 IESLNVAQAATIYLFEGLRQ 248


>gi|163755356|ref|ZP_02162476.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
 gi|161324776|gb|EDP96105.1| tRNA/rRNA methyltransferase (SpoU) [Kordia algicida OT-1]
          Length = 218

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 3/160 (1%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G   E    L   + + R     + ++ V   HN  A+LRS   F    +   +      
Sbjct: 11  GYLTERRKELFIKVLSKRTRHFTVAVEDVYQMHNTSAVLRSCDVFGIQDVHVIEAR--LG 68

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIAL 231
             +  + A GA + +   R ++    +  +   G++ I  +     + L       K A 
Sbjct: 69  KKMDREIAMGAQKWVDIHRYNDTQQCIDTLKKQGYRIIATTPHEDSQYLHDFDITQKAAF 128

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
             G E +GL  +    A     + M G  ++LN+S +AA+
Sbjct: 129 FFGKEKEGLSEEVLSQADEFLKIPMVGFTESLNISVSAAI 168


>gi|256420945|ref|YP_003121598.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
 gi|256035853|gb|ACU59397.1| tRNA/rRNA methyltransferase (SpoU) [Chitinophaga pinensis DSM 2588]
          Length = 175

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 74/158 (46%), Gaps = 6/158 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A   + L+++LD+V   HN+G++ R+A  F   G++            + K+A GA E +
Sbjct: 14  AADKTPLVLILDNVRSMHNVGSVFRTADGFLLQGVVLCGYTPVPPHRDIQKTALGATETV 73

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGLRPKT 244
            +   +  T+A+  +   G+  + +  + +   L+Q I   +  +ALI G E  G+  + 
Sbjct: 74  EWQYFATTTEAVAALQEAGYTVMAVEQAVNSIMLDQFIPASDKPLALIFGNEVSGVDAEV 133

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +       +   G+  +LN+S +  + ++     FAK
Sbjct: 134 MKMVEGCIEIPQSGMKHSLNISVSTGIVVWDI---FAK 168


>gi|31544702|ref|NP_853280.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541548|gb|AAP56848.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930766|gb|ADC30705.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           R(high)]
 gi|284931329|gb|ADC31267.1| SpoU rRNA methylase family protein [Mycoplasma gallisepticum str.
           F]
          Length = 279

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 4/160 (2%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L  PT D + +    + LDH+ DP N+G ILR+A AF    ++     +   +  L +
Sbjct: 110 KDLNHPTFD-LSDQHNYLFLDHIQDPSNLGTILRNAAAFDLTKVLIHDSVN-LYNPKLIR 167

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEG 237
           +++GA+       I NL   L  +   G + +  ++     PL+Q        +I G E 
Sbjct: 168 ASAGAIFSNQISLIKNLDQFLNAIKKKGLRLVATANHEDATPLDQFDHQLGNIIIFGNEA 227

Query: 238 KGLRPKTQETATSMAHLHMPGI-IKALNVSNAAAVALYIT 276
            G+  +    A     + +     ++LNV+ ++ + LY  
Sbjct: 228 NGVSEQLLNQADQTIKIVINNQYAESLNVATSSGIILYEL 267


>gi|328947262|ref|YP_004364599.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328447586|gb|AEB13302.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 255

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/259 (21%), Positives = 103/259 (39%), Gaps = 27/259 (10%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA------LARLDWDANLPHPFPVKT 95
             +Q   L + G   V       S+KI +L   +        L +    +  P+    K 
Sbjct: 2   KNTQRNELAVCGFAAVKTLEKINSQKIRRLYFMEEKAPLFGGLCKKMAASKRPYN---KV 58

Query: 96  VPPQTIDKIVGKEAVHQGLALET-APLLSP-----TLDAVRNSQLLMVLDHVNDPHNIGA 149
                ++K+ G    HQG+      P++ P     T   V   +  ++LD V + +N+GA
Sbjct: 59  ADSVELEKLCGS-VHHQGVVAMIDTPVILPLNTEITARWVEQKEDAVILDRVGNANNLGA 117

Query: 150 ILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           I+RSA  F    I+        S +    + A G +E +    + ++   L+ M      
Sbjct: 118 IVRSAAFFGIKNIVIPLDESQSSITTSSYRVAEGGMEFVNIYSVRSIPFLLKDMKGK-MA 176

Query: 209 TIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSMAHLHMPGI------ 259
             G S  ++K + +           ++LG E KG+  +  +   S+  +   G+      
Sbjct: 177 RFGTSLKAQKKVSEMKLLCQEKPALVVLGNEEKGISEEVAQNCDSLVIIPFAGMGEAGPK 236

Query: 260 IKALNVSNAAAVALYITQN 278
           + +LNV+ AA+V +Y  + 
Sbjct: 237 VDSLNVAQAASVIMYELKK 255


>gi|197124691|ref|YP_002136642.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196174540|gb|ACG75513.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 225

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 5/162 (3%)

Query: 116 LETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
               P     +DAV   R   L +V++   DP N+ A+LR+  AF    +   +      
Sbjct: 7   AFVLPERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGVQTLHAIEGPMKPY 66

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIAL 231
                K +  A + +   R S+ T+ L  + + GF        +  +P+       K+AL
Sbjct: 67  DRN-KKISQNADKWLDVRRWSSTTECLAHLRAEGFAVYATHLGERSRPMAGLSFAGKVAL 125

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + G E +G+  +    A +   + M G +++LNVS AAA++L
Sbjct: 126 VFGNEQRGVSEEALALADACYAIPMRGFVQSLNVSVAAAISL 167


>gi|315608080|ref|ZP_07883073.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
 gi|315250549|gb|EFU30545.1| TrmH family RNA methyltransferase [Prevotella buccae ATCC 33574]
          Length = 276

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 92/254 (36%), Gaps = 22/254 (8%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++          G   V   L      +  L AT+    +    ++         V  +
Sbjct: 22  KKNRKAEGKFVAEGPKIVGELLAVGQASL--LAATREWFEKNSPISSSTEK---YEVTEE 76

Query: 100 TIDKIVGKEAVHQGLALETAP----------LLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
            + KI   +     + +   P            + T  A  +S L++ LD V DP N+G 
Sbjct: 77  ELRKISFLQHPQMVIGVFDIPNKHSTPPSITQEAYTASAAWDSSLILALDGVQDPGNLGT 136

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F    I+ ++  + + +    ++  G++     +  ++L+  L+ + +     
Sbjct: 137 IIRIADWFGITDIVCSEDTADAYNPKTVQATMGSIARTKIVY-TDLSAYLESLPNET-PV 194

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNV 265
            G   D     EQ + +  + +I+G EGKG+  +          +          ++LNV
Sbjct: 195 YGTMLDGTDIYEQSLTHHGV-IIMGNEGKGISKEITRHINHRLFIPGYPKDRPSAESLNV 253

Query: 266 SNAAAVALYITQNH 279
           + A A+     +  
Sbjct: 254 AIATAITCAEFRRR 267


>gi|78189054|ref|YP_379392.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
 gi|78171253|gb|ABB28349.1| SpoU rRNA methylase family protein [Chlorobium chlorochromatii
           CaD3]
          Length = 184

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 2/164 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E A LL     A     ++++L ++    N+G++ R+A +   + II +   +      +
Sbjct: 17  EMARLLPEEYAASPCHPIVLMLHNIRSMWNVGSMFRTADSAGIERIILSGYTATPPRKEI 76

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILG 234
           +K+A GA E +P+    +    ++K+ + G +   L  +  S+      + +  I L++G
Sbjct: 77  SKTALGADESVPWSYTEDAYKTVRKLQAEGVKVCALEIAEGSRAHSSICMADFPICLLVG 136

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E  GL  +  +   ++  +   G   +LNV+ AA VAL+    
Sbjct: 137 NEVDGLDDELLQACDAVLEIAQYGTKHSLNVAVAAGVALFELVR 180


>gi|156093651|ref|XP_001612864.1| rRNA methylase [Plasmodium vivax SaI-1]
 gi|148801738|gb|EDL43137.1| rRNA methylase, putative [Plasmodium vivax]
          Length = 314

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 113/291 (38%), Gaps = 53/291 (18%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLA---------TKNALARLDWDANLPHPFPV 93
            ++ +  ++YG+++VS+ L    R I  +L          T+    R  +D       P+
Sbjct: 25  QAEHDLDYVYGINSVSSVLVKNERTIHSVLVNQHIRLNKKTRKQAYRYIFDTLKERGIPI 84

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAP--------LLSPTLDAVRNSQLLMVLDHVNDPH 145
           +T   + +D +VG    H  + ++T+          L       +   + + L  V D  
Sbjct: 85  RTTSKRKMDDLVG-GFPHNDIIMQTSYRTMKRAKHFLKDYPQKGKQKSIYICLHDVYDNM 143

Query: 146 NIGAILRSAVAFSCDGIITTKRYSP----------SESAVLAKSASGALEHIPYIRISNL 195
           NIG I RS   F  D I   K+                  +  S+ G  E + +  ++++
Sbjct: 144 NIGNICRSIFFFGGDSIFLKKKKKKKKLQEKLLQMKIDTPVLHSSVGTSEFLDFFHVNDM 203

Query: 196 TDALQKMHSWGFQTIGL----SSDSKKPLEQEI------KNDKIALILGAEGKGLRPKTQ 245
              +  + S GF+ +       + S     QE+      KN+K  +ILG E KGL  +  
Sbjct: 204 LSFMDDLKSCGFKILSTCCRLDNSSTNDRLQELANVRLSKNEKAFIILGNETKGLSKEIL 263

Query: 246 ETATSMAHLHMPG---------------IIKALNVSNAAAVALYITQNHFA 281
           + + +  ++                    + +LNV+NA A+ L+   +H A
Sbjct: 264 DRSDACIYISGHHTEEASTPALNSNGNFTLDSLNVNNACAILLHHFASHLA 314


>gi|325279820|ref|YP_004252362.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
 gi|324311629|gb|ADY32182.1| tRNA/rRNA methyltransferase (SpoU) [Odoribacter splanchnicus DSM
           20712]
          Length = 184

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   + +A + +    ++++LDHV   +N+G++ R++ AF  + I      S  E
Sbjct: 7   LQNEELNRISTEAFKKAPKLPVVILLDHVRSQNNVGSVFRTSDAFRIEKIFLCGITSTPE 66

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKI 229
           +  + K+A GA + + +  + + T+A+ ++   G++   +  +++   LE    +   K 
Sbjct: 67  NREVHKTALGAEDAVDWEYVKDTTEAVDRLKKEGYRIFAIEQAENTTSLENFSLSPGQKY 126

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ALI G E KG++ +  + +     +   G   + N+S    + L+
Sbjct: 127 ALIFGNEVKGVQQEVIDLSDGCIEIPQFGTKHSFNISVTVGIVLW 171


>gi|125600959|gb|EAZ40535.1| hypothetical protein OsJ_24991 [Oryza sativa Japonica Group]
          Length = 263

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  + +V++ ++D  N+ A  RSA A     +      +          + GA + +  
Sbjct: 63  RSYSVCLVVEGLSDFGNVSAAFRSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDI 122

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
              S+  +    +   G++       +    +     +   A+++G E  G+     + +
Sbjct: 123 ELWSSTAECFDALKKRGYRIATTYLGNDSVCVYDMDWSQPTAIVVGNELMGISDDALKLS 182

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 183 DLHCSVPMKGMVDSFNVSVAAGILMHHA 210


>gi|291456412|ref|ZP_06595802.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Bifidobacterium breve DSM 20213]
 gi|291381689|gb|EFE89207.1| RNA 2'-O ribose methyltransferase substrate binding family protein
           [Bifidobacterium breve DSM 20213]
          Length = 292

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 89/262 (33%), Gaps = 32/262 (12%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-----------KNALARLDWDANL 87
           +++   +     + G  +V  A+      +  L               + L R+  +A+ 
Sbjct: 24  RAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVAQALDHPRIVSSTLERI-VEASQ 82

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLAL------ETAPLLSPTLDAVRNSQLLMVLDHV 141
                V       I +I       QG+          + +    LD    +  +     V
Sbjct: 83  DATIYVHQCTGDVIRRISADA---QGILAVGNAQAMQSDVDDLALDTADYAPRIAAFWQV 139

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N G ++R+A A  CD +I         +  + +S +G+L H+P   +    +    
Sbjct: 140 RDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVFTMR-TNEFFDW 198

Query: 202 MHSWGFQTIGLSSDSK-----KPLEQEIKNDKI-----ALILGAEGKGLRPKTQETATSM 251
                                + L   + +        A++ G E +GL P+  E    +
Sbjct: 199 TSDHHVDVWAADVYGTEKRKPESLPAVLADKAAVSMSQAVLFGNEARGLEPEILERCGRI 258

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
             + + G  ++LN+  +AAV L
Sbjct: 259 VSIPLYGKAESLNLGTSAAVML 280


>gi|315186915|gb|EFU20673.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 249

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 4/155 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + +VL+++  PHN  A+LRSA A     +   +  +   +      + G    +  
Sbjct: 35  RTRYITVVLENIYHPHNANAVLRSAEAMGLQDVHIVED-AVPFTPSKG-VSMGTARWLSL 92

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN-DKIALILGAEGKGLRPKTQET 247
            R  +   A+ ++   G++ I  +   +  P+++      K A   G E  GL     E 
Sbjct: 93  HRYQDPRVAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFFGGELPGLSDAVLEA 152

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G +++LN+S  A + L+       K
Sbjct: 153 ADEYLTIPMYGFVESLNISVTAGIVLHNVVQRLRK 187


>gi|218531683|ref|YP_002422499.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
 gi|218523986|gb|ACK84571.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
          Length = 269

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 88/264 (33%), Gaps = 11/264 (4%)

Query: 26  NHRDYKKMQSFNQ-KSRHT-SQPENLFLYGVHTVSAALNNPSR-KIFQLLATKNALARLD 82
           +  D  ++ ++   + R    +     + G  T+    +  +R     +L          
Sbjct: 8   DDPDDPRLSAYRAVRERDLVGRQGRFIVEGEVTLRLLFSGSARFAAESVLLAPERWPGFA 67

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAVRNSQLLMVL 138
            D       PV       +  + G   +H+G+         P     +       L++ L
Sbjct: 68  -DLLRGDGPPVYLAGKDVMSAVAGF-PIHRGVLAVGLRGAEPSPESLVPPAPAPALVVGL 125

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
             + +  N+G + R+A AF  D +               + ++GA   +P  R  +    
Sbjct: 126 VGLTNHDNVGGLFRNAAAFGADAVWLDAETCDPLYRKAIRVSAGAALTVPSARAPSGAAL 185

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           L          + L+    + L+      +  L+LG EG GL       A     + M  
Sbjct: 186 LDLAERHALTPLALTPSGSETLDALEPPARTLLLLGTEGPGLPESLMVRA-RRVRIAMAP 244

Query: 259 IIKALNVSNAAAVALYITQ-NHFA 281
              +LNV+ A A+AL+       A
Sbjct: 245 GFDSLNVATAGAIALHHLAGRRLA 268


>gi|326336522|ref|ZP_08202692.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691395|gb|EGD33364.1| SpoU family RNA methylase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 181

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 125 TLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++D  R +    +++VLD+V   +NIG++ R+A AF  + I      +      + K+A 
Sbjct: 16  SIDQYRQAEKIPVIIVLDNVRSLNNIGSVFRTADAFRIEKIYLCGITACPPHKDIHKTAL 75

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEI--KNDKIALILGAEGK 238
           GA E + +    ++   L+++H    +TI +   +  + L   +  K  K ALI G E +
Sbjct: 76  GATESVTWAYEKDILQLLKELHQSQVETIAIEQVEGAQSLSDFLPEKGKKYALIFGNEVE 135

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G++ +          +   G   +LN+S +A + ++       K
Sbjct: 136 GVQQEVVSLCGKAIEIPQYGTKHSLNISVSAGIVMWEIGQKIRK 179


>gi|300787904|ref|YP_003768195.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
 gi|299797418|gb|ADJ47793.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
          Length = 217

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 4/209 (1%)

Query: 69  FQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL 126
            +L  T  A A+     DA      PV  +  +  + +  +    QG+    A L  P  
Sbjct: 2   HELFVTARASAQHADLVDAARAAGVPVSPITDRAAEGL-SETVTPQGIVAVCALLDRPLE 60

Query: 127 DAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +AV   ++L++VL  V DP N G ++R A A   D ++         +    ++A+G+L 
Sbjct: 61  EAVTPAARLVVVLVDVADPGNAGTVIRVADAAGADAVVLAGDTVDPHNGKCVRAAAGSLF 120

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+P  R+ ++  AL    + G +T      +   L++       A + G E  GL     
Sbjct: 121 HLPIARVRDVPAALAACSAAGLRTFAAHGYADAELDRVDLAVPTAWVFGNEAHGLPADVL 180

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + A     + M G  ++LN++ AAAV +Y
Sbjct: 181 DRADLAVRIPMYGRAESLNLATAAAVCVY 209


>gi|242046186|ref|XP_002460964.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor]
 gi|241924341|gb|EER97485.1| hypothetical protein SORBIDRAFT_02g038320 [Sorghum bicolor]
          Length = 354

 Score =  140 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  + +V++ ++D  N+ A  RSA A     +      S          + GA + +  
Sbjct: 154 RSYAVCLVVEGLSDFGNVSAAFRSADALGVQSVHVISCDSSKRYRDNRHVSMGAEKWLDI 213

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
              ++  +    +   G++       +    +     +   A+++G E +G+     E +
Sbjct: 214 EIWNSPAECFSALKKRGYRIATTYLGTDSVCVYDMDWSQPTAIVVGNELRGISDDALELS 273

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 274 DLHCSVPMKGMVDSFNVSVAAGILMHHA 301


>gi|281425955|ref|ZP_06256868.1| RNA methylase, SpoU family [Prevotella oris F0302]
 gi|299142398|ref|ZP_07035530.1| RNA methylase, SpoU family [Prevotella oris C735]
 gi|281399848|gb|EFB30679.1| RNA methylase, SpoU family [Prevotella oris F0302]
 gi|298576120|gb|EFI47994.1| RNA methylase, SpoU family [Prevotella oris C735]
          Length = 179

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 72/169 (42%), Gaps = 6/169 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L            L++VLD V   +N+G++ RS  AF  + +      +   +A 
Sbjct: 7   IEMKRLSIDEFKEAEKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEAVYLCGITATPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKI----- 229
           + K+A G  + + +       +A++ +H  G+    +   +    L++   +  +     
Sbjct: 67  IHKTALGGEDSVAWKYFERTEEAVEALHHDGYFVYSIEQVEGSTMLQELTIDKPLTSKGY 126

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A+I+G E KG++ +  + +     +   G   +LNVS  A + ++    
Sbjct: 127 AVIMGNEVKGVKQQVIDMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFVR 175


>gi|89095094|ref|ZP_01168021.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
 gi|89080655|gb|EAR59900.1| rRNA methylase SpoU [Oceanospirillum sp. MED92]
          Length = 238

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R   L ++ D VN P N+ A++R+  A     I T     P E     + +A G+  ++ 
Sbjct: 16  RQPDLSLIADQVNKPRNLSALVRNCDAVGIHSIHT---VVPKEGYRTYRGTAKGSDYYVK 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++ +A+  +   G + +    SD      +       AL++GAE +G+     + 
Sbjct: 73  SRAHESVENAISVVRQQGMKVVAAHFSDKAIDYREFDFTQPCALLMGAEKQGVSDVAAQM 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + +   + M G++ +LNVS AA + L   Q+   K
Sbjct: 133 SDAHVVIPMMGMVSSLNVSTAAGIILVEAQHQRLK 167


>gi|294661208|ref|YP_003573084.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336359|gb|ACP20956.1| hypothetical protein Aasi_1647 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 258

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 91/235 (38%), Gaps = 9/235 (3%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++  Q     L G   V   L +    I  L+AT N L     +  L     +  V  +
Sbjct: 21  KKYRLQENKFILEGAKNVKLLLESDYE-INILVATSNFLHEY-TNLLLNRNIEIFQVNEK 78

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            +  +   +  +  LA+ T P  +P   A+   Q  +VLD+++DP N+G I+R A  +  
Sbjct: 79  ELSALGTFQENNAALAVATIPDNTPF--AIGEHQYGLVLDNISDPGNLGTIIRVADWYGI 136

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            GII +       +  +  ++ G+  +         TD    +       IG  +  K  
Sbjct: 137 AGIICSTNTVELYNPKVLHASMGSFVNTKVYY----TDLPTYLAQTNLPIIGTFTKGKNL 192

Query: 220 LE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            + Q +   +  +I+G E KG+             +   G  ++LN + A A+  
Sbjct: 193 HDPQTVWPSEGLIIIGNEAKGISETLLPYIHQKISIPKYGHAESLNAALATAIVC 247


>gi|260914536|ref|ZP_05921004.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260631327|gb|EEX49510.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 361

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 106/243 (43%), Gaps = 17/243 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
             ++ E + +YG +   A  +     I ++ AT     +     +    +      V   
Sbjct: 118 KKNRSEEMKVYGENACQALFSQRPESIVRIWATVEMAKKSGELFSYLAENKKAYHVVDNA 177

Query: 100 TIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            +  + G E  H G+ +   +  PL LS  LD  R    L+ +D V + HN+G ++R++ 
Sbjct: 178 ELTLVSGTE-HHGGICMLVKKARPLTLSGYLDIPRKQDCLVFIDGVQNAHNLGGVIRTSA 236

Query: 156 AFSCDGIITTKRYSPSES-AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
           AF   G+I  K ++ + + +  A+ A G +E+I  +      +ALQ++   G+Q + L+S
Sbjct: 237 AFGVKGVIVEKVFADNLNSSAAARVAEGGMEYIRVLETDYADNALQQLRKAGYQIVHLTS 296

Query: 215 DS-KKPLEQEIKNDKIALILGAE-GKGLRPKTQETATSMAHLHMPG--IIKALNVSNAAA 270
           +   KPL +     K+  ++  E GK       +       L +      + LN++ A  
Sbjct: 297 NKQAKPLAKLKFAQKVVFVV-NEQGK---TSLAQPEDEQVVLTLGNPLKAE-LNIAVATG 351

Query: 271 VAL 273
           + L
Sbjct: 352 ILL 354


>gi|319941637|ref|ZP_08015961.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804867|gb|EFW01721.1| hypothetical protein HMPREF9464_01180 [Sutterella wadsworthensis
           3_1_45B]
          Length = 274

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 97/264 (36%), Gaps = 15/264 (5%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLD 82
           +   K+ +    +++   +     L G+H +   L +P  KI  ++  +         L 
Sbjct: 14  NPRLKRWRRLALEAKAVRREGATVLEGIHLLQTVLEHPEVKINAVMLPEGRTTAEAKALA 73

Query: 83  WDANLPHPFPVKTVPPQTIDKIVG-KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
             A       +  +  +  D I   +  V  G+  E A   +P  +    +   + LD V
Sbjct: 74  ERAAQTLGTRLYVLSDRLYDAISPVENGV--GVMCEIALPAAPAPEKWAAAD-ALYLDGV 130

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            D  N+G ++R+A A     ++     +   +  + ++  GA   +      ++      
Sbjct: 131 QDAGNVGTLIRTAAAAGVRVVVAGPGTAGLWTPRVLRAGMGAHFAVDLAEGISIEKFRAD 190

Query: 202 MHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                 + +   +     L +         I  ++GAEG GL  K  E A     + +  
Sbjct: 191 YRG---RLLAADARGGVNLFEASDYTAAGPICWLMGAEGPGLSVKALELADERYWIPISR 247

Query: 259 IIKALNVSNAAAVALY-ITQNHFA 281
            +++LNV  AAAV L+   +   A
Sbjct: 248 SVESLNVGAAAAVCLFDAARRRLA 271


>gi|167763027|ref|ZP_02435154.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC
           43183]
 gi|167699367|gb|EDS15946.1| hypothetical protein BACSTE_01392 [Bacteroides stercoris ATCC
           43183]
          Length = 253

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 16/256 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++S   K ++    +     G   V   L     +   L+AT   L+     A    
Sbjct: 8   IKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATSEWLSAHRHLAVE-- 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V  V  + + +    +   Q LA+   P  S  +  + +  L + LD V DP N+G 
Sbjct: 63  --DVTEVSEEELSRASLLKTPQQVLAVFEQPDESVDVSVI-SRSLCLALDDVQDPGNLGT 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F  + I  +       +    ++  G +  +    I +L + +  +       
Sbjct: 120 IIRLADWFGIEHIFCSPNTVDVYNPKTVQATMGGIARVKLHYI-SLPELIASLED--IPV 176

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNV 265
            G   D +    Q +    + +++G EG G+  + +       ++          ++LNV
Sbjct: 177 YGTFLDGENMYTQPLSAYGL-IVMGNEGNGIGDEVKRLINRKLYIPNYPAERETSESLNV 235

Query: 266 SNAAAVALYITQNHFA 281
           + A AV     +   A
Sbjct: 236 AIATAVVCAEFRRQAA 251


>gi|305665198|ref|YP_003861485.1| putative SpoU rRNA methylase family protein [Maribacter sp.
           HTCC2170]
 gi|88709950|gb|EAR02182.1| putative SpoU rRNA methylase family protein [Maribacter sp.
           HTCC2170]
          Length = 176

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L   +      + +++VLD++   +NIG++ R+A AF  + I      +      + K+A
Sbjct: 12  LDVDSFKKTEKTPIILVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAIPPHKDIRKTA 71

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEG 237
            GA E + +    +  + ++++ +   +   +  +D+ + L + +  K  K AL+ G E 
Sbjct: 72  LGATESVSWEYRKDTLELIKELQADDCEIAAVEQADNSQMLNEFLIQKTSKYALVFGNEV 131

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           KG+  +    +  +  +   G   +LN+S +A + ++
Sbjct: 132 KGVSQEVVSASDVVLEIPQFGTKHSLNISVSAGIVIW 168


>gi|260592420|ref|ZP_05857878.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
 gi|260535656|gb|EEX18273.1| RNA methyltransferase, TrmH family [Prevotella veroralis F0319]
          Length = 239

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 69/172 (40%), Gaps = 13/172 (7%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            L    L +     +  +QL++ LD V DP N+G I+R A  F    I  +   +   + 
Sbjct: 74  MLGVFHLPTNGFKELSMNQLVLALDGVQDPGNLGTIIRVADWFGIKDIYCSHDTADCWNP 133

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGLSSDSKKPLEQEIKNDKIAL 231
            + ++  G++  +    +      L KM       +       D +   +QE+ +  + +
Sbjct: 134 KVVQATMGSIARVQLHYVD-----LNKMAESLPADYPIYATLLDGENIYKQELSHHGM-I 187

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVALYITQNH 279
           ++G EGKG+ P  +       ++          ++LNV+ A ++     +  
Sbjct: 188 VMGNEGKGISPLLRTKINRKLYIPSYSSDGNTAESLNVAIATSIVCAEFRRR 239


>gi|124007000|ref|ZP_01691829.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
 gi|123987453|gb|EAY27173.1| tRNA/rRNA methyltransferase [Microscilla marina ATCC 23134]
          Length = 176

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 6/169 (3%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L            +++VLD++   HN+G+  R++ AF  + I      +      +
Sbjct: 8   ELDRLSVEDFKETPKKPVVIVLDNIRSMHNVGSSFRTSDAFLVEKIYLCGITAKPPHREI 67

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIK--NDKIALIL 233
            K+A GA E + +  ++   +AL  +   G+  + +   D    LE+     + K A + 
Sbjct: 68  QKTALGATESVAWQHVATTEEALATLKQEGWTIVAIEQVDKSVSLEKFNFEADKKYAFVF 127

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E  G+  +  + A     +   G   +LN+S +  V ++   ++F+K
Sbjct: 128 GNEVFGVDEEVVKQADVCIEIPQFGTKHSLNISVSMGVVIW---DYFSK 173


>gi|323436083|ref|ZP_08088232.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|321496398|gb|EAQ38693.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 283

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 16/252 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K++ S  QK ++  +       G+  V+      S      L T++  A      +   
Sbjct: 44  IKRITSLGQK-KYRQREGVFVAEGIKVVNE--LLLSSLELVELHTEDVSA-FAKALSPQD 99

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V    P  + K+       Q           P   A+  S L +VLD V DP N+G 
Sbjct: 100 QSKVNETTPAELKKLT-FLKTAQKAVAT---FKMPEAIAIDRSGLTVVLDDVRDPGNLGT 155

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R    F    ++ +K      +  + ++  G+L  +  I     TD    + +     
Sbjct: 156 IIRLCDWFGIKQLVCSKATVDCYNPKVVQATMGSLTRVSIIY----TDIDTYLSNEDRPV 211

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVS 266
            G   D +      +  + + +++G E  G+    +E  T    +   G     ++LNV+
Sbjct: 212 FGTFMDGENIYAASLPQEGV-IVMGNEANGISTSIEELVTKRIAIPRFGITQATESLNVA 270

Query: 267 NAAAVALYITQN 278
            A A+ L   + 
Sbjct: 271 TATAICLSEFKR 282


>gi|313206009|ref|YP_004045186.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445325|gb|ADQ81680.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315022322|gb|EFT35350.1| tRNA/rRNA methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325336550|gb|ADZ12824.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 242

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 97/250 (38%), Gaps = 29/250 (11%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           K +QS ++K +   +     + G   +   L N + +I  + +  +       D  +P  
Sbjct: 8   KILQSLDKK-KFRQKYNLFLVEGNKIIKE-LKNTNIEIESVYSVNSDGIEFLADVLVP-- 63

Query: 91  FPVKTVPPQTIDKI----VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                +  + + K+      K++      L    L +P +    ++ + +VLD + DP N
Sbjct: 64  -----ITEKELKKVSFLKTPKDS------LAVCYLPTPKI--TEDNNINLVLDGLQDPGN 110

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F  + I+ +       +  + ++  G+   +  +        L       
Sbjct: 111 LGTIIRLADWFGIEQIVCSTDTVDVYNPKVIQATMGSFTRVNVVYSDIEQFLLNSPAEN- 169

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKAL 263
              IG   + +  L +     K  L+LG EG G+RP  +        +   G     ++L
Sbjct: 170 ---IGTDMEGEN-LYKTNFPKKFNLVLGNEGNGMRPSVERLMKRNITIPRFGNHRATESL 225

Query: 264 NVSNAAAVAL 273
           NVS AA + L
Sbjct: 226 NVSMAAGIIL 235


>gi|290769952|gb|ADD61721.1| putative protein [uncultured organism]
          Length = 257

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 16/256 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++S   K ++    +     G   V   L     +   L+AT   L+     A    
Sbjct: 8   IKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATAEWLSAHRHLAVE-- 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              V  V  + + +    +   Q LA+   P     +  + +  L + LD V DP N+G 
Sbjct: 63  --DVTEVSEEELSRASLLKTPQQVLAVFEQPDEFVDVSVI-SRSLCLALDDVQDPGNLGT 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F  + I  +     + +    ++  G +  +     ++L + +  +       
Sbjct: 120 IIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLHY-TSLPELIASLED--IPV 176

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNV 265
            G   D +    Q +    + +++G EG G+  + +       ++          ++LNV
Sbjct: 177 YGTFLDGENMYTQPLSAYGL-IVMGNEGNGIGDEVERLINRKLYIPNYPAERETSESLNV 235

Query: 266 SNAAAVALYITQNHFA 281
           + A AV     +   A
Sbjct: 236 AIATAVVCAEFRRQAA 251


>gi|126632662|emb|CAM56560.1| novel protein similar to vertebrate mitochondrial rRNA
           methyltransferase 1 homolog (S. cerevisiae) (MRM1)
           [Danio rerio]
          Length = 206

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 22/208 (10%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLA------TKNALARLDWDANLPHPFPVKTVPPQTIDK 103
            ++GV     AL    R    L         ++A+ R+  +A +     +K V  QT++K
Sbjct: 1   IVFGVAPCLLALTRGRRSASCLFVKSGEGPERDAILRVCQEA-IRRGVQIKRVNKQTLEK 59

Query: 104 IVGKEAVHQGLALETA-------PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
           +     VHQGL L+ +            +L+      L +VLD V DP N+GAILRSA  
Sbjct: 60  MCD-GKVHQGLCLQASCLGFIKEERPITSLEVKNQRPLWLVLDGVQDPMNLGAILRSAYY 118

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL---- 212
              D I+++   S   +  ++K+++G +E +     SNL   ++     G+Q +G     
Sbjct: 119 LGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGWQVVGTVGLE 178

Query: 213 ---SSDSKKPLEQEIKNDKIALILGAEG 237
              S  +         +    L++G EG
Sbjct: 179 EGSSQSNVLSCSDFKMSRPTLLLMGGEG 206


>gi|88799008|ref|ZP_01114589.1| putative tRNA methyltransferase [Reinekea sp. MED297]
 gi|88778235|gb|EAR09429.1| putative tRNA methyltransferase [Reinekea sp. MED297]
          Length = 224

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R + + ++ D V+   N+ AI+R+A +     +   K   P    ++   +A GA   + 
Sbjct: 16  RQNDMTILTDKVHKSQNVSAIMRTADSVGIPTVHMVK---PERGRLVYHHTAGGASRFVD 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            I    L++ +Q + + G        SD      +       ALILGAE  G+ P+  + 
Sbjct: 73  VIVYETLSEGIQSLRNAGMALYAAHWSDRAISYREADYTRPFALILGAEKYGISPEAADA 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     + M G  ++LNVS A+ + L
Sbjct: 133 ADEHLIIPMVGACESLNVSVASGIIL 158


>gi|218199964|gb|EEC82391.1| hypothetical protein OsI_26737 [Oryza sativa Indica Group]
          Length = 343

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  + +V++ ++D  N+ A  RSA A     +      +          + GA + +  
Sbjct: 143 RSYSVCLVVEGLSDFGNVSAAFRSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDI 202

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
              S+  +    +   G++       +    +     +   A+++G E  G+     + +
Sbjct: 203 ELWSSTAECFDALKKRGYRIATTYLGNDSVCVYDMDWSQPTAIVVGNELMGISDDALKLS 262

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 263 DLHCSVPMKGMVDSFNVSVAAGILMHHA 290


>gi|34393586|dbj|BAC83213.1| putative rRNA methylase [Oryza sativa Japonica Group]
 gi|215686941|dbj|BAG90774.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 343

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 1/148 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R+  + +V++ ++D  N+ A  RSA A     +      +          + GA + +  
Sbjct: 143 RSYSVCLVVEGLSDFGNVSAAFRSADALGVQSVHVISCDNNKRYRDNRHVSMGAEKWLDI 202

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
              S+  +    +   G++       +    +     +   A+++G E  G+     + +
Sbjct: 203 ELWSSTAECFDALKKRGYRIATTYLGNDSVCVYDMDWSQPTAIVVGNELMGISDDALKLS 262

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + M G++ + NVS AA + ++  
Sbjct: 263 DLHCSVPMKGMVDSFNVSVAAGILMHHA 290


>gi|149185879|ref|ZP_01864194.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148830440|gb|EDL48876.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 268

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 90/243 (37%), Gaps = 7/243 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---D 82
           ++   K +++  +K +H  +       G+  ++ A          +LA +     L    
Sbjct: 12  SNPTVKALRALREK-KHRKRERKFLAEGLRLLTDARECGHVPETLVLADRRDPHPLLSAL 70

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-SQLLMVLDHV 141
            ++       V    P  + KI GK+   Q +A   A   +      R+ + + +V   +
Sbjct: 71  EESVEASGGEVIETTPDILAKITGKD-NPQAVAGVFAEFDTSLAALDRSCADIWLVAQAL 129

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G +LR+  A    G+I     +   S    +++ GA+      + +  ++    
Sbjct: 130 RDPGNLGTMLRTGDAIGAGGLILIDDCADPFSVEAVRASMGAVFTQGIAQ-AEWSEFESW 188

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           + +   Q +  S    +P           +++G E +GL    +        + M G   
Sbjct: 189 LRAGEGQLVAASLRDAQPYRGAPYAAPCFVMVGNESRGLPEDYEMACDLRVTMPMKGRAD 248

Query: 262 ALN 264
           +LN
Sbjct: 249 SLN 251


>gi|120434617|ref|YP_860307.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117576767|emb|CAL65236.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 178

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 69/154 (44%), Gaps = 3/154 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                   + ++++LD+V   +NIG++ RSA AF    I      +      + K+A GA
Sbjct: 17  DQFKKAEKTPIIVILDNVRSLNNIGSVFRSADAFLIQKIYLCGITAQPPHKDIQKTALGA 76

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGL 240
            + + +  + N    ++K+ + G +   +       +  +   +K    A++ G E KG+
Sbjct: 77  TDTVTWEYVENTVSLVKKLKAEGIKVYAIEQAEGATMLNDFVPEKHQTTAVVFGNEVKGV 136

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +    + ++  +   G   +LN+S +  V L+
Sbjct: 137 QQEVVSASDAVIEIPQLGSKHSLNISVSTGVVLW 170


>gi|332877645|ref|ZP_08445388.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332684394|gb|EGJ57248.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 181

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 69/158 (43%), Gaps = 3/158 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L          + L+++LD+V   +N+G++ R+  AF  + I      +   +  + K+A
Sbjct: 12  LDIEQFKKAEKTPLIVILDNVRSLNNVGSVFRTCDAFLVEKIYLCGITATPPNKEIHKTA 71

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEG 237
            GA + + +    +    ++++ + G   I +    K  +  + +       A+I G E 
Sbjct: 72  LGATDSVAWEYAEDTLQVVERLKAEGVCVISIEQAEKAVMLNDFQPKAHTQYAVIFGNEV 131

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           KG+  +    +  +  +   G   +LNVS +A + ++ 
Sbjct: 132 KGVAQEVVSLSDGVIEIPQYGTKHSLNVSVSAGIVIWE 169


>gi|332880032|ref|ZP_08447716.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682028|gb|EGJ54941.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 217

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++R+   F      + +        + AK A GA + +  
Sbjct: 25  RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGR--FGKRLDAKIAMGAQKWVDV 82

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R  N    +  + + G+Q +  +       L     + K A   G E +GL  +    A
Sbjct: 83  FRYDNTQHCIDSLRAKGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSEQVLSQA 142

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
            +   + M G  ++LN+S A A+ L
Sbjct: 143 DTFLKIPMVGFTESLNISVAVAIVL 167


>gi|255078650|ref|XP_002502905.1| predicted protein [Micromonas sp. RCC299]
 gi|226518171|gb|ACO64163.1| predicted protein [Micromonas sp. RCC299]
          Length = 234

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 117 ETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPS 171
           + +      LDAV   R+  L+ +L+ V D  N+ A+ RS  A      G+I+    +  
Sbjct: 27  QVSEERIARLDAVVQQRSFDLMPILEGVYDIGNVLAVCRSTEALGIGSLGVISDAGLAFK 86

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +S    +++ GA++     +  +  +A++++ + G++ +    +   PLE        A+
Sbjct: 87  QSG---RTSGGAVKWTNLEQWRSTEEAIREVKARGYRVLTTVFEGGHPLEHYDWTVPTAV 143

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ILG E  G+  + +  A    ++ M G  ++LNVS A+++ ++  
Sbjct: 144 ILGNERDGVSDEAKRLADGGVYISMNGFTESLNVSVASSMIMHHA 188


>gi|46191103|ref|ZP_00120535.2| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
 gi|189439683|ref|YP_001954764.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|296453794|ref|YP_003660937.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|189428118|gb|ACD98266.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|296183225|gb|ADH00107.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 292

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 92/268 (34%), Gaps = 24/268 (8%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANL 87
           D  +  +   +++   +     + G  +V  A+      +  L      AL      ++ 
Sbjct: 14  DRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPRIISST 73

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVH------QGLALE-TAPLLSPTLDAVR-----NSQLL 135
                  +            + +H      QG+     A  +    D V          +
Sbjct: 74  LEKIVETSQDATIYVHYCTGDVMHRISPDAQGIVAVGNAESMHAGADDVELGKNGRGPQI 133

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
                V DP N G ++R+A A  CD +I         +  + +S +G+L H+P + + + 
Sbjct: 134 AAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAM-ST 192

Query: 196 TDALQKM--HSWGFQ---TIGLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQ 245
            +       H+ G       G      + L   + +        A++ G E +GL P   
Sbjct: 193 DEFFTWTGDHNMGVWAADVYGTEECKPESLPAVLADKAAVEAPKAVLFGNEARGLEPDIL 252

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
                +  + + G  ++LN+  +AAV L
Sbjct: 253 TRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|281356874|ref|ZP_06243364.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281316432|gb|EFB00456.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 253

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 82/255 (32%), Gaps = 14/255 (5%)

Query: 31  KKMQSFNQK--SRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           +K+++  +   +RH  +     +  GV  V          +   +AT+  LA        
Sbjct: 5   RKLETLLRSLYTRHGRRKSGYCVCEGVRAVGELFARRPELVRFTVATERGLAEYG----- 59

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P    + ++      +  G     QG+    A    P  +       +  LD + DP N 
Sbjct: 60  PVSGALYSLSESRFAEFAGT-VNSQGILAVAAIPAPPGEETPPEVPFIFALDGLGDPGNF 118

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G + R+  +   D +  TK           +S  G    +      NL         +G+
Sbjct: 119 GTVCRTLRSTGLDELWYTKGSIDPYGDKAIRSGLGVQFALKLRCFENLETLRAAAARFGY 178

Query: 208 -QTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            +         +          +  +++G E  G+             + MPG  ++LN 
Sbjct: 179 DKVFLTDPHQGESCFTAPDLFQRSVVVIGGEANGVNDLAAAR---RVTIPMPGNYESLNA 235

Query: 266 SNAAAVALYITQNHF 280
           + AA V L+      
Sbjct: 236 AQAATVFLFEYVRRL 250


>gi|239828668|ref|YP_002951292.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
 gi|239808961|gb|ACS26026.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
          Length = 237

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIP 188
           R   + ++ + V+DPHN  A+LR+A AF    +      +P   + ++ + A    + + 
Sbjct: 45  RTRYITVLTEAVDDPHNQAAVLRTAEAFGVQDVYVVTGKAPFQPNPLVTRHAD---KWLT 101

Query: 189 YIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  ++   ++++ + G+Q       +    L     +   AL+ G E  G+  +    
Sbjct: 102 LQQKPDIVTTIKELQAKGYQVYASYLGEGTLRLGDIDVSRPTALLFGNEHSGVSQEAIRA 161

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY---ITQNHFA 281
           A +   + M G +++ N+S AAA+ALY         A
Sbjct: 162 ADATFMIPMYGFVQSFNISVAAALALYDVTERARQQA 198


>gi|213692751|ref|YP_002323337.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524212|gb|ACJ52959.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458909|dbj|BAJ69530.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 292

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 91/258 (35%), Gaps = 24/258 (9%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPVKTVP 97
           +++   +     + G  +V  A+      +  L      AL      ++        +  
Sbjct: 24  RTKGRERSGRFLIEGPQSVREAVTWRPDVVRDLYVEVSQALEHPRIISSALEKIVETSQD 83

Query: 98  PQTIDKIVGKEAVH------QGLALE-TAPLLSPTLDAVR-----NSQLLMVLDHVNDPH 145
                     + +H      QG+A    A  +    D V       +  + V   V DP 
Sbjct: 84  ATIYVHYCTGDVMHRISPDAQGIAAVGNAESMHAGADDVELGKNGRAPQIAVFWQVRDPG 143

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK---- 201
           N G ++R+A A  CD ++         +  + +S +G+L H+P + + +  +        
Sbjct: 144 NAGTVIRAADAAGCDAVLFVDDCVDVLNPKVIRSTAGSLFHLPVLAM-STDEFFTWTGDH 202

Query: 202 -MHSWGFQTIGLSSDSKKPLEQEIKND-----KIALILGAEGKGLRPKTQETATSMAHLH 255
            +  W     G      + L   + +        A++ G E +GL P        +  + 
Sbjct: 203 NLDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFGNEARGLEPDILTRCGRIVSIP 262

Query: 256 MPGIIKALNVSNAAAVAL 273
           + G  ++LN+  +AAV L
Sbjct: 263 LYGKAESLNLGTSAAVML 280


>gi|254480165|ref|ZP_05093413.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
 gi|214039727|gb|EEB80386.1| RNA methyltransferase, TrmH family [marine gamma proteobacterium
           HTCC2148]
          Length = 215

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSC---DGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           MV D V+   N+ AI+R+  A        +I T+ Y          +A G+   +     
Sbjct: 1   MVTDFVHKQRNLSAIVRNCDAVGIQRMHAVIGTEDY-----KTFRGTAMGSHHWVDVDTH 55

Query: 193 SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            N   AL  + + G+Q +    D       Q        +++GAE +G+     E     
Sbjct: 56  QNPAVALDALKASGYQLVAAHFDEQAADYRQVDYTLPTGILMGAERRGVSAIALERVDRC 115

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G++++ NVS AA + L   Q   
Sbjct: 116 ITIPMVGMVESYNVSVAAGIILAEAQRQR 144


>gi|313902051|ref|ZP_07835464.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467660|gb|EFR63161.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
          Length = 286

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 98/267 (36%), Gaps = 14/267 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K+++   ++ RH  +     + G   V+ AL    R + Q + T    +     A
Sbjct: 7   HNPRIKRLRQLQER-RHRRRLGATLVEGRRFVAEAL-AAGRVVRQAVYTAAFASSAAGAA 64

Query: 86  NLPH----PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD-------AVRNSQL 134
            L         +  VP + + ++   E   QG+  E A               A  +  L
Sbjct: 65  LLRDLAAAGCQLAEVPDRLLAEVALTE-TPQGIVAEVAVDEPGPAGPSWWQGVAAASLPL 123

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++ D V DP N+G +LR+A      G +              ++++GA   +   R  +
Sbjct: 124 ALLPDGVQDPGNLGTLLRAAEGLGAAGAVMVPGTVDPFHPRAVRASAGACLRLALARAGD 183

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             +A +   + G       + +              L++G EG G+ P     AT    +
Sbjct: 184 AAEAARAARAAGLAVWVAEAGAATACWDVDWRRPALLVVGNEGAGVSPAVAGQATGRVAI 243

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            + G I +LNV+ A  + LY      A
Sbjct: 244 PLAGGIGSLNVAMAGTILLYEAARQAA 270


>gi|291232158|ref|XP_002736012.1| PREDICTED: RNA methyltransferase like 1-like [Saccoglossus
           kowalevskii]
          Length = 445

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 110/328 (33%), Gaps = 74/328 (22%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--- 75
            + K+    +  +++ +  +  ++  Q + + L G   +  A+   +     +  ++   
Sbjct: 116 RFEKVNAADKRVRRILTLMRSRKYREQTKKVLLEGRRLIIDAILAGAE-CHTIYFSRVES 174

Query: 76  -NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132
              +   + DA L    P K V      K+       QG+    +      L  +     
Sbjct: 175 LEGIPWYETDAELLR-IPYKEV------KLWSDVVTPQGIMAVFSQPRFEDLPMMSEEQS 227

Query: 133 -QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH----- 186
             L ++ D++ +P N+GA+LRSAVA     I+ TK         + ++ +GA        
Sbjct: 228 IPLTVICDNIREPGNLGALLRSAVAAGSQQILVTKGCVDIWDLKVLRAGAGAHFRTQIHN 287

Query: 187 -IPYIRISN--------------LTDALQKMHS----------------WGFQTIGL--- 212
            +P+  + N                DA +++                     +T+ L   
Sbjct: 288 NLPWDSVKNYLDDDVVVHVADCRTADAFERVEEDDCETESVVDPRTLDLNDVRTMNLLSK 347

Query: 213 --------SSD--------SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM----A 252
                     D          K         K A+++G E  GL  +  + A        
Sbjct: 348 LPNEDLMNDMDVDKKLNCVPTKDFYNIDWTVKSAIVIGGETHGLSKQAVDLADETYGYKV 407

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
           H+ M   + +LN + A +V  +  +  +
Sbjct: 408 HIPMAFGMDSLNAAMATSVVTFEAKRQY 435


>gi|307109015|gb|EFN57254.1| hypothetical protein CHLNCDRAFT_21737 [Chlorella variabilis]
          Length = 201

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 1/152 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   +L +++ + D  N+ A+ RSA A     +   +           +SA+GA + +
Sbjct: 43  AARTFNVLPIVESIYDMGNLAAVCRSADALGFGALHVIRNTRDERYKQSTRSAAGADKWL 102

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                ++  + +      G+Q +          + Q       A I+G E +G+  +   
Sbjct: 103 DVQVFNSTEECVLNAKRLGYQVVATHLSPDAVDISQIDWTRPTAFIMGNEKRGVSCEAVA 162

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            A + A + M G + + N+S AAA+ +Y  + 
Sbjct: 163 LADACAVVPMVGFVDSYNLSVAAALIMYEARR 194


>gi|119484369|ref|ZP_01618986.1| spoU protein [Lyngbya sp. PCC 8106]
 gi|119457843|gb|EAW38966.1| spoU protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 8/152 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  QL ++L+ +  PHN  A LR+  +F    +   +  +     +  + + G+   +  
Sbjct: 32  RTRQLTVILEDIYQPHNASACLRNCDSFGVQDVHIIENRND--FDLNREVSLGSHRWLTI 89

Query: 190 IR-----ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPK 243
            R     I+N    L+K+ S G++ +  +   ++  +EQ    +K+ L+ G E  GL   
Sbjct: 90  SRYNEPKINNTKICLEKLKSQGYKIVATTPHEEEITIEQISVEEKLGLMFGTELNGLSDD 149

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               A  +  + M G  ++ N+S + A+ LY 
Sbjct: 150 AVSQADYLVRIPMVGFSESFNISVSVALCLYE 181


>gi|317153991|ref|YP_004122039.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944242|gb|ADU63293.1| tRNA guanosine-2'-O-methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 226

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 15/182 (8%)

Query: 113 GLALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           G+  E +      +D V   R   L +V+D++ DPHN+ A+LRS  AF    +     Y+
Sbjct: 20  GMQSEISDKRKQRIDQVLARRQKDLTLVMDNIWDPHNVSAVLRSCDAFGVSDVHLY--YT 77

Query: 170 PSESAVLAKSASG-ALEHIPYIRISNLTDALQKM------HSWGFQTIGLS-SDSKKPLE 221
            S+   L K +SG A++ I  IR  +    +  +         G Q +    S + +P+ 
Sbjct: 78  TSQWPDLGKKSSGSAMKWIRLIRHVDAATMVGNLVGGGGSAHDGGQILRTGFSATARPVM 137

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI--TQNH 279
                   A+IL  E +G  P+         ++ M G++++LNVS AAA+ LY   TQ  
Sbjct: 138 DFDFTIPTAIILSNEHRGTSPELAALVPDEVYIPMQGMVQSLNVSVAAAIILYEAFTQRK 197

Query: 280 FA 281
            A
Sbjct: 198 RA 199


>gi|325579151|ref|ZP_08149107.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159386|gb|EGC71520.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 357

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 109/274 (39%), Gaps = 13/274 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           +S  +  +  S     +   +    +     +    ++ E + +YG +            
Sbjct: 83  ESGSVKVMVKSTGVSYKPKEKKTGALSPRAPEKIKKNRAEEMKVYGENACLELFAERPES 142

Query: 68  IFQLLATKNALARLDWD-ANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETAPL---- 121
           I ++ AT     R+    + L     V   V    +  + G E  H G+ +         
Sbjct: 143 IVRVWATVQMAHRIGEIFSYLATNKKVYHVVDSDELSLVSGTE-HHGGICMLVKKQRIFS 201

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L   LD  R    L+VLD VN+  N+G ++R+   +    ++T +      +    + A 
Sbjct: 202 LQGYLDVPRQEDCLVVLDQVNNAQNLGGVVRTCAFYGIKNVVTNQ-VEQLYAPAAMRVAE 260

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGL 240
           G +EHI  +   +   AL+ +   G+Q I +S++ +   LEQ    +K+AL+L +EG   
Sbjct: 261 GGMEHIRILETESTEIALEALRKAGYQIIHVSTNKQGVALEQLKFAEKVALVL-SEGS-- 317

Query: 241 RPKTQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273
               ++       L +   +K  LN++  A + L
Sbjct: 318 TDDIRDKQDVNVRLSLSNPLKAGLNIAVNAGILL 351


>gi|149199824|ref|ZP_01876854.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149137112|gb|EDM25535.1| tRNA/rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 168

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +A    ++++VLD +   HN+G I R A A + + + T    +      L K+A G  E 
Sbjct: 12  EASEKVEVIVVLDRLRSAHNVGNIFRLADAANVEAVYTCGYTASPPHPKLEKTAMGTDEF 71

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +      +  +A+  +   G++   + + DS   + +   + K A + G E  G++ +T 
Sbjct: 72  VNCEHFDHSLEAVGSLKKNGYRVYAVDTIDSAIDVHEAQFSGKCAFVFGNEALGIQQETL 131

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           E       L+  G   ++NVSN AAV L+  
Sbjct: 132 EACDEYIRLNAHGRKNSINVSNCAAVVLFQA 162


>gi|307719082|ref|YP_003874614.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
           6192]
 gi|306532807|gb|ADN02341.1| hypothetical protein STHERM_c14010 [Spirochaeta thermophila DSM
           6192]
          Length = 249

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 4/155 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + + L+++  PHN  A+LRSA A     +   +  +   +      + G    +  
Sbjct: 35  RTRYVTVALENIYHPHNANAVLRSAEAMGLQDVHIVED-AVPFTPSKG-VSMGTARWLSL 92

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN-DKIALILGAEGKGLRPKTQET 247
            R  +   A+ ++   G++ I  +   +  P+++      K A   G E  GL     E 
Sbjct: 93  HRYRDPRMAVSRLREEGYRIIATTPHRTPTPVDEFDVTRGKCAFFFGGELPGLSDAVLEA 152

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G +++LN+S  A + L+       K
Sbjct: 153 ADEYLTIPMYGFVESLNISVTAGIVLHNVVQRLRK 187


>gi|255038542|ref|YP_003089163.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
 gi|254951298|gb|ACT95998.1| tRNA/rRNA methyltransferase (SpoU) [Dyadobacter fermentans DSM
           18053]
          Length = 178

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L    +   ++D  R S    L++VLD++   +NIG+  R+A AF  + I+         
Sbjct: 4   LSVDEMGRMSVDEFRESEKFPLVIVLDNIRSLNNIGSFFRTADAFRAEKIVLCGYTQQPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKI 229
              + +SA GA   + + +  +  DA+  + S G+    +       L Q+      D  
Sbjct: 64  HREITRSALGAEMAVAWEKNPSAVDAVNALKSQGYNVWCVEQAEGSVLLQDFEPAAGDPY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A + G E +G+  +    +     +   G   + NVS +A + L+
Sbjct: 124 AFVFGNEVEGVADEVIAASDGCLEIPQFGTKHSFNVSVSAGIVLW 168


>gi|119472552|ref|ZP_01614600.1| RNA methyltransferase, TrmH family protein [Alteromonadales
           bacterium TW-7]
 gi|119444876|gb|EAW26176.1| RNA methyltransferase, TrmH family protein [Alteromonadales
           bacterium TW-7]
          Length = 243

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 95/248 (38%), Gaps = 15/248 (6%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + ++  Q     + G   V   LN+    +  + AT    A ++   +     
Sbjct: 8   KLIRQLGQKKYRKQYNQYLVQGEKNVLELLNSSLNAVD-VFATS---AFINAHQSCFPST 63

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
            +       + K      V    A+    +    L  ++   L++ LD V+DP N+G I+
Sbjct: 64  DIIEADEDVLTK--ASTLVSNNAAIAIVDMPKADLPKIKG--LILALDGVSDPGNLGTII 119

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R A  +    I+T+   + + +     +  G+   +   ++ +L   LQ +        G
Sbjct: 120 RVADWYGIKHIVTSTDSADAYNPKTISATMGSFVRVSVSQV-DLPAYLQTLK---LPIYG 175

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
              D  + + +   N +  L++G+E  G+R       T    +   G  ++LNV+ A  +
Sbjct: 176 AFLDG-QSVHKTQFNGEGVLLMGSESHGIRQACAGLVTDKITIPAFGEAESLNVAMATGI 234

Query: 272 AL--YITQ 277
            L  +  Q
Sbjct: 235 ILDNFKRQ 242


>gi|196011996|ref|XP_002115861.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
 gi|190581637|gb|EDV21713.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
          Length = 328

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 101/277 (36%), Gaps = 38/277 (13%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL--DWDANLPHPFPVKTVP 97
           +R+  +   + + G++ +  A N   +      +  N       ++  ++      K +P
Sbjct: 44  NRNNKKSSIILIDGLNVIKEAFNAGLQLHTFFYSNDNIFDEHFSEYIFDISDECLCK-IP 102

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAIL 151
              ++ +   +   +G+A       + + D +  +       + ++ D+V DP N+G I+
Sbjct: 103 KWYLNSMTSVQTN-RGVAALFFKPKTSSFDEISMASDKELLPVTLICDNVRDPGNLGNII 161

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHSWGFQT 209
           RSA A +C  +I T   +      + +SASG+   +P             + + S  F  
Sbjct: 162 RSAAAANCSSVILTHGCADPWQPKVMRSASGSQFQLPIYYDITWGQISCSKALKSMNFYL 221

Query: 210 I--------------GLS--SDSKK--PLEQEIKNDKI-ALI-LGAEGKG----LRPKTQ 245
                            S  S+ KK  P        K  AL+ +G E  G          
Sbjct: 222 AECMRDQYQYLQNTRSTSHISNEKKLVPYYDIDWTHKSGALLAIGNEAHGFKLNTTASVT 281

Query: 246 ETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           E         + +   I++LNV+ AA++ L+      
Sbjct: 282 ECCDITQRITIPLCHRIQSLNVATAASIILFEASRQM 318


>gi|269303406|gb|ACZ33506.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 265

 Score =  139 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 88/261 (33%), Gaps = 9/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +++   K+  +   K     +     + G   +  AL           +T  +    ++ 
Sbjct: 6   KHNPLVKE--ALALKRSRCRKSSWFLVEGAREIQKALRAGYLCQHVFCSTHLSEKEKEFL 63

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLD 139
             L      +      T+ ++   +  H          +    D +          ++++
Sbjct: 64  YELKRNSTKILYCLDSTLAQL-SFKEHHDSFVAVIQKRVWNKEDFLIQRKNAQPFYLIIE 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GAILR A     DG+I         +  + +S+ GA+  +P + IS   +  
Sbjct: 123 QVEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISR-EEGK 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +     G+     S  ++     +      AL+ G+E  GL         S   L M G 
Sbjct: 182 ELFKQEGWTVFVTSPRAETMYFSKNYLGPTALVFGSEKDGLTEDWFSEDFSEIALPMLGE 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN++ + A   Y      
Sbjct: 242 SDSLNLATSVAAVAYEVVRQR 262


>gi|307564841|ref|ZP_07627369.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
 gi|307346563|gb|EFN91872.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
          Length = 181

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 9/172 (5%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L        +   L++VLD V   +N+G+I RS  AF    +      +   +A 
Sbjct: 7   IEMQRLSLAEFKEAKKLPLVVVLDDVRSLYNVGSIFRSGDAFRIKAVYLCGITATPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK----KPLEQEIKNDKI-A 230
           + K+A G  + + +   +   DA+  +H  G+    +         + L + +    + A
Sbjct: 67  IHKTALGGEDSVEWKYFTRTEDAIVALHDQGYYVYCVEQVEGSVKLQDLSKILTPHSLYA 126

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +I+G E KG++    + + +   +   G   +LNVS  A + ++     FAK
Sbjct: 127 IIMGNEVKGVKQTVVDLSDNSIEIPQFGTKHSLNVSTTAGIVIWE----FAK 174


>gi|301167940|emb|CBW27526.1| tRNA (guanosine-2'-O-)-methyltransferase [Bacteriovorax marinus SJ]
          Length = 249

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 4/167 (2%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           +   L+   LD  R S L ++L+ + D  N+ AI R+   F    +   +   P      
Sbjct: 45  QRKELIERILDQ-RISGLSVILESLGDLGNLQAISRTCDNFGVQKLEIIETKGP--MKWT 101

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGA 235
            +++ GA + +   +     D LQ     G Q +  + SD   P  +       AL++G 
Sbjct: 102 NRTSQGAHKWVTMQKWYETKDCLQYFKDRGVQIVSTAFSDKAIPYTEVDFTKPTALLMGN 161

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           E  G+    +E +     +   G  ++LNVS AAA+ +    +   K
Sbjct: 162 ESFGISEVAREMSDVECIIPSYGYSQSLNVSVAAAIVIEHATSQIRK 208


>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
          Length = 1145

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 114/315 (36%), Gaps = 58/315 (18%)

Query: 16  KDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           + S   ++ R   + K+ +S  +        + L + G+HTV            +L   K
Sbjct: 166 QRSSSPRVSRQQDEPKEEESGGEGVVEQLPKDELHIVGLHTVLETFKCRPESFQRLYINK 225

Query: 76  NALARLDWDAN------LPHPFPVKTVPPQ--TIDKIVGKEAVHQGLAL----------- 116
               +            + H  P +    +   ++++  K   H+G+             
Sbjct: 226 ETYDKQSAALGAIIRHMVEHKLPYRFFDKEDGQMERVA-KNRHHEGVCAVIKSKKVLTPE 284

Query: 117 ------------ETAPLLSPTLDAVRN--------SQLLMVLDHVNDPHNIGAILRSAVA 156
                       +T P+        +           ++++LD V +P NIG+I+R+   
Sbjct: 285 EAFEKEMNKTFKQTPPVSHSFTSTNKQTSGETNVVRPIVVLLDGVENPMNIGSIVRTCAG 344

Query: 157 FSCDGIITTK-------RYSPSESAVLAKSASGALEHIPYIRISNLTDAL---QKMHSWG 206
           F  + +                 S     S+ GA+EH+  I I+    A+   ++     
Sbjct: 345 FGVETLYLFNQEGASASGRVNPFSTASYLSSRGAIEHLDVIPITARNTAINMIKEFAEQK 404

Query: 207 FQTIGLS---SDSKKPLEQE-----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           ++ +  +   SD    L  E     +    + LI G+E  G+ P   + +T+   +   G
Sbjct: 405 WEIVSTATAISDKALTLFSEGSALTLGTKPLLLIFGSESHGINPGIAKLSTATLTIPGTG 464

Query: 259 IIKALNVSNAAAVAL 273
           +I +LNVS +AA+ L
Sbjct: 465 LIDSLNVSQSAAIIL 479


>gi|315223488|ref|ZP_07865344.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314946523|gb|EFS98515.1| tRNA guanosine-2'-O-methyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 220

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++R+   F      + +        + AK A GA + +  
Sbjct: 28  RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGR--FGKRIDAKIAMGAQKWVDV 85

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R ++    +  + + G+Q +  +       L     + K A   G E +GL  +    A
Sbjct: 86  FRYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSQQVLSQA 145

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
            +   + M G  ++LN+S A A+ L
Sbjct: 146 DTYLKIPMVGFTESLNISVAVAIVL 170


>gi|182413334|ref|YP_001818400.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177840548|gb|ACB74800.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 262

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 94/253 (37%), Gaps = 19/253 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           + ++++S  +K +H        + G   V+  L        ++ AT         +   P
Sbjct: 6   EIQRLRSLREK-KHRETLGLFVIEGEKVVAELL-AVGFPFEEIFATHAWNRPGPAEDATP 63

Query: 89  HPFP-----VKTVPPQTIDKIVGKEAVHQGLA---LETAPLLSPTLDAVRNSQLLMVLDH 140
            P       +  +    + +I          A   L+  PL    L    N  L + LD 
Sbjct: 64  SPLRDARPRIVRLDAADMARISHFPTPSSVFAVGRLQRQPLPPDAL----NHGLTLALDG 119

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           V D  N+G +LR A  F+ D ++ +   +      +  ++ G+   +    +  L  AL 
Sbjct: 120 VQDAGNVGTLLRIADWFALDRVLLSPDCADVFHQKVINASMGSFARVQVHSVE-LPTALA 178

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +       +G     +         D + +++G+EG+GL P   E  +    +   G  
Sbjct: 179 GVR---VPVLGCDLTGENVHALPPLADAV-IVIGSEGRGLSPAVAELVSRRVTIPRYGQA 234

Query: 261 KALNVSNAAAVAL 273
           ++LN + AAA+  
Sbjct: 235 ESLNAAIAAAIVC 247


>gi|305667310|ref|YP_003863597.1| spoU protein [Maribacter sp. HTCC2170]
 gi|88709357|gb|EAR01590.1| spoU protein [Maribacter sp. HTCC2170]
          Length = 216

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIP 188
           R   + + ++ V   HN  A++RS   F   D  +   R+      +    A GA + + 
Sbjct: 29  RTKYVTVAIEDVFQLHNTSAVIRSCEVFGLQDAHVIENRFG---KRLDKNIAMGAQQWVD 85

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             R  +    +  +   G+Q I  +       L     + K AL  G E +GL  +  + 
Sbjct: 86  VKRHEDTESCISHLRDQGYQIIATTPHDDSCLLNDFNLDKKTALFFGTEKEGLSEEVMQK 145

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     + M G  ++LN+S +AA+ L
Sbjct: 146 ADGFLKIPMVGFTESLNISVSAAIIL 171


>gi|309798986|ref|ZP_07693243.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302]
 gi|308117390|gb|EFO54809.1| SpoU rRNA Methylase family protein [Streptococcus infantis SK1302]
          Length = 128

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 2/128 (1%)

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++R+A A    G+I + + +   S    +S  G+  H+P  R+  +   +++        
Sbjct: 1   MIRTADAAGFSGVIVSSKSADIYSLKTLRSMQGSHFHLPIYRMP-VEAFVEEAKKGNLPI 59

Query: 210 IGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +  +   K K   + ++ +  AL++G EG+G+ P   + A  + H+ M G  ++LNV+ A
Sbjct: 60  LATTLSQKSKDYRELVQLEDFALVMGNEGQGISPFMTDQADQLVHISMKGQAESLNVAIA 119

Query: 269 AAVALYIT 276
           A + ++  
Sbjct: 120 AGILMFYL 127


>gi|62955359|ref|NP_001017695.1| RNA methyltransferase-like protein 1A [Danio rerio]
 gi|82178059|sp|Q566V3|RML1A_DANRE RecName: Full=RNA methyltransferase-like protein 1A
 gi|62202803|gb|AAH93318.1| RNA methyltransferase like 1 [Danio rerio]
 gi|182890496|gb|AAI64530.1| RNA methyltransferase like 1 [Danio rerio]
          Length = 435

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 107/334 (32%), Gaps = 62/334 (18%)

Query: 3   LISKKKSE--KIFSLKDSHYAKLRRNHRDYK--KMQSFNQKSRHTSQPENLFLYGVHTVS 58
            +S++  E  +I  LK +     +    D +  ++ S  +      +   + L G   + 
Sbjct: 92  FVSERAEESSQINKLKLAGLRFEKAPAGDNRLARVSSVARSRAFRDKEGKVLLEGRRLIC 151

Query: 59  AALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL- 116
            AL+  +       +    L  L  D         VK    +    +V      QGL   
Sbjct: 152 DALSAGASPQMIFFSLLERLQELPLDKLQQAKLIKVKYEDIKLWSDLV----TPQGLIAI 207

Query: 117 ----ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
               + + L  P    +++  L ++ D+V D  N+G ILR A A   D ++ +K    + 
Sbjct: 208 FSKPDASRLTFPKDARLQSVPLFLICDNVRDAGNLGTILRCAAAAGGDRVLLSKGCVDAW 267

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP------------- 219
              + +SA GA   +P     +  D  + +       + ++ +                 
Sbjct: 268 EPKVLRSAMGAHFRLPVFPNLDWDDISKHLPKN--VIVHVADNYSTSTKQLVSGQTENVS 325

Query: 220 -----------------------------LEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                                          +       AL++G E  GL  +    A  
Sbjct: 326 SDDYSESDSDDDDDEEEDEDSLPHVKPQVYHECWAQRSAALVIGGETHGLSVEALRLAEE 385

Query: 251 ----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + M   +++LN + AA + L+  +   
Sbjct: 386 TDGKRLFVPMAPGVESLNSAMAAGILLFEGRRQL 419


>gi|60593966|pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
 gi|60593967|pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
           Streptomyces Viridochromogenes
          Length = 287

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 10/246 (4%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
            ++   +  +++ Q+        ++     + GV  +S A+ +       L   +  L++
Sbjct: 13  RRITSRNARFQQWQALLGNRNKRTRAGEFLVXGVRPISLAVEHGWPVRTLLYDGQRELSK 72

Query: 81  LDWDANLPHPFPVKTVP--PQTIDKIVGK-EAVHQGLALETAPLLSPTLDAVRNSQLLMV 137
             W   L      + +   P  + ++  K EA  + +A+   P        VR   L ++
Sbjct: 73  --WARELLRTVRTEQIAXAPDLLXELGEKNEAPPEVVAVVEXPADDLDRIPVREDFLGVL 130

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN--- 194
            D    P NIG+I+RSA A    G+I     +        +S++G+L  +P +R+ +   
Sbjct: 131 FDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGE 190

Query: 195 LTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           + D ++   + G     +G        +          L++G E  GL    +       
Sbjct: 191 VXDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTV 250

Query: 253 HLHMPG 258
            +   G
Sbjct: 251 SIPXAG 256


>gi|86160595|ref|YP_467380.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777106|gb|ABC83943.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 225

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 5/162 (3%)

Query: 116 LETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
               P     +DAV   R   L +V++   DP N+ A+LR+  AF    +   +      
Sbjct: 7   AFVLPERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQTLHAVEGPMKPY 66

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIAL 231
                K +  A + +   R S+  + L  + S GF        +   P+       K+AL
Sbjct: 67  DRN-KKISQNADKWLDVRRWSSTAECLAHLRSEGFAIYATHLGERSTPMAGLSFAGKVAL 125

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + G E +G+  +    A +   + M G +++LNVS AAA++L
Sbjct: 126 VFGNEQRGVSEEALAVADACYAIPMRGFVQSLNVSVAAAISL 167


>gi|145638666|ref|ZP_01794275.1| rRNA methylase [Haemophilus influenzae PittII]
 gi|145272261|gb|EDK12169.1| rRNA methylase [Haemophilus influenzae PittII]
 gi|309750160|gb|ADO80144.1| Putative rRNA methylase [Haemophilus influenzae R2866]
          Length = 351

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A     +  I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD  RN   L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   S    + A G  E+I  +   ++  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSGASMRVAEGGAEYIRVLETDDIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I +S + +  PL++    +K+  +L +E      ++  T+  +   L + 
Sbjct: 273 MHLRKSGYQIIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATSEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|256820355|ref|YP_003141634.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
 gi|256581938|gb|ACU93073.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
           7271]
          Length = 220

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++R+   F      + +        + AK A GA + +  
Sbjct: 28  RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGR--FGKRLDAKIAMGAQKWVDV 85

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R ++    +  + + G+Q +  +       L     + K A   G E +GL  +    A
Sbjct: 86  FRYNDTQSCIDALRAQGYQIVATTPHKDAYFLNDFDISKKSAFFFGTEKEGLSEQVLSQA 145

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
            +   + M G  ++LN+S A A+ L
Sbjct: 146 DTYLKIPMVGFTESLNISVAVAIVL 170


>gi|167753955|ref|ZP_02426082.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
 gi|167658580|gb|EDS02710.1| hypothetical protein ALIPUT_02240 [Alistipes putredinis DSM 17216]
          Length = 228

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 5/166 (3%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   +L  TLD+ R   + ++ ++     N  A++R   AF    I T +      +  +
Sbjct: 26  ERRQVLQRTLDS-RTRYMTILTENTYHAQNASALVRHCEAFGVQDIHTIETRC-KFNPNV 83

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILG 234
                G  + I   R     +A+  +   G++ +  +     K P   ++      L+ G
Sbjct: 84  NIV-RGTDKWIDLHRHRTTAEAIADLKGRGYRIVATTPHREDKTPETFDVAASPFVLVFG 142

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +    A     + M G++++LNVS +AA+ +Y+  +  
Sbjct: 143 TEHAGISDEIVAAADEFLRIPMCGMVESLNVSASAAILIYMLSSRM 188


>gi|153806377|ref|ZP_01959045.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
 gi|149131054|gb|EDM22260.1| hypothetical protein BACCAC_00640 [Bacteroides caccae ATCC 43185]
          Length = 255

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 95/249 (38%), Gaps = 21/249 (8%)

Query: 41  RHTSQPENLFL-YGVHTVSAALNNPSRKIFQL---LATKNALARLDWDANLPHPFPVKTV 96
           +   + E +FL  G   V   L +              ++   R++  A          V
Sbjct: 18  KKIRKEERVFLAEGPKLVGDLLGHFPCCFLAATASWIQEHPDLRINEIA---------EV 68

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA 156
             + + +    +   Q LA+   P  + T    R+S L + LD V DP N+G I+R A  
Sbjct: 69  SQEDLSRASLLKTPQQVLAVFEQPQYTLTPGVARHS-LCLALDDVQDPGNLGTIVRLADW 127

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  + II ++      +    ++  G +  +     ++L D ++ +        G   + 
Sbjct: 128 FGIEHIICSQNTVDVYNPKTIQATMGGIARVKVHY-TSLPDFIRSLGE-DIPVFGTFLNG 185

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVA 272
           K   EQ +  + + +++G EG G+  + +       ++          ++LNV+ A AV 
Sbjct: 186 KNMYEQPLTANGL-IVMGNEGNGIGKEVETLINRKLYIPNYPQGKETSESLNVAIATAVI 244

Query: 273 LYITQNHFA 281
               +   A
Sbjct: 245 CAEFRRQAA 253


>gi|149276476|ref|ZP_01882620.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
 gi|149232996|gb|EDM38371.1| putative SpoU rRNA methylase family protein [Pedobacter sp. BAL39]
          Length = 219

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 86/212 (40%), Gaps = 13/212 (6%)

Query: 78  LARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS---Q 133
           L RL   A+L  +         +  D+      + +   L+   L   +++  +      
Sbjct: 11  LKRLVSPADLNANKGASYREKRKKTDETTNNTGMEK---LKLDELNRVSIEEFKEQEKLP 67

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++VLD+V   HNIG+I R+   F+   +      +      + K+A GA + + +    
Sbjct: 68  LVVVLDNVRSMHNIGSIFRTGDGFAITQLCLCGITAQPPHREIEKTALGATQSVDWKHYE 127

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATS 250
           +  +A++ +   G+  I +   S   +    K   + K ALI G E  G+  +  E    
Sbjct: 128 STLEAVKALREEGYLIIAVEQASGSTMLNTFKPQQDQKYALIFGNEVNGVSDEVMEVIDE 187

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   G   + N+  +A + L+   + FAK
Sbjct: 188 CIEIPQFGTKHSFNIVISAGIVLW---DFFAK 216


>gi|15618441|ref|NP_224726.1| rRNA methylase [Chlamydophila pneumoniae CWL029]
 gi|15836061|ref|NP_300585.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|16752511|ref|NP_444773.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|33241882|ref|NP_876823.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|4376820|gb|AAD18670.1| rRNA Methylase [Chlamydophila pneumoniae CWL029]
 gi|8163389|gb|AAF73643.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|8978901|dbj|BAA98736.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|33236392|gb|AAP98480.1| tRNA methylase [Chlamydophila pneumoniae TW-183]
          Length = 265

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 88/261 (33%), Gaps = 9/261 (3%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
           +++   K+  +   K     +     + G   +  AL           +T  +    ++ 
Sbjct: 6   KHNPLVKE--ALALKRSRCRKSSWFLVEGAREIQKALRTGYLCQHVFCSTHLSEKEKEFL 63

Query: 85  ANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----QLLMVLD 139
             L      +      T+ ++   +  H          +    D +          ++++
Sbjct: 64  YELKRNSTKILYCLDSTLAQL-SFKEHHDSFVAVIQKRVWNKEDFLIQRKNAQPFYLIIE 122

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
            V  P N+GAILR A     DG+I         +  + +S+ GA+  +P + IS   +  
Sbjct: 123 QVEKPGNVGAILRIADGAGVDGVILCNPIVDLYNPNVVRSSLGAVFSLPILSISR-EEGK 181

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           +     G+     S  ++     +      AL+ G+E  GL         S   L M G 
Sbjct: 182 ELFKQEGWTVFVTSPRAETMYFSKNYLGPTALVFGSEKDGLTEDWFSEDFSEIALPMLGE 241

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN++ + A   Y      
Sbjct: 242 SDSLNLATSVAAVAYEVVRQR 262


>gi|221104729|ref|XP_002169584.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog, partial [Hydra magnipapillata]
          Length = 183

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 16/154 (10%)

Query: 137 VLDHV------NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +LD +       DP N+GAI+RSA  F  D II  ++ S   +A ++K +SGA+E     
Sbjct: 24  ILDRLCGGRPHQDPMNLGAIIRSATYFGVDKIIVNEKNSCGLTATVSKVSSGAMEWASVY 83

Query: 191 RISNLTDALQKMHSWGFQTIGL-----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              ++   L+ + ++ +  IG      +            + +  L++G EG G+ P   
Sbjct: 84  STRDMQRLLKDLLNYDWNLIGTVTKDYTQSKVHSCHDVQLSKRNVLVIGNEGFGMNPLIT 143

Query: 246 ETATSMAHLH-----MPGIIKALNVSNAAAVALY 274
              T +  +      +P  + +LNVS A  + L+
Sbjct: 144 SICTKLVTIPSFNDRLPEGLDSLNVSVATGILLH 177


>gi|288925042|ref|ZP_06418978.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
 gi|288338232|gb|EFC76582.1| RNA methyltransferase, TrmH family [Prevotella buccae D17]
          Length = 270

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 91/254 (35%), Gaps = 22/254 (8%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++          G   V   L      +  L AT+    +    ++         V  +
Sbjct: 16  KKNRKAEGKFVAEGPKIVGELLAVGQASL--LAATREWFEKNSPISSSTEK---YEVTEE 70

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVLDHVNDPHNIGA 149
            + KI   +     + +   P    T  ++            S L++ LD V DP N+G 
Sbjct: 71  ELRKISFLQHPQMVIGVFDIPNKHSTPPSITQEAYTASDAWDSSLILALDGVQDPGNLGT 130

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F    I+ ++  + + +    ++  G++     +  ++L+  L+ + +     
Sbjct: 131 IIRIADWFGITDIVCSEDTADAYNPKTVQATMGSIARTKIVY-TDLSAYLESLPNET-PV 188

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNV 265
            G   D     EQ + +  + +I+G EGKG+  +          +          ++LNV
Sbjct: 189 YGTMLDGTDIYEQSLTHHGV-IIMGNEGKGISKEITRYINHRLFIPGYPKDRPSAESLNV 247

Query: 266 SNAAAVALYITQNH 279
           + A A+     +  
Sbjct: 248 AIATAITCAEFRRR 261


>gi|89889558|ref|ZP_01201069.1| tRNA/rRNA methyltransferase, SpoU family [Flavobacteria bacterium
           BBFL7]
 gi|89517831|gb|EAS20487.1| tRNA/rRNA  methyltransferase, SpoU family [Flavobacteria bacterium
           BBFL7]
          Length = 175

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L          + L++VLD+V   +NIG++ RSA A+  + I      +      +
Sbjct: 8   ELDRLSVDRFRESDKTPLIIVLDNVRSLNNIGSVFRSADAYRVEKIYLCGITAQPPHKDI 67

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILG 234
            K+A GA E + +    +  D +++++  G  T  +  + DS      +    K+A+++G
Sbjct: 68  RKTALGATETVAWEYRDHTIDIIKELNEQGVTTCAIEQAEDSVSLRGFKPSTKKVAVVMG 127

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            E KG++ +  ++  ++  L   G   +LN+S    + +Y
Sbjct: 128 NEVKGVQQEVVDSCDTVIELEQYGTKHSLNISVCTGIVIY 167


>gi|302037012|ref|YP_003797334.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira
           defluvii]
 gi|300605076|emb|CBK41409.1| putative 23S rRNA methyltransferase RlmB [Candidatus Nitrospira
           defluvii]
          Length = 272

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 88/240 (36%), Gaps = 11/240 (4%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LP 88
            ++   +  R   +     L G   +   L +  + I  L+ T   L R   +     + 
Sbjct: 15  HIRDVVKTKRTRDRERVFVLEGTKPILELLQSAPQHIVCLVVTPMFLERQPPEIAQQIVS 74

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
               V + P   + ++   E     LA+   P  + +    +     +  D + DP N+G
Sbjct: 75  SGCTVHSCPEHQLAQLSDVETSSGVLAIVHQPTWNQSAILAQPKIFGLYGDMLQDPTNMG 134

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R+A       +          +  + ++ +GAL  +P    ++    L+++ +    
Sbjct: 135 TIIRTAAGLDVSALWLAPHSVDVFNPKVVRATAGALFQLPIFPHTS----LEELQNLDCV 190

Query: 209 TIGLS---SDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            I      S+   P+        +  L +G+E +GL     + AT    + +   +++LN
Sbjct: 191 IIAADAGTSEGCVPIRAIRSIPARTVLAIGSESRGLSEPVLDAATVRCTIPLKPGVESLN 250


>gi|303237755|ref|ZP_07324314.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
 gi|302482041|gb|EFL45077.1| RNA methyltransferase, TrmH family [Prevotella disiens FB035-09AN]
          Length = 231

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 78/220 (35%), Gaps = 10/220 (4%)

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
            R+  QL   +      D  A   H   +         K V      Q   L    L  P
Sbjct: 18  GREKHQLFVAEGHKVVADLVAAGYHAEDIFDEEDDI--KKVSFLQHPQ-AKLGVFRLPEP 74

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
               +  ++L + LD V DP N+G I+R A  F    I  +   +   +  + ++  G++
Sbjct: 75  DKVLLPTNELALALDGVQDPGNLGTIIRIADWFGIKHIFCSMETADCWNPKVVQATMGSI 134

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +      +L   L  +    +   G   D     +Q +    + +I+G EGKG+  + 
Sbjct: 135 ARVKLHY-GDLKAVLNALPD-DYPVYGTLLDGDDIYKQSLTAHGM-IIMGNEGKGMTEEI 191

Query: 245 QETATSMAHLHMP----GIIKALNVSNAAAVALYITQNHF 280
           ++       +          ++LNV+ A A+     +   
Sbjct: 192 RKCVNRKLFIPHFASGESHAESLNVAIATAIVCSEFRRRR 231


>gi|269126608|ref|YP_003299978.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311566|gb|ACY97940.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 186

 Score =  138 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + +L ++++ V  P N+G+I+R+   F  + +      +P       K+A G    +P+ 
Sbjct: 27  HGRLGLIVESVTQPFNVGSIVRTCAVFGVEHLWLAGNTTPPTHRNAGKTALGTERLVPWS 86

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +      A+++ H  G + I L       PL +      + L +G E  G  P   E A 
Sbjct: 87  QAGTPQQAVREAHDQGLRVIALELAGGAIPLHRAPLEGDVCLAVGGEDHGCSPALLEAAD 146

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++A++   G + +LNV+ A A+AL   +  
Sbjct: 147 AVAYIPQIGRVGSLNVAVATAIALAEARRR 176


>gi|282880630|ref|ZP_06289336.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
 gi|281305525|gb|EFA97579.1| RNA methyltransferase, TrmH family [Prevotella timonensis CRIS
           5C-B1]
          Length = 176

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 3/166 (1%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L            L++VLD V   +N+G++ RS  AF  + +      +      
Sbjct: 7   IEMNRLSVEEFKEADKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITATPPHPE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALI 232
           + K+A G  + + +   ++ T+A++++    +    +   +    L+    N   + A++
Sbjct: 67  IHKTALGGEDSVAWRYFASATEAVEELKRNEYFVYSIEQVEGSTKLQHLTLNRHQRYAVV 126

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            G E KG+   T +       +   G   +LNVS  A + ++    
Sbjct: 127 FGNEVKGVNQTTVDACNGCLEIPQFGTKHSLNVSVTAGIVVWEFAR 172


>gi|295402439|ref|ZP_06812392.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112708|ref|YP_003991024.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
 gi|294975530|gb|EFG51155.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217809|gb|ADP76413.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
          Length = 237

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIP 188
           R   + ++ + V+DPHN  A+LR+A AF    +      +P   + ++ + A    + + 
Sbjct: 45  RTRYVTVLTEAVDDPHNQAAVLRTAEAFGVQDVYVVAGRAPFQPNPLVTRHAD---KWLT 101

Query: 189 YIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  ++  A+Q + + G++       +    L     +   AL+ G E  G+  +    
Sbjct: 102 LRQQPDIVTAIQDLQAKGYRVYASYLGEGTIRLCDIDVSQPTALLFGNEHSGVSQEAIRV 161

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY---ITQNHFA 281
           A +   + M G +++ N+S AAA+ALY         A
Sbjct: 162 ADATFMIPMYGFVQSFNISVAAALALYDVTERARRQA 198


>gi|284045070|ref|YP_003395410.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
 gi|283949291|gb|ADB52035.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
          Length = 245

 Score =  138 bits (348), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 89/268 (33%), Gaps = 37/268 (13%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQ 70
            I S  +    +LRR  R            R   +       G   ++AA     R + +
Sbjct: 3   PITSPHNERLKELRRLAR-----------KRGRDESGRFVAEGEDLLAAADEAGWRPVER 51

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
             A  +               P   V    +  +    +  + LA+              
Sbjct: 52  YCAAGS-------------GLPGTEVEADVLAHVSQLGSGTRALAV-----YEQRWADAP 93

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L + L  + DP N+G +LRSA+AF    +      +        +++ GA+  +P  
Sbjct: 94  AGPLCVYLHGIADPGNVGTVLRSALAFGAASVALGPGCADPFGPKAVRASMGAVFQVPLA 153

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R S    AL         TI L + +          +   L++GAE  GL     E    
Sbjct: 154 RASGDVAALP------GTTIALDAHAGSGPLHGPLGEPATLLIGAERAGLPEALLEACDR 207

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
            A + +    ++LN + AA +ALY    
Sbjct: 208 TARIPIRS--ESLNAAMAATIALYEATR 233


>gi|227546236|ref|ZP_03976285.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133084|ref|YP_004000423.1| spou2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481810|ref|ZP_07940838.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688754|ref|YP_004208488.1| rRNA methylase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690746|ref|YP_004220316.1| rRNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|227213217|gb|EEI81089.1| TrmH family rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|291517171|emb|CBK70787.1| rRNA methylases [Bifidobacterium longum subsp. longum F8]
 gi|311774079|gb|ADQ03567.1| SpoU2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916747|gb|EFV38141.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455602|dbj|BAJ66224.1| putative rRNA methylase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460090|dbj|BAJ70710.1| putative rRNA methylase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 292

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 89/271 (32%), Gaps = 30/271 (11%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANL 87
           D  +  +   +++   +     + G  +V  A+      +  L      AL      ++ 
Sbjct: 14  DRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPRIISST 73

Query: 88  PHPFP---------VKTVPPQTIDKIVGKEAVHQGLALE-TAPLLSPTLDAVR-----NS 132
                         V       + +I       QG+A    A  +    D V       +
Sbjct: 74  LEKIVETSQDATIYVHYCTGDVMRRISPDA---QGIAAVGNAESMHAGADDVELGKNGRA 130

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             +     V DP N G ++R+A A  CD +I         +  + +S +G+L H+P + +
Sbjct: 131 PQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAM 190

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL----------EQEIKNDKIALILGAEGKGLRP 242
            +  +                    +            ++       A++ G E +GL P
Sbjct: 191 -STDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFGNEARGLEP 249

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   +  + + G  ++LN+  +AAV L
Sbjct: 250 DILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|319951639|ref|YP_004162906.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319420299|gb|ADV47408.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 235

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 69/148 (46%), Gaps = 5/148 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186
           A R +++ + ++ V   HN  A++RS   F   +  +  ++Y     + +   A G+ + 
Sbjct: 46  AERTNKITVAVEDVFQMHNTSAVVRSCDIFGIQEAHLIERKYGDQLDSQI---AMGSQKW 102

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQ 245
           +   R  +  + +  +   G++ I  +  +   L ++ +   KIAL  G E  GL  +  
Sbjct: 103 VDIHRYESTKNCMDTLKQNGYKIIATTPHNDSCLLEDFEIEGKIALFFGTERNGLSEEVL 162

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + A     + M G  ++LN+S +AA+ L
Sbjct: 163 KNADGFLKIPMVGFTESLNISVSAAIIL 190


>gi|291514391|emb|CBK63601.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 243

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 4/149 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R   + ++ +++    N  A++R   AF    + T +   P E       A G  + +
Sbjct: 49  SMRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCPFEPNP--DIARGTHQWV 106

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              R ++  +A+  +   G++ +  +       P   ++     AL+ G E  G+  +  
Sbjct: 107 DVRRHASTGEAVAALKGAGYRIVATTPHREDATPETFDVGRGPFALVFGTEHAGISDEVI 166

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +A     + M G++++LNVS +AA+ +Y
Sbjct: 167 ASADEFLRIPMCGMVESLNVSASAAILIY 195


>gi|218681117|ref|ZP_03529014.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium etli CIAT 894]
          Length = 347

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 1/152 (0%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            +  LDA+    L++V   +++  N G++ R+A AF  D ++  +           + + 
Sbjct: 115 EAALLDALPERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETCCDPLYRKALRVSV 174

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G++  +PY R     D L  +   GF    LS   +  +     + ++AL++G EG+GL 
Sbjct: 175 GSVLSVPYRRGGKALDVLLALAERGFAIWTLSPHGETDIRAIPASARMALVVGTEGEGLP 234

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                     A +     + +LN + A  +A 
Sbjct: 235 EALLARF-QSARIPQSEELDSLNAATATGIAF 265


>gi|23465637|ref|NP_696240.1| rRNA methylase [Bifidobacterium longum NCC2705]
 gi|23326310|gb|AAN24876.1| possible rRNA methylase [Bifidobacterium longum NCC2705]
          Length = 294

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 89/271 (32%), Gaps = 30/271 (11%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANL 87
           D  +  +   +++   +     + G  +V  A+      +  L      AL      ++ 
Sbjct: 16  DRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPRIISST 75

Query: 88  PHPFP---------VKTVPPQTIDKIVGKEAVHQGLALE-TAPLLSPTLDAVR-----NS 132
                         V       + +I       QG+A    A  +    D V       +
Sbjct: 76  LEKIVETSQDATIYVHYCTGDVMRRISPDA---QGIAAVGNAESMHAGADDVELGKNGRA 132

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             +     V DP N G ++R+A A  CD +I         +  + +S +G+L H+P + +
Sbjct: 133 PQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAM 192

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPL----------EQEIKNDKIALILGAEGKGLRP 242
            +  +                    +            ++       A++ G E +GL P
Sbjct: 193 -STDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKAVLFGNEARGLEP 251

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   +  + + G  ++LN+  +AAV L
Sbjct: 252 DILTRCGRIVSIPLYGKAESLNLGTSAAVML 282


>gi|312130425|ref|YP_003997765.1| tRNA/rRNA methyltransferase (spou) [Leadbetterella byssophila DSM
           17132]
 gi|311906971|gb|ADQ17412.1| tRNA/rRNA methyltransferase (SpoU) [Leadbetterella byssophila DSM
           17132]
          Length = 171

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 6/162 (3%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
               AV    L ++LD +    N+G+I R++  F    +      +      + K+A GA
Sbjct: 10  DEFKAVEKLNLDLILDDIRSMSNVGSIFRTSDGFRVGKLYLCGITATPPHREIEKTALGA 69

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGL 240
              + +    +    ++ +   G++ + L         Q    IK+ K ALILG E  G+
Sbjct: 70  TASVDWEYKEDALALVRALKQAGYKILALEQADNSTYLQNFRPIKDQKYALILGNEVFGV 129

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +    A  +  +   G   + NVS +A + L+   ++FAK
Sbjct: 130 NEELIAEADEVIEIPQFGTKHSFNVSVSAGMFLW---DYFAK 168


>gi|329954919|ref|ZP_08295936.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
 gi|328527023|gb|EGF54034.1| RNA methyltransferase, TrmH family [Bacteroides clarus YIT 12056]
          Length = 253

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 16/256 (6%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++S   K ++    +     G   V   L     +   L+AT   L+     +    
Sbjct: 8   IKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATAEWLSAHKHLSVE-- 62

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +  V  + + +    +   Q LA+   P  +     + +  L + LD V DP N+G 
Sbjct: 63  --DITEVSEEELSRASLLKTPQQVLAVFEQPEEAMDASVI-SRSLCLALDDVQDPGNLGT 119

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F  + I  +       +    ++  G +  +     ++L + +  +       
Sbjct: 120 IIRLADWFGIEHIFCSPNTVDVYNPKTVQATMGGIARVKLHY-TSLPELIGSLKD--IPV 176

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNV 265
            G   D      Q +    + +++G EG G+  + ++      ++          ++LNV
Sbjct: 177 YGTFLDGANMYTQPLSAHGL-IVMGNEGNGIGNEVEQLINRKLYIPNYPSERETSESLNV 235

Query: 266 SNAAAVALYITQNHFA 281
           + A AV     +   A
Sbjct: 236 AIATAVVCAEFRRQAA 251


>gi|260582311|ref|ZP_05850104.1| rRNA methylase [Haemophilus influenzae NT127]
 gi|260094679|gb|EEW78574.1| rRNA methylase [Haemophilus influenzae NT127]
          Length = 351

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A        I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERPESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    H      V  + + ++ G E  H G+ L         L   LD  RN   L++LD
Sbjct: 155 SYLAEHKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRVFTLQGYLDIPRNEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   SA   + A G  E+I  +   ++  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSAASMRVAEGGSEYIRVLETDDIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q + +S + +  PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 273 MHLRKSGYQVMHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|291515298|emb|CBK64508.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 251

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 19/255 (7%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           D + +++   K R  ++       G   +   L      + ++ + +             
Sbjct: 5   DIQLVRALADK-RGRTEHGLFVAEGEKLIGE-LRASHLSVRRIFSLEGVF---------- 52

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           +   V+TV P+ ++++   +     LAL   P      + +R  +L + LD V +P N+G
Sbjct: 53  NGPEVETVAPRDMERLSQLKTPSNSLALVEIPRCDLKPERLRG-RLTLALDDVQNPGNLG 111

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            I+R A  F    I+ ++  +   +  + ++  GA+  +     ++L   L K  + G  
Sbjct: 112 TIIRLADWFGITDIVCSEASADCFNPKVVQATMGAILRVRVHY-TDLAALLSKAAALGLP 170

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM----PGIIKALN 264
             G   +     E E+K   I  ++G EG+G+      T T    +          ++LN
Sbjct: 171 VCGTFLEGANIYETELKPAGIV-VMGNEGRGITDAVARTVTQKLFIPPWPADRRGSESLN 229

Query: 265 VSNAAAVALYITQNH 279
           V+ A  +     +  
Sbjct: 230 VAMATGIVCGEFRRQ 244


>gi|213962459|ref|ZP_03390721.1| SpoU protein [Capnocytophaga sputigena Capno]
 gi|213954785|gb|EEB66105.1| SpoU protein [Capnocytophaga sputigena Capno]
          Length = 220

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +   + ++ V   HN  A++R+   F      + +        + AK A GA + +  
Sbjct: 28  RTNHFTVAMEDVFQMHNTSAVVRTCEVFGVQQAHSIEGR--FGKRLDAKIAMGAQKWVDV 85

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R ++    +  + + G+Q +  +       L       K A   G E +GL  +    A
Sbjct: 86  FRYNDTQSCIDTLRTQGYQIVATTPHKNAYFLNDFDITKKSAFFFGTEKEGLSAQVLSQA 145

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
            +   + M G  ++LN+S A A+ L
Sbjct: 146 DTFLKIPMVGFTESLNISVAVAIVL 170


>gi|308235806|ref|ZP_07666543.1| rRNA methylase [Gardnerella vaginalis ATCC 14018]
 gi|311114467|ref|YP_003985688.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
 gi|310945961|gb|ADP38665.1| TrmH family rRNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 321

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 104/287 (36%), Gaps = 57/287 (19%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD----ANLPHPFPVKTVP 97
            +       + G  +V  A+    + I  +   ++A+     D     NL +   ++   
Sbjct: 25  KSRVDGRFLVEGPQSVREAVRYAHKSILDIYVLQDAVNSDYIDVNSFKNLKNGI-LQNGS 83

Query: 98  PQTIDKIVGK-------------EAVH------QGLAL----------ETAPLLSPTLDA 128
            +TI KIV +             E +H      QG+                  S  +++
Sbjct: 84  LETISKIVDESLKNQCYVHPATAEVMHKISTDCQGIVAVCDSTILDKEFIKEFNSIGVES 143

Query: 129 VRNSQ------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              S       L+     V DP N GAI+R A    C  ++         ++ L +S +G
Sbjct: 144 KYKSGFAYDPILIAACWQVRDPGNAGAIIRVADVAGCSAVVFVDDCVNRFNSKLVRSTAG 203

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKI---------- 229
           +L H+P + +S   D      S   + I      +++KKP         +          
Sbjct: 204 SLFHLPVVTMSE-DDWFDWTKSLKIRVIAADIYGTENKKPKSFANLLKPLSDDLNKGYNE 262

Query: 230 ---ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A++ G E +GL  +       ++ + + G  +++N++ +AAV L
Sbjct: 263 GSNAILFGNEARGLPEEILNRVDEISVIPIYGKAESMNLATSAAVML 309


>gi|238061560|ref|ZP_04606269.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237883371|gb|EEP72199.1| rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 299

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 94/231 (40%), Gaps = 12/231 (5%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            + G+            +  ++   + + L      A      PV+ V    ++ +   +
Sbjct: 40  LVEGIRA--------GLEFIEVYGVETSPLPGEVLAACQQRDIPVRLVGSPIMNDLFKTD 91

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-R 167
              +   +   P      +  R +  ++VLD V    NIGAI+R++ A    GI+     
Sbjct: 92  KKPKAFGIARVPRPWSFDELARTTGDIIVLDGVKIVGNIGAIVRTSFALGAAGIVLVDSD 151

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKN 226
            +      L +++ G +  +P + +++  DA+      G   +   ++    + +    +
Sbjct: 152 LATIADRRLVRASRGYVFSLPIV-LASRADAIAHFRRTGIPLVAFDTEGDLAVSELRDAD 210

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +++AL+LG+E  G     +  A+    + +    ++LNVS  A +ALY  +
Sbjct: 211 EQLALLLGSEKTGTSRSFESIASHSVSIPINPAAESLNVSVCAGIALYERR 261


>gi|317504477|ref|ZP_07962455.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
 gi|315664420|gb|EFV04109.1| SpoU family RNA methylase [Prevotella salivae DSM 15606]
          Length = 183

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L        +   L++VLD V   +N+G++ RS  AF  +GI      +   +A 
Sbjct: 10  IEMNRLSINEFKEAKKLPLVVVLDDVRSLYNVGSVFRSGDAFRIEGIYLCGITATPPNAE 69

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI------ 229
           + K+A G  + + +   S   DA+ ++ S  +    +         Q++  DK       
Sbjct: 70  IHKTALGGEDSVAWRYFSRAEDAVTELQSHDYFVYSIEQVEGSIKLQDLTIDKTSQAKGY 129

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A++ G E KG++ +    +     +   G   +LNVS  A + ++      
Sbjct: 130 AVVFGNEVKGVKQEVVNMSDGCLEIPQFGTKHSLNVSTTAGIVMWEFTRKL 180


>gi|221134031|ref|ZP_03560336.1| rRNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 251

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 102/257 (39%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF----QLLATKNALARLDWDAN 86
           KK+     + ++ ++  +  L G H +   +    R+       L  +   +    W  +
Sbjct: 7   KKLH----QKKYRAEFGHYLLEGEHLILELVKASERQPHLLKSILYVSPEYVQ---WAHD 59

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLA---LETAPLLSPTLDAVRNSQLLMVLDHVND 143
           LP  F V  +  + ++ I   +     +A   LE+   L+       +SQ  + L  V D
Sbjct: 60  LPISFNVIELTTKQMNNISDTKTPPGIIACVPLESTDQLTTNTTTSADSQRYVYLHEVQD 119

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I+R+   F    ++ +       +A + +++ GAL ++P  +  +L    ++  
Sbjct: 120 PGNLGTIIRTLAWFGDVTLLLSPNSVDPFNAKVVRASMGALFYVPIEQDISLAQLNERFD 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HLHMPGIIKA 262
            + +    L  + +       K      + G E +G+         + A  +   G I++
Sbjct: 180 EFAY----LDMNGESIAATSFKTMP-CYVFGNEARGVPRDALTQMPATAFTIKGAGNIES 234

Query: 263 LNVSNAAAVALYITQNH 279
           LN+++A  + +Y     
Sbjct: 235 LNLASAVNMCMYELMGR 251


>gi|295135563|ref|YP_003586239.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294983578|gb|ADF54043.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 189

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 3/154 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                 R + ++++LD++   +NIG++ R+A AF  + +      +      + K+A GA
Sbjct: 17  EEFKEARKTPIIVILDNIRSLNNIGSVFRTADAFLIEKVYLCGITAKPPHKDIQKTALGA 76

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEGKGL 240
            E + +  + +  D ++K+     +   +  ++    L        +KIA+I G E KG+
Sbjct: 77  TETVVWEHVEDTLDLVEKLKEDNIKVFSIEQAEGAVMLNNFKPEIGEKIAVIFGNEVKGV 136

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + K    +  +  +   G   +LN+S +  V L+
Sbjct: 137 QQKVVSASDGVIEIPQAGSKHSLNISVSTGVILW 170


>gi|153007162|ref|YP_001381487.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152030735|gb|ABS28503.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 239

 Score =  137 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 5/156 (3%)

Query: 120 PLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           P     +DAV   R   L +V++   DP N+ A+LR+  AF    +   +          
Sbjct: 28  PERRARIDAVVANRTRTLTVVMEAFCDPQNVNAVLRTCEAFGIQELHVIEGPMKPYDRN- 86

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGA 235
            K +  A + +   R S+  + L  + + GF        +  + L+      K+AL+ G 
Sbjct: 87  KKISQNADKWVDVRRWSSTGECLAHLKAEGFAIYATHLGEGARTLDALSFAGKVALVFGN 146

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           E +G+  +    + ++  + M G +++LNVS AAA+
Sbjct: 147 EHRGVSDEAVALSDAVYVIPMHGFVQSLNVSVAAAI 182


>gi|268316849|ref|YP_003290568.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
 gi|262334383|gb|ACY48180.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
          Length = 200

 Score =  137 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 2/168 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E       TL  +    +++VLD++   +N+G+I R++ A   + +  T      E   L
Sbjct: 8   EIPRPDPETLRRLPRHPIVVVLDNIRSIYNVGSIFRTSDAARIEKLYLTGITGTPEHRQL 67

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILG 234
            K+A GA E +P+  + +    +  +   G+    L          ++ +D   +ALI+G
Sbjct: 68  HKTALGAEETVPWEYVRDPVPLVASLRKAGYTIAALELTDTPTYTHQLPDDIFPLALIVG 127

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G++P   E A     +   G  ++LNV+ A  +A++    H+ +
Sbjct: 128 HELYGVQPALIERADLALEIPQFGSKQSLNVAVAYGIAVFDLVRHYRR 175


>gi|150024500|ref|YP_001295326.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771041|emb|CAL42508.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 182

 Score =  137 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 3/153 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  + +++VLD +   HNIG++ R+A AF  + I      +   +  + K+A GA 
Sbjct: 16  DFKEAEKTPIVIVLDDIRSLHNIGSVFRTADAFLIEKIYLCGITATPPNKEIHKTALGAT 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLR 241
           E + +    N+ + ++ +         +          + K     K ALI G E  G+ 
Sbjct: 76  ETVVWEHHENVLEVIENLKKDEISVFAIEQVENAIFLNDFKVEATKKYALIFGNEVFGVN 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +          +   G   +LN+S +  + ++
Sbjct: 136 QEAIRLCDGTIEIPQLGTKHSLNISVSTGIVVW 168


>gi|325859781|ref|ZP_08172911.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
 gi|325482707|gb|EGC85710.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
          Length = 205

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 31/196 (15%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L            L++VLD V   +N+G++ RSA AF  + I      +   +A 
Sbjct: 7   VEMDRLSVEEFREAEKLPLIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI---------- 224
           + K+A G  + + +       +A++++H  G     +  ++    L+             
Sbjct: 67  IHKTALGGEDSVAWRYFERTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDIHLLTSAPRE 126

Query: 225 --------------------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                                + + AL++G E KG++    + +     +   G   +LN
Sbjct: 127 MEQDCPAADTSHSILPLHPKPDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLN 186

Query: 265 VSNAAAVALYITQNHF 280
           VS  A + ++      
Sbjct: 187 VSVTAGIVIWEFARRL 202


>gi|329962850|ref|ZP_08300735.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
 gi|328529407|gb|EGF56320.1| RNA methyltransferase, TrmH family [Bacteroides fluxus YIT 12057]
          Length = 253

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 84/246 (34%), Gaps = 15/246 (6%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQ 99
            ++    +     G   V   L         L+AT   L++            V  V  +
Sbjct: 17  KKNRKADKVFLAEGPKLVGDLL--GHFPCCFLVATSEWLSQNHHLPL----TDVTEVSEE 70

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
            + +    +   Q LA+   P        +    L + LD V DP N+G I+R A  F  
Sbjct: 71  ELSRASLLKTPQQVLAVFKQPEDETDASVI-GRSLCLALDDVQDPGNLGTIIRLADWFGI 129

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           + I  +     + +    ++  G +  +       L   +  +        G   D +  
Sbjct: 130 EHIFCSPNTVDAYNPKTVQATMGGIARVKLHYTP-LPALIGSLTD--IPVYGTFLDGENI 186

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----IIKALNVSNAAAVALYI 275
             Q +  + + +++G EG G+  + ++      ++          ++LNV+ A AV    
Sbjct: 187 YGQPLSENGL-IVMGNEGNGIGEEVRQLINRKLYIPNYPANRETSESLNVAIATAVVCAE 245

Query: 276 TQNHFA 281
            +   A
Sbjct: 246 FRRQAA 251


>gi|86142740|ref|ZP_01061179.1| spoU protein [Leeuwenhoekiella blandensis MED217]
 gi|85830772|gb|EAQ49230.1| spoU protein [Leeuwenhoekiella blandensis MED217]
          Length = 217

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 4/158 (2%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               L    LD  R   L + ++ V   HN  A++RS  AF    I   +        + 
Sbjct: 16  RRQDLFKQVLDE-RTRFLTVAIEDVGHLHNTSAVMRSCDAFGVQDIHVIEE--LKGKRID 72

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGA 235
            + A GA +     R  +  +AL K+ S G+Q +  +   +   LE    +   AL  G+
Sbjct: 73  REIAMGAQKWTSVKRYDSTKNALAKLKSEGYQIVATTPHHTAHKLEDFKLDKPTALFFGS 132

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  GL     E A    ++   G  ++LN+S  AA+ L
Sbjct: 133 EKDGLTETVIEAADEYIYIPTFGFTQSLNISVCAAILL 170


>gi|301165389|emb|CBW24960.1| putative SpoU-like rRNA methylase [Bacteriovorax marinus SJ]
          Length = 256

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 101/230 (43%), Gaps = 5/230 (2%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
           N  +     V   L N + ++ +L    + + R     +      + T   + + +I+G 
Sbjct: 29  NTIIVETEKVVLKLLNSNTEVIKLFVNPDFIDRHSELLS-KLSIDIYTADKEVMQEIIGH 87

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
              H  +AL   P    +LD +++   +++L+ +  P NIG I+R+  AF+ + II  KR
Sbjct: 88  NLHHGVMALARRP-EYISLDELQDK--VLILNGLTSPENIGTIVRNCAAFNINSIIIDKR 144

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN 226
                     + + G +  +   + ++L   L+K+ S G + I  +  +    L +    
Sbjct: 145 TCSPYVRRCIRVSMGNIFRVKVYKSNDLKSDLKKLQSLGHRVISTANQEGAIDLPKYSFP 204

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            K  +I+G+EG G+     E +  +  + +   +  LN + ++++ LY  
Sbjct: 205 KKSCVIIGSEGHGIEKDILEVSDDIIRIPIDDTVAHLNAACSSSIFLYQL 254


>gi|52424303|ref|YP_087440.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306355|gb|AAU36855.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 369

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 13/240 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVK-TVPPQ 99
             ++ E + +YG     A        I ++ AT     ++ D  + L     V   V   
Sbjct: 130 KKNRAEEMKVYGESACLALFAERPESIVRVWATVEMAHKIGDMFSYLAANKKVYHVVERA 189

Query: 100 TIDKIVGKEAVHQGLAL---ETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            ++ + G E  H G+ +   +  P  L+  LD  R    L++LD+V +P NIG I+R+  
Sbjct: 190 ELELVSGTE-HHGGICMLVKKARPFTLTGYLDIPRQQDALIILDNVRNPQNIGGIIRTCA 248

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            +   G+I         SA   + A G +E+I  ++  +  DAL K+   G+Q +  +++
Sbjct: 249 FYGVKGVIVDNAE-LLNSAAAMRVAEGGMEYIHQLQTESPDDALAKLRKAGYQVVHTTTN 307

Query: 216 S-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273
              K + +     K+  +L  E +   P   ++   + +L     +K  LNV+ AA V L
Sbjct: 308 KQAKGVHKLQLAKKVVFVL-TESE--NPALVQSGDEVINLSFANPLKTGLNVAVAAGVLL 364


>gi|145628790|ref|ZP_01784590.1| rRNA methylase [Haemophilus influenzae 22.1-21]
 gi|144979260|gb|EDJ88946.1| rRNA methylase [Haemophilus influenzae 22.1-21]
          Length = 268

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A     +  I +L AT     ++    
Sbjct: 12  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVL 71

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD  RN   L++LD
Sbjct: 72  SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLD 130

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   S    + A G  E+I  +   ++  AL
Sbjct: 131 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSGASMRVAEGGAEYIRVLETDDIDSAL 189

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I +S + +  PL++    +K+  +L +E      ++  T+  +   L + 
Sbjct: 190 MHLRKSGYQIIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATSEDTQVRLTLA 245

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 246 SPIKSGLNIAVNAGVLL 262


>gi|261878944|ref|ZP_06005371.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
 gi|270334454|gb|EFA45240.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
          Length = 206

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 30/193 (15%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L            L++VLD V   +N+G++ R+  AF  + +          +A 
Sbjct: 7   IEMQRLSVEEFKDAPKLPLIVVLDDVRSLYNVGSVFRTCDAFRVEAVYLCGITGTPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-----------SDSKKPLEQEI 224
           + K+A G  + + +       DA+Q++H  G+    +             +SK  +    
Sbjct: 67  IHKTALGGEDSVDWRYFEKTEDAVQELHDRGYFVYSIEQVEGSTKLFELGNSKFTIHNSK 126

Query: 225 KND---------------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             D                 A+I G E KG++    + +     +   G   +LNVS  A
Sbjct: 127 LADAVDTAIENRQSESIFPCAVIFGNEVKGVKQSVVDMSDGCLEIPQFGTKHSLNVSVTA 186

Query: 270 AVALYITQNHFAK 282
            + ++     FAK
Sbjct: 187 GIVVWE----FAK 195


>gi|323345715|ref|ZP_08085938.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269]
 gi|323093829|gb|EFZ36407.1| TrmH family RNA methyltransferase [Prevotella oralis ATCC 33269]
          Length = 257

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 13/254 (5%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++S  QK ++          G   VS  L      +F     +       W      
Sbjct: 7   IKYIRSLEQK-KNRRNEGVFVAEGPKIVSDFLKT-QTAVFIACTARWKAENTYWQCLETT 64

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
              +  V  + + KI       Q +        + T+ A    +L + LD + DP N+G 
Sbjct: 65  ETAI--VTDEELKKI-SFLQHPQEVLAVFRQAENKTI-APDVRRLYLALDGIQDPGNLGT 120

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R A  F  + I  +   +   +    +++ G+L HI     +++   +  + +  +  
Sbjct: 121 IIRIADWFGIEHIYCSIDTADIYNPKTVQASMGSLAHIGISY-TDIPLLIDSLPT-DYPI 178

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI----IKALNV 265
            G   D K    + +    + LI+G EG G+    +   +    +           +LNV
Sbjct: 179 YGTLLDGKDIYNEPLTPHGL-LIMGNEGNGISAPVKSRISRRLLIPNYPQGRKTADSLNV 237

Query: 266 SNAAAVALYITQNH 279
           + A A+A    +  
Sbjct: 238 AIATAIACSEFRRR 251


>gi|82915128|ref|XP_728972.1| rRNA methylase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485711|gb|EAA20537.1| rRNA methylase [Plasmodium yoelii yoelii]
          Length = 361

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/339 (19%), Positives = 132/339 (38%), Gaps = 67/339 (19%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRH-------------TSQPENLFLYGV 54
           K++   S  +     + RN + YK +  +N + ++              ++ +  ++YG+
Sbjct: 23  KNDHNISRTNLDRVSIPRNKKKYKLLNLYNDRKKNILXNIKRNSFLDIQNKNDIDYIYGL 82

Query: 55  HTVSAALNNPSRKIFQLLATKNAL-------ARLDWDANLPHPFPVKTV--PPQTIDKIV 105
           ++V + L    RKI + +  KNA           D+  N      ++ V      +D++V
Sbjct: 83  NSVYSVLKKNERKIDKAIINKNAKRNKKIHKEAYDYILNTIKEKNIQIVYKTKNEMDELV 142

Query: 106 GKEAVHQGLALETAPLLSP------------TLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
           G    H  + +E                     +   N+ + + L +V D  N+G I RS
Sbjct: 143 G-GFPHNDIIIEATYRYMKNYRHFINNKKTTNNNNNNNNNIFICLHNVYDNMNVGNICRS 201

Query: 154 AVAFSCDGIITTKRYSPSESAVLAK-------SASGALEHIPYIRISNLTDALQKMHSWG 206
            + F  D I   ++    E     K       S+ GA E++ +  ++N+ + +  +   G
Sbjct: 202 ILFFGGDSIFLKRKKKKGEHKNYIKIDTPILHSSVGASEYLNFFHVNNMENFISSLKEKG 261

Query: 207 FQTIGLSSDSKKPLE---------QEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-- 255
           F  +  SS                +  KN+K+ +ILG E KGL     + +    +++  
Sbjct: 262 FTILSTSSPKNNTRMTNFVELKNMKINKNEKVMIILGNESKGLSEDIIKNSDICIYINNL 321

Query: 256 ------MPG--------IIKALNVSNAAAVALYITQNHF 280
                  P         I+ +LNV+N  ++ L+  Q++ 
Sbjct: 322 YDEKNIQPNLKNINDNLIVNSLNVNNVCSIILHHFQSNI 360


>gi|327312806|ref|YP_004328243.1| TrmH family RNA methyltransferase [Prevotella denticola F0289]
 gi|326945589|gb|AEA21474.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289]
          Length = 205

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 31/196 (15%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L            L++VLD V   +N+G++ RSA AF  + I      +   +A 
Sbjct: 7   VEMDRLSVEEFREAEKLPLIVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK--------- 225
           + K+A G  + + +       +A++++H  G     +  ++    L+             
Sbjct: 67  IHKTALGGEDSVAWRYFERTEEAVEELHRKGVFVYSVEQAEGSTKLQDLDTRLLTSAPRE 126

Query: 226 ---------------------NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                                + + AL++G E KG++    + +     +   G   +LN
Sbjct: 127 MEQDCPAADTSHPTHPLHPRHDTRYALVMGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLN 186

Query: 265 VSNAAAVALYITQNHF 280
           VS  A + ++      
Sbjct: 187 VSVTAGIVIWEFARRL 202


>gi|86141816|ref|ZP_01060340.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
 gi|85831379|gb|EAQ49835.1| tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis MED217]
          Length = 179

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+ + L   ++D  + +    +++VLD+V   +NIG++ R+A AF  + I      +   
Sbjct: 5   LKNSELDRKSVDEFKTAAKTPIVVVLDNVRSLNNIGSVFRTADAFLIEAIYLCGICAQPP 64

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKI 229
              +AK+A GA E + +    N  DA+  +   GF    +    K  +    +       
Sbjct: 65  HKDIAKTALGATESVNWKYFENTLDAVDALKKEGFTIASVEQAEKAVMLNDFEVNAETSY 124

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A+I G E KG++ K  + +  +  +   G   + N+S +  + L+
Sbjct: 125 AIIFGNEVKGVKQKVVDASDIVLEIPQVGTKHSFNISVSVGIVLW 169


>gi|282907859|ref|ZP_06315694.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282328243|gb|EFB58521.1| tRNA/rRNA methyltransferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
          Length = 110

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 55/102 (53%)

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           AK+++GA+EH+P IR++NL   + ++   GF   G  +++         +  +A+++G+E
Sbjct: 1   AKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGTEANNATDYRNLEADMSLAIVIGSE 60

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G+G+     +       + M G + +LN S AA++ +Y    
Sbjct: 61  GQGMSRLVSDKCDFYIKIPMVGHVNSLNASVAASLMMYEVFR 102


>gi|298209194|ref|YP_003717373.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849121|gb|EAP86990.1| SpoU rRNA methylase family protein [Croceibacter atlanticus
           HTCC2559]
          Length = 171

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 3/147 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              +++VLD +  P N+G+I R A AF    I+  +      S+   ++A      +P  
Sbjct: 15  QFPIVLVLDQLTSPANLGSIFRLADAFGITKIVQYRCDIDMNSSRFKRTARTTNTTVPSE 74

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET 247
           RI +++  +  + S G+ TI L  +DS KP++    +   K+ LI+G+E KG+  +  + 
Sbjct: 75  RIDDISSYITSLKSDGYTTIALEITDSSKPIDAIPLSSENKLILIIGSERKGVSEQLLKH 134

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
                H+ M G   ++NV+ A  +AL+
Sbjct: 135 CDFATHITMFGKNSSMNVAQATGIALF 161


>gi|83815313|ref|YP_445016.1| rRNA methylase [Salinibacter ruber DSM 13855]
 gi|83756707|gb|ABC44820.1| rRNA methylase [Salinibacter ruber DSM 13855]
          Length = 247

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 5/178 (2%)

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           ++IVG    H     E       T+ A R   ++ V++ + +  N+ A++RSA A     
Sbjct: 28  ERIVGLLRPH---MRERRLDRIQTVVANRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQD 84

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PL 220
           +               ++A GA   +        T     +   G++ + +   +   P+
Sbjct: 85  MHVVSGEHD-RYKHSQRTAQGAQHWLDVWHWDAPTACATHLQDAGYRVVAMHLHADTVPI 143

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    AL+ G E  G+     E + +   + +PG  ++ NVS AAAVALY  Q 
Sbjct: 144 RDLDFTQPTALVFGNEDAGVTDTMLEASDAACEVPLPGFTESFNVSVAAAVALYHAQQ 201


>gi|325268414|ref|ZP_08135046.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
 gi|324989268|gb|EGC21219.1| SpoU family RNA methylase [Prevotella multiformis DSM 16608]
          Length = 191

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +E   L            L +VLD V   +N+G++ RSA AF  + I      +   +A 
Sbjct: 7   IEMNRLSIEEFKEADKLPLTVVLDDVRSLYNVGSVFRSADAFRVEAIYLCGITATPPNAE 66

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDK------ 228
           + K+A G  + + +   ++  +A++++H  G     +   +    L+             
Sbjct: 67  IHKTALGGEDSVAWRYFAHTEEAVEELHRRGVFVYSVEQVEGSTKLQDLTPRLPAVSREE 126

Query: 229 ----------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                      ALILG E KG++    + +     +   G   +LNVS  A + ++    
Sbjct: 127 GENSPAGDRHYALILGNEVKGVKQTVVDMSDGCLEIPQFGTKHSLNVSVTAGIVIWEFAR 186

Query: 279 HF 280
             
Sbjct: 187 RL 188


>gi|294506881|ref|YP_003570939.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
           M8]
 gi|294343209|emb|CBH23987.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salinibacter ruber
           M8]
          Length = 258

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 5/178 (2%)

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           ++IVG    H     E       T+ A R   ++ V++ + +  N+ A++RSA A     
Sbjct: 39  ERIVGLLRPH---MRERRLDRIQTVVANRTRSVVPVVEGLVNTGNVSAVMRSAEALGHQD 95

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PL 220
           +               ++A GA   +        T     +   G++ + +   +   P+
Sbjct: 96  MHVVSGEHD-RYKHSQRTAQGAQHWLDVWHWDAPTACATHLQDAGYRVVAMHLHADTVPI 154

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                    AL+ G E  G+     E + +   + +PG  ++ NVS AAAVALY  Q 
Sbjct: 155 RDLDFTQPTALVFGNEDAGVTDTMLEASDAACEVPLPGFTESFNVSVAAAVALYHAQQ 212


>gi|160358744|sp|A1L2E4|RML1B_DANRE RecName: Full=RNA methyltransferase-like protein 1B
          Length = 445

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 107/345 (31%), Gaps = 72/345 (20%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +I+     +   +    Y KL    +   K+       +       + L G H V +AL
Sbjct: 99  KVINLTSRTRFGEVDGLLYEKLHPGDKSLAKLARIAGSKKLR--EHQVVLEGKHLVCSAL 156

Query: 62  NNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---- 116
           +  +       ++ +AL  L  D     +   VK    Q   ++       Q +      
Sbjct: 157 DAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMEDAQVWSEL----DTSQEIIAIFKR 212

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E + L        R   L ++ D V DP N+G++LRSA A  C  ++ TK         
Sbjct: 213 PEASRLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELK 272

Query: 176 LAKSASGALEHIPYIRISNLTDALQKM--------------------------------- 202
           + ++A GA   +P I     TD    +                                 
Sbjct: 273 VLRAAMGAHFRLPIIPNLTWTDISNHLPKTSTVHVADNHSTTMGKHNDNTTPQKHRRPSD 332

Query: 203 ----HSWGFQTIGLSSDSKKPL---------------EQEIKNDKIA----LILGAEGKG 239
                   +Q+     D    L                Q    D +A    LI+G E  G
Sbjct: 333 YGWVKGHQYQSKAHDDDDANDLCSLEDYCDENSKSLETQLYYTDWVAGHTSLIIGGETHG 392

Query: 240 LRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L  +  + A         + M   + +LN + AA V L+  +   
Sbjct: 393 LSREALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFEGRKQL 437


>gi|332520835|ref|ZP_08397295.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043365|gb|EGI79561.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 220

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 3/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     +  + V   HN  A++RS   F    +   +  +     +  + A GA + +  
Sbjct: 29  RTKHFTVATEDVYQLHNTSAVIRSCDVFGIQEVNIVEEVNA--KRIDREIAMGAQKWVDL 86

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            R   + DA+Q +   G+Q +  +  +    L       K     G E +GL  +  + A
Sbjct: 87  NRYHTVKDAIQDVKQKGYQVVATTPHANDCNLRDFDVTKKSCFFFGRETEGLSQEVLDEA 146

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL 273
                + M G  ++LN+S +AA+ L
Sbjct: 147 DVFLKIPMVGFTESLNISVSAAIIL 171


>gi|325847687|ref|ZP_08170010.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480899|gb|EGC83951.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 243

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 115/280 (41%), Gaps = 40/280 (14%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           +I  + +EK   +      K R+  + +  ++S     +     E  F++    V+  + 
Sbjct: 2   IIKSESNEKYKYINKLKKKKYRKKFKSFI-VESIKIVDQIPEDFECEFVF----VNEDMK 56

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
           +      +++ + N   +L    N                         +G++       
Sbjct: 57  DYKTDFKKIVFSNNLFDKLSLLEN------------------------PEGVSAVIKMKD 92

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              + + +    +++LDH+ DP N+G I+RSA AFS   II         +    +++ G
Sbjct: 93  KKEISSKK----VLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMG 148

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           ++  + +I +    + ++ + +  ++ I    D  K ++     DKI L +G E  G+  
Sbjct: 149 SIFRLNFIDLE--LEDVKDLINKDYKLILADMDG-KSVDYFKSCDKIILAIGNEANGISK 205

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             ++ +     + M G I++LN + AA++ +    N+F++
Sbjct: 206 SLKDLSDDFVSIKMDGEIESLNAAIAASILM----NNFSQ 241


>gi|145353351|ref|XP_001420979.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357416|ref|XP_001422915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581215|gb|ABO99272.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583159|gb|ABP01274.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 216

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFS--CDGIITTKRYSPSESAVLAKSASGALEHI 187
           R+  LL +L+ V D  NI A+ R+  A    C  I+++K  S   S    +++ GAL+  
Sbjct: 42  RSFSLLPILEGVYDVGNILAVCRTTEALGIGCASIVSSKGLSFKASG---RTSGGALKWQ 98

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +      AL+   + G++ +    D  +PL         A++ G E +G+  + +  
Sbjct: 99  HVEQFETSERALRVAKAKGYRVLTTEFDGAQPLSHYDWTVPTAVVFGNEREGVSDEARAL 158

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
                ++ M G  ++LN+S AAA+ +
Sbjct: 159 RDGAVYIPMFGFTESLNISVAAALVM 184


>gi|300772007|ref|ZP_07081877.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760310|gb|EFK57136.1| SpoU family RNA methylase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 177

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 121 LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           L  P ++  +      +++VLD+V   HN+G+  R++ AF+ + II            + 
Sbjct: 9   LQRPDVETFKKQSKIPVVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIE 68

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK--NDKIALILG 234
           K+A GA   + +    +L   LQK+ + G+Q + +  ++    L Q     + K A + G
Sbjct: 69  KTALGATSSVDWEHAPDLVSRLQKLKAEGYQILAIEQAEGSVMLHQFEPSSDQKYAFVFG 128

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
            E  G+  +  + +     +   G   + N+S    + L+  + +N F 
Sbjct: 129 NEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRFN 177


>gi|218131049|ref|ZP_03459853.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697]
 gi|217986753|gb|EEC53086.1| hypothetical protein BACEGG_02652 [Bacteroides eggerthii DSM 20697]
          Length = 253

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 93/259 (35%), Gaps = 22/259 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++S   K ++    +     G   V   L     +   L+AT   L+          
Sbjct: 8   IKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATAEWLS-------AHR 57

Query: 90  PFPVK---TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
             PV+    V  + +      +   Q LA+   P        V +S L + LD V DP N
Sbjct: 58  QLPVEDITEVSEKELSCASLLKTPQQVLAVFEQPDEVMDASVVAHS-LCLALDDVQDPGN 116

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F  + I  +     + +    ++  G +  +     ++L   +  +    
Sbjct: 117 LGTIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLHY-TSLPGLIGSLKD-- 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KA 262
               G   D +    Q +    + +++G EG G+  + ++      ++          ++
Sbjct: 174 IPVYGTFLDGENMYTQPLSAHGL-IVMGNEGNGIGNEVKQLINRKLYIPNYPSTRETSES 232

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ A AV     +   A
Sbjct: 233 LNVAIATAVVCAEFRRQAA 251


>gi|301169124|emb|CBW28721.1| predicted methyltransferase [Haemophilus influenzae 10810]
          Length = 351

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 106/257 (41%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A     +  I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD  RN   L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   S    + A G  E+I  +   ++  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSGASMRVAEGGAEYIRVLETDDIDSAL 272

Query: 200 QKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I  L +    PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 273 MHLRKSGYQIIHVLHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|325919147|ref|ZP_08181205.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
 gi|325550388|gb|EGD21184.1| rRNA methylase [Xanthomonas gardneri ATCC 19865]
          Length = 153

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 67/139 (48%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + LD V +PHN GAILRS+  F   G++     +   S   A+ A G  E +P +++ 
Sbjct: 2   LALWLDGVGNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLP 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +   A+ ++   GF      +D  + +       ++  ++GAE +G+  +          
Sbjct: 62  DTALAMAQLRQAGFAVAATLADGGEDVFAAALPQRLVYVMGAESEGMDRQFARDCDLQLS 121

Query: 254 LHMPGIIKALNVSNAAAVA 272
           +   G +++LNV++A AV 
Sbjct: 122 IRGSGKVESLNVASATAVF 140


>gi|308810773|ref|XP_003082695.1| CR004 protein (ISS) [Ostreococcus tauri]
 gi|116061164|emb|CAL56552.1| CR004 protein (ISS) [Ostreococcus tauri]
          Length = 308

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFS--CDGIITTKRYSPSESAVLAKSASGALE 185
           A R   LL V++ V D  N+ A+ RS  A    C  I+++K           +++ GAL+
Sbjct: 62  ANRTFDLLPVMEGVYDVGNMLAVCRSTEALGIGCAAIVSSKG---LNFKASGRTSGGALK 118

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                R  + T AL+   S G + +    +   P+         A++ G E  G+  + +
Sbjct: 119 WQRVERFDSTTAALRAAKSRGMRVLTTEFEGAYPMSHYDWTIPTAVVFGNEKTGVSEEAR 178

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL-YITQNHFAK 282
             +     + M G  ++LN+S AAA+ + +   +  A+
Sbjct: 179 AMSDGGVFIPMYGFTESLNISVAAALVMSHAVSDRIAR 216


>gi|120537815|gb|AAI29485.1| Rnmtl1-b protein [Danio rerio]
          Length = 448

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 107/345 (31%), Gaps = 72/345 (20%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +I+     +   +    Y KL    +   K+       +       + L G H V +AL
Sbjct: 102 KVINLTSRTRFGEVDGLLYEKLHPGDKSLAKLARIAGSKKLR--EHQVVLEGKHLVCSAL 159

Query: 62  NNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---- 116
           +  +       ++ +AL  L  D     +   VK    Q   ++       Q +      
Sbjct: 160 DAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMEDAQVWSEL----DTSQEIIAIFKR 215

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E + L        R   L ++ D V DP N+G++LRSA A  C  ++ TK         
Sbjct: 216 PEASRLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELK 275

Query: 176 LAKSASGALEHIPYIRISNLTDALQKM--------------------------------- 202
           + ++A GA   +P I     TD    +                                 
Sbjct: 276 VLRAAMGAHFRLPIIPNLTWTDISNHLPKTSTVHVADNHSTTMGKHNDNTTPQKHRRPSD 335

Query: 203 ----HSWGFQTIGLSSDSKKPL---------------EQEIKNDKIA----LILGAEGKG 239
                   +Q+     D    L                Q    D +A    LI+G E  G
Sbjct: 336 YGWVKGHQYQSKAHDDDDANDLCSLEDYCDENSKSLETQLYYTDWVAGHTSLIIGGETHG 395

Query: 240 LRPKTQETAT----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           L  +  + A         + M   + +LN + AA V L+  +   
Sbjct: 396 LSREALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFEGRKQL 440


>gi|225012277|ref|ZP_03702714.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225003832|gb|EEG41805.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 174

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L+  T+   + +    L+++LD++   +NIG++ R+A AF  + I      +   
Sbjct: 4   LKNEELIRKTIADFKQADKTPLILILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKI 229
              + K+A GA E++ +    N  + +QK+H        +    K       Q  KN + 
Sbjct: 64  HKDIHKTALGATENVAWEYAENTLEVVQKLHKENVSVWAIEQTEKAIFLDSFQPKKNTRH 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A ILG E +G+  +  +       +   G   +LN+S A  V ++   ++F K
Sbjct: 124 AFILGNEVRGVSQEAVDACGQALEIPQFGTKHSLNISVATGVVVW---DYFTK 173


>gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Oceanobacter sp. RED65]
 gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65]
          Length = 249

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 104/256 (40%), Gaps = 17/256 (6%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWD 84
           D KK+     + ++ ++     + G H +      A +NP+ +   +  +++    L+  
Sbjct: 5   DIKKLH----QKKYRNEYGCFLVEGEHLILELAKAAKHNPALQASTVYLSES-YGELEQS 59

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVND 143
           A          V  + + K+       QG+          T  A+  +++  + L  V D
Sbjct: 60  ALNGLSLKQVRVTDKQMQKMADT-KTPQGIVAVVPFNDERTQQAIASDNERTVYLYEVQD 118

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+   F     + +       +  + +++ GA+ H+P  +  ++ D   +  
Sbjct: 119 PGNLGTILRTLAWFGGFRCVLSPNSVDPYNPKVVRASMGAIFHVPIEQNISIDDMQNRFD 178

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIKA 262
            +      L  +  KPL  E  +++   I G E +G+   +  +  T+   +   G++++
Sbjct: 179 EF----ACLDING-KPLSSEGFSEQRCFIFGNEARGVPHEELSKLKTTAYSIQGAGVVES 233

Query: 263 LNVSNAAAVALYITQN 278
           LN++ A  +  Y    
Sbjct: 234 LNLATAVNMCAYELNR 249


>gi|90021648|ref|YP_527475.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
 gi|89951248|gb|ABD81263.1| tRNA (guanosine-2'-O-)-methyltransferase [Saccharophagus degradans
           2-40]
          Length = 224

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 11/156 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFS---CDGIITTKRYSPSESAVLAKSASGALEH 186
           R   L ++ + V    N+ AI+R+  A        ++  + ++ S +     +A+ A + 
Sbjct: 16  RQPDLTVITEEVQKGRNLSAIIRTCDAVGIPEVHSVVPREGFT-SYNG----TAASAHKW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +     S   + +  +   G+Q +    D + K   +       AL++GAE  G+    +
Sbjct: 71  VDIHHYSTALEPITALTQQGYQIVAAHVDRNAKDFREIDYTKPTALLMGAEIWGVSEPAR 130

Query: 246 ETATSMAHLHMPGIIKALNVSNA-AAVALYITQNHF 280
           E  T   HL M G+I++ NVS A A + L   Q   
Sbjct: 131 ELVTHTIHLPMVGMIESYNVSVACAGILL-EAQRQR 165


>gi|145630401|ref|ZP_01786182.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|144984136|gb|EDJ91573.1| rRNA methylase [Haemophilus influenzae R3021]
          Length = 351

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A     +  I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD  RN   L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   SA   + A G  E+I  +   ++  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSAASMRVAEGGAEYIRVLETDDIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I +S + +  PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 273 MHLRKSGYQVIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|219127773|ref|XP_002184103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404334|gb|EEC44281.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 389

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 17/208 (8%)

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---LSPTLDAVRNSQ------- 133
           +A       V       + +  G       LA    P     +  ++  R ++       
Sbjct: 172 EAAKRAKVHVMIGAENVLSEAAGFTISRGALACGFVPENRNFAWLMEYFRKTRMSGEGEL 231

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+ LD + D  N+G+++R A AF    ++ +K           + + G +  IP +R+ 
Sbjct: 232 RLLALDGICDTANLGSVVRCASAFGVHAVLLSKDCCDPWYRRAVRVSMGHIFRIPCVRVD 291

Query: 194 NLTDALQKMHSWGFQT--IGLSSDSKKPL-----EQEIKNDKIALILGAEGKGLRPKTQE 246
           NL  AL  +    F         D +  L      Q         I+G+EGKG+     +
Sbjct: 292 NLVQALTALSQEPFAVTSYAAVIDPRADLLLENIAQGAIPKSWCCIVGSEGKGISCDVIQ 351

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            AT+   + M   + +L+V  A  + L+
Sbjct: 352 AATTTLRIGMYDHVDSLSVPVATGILLH 379


>gi|317477065|ref|ZP_07936307.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906858|gb|EFV28570.1| SpoU rRNA methylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 253

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 93/259 (35%), Gaps = 22/259 (8%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
            K ++S   K ++    +     G   V   L     +   L+AT   L+          
Sbjct: 8   IKYIRSLELK-KNRKADKVFLAEGPKLVGDLL--GHFRCRFLIATVEWLS-------AHR 57

Query: 90  PFPVK---TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
             PV+    V  + +      +   Q LA+   P        V +S L + LD V DP N
Sbjct: 58  QLPVEDITEVSEKELSCASLLKTPQQVLAVFEQPDEVMDASVVAHS-LCLALDDVQDPGN 116

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G I+R A  F  + I  +     + +    ++  G +  +     ++L   +  +    
Sbjct: 117 LGTIIRLADWFGIEHIFCSPNTVDAYNPKTIQATMGGIARVKLHY-TSLPGLIGSLKD-- 173

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII----KA 262
               G   D +    Q +    + +++G EG G+  + ++      ++          ++
Sbjct: 174 IPVYGTFLDGENMYTQPLSAHGL-IVMGNEGNGIGNEVKQLINRKLYIPNYPSTRETSES 232

Query: 263 LNVSNAAAVALYITQNHFA 281
           LNV+ A AV     +   A
Sbjct: 233 LNVAIATAVVCAEFRRQAA 251


>gi|225352209|ref|ZP_03743232.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157456|gb|EEG70795.1| hypothetical protein BIFPSEUDO_03825 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 290

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 92/281 (32%), Gaps = 30/281 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
            S      ++ R  +  +  ++K R  S      + G  +V   L      +  L     
Sbjct: 4   KSEVIANPKSERVRRVSELADRKGRKRS--GRFMVEGPQSVRELLTWHPGLVEDLYVEVE 61

Query: 77  ALARLDWDA----------NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL---- 122
           +       A           +     V  V    + ++       QG+            
Sbjct: 62  SAQPDASFATPVVAQMAGKAMQSGVYVHKVTHAVMHRMSADA---QGVLAVADMQAFLDS 118

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           S   D      ++     V DP N G ++RSA A  C  ++         +  + +S  G
Sbjct: 119 SAAPDDFDEHAMVAAFWQVRDPGNAGTVIRSADAAGCSAVVLVDDCVDVFNPKVIRSTVG 178

Query: 183 ALEHIPYIRISN-----LTDALQKMHSWGFQTIGLSSDSKKPLEQEI-----KNDKIALI 232
           +L H+P + +         D   ++  +     G  S   + L   I          A++
Sbjct: 179 SLFHLPILTMGTDDFFAWCDT-HELAVYAADVYGTDSRQPESLTDVIAAPETLAGAKAVL 237

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G E +GL  +  E    +  + + G  ++LN+  ++AV L
Sbjct: 238 FGNEARGLTKEVLERTDRIVSIPLYGKAESLNLGTSSAVML 278


>gi|332667598|ref|YP_004450386.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336412|gb|AEE53513.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
           1100]
          Length = 178

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L+++LD+V    N+G+  R+A  F+   I      +      + K+A GA E + +
Sbjct: 23  EKTPLILILDNVRSALNVGSAFRTADGFALTKIYLCGITAQPPHKEILKTAIGATESVDW 82

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQE 246
             + +   A+Q + + G+Q + +  +++   LEQ     N K+A++ G E  G+  +  +
Sbjct: 83  EYVEDPCAAVQALQAAGWQVLAVEQAENSTSLEQYTPPPNAKLAVVFGNEVSGVSDEVMD 142

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  +   G   +LN++    + ++  
Sbjct: 143 IVDGALEIPQYGTKHSLNIAVCVGIVVWEL 172


>gi|40786353|dbj|BAD07003.1| conserved hypothetical protein [Onion yellows phytoplasma]
          Length = 119

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 61/113 (53%)

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +K++    ++ +AK + GALE+     ++NL   + K+       +G  S+S +   Q 
Sbjct: 1   MSKKHQVPLNSTVAKISCGALEYTKVFLVTNLHQTILKLKKNQVLIVGTDSNSSQSFHQI 60

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            KN  +A+I+G EG G+R   ++    +  + M G I +LNVS AAA+ +Y T
Sbjct: 61  PKNSSLAIIVGNEGIGIRHLLKQQCDFLVKIPMYGKINSLNVSVAAALMIYST 113


>gi|198463831|ref|XP_001352955.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
 gi|198151430|gb|EAL30456.2| GA12757 [Drosophila pseudoobscura pseudoobscura]
          Length = 405

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 42/301 (13%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    + + K+
Sbjct: 111 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIIEGRRLIKEALQCGLKMSTLIFSQKD 170

Query: 77  ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
            LA L  +           +  VP   +            LA+   P        +    
Sbjct: 171 QLALLKEEVAQAQQETHTKIYKVPQHDLKTWSSLVTPPGLLAVFDRPSEKGLEKNLAEQE 230

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   + +V D++ +P+N+G+I+R+  A  C  ++ T+       +   +   G   
Sbjct: 231 RLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCGGQF 290

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--------------- 230
            +P     +  +               ++D       E   +K+A               
Sbjct: 291 RVPIRDDVSWEEL-------SMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQIGS 343

Query: 231 ---LILGAEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              LI+G E  G+  +               ++ +   I +LNV++A  + L+  +   +
Sbjct: 344 HNLLIIGGESHGVSEEAYSFMNLVGGKGRCVYIPLAAGIDSLNVASALTLLLFELRRKLS 403

Query: 282 K 282
           +
Sbjct: 404 Q 404


>gi|319898055|ref|YP_004136252.1| methyltransferase [Haemophilus influenzae F3031]
 gi|317433561|emb|CBY81945.1| predicted methyltransferase [Haemophilus influenzae F3031]
          Length = 351

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 108/257 (42%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A     +  I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD  RN   L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   S    + A G  E+I  +   ++  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSGASMRVAEGGAEYIRVLETDDIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I +S + +  PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 273 MHLRKSGYQVIHVSHNKQGNPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|195173298|ref|XP_002027429.1| GL20885 [Drosophila persimilis]
 gi|194113281|gb|EDW35324.1| GL20885 [Drosophila persimilis]
          Length = 405

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 97/304 (31%), Gaps = 48/304 (15%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    + + K+
Sbjct: 111 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIIEGRRLIKEALQCGLKMSTLIFSQKD 170

Query: 77  ALARLDWDANLPHP---FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
            LA L  +           +  VP   +            LA+   P        +    
Sbjct: 171 QLALLKEEVAQAQQETHTKIYKVPQHDLKTWSSLVTPPGLLAVFDRPSEKGLEKNLAEQE 230

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   + +V D++ +P+N+G+I+R+  A  C  ++ T+       +   +   G   
Sbjct: 231 RLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVITRGCCDPWESKALRGGCGGQF 290

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--------------- 230
            +P     +  +               ++D       E   +K+A               
Sbjct: 291 RVPIRDDVSWEEL-------SMTIPADAADDCHVFIAESNKEKLANRRAIDYADIAQIGT 343

Query: 231 ---LILGAEGKGLRPKT---------QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              LI+G E  G+  +          +       ++ +   I +LNV++A  + L+  + 
Sbjct: 344 HNLLIIGGESHGVSEEAYSFMNLVGGKGKC---VYIPLAAGIDSLNVASALTLLLFELRR 400

Query: 279 HFAK 282
             ++
Sbjct: 401 KLSQ 404


>gi|317123375|ref|YP_004097487.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315587463|gb|ADU46760.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 288

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 91/250 (36%), Gaps = 16/250 (6%)

Query: 46  PENLFLYGVHTVSAALNNP--SRKIF---QLLATKNALARLDW-------DANLPHPFPV 93
                + G   +  AL+     R ++   +L +        +        +        +
Sbjct: 32  TGQTIVEGHEEIRLALDAGVTPRTLYVAEELFSPSGRAGSQEIGTQPELVERLRAAGVEI 91

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLDHVNDPHNIGAIL 151
             + P    K+  +E    GL      +  P      +    L +V   +  P N+GA+L
Sbjct: 92  VRLSPAAYAKVSYREGPD-GLLAVVDDVGVPLASLTVDGPSWLGLVAQRIEKPGNLGAML 150

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R+A A   D ++     +   +  + +++ G L  +P    +  ++ L  +       + 
Sbjct: 151 RTADAAGVDAVVAADPVTDWGNPNVVRASKGTLFAVPVASGT-TSETLAWLAHGAVTLVV 209

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
            + ++     +     ++A+ +G+E  G+       AT    + M G   +LNVS AAAV
Sbjct: 210 TTPETDLLHTEVDYTGRVAIAVGSEKHGVDDALLVAATHRVRIPMHGRANSLNVSVAAAV 269

Query: 272 ALYITQNHFA 281
            LY      A
Sbjct: 270 VLYEAVRQRA 279


>gi|148827623|ref|YP_001292376.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
 gi|148718865|gb|ABQ99992.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
          Length = 371

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A        I +L AT     ++    
Sbjct: 115 KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERPESIVRLWATVQMSHKIGEVL 174

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD       L++LD
Sbjct: 175 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRVFTLQGYLDIPHKEDCLVLLD 233

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   SA   + A G  E+I  +   ++  AL
Sbjct: 234 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSAASMRVAEGGAEYIRVLETDDIDSAL 292

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I +S + +  PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 293 MHLRKSGYQVIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 348

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 349 SPIKSGLNIAVNAGVLL 365


>gi|144575297|gb|AAZ53518.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 251

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 111/253 (43%), Gaps = 15/253 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 10  NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + +S+ L++L+++ +P 
Sbjct: 66  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFL-DSKRLVILENIQNPG 120

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +        +     ++ GA+       + N++D  +     
Sbjct: 121 NLGTIIRNCYSFGFDLVYSG---VDLYNVKTISASKGAIFMANIYFLKNISDFFKFGPKQ 177

Query: 206 GFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                 L  D++  ++ + I      +I G EGKG+  K  + A    ++ +    ++LN
Sbjct: 178 EIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLN 235

Query: 265 VSNAAAVALYITQ 277
           +++A A+  +  Q
Sbjct: 236 IASANAIFCHFFQ 248


>gi|144227486|gb|AAZ44231.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 251

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 111/253 (43%), Gaps = 15/253 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 10  NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 65

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + +S+ L++L+++ +P 
Sbjct: 66  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFL-DSKRLVILENIQNPG 120

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +        +     ++ GA+       + N++D  +     
Sbjct: 121 NLGTIIRNCYSFGFDLVYSG---VDLYNVKTISASKGAIFMANIYFLKNISDFFKFGPKQ 177

Query: 206 GFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                 L  D++  ++ + I      +I G EGKG+  K  + A    ++ +    ++LN
Sbjct: 178 EIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLN 235

Query: 265 VSNAAAVALYITQ 277
           +++A A+  +  Q
Sbjct: 236 IASANAIFCHFFQ 248


>gi|72080483|ref|YP_287541.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
           7448]
          Length = 249

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 111/253 (43%), Gaps = 15/253 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 8   NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + +S+ L++L+++ +P 
Sbjct: 64  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFL-DSKRLVILENIQNPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +        +     ++ GA+       + N++D  +     
Sbjct: 119 NLGTIIRNCYSFGFDLVYSG---VDLYNVKTISASKGAIFMANIYFLKNISDFFKFGPKQ 175

Query: 206 GFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                 L  D++  ++ + I      +I G EGKG+  K  + A    ++ +    ++LN
Sbjct: 176 EIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLN 233

Query: 265 VSNAAAVALYITQ 277
           +++A A+  +  Q
Sbjct: 234 IASANAIFCHFFQ 246


>gi|71893496|ref|YP_278942.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 249

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 111/253 (43%), Gaps = 15/253 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 8   NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 63

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + +S+ L++L+++ +P 
Sbjct: 64  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFL-DSKRLVILENIQNPG 118

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +        +     ++ GA+       + N++D  +     
Sbjct: 119 NLGTIIRNCYSFGFDLVYSG---VDLYNVKTISASKGAIFMANIYFLKNISDFFKFGPKQ 175

Query: 206 GFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                 L  D++  ++ + I      +I G EGKG+  K  + A    ++ +    ++LN
Sbjct: 176 EIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLN 233

Query: 265 VSNAAAVALYITQ 277
           +++A A+  +  Q
Sbjct: 234 IASANAIFCHFFQ 246


>gi|284035447|ref|YP_003385377.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
 gi|283814740|gb|ADB36578.1| tRNA/rRNA methyltransferase (SpoU) [Spirosoma linguale DSM 74]
          Length = 176

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD +   +N+G++ R+A AF  + +             + K+A GA E + +  ++++
Sbjct: 29  LILDDIRSLNNVGSVFRTADAFRAEKLYLCGITGQPPHRDITKTALGATESVAWEHVTDV 88

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQETATSMA 252
           T  ++++ + G+    +  +D    L       N   A +LG E  G+  +  + A  + 
Sbjct: 89  TALVKQLQADGWLVAAVEQADGSTSLADFSPEPNKPYAFVLGNEVTGVCDEVIQAADLVL 148

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
            +   G   +LN++  A +  +
Sbjct: 149 EIPQFGTKHSLNIAVTAGIICW 170


>gi|86130258|ref|ZP_01048858.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818933|gb|EAQ40092.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 218

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 3/163 (1%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           Q    E    L   + + R +   + ++ V   HN  A++RS  +F    +   +  +  
Sbjct: 10  QSFLTERRVQLFDKVLSERTTHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEEVNA- 68

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIA 230
              +  + A GA + +   R ++ +  ++ +   G++ +  S       LE+    +K A
Sbjct: 69  -KRIDREIAMGAQKWVDVARHNSASSCIKSLREQGYKIVATSPHKDAHRLEEFDVTEKAA 127

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  G E +GL     E A    ++ M G  ++LN+S +AA+ L
Sbjct: 128 IFFGRETEGLSELVMEEADDFIYIPMVGFTESLNISVSAAITL 170


>gi|89889339|ref|ZP_01200850.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
 gi|89517612|gb|EAS20268.1| RNA methyltransferase, SpoU family [Flavobacteria bacterium BBFL7]
          Length = 242

 Score =  135 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 91/250 (36%), Gaps = 22/250 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+     + ++    +   + G  ++   L+       Q+L T+   A            
Sbjct: 8   KLLKGLSRKKNRDDHQLFLVEGYKSILE-LSQTDLVRQQVLVTEGHHA--------LDSL 58

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           P   +  + +  I   +     LA+   PL       +  S L + LD V DP N+G I+
Sbjct: 59  PTDIISKKDMANISTLKTPPGYLAVFEMPLKR----EINLSGLTVALDDVKDPGNLGTII 114

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    F    II +       +    +++  +L  +    + NL + LQ   S  F    
Sbjct: 115 RLCDWFDVKQIICSTETVDVFNPKCVQASMASLGRVQVDYV-NLEEFLQDASSKIF---- 169

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---IIKALNVSNA 268
            ++ +   + +    D   L++G E  G+  +  +       +   G     ++LNV+ A
Sbjct: 170 TTAMNGVSIYETNLPDHGILVMGNESAGISEEIMKLGN-KISIPQYGSQPSTESLNVAMA 228

Query: 269 AAVALYITQN 278
            AV L   + 
Sbjct: 229 TAVVLGEWRR 238


>gi|91215168|ref|ZP_01252140.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
 gi|91186773|gb|EAS73144.1| tRNA/rRNA methyltransferase [Psychroflexus torquis ATCC 700755]
          Length = 178

 Score =  135 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 71/156 (45%), Gaps = 5/156 (3%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                    + L+++LD++   +NIG++ R++ AF    I      +      + K+A G
Sbjct: 15  DEEFKDSPKTPLILILDNIRSLNNIGSVFRTSDAFLIQKIYLCGITATPPHKDIQKTALG 74

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGK 238
           A + + +  + N  + ++ +   G + + +   ++  +  +  N +     AL+LG E K
Sbjct: 75  ATQTVDWAYVENTLEVVKDLQQQGVKVMSIEQ-AEDSISLKDFNPRQNQLYALVLGHEVK 133

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G++ +  + +  +  +   G   +LN+S    + ++
Sbjct: 134 GVQQEVVDQSDGVLEIPQLGTKHSLNISVTTGICVW 169


>gi|54020405|ref|YP_115751.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|53987578|gb|AAV27779.1| rRNA methylase [Mycoplasma hyopneumoniae 232]
          Length = 252

 Score =  135 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 111/253 (43%), Gaps = 15/253 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K++     K ++ +      + G   + +A+N     + ++L TKN + +     
Sbjct: 11  NNPIIKEIGKLKLK-KYRNLWNKFVVEGEKDIESAINAG--LVLRILTTKNNVEKYQKV- 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
                  V  V  + ++K+   ++  + +A+  +       D + +S+ L++L+++ +P 
Sbjct: 67  ----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFL-DSKRLVILENIQNPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G I+R+  +F  D + +        +     ++ GA+       + N++D  +     
Sbjct: 122 NLGTIIRNCYSFGFDLVYSG---VDLYNVKTISASKGAIFMANIYFLKNISDFFKFGPKQ 178

Query: 206 GFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                 L  D++  ++ + I      +I G EGKG+  K  + A    ++ +    ++LN
Sbjct: 179 EIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLADKKIYIPI--NFESLN 236

Query: 265 VSNAAAVALYITQ 277
           +++A A+  +  Q
Sbjct: 237 IASANAIFCHFFQ 249


>gi|228472059|ref|ZP_04056827.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276671|gb|EEK15384.1| SpoU rRNA methylase family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 178

 Score =  135 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 73/175 (41%), Gaps = 11/175 (6%)

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           + +G E +H+    +                +++VLD++   +NIG++ R+A AF    I
Sbjct: 2   RKLGNEELHRLSVAQYK--------ETPKIPVIVVLDNIRSLNNIGSVFRTADAFCIQKI 53

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE 221
                 +      + K+A GA E + +  + ++T  ++ +     + I +   +    LE
Sbjct: 54  YLCGITATPPHKEIHKTALGATESVEWEYVQDITTLVESLRQRQVEVIAIEQVEDAVSLE 113

Query: 222 QEIKNDKI--ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +  ALI G E +G++            +   G   +LN++ +A + L+
Sbjct: 114 HFSPKKGVTYALIFGNEVEGVQQSVVSLCQRAIEIPQYGTKHSLNIAVSAGILLW 168


>gi|194246610|ref|YP_002004249.1| rRNA methylase [Candidatus Phytoplasma mali]
 gi|193806967|emb|CAP18399.1| rRNA methylase [Candidatus Phytoplasma mali]
          Length = 238

 Score =  135 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 100/236 (42%), Gaps = 29/236 (12%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           +   ++G H +  A    ++ I ++ +T      +    NL           +T+ K V 
Sbjct: 26  QQFLVFGDHLIEEA--EKTKSILEIYSTSLNKKGILISNNLMKDLK----QTKTLFKQVA 79

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
               HQ              +    S  ++VLD + DP N+G +LRSA+AF  + ++ ++
Sbjct: 80  -ICRHQ--------------NNPIVSNKVLVLDDIQDPSNLGVLLRSALAFGFNQVLLSE 124

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-GLSSDSKKPLEQEIK 225
             +   +    +++ GA+ ++ Y +  NL   LQ   +  ++    L   +KK L  +  
Sbjct: 125 NSASFYNEKTIRASQGAIFYL-YFQRGNLEYLLQNFKNKNYKIFSSLVRKNKKTLSIDQL 183

Query: 226 ND-----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           N      K  L+LG EG G+    +       ++     +++LNVS A ++ ++  
Sbjct: 184 NKFPEDVKKILVLGNEGAGISHNIELITDYFLNIPTK-KVESLNVSVAGSILMHYL 238


>gi|301155625|emb|CBW15093.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 357

 Score =  135 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 106/274 (38%), Gaps = 13/274 (4%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           +S  +  +  S     +   +    +     +    ++ E + +YG +            
Sbjct: 83  ESGSVKVMVKSTGVSYKPKEKKTGALSPRAPEKIKKNRAEEMKVYGENACLELFAERPES 142

Query: 68  IFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL---- 121
           I ++ AT     R+         +      V    +  + G E  H G+ +         
Sbjct: 143 IVRVWATVQMAHRIGEIFSYLAANKKVYHVVDSDELSLVSGTE-HHGGICMLVKKQRTFS 201

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L   LD  R    L+VLD VN+  N+G ++R+ V +    ++T +      +    + A 
Sbjct: 202 LQGYLDVPRQEDCLVVLDQVNNAQNLGGVVRTCVFYGIKNVVTNQ-VEQLYAPAAMRVAE 260

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGL 240
           G +EHI  +   +   AL+ +   G+Q I +S++ +   LEQ     K+AL+L +EG   
Sbjct: 261 GGMEHIRILETESTEIALEALRKAGYQIIHVSTNKQGIALEQLKFAAKVALVL-SEGS-- 317

Query: 241 RPKTQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273
               +E       L +   +K  LN++    + L
Sbjct: 318 TDDIREKEDVNVRLSLSNPLKTGLNIAVNTGILL 351


>gi|239622239|ref|ZP_04665270.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514236|gb|EEQ54103.1| putative rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 292

 Score =  135 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 90/271 (33%), Gaps = 30/271 (11%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANL 87
           D  +  +   +++   +     + G  +V  A+      +  L      AL      ++ 
Sbjct: 14  DRVRRIADLTRAKGRERSGRFLIEGPQSVREAVTWRPDVVQDLYVEVSQALEHPRIISST 73

Query: 88  PHPFP---------VKTVPPQTIDKIVGKEAVHQGLALE-TAPLLSPTLDAVR-----NS 132
                         V       + +I       QG+A    A  +    D V       +
Sbjct: 74  LEKIVETSQDATIYVHYCTGDVMRRISPDA---QGIAAVGNAESMHAGADDVELGKNGRA 130

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             +     V DP N G ++R+A A  CD +I         +  + +S +G+L H+P + +
Sbjct: 131 PQIAAFWQVRDPGNAGTVIRAADAAGCDAVIFVDDCVDVLNPKVIRSTAGSLFHLPVLAM 190

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----------LILGAEGKGLRP 242
            +  +                    +  + E     +A          ++ G E +GL P
Sbjct: 191 -STDEFFTWTGDHNMDVWAADVYGTEERKPESLPAVLADKAAVEAPKTVLFGNEARGLEP 249

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   +  + + G  ++LN+  +AAV L
Sbjct: 250 DILTRCGRIVSIPLYGKAESLNLGTSAAVML 280


>gi|188582880|ref|YP_001926325.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
 gi|179346378|gb|ACB81790.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
          Length = 269

 Score =  135 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 84/236 (35%), Gaps = 10/236 (4%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKI--FQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
           +     + G  T+   L +P  +     +L           D       PV       + 
Sbjct: 29  RQGRFIVEGEVTLR-LLFSPGARFAAESVLLAPERWPGFS-DLLRGDGPPVYLAGKDVMS 86

Query: 103 KIVGKEAVHQGLALE----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
            + G   +H+G+         P+    +       L++ +  + +  N+G + R+A AF 
Sbjct: 87  AVAGF-PIHRGVLAVGLRGAEPVPEALVPPAPAPALVVGMVGLTNHDNVGGLFRNAAAFG 145

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
            D +               + ++GA   +P+ R ++    L          + L+    +
Sbjct: 146 ADAVWLDAETCDPLYRKAIRVSAGAALTVPFARAASGAALLDLAQRHDLTPLALTPGGHE 205

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            L++     +  L+LG EG GL       A     + M     +LNV+ A A+AL+
Sbjct: 206 TLDRLAPPSRALLLLGTEGPGLPEALMARA-RRLRIAMAPGFDSLNVATAGAIALH 260


>gi|167753418|ref|ZP_02425545.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
 gi|167658043|gb|EDS02173.1| hypothetical protein ALIPUT_01692 [Alistipes putredinis DSM 17216]
          Length = 178

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 3/149 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    + +VLD+V    N+GA  R+A AF+ + I      +   +  + K+A GA   + 
Sbjct: 20  MEKMPVAVVLDNVRSMQNVGAFFRTADAFAVERIALCGITATPPNREIHKTALGAELTVA 79

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQE--IKNDKIALILGAEGKGLRPKTQ 245
           +   +  TD +  + + G+    +   +    L++       K AL+ G E  G+  +  
Sbjct: 80  WDYFAATTDCIAALRAQGYLIYVVEQVEGAVMLDEFRPRPGQKYALVFGNEVDGVAQEVV 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + A     +   G   ++NVS A  V L+
Sbjct: 140 DAADGAIEIPQAGTKHSVNVSVAGGVVLW 168


>gi|302807158|ref|XP_002985292.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii]
 gi|300147120|gb|EFJ13786.1| hypothetical protein SELMODRAFT_121615 [Selaginella moellendorffii]
          Length = 248

 Score =  135 bits (341), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 2/148 (1%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           V + +++  NI AI RSA AF    +      +      + ++  G    +     +   
Sbjct: 55  VAEALDNAGNIAAIFRSAEAFGFQSVHVITSLTVKGYKGVRRAHRGTERWLDVEVWNCAK 114

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           D +Q + S G++    S S     +         A+I G E +G    +   A  +  + 
Sbjct: 115 DCIQALRSRGYRIAVTSTSHDTVSICDMDWTIPTAVIFGNEHEGASDYSTSQADILCGIP 174

Query: 256 MPGIIKALNVSNAAAVAL-YITQNHFAK 282
           M G++ +LNVS AA + + +   +  A+
Sbjct: 175 MFGMVDSLNVSVAAGILMRHAVCDRIAR 202


>gi|302337050|ref|YP_003802256.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301634235|gb|ADK79662.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 229

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 9/152 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + +VL+ +  PHN  A+LRS   F    +   +  +     + +  A G    +  
Sbjct: 33  RTRYITVVLEDIYQPHNASAVLRSCEGFGIQDVHVIENRN--RFTISSGVALGTSGWLDI 90

Query: 190 IRI-----SNLTDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRP 242
            R       N   A+ ++ + G++ +  S  ++     + +I   K A + G E +G+  
Sbjct: 91  HRYREEGAGNTLKAVHELKAKGYRIVATSPHAQDINLEDFDISAGKSAFLFGNELEGVSQ 150

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +    A     + M G +++ N+S + A+ L+
Sbjct: 151 EAMALADEFMKIPMRGFVESFNISVSCAIVLH 182


>gi|113475890|ref|YP_721951.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110166938|gb|ABG51478.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 234

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + ++L+ +  PHN  A+LRS  +F    +   +  +     +      G+   +  
Sbjct: 32  RTRDITVILEDIYQPHNASAVLRSCDSFGVQDVHIVENKN--IFTITQSVTIGSDRWLTL 89

Query: 190 IR-----ISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            R     I+N  + L+++ + G+     +       +E+   N K+AL+ G+E  GL   
Sbjct: 90  YRYNEQSINNTEECLKRLKNEGYVIAATTPYKEHITIEELSVNTKVALMFGSEINGLSEY 149

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +  A     + M G  ++ N+S +AA+ LY   +   K
Sbjct: 150 AKNNADVSVKIPMVGFSESFNISVSAALCLYNLMSRLKK 188


>gi|50557128|ref|XP_505972.1| YALI0F27995p [Yarrowia lipolytica]
 gi|49651842|emb|CAG78784.1| YALI0F27995p [Yarrowia lipolytica]
          Length = 608

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 21/165 (12%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L++ LD +ND HN+G+ILRS      D +I T +     S  +AK++SGALE++P 
Sbjct: 438 RRFPLVVYLDQLNDTHNLGSILRSCQFLGADAVIVTAKNCAPLSPAVAKTSSGALEYMPV 497

Query: 190 IRISNL-TDALQKMHSWGFQTIGLS---------SDSKKPLE-----QEIKNDKIALILG 234
              S       QK  + G+  +  +         S + KPL        + N    L+LG
Sbjct: 498 FENSKTPAHFFQKCKNNGWNIVCAAVPTASGAAKSKADKPLSLRQCGSWLDNKPTVLVLG 557

Query: 235 AEGKGLRPKTQETATSMAHLHMP------GIIKALNVSNAAAVAL 273
            E  G+R      A     +           + +LNV  AA + +
Sbjct: 558 GEHGGVRQTILNQADHHVIVPASNSWIKNNTVDSLNVGVAAGILI 602



 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK--IFQLLATKNALA----RLDW 83
           ++  Q++++            LYG H V A L +  R+    +L   +  L     +   
Sbjct: 159 FRNRQTYDKPKLDERFFGQDVLYGTHAVEACLTSHKRRNQCLKLFVGEGKLGEPVVKKIM 218

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           D       P + V   T++ ++ K A+H G+AL T P
Sbjct: 219 DMARKLRIPTENVDRNTLN-LITKHAIHNGVALVTKP 254


>gi|312891695|ref|ZP_07751205.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
 gi|311295879|gb|EFQ73038.1| tRNA/rRNA methyltransferase (SpoU) [Mucilaginibacter paludis DSM
           18603]
          Length = 177

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLL---MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+   L   ++D  +    L   +VLD+V   HN+G+I R++ AF+ + I          
Sbjct: 4   LKLDELNRASVDEFKAQDKLPVAVVLDNVRSLHNVGSIFRTSDAFAVEQICLCGITGLPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKI 229
           +  + K+A GA + + +    +  DA+ ++   G+  I +       +    + I  +K 
Sbjct: 64  NREIEKTALGATQSVNWKHYPSTLDAIHQLRVDGYLIIAIEQAVDSTMLNQFEPIPGEKY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ALI G E  G+  +  E       +   G   + N+  +A + L+
Sbjct: 124 ALIFGNEVNGVADEVMEQIDGCIEIPQFGTKHSFNIVVSAGIILW 168


>gi|298207614|ref|YP_003715793.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
 gi|83850250|gb|EAP88118.1| putative SpoU rRNA methylase family protein [Croceibacter
           atlanticus HTCC2559]
          Length = 178

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 77/165 (46%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+ A L   T++  +++    L+++LD+V   HN+G++ R+A AF  + I      +   
Sbjct: 6   LKNAELDRKTVEEFKDATKTPLIIILDNVRSFHNVGSVFRTADAFLIEKIYLCGITAQPP 65

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---I 229
              + K+A GA E + +  +++    ++++     + + +       +    K +     
Sbjct: 66  HKDIRKTALGATETVVWEYVNDTVALVERLKEDHVKILAIEQAEDAIMLNTFKPEPNTTY 125

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           A++ G E KG++      + ++  +   G   +LN+S +  V ++
Sbjct: 126 AVVFGNEVKGVQQDVVSQSDAVIEIPQFGSKHSLNISVSVGVVMW 170


>gi|320590055|gb|EFX02500.1| RNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 719

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 107/288 (37%), Gaps = 65/288 (22%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALA-------RLDWD----ANLPHPFPVKTVP- 97
           FLYG   V AAL +  R++++L   + A         R   D      +     ++ V  
Sbjct: 385 FLYGRSVVEAALRSDRRQLYRLYVHRAAAEYGRHSRGRQQDDGIERLAVARGLSIQHVDA 444

Query: 98  --PQTIDKIVGKEAVHQGLALETAPLLSPTLDAV---RNSQLLMVL------DHVND--- 143
              + +DK+  K   H G  LE +PL  P + A+   R     + L      D   +   
Sbjct: 445 RGQRLMDKM-SKGRPHNGYVLEASPLRQPPVVALGRWREHGFDVELGHQSREDAAVNGTD 503

Query: 144 ----------------------------PHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
                                       P N+GAILR+A       +  ++R S   ++V
Sbjct: 504 TFVQIARPGSNTTAGRHPLVLLLDQVLDPGNLGAILRTASFLGVSAVAVSQRSSAGLTSV 563

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--PLEQEIKNDKIA--- 230
             K+++GA E +  + + +    + +    G++         +   LE    +D +    
Sbjct: 564 ALKASAGAAEAMALLSVEDAASFVTRSRDAGWRVYAAVIPGSRTADLEDVETDDPLGRQA 623

Query: 231 --LILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVAL 273
             L++G+EG+GL    +  A     +        + +LNVS AA +  
Sbjct: 624 CLLVVGSEGEGLPRTVRRAADVEVAIANRSGSDVVDSLNVSVAAGLLC 671


>gi|332518956|ref|ZP_08395423.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044804|gb|EGI80997.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 240

 Score =  135 bits (340), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 103/251 (41%), Gaps = 22/251 (8%)

Query: 32  KMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF 91
           K+ +  ++ ++          GV  ++  LN+   ++  L  T+    +++ +  L    
Sbjct: 8   KLITRLKQKKYRVAEGFFVAEGVKVINELLNST-LELHHLFTTETF--KINNNETL---- 60

Query: 92  PVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
               +    + KI      ++ LA+   P        +  + L++ LD V DP N+G I+
Sbjct: 61  ----ITQAELKKISFLTTPNKALAVFKIPEAVK----IDTNGLIVALDDVRDPGNLGTII 112

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           R    +    ++ +       +  + ++  G++  +    + NL+  L+   +     +G
Sbjct: 113 RLCDWYGITNLVCSIGTVDCYNPKVIQATMGSITRVNISYL-NLSYFLK--QNNKTPILG 169

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNA 268
              D +   + ++ N  I L++G E  G+    +E  T+   +   G     ++LNV+ A
Sbjct: 170 AFMDGENVYKTKLPNSGI-LVMGNEANGVSKTIEEQVTNRIAIPRFGTLQATESLNVATA 228

Query: 269 AAVALYITQNH 279
            A+ L   + +
Sbjct: 229 TAILLSEFKRN 239


>gi|229844416|ref|ZP_04464556.1| rRNA methylase [Haemophilus influenzae 6P18H1]
 gi|229812665|gb|EEP48354.1| rRNA methylase [Haemophilus influenzae 6P18H1]
          Length = 351

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A     +  I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD  RN   L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   SA   + A G  E+I  +    +  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSAASMRVAEGGAEYIRVLETDYIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
            ++   G+Q I +S + +  PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 273 MQLRKSGYQVIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|313157844|gb|EFR57254.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 227

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEH 186
           A+R   + ++ +++    N  A++R   AF    + T +       +  + +   G  + 
Sbjct: 36  AMRTRYMTVLAENMYHGQNAAALIRHCEAFGVQEMHTVETLCRFEPNPDIVR---GTDQW 92

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK--PLEQEIKNDKIALILGAEGKGLRPKT 244
           +   R  +  +AL  + S G++ +  +   +   P   ++     AL+ G E  G+  + 
Sbjct: 93  VDVRRHPSTGEALAALRSAGYRIVATTPHREDVTPETFDVAAGPFALVFGTEHAGISDEV 152

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              A     + M G++++LNVS +AA+ +Y+ 
Sbjct: 153 IAGADEFLRIPMCGMVESLNVSASAAILIYML 184


>gi|56753289|gb|AAW24848.1| SJCHGC03201 protein [Schistosoma japonicum]
          Length = 237

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 33/179 (18%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N   +++LDHV D  N G+ILRSA  F    +I +     S S +++K + GA+E I + 
Sbjct: 39  NRPTVLLLDHVMDIMNFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGAMESIRFY 98

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---------------------NDKI 229
           R+++    ++ +   GF  +G   +++ P  +  K                        +
Sbjct: 99  RLTDTVMDMKSLSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPL 158

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGII------------KALNVSNAAAVALYIT 276
            L LG+E +GL      +   +  +   G               +LNV+ A  + LY  
Sbjct: 159 VLALGSESRGLSENILNSCDLLLRIPGFGDSTKFNHCVSQSIPSSLNVAVATGILLYQL 217


>gi|163753137|ref|ZP_02160261.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
 gi|161326869|gb|EDP98194.1| tRNA/rRNA methyltransferase [Kordia algicida OT-1]
          Length = 176

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
               +   + L+++LD++   +NIG++ R++ AF  + I      +      + ++A GA
Sbjct: 15  DEFKSSEKTSLIVILDNIRSLNNIGSVFRTSDAFLIEKIYLCGITAKPPHKDIHRTALGA 74

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGL 240
            + + +    +    ++++     +   +       +  E + +K    AL+ G E KG+
Sbjct: 75  TDSVVWEYCEDTLALVKELQENDVKVAAIEQAENAMMLNEFQPEKQHTYALVFGNEVKGV 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + +    +  +  +   G   +LN+S +A V L+      
Sbjct: 135 QQEVVSASDYVLEIPQFGTKHSLNISVSAGVVLWDVFRKL 174


>gi|229846510|ref|ZP_04466618.1| rRNA methylase [Haemophilus influenzae 7P49H1]
 gi|229810603|gb|EEP46321.1| rRNA methylase [Haemophilus influenzae 7P49H1]
 gi|309972419|gb|ADO95620.1| Putative rRNA methylase [Haemophilus influenzae R2846]
          Length = 351

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 105/257 (40%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A        I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERPESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD       L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   S    + A G  E+I  +   ++  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSGASMRVAEGGAEYIRVLETDDIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I +S + +  PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 273 MHLRKSGYQIIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|332293222|ref|YP_004431831.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171308|gb|AEE20563.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 218

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 3/163 (1%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           Q    E    L   +   R +   + ++ V   HN  A++RS  +F    +   +    +
Sbjct: 10  QSFLTERRVQLFDKVLKERTNHFTVAVEDVYQLHNTSAVIRSCESFGVQELHVIEE--VN 67

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIA 230
              +  + A GA + +   R S+    ++ +   G++ +  S       LE     +K A
Sbjct: 68  VKRIDREIAMGAQKWVDVQRHSSAKHCIENLRKQGYKIVATSPHKDAHRLEDFDITEKAA 127

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  G E +GL     + A    ++ M G  ++LN+S +AA+ L
Sbjct: 128 IFFGRETEGLSDTVLDMADDFIYIPMVGFTESLNISVSAAITL 170


>gi|152979660|ref|YP_001345289.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes
           130Z]
 gi|150841383|gb|ABR75354.1| tRNA/rRNA methyltransferase (SpoU) [Actinobacillus succinogenes
           130Z]
          Length = 361

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 115/278 (41%), Gaps = 13/278 (4%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           I++ +  K+  +  S    ++   +    +     +    ++ E + ++G +        
Sbjct: 83  ITETQLGKVKVVTKSTGGDIQTKKKKTGPLSPRAPEKIKKNRAEEMKVFGENACFTLFAQ 142

Query: 64  PSRKIFQLLATKNALARLDWD-ANLPHPFPVK-TVPPQTIDKIVGKEAVHQGLALETAPL 121
               I ++  T     +     + L     V   V  + ++++ G E  H G+ +     
Sbjct: 143 RPASIIRVWTTVETAHKTGEMFSYLAANKKVYHVVDREELERVSGTE-HHGGICMLVKKR 201

Query: 122 ----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               L   LD  R    L++LD+V +P NIG ILR+   +    +IT +    ++SA   
Sbjct: 202 HPFTLKGYLDITRKEDSLVLLDNVRNPQNIGGILRTCAVYGVKALITAEPE-LTQSANAM 260

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAE 236
           + A G  E +  ++I++   AL ++   G+Q I  S+D   K + + ++  K   +L +E
Sbjct: 261 RVAEGGAEFVNILQINDTEQALAQLRQAGYQVIFTSTDKQAKSMNKLMRMKKAVFVL-SE 319

Query: 237 GKGLRPKTQETATSMAHLHMPGIIK-ALNVSNAAAVAL 273
              +     +    + +L     +K  LNV+  A V L
Sbjct: 320 SD-VS-GFAQNGDEVVNLSFANPLKTGLNVAVTAGVLL 355


>gi|78187117|ref|YP_375160.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
           273]
 gi|78167019|gb|ABB24117.1| tRNA (guanosine-2'-O-)-methyltransferase [Chlorobium luteolum DSM
           273]
          Length = 219

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA---KSASGALEH 186
           R   L +V+D+VN PHN+ A++RS  A     +     ++ S+   +     +A+G+   
Sbjct: 17  RQPDLTVVMDNVNKPHNLSALIRSCDAVGIHDL-----HAVSKQRSIHTRQHAAAGSSRW 71

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                   + +    +   G Q +  +   +     +       A+ILGAE  G+  +  
Sbjct: 72  TRLHLWHEIKEPCSALRREGMQLLAATNVAAAVDFREIDYTLPTAVILGAEWDGVSKEAI 131

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             A     +   G++++LNVS AAAV L+  +   +
Sbjct: 132 GEADRTIMVQTHGMVESLNVSVAAAVILFEAERQRS 167


>gi|167856325|ref|ZP_02479055.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219871054|ref|YP_002475429.1| rRNA methyltransferase [Haemophilus parasuis SH0165]
 gi|167852555|gb|EDS23839.1| predicted rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219691258|gb|ACL32481.1| rRNA methyltransferase [Haemophilus parasuis SH0165]
          Length = 335

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 14/248 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
             ++   + +YG H  SA        I +L  T     +     +    H      V  +
Sbjct: 92  RNNRASEMKVYGEHACSAIFQQRPEAIVRLWITSECAKKTGALLSYLADHKKAYHLVDTE 151

Query: 100 TIDKIVGKEAVHQGLALETA---PL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + ++ G E  H G+ L      P  L   L   R    L++LD VN+  NIG I+R+  
Sbjct: 152 EMLRVTGTE-HHGGMCLLVKKSTPFSLEGYLQLERQHDCLILLDGVNNAQNIGGIIRTCA 210

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            +   GII  +      S+  A+ A G LE +  +   +   AL ++   G+Q + L+  
Sbjct: 211 FYGIKGIIV-ENNDILNSSNAARVAEGGLEFVYPLETKHKHIALMQLRKAGYQIVHLTRQ 269

Query: 216 SKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
            + P L + + + KI  +L +E   +  + +    S+  L     + + LNV+  A + L
Sbjct: 270 RQAPHLSRIVLSKKIVFVL-SEV--ISNEVEYPEDSIVQLSFANSLNSGLNVAVNAGILL 326

Query: 274 Y-ITQNHF 280
               QNH 
Sbjct: 327 AQWYQNHM 334


>gi|320160887|ref|YP_004174111.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319994740|dbj|BAJ63511.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 193

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD++    N+GAI RSA       I         E+  + K+A GA + + +   +N 
Sbjct: 43  VLLDNLRSTWNVGAIFRSADGAGVSRIHLCGITPTPENPQVVKTALGAEKSVDWEYHANG 102

Query: 196 TDALQKMHSWGFQTIGLSS-DSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETATSM 251
                +  S G+  I L   ++  PL   +    +  I L+ G E  G+ P   E   ++
Sbjct: 103 LTLALRAKSDGYHLIALEGGENSLPLHTILPLNDSRPILLVAGNEVTGIDPDIFELCDTV 162

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             L M GI  +LNV+ A  +ALY+ +
Sbjct: 163 TFLPMFGIKNSLNVAVATGIALYLLR 188


>gi|260063174|ref|YP_003196254.1| spoU protein [Robiginitalea biformata HTCC2501]
 gi|88783268|gb|EAR14440.1| spoU protein [Robiginitalea biformata HTCC2501]
          Length = 217

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 5/148 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186
           A R   + + L  V   HN  A++RS   F   D  +  +R+    + +    A GA   
Sbjct: 26  ANRTRYITVALQDVYQLHNASAVIRSCDIFGIQDAHLIEERFG---NRLDKNIAMGAQRW 82

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   R  +    +  +   G++ +  S        E    +  +A+  G E +GL     
Sbjct: 83  VDIHRYKSTDACVHALREKGYRIVATSPHQGSVSPEALPLDTPVAVFFGTEKEGLSEGLI 142

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVAL 273
             A +   + M G  ++LNVS AAA+ L
Sbjct: 143 RQADAAIQIPMVGFTESLNVSVAAAIVL 170


>gi|227536035|ref|ZP_03966084.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243932|gb|EEI93947.1| SpoU rRNA methylase family protein [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 177

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 8/169 (4%)

Query: 121 LLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           L  P ++  +      +++VLD+V   HN+G+  R++ AF+ + II            + 
Sbjct: 9   LQRPDVETFKKQSKIPVVLVLDNVRSMHNVGSAFRTSDAFAVEKIILGGITGTPPHREIE 68

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK--NDKIALILG 234
           K+A GA   + +    +L   L  +   G+Q + +  ++    L Q     + K A + G
Sbjct: 69  KTALGATSSVDWEHAPDLISRLNALKDEGYQILAIEQAEGSVMLHQFEPSSDQKYAFVFG 128

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
            E  G+  +  + +     +   G   + N+S    + L+  + +N F 
Sbjct: 129 NEVHGVDEEIMKISDGCLEIPQFGTKHSFNISVTIGIVLWDFVVKNRFN 177


>gi|319775649|ref|YP_004138137.1| methyltransferase [Haemophilus influenzae F3047]
 gi|329122299|ref|ZP_08250887.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116]
 gi|317450240|emb|CBY86456.1| predicted methyltransferase [Haemophilus influenzae F3047]
 gi|327473860|gb|EGF19277.1| tRNA/rRNA methyltransferase [Haemophilus aegyptius ATCC 11116]
          Length = 351

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A        I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERPESIVRLWATVQMSHKIGDVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L        +L   LD       L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRVFMLQGYLDIPHKEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   S    + A G  E+I  +   ++  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSGASMRVAEGGAEYIRVLETDDIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I +S + +  PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 273 MHLRKSGYQIIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|307717880|ref|YP_003873412.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
           6192]
 gi|306531605|gb|ADN01139.1| RNA methyltransferase, TrmH family [Spirochaeta thermophila DSM
           6192]
          Length = 265

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +D+++G       L+LE    L P         + + L+ +  P+N+GAI RSA AF   
Sbjct: 89  LDELLGTWTADWDLSLEPRGALPPRTSL----PIWVYLEDLRSPYNVGAIFRSAEAFGAS 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI  +      +    A++A G    +P+ R+       +++   G   + L +    P+
Sbjct: 145 GIYLSPATPTPDHPRAARTARGTQHVLPWERLP-----AERLGGLGLPILALET-GGTPI 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETA---TSMAHLHMPGIIKALNVSNAAAVAL-YIT 276
           +      +  +++G E  G+ P+    A        + + G   +LNVS AA + L Y +
Sbjct: 199 DTYPFPPEGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILLCYWS 258

Query: 277 Q 277
           +
Sbjct: 259 R 259


>gi|239979522|ref|ZP_04702046.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces albus J1074]
          Length = 277

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 95/244 (38%), Gaps = 13/244 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            RN R +++ ++     +  +Q     + GV  +S A+    R   + L   ++     W
Sbjct: 9   SRNAR-FQQWEALLGNRKKRNQLREFLVQGVRPISLAVEYGWR--VRALLYDDSRKLSGW 65

Query: 84  DANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLD 139
              +      + V   P+ + ++ G+++      +    + +  L+ +      L ++ D
Sbjct: 66  AREVLGAVEGERVALAPELMAEL-GEKSGGAPEVVAVVEVPADDLERIEAGPEFLGVLFD 124

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIG+I+RSA AF   G+I +   +        ++ +G+L  +P +R+ +  + +
Sbjct: 125 RPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVPSPAEVM 184

Query: 200 QKM---HSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             +    + G   +           +        + L++G E  GL    +E       +
Sbjct: 185 AWVERRRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVCDVTVSI 244

Query: 255 HMPG 258
            M G
Sbjct: 245 PMAG 248


>gi|168017078|ref|XP_001761075.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687761|gb|EDQ74142.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 241

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 1/152 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   + + ++ + D  N+ A+ RSA A     +      +        K + G  + +
Sbjct: 47  ANRTYSICIAVEGLLDLGNVSAVCRSADALGFQSVHVISNETKKRYKKNRKVSMGTEKWL 106

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                SN +D +  +   G++      +     +         A+  G E  G   +  +
Sbjct: 107 DAELWSNTSDCIDTLRQRGYRIAVTHIAPDTVSIYDMDWTIPTAVFFGNEFMGASEEAIK 166

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +     + M G++++ N+S AA + ++    
Sbjct: 167 QSDVRCCIPMAGMVESFNISVAAGIIMHHAAR 198


>gi|86131594|ref|ZP_01050192.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818039|gb|EAQ39207.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 179

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 74/154 (48%), Gaps = 3/154 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                   + L++VLD++   +N+G++ R+A AF  + +      +      + K+A GA
Sbjct: 17  ADFKEAEKTPLIIVLDNIRSLNNVGSVFRTADAFLVEKVYLCGITATPPHRDIQKTALGA 76

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGL 240
            + + +  + +     Q++   G +   +  ++    L++   +K ++ A++ G E KG+
Sbjct: 77  TDAVAWEYVEDSVALSQRLKEQGVKLCAIEQAEDAVMLDKFTPVKGERYAVVFGNEVKGV 136

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +    + ++  +   G   +LN+S +A V ++
Sbjct: 137 QQEIVSLSDTVLEIPQVGTKHSLNISVSAGVVIW 170


>gi|313676389|ref|YP_004054385.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312943087|gb|ADR22277.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 181

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L       V+ + +++VLD+V   +N+G+  R+  AF  + I      +      + K+A
Sbjct: 12  LEVDEFKKVKKNPIVLVLDNVRSMNNVGSAFRTGDAFLIEKIYLCGITAQPPHREINKTA 71

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK--NDKIALILGAEG 237
            GA E + +    N  DA+ K+   G++ + +  +++   LE+     ++K A I G E 
Sbjct: 72  LGATETVEWEHFENTLDAVAKLKQDGYKIMSVEQAENSLSLEKFAPKADEKYAFIFGNEV 131

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+  +  + +     +   G   +LN+S +  V L+
Sbjct: 132 YGVEQEVVDQSDHCLEIPQFGTKHSLNISVSIGVVLW 168


>gi|291451390|ref|ZP_06590780.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291354339|gb|EFE81241.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 286

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 95/244 (38%), Gaps = 13/244 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            RN R +++ ++     +  +Q     + GV  +S A+    R   + L   ++     W
Sbjct: 18  SRNAR-FQQWEALLGNRKKRNQLREFLVQGVRPISLAVEYGWR--VRALLYDDSRKLSGW 74

Query: 84  DANLPHPFPVKTVP--PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ--LLMVLD 139
              +      + V   P+ + ++ G+++      +    + +  L+ +      L ++ D
Sbjct: 75  AREVLGAVEGERVALAPELMAEL-GEKSGGAPEVVAVVEVPADDLERIEAGPEFLGVLFD 133

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
               P NIG+I+RSA AF   G+I +   +        ++ +G+L  +P +R+ +  + +
Sbjct: 134 RPTSPGNIGSIIRSADAFGAHGMIVSGHAADVYDPKSVRATTGSLFSLPTVRVPSPAEVM 193

Query: 200 QKM---HSWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             +    + G   +           +        + L++G E  GL    +E       +
Sbjct: 194 AWVERRRAAGLPLVLVATDEKGDADVYDFDFTQPVLLLVGNETSGLAGAWREVCDVTVSI 253

Query: 255 HMPG 258
            M G
Sbjct: 254 PMAG 257


>gi|327481683|gb|AEA84993.1| rRNA methylase [Pseudomonas stutzeri DSM 4166]
          Length = 241

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 91/255 (35%), Gaps = 23/255 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWD 84
           D KK+     + ++ ++     + G H V      AL NP  +  +L  T       +  
Sbjct: 5   DIKKLH----QKKYRAEFGRFLVEGEHLVLELQKAALLNPLLQGSELYVT-------NAY 53

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                PF    +  + + +I       QG+     P+    + A    +  + L  + DP
Sbjct: 54  EQWQSPFKTHLISDRQMAQIADT-KTPQGIVALV-PMPGAPVAAPVAGERAIYLHEIQDP 111

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+   F     + +       +  + +S+ GA+ H P      L  AL  + +
Sbjct: 112 GNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPL----ELDVALDSLRT 167

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKAL 263
              +   L    + P++          + G E +G+         +    +   G I++L
Sbjct: 168 RFARIACLDMQGE-PVQSTAFTTFECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESL 226

Query: 264 NVSNAAAVALYITQN 278
           N++    +  Y    
Sbjct: 227 NLAATVNMCAYELSR 241


>gi|150025852|ref|YP_001296678.1| tRNA/rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772393|emb|CAL43873.1| Probable tRNA/rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 217

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIP 188
           R +   + ++ +   HN  A++RS   F    + +  +RY  S    +   A GA + + 
Sbjct: 29  RTNHFTIAVEDIFQMHNTSAVMRSCEVFGIQELNVIEERYGKSIDKEI---AMGAQKWVD 85

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
                ++T+ ++ + + G+Q I  +       LE    +   AL  G E  GL  +  + 
Sbjct: 86  INTFDSVTNCIESLKNKGYQIIATTPHENDCLLEDFDISKPSALFFGTERDGLSEEILKQ 145

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     + M G  ++LN+S +AA+ +
Sbjct: 146 ADGFLKIPMVGFTESLNISVSAAIII 171


>gi|327290181|ref|XP_003229802.1| PREDICTED: RNA methyltransferase-like protein 1-like [Anolis
           carolinensis]
          Length = 406

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 100/333 (30%), Gaps = 62/333 (18%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
           + E+     +  Y K     +   K+ +  +      +   + L G   +  AL   +  
Sbjct: 63  EEEQGPRESEPRYEKAGPGDKRLSKVVTLAKSRAFREKHGKILLEGRRLILDALEAGAAP 122

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLS 123
                ++   L  L   A       +  V  + +            + + + P    +  
Sbjct: 123 QTLFFSSTEHLKELP--AAKLRGASLIKVNSKDLKDWSDVVTSQGAIGIFSRPDHAKMTY 180

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P +       L ++ D++ DP N+G ILRSA    C  ++  K    +    + ++  GA
Sbjct: 181 PEVPEEHQLPLSLICDNIRDPGNLGTILRSAAGAGCSRVLLVKGCVDAWEPKVLRAGMGA 240

Query: 184 LEHIPYIRISNLTDALQKM------------HSWGFQT----------------IGLSSD 215
              +P +           +            H+ G QT                    S 
Sbjct: 241 HFRLPIVSNLEWDLVPNYLLPESCVYVADGSHAAGPQTDTGPPPPSPSKACSHGWVSRSS 300

Query: 216 SKKPLEQEIK---------NDKIA---------------LILGAEGKGLRPKTQETAT-- 249
             KP     +         ++K                 +++G E  G+  +    A   
Sbjct: 301 GLKPWADWDRDLDSQEEGEDEKTVEGQCCYDPWMDLSVAVVIGGETHGVSEEAMRLAQDT 360

Query: 250 --SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + +   + +LN + AA++ L+  +   
Sbjct: 361 GGRRLLIPIAPGVDSLNAAMAASILLFEAKRQL 393


>gi|317052474|ref|YP_004113590.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316947558|gb|ADU67034.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 248

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 111/263 (42%), Gaps = 32/263 (12%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK--------NAL 78
           +  Y+++    Q +R   + +   + G   V   L + S ++  L+++         NA+
Sbjct: 9   NPTYRQLLRLLQ-ARGIRKYQQALVSGEKIVRELLASGSPEVLALVSSSRHENIEGLNAV 67

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
           +RL  +  L     V            G +     L L           ++     + + 
Sbjct: 68  SRLVLEPELFRQLDV-----------CGTDFP---LVLVRCAQPVEWAGSLPVGTCVAL- 112

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
               DP N+G++LRS+VAF    I+  ++ +        ++++GA+ H  +     L D 
Sbjct: 113 -AFQDPENVGSVLRSSVAFGVRDILLLEQCASPFLPKAIRASAGAVFHCRFFAGPRLED- 170

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +  +   G Q + LS++  KPL + + +D   L+ G EG G+  + +E +     + M  
Sbjct: 171 IFHLPYPG-QIVSLSAEG-KPLAETVFSDPTMLVPGIEGAGIPARWREQS---VSIPMDA 225

Query: 259 IIKALNVSNAAAVALY-ITQNHF 280
            +++LN + A ++ LY + Q   
Sbjct: 226 GVESLNAAVATSIVLYHMAQRRR 248


>gi|71280430|ref|YP_267533.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71146170|gb|AAZ26643.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H]
          Length = 180

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 2/151 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++VLD+V + +NIGA +R A AF+ + +I     + S+   + K++    + +     
Sbjct: 29  PLIVVLDNVTNSYNIGAFIRLADAFAIEKVIVCGALTISD-KKMKKASRNEAKWVCVEYS 87

Query: 193 SNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            + T +LQ +   G     +          +     K  L+LG E KG+     + +   
Sbjct: 88  DSTTASLQTLLDEGHAIYSVELCHESVDYTKVTYPAKCVLVLGNERKGVSEAALKLSLQQ 147

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            H+ M G+  +LNVS A A+ L    N   K
Sbjct: 148 IHIPMFGMGNSLNVSTAGAIVLAECANQIRK 178


>gi|126663591|ref|ZP_01734588.1| spoU protein [Flavobacteria bacterium BAL38]
 gi|126624539|gb|EAZ95230.1| spoU protein [Flavobacteria bacterium BAL38]
          Length = 220

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R     + ++ V   HN  A++RS   F    +   ++        + K  A GA + + 
Sbjct: 31  RTKHFTIAMEDVFQLHNTSAVMRSCEVFGIQELNVVEQ---KFGKSIDKEIAMGAEKWVD 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             R S++ D +  +   G+Q I  +  +    L +       AL  G E  GL  +  + 
Sbjct: 88  INRFSSIQDCITNLKQKGYQIIATTPHNDSCLLHEFDITQPSALFFGTERDGLSEEVMQQ 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     + M G  ++LN+S +AA+ +
Sbjct: 148 ADGFLKIPMVGYTESLNISVSAAIII 173


>gi|16272372|ref|NP_438585.1| rRNA methylase [Haemophilus influenzae Rd KW20]
 gi|260580513|ref|ZP_05848341.1| rRNA methylase [Haemophilus influenzae RdAW]
 gi|1175994|sp|P44703|Y424_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0424
 gi|1573396|gb|AAC22080.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
 gi|260092855|gb|EEW76790.1| rRNA methylase [Haemophilus influenzae RdAW]
          Length = 351

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A        I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERPESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD  RN   L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   SA   + A G  E+I  +    +  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSAASMRVAEGGAEYIRVLEADYIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
            ++   G+Q I +S + +  PL++    +K+  +L +E      ++  T   + A L + 
Sbjct: 273 MQLRKSGYQIIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQARLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|149248194|ref|XP_001528484.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448438|gb|EDK42826.1| hypothetical protein LELG_01004 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 502

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 106/335 (31%), Gaps = 113/335 (33%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLL--------------------------------ATKN 76
            ++YG H V A L    R I  L                                  TKN
Sbjct: 167 EYVYGTHPVRAVLQARKRPILGLYNFKSDDRGIIKYAEKEYGVKCQTVRDKNALNILTKN 226

Query: 77  ALARLDWDANLPHPFP-----------VKTVPPQ----TIDKIVGK---------EAVHQ 112
            +         P   P           + T+  +     +++   K             Q
Sbjct: 227 GVHNGLVLKTKPLDIPYVTDIGSAENSIYTISVENELGELEQQTKKVFRAFAQNENQEEQ 286

Query: 113 GLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           G+ +E    ++ + +  R +      L + LD + DP NIG++LRSA  F  D +I    
Sbjct: 287 GMDIE---FVNKSGENERQNETELYPLALYLDEITDPQNIGSVLRSAYFFGVDFVIIPTH 343

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK---------- 217
            S     V  K+++GAL+ +   +       ++KM S G+  +  +              
Sbjct: 344 ASAKLGPVANKASAGALDLLDIYQTHQNMKLIEKMKSNGWSVVSTAGRPNISNDKLENGV 403

Query: 218 -----------------------------------KPLEQEIKNDKIALILGAEGKGLRP 242
                                                L+  ++   + L++G+EG+G+R 
Sbjct: 404 GNYQYRAEKNHHQQQQEQEQEEEEPLHLLNKFIELSDLKTVLRRTPLLLVIGSEGRGVRT 463

Query: 243 KTQETATSMAHLHMPG----IIKALNVSNAAAVAL 273
             +  +  M  +        ++ +LNV  A  V L
Sbjct: 464 NLKNKSDFMVSIPKLRVNDDVVDSLNVGVATGVVL 498


>gi|326800579|ref|YP_004318398.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
 gi|326551343|gb|ADZ79728.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobacterium sp. 21]
          Length = 176

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 65/160 (40%), Gaps = 3/160 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                +    + +VLD V   HN+G++ R++  F+ + I+            + K+A GA
Sbjct: 10  DEFKQLDKLPVTVVLDSVRSLHNVGSVFRTSDGFAVERILLCGITGTPPHRDIEKTALGA 69

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGL 240
            + + +    N+ +A+  +   G + I +  ++    L +   +  +  ALI G E  G+
Sbjct: 70  TQSVAWQYEKNIEEAIINLKQEGKKIIAIEQAEGSTMLHRFTPVLGESYALIFGNEVNGV 129

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  +       +   G   + NV  +A + L+      
Sbjct: 130 SEEAMKLIDYCVEIPQFGTKHSFNVVISAGIVLWDFYRKL 169


>gi|256372440|ref|YP_003110264.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009024|gb|ACU54591.1| tRNA/rRNA methyltransferase (SpoU) [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 232

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 8/228 (3%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L G   + AA+   +  + QL+    A+ R               V  + +  I     
Sbjct: 1   MLEGARFLRAAVAAGAH-VEQLVGVDEAIRREADLVASARSVV--VVTQRELAAISATT- 56

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF-SCDGIITTKRY 168
             QGL       ++  ++A+ +  +++ LD V DP N+G ++R+A A     G++     
Sbjct: 57  TPQGLV-GVLRRVTVPVEALEDRLVVLALDGVQDPGNVGTLVRTAAALSDAVGVLVGPGS 115

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   +   A++A+GALE +P   +  LT AL+++   G + IGL   +  PL    +  +
Sbjct: 116 ADPFNPKAARAAAGALERVPIAEVDELTPALRELRVRGARVIGLDPRAPSPL--APETQR 173

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             L++GAEG GL           A L +P  +++LN + A A+AL+++
Sbjct: 174 RVLVVGAEGAGLSAAVDGELDERAALVVPPRLESLNAAVAGALALWVS 221


>gi|195591559|ref|XP_002085507.1| GD12269 [Drosophila simulans]
 gi|194197516|gb|EDX11092.1| GD12269 [Drosophila simulans]
          Length = 407

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 99/294 (33%), Gaps = 28/294 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   + + + + G   +  AL    +    L + K+
Sbjct: 108 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKKQQIIVEGRRLIQEALQCGLKMEVLLFSQKD 167

Query: 77  ALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
            LA +  +   A L     +  VP   +            +A+   P        +    
Sbjct: 168 QLALVKEEVGVAQLETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQ 227

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   + +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 228 RLGSQPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 287

Query: 186 HIPY---IRISNLTDALQKMHSWGFQTIGLSS-----DSKKPLEQEIKNDKIA---LILG 234
            +P    +    L   +    +         S     ++ + ++        A   LI+G
Sbjct: 288 RVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGLGAHNLLIIG 347

Query: 235 AEGKGLRPKT---QETA---TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+  +     +         ++ +   I +LNV++A  + L+  +    +
Sbjct: 348 GESHGVSEEAYRFLKLVGGKGKCIYIPLAAGIDSLNVASALTLLLFELRRKLNQ 401


>gi|118100282|ref|XP_415864.2| PREDICTED: similar to RNA methyltransferase like 1 [Gallus gallus]
          Length = 407

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 96/319 (30%), Gaps = 61/319 (19%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           Y K     R   K+ +  +      +   + L G+  +  AL   +       +T   L 
Sbjct: 73  YEKASPGDRSLGKVVTIAKSRSFRDRHGKVLLEGLRLIRDALQAGAAPRALFFSTAEHLR 132

Query: 80  RLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
            L            V+    +    +V  + +   + + + P  +          ++++ 
Sbjct: 133 ELPPAPLKGARLVRVRFEDIKCWSDVVAPQGM---IGIFSKPDHAKMSYPTAQLPIVLIC 189

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D++ DP N+G ILRSA    C+ ++ TK         + ++  GA   +P +   +    
Sbjct: 190 DNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIVADLDWESV 249

Query: 199 LQKM-----------HSWGFQT-------------------------------------- 209
              +              G Q                                       
Sbjct: 250 PSNLPSGVQVCVADNKDLGAQAETEPTSQGAGRSGSHSGNPKAPVKPKRKAAPPEHKDEE 309

Query: 210 ----IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIK 261
               +  S  + +   +       A+++G E  GL P     A         + +   + 
Sbjct: 310 GTEGVCASELAAQYYYENWIQSPAAVVVGGETHGLSPDALHLAASTGGKRLVIPVVPGVD 369

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN + AAA+ L+  +   
Sbjct: 370 SLNSAVAAAIVLFEGKRQL 388


>gi|254362652|ref|ZP_04978739.1| RNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|153094271|gb|EDN75135.1| RNA methyltransferase [Mannheimia haemolytica PHL213]
          Length = 344

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 19/261 (7%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K ++N     +     +K+R     E + +YG +   +        I +L AT     +L
Sbjct: 85  KEKKNGPLSPRAPEKIKKNRL----EEMKVYGENACISLFQQRPESIVRLWATVEGAKKL 140

Query: 82  DWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLL 135
               +    H      +  + ++++ G E  H  + L        +L   L   +    L
Sbjct: 141 GDLMSYLAQHKKAYHVIDREEMERVTGTE-HHGDMCLLVKKTASFVLEGYLQVPKKQDCL 199

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD VN+  N+G I+R+   +   GIIT    S + S+  A+ A G LE +  +   N 
Sbjct: 200 VLLDGVNNAQNVGGIIRTCAFYGVKGIITENVDSLN-SSAAARVAEGGLEFVRALETKNK 258

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAH 253
             AL ++   G+Q + L+   + P L +    +K+  +L +E   +       A  +   
Sbjct: 259 HIALVQLRQAGYQIVHLTRHKQAPSLTKIKLAEKVVFVL-SE---IPASDVAYAEDTTIQ 314

Query: 254 LHMPGIIKA-LNVSNAAAVAL 273
           L     + + LNV+  A + L
Sbjct: 315 LSFNNPLNSGLNVAVNAGILL 335


>gi|313157998|gb|EFR57404.1| RNA methyltransferase, TrmH family [Alistipes sp. HGB5]
          Length = 178

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 3/160 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
              A+    + +VLD+V    N+GA  R+  AF+ + I      +   +  + K+A GA 
Sbjct: 16  EFAAMAKMPVTVVLDNVRSLQNVGAFFRTGDAFAVEHIALCGITAVPPNRDIHKTALGAE 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKIALILGAEGKGLR 241
             +P+         + ++H+ G++ + +   +    L+  +     K AL+ G E  G+ 
Sbjct: 76  LTVPWSYYETTEACIDRLHADGYEVLAVEQVEGAVMLDVFRAAPGVKYALVFGNEVMGVG 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +       +   G   ++NV+ +  V L+       
Sbjct: 136 QSAVDRCDGAIEIPQAGTKHSINVAVSGGVVLWSFFRRIG 175


>gi|145632669|ref|ZP_01788403.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|144986864|gb|EDJ93416.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
          Length = 351

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A     +  I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD       L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   S    + A G  E+I  +   ++  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSGASMRVAEGGAEYIRVLETDDIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I +S + +  PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 273 MHLRKSGYQIIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|103487534|ref|YP_617095.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
 gi|98977611|gb|ABF53762.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
          Length = 270

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 6/243 (2%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA---LARLD 82
           ++   K+M+   +K RH          G+   + A        +  L    A   LA+  
Sbjct: 12  SNPLVKRMRLLREK-RHRRAEGLFLAEGLRIATEAREAGVFPAWLFLGPDGAAHPLAQAL 70

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
               +     V       + K+ GK+     + +   P  +        + + +V + + 
Sbjct: 71  VADTMAAGGEVIDTTAAILSKLSGKDNPQTIVGIYAEPATTLAAIDRNAAPIWLVAERLR 130

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           DP N+G +LR+  A    G+I     +        +++ GA+     ++       L  +
Sbjct: 131 DPGNLGTMLRTGDAVGAGGLILLGDSTDPYGVEAVRASMGAIFTQRLVQAR-WDAFLPWL 189

Query: 203 HSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            S   + +     D     +         +++G E +GL       A     + M G   
Sbjct: 190 RSGQGELVATWLGDDSVDYQAVRYAAPTFILVGNESQGLPADYAAAADVRVKMPMLGKAD 249

Query: 262 ALN 264
           +LN
Sbjct: 250 SLN 252


>gi|149369726|ref|ZP_01889578.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
 gi|149357153|gb|EDM45708.1| tRNA/rRNA methyltransferase [unidentified eubacterium SCB49]
          Length = 179

 Score =  133 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             A   + L+++LD++   +NIG++ R+A AF  + I      +      + K+A GA E
Sbjct: 19  FKAATKTPLIIILDNIRSLNNIGSVFRTADAFLIEKIYLCGITATPPHKDIQKTALGATE 78

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPL--EQEIKNDKIALILGAEGKGLRP 242
            + +  + N  D +  + + G     +  ++    L   +  K+   A++ G E KG++ 
Sbjct: 79  SVAWEHVENTEDLIVSLKNEGVTICAIEQAEQSVSLEKYEVSKDKTYAVVFGNEVKGVQQ 138

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  +  +   G   +LN+S +  V ++
Sbjct: 139 TVVTESDVVIEIPQYGTKHSLNISVSTGVVVW 170


>gi|146283285|ref|YP_001173438.1| rRNA methylase [Pseudomonas stutzeri A1501]
 gi|145571490|gb|ABP80596.1| rRNA methylase [Pseudomonas stutzeri A1501]
          Length = 241

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 91/255 (35%), Gaps = 23/255 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWD 84
           D KK+     + ++ ++     + G H V      AL NP  +  +L  T       +  
Sbjct: 5   DIKKLH----QKKYRAEFGLFLVEGEHLVLELQKAALLNPLLQGSELYVT-------NAY 53

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                PF    +  + + +I       QG+     P+    + A    +  + L  + DP
Sbjct: 54  EQWQSPFKTHLISDRQMAQIADT-KTPQGIVALV-PMPDAPVSAPVAGERAIYLHEIQDP 111

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+   F     + +       +  + +S+ GA+ H P      L  AL  + +
Sbjct: 112 GNLGTILRTLAWFGNFRCLLSPGSVDPYNPKVVRSSMGAIFHAPM----ELDVALDSLRT 167

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKAL 263
              +   L    + P++          + G E +G+         +    +   G I++L
Sbjct: 168 RFARIACLDMQGE-PVQSTAFTTFECYLFGNEARGVPRDQLNALGARPFTIPGCGAIESL 226

Query: 264 NVSNAAAVALYITQN 278
           N++    +  Y    
Sbjct: 227 NLAATVNMCAYELSR 241


>gi|326336260|ref|ZP_08202431.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691434|gb|EGD33402.1| tRNA/rRNA methyltransferase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 221

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 4/166 (2%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G   +        + A R     + ++ +   HN  A++R+   F        ++     
Sbjct: 13  GFITQERKERFSQILAQRTQYFTVAIEDIFQMHNTSAVVRTCEVFGVQTTHIIEKK--YG 70

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIAL 231
             + +K A GA + +   R SN    ++++   G++ +      S  PLE    + K A 
Sbjct: 71  KRLDSKIAMGAEKWVTIKRYSNTQSCIEELKLQGYRIVATVPAPSAIPLEHFNIDAKSAF 130

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YIT 276
             G E  GL  +    A     + M G  ++LN+S + A+ L Y+T
Sbjct: 131 FFGTERDGLSQEVISQADEFLTIPMVGFTESLNISVSVAIILQYLT 176


>gi|89900788|ref|YP_523259.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
 gi|89345525|gb|ABD69728.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
          Length = 264

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 98/259 (37%), Gaps = 16/259 (6%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++   Q +    +    +  G H  +AAL         + +   +   L  
Sbjct: 11  SRDNAFLKDLRRLAQDNTGYRKQGRFWAEGEHLGAAALARHVTPAIGVFS--ESFWPLAP 68

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQ-GLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
                       +P      I G E+  Q G          P + A++     ++LD V 
Sbjct: 69  AKYAQAAIKSIVIPDSLFAAISGLESPAQMGFV-----FDLPLVAALQPVMASVILDRVQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    +I  K  +   S  + ++  GA   +  I    L D     
Sbjct: 124 DAGNVGSILRSASAFGFKQVIALKGTAALWSPKVLRAGMGAHWGLQLIEGVALADLALLA 183

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                  +  SS     L Q I N       A  LG EG+G+  + +  A     +  PG
Sbjct: 184 ----VPIVVTSSHRGSYLHQAIANQALPMPCAWALGHEGQGVSAELEALARLHVRIAQPG 239

Query: 259 IIKALNVSNAAAVALYITQ 277
             ++LNV+ AAA+ L+ + 
Sbjct: 240 GEESLNVAAAAAICLHASA 258


>gi|302773363|ref|XP_002970099.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii]
 gi|300162610|gb|EFJ29223.1| hypothetical protein SELMODRAFT_35012 [Selaginella moellendorffii]
          Length = 240

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 2/148 (1%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           V + +++  NI AI RSA AF    +      +      + ++  G    +     +   
Sbjct: 55  VAEALDNAGNIAAIFRSAEAFGFQSVHVITSLTVKGYKGVRRAHRGTERWLDVEVWNCAK 114

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           D +Q + S G++    S       + +       A+I G E +G    +   A  +  + 
Sbjct: 115 DCIQALRSRGYRIAVTSTGHDTVSICEMDWTIPTAVIFGNEHEGASDYSTSEADILCGIP 174

Query: 256 MPGIIKALNVSNAAAVAL-YITQNHFAK 282
           M G++ +LNVS AA + + +   +  A+
Sbjct: 175 MFGMVDSLNVSVAAGILMRHAVCDRIAR 202


>gi|332293439|ref|YP_004432048.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171525|gb|AEE20780.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 165

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 3/151 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N ++++V +H+  P N G+I R A AF    II       + S+ L K+A    + IP+ 
Sbjct: 14  NKEIILVCEHMTSPANAGSIFRLADAFGVKEIIFCGNQPDTRSSRLRKTARNTEKTIPFR 73

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET 247
               + + LQ++H   F +I L  + + KP+     +  DK+ALI+GAE  G+  +T E 
Sbjct: 74  VSDTIKNTLQELHDLSFTSIALEITSNSKPMSTVDFSRLDKVALIIGAENIGITDETLEQ 133

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             ++AH+ M GI  ++NV+ A  +ALY    
Sbjct: 134 CNNIAHITMYGINSSMNVAQATGIALYELTR 164


>gi|159490732|ref|XP_001703327.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
 gi|28207743|gb|AAO32614.1| CR004 protein [Chlamydomonas reinhardtii]
 gi|158280251|gb|EDP06009.1| RNA methylase-like protein CR004 [Chlamydomonas reinhardtii]
          Length = 316

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 2/170 (1%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            ALE        + A R   +L +++ + D  N+ A+ R+A A     +    + +  + 
Sbjct: 72  FALEERVKRIEEVVAKRTFTVLPIVEGLYDMGNLAAVCRTADALGYGAVHAVNK-ADGKF 130

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALI 232
            +  ++A+GA + +      +  + L  M + G+Q +      S   +++       A++
Sbjct: 131 KMSQRTAAGADKWLDVKAWDSTGECLAAMKAAGYQIVTTHLTQSSITIQEVDWTRPTAVV 190

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LG E  G+  +    A + A + M G++++ N+S A A+ LY  Q    +
Sbjct: 191 LGNEKFGVSAEAVAAADACAIIPMTGMVESFNISVANALILYEAQQQRIR 240


>gi|225011630|ref|ZP_03702068.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
 gi|225004133|gb|EEG42105.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-2A]
          Length = 239

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 92/255 (36%), Gaps = 25/255 (9%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++ +K     ++ ++          G   +   L+     ++               +  
Sbjct: 4   KNQRKQILQLKQKKYRLSTGLFVAEGEKVIEELLSASWDCVY-------------LFSIA 50

Query: 88  PHPFPVKTV-PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
           PH  P   V  P  + ++   +     L +      SP L A+  S + + +D V+DP N
Sbjct: 51  PHFHPQSEVIDPSVMKQLTHFKTPSPVLGV----FKSPDLKALSKSNITLAVDGVSDPGN 106

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +G ++R    +    +I +       ++ + +++ G++  +    + +L   L  ++   
Sbjct: 107 LGTLIRICDWYGLSDLICSSNTVDCYNSKVVQASMGSIVRVQCHYVDDLHSTLINLNK-- 164

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---GIIKAL 263
               G   +  + L +    ++ + + G+E  GL     +       +         ++L
Sbjct: 165 -PIYGADLNG-QSLYKTDFEEQASFVFGSESHGLSAAVSKIINHKITIPNFRSGRGAESL 222

Query: 264 NVSNAAAVALYITQN 278
           NV+ A A+ L     
Sbjct: 223 NVAVAGAIFLSEIFR 237


>gi|169606800|ref|XP_001796820.1| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
 gi|160707082|gb|EAT86280.2| hypothetical protein SNOG_06449 [Phaeosphaeria nodorum SN15]
          Length = 283

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 92/260 (35%), Gaps = 71/260 (27%)

Query: 94  KTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVR--------------------- 130
           + V  + +  +        H GL LE++PL  P +  ++                     
Sbjct: 14  EEVGDEYLRAMDKASSGRPHNGLVLESSPLPVPPITELKAVSISDETFGVTVDSQSAEDV 73

Query: 131 ----------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                              L++ +D V D  N+GAI RSA     D ++T  R +   S 
Sbjct: 74  LVNGKQETYSYKSAGWRQPLILYVDGVLDEGNLGAIARSAYFLGVDAVVTPTRQTAPWSH 133

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG---------LSSDSKKPLEQEIK 225
           +  K+++GA E +P  ++    D L K    G++             S + ++P  + + 
Sbjct: 134 IAVKASAGAAEAVPLFKVGEPADFLGKSSRAGWRIYASDAIPPPPVTSGEKEEPSSKIVY 193

Query: 226 N-----------------DKIALILGAEGKGLRPKTQETATSMAHLHMPG-----IIKAL 263
           +                     L++GAEG GLR      A     +          + +L
Sbjct: 194 SVARSTKRLPSDHCPVAEHPTILMMGAEGTGLRDSLLNLAHYKVGIKHGREVDEIGVDSL 253

Query: 264 NVSNAAAVALYI-TQNHFAK 282
           NVS AA++  Y   Q   AK
Sbjct: 254 NVSVAASILSYEMLQKPIAK 273


>gi|17945288|gb|AAL48701.1| RE14730p [Drosophila melanogaster]
          Length = 386

 Score =  132 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 96/295 (32%), Gaps = 34/295 (11%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    L + K+
Sbjct: 87  NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEVLLFSQKD 146

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
            LA +  +  +        +  VP   +            +A+   P        +    
Sbjct: 147 QLALVKEEVGVAQVETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQ 206

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   + +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 207 RLGSQPFPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 266

Query: 186 HIPY---IRISNLTDAL--QKMHSWGFQTIGLSS---DSKKPLEQEIKNDKIA---LILG 234
            +P    +    L   +  +            +    ++ + ++        A   LI+G
Sbjct: 267 RVPIRDDVTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGLGAHNLLIIG 326

Query: 235 AEGKGLRPKT---------QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +          +       ++ +   I +LNV++A  + L+  +   
Sbjct: 327 GESHGVSEEAYRFLNLVGGKGKC---IYIPLAAGIDSLNVASALTLLLFELRRKL 378


>gi|240949299|ref|ZP_04753642.1| predicted rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240296250|gb|EER46899.1| predicted rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 332

 Score =  132 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 17/277 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           S + S KI     S+  K ++      +     +K+R     E + +YG ++  A     
Sbjct: 56  SGQGSVKIQVKGSSNLQKEKKTGPLSPRAPEKIKKNR----AEEMKVYGENSCLAVFQQR 111

Query: 65  SRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121
              I +L AT     +L    +    H      V  + ++K+ G E  H  + L      
Sbjct: 112 PESIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVSREEMEKVTGTE-HHGDVCLLIKKAP 170

Query: 122 ---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              L   L   R    L++LD+VN+  N+G I+R+   +   GIIT +      S+  A+
Sbjct: 171 VFSLEGYLQIARARDCLVLLDNVNNAQNVGGIIRTCAFYGVKGIIT-ESNDRLNSSAAAR 229

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEG 237
            A G LE +  +   +   ALQ++ + G+Q I L+   + P L +    +K+  +L +E 
Sbjct: 230 VAEGGLEFVHALETKHKQIALQQLRNAGYQIIHLTRQKQAPTLTKIALAEKVVFVL-SEI 288

Query: 238 KGLRPKTQETATSMAHLHMPGII-KALNVSNAAAVAL 273
             +  + + +      L +   +  +LNV+  A + L
Sbjct: 289 --VSNEIEFSEDITVQLSVTNPLSSSLNVAVNAGILL 323


>gi|190149477|ref|YP_001968002.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262796|ref|ZP_07544423.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914608|gb|ACE60860.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871941|gb|EFN03658.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 345

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 15/241 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
             ++ E + +YG +   A        I +L AT     +L    +    H      V   
Sbjct: 102 KKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVDRA 161

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            ++++ G E  H  + L         L   L   R    L++LD VN+  N+G I+R+  
Sbjct: 162 EMERVTGTE-HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCA 220

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            +  +G+I         S+  A+ A G LE +  +   N   AL ++ + G+Q + L+ +
Sbjct: 221 FYGVNGVIVESA-DTLNSSAAARVAEGGLEFVRPLETKNKQIALTQLRNAGYQVVHLTRN 279

Query: 216 S-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAVA 272
               PL +     K   +L +E   +  +  E    +   L     + + LNV+ +  + 
Sbjct: 280 KQAAPLAKTKLAAKTVFVL-SE---IPAQDIEYPEDTTVQLSFENPLNSGLNVAVSTGIL 335

Query: 273 L 273
           L
Sbjct: 336 L 336


>gi|325270980|ref|ZP_08137567.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324986777|gb|EGC18773.1| TrmH family RNA methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 242

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 32/249 (12%)

Query: 40  SRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN---LPHPFPVKT 95
           +R   +   LF+  G   V+  L+            +  L  LD       L HP PV  
Sbjct: 15  TRKGREKAGLFVAEGPKIVNDLLHEG-------FVAEEILDNLDDIRKVSFLKHPQPVLG 67

Query: 96  VPP-QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           V      D+             ET P  S       +++L++ LD V DP N+G I+R A
Sbjct: 68  VFRLPAADR-------------ETPPAYSDIFRQYLDNRLVLALDGVQDPGNLGTIIRIA 114

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F  + I  ++  +   +  + ++  G++  +    + NL    + +    +       
Sbjct: 115 DWFGIENIFCSQETADCWNPKVVQATMGSIARVKLHYL-NLNRLTEGLP-ADYPVYATLL 172

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAA 270
           D    L +   + +  +++G EG G+ P  +        +          ++LNV+ A +
Sbjct: 173 DG-DSLYEYPLSKQGMIVMGNEGNGITPMLRSKINRKLLIPNYPPGRKTAESLNVAIATS 231

Query: 271 VALYITQNH 279
           +     +  
Sbjct: 232 IVCAEFRRR 240


>gi|32034434|ref|ZP_00134616.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207693|ref|YP_001052918.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae L20]
 gi|303250729|ref|ZP_07336925.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252028|ref|ZP_07338199.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245018|ref|ZP_07527115.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247192|ref|ZP_07529243.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307251737|ref|ZP_07533641.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307253971|ref|ZP_07535823.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307256232|ref|ZP_07538019.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|307258426|ref|ZP_07540167.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|126096485|gb|ABN73313.1| predicted rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302649458|gb|EFL79643.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650399|gb|EFL80559.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854183|gb|EFM86391.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856330|gb|EFM88482.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306860823|gb|EFM92832.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306863175|gb|EFM95117.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306865413|gb|EFM97309.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306867610|gb|EFM99457.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 345

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 15/241 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
             ++ E + +YG +   A        I +L AT     +L    +    H      V   
Sbjct: 102 KKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVDRA 161

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            ++++ G E  H  + L         L   L   R    L++LD VN+  N+G I+R+  
Sbjct: 162 EMERVTGTE-HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCA 220

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            +  +G+I         S+  A+ A G LE +  +   N   AL ++ + G+Q + L+ +
Sbjct: 221 FYGVNGVIVESA-DTLNSSAAARVAEGGLEFVRPLETKNKQIALTQLRNAGYQVVHLTRN 279

Query: 216 S-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAVA 272
               PL +     K   +L +E   +  +  E    +   L     + + LNV+ +  + 
Sbjct: 280 KQAAPLAKTKLAAKTVFVL-SE---IPAQDIEYPEDTTVQLSFENPLNSGLNVAVSTGIL 335

Query: 273 L 273
           L
Sbjct: 336 L 336


>gi|327314524|ref|YP_004329961.1| TrmH family RNA methyltransferase [Prevotella denticola F0289]
 gi|326944905|gb|AEA20790.1| RNA methyltransferase, TrmH family [Prevotella denticola F0289]
          Length = 242

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 88/256 (34%), Gaps = 23/256 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++  K+    +  +   +       G   VS  L +      ++L     + ++ +  + 
Sbjct: 4   KNRTKLIRSLETKKGREKAGLFVAEGPKVVSDLL-HGGFLAEEVLEDIEDIRKVSFLKHP 62

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                +  +P +               A ET+   S T       QL++ LD V DP N+
Sbjct: 63  QSVLGIFKMPEE---------------ADETSKDYSKTFHEHIEGQLVLALDGVQDPGNL 107

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  F  D I  +   +   +  + ++  G++  +    +              +
Sbjct: 108 GTIIRIADWFGIDDIFCSHETADCWNPKVVQATMGSIARVKLHYLDLNLLIDNLPID--Y 165

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI--IKAL 263
                  D K    Q +    + +++G EG G+ P  +        +     G    ++L
Sbjct: 166 PVYATLLDGKDLYTQPLTAHGM-IVMGNEGNGITPLLRTKINRKLLIPNYHAGREAAESL 224

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A ++     +  
Sbjct: 225 NVAVATSIVCAEFRRR 240


>gi|295133953|ref|YP_003584629.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294981968|gb|ADF52433.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 217

 Score =  132 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 4/158 (2%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
               L+   +D  R + + +    V   HN  A++RS   F    I   +   P    + 
Sbjct: 17  RRKSLIKKVIDQ-RTNHITVATQDVYQLHNTSAVIRSCDVFGIQNIHVIEEKFP--KRID 73

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGA 235
            + A GA + +   R ++  + +  +   G+Q +  S       L       K AL  G 
Sbjct: 74  REIAMGAQKWVSVNRHASAKECISHVREMGYQIVATSPHDDSLHLGDFDITKKSALFFGT 133

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  GL  +  + A     + M G  ++LN+S +AA+ L
Sbjct: 134 ERYGLSQEIIDEADCTLKIPMYGFTESLNISVSAAIIL 171


>gi|223041927|ref|ZP_03612112.1| predicted rRNA methyltransferase [Actinobacillus minor 202]
 gi|223017281|gb|EEF15708.1| predicted rRNA methyltransferase [Actinobacillus minor 202]
          Length = 334

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 116/277 (41%), Gaps = 17/277 (6%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           S + S KI     S   K ++      +     +K+R     E + +YG ++  A     
Sbjct: 58  SGQGSVKIHVKGHSSLQKEKKTGPLSPRAPEKIKKNR----AEEMRVYGENSCLAVFQQR 113

Query: 65  SRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL- 121
              I +L AT     +L    +    H      V  + ++K+ G E  H  + L      
Sbjct: 114 PESIVRLWATVEGAKKLGDMLSYLAEHKKAYHVVSREEMEKVTGTE-HHGDVCLLVKKSP 172

Query: 122 ---LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
              L   L   R    L++LD+VN+  N+G ++R+   +   GIIT +      S+  A+
Sbjct: 173 VFSLEGYLQITRARDCLVLLDNVNNAQNVGGVIRTCAFYGVKGIIT-ESSDRLNSSAAAR 231

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEG 237
            A G LE +  +   +   ALQ++ + G+Q I L+   + P L +    +K+  +L +E 
Sbjct: 232 VAEGGLEFVHALETKHKQIALQQLRNAGYQIIHLTRQKQVPTLTKIALAEKVVFVL-SEI 290

Query: 238 KGLRPKTQETATSMAHLHMPGII-KALNVSNAAAVAL 273
             +  + + +      L +   +  +LNV+  A + L
Sbjct: 291 --VSNEIEFSEDVTVQLSVANPLSSSLNVAVNAGILL 325


>gi|195020532|ref|XP_001985214.1| GH16936 [Drosophila grimshawi]
 gi|193898696|gb|EDV97562.1| GH16936 [Drosophila grimshawi]
          Length = 410

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 90/292 (30%), Gaps = 29/292 (9%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   + + + + G   +  AL    R      + K+
Sbjct: 115 NLEFTRLTLQDPLMSTLLTEVRSRKRRDKNKQIIIEGRRLIEEALECGLRMHALFFSQKD 174

Query: 77  ALARLDW---DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDA----V 129
            L  L      A   H   +  VP   +            LAL   P     L       
Sbjct: 175 QLGLLREPVAQAQQEHNTMIYKVPQHDLKTWSALVTPPGLLALFERPSARGLLQQQQLGS 234

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               + +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G    +P 
Sbjct: 235 EPLPITVVCDNIREPNNLGSIIRTCAALPCTQVVVTHGCCDPWESKALRGGCGGQFRLPI 294

Query: 190 IRISNLTDAL-----QKMHSWGFQTIG------LSSDSKKPLEQEIKNDKI----ALILG 234
                          +                  S + +  ++      K+     LI+G
Sbjct: 295 RDDVTWEQLALHIPPEAAEDCHVFIAENNPEKRTSQEGRTTVDYAEL-GKVGAHNILIIG 353

Query: 235 AEGKGLRPKTQETAT------SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+                  ++ +   I +LNV++A  + L+  +   
Sbjct: 354 GESHGVSEDAYRFMHLVGSRGKCVYIPLAMGIDSLNVASALTLILFELRRKL 405


>gi|168061044|ref|XP_001782501.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665986|gb|EDQ52653.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 222

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 1/151 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   + + ++ + +  NI A+ RSA A     +      +        K + G+   +
Sbjct: 43  ANRTYSVCIAVEGLLELGNISAVFRSADALGFQSVHVISTETKKRYKKNRKVSRGSETWL 102

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 N +D +  +   G++      + +   ++        A+I G E KG   +  +
Sbjct: 103 DAEMWENSSDCIATLRKRGYRIAVTHIAPNTVSIQDMDWTIPTAVIFGNEYKGASEEAVK 162

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +     + M G++++ NVS AA + ++   
Sbjct: 163 QSDIRCCIPMGGMVESFNVSVAAGIIMHHAA 193


>gi|303283456|ref|XP_003061019.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457370|gb|EEH54669.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 219

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 4/162 (2%)

Query: 118 TAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            +P     LDAV   R+  +L +L+   D  N+ A+ RS  A     +            
Sbjct: 30  ISPDRLARLDAVVEQRSFDILPILEGAYDIGNVLAVCRSTEALGIGTLGVVSDTGLKFKQ 89

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
              +++ GA++     +  +  DA++     G++ +    +   PLE        A+ILG
Sbjct: 90  S-GRTSGGAVKWTHLQQWRSTADAVRDAKKRGYRVLTTVFEGGHPLEHYDWTVPTAVILG 148

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            E +G+  + ++ A    ++ M G  ++LNVS A+++ ++  
Sbjct: 149 NEREGVSEEAKKLADGGVYVSMNGFTESLNVSVASSLVMHHA 190


>gi|148825296|ref|YP_001290049.1| rRNA methylase [Haemophilus influenzae PittEE]
 gi|148715456|gb|ABQ97666.1| rRNA methylase [Haemophilus influenzae PittEE]
          Length = 234

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 15/232 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG +   A        I +L AT     ++    +    +      V  + + ++ G E
Sbjct: 3   VYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVDSEELARVSGTE 62

Query: 109 AVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             H G+ L         L   LD  RN   L++LD+VN+  NIG +LR+   F    I+ 
Sbjct: 63  -HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVA 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQE 223
               +   SA   + A G  E+I  +   ++  AL ++   G+Q I +S + +  PL++ 
Sbjct: 122 DNVEN-LYSAASMRVAEGGAEYIRVLETDDIDSALMQLRKSGYQVIHVSHNKQGDPLDKV 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAVAL 273
              +K+  +L +E      ++  T   +   L +   IK+ LN++  A V L
Sbjct: 181 RLKNKVVFVL-SES---STESLATPEDTQVRLTLASPIKSGLNIAVNAGVLL 228


>gi|145640385|ref|ZP_01795969.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae R3021]
 gi|145274971|gb|EDK14833.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 22.4-21]
          Length = 351

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 20/257 (7%)

Query: 31  KKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           K+ ++     R       ++ E + +YG +   A     +  I +L AT     ++    
Sbjct: 95  KEKKTGALSPRAPEKIKKNRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVL 154

Query: 86  N--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLD 139
           +    +      V  + + ++ G E  H G+ L         L   LD  RN   L++LD
Sbjct: 155 SYLAENKKAYHVVDSEELARVSGTE-HHAGICLLVKKPRAFTLQGYLDIPRNEDCLVLLD 213

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +VN+  NIG +LR+   F    I+     +   S    + A G  E+I  +    +  AL
Sbjct: 214 NVNNAQNIGGVLRTCAYFGVKNIVADNVEN-LYSGASMRVAEGGAEYIRVLETDYIDSAL 272

Query: 200 QKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMP 257
             +   G+Q I +S + +  PL++    +K+  +L +E      ++  T   +   L + 
Sbjct: 273 MHLRKSGYQVIHVSHNKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLA 328

Query: 258 GIIKA-LNVSNAAAVAL 273
             IK+ LN++  A V L
Sbjct: 329 SPIKSGLNIAVNAGVLL 345


>gi|307260664|ref|ZP_07542356.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869741|gb|EFN01526.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 346

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
             ++ E + +YG +   A        I +L AT     +L    +    H      V   
Sbjct: 102 KKNRAEEMKVYGENACLALFKQRPDAIVRLWATIEGAKKLGDMLSYLAEHKKAYHVVDRA 161

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            ++++ G E  H  + L         L   L   R    L++LD VN+  N+G I+R+  
Sbjct: 162 EMERVTGTEQHHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCA 221

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            +    +I         S+  A+ A G LE +  +   +   AL ++ + G+Q + L+ +
Sbjct: 222 FYGVSRVIVESA-DTLNSSAAARVAEGGLEFVRPLETKHKQIALTQLRNAGYQVVHLTRN 280

Query: 216 S-KKPLEQEIKNDKIALILGAE--GKGLR-PKTQETATSMAHLHMPGIIKA-LNVSNAAA 270
                L +     K   +L +E   +G+  P+      +   L     + + LNV+ +A 
Sbjct: 281 KQAASLAKTKLAAKTVFVL-SEIPAQGVEYPE-----DTTVQLSFENPLNSGLNVAVSAG 334

Query: 271 VAL 273
           + L
Sbjct: 335 IVL 337


>gi|332292385|ref|YP_004430994.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170471|gb|AEE19726.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 178

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 73/153 (47%), Gaps = 3/153 (1%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                  + +++VLD++   +N+G++ R++ AF  + I      +      + K+A GA 
Sbjct: 17  DFKEAEKTPIIIVLDNIRSLNNVGSVFRTSDAFLVEKIYLCGITATPPHRDIQKTALGAT 76

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLR 241
           + + +  + +    ++K+   G     +  ++    L++ +    +K A++ G E KG++
Sbjct: 77  DAVTWEYVEDSIALVRKLKEDGVHVCAIEQAEGAVMLDKFVPTTGEKYAVVFGNEVKGVQ 136

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            +    + ++  +   G   +LN+S +A V ++
Sbjct: 137 QEIVSLSNTVIEIPQVGTKHSLNISVSAGVVIW 169


>gi|315187484|gb|EFU21240.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 265

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           +D+++G       L    +P     L    +  + + L+ +  P+N+GAI RSA AF   
Sbjct: 89  LDELLGTWTADWDL----SPEPRGELPPRTSLPIWVYLEDLRSPYNVGAIFRSAEAFGAS 144

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           GI  +      +    A++A G    +P+ R+     A  ++ S G   I L +    P+
Sbjct: 145 GIYLSPATPTPDHPRAARTARGTQHLLPWRRL-----APDQVGSLGLPVIVLETRG-TPV 198

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETA---TSMAHLHMPGIIKALNVSNAAAVAL-YIT 276
           ++    ++  +++G E  G+ P+    A        + + G   +LNVS AA + L Y +
Sbjct: 199 DEYTFPEQGIVVVGNEELGVSPELLALAESSQGRVSIPLVGTKGSLNVSVAAGILLCYWS 258

Query: 277 Q 277
           +
Sbjct: 259 R 259


>gi|269218564|ref|ZP_06162418.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211675|gb|EEZ78015.1| putative 23S rRNA methyltransferase [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 281

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 105/288 (36%), Gaps = 40/288 (13%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
             K++  ++L+R  R +++     Q+SRH        + G   V   L   S     L  
Sbjct: 4   RTKEATRSQLQRAQRLHRR----EQRSRH----GQTLVEGPQAVRELLACASGLARDLYV 55

Query: 74  TKNALARLDWDANLPHPFPV--KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV-R 130
           T+ A+ R    A L     V    +  Q +  +       QG+    +   +P L+++  
Sbjct: 56  TEEAIERHGDVAELASAAGVWTHVLAAQDMRDLSADA---QGVVAVISTPEAPGLNSLLG 112

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L++    + DP N+G I+R+A A   D +   K  +   S  + +SA+G+  H+P +
Sbjct: 113 EASLVVATLDIADPGNLGTIIRTADAAGADAVAVGKASAELYSPKVMRSAAGSHFHVPCV 172

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPL-----------------EQEIKNDKIALIL 233
                ++   +    G Q +      +  L                        +    +
Sbjct: 173 AGVEASELAARAREAGLQVLTAEGTGEWELPVLIREAAEARILGAAPSGPDLRRRTLWFV 232

Query: 234 GAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYITQ 277
           G E +G                  + + G  ++LNVS A AV  Y + 
Sbjct: 233 GNEARG-----FAGCDFDVDARVAVPLYGKAESLNVSTALAVCAYASA 275


>gi|257456092|ref|ZP_05621295.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
 gi|257446550|gb|EEV21590.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
          Length = 271

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 94/238 (39%), Gaps = 18/238 (7%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           + G   V A       KI +L    +      A   + A     + +       ++K+ G
Sbjct: 23  VCGFEAVKALAAEHPEKISRLFFAGSRARTFGALCKYLAQRKRLYRL-VQSDAELEKLCG 81

Query: 107 KEAVHQGLALETAP--LLSPTLDAVRN----SQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
               HQG+        + + T + ++        +++ D + + +N+GA++RSA  F  +
Sbjct: 82  S-VHHQGVVAMIEEPCIAAVTPERIKQWEAGKAAVLLCDRIGNANNLGAVIRSAAFFGIE 140

Query: 161 GIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP 219
            I+ +   +    +    + A G +E I      +    L+    +  + +G    + + 
Sbjct: 141 HIVISGEDAQAQLTPSAYRIAQGGMEFITLYTAPSAEHFLKACSGYLMR-LGADHRAYRS 199

Query: 220 LEQEI----KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L+        ++ + ++LG E  G+  + ++    +  +   G I++LNV+ A  +  
Sbjct: 200 LKDIPSLVRADEAVVVVLGNEEHGISAEAKKLCDVLVKISGSGAIESLNVAQAGTLFC 257


>gi|326437534|gb|EGD83104.1| hypothetical protein PTSG_12070 [Salpingoeca sp. ATCC 50818]
          Length = 717

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 71/184 (38%), Gaps = 18/184 (9%)

Query: 115 ALETAPLLSPT-------LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
             +  PL++P        +   R   L  V++ ++D  NI AI R+  AF      T +R
Sbjct: 6   VAQLRPLVTPERFSRAIAVARGRVQGLACVIEGLHDTGNISAIQRTCDAFGVHDFHTIRR 65

Query: 168 YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI--GLSSDSK------KP 219
           +           + GA + +   R  +  D +  +   G++     ++ DS         
Sbjct: 66  FPMDRMKQHRHVSKGADKWLRVHRWGSTGDCMAHLRQHGYRIAVTAVADDSSSNHASVTD 125

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT--- 276
           L     +   A + G E  G+  +  E A  +  + + G + ALNVS AA   L+     
Sbjct: 126 LHALELDQPTAFVFGNEVAGISTQALEEADVLVQIPLVGFVSALNVSVAAGCVLHHATLQ 185

Query: 277 QNHF 280
           +  F
Sbjct: 186 RRRF 189


>gi|298372920|ref|ZP_06982910.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275824|gb|EFI17375.1| RNA methyltransferase, TrmH family [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 253

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 87/247 (35%), Gaps = 15/247 (6%)

Query: 39  KSRHTSQPENLFL-YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP 97
           K +      N+F+  G   +       S +   L++T  +   L W  +      V ++ 
Sbjct: 14  KYKKFRDSYNMFVAEGEKLIMDL--AMSFRCKYLISTDES---LLWSIDAEERIKVDSIG 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVA 156
              + +I       + LA+         +   +   +L++ +D V D  N+G I R A  
Sbjct: 69  --ELKRISSLTTPSKLLAVFYKADYESVISMSQLRGELVLAIDSVQDTGNLGTIARIADW 126

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           +    I+ +       +    ++  GAL ++     +NL   L +         G     
Sbjct: 127 YGIGHIVCSHGTVDVYNPKCVQATMGALANVSVCY-TNLFQFLSEAQECNIPVYGTFLTG 185

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP----GIIKALNVSNAAAVA 272
                + + N  I ++LG EG+G+        T    +          ++LNV+ A AV 
Sbjct: 186 DNIYHRSLSNSGI-ILLGNEGQGISDSIAGLVTDRITIPHFSASQHRSESLNVAIATAVV 244

Query: 273 LYITQNH 279
               +  
Sbjct: 245 CSEFRRR 251


>gi|228472383|ref|ZP_04057148.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228276251|gb|EEK14986.1| SpoU protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 220

 Score =  131 bits (331), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 6/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSESAVLAKSASGALEHIP 188
           R     + ++ +   HN  A++R+   F      I  ++Y      + +K A GA + + 
Sbjct: 31  RTEHFTVAIEDLFQVHNTSAVVRTCEVFGVQTAHIIEEKYG---KRLDSKIAMGAEKWVT 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            IR  +    ++ +   G++ +         PL++     K A   G E  GL  +    
Sbjct: 88  TIRYPHTQPCIEALRGQGYRIVATVPPPGATPLQEFDITPKSAFFFGTERDGLSQEVISQ 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL-YITQN 278
           A     + M G  ++LN+S + A+ L Y+T  
Sbjct: 148 ADECLTIPMVGFTESLNISVSVAIILQYVTAK 179


>gi|24666840|ref|NP_649130.2| CG14100 [Drosophila melanogaster]
 gi|74871275|sp|Q9VW14|RMTL1_DROME RecName: Full=RNA methyltransferase-like protein 1 homolog
 gi|7293773|gb|AAF49141.1| CG14100 [Drosophila melanogaster]
          Length = 407

 Score =  131 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 96/295 (32%), Gaps = 34/295 (11%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    L + K+
Sbjct: 108 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEVLLFSQKD 167

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
            LA +  +  +        +  VP   +            +A+   P        +    
Sbjct: 168 QLALVKEEVGVAQVETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLEKNLAEQQ 227

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   + +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 228 RLGSQPFPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 287

Query: 186 HIPY---IRISNLTDAL--QKMHSWGFQTIGLSS---DSKKPLEQEIKNDKIA---LILG 234
            +P    +    L   +  +            +    ++ + ++        A   LI+G
Sbjct: 288 RVPIRDDVTWDELALTIPPEAADDCHVFIAETNQRKRENNQTIDYADIKGLGAHNLLIIG 347

Query: 235 AEGKGLRPKT---------QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E  G+  +          +       ++ +   I +LNV++A  + L+  +   
Sbjct: 348 GESHGVSEEAYRFLNLVGGKGKC---IYIPLAAGIDSLNVASALTLLLFELRRKL 399


>gi|261496523|ref|ZP_05992903.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307726|gb|EEY09049.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 344

 Score =  131 bits (331), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 19/261 (7%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           K ++N     +     +K+R     E + +YG +   +        I +L AT     +L
Sbjct: 85  KEKKNGPLSPRAPEKIKKNRL----EEMKVYGENACISLFQQRPGSIVRLWATVEGAKKL 140

Query: 82  DWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLL 135
               +    H      +  + ++++ G E  H  + L        +L   L   +    L
Sbjct: 141 GDLMSYLAQHKKAYHVIDREEMERVTGTE-HHGDMCLLVKKTASFVLEGYLQVPKKQDCL 199

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD VN+  N+G I+R+   +   GIIT    S + S+  A+ A G LE +  +   N 
Sbjct: 200 VLLDGVNNAQNVGGIIRTCAFYGVKGIITENVDSLN-SSSAARVAEGGLEFVRALETKNK 258

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAH 253
             AL ++   G+Q + L+   + P L +    +K+  +L +E   +       A  +   
Sbjct: 259 HIALVQLRQAGYQIVHLTRHKQAPSLTKIKLAEKVVFVL-SE---IPASDVAYAEDTTIQ 314

Query: 254 LHMPGIIKA-LNVSNAAAVAL 273
           L     + + LNV+  A + L
Sbjct: 315 LSFNNPLNSGLNVAVNAGILL 335


>gi|326797288|ref|YP_004315108.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
 gi|326548052|gb|ADZ93272.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas mediterranea MMB-1]
          Length = 256

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSA----ALNNPSRKIFQLLATKNALARLDWDAN 86
           KK+     + ++  +  +  + G H V      A NNP+    +L  T    A  DW   
Sbjct: 23  KKLH----QKKYRQELGHCLVEGEHLVLELEKAAQNNPALNASKLYVTP---AYQDWSTR 75

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV-LDHVNDPH 145
                  + V  + +  I G     QG+           +   +N+ L  V L  + DP 
Sbjct: 76  FEK----QDVTERQMATIAGT-KTPQGILAVV---PMAAIQPEQNNTLAAVYLHEIQDPG 127

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ILRS   F     + +       +  + +S+ GA+ H+P     ++    ++    
Sbjct: 128 NLGTILRSLAWFGGVRCLLSPGSVDPFNPKVIRSSMGAVFHVPMELDVSIDTLPERFAKI 187

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKALN 264
           G     L  D + PL           I G E +G+     E   +    +   G+I++LN
Sbjct: 188 G----CLDMDGE-PLSSPEFKACDCYIFGNEARGVPRDKLEALNAKPFTIPGVGLIESLN 242

Query: 265 VSNAAAVALYITQN 278
           ++ A  +++Y  Q 
Sbjct: 243 LATAVNLSIYERQR 256


>gi|325286833|ref|YP_004262623.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324322287|gb|ADY29752.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 177

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 3/161 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E   L          + +++VLD++   +NIG++ R+A AF  + I      +      +
Sbjct: 8   ELERLNIEEFKQAEKTPIVIVLDNIRSLNNIGSVFRTADAFLIEKIYLCGITAKPPHKDI 67

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALIL 233
            K+A GA + + +  ++     ++++ S  ++T+ +          + K   N K ALI 
Sbjct: 68  QKTALGATDSVAWEYVNETLPLIEQLKSNSYETLAVEQAENATFLNDFKITQNQKYALIF 127

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           G E KG+       +  +  +   G   +LN+S +A V ++
Sbjct: 128 GNEVKGVAQDVVTASDVVLEIPQYGTKHSLNISVSAGVVVW 168


>gi|163784271|ref|ZP_02179188.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880460|gb|EDP74047.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 131

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 1/123 (0%)

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
               G++  +  S   + V+ K ++GA+ H+P  ++S+L D+L+K    G   + +    
Sbjct: 1   MGASGVVVPRERSAPINEVVVKGSAGAVFHLPIAKVSSLRDSLEKFQKLGGWILAIE-KG 59

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            KP+ +      +AL+LG+EGKG      + A  +A + M G I +LNV++A A+ ++  
Sbjct: 60  GKPIHKLKFPFPLALVLGSEGKGTSKSILKLADIIATIPMKGKITSLNVASAGAIGMWEV 119

Query: 277 QNH 279
              
Sbjct: 120 SKQ 122


>gi|262037359|ref|ZP_06010824.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
 gi|261748616|gb|EEY35990.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
          Length = 259

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 5/184 (2%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           TV    + + V  +   QG+    +  L+   D   +  +L     V DP N+G I+R+ 
Sbjct: 71  TVLKDDLFEEVSTQENSQGIIFLFSKDLNSINDIEEDVVVLD---DVQDPGNLGTIMRTM 127

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
            A     +I TK      +    ++  G + ++  I      + L+ +    +  I  + 
Sbjct: 128 EAAGFKNLILTKGSVDVYNPKTVRATMGGIFNLNIIY-ETPENILKFLKEKEYLIITTAL 186

Query: 215 DS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                   +     K A I G EG G+     E +   + + + G I++LNVS A  + L
Sbjct: 187 HEDAVSYGKIELKKKNAYIFGNEGGGVSDYFIENSDIKSIIPIYGNIESLNVSIAVGIFL 246

Query: 274 YITQ 277
           Y  +
Sbjct: 247 YKMR 250


>gi|323435932|ref|ZP_01049071.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|321496247|gb|EAQ40305.2| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 164

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A  N ++++V DHV+ P N+G+I R A AF    II         S+ L K+A      +
Sbjct: 11  ASHNKEIIIVCDHVSGPANVGSIFRLADAFGVQEIIFCGNAPDVTSSRLRKTARNTERTV 70

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQE--IKNDKIALILGAEGKGLRPKT 244
            +    N++  L  +   GF TI L  DS   P+ +       KI+L++GAE  G+ P+ 
Sbjct: 71  RFRESENISTTLINLREQGFSTIALEIDSTSLPIAEVHIANMSKISLVIGAESTGVTPEA 130

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E    +AH+ M GI  ++NV+ AA +ALY    
Sbjct: 131 LEQCAVIAHIPMHGINSSMNVAQAAGIALYELTR 164


>gi|163789140|ref|ZP_02183583.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
           ALC-1]
 gi|159875553|gb|EDP69614.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteriales bacterium
           ALC-1]
          Length = 218

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 3/147 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R     +  + V   HN  A++RS   F    +   +    +  ++  + A GA + +
Sbjct: 27  AQRTKHFTVATEDVYQLHNASAVMRSCDVFGIQELNIVEE--VNSKSIDREIAMGAQKWV 84

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              R  +    +  + + G+Q +  +  ++   L       K     G E +GL  +  +
Sbjct: 85  DLNRFHSTKSCIDHLKTKGYQIVATTPHAEDCDLIDFDITKKSCFFFGRETEGLSQQVID 144

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVAL 273
            A     + M G  ++LN+S +AA+ L
Sbjct: 145 EADCFLKIPMVGFTESLNISVSAAIIL 171


>gi|313205776|ref|YP_004044953.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312445092|gb|ADQ81447.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
          Length = 228

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 128 AVRNSQLLM-VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           A  +S  ++ V++ V    N  AI+RS  A +   ++  ++   +          GA   
Sbjct: 35  AEESSDFILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEK--DNIFDPNLSVTKGADTW 92

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   ++     +L+K+   G++ + +S ++    L        IAL+ G E +G+  +  
Sbjct: 93  VEVEKMPRNKASLEKIKERGYKIVAVSPENNATMLPDYKVEKPIALVFGTEWEGVSDELL 152

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G  K+ NVS AAA+ +Y  +   
Sbjct: 153 DFADETLAIPMYGFTKSFNVSVAAAICMYELKQKL 187


>gi|225010432|ref|ZP_03700903.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
 gi|225005261|gb|EEG43212.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacteria bacterium
           MS024-3C]
          Length = 177

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
             A + + L+++LD++   +NIG++ R+A AF    I      +      + K+A GA E
Sbjct: 17  FKAAQKTPLILILDNIRSLNNIGSVFRTADAFLVTKIYLCGITAQPPHKDINKTALGATE 76

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRP 242
            + +    N  + ++++ +       +          ++        ALI G E KG++ 
Sbjct: 77  TVAWEYRENTLELVKELQAQSIAVWSVEQAQGATFLDKMSLQPETTYALIFGNEVKGVQQ 136

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                +  +  +   G   +LN+S +A V ++
Sbjct: 137 AVVNESDGVVEIPQFGTKHSLNISVSAGVVVW 168


>gi|220925797|ref|YP_002501099.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219950404|gb|ACL60796.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 272

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 7/241 (2%)

Query: 39  KSRHTSQPENLFLYGVHTVSAALNNPSRKIF---QLLATKNALARLDWDANLPHPFPVKT 95
           + R     +  F+     V   L +P  +      LLA +     +   A      PV  
Sbjct: 22  RERDLVGRQGRFVAEGEVVLRVLLSPRARFRPESILLAPERLPGLMPLLAASGTAAPVYV 81

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV--RNSQLLMVLDHVNDPHNIGAILRS 153
            P   +  + G   +H+G+         P  DA+      LL+ L  + +  N+G + R+
Sbjct: 82  APRPVMSALAGF-PIHRGVLAIGRGGPDPDPDALVPEGPALLLGLVGLANHDNVGGLFRN 140

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  D +I              + ++G    +P+ R+ +    L   H  G   + L+
Sbjct: 141 AAAFGADAVILDAATCDPLYRKAIRVSAGTALTMPFGRVPDGEALLALCHRHGLVPVALT 200

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              ++ +       +  L+LG EG GL       +     + M   + +LNV+ A AVAL
Sbjct: 201 PAGEEDIAALPPLPRALLLLGTEGTGLPEALMARS-RRVRIAMAPGVDSLNVAAAGAVAL 259

Query: 274 Y 274
           +
Sbjct: 260 H 260


>gi|307107286|gb|EFN55529.1| hypothetical protein CHLNCDRAFT_133965 [Chlorella variabilis]
          Length = 542

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 99/292 (33%), Gaps = 65/292 (22%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL--LATKNALARLDWDANLPHPFP 92
              + S++  +           V AAL + +  + +L              +A LP    
Sbjct: 252 KLRESSKYRRE-----------VGAALVSGADLVVELAPYCAPYRALVGLEEAQLPDGIA 300

Query: 93  VK---TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ----LLMVLDHVNDPH 145
            +   T     + KI G  +V    AL     L PT D +  +      ++ LD V DP 
Sbjct: 301 AERYVTATAPVMQKIAGLGSV-GAGALAAEAALPPTADLLGGAPGQLRRVLALDGVQDPG 359

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--NLTDALQKMH 203
           N+G +LR+A+A      +         +    +++ GA+  +P  + S       +++  
Sbjct: 360 NLGTLLRTALALGWQAAVLLPGCCDPYNDKALRASRGAVFKLPLAQYSLGQWQQLVEEQR 419

Query: 204 -----------------------------------SWGFQTIGLSSDSKK-PLEQEIKND 227
                                                  Q    + +     L+Q +   
Sbjct: 420 LVPLAADPSRAAAAAAADARGTAGRDGSGSAAARQQQHGQ--AAAPEGDVGALQQRLAQL 477

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYIT 276
            + L LGAEG+GL    +E       +   G    +++LNVS A A+ ++  
Sbjct: 478 PVCLCLGAEGQGLSAGVRERC-VAVSIPQSGGGELMESLNVSAAGAILMFAL 528


>gi|165975661|ref|YP_001651254.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307249419|ref|ZP_07531410.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|165875762|gb|ABY68810.1| conserved putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306858561|gb|EFM90626.1| rRNA methyltransferase [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 345

 Score =  130 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 15/241 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
             ++ E + +YG +   A        I +L AT     +L    +    H      V   
Sbjct: 102 KKNRAEEMKVYGENACIALFKQRPDAIVRLWATVEGAKKLGDILSYLAEHKKAYHVVDRA 161

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            ++++ G E  H  + L         L   L   R    L++LD VN+  N+G I+R+  
Sbjct: 162 EMERVTGTE-HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCA 220

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            +  +G+I         S+  A+ A G LE +  +   +   AL ++ + G+Q + L+ +
Sbjct: 221 FYGVNGVIVESA-DTLNSSAAARVAEGGLEFVRPLETKHKQIALTQLRNAGYQVVHLTRN 279

Query: 216 S-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAVA 272
               PL +     K   +L +E   +  +  E    +   L     + + LNV+ +  + 
Sbjct: 280 KQAAPLAKTKLAAKTVFVL-SE---IPAQDIEYPEDTTVQLSFENPLNSGLNVAVSTGIL 335

Query: 273 L 273
           L
Sbjct: 336 L 336


>gi|251793410|ref|YP_003008138.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534805|gb|ACS98051.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 355

 Score =  130 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/240 (24%), Positives = 98/240 (40%), Gaps = 13/240 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-DWDANLPHPFPVK-TVPPQ 99
             ++ E + +YG +   A        I +L AT     ++ D  + L     V   V  +
Sbjct: 115 KKNRAEEIKVYGENACLALFEKRPGSIVRLWATVQMAHKIGDICSYLAANKKVYHIVDSE 174

Query: 100 TIDKIVGKEAVHQGLALETA---PL-LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K+ G E  H G+ +      P  L   LD   +   L++LD VN+  NIG ILR+  
Sbjct: 175 ELTKVSGTE-HHGGICMLVKKSHPFTLQGYLDVPHSEDCLVLLDGVNNAQNIGGILRTCA 233

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSS 214
            F    IIT    S + S +  + A G  E+I  +  ++   AL  + +  +Q +   + 
Sbjct: 234 FFGVKHIITETPESLN-SPITLRVAEGGAEYIRVLETADTRHALAALRAADYQIVHIATG 292

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA-LNVSNAAAVAL 273
            +   L++    +K   +L +EG                L     +K+ LNV+  A V L
Sbjct: 293 KNGTSLDKVRLKNKTVFVL-SEGS--TEDLVNKEDEQVRLSFANPLKSNLNVAVNAGVLL 349


>gi|241764772|ref|ZP_04762781.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN]
 gi|241365762|gb|EER60434.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax delafieldii 2AN]
          Length = 228

 Score =  130 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 85/226 (37%), Gaps = 12/226 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++   K ++   Q S    +   ++L G H  SAAL    R    + +          
Sbjct: 11  SRDNAFVKDLRRLAQDSTAYRKQGRVWLEGDHLCSAALQRGVRPAIAVFSESFWPQAPAM 70

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
            A       V  +       I G E+    G  ++ AP        +R     +VLD V 
Sbjct: 71  YAQAASKVIV--LADGLFADISGLESPAPMGFVVDAAPS-----QGLRPGVATVVLDRVQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA AF    +   K  +   +  + ++  GA   +  +       AL+++
Sbjct: 124 DAGNVGSILRSASAFGFRQVAALKGGAALWAPKVLRAGMGAHFALDLVEGL----ALEEL 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                  +  SS     L +       A +LG EG+G+ P  +  A
Sbjct: 180 GVLDVPLLVTSSHEGDLLHRASLPWPCAWVLGHEGQGVSPALEAQA 225


>gi|325855522|ref|ZP_08171859.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
 gi|325483805|gb|EGC86764.1| RNA methyltransferase, TrmH family [Prevotella denticola CRIS
           18C-A]
          Length = 242

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 88/256 (34%), Gaps = 23/256 (8%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++  K+    +  +   +       G   VS  L +      ++L     + ++ +  + 
Sbjct: 4   KNRTKLIRSLETKKGREKAGLFVAEGPKVVSDLL-HGGFLAEEVLEDIEDIRKVSFLKHP 62

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
                +  +P +               A ET+   S T       QL++ LD V DP N+
Sbjct: 63  QSVLGIFKMPEE---------------ADETSKDYSRTFHEHIEGQLVLALDGVQDPGNL 107

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G I+R A  F  D I  +   +   +  + ++  G++  +    +              +
Sbjct: 108 GTIIRIADWFGIDDIFCSHETADCWNPKVVQATMGSIARVKLHYLDLNLLIDNLPID--Y 165

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI--IKAL 263
                  D K    Q +    + +++G EG G+ P  +        +     G    ++L
Sbjct: 166 PVYATLLDGKNLYAQPLTAHGM-IVMGNEGNGITPLLRTKINRKLLIPNYHAGREAAESL 224

Query: 264 NVSNAAAVALYITQNH 279
           NV+ A ++     +  
Sbjct: 225 NVAVATSIVCAEFRRR 240


>gi|315022826|gb|EFT35850.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Riemerella
           anatipestifer RA-YM]
 gi|325336783|gb|ADZ13057.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 231

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 128 AVRNSQLLM-VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           A  +S  ++ V++ V    N  AI+RS  A +   ++  ++   +          GA   
Sbjct: 35  AEESSDFILPVMEDVYQYRNAAAIVRSVEACAFHKVVALEK--DNVFDPNLSVTKGADTW 92

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   ++     +L+K+   G++ + +S ++    L        IAL+ G E +G+  +  
Sbjct: 93  VEVEKMPRNKASLEKIKERGYKIVAVSPENNATMLPDYKVETPIALVFGTEWEGVSDELL 152

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + A     + M G  K+ NVS AAA+ +Y  +   
Sbjct: 153 DFADETLAIPMYGFTKSFNVSVAAAICMYELKQKL 187


>gi|301016090|pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
 gi|301016091|pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
 gi|301016092|pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
           S-Adenosyl- L-Methionine Complex
 gi|301016093|pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
           S-Adenosyl- L-Methionine Complex
          Length = 277

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 98/242 (40%), Gaps = 4/242 (1%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
            +  +   +     +   +    + I    ++   L     D       PV+ +    ++
Sbjct: 29  RASIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSIVN 88

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           ++   E   +   +   P  +   D       ++VLD V    NIGAI+R+++A    GI
Sbjct: 89  QLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGI 148

Query: 163 ITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +      +      L +++ G +  +P + +++  +A+  +       + L +D    ++
Sbjct: 149 VLVDSDLATIADRRLLRASRGYVFSLPVV-LADREEAVSFLRDNDIALMVLDTDGDLGVK 207

Query: 222 QE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279
               + D++AL+ G+E  G     QE +     + M    ++LNVS +  +AL+     +
Sbjct: 208 DLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARN 267

Query: 280 FA 281
           FA
Sbjct: 268 FA 269


>gi|146302736|ref|YP_001197327.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146157154|gb|ABQ08008.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 220

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIP 188
           R     + ++ V   HN  A++RS   F    +   ++        + K  A GA + + 
Sbjct: 29  RTKHFTIAVEDVYQMHNTSAVMRSCEVFGIQELNIIEQR---FGKRIDKEIALGAQKWVD 85

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQET 247
             R   +   +  +   G+Q I  +      L Q+   +   AL  G E  GL P+  E 
Sbjct: 86  INRFDTVDGCISSLRDKGYQIIATTPHENDCLIQDFDISKPSALFFGTEKDGLSPEILEK 145

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A     + M G  ++LN+S +AA+ +
Sbjct: 146 ADGFLKIPMVGFTESLNISVSAAIII 171


>gi|194751485|ref|XP_001958057.1| GF10725 [Drosophila ananassae]
 gi|190625339|gb|EDV40863.1| GF10725 [Drosophila ananassae]
          Length = 421

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 99/297 (33%), Gaps = 34/297 (11%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + L G   +  AL    +    L + K+
Sbjct: 119 NLEFVRLTLQDPLTSTLLTTVRSKKRRDKNRQIILEGRRLIQEALQCGLKMQTLLFSQKD 178

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
            LA +  +           +  VP   +            +A+   P        +    
Sbjct: 179 QLALVKEEVGKAQQGTGSKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLESNLAEQE 238

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   + +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 239 RVGTKPLPVTVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 298

Query: 186 HIPY---IRISNLTDALQKMHSWGFQTIGLS-----SDSKKPLEQEIKNDKIA---LILG 234
            IP    +    L++ +    S   +           +S + ++    +D  A   LI+G
Sbjct: 299 RIPILDDVTWEELSNIIPPEVSSDCRVFIAENNLEKRESHETIDYADISDVGAQNFLIIG 358

Query: 235 AEGKGLRPKT---------QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+             +       ++ +   I +LNV++A  + L+  +    +
Sbjct: 359 GESHGVSEAAYRFKHLVGGKGKC---VYIPLAAGIDSLNVASALTLLLFELRRKINQ 412


>gi|260060604|ref|YP_003193684.1| putative SpoU rRNA methylase family protein [Robiginitalea
           biformata HTCC2501]
 gi|88784734|gb|EAR15903.1| putative SpoU rRNA methylase family protein [Robiginitalea
           biformata HTCC2501]
          Length = 178

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 4/157 (2%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L          +  +++LD++   HN+G++ R+A AF  + +      +      + K+A
Sbjct: 12  LDVAAFKEAPKTPAVLILDNIRSLHNVGSVFRTADAFRVEKVWLCGITAQPPHKDIRKTA 71

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPL--EQEIKNDKIALILGAEG 237
            GA E + +    +    L ++     +   L  ++    L   +     + A +LG E 
Sbjct: 72  LGATESVAWEYAGDTLQVLDRL-ETTHECWALEQAEGAVSLGEFRPEPGKRYAFVLGHEV 130

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           KG+     +    +  +   G   +LN+S AA V L+
Sbjct: 131 KGVSQAVIDRCRGVVEIPQLGTKHSLNISVAAGVLLW 167


>gi|297198395|ref|ZP_06915792.1| rRNA methylase [Streptomyces sviceus ATCC 29083]
 gi|297147074|gb|EFH28473.1| rRNA methylase [Streptomyces sviceus ATCC 29083]
          Length = 260

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 6/185 (3%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP 88
           DY  +     + +           G   +  A +        LL+ K      D    LP
Sbjct: 17  DYTGLTDVELRRKREPAEGLFIAEGEKVIRRAKDAGYEMRSMLLSAKWVDVMRDVIDELP 76

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLAL--ETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              PV  V P+  +++ G   VH+G     +  PL +   + ++ ++ +++++ VND  N
Sbjct: 77  --APVYAVSPELAEQVTGYH-VHRGALASMQRKPLPTAA-ELLQTARRVVIMESVNDHTN 132

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           IGAI RSA A   D ++ +   +        K + GA+  +PY R+     +L  +   G
Sbjct: 133 IGAIFRSAAALGMDAVLLSPDCADPLYRRSVKVSMGAVFSVPYARLDTWPKSLDSVREAG 192

Query: 207 FQTIG 211
           F  + 
Sbjct: 193 FTLLA 197


>gi|145636308|ref|ZP_01791977.1| rRNA methylase [Haemophilus influenzae PittHH]
 gi|145270473|gb|EDK10407.1| rRNA methylase [Haemophilus influenzae PittHH]
          Length = 234

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 15/232 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG +   A     +  I +L AT     ++    +    +      V  + + ++ G E
Sbjct: 3   VYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYLAENKKAYHVVDSEELARVSGTE 62

Query: 109 AVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             H G+ L         L   LD  RN   L++LD+VN+  NIG +LR+   F    I+ 
Sbjct: 63  -HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTCAYFGVKNIVA 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-KPLEQE 223
               +   SA   + A G  E+I  +   ++  AL  +   G+Q I +S + +  PL++ 
Sbjct: 122 DNVEN-LYSAASMRVAEGGAEYIRVLETDDIDSALMHLRKSGYQIIHVSHNKQGDPLDKV 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAVAL 273
              +K+  +L +E      ++  T   +   L +   IK+ LN++  A V L
Sbjct: 181 RLKNKVVFVL-SES---STESLATPEDTQVRLTLASPIKSGLNIAVNAGVLL 228


>gi|120553328|ref|YP_957679.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
 gi|120323177|gb|ABM17492.1| tRNA/rRNA methyltransferase (SpoU) [Marinobacter aquaeolei VT8]
          Length = 242

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 25/256 (9%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-----FQLLATKNALARLDW 83
           D KK+     + ++        + G H V   L   ++++      QL  T    A   W
Sbjct: 5   DIKKLH----QKKYRQSFGQFLVEGEHLVLE-LEKAAKQVPHWRNAQLYVTS---AHEHW 56

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
               P P+P   +  + + ++       QG+     PL   T     + +  + L  V D
Sbjct: 57  ----PSPWPKHVISDRQMAQLSDTR-TPQGILAVV-PLPPATRGESASREKALYLHEVQD 110

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ILR+   F     + +       +  + +++ GA+ H+P         AL  + 
Sbjct: 111 PGNLGTILRTLAWFGGFRCLLSPGSVDPFNPKVVRASMGAIFHVPL----ETEVALDTLG 166

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKA 262
               +   L       + +     +   + G E +G+  +   E       +     I++
Sbjct: 167 QRYARIACLDI-GGDSITKPEFQAQDCYLFGNEARGVPKQALTELGAHAYTIPGAAAIES 225

Query: 263 LNVSNAAAVALYITQN 278
           LN+++A  +A+Y    
Sbjct: 226 LNLASAVNMAVYELNR 241


>gi|323457320|gb|EGB13186.1| hypothetical protein AURANDRAFT_6212 [Aureococcus anophagefferens]
          Length = 147

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++LD +    N+G ++R+        ++         +  + K+A  A   +   R 
Sbjct: 1   DLTVILDGLRSGENVGNVIRTCETAGAR-VLCCGTTPAPPTPAVLKAACNAAPFVDVRRE 59

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +  DA++ +   G     L ++    PL        +AL+ G E  G+ P        +
Sbjct: 60  PSTLDAVRALQGRGVAVYALETTRGSVPLYDADLPAPLALVFGNELVGVHPDVLAACDGV 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L   G+  +LNV++ AA A+Y     
Sbjct: 120 VSLPTFGVKNSLNVASCAAAAVYEVVRR 147


>gi|1709266|sp|P52391|NHS_STRAS RecName: Full=23S rRNA methyltransferase; Short=23S rRNA methylase
 gi|1654411|gb|AAB17875.1| 23S rRNA methyltransferase [Streptomyces actuosus]
          Length = 274

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 98/242 (40%), Gaps = 4/242 (1%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTID 102
            +  +   +     +   +    + I    ++   L     D       PV+ +    ++
Sbjct: 26  RASIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDLCRQREIPVRLIDVSIVN 85

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI 162
           ++   E   +   +   P  +   D       ++VLD V    NIGAI+R+++A    GI
Sbjct: 86  QLFKAERKAKVFGIARVPRPARLADIAERGGDVVVLDGVKIVGNIGAIVRTSLALGAAGI 145

Query: 163 ITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           +      +      L +++ G +  +P + +++  +A+  +       + L +D    ++
Sbjct: 146 VLVDSDLATIADRRLLRASRGYVFSLPVV-LADREEAVSFLRDNDIALMVLDTDGDLGVK 204

Query: 222 QE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNH 279
               + D++AL+ G+E  G     QE +     + M    ++LNVS +  +AL+     +
Sbjct: 205 DLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARN 264

Query: 280 FA 281
           FA
Sbjct: 265 FA 266


>gi|94968939|ref|YP_590987.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550989|gb|ABF40913.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Koribacter
           versatilis Ellin345]
          Length = 161

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + ++LD+V   +N+GA  R+A   +   +      +      ++K+A GA E +P+   
Sbjct: 8   PVAVLLDNVRSMYNVGAFFRAADGVNLQKLCLCGITAHPPKKAISKTALGAEETVPWEHG 67

Query: 193 SNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +  +  + + + GFQ   + ++     L        + ++ G E  GL P+    A   
Sbjct: 68  WDAVEMAKHLRAEGFQLAAIETNPEATDLFDWQPRFPVCVVFGHEVGGLLPELLALADVH 127

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M G   +LNV+ A  V LY     +
Sbjct: 128 MRIPMRGEKTSLNVATAGGVVLYELLRKY 156


>gi|195496211|ref|XP_002095597.1| GE22485 [Drosophila yakuba]
 gi|194181698|gb|EDW95309.1| GE22485 [Drosophila yakuba]
          Length = 407

 Score =  129 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 96/297 (32%), Gaps = 34/297 (11%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           +  + +L         + +  +  +   +   + + G   +  AL    +    L + K 
Sbjct: 108 NLEFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKE 167

Query: 77  ALARLDWD---ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
            LA +  +   A L     +  VP   +            +A+   P        +    
Sbjct: 168 QLALVKEEVGFAQLETGTKIYKVPQHDLKTWSSLVTPPGLMAIFDRPSDKGLDKNLAEQQ 227

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   + +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 228 RLGSEPLPITVVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQF 287

Query: 186 HIPY---IRISNLTDALQKMHSWGFQTIGLSS-----DSKKPLEQEIKNDKIA---LILG 234
            +P    +    L   +    +         S     ++ + ++        A   LI+G
Sbjct: 288 RVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQGLGAHNLLIIG 347

Query: 235 AEGKGLRPKT---------QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+             +       ++ +   I +LNV++A  + L+  +    +
Sbjct: 348 GESHGVSEDAYRFLNLVGGKGKC---IYIPLAAGIDSLNVASALTLLLFELRRKLNQ 401


>gi|326931469|ref|XP_003211851.1| PREDICTED: RNA methyltransferase-like protein 1-like, partial
           [Meleagris gallopavo]
          Length = 375

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 96/322 (29%), Gaps = 63/322 (19%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           Y K     R   K+ +  +      +   + L G   +  AL   +       +T   L 
Sbjct: 42  YEKASPGDRSLGKVVTIAKSRSFRDRHGKVLLEGQRLIRDALEAGAVPRALFFSTALHLR 101

Query: 80  RLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVL 138
            L            V+    +    +V  + +   + + + P  +          L+++ 
Sbjct: 102 ELPSAPLKGARLVRVRFEDIKCWSDVVAPQGM---IGIFSKPDHAKMSYPAAQLPLVLIC 158

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           D++ DP N+G ILRSA    C+ ++ TK         + ++  GA   +P +   +    
Sbjct: 159 DNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIVANLDWESV 218

Query: 199 LQKMHSWGFQTIGLS---------------------SDSKKP------------------ 219
              + S G +                          S S  P                  
Sbjct: 219 PSNLPS-GVRVCVADNKDPGAQAETEPTSQRAGRSGSHSGNPKAPVKPKYKAAPPEHEDE 277

Query: 220 ---------------LEQEIKNDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGII 260
                            +       A+++G E  GL P     A         + +   +
Sbjct: 278 ERTEGVSASELAAQYYYENWMRSPAAVVVGGETHGLSPDALHLAASTGGKRLVIPVVPGV 337

Query: 261 KALNVSNAAAVALYITQNHFAK 282
            +LN + AAA+ L+  +    +
Sbjct: 338 DSLNSAVAAAIVLFEGKRQLQR 359


>gi|195440808|ref|XP_002068232.1| GK13008 [Drosophila willistoni]
 gi|194164317|gb|EDW79218.1| GK13008 [Drosophila willistoni]
          Length = 409

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 85/272 (31%), Gaps = 27/272 (9%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVK 94
           +  +   +   + + G   +  AL+   +    + + K  LA L  +  L        + 
Sbjct: 137 RSRKRRDKNRQIIIEGRRLIREALSCGLKMQTLIFSQKEQLALLREEVALAQQKTQTKIY 196

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVLDHVNDPHNIGA 149
            VP   +            + +   P       A          + +V D++ +P+N+G+
Sbjct: 197 KVPQHDLKTWSTLVTPPGVMGIFERPSSRGLETAKTTPTSSSLPITVVCDNIREPNNLGS 256

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY---IRISNLTDALQKMHSWG 206
           I+R+  A  C  ++          +   +   G    +P    I   +L   +    +  
Sbjct: 257 IIRTCAALPCHQVVVIHGSCDPWESKALRGGCGGQFRLPIRDDIAWDDLALTIPPETADN 316

Query: 207 FQTIG-------LSSDSKKPLEQ--EIKNDKIALILGAEGKGLRPKT---QETATS---- 250
                       L+  +           N    LI+G E  G+  +              
Sbjct: 317 CHVYIAENNLEKLAEHTAIEYADMPAAPNGHQILIIGGESHGVSSEAYSFMNLVGQNKGK 376

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             ++ +     +LNV++A  + L+  +    +
Sbjct: 377 CVYIPLAEGTDSLNVASALTLLLFELRRKLKQ 408


>gi|47227791|emb|CAG08954.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 437

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 105/357 (29%), Gaps = 91/357 (25%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
            + D  Y +     +   ++ S  +          + L G   +  AL+  +       +
Sbjct: 79  QIDDLRYERALPGDKRLGRLVSIARSRTFREHQGKILLEGRRLICDALDAGAVPQMVFFS 138

Query: 74  TKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS 132
           T + L  L  D         VK    +    +V  + V   +A+ + P      D   + 
Sbjct: 139 TADRLRELPLDKLRRATLIKVKNEDIKVWSDLVTPQGV---IAIFSRPDPLTFPDRRPSV 195

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-------------------------- 166
            L +V D++ DP N+G +LR A A  C  ++ TK                          
Sbjct: 196 PLSLVCDNIRDPGNLGTMLRCAAAAGCRDVLLTKGISRIKKRASPTVRWVSLKLIPFFFK 255

Query: 167 --RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM---------------------- 202
                      + ++A GA   +P +      D   ++                      
Sbjct: 256 PTGCVDVWEPKVLRAAMGAHFRLPILPSLAWNDIESRLTEALTVHIADSSCGSHASQEMA 315

Query: 203 ---------HSWGFQTIGLSSDSKKPLEQEIKND------------------------KI 229
                     +  F  +     +K    +E  +D                          
Sbjct: 316 DGSASHKPSRAGDFGWVSTRGKTKNMRYEEYDSDSDGEDEEHHPRVDSKLYHENWAQTPA 375

Query: 230 ALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           AL++G E  G+ P+    A         + +   + +LN + AA++ L+  +    +
Sbjct: 376 ALVIGGETHGVSPEAVRLAGKTGGHRLFIPIVPNVDSLNSAMAASILLFEGRRQLLQ 432


>gi|323343216|ref|ZP_08083447.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463280|gb|EFY08475.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 247

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 7/243 (2%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKI-FQLLATKNALARLDWDANLPHPFPVKTVPPQT 100
            T Q E + + G  +V A L    R I F  +  K+      +   +     +K +  + 
Sbjct: 4   RTHQGEIMIVSGKISVKAILKERKRDIEFVAILDKHNDKESRYVERIAEGLKIKRMSREE 63

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSC 159
           +D +      H G  +     +S  L+ +    L LM ++ V DP N+G I R+  +   
Sbjct: 64  MDALA-TNKTHGGYLVSCGKRISDPLNYLPKQTLSLMCIEGVTDPFNLGEICRTVASLGF 122

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKK 218
           DGIIT         A L ++++GA E + +++  +L+  L+ + +           D  +
Sbjct: 123 DGIITPSYDFYEHEAKLIRASAGASESLWWMQSDDLSSDLKAIKAKKVVMAAAHRGDESE 182

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN-AAAVALYITQ 277
            L      D++ + LG   +GL     + +     +     + +L+ S  A +V  Y   
Sbjct: 183 SLLTYKLPDRVCICLGGALRGLSKSVLDISDVNVRIDYDARV-SLS-SVGACSVFAYERY 240

Query: 278 NHF 280
              
Sbjct: 241 RQL 243


>gi|255534645|ref|YP_003095016.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340841|gb|ACU06954.1| tRNA (Guanosine18-2'-O-) -methyltransferase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 255

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 128 AVRNSQLLM-VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           A  +S  ++ V++ +    N  AI+RS  A     I+  +  S +E     +   GA   
Sbjct: 61  APESSGFVLPVMEDIFQFRNAAAIVRSVEACGFHKIVAME--SENEFNPNLRVTKGAETW 118

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +   ++ +  ++L ++ + G++ + +S + +   L      + +AL+ G E +G+  +  
Sbjct: 119 VEVEKMPHNLESLTEIKNRGYKILAVSPEKNATMLPDYQLKEPVALVFGTEKEGVTEEIL 178

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A     + M G  ++ NVS AAA+  Y  +    +
Sbjct: 179 DFADETVAIPMYGFTRSFNVSVAAAICFYELKQKLIR 215


>gi|307565244|ref|ZP_07627738.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
 gi|307346057|gb|EFN91400.1| RNA methyltransferase, TrmH family [Prevotella amnii CRIS 21A-A]
          Length = 252

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L+  L      +L + LD + DP N+G I+R A  F  + I  +       S  + ++  
Sbjct: 92  LNDVLGLFSTQKLSLALDGIQDPGNMGTIIRIADWFGIENIYCSIDTVDCWSPKVVQATM 151

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           G++  +    I NL   + K+                   Q++  + I +++G EGKG+ 
Sbjct: 152 GSIARVNIYYI-NLPAFIDKVP-NDCPIYTTLLTGCNIYNQKLSQNGI-IVMGNEGKGIS 208

Query: 242 PKTQETATSMAHLHMP----GIIKALNVSNAAAVALYITQNHFA 281
            + ++      ++          ++LNV+ A A+     + +  
Sbjct: 209 EELRQKVNKSLYIPNYSLKESSAESLNVAVATAIICAEFRRNRN 252


>gi|296128722|ref|YP_003635972.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena
           DSM 20109]
 gi|296020537|gb|ADG73773.1| rRNA (adenosine-2'-O-)-methyltransferase [Cellulomonas flavigena
           DSM 20109]
          Length = 264

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 96/253 (37%), Gaps = 8/253 (3%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R+    +++    ++ R  ++   L +     ++ AL     ++  + A + A      
Sbjct: 7   SRSDPQVQRIDDLVRRPRAATK--TLLVEDPEPLTHAL-GAGLEVLGVYALEGADVGPGL 63

Query: 84  -DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             A       ++ V P   +++   E     + +   P  +   D       ++VLD V 
Sbjct: 64  GAAARTRGVAIQEVAPAVWNELFRGERKPDVVGVARTPRPTSLADLAGRPGDVVVLDGVR 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
              N+GA +R+A A    G++      +      + +++ G +  +P +  +   +A   
Sbjct: 124 IVGNVGAAVRTAYALGAAGVVLVDSDLAHPLDRRVVRASRGYVFSLPVVLATR-EEATAA 182

Query: 202 MHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +       +   +  +    +     +++AL+ G+E +G   +    A     + M    
Sbjct: 183 LRELDVPLVAFEAAGELGTGDLAALGERLALVFGSEKRGASAELTAGA-RTVSIPMRTAA 241

Query: 261 KALNVSNAAAVAL 273
            +LNVS A  +AL
Sbjct: 242 DSLNVSVAVGIAL 254


>gi|226887998|pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase
           S-Adenosyl-L-Methionine Complex
 gi|226887999|pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase
           S-Adenosyl-L-Methionine Complex
          Length = 272

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 87/190 (45%), Gaps = 3/190 (1%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV+ +    ++++   E   +   +   P  +   D       ++VLD V    NIG
Sbjct: 75  QNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIVGNIG 134

Query: 149 AILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           AI+R+++A    GII      +      L +++ G +  +P + +S   +A+  +   G 
Sbjct: 135 AIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVV-LSGREEAIAFIRDSGM 193

Query: 208 QTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           Q + L +D    +++     D++AL+ G+E  G     +E +++   + M    ++LNVS
Sbjct: 194 QLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVS 253

Query: 267 NAAAVALYIT 276
            +  +AL+  
Sbjct: 254 VSLGIALHER 263


>gi|136456|sp|P18644|TSNR_STRCN RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
           Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
           rRNA methylase; AltName: Full=Thiostrepton-resistance
           methylase
 gi|46771|emb|CAA26234.1| unnamed protein product [Streptomyces cyaneus]
 gi|1403525|emb|CAA67009.1| Thiostrepton resistance protein [Cloning vector pIJ2581]
 gi|7380884|dbj|BAA93040.1| rRNA methylase [Shuttle vector pRES19]
 gi|17974141|emb|CAC93942.1| thiostrepton resistance gene [Cloning vector pIJ6021]
 gi|18252132|gb|AAL61980.1| thiostrepton resistance protein TsrR [Expression vector pANT849]
 gi|18252137|gb|AAL61984.1| thiostrepton resistance protein TsrR [Expression vector pANT1200]
 gi|42733306|dbj|BAD11208.1| thiostrepton resistance protein [Expression vector pTip-NH1]
 gi|42733313|dbj|BAD11214.1| thiostrepton resistance protein [Expression vector pTip-CH1]
 gi|42733320|dbj|BAD11220.1| thiostrepton resistance protein [Expression vector pTip-NH2]
 gi|42733327|dbj|BAD11226.1| thiostrepton resistance protein [Expression vector pTip-CH2]
 gi|42733334|dbj|BAD11232.1| thiostrepton resistance protein [Expression vector pTip-LNH1]
 gi|42733341|dbj|BAD11238.1| thiostrepton resistance protein [Expression vector pTip-LCH1]
 gi|42733348|dbj|BAD11244.1| thiostrepton resistance protein [Expression vector pTip-LNH2]
 gi|42733355|dbj|BAD11250.1| thiostrepton resistance protein [Expression vector pTip-LCH2]
 gi|42733362|dbj|BAD11256.1| thiostrepton resistance protein [Expression vector pTip-NH1.2]
 gi|42733369|dbj|BAD11262.1| thiostrepton resistance protein [Expression vector pTip-CH1.2]
 gi|42733376|dbj|BAD11268.1| thiostrepton resistance protein [Expression vector pTip-NH2.2]
 gi|42733383|dbj|BAD11274.1| thiostrepton resistance protein [Expression vector pTip-CH2.2]
 gi|42733390|dbj|BAD11280.1| thiostrepton resistance protein [Expression vector pTip-LNH1.2]
 gi|42733397|dbj|BAD11286.1| thiostrepton resistance protein [Expression vector pTip-LCH1.2]
 gi|42733404|dbj|BAD11292.1| thiostrepton resistance protein [Expression vector pTip-LNH2.2]
 gi|42733411|dbj|BAD11298.1| thiostrepton resistance protein [Expression vector pTip-LCH2.2]
 gi|51556866|gb|AAU06204.1| thiostrepton resistance protein [Shuttle cosmid vector pHZ1358]
 gi|51890421|dbj|BAD42594.1| thiostrepton resistance protein [Expression vector pTip-QC1]
 gi|51890428|dbj|BAD42600.1| thiostrepton resistance protein [Expression vector pTip-QC2]
 gi|51890435|dbj|BAD42606.1| thiostrepton resistance protein [Expression vector pTip-QT1]
 gi|51890442|dbj|BAD42612.1| thiostrepton resistance protein [Expression vector pTip-QT2]
 gi|51890449|dbj|BAD42618.1| thiostrepton resistance protein [Expression vector pTip-RC1]
 gi|51890455|dbj|BAD42623.1| thiostrepton resistance protein [Expression vector pTip-RC2]
 gi|51890461|dbj|BAD42628.1| thiostrepton resistance protein [Expression vector pTip-RT1]
 gi|51890467|dbj|BAD42633.1| thiostrepton resistance protein [Expression vector pTip-RT2]
 gi|52354838|gb|AAU44620.1| thiostrepton resistance protein [Cloning vector pJK95]
 gi|63146878|emb|CAI94540.1| thiostrepton resistance [Cloning vector pIJ6902]
 gi|91795125|gb|ABE60866.1| thiostrepton resistance [Conjugative vector pHW001]
 gi|293628574|dbj|BAJ04913.1| thiostrepton resistance protein [Cloning vector pTip-istAB-sacB]
          Length = 269

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 87/190 (45%), Gaps = 3/190 (1%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
              PV+ +    ++++   E   +   +   P  +   D       ++VLD V    NIG
Sbjct: 72  QNIPVRLIDSSIVNQLFKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIVGNIG 131

Query: 149 AILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           AI+R+++A    GII      +      L +++ G +  +P + +S   +A+  +   G 
Sbjct: 132 AIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVV-LSGREEAIAFIRDSGM 190

Query: 208 QTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           Q + L +D    +++     D++AL+ G+E  G     +E +++   + M    ++LNVS
Sbjct: 191 QLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVS 250

Query: 267 NAAAVALYIT 276
            +  +AL+  
Sbjct: 251 VSLGIALHER 260


>gi|193617942|ref|XP_001949552.1| PREDICTED: RNA methyltransferase-like protein 1-like [Acyrthosiphon
           pisum]
          Length = 386

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 99/281 (35%), Gaps = 44/281 (15%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHPFPVK 94
           +  +   Q  ++ L G   +  ALN   +      + K  L  L   +   +LP    + 
Sbjct: 95  KNKKRRQQNSSILLEGKRLIQDALNAGVKPKQIFFSQKRVLESLCLPEELRDLPASSTIF 154

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRS 153
              P  + ++  +    QG+ +    + +    A +N+  + ++ D++ +P N+GA+LR+
Sbjct: 155 YKAPYKMIQLFSETETSQGI-MGIFEIPTIDHRARKNAFPITVICDNIREPGNLGAVLRT 213

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             A     +I  K  +      + ++  GA   +  I   + +  L+ +       + L+
Sbjct: 214 VTAVGASQVILMKGCTNLWGDKVLRAGCGAHFRMKIISDVSWS-FLENIKGQ----VCLA 268

Query: 214 SDSK----------------------------KPLEQEIKND--KIALILGAEGKGLRPK 243
            ++                              P  +        + LI+G E  GL  +
Sbjct: 269 DNNYVGNIDYSNINENTNVNVFRKTAPIELPIAPYYEIDYCKITPLILIIGGETHGLSDE 328

Query: 244 ----TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +       ++ +   I++LN + A  +  +  +   
Sbjct: 329 GYEFARSRKGIRLNIPLENGIESLNSATAVGILCFEAKKQM 369


>gi|290953872|ref|ZP_06558493.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312775|ref|ZP_06803512.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
           URFT1]
          Length = 200

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 11/192 (5%)

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRS 153
             +  +  + +  +    QG+ +    L    L    +   ++VLD + DP NIG ILR+
Sbjct: 17  YIITEKDFEAL-SQTQNPQGVLILAEKLKLEQLSF--DDDFILVLDRIQDPGNIGTILRT 73

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--LQKMHSWGFQTIG 211
           A+A     +I         +     +  GA   + +  I+NL +   + K+         
Sbjct: 74  AIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSLKFGYITNLAELKNIAKLQQRKIWL-- 131

Query: 212 LSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +         +E K     L+ G E  G+      +      +     I++LNV+ AA 
Sbjct: 132 TTPHQGVSCYAKEFKLANSILVFGEEANGIEDF---SVGQKTMIPTLSDIESLNVAQAAT 188

Query: 271 VALYITQNHFAK 282
           + L+       +
Sbjct: 189 IYLFEGLRQRLR 200


>gi|289741955|gb|ADD19725.1| SPOU rRNA methylase family protein [Glossina morsitans morsitans]
          Length = 388

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 93/276 (33%), Gaps = 27/276 (9%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPH 89
           M +  +  +   +   + + G   +  AL    R    L + ++ LA +  +        
Sbjct: 108 MMTTVRSKKRRDKNRQIVIEGRRLILEALECGLRLKTILFSQRDQLAAIKEEVTVLQKAK 167

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAVRNS-QLLMVLDHVNDP 144
              +  VP   + KI        G+        +  +  TL  V     + +V D++ DP
Sbjct: 168 QTEIYKVPHHDL-KIWSTLTTPPGVLAIFERPCSQHVRKTLSKVPPPLPITVVCDNIRDP 226

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQ 200
           +N+G+I+R+  A  C  ++ T        +   +   G    I      +  +       
Sbjct: 227 NNLGSIIRTCAALPCLQVVITIGCCDPWESKSLRGGCGGHFRIQIHDDVHWEEVPLVIPA 286

Query: 201 KMHSWGFQTIG-------LSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETAT--- 249
           ++    +  I            +        +      +I+G E  G+  +  +      
Sbjct: 287 ELADNCWVFIAENNISKSAGLTNVLDYTNIEQTGSHSVVIIGGESHGVSTEAYQFMQTVG 346

Query: 250 ---SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 H+ +   I +LNV++A  + LY  + H  +
Sbjct: 347 NRGRCLHIPVAEGIDSLNVASALTLILYELRKHVLQ 382


>gi|288802421|ref|ZP_06407860.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18]
 gi|288334949|gb|EFC73385.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica D18]
          Length = 240

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 66/153 (43%), Gaps = 7/153 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++QL++ LD V DP N+G I+R A  F  + I  +   +   +  + ++  G++  +   
Sbjct: 91  DNQLVLDLDGVQDPGNLGTIIRIADWFGIENIFCSHETADCWNPKVVQATMGSIARVKLH 150

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + NL + +  +    +       D      QE+ +  + +++G EGKG+  + +     
Sbjct: 151 YL-NLNELIDHLPI-DYPIYATLLDGNNIYSQELSHHGM-IVMGNEGKGISSQLRTKINR 207

Query: 251 MAHLHMPG----IIKALNVSNAAAVALYITQNH 279
              +          ++LNV+ A ++     +  
Sbjct: 208 KLLIPNYPPERETAESLNVAIATSIVCAEFRRR 240


>gi|195128039|ref|XP_002008474.1| GI11797 [Drosophila mojavensis]
 gi|193920083|gb|EDW18950.1| GI11797 [Drosophila mojavensis]
          Length = 412

 Score =  128 bits (322), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 90/272 (33%), Gaps = 25/272 (9%)

Query: 33  MQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD---WDANLPH 89
           +     + RH  + + + + G   +  AL +  + +    + K+ LA L      A    
Sbjct: 136 LTEVRSRKRH-DKNKQIIVEGRRLIQEALQSGLKMLSLFFSQKDQLALLRDQVAQAQQEQ 194

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNI 147
              +  VP   +            LA+   P             L   +V D++ +P+N+
Sbjct: 195 NTKIYKVPQHDLKTWSSLVTPPGLLAIFERPPPQGLQQRQDTDPLPITVVCDNIREPNNL 254

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD----ALQKMH 203
           G+I+R+  A  C  ++ T        +   +   G    +P                ++ 
Sbjct: 255 GSIIRTCAAVPCSQVVVTHGCCDPWESKALRGGCGGQFRLPIHDDVTWEQLPLHIPAEVA 314

Query: 204 SWGFQTIG------LSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPKT---QETA-TS 250
                 I        +  + + ++    +   A   LI+G E  G+        +     
Sbjct: 315 DTCHVFIAENNPSKTAKRAGRTVDYAELDQTGAHNVLIIGGESHGVSDDAYSFMKLVGDR 374

Query: 251 --MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ +   I +LNV++A  + L+  +   
Sbjct: 375 GKCVYIPLAAGIDSLNVASALTLILFELRKKL 406


>gi|147905554|ref|NP_001085673.1| RNA methyltransferase-like protein 1 [Xenopus laevis]
 gi|82184432|sp|Q6GPJ4|RMTL1_XENLA RecName: Full=RNA methyltransferase-like protein 1
 gi|49116890|gb|AAH73125.1| MGC84529 protein [Xenopus laevis]
          Length = 419

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 108/331 (32%), Gaps = 75/331 (22%)

Query: 18  SHYAKLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
           +H  +  R     K++       +  +   +   + L G   ++ AL++ +  +  L  +
Sbjct: 84  AHEFRYERALPGDKRLSKVVTIAKSKKFRDRHGQVLLEGQRLLTDALDSGA-VLQTLFFS 142

Query: 75  KNALARLDWDANLPHPFPVKT----VPPQTIDKIVGKEAVHQGLA-LETAP----LLSPT 125
                R+D+    P     KT    V  + I KI       QGL  +   P    +  P 
Sbjct: 143 -----RVDYLKEFPPDKLRKTNLIKVNFENI-KIWSDLVTPQGLMGIFAKPDHVKMTYPD 196

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   L ++ D++ DP N+G ILR A    C  ++ TK    +    + ++  GA  
Sbjct: 197 TQTKHTLPLSLICDNIRDPGNLGTILRCAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHF 256

Query: 186 HIPYIRISNL---------------------------TDALQKMHSWGF------QTIGL 212
            +P I   +                             +  +K   +G+      +    
Sbjct: 257 RLPIITSLDWDIVPNYLPAGTKVFLADNFRPDNQNKPAEVSEKASDYGWVATDPKRIFIT 316

Query: 213 SSDSKKPLEQEIKN-------------------DKIALILGAEGKGL---RPKTQETAT- 249
               +   ++E                         A+++G E  GL        E +  
Sbjct: 317 EDGYESSSDEEDNTDKLYIPGLEVQSYFERWAQGPCAVVIGGETHGLSIESLLLAEKSNG 376

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ +   I +LN + AA++ L+  +   
Sbjct: 377 KRLNIPVVPGIDSLNSAMAASILLFEGKRQI 407


>gi|157818915|ref|NP_001101752.1| hypothetical protein LOC360569 [Rattus norvegicus]
 gi|149053441|gb|EDM05258.1| similar to putative RNA methyltransferase (predicted) [Rattus
           norvegicus]
          Length = 418

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 101/304 (33%), Gaps = 73/304 (24%)

Query: 39  KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP------- 90
           KSR    +   + L G   ++ AL   +             +RL++   LP         
Sbjct: 112 KSRPFREKQGKILLEGRRLIADALKAGAVPKMFFF------SRLEYIKELPVDKLKGVSL 165

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNSQLLMVLDHVNDPHNIG 148
             VK    +    +V  + +  G+  +  P+    P      +  LL++ D++ DP N+G
Sbjct: 166 IKVKFEDIKDWSDLVTPQGI-MGIFAKPDPVKMTYPETQLHHSLPLLLICDNLRDPGNLG 224

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT------------ 196
            ILRSA    C  ++ TK    +    + ++  GA   +P +                  
Sbjct: 225 TILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPPDTRV 284

Query: 197 ---------------------------DALQKMHSWGFQTIGLSSDSKKPL--------E 221
                                        L+   +     + L + ++K           
Sbjct: 285 YVADNCGLYAQVQMSNKTGDRDWACDRRFLKFHKNE----VDLDTKARKDWLPKLEVQSY 340

Query: 222 QEIKND-KIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYIT 276
                +   AL++G E  G+  ++ + A S       + +   + +LN + AA++ L+  
Sbjct: 341 DLDWTEAPAALVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEG 400

Query: 277 QNHF 280
           +   
Sbjct: 401 KRQL 404


>gi|23007926|ref|ZP_00049585.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 135

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/111 (45%), Positives = 69/111 (62%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           PHN+GAI+R+A AF    I+TT R+SP+ + VLAKSASG LEH+P + + NL +AL  + 
Sbjct: 16  PHNVGAIVRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLG 75

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             GF  IGL S++   L+         L LGAEGKGLR +T E    +  +
Sbjct: 76  ERGFTRIGLDSEAGTSLDAIGPRRPAVLALGAEGKGLRQRTTECCDVLVRI 126


>gi|54887339|gb|AAH38288.1| Rnmtl1 protein [Mus musculus]
          Length = 413

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 105/316 (33%), Gaps = 61/316 (19%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRK----IFQLLAT 74
           +  +     K++ S     KSR    +   + L G   ++ AL   +        +L   
Sbjct: 88  RYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYV 147

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-- 132
           K        D +L     VK    +    +V  + +  G+  +  P+     + + +   
Sbjct: 148 KELPVDKLKDVSL---IKVKFEDIKDWSDLVTPQGI-MGIFAKPDPVKMTYPETLLHHTL 203

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L+++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P +  
Sbjct: 204 PLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNN 263

Query: 193 SNLTDALQKM--------------------------HSW-------GFQTIGLSSDSKK- 218
                    +                            W        F       D+K  
Sbjct: 264 VEWETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTR 323

Query: 219 ----------PLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALN 264
                       + +      A+++G E  G+  ++ + A S       + +   + +LN
Sbjct: 324 KDWLPKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLN 383

Query: 265 VSNAAAVALYITQNHF 280
            + AA++ L+  +   
Sbjct: 384 SAMAASILLFEGKRQL 399


>gi|62859047|ref|NP_001016220.1| RNA methyltransferase-like protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 415

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 107/323 (33%), Gaps = 67/323 (20%)

Query: 22  KLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  R     K++       +  +   +   + L G   ++ AL + +  +  L  ++   
Sbjct: 88  RYERALPGDKRLSKVVTIAKSKKFRDRHGQVLLEGRRLLTDALESGA-VLQTLFFSRVDY 146

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNSQ 133
            +L     L     +K V    I KI       QGL  +   P    +  PT        
Sbjct: 147 LKLFPPDKLRKANLIK-VNFDNI-KIWSDVVAPQGLMGIFAKPDHEKISYPTTQTKHTLP 204

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++ D++ DP N+G ILR A    C+ ++ TK    +    + ++  GA   +P I   
Sbjct: 205 LSLICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGAHFRLPVISSL 264

Query: 194 NLT---------------------------DALQKMHSWGF------QTIGLSSDSKKPL 220
           +                             D  +K   +G+      + +      +   
Sbjct: 265 DWDIVPNYLSAGTKVFLADNFRPDMKHKTGDVSEKASDYGWVSTNPRRILITEEGYESSG 324

Query: 221 EQEIKND-------------------KIALILGAEGKGL---RPKTQETAT-SMAHLHMP 257
           ++E   D                     A+++G E  GL        E +     ++ + 
Sbjct: 325 DEEDNTDKLYIPGLEVQSYFESWAQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVV 384

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
             I +LN + AA++ L+  +   
Sbjct: 385 PDIDSLNSAMAASILLFEGKRQI 407


>gi|291533985|emb|CBL07098.1| rRNA methylases [Megamonas hypermegale ART12/1]
          Length = 126

 Score =  127 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD- 215
                II     +   S  + +SA G+L ++P I   +  D L    +        + D 
Sbjct: 1   MGVKAIICLNGTADIYSPKVVRSAMGSLFNLPIITKISEQDLLSFCQNHNLTLYATALDN 60

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           S K           A+ILG E  G+     +   +  ++ M G  ++LNV+NA ++ +Y 
Sbjct: 61  SAKASWNISYPQDCAIILGNEANGVSDNLLDKCNAKIYIPMKGDAESLNVANAGSMIMYE 120

Query: 276 TQNH 279
               
Sbjct: 121 YCRQ 124


>gi|195354200|ref|XP_002043587.1| GM17520 [Drosophila sechellia]
 gi|194127755|gb|EDW49798.1| GM17520 [Drosophila sechellia]
          Length = 407

 Score =  127 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 89/266 (33%), Gaps = 34/266 (12%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD---ANLPHPFPVKTVPPQTIDKI 104
            + + G   +  AL    +    L + K+ LA +  D   A L     +  VP   +   
Sbjct: 139 QIIVEGRRLIQEALQCGLKMEVLLFSQKDQLALVKEDVGVAQLETGTKIYKVPQHDLKTW 198

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNS--------QLLMVLDHVNDPHNIGAILRSAVA 156
                    +A+   P        +            + +V D++ +P+N+G+I+R+  A
Sbjct: 199 SSLVTPPGLMAIFDRPSDKGLEKNLAEQQRLGSQPLPITVVCDNIREPNNLGSIIRTCAA 258

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPY---IRISNLTDALQKMHSWGFQTIGLS 213
             C  ++ T        +   +   G    +P    +    L   +    +         
Sbjct: 259 LPCSQVVVTHGCCDPWESKALRGGCGGQFRVPIRDDVTWEELALTIPPEAADDCHVFIAE 318

Query: 214 S-----DSKKPLEQEIKNDKIA---LILGAEGKGLRPKT---------QETATSMAHLHM 256
           S     ++ + ++        A   LI+G E  G+  +          +       ++ +
Sbjct: 319 SNQRKRENNQTIDYADIQGLGAHNLLIIGGESHGVSEEAYRFLNLVGGKGKC---IYIPL 375

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
              I +LNV++A  + L+  +    +
Sbjct: 376 AAGIDSLNVASALTLLLFELRRKLNQ 401


>gi|301166246|emb|CBW25821.1| putative SpoU rRNA methylase family protein [Bacteriovorax marinus
           SJ]
          Length = 268

 Score =  127 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 1/148 (0%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + + +VLD++    N+G++ R+A A     +         E++  AKSA G  + I +  
Sbjct: 115 NPIHLVLDNLRSSFNVGSLFRTAEAIGIKEVHLCGYTPTPENSKTAKSALGTDKWIKWSY 174

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +  D +  +   G       ++ + K LE+  +  + A++LG E  GL       +  
Sbjct: 175 WESSLDCIDALKERGASIYAFETEKNAKALEEVREIRECAIVLGNERYGLNESVLNRSDE 234

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  + + G   +LNV    A+A+Y    
Sbjct: 235 ILKIRLDGKKNSLNVGTCGAIAMYHMAR 262


>gi|261493233|ref|ZP_05989760.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261311083|gb|EEY12259.1| RNA methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 237

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQTIDKIVGKE 108
           +YG +   +        I +L AT     +L    +    H      +  + ++++ G E
Sbjct: 3   VYGENACISLFQQRPGSIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDREEMERVTGTE 62

Query: 109 AVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT 164
             H  + L        +L   L   +    L++LD VN+  N+G I+R+   +   GIIT
Sbjct: 63  -HHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTCAFYGVKGIIT 121

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQE 223
               S + S+  A+ A G LE +  +   N   AL ++   G+Q + L+   + P L + 
Sbjct: 122 ENVDSLN-SSSAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLTRHKQAPSLTKI 180

Query: 224 IKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAVAL 273
              +K+  +L +E   +       A  +   L     + + LNV+  A + L
Sbjct: 181 KLAEKVVFVL-SE---IPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGILL 228


>gi|302346532|ref|YP_003814830.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
 gi|302151157|gb|ADK97418.1| RNA methyltransferase, TrmH family [Prevotella melaninogenica ATCC
           25845]
          Length = 240

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 65/153 (42%), Gaps = 7/153 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++QL++ LD V DP N+G I+R A  F  + I ++   +   +  + ++  G++  +   
Sbjct: 91  DNQLVLALDGVQDPGNLGTIIRIADWFGIENIFSSYETADCWNPKVVQATMGSIARVKLH 150

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + NL + +  +    +       D      QE+    + +++G EG G+  + +     
Sbjct: 151 YL-NLNELIDYLPV-DYPIYATLLDGNNIYSQELSRHGM-IVMGNEGNGISSQLRTKINR 207

Query: 251 MAHLHMPG----IIKALNVSNAAAVALYITQNH 279
              +          ++LNV+ A ++     +  
Sbjct: 208 KLLIPNYPPERETAESLNVAIATSIVCAEFRRR 240


>gi|158291898|ref|XP_313427.4| AGAP003655-PA [Anopheles gambiae str. PEST]
 gi|157017508|gb|EAA08963.4| AGAP003655-PA [Anopheles gambiae str. PEST]
          Length = 378

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/305 (17%), Positives = 109/305 (35%), Gaps = 38/305 (12%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
            +  E+        Y  L+ N   Y+ +       ++  +   L L G   +        
Sbjct: 71  NESEERYDKELKLRYTILQSNDARYRDLMMLIGSRKNRERERMLVLEGRRLIMDGYQAGL 130

Query: 66  RKIFQLLATKNA--LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS 123
           R   + + T +   LA L + A L    P+  V  QT+ +          + +   P   
Sbjct: 131 R--LEAIVTSDVKLLAELTFRAKL-KACPIFLVKRQTMMEWSSLTTSPGLIGIFGEPSNM 187

Query: 124 PTL-----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             L        +   + +V D++ +P+N+G+I+RS  A S   +I  K  +        +
Sbjct: 188 SELVTRNATGSKRLPVTVVCDNIREPNNLGSIVRSCAAVSVREVILLKGCAHPWDLKCLR 247

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKN- 226
             +GA   +P           + + +     +    D+KKP            ++     
Sbjct: 248 GGAGAHFRVPIYGPIEAYQLPEHVRAGSIFVVA---DNKKPTDERNGFRWKHYDRIDYGS 304

Query: 227 -DKIALILGAEGKGLRPKTQETATS------------MAHLHMPGIIKALNVSNAAAVAL 273
            D + L++G E  G+    +   T             +AH+ +   +++LN ++A +V L
Sbjct: 305 ADHVVLVIGGETYGVSDDIRRCLTQNDGEQAPQDRKFVAHIPLANGVESLNTASALSVIL 364

Query: 274 YITQN 278
           Y  + 
Sbjct: 365 YEMRR 369


>gi|269925611|ref|YP_003322234.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789271|gb|ACZ41412.1| tRNA/rRNA methyltransferase (SpoU) [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 180

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 1/146 (0%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+ +L  + DP N+GA  R A       II T +      + +A    GA   IP+
Sbjct: 25  PEVDLVFLLQDLEDPVNVGAAFRIADGCEASEIILTGKTPTPPDSTIAGVGRGAHRRIPW 84

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
             + +  +AL ++   G+    +  ++   P       D++ L++G E  G+  +T    
Sbjct: 85  RYVEHADEALVELKGMGYMACAIEVAEGAVPYYSLKYPDRVCLVVGHEYHGVTTRTLSVC 144

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            +  ++ M G IK+LNV  A AV  +
Sbjct: 145 DNAVYIPMYGKIKSLNVHVALAVVAF 170


>gi|160358655|sp|A4QNL8|RMTL1_XENTR RecName: Full=RNA methyltransferase-like protein 1
 gi|140832729|gb|AAI35862.1| RNA methyltransferase like 1 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 107/323 (33%), Gaps = 67/323 (20%)

Query: 22  KLRRNHRDYKKMQSF---NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  R     K++       +  +   +   + L G   ++ AL + +  +  L  ++   
Sbjct: 88  RYERALPGDKRLSKVVTIAKSKKFRDRHGQVLLEGRRLLTDALESGA-VLQTLFFSRVDY 146

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNSQ 133
            +L     L     +K V    I KI       QGL  +   P    +  PT        
Sbjct: 147 LKLFPPDKLRKANLIK-VNFDNI-KIWSDVVAPQGLMGIFAKPDHEKISYPTTQTKHTLP 204

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++ D++ DP N+G ILR A    C+ ++ TK    +    + ++  GA   +P I   
Sbjct: 205 LSLICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGAHFRLPVISSL 264

Query: 194 NLT---------------------------DALQKMHSWGF------QTIGLSSDSKKPL 220
           +                             D  +K   +G+      + +      +   
Sbjct: 265 DWDIVPNYLSAGTKVFLADNFRPDMKHKTGDVSEKASDYGWVSTNPRRILITEEGYESSS 324

Query: 221 EQEIKND-------------------KIALILGAEGKGL---RPKTQETAT-SMAHLHMP 257
           ++E   D                     A+++G E  GL        E +     ++ + 
Sbjct: 325 DEEDNADKLYIPGLEVQSYFESWAQSPCAIVIGGETHGLSIESLLLAEKSNGKRLYIPVV 384

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
             I +LN + AA++ L+  +   
Sbjct: 385 PDIDSLNSAMAASILLFEGKRQI 407


>gi|133777689|gb|AAI15624.1| RNA methyltransferase like 1 [Mus musculus]
 gi|133777901|gb|AAI15623.1| RNA methyltransferase like 1 [Mus musculus]
          Length = 311

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 99/297 (33%), Gaps = 59/297 (19%)

Query: 39  KSR-HTSQPENLFLYGVHTVSAALNNPSRK----IFQLLATKNALARLDWDANLPHPFPV 93
           KSR    +   + L G   ++ AL   +        +L   K        D +L     V
Sbjct: 5   KSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSL---IKV 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS--QLLMVLDHVNDPHNIGAIL 151
           K    +    +V  + +  G+  +  P+     + + +    L+++ D++ DP N+G IL
Sbjct: 62  KFEDIKDWSDLVTPQGI-MGIFAKPDPVKMTYPETLLHHTLPLVLICDNLRDPGNLGTIL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--------- 202
           RSA    C  ++ TK    +    + ++  GA   +P +           +         
Sbjct: 121 RSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPPDTRVYVA 180

Query: 203 -----------------HSW-------GFQTIGLSSDSKK-----------PLEQEIKND 227
                              W        F       D+K              + +    
Sbjct: 181 DNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGA 240

Query: 228 KIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A+++G E  G+  ++ + A S       + +   + +LN + AA++ L+  +   
Sbjct: 241 PAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297


>gi|149724758|ref|XP_001502222.1| PREDICTED: similar to RNA methyltransferase-like protein 1 [Equus
           caballus]
          Length = 420

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 109/324 (33%), Gaps = 75/324 (23%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  +     K++ S     KSR    +   + L G   ++ AL   +  + ++       
Sbjct: 93  RYDKALPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGA--VPKVFF----F 146

Query: 79  ARLDWDANLPHP-------FPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTL 126
           +RLD+   LP           VK    +    +V      QG+  +   P    +  P  
Sbjct: 147 SRLDYIKELPTDKLKGVSLIKVKFEDIKDWSDLV----TPQGIMGIFAKPDHVKMTYPET 202

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
               +  LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   
Sbjct: 203 QLRHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQ 262

Query: 187 IPYIRISNLTDALQKM------------------------HSWGFQT------------- 209
           +P I   +       +                           G+               
Sbjct: 263 VPIINNLDWETVPNYLPTDTRVYVADNCGLYAQAQTSNKASDHGWVCDRQLSKLHKYEEE 322

Query: 210 IGLSSDSKK---------PLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHM 256
           + L + + K           + +      A+++G E  G+  ++ + A         + +
Sbjct: 323 VDLETGASKGWLPELEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAENTGGKRLVIPV 382

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
              + +LN + AA++ L+  +   
Sbjct: 383 VPGVDSLNSAMAASILLFEGKRQL 406


>gi|261414776|ref|YP_003248459.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371232|gb|ACX73977.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 250

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 2/169 (1%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           + + LE  P      +  +  Q  +++ ++    N+G+I+RS   F  +G+  +      
Sbjct: 81  RDVYLEQEPGDREVANE-KPIQFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSCSP 139

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIA 230
           +   +  +A G  E IP  R  +  D ++     G++ I L +    P +      +K  
Sbjct: 140 DHVTVKSAARGCQEWIPIKRWDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGL 199

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++LG E  G+ P+    AT    + M G   ++NV+ A A+  +  +++
Sbjct: 200 IVLGNEELGIAPEIMAEATMKVTIPMAGRKASMNVAGAFAIMAFCLRSN 248


>gi|149195840|ref|ZP_01872897.1| spoU protein [Lentisphaera araneosa HTCC2155]
 gi|149141302|gb|EDM29698.1| spoU protein [Lentisphaera araneosa HTCC2155]
          Length = 233

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   + +VL+++   HN  AILR+A AF    I   +  + ++ A   + +  A + +  
Sbjct: 39  RTEHICLVLENLYQEHNASAILRNADAFGIQNINVIE--NDNDFAANKEVSMSAHKWLDI 96

Query: 190 -----IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPK 243
                 +I N    L  +   G++    S   +   L++   ++ IAL  G E  GL   
Sbjct: 97  KAWNESKIDNTVKCLSALKKQGYKICATSLRPESITLDELPVDEPIALCFGTELTGLSEV 156

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             E A  M ++ M G I++ NVS A+A++L   +N   +
Sbjct: 157 AHEMADYMTYIPMNGFIQSFNVSVASALSLSHLRNKMKR 195


>gi|33151661|ref|NP_873014.1| putative tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33147882|gb|AAP95403.1| conserved putative tRNA/rRNA methyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 349

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 112/265 (42%), Gaps = 24/265 (9%)

Query: 25  RNHRDYKKMQSFNQKSR-----HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           +N++   + ++     R       ++ E + +YG +   +      + I +L AT     
Sbjct: 84  KNNKLATEKKTGPLSPRAPEKIKKNRAEEMKVYGENACLSVFQQRPQAIVRLWATVEGAK 143

Query: 80  RLDWDAN--LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQ 133
           +L  + +           V    +D++ G    H  + L        +L   L+  R   
Sbjct: 144 KLADELSYLANQKKAYHIVDRIEMDRVTGT-PHHGDICLLVKKSAPFILEGYLNIPRKRD 202

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L++LD++++  NIG I+R+   ++  GII  +      S+  A+ A G LE I  +   
Sbjct: 203 CLVLLDNIHNAQNIGGIMRTCAFYNVKGIIV-ENSDTLHSSAAARVAEGGLEFIRPLESK 261

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETA---T 249
           +   AL ++   G+Q + L+ + + P L +     K+  +L  E   +   TQ+ A    
Sbjct: 262 HKEIALTQLRQAGYQIVHLTRNKQAPSLAKTTLAAKVVFVL-NE---IP--TQDIAYPND 315

Query: 250 SMAHLHMPGII-KALNVSNAAAVAL 273
           +   L    ++  +LNV+ +A + L
Sbjct: 316 TTVQLSFENLLNSSLNVTVSAGILL 340


>gi|281358057|ref|ZP_06244541.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281315430|gb|EFA99459.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 182

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 2/152 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V   QL +VLD +   HN G I R A A     II            L K+A GA + 
Sbjct: 21  DFVDVKQLCIVLDRLRSAHNTGNIFRIAEAVGAAEIIACGYTPAPPHPKLEKTAMGADKM 80

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +P   + +   A++ +   G++ I  +      +   +      +A++ G E  G+ P+T
Sbjct: 81  VPCRVMPDSATAVRTLREEGYRMILAAECMPGSRFAWEMKYEFPLAIVFGNEALGVAPET 140

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            E    +  L M G   ++NV N+AA  LY  
Sbjct: 141 LELVDGLVSLPMFGEKSSINVGNSAAAILYAV 172


>gi|302843184|ref|XP_002953134.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
           nagariensis]
 gi|300261521|gb|EFJ45733.1| hypothetical protein VOLCADRAFT_63297 [Volvox carteri f.
           nagariensis]
          Length = 182

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 16/174 (9%)

Query: 115 ALETAPLLSP--TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           A E  P   P  +          ++   V+  HNIG I+RSA AF    +        + 
Sbjct: 3   AAEELPAAEPCSSASGTAGPPCFIITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNT 62

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTIGLS-SDSKKPLEQEIKND--K 228
                  + G+  H+ +     L   +Q +    G + +G+   +   P+ +        
Sbjct: 63  FG-----SHGSDAHVAFKHFDTLQQCVQHLKDVEGCRVLGIEICEGALPVHEHPFTGSSP 117

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
            A +LG EG+GL  +         ++   G    +LNV+ AA++ L+    HFA
Sbjct: 118 TAFLLGNEGQGLSERQMALCDGFVYIPQHGPGTASLNVAVAASIVLH----HFA 167


>gi|126664480|ref|ZP_01735464.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
 gi|126630806|gb|EBA01420.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
          Length = 262

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 101/274 (36%), Gaps = 41/274 (14%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARLDWD 84
           D KK+Q    + ++     +  + G H V          P+ K  +L  T          
Sbjct: 5   DIKKLQ----QKKYREAFGHYLVEGEHLVLELQKAASTQPALKSSELYVT-------AAY 53

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-----------ETAPLLSPTLDAVRNSQ 133
            +   PF    +  + + ++   +   QG+             E  P+++P   +     
Sbjct: 54  EHWQSPFTTHLIGERQMARLADTQ-TPQGILAIVPIKVPIIAPEVTPIVTPMAQSQERPA 112

Query: 134 L--------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +         + L  V DP N+G ILR+   F     + +       +  + +++ GA+ 
Sbjct: 113 INTQHSPAKAIYLHEVQDPGNLGTILRTLAWFGGFRCLLSPGSVDPYNPKVVRASMGAIF 172

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           H+P      L    ++ H    +   L  + +  L +    D    + G E +G+  +  
Sbjct: 173 HLPLETDVELASLSERFH----RLACLDLNGR-SLTEPGFADHDCYLFGNEARGIPAQAL 227

Query: 246 ETATSMAH-LHMPGIIKALNVSNAAAVALYITQN 278
           +   + A+ ++  G I++LN+++A  +  +    
Sbjct: 228 DELNATAYTINGKGQIESLNLASAVNICSWELMR 261


>gi|166197675|ref|NP_899086.2| RNA methyltransferase-like protein 1 [Mus musculus]
 gi|81889274|sp|Q5ND52|RMTL1_MOUSE RecName: Full=RNA methyltransferase-like protein 1
 gi|56800171|emb|CAI35103.1| RNA methyltransferase like 1 [Mus musculus]
 gi|148680911|gb|EDL12858.1| RNA methyltransferase like 1 [Mus musculus]
          Length = 418

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 103/316 (32%), Gaps = 61/316 (19%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRK----IFQLLAT 74
           +  +     +++ S     KSR    +   + L G   ++ AL   +        +L   
Sbjct: 93  RYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYV 152

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNS 132
           K        D +L     VK    +    +V  + +  G+  +  P+    P        
Sbjct: 153 KELPVDKLKDVSL---IKVKFEDIKDWSDLVTPQGI-MGIFAKPDPVKMTYPETPLHHTL 208

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L+++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P +  
Sbjct: 209 PLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNN 268

Query: 193 SNLTDALQKM--------------------------HSW-------GFQTIGLSSDSKK- 218
                    +                            W        F       D+K  
Sbjct: 269 VEWETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTR 328

Query: 219 ----------PLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALN 264
                       + +      A+++G E  G+  ++ + A S       + +   + +LN
Sbjct: 329 KDWLPKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLN 388

Query: 265 VSNAAAVALYITQNHF 280
            + AA++ L+  +   
Sbjct: 389 SAMAASILLFEGKRQL 404


>gi|120436002|ref|YP_861688.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117578152|emb|CAL66621.1| TrmH family tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 174

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 3/156 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   ++++LD++    N+G++ R A AF  + I+        +S  L ++A    + + +
Sbjct: 15  RKFPIILLLDNITSEANLGSMFRLADAFGVEKIVFCGSEPNLQSNRLKRTARNTFKTVQF 74

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQE 246
               +    ++ + + G++ I +  + S  P+      +++K+ LI G E  G+  +   
Sbjct: 75  EFFEDSVKTIKNLKTEGYKNIAIEITSSSNPIGSFSLNEDEKLVLIAGNERHGISAEVLN 134

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + H+ M G   ++NV+ +  +ALY     F K
Sbjct: 135 LCDELYHIEMFGENSSMNVAQSVGIALYEITKAFNK 170


>gi|194874184|ref|XP_001973355.1| GG13393 [Drosophila erecta]
 gi|190655138|gb|EDV52381.1| GG13393 [Drosophila erecta]
          Length = 405

 Score =  126 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 96/297 (32%), Gaps = 34/297 (11%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           + ++ +L         + +  +  +   +   + + G   +  AL    +    L + K+
Sbjct: 108 NLNFVRLTLQDPLTSTLLTTVRSRKRRDKNRQIIVEGRRLIQEALQCGLKMEALLFSQKD 167

Query: 77  ALARLDWDANLPH---PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS- 132
            LA +  +  +        +  VP   +            + +   P        +    
Sbjct: 168 QLALVKEEVGMAQLGTGTKIYKVPQHDLKTWSSLVTPPGLMGIFDRPSDKGLEKNLAEQQ 227

Query: 133 -------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
                   + +V D++ +P+N+G+I+R+  A  C  ++ T        +   +   G   
Sbjct: 228 RLGSQPFPITVVCDNIREPNNLGSIIRTCGALPCSQVVVTHGCCDPWESKALRGGCGGQF 287

Query: 186 HIPY---IRISNLTDALQKMHSWGFQTIGLSS-----DSKKPLEQEI---KNDKIALILG 234
            +P    +    L   +    +         S     ++ + ++            LI+G
Sbjct: 288 RVPIRDDVTWEELALTIPPEAADDCHVFIAESNQRKRENNQTIDYADIQSLGAHNLLIIG 347

Query: 235 AEGKGLRPKT---------QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+  +          +       ++ +   I +LNV++A  + L+  +    +
Sbjct: 348 GESHGVSEEAYRFLNMVGGKGKC---IYIPLAAGIDSLNVASALTLLLFELRRKLRQ 401


>gi|302326903|gb|ADL26104.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 241

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 75/169 (44%), Gaps = 2/169 (1%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           + + LE  P      +  +  Q  +++ ++    N+G+I+RS   F  +G+  +      
Sbjct: 72  RDVYLEQEPGDREVANE-KPIQFAVLVHNLRSAFNVGSIIRSTDCFGLEGVHLSGYSCSP 130

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIA 230
           +   +  +A G  E IP  R  +  D ++     G++ I L +    P +      +K  
Sbjct: 131 DHVTVKSAARGCQEWIPIKRWDSPFDCIKWHKENGYEIIALETGEDIPSINNVKWPEKGL 190

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++LG E  G+ P+    AT    + M G   ++NV+ A A+  +  +++
Sbjct: 191 IVLGNEELGIAPEIMAEATMKVTIPMAGRKASMNVAGAFAIMAFCLRSN 239


>gi|26380829|dbj|BAC25446.1| unnamed protein product [Mus musculus]
 gi|127799761|gb|AAH90975.2| RNA methyltransferase like 1 [Mus musculus]
          Length = 311

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 97/297 (32%), Gaps = 59/297 (19%)

Query: 39  KSR-HTSQPENLFLYGVHTVSAALNNPSRK----IFQLLATKNALARLDWDANLPHPFPV 93
           KSR    +   + L G   ++ AL   +        +L   K        D +L     V
Sbjct: 5   KSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSL---IKV 61

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           K    +    +V  + +  G+  +  P+    P         L+++ D++ DP N+G IL
Sbjct: 62  KFEDIKDWSDLVTPQGI-MGIFAKPDPVKMTYPETPLHHTLPLVLICDNLRDPGNLGTIL 120

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--------- 202
           RSA    C  ++ TK    +    + ++  GA   +P +           +         
Sbjct: 121 RSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPPDTRVYVA 180

Query: 203 -----------------HSW-------GFQTIGLSSDSKK-----------PLEQEIKND 227
                              W        F       D+K              + +    
Sbjct: 181 DNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGA 240

Query: 228 KIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             A+++G E  G+  ++ + A S       + +   + +LN + AA++ L+  +   
Sbjct: 241 PAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQL 297


>gi|241743103|ref|XP_002414182.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215508036|gb|EEC17490.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 156

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 14/155 (9%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V N +L +++D + DP N GA+LRS+  F    + TT+  S   S V++K++SGALE + 
Sbjct: 2   VLNDRLWVLMDRIQDPMNFGAVLRSSYYFGVQKVFTTRTDSCRLSPVVSKASSGALEVMD 61

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS---------DSKKPLEQEIK--NDKIALILGAEG 237
              + +  + LQ + S G+  +G +            +  L   +   +    LI+G E 
Sbjct: 62  LYSLQSPAEFLQALKSKGWWVVGTAGVKQDGPFEAGPRSDLSWVLPPTDKPAILIVGNEN 121

Query: 238 KGLRPKTQETATSMAHL-HMPGI--IKALNVSNAA 269
           +G+ P+      S+  +        I +LNVS A 
Sbjct: 122 QGMHPELGAVCDSVLSISPAASSDLIGSLNVSVAT 156


>gi|262040314|ref|ZP_06013565.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042423|gb|EEW43443.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 131

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RS   F   G++        ES    ++A G  EH+  I   +  D L +    G+  +
Sbjct: 1   MRSCAHFGVKGVVVQDAG-VLESGAAIRTAEGGAEHVEPITGDSFIDTLDQFRKAGYAIV 59

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             SS +  PL +     K+ L LG E  GL      +A     +   G +++LNVS A  
Sbjct: 60  STSSHNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATG 119

Query: 271 VAL--YITQN 278
           V L  +  QN
Sbjct: 120 VLLAEWWRQN 129


>gi|119952855|ref|YP_945064.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
           91E135]
 gi|119861626|gb|AAX17394.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia turicatae
           91E135]
          Length = 232

 Score =  125 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 76/194 (39%), Gaps = 9/194 (4%)

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
             +  V  + + +I   E + + +       +   L   R + L +VL+ +  P N  A 
Sbjct: 10  IKLYFVSNEILKRI---EILSEFITQRRRERIDEVLSN-RTNYLTLVLEDIFQPQNASAT 65

Query: 151 LRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +R+        I   +  +    +  +     GA + I  I+   +  A   +   G++ 
Sbjct: 66  MRTIEILGLSNIHIIETNNTYTLNPGVV---LGASKWIDIIKYQCVESAFDNLKGNGYKI 122

Query: 210 IGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +  S D++   L+    +DK+A+  G E  GL     E A     + M G  ++ N+S A
Sbjct: 123 VATSLDNEAIFLDDFPIDDKMAIFFGTELTGLSNTVLENADLHLKIPMYGFTQSYNLSVA 182

Query: 269 AAVALYITQNHFAK 282
            ++  Y   +   K
Sbjct: 183 VSIVFYSLISRLRK 196


>gi|76643639|ref|XP_582975.2| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
          Length = 449

 Score =  125 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 112/340 (32%), Gaps = 71/340 (20%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAA 60
           I    S+   + ++S   +  +     K++ S     KSR    +   + L G   ++ A
Sbjct: 76  IQGPASQTPSTWEES-GLRYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADA 134

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA- 115
           L   +  + Q+       +RL++   LP        +  V  + I          QG+  
Sbjct: 135 LKAGA--VPQIFF----FSRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDL-VTPQGIMG 187

Query: 116 LETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           +   P    +  P         + ++ D++ DP N+G ILRSA    C  ++ TK    +
Sbjct: 188 IFAKPDHVKMTYPETQLRHTLPISLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDA 247

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKM---------HSWGFQTIGLSSDSKK---- 218
               + ++  GA   +P I   +       +          + G      +  S K    
Sbjct: 248 WEPKVLRAGMGAHFQVPIINNLDWEAVPDHLPTDTRVYVADNCGLYVQAQAQRSNKASDY 307

Query: 219 ----------------------------------PLEQEIKNDKIALILGAEGKGLRPKT 244
                                               + +      A+++G E  G+  ++
Sbjct: 308 GWVRDQRPLKFHEYEEEDLESGASQCWLPELEVQSYDSDWTEAPAAVVIGGETHGVSLES 367

Query: 245 QETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + A S       + +   + +LN + AA++ L+  +   
Sbjct: 368 LQLAESTGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQL 407


>gi|312601120|gb|ADQ90375.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 202

 Score =  125 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 94/209 (44%), Gaps = 12/209 (5%)

Query: 70  QLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
           ++L TKN + +            V  V  + ++K+   ++  + +A+  +       D +
Sbjct: 2   RILTTKNNVEKYQKV-----NVDVVIVSQKILEKLSQHKSPSEVIAVCKSKKQRKIKDFL 56

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +S+ L++L+++ +P N+G I+R+  +F  D + +        +     ++ GA+     
Sbjct: 57  -DSKRLVILENIQNPGNLGTIIRNCYSFGFDLVYSG---VDLYNVKTISASKGAIFMANI 112

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETA 248
             + N++D  +           L  D++  ++ + I      +I G EGKG+  K  + A
Sbjct: 113 YFLKNISDFFKFGPKQEIIISSLEKDAQNLMDFKVIPEKSYTIIFGNEGKGVSKKLNKLA 172

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               ++ +    ++LN+++A A+  +  Q
Sbjct: 173 DKKIYIPI--NFESLNIASANAIFCHFFQ 199


>gi|309387057|gb|ADO67778.1| TpaI [Nocardiopsis sp. TFS65-07]
          Length = 269

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 92/217 (42%), Gaps = 4/217 (1%)

Query: 63  NPSRKIFQLLATKNA-LARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
           N   +  ++  +    +     D    +  P++ V    ++KI   E   +   L   P 
Sbjct: 45  NAGVEFIEIYFSDATPVDPKIADLCEKNRIPIRLVDYTVVNKIFKGERKAKAFGLARVPR 104

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSA 180
            +   D       ++VLD V    NIGAI+R+++     GI+      +      L +++
Sbjct: 105 PAKFHDIENRPGDIIVLDGVKIVGNIGAIVRTSLGLGAAGIVLIDSDLTSIADRRLLRAS 164

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKG 239
            G +  +P + +++   A   +   G +   L S  + PL++    + K+ L+ G+E  G
Sbjct: 165 RGYVFSLPIV-LTDRESAASFIRDSGVELAVLDSHGETPLKEIGNIDRKMTLLFGSEKGG 223

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              + +E A++   + M    ++LNVS +  V L+  
Sbjct: 224 PSERLRELASTTVSIPMISSTESLNVSVSVGVTLHQR 260


>gi|293364011|ref|ZP_06610747.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
 gi|292552501|gb|EFF41275.1| RNA methyltransferase, TrmH family [Mycoplasma alligatoris A21JP2]
          Length = 201

 Score =  125 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ LD++ DP N+G I+R + +F  D +I   +     S    +S  GA+ +   I ++N
Sbjct: 61  VVFLDNLQDPGNVGTIIRLSKSFDIDTLIV--KNFDIYSPKCLRSTQGAIFNQNIILVNN 118

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
             D L+++   GF+ +    + +   L     N K  +I G EG G+  +    +    +
Sbjct: 119 -NDLLKELQHSGFEIVTTVLNQESIELNNFNFNKKTVVIFGNEGSGIEKEIINNSNKKIY 177

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + +    ++LNV+  AA+ L
Sbjct: 178 IPIS--FESLNVATCAAIVL 195


>gi|149053706|gb|EDM05523.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_b
           [Rattus norvegicus]
          Length = 221

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL-----PHPFPVKTVPPQTIDKIV 105
           L+GV     AL    R + +LL            A L         PV     Q +D + 
Sbjct: 50  LFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAELLRVAEARGIPVLRPRRQKLDALC 109

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS-------QLLMVLDHVNDPHNIGAILRSAVAFS 158
           G + VHQG+ +E + L     D   ++       QL +VL+ + DP N+GA++RSA    
Sbjct: 110 GYQ-VHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGAVMRSAYFLG 168

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
            D +IT++R S   + V++K+++GA+E +      +L   LQ
Sbjct: 169 VDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQ 210


>gi|229820816|ref|YP_002882342.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566729|gb|ACQ80580.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 281

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 94/245 (38%), Gaps = 14/245 (5%)

Query: 22  KLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL 81
           ++   +  +++ Q+         +   L + GV  ++ A+ +       L     +L+  
Sbjct: 12  RVSSRNATFQQWQALLTNRTKRHRAGALLVSGVRPLTVAVESGHVVREWLHGETGSLSAW 71

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQG-----LALETAPLLSPTLDAVRNSQLLM 136
             D     P     V  +   ++ GKE   QG       +E A      LDA  +  L +
Sbjct: 72  ARDLVAHAPAQRFVVADELRHELGGKE---QGTPELLAVVEMADGDIRRLDAAADF-LGV 127

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +LD  + P N+G I+RS  A     ++ T   +        ++++G++  +P +  +   
Sbjct: 128 LLDRPSSPGNVGTIIRSVDALGGHAVVVTGHATDPYDPQAVRASTGSVFGVPIVSAAAPR 187

Query: 197 DALQK---MHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           + L+    +   G   + +     +++ +        + L+ G E  GL    ++ A  +
Sbjct: 188 EVLEWVDGVRRAGVPLRLVATDERAERDVWDHDLTGPVLLLTGNETTGLSQAWRDAADDV 247

Query: 252 AHLHM 256
             + M
Sbjct: 248 VRIPM 252


>gi|74190703|dbj|BAE28150.1| unnamed protein product [Mus musculus]
          Length = 418

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 102/316 (32%), Gaps = 61/316 (19%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRK----IFQLLAT 74
           +  +     +++ S     KSR    +   + L G   ++ AL   +        +L   
Sbjct: 93  RYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYV 152

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL--SPTLDAVRNS 132
           K        D +L     VK    +    +V  + +  G+  +  P+    P        
Sbjct: 153 KELPVDKLKDVSL---IKVKFEDIKDWSDLVTPQGI-MGIFAKPDPVKMTYPETPLHHTL 208

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L+++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P +  
Sbjct: 209 PLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNN 268

Query: 193 SNLTDALQKM--------------------------HSW-------GFQTIGLSSDSKK- 218
                    +                            W        F       D+K  
Sbjct: 269 VEWETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTR 328

Query: 219 ----------PLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALN 264
                       + +       +++G E  G+  ++ + A S       + +   + +LN
Sbjct: 329 KDWLPKLEVQSYDLDWTGAPAVVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLN 388

Query: 265 VSNAAAVALYITQNHF 280
            + AA++ L+  +   
Sbjct: 389 SAMAASILLFEGKRQL 404


>gi|330007674|ref|ZP_08306014.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
 gi|328535397|gb|EGF61878.1| RNA methyltransferase, TrmH family [Klebsiella sp. MS 92-3]
          Length = 131

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +RS   F   G++        ES    ++A G  EH+  I   +  D L +    G+  +
Sbjct: 1   MRSCAHFGVKGVVVQDAG-VLESGAAIRTAEGGAEHVEPITGDSFIDTLDRFRKAGYAIV 59

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             SS +  PL +     K+ L LG E  GL      +A     +   G +++LNVS A  
Sbjct: 60  STSSHNGTPLFKAELPKKMVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATG 119

Query: 271 VAL--YITQN 278
           V L  +  QN
Sbjct: 120 VLLAEWWRQN 129


>gi|332519939|ref|ZP_08396403.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044498|gb|EGI80692.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 176

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 116 LETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           L+ + L   ++D  + +    +++VLD++   +NIG++ R++ AF  + I      +   
Sbjct: 4   LKNSELDRLSVDDFKQASKTPIIIVLDNIRSLNNIGSVFRTSDAFLVEKIYLCGITATPP 63

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---I 229
              + K+A G+ + + +       + ++K+     +   +       +  +   +K    
Sbjct: 64  HKDINKTALGSTDAVSWEYAKTTMEVIEKLKIKDVKICSIEQAENATMLNDFTVEKNTTY 123

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           AL+ G E KG+       + S+  +   G   +LN+S +  V ++
Sbjct: 124 ALVFGNEVKGVDQNIVNASDSVIEIPQFGTKHSLNISVSCGVVVW 168


>gi|156386580|ref|XP_001633990.1| predicted protein [Nematostella vectensis]
 gi|156221067|gb|EDO41927.1| predicted protein [Nematostella vectensis]
          Length = 274

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 93/276 (33%), Gaps = 41/276 (14%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +   + L G+  V  AL      I    + KN + +L       +  P   V  +T+
Sbjct: 3   YRDRHNRILLEGLRIVHDALLANMEPITIFYSNKNLIDKLTSKLPSRYFVP---VDDKTM 59

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             ++        + +   P     +++     L ++ D V DP N+G I+R+  A  C  
Sbjct: 60  KNLLTALTPPGIVGVFKKPCSQLKIES-NVLPLTVICDRVKDPSNLGTIVRTCAAAGCQA 118

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS----------------- 204
           +ITT+  +      + +  +G    +P   + +       +                   
Sbjct: 119 LITTEYSTDLWDPKVLRGGAGGHFRVPLYGLLSWKQIADMLGDDTRLYLAESDNTGKIII 178

Query: 205 --WGFQTI----------GLSSDSKK---PLEQEIKN-DKIALILGAEGKGLRPKTQETA 248
             W +  +           L+ D      P  +        ALI+G E  G+  + Q  A
Sbjct: 179 SPWKYFVVENPISWHCYGTLNLDLGSIIIPYFEVDWTLGPSALIVGGETTGISTEAQMLA 238

Query: 249 T----SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                   H+ M G I +L+   + A+ +Y      
Sbjct: 239 CGERGQAVHIPMVGNIDSLSAGISVALIVYEAFRQI 274


>gi|73967329|ref|XP_853914.1| PREDICTED: similar to RNA methyltransferase like 1 [Canis
           familiaris]
          Length = 423

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 111/342 (32%), Gaps = 75/342 (21%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +S  ++   +      Y K     R    + +  +      +   + L G   ++ AL  
Sbjct: 78  VSASQTSCAWEESGLRYDKALPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKA 137

Query: 64  PSRKIFQLLATKNALARLDWDANLPHP-------FPVKTVPPQTIDKIVGKEAVHQGLA- 115
            +  + ++       +RL++   LP           VK    +    +V      QG+  
Sbjct: 138 GA--VPKVFF----FSRLEYIKELPIDKLKGVSLIKVKFEDIKDWSDLV----TPQGIMG 187

Query: 116 LETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           +   P    +  P         LL++ D++ DP N+G ILRSA    C  ++ TK     
Sbjct: 188 IFAKPDHVKMTYPETQLRHLLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDP 247

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDA--------------------------------- 198
               + ++A GA   +P I   +                                     
Sbjct: 248 WEPKVLRAAMGAHFQVPIINNLDWETLPNYLPTDTRVYVADNCGLYAQAQMSDKASDHGW 307

Query: 199 -----LQKMHSWGFQTIGLSSD-----------SKKPLEQEIKNDKIALILGAEGKGLRP 242
                L K+H +  +      +             +  + +      A+++G E  G+  
Sbjct: 308 VCDRRLSKLHKYEEEEEEEDLEPGASKAWLPELEVQSYDLDWTEAPAAVVIGGETHGVSL 367

Query: 243 KTQETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++ + A S       + +   + +LN + AA++ L+  +   
Sbjct: 368 ESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGRRQL 409


>gi|322515005|ref|ZP_08068015.1| SpoU protein [Actinobacillus ureae ATCC 25976]
 gi|322118994|gb|EFX91166.1| SpoU protein [Actinobacillus ureae ATCC 25976]
          Length = 365

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 15/241 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
             ++ E + +YG +   A        I +L AT     +L    +    +      V   
Sbjct: 122 KKNRAEEMKVYGENACLALFKQRPDAIVRLWATVEGAKKLGDMLSYLAEYKKAYHVVDRA 181

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            ++++ G E  H  + L         L   L   R    L++LD VN+  N+G I+R+  
Sbjct: 182 EMERVTGTE-HHGDVCLLVKKAVPFSLEGYLQVPRKRDCLVLLDAVNNAQNVGGIIRTCA 240

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
            +   G+I         S+  A+ A G LE +  +   +   AL ++ + G+Q + L+ +
Sbjct: 241 FYGVSGVIVESA-DTLNSSAAARVAEGGLEFVRPLETKHKQIALTQLRNAGYQIVHLTRN 299

Query: 216 S-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAVA 272
                L +    +K   IL      +  +  E    +   L     + + LNV+ +A + 
Sbjct: 300 KQATSLAKTKLAEKTVFIL----SDVPAQDIEYPEDTTVQLSFENPLNSGLNVAVSAGIV 355

Query: 273 L 273
           L
Sbjct: 356 L 356


>gi|116620879|ref|YP_823035.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224041|gb|ABJ82750.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 180

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 1/155 (0%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           + V      ++LD+V   +N+G+  R+A A S + +  +   +    + + K+A GA   
Sbjct: 16  EDVGPLPAAVLLDNVRSMYNVGSFFRTADAASVEKLYLSGITAQPPKSAITKTALGAENT 75

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           + +         ++K  + G++   + +S     L        + +I G E  G+RP   
Sbjct: 76  VCWEHAWEARPLVEKARAQGYEIAAVETSVHAVDLFDWTPRFPVLVIFGHEVDGIRPAIS 135

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +   + M G   +LNV+ A  V +Y     +
Sbjct: 136 ALCDTHVRIPMLGAKHSLNVATAGGVVIYELLRKY 170


>gi|311268037|ref|XP_003131858.1| PREDICTED: RNA methyltransferase-like protein 1-like [Sus scrofa]
          Length = 422

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 108/323 (33%), Gaps = 71/323 (21%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  +     K++ S     KSR    +   + L G   ++ AL   +  + ++       
Sbjct: 93  RYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGA--VPKIFF----F 146

Query: 79  ARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAV 129
           +RL++   LP        +  V  + I          QG+  +   P    +  P     
Sbjct: 147 SRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDL-VTPQGIMGIFAKPDHAKMTYPETQLR 205

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P 
Sbjct: 206 HTLPLLLICDNLRDPGNLGTILRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPI 265

Query: 190 IRISNLTDALQKM------------------------HSWGF-QTI------------GL 212
           I   +     + +                         +  +                G 
Sbjct: 266 INNLDWETVPKYLPTDTRVYVADNCGLYAQAQARASTKASDYGWVCDRRAKLHQYEEEGE 325

Query: 213 SSDSK-----------KPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMP 257
             +S            +  + +      A+++G E  G+  ++ + A S       + + 
Sbjct: 326 DVESGASKGWLPELQVQTYDADWTEAPAAVVIGGETHGVSLESLQLAESTGGGRLLIPVV 385

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
             + +LN + AA++ L+  +   
Sbjct: 386 PGVDSLNSAMAASILLFEGKRQL 408


>gi|30047088|gb|AAH50614.1| RNA methyltransferase like 1 [Homo sapiens]
          Length = 420

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 103/318 (32%), Gaps = 63/318 (19%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  + +   +++ S     KSR    +   + L G   +S AL   +       +    L
Sbjct: 93  RYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYL 152

Query: 79  ARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNS 132
             L  D         VK    +    +V      QG+  +   P    +  P      + 
Sbjct: 153 KELPVDKLKGVSLIKVKFEDIKDWSDLV----TPQGVMGIFAKPDHVKMTYPKTQLQHSL 208

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I  
Sbjct: 209 PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINN 268

Query: 193 SNLTDALQKM------------------------HSWGFQT-----------------IG 211
                    +                           G+                    G
Sbjct: 269 LEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETG 328

Query: 212 LSSD-----SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKA 262
            S D       +  + +      A+++G E  G+  ++ + A S       + +   + +
Sbjct: 329 ASQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDS 388

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA++ L+  +   
Sbjct: 389 LNSAMAASILLFEGKRQL 406


>gi|297486581|ref|XP_002695756.1| PREDICTED: RNA methyltransferase like 1 [Bos taurus]
 gi|296476912|gb|DAA19027.1| RNA methyltransferase like 1 [Bos taurus]
          Length = 413

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 112/340 (32%), Gaps = 71/340 (20%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAA 60
           I    S+   + ++S   +  +     K++ S     KSR    +   + L G   ++ A
Sbjct: 76  IQGPASQTPSTWEES-GLRYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADA 134

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA- 115
           L   +  + Q+       +RL++   LP        +  V  + I          QG+  
Sbjct: 135 LKAGA--VPQIFF----FSRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDL-VTPQGIMG 187

Query: 116 LETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
           +   P    +  P         + ++ D++ DP N+G ILRSA    C  ++ TK    +
Sbjct: 188 IFAKPDHVKMTYPETQLRHTLPISLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDA 247

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKM---------HSWGFQTIGLSSDSKK---- 218
               + ++  GA   +P I   +       +          + G      +  S K    
Sbjct: 248 WEPKVLRAGMGAHFQVPIINNLDWEAVPDHLPTDTRVYVADNCGLYVQAQAQRSNKASDY 307

Query: 219 ----------------------------------PLEQEIKNDKIALILGAEGKGLRPKT 244
                                               + +      A+++G E  G+  ++
Sbjct: 308 GWVRDQRPLKFHEYEEEDLESGASQCWLPELEVQSYDSDWTEAPAAVVIGGETHGVSLES 367

Query: 245 QETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            + A S       + +   + +LN + AA++ L+  +   
Sbjct: 368 LQLAESTGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQL 407


>gi|94502287|ref|ZP_01308767.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833855|ref|YP_001598051.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           GWSS]
 gi|94451153|gb|EAT14098.1| tRNA/rRNA methyltransferase [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206345|gb|ABS30655.1| putative tRNA:rRNA methyltransferase [Candidatus Sulcia muelleri
           GWSS]
          Length = 239

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 16/238 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YG++ +  A+    +     +  K    +L       +   +              +  
Sbjct: 6   IYGINPLYEAIKYKKKIYKIFIIKKFINFKLKKIIKFSYLKKIPIFER------FNFKKN 59

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +QG+     P+    ++ +           LL++LD + D  N G+I+R++     D II
Sbjct: 60  NQGVFAIIDPIEFYKIEDIIPNIYYNGKIPLLLILDSITDVRNFGSIVRTSACTGVDAII 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +       ++   K++SG L  +P  +  N+   ++ + ++G Q I ++  +       
Sbjct: 120 ISNNN--IVNSDSIKTSSGGLFKVPICKEKNIIKIIKILKNYGIQIIAVTEKTDYLCYNI 177

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQNHF 280
              +  A ILG+E KG+         +   L  +   + +LNVS A    LY      
Sbjct: 178 NYRNPTAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQR 235


>gi|15079419|gb|AAH11550.1| RNA methyltransferase like 1 [Homo sapiens]
 gi|312153368|gb|ADQ33196.1| RNA methyltransferase like 1 [synthetic construct]
          Length = 420

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 103/318 (32%), Gaps = 63/318 (19%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  + +   +++ S     KSR    +   + L G   +S AL   +       +    L
Sbjct: 93  RYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYL 152

Query: 79  ARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNS 132
             L  D         VK    +    +V      QG+  +   P    +  P      + 
Sbjct: 153 KELPVDKLKGVSLIKVKFEDIKDWSDLV----TPQGIMGIFAKPDHVKMTYPKTQLQHSL 208

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I  
Sbjct: 209 PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINN 268

Query: 193 SNLTDALQKM------------------------HSWGFQT-----------------IG 211
                    +                           G+                    G
Sbjct: 269 LEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETG 328

Query: 212 LSSD-----SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKA 262
            S D       +  + +      A+++G E  G+  ++ + A S       + +   + +
Sbjct: 329 ASQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDS 388

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA++ L+  +   
Sbjct: 389 LNSAMAASILLFEGKRQL 406


>gi|311696507|gb|ADP99380.1| tRNA/rRNA methyltransferase (SpoU) [marine bacterium HP15]
          Length = 242

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 90/258 (34%), Gaps = 24/258 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN----NPSRKIFQLLATKNALARL 81
           N  D KK+     + ++     +  + G H V          P+ K  +L  T       
Sbjct: 2   NLADIKKLH----QKKYRQSFGHYLVEGEHLVLELQKATDGQPALKASELYVT------- 50

Query: 82  DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
               +   PF    +  + + ++       QG+         P    +    +   L  V
Sbjct: 51  GAYEHWQSPFRTHVISERQMAQLADTR-TPQGILALVPMPERPAEPVLGEKAIY--LHEV 107

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            DP N+G ILR+   F     + +       +  + +++ GAL H+P      LT    +
Sbjct: 108 QDPGNLGTILRTLAWFGGFRCLLSPGSVDPFNPKVVRASMGALFHVPLETDVALTSLPDR 167

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH-LHMPGII 260
             S       L  +    +      +    + G E +G+  +  +   ++ + +   G I
Sbjct: 168 YQS----LACLDLNGG-SMASRGFREHDCYLFGNEARGVPREALDQLKAVPYSIQGQGQI 222

Query: 261 KALNVSNAAAVALYITQN 278
           ++LN+++A  +  Y    
Sbjct: 223 ESLNLASAVNMCTYELMR 240


>gi|330805649|ref|XP_003290792.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
 gi|325079070|gb|EGC32689.1| hypothetical protein DICPUDRAFT_81506 [Dictyostelium purpureum]
          Length = 591

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 101/288 (35%), Gaps = 71/288 (24%)

Query: 56  TVSAALNNPSRKIFQLLAT--------KNALARLDWDANLPHPFPVKTVPP--QTIDKIV 105
            +          I +L+          K     + +       + + T P   + + K+ 
Sbjct: 249 PILEVFKKRKEDIVKLVVDHEFYNSNKKEIHPMIKYFTKNKKVYKIITGPNSHEELTKMS 308

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNS--------------------------------- 132
           G    H G+           +D +  +                                 
Sbjct: 309 GT-IHHGGIMAIVKKKYPVPIDVLMENEIERYRLYETTPIATHSFSQHIKGQELAKKKQI 367

Query: 133 --------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-----KRYSP--SESAVLA 177
                    +++ LD V +P N+GAI R+   F    II          SP    S    
Sbjct: 368 ESLGSAARPIIVFLDGVENPMNLGAIARTCALFGVKSIIINASSTENTKSPINPFSGEAY 427

Query: 178 KSASGALEHIPYIRISNLTDALQKMHS---WGFQTIGLSSD----SKKPLEQEIKND--- 227
           +S+ GALEH+    I+  T+ ++ ++     G++ +  SS+    +   L  +  N    
Sbjct: 428 RSSRGALEHVNISIINTYTETMECLNEFTSNGWELVVTSSNLELKNNVTLYSKGSNKLLG 487

Query: 228 --KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              + L+ G+E KG+  K  + +T    +   G+I++LNV+ +A+V L
Sbjct: 488 LKPMILVFGSESKGIGKKIMKASTRCLTIPGTGLIESLNVAQSASVIL 535


>gi|297560901|ref|YP_003679875.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845349|gb|ADH67369.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 221

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 1/150 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +L ++++ V  P+N+G+ILR+A  F  D +  T   +  +   + K+A G    + + 
Sbjct: 57  EGRLALLVESVTQPYNLGSILRTAATFGVDQLWLTGNSANPDDPKVGKTALGTAAKVEHT 116

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           R+++  DAL    + G++ + +       PL        + L +GAE  G  P     A 
Sbjct: 117 RMASTADALAAARADGYRVVAVELASGALPLHAAPLEPDVCLAVGAEDHGCSPALLAGAD 176

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           ++ ++   G + +LNV+ A A+AL   +  
Sbjct: 177 AVTYVPQIGRVGSLNVAVATAIALSEARRR 206


>gi|109112660|ref|XP_001085109.1| PREDICTED: RNA methyltransferase like 1 isoform 2 [Macaca mulatta]
          Length = 420

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 100/317 (31%), Gaps = 61/317 (19%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  + +   +++ S     KSR    +   + L G   ++ AL   +       +    L
Sbjct: 93  RYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLITDALKAGAVPKMFFFSRLEYL 152

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNSQ 133
             L  D        +  V  + I          QG+  +   P    +  P      +  
Sbjct: 153 KELPVDKL--KGVSLIKVKFEDIKDW-SNLVTPQGIMGIFAKPDHVKMAYPKTQLQHSLP 209

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++ D++ DP N+G ILRSA    C  ++ TK         + ++  GA   +P I   
Sbjct: 210 LSLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAGMGAHFQVPIINNL 269

Query: 194 NLTDALQKM---------------------------------HSWGFQTI--------GL 212
                   +                                     FQ          G 
Sbjct: 270 EWETVPNYLPPDTRVYVADNCGLYAQAQMSNKASDHGWVSNQRLLKFQKYEEEEDVETGA 329

Query: 213 SSD-----SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKAL 263
           S D       +  + +      A+++G E  G+  ++ + A S       + +   + +L
Sbjct: 330 SQDWLPDVEVQSYDSDWTEAPAAVVIGGETDGVSVESLQLAESTGGKRLLIPVVPGVDSL 389

Query: 264 NVSNAAAVALYITQNHF 280
           N + AA++ L+  +   
Sbjct: 390 NSAMAASILLFEGKRQL 406


>gi|8922534|ref|NP_060616.1| RNA methyltransferase-like protein 1 [Homo sapiens]
 gi|74734265|sp|Q9HC36|RMTL1_HUMAN RecName: Full=RNA methyltransferase-like protein 1
 gi|19749337|gb|AAG17988.2|AF177344_1 unknown [Homo sapiens]
 gi|7022703|dbj|BAA91694.1| unnamed protein product [Homo sapiens]
 gi|119611048|gb|EAW90642.1| RNA methyltransferase like 1 [Homo sapiens]
 gi|307686131|dbj|BAJ20996.1| RNA methyltransferase like 1 [synthetic construct]
          Length = 420

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 103/318 (32%), Gaps = 63/318 (19%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  + +   +++ S     KSR    +   + L G   +S AL   +       +    L
Sbjct: 93  RYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYL 152

Query: 79  ARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNS 132
             L  D         VK    +    +V      QG+  +   P    +  P      + 
Sbjct: 153 KELPVDKLKGVSLIKVKFEDIKDWSDLV----TPQGIMGIFAKPDHVKMTYPKTQLQHSL 208

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I  
Sbjct: 209 PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINN 268

Query: 193 SNLTDALQKM------------------------HSWGFQT-----------------IG 211
                    +                           G+                    G
Sbjct: 269 LEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETG 328

Query: 212 LSSD-----SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKA 262
            S D       +  + +      A+++G E  G+  ++ + A S       + +   + +
Sbjct: 329 ASQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDS 388

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA++ L+  +   
Sbjct: 389 LNSAMAASILLFEGKRQL 406


>gi|256752504|ref|ZP_05493361.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748639|gb|EEU61686.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 98

 Score =  123 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 45/90 (50%)

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +   ++SN+ + ++ +   G   +G   ++ K  E+   +  +A ++G EGKG+     +
Sbjct: 1   MRIAKVSNINNTIRGLKERGLWIVGTDVNAGKSFEEVNYDFPVAFVIGNEGKGVSKLVLQ 60

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +  + M G I +LN S AA++ +Y  
Sbjct: 61  NCDFVVKIPMKGKINSLNASVAASILIYQV 90


>gi|293977966|ref|YP_003543396.1| rRNA methylase [Candidatus Sulcia muelleri DMIN]
 gi|292667897|gb|ADE35532.1| rRNA methylase, putative, group 3 [Candidatus Sulcia muelleri DMIN]
          Length = 239

 Score =  123 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 16/238 (6%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           +YG++ +  A+    +     +  K    +L       +   +              +  
Sbjct: 6   IYGINPLYEAIKYKKKIYKIFIIKKFINFKLKKIIKFSYLKKIPIFER------FHFKKN 59

Query: 111 HQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +QG+     P+    ++ +           LL++LD + D  N G+I+R++     D II
Sbjct: 60  NQGVFAIIDPIEFYKIEDIIPNIYYNGKIPLLLILDSITDVRNFGSIVRTSACTGVDAII 119

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
            +       ++   K++SG L  +P  +  N+   ++ + ++G Q I ++  +       
Sbjct: 120 ISNNN--IVNSDSIKTSSGGLFKVPICKEKNIIKIIKILKNYGIQIIAVTEKTDYLCYNI 177

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNVSNAAAVALYITQNHF 280
              +  A ILG+E KG+         +   L  +   + +LNVS A    LY      
Sbjct: 178 NYRNPTAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNVSVACGAILYEAIRQR 235


>gi|187917931|ref|YP_001883494.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
 gi|119860779|gb|AAX16574.1| tRNA (guanosine-2'-O-)-methyltransferase [Borrelia hermsii DAH]
          Length = 227

 Score =  123 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 11/195 (5%)

Query: 91  FPVKTVPPQTIDKIVG-KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGA 149
             +  V   T  +I    E + Q    +    ++  L+  R + L +VL+ +  P N  A
Sbjct: 5   LKLYFVSDDTFKRIAILSEFITQ----KRRERINEVLNN-RTNYLTLVLEDIFQPQNASA 59

Query: 150 ILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
            +R+        I   +  +    +  +     GA + I  I+   +  A   +   G++
Sbjct: 60  TMRTIEILGLSNIHIIETNNKYTLNPGVV---LGASKWIDIIKYKCVKAAFDNLKGNGYK 116

Query: 209 TIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
            +  S D+K   LE    + K+A+  G E  GL     E A     + M G  ++ N+S 
Sbjct: 117 IVATSLDNKAISLEDFPIDAKLAIFFGTELTGLSHSVLENADLHLKIPMYGFTQSYNLSV 176

Query: 268 AAAVALYITQNHFAK 282
           A A+  Y   +   K
Sbjct: 177 AVAIVFYSLISRLKK 191


>gi|62897359|dbj|BAD96620.1| RNA methyltransferase like 1 variant [Homo sapiens]
          Length = 420

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 102/318 (32%), Gaps = 63/318 (19%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  + +   +++ S     KSR    +   + L G   +S AL   +       +    L
Sbjct: 93  RYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYL 152

Query: 79  ARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNS 132
             L  D         VK    +    +V      QG+  +   P    +  P      + 
Sbjct: 153 KELPVDKLKGVSLIKVKFEDIKDWSDLV----TPQGIMGIFAKPDHVKMTYPKTQLQHSL 208

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            LL++ D++ DP N+G ILRSA    C  ++ TK         + ++  GA   +P I  
Sbjct: 209 PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDVWEPKVLRAGMGAHFRMPIINN 268

Query: 193 SNLTDALQKM------------------------HSWGFQT-----------------IG 211
                    +                           G+                    G
Sbjct: 269 LEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETG 328

Query: 212 LSSD-----SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKA 262
            S D       +  + +      A+++G E  G+  ++ + A S       + +   + +
Sbjct: 329 ASQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDS 388

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA++ L+  +   
Sbjct: 389 LNSAMAASILLFEGKRQL 406


>gi|300775607|ref|ZP_07085468.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
 gi|300505634|gb|EFK36771.1| tRNA/rRNA methyltransferase [Chryseobacterium gleum ATCC 35910]
          Length = 226

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 130 RNSQLLM-VLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHI 187
            +S  ++ V++ V    N  AI+RS  A     ++   + YS   +  + K   GA   +
Sbjct: 31  ESSDFVLPVVEDVYQFRNAAAIVRSVEACGFHKVVALQEEYSFEPNLRVTK---GADTWV 87

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              ++    ++ Q +    ++ + +S + + K L +    + IAL+ G E +G+  +  +
Sbjct: 88  EVEKLPRNMESFQNIKDRRYKIVAVSLEKNAKMLPEYEVTEPIALVFGTEMEGVSQEILD 147

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A     + M G  ++ NVS AA++ +Y  +    K
Sbjct: 148 FADETLAIPMYGFTRSFNVSVAASICMYELKQKLIK 183


>gi|146302323|ref|YP_001196914.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146156741|gb|ABQ07595.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 165

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   + +V DH+    NIG++ R + AF  + II   +  P     + K++     H+P+
Sbjct: 13  KTFPITLVCDHIYFQQNIGSLFRISEAFGVENIIFLGKDIPLTPRKINKTSRSTHLHVPH 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQE 246
             I   T+    +    F+ I L  + + KPL++ +  K+ K AL++G+E  G+  +  +
Sbjct: 73  QIIEETTELTAYLQENNFEIIALEITSNSKPLKEVLIPKDKKTALLIGSEIAGISEELLK 132

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +  + H++M G   ++NV  AA++ALY 
Sbjct: 133 ISHQIVHINMFGKNSSMNVVQAASIALYE 161


>gi|298714780|emb|CBJ25679.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 363

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLA 177
            +   LD  R     +V ++  +P+N+ A LR+  +F             YS        
Sbjct: 142 RMEDVLDQ-RTRSATLVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTYSKQARLKTM 200

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAE 236
            +A G+ + +         DA+ K+ + G+Q +      S  P+ +   +   A++LG E
Sbjct: 201 CTAMGSQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVPTAVVLGNE 260

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +G+    ++ A +   + M G +++ N+S A ++ L
Sbjct: 261 ERGISDSMRDMADATFVIPMRGFVRSFNMSVACSIIL 297


>gi|239996152|ref|ZP_04716676.1| rRNA methyltransferase [Alteromonas macleodii ATCC 27126]
          Length = 260

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 97/267 (36%), Gaps = 28/267 (10%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKI-----FQLLATKNALARLDW 83
           D KK+     + +  +Q     + G H V   +N             L  T +  A L  
Sbjct: 5   DVKKLH----QKKFRTQFGFYLVEGEHLVLELINVAQHDSSTLGDITLYVTADYEAWLKE 60

Query: 84  DANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL------- 135
             +       V+TV  Q + ++   ++  QG+     PL +  L + R+   +       
Sbjct: 61  KLDSSVSNMKVETVSSQQMQQLSDTKS-PQGIIARV-PLPNSALYSERSQTSISANKSSA 118

Query: 136 ---MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L  V DP N+G ILR+        ++ +       ++   +S+ GA+ H+     
Sbjct: 119 EKYIYLYEVQDPGNLGTILRTLAWLGDFTLLLSPNSVDPYNSKAVRSSMGAIFHVNM--- 175

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
             L  AL+ +     +   L  +    +      D    + G E +G+         + A
Sbjct: 176 -ELNVALESLGERFERFAFLDMNGSN-ITSNTFGDYQCYLFGNEARGVPVDALSKLNATA 233

Query: 253 H-LHMPGIIKALNVSNAAAVALYITQN 278
           + +   G I +LN+++A  +  Y    
Sbjct: 234 YTIAGSGKIDSLNLASAVNICAYELTR 260


>gi|51598313|ref|YP_072501.1| spoU protein [Borrelia garinii PBi]
 gi|51572884|gb|AAU06909.1| spoU protein [Borrelia garinii PBi]
          Length = 218

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIP 188
           R + L  VL+ +  P N  A +R+       D  I +KR   + +  +     G+ + I 
Sbjct: 31  RTNYLTFVLEDIFQPQNASATIRTGEILGFSDVHIISKRNKCTLNPDV---TLGSSQWIN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             R +N   AL ++ S G+  +  S D +   LE    N+K+A+  G E  GL  +  E 
Sbjct: 88  LNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFEA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G  ++ N+S A A+ +Y       K
Sbjct: 148 ADLYLKIPMHGFTQSYNISVAVAIVMYSLSIRLRK 182


>gi|258596931|ref|XP_001349687.2| apicoplast RNA methyltransferase precursor, putative [Plasmodium
           falciparum 3D7]
 gi|254688488|gb|AAC71960.3| apicoplast RNA methyltransferase precursor, putative [Plasmodium
           falciparum 3D7]
          Length = 354

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 130/316 (41%), Gaps = 54/316 (17%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHR--DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           K ++K  S   +HY    RN+   + ++    ++++ + S     ++YG+++V A L   
Sbjct: 48  KNNDKRNSYLYTHYT---RNNSSINIRRNNFLDKQNDNIS----DYIYGLNSVYAVLKKN 100

Query: 65  SRKIFQLLATKNALA---------RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA 115
            R I +++  KN               +D        ++ +    ++++VG    H  + 
Sbjct: 101 ERTIEEVIVNKNIKLNRKIHKQNYEYIFDELKKRNVSIQYMEKYKMNELVG-GFPHNDII 159

Query: 116 LET-APLLSPTLDAVRN-------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           ++T    ++   D ++N       + + + L  V D  NIG + RS   F    I   K+
Sbjct: 160 MKTHYRYMNNYKDFIKNIKHLPNKNNIFICLHDVYDNMNIGNVCRSIFFFGGHTIFLKKK 219

Query: 168 YSPSES-------AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKP 219
              +E          +  S+ G+ E + +  I+N+ + +  M   GF     S   +   
Sbjct: 220 KKVNEKKNNVKIDTPILHSSVGSSEFLNFYHINNMANFMNHMKLNGFTIYSTSCHKNNTS 279

Query: 220 LEQEI--------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-------IIKALN 264
             + I        +N+KI +ILG E KGL+    E +    +++           I +LN
Sbjct: 280 CHKYINLNNIKIRENEKILIILGNESKGLKEDILENSDYCVYINNLSYNENTQFHIDSLN 339

Query: 265 VSNAAAVALYITQNHF 280
           V+N  ++ L    NHF
Sbjct: 340 VNNVCSIML----NHF 351


>gi|219684874|ref|ZP_03539816.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
 gi|219671819|gb|EED28874.1| tRNA/rRNA methyltransferase [Borrelia garinii PBr]
          Length = 218

 Score =  122 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIP 188
           R + L  VL+ +  P N  A +R+       D  I +KR   + +  +     G+ + I 
Sbjct: 31  RTNYLTFVLEDIFQPQNASATIRTGEILGLSDVHIISKRNKCTLNPDV---TLGSSQWIN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             R +N   AL ++ S G+  +  S D +   LE    N+K+A+  G E  GL  +  E 
Sbjct: 88  LNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAFEA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G  ++ N+S A A+ +Y       K
Sbjct: 148 ADLYLKIPMYGFTQSYNISVAVAIVMYSLSIRLRK 182


>gi|296200974|ref|XP_002747842.1| PREDICTED: RNA methyltransferase-like protein 1 [Callithrix
           jacchus]
          Length = 429

 Score =  122 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 101/318 (31%), Gaps = 63/318 (19%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  +     +++ S     KSR    +   + L G   ++ AL   +       +    L
Sbjct: 93  RYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRVEYL 152

Query: 79  ARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNS 132
             L  D         VK    +    +V      QG+  +   P    +  P      + 
Sbjct: 153 KELPVDKLKGVSLIKVKFEDIKDWSDLV----TPQGIMGIFAKPDHVKMTYPKTQLQHSL 208

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++   A   +P I  
Sbjct: 209 PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMSAHFQVPIINN 268

Query: 193 SNLTDALQKM------------------------HSWGFQT-----------------IG 211
                    +                           G+                    G
Sbjct: 269 LEWETVPNYLPPDTRIYVADNCGRYAQAQVSNKAGDHGWVCDQRALKSHRYEEEEDVETG 328

Query: 212 LSSD-----SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKA 262
            S D       +  + +      A+++G E  G+  ++ + A S       + +   + +
Sbjct: 329 ASQDWLPEVEVQSYDLDWTEAPAAVVVGGETHGVSLESLQLAESTGGKRLLIPVVPGVDS 388

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA++ L+  +   
Sbjct: 389 LNSAMAASILLFEGRRQL 406


>gi|219685293|ref|ZP_03540112.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
 gi|219673066|gb|EED30086.1| tRNA/rRNA methyltransferase [Borrelia garinii Far04]
          Length = 218

 Score =  122 bits (308), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 5/157 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEH 186
           + R + L  VL+ +  P N  A +R+       D  I +KR   + +  +     G+ + 
Sbjct: 29  SCRTNYLTFVLEDIFQPQNASATIRTGEILGLSDVHIISKRNKCTLNPDV---TLGSSQW 85

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I   R +N   AL ++ S G+  +  S D +   LE    N+K+A+  G E  GL  +  
Sbjct: 86  INLNRYNNTKFALDRLKSDGYSIVATSLDEQSINLEDFPINNKMAVFFGTELTGLSAEAF 145

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           E A     + M G  ++ N+S A A+ +Y       K
Sbjct: 146 EAADLYLKIPMHGFTQSYNISVAVAIVMYSLSIRLRK 182


>gi|332992179|gb|AEF02234.1| rRNA methylase [Alteromonas sp. SN2]
          Length = 271

 Score =  122 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 97/280 (34%), Gaps = 44/280 (15%)

Query: 29  DYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN------------PSRKIFQLLATKN 76
           D KK+     + ++  Q     + G H V   +              PS +   L  T +
Sbjct: 6   DVKKLH----QKKYRGQFGFYLVEGEHLVLELVKAVRANAYSNASSAPSAESITLYITDD 61

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------- 129
              +      L   F +  V  + + ++       QG+     PL S T  A        
Sbjct: 62  FEQK---ARALDSGFTLVNVTQKQMSQLSDT-KTPQGIIACV-PLPSSTAGATNTLEQVS 116

Query: 130 ----------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
                     ++ Q  + L  V DP N+G ILR+   F    ++ +       ++ + +S
Sbjct: 117 DKHSNQGLGHKDKQRYVYLHEVQDPGNLGTILRTLAWFDNFSLLLSPNSVDPFNSKVVRS 176

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
           + GA+ H+P     +L     +   + +  +   + +               + G E +G
Sbjct: 177 SMGAIFHVPIELDVSLDALQTRFSRFAYLDMAGEAVTAPSFSDFD-----CYLFGNEARG 231

Query: 240 LRPKTQETATSMAH-LHMPGIIKALNVSNAAAVALYITQN 278
           +         + A+ +   G I +LN+++A  + +Y    
Sbjct: 232 VPKAALSAFNAKAYTIAGSGKIDSLNLASAVNMCVYELSR 271


>gi|213855785|ref|ZP_03384025.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 179

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 1/111 (0%)

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKI 229
           S    +A +A+G+   +       + DA+  +   G Q +    SD      +       
Sbjct: 5   SRMRTMASAAAGSNSWVQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPT 64

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +++G E  G+  +  + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 65  CILMGQEKTGITQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 115


>gi|297518058|ref|ZP_06936444.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50]
          Length = 174

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIAL 231
              +A +A+G+   +       + DA+  +   G Q +    SD+     +        +
Sbjct: 2   MRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAVDFREIDYTRPTCI 61

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G E  G+  +    A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 62  LMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYEAQRQR 110


>gi|532360|gb|AAA21799.1| ORFD1 [Bacillus subtilis]
          Length = 143

 Score =  122 bits (306), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 13/144 (9%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKN---ALARLDWDANLPHPFPVKTVPPQTID 102
            ++ ++ G + V   L +  RK+++L   +N     A+   +        ++ VP + +D
Sbjct: 3   QQHDYVIGKNAVIETLKSD-RKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLD 61

Query: 103 KIVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAV 155
           ++V     HQG+  + A      LD +             ++LD + DPHN+G+I+R+A 
Sbjct: 62  QMV--TGQHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTAD 119

Query: 156 AFSCDGIITTKRYSPSESAVLAKS 179
           A    GI+  KR +   +  +AK+
Sbjct: 120 AVGAHGIVIPKRRAVGLTTTVAKA 143


>gi|301765370|ref|XP_002918107.1| PREDICTED: RNA methyltransferase-like protein 1-like [Ailuropoda
           melanoleuca]
 gi|281342377|gb|EFB17961.1| hypothetical protein PANDA_006496 [Ailuropoda melanoleuca]
          Length = 423

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 108/340 (31%), Gaps = 70/340 (20%)

Query: 4   ISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN 63
           +S  ++   +      Y K     R    + +  +      +   + L G   ++ AL  
Sbjct: 77  VSPSQTPCTWEESGLRYDKALPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKA 136

Query: 64  PSRKIFQLLATKNALARLDWDANL-PHPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP- 120
            +       +    +  L  D         VK    +    +V      QG+  +   P 
Sbjct: 137 GAVPKVFFFSRLEYIKELPIDKLKGASLIKVKFEDIKDWSDLV----TPQGIMGIFAKPD 192

Query: 121 ---LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              +  P         LL++ D++ DP N+G ILRSA    C  ++ TK    +    + 
Sbjct: 193 HVKMTYPETQLRHLLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVL 252

Query: 178 KSASGALEHIPYIRISNLTDA--------------------------------------L 199
           ++  GA   +P I   +                                          L
Sbjct: 253 RAGMGAHFQVPIINNLDWETLPNYLPSDTRVYVADNCGLYAQAQMSNKASDHGWVCERRL 312

Query: 200 QKMHSWGFQTIGLSSDSKKP-------------LEQEIKND-KIALILGAEGKGLRPKTQ 245
            K+H   ++      D ++P                    +   A+++G E  G+  ++ 
Sbjct: 313 SKLHK--YEEEEEEEDDREPGASKAWLPELEVQRYDSDWTEAPAAVVIGGETHGVSLESL 370

Query: 246 ETATS----MAHLH-MPGIIKALNVSNAAAVALYITQNHF 280
           E A S       +  MPG + +LN + AA++ L+  +   
Sbjct: 371 ELAESTGGKRLLIPVMPG-VDSLNSAMAASILLFEGKRQL 409


>gi|261415409|ref|YP_003249092.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371865|gb|ACX74610.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 218

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 114 LALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYS 169
           L           L +V   R     MVL+ + DPHNI A++R+A  F    + I  +  +
Sbjct: 10  LLARVTERRRELLTSVVNRRTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNA 69

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
            S +  + K   G+ + +           ++K+   G++    S+++   +     +  +
Sbjct: 70  YSVNKSILK---GSYKWMSLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPM 126

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           A  LG+E  G  P T   A     L   GI +++NVS A  V +
Sbjct: 127 AFYLGSEFHGNHPDTLAHADYEFKLPQYGITESMNVSVAGGVLM 170


>gi|83815691|ref|YP_445907.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|294507817|ref|YP_003571875.1| methyltransferase [Salinibacter ruber M8]
 gi|83757085|gb|ABC45198.1| SpoU rRNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|294344144|emb|CBH24922.1| methyltransferase [Salinibacter ruber M8]
          Length = 187

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 2/165 (1%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E        +  +    + +V+ +V   HN+G++ R++ A   + I  T      E   L
Sbjct: 8   EIERPAPEEIPTLPKHPVRLVVHNVRSIHNVGSMFRTSDAARIEHIHLTGFTGTPEHKDL 67

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILG 234
            K+A GA + + + +       L+ +   G+    L  +  +++P         IAL++G
Sbjct: 68  HKTALGAQDAVEWSQHDEPRPLLRDLKDAGYTIAALEQTDHTQRPDAAPADAFPIALVVG 127

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E +G+ P   +       +   G   +LNV  A  +A+Y     
Sbjct: 128 NEVRGIEPDVLDAVDLALEIPQYGAKISLNVGVAYGIAVYDLIRR 172


>gi|159479268|ref|XP_001697715.1| hypothetical protein CHLREDRAFT_105431 [Chlamydomonas reinhardtii]
 gi|158274083|gb|EDO99867.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 198

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 12/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++   V+  HNIG I+RSA AF    +        +        + G+  H+ +     L
Sbjct: 3   IITHSVSKRHNIGTIVRSATAFGVKEVCLVGSRQFNTFG-----SHGSDAHVAFRHFDTL 57

Query: 196 TDALQKMHS-WGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
              +Q +    G + +G+   +   P+++       A +LG EG+G+  +         +
Sbjct: 58  AKCVQHLKEVEGCRVLGVEICEGALPVQEHPFTGPTAFLLGNEGQGMTDRQMALCDGFVY 117

Query: 254 LHMPG-IIKALNVSNAAAVALYITQNHFA 281
           +   G    +LNV+ AA++ L+    HFA
Sbjct: 118 IPQHGAGTASLNVAVAASIVLH----HFA 142


>gi|256380914|ref|YP_003104574.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
 gi|255925217|gb|ACU40728.1| tRNA/rRNA methyltransferase (SpoU) [Actinosynnema mirum DSM 43827]
          Length = 235

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 16/234 (6%)

Query: 46  PENLFLYGVHTVSAALN-NPSRKIFQLLATKN----ALARLDWDANLPHPFPVKTVPPQT 100
              + L G H V  AL    +  + ++L T      ALAR      +     V+ V    
Sbjct: 2   AGEVLLEGFHAVKHALRFGGAGAVREVLLTDRDAVLALARSHAPDLVDVFAAVEPVTAAE 61

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           + +  G+ A   G+A   A   +      R + L++ LD+  +  N GA++R A      
Sbjct: 62  LVRRTGR-AHPTGVAGFAARPAAAVPGPDRTAPLVL-LDNPRNLGNFGAVVRVAAGLGAS 119

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G+++T          + + ++G    +P  R+ +      ++           +D + P+
Sbjct: 120 GVVSTGD-VDPWHPTVLRGSAGLHYALPVARVDDPAALEGEL-------FAFDADGE-PV 170

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++    D   L  G+E  GL  +T+  A  +  L M  ++ + N++ + A+ALY
Sbjct: 171 DRVRFPDGAVLAFGSERHGLSERTRARADRVVSLPMRPLVSSYNLTTSVAMALY 224


>gi|126314205|ref|XP_001370297.1| PREDICTED: similar to RNA methyltransferase like 1 [Monodelphis
           domestica]
          Length = 517

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 80/325 (24%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP--SRKIFQLLATKN 76
            Y +     R   K+ +  +      +   + L G   ++ AL      R +F       
Sbjct: 97  RYERALPGDRRLSKVMTIVKSRSFRDKQGKILLEGRRLIADALRAGAVPRTVF------- 149

Query: 77  ALARLDWDANLPHP-------FPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSP 124
             +RL++   LP           VK    +    +V      QG+  +   P    +  P
Sbjct: 150 -FSRLEYVKELPADKLKGVSLIKVKFDDIKEWSDLVAP----QGIMGIFAKPDHVKMKYP 204

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
                 +  LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA 
Sbjct: 205 ETQLEYSLPLLLICDNLRDPGNLGTILRSAAGAGCQKVLLTKGCVDAWEPKVLRAGMGAH 264

Query: 185 EHIPYIRISNLTDALQKM---------HSWGFQTIGLSSDSKK----------------- 218
             +P I                      + G  T  L+  + K                 
Sbjct: 265 FQVPIISNLEWETIPNYFPPDTRVHVADNCGLHTRALAQRAGKASDQGWVCDRRFQKHLK 324

Query: 219 ------------------------PLEQEIKNDKIALILGAEGKGLRPKTQETATS---- 250
                                   P +    +   A+++G E  G+  ++   A S    
Sbjct: 325 YEEVDDPEEGEVPADSWLPELQVQPYDAAWTDAPAAVVIGGETHGVSLESLHLAESTGGK 384

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI 275
              + +   + +LN + AA++ L+ 
Sbjct: 385 RLLIPVVPGVDSLNSAMAASILLFE 409


>gi|66819903|ref|XP_643609.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
 gi|60471754|gb|EAL69710.1| hypothetical protein DDB_G0275919 [Dictyostelium discoideum AX4]
          Length = 787

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 107/311 (34%), Gaps = 94/311 (30%)

Query: 54  VHTVSAALNNPSRKIFQLLATKN--ALARLDWDANLPH--------PFPVKTVPPQTIDK 103
           + +V +        + +L          +L+  A + H            +    +T+ K
Sbjct: 375 IRSVLSIFERRPEDLVKLYIDSKFYKDNKLELKALIKHFVDSSKTYKILNEEESEETLRK 434

Query: 104 IVGKEAVHQGLALETA--------PLLSPTLDAV-------------------------- 129
           + G    H G+   T          L    ++                            
Sbjct: 435 VSGT-IHHGGICAVTKKKYCMPTKELFDKEMEKANFLSNSPFTNKVHSFSSEFSKSKILN 493

Query: 130 ---------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS------PSESA 174
                     +  ++++LD + +P NIGAI+RSAV F  + +I    +          SA
Sbjct: 494 QIKFNSLGSGSKPVVLLLDGIENPQNIGAIIRSAVLFGVESVIFVNEFDKKTGSINPYSA 553

Query: 175 VLAKSASGALEHIPYIRI---SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---- 227
              +S+ GA+E+    ++    +  + L +    G++ +  +S+  K ++    N     
Sbjct: 554 ESYRSSRGAVEYCNISQLYLRRDAAEVLDEFVENGWEVVTTASN--KLIDDNADNGIVEQ 611

Query: 228 -------------------------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
                                     I L+LG+E KG+     + +T    +   G+I++
Sbjct: 612 FKPLKSLTKNISLYSDESNRVLGLKPIVLVLGSETKGISRTISKKSTVSISIPGTGLIES 671

Query: 263 LNVSNAAAVAL 273
           LNVS A+++ L
Sbjct: 672 LNVSQASSIIL 682


>gi|302328206|gb|ADL27407.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 205

 Score =  121 bits (305), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 4/158 (2%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAV 175
           E    L  ++   R     MVL+ + DPHNI A++R+A  F    + I  +  + S +  
Sbjct: 3   ERRRELLTSVVNRRTRHFCMVLEDLFDPHNISAVIRTAEVFGLQDVHIIEEDNAYSVNKS 62

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + K   G+ + +           ++K+   G++    S+++   +     +  +A  LG+
Sbjct: 63  ILK---GSYKWMSLYLYKKRMLCMEKLREKGYKIAVASTNTTNSVLDLDLSQPMAFYLGS 119

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           E  G  P T   A     L   GI +++NVS A  V +
Sbjct: 120 EFHGNHPDTLAHADYEFKLPQYGITESMNVSVAGGVLM 157


>gi|159491280|ref|XP_001703599.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270618|gb|EDO96457.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 148

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 13/152 (8%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A   +  L+VLD V DP N+G ++RSA+AF   G+          +    +++ GA+  +
Sbjct: 6   ATSRAVRLLVLDGVQDPGNLGTLVRSALAFGWHGLFLLPGCCDPLNDKAVRASRGAVLRL 65

Query: 188 PYI--RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           P    ++  L +A ++                        +  +AL+LG+EG+GL    +
Sbjct: 66  PVAAGQLRELQEAAEE---------LGLLLLSSSGSGSGCSGGVALVLGSEGQGLSGAVR 116

Query: 246 ETATSMAHLHM-PGIIKALNVSNAAAVALYIT 276
               S   + M PG +++LNV  A ++ ++  
Sbjct: 117 ALC-SPVAVPMTPGAMESLNVGVAGSLLMFAL 147


>gi|168056477|ref|XP_001780246.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668300|gb|EDQ54910.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 190

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 11/149 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +++ +V   HN+G + RSA AF    II   R   +        + GA  H+ +     
Sbjct: 4   FLLVHNVAKRHNLGTLARSATAFGVSEIILVGRKDFNAFG-----SHGATLHLQFRHFQT 58

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L  A++ +        G+  ++    + +       A +LG EG GL  K  E      +
Sbjct: 59  LPAAVKYLKDKNVSICGVEITEGAAGVHKYPFTGSTAFVLGNEGTGLSDKEMEICDFFVY 118

Query: 254 LHMPG-IIKALNVSNAAAVALYITQNHFA 281
           +   G    +LNV+ AA++ L+     FA
Sbjct: 119 IPQNGPGTASLNVTVAASIVLH----QFA 143


>gi|332262651|ref|XP_003280373.1| PREDICTED: RNA methyltransferase-like protein 1 [Nomascus
           leucogenys]
          Length = 420

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 108/321 (33%), Gaps = 69/321 (21%)

Query: 22  KLRRNHRDYKKMQSFNQ--KSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
           +  + +   +++ S     KSR    +   + L G   ++ AL   +      +A     
Sbjct: 93  RYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLITDALKAGA------VAKTFFF 146

Query: 79  ARLDWDANLP----HPFPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAV 129
           +RL++   LP        +  V  + I          QG+  +   P    +  P     
Sbjct: 147 SRLEYLKELPVNKLKGVSLIKVKFEDIKDWSDL-VTPQGIMGIFAKPDHVKMTYPKTQLQ 205

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +  LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P 
Sbjct: 206 HSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRVPI 265

Query: 190 IRISNLTDALQKM------------------------HSWGF----QTI----------- 210
           I           +                           G+    Q +           
Sbjct: 266 INNLEWETVPSYLPPDTRVYVADNCGFYAQAQMSNKASDHGWVCDQQVLKFHKYEEEEDV 325

Query: 211 --GLSSD-----SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGI 259
             G S D       +    +      A+++G E  G+  ++ + A S       + +   
Sbjct: 326 ETGASQDWLPDVEVQSYCSDWTAAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPG 385

Query: 260 IKALNVSNAAAVALYITQNHF 280
           + +LN + AA++ L+  +   
Sbjct: 386 VDSLNSAMAASILLFEGKRQL 406


>gi|68071813|ref|XP_677820.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498081|emb|CAH95522.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 300

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 113/284 (39%), Gaps = 51/284 (17%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKN--ALARLDWDA-------NLPHPFPV 93
            ++ +  ++YG+++V + L    RKI + +  KN     ++  +A              V
Sbjct: 17  QNKNDIDYIYGLNSVYSVLKKNERKIDKAIINKNIKRSKKIHKEAYDYILNTIKERNIQV 76

Query: 94  KTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-----NSQLLMVLDHVNDPHNIG 148
                  + ++VG    H  + +E    +      +      N+ + + L +V D  N+G
Sbjct: 77  VYKTKNEMCELVG-GFPHNDIIIELYRYMKNYRHFINSKKTTNNNIYICLHNVYDNMNVG 135

Query: 149 AILRSAVAFSCDGIITT-------KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
            I RS + F  + I           +     +  +  S+ GA E++ +  ++N+ + +  
Sbjct: 136 NICRSVLFFGGESIFLKRKRKKGEHKNYIKINTPILHSSVGASEYLNFFHVNNMENFISS 195

Query: 202 MHSWGFQTIGLSS-DSKKPLEQEI--------KNDKIALILGAEGKGLRPKTQETATSMA 252
           +   GF  +  SS  +   +   +        KN+K+ +ILG E KGL     + +    
Sbjct: 196 LKEKGFTILSTSSPKNNTQMTNFVELKNVKINKNEKVMIILGNESKGLNEDIIKNSDICI 255

Query: 253 HLH--------MPG--------IIKALNVSNAAAVALYITQNHF 280
           +++         P         I+ +LNV+N  ++ L+    HF
Sbjct: 256 YINNLFDEQNIQPNLKNTNDNIIVNSLNVNNVCSIILH----HF 295


>gi|163754906|ref|ZP_02162027.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
 gi|161324973|gb|EDP96301.1| RNA methylase, SpoU family protein [Kordia algicida OT-1]
          Length = 171

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   + +V D V++  NIG++ R   AF  + II      P     + K++    + +
Sbjct: 12  EKRIFPITLVSDQVSNAPNIGSLFRICDAFGVEKIIFCGDNIPVFGRRMTKTSRATEKVV 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKT 244
           P+   +++   + K+   G+  I L  +++ + +     +  +KIAL++G E  G+ P+T
Sbjct: 72  PFEITTDIHAVVSKLKDHGYTIISLEITENSQSIHTIDFSKYEKIALVIGDENFGVNPET 131

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  + H+ M G   ++NV  A  + LY     
Sbjct: 132 IYESDVVMHIDMFGQNSSMNVVQATNIVLYEITRQ 166


>gi|126644106|ref|XP_001388189.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum
           Iowa II]
 gi|51951322|gb|AAU15130.1| tRNA/rRNA methyltransferase-like protein [Cryptosporidium parvum]
 gi|126117262|gb|EAZ51362.1| tRNA/rRNA methyltransferase-like protein, putative [Cryptosporidium
           parvum Iowa II]
          Length = 214

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  +VL +++   N G +LRSA  F    ++        E  ++     G L H+   +
Sbjct: 14  PEFYLVLSNISKRQNFGTLLRSACGFGVSEVLV-----VGEKKLMTFGNKGTLPHLSLTQ 68

Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             N+   +  +       +G+  SD  +P+         A +LG EG GL  K  +    
Sbjct: 69  YENIDQVVDIIKEKEMDLVGIEISDESRPIYPHPFKRSTAFLLGNEGTGLSQKYIKLCDY 128

Query: 251 MAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
           + H+ + G    +LNV+ A ++  +    HFA
Sbjct: 129 LIHIPLYGNGTASLNVAIAGSIVFH----HFA 156


>gi|67596101|ref|XP_666055.1| OBP33pep like protein [Cryptosporidium hominis TU502]
 gi|54656965|gb|EAL35825.1| OBP33pep like protein [Cryptosporidium hominis]
          Length = 213

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 11/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  +VL +++   N G +LRSA  F    ++        E  ++     G L H+   +
Sbjct: 14  PEFYLVLSNISKRQNFGTLLRSACGFGVSEVLV-----VGEKKLMTFGNKGTLPHLSLTQ 68

Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             N+   +  +       +G+  SD  +P+         A +LG EG GL  K  +    
Sbjct: 69  YENIDQVVDIIKEKEMDLVGIEISDESRPIYPHPFKRSTAFLLGNEGTGLSQKYIKLCDY 128

Query: 251 MAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
           + H+ + G    +LNV+ A ++  +    HFA
Sbjct: 129 LIHIPLYGNGTASLNVAIAGSIVFH----HFA 156


>gi|300789967|ref|YP_003770258.1| rRNA methylase [Amycolatopsis mediterranei U32]
 gi|299799481|gb|ADJ49856.1| rRNA methylase [Amycolatopsis mediterranei U32]
          Length = 249

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 23/241 (9%)

Query: 40  SRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR-----LDWDANLPHPFPVK 94
            R  S+P+ + L G H +  AL      +  ++ T  A  R     L  D         +
Sbjct: 10  ERLRSRPDVVVLEGFHAIKHALRFGG-AVDAVVTTDTAALRKLAQELAPDVEDAITAHAQ 68

Query: 95  TVPPQTIDKIVGKEAVHQ--GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           TV    I +++G+  VHQ    AL   P    +  +   +   ++L++  +  NIGA++R
Sbjct: 69  TVSAAEIAQLLGR--VHQTEVAALARRPAWPESARSADRASPAVLLENPRNLGNIGAVIR 126

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
            A       + +T          + + ++G    +P  R       L  +H        L
Sbjct: 127 VAAGLGLSSVYSTG-TVDPWHPTVIRGSAGLHYALPVRR-------LAGIHEAEGPIYSL 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN----VSNA 268
                   E  I  D + L  G+E  G+ P+ +  +  +  + M   + + N    V+ A
Sbjct: 179 DPAGIDLREAVIPQDAL-LAFGSERSGISPELRRHSDVLLSIPMRAEVSSYNLTTSVAMA 237

Query: 269 A 269
           A
Sbjct: 238 A 238


>gi|313207195|ref|YP_004046372.1| tRNA/rRNA methyltransferase (spou) [Riemerella anatipestifer DSM
           15868]
 gi|312446511|gb|ADQ82866.1| tRNA/rRNA methyltransferase (SpoU) [Riemerella anatipestifer DSM
           15868]
 gi|315022402|gb|EFT35429.1| 23S rRNA methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325335365|gb|ADZ11639.1| rRNA methylase [Riemerella anatipestifer RA-GD]
          Length = 161

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 65/151 (43%), Gaps = 2/151 (1%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             +++  N ++ ++L+H+  P NIG ILR+A A     ++         S  + ++   A
Sbjct: 7   EIINSKHNKEISLILEHLQSPENIGLILRTAEAMGVQKVVILSDNFRQLSPRIKRTTRSA 66

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++  I +++  +A+            L  ++          +    ++ G E  G+  
Sbjct: 67  ENNLNIIFVNSWEEAINHF-EKNTHFYALEKTNKSVDYTTFEYHFPCVIVCGNEKDGVSN 125

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           K  E  T+  H++M G   +LNV+ A  + L
Sbjct: 126 KALEKCTNHLHINMYGKNTSLNVAIATGILL 156


>gi|302421720|ref|XP_003008690.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
 gi|261351836|gb|EEY14264.1| rRNA methyltransferase [Verticillium albo-atrum VaMs.102]
          Length = 610

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 53/222 (23%)

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVR---------------------------------- 130
           V +   H GL LE +PL    L ++                                   
Sbjct: 357 VRRGRPHNGLVLEVSPLPQLPLVSLGPVTEDGYTVEIAHQMREDAEINGTEPFQAWDSRA 416

Query: 131 -NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +   +++L  V DP N+GA+LR+A       ++ TK+ S   +  + K+A+GA E +  
Sbjct: 417 GHKPFVLLLHEVMDPGNLGAMLRTARFLGAAAVVITKQTSSPITPTVVKAAAGAAEELAI 476

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPL--------------EQEIKNDKIALILGA 235
             +++    L+     G+++    + +                  E  ++     L+LG 
Sbjct: 477 FSVADPVAFLEGSQKAGWESYVAVAPASGSSNSARQQVTADELAEEDPLREKPCILVLGN 536

Query: 236 EGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVAL 273
           EG+GL  K    A+    +         + +LNVS AAA+  
Sbjct: 537 EGEGLSRKIMSRASRQVTIQRQPAGRSSVDSLNVSVAAALLC 578


>gi|158520421|ref|YP_001528291.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
 gi|158509247|gb|ABW66214.1| methyltransferase GidB [Desulfococcus oleovorans Hxd3]
          Length = 490

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 108/278 (38%), Gaps = 28/278 (10%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           S+++ +     +   +     N+  +K+++      R   +     + GV  V+ AL   
Sbjct: 228 SRRQQKAAAMNRHRVHVIESENNARFKELKKLLG-GRGVKKQNLALVAGVKPVTEALAAF 286

Query: 65  SRKIFQLLAT-------KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
             +    +         +NA + L W+   P  F       + +D + G  A    L  E
Sbjct: 287 PDQCRAWITRQDQTPPPENAPSHLAWEQLAPALF-------EALD-VFGTRAP--LLLFE 336

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            + +     D   +    ++L    DP N GA +RSAVAF    I+     +        
Sbjct: 337 PSSMGVWRPDEGFSPGCTLLLP-FQDPENAGAAIRSAVAFGAAKIVLLSECAHPFHPKTI 395

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++++GA+ H P     +L D  + +       + LS +   P+          L+ G EG
Sbjct: 396 RASAGAVLHAPLFEGPSLKDLPEDL-----PIVPLSMEGA-PITGFSFPAAFGLLAGIEG 449

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            GL    +  A     + + G +++LN + A AVALY 
Sbjct: 450 PGLPDAWRSRA---VSIPVTGAVESLNAATAIAVALYA 484


>gi|189241058|ref|XP_968858.2| PREDICTED: similar to RNA methyltransferase like 1 [Tribolium
           castaneum]
 gi|270014173|gb|EFA10621.1| hypothetical protein TcasGA2_TC016258 [Tribolium castaneum]
          Length = 403

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 91/285 (31%), Gaps = 24/285 (8%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           Y K++ N R    +    +  +   + + + L G   +  AL +     + L + K+ + 
Sbjct: 118 YTKMKDNDRRISSILVDVKSKKEQDKKDLILLEGKRLIRDALQSGCALKYILFSRKDEIE 177

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            L           +  +P + +            + L   P      + V    + ++ D
Sbjct: 178 YLKPFLP-KVGAQLYKMPYKEMQMWSDLTTNPGIMGLFKTP-PVEAFEPVNPLPITVICD 235

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--RISNLTD 197
           ++ +P N+G ILR   A  C  +I TK         + + A GA   +         + D
Sbjct: 236 NIREPGNLGTILRICAAVGCARVILTKGCVNLWDTKVLRGAVGAHFKLKIEKKEWDEIGD 295

Query: 198 ALQ---KMHSWGFQTIGLSSDSKK-----------PLEQEIKNDK--IALILGAEGKGLR 241
            +    K      + +                   P           + +++G E  G+ 
Sbjct: 296 EVDPDAKFFIADNRIVSSEDTGGDLGELLGKIPIVPYFGVDFRTSNHLVVVVGGETLGVS 355

Query: 242 ----PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                    +  +  ++ +   + +LNV  A  +  +  +    +
Sbjct: 356 KNSYELALRSNGARLNIPLSNDVDSLNVGAALGIIAFEIKKQLLQ 400


>gi|262197612|ref|YP_003268821.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
 gi|262080959|gb|ACY16928.1| tRNA/rRNA methyltransferase (SpoU) [Haliangium ochraceum DSM 14365]
          Length = 231

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E A  +   L A R S L + +++++DPHN  A++RS  A     +   +          
Sbjct: 32  ERAARIDSVLSA-RLSGLTVAIENLHDPHNGAAVVRSVEAVGLTSLHVAEPI--ERFQFS 88

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
              A G+ + I  +R    T   + +   GF+      D++  ++    +   A++ G E
Sbjct: 89  PAVAIGSEKWIRVLRHQGFTACARILRGAGFRMYAACPDAEMSMDDIDVSQPSAVVFGNE 148

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
            +GL  +  +   +   + M G  ++LN+S + AV+++ +     A
Sbjct: 149 HEGLSRRAIDACDAKVAIPMHGFTQSLNLSVSVAVSIFQLAARRRA 194


>gi|291514444|emb|CBK63654.1| rRNA methylases [Alistipes shahii WAL 8301]
          Length = 178

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +    A+    + +VLD+V    N+GA  R+  AF+ + I+     +   S  + K+A G
Sbjct: 14  AEEFAAMEKMPVTVVLDNVRSAQNVGAFFRTGDAFAVERIVLCGITATPPSRDIHKTALG 73

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKIALILGAEGKG 239
           A   +P+   ++    + ++ + G+    +   +    L+  +     K AL+ G E  G
Sbjct: 74  AEMTVPWSYCASTVGCIAQLRAEGYAVYAVEQVEGAVMLDAFRAAPGVKYALVFGNEVDG 133

Query: 240 LRPKTQETATSMAHLHMPGI 259
           +  +  +       +   G 
Sbjct: 134 VGQEAVDRCDGAVEIPQAGT 153


>gi|297699541|ref|XP_002826840.1| PREDICTED: RNA methyltransferase-like protein 1-like [Pongo abelii]
          Length = 420

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 100/318 (31%), Gaps = 60/318 (18%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL 78
            Y K     R    + +  +      +   + L G   ++ AL   +       +    L
Sbjct: 93  RYDKAYSGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKMFFFSRLEYL 152

Query: 79  ARLDWDANLP-HPFPVKTVPPQTIDKIVGKEAVHQGLA-----LETAPLLSPTLDAVRNS 132
             L  D         VK    +    +V      QG+       +   +  P      + 
Sbjct: 153 KELPVDKLKGVSLIKVKFEDIKDWSDLV----TPQGIMGIYARXDHVKMTYPKTQLQHSL 208

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            LL++ D++ DP N+G ILRSA    C  ++ TK    +    + ++  GA   +P I  
Sbjct: 209 PLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIINN 268

Query: 193 SNLTDALQKM------------------------HSWGF----QTI-------------G 211
                    +                           G+    + +             G
Sbjct: 269 LEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVLKFHKYEEEEDVETG 328

Query: 212 LSSD-----SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKA 262
            S D       +  + +      A+++G E  G+  ++ + A S       + +   + +
Sbjct: 329 ASQDWLPDVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDS 388

Query: 263 LNVSNAAAVALYITQNHF 280
           LN + AA++ L+  +   
Sbjct: 389 LNSAMAASILLFEGKRQL 406


>gi|162448639|ref|YP_001611006.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
           ce 56']
 gi|161159221|emb|CAN90526.1| tRNA (guanosine-2'-O-)-methyltransferase [Sorangium cellulosum 'So
           ce 56']
          Length = 508

 Score =  119 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 13/170 (7%)

Query: 115 ALETAPLLSPTLDAVRNSQL-----------LMVLDHVNDPHNIGAILRSAVAFSCDGII 163
             + A +L   +   R ++L            + +D  +DPHN  A+LRS  AF    + 
Sbjct: 27  VADVARILEEFVTNERRARLRGVIAARLDAVTVAMDAPHDPHNGAAVLRSCDAFGLQRLH 86

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +R    +  V    + G+   +     ++   A+ ++ + G + +    + +      
Sbjct: 87  IIER--AEQFLVSNTVSRGSERWVDVRTHASTEAAVAELRASGHELVATHPEGELTPRDL 144

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               ++AL+LG E  G+RP           + M G  ++LNVS  AA+ L
Sbjct: 145 SSIPRLALVLGNERDGIRPDLAAACARAVRVPMRGFAESLNVSVTAAILL 194


>gi|224102553|ref|XP_002312722.1| predicted protein [Populus trichocarpa]
 gi|118483281|gb|ABK93543.1| unknown [Populus trichocarpa]
 gi|222852542|gb|EEE90089.1| predicted protein [Populus trichocarpa]
          Length = 216

 Score =  119 bits (299), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 11/148 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ ++   HN+G + RSA AF    +I   R   +     +  + G+  H+P+    +L
Sbjct: 7   VVVHNIAKRHNVGTLARSATAFGVKELILVGRRDFN-----SFGSHGSTSHLPFRHFHSL 61

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +DA   +        G+  +DS  P+ +       A +LG EG GL  K  E      ++
Sbjct: 62  SDARNFLKEKDCDICGVEITDSAFPVNEHPFKRSTAFLLGNEGTGLSTKECEICDFFVYI 121

Query: 255 HMPG-IIKALNVSNAAAVALYITQNHFA 281
              G    +LNV+ AA++ L+    HF 
Sbjct: 122 PQYGCGTASLNVTVAASIVLH----HFG 145


>gi|296269772|ref|YP_003652404.1| tRNA/rRNA methyltransferase SpoU [Thermobispora bispora DSM 43833]
 gi|296092559|gb|ADG88511.1| tRNA/rRNA methyltransferase (SpoU) [Thermobispora bispora DSM
           43833]
          Length = 184

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +++L ++L+ V  P N+G++ R+A AF    I      +P       K+A G    + + 
Sbjct: 27  HNRLGLILESVTGPFNVGSVFRTAAAFGVAAIRLAGNATPPTHPKAQKTALGTDRLVEWH 86

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +T A+  M   G++ + +  +    P+ +   +  + L+LGAE  G+ P   E A 
Sbjct: 87  APVPVTQAIAAMREDGYRIVAVEITGDAVPIYEADLDGDVCLLLGAEEHGVSPAALEAAD 146

Query: 250 SMAHLHMPGI 259
           S+ ++   G 
Sbjct: 147 SVVYIPQVGR 156


>gi|149923142|ref|ZP_01911556.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
 gi|149815980|gb|EDM75495.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
          Length = 213

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 18/211 (8%)

Query: 79  ARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL---ALETAPLLSPTLDAVR--NSQ 133
            RL   A+    FPV           +G    H G     +E A L     D  R     
Sbjct: 5   QRLCTAADCGLRFPVAEGSE------LGSSCPHCGAPTRFVEAAYLSHEIRDTRRPSGPP 58

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +  +LD+V    N+G++ R+A       +         E   +AK++ GA   + +   +
Sbjct: 59  VEALLDNVRSLRNVGSMFRTADGAGVKAMHLCGFTPTPEHPKMAKTSLGAEASVAWSHHA 118

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-------NDKIALILGAEGKGLRPKTQE 246
           +   A   +   G +   L    +     ++        +  I L+LG E  G+ P+   
Sbjct: 119 DGAAAAAALVEQGRRLWALEGGPRAEDLFDLARVSGGPSDPAIVLVLGHEVSGVDPRILA 178

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A + M GI  +LNVS A AVA Y+ +
Sbjct: 179 HCERVARIPMAGIKGSLNVSVAFAVAAYLLR 209


>gi|1717813|sp|P52393|TSNR_STRLU RecName: Full=rRNA (adenosine-2'-O-)-methyltransferase; AltName:
           Full=23S rRNA [AM1067] 2'-O-methyltransferase; Short=23S
           rRNA methylase; AltName: Full=Thiostrepton-resistance
           methylase
 gi|763508|gb|AAA99931.1| rRNA methyltransferase [Streptomyces laurentii]
          Length = 270

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 3/197 (1%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
           A       V+ +     +++   E   +   +   P      D    S  +++LD V   
Sbjct: 68  ACEKRGIRVRLLSAAVANQVFKTEKKPKVFGIAKVPPAGRFADLESLSGDVVLLDGVKIV 127

Query: 145 HNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
            NIGAI+R+  A    GI+             L +++ G +  +P +  +   +AL    
Sbjct: 128 GNIGAIVRTRSALGAAGIVLVDSGLGTIADRRLIRASRGYVFSLPIVLATR-DEALAFFR 186

Query: 204 SWGFQTIGLSSDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G + +   +D K  + +    ++++ L+ G+E  G   +    AT    + M    ++
Sbjct: 187 DGGMRPVVFEADGKLSIGELDGIDERLVLVFGSEKTGPSGEFAGVATESVSIPMNPAAES 246

Query: 263 LNVSNAAAVALYITQNH 279
           LNVS +A +AL+     
Sbjct: 247 LNVSVSAGIALHRRARR 263


>gi|163788241|ref|ZP_02182687.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
 gi|159876561|gb|EDP70619.1| RNA methyltransferase, TrmH family protein [Flavobacteriales
           bacterium ALC-1]
          Length = 167

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 4/155 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   + +V D++++  NIG++ R A AF  + +I   +   S    + K++    +++ +
Sbjct: 13  QKHPITLVCDNISNAPNIGSLFRIADAFGIEELIFCGK-DVSLGKRMTKTSRSTEKYVTH 71

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQE 246
               N+ D + ++ +     I L  + + + L Q   N    IA+ILG E  G+      
Sbjct: 72  KIEENIKDVIARLKTKNHFLIALEITGNSQDLSQFTLNTKQPIAVILGDENFGVSDDIIN 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              ++ H++M G   ++NV  A ++ LY       
Sbjct: 132 LCDAVIHINMYGNNSSMNVVQATSITLYELTKQLN 166


>gi|255626589|gb|ACU13639.1| unknown [Glycine max]
          Length = 218

 Score =  118 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 11/149 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +V+ ++   HN+G + RSA AF    +I   R   +        + G+  H+ +    +
Sbjct: 6   FVVVHNIAKRHNVGTLARSATAFGVSELILVGRRDFNCFG-----SHGSSSHLRFRHFHS 60

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L DA + +    F   G+   +   P+ Q       A +LG EG GL PK  E      +
Sbjct: 61  LQDARKFLKDKDFDICGVEITTDSLPVNQHPFTKSTAFLLGNEGTGLSPKEIEICGFFVY 120

Query: 254 LHMP-GIIKALNVSNAAAVALYITQNHFA 281
           +    G   +LNV+ AA++ L+    HF 
Sbjct: 121 IPQYGGGTASLNVTVAASIVLH----HFG 145


>gi|303234407|ref|ZP_07321046.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
 gi|302494523|gb|EFL54290.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
          Length = 234

 Score =  118 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 84/218 (38%), Gaps = 10/218 (4%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             + N +  + ++L +++          L       T+  + I+KI  K+       +  
Sbjct: 24  ELIENKADIVEEVLISEDFNDTEKLINILKGKKIPYTISSKQINKISLKDKE---YVIGV 80

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                       +    ++LD +++  N+G I+RS +AF    +          +  + +
Sbjct: 81  FRKEKSNFQEKNH----IILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKVVR 136

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ GA   +   +  NL D  +   +    +  L  +S   L     ++  +L  G EG 
Sbjct: 137 ASMGAFFKLNIQKFDNLEDYKKNFPNNKIYSFLLD-ESSNELRDVKFDEPFSLAFGNEGA 195

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL  +      +   ++    + +LN+  A ++A+Y +
Sbjct: 196 GLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYES 231


>gi|224534903|ref|ZP_03675472.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
 gi|224513843|gb|EEF84168.1| tRNA/rRNA methyltransferase [Borrelia spielmanii A14S]
          Length = 218

 Score =  118 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 5/147 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIP 188
           R + L  VL+ +  PHN  A +R+        +   ++ +  + +  +     G+ + I 
Sbjct: 31  RTNYLTFVLEDIFQPHNASATIRTGEILGLSDVHIIEKNNKCTLNPDI---TLGSSQWIN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  N   A+ ++ S G+  +  S +     LE    N+K+A+  G E  GL  +    
Sbjct: 88  LNKYKNTKLAIDRLKSNGYIIVATSLNEQSVNLENFPINNKMAVFFGTELTGLSAEVLGA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A     + M G  ++ N+S A A+ +Y
Sbjct: 148 ADLCVKIPMYGFTQSYNISVAVAIVIY 174


>gi|254423600|ref|ZP_05037318.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196191089|gb|EDX86053.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 213

 Score =  118 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPS-------ESA 174
           +  +   R   L+ V+++ ND  NIG I+R+  A   +   I   + +         E  
Sbjct: 15  ADQIKEYRCKNLIAVIENPNDIKNIGTIIRNVNALGVEKAYIVDPKKALPDDWQEMREKR 74

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK----KPLEQEIKN--DK 228
            L+K++  A++     R  +    +  +    F +I  S   K      L++       K
Sbjct: 75  ALSKTSVSAIKWSFVKRFDSTAACIDHLEQNRFVSIVTSPHLKGRKNAVLDEADYTIYTK 134

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +A+  G E  G+     E +     + M G+I++LN+   + + LY      
Sbjct: 135 LAVWFGNESMGISDLAVEHSDLCVSIPMFGMIESLNLGTTSGIVLYEITKQR 186


>gi|115649674|ref|XP_782724.2| PREDICTED: similar to RNA methyltransferase like 1 variant
           [Strongylocentrotus purpuratus]
 gi|115931637|ref|XP_001192402.1| PREDICTED: similar to RNA methyltransferase like 1 variant
           [Strongylocentrotus purpuratus]
          Length = 449

 Score =  118 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 98/333 (29%), Gaps = 62/333 (18%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
               + I       Y K   + +   +     +  ++  Q   + L G   ++ AL + +
Sbjct: 114 SDDKDDIKGQDVPRYTKAGPDDKRLGRATMLAKSRKYREQSGKIILEGRRLITDALESGA 173

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAPLLS 123
           R      +  + +  L    +  +   V          +    +  QG+    +     +
Sbjct: 174 RADTIFFSQVSNIEGLPLAGSRVNLVKVAYKDIS----LWSDVSTPQGIVGVFQRPKHEN 229

Query: 124 PTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAV------------------------AF 157
             LD      L   ++ D++ DP N+G ILRSA                           
Sbjct: 230 LNLDQTSTDHLPVSLICDNIRDPGNLGTILRSAAAAACQKILLTKGCVDVWEPKVLRSGA 289

Query: 158 SCD----------------------GIITTKRYSPSESAVLAKSASGALEHI-PYIRIS- 193
                                     +               +S+ GA E+   Y +   
Sbjct: 290 GAHFRVPIISNIPWNSLPNYLSPNRSVHIADCNYVHNDNSQTQSSHGASENQSEYAQNEY 349

Query: 194 NLTDALQKMHSWGF-QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS- 250
           +  D +   HS    +T   +     P           AL++G E +GL  + +E  T  
Sbjct: 350 DNDDDISADHSKVMDETNAATDVRTVPYFSVNWTQGDYALVIGGETEGLSREAKELCTET 409

Query: 251 ---MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 + M   I +LN + A +V L+  +   
Sbjct: 410 GGRRIFIPMSMGIDSLNAAMATSVILFEAKRQL 442


>gi|86142668|ref|ZP_01061107.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
 gi|85830700|gb|EAQ49158.1| putative tRNA/rRNA methyltransferase [Leeuwenhoekiella blandensis
           MED217]
          Length = 175

 Score =  118 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 3/153 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                ++V D +N P N G++ R A A     I         ES  L ++A  + + +PY
Sbjct: 18  ETFPFVLVCDGINSPANAGSLFRLADALGIAHIYFCNTTIQFESTRLKRTARSSEKLVPY 77

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLE--QEIKNDKIALILGAEGKGLRPKTQE 246
              +++   L  +    +  IGL    + KPL    E    KIAL+LG E  G+      
Sbjct: 78  SPDADVITTLNGLKEKDYHLIGLELTTTSKPLASLNEYAFKKIALVLGHERYGICEDVLN 137

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + ++ M G   ++NVS AAA+A Y   N+
Sbjct: 138 ILDHITYIPMRGKNSSMNVSQAAAIAAYQLINN 170


>gi|332520270|ref|ZP_08396732.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043623|gb|EGI79818.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 166

 Score =  118 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 4/154 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   + ++ ++V +  NIG++ R+A AF  + II      P     + K++    + I Y
Sbjct: 13  QQFSITIICENVTNAPNIGSLFRTADAFGVEKIIFCGSKIP-LGRKMTKTSRTTEKFIKY 71

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQE 246
                + + + ++    +  + L  +D+ KP+          IA+++G E  G+     +
Sbjct: 72  QERETVEEVIIELKKSNYSILALEITDNSKPIHTFNVPTKKPIAIVIGDENFGISNTALK 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              ++ H+ M G   ++NV  A  VALY      
Sbjct: 132 QTDAIIHIDMFGQNSSMNVVQATTVALYEITKQL 165


>gi|332299114|ref|YP_004441036.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332182217|gb|AEE17905.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 273

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 83/214 (38%), Gaps = 20/214 (9%)

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH--QGLALETAP 120
           + + ++ +LLA      R   +    H   V    P   D ++        Q +  E   
Sbjct: 67  SAAGELERLLAADPFDERRVCNCARNHLLAVIGTFPAEWDLVIAPHRTEAAQSVCAERDF 126

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
                        + +  + +  P N+G+I R+A A   + ++ +   +    +   +S 
Sbjct: 127 Y----------RGVTVYAEDIRSPFNLGSIFRTAEAMGAERVLLSPGCADPAHSRALRSG 176

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
            G +E +P+ R+    +AL      G     L +    PL++     +  +++G+E  G+
Sbjct: 177 MGCIETMPWERVP--LEALP----AGVPVFVLET-GGTPLDEFAFPREGIVVIGSEELGV 229

Query: 241 RPKTQETATS-MAHLHMPGIIKALNVSNAAAVAL 273
            P+  +  T     + M G+  +LNV  A  + +
Sbjct: 230 SPEALKRGTYGRVSIPMKGLKASLNVGVAFGILM 263


>gi|218288919|ref|ZP_03493170.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241008|gb|EED08185.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 467

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 83/213 (38%), Gaps = 14/213 (6%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLL-ATKNALARLDWDAN 86
           R + ++++   + R         + G   V+  LN+P R    L     +      W   
Sbjct: 13  RAWARLKTRRGRER----TGLFLVEGERLVAELLNSPLRLEALLWNVASDEPPEALWQHP 68

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
                    + PQ    +   E     +A+ + P   P     ++   ++VLD + DP N
Sbjct: 69  KADGRR-YELSPQAFAAVADTETPQGLMAVASIPQTEP-----QHGDRVLVLDAIQDPGN 122

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW- 205
           +G ++RSA AF    I+     +   +  + +++ G L  +      +    L+      
Sbjct: 123 VGTLVRSAEAFGFGEIVFGTGTADPYAPKVVRASMGGLFRVN-AIAGDAEAYLRAWRDRH 181

Query: 206 -GFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
                +  ++D+++  ++     ++A+++G EG
Sbjct: 182 PDGLVVATAADARERCDEAPMAGEVAMVIGNEG 214


>gi|323451205|gb|EGB07083.1| hypothetical protein AURANDRAFT_14487 [Aureococcus anophagefferens]
          Length = 164

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L +  +  ++P N  A LR+  AF    +   K            +A GA + +  
Sbjct: 20  RTAHLRVAFERPSNPANAWACLRTIDAFGVQDVDVVKDT----LEARMHAAMGAQKWLTL 75

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKN-DKIALILGAEGKGLRPKTQET 247
                  D +  +H+ G++          +P+       +  AL+ G E  G+    +  
Sbjct: 76  REHDAPGDLVDALHAAGYKVAATDLGPGSRPIGDVDWAAEPYALVFGNEETGISEDLRAR 135

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVAL 273
           A    HL M G+ ++LN+S +    L
Sbjct: 136 ADVRVHLPMRGLAESLNLSVSVGACL 161


>gi|307069598|ref|YP_003878075.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
           Zinderia insecticola CARI]
 gi|306482858|gb|ADM89729.1| putative RNA methyltransferase, TrmH family, group 3 [Candidatus
           Zinderia insecticola CARI]
          Length = 239

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 63/128 (49%)

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           G+ +R++ A + D II +K+     + ++ K++ GA    PYI++ ++   ++ +    F
Sbjct: 107 GSCIRTSNALNIDLIILSKKCINKNNKIILKTSLGANLITPYIKVKSIKKIIKYLKKKNF 166

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           + IG    SK  L        I LI+G+E  G+    ++    +  + M G I  LNVS 
Sbjct: 167 KIIGTWEKSKLNLFNFKFPKLIVLIMGSEKNGISKTIKKMCDFIISIPMLGKINNLNVSV 226

Query: 268 AAAVALYI 275
           A  + LY 
Sbjct: 227 ATGIFLYE 234


>gi|325193446|emb|CCA27771.1| rRNA methyltransferase putative [Albugo laibachii Nc14]
          Length = 220

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 88/246 (35%), Gaps = 61/246 (24%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA----------NLPHPFPVKTVPPQT 100
           LYG H+V  AL    R ++ L   + +  + +  A             H   ++ +   T
Sbjct: 14  LYGYHSVLQALEVVHRDVYALYIKEESDRKQEGKAKQFTNKILHLAKAHNIAIRPLDKWT 73

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
           ++KI   +  HQG+ L+ +PL  P  + V                               
Sbjct: 74  LNKI-SNDKPHQGVILDASPLQIPFSEPV------------------------------- 101

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIP----YIRISNLTDALQKMHSWGFQTIGLS-SD 215
                       +  ++++++GALE +       +   L + L    +  ++T+G S S 
Sbjct: 102 ---------APRNDEVSRASAGALEILAAANMLSQTKCLNEFLALSSALSWRTVGASCSK 152

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----IKALNVSNAAA 270
              P+          L++G E +GLR    +    +  +          + +LNVS A+ 
Sbjct: 153 HATPITGLSSKCPTILVMGNEQRGLRKNVIKCCEQLVCIPGNSKQEVTNVDSLNVSVASG 212

Query: 271 VALYIT 276
           + LY  
Sbjct: 213 ILLYEL 218


>gi|323451450|gb|EGB07327.1| hypothetical protein AURANDRAFT_60146 [Aureococcus anophagefferens]
          Length = 270

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 25/279 (8%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
            + +   ++     D+ K+     + +   Q   +FL G   V  AL   +     L+A 
Sbjct: 2   ARSAAPRRIDSTKNDFVKLCKTLHRRKGREQTNLVFLEGQRLVGDALAAGAAPRTVLVAD 61

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
                 L  D       P+K V            +  QG     A +  P +    +   
Sbjct: 62  GVDADGLPGDVVRA---PLKVV------AACCDTSTPQG---VVAVVEKPVVAVPPSPTF 109

Query: 135 LMVLDHVNDPHNIGAILRS-AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI--R 191
           ++ LD V+DP N+GA++R+ A A      +     +   S    ++A GA   +P +  R
Sbjct: 110 VLALDGVSDPGNVGALIRTAAAAGCDAVAVVGAACADPWSPKSLRAAMGATFRVPVVEFR 169

Query: 192 ISNLTDALQKMH---SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                 A  ++        +   L+  ++        +    + +GAE  G+  +  E  
Sbjct: 170 DDGWAGAAPRLRGDWDLSVRAADLAPGAEAYDAAPWADGGACVAVGAEV-GVSRELAELL 228

Query: 249 T------SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  S  ++ M   +++LN + A +  L   +   A
Sbjct: 229 DGDDAGFSRVYIPMHADVESLNAAVAGSAILLEARRQRA 267


>gi|169823984|ref|YP_001691595.1| rRNA methylase [Finegoldia magna ATCC 29328]
 gi|167830789|dbj|BAG07705.1| rRNA methylase [Finegoldia magna ATCC 29328]
          Length = 234

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 83/218 (38%), Gaps = 10/218 (4%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             + N +  + ++L +++          L       T+  + I+KI  K+       +  
Sbjct: 24  ELIENKADIVEEVLISEDFNDTEKLINILKEKKIPYTISSKQINKISLKDKE---YVIGV 80

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                       +    ++LD +++  N+G I+RS +AF    +          +  + +
Sbjct: 81  FRKEKSNFQEKNH----IILDGIDNMGNLGTIMRSMLAFGYKNLALISNTCDVYNPKVVR 136

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ GA   +   +  NL D  +        +  L  ++   L     ++  +L  G EG 
Sbjct: 137 ASMGAFFKLNIQKFDNLEDYKKNFPDNKIYSFLLD-ENSNELGDVKFDEPFSLAFGNEGA 195

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL  +      +   ++    + +LN+  A ++A+Y +
Sbjct: 196 GLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYES 231


>gi|216263798|ref|ZP_03435792.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
 gi|215979842|gb|EEC20664.1| tRNA/rRNA methyltransferase [Borrelia afzelii ACA-1]
          Length = 218

 Score =  117 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L  VL+ +   HN  A +R+        I    + +  +  +      G+ + I  
Sbjct: 31  RTNYLTFVLEDIVQSHNASATIRTGEILGLSDIYVIDKNN--KYTLNPDITLGSSQWINL 88

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  N   A+ ++ S G+  +  S S+    LE    N+K+A+  G E  GL  +  E A
Sbjct: 89  NKYKNAKFAIDRLKSDGYSIVATSLSEQSVNLENFPINNKMAVFFGTELTGLSSEVLEAA 148

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M G  ++ N+S A A+ +Y
Sbjct: 149 DLCVKIPMYGFTQSYNISVAVAIVMY 174


>gi|301062443|ref|ZP_07203095.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
 gi|300443443|gb|EFK07556.1| RNA methyltransferase, TrmH family [delta proteobacterium NaphS2]
          Length = 272

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 97/255 (38%), Gaps = 17/255 (6%)

Query: 27  HRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           +  +K+     Q  R   +     L G   +   L   + +   ++ +         D+ 
Sbjct: 11  NTTFKRFLRL-QHPRDIRKHGKALLSGPKQIREVLQEFTDRCAGVICSNR-----HEDSE 64

Query: 87  LPH--PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
            P     P   + P  + K V      + L +  A    P  D + +    + +    DP
Sbjct: 65  FPEVDSLPRYRLSPD-LFKQVDTFGTGKPLLIVRAETFPPFDDTLYHPGCTLCV-PFQDP 122

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA++R++ AF    I+  K  +        + A   +  + + +      AL+++  
Sbjct: 123 SNVGAVIRASAAFGVKQIVMLKEAAHPFHPKSLRVAGSNIFRVSFFQGP----ALRQLKK 178

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                I +S++ K    +    D   L+ G EG G+ P+  + +     + M   +++LN
Sbjct: 179 LEIFLIIMSTEGKDA-ARFEFPDSFCLLPGMEGPGI-PEILKGS-GNVSIPMAKGVESLN 235

Query: 265 VSNAAAVALYITQNH 279
            + A  + LY+ +N 
Sbjct: 236 AAMATGIVLYLWRNR 250


>gi|302380019|ref|ZP_07268498.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312245|gb|EFK94247.1| RNA methyltransferase, TrmH family [Finegoldia magna
           ACS-171-V-Col3]
          Length = 234

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 83/218 (38%), Gaps = 10/218 (4%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             + N +  + ++L +++          L       T+  + I+KI  K+       +  
Sbjct: 24  ELIENKADIVEEVLISEDFNDTEKLINILKEKKIPYTISSKQINKISLKDKE---YVIGV 80

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                       +    ++LD +++  N+G I+RS +AF    +          +    +
Sbjct: 81  FRKEKSNFQEKNH----IILDGIDNMGNLGTIMRSMLAFGYKDLALISNTCDVYNPKAVR 136

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ GA   +   +  NL D  +   +    +  L  +S   L     ++  +L  G EG 
Sbjct: 137 ASMGAFFKLNIQKFDNLEDYKKNFPNNKIYSFLLD-ESSNELGDVKFDEPFSLAFGNEGA 195

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL  +      +   ++    + +LN+  A ++A+Y +
Sbjct: 196 GLPKEYYNE--NKIFINQSKDVDSLNLPIACSIAMYES 231


>gi|330840210|ref|XP_003292112.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum]
 gi|325077666|gb|EGC31364.1| hypothetical protein DICPUDRAFT_40046 [Dictyostelium purpureum]
          Length = 323

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 22/178 (12%)

Query: 125 TLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           + D ++N    L +VL+     HN+G+I R++       I          +  + KS+ G
Sbjct: 138 SFDPIKNKPFGLSVVLEDCRSLHNVGSIFRTSDGSGFSHIYLCGLTGTPLNTQVTKSSLG 197

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI----------------- 224
           + E + +   ++    ++K+       IG+  + +  PL   +                 
Sbjct: 198 SEEMVEWSFSNDSLGVVKKLKEHNVLIIGIEQTSNSVPLLSSLEYIEKMALNNNMENNMD 257

Query: 225 --KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             K   I +++G E  G+          +  L M G   +LNVS    +  YI  +HF
Sbjct: 258 NNKYRPICVVMGNEIAGISEHVINECDIICELPMLGNKNSLNVSITFGIVSYILSHHF 315


>gi|149372809|ref|ZP_01891830.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
 gi|149354506|gb|EDM43071.1| SpoU rRNA methylase family protein [unidentified eubacterium SCB49]
          Length = 170

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + ++ DH++ P N GA+ R   AF  + II        +S+ L ++A    + IPY  +
Sbjct: 18  PITVICDHLDSPANQGALFRVCEAFGVNNIIFFGNTIDIKSSRLKRTARSTEKLIPYSCV 77

Query: 193 SNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETAT 249
           S++ + +  +     + IGL  +SDS    E  I     IALI+G+E  G+     +   
Sbjct: 78  SDIKETIATLKQNNTRLIGLEITSDSAAIQELTIDTQTSIALIIGSEKHGISEDILQYLD 137

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYI 275
           S+ H+ M G   ++NV  +  +ALY 
Sbjct: 138 SVYHITMFGNNSSMNVIQSTGIALYE 163


>gi|111114873|ref|YP_709491.1| spoU protein [Borrelia afzelii PKo]
 gi|110890147|gb|ABH01315.1| spoU protein [Borrelia afzelii PKo]
          Length = 222

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + L  VL+ +   HN  A +R+        I    + +  +  +      G+ + I  
Sbjct: 35  RTNYLTFVLEDIVQSHNASATIRTGEILGLSDIYVIDKNN--KYTLNPDITLGSSQWINL 92

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  N   A+ ++ S G+  +  S S+    LE    N+K+A+  G E  GL  +  E A
Sbjct: 93  NKYKNAKFAIDRLKSDGYSIVATSLSEQSVNLENFPINNKMAVFFGTELTGLSSEVLEAA 152

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M G  ++ N+S A A+ +Y
Sbjct: 153 DLCIKIPMYGFTQSYNISVAVAIVMY 178


>gi|288958794|ref|YP_003449135.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288911102|dbj|BAI72591.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 254

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/256 (22%), Positives = 98/256 (38%), Gaps = 24/256 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +  +K  +S  + SR   +     L G+ TV  AL +   +  ++L    A        
Sbjct: 12  QNPQFKLWESALE-SRGLKKNGKFLLAGLKTVPEALRHHPERFERILF---ADPAQVAGW 67

Query: 86  NLPHPF-PVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVND 143
            LP    PV+  P   + + +       G  L    +   P +D  R  Q L +L  + D
Sbjct: 68  RLPPGVEPVQLAP--ALFRALDLSGT--GFPLLVGAVPKMPAIDLSRPPQGLELLCALGD 123

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+LRSA +F    I+  +  +        ++AS A   +  +R           +
Sbjct: 124 PSNLGALLRSAASFGVSRIVLLEGAAHPFHPKCLRAASNAQFALTLLRGPRWAAV----N 179

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT---SMAHLHMPGII 260
                   L       L +      + LILG EG+G+       A    +   +   G +
Sbjct: 180 DAAGPLYALDGGGA-DLTRFDWPADMRLILGEEGQGVP------ADCPAARLSVPTTGAV 232

Query: 261 KALNVSNAAAVALYIT 276
           ++LN + A +VAL+  
Sbjct: 233 ESLNATVAVSVALFAR 248


>gi|33322913|gb|AAQ07193.1|AF496501_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 115

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLE 221
           I + +     +  + +S  G+  H+  I+ ++L DA+  + +          D + K L 
Sbjct: 1   ILSNKTVDLYNPKVQRSMQGSQFHLNLIK-ADLPDAIASLKAADIPVYASLLDPAAKQLG 59

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 ++ALI+G E  G+ P+    A    ++ + G  ++LN + AA + +Y    HF+
Sbjct: 60  DFAPVAQVALIIGNEAHGVSPEIAALADEKLYIPIKGRAESLNAAVAAGIMIY----HFS 115


>gi|115372384|ref|ZP_01459693.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|310819547|ref|YP_003951905.1| tRNA (guanosine-2'-o-)-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370597|gb|EAU69523.1| rRNA methylase [Stigmatella aurantiaca DW4/3-1]
 gi|309392619|gb|ADO70078.1| tRNA (Guanosine-2'-O-)-methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 226

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 6/174 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           L L+        +   R     +VLD + D  N+ A+LR+  A     +           
Sbjct: 21  LLLDVRKEKIDRVVEQRTRTFTVVLDRLEDSFNMAAVLRTCEAMGVQEVHVVINPEAPFL 80

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
              ++ A G  + +         +  + +   GF     +  +    L     + K+A++
Sbjct: 81  PN-SRVAQGCDKWLDVKLYKTFAECREHLQERGFALYASAIREGATSLYSMRFDSKVAIV 139

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA----LYITQNHFAK 282
            G E  G+             + M G  +++N+S AA+      +   + H  K
Sbjct: 140 FGNERFGVSEDVLAGVDGTFWIPMRGFSQSINISAAASACVSRVMAWREEHLGK 193


>gi|209878796|ref|XP_002140839.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
           RN66]
 gi|209556445|gb|EEA06490.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
           RN66]
          Length = 199

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + +  ++L +++   N GA+LRSA  F    ++     +  +  +      G L +I  
Sbjct: 10  EDFKFYLILMNISKRQNFGALLRSACGFGVSEVL-----AVGKRKLRTFGNKGTLPYISL 64

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                L + ++ +H+     +G+  +++  P+         A ILG EG GL  +  +  
Sbjct: 65  TYYDTLEEVVEIVHAEEMDIVGIEINENSLPVYPHPFRRSTAFILGNEGTGLSQRQIDIC 124

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
             + ++ M G    +LNV+ A ++  +    HFA
Sbjct: 125 DYLVYIPMYGSGTASLNVAIAGSILFH----HFA 154


>gi|307106389|gb|EFN54635.1| hypothetical protein CHLNCDRAFT_17312 [Chlorella variabilis]
          Length = 195

 Score =  116 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 12/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++  +V+  HN+G + R A AF+   +        +        A G+ E++ +   + L
Sbjct: 2   LITYNVSKKHNLGTLARCATAFNVRQLCLVGSRQFNTFG-----AHGSSEYVDFCHYNTL 56

Query: 196 TDALQKMHSW-GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            +  Q +    G   +G+   D  +P+ +       A +LG EG+GL  K      S  +
Sbjct: 57  DECCQDLKDNKGCTVVGVEIIDGAQPVHRFPFRGNTAFMLGNEGQGLNEKQLALCDSFLY 116

Query: 254 LHMPG-IIKALNVSNAAAVALYITQNHFA 281
           +   G    +LNV+ AA++ L+    HFA
Sbjct: 117 IPQYGAGTASLNVAVAASIVLH----HFA 141


>gi|145341523|ref|XP_001415856.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576079|gb|ABO94148.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 207

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 13/146 (8%)

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           +V   HNIG + R   AF    ++       +        + GA  H+ +    +L +A 
Sbjct: 7   NVAKKHNIGTMARCCTAFGVKSLVLIGSRQFNTFG-----SHGADGHVHFEHFDSLEEAR 61

Query: 200 QKMH-SWGF-QTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           +K+    G  Q +G+   D  + +E        A I+G EG G+    +       ++  
Sbjct: 62  EKLKGERGCTQILGVEIVDDARAIESHPFTGNTAFIMGNEGHGMTEAQKAICDGFVYIPQ 121

Query: 257 PG-IIKALNVSNAAAVALYITQNHFA 281
            G    +LNVS AA++ ++    HFA
Sbjct: 122 YGPGTASLNVSVAASIVMH----HFA 143


>gi|297587755|ref|ZP_06946399.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297574444|gb|EFH93164.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 234

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 82/219 (37%), Gaps = 10/219 (4%)

Query: 59  AALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALET 118
             + N +  + ++L +++          L       T+  + I+KI  K+       +  
Sbjct: 24  ELIENKADIVEEVLISEDFNDTEKLINILNDKKIPYTISSKQINKISLKDKE---YVIGV 80

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
                  L    +    ++LD +++  N+G I+RS + F    +          +  + +
Sbjct: 81  FKKQKSKLQEKNH----IILDGIDNMGNLGTIMRSMLGFGYKDLALISNTCDVYNPKVVR 136

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++ GA   +   R  NL D  +        +  L  +S   L         +L  G EG 
Sbjct: 137 ASMGAFFKLNIQRFDNLQDYKKNFPENKIYSFLLD-ESSDELGDVKFEQPFSLAFGNEGA 195

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +      +   ++    + +LN+  A ++A+Y ++
Sbjct: 196 GLPQEYYNE--NKIFINQSKDVDSLNLPIACSIAMYQSR 232


>gi|260803697|ref|XP_002596726.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
 gi|229281985|gb|EEN52738.1| hypothetical protein BRAFLDRAFT_241058 [Branchiostoma floridae]
          Length = 309

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 97/308 (31%), Gaps = 61/308 (19%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           ++K+ +  +  +   +   + L G   +  A+      +  L      +  L+       
Sbjct: 5   FRKLLATVKSKKRRDKEGLILLEGKRLIKDAIKAGG-ILESLFFCH--VEDLEGLPLQET 61

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPH 145
              +  V  + I          + +A+ T P    L +P         L ++ D++ DP 
Sbjct: 62  TAELYKVKHKDILDWSDTVTPQKVIAIFTRPDVNRLYTPEYADAELLPLTLICDNIRDPG 121

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL--------TD 197
           N+G I+RSA A  C  ++ TK       + + ++ + A  H+P I+             D
Sbjct: 122 NMGTIIRSAAAAGCQKLLVTKGCVDVWESKVLRAGASAHFHLPIIKDLTWDLIPNYLEPD 181

Query: 198 ALQKMHSWGFQT---IGL----------------------SSDSKKPLEQEIKN------ 226
            +               L                       +   +    ++        
Sbjct: 182 TVVFPADANVDVNNKFTLFHPPLSNVRRSVAARRRQTEDPDTSGDEDFRHDLPTSLPELV 241

Query: 227 -----------DKIALILGAEGKG----LRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                         AL++G E +G         ++T      + M   + +LN + AA+V
Sbjct: 242 AVPYYSTHWVGGSTALVVGGETEGLSLESLLLCEKTGGCRVFVPMLRNLDSLNSAVAASV 301

Query: 272 ALYITQNH 279
            L+  +  
Sbjct: 302 VLFEAKRQ 309


>gi|70950868|ref|XP_744721.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524790|emb|CAH77939.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 233

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 5/144 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S++ +V+ ++    NIG I+RS VAF+   I    R   ++       + G   +I    
Sbjct: 25  SKMYVVIYNIGKKKNIGNIVRSCVAFNVSEIFVVGR---NKKETSFFGSMGTHGYIKIRY 81

Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            +N+ +  Q +++          ++   P+ ++  N  IA + G EG G+  +       
Sbjct: 82  FTNMIELKQYLNNNDILLYACEITNQSIPITEQPFNKDIAFLFGNEGTGISEQIINMCDK 141

Query: 251 MAHLHMPG-IIKALNVSNAAAVAL 273
           + ++   G    +LNVS + A+ L
Sbjct: 142 IIYIPQYGNGTASLNVSVSCAIIL 165


>gi|227505968|ref|ZP_03936017.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227197490|gb|EEI77538.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 123

 Score =  115 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETA 248
            R++N+T  +Q+  + G+Q +GL +  +  L+      D + +++G+EGKG+    +E  
Sbjct: 28  ARVTNVTRTVQEFQNAGYQVVGLDAGGEHTLDTYTGGKDPVVIVIGSEGKGISRLVRENC 87

Query: 249 TSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
             +  + M   +++LN S AA   L  +  +   AK
Sbjct: 88  DVIVSIPMTAWVESLNASVAAGAVLSEFARRRRAAK 123


>gi|256825068|ref|YP_003149028.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256688461|gb|ACV06263.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 229

 Score =  115 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 7/225 (3%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK--TVPPQTIDKIVGKEAVHQGLA 115
              L         +  T++ L R      L    PV    V    + ++V       G+ 
Sbjct: 2   RELLRWQPELADDVFVTRDFLDRSPEFVELVAETPVHAHLVSDAVV-RVVADADTPPGIV 60

Query: 116 LETAPLLSPTLDAVRN---SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
                  +   D +          VL  V DP N+G ++R+A A     ++ T       
Sbjct: 61  AVARWQPADLADCLGRLGPQGFGAVLSEVRDPGNLGTVIRAADAAGAAFVVVTDASVDVT 120

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
           +  + +S +G+L HI  +      D L+       + +     +   L +   +     +
Sbjct: 121 NPKVVRSTAGSLHHIDVVTGIAFPD-LRAATGGTVRLVAADGYASTQLPEADLDGPHLWV 179

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            G E +GL         +   + + G  ++LN+  AAAV LY + 
Sbjct: 180 FGNEARGLPDDQVAACDAAVAVPLHGRAESLNLGTAAAVCLYASA 224


>gi|254392368|ref|ZP_05007551.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|197706038|gb|EDY51850.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 268

 Score =  115 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 20/241 (8%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKTV 96
            + P+ + L G H +  AL   +    +   T +  A L     L           +  V
Sbjct: 21  ATAPDGVLLDGFHALKHALRFQAD--IRCAITSDRAAVLALADALAPDVRERIAELLTEV 78

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRS 153
            P+T+ +++ +    +  AL   P     LD +        +++LD+  +  N+GA++R 
Sbjct: 79  APETLRELLPRVHPTRVAALAVRPGRRDRLDLLSARPRHAPVVLLDNPRNLGNVGAVVRL 138

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F   G+ITT            ++ +G        R+    D L      G   + L 
Sbjct: 139 AAGFGATGVITTGDL-DPWHPNAVRAGAGLHYATAVARLD--PDDLP-----GGPLLVLD 190

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +        + +D + L+ G+E  G+ P+ +  AT +  L M   + + N++ + A+ L
Sbjct: 191 PEGDDIRTVALPDDAL-LVFGSERHGVSPELRARATRLLSLPMRPQVSSYNLATSVAMTL 249

Query: 274 Y 274
           +
Sbjct: 250 F 250


>gi|291405419|ref|XP_002718940.1| PREDICTED: RNA methyltransferase like 1 [Oryctolagus cuniculus]
          Length = 413

 Score =  115 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 98/302 (32%), Gaps = 69/302 (22%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP-------HP 90
           +      +   + L G   ++ AL   +    Q+       +RL++   LP         
Sbjct: 108 KSRPFREKQGKILLEGRRLIADALKAGAAP--QVFF----FSRLEYIKELPVEKLKGVRL 161

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLA-LETAP----LLSPTLDAVRNSQLLMVLDHVNDPH 145
             VK    +    +V      QG+  +   P    +  P      +  LL++ D++ DP 
Sbjct: 162 VKVKFEDIKDWSDLV----TPQGIMGIFAKPDYSKMTYPESQRHHSLPLLLICDNLRDPG 217

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N+G +LRSA    C  ++ TK    +    + ++  GA   +P I         + +   
Sbjct: 218 NLGTVLRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPVINNLEWEAVPEHLPPN 277

Query: 203 ------HSWGFQTIGLSSDSK----------------------------------KPLEQ 222
                  + G      +SD                                    +  + 
Sbjct: 278 TRVYVADNCGLYAQAHASDKAGVCDPRFLKFHKSKEEVEELENGAGKGWLPELEVQSYDL 337

Query: 223 EIKNDKIALILGAEGKGLRPKTQ----ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +      A+++G E  G+  ++      T      + +   + +LN + AA++ L+  + 
Sbjct: 338 DWTEAPAAVVIGGETHGVSLESLWLAERTGGKRLLIPVVPGVDSLNSAMAASILLFEGKR 397

Query: 279 HF 280
             
Sbjct: 398 QL 399


>gi|108758120|ref|YP_629729.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus
           xanthus DK 1622]
 gi|108462000|gb|ABF87185.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Myxococcus
           xanthus DK 1622]
          Length = 225

 Score =  115 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 2/161 (1%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
             L+        + + R     +VLD + D  N+ A+LR+  +     +           
Sbjct: 21  FLLDVRKEKIDRVVSHRTRNFTVVLDRLEDSFNMAAVLRTCESMGVQEVHIIINPEAPFV 80

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
              ++ A G  + +         +  + + S GF     +  +    L     + K+AL+
Sbjct: 81  PN-SRVAQGCDKWLDVKLYRTFAECREHLKSRGFSLYASAIQEGATSLYTLRFDGKMALV 139

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            G E +G+             + M G  ++LN+S AA+  +
Sbjct: 140 FGNERRGVSEDVLAGVDGTFWVPMKGFSQSLNISAAASACI 180


>gi|326442221|ref|ZP_08216955.1| rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 264

 Score =  115 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 20/241 (8%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKTV 96
            + P+ + L G H +  AL   +    +   T +  A L     L           +  V
Sbjct: 17  ATAPDGVLLDGFHALKHALRFQAD--IRCAITSDRAAVLALADALAPDVRERIAELLTEV 74

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRS 153
            P+T+ +++ +    +  AL   P     LD +        +++LD+  +  N+GA++R 
Sbjct: 75  APETLRELLPRVHPTRVAALAVRPGRRDRLDLLSARPRHAPVVLLDNPRNLGNVGAVVRL 134

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F   G+ITT            ++ +G        R+    D L      G   + L 
Sbjct: 135 AAGFGATGVITTGDL-DPWHPNAVRAGAGLHYATAVARLD--PDDLP-----GGPLLVLD 186

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +        + +D + L+ G+E  G+ P+ +  AT +  L M   + + N++ + A+ L
Sbjct: 187 PEGDDIRTVALPDDAL-LVFGSERHGVSPELRARATRLLSLPMRPQVSSYNLATSVAMTL 245

Query: 274 Y 274
           +
Sbjct: 246 F 246


>gi|294813801|ref|ZP_06772444.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294326400|gb|EFG08043.1| rRNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 267

 Score =  115 bits (289), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 20/241 (8%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKTV 96
            + P+ + L G H +  AL   +    +   T +  A L     L           +  V
Sbjct: 20  ATAPDGVLLDGFHALKHALRFQAD--IRCAITSDRAAVLALADALAPDVRERIAELLTEV 77

Query: 97  PPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRS 153
            P+T+ +++ +    +  AL   P     LD +        +++LD+  +  N+GA++R 
Sbjct: 78  APETLRELLPRVHPTRVAALAVRPGRRDRLDLLSARPRHAPVVLLDNPRNLGNVGAVVRL 137

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A  F   G+ITT            ++ +G        R+    D L      G   + L 
Sbjct: 138 AAGFGATGVITTGDL-DPWHPNAVRAGAGLHYATAVARLD--PDDLP-----GGPLLVLD 189

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +        + +D + L+ G+E  G+ P+ +  AT +  L M   + + N++ + A+ L
Sbjct: 190 PEGDDIRTVALPDDAL-LVFGSERHGVSPELRARATRLLSLPMRPQVSSYNLATSVAMTL 248

Query: 274 Y 274
           +
Sbjct: 249 F 249


>gi|320538050|ref|ZP_08037952.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421]
 gi|320145105|gb|EFW36819.1| RNA methyltransferase, TrmH family [Treponema phagedenis F0421]
          Length = 268

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 66/148 (44%), Gaps = 11/148 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + ++++  P N+G+I R+A AF  + I  ++     +     +SA G +E +P+    +L
Sbjct: 123 VYVENIRAPFNLGSIFRTAEAFGAEKIFLSEDCVSPQQPRAIRSAMGTIELVPWEHC-DL 181

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254
            +  + +         L +    P+      +K  +++G+E  GL P+    AT+    +
Sbjct: 182 ENLPKDL-----PVFALET-GGTPIHSFRFPEKGIVMIGSEELGLSPQALRRATAGTVSI 235

Query: 255 HMPGIIKALNVSNAAAVALY---ITQNH 279
            M G   ++NV  A  + ++       H
Sbjct: 236 PMYGSKASINVGVAFGILMHAWIEAVRH 263


>gi|307331242|ref|ZP_07610366.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
 gi|306883120|gb|EFN14182.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces violaceusniger Tu
           4113]
          Length = 253

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 20/242 (8%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKT 95
             + PE + L G H +  AL   +    +   T +  A ++  A+L           +  
Sbjct: 14  RATAPETVLLDGFHALKHALRFGAE--VRAAVTSDKAAAVELAADLADDLTETIADLLVE 71

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILR 152
           V   T+  +V +    +  AL         LD +        ++VLD+  +  N+GA++R
Sbjct: 72  VEAGTLRDLVPRVHPTRVAALAVRRGRQGNLDELSKRPRAAPVVVLDNPRNLGNVGAVVR 131

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
            A  F   G++TT            +S +G        R+    DAL +          L
Sbjct: 132 LAAGFGATGVVTTGDI-DPWHPNAVRSGAGLHFATAVERLPG--DALPE-----GPLYVL 183

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            ++ +      I +D + L  G+E  G+ P+ ++ AT +  L M   + + N++ + A+A
Sbjct: 184 DAEGEDIRSVTIPDDAL-LAFGSERHGISPELRKRATRLVALPMRPQVSSYNLATSVAMA 242

Query: 273 LY 274
           L+
Sbjct: 243 LF 244


>gi|297620440|ref|YP_003708577.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297375741|gb|ADI37571.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 225

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 10/160 (6%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           +  P++   + +++ +      +  +D HN  A++R+A A          +         
Sbjct: 34  KIDPVVKYRIQSIQTAA-----EAPSDIHNALAMVRTAEALGLTDAHLIGK---PRKGRG 85

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            ++  G+   +     S+L    + M   GF   G +     PL     +     + G E
Sbjct: 86  RQTMRGSDRWMNLHSHSSLDTFQKSMK--GFVIYGATPHGNTPLHALSLDRPCCFLFGNE 143

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             GL        TS   + M G  ++ N+S AAA+ L+  
Sbjct: 144 KNGLTDAALNICTSHFTIPMYGFCESFNLSVAAAITLHHA 183


>gi|68491121|ref|XP_710624.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
 gi|46431850|gb|EAK91373.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
          Length = 396

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 85/264 (32%), Gaps = 60/264 (22%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGV 54
           KI   K       +   R  +  +    K ++     +                 +++G 
Sbjct: 101 KIAHEKSLQEKAYQERERARELAREAKGKGKNFKSGGSSNYDTGVMVDRNDTIFDYVFGT 160

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           H V A L    R+I  L    N    +   A   +    K +  +    I+ K  VH G+
Sbjct: 161 HPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEKYGIVPKRLKDKNALNILCKNGVHNGV 220

Query: 115 ALETAPLLSPTLDAVRNS------------------------------------------ 132
            L+T  L  P +  V ++                                          
Sbjct: 221 VLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDDDGEVKVKTKKVIRDDDIEQIEE 280

Query: 133 --QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L + LD + DP N+G+ILRSA  F  D I+     +     V  K+++GAL+ I   
Sbjct: 281 LYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIY 340

Query: 191 RISNLTDALQKMHSWGFQTIGLSS 214
           +  +    +  +   G+  I  S 
Sbjct: 341 QTGSSLKFIDSVRQNGWHVISTSG 364


>gi|295134598|ref|YP_003585274.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
 gi|294982613|gb|ADF53078.1| TrmH family tRNA/rRNA methyltransferase [Zunongwangia profunda
           SM-A87]
          Length = 168

 Score =  115 bits (288), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   + +VLDH++   NIG+I R + AF  + II         S  L K++    E++ +
Sbjct: 13  KKFPVTLVLDHISGEANIGSIFRLSDAFHVEEIIFCGTEPNLNSNRLKKTSRSTHEYVKF 72

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQE 246
               N T  ++   +  +  I L  + +  P++Q     ++K+ LI G E  G+      
Sbjct: 73  QFSENPTAIIKGKKAEAYSIIALEITQNSVPIQQLELKPSEKVVLIAGHENFGISEDLLR 132

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYI 275
              S+ H+ M G   ++NV+ A  ++LY 
Sbjct: 133 LCDSIVHIPMFGNNSSMNVAQAIGISLYE 161


>gi|312149761|gb|ADQ29832.1| putative tRNA/rRNA methyltransferase [Borrelia burgdorferi N40]
          Length = 218

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R + L  VL+ +    N  A +R+        +   ++ +  +  +      G+ + I
Sbjct: 29  SLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKN--KHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +   
Sbjct: 87  NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A     + M G  ++ N+S A A+ +Y       K
Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|68491148|ref|XP_710610.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
 gi|46431834|gb|EAK91358.1| potential mitochondrial ribosomal RNA methylase [Candida albicans
           SC5314]
          Length = 396

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 85/264 (32%), Gaps = 60/264 (22%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPEN----------------LFLYGV 54
           KI   K       +   R  +  +    K ++     +                 +++G 
Sbjct: 101 KIAHEKSLQEKAYQERERARELAREAKGKGKNFKSGGSSNYDTGVMVDRNDTIFDYVFGT 160

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL 114
           H V A L    R+I  L    N    +   A   +    K +  +    I+ K  VH G+
Sbjct: 161 HPVKAVLMAGKRRILDLYTFNNEDPDIVKLAMEKYGIIPKRLKDKNALNILCKNGVHNGV 220

Query: 115 ALETAPLLSPTLDAVRNS------------------------------------------ 132
            L+T  L  P +  V ++                                          
Sbjct: 221 VLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDDDGEVKVKTKKVIRDDDIEQIEE 280

Query: 133 --QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L + LD + DP N+G+ILRSA  F  D I+     +     V  K+++GAL+ I   
Sbjct: 281 LYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKASAGALDLIDIY 340

Query: 191 RISNLTDALQKMHSWGFQTIGLSS 214
           +  +    +  +   G+  I  S 
Sbjct: 341 QTGSSLKFIDSVRQNGWHVISTSG 364


>gi|154250971|ref|YP_001411795.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans
           DS-1]
 gi|154154921|gb|ABS62138.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans
           DS-1]
          Length = 256

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 94/256 (36%), Gaps = 19/256 (7%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
            +   K+  S  + +R   +     L G  TV  AL     +   +LA K   A      
Sbjct: 13  QNAQAKRWLSLTE-TRGIKKHGAFLLSGRKTVPEALKRHGVRFTAVLAAK---AEDAEAL 68

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDP 144
            LP       V    + +++       G  L    +      D  +  + L +L  + DP
Sbjct: 69  PLPAGIARYAVGRA-LFEMLDTNGT--GFPLLAGEVPEMAAADFSKPPKGLELLCALGDP 125

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA+LRSA AF    ++  +  +        +  + A   + ++R    +     +  
Sbjct: 126 ANLGALLRSAAAFGVSRVVLMEGAAHPFHPKALRGGANAQFEMSFLRGGGWS----ALEG 181

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                + L   +   +        + L+LG EG G+ P    T      +   G +++LN
Sbjct: 182 AKGPLVALDG-AGADMTAYDWPRDLRLVLGEEGLGVPPALAAT---RLAIATTGRVESLN 237

Query: 265 VSNAAAVAL---YITQ 277
            + AA++AL   Y  +
Sbjct: 238 ATVAASLALQAWYEAR 253


>gi|300869138|ref|ZP_07113736.1| Heat shock protein DnaJ-like protein (modular protein)
           [Oscillatoria sp. PCC 6506]
 gi|300332865|emb|CBN58934.1| Heat shock protein DnaJ-like protein (modular protein)
           [Oscillatoria sp. PCC 6506]
          Length = 517

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 29/221 (13%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           I S+++    ++R+ H            S+   +     L G H +  A       +  +
Sbjct: 2   ITSVQNPLVKEIRKLHA-----------SKGRREQGFFLLEGTHLLEEACAQKH-PLATV 49

Query: 72  LATKNALAR--LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T     R    W         V+ V  + ++ I         +A  TAP     + +V
Sbjct: 50  CYTSEWQERHPQLWKKVCLQARRVELVSDRVLEAIATTVQPDGAIA--TAPR--SEMQSV 105

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L + L+ V DP N+G I+R+A A   DG+  +      +   + +S++GA   +P 
Sbjct: 106 ATASLGLALETVQDPGNLGTIIRTAAAAGADGLWLSGDSVDLDHPKVLRSSAGAWFRLPM 165

Query: 190 IRISNLTDALQKMHSWGFQ-----------TIGLSSDSKKP 219
               +L   + +    G Q            +GLS D+   
Sbjct: 166 AVTYDLKAEISRCQHQGMQNFRNFTRCKFDLLGLSRDASVD 206


>gi|15594398|ref|NP_212186.1| spoU protein (spoU) [Borrelia burgdorferi B31]
 gi|218249703|ref|YP_002374583.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
 gi|221217482|ref|ZP_03588953.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
 gi|224533884|ref|ZP_03674469.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|225549731|ref|ZP_03770696.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
 gi|226322036|ref|ZP_03797561.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
 gi|3915341|sp|O51081|Y052_BORBU RecName: Full=Putative tRNA/rRNA methyltransferase BB_0052
 gi|2687923|gb|AAC66431.1| spoU protein (spoU) [Borrelia burgdorferi B31]
 gi|218164891|gb|ACK74952.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi ZS7]
 gi|221192760|gb|EEE18976.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 72a]
 gi|224512887|gb|EEF83253.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|225369691|gb|EEG99139.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 118a]
 gi|226232626|gb|EEH31380.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi Bol26]
          Length = 218

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 3/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R + L  VL+ +    N  A +R+        +   ++ +  +  +      G+ + I 
Sbjct: 30  LRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKN--KHTLNPDVTLGSSQWIN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +    
Sbjct: 88  LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLGA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G  ++ N+S A A+ +Y       K
Sbjct: 148 ADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|116791065|gb|ABK25846.1| unknown [Picea sitchensis]
          Length = 236

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            +++ +V   HNIG ++R+A AF    +I   R   +        + G+  H+ +     
Sbjct: 4   FVIVHNVAKRHNIGTLVRTATAFGVSEVILVGRKDFNAFG-----SHGSTLHLNFRHFYT 58

Query: 195 LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L  A Q +        G+  +D    + +       A +LG EG GL  K  E      +
Sbjct: 59  LQQAHQYLKDKDSDICGVEIADGAIAVHEHPFKKSTAFLLGNEGTGLSSKEMEICDYFVY 118

Query: 254 LHMPG-IIKALNVSNAAAVALYITQNHFA 281
           +   G    +LNV+ AA++ L+    HFA
Sbjct: 119 ISQYGCGTASLNVTVAASIVLH----HFA 143


>gi|255551565|ref|XP_002516828.1| rRNA methylase, putative [Ricinus communis]
 gi|223543916|gb|EEF45442.1| rRNA methylase, putative [Ricinus communis]
          Length = 216

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +++ ++   HN+G + RSA AF    +I   R   +        + G+  H+ +    +L
Sbjct: 7   VLVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFG-----SHGSTSHLRFRHFHSL 61

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            +A   +        G+  +D   P+ +       A +LG EG GL  K  E      ++
Sbjct: 62  LNARDYLKEKECDICGVEITDGALPVNEHPFKKSTAFLLGNEGTGLSAKECEICDFFVYI 121

Query: 255 HMPG-IIKALNVSNAAAVALYITQNHFA 281
              G    +LNV+ AA++ L+    HF 
Sbjct: 122 PQYGRGTASLNVTVAASIVLH----HFG 145


>gi|330836124|ref|YP_004410765.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748027|gb|AEC01383.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 265

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 5/147 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++LD +  P+NIGA+ R+A +F    II  +  +        ++A G  E + +  
Sbjct: 117 RPFTVILDRIRSPYNIGALFRTADSFGVKEIILIEGCASPLHTRAKRTARGCTETVDWSM 176

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
           +      +  +H        L +            + I  ++G E  G+ P         
Sbjct: 177 MDE-ESVIDLIHRRKVPVFALETGGVNIAGFPFPPEGIM-VVGNEEFGVSPALLRACQES 234

Query: 251 --MAHLHMPGIIKALNVSNAAAVALYI 275
                L   G   +LNVS A  + ++ 
Sbjct: 235 AGRLSLLQAGTKASLNVSVAFGIVMHA 261


>gi|256786656|ref|ZP_05525087.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289770551|ref|ZP_06529929.1| rRNA methylase [Streptomyces lividans TK24]
 gi|289700750|gb|EFD68179.1| rRNA methylase [Streptomyces lividans TK24]
          Length = 261

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 26/245 (10%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKT 95
           H +    + L G H +  AL   +     +  T +    L     L           +  
Sbjct: 19  HRNAGRCVLLDGFHALKHALRFGAEVP--VAVTSDRAGALALAGELAPDVREVLAGLLTE 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILR 152
           V  +    +V +       AL   P  +  L+A+ ++     ++VLD   +  N GA++R
Sbjct: 77  VSREAYASLVARPHPTAVAALAVRPSRAAGLEALAHTPRRAPVVVLDQPRNLGNAGAVIR 136

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ---T 209
            A  F   G++TT          + +  +G                ++++   G      
Sbjct: 137 LAAGFGATGVVTTG-TLDPWHPTVVRGGAGLHF----------ATVVERLEVAGLPPGPL 185

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             L  + +     E+ +D + L  G+E  GL P+ +  A  +  L M   + + N++ + 
Sbjct: 186 FALDPEGEDIRGLELPDDAL-LAFGSERSGLTPELRARADRLVALPMRPQVSSYNLATSV 244

Query: 270 AVALY 274
           A+ LY
Sbjct: 245 AMTLY 249


>gi|270001605|gb|EEZ98052.1| hypothetical protein TcasGA2_TC000457 [Tribolium castaneum]
          Length = 1259

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 4/149 (2%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGALEHI 187
            + +  ++V   +    N+G + R+   F    I+    K  S  E   L+ S+  ++E +
Sbjct: 1105 QENNFILVTTLIEKSTNLGGLSRTCEVFGIKQIVMRTAKIISDKEFKSLSMSSENSVEIL 1164

Query: 188  PYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQE 246
               +  +L   +  M + G+  +G    S+   L+    + K  L+LG E +G+ P    
Sbjct: 1165 EV-KPEDLASFILNMKAQGYSVVGAEQTSESVKLDAFRFDKKTVLVLGNEKEGIPPDLIP 1223

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALYI 275
                   +   G++++LNV  A A+ ++ 
Sbjct: 1224 LLDHCIEIPQFGLVRSLNVHVAGAIVIWE 1252


>gi|226320776|ref|ZP_03796332.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
 gi|226233831|gb|EEH32556.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 29805]
          Length = 218

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R + L  VL+ +    N  A +R+        +   ++ +  +  +      G+ + I
Sbjct: 29  SLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKN--KHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +   
Sbjct: 87  NLNKYRNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A     + M G  ++ N+S A A+ +Y       K
Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|328464784|gb|EGF36099.1| rRNA methylase [Lactobacillus helveticus MTCC 5463]
          Length = 208

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 12/178 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           +  +     + G H    A+ +   K   LL T+ AL + + D ++        +  + I
Sbjct: 23  YRDEEGRYLIEGFHLFDEAIKSGQ-KYQYLLGTEEALDKAEEDYDVDLSGKNVILINKAI 81

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL----LMVLDHVNDPHNIGAILRSAVAF 157
            + +      Q + +         +D  R         ++LD++ DP N+G I+R+A A 
Sbjct: 82  ARHLSSTKNSQEIFMVLK------IDQPREFPFNYGKWVLLDNLADPGNVGTIIRTADAA 135

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD 215
             DG++ +   +   +    ++  G+  HI  I+  +L D +               D
Sbjct: 136 GFDGVVLSPESADLYNPKTQRAMQGSQFHIDLIK-RDLADVITDFQDAAIPVYASMLD 192


>gi|302792753|ref|XP_002978142.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
 gi|300154163|gb|EFJ20799.1| hypothetical protein SELMODRAFT_107928 [Selaginella moellendorffii]
          Length = 220

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  +V+ +V   HNIG + RSA AF    +I   +   +     +  + G+  H+ +   
Sbjct: 2   ECYVVVHNVAKRHNIGTLARSATAFGVSEMILVGKKDFN-----SFGSHGSAHHVRFRHF 56

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +L +A   +   G    G+  ++    + +       A +LG EG GL PK  E     
Sbjct: 57  HSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLSPKEMEICDFF 116

Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
            ++   G    +LNV+ AA++ L+    HF+
Sbjct: 117 TYIPQVGCGTASLNVTVAASIVLH----HFS 143


>gi|195941791|ref|ZP_03087173.1| spoU protein (spoU) [Borrelia burgdorferi 80a]
          Length = 218

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           + R + L  VL+ +    N  A +R+        +   ++ +  +  +      G+ + I
Sbjct: 29  SFRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKN--KHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  GAE  GL  +   
Sbjct: 87  NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGAELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A     + M G  ++ N+S A A+ +Y       K
Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|332289500|ref|YP_004420352.1| putative methyltransferase [Gallibacterium anatis UMN179]
 gi|330432396|gb|AEC17455.1| putative methyltransferase [Gallibacterium anatis UMN179]
          Length = 357

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 20/243 (8%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
             ++ E + +YG     A   +  + I +L  T+    +     +    +      V   
Sbjct: 119 RQNRAEEVKVYGEAACFALFEHRPQDIVRLWVTQELTKKAGEMMSYLAENKKAYHVVKGD 178

Query: 100 TIDKIVGKEAVHQGLALETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + ++V     H G+ L        +L   L+  +    ++VLD + +  NIG +L++  
Sbjct: 179 EL-QLVSGTEHHGGICLLVKKRPPLMLKSYLETPKKRDCIVVLDGIGNAANIGGVLKTLA 237

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-S 214
            +    ++T K  +  +S    + A G +E++    +++ T AL  +   G+Q I  S S
Sbjct: 238 FYGVQNVVTDKIDAV-QSPAAMRVAEGGIEYLRLFEVAHPTLALDLLKQAGYQLIRASLS 296

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT---SMAHLHMPGI-IKALNVSNAAA 270
                L +    DK+A++       L   T +      +   L         LNV+  A 
Sbjct: 297 KQAIALNKLELQDKVAIV-------LSENTIKDLDPEVTNVALSTTNPLATGLNVAVTAG 349

Query: 271 VAL 273
           V L
Sbjct: 350 VLL 352


>gi|21222245|ref|NP_628024.1| rRNA methylase [Streptomyces coelicolor A3(2)]
 gi|5102788|emb|CAB45203.1| putative rRNA methylase [Streptomyces coelicolor A3(2)]
          Length = 261

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 26/245 (10%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP------VKT 95
           H +    + L G H +  AL   +     +  T +    L     L           +  
Sbjct: 19  HRNAGRCVLLDGFHALKHALRFGAEVP--VAVTSDRAGALALADELAPDVREVLAGLLTE 76

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILR 152
           V  +    +V +       AL   P  +  L+A+  +     ++VLD   +  N GA++R
Sbjct: 77  VSREAYASLVARPHPTAVAALAVRPSRAAGLEALARTPRRAPVVVLDQPRNLGNAGAVIR 136

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ---T 209
            A  F   G++TT          + +  +G                ++++   G      
Sbjct: 137 LAAGFGATGVVTTG-TLDPWHPTVVRGGAGLHF----------ATVVERLEVAGLPPGPL 185

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
             L  + +     E+ +D + L  G+E  GL P+ +  A  +  L M   + + N++ + 
Sbjct: 186 FALDPEGEDIRGLELPDDAL-LAFGSERSGLTPELRARADRLVALPMRPQVSSYNLATSV 244

Query: 270 AVALY 274
           A+ LY
Sbjct: 245 AMTLY 249


>gi|257457024|ref|ZP_05622205.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
 gi|257445733|gb|EEV20795.1| RNA methyltransferase, TrmH family [Treponema vincentii ATCC 35580]
          Length = 295

 Score =  114 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 64/151 (42%), Gaps = 13/151 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +  + +  P N+G+I R+A AF  + ++ ++     E     +SA G    +P+  
Sbjct: 150 PGVYVYAEDIRAPFNLGSIFRTAEAFGAEKLLLSEGCVSPEQPRAQRSAMGCTRFLPWEY 209

Query: 192 IS--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               ++          G     L +    P+       +  ++LG+E  GL  +  + A+
Sbjct: 210 CPLGSMP--------AGLPVFALET-GGTPITSFPFPKQGIVLLGSEELGLSAEALKRAS 260

Query: 250 S-MAHLHMPGIIKALNVSNAAAVAL-YITQN 278
           + +  + M GI  +LNV+ A  + + Y   +
Sbjct: 261 AGIVSIPMKGIKASLNVAVAFGILMQYWAAS 291


>gi|256752503|ref|ZP_05493360.1| RNA 2-O ribose methyltransferase substrate binding
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748638|gb|EEU61685.1| RNA 2-O ribose methyltransferase substrate binding
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 158

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 11/131 (8%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDK 103
            E   + G + V  A+ +    I ++  +K A   +    NL       V T     + K
Sbjct: 2   EEQNVILGRNPVIEAIKSGKE-IEKIYVSKTAGGNISKIINLAKEAGIVVSTTDNDILSK 60

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV-------RNSQLLMVLDHVNDPHNIGAILRSAVA 156
           + G +  HQG+    A      +D +       +    L++LD + DPHN+GAI+RSA A
Sbjct: 61  LAGSQ-NHQGVVAVGAVYKYFDVDDLLEYAEQRKEKPFLLILDEITDPHNLGAIIRSAEA 119

Query: 157 FSCDGIITTKR 167
           F   GII  K+
Sbjct: 120 FGVHGIIIPKK 130


>gi|302766003|ref|XP_002966422.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
 gi|300165842|gb|EFJ32449.1| hypothetical protein SELMODRAFT_86381 [Selaginella moellendorffii]
          Length = 220

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  +V+ +V   HNIG + RSA AF    +I   +   +     +  + G+  H+ +   
Sbjct: 2   ECYVVVHNVAKRHNIGTLARSATAFGVSEMILVGKKDFN-----SFGSHGSAHHVRFRHF 56

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +L +A   +   G    G+  ++    + +       A +LG EG GL PK  E     
Sbjct: 57  HSLLEARDYLKGIGCDICGVEITEGAVAVHKHPFQRSTAFLLGNEGTGLSPKEMEICDFF 116

Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
            ++   G    +LNV+ AA++ L+    HF+
Sbjct: 117 TYIPQVGSGTASLNVTVAASIVLH----HFS 143


>gi|309775950|ref|ZP_07670942.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916232|gb|EFP61980.1| RNA methyltransferase, TrmH family, group 3 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 161

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 16/162 (9%)

Query: 127 DAVRNSQLLMVL-DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           D  ++ Q+ + L + V DP N G ILR+  A  CDG+I   R   S + V+ K+++GA E
Sbjct: 3   DVCKSEQVFLALIEGVEDPFNFGYILRTLYAAGCDGVIIPPRNWTSAAGVVTKASAGASE 62

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           ++  I  +++   LQ+M       +     +   L       ++ L +G E +GL    Q
Sbjct: 63  YLNLIIANDMDALLQEMKQKDITLVCGQRSNAISLYAYTFPQRVCLAIGGEMRGLSKSVQ 122

Query: 246 ETATSMAHLH--------MPGIIKALNVSNAAAVALYITQNH 279
             +    ++         M         + + A+  +     
Sbjct: 123 GHSDQNLYIPYRQDFRNAMT-------AAASTAIFAFELVRQ 157


>gi|281212010|gb|EFA86171.1| probable prespore-specific protein [Polysphondylium pallidum PN500]
          Length = 637

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 105/309 (33%), Gaps = 87/309 (28%)

Query: 51  LYGVHTVSAA-LNNPSRKIFQLLATKNALARLDWDAN--------LPHPFPVKTVPPQTI 101
           + G  +V +  LN     + +L   ++   +   +             P+ +     Q +
Sbjct: 241 ITGFRSVLSCFLNRKGNDLRRLYINQSIYEKNKAELKDIVKYFSDARKPYRLFADDDQQM 300

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNS----------------------------- 132
           +K V +   H+G+ L   P    T+D                                  
Sbjct: 301 EK-VSQSKHHEGICLVVRPKSPLTIDDAMQKEFQKTKTNITPTKKHSIMDSSSNNNNNNS 359

Query: 133 ------------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-------KRYSPSES 173
                        ++++LD+V +PHNIGAI+RS  +F    +                 S
Sbjct: 360 SNNKTDSTVFGRPIVVLLDNVENPHNIGAIIRSCASFGVKTVFAYNEFGANSGGRINPLS 419

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHS---WGFQTI-------------------G 211
               +++ GA+E++  + I   ++A+  +      G+Q I                    
Sbjct: 420 TSSYRASRGAMEYVDVVPIDIRSEAINMIKKFVAQGWQVISTSGDNSSSSSSNKNSGDEV 479

Query: 212 LSSDSKKP--LEQEIKND-----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +SS    P  L  +          + ++ G+E  G+     + +T+   +   G+I  LN
Sbjct: 480 VSSKLPSPIRLYSDRATKLLGVNPLMIVFGSESDGVSKGIVKLSTNTLVIPSTGLIDCLN 539

Query: 265 VSNAAAVAL 273
           VS A ++ L
Sbjct: 540 VSQALSIVL 548


>gi|302336862|ref|YP_003802068.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301634047|gb|ADK79474.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 289

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 119 APLLSPTLDAVRNS-QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            PL     + VR   +L + LD +  P N+G+I R+A +F    I  +   +        
Sbjct: 103 KPLEEGGCEQVRKIIELDLYLDDIRSPFNVGSIFRAAESFGVRKIFLSPGSADPRHPRAQ 162

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +SA G ++ +P+ R S+  +   + H+   + + L +    PL +        L++G+E 
Sbjct: 163 RSAMGCVDIVPWCR-SSFEEM--QTHTTSNKIVALET-GGCPLHEFHFPAGGILVIGSEE 218

Query: 238 KGLRPKTQETATSM---AHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G+ P   E A+       +   G   +LNVS A  + L+   + F
Sbjct: 219 LGVSPALMEQASRSGGAVSIETGGRKGSLNVSVATGIVLHAWFSQF 264


>gi|69249394|ref|ZP_00604959.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
 gi|68194181|gb|EAN08711.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
          Length = 190

 Score =  113 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 25/199 (12%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M  I   K+ +I  LK  H  K R    +Y                    L G H +  A
Sbjct: 1   MKEIQSAKNPRIKELKKLHKKKYREEKAEY-------------------LLEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
             +   +I +L  T+  +        +        V  + +  +       QG+      
Sbjct: 42  -ASSDAEIKELFVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDL-PTPQGILAVMTL 99

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
               T D        ++LD+V DP N+G ++R+A AF   G++  K  +   S  + +S 
Sbjct: 100 TSEDTPDFSGG---WLLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSM 156

Query: 181 SGALEHIPYIRISNLTDAL 199
            G+  H+P ++  +L D +
Sbjct: 157 QGSNYHLPVLQ-KDLADVI 174


>gi|328868520|gb|EGG16898.1| hypothetical protein DFA_07879 [Dictyostelium fasciculatum]
          Length = 382

 Score =  113 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 66/198 (33%), Gaps = 56/198 (28%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  + ++V + + +P NI A++RS  A     +   ++            + G+ + +  
Sbjct: 107 RTDRFVVVCEDLGNPGNIAAVVRSCDAMGIQHMHIVEKR--IRFDSFGAISKGSEKWVTI 164

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS----------------------------------- 214
            R ++  + +Q +   G++                                         
Sbjct: 165 HRHADTLECVQNLRDNGYKIWSSDLSLGAFPFDKLVFQPNQNIIPPQLDPFYNHLKNQNN 224

Query: 215 ------------------DSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLH 255
                             +  K  +  I N +KIA++ G E  G+  + +  +     L 
Sbjct: 225 QNNQNNQNQNNIFDNIYKEYSKDKDNVILNNEKIAIVFGNEHNGVSDEMKSLSDRRIFLP 284

Query: 256 MPGIIKALNVSNAAAVAL 273
           M G++++ NVS +  + L
Sbjct: 285 MSGLVESFNVSVSVGMLL 302


>gi|281205358|gb|EFA79550.1| hypothetical protein PPL_07601 [Polysphondylium pallidum PN500]
          Length = 405

 Score =  113 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 22/167 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD      N+G+  R+        +      +   +  +AK+A GA   +P+    + 
Sbjct: 231 VLLDDCRSSENVGSFYRTCDGSGLSRLYLCGITATPANLKVAKTALGAEFDVPWSYSPSA 290

Query: 196 TDALQKMHSWGFQTIGL--SSDSKKPLEQEIK--------------------NDKIALIL 233
              ++++   G   IG+  +  S+  LE   K                       I L+ 
Sbjct: 291 LHCVKELKRKGVVIIGIEQTPRSQPLLESIDKLASEIEIVDSQRQQQQQQTRYPPICLLF 350

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G E  GL  +  +    +  L M G  ++LNV+ +  +  Y+    F
Sbjct: 351 GNEVAGLSQEVIDQCDYIYDLEMRGKKRSLNVAVSFGIVAYVVTQRF 397


>gi|225549196|ref|ZP_03770169.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
 gi|225370054|gb|EEG99494.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 94a]
          Length = 218

 Score =  113 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           ++R + L  VL+ +    N  A +R+        +   ++ +  +  +      G+ + I
Sbjct: 29  SLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKN--KHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +   
Sbjct: 87  NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A     + M G  ++ N+S A A+ +Y       K
Sbjct: 147 AADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|307102497|gb|EFN50770.1| hypothetical protein CHLNCDRAFT_142475 [Chlorella variabilis]
          Length = 451

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH---------PFPVKTVPP 98
              LYGV  V AAL    R +  L   +        D                 V     
Sbjct: 288 GDVLYGVSPVLAALQAGRRAVHTLYLQEGMDLAKRKDKGAIQAAKQRAEELGARVLYASK 347

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS----------QLLMVLDHVNDPHNIG 148
             ++ +V     HQG+ L+ +PL    +  +  +           + + LD V DP N G
Sbjct: 348 HDLN-MVADNRPHQGVVLDCSPLEFEPMSELPAAPAAPPPGGRLPVWLCLDEVMDPQNFG 406

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           A LRSA      G++T  R S   SA ++K+++GA+E +P    
Sbjct: 407 AALRSAHFLGVAGVLTCHRNSAPLSAAVSKASAGAMELLPVHSC 450


>gi|216264824|ref|ZP_03436816.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
 gi|223889195|ref|ZP_03623784.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
 gi|215981297|gb|EEC22104.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 156a]
 gi|223885444|gb|EEF56545.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi 64b]
 gi|312148144|gb|ADQ30803.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi JD1]
          Length = 218

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 3/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R + L  VL+ +    N  A +R+        +   ++ +  +  +      G+ + I 
Sbjct: 30  LRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKN--KHTLNPDVTLGSSQWIN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +    
Sbjct: 88  LNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLGA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G  ++ N+S A A+ +Y       K
Sbjct: 148 ADLYVKIPMHGFTQSYNISVAVAIVMYSLLMRLRK 182


>gi|225552193|ref|ZP_03773133.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
 gi|225371191|gb|EEH00621.1| tRNA/rRNA methyltransferase [Borrelia sp. SV1]
          Length = 218

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           + R + L  VL+ +    N  A +R+        +   ++ +  +  +      G+ + I
Sbjct: 29  SFRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVIEKKN--KHTLNPDVTLGSSQWI 86

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  N   A+ ++ S G+  +  S + K   LE    N+K+A+  G E  GL  +   
Sbjct: 87  NLNKYKNAKFAIDRLKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLG 146

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            A     + M G  ++ N+S A A+ +Y       K
Sbjct: 147 AADLYVKIPMYGFTQSYNISVAVAIVMYSLLIRLRK 182


>gi|5281018|emb|CAB45991.1| OBP33pep like protein [Arabidopsis thaliana]
 gi|7268299|emb|CAB78594.1| OBP33pep like protein [Arabidopsis thaliana]
          Length = 278

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 20/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ ++   HN+G + RSA AF    +I   R   +        + G+  HI +    +L
Sbjct: 8   VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFG-----SHGSASHIRFRHFHSL 62

Query: 196 TDALQKMHSW------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +A   +         G +     +D    + +       A +LG EG GL  K  E   
Sbjct: 63  IEARNYLKEEKDCDICGVEI----ADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICD 118

Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
              ++   G    +LNV+ AA++ L+    HF 
Sbjct: 119 FFVYIPQYGCGTASLNVTVAASIVLH----HFG 147


>gi|302535528|ref|ZP_07287870.1| rRNA methylase [Streptomyces sp. C]
 gi|302444423|gb|EFL16239.1| rRNA methylase [Streptomyces sp. C]
          Length = 245

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 89/234 (38%), Gaps = 13/234 (5%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPV-KTVPPQTIDK 103
           + + + L G H +  AL   +  +  +      +  L           V + V P  + +
Sbjct: 14  RDDVVLLDGFHALKHALRFGAEVLDVVADEPERVRELAAGLAPDVEAAVARLVRPGRLKE 73

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSAVAFSCD 160
           ++ +       AL   P       A+        +++LD+  +  N+GA++R A  F   
Sbjct: 74  LLPRVHPTGVAALAVRPGREAGRAALARMPRHAPVVLLDNPRNLGNVGAVVRLAAGFGAT 133

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL 220
           G++T           + ++ +G        R+      L+++         L  + +   
Sbjct: 134 GVVTRGDL-DPWHPNVVRAGAGLHYATTVDRLE-----LEEL--PPGPVYALDPEGEDIR 185

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              + +D + L  G+E  G+ P+ +  A  +  L M   + + N++ + A+ L+
Sbjct: 186 ALVLPDDAL-LAFGSERHGISPELRARADHLVSLPMRPQVSSYNLATSVAMTLF 238


>gi|82541768|ref|XP_725101.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479981|gb|EAA16666.1| RNA methyltransferase, TrmH family, putative [Plasmodium yoelii
           yoelii]
          Length = 227

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            +++ +++ ++    NIG I+RS VAF+   I    R   ++       + G   +I   
Sbjct: 16  KTKMYVIIYNIGKKKNIGNIVRSCVAFNVSEIFVVGR---NKKETSFFGSMGTHGYIRIR 72

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQE--IKNDKIALILGAEGKGLRPKTQET 247
             SN+ +  + ++       G   ++   P+ ++  +KN   A + G EG G+  +  + 
Sbjct: 73  YFSNMIELKEYLNDNNILLYGCEITNQSIPITKQPFVKNKDTAFLFGNEGTGISDQIIKM 132

Query: 248 ATSMAHLHMPG-IIKALNVSNAAAVAL 273
              + ++   G  I +LNVS + A+ L
Sbjct: 133 CDKIIYIPQYGNGIASLNVSVSCAIIL 159


>gi|213052274|ref|ZP_03345152.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 127

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDKI 104
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+ 
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEK 61

Query: 105 VGKEAVHQGLALETAPLLS------PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
               AVHQG+     P         P L A+ +   L++LD V DPHN+GA LRSA A  
Sbjct: 62  -SDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDGVTDPHNLGACLRSADAAG 120

Query: 159 CDGIIT 164
              +I 
Sbjct: 121 VHAVIV 126


>gi|300121517|emb|CBK22036.2| unnamed protein product [Blastocystis hominis]
          Length = 215

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 13/158 (8%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +A       +VL +++  HNIG ++RSA AF    +I        +  ++   + G   H
Sbjct: 7   EAKPKPDGYLVLANISKNHNIGNMVRSACAFGMKEVIVIG-----QPKLMLYGSHGTAHH 61

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           I   +   + +A            G+      + +         A+++G EG G+  K  
Sbjct: 62  IKIRKFGTMEEAKAWFKENNIIVCGVEIVPEAEDVRTHPFRGNTAIMMGNEGSGMNEKQL 121

Query: 246 ETATSMAHLHMP--GIIKALNVSNAAAVALYITQNHFA 281
                  ++     G   +LNV+ AA++ ++    HF+
Sbjct: 122 GMCDHFVYIPQFSQGTA-SLNVNVAASIVMH----HFS 154


>gi|302552750|ref|ZP_07305092.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302470368|gb|EFL33461.1| rRNA methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 248

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 20/242 (8%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNA----LARLDWDANLPHPFPVKTVP 97
           H      + L G H +  A+   +     + A + A       L  D        +  VP
Sbjct: 9   HRLAGSTVLLDGFHALKHAVRFGAEVPVAVTADRAATLALADELAPDVRDALADLLTEVP 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSA 154
            +T    V +       AL   P     L  + ++     ++VLD+  +  N GA++R A
Sbjct: 69  HETYTSFVPRPHPTAVAALAVRPSRESHLARLAHTPRTAPVVVLDNPRNLGNAGAVIRLA 128

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTIGL 212
             F   G++TT          + +  +G        R  +++L                L
Sbjct: 129 AGFGATGVVTTG-TVDPWHPTVVRGGAGLHFATAVERLEVADLPAG---------PLFAL 178

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             +       ++ +D + L  G+E  GL P+ +  A  +  L M   + + N++ + A+ 
Sbjct: 179 DPEGDDIRSTKLPDDAV-LAFGSERTGLSPELRARADHLLSLPMRPQVSSYNLATSVAMT 237

Query: 273 LY 274
           LY
Sbjct: 238 LY 239


>gi|29830900|ref|NP_825534.1| rRNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29608013|dbj|BAC72069.1| putative rRNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 249

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 91/240 (37%), Gaps = 16/240 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVP 97
           H     ++ L G H +  A+   +R    +   + A   L      D        +  VP
Sbjct: 9   HRLADGSVLLDGFHALKHAVRFQARVPVAVTTDRRAALALADELAPDVRETLDALLAEVP 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSA 154
            +T+  +V +       AL   P  +  L+A+  +     ++VLD+  +  N GA++R A
Sbjct: 69  EETLKALVPRPHPTAVAALAVRPSRAANLEALARTPRSAPVVVLDNPRNLGNAGAVIRLA 128

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F   G++TT          + +  +G        R+      + ++         L  
Sbjct: 129 AGFGATGVVTTG-TLDPWHPTVVRGGAGLHFATAVERL-----TVDEL--PPGPVFALDP 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +       ++ +D + L  G+E  GL  + +     +  L M   + + N++ + A+ L+
Sbjct: 181 EGDDIRGLKLPDDAV-LAFGSERTGLSAELRARTDHLVALPMRPQVSSYNLATSVAMTLF 239


>gi|325972741|ref|YP_004248932.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324027979|gb|ADY14738.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 266

 Score =  112 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 13/171 (7%)

Query: 115 ALETAPLLSPTLDAVRNSQ--------LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           AL + P     LD   N           +++LD +  P+N+G+I RSA +F    I   +
Sbjct: 93  ALGSDPSDWDFLDEEGNLDSSQRTIVEHILILDRIRSPYNVGSIFRSADSFGIQKIYLIE 152

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
             +  + +   K++ G  + + Y  +S     L ++ +       L +   +        
Sbjct: 153 GCAAVDHSRTYKTSRGCTKTVEYEILSE-EAMLTRLETIQLPLFALETGGTELDLFSFPP 211

Query: 227 DKIALILGAEGKGLRPKTQETATS---MAHLHMPGIIKALNVSNAAAVALY 274
             IA ++G+E  G+ P       +      +   G   +LNV+ AA + ++
Sbjct: 212 KGIA-VIGSEELGVSPALLGACEASMGRLTIAQAGTKGSLNVAVAAGIMMH 261


>gi|297158833|gb|ADI08545.1| rRNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 258

 Score =  112 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 94/240 (39%), Gaps = 16/240 (6%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT----VP 97
           H +    + L G H +  AL   +     + + K A   L  D        ++     V 
Sbjct: 14  HEAAAGTVLLDGFHALKHALRFGAEVRIAVTSDKAAALALADDLAGDLTAVIEERLVEVS 73

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSA 154
            +T+  +V +       AL         LD +        ++VLD+  +  N+GA++R A
Sbjct: 74  AKTLRDLVPRVHPTGVAALAVRRDRRGNLDELAGPSRSAPVVVLDNPRNLGNVGAVVRLA 133

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F   G++TT            +S +G        R+++       +         L +
Sbjct: 134 AGFGVAGVVTTGDI-DPWHPNAVRSGAGLHFATAVERLTS-----DDL--PPGPLYALDA 185

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +      I +D + L  G+E  G+ P+ ++ AT +  L M   + + N++ + A+AL+
Sbjct: 186 EGEDIRSVVIPDDAL-LAFGSERHGISPEVRKRATRLVALPMRPQVSSYNLATSVAMALF 244


>gi|254874998|ref|ZP_05247708.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254840997|gb|EET19433.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 213

 Score =  112 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 82/216 (37%), Gaps = 22/216 (10%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-PSRKIFQLLATKNALARLD 82
           ++ +++ KK+ S   + +     +   + G+     AL   P ++I  +L T+ A     
Sbjct: 6   QKLYKEIKKLHSSQGRKK----SQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNY 61

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHV 141
                        +  +  + +  +    QG+ +       P L+ +  +   ++VLD +
Sbjct: 62  PLNKK------YIITEKDFEAL-SQTQNPQGVLILA---EKPKLEQLSFDDDFILVLDRI 111

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA--L 199
            DP NIG ILR+A+A     +I         +    ++  GA   + +  I+NL     +
Sbjct: 112 QDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSLKFGYITNLAKLKNI 171

Query: 200 QKMHSWGFQTI----GLSSDSKKPLEQEIKNDKIAL 231
            K+            G+S    K   Q  K    A+
Sbjct: 172 AKLQQRKIWLTTPHQGVSLSPSKCFIQAKKPMTFAI 207


>gi|218282592|ref|ZP_03488830.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]
 gi|218216463|gb|EEC90001.1| hypothetical protein EUBIFOR_01412 [Eubacterium biforme DSM 3989]
          Length = 242

 Score =  112 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 75/235 (31%), Gaps = 11/235 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
            G  +  A L   SR   +L   K       R            V     + I+++    
Sbjct: 6   EGAISCKALLEAGSRNCKKLYIDKKKNTKDTRYLAKIAKSRGCEVVFCSREEINELA-TG 64

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
             H G+ L       P L        L  +D V DP+N+G+I R+  A  CD +I  KR 
Sbjct: 65  KTHGGVLLIAEEKQIPQLIETYVHGFLCYIDGVEDPYNLGSISRTLYASGCDAMILPKRD 124

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
                  + K+++GA E +P   +    + +          +         L        
Sbjct: 125 WSFAEQTILKASAGAYEKLPIYFVDADEELVNYCKKNNLPILCAHRKDAVGLYDYTFESD 184

Query: 229 IALILGAEGKGLRPKTQETATSMAHL----HMPGIIKALNVSNAAAVALYITQNH 279
             L LG   +GL       +     +         + +   ++AAAV  +     
Sbjct: 185 FCLCLGGALRGLSSTITAASKQNIVVEYGRDFRNALDS---ASAAAVFSFEILRQ 236


>gi|209963609|ref|YP_002296524.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
 gi|209957075|gb|ACI97711.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
          Length = 259

 Score =  112 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 95/271 (35%), Gaps = 21/271 (7%)

Query: 15  LKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT 74
            +D +       +  +K   S   + R   +     L G  TV  AL     +   +LA 
Sbjct: 2   RRDRYRLIESPQNPGFKLWDSLLDR-RGLRRHGRFLLAGRKTVPEALMRHPDRFGTVLA- 59

Query: 75  KNALARLDWDANLPHPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNS 132
             A         LP       + P   +++   G         L  +    P +D     
Sbjct: 60  --ADPGQIDALPLPPGIEALLLAPALFERLDVTGTGFP----LLVGSVPAMPAIDLSAPP 113

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             L ++  + DP N+GA++RSA AF    +I  +  +        ++A+ A   +     
Sbjct: 114 VGLELVCALGDPANLGALMRSAAAFGVRTLILLEEAAHPFHPKCLRAAANAQFELSLRTG 173

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                  + +        GL       L        + L+LG EG+GL P   +      
Sbjct: 174 PGW----RGLAGIAGPVFGLDG-GGHDLTDFDWPADVRLVLGEEGQGLPP---DLPVERL 225

Query: 253 HLHMPGIIKALNVSNAAAVALY---ITQNHF 280
            +   G +++LN   AA++ALY    ++ H 
Sbjct: 226 AVPTTGAVESLNAMVAASIALYSHHASRRHR 256


>gi|73952576|ref|XP_536342.2| PREDICTED: similar to TAR RNA binding protein 1 [Canis familiaris]
          Length = 948

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L++V   ++ P N+G + R+   F    +I                +  A + +P + 
Sbjct: 789 SRLIVVASLIDKPTNLGGLCRTCEVFGASALIVDSLQCV-RDKQFQSLSVSAEQWLPLVE 847

Query: 192 I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    L D LQ+  + G+  IG+   +K   L Q    ++  L+LG E +G+     +  
Sbjct: 848 VKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLTQYSFPERSLLLLGNEREGIPANLIQEL 907

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +   GII++LNV  + A+ ++     
Sbjct: 908 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 938


>gi|122936696|dbj|BAF45162.1| putative RNA methyltransferase [uncultured bacterium]
          Length = 220

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 71/192 (36%), Gaps = 30/192 (15%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-------- 170
           A L +  +   R   L+ V++  ++  NIG ++R+  A   + +      +         
Sbjct: 10  ARLRADEIKDYRCKNLIAVIEDPSNIKNIGTVIRNVNALGVEKVYVVDPRNALPDDWQEM 69

Query: 171 ----------------SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
                           SE   L+K++  A++     R  +    ++ +    F +I  S 
Sbjct: 70  REKRSLSKTSVSAVKWSEKRSLSKTSVSAVKWSFVKRFDSTEACIEHLEENRFVSIVTSP 129

Query: 215 DSK----KPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             K      L +    +  K+A+  G E +G+     E +     + M G+I++LN+   
Sbjct: 130 HIKGKKNAILGEVDYTEHYKLAVWFGNEARGISDLAVEHSEMCVSIPMFGMIESLNLGTT 189

Query: 269 AAVALYITQNHF 280
           + + LY      
Sbjct: 190 SGIVLYEVTKQR 201


>gi|194206115|ref|XP_001916608.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Equus caballus]
          Length = 1468

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++    +   +       +  A + +P + 
Sbjct: 1309 SRLIVVASLIDKPTNLGGLCRTCEVFGALVLVVGSLHCVKDKQ-FQHLSVSAEQWLPLVE 1367

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 1368 VKPPQLIDYLQQKKAEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1427

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
                 +   GII++LNV  + A+ ++  T+    K
Sbjct: 1428 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLK 1462


>gi|72162085|ref|YP_289742.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
 gi|71915817|gb|AAZ55719.1| probable tRNA/rRNA methyltransferase [Thermobifida fusca YX]
          Length = 184

 Score =  112 bits (280), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++++ ++++ V  P N+G+ILR+A  F  D +  T      E   + K+A G    + + 
Sbjct: 22  HNRISLIVESVTQPFNLGSILRTAATFGVDTLWLTGNAVTPEHRQVHKTALGTQTKVRWE 81

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + +   +A+    + G++ + L       PL +      + L +GAE  G  P       
Sbjct: 82  KTATSAEAVAAARAAGYRVVALELAHGAVPLHRAPLTGDVCLAVGAEDHGCSPALLAAVD 141

Query: 250 SMAHLHMPGIIKALN 264
           ++ ++   G + +LN
Sbjct: 142 AVTYIPQTGRVGSLN 156


>gi|223996685|ref|XP_002288016.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977132|gb|EED95459.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 364

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 103/276 (37%), Gaps = 37/276 (13%)

Query: 34  QSFNQKSRHTSQPENLF-LYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFP 92
           +S  ++ +   +   L  + G      AL + S     +  T    AR    A   +   
Sbjct: 93  ESREERKKILHEQLQLLGIDG-----DALADAS--FRSVATTDGFDARFGKSAIKAYRTY 145

Query: 93  VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
           +   P +    ++ KE  H+    +            +   L++VLD++    N+G+I R
Sbjct: 146 IDPRPSKM--AVIAKEDRHRSHEADWVRHTDAEESIRQTFPLILVLDNLRSAANVGSIFR 203

Query: 153 SAVAFSCDGIITTKRY---SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW--GF 207
           SA A  C  I+TT        + +  LAKSA GA   +     +    AL+ + +    F
Sbjct: 204 SADACGCLEIVTTGITPRPGANGAEKLAKSALGAERVVATRHFATTKQALEYLRNKRPNF 263

Query: 208 QTIG----------------------LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             +G                       ++DS    ++ + +  +AL LG E  G+     
Sbjct: 264 MLVGMETTERSKVYTELQYPGSKDSLTTTDSISIEDEVLTSPGVALFLGNEVSGVDTDIM 323

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               ++  + M G   +LNV++ A V +Y     + 
Sbjct: 324 PLLDAVVEIPMFGKKNSLNVASCAPVVMYEVLRQWG 359


>gi|170047080|ref|XP_001851065.1| Rnmtl1 protein [Culex quinquefasciatus]
 gi|167869628|gb|EDS33011.1| Rnmtl1 protein [Culex quinquefasciatus]
          Length = 446

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 108/303 (35%), Gaps = 34/303 (11%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           +K S+   S +   Y KL+++   Y  +    +  +       + L G   +   +    
Sbjct: 149 EKSSKAFDSKRKLEYLKLKQSDSLYGDLSLLVKSRKRRELKCKMVLEGKRLIKDGIEAGL 208

Query: 66  RKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPT 125
                +    N + +LD D  +     +  V    + +          + +   P     
Sbjct: 209 STDIIVF---NDVTKLD-DLKIDKSVNLVQVERNVMQEWSSVTTCPGLIGIFRKPKDMNK 264

Query: 126 LDAVRNSQLL-----MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +  ++N  L+     +V D++ +P+N+G+I+RS+ A     I+  K  +        + A
Sbjct: 265 I-VIQNRSLIPLPITVVCDNIREPNNLGSIIRSSAAIPTGRIVLLKGCTCPWDPKCLRGA 323

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--------LEQEIKND--KIA 230
           +GA   IP      + + L+++       +   + + +          +     +   + 
Sbjct: 324 TGAQFRIPISGPVAMDE-LEELIPPNATFLVADNKTGRIDGKFSFCRYDAANYREMQHVV 382

Query: 231 LILGAEGKGLRPKTQE-------------TATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L +G E  G+    +              +     H+ +   I++LN ++A +V LY  +
Sbjct: 383 LFIGGETLGISNDVRRFITGFTEKSLNDTSVCYNVHIPLANGIESLNTASALSVLLYEIK 442

Query: 278 NHF 280
              
Sbjct: 443 RQL 445


>gi|297570796|ref|YP_003696570.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931143|gb|ADH91951.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 226

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 121 LLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
               ++DA+R+      ++L + ++++    NIG+I+R+  AF+  G+    +       
Sbjct: 51  YRYWSVDAIRDDLAKTSTKLHIAIENLEHDLNIGSIVRTGNAFNVSGVHIVGK-----KK 105

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
              + A     ++     + ++  ++      +Q + +   +   P+ +    ++  LI 
Sbjct: 106 WNRRGALVTDRYLNVHHHAEVSSLVEWARENDYQLVAVDNMEGSTPIAETALPERAVLIF 165

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           G E  GL  +    A S  ++   G  +++NV+ AAA+++++
Sbjct: 166 GQESNGLSAELLAAADSAVYIPQYGSTRSMNVAAAAAISMHM 207


>gi|301787005|ref|XP_002928920.1| PREDICTED: probable methyltransferase TARBP1-like [Ailuropoda
            melanoleuca]
          Length = 1548

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       ++       +  A + +P + 
Sbjct: 1389 SRLIVVASLIDKPTNVGGLCRTCEVFGASALVVGSLQCVTDKQFQG-LSVSAEQWLPLVE 1447

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    ++  L+LG E +G+     +  
Sbjct: 1448 VKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLSQYSFPERSLLLLGNEREGIPANLIQQL 1507

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1508 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1538


>gi|281342333|gb|EFB17917.1| hypothetical protein PANDA_018980 [Ailuropoda melanoleuca]
          Length = 1374

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       ++       +  A + +P + 
Sbjct: 1216 SRLIVVASLIDKPTNVGGLCRTCEVFGASALVVGSLQCVTDKQFQG-LSVSAEQWLPLVE 1274

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    ++  L+LG E +G+     +  
Sbjct: 1275 VKPPQLIDFLQQKKAEGYTVIGVEQTAKSVDLSQYSFPERSLLLLGNEREGIPANLIQQL 1334

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1335 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1365


>gi|325475311|gb|EGC78496.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 262

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +  + +  P NIG+I R+A +F  + +  +      +S    ++A G  E++P+ R 
Sbjct: 119 GVYVYAEDIRTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWERA 178

Query: 193 S--NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +L D            I L +     + +     K  +++G+E  G+ P+  + A  
Sbjct: 179 DLGSLPD---------LPLIVLET-GGTDISKFDFPKKGIVVIGSEELGVSPEAVKKAQG 228

Query: 251 MA-HLHMPGIIKALNVSNAAAVAL 273
               + M GI  ++NVS A  + +
Sbjct: 229 RVITIPMYGIKASINVSVAFGICM 252


>gi|329935710|ref|ZP_08285515.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329304801|gb|EGG48674.1| rRNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 266

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 20/242 (8%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVP 97
           H      + L G H +  AL   +R    L   + A   L      D        +  VP
Sbjct: 29  HREAGGAVLLDGFHALKHALRFGARVPVALATDRAAALALAEELAPDVREGLAALLTEVP 88

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSA 154
             +   ++ +       AL   P     L A+ ++     ++VLD+  +  N GA++R A
Sbjct: 89  ESSYRALLARPHPTGVAALAGRPAREANLRALAHAPRRAPVVVLDNPRNLGNAGAVIRLA 148

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGL 212
             F   G++TT          + +  +G        R+   +L +              L
Sbjct: 149 AGFGATGVVTTG-TLDPWHPTVVRGGAGLHFATAVERMDVADLPEG---------PVYAL 198

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             + +      + ++ + L  G+E  GL P+ +  A  +  L M   + + N++ +  +A
Sbjct: 199 DPEGEDIRRVRLPDEAL-LAFGSERSGLSPELRARADRLVALPMRPQVSSYNLATSVGMA 257

Query: 273 LY 274
           L+
Sbjct: 258 LF 259


>gi|15234624|ref|NP_193287.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|26449903|dbj|BAC42073.1| OBP33pep like protein [Arabidopsis thaliana]
 gi|28827336|gb|AAO50512.1| putative OBP33pep protein [Arabidopsis thaliana]
 gi|332658215|gb|AEE83615.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
          Length = 222

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 20/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ ++   HN+G + RSA AF    +I   R   +        + G+  HI +    +L
Sbjct: 8   VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFG-----SHGSASHIRFRHFHSL 62

Query: 196 TDALQKMHSW------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +A   +         G +     +D    + +       A +LG EG GL  K  E   
Sbjct: 63  IEARNYLKEEKDCDICGVEI----ADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICD 118

Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
              ++   G    +LNV+ AA++ L+    HF 
Sbjct: 119 FFVYIPQYGCGTASLNVTVAASIVLH----HFG 147


>gi|221052955|ref|XP_002257852.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193807684|emb|CAQ38388.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 320

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 99/279 (35%), Gaps = 74/279 (26%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLA---------TKNALARLDWDANLPHPFPV 93
            ++    ++YGV++VS+ L    R I  +L          T+    +  +D       P+
Sbjct: 72  QAENNVDYVYGVNSVSSVLVKNERTIHSVLVNEHIRLNKKTRKQAYQYIFDTIKKRNIPI 131

Query: 94  KTVPPQTIDKIVGKEAVHQGLALET--------APLLSPTLDAVRNSQLLMVLDHVNDPH 145
           +T   + +D +VG    H  + +ET           L       + S + + L  ++ P 
Sbjct: 132 RTTSKKKMDDLVG-GFPHNDIIMETTYRTMKKAKHFLKDYPQKEKRSNIYICLHDIDTP- 189

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
                                         +  S+ G  E + +  ++N+   +  + S 
Sbjct: 190 ------------------------------VLHSSVGTSEFLDFFHVNNMLTFMDDLKSC 219

Query: 206 GFQTIGLSSDSKKPLE----------QEIKNDKIALILGAEGKGLRPKTQETATSMAHL- 254
           GF+ +         +           Q  KN+KI +ILG E KGL  +  E +    ++ 
Sbjct: 220 GFKILSTCCHPNDSIPNDRLQELANVQMNKNEKIFIILGNETKGLSKEILEKSDICIYIN 279

Query: 255 -------HMP-----GII--KALNVSNAAAVALYITQNH 279
                    P     G     +LNV+NA A+ L+   +H
Sbjct: 280 GHRTEVAPTPDLNHNGEFTLDSLNVNNACAILLHHFTSH 318


>gi|297804698|ref|XP_002870233.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316069|gb|EFH46492.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 222

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 20/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ ++   HN+G + RSA AF    +I   R   +        + G+  HI +    +L
Sbjct: 8   VVVHNIAKRHNVGTLARSATAFGVTELILVGRRDFNAFG-----SHGSASHIRFRHFHSL 62

Query: 196 TDALQKMHSW------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +A   +         G +     +D    + +       A +LG EG GL  K  E   
Sbjct: 63  IEARTYLKEEKDCDICGVEI----ADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICD 118

Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
              ++   G    +LNV+ AA++ L+    HF 
Sbjct: 119 FFVYIPQYGCGTASLNVTVAASIVLH----HFG 147


>gi|13507481|gb|AAK28596.1|AF349097_2 hypothetical protein [uncultured bacterium]
          Length = 207

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 81/183 (44%), Gaps = 17/183 (9%)

Query: 115 ALETAPLLSPTLDAVRNSQ---LLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYS 169
           A ++ P L    + V++++   L+ V+++  D  NIG I+R+  A   +   +I++K   
Sbjct: 4   AKKSKPTLRARANKVKHARCKNLIAVIENPEDIRNIGTIIRNVNALGVEKAYVISSKATL 63

Query: 170 PS------ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK----KP 219
           P       E + L   ++ A++     +  +    L  +   GF ++  S  +K      
Sbjct: 64  PDNWQDMREKSKLNAISASAVKWSFVKKFKDSESCLDHLEKNGFVSVVTSPHTKGRKNVV 123

Query: 220 LEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L +       K+A+  G EG G+     E +    ++ M GI+++LN+  ++ + LY   
Sbjct: 124 LHEADYTKYTKLAVWFGTEGTGISQVALERSELCVNIPMVGIVESLNLGTSSGIVLYEIT 183

Query: 278 NHF 280
              
Sbjct: 184 KQR 186


>gi|42525569|ref|NP_970667.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41815580|gb|AAS10548.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 262

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 9/142 (6%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +  + +  P NIG+I R+A +F  + +  +      +S    ++A G  E++P+ R 
Sbjct: 119 GVYVYAEDIRTPFNIGSIFRTAESFGVEKVFLSHDCVSPDSPKAKRTAMGCTEYLPWERA 178

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                 L+ +       +         + +     K  +++G+E  G+ P+  + A    
Sbjct: 179 D-----LESLPDLPLIVLET---GGTDISKFEFPKKGIVVIGSEELGVSPEAVKKAQGRV 230

Query: 253 -HLHMPGIIKALNVSNAAAVAL 273
             + M GI  ++NVS A  + +
Sbjct: 231 ITIPMYGIKASINVSVAFGICM 252


>gi|115439859|ref|NP_001044209.1| Os01g0742000 [Oryza sativa Japonica Group]
 gi|113533740|dbj|BAF06123.1| Os01g0742000 [Oryza sativa Japonica Group]
          Length = 163

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 35/151 (23%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPL 220
           ++   + S   S V++K+++G+LE I  +   N+   L      G++ +G   +    PL
Sbjct: 1   VVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPL 60

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH------------------------- 255
            + +  +   L+LG+EG GLRP  + + T +  +                          
Sbjct: 61  SEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSFVGADTDTDGGEEGDNYSG 120

Query: 256 ---MPG--IIKALNVSNAAAVALYITQNHFA 281
              M     +++LNVS AA V LY    H A
Sbjct: 121 NQDMKSFLAVESLNVSVAAGVLLY----HLA 147


>gi|170780953|ref|YP_001709285.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155521|emb|CAQ00633.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 218

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD  R+    + +++     NIG+I+RSA AF+ D +    R          + A   
Sbjct: 63  ADLDQHRH-PFHVAIENWQHDMNIGSIVRSANAFAADTVHIVGRR-----RWNKRGAMVT 116

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             +   +  + + D ++     G   I +   D    LE     ++  L+ G EG GL  
Sbjct: 117 DRYQHVVHHATIADLVEWARGEGLPIIAIDNVDGSVLLETTRLPERCVLVFGQEGPGLSD 176

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
           +    A     +   G  +++N S AAAV ++     H +
Sbjct: 177 EAVAAADMTVAISQFGSTRSINASAAAAVVMHAWVMQHVS 216


>gi|297491399|ref|XP_002698855.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Bos taurus]
 gi|296472224|gb|DAA14339.1| TAR (HIV-1) RNA binding protein 1 [Bos taurus]
          Length = 890

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L++V   ++ P N+G + R+   F    ++                +  A + +P + 
Sbjct: 731 SRLIVVASLIDKPTNLGGLCRTCEVFGAAALVMGSLQCV-RDKQFQHLSVSAEQWLPLVE 789

Query: 192 I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    L D LQ+  + G+  +G+   +K   L +    +K  L+LG E +G+     +  
Sbjct: 790 VKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQL 849

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
                +   GII++LNV  + A+ ++  T+    K
Sbjct: 850 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLK 884


>gi|194679306|ref|XP_614988.4| PREDICTED: TAR (HIV-1) RNA binding protein 1, partial [Bos taurus]
          Length = 1407

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++                +  A + +P + 
Sbjct: 1248 SRLIVVASLIDKPTNLGGLCRTCEVFGAAALVMGSLQCV-RDKQFQHLSVSAEQWLPLVE 1306

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  +G+   +K   L +    +K  L+LG E +G+     +  
Sbjct: 1307 VKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQL 1366

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
                 +   GII++LNV  + A+ ++  T+    K
Sbjct: 1367 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLK 1401


>gi|148271834|ref|YP_001221395.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829764|emb|CAN00682.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 219

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD  R+    + +++     NIG+I+RSA AF+ D +    R          + A   
Sbjct: 64  ADLDQHRH-PFHVAIENWQHDMNIGSIVRSANAFAADTVHIVGRR-----RWNKRGAMVT 117

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             +   +  + + D ++     G   I +   D    LE     ++  L+ G EG GL  
Sbjct: 118 DRYQHVVHHATIDDLVEWARGEGLPIIAIDNVDGSVLLETTRLPERCVLVFGQEGPGLSD 177

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
           +    A     +   G  +++N S AAAV ++     H +
Sbjct: 178 EAVAAADMTVAISQFGSTRSINASAAAAVVMHAWVMQHVS 217


>gi|319948186|ref|ZP_08022346.1| putative tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319438170|gb|EFV93130.1| putative tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 133

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A A   D +  T+     E+    +S++G++ H+P +R     D + + H  G Q     
Sbjct: 2   ADALGADAVWLTEGAVDPENPKAVRSSAGSVFHLPVVRGIAEDDIVGRAHRAGLQVAVAD 61

Query: 214 SDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
           +  +  +E   ++     A I G E  G+       A     + + G  ++LN+  AA++
Sbjct: 62  AGGEVDVERADDVLAAPTAWIFGNEAHGVPADLAAAADLRVRIPIRGRAESLNIVTAASI 121

Query: 272 ALYITQN 278
            L+ +  
Sbjct: 122 CLHTSSR 128


>gi|203283978|ref|YP_002221718.1| spoU protein [Borrelia duttonii Ly]
 gi|203287521|ref|YP_002222536.1| spoU protein [Borrelia recurrentis A1]
 gi|201083421|gb|ACH93012.1| spoU protein [Borrelia duttonii Ly]
 gi|201084741|gb|ACH94315.1| spoU protein [Borrelia recurrentis A1]
          Length = 218

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 5/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS-ESAVLAKSASGALEHIP 188
           R + L +VL+ +    N  A +R+        I   +  +    +  +     GA + I 
Sbjct: 31  RTNYLTLVLEDIFQSQNASATMRTIEILGLSNIHIIETNNKYTLNPGVV---LGASKWIG 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +   +  A + + + G++ +  S D++   LE    + K+A+  G E  GL     + 
Sbjct: 88  INKYKCVKVAFEHLKANGYKIVATSLDNEAISLEDFPIDTKMAVFFGTELTGLSHTILQN 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     + M G  ++ N+S A A+  Y   N  
Sbjct: 148 ADLHLKIPMYGFTQSYNLSVAVAIVFYSLINRL 180


>gi|109019959|ref|XP_001102931.1| PREDICTED: probable methyltransferase TARBP1-like [Macaca mulatta]
          Length = 1623

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+       +  A + +P ++
Sbjct: 1464 SRLIVVASLIDKPTNLGGLCRTCEVFGASALVVGSLQCISDKQ-FQHLSVSAEQWLPLVQ 1522

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   +L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 1523 VKPPHLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1582

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1583 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1613


>gi|300934218|ref|ZP_07149474.1| putative rRNA methylase [Corynebacterium resistens DSM 45100]
          Length = 236

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++  +  NIG ++R+A AF+ D +    R          + A     + 
Sbjct: 81  DTRRHSLHIAIENFENDSNIGTVVRTANAFAVDTVHIVGR-----KRWNRRGAMVTDRYQ 135

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + D L+         + +  +    PLE      +  L+ G EG G+ P+ Q 
Sbjct: 136 HLEHHPTVADVLEYARKHDLTVVAVDNTPGSVPLETADLPKRCLLLFGQEGPGVTPEAQA 195

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            AT    +   G  +++N   AA +A++   + H
Sbjct: 196 GATQTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 229


>gi|195644564|gb|ACG41750.1| hypothetical protein [Zea mays]
          Length = 163

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203
           HN+G + RSA AF    ++   R   S        + GA  H+ +    +L  A   +  
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDVSAFG-----SHGATSHLRFRHFVSLALARAYLKD 72

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIK 261
             G    G+  +D  +P+         A + G EG GL  K  E      ++    G   
Sbjct: 73  ERGCDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTA 132

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ AA++ L+    HF 
Sbjct: 133 SLNVTVAASIVLH----HFG 148


>gi|325001131|ref|ZP_08122243.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia sp. P1]
          Length = 228

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R     + ++++   HNIG ++R+A AF   G+    R          + A     ++
Sbjct: 73  ARRAHPFHVAIENLGHDHNIGTVVRTANAFGAGGVHIVGRR-----RWNRRGAMVTDRYL 127

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                      +    + G   + +        LE+        L+ GAEG GL P+ +E
Sbjct: 128 SLHHHPGAAGLVAHARAAGLALVAVDNLPGAVRLEETALPRDCVLVFGAEGPGLSPELRE 187

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA + ++   + H
Sbjct: 188 AADLAVSIAQFGSTRSINAGVAAGIVMHAWVREH 221


>gi|311271147|ref|XP_001927654.2| PREDICTED: probable methyltransferase TARBP1 isoform 1 [Sus scrofa]
          Length = 1628

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++ +              +  A + +P + 
Sbjct: 1469 SRLVVVASLIDKPTNLGGLCRTCEVFGASALVVSSLQC-IRDKQFQHLSVSAEQWLPLVE 1527

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  +G+   ++   L Q    +K  L+LG E +G+     +  
Sbjct: 1528 VKPPQLIDYLQEKKAEGYTIVGVEQTARSVDLTQFCFPEKSLLLLGNEREGIPANLIQQL 1587

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1588 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1618


>gi|88802324|ref|ZP_01117851.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
 gi|88781182|gb|EAR12360.1| putative tRNA methyltransferase [Polaribacter irgensii 23-P]
          Length = 168

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 5/155 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              + +V D +  P NIG   R + +F    I   +    +E+ ++ K+A   +    + 
Sbjct: 15  QFPITIVCDAIRTPENIGMCFRISESFGVSKIYFHEASPSTENKIVKKTARNTIHQTEHE 74

Query: 191 RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--KNDKIALILGAEGKGLRPKTQET 247
             SN  + +  + + G + IG+  +D    ++     KN+KI L+LG+E  G+  +   +
Sbjct: 75  TYSNFKELITTLRAQGNKIIGIEITDKSINIQDFDFQKNEKIVLLLGSERNGV--ENINS 132

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G   ++NV ++ A+ LY   +   K
Sbjct: 133 ADETIAIPMYGKNSSMNVIHSLAITLYEATSQLLK 167


>gi|195628230|gb|ACG35945.1| hypothetical protein [Zea mays]
          Length = 163

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203
           HN+G + RSA AF    ++   R   S        + GA  H+ +    +L  A   +  
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDVSAFG-----SHGATSHLRFRHFVSLALARAYLKD 72

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIK 261
             G    G+  +D  +P+         A + G EG GL  K  E      ++    G   
Sbjct: 73  ERGCDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTA 132

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ AA++ L+    HF 
Sbjct: 133 SLNVTVAASIVLH----HFG 148


>gi|47228934|emb|CAG09449.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1600

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 5/173 (2%)

Query: 112  QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            Q   L+  P         ++  L++V   ++ P N+G + R+   F    ++    +   
Sbjct: 1426 QEAELQLVPQQRAVRLGKQHGALVVVASLIDKPTNLGGLCRTCEIFGASVLVLDSLHHV- 1484

Query: 172  ESAVLAKSASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDK 228
                    +  +   +P + +    LT+ LQ   + G+  +G+   +  + L+     +K
Sbjct: 1485 RDKHFQSLSVSSELWLPLMEVKPVQLTEFLQVKKNEGYCIVGVEQTANSRSLQDYQFPEK 1544

Query: 229  IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
              LILG E +G+     +       +   GII++LNV  +AA+ ++  T+ H 
Sbjct: 1545 TLLILGNEREGIPANLLQMLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQHL 1597


>gi|157120535|ref|XP_001653652.1| hypothetical protein AaeL_AAEL009023 [Aedes aegypti]
 gi|108874927|gb|EAT39152.1| conserved hypothetical protein [Aedes aegypti]
          Length = 462

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 112/306 (36%), Gaps = 36/306 (11%)

Query: 7   KKSEKIFSLKDSH----YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           K+ EK   + D H    Y KL +N   +  MQ      +       L + G   ++ A++
Sbjct: 159 KRKEKSLEITDKHSGIKYLKLLKNDPMFGDMQLLMTSRKRRELKSKLVVEGKRLINDAID 218

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLL 122
                +  ++ +++    LD          +  +P   + +          + +   P  
Sbjct: 219 -AGLLLETVIFSESC--HLDDIRAELATLKLIQLPNHVLQEWSDLVTSPGVIGIFQKPSD 275

Query: 123 SPTLDAVRNS-----QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              +  +RN       + +V D+V +P+N+G+ILRS  +   D +I  K  +        
Sbjct: 276 MSKI-VIRNRTAESLPITVVCDNVREPNNLGSILRSCASIPVDRVILLKGCTHPWDPKCL 334

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----------D 227
           +  +GA      +    + D L ++       +   + S++  E  + +          +
Sbjct: 335 RGGAGAHFRTSVVGPV-VMDELAELLPSNPTFLVADNRSERDEESFVLSRYDKANYFDME 393

Query: 228 KIALILGAEGKGLRPKTQE------------TATSMAHLHMPGIIKALNVSNAAAVALYI 275
            + L++G E  G+    +              +  + H+ +   +++LN ++A +V L  
Sbjct: 394 HMVLVIGGETHGVSSDVRRYIRQLQEDSNVGNSLYLVHIPLENGVESLNTASAISVILCE 453

Query: 276 TQNHFA 281
            +    
Sbjct: 454 IRRQLN 459


>gi|237843303|ref|XP_002370949.1| RNA methyltransferase, putative [Toxoplasma gondii ME49]
 gi|211968613|gb|EEB03809.1| RNA methyltransferase, putative [Toxoplasma gondii ME49]
 gi|221481851|gb|EEE20221.1| RNA methyltransferase, putative [Toxoplasma gondii GT1]
 gi|221502350|gb|EEE28083.1| RNA methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 840

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 5/153 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++ ++ L  V    N+G ++R+A A   DG+      +   +  + + + G   ++P+  
Sbjct: 654 AKCILALGGVRYVWNVGILVRTAAALGFDGVYYVDGTADPFNWKVMEISRGLHYNLPHF- 712

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETA 248
             ++ + L+         I   +  ++P        K+  I  ILG E  GL     +  
Sbjct: 713 HGSVENLLRMCEESDLLPIAADTTGERPEAFQGAVTKHRGICCILGNESHGLSELILQRC 772

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                L M  ++ +LNV  A  + +Y  +   A
Sbjct: 773 -RRVALPMSSLLDSLNVGIAGGIVMYEMKKILA 804


>gi|326673098|ref|XP_001921874.3| PREDICTED: probable methyltransferase TARBP1 [Danio rerio]
          Length = 1083

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 117  ETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
            E  P L     A+R     S LL+V   ++ P N+G + R+   F    ++       ++
Sbjct: 908  EQEPELMAQQRALRLGKLTSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVND 967

Query: 173  SAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKI 229
                A  +  +   +P + +  + L+D LQ   S G+  IG+  + + + L+     +K 
Sbjct: 968  KQFQA-LSVSSELWLPMMEVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKS 1026

Query: 230  ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             L+LG E +G+     +       +   G+ ++LNV  +AA+ ++     
Sbjct: 1027 LLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 1076


>gi|220678250|emb|CAX14273.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
           protein 1 (TARBP1) [Danio rerio]
          Length = 580

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 117 ETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           E  P L     A+R     S LL+V   ++ P N+G + R+   F    ++       ++
Sbjct: 405 EQEPELMAQQRALRLGKLTSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVND 464

Query: 173 SAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKI 229
               A  +  +   +P + +  + L+D LQ   S G+  IG+  + + + L+     +K 
Sbjct: 465 KQFQA-LSVSSELWLPMMEVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKS 523

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG E +G+     +       +   G+ ++LNV  +AA+ ++     
Sbjct: 524 LLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 573


>gi|220678249|emb|CAX14272.1| novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding
           protein 1 (TARBP1) [Danio rerio]
          Length = 191

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 117 ETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           E  P L     A+R     S LL+V   ++ P N+G + R+   F    ++       ++
Sbjct: 16  EQEPELMAQQRALRLGKLTSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVND 75

Query: 173 SAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKI 229
               A  +  +   +P + +  + L+D LQ   S G+  IG+  + + + L+     +K 
Sbjct: 76  KQFQA-LSVSSELWLPMMEVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKS 134

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG E +G+     +       +   G+ ++LNV  +AA+ ++     
Sbjct: 135 LLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 184


>gi|292620337|ref|XP_002664256.1| PREDICTED: probable methyltransferase TARBP1-like [Danio rerio]
          Length = 241

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 117 ETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           E  P L     A+R     S LL+V   ++ P N+G + R+   F    ++       ++
Sbjct: 66  EQEPELMAQQRALRLGKLTSSLLVVASLIDKPTNLGGLCRTCEIFGAKALVLDSLRHVND 125

Query: 173 SAVLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKI 229
               A  +  +   +P + +  + L+D LQ   S G+  IG+  + + + L+     +K 
Sbjct: 126 KQFQA-LSVSSELWLPMMEVKPAELSDFLQLKKSEGYWVIGVEQTSNSQSLQDYTFPEKS 184

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG E +G+     +       +   G+ ++LNV  +AA+ ++     
Sbjct: 185 LLLLGNEREGIPANVLQLLDVCVEIPQFGVTRSLNVHVSAALLVWEYTRQ 234


>gi|330886610|gb|EGH20271.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 75

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +++  L Q+       +I+GAEGKG+R  T+E    +  L M G + +LNVS A  V L+
Sbjct: 1   EAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLF 60

Query: 275 ITQNHFA 281
                 +
Sbjct: 61  EALRQRS 67


>gi|225432460|ref|XP_002278797.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147777374|emb|CAN73835.1| hypothetical protein VITISV_043470 [Vitis vinifera]
 gi|297736948|emb|CBI26149.3| unnamed protein product [Vitis vinifera]
          Length = 217

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 11/148 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ ++   HN+G + RSA A     +I   R   +     +  + G+  H+ +    +L
Sbjct: 7   VVVHNIAKRHNVGTLARSASALGVSELILVGRRDFN-----SFGSHGSTSHLRFRHFHSL 61

Query: 196 TDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            DA   +        G+  +D+   + Q       A +LG EG GL  K  E      ++
Sbjct: 62  LDARHFLKEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSVKECEICDFFVYI 121

Query: 255 HMP-GIIKALNVSNAAAVALYITQNHFA 281
               G   +LNV+ AA++ L+    HF 
Sbjct: 122 PQYGGGTASLNVTVAASIVLH----HFG 145


>gi|224014732|ref|XP_002297028.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968408|gb|EED86756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 542

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 30/185 (16%)

Query: 118 TAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             P     +D V   R      + ++ ++P N+ A LR+  +F    +     +S S   
Sbjct: 286 VQPRRLERIDEVLNQRTRHTRFLFENPSNPSNVWACLRTLDSFGIQYVDVI-IHSDSYQG 344

Query: 175 VLA-------KSASGALEHIPYIRISNLTDALQKMHSW-GFQTIGLSSD----------- 215
             A       ++A G+   +   +  ++  A+  +             +           
Sbjct: 345 KAAVNQKRGMRTAMGSACWMTLRQFGSIEAAITSLREEEDCLIYASDLNPASMDVRDLNW 404

Query: 216 -------SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                       +Q+ +   I +++G E +G+  K +E A    +L M G  ++ N+S A
Sbjct: 405 DVDYSSGGNADSDQQKEQRPICIVMGNEERGISDKMRELADETFYLPMCGFAESFNLSVA 464

Query: 269 AAVAL 273
            A+ L
Sbjct: 465 TAITL 469


>gi|333025681|ref|ZP_08453745.1| putative rRNA methylase [Streptomyces sp. Tu6071]
 gi|332745533|gb|EGJ75974.1| putative rRNA methylase [Streptomyces sp. Tu6071]
          Length = 266

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 17/231 (7%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP-----PQTIDK 103
           + L G H +  AL   +     L   ++  A L     L      +        P  + +
Sbjct: 39  VLLDGFHALKHALRFGADVP--LAVAEDRAAVLALADELAPDLAPRLAELLVPVPPALYR 96

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            +       G+A        P     R S L +VLD   +  N GA++R A  F   G++
Sbjct: 97  SLVPRPHPTGVAALAGRPPEPGFAGPRTSPL-LVLDEPRNLGNAGAVIRLAAGFGASGVV 155

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
           TT          + ++ +G     P  R      A+ ++ +         ++ +      
Sbjct: 156 TTGDL-DPWHPAVVRAGAGLHFATPVAR-----RAVPELPAGPLW--AFDAEGEDLRGLR 207

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + +D + L  G+E  GL    +E A  +  L M   + + N++ +  +ALY
Sbjct: 208 VPDDAL-LAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALY 257


>gi|309806115|ref|ZP_07700134.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
 gi|308167470|gb|EFO69630.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
          Length = 114

 Score =  109 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 2/106 (1%)

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDK 228
              ++ + +S  G+  H+  ++ +++   L    + G        D   + L       +
Sbjct: 7   DLYNSKVQRSMQGSQFHLQIVQ-TDIEQVLLDFKNNGLPLYASVLDKDAEILYNCKAVSQ 65

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + LI+G E  G+  + Q       ++ + G  ++LN + AA + +Y
Sbjct: 66  LGLIIGNEAHGVSRQVQLECDHKIYIPIKGKAESLNAAVAAGIMIY 111


>gi|328949341|ref|YP_004366678.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328449665|gb|AEB15381.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 270

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 10/140 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +  + +  P NIG+I R+A A  C+ +  +   +    +   +S  G +E + Y R S  
Sbjct: 130 VYAEDIRSPFNIGSIFRTAEAMGCENVFISPNCTDPNQSRALRSGMGCIETLGYKRCS-- 187

Query: 196 TDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAH 253
              L+++        +        P+ +     +  +I+G+E  G+ P+  + A      
Sbjct: 188 ---LEELPQDKPVFVLET---GGTPITEFSFPKEGIVIIGSEELGVSPEALKRADYGRVS 241

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           + M G+  +LNV  A  + +
Sbjct: 242 IPMTGLKASLNVGVAFGILM 261


>gi|226492595|ref|NP_001151868.1| LOC100285504 [Zea mays]
 gi|195650445|gb|ACG44690.1| trmH family tRNA/rRNA methyltransferase [Zea mays]
 gi|238006410|gb|ACR34240.1| unknown [Zea mays]
          Length = 220

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203
           HN+G + RSA AF    ++   R   S        + GA  H+ +    +L  A   +  
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDVSAFG-----SHGATSHLRFRHFVSLALARAYLKD 72

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIK 261
             G    G+  +D  +P+         A + G EG GL  K  E      ++    G   
Sbjct: 73  ERGCDICGVEITDDAQPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTA 132

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ AA++ L+    HF 
Sbjct: 133 SLNVTVAASIVLH----HFG 148


>gi|224532063|ref|ZP_03672695.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116]
 gi|224511528|gb|EEF81934.1| tRNA/rRNA methyltransferase [Borrelia valaisiana VS116]
          Length = 218

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 5/155 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIP 188
           R + L   L+ +    N  A +R+        I    K+ + + +  +     G+ + I 
Sbjct: 31  RTNYLTFALEDIFHSQNASATVRTGEILGFSNIHVIDKKNNYTLNPDI---TLGSSQWIN 87

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  +   A+ ++ S G+  +  S + +   LE    N+K+A+  G E  GL  +    
Sbjct: 88  LNKYKDSKFAIDRLKSDGYSIVATSLNEQSINLENFPINNKMAVFFGTELTGLSAEVLGA 147

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A     + M G  ++ N+S A  + +Y       K
Sbjct: 148 ADLYVKIPMYGFTQSYNISVAVGIVMYSLLIRLRK 182


>gi|328869255|gb|EGG17633.1| hypothetical protein DFA_08629 [Dictyostelium fasciculatum]
          Length = 352

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 19/167 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++L       NIG++ R++     + +             + K++ GA E + +   
Sbjct: 167 GLGVLLVDCRSLANIGSVFRTSDGAGFNHVYLCGITGTPPRNEILKTSLGAEEFVNWSYC 226

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN------------------DKIALIL 233
                 ++++   G + I +  SD   PL + +                      I ++ 
Sbjct: 227 HESLHCIKELKRKGVKIIAIEQSDKSIPLLESLDYLYENTKINNNQSEQQQQHSPICVVF 286

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           G E  GL  +  +    +  L M G  ++LN+S A  +  Y+    F
Sbjct: 287 GNEIVGLSEEIIKECDFICDLPMKGQKRSLNISVAFGITSYVLSEKF 333


>gi|316978725|gb|EFV61669.1| putative tRNA/rRNA methyltransferase [Trichinella spiralis]
          Length = 186

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 24/176 (13%)

Query: 113 GLALETAPLLSPTLDAVRNS---QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           G+           +   +NS    L ++ D + DP N+G+++RS  A  C  I+      
Sbjct: 28  GIMAVAKKPTYEEISKSKNSHILPLTVICDGLKDPGNVGSLIRSLAAMGCRRILAVTGCC 87

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                 + +SASGA  +IP     +    L  +                      ++ +I
Sbjct: 88  YFWEVKVLRSASGAHFYIPVYEDISWNRMLDYL-----------------PHDFFRDTEI 130

Query: 230 ALILGAEGKGLRPKTQ----ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            L++G+E  GL  +      + A    H+ M      LN + AA +  +  +   +
Sbjct: 131 VLVVGSERTGLSEQALRFGEQHAGKRLHIPMTNDKFCLNSAVAATLIAFEIRKQMS 186


>gi|148679865|gb|EDL11812.1| mCG129058 [Mus musculus]
          Length = 1534

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+       +  A + +P + 
Sbjct: 1375 SRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSD-RQFQHLSVSAEQWLPLVE 1433

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  S L D LQ+  + G+  IG+   +    L Q    +K  L+LG E +G+     +  
Sbjct: 1434 VRPSQLMDYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQL 1493

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1494 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1524


>gi|156081941|ref|XP_001608463.1| RNA methyltransferase domain containing protein [Plasmodium vivax
           SaI-1]
 gi|148801034|gb|EDL42439.1| RNA methyltransferase domain containing protein [Plasmodium vivax]
          Length = 214

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 10/151 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + + + ++    NIG+I+RS VAF    I    R    ++ V      G  E+I     S
Sbjct: 1   MYVAIYNIGKKKNIGSIVRSCVAFRVSKIFVVSR---KKNQVNFFGHMGTCEYITIEYFS 57

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSM 251
           ++ +    +   G        + S  P+ +    +K  A + G EG G+  +T      +
Sbjct: 58  SMKELKTHLRDNGILLYACEITSSAVPVTRRPFENKDTAFLFGNEGTGINDETLSYCDKV 117

Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQNHFA 281
            ++   G    +LNVS + A+ L+    HFA
Sbjct: 118 VYIPQYGNGTCSLNVSVSCAIILH----HFA 144


>gi|29841334|gb|AAP06366.1| similar to GenBank Accession Number AP001507 tRNA/rRNA
           methyltransferase in Bacillus halodurans [Schistosoma
           japonicum]
          Length = 179

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 21/146 (14%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +   +++LDHV D  N G+ILRSA  F    +I +     S S +++K + GA+E I + 
Sbjct: 15  HRPTVLLLDHVMDIMNFGSILRSAAFFGVSAVILSTAPCVSPSPLISKLSVGAMESIRFY 74

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---------------------NDKI 229
           R+++    ++ +   GF  +G   +++ P  +  K                        +
Sbjct: 75  RLTDTVMDMKSLSKAGFLIVGTCGENQLPPNKVSKPTSFLHPNEVFANNDNNTGVSPRPL 134

Query: 230 ALILGAEGKGLRPKTQETATSMAHLH 255
            L LG+E +GL      +   +  + 
Sbjct: 135 VLALGSESRGLSENILNSCDLLLRIP 160


>gi|86133883|ref|ZP_01052465.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85820746|gb|EAQ41893.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 171

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 5/151 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + +V D +  P NIG   R + +F  + I   +     E+  +  +A   +  I Y   
Sbjct: 17  PITIVCDAIRTPENIGMCFRISESFGVEKIYFHENSPSIENRKVINTARNTINQIEYQTY 76

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETAT 249
           S     +Q++   G   IG+  +D    ++       +KI L+LG+E  G+  +      
Sbjct: 77  SEFDQLIQELKQKGNTIIGIEITDKSIDIQDFDFKKYEKIVLLLGSERNGI--ENINLVD 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M G   ++NV ++ A+ LY   N  
Sbjct: 135 ETIAIPMYGRNSSMNVIHSLAITLYEITNQL 165


>gi|198419564|ref|XP_002121605.1| PREDICTED: similar to TAR RNA binding protein 1 [Ciona intestinalis]
          Length = 1848

 Score =  108 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 63/153 (41%), Gaps = 4/153 (2%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK--RYSPSESAVLAKSASGALEHI 187
            +   L++V   ++ P N+G + R+   F  + +I       S      L+ +A   L+  
Sbjct: 1686 KAGGLVLVASLIDKPSNLGGLTRTCEVFGAEQMIVHSLSCTSDKLFQSLSVTAHKWLKMS 1745

Query: 188  PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               R   L + L+ M   G+  +    ++    L +     K  ++LG E +G+ P    
Sbjct: 1746 EVKRWE-LEEYLESMKRQGYALVATEQTEQSVCLTEYKFPPKCVILLGNEKEGIPPNLLR 1804

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              ++   +   G++++LNV  +  + ++     
Sbjct: 1805 MCSACIEIPQVGVVRSLNVHVSGGITVWEFTRQ 1837


>gi|328779499|ref|XP_001120040.2| PREDICTED: RNA methyltransferase-like protein 1-like [Apis
           mellifera]
          Length = 417

 Score =  108 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 78/193 (40%), Gaps = 5/193 (2%)

Query: 5   SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNP 64
           +K K  +I + K+  + KL+ N +    + +  +  +   +   + L G   ++ AL + 
Sbjct: 79  TKNKETEITAKKNK-FMKLKENDKIITSLMTKLKSRKKREKDNEIILEGQRLITDALKSG 137

Query: 65  SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP 124
                 +    + +A L     LP    +  VP +TI            L +   P ++ 
Sbjct: 138 VIPSVIIYNDPSIIATL----KLPEEVKLYKVPYKTIQLWSALTTSPGLLGIFKTPDVNN 193

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            +       L ++ D++ DP N+G+I+R A A  C+ +I  K         + +SA+G  
Sbjct: 194 NIPVNNALPLTIICDNIRDPGNLGSIMRVATAVGCEKLILMKGCVDLWDPKVLRSAAGTH 253

Query: 185 EHIPYIRISNLTD 197
             +P +      +
Sbjct: 254 FQLPILAFPTWDE 266



 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 219 PLEQEIKNDK-IALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           P        K   +IL  E +GL        +E  +   ++ +   + +LNV  A ++ +
Sbjct: 344 PYYSIDYTKKKSVIILSGETEGLNFNSYKFLKERNSIRINIPLIKGVDSLNVGVALSIVI 403

Query: 274 YITQNHFAK 282
           +  +  F K
Sbjct: 404 FEIKRQFFK 412


>gi|326392900|ref|ZP_08214113.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325991058|gb|EGD49837.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 82

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 52/81 (64%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++LD + DPHN+GAI+RSA AF   GII  KR +   +A + K+++GA+EH+   ++SN+
Sbjct: 2   LILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNI 61

Query: 196 TDALQKMHSWGFQTIGLSSDS 216
            + ++ +   G   +G   ++
Sbjct: 62  NNTIRGLKERGLWIVGTDVNA 82


>gi|145634580|ref|ZP_01790289.1| rRNA methylase [Haemophilus influenzae PittAA]
 gi|145268125|gb|EDK08120.1| rRNA methylase [Haemophilus influenzae PittAA]
          Length = 185

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 13/182 (7%)

Query: 99  QTIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
           + + ++ G E  H G+ L         L   LD  RN   L++LD+VN+  NIG +LR+ 
Sbjct: 4   EELARVSGTE-HHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNNAQNIGGVLRTC 62

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS 214
             F    I+     +   SA   + A G  E+I  +    +  AL ++   G+Q I +S 
Sbjct: 63  AYFGVKNIVADNVEN-LYSAASMRVAEGGAEYIRVLETDYIDSALMQLRKSGYQVIHVSH 121

Query: 215 DSK-KPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA-LNVSNAAAV 271
           + +  PL++    +K+  +L +E      ++  T   +   L +   IK+ LN++  A V
Sbjct: 122 NKQGDPLDKVRLKNKVVFVL-SES---STESLATPEDTQVRLTLASPIKSGLNIAVNAGV 177

Query: 272 AL 273
            L
Sbjct: 178 LL 179


>gi|224047842|ref|XP_002191709.1| PREDICTED: TAR (HIV-1) RNA binding protein 1 [Taeniopygia guttata]
          Length = 1325

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            NS+L++V   ++ P N+G + R++  F    ++    +   +       +  A + +P +
Sbjct: 1167 NSRLIVVASLIDKPTNLGGLCRTSEIFGASALVVGSLHY-IQDKQFQHLSVSAEQWLPLV 1225

Query: 191  RI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  S L D LQ+  + G+  IG+   +K   L +    +K  L+LG E +G+       
Sbjct: 1226 EVKPSQLVDYLQQKKTEGYTIIGVEQTAKSFDLTEYCFPEKSLLLLGNEHEGIPANLIHH 1285

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +   GII++LNV  + A+ ++     
Sbjct: 1286 LDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1317


>gi|297661624|ref|XP_002809335.1| PREDICTED: probable methyltransferase TARBP1-like [Pongo abelii]
          Length = 348

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L++V   ++ P N+G + R+   F    ++                +  A + +P + 
Sbjct: 189 SRLIVVASLIDKPTNLGGLCRTCEVFGAS-VLVIGSLQCISDKQFQHLSVSAEQWLPLVE 247

Query: 192 I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 248 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 307

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +   GII++LNV  + A+ ++     
Sbjct: 308 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 338


>gi|242089459|ref|XP_002440562.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
 gi|241945847|gb|EES18992.1| hypothetical protein SORBIDRAFT_09g003210 [Sorghum bicolor]
          Length = 220

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HN+G + RSA AF    ++   R   S        + GA  H+ +   ++L  A   +  
Sbjct: 18  HNVGTLARSATAFGVAEVVVVGRRDVSAFG-----SHGATSHLRFRHFASLALARAYLKE 72

Query: 205 -WGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIK 261
             G    G+  ++  KP+     +   A + G EG GL  K  +      ++    G   
Sbjct: 73  ERGCDICGVEITEDAKPVTAHPFHRSTAFLFGNEGTGLSQKECDICDFFVYIPQYGGGTA 132

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ AA++ L+    HF 
Sbjct: 133 SLNVTVAASIVLH----HFG 148


>gi|323139053|ref|ZP_08074112.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
 gi|322395713|gb|EFX98255.1| tRNA/rRNA methyltransferase (SpoU) [Methylocystis sp. ATCC 49242]
          Length = 158

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 5/155 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L + L   + P N GA+LR+      D  I      P       ++    L+ +   R
Sbjct: 2   TPLTLALYQPDIPQNAGAMLRTCACLGADAAIIGPAGFPVADRDFRRAGMDYLDQVTIAR 61

Query: 192 ISNLTDALQK---MHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +    +     +   G   + + LS+ + K            L++G E  G+      
Sbjct: 62  HVSFAAFMDWRARLAEAGDRRRLVLLSTRASKSYADCAYQPGDVLLVGRESAGVPDDVFA 121

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            A     + M    ++LNV+ +AA+ L        
Sbjct: 122 AADITVRIPMRPGARSLNVAVSAAIVLSEALRQLG 156


>gi|115462009|ref|NP_001054604.1| Os05g0141400 [Oryza sativa Japonica Group]
 gi|46391115|gb|AAS90642.1| putative OBP33PEP [Oryza sativa Japonica Group]
 gi|113578155|dbj|BAF16518.1| Os05g0141400 [Oryza sativa Japonica Group]
 gi|215701017|dbj|BAG92441.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741370|dbj|BAG97865.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630148|gb|EEE62280.1| hypothetical protein OsJ_17068 [Oryza sativa Japonica Group]
          Length = 224

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203
           HN+G + RSA AF    ++   R   S        + GA  H+ +   ++L  A   +  
Sbjct: 22  HNVGTLARSATAFGVAEVVVVGRRDVSAFG-----SHGATSHLRFRHFASLPLARAYLKD 76

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIK 261
             G    G+  + +  P+         A + G EG GL  K  E      ++    G   
Sbjct: 77  ERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTA 136

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ AA++ L+    HF 
Sbjct: 137 SLNVTVAASIVLH----HFG 152


>gi|332236257|ref|XP_003267321.1| PREDICTED: probable methyltransferase TARBP1 [Nomascus leucogenys]
          Length = 1621

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++                +  A + +P + 
Sbjct: 1462 SRLIVVASLIDKPTNLGGLCRTCEVFGAS-VLVVGSLQCISDKQFQHLSVSAEQWLPLVE 1520

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 1521 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1580

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1581 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1611


>gi|112491246|pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
           Protein 1
 gi|112491247|pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
           Protein 1
          Length = 184

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L++V   ++ P N+G + R+   F    ++                +  A + +P + 
Sbjct: 25  SRLIVVASLIDKPTNLGGLCRTCEVFGAS-VLVVGSLQCISDKQFQHLSVSAEQWLPLVE 83

Query: 192 I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 84  VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 143

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +   GII++LNV  + A+ ++     
Sbjct: 144 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 174


>gi|110825988|ref|NP_005637.3| probable methyltransferase TARBP1 [Homo sapiens]
 gi|74739787|sp|Q13395|TARB1_HUMAN RecName: Full=Probable methyltransferase TARBP1; AltName: Full=TAR
            RNA-binding protein 1; AltName: Full=TAR RNA-binding
            protein of 185 kDa; Short=TRP-185
 gi|1184692|gb|AAC50379.1| TAR RNA loop binding protein [Homo sapiens]
 gi|56204383|emb|CAI22828.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|56205978|emb|CAI22931.1| TAR (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|119590399|gb|EAW69993.1| Tar (HIV-1) RNA binding protein 1 [Homo sapiens]
 gi|162318782|gb|AAI56250.1| TAR (HIV-1) RNA binding protein 1 [synthetic construct]
 gi|1586092|prf||2203267A TRP-185 protein
          Length = 1621

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++                +  A + +P + 
Sbjct: 1462 SRLIVVASLIDKPTNLGGLCRTCEVFGAS-VLVVGSLQCISDKQFQHLSVSAEQWLPLVE 1520

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   +K   L Q    +K  L+LG E +G+     +  
Sbjct: 1521 VKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1580

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1581 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1611


>gi|297201026|ref|ZP_06918423.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197712190|gb|EDY56224.1| rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 248

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 84/233 (36%), Gaps = 16/233 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW----DANLPHPFPVKTVPPQTIDKI 104
           + L G H +  A+   +     +   + A   L      D        +  VP      +
Sbjct: 18  VLLDGFHALKHAVRFGAEVPVAVAVDRGAALALAEELAPDVRDTLDALLTQVPESAYASL 77

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSAVAFSCDG 161
           V +       AL   P  +  L+ + ++     ++VLD+  +  N GA++R A  F   G
Sbjct: 78  VPRPHPTGVAALAVRPSRAAHLEKLAHTPRTTPVVVLDNPRNLGNAGAVIRLAAGFGATG 137

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           ++TT          + +  +G        R+      + ++         L  +    + 
Sbjct: 138 VVTTG-TLDPWHPTVVRGGAGLHFATAVERL-----TVAEL--PPGPVFALDPEG-DDIR 188

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                D   L  G+E  GL P+ +  A  +  L M   + + N++ + A+ LY
Sbjct: 189 GVKLPDDAVLAFGSERSGLSPELRARAGHLVALPMRPQVSSYNLATSVAMTLY 241


>gi|322494359|emb|CBZ29660.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 2035

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 5/168 (2%)

Query: 117  ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            E    L P     +   +++V   + +P NI  + R    F+ + I+  ++    E    
Sbjct: 1861 EVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESIVVPEKK-VFEHPHF 1919

Query: 177  AKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
              +A  A   IP+  +   +L   L+ +   G+  +G+  + +  PLEQ    ++ A++L
Sbjct: 1920 VAAARSAELWIPWEEVVPKDLPYYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVL 1979

Query: 234  GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            GAEG+G+             +   G+I++LNV  A A+ +Y  T+ H 
Sbjct: 1980 GAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2027


>gi|224000635|ref|XP_002289990.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220975198|gb|EED93527.1| rRNA methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 302

 Score =  107 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 4/145 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R S+L++V++   + HN  AILR+A A     +      +   ++ L   A  A E +  
Sbjct: 1   RTSRLVIVVERCTNDHNYSAILRTAEALGVQHVYIISPKT--INSTLVDEA--ATEWLTV 56

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +  + ++ + S   +              E    K+A++ G E  G   +    A 
Sbjct: 57  HEFDDTKECIETLRSENREIWVTDLSQVASCLTEEGIQKVAIVFGTEAVGCTAEMLNAAD 116

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
              +L + G   +LN+S A A+ ++
Sbjct: 117 LRVYLPLRGFADSLNLSVATALVVH 141


>gi|281204193|gb|EFA78389.1| anaphase promoting complex subunit 3 [Polysphondylium pallidum PN500]
          Length = 1113

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 33/180 (18%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            R  ++ +V D+V    N+ AI+RS  A     I                 + G  + +  
Sbjct: 886  RTDRVAIVCDNVKTTGNVAAIIRSCEAMGIQHIHVID---DQPYTPFNDISKGTEKWVTV 942

Query: 190  IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDK-------------------- 228
             R     D +  +    +Q       +     +  +K                       
Sbjct: 943  HRHHTPLDCVDYLKQQRYQIWSSDLCEGAIRFDNLVKTLPATTTTTSTTTTTTSIISQND 1002

Query: 229  ---------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     IA++ G E  G+    +  +     L M G++++ NVS +  + L + Q  
Sbjct: 1003 NDNDDNNNRIAIVFGNEKSGVTEDMKILSDKRIFLPMYGMVQSFNVSVSVGMTLAMLQMQ 1062


>gi|293343446|ref|XP_002725485.1| PREDICTED: rCG50916-like [Rattus norvegicus]
          Length = 1500

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+       +  A + +P + 
Sbjct: 1341 SRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSD-RQFQHLSVSAEQWLPLVE 1399

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  S L D LQ+  + G+  IG+   +    L Q    +K  L+LG E +G+     +  
Sbjct: 1400 VRPSQLVDYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPVNLIQQL 1459

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1460 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1490


>gi|229577450|ref|NP_001153379.1| TAR (HIV-1) RNA binding protein 1 [Mus musculus]
          Length = 1579

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+       +  A + +P + 
Sbjct: 1420 SRLIVVASLIDKPTNLGGLCRTCEVFGAAVLVVGSLQCVSD-RQFQHLSVSAEQWLPLVE 1478

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  S L + LQ+  + G+  IG+   +    L Q    +K  L+LG E +G+     +  
Sbjct: 1479 VRPSQLMNYLQQKKAEGYTVIGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQL 1538

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1539 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1569


>gi|160880554|ref|YP_001559522.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160429220|gb|ABX42783.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 238

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 14/226 (6%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHP-FPVKTVPPQTIDKIVGKEAVHQGLAL 116
              + +    +  +        R   +A       PV     +TI K+  KE V     +
Sbjct: 23  IEMIKSRPDIVKGVYIHSTFTDREHLEAICKENHIPVLQGD-KTIAKVSDKENV---FVV 78

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                 S T+DA ++    +VL + ++  N+G ILR+AV F    +   +  +   +  +
Sbjct: 79  GVFEKYSCTVDATKSQ---IVLVNPSNMGNLGTILRTAVGFGIHDVSFIEPGADVFNPKV 135

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILG 234
            +S+ GAL  + +    + ++   +  +   +      + KKPL           +L+ G
Sbjct: 136 VRSSMGALFRLRHQYFESFSEY--QKQNPNHEIFTFMLNGKKPLTINDCPKPKLFSLVFG 193

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNH 279
            E  GL        TS+  +     + +LN++ A  +  Y+ TQN+
Sbjct: 194 NEATGLDDSYLSVGTSII-IPQSEEVDSLNLTIAVGIGTYLFTQNN 238


>gi|260221272|emb|CBA29671.1| hypothetical protein Csp_A13310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 66

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + Q      +AL+LGAEG G+R  T +T   +  + M G +++LNVS A+ + LY     
Sbjct: 1   MYQADLKGPVALVLGAEGDGMRQLTAKTCDQLVSIPMQGAVESLNVSVASGLCLYEALRQ 60

Query: 280 F 280
            
Sbjct: 61  R 61


>gi|114573243|ref|XP_514281.2| PREDICTED: probable methyltransferase TARBP1 [Pan troglodytes]
          Length = 1621

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++                +  A + +P + 
Sbjct: 1462 SRLIVVASLIDKPTNLGGLCRTCEVFGAS-VLVVGSLQCISDKQFQHLSVSAEQWLPLVE 1520

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    L D LQ+  + G+  IG+   ++   L Q    +K  L+LG E +G+     +  
Sbjct: 1521 VKPPQLIDYLQQKKTEGYTIIGVEQTARSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1580

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1581 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1611


>gi|322505559|emb|CAM43084.2| conserved hypothetical protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 2037

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 5/168 (2%)

Query: 117  ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            E    L P     +   +++V   + +P NI  + R    F+   I+   +    E    
Sbjct: 1863 EVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPDKR-VFEHPHF 1921

Query: 177  AKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
              +A  A   IP+  +   +L   L+ +   G+  +G+  + +   +E      + A++L
Sbjct: 1922 VAAARSAELWIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFSFPKRCAVVL 1981

Query: 234  GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            GAEG+G+             +   G+I++LNV  A AV +Y  T+ H 
Sbjct: 1982 GAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHL 2029


>gi|154343391|ref|XP_001567641.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 2037

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 5/168 (2%)

Query: 117  ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            E    L P     +   +++V   + +P NI  + R    F+   I+   +    E    
Sbjct: 1863 EVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVQSIVVPDKR-VFEHPHF 1921

Query: 177  AKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
              +A  A   IP+  +   +L   L+ +   G+  +G+  + +   +E      + A++L
Sbjct: 1922 VAAARSAELWIPWEEVMPKDLPCYLEGLRRRGYMVVGIEQTAASVSMEHFSFPKRCAVVL 1981

Query: 234  GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            GAEG+G+             +   G+I++LNV  A AV +Y  T+ H 
Sbjct: 1982 GAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAVIMYEYTRQHL 2029


>gi|327262182|ref|XP_003215904.1| PREDICTED: probable methyltransferase TARBP1-like [Anolis
            carolinensis]
          Length = 1589

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 5/156 (3%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIP 188
            NS+L++V   ++ P N+G + R+   F    +I    +     +   L+ SA   L  + 
Sbjct: 1430 NSKLIVVASLLDKPTNLGGLCRTCEIFGVSALIVGSIHYIHDKQFQYLSVSAEQWLSLLE 1489

Query: 189  YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
                  L D L++    G+  IG+   +K   L +    +K  L+LG E +G+     + 
Sbjct: 1490 VKPF-QLADYLEQKKIEGYTIIGVEQTAKSCDLTEYSFPEKSLLLLGNEHEGIPANLIQQ 1548

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
              +   +   G+I++LNV  + A+ ++  T+    K
Sbjct: 1549 LDTCVEIPQQGVIRSLNVHVSGALLIWEYTRQQIVK 1584


>gi|154507934|ref|ZP_02043576.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797568|gb|EDN79988.1| hypothetical protein ACTODO_00420 [Actinomyces odontolyticus ATCC
           17982]
          Length = 243

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 65/154 (42%), Gaps = 6/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R+    + +++++   NIG+I+R+A A     +    R          + A     ++
Sbjct: 89  AARSLPFEVAVENLDHDFNIGSIVRTANAMGARRVHVVGR-----KRWNRRGAMVTDRYL 143

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P      + + ++     G   +G+   +    LE  +  ++  L+ G+E  GL  +   
Sbjct: 144 PVDHRPEVRELVEHCSKEGLTLVGVDNVEGSVALEGAVLPERACLVFGSEASGLSEEMIR 203

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              S+  +   G  +++NV +AAA+ ++   +  
Sbjct: 204 ACDSVVAITQRGSTRSMNVGHAAAIVMWAHASRL 237


>gi|118088202|ref|XP_419559.2| PREDICTED: similar to TAR RNA loop binding protein [Gallus gallus]
          Length = 1328

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            NS+L++V   ++ P N+G + R++  F    ++    +   +       +  A + +P +
Sbjct: 1169 NSRLIVVASLIDKPTNLGGLCRTSEIFGASALVVGSLHYVQDKQ-FQHLSVSAEQWLPLV 1227

Query: 191  RI--SNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  S L D LQ+  + G+  IG+   +K   L +    +K  L+LG E +G+       
Sbjct: 1228 EVKPSQLVDYLQQKKTEGYTAIGVEQTAKSYDLTEYCFPEKSLLLLGNEHEGIPANLIHH 1287

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +   GII++LNV  + A+ ++     
Sbjct: 1288 LDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1319


>gi|125550794|gb|EAY96503.1| hypothetical protein OsI_18405 [Oryza sativa Indica Group]
          Length = 168

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203
           HN+G + RSA AF    ++   R   S        + GA  H+ +   ++L  A   +  
Sbjct: 20  HNVGTLARSATAFGVAEVVVVGRRDVSAFG-----SHGATSHLRFRHFASLPLARAYLKD 74

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP-GIIK 261
             G    G+  + +  P+         A + G EG GL  K  E      ++    G   
Sbjct: 75  ERGCDICGVEITHNALPVTAHPFRRSTAFLFGNEGTGLSQKECEICDFFVYIPQYGGGTA 134

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ AA++ L+    HF 
Sbjct: 135 SLNVTVAASIVLH----HFG 150


>gi|325120007|emb|CBZ55560.1| rRNA methylase, related [Neospora caninum Liverpool]
          Length = 513

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 20/232 (8%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDK-IVGKEAVHQGL------ 114
            +  RK  +  A K   + L    +  H F         I+K        H G+      
Sbjct: 253 KHSKRKDDRRFAGKGKDSTLLAPGDF-HGF----ASSSKIEKGAADTGLPHLGMSVKTGS 307

Query: 115 --ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
              +        + D   +++ ++ L  V    N+G ++R+A +   DG+      +   
Sbjct: 308 KRVVGILKRPRESFD-FGSARCILALCGVRYVWNVGILVRTAASLGFDGVYYVDGTADPF 366

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP---LEQEIKNDKI 229
           S  + + + G   ++P+    +  + L+         I      ++P       + +  I
Sbjct: 367 SWKVMEVSRGLHYNLPHF-HGSAENLLRMCEESDLLPIAADISGERPEAFHGAVMSHRGI 425

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             ILG E +GL     +       L M  ++ +LNV  A  + +Y  +   A
Sbjct: 426 CCILGNESRGLSEVILQHC-RRVALPMSSLLDSLNVGIAGGIVMYEMKKILA 476


>gi|169351445|ref|ZP_02868383.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552]
 gi|169291667|gb|EDS73800.1| hypothetical protein CLOSPI_02225 [Clostridium spiroforme DSM 1552]
          Length = 246

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 18/229 (7%)

Query: 58  SAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQ-TIDKIVGKEAVHQGL 114
              L N    + ++    N      +    +L     +  +    TI+K+  K+      
Sbjct: 22  IELLKNKPDLVLRVYIKSNSYKNKGIGIIDDLCKRNKIDLIESDNTINKLSKKDN----- 76

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
               A +   +++    + +++V  +  D  N+G I+R+ + F  + +   +        
Sbjct: 77  CFAIAIIKKYSMELKNTNHVVLV--NPGDMGNMGTIIRTMLGFGYNDLAIIRPGVDVFDP 134

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALIL 233
            + +++ GA+ +I +       D L K  +       L     K +     +DK  +L+ 
Sbjct: 135 KVVRASMGAIFNINFEYFDTFDDYLHKYPNRD--IYPLMLKGAKNIHLIEPDDKNYSLVF 192

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E  GL  +          +     I +LN+S A  + LY    HF+K
Sbjct: 193 GNESSGLPDEFLNYG-QSIFIPHSDKIDSLNLSMALGITLY----HFSK 236


>gi|157874196|ref|XP_001685588.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128660|emb|CAJ08792.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 2043

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 117  ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            E    L P     +   +++V   + +P NI  + R    F+ + I+  ++    E    
Sbjct: 1869 EVYNELHPRSLRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAVESIVVPEKK-VFEHPHF 1927

Query: 177  AKSASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
              +A  A   IP+  ++  +L   L+ +   G+  +G+  + +  PLEQ    ++ A++L
Sbjct: 1928 VAAARSAELWIPWEEVAPKDLPCYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVL 1987

Query: 234  GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            GAEG+G+             +   G+I++LNV  A A+ +Y  T+ H 
Sbjct: 1988 GAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2035


>gi|293190410|ref|ZP_06608842.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292820994|gb|EFF79949.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 243

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 64/154 (41%), Gaps = 6/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R+    + +++++   NIG+I+R+A A     +    R          + A     ++
Sbjct: 89  AARSLPFEVAVENLDHDFNIGSIVRTANAMGARRVHVVGR-----KRWNRRGAMVTDRYL 143

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P      + + ++     G   +G+   +    LE  +  ++  L+ G+E  GL  +   
Sbjct: 144 PVDHRPEVRELVEHCSKEGLTLVGVDNVEGSVALEGAVLPERACLVFGSEASGLSEEMIR 203

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +   G  +++NV +AAA+ ++   +  
Sbjct: 204 ACDIVVAITQRGSTRSMNVGHAAAIVMWAHASRL 237


>gi|291402154|ref|XP_002717373.1| PREDICTED: TAR RNA binding protein 1 [Oryctolagus cuniculus]
          Length = 1629

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 66/153 (43%), Gaps = 4/153 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            NS+L++V   ++   N+G + R+   F    +        S+       +  A + +P +
Sbjct: 1460 NSRLIVVASLIDKATNLGGLCRTCEVFGASVLAVGNLQCVSDKQ-FQHLSVSAEQWLPLV 1518

Query: 191  RI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +    L D LQ+  + G+  IG+   +K   L +    +K  L+LG E +G+     + 
Sbjct: 1519 EVRPPQLVDYLQQKKAEGYTIIGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQ 1578

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  +   G++++LNV  + A+ ++      
Sbjct: 1579 LDVCVEIPQQGVVRSLNVHVSGALLIWEYTRQR 1611


>gi|322501925|emb|CBZ37008.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 2045

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 5/168 (2%)

Query: 117  ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            E    L P     +   +++V   + +P NI  + R    F+ + ++  ++    E    
Sbjct: 1871 EVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLVVPEKK-VFEHPHF 1929

Query: 177  AKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
              +A  A   IP+  +   +L   L+ +   G+  +G+  + +  PLEQ    ++ A++L
Sbjct: 1930 VAAARSAELWIPWEEVMPKDLPGYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVL 1989

Query: 234  GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            GAEG+G+             +   G+I++LNV  A A+ +Y  T+ H 
Sbjct: 1990 GAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2037


>gi|134103609|ref|YP_001109270.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291004854|ref|ZP_06562827.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916232|emb|CAM06345.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 215

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++    HNIG ++R+A AF+   +    R          + A     +   
Sbjct: 62  RRHGFHVAIENFQHDHNIGTVVRTANAFAARAVHIVGRR-----RWNRRGAMVTDRYQHV 116

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +L              + +  +   +P+E+    ++  L+ G EG GLR +++E A
Sbjct: 117 HHHPDLESLRAYAREHSLAVVAVDNTQGSRPIERTALPERCVLLFGQEGPGLRDESREGA 176

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
             +  +   G  +++N   AA + ++   + H
Sbjct: 177 DLVVSIAQFGSTRSINAGVAAGIVMHTWIEQH 208


>gi|119936308|gb|ABM06104.1| hypothetical protein LOC79922 [Bos taurus]
          Length = 178

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 15/126 (11%)

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--------SSD 215
             K  S   + V++K+++GA+E +      +L   LQ     G+   G         +  
Sbjct: 1   MGKPCSCPLTPVVSKASAGAMEVMDVFSTDDLAGFLQARARQGWLVAGTVGCPGPEIALS 60

Query: 216 SKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNA 268
           SK P+      + +    L+LG EG GL    Q +   +  +     +P  +++LNVS A
Sbjct: 61  SKIPVTRCLDFLWDRPTLLVLGNEGSGLSRAVQASCQLLLTILPGRQLPPGLESLNVSVA 120

Query: 269 AAVALY 274
           A + L+
Sbjct: 121 AGILLH 126


>gi|237784924|ref|YP_002905629.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757836|gb|ACR17086.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 239

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++    HNIG ++R+A AF+ + +    +          + A     + 
Sbjct: 84  DTRRFPFHVAIENFTSDHNIGTVVRTANAFAAEAVHIVGK-----KRWNRRGAMVTDRYQ 138

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                S + D LQ  H      I +       P+E     ++  L+ G EG G+  + Q 
Sbjct: 139 HLYHHSTVNDVLQWAHEHDLTVIAVDNVPGSVPVETAELPERCLLLFGQEGPGVSEEAQR 198

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 199 GAVQTVSIAQFGSTRSINAGVAAGIAMHAWVRQH 232


>gi|146096859|ref|XP_001467955.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134072321|emb|CAM71027.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 2045

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 5/168 (2%)

Query: 117  ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            E    L P     +   +++V   + +P NI  + R    F+ + ++  ++    E    
Sbjct: 1871 EVYNELHPRALRTQKQSIIVVGSLLENPVNIAGLCRCGEIFAIESLVVPEKK-VFEHPHF 1929

Query: 177  AKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALIL 233
              +A  A   IP+  +   +L   L+ +   G+  +G+  + +  PLEQ    ++ A++L
Sbjct: 1930 VAAARSAELWIPWEEVVPKDLPGYLEGLRRRGYVVVGIEQTAASVPLEQFSFPERCAVVL 1989

Query: 234  GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            GAEG+G+             +   G+I++LNV  A A+ +Y  T+ H 
Sbjct: 1990 GAEGQGVPAPLIPLLDVCVEIPQYGLIRSLNVHVAGAITMYEYTRQHL 2037


>gi|46446084|ref|YP_007449.1| putative tRNA (guanosine-2'-O-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46399725|emb|CAF23174.1| putative tRNA (Guanosine-2'-O-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 246

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + LD++   HN+G+I+R+  AFS   I  + +   +    +   + GA + +   + 
Sbjct: 89  PISIYLDNLRSAHNVGSIIRTVEAFSLGSIYFSTQTPYTNHKQVQNVSMGAYQWVKCYQN 148

Query: 193 SNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            +L D  Q         I L +S+    L + I  +   L++G E  G   +    A  +
Sbjct: 149 EDLNDLTQ-------PIIALETSEEAINLYEFIFPEHFTLVVGNEEYGCSQEILTKAHYL 201

Query: 252 AHLHMPGIIKALNVSNAAAVA---LYITQNHFAK 282
             + + G   +LNV+NA A+    +Y  Q   AK
Sbjct: 202 IEIPLRGRKNSLNVANAFAITAGEIY-RQRKTAK 234


>gi|308799147|ref|XP_003074354.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
 gi|116000525|emb|CAL50205.1| OBP33pep like protein (ISS) [Ostreococcus tauri]
          Length = 249

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 19/162 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  ++ +V  +V   HN+G ++RS  AF    ++             A  + GA  H+ +
Sbjct: 29  RRPEMYVVAHNVAKRHNLGMMMRSCTAFDVKALVLIGSR-----KFNAFGSQGADAHVAF 83

Query: 190 IRISNLTDALQKM-HSWGF-QTIGLS-SDSKKPLEQEIKNDKIALILGAE------GKGL 240
                L +A + +    G  + +G+   +S +P+E        A ++G E      G GL
Sbjct: 84  EHYETLREAREGLTAKRGVTRVLGVEIVESAEPIESHPFTGNTAFVMGNEARLDAQGHGL 143

Query: 241 RPKTQETATSMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
             + +       ++   G    +LNVS AA++ ++     FA
Sbjct: 144 TEQQKAICDGFVYIRQYGPGTASLNVSVAASIVMH----QFA 181


>gi|221054155|ref|XP_002261825.1| SpoU rRNA Methylase [Plasmodium knowlesi strain H]
 gi|193808285|emb|CAQ38988.1| SpoU rRNA Methylase, putative [Plasmodium knowlesi strain H]
          Length = 264

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 10/158 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  +  Q+ + + ++    NIG+I+RS VAF    I    R     + +      G  ++
Sbjct: 21  DPTKCPQMYVAIYNIGKKKNIGSIVRSCVAFGVSKIFVVSR---KRNEINFFGQMGTCKY 77

Query: 187 IPYIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           I     SN+ +    + +         ++  +         N   A + G EG G+  +T
Sbjct: 78  ITIEYFSNMKELRIHLANNNILLYACEITDRAIAVTRTPFVNKDTAFLFGNEGTGINDET 137

Query: 245 QETATSMAHLHMPGIIK-ALNVSNAAAVALYITQNHFA 281
                 + ++   G    +LNVS + A+ L+    HFA
Sbjct: 138 LSYCDKIIYIPQYGNGTCSLNVSVSCAIILH----HFA 171


>gi|227489272|ref|ZP_03919588.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227540862|ref|ZP_03970911.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090803|gb|EEI26115.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183394|gb|EEI64366.1| RNA methyltransferase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 213

 Score =  105 bits (264), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 12/178 (6%)

Query: 108 EAVHQGLALE----TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           E  H+ +       T   +   +D  R   L + +++  +  NIG ++R+A AF+ D + 
Sbjct: 35  EGDHRNVVDAYRYWTREAIVEDIDT-RRHPLHIAIENFENDMNIGTVVRTANAFAVDTVH 93

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQ 222
              R          + A     +   +    + D +   +    Q + + +     PLE 
Sbjct: 94  IVGRR-----RWNRRGAMVTDRYQHLMHHDTIADLISWANEQDLQVLAIDNIPGSVPLET 148

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
               ++  L+ G EG G+ P+ Q+ A     +   G  +++N   AA +A++   + H
Sbjct: 149 ATLPERCLLLFGQEGPGVTPEAQDAAVMTLSIAQFGSTRSINAGVAAGIAMHTWIRQH 206


>gi|291438474|ref|ZP_06577864.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291341369|gb|EFE68325.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 252

 Score =  105 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 32/248 (12%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK------- 94
           H      + L G H    AL +  R   ++L    A               V+       
Sbjct: 12  HRQSGTAVLLDGFH----ALKHAVRFRAEVLVAVTADRAAALALADELAPDVRDTLAALL 67

Query: 95  -TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAI 150
             VP  T   +V +       AL   P  +  L+ +  +     ++VLDH  +  N GA+
Sbjct: 68  TEVPHATYASLVPRTHPTAVAALAVRPSRAGHLERLARTPRTAPVVVLDHPRNLGNAGAV 127

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG---- 206
           +R A  F   G++TT          + +  +G        R++            G    
Sbjct: 128 IRLAAGFGATGVVTTG-TLDPWHPTVVRGGAGLHFATAVERLT-----------AGELPP 175

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                L  + +     ++ +D + L  G+E  GL P+ +  A  +  L M  ++ + N++
Sbjct: 176 GPVFALDPEGEDIRGTKLPDDAL-LAFGSERSGLSPELRARADHLIALPMRSMVSSYNLA 234

Query: 267 NAAAVALY 274
            + A+ LY
Sbjct: 235 TSVAMTLY 242


>gi|239930134|ref|ZP_04687087.1| rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 249

 Score =  105 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 89/248 (35%), Gaps = 32/248 (12%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK------- 94
           H      + L G H    AL +  R   ++L    A               V+       
Sbjct: 9   HRQSGTAVLLDGFH----ALKHAVRFRAEVLVAVTADRAAALALADELAPDVRDTLAALL 64

Query: 95  -TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAI 150
             VP  T   +V +       AL   P  +  L+ +  +     ++VLDH  +  N GA+
Sbjct: 65  TEVPHATYASLVPRTHPTAVAALAVRPSRAGHLERLARTPRTAPVVVLDHPRNLGNAGAV 124

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG---- 206
           +R A  F   G++TT          + +  +G        R++            G    
Sbjct: 125 IRLAAGFGATGVVTTG-TLDPWHPTVVRGGAGLHFATAVERLT-----------AGELPP 172

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                L  + +     ++ +D + L  G+E  GL P+ +  A  +  L M  ++ + N++
Sbjct: 173 GPVFALDPEGEDIRGTKLPDDAL-LAFGSERSGLSPELRARADHLIALPMRSMVSSYNLA 231

Query: 267 NAAAVALY 274
            + A+ LY
Sbjct: 232 TSVAMTLY 239


>gi|325186501|emb|CCA21041.1| hypothetical protein VOLCADRAFT_116506 [Albugo laibachii Nc14]
          Length = 314

 Score =  105 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R S++++VL+   D  N  A+LR+A       +   +           + A  + + I  
Sbjct: 83  RTSRIVLVLEASCDMFNQQAVLRTAECLGVQHVWIVEPAFYKAVKSDRRIARQSSQWISV 142

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQE 246
            R       L  + + G++        +    Q       D++A+++G E  G+     +
Sbjct: 143 RRFKTSEACLVALFAEGYEVWATDLSQRSVSLQSGTLSVPDRLAIVMGRETDGVSETMLQ 202

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
            A    +L + G   +LN++ A  + L+
Sbjct: 203 AAQHRVYLPIYGFTDSLNLNVATGMVLF 230


>gi|296230937|ref|XP_002807779.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase
            TARBP1-like [Callithrix jacchus]
          Length = 1626

 Score =  105 bits (263), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 132  SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            S+L++V   ++ P N+G + R+   F    ++       S+       +  A + +P + 
Sbjct: 1467 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQY-LSVSAEQWLPLVE 1525

Query: 192  I--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +    LT  LQ+  + G+  IG+   ++   L Q    +K  L+LG E +G+     +  
Sbjct: 1526 VKPPQLTAYLQQKKTEGYTIIGVEQTARSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 1585

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  + A+ ++     
Sbjct: 1586 DVCVEIPQQGIIRSLNVHVSGALLIWEYTRQ 1616


>gi|326433369|gb|EGD78939.1| hypothetical protein PTSG_01913 [Salpingoeca sp. ATCC 50818]
          Length = 381

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 91/279 (32%), Gaps = 90/279 (32%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLA----------------------LETAPLLS 123
           N     PV+ V    +DK+    AVHQG+A                          P  S
Sbjct: 94  NKGQVVPVEVVSRHQLDKLTA-GAVHQGVALRASQYPLDPWSLAMLERDVREATAQPNSS 152

Query: 124 PTLDAVRNSQLL---------------------------------MVLDHVNDPHNIGAI 150
             L     ++ +                                 +++  V DP N+G+I
Sbjct: 153 HLLGDPAGARTVARAAKPARTTPPSQQQASSAFPPLSLPPRLPLYVLVTGVQDPVNLGSI 212

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           LRS+       +  + R +   ++ ++KS++GALE +    + +    +      GF + 
Sbjct: 213 LRSSYCLGVRRVFLSDRQTLKPTSTVSKSSAGALELLDVHTVRDEASFIAHAADHGFLSF 272

Query: 211 GLSS----DSKKPL------------------------EQEIKNDKIA----LILGAEGK 238
                   +S++P                            + +   A    L++G E +
Sbjct: 273 AACMQPNANSQQPHMSTADLLLPTQASTPPSLSSSLPSADALASGATARGALLVVGNEHR 332

Query: 239 GLRPKTQETATSMAHLHM--PGIIKALNVSNAAAVALYI 275
           G+     +  T+   +      ++ +LNV  AA + ++ 
Sbjct: 333 GIHANVVDACTATLAVDQHRSHLVDSLNVGVAAGILIHA 371


>gi|224543716|ref|ZP_03684255.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523369|gb|EEF92474.1| hypothetical protein CATMIT_02929 [Catenibacterium mitsuokai DSM
           15897]
          Length = 243

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 16/235 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLA----TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           GV      L +    + +++      +N       +    H  P+  V   TI+K+  K 
Sbjct: 15  GVFPTIELLEHKPDIVKRVVVHSSIEENRGYPKIKELCALHHIPID-VHDATINKLSPKS 73

Query: 109 AVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
                 A+         L    +    +VL +  D  N+G I+R+ + F    +   +  
Sbjct: 74  ---NCYAIGVFKTFYEPLQKGNH----IVLVNPMDMGNMGTIMRTMLGFGYQDLAIIRPA 126

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
               +  + +S+ GAL  +      ++ + L++      Q         K + Q      
Sbjct: 127 VDIFNPHVVRSSMGALFSLRIHYYESIDEYLKEFGDH--QCYPFMLKGAKNIHQVKPVTP 184

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV-ALYITQNHFAK 282
            +LI G E  GL      T      +     I +LN++ +  +   + +Q+ F K
Sbjct: 185 HSLIFGNESSGL-DDIYMTYGQSVFIPHTNAIDSLNLAQSVGIGLFHFSQDAFNK 238


>gi|308163268|gb|EFO65618.1| TAR RNA loop binding protein, putative [Giardia lamblia P15]
          Length = 209

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 5/138 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDALQKMH 203
           N+G + R+A AF  D ++     S +        +  A   +    +R   L   + +  
Sbjct: 67  NLGGLARTAEAFGLDSLVLGSA-SFALDPSFKAMSMTADMWLNIEEVRPYKLAQWIAEKR 125

Query: 204 SWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G+  + L   SK   L+      K  L+LG E +G   +          +   G I++
Sbjct: 126 KEGYSVVCLEQSSKSVYLQDAKLPQKTVLVLGNERRGCPEEILSLCDMTVEIQQLGNIRS 185

Query: 263 LNVSNAAAVALY-ITQNH 279
           LNV  + A+ ++     H
Sbjct: 186 LNVHVSCAIFVWKWACQH 203


>gi|311112473|ref|YP_003983695.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310943967|gb|ADP40261.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 246

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 9/155 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++     NIG ++R+A AF    +    +          + A     + 
Sbjct: 92  DTRRHDFHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGK-----KRWNRRGAMVTDRYQ 146

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                  + D +      G   IG+    DS  PLE         L+ G EG GL  +  
Sbjct: 147 HVRHHPTIEDFVAWAQGEGLDIIGIDIFPDS-VPLETYDLPKNCVLVFGQEGPGLSEEIH 205

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
             A     +   G  +++N + AA +A++   + H
Sbjct: 206 AAARDTLSIEQFGSTRSMNAATAAGIAMHAWVRRH 240


>gi|156547687|ref|XP_001604773.1| PREDICTED: similar to TAR RNA loop binding protein [Nasonia
            vitripennis]
          Length = 1450

 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 62/167 (37%), Gaps = 4/167 (2%)

Query: 117  ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
            E A L +   +      +++V   +    N+G I R+   F    ++ +      E    
Sbjct: 1281 EIADLSNYRKECNNKQDIVVVASLIEKSQNLGGIARTCEIFGVKQLVVSNLKQ-IEDKEF 1339

Query: 177  AKSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALIL 233
               +  A + I  I + +  L + L ++   G+  IG    +    L       +  L+L
Sbjct: 1340 QVLSVSADKWIKIIEVKSFSLANYLLELKDCGWTLIGAEQTANSVNLYDLKYPKQTVLVL 1399

Query: 234  GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G E  G+             +   G+I++LNV   +A+ ++     +
Sbjct: 1400 GNEKNGIPANIIPLLDMCVEISQFGVIRSLNVHVTSAICIWEYVKQY 1446


>gi|254444144|ref|ZP_05057620.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198258452|gb|EDY82760.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 241

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 21/236 (8%)

Query: 55  HTVSAALNNPSRKIFQLLATKNALARLDWDANL--PHPFPVKTVPPQTIDKIVGKEAVHQ 112
           H V +  +     + +L                      P   V    + ++ G    H 
Sbjct: 2   HAVGSLFHCKPFIVERLYFEMELAPMFGEICKFLAKEKKPYNQVDSAELLRVSGT-PHHG 60

Query: 113 GLALETAPLLSPTLDAVRNSQLL-------MVLDHVNDPHNIGAILRSAVAFSCDG-IIT 164
           G+         P L     ++         ++LD V+   N+G I R++  F  +  +I 
Sbjct: 61  GVVAIVRRRP-PELATTTAAEFWAKEGMPMLILDGVSSVANLGGIARTSAYFGVEKFLIA 119

Query: 165 TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK------K 218
             R          + A G L+ +    + N+   L+      F  IGL  +         
Sbjct: 120 ATRKQARPCEEAYREARGGLDMVDLRLVDNVPSFLKGARKTHF-VIGLDIEGPPLPELMG 178

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA-AAVAL 273
              ++     +A+++G E  GL   +++  + +  +   G I  L+V  A  A+ L
Sbjct: 179 ICPEDELEKPVAIVIGNEETGLHESSKQECSVLVGIPGSGAIDRLSV-VAETALLL 233


>gi|303283642|ref|XP_003061112.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457463|gb|EEH54762.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 184

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 22/154 (14%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           ++ ++   HN+G I R A AF    ++     +   +    K   GA  H+ ++   +L 
Sbjct: 3   IVHNIAKKHNVGTIARCATAFGVRAVVLVGAKA--YNTFGCK---GASNHVDFLHYPSLH 57

Query: 197 DALQKM--------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            A + +           G +      D    +++       A I+G EG GL    +   
Sbjct: 58  AAREGLTAPPHRVRKIMGVEI----MDDAVAIDERPFEGSTAFIMGNEGDGLTDAQKAIC 113

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
               ++   G    +LNVS AA++ ++    HFA
Sbjct: 114 DGFVYIRQHGVGTASLNVSVAASIVMH----HFA 143


>gi|255326412|ref|ZP_05367494.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
 gi|255296452|gb|EET75787.1| tRNA/rRNA methyltransferase [Rothia mucilaginosa ATCC 25296]
          Length = 251

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 9/155 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++     NIG ++R+A A     +    R          + A     + 
Sbjct: 96  DTRRHDFHVAIENWQHDLNIGTVVRTANAMLAKEVHIIGRR-----RWNRRGAMVTDRYQ 150

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                  + D +      G + IG+    DS  PLE      K  L+ G EG GL  +  
Sbjct: 151 HVRHHPTIEDFVAWAQGEGLEIIGIDIFPDS-VPLETYDLPKKCVLVFGQEGPGLSEELH 209

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
             A     +   G  +++N + AA +A++   + H
Sbjct: 210 AAARDTLSIEQFGSTRSMNAATAAGIAMHAWVRRH 244


>gi|167517941|ref|XP_001743311.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778410|gb|EDQ92025.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1541

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 126  LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGAL 184
            +   +   L++    VN P+N+G + R+   F+ D ++        S+       +S   
Sbjct: 1378 IHDRKRFPLIVAASFVNIPYNLGGLTRTCEIFNADRLVMPDNRVLQSKEYKGVSVSSERW 1437

Query: 185  EHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRP 242
             H   ++  + L + L +    G+  +GL   ++  PL++    ++  L+LG E +G+ P
Sbjct: 1438 MHFDIVKPEDELVEYLVRKRREGYTIVGLEQTAESVPLQEYTFPERTVLVLGEERRGISP 1497

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            K          +   G+ ++LNV  +AA+A+Y 
Sbjct: 1498 KVLAVIDRCVEIPQFGVTRSLNVHVSAAIAIYA 1530


>gi|283457160|ref|YP_003361728.1| rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283133143|dbj|BAI63908.1| rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 253

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 9/155 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++     NIG ++R+A A     +    R          + A     + 
Sbjct: 98  DTRRHDFHVAIENWQHDLNIGTVVRTANAMLAKEVHIIGRR-----RWNRRGAMVTDRYQ 152

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                  + D +      G + IG+    DS  PLE      K  L+ G EG GL  +  
Sbjct: 153 HVRHHPTIEDFVAWAQGEGLEIIGIDIFPDS-VPLETYDLPKKCVLVFGQEGPGLSEELH 211

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
             A     +   G  +++N + AA +A++   + H
Sbjct: 212 AAARDTLSIEQFGSTRSMNAATAAGIAMHAWVRRH 246


>gi|42523135|ref|NP_968515.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39575340|emb|CAE79508.1| 23S rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 251

 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 24/251 (9%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP- 88
           +++    +  +R   +     L G   +   L NP+ +I   +  ++  +       L  
Sbjct: 12  FRRWSDLS-SARGIKKHSEFILMGEKLIEEFLENPNFRIKGEIVHEDLKSVTMTAPKLKG 70

Query: 89  HPFPVKTVPPQTIDKI--VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHN 146
              PV  +P    ++I  VG         L   P     L   +   L ++   + DP N
Sbjct: 71  QRIPVFKLPKALFNEIDVVGTHYN----LLVLEPKEIAPLTTAKAEGLEVI-SPLGDPSN 125

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG 206
           +GA+ RS++AF    +I T+           K+++GAL  +P  +I    D +    S  
Sbjct: 126 LGALARSSLAFGASKMILTEESCSPYHPKAIKASAGALLKLPLFKIGKFADFV----SNN 181

Query: 207 FQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLR--PKTQETATSMAHLHMPGIIKAL 263
            Q   L    +     +  KN +IAL  G EG G       Q  + +         +++L
Sbjct: 182 DQIYALDMKGESVANFKWPKNVRIAL--GEEGPGFSGIKNLQRLSVATQS------VESL 233

Query: 264 NVSNAAAVALY 274
           N + A ++ALY
Sbjct: 234 NATVAGSIALY 244


>gi|325192103|emb|CCA26564.1| SpoU rRNA Methylase family putative [Albugo laibachii Nc14]
          Length = 1716

 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 65/156 (41%), Gaps = 5/156 (3%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP- 188
            ++++++M    ++   N+  + R+   F  + ++ +   +    A     +S A + I  
Sbjct: 1553 KSNRVIMCASLIDKVTNLAGLARTCEIFGAEKLVVSNLNTIKNDATFVSMSSSAHKWIKM 1612

Query: 189  --YIRISNLTDALQKMHS-WGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKT 244
                R  +L DA+        +  IGL   S+     +    DK  +ILG+EG G+  + 
Sbjct: 1613 EQISRGESLIDAIHHWKEVEKYHIIGLEQTSRSQCCSKYRFPDKAVIILGSEGAGIPVEI 1672

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                     +   G++++LNV  + A+ L+      
Sbjct: 1673 LRLVDVCVEIPQFGLVRSLNVHVSGAILLWEYTRQR 1708


>gi|289705731|ref|ZP_06502115.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
 gi|289557571|gb|EFD50878.1| RNA methyltransferase, TrmH family [Micrococcus luteus SK58]
          Length = 256

 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 8/160 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R     + +++     NIG ++R+A AF+  G+    R          + A   
Sbjct: 84  ADLDA-RRHPFHVAIENWQHDLNIGTVVRTANAFNAAGVHIIGRR-----RWNRRGAMVT 137

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++       +    +     G   +G+       P+E         L+ G EG GL  
Sbjct: 138 DRYLHVHHHETVEAFTEWAAGEGLPVLGVDLFPESVPVETFDFPRACVLVFGQEGPGLSA 197

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
           + +  ++++  +   G  +++N   AA +A++   + H A
Sbjct: 198 EVRAASSAVLSIAQYGSTRSINAGVAAGIAMHAWIRQHAA 237


>gi|297624953|ref|YP_003706387.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297166133|gb|ADI15844.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 253

 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 10/228 (4%)

Query: 52  YGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVH 111
           +G       L +      +++A    L R    A        + +P +  D+ V +   H
Sbjct: 30  FGEFPTLELLTHRPEHALRVVAHTKGLGRRGVAAVRAR-CEARGLPFEVNDRAV-ERLSH 87

Query: 112 QG-LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           +G + L           A   + LL+V  + +D  N+G I+R+ + F    +        
Sbjct: 88  KGNVYLFGVFAKYAAPLARERNHLLLV--NPSDNGNVGTIVRTMLGFGVRDLALIAPAVD 145

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA 230
             +  + +++ GA   + +   ++L +  +  H+   +         K L +        
Sbjct: 146 LFNPHVVRASMGATFAVNFAYFASL-EVYRAAHAH--RLYPFMLGGAKRLGEVRFEAPYT 202

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L+ G EG GL    +        +    ++++LN++ A  VALY    
Sbjct: 203 LVFGPEGAGLPEAYRAF--ESVQIPQSPLVESLNLAVAVGVALYEAAR 248


>gi|74026148|ref|XP_829640.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70835026|gb|EAN80528.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 1716

 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 78/202 (38%), Gaps = 11/202 (5%)

Query: 88   PHPFPVKTVP---PQTIDKIVGKEAVHQGL----ALETAPLLSPTLDAVRNSQLLMVLDH 140
            P    V T      + +  + G E V +      + +    L P         ++++   
Sbjct: 1506 PEAVAVLTADTHISEGMSSVTGYENVQRKATPWWSSQLYDELHPRALKTERQPVIVIASL 1565

Query: 141  VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDA 198
            + +P N+  + R    F+ + ++ +   +  E      +A  +   +P+  +++  L+  
Sbjct: 1566 LQNPVNVAGLFRCGEVFAVEKVVVSDA-AVLEHPHFVAAARSSDLWLPWSAVQVKALSGY 1624

Query: 199  LQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
            L  +   G+  +G+  +    P+       +  ++LGAEG G+  +          +   
Sbjct: 1625 LSSLRQDGYTLVGIEQTAGSVPMSSYQFPKRAVIVLGAEGHGIPAQLLTVLDVCVEIPQY 1684

Query: 258  GIIKALNVSNAAAVALYITQNH 279
            G+I++LNV    ++ +Y     
Sbjct: 1685 GLIRSLNVHVTGSIVMYEYTRQ 1706


>gi|213965150|ref|ZP_03393348.1| spou rrna methylase family protein [Corynebacterium amycolatum
           SK46]
 gi|213952264|gb|EEB63648.1| spou rrna methylase family protein [Corynebacterium amycolatum
           SK46]
          Length = 223

 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF  + +    R          + A     +   
Sbjct: 70  RRHPLHIAIENFENDSNIGTVVRTANAFLVEAVHIVGR-----KRWNRRGAMVTDRYQHL 124

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +    +++ +          + +       P+E     ++  L+ G EG G+  + Q  A
Sbjct: 125 LHHETVSEVISWAREHDLAVVAVDNVPGSVPIETVELPERCLLLFGQEGPGVTEEAQRAA 184

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 185 DLTVSIAQFGSTRSINAGVAAGIAMHSWIRTH 216


>gi|261335662|emb|CBH18656.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
          Length = 1716

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 86/219 (39%), Gaps = 18/219 (8%)

Query: 68   IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGL----ALETAPLLS 123
            +F +  T+ A+A L  D ++             +  + G E V +      + +    L 
Sbjct: 1499 LFCVDYTREAVAVLTADTHISEG----------MSSVTGYENVQRKATPWWSSQLYDELH 1548

Query: 124  PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            P         ++++   + +P N+  + R    F+ + ++ +   +  E      +A  +
Sbjct: 1549 PRALKTERQPVIVIASLLQNPVNVAGLFRCGEVFAVEKVVVSDA-AVLEHPHFVAAARSS 1607

Query: 184  LEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGL 240
               +P+  +++  L+  L  +   G+  +G+  +    P+       +  ++LGAEG G+
Sbjct: 1608 DLWLPWSAVQVKALSGYLSSLRQDGYTLVGIEQTAGSVPMSSYQFPKRAVIVLGAEGHGI 1667

Query: 241  RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +          +   G+I++LNV    ++ +Y     
Sbjct: 1668 PAQLLTVLDVCVEIPQYGLIRSLNVHVTGSIVMYEYTRQ 1706


>gi|300742572|ref|ZP_07072593.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300381757|gb|EFJ78319.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 226

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 9/155 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++     NIG ++R+A AF    +    +          + A     + 
Sbjct: 72  DTRRHDFHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGK-----KRWNRRGAMVTDRYQ 126

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
                  + D +      G   IG+    DS  PLE         L+ G EG GL  +  
Sbjct: 127 HVRHHPTIEDFVAWAQGEGLDIIGIDIFPDS-VPLETYDLPKNCVLVFGQEGPGLSEEIH 185

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
             A     +   G  +++N + AA +A++   + H
Sbjct: 186 AAARDTLSIEQFGSTRSMNAATAAGIAMHAWVRRH 220


>gi|308502598|ref|XP_003113483.1| hypothetical protein CRE_26502 [Caenorhabditis remanei]
 gi|308263442|gb|EFP07395.1| hypothetical protein CRE_26502 [Caenorhabditis remanei]
          Length = 1229

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 4/154 (2%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIPYIR 191
             L++V   V+ P+N+G I R++  F  D ++        +S       +S   + I  ++
Sbjct: 1075 SLIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDSNFKALSMSSENWQKIEGVK 1134

Query: 192  ISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +NL + LQ + S G+  I     +   +    +   K  +++G E +G+          
Sbjct: 1135 PANLLEYLQGLRSQGYTVIAAEQTTDSVMMHNFVFPKKAVIVMGDEKEGVPVNLLRAVDQ 1194

Query: 251  MAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
               +   G  ++LNV   AA+ +  +  Q  FAK
Sbjct: 1195 TVEIKQVGHTRSLNVHVTAALMIAKFAEQVRFAK 1228


>gi|159113391|ref|XP_001706922.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803]
 gi|157435023|gb|EDO79248.1| TAR RNA loop binding protein, putative [Giardia lamblia ATCC 50803]
          Length = 1127

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 12/161 (7%)

Query: 129  VRNSQLLM---VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            +++S L++   +LD      N+G + R+A  F  D ++     S +        +  A  
Sbjct: 968  LKSSNLIINASLLDKTT---NLGGLARTAEVFGLDTLVL-GNTSFALDPSFKAMSMTADM 1023

Query: 186  HIPYIRIS--NLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRP 242
             +    +   NL   + +     +  + L   S+   L+      K  L+LG E KG   
Sbjct: 1024 WLNIEEVQPCNLVQWIAEKKKDDYSVVCLEQSSRSVYLQDADLPRKAVLVLGNERKGCPE 1083

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
            +          +   G I++LNV  + A+ +  +  Q+ F+
Sbjct: 1084 EILSLCDMTVEIQQLGNIRSLNVHVSCAIFVWKWACQHRFS 1124


>gi|307207954|gb|EFN85513.1| Probable methyltransferase TARBP1 [Harpegnathos saltator]
          Length = 1333

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 4/152 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            +  L++V   V+ P N+G I R+   F    ++        +       +  A + I  I
Sbjct: 1179 HEGLIVVASLVSRPPNLGGIARTCEIFGVKSLVIANLDCVKD-KDFQCLSVSAEKWINMI 1237

Query: 191  RIS--NLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +++   L   L +  S G+  +G    +    L +     K  L+LG E  G+       
Sbjct: 1238 QVTLHELQQYLLEKKSAGWSIVGAEQTANSINLLEAKFEKKTILVLGNEKDGIPANFIPL 1297

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   +   G+I++LNV  AAA+ ++   + 
Sbjct: 1298 FNTCVEIPQVGVIRSLNVHVAAAICIWQYASQ 1329


>gi|308176006|ref|YP_003915412.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307743469|emb|CBT74441.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 218

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 10/159 (6%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD  R     + +++     NIG ++RSA AF    +    R          + A   
Sbjct: 60  ADLDE-RRHDFHIAIENWQHDMNIGTVVRSANAFLAKEVHIIGRR-----RWNRRGAMVT 113

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLR 241
             +      + + + +      G   +G+    DS  PLE         L+ G EG GL 
Sbjct: 114 DRYQHVRHHATVEEFVAWAQEAGLTILGIDIFPDS-VPLETYDLPKNCVLVFGQEGPGLS 172

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           P+    A     +   G  +++N ++AA +A++   + H
Sbjct: 173 PEVHAAAKDTLSIEQFGSTRSINAASAAGIAMHAWVRRH 211


>gi|239916760|ref|YP_002956318.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|281414782|ref|ZP_06246524.1| rRNA methylase [Micrococcus luteus NCTC 2665]
 gi|239837967|gb|ACS29764.1| rRNA methylase [Micrococcus luteus NCTC 2665]
          Length = 234

 Score =  102 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R     + +++     NIG ++R+A AF+  G+    R          + A   
Sbjct: 69  ADLDA-RRHPFHVAIENWQHDLNIGTVVRTANAFNAAGVHIIGRR-----RWNRRGAMVT 122

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++       +          G   +G+       P+E         L+ G EG GL  
Sbjct: 123 DRYLHVRHHETVEAFTAWAAGEGLPVLGVDLFPESVPVETFDFPRACVLVFGQEGPGLSA 182

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
           + +  ++++  +   G  +++N   AA +A++   + H A
Sbjct: 183 EVRAASSAVLSIAQYGSTRSINAGVAAGIAMHAWIRQHAA 222


>gi|296394021|ref|YP_003658905.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181168|gb|ADG98074.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 221

 Score =  102 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 6/146 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     +V++++    NIG ++R+A AF    +    R          + A     +   
Sbjct: 68  RRHPFHVVIENLAHDANIGTVVRTANAFLAQAVHIVGRR-----RWNRRGAMVTDRYQHV 122

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +   +  +   +     + +  +   +P+E      + AL+ G EG GL P+ +  A
Sbjct: 123 HHHATPEEFARYAQAHHLAVVAVDNTHGAEPVETFALPRRCALLFGQEGSGLSPELRAIA 182

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
            S   +   G  +++NV  AA V ++
Sbjct: 183 QSAVAIAQFGSTRSINVGVAAGVVMH 208


>gi|301096902|ref|XP_002897547.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107007|gb|EEY65059.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 769

 Score =  102 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 604 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 663

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 664 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 723

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 724 LQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 760


>gi|301096906|ref|XP_002897549.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107009|gb|EEY65061.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 705

 Score =  102 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 540 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 599

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 600 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 659

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 660 LQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 696


>gi|313243076|emb|CBY39772.1| unnamed protein product [Oikopleura dioica]
          Length = 228

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 4/163 (2%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +    +D      L++    ++  +N+G I R+A  F  + +  +   S  +S      A
Sbjct: 66  IQDSVIDKKSCEGLVICASLIDKANNLGGITRTAEVFGAESLAISNL-SILKSKDYTSLA 124

Query: 181 SGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237
             A++ I    +   NL   L  M   G+   GL  + +   +E+     K  ++LG E 
Sbjct: 125 VTAMKWIDIQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNER 184

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+          +  +   GII++LNV  +AA++++     F
Sbjct: 185 EGIPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTRGF 227


>gi|313237882|emb|CBY13012.1| unnamed protein product [Oikopleura dioica]
          Length = 643

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 4/163 (2%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           +    +D      L++    ++  +N+G I R+A  F  + +  +   S  +S      A
Sbjct: 481 IQDSVIDKKSCEGLVICASLIDKANNLGGITRTAEVFGAESLAISNL-SILKSKDYTSLA 539

Query: 181 SGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237
             A++ I    +   NL   L  M   G+   GL  + +   +E+     K  ++LG E 
Sbjct: 540 VTAMKWIDIQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGNER 599

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+          +  +   GII++LNV  +AA++++     F
Sbjct: 600 EGIPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTRGF 642


>gi|219117827|ref|XP_002179701.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408754|gb|EEC48687.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 169

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 11/164 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP- 188
           R  +L +V+ +++   NI A+L  A AF CD ++   +     S           EH+  
Sbjct: 2   RIPKLYLVITNISKRPNIRALLELAAAFGCDKVLVVGQQKFDISPKGTDIPRSIREHVER 61

Query: 189 ----YIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPK 243
                 R S+    +  + S G + +G+      +P+E  +     A ++G EG+G+  K
Sbjct: 62  GGLHIERYSSWEACINFLSSHGIRLVGVEIHVDARPIEAYLDYKDTAFLMGNEGQGINEK 121

Query: 244 TQETATSMAHLHMP-GIIKALNVSNAAAVALY----ITQNHFAK 282
             ++  +   +    G   +LNV  AA++ L+      Q  F+K
Sbjct: 122 HMKSCDAFVTIPQYGGGTASLNVYVAASIVLHSFHQWQQGEFSK 165


>gi|167522701|ref|XP_001745688.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776037|gb|EDQ89659.1| predicted protein [Monosiga brevicollis MX1]
          Length = 549

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L++V     DPHN+G+I+R+A+AF  D I      +   +A   K+++G +    ++ 
Sbjct: 390 RRLVVVAA--QDPHNVGSIVRTALAFGADAICVWDGAAQPLTAATIKASAGHVFAGRFLS 447

Query: 192 ISNLTDALQKMHSWGFQ-TIGLSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPK 243
            + +  A +   S     T+  ++++  P       LE      +  L+LG E +G+   
Sbjct: 448 PTEVLRAARSTASEVAPSTLWTAAEAHAPSSWSHRQLEDVAWPHRRVLVLGHETRGVPRD 507

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            Q       H+ +   +++L+V+ AAA+  
Sbjct: 508 LQPFC-QPVHIAIHPGVESLSVAAAAAILC 536


>gi|301096890|ref|XP_002897541.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107001|gb|EEY65053.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 647

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 482 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 541

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 542 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 601

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 602 LQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 638


>gi|301096900|ref|XP_002897546.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107006|gb|EEY65058.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 516 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 575

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 576 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 635

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 636 LQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 672


>gi|328708118|ref|XP_003243604.1| PREDICTED: hypothetical protein LOC100571270 [Acyrthosiphon pisum]
          Length = 1388

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 116  LETAPLLSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
             +   + S  LD  +    L++V   ++   N+G + R+   F    ++        E  
Sbjct: 1215 AQRKYIPSQPLDEHKTKSMLIVVASLIDKVTNLGGLARTCQVFGASTLVVDNLSCV-EKK 1273

Query: 175  VLAKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIA 230
                 +  A +H   I +   NL   LQK    G+Q +    + DS K L +     K  
Sbjct: 1274 EFTALSMTAEKHQSIIEVRLKNLKSYLQKKKIEGYQIVAAEQTVDSVK-LHEMNLPFKCV 1332

Query: 231  LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG E  G+      T      +   GI+++LNV  A ++ ++     
Sbjct: 1333 LLLGNETSGIPHDLLSTMDICVEIKQLGIVRSLNVHVAGSLFIWEYTKQ 1381


>gi|300780369|ref|ZP_07090225.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300534479|gb|EFK55538.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 223

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 65/170 (38%), Gaps = 13/170 (7%)

Query: 118 TAPLLSPTLDAVRNS------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                  +L+A+R           + +++  +  NIG ++R+A AF  + +    R    
Sbjct: 52  VDAYRYWSLEAIREDLDQRRHPFHVAIENFENDMNIGTVVRTANAFMAEAVHIVGR---- 107

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIA 230
                 + A     +   I    + D L+   + G   + +  +    PLE         
Sbjct: 108 -KRWNRRGAMVTDRYQHIIHHETVDDLLEWATARGVAVVAIDNTPGSVPLETAELPRDCV 166

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           L+ G EG G+  + Q+ A     +   G  +++N   AA +A++   + H
Sbjct: 167 LLFGQEGPGVTAEAQQAAVMTCSIAQFGSTRSINAGVAAGIAMHTWIRQH 216


>gi|301095544|ref|XP_002896872.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108622|gb|EEY66674.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 516 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 575

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 576 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 635

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 636 LQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 672


>gi|323358259|ref|YP_004224655.1| rRNA methylase [Microbacterium testaceum StLB037]
 gi|323274630|dbj|BAJ74775.1| rRNA methylase [Microbacterium testaceum StLB037]
          Length = 227

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 7/159 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R+    + +++     NIG+I+RSA AF    +    +          + A   
Sbjct: 75  ADLDAKRH-PFHVAIENWQHDLNIGSIVRSANAFLAAEVHIIGKR-----RWNRRGAMVT 128

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             +       ++          G   I +   +   P+ +    +   L+ G EG GL P
Sbjct: 129 DRYQHVRHHEDVETFTAWARGSGLPVIAIDNVEGSVPVNRAELPEACVLLFGQEGPGLSP 188

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +    A+++  +   G  +++N ++AAAV +Y     +A
Sbjct: 189 EALAAASAVVEITQYGSTRSINAASAAAVVMYEWCRRWA 227


>gi|301096904|ref|XP_002897548.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107008|gb|EEY65060.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 516 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 575

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 576 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 635

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 636 LQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 672


>gi|227494335|ref|ZP_03924651.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226832069|gb|EEH64452.1| tRNA/rRNA methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 210

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 7/154 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + ++++    NIG+I+R+A A     +    R          + A     ++  
Sbjct: 62  RGKWLEVAIENLGHDFNIGSIVRTANAMGVRHVHIVGRR-----RWNRRGAMVTDRYMQV 116

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++      M   G + +G+ + +   PLE+ +      +++G E  GL P+    +
Sbjct: 117 HHHPDVESFQAAMQEAGMRIVGVDNIERSVPLEETVLPLNCVMVMGEESTGLSPEMAAIS 176

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
             + H+   G  +++NV +AAA++++     H A
Sbjct: 177 EEIVHITQYGSTRSMNVGHAAAISMWAWVLQHRA 210


>gi|318057501|ref|ZP_07976224.1| rRNA methylase [Streptomyces sp. SA3_actG]
 gi|318080806|ref|ZP_07988138.1| rRNA methylase [Streptomyces sp. SA3_actF]
          Length = 266

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 13/229 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA--NLPHPFPVKTVP-PQTIDKIV 105
           + L G H +  AL   +     +   + A   L  +   +L        VP P  + + +
Sbjct: 39  VLLDGFHALKHALRFGADVPLAVAEDRAAALALADELAPDLAPRLAELLVPVPPALYRSL 98

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT 165
                  G+A       +P     R S L +VLD   +  N GA++R A  F   G++TT
Sbjct: 99  VPRPHPTGVAALAGRPPAPGFAGPRTSPL-LVLDEPRNLGNAGAVIRLAAGFGASGVVTT 157

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK 225
                     + ++ +G     P  R      A+ ++ +         ++ +      + 
Sbjct: 158 GDL-DLWHPAVVRAGAGLHFATPVAR-----RAVPELPAGPLW--AFDAEGEDLRGVRVP 209

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +D + L  G+E  GL    +E A  +  L M   + + N++ +  +ALY
Sbjct: 210 DDAL-LAFGSERHGLTAAVRERADRLVALPMRPHVSSYNLATSVGMALY 257


>gi|227834128|ref|YP_002835835.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227455144|gb|ACP33897.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 247

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +D  R++ L + +++  +  NIG ++R+A AF+ D +    R          
Sbjct: 83  TREAIREDIDKRRHA-LHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRR-----RWNR 136

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +   +  +++++ +          + +  +    PLE     ++  L+ G E
Sbjct: 137 RGAMVTDRYQHLMHHTDVSELMAWAADQDLTVVAIDNTPGCVPLETAELPERCLLLFGQE 196

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+ P+ Q+ A     +   G  +++N   AA +A++   + H
Sbjct: 197 GPGVSPEAQDAAVMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 240


>gi|124802753|ref|XP_001347584.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|23495166|gb|AAN35497.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 257

 Score =  102 bits (254), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 14/154 (9%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D+    +  +V+ ++    N+G I+RS VAF+   I    +    +  +      G  ++
Sbjct: 46  DSYEKIKTYVVIYNIGKKKNVGCIVRSCVAFNVHKIFIVGKR---KKEINFFGNMGTYDY 102

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS------SDSKKPLEQEIKNDKIALILGAEGKGL 240
           I      N+ +  + +                 S +  P E +      A + G EG G+
Sbjct: 103 ITIEYFDNIYELKEYLTKHDILLYACEISVNALSITTNPYEHKD----TAFLFGNEGTGI 158

Query: 241 RPKTQETATSMAHLHMPG-IIKALNVSNAAAVAL 273
                +    + ++   G    +LNVS + A+ L
Sbjct: 159 HDNVLKICDKIIYIPQYGKGTASLNVSVSCAIIL 192


>gi|291533010|emb|CBL06123.1| rRNA methylases [Megamonas hypermegale ART12/1]
          Length = 70

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            D  +          + L++G+EG+G+   T+     +  + M G + +LN SNAAA+  
Sbjct: 1   MDGTENYYDANMTGPLVLVIGSEGRGVSRLTKNACDFIVKIPMRGKVNSLNASNAAAILA 60

Query: 274 YITQNHF 280
           Y      
Sbjct: 61  YEVLKQR 67


>gi|170051070|ref|XP_001861598.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167872475|gb|EDS35858.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1272

 Score =  102 bits (254), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 4/157 (2%)

Query: 126  LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            L   +   L++V   V+   N+G + RS+  F     +        ES      +  A +
Sbjct: 1109 LRKAKEDGLIVVASLVDRAPNLGGLARSSEIFGVRQYVVGSLKDV-ESKEFQALSMTAEK 1167

Query: 186  HIPYIRISN--LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             +    + +  L D L++M + G+  +G   +   +P++Q     +  L+LG E +GL  
Sbjct: 1168 WLNVAELKSFQLVDYLREMKAKGYAIVGAEQTTGSRPIQQIQFPARAVLVLGHEKEGLPA 1227

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    +A +   G++++LNV    A+ ++     
Sbjct: 1228 HIISQLDIVAEIPQFGVVRSLNVHVTGAIFMWEYARQ 1264


>gi|301096908|ref|XP_002897550.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107010|gb|EEY65062.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 1346

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 1181 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 1240

Query: 190  IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
              +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 1241 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 1300

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
             +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 1301 LQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 1337


>gi|224076560|ref|XP_002196211.1| PREDICTED: similar to MGC84529 protein [Taeniopygia guttata]
          Length = 323

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 4/178 (2%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARL-D 82
           R    D +K+ +  +  +       + L G   +  AL   +       +T   L  L +
Sbjct: 94  RHKQEDGRKVVTIAKSKKFRDNHGKVLLEGHRLIKDALEAGAVPQTLFFSTVGHLKLLPE 153

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP--LLSPTLDAVRNSQLLMVLDH 140
            +        VK    +T   +V  + +  G+  +  P  +  P      +  LL++ D+
Sbjct: 154 AEIKRASLVKVKFEDIKTWSDLVTPQGL-LGIFSKPDPAKMSYPAAQLANSLPLLLICDN 212

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + DP N+G ILRSA    C+ ++ TK         + ++  GA   +P I   +    
Sbjct: 213 IRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIIANLDWESV 270



 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA----TSMAHLHMPGIIKALNVSNAAAV 271
           + +   ++     +A+++G E  GL P     A         + +   + +LN + AA +
Sbjct: 23  AAQHYYEDWARAPVAVVVGGETHGLSPAALGLAASTGGKRLLIPVVPGVDSLNSAIAAGI 82

Query: 272 ALYITQNHF 280
            L+  +   
Sbjct: 83  VLFEGKRQL 91


>gi|71403879|ref|XP_804694.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70867801|gb|EAN82843.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 299

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 5/165 (3%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
            L    L   +   L+++   + +P N+  + R    F+ + ++ + + +         +
Sbjct: 132 ELHPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFAIEKVVVSDQ-AVFAHPHFVAA 190

Query: 180 ASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           A  A   +P+  +   NL + L  +   G+  IG+  +     +      ++ A++LGAE
Sbjct: 191 ARSAELWMPWDAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSIASYRFPERAAILLGAE 250

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
           G G+  +          +   G+I++LNV    A+ +Y  T+ H 
Sbjct: 251 GHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHL 295


>gi|77024970|gb|ABA61397.1| rRNA methylase [uncultured marine group II euryarchaeote
           HF70_59C08]
          Length = 234

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 15/225 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           G+  + A+L+        L   +    RL    D  +     V       + ++  K   
Sbjct: 7   GIDAIEASLDAGEDITLVLALKECDDPRLIALLDRCMDAGIDVSFGSENDLWRMAEKSPA 66

Query: 111 HQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                          LD  +    L+ +L  V    N+G  +R A      G+I T  ++
Sbjct: 67  --LALALVGREPVADLDTMLERGGLIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWT 124

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             +   + ++A      +P +      D L+ + SW  + + +     +          +
Sbjct: 125 SDDRHRIVRAAMRTNRFMPVVFGC---DELEALKSWKGRVLAIEDVGTEEPWDADLTGDV 181

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-------VSN 267
            LI+G E  G+  +  E A     + M G   + N       V+ 
Sbjct: 182 ILIIGGENAGVSKELLEVADQTIRIPMAGFTPSYNLQAPMAVVAV 226


>gi|239980742|ref|ZP_04703266.1| rRNA methylase [Streptomyces albus J1074]
 gi|291452600|ref|ZP_06591990.1| rRNA methyltransferase [Streptomyces albus J1074]
 gi|291355549|gb|EFE82451.1| rRNA methyltransferase [Streptomyces albus J1074]
          Length = 261

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 81/237 (34%), Gaps = 19/237 (8%)

Query: 46  PENLFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVPPQTI 101
           P  + L G H +  AL   +     L     A     A L  D        +  V  +T+
Sbjct: 25  PRYVLLEGFHALKHALRFGAVVPVALCADRAAALQLAAELAPDLEGALAGLLVEVDAETL 84

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL--LMVLDHVNDPHNIGAILRSAVAFSC 159
             +V +       AL   P       A+R ++   ++VLD      N GA++R A  F  
Sbjct: 85  RGLVARPHPTGVAALAERPAPLAVEAALRGARRTPVVVLDQPRHLGNAGAVVRLAAGFGA 144

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYI--RISNLTDALQKMHSWGFQTIGLSSDSK 217
            G++TT          + +  +G           +  L                L  +  
Sbjct: 145 SGVVTTGPL-DPWHPTVVRGGAGLHFATAVAPLEVPELPAG---------PLFALDPEGA 194

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                 + +D + L  G+E  GL  + +  A  +  L M   + + N++ +  + L+
Sbjct: 195 DIRGLTLPDDAL-LAFGSERHGLTAELRARADHLVALPMRPQVSSYNLATSVGMTLF 250


>gi|330862873|emb|CBX73011.1| uncharacterized tRNA/rRNA methyltransferase yfiF [Yersinia
           enterocolitica W22703]
          Length = 293

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 14/178 (7%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 118 RRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEED 177

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVRN----------SQLLMVLDHVNDPHNIGA 149
            + K  G E  H G+            +                 ++ L+ V +PHN+G 
Sbjct: 178 ELAKASGTE-HHGGVCFLIKKRQGLDAETYLQQQTQAKDGIVKDCVLALEDVGNPHNLGG 236

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           I+R+   F  +G++     +  ES    ++A G  EHI  I   +    L      G+
Sbjct: 237 IMRTCAHFGINGVLLQDP-AMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGY 293


>gi|213583507|ref|ZP_03365333.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 119

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE 223
             +  +  ES    ++A G  EH+  I   ++ D L      G+  +  SSD  + L   
Sbjct: 1   MVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQALFST 60

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              +K+ L+LG E   L    +E       ++  G +++LNVS A  V L  +  QN
Sbjct: 61  TLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQN 117


>gi|307183316|gb|EFN70185.1| Probable methyltransferase TARBP1 [Camponotus floridanus]
          Length = 325

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L++V   +N P N+G I R+   F    ++        +       +  A   I  +
Sbjct: 166 KEGLIVVASFINRPPNLGGIARTCEIFGVKALVIANL-DYIKDKEFQCLSVSAERWINIL 224

Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           ++    L   L +  + G+  IG    +    L Q     K  L+LG E  G+       
Sbjct: 225 QVKPHELQKYLFEKKNAGWSLIGAEQTANSINLLQTKFEKKTILVLGNEKDGIPANFIPL 284

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYI-----TQNHFAK 282
             +   +   G+I++LNV   AA+ ++      T   F++
Sbjct: 285 FDTCVEIPQVGVIRSLNVHVTAAICIWQYASQHTLRQFSQ 324


>gi|262183385|ref|ZP_06042806.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 224

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +D  R++ L + +++  +  NIG ++R+A AF+ D +    R          
Sbjct: 60  TREAIREDIDKRRHA-LHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRR-----RWNR 113

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +   +  +++++ +          + +  +    PLE     ++  L+ G E
Sbjct: 114 RGAMVTDRYQHLMHHTDVSELMAWAADQDLTVVAIDNTPGCVPLETAELPERCLLLFGQE 173

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+ P+ Q+ A     +   G  +++N   AA +A++   + H
Sbjct: 174 GPGVSPEAQDAAVMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 217


>gi|1022801|gb|AAA79704.1| OBP33pep [Arabidopsis thaliana]
          Length = 210

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW- 205
           +G + RSA AF    +I   R   +        + G+  HI +    +L +A   +    
Sbjct: 7   VGTLARSATAFGVTELILVGRRDFNAFG-----SHGSASHIRFRHFHSLIEARNYLKEEK 61

Query: 206 -----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-I 259
                G +     +D    + +       A +LG EG GL  K  E      ++   G  
Sbjct: 62  DCDICGVEI----ADGASAVNEHPFKRNTAFLLGNEGSGLSAKEYEICDFFVYIPQYGCG 117

Query: 260 IKALNVSNAAAVALYITQNHFA 281
             +LNV+ AA++ L+    HF 
Sbjct: 118 TASLNVTVAASIVLH----HFG 135


>gi|83999870|emb|CAI59983.1| putative tRNA/mRNA methyltransferase [Streptomyces tenjimariensis]
          Length = 164

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 6/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  +L++V   +    N+ +I+R+A       +I     +     +  K A    +H+  
Sbjct: 15  QERELVIVCAPLRTKANLSSIVRTAGCCGVKRVIACGSAA-----IDRKVARDGADHVEL 69

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                L   L+K+ + G++ + L  + +   L       K AL++G E  GL  +  +  
Sbjct: 70  ELRRTLAPVLKKLSAEGYRLVALEQTSNSTSLHDFAFPRKTALVIGNERTGLDDEELKLV 129

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + + G+  + NV+ A A+A+Y     +
Sbjct: 130 DDCTEIPVWGMPHSYNVATATAMAMYEYCKQY 161


>gi|294945420|ref|XP_002784671.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239897856|gb|EER16467.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 222

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +++ +V    N G +LRSA AF    +            +      G   H  +     +
Sbjct: 17  LLICNVGKRQNWGQLLRSATAFGVTEVFVVGAK--KMKELALFGNQGTTLHATFEFFDTI 74

Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            +A +++   G    G+    S +P++          +LG EG G+  K         ++
Sbjct: 75  AEAKEELKRRGITLCGVEIHPSSEPIQDMHWRGDTCFMLGNEGTGMTDKQIAACDQFTYI 134

Query: 255 HMPGIIK-ALNVSNAAAVALYITQNHFA 281
                   +LNV+ A ++ L+    HFA
Sbjct: 135 QQYTKATASLNVAVAGSIVLH----HFA 158


>gi|313246736|emb|CBY35609.1| unnamed protein product [Oikopleura dioica]
          Length = 1335

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 15/223 (6%)

Query: 62   NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA--VHQGLALETA 119
             N +   F+ L+ +  + R            +     + +D +   E   V Q    +  
Sbjct: 1119 KNATSSCFKFLSFETEIDRFYKLKTSKEDDKI----SRDLDDLSLDEPTNVQQ----KIT 1170

Query: 120  PLLSPTL-DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            P +  +L D      L++    ++  +N+G I R+A  F  + +  +   S  +S     
Sbjct: 1171 PWIQDSLIDKKSCEGLVICASLIDKANNLGGITRTAEVFGAESLAISNL-SILKSKDYTS 1229

Query: 179  SASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGA 235
             A  A++ I    +   NL   L  M   G+   GL  + +   +E+     K  ++LG 
Sbjct: 1230 LAVTAMKWIDIQEVKAINLQKWLLSMKMKGYCLAGLEQTTNSISIEKFDFPKKCVVVLGN 1289

Query: 236  EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E +G+          +  +   GII++LNV  +AA++++    
Sbjct: 1290 EREGIPTNIISLLDVVLEIPQKGIIRSLNVHVSAAISIWEYTR 1332


>gi|221503013|gb|EEE28723.1| RNA methylase, putative [Toxoplasma gondii VEG]
          Length = 2898

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGAL 184
            +  +   L++V   ++   N+  + R+   F    ++       S  +   +  S   A 
Sbjct: 2739 ELRQRGDLVVVASLIDKVPNLAGLARTCEVFDAKKLVIHNLDILSDPQFNTIGVS---AH 2795

Query: 185  EHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLR 241
              +P  ++   ++   L  + + G+  +G+  + S + LE    + K AL+LGAE +GL 
Sbjct: 2796 RWLPIEQVSADDVARYLLDLKTQGYTVVGVEQTGSSQMLENARFDRKTALVLGAEKEGLP 2855

Query: 242  PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    +   +   G+I++LNV   AA+ ++     
Sbjct: 2856 AALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYTKQ 2893


>gi|330465613|ref|YP_004403356.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
 gi|328808584|gb|AEB42756.1| tRNA/rRNA methyltransferase [Verrucosispora maris AB-18-032]
          Length = 207

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +R     + +++     NIG ++R+A AF    +    R          + A     + 
Sbjct: 53  DLRRHDFHVAIENWQHDMNIGTVVRNANAFLAAEVHIVGRR-----RWNRRGAMVTDRYQ 107

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++ D +          +G+      +PLE      +  L+ G EG GL    + 
Sbjct: 108 HVRHHESIDDFVAWAGQHDLPLVGIDNLPGSRPLESSTLPRRCVLLFGQEGPGLSDAARA 167

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
               +  +   G  +++N   A+ +A++   + H
Sbjct: 168 ACDQLFSIAQYGSTRSINAGVASGIAMHAWIRAH 201


>gi|301095550|ref|XP_002896875.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108625|gb|EEY66677.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 486

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 321 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPSLRMTQQDVTFVNVSATAHKWMPL 380

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 381 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 440

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 441 LQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 477


>gi|77024987|gb|ABA61413.1| rRNA methylase [uncultured marine group II euryarchaeote
           HF70_39H11]
          Length = 232

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 15/225 (6%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVGKEAV 110
           G+  + A+L+        L   +    RL    D  +     V       + ++   E  
Sbjct: 5   GIDAIEASLDAGEDITLVLALKECDDPRLIALLDRCMDAGIDVSFGSENDLWRMA--ETS 62

Query: 111 HQGLALETAPLLSPTLDA-VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
                          +D  +    L+ +L  V    N+G  +R A      G+I T  ++
Sbjct: 63  PALALALVGREPVADIDTMLERGGLIWMLAGVQYQTNVGFCIRVAEVSGASGLIVTGEWT 122

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
             +   + ++A      +P +      D L  + SW  + + +     +          +
Sbjct: 123 SDDRHRIIRAAMRTNRFMPVVFGC---DELAALKSWKGRVLAIEDVGTEEPWDADLTGDV 179

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-------VSN 267
            LI+G E  G+  +  E A     + M G   + N       V+ 
Sbjct: 180 ILIIGGENAGVSKELLEAADQTIRIPMAGFTPSYNLQAPMAVVAV 224


>gi|221485609|gb|EEE23890.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 2905

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGAL 184
            +  +   L++V   ++   N+  + R+   F    ++       S  +   +  S   A 
Sbjct: 2746 ELRQRGDLVVVASLIDKVPNLAGLARTCEVFDAKKLVIHNLDILSDPQFNTIGVS---AH 2802

Query: 185  EHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLR 241
              +P  ++   ++   L  + + G+  +G+  + S + LE    + K AL+LGAE +GL 
Sbjct: 2803 RWLPIEQVSADDVARYLLDLKTQGYTVVGVEQTGSSQMLENARFDRKTALVLGAEKEGLP 2862

Query: 242  PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    +   +   G+I++LNV   AA+ ++     
Sbjct: 2863 AALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYTKQ 2900


>gi|237842689|ref|XP_002370642.1| RNA methyltransferase, TrmH family domain-containing protein
            [Toxoplasma gondii ME49]
 gi|211968306|gb|EEB03502.1| RNA methyltransferase, TrmH family domain-containing protein
            [Toxoplasma gondii ME49]
          Length = 2899

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKSASGAL 184
            +  +   L++V   ++   N+  + R+   F    ++       S  +   +  S   A 
Sbjct: 2740 ELRQRGDLVVVASLIDKVPNLAGLARTCEVFDAKKLVIHNLDILSDPQFNTIGVS---AH 2796

Query: 185  EHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLR 241
              +P  ++   ++   L  + + G+  +G+  + S + LE    + K AL+LGAE +GL 
Sbjct: 2797 RWLPIEQVSADDVARYLLDLKTQGYTVVGVEQTGSSQMLENARFDRKTALVLGAEKEGLP 2856

Query: 242  PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    +   +   G+I++LNV   AA+ ++     
Sbjct: 2857 AALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYTKQ 2894


>gi|290958962|ref|YP_003490144.1| rRNA methylase [Streptomyces scabiei 87.22]
 gi|260648488|emb|CBG71599.1| putative rRNA methylase [Streptomyces scabiei 87.22]
          Length = 256

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 86/235 (36%), Gaps = 20/235 (8%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQL----LATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + L G H +  A+   +     +     A       L  D        ++ VP +T   +
Sbjct: 26  VLLDGFHALKHAVRFGAEVSVAVTADRAAALALADELAPDVRDRLGDLLQEVPEETYRAL 85

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSAVAFSCDG 161
           V +       AL   P  +  L A+  +     ++VLD+  +  N GA++R A  F   G
Sbjct: 86  VPRPHPTAVAALAVRPARADHLAALARTPRAAPVVVLDNPRNLGNAGAVIRLAAGFGATG 145

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTIGLSSDSKKP 219
           ++TT          + +  +G        R  +++L                L  +    
Sbjct: 146 VVTTG-TLDPWHPTVVRGGAGLHFATAVERLEVADLPPG---------PLFALDPEGDDI 195

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
              ++ +D + L  G+E  GL    +  A  +  L M   + + N++ + A+ LY
Sbjct: 196 RGLKLPDDAV-LAFGSERSGLSAGLRARADHLLSLPMRPQVSSYNLATSVAMTLY 249


>gi|320104128|ref|YP_004179719.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
 gi|319751410|gb|ADV63170.1| methyltransferase GidB [Isosphaera pallida ATCC 43644]
          Length = 505

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 88/259 (33%), Gaps = 15/259 (5%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
           R ++  +K  ++   K     +     + G   V+  L          +      A  + 
Sbjct: 247 RPHNATFKDWRTL-LKGSGLRKRGEALVAGRRIVAEMLACRPELALGWVTGPQGPAPPE- 304

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
               P       +    + ++         L +    +              +VL    D
Sbjct: 305 ---RPAGLTWWRLTKPLLAELDLFGTGGPLLWIRLPDIPQYDPHEAWPEGCTLVLP-FQD 360

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIGA LRSA+AF    +I T+  +        ++   A   +       L D   +  
Sbjct: 361 PENIGAALRSALAFGVGRVILTREAAHPFHPKALRAGGPAAARLELRFGPALADLCGR-E 419

Query: 204 SWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMA---HLHMPGI 259
            +    + L  D   P L+Q     + ALI G EG GL       AT+      + M   
Sbjct: 420 QFAVPRLALDRDPASPRLDQADWPARFALIAGLEGPGL----AGIATNWLQRRRIPMSPR 475

Query: 260 IKALNVSNAAAVALYITQN 278
           I++LN + + AVALY  + 
Sbjct: 476 IESLNAAVSVAVALYEWRR 494


>gi|290994023|ref|XP_002679632.1| predicted protein [Naegleria gruberi]
 gi|284093249|gb|EFC46888.1| predicted protein [Naegleria gruberi]
          Length = 209

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 4/156 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   ++++   ++   N+  + R+   FS + ++        E       +  A   IP 
Sbjct: 53  KRQSIIVIASLIDKIPNLAGLARTCEIFSAEKLVLPHMNVV-EMEEFKSISVSAEHWIPV 111

Query: 190 IRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                + L   L +    G+  +GL  + +   L      ++  + LG E +G+ P+   
Sbjct: 112 EACPPTELAQYLSQKRQEGYTIVGLEQTSTSVMLPDYEFPERCCICLGNEKEGMPPELLS 171

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +   +   G++++LNV  +A++ +Y     F +
Sbjct: 172 LMDTCVEIPQLGVLRSLNVHVSASIMIYRYTEQFLR 207


>gi|328865936|gb|EGG14322.1| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium
            fasciculatum]
          Length = 1689

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 65/157 (41%), Gaps = 5/157 (3%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +  ++++V   V +  NI  ++R+   F+   +               + +  A + +P 
Sbjct: 1519 QRQEMIVVATFVENTPNIAGLIRTCEIFNVTEVAIPNLK-LLNDPQFQRVSVSADKWVPI 1577

Query: 190  IRI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            +++  +NL   L +    G+  IG+   S  K L   +   K  L+LG E  G+      
Sbjct: 1578 VQVARTNLQAYLIRKKEEGYAIIGVEQTSQSKSLSTFVFPTKCLLLLGQEQNGIPSDFLN 1637

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
                   +   GII++LNV  + ++ L+  +Q    K
Sbjct: 1638 LVDYCVEIPQFGIIRSLNVHVSGSIVLWEYSQQQILK 1674


>gi|219126900|ref|XP_002183685.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404922|gb|EEC44867.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 489

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 56/200 (28%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR---------------------- 167
           R S + +V++   + HN  AILR+A A     +                           
Sbjct: 109 RTSSITIVVERCTNDHNYSAILRTAEALGIQNVWIIDPPQLMDGTGVGSVDDNNREEGSN 168

Query: 168 ----------YSPSESAVLAKS---------------ASGALEHIPYIRISNLTDALQKM 202
                      S      L K                A  A E I     ++    L ++
Sbjct: 169 DGNSESRKLPTSAHPGRPLLKVLSEQEMEQRAQHRLFAQNATEWITLREFTDTASCLHEL 228

Query: 203 HSWGFQTIGLS-SDSKKPLEQEIKNDK--------IALILGAEGKGLRPKTQETATSMAH 253
            + G Q      S    PLE++   +         +A++ G E  G   +    A    +
Sbjct: 229 RATGHQIWATDLSQQAVPLEKDDLQEAGHWPLPNQLAIVFGTEAVGCSQEMLRHADLRVY 288

Query: 254 LHMPGIIKALNVSNAAAVAL 273
           L + G   +LN+S A A+ +
Sbjct: 289 LPLRGFADSLNLSVATALVI 308


>gi|67923250|ref|ZP_00516736.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
 gi|67854927|gb|EAM50200.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
          Length = 155

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      NL
Sbjct: 6   VVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYYENL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              +        + +G S   K    +    +   L+ G+E +GL  K +E    M ++ 
Sbjct: 66  EQFVSFQKQQEGRLLGFSVRGKSCYGECNFQENDWLVFGSETEGLPDKFREQCDQMLYIP 125

Query: 256 MPG-IIKALNVSNAAAVALYITQNHF 280
           MP   +++LN+S + A+ L+      
Sbjct: 126 MPHPQVRSLNLSVSVAIGLFEALRQL 151


>gi|213029238|ref|ZP_03343685.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 113

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEHIPYIRI 192
           L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   +     
Sbjct: 3   LTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSWVQVKTH 59

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             + DA+  +   G Q +    SD      +        +++G E  G+  +  
Sbjct: 60  RTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRPTCILMGQEKTGITQEAL 113


>gi|313675966|ref|YP_004053962.1| tRNA/rRNA methyltransferase (spou) [Marivirga tractuosa DSM 4126]
 gi|312942664|gb|ADR21854.1| tRNA/rRNA methyltransferase (SpoU) [Marivirga tractuosa DSM 4126]
          Length = 170

 Score =  100 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 71/145 (48%), Gaps = 3/145 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           Q++++ +++  P N+G I+R + AF  + I     ++   +    +++    + + Y  +
Sbjct: 17  QIVLIAENIRTPENLGMIMRLSEAFGLEKIYFVGEHAIDLTTKAKRASRNTYKTMDYEFV 76

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETAT 249
            ++     ++   G+  I L  +   +P+     N   K+ LI+G+E +G+  +  +   
Sbjct: 77  VDVKKQFSQLLEVGYHAIALEITKFSEPIHNLRINNQKKVVLIIGSERQGISEELLQFCQ 136

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
           +  H+ M G   ++NV NA ++ L+
Sbjct: 137 NHYHIPMFGGNSSINVVNALSIGLF 161


>gi|255652983|ref|NP_001157404.1| RNA methyltransferase-like protein 1B [Danio rerio]
          Length = 449

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 12/207 (5%)

Query: 2   NLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAAL 61
            +I+     +   +    Y KL    +   K+       +       + L G H V +AL
Sbjct: 99  KVINLTSRTRFGEVDGLLYEKLHPGDKSLAKLARIAGSKKLR--EHQVVLEGKHLVCSAL 156

Query: 62  NNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---- 116
           +  +       ++ +AL  L  D     +   VK    Q   ++       Q +      
Sbjct: 157 DAGAEAQTLYFSSVDALRELPLDKLRQTNVVKVKMEDAQVWSEL----DTSQEIIAIFKR 212

Query: 117 -ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E + L        R   L ++ D V DP N+G++LRSA A  C  ++ TK         
Sbjct: 213 PEASRLTFSEEKYGRAVPLTLICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELK 272

Query: 176 LAKSASGALEHIPYIRISNLTDALQKM 202
           + ++A GA   +P I     TD    +
Sbjct: 273 VLRAAMGAHFRLPIIPNLTWTDISNHL 299



 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYI 275
              +      +LI+G E  GL  +  + A         + M   + +LN + AA V L+ 
Sbjct: 377 YYTDWVAGHTSLIIGGETHGLSREALQLAERTSGRRLLIPMVDGVDSLNSAIAAGVLLFE 436

Query: 276 TQNHF 280
            +   
Sbjct: 437 GRKQL 441


>gi|317507290|ref|ZP_07965033.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254419|gb|EFV13746.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 220

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     +V++++    NIG I+R+A AF  + +    R          + A     +   
Sbjct: 66  RRHPFHVVIENLAHDANIGTIVRTANAFLAEAVHIVGRR-----RWNRRGAMVTDRYQHV 120

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +            G   I +  +   +P+E      + AL+ G EG GL P+ + TA
Sbjct: 121 HHHATAQAFADYAAGRGLAVIAVDNTPGAEPMETFALPRRCALLFGQEGTGLSPELRGTA 180

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            S   +   G  +++NV  AA +A++   + H
Sbjct: 181 QSALAIAQFGSTRSINVGVAAGIAMHAWVRQH 212


>gi|71654093|ref|XP_815672.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880745|gb|EAN93821.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 1735

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 70/165 (42%), Gaps = 5/165 (3%)

Query: 120  PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
             L    L   +   L+++   + +P N+  + R    F+ + ++ + + +         +
Sbjct: 1568 ELHPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTVEKVVVSDQ-AVFAHPHFVAA 1626

Query: 180  ASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
            A  A   +P+  +   NL + L  +   G+  IG+  +     +      ++ A++LGAE
Sbjct: 1627 ARSAELWMPWEAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSMASYRFPERAAILLGAE 1686

Query: 237  GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            G G+  +          +   G+I++LNV    A+ +Y  T+ H 
Sbjct: 1687 GHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHL 1731


>gi|145485115|ref|XP_001428566.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395653|emb|CAK61168.1| unnamed protein product [Paramecium tetraurelia]
          Length = 231

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 16/157 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--------HI 187
           ++L ++  P NIG I+R+A AF+   +    +    ++    + A G            +
Sbjct: 9   LLLHNIAKPKNIGTIIRNAAAFNLTKVFMIGK--QGQTKKKFQIAEGFSFFGNHGTYDQM 66

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            +   +NL +A +          G+   +  + +            LG EG GL P+ + 
Sbjct: 67  NFHLFNNLKEAKEYFVLNNIFVCGVEIGEGSQNIITNPFKGNTVFFLGNEGTGLIPEHKA 126

Query: 247 TATSMAHLHMPGIIK-ALNVSNAAAVALYITQNHFAK 282
                 ++        +LNV  A+ +  +    HFA+
Sbjct: 127 LCDHFVYIPQYTQKTASLNVGVASGIIFH----HFAQ 159


>gi|322822058|gb|EFZ28222.1| hypothetical protein TCSYLVIO_5548 [Trypanosoma cruzi]
          Length = 1716

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 71/169 (42%), Gaps = 5/169 (2%)

Query: 116  LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            L    L    L   +   L+++   + +P N+  + R    F+ + ++ + + +      
Sbjct: 1545 LVYDELHPRALKQEKRQPLIVLSSLLQNPVNVAGLFRCGEIFTIEKVVVSDQ-AVFAHPH 1603

Query: 176  LAKSASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
               +A  A   +P+  +   NL + L  +   G+  IG+  +     +      ++ A++
Sbjct: 1604 FVAAARSAELWMPWDAVMAKNLPEYLGSLRQDGYTLIGIEQTAGSVSIASYRFPERAAIL 1663

Query: 233  LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            LGAEG G+  +          +   G+I++LNV    A+ +Y  T+ H 
Sbjct: 1664 LGAEGHGVPAELLPVLDVCVEIPQFGLIRSLNVHVTGALVMYEYTRQHL 1712


>gi|282890164|ref|ZP_06298694.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499821|gb|EFB42110.1| hypothetical protein pah_c014o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 253

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 8/148 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            + + LD +    N+G+I+R+  AFS   +  +      E + + K+A G  E +   + 
Sbjct: 103 SIAIYLDSIRSAFNVGSIIRTVEAFSLGSLYFSPETPCVEHSQVQKTAMGTSEWVTCFKD 162

Query: 193 SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             LTD  +         I L +      +   +  +  +L+LG E  G    T + A  +
Sbjct: 163 IPLTDLPK-------PIIALETSPCAISIYDFVFPEVFSLVLGNEEYGCSEATLKQADFL 215

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + + G   +LNV+NA A+A    +  
Sbjct: 216 LQIPLCGRKNSLNVANAFAIAAGEIRRQ 243


>gi|71650732|ref|XP_814058.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878998|gb|EAN92207.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 409

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 90/277 (32%), Gaps = 90/277 (32%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------------- 130
                   VK V  + + ++ G+    Q + LE A      + A                
Sbjct: 118 LARAMRLDVKAVERRELVRLCGERRN-QNVVLEVAGYTPWDVAACPWPSGGRNAPGHGNN 176

Query: 131 --------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                             ++ LDHV DP N+GAI+RSA       ++ +   S   +A +
Sbjct: 177 GHDNKGRSGHSGGGGGDNVLFLDHVIDPGNVGAIMRSAFFLGVRCVVLSCD-SAGCTAAM 235

Query: 177 AKSASGALEHIPYIR-----ISNLTDALQKMHSWG------------FQTIGLSSDSKKP 219
           A++++G +EH+   R      + L + + +  + G                 +    ++P
Sbjct: 236 ARASAGVMEHMAVYRSVVPTTTFLENTIAQHRARGDPCSLEMYAAITIPMHAIMRSGRQP 295

Query: 220 LEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMP----------GIIK---- 261
            E+  K      +  L+LG E KGL P+     +   H+  P                  
Sbjct: 296 KEETEKGGEPMRRRLLLLGNEDKGLPPEVVRLCSHAVHIPSPWMQQYEQRWLHHADTTAK 355

Query: 262 -------------------------ALNVSNAAAVAL 273
                                    +LNVS A+A+ L
Sbjct: 356 KGNCAKGKNGVVLEDDVVLLRPQEVSLNVSAASAIIL 392


>gi|7507813|pir||T28895 hypothetical protein T14B4.1 - Caenorhabditis elegans
          Length = 1203

 Score = 99.7 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 4/154 (2%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIR 191
             L++V   V+ P+N+G I R++  F  D ++      +   +      +S   + I  ++
Sbjct: 1049 SLIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDANFKALSMSSENWQKIEGVK 1108

Query: 192  ISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +NL   LQ + + G+  I     +   +    +   K  +++G E +G+          
Sbjct: 1109 RTNLLPYLQNLRANGYTVIAAEQTTDSVMMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQ 1168

Query: 251  MAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
               +   G  ++LNV   AA+ +  +  Q  F K
Sbjct: 1169 TVEIKQVGHTRSLNVHVTAALMIAKFAEQVRFDK 1202


>gi|294891839|ref|XP_002773764.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239878968|gb|EER05580.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 301

 Score = 99.7 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 90/282 (31%), Gaps = 55/282 (19%)

Query: 35  SFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLAT-KNALARLDWDANLPHPFPV 93
              +  +   + E +F+ G+ T+   +    +K   L+   +N    L+           
Sbjct: 17  RLRKSRKFREEQERVFVKGLDTIRT-IAAAGQKFDTLMVVAENPSIALEGGVAANRTL-- 73

Query: 94  KTVPPQTIDKIVGKEA--VH-------------------------QGLALETAPLLSPTL 126
             VP   ++ I        H                          G+  E  P  S   
Sbjct: 74  -RVPRDLLEHITYNHHFNAHLYGVTDERLCVGDIEMPKHAEIDWESGVCSERVPTESF-- 130

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
                 ++++ LD +    N+G +L++A A     ++ T          + + + GA   
Sbjct: 131 -----PEIVLCLDGLQYTDNVGRLLKTAWAVGVSRVVLTPESCDPWDWKVLEES-GAKYW 184

Query: 187 --IPYIRISNLTDALQKMHSWGF-QTIGLSSD----SKKPLEQEIK-------NDKIALI 232
             +P     +    L+   +      +  SS       +PL    K          + ++
Sbjct: 185 DKMPIHTGVDAVRLLKFCAARQLLPVVATSSGVGRQGTEPLPTVKKLNVRNAGYRGVMVV 244

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +G+E +G   +  E  T    L M     +LN S A  V LY
Sbjct: 245 VGSEARGPSMELLECCT-RVTLPMSMAADSLNASVAGGVLLY 285


>gi|38234645|ref|NP_940412.1| putative RNA methylase family protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200909|emb|CAE50624.1| Putative RNA methylase family protein [Corynebacterium diphtheriae]
          Length = 172

 Score = 99.3 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++  +  NIG ++R+A AF+ D +    R          + A     + 
Sbjct: 17  DTRRHCLHIAIENFENDANIGTVVRTANAFAVDTVHIVGR-----KRWNRRGAMVTDRYQ 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +      D +      G   + +  +    PLE     ++  L+ G EG G+  + Q+
Sbjct: 72  HLMHHPTTADVVAWAKQQGLTIVAIDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQD 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 132 NARMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 165


>gi|193204953|ref|NP_495375.3| hypothetical protein T14B4.1 [Caenorhabditis elegans]
 gi|169404471|gb|AAK31550.3| Hypothetical protein T14B4.1 [Caenorhabditis elegans]
          Length = 1225

 Score = 99.3 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 4/154 (2%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIR 191
             L++V   V+ P+N+G I R++  F  D ++      +   +      +S   + I  ++
Sbjct: 1071 SLIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDANFKALSMSSENWQKIEGVK 1130

Query: 192  ISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +NL   LQ + + G+  I     +   +    +   K  +++G E +G+          
Sbjct: 1131 RTNLLPYLQNLRANGYTVIAAEQTTDSVMMHDFVFPKKAVIVMGDEKEGVPVNLLRAVDQ 1190

Query: 251  MAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
               +   G  ++LNV   AA+ +  +  Q  F K
Sbjct: 1191 TVEIKQVGHTRSLNVHVTAALMIAKFAEQVRFDK 1224


>gi|224138732|ref|XP_002326676.1| predicted protein [Populus trichocarpa]
 gi|222833998|gb|EEE72475.1| predicted protein [Populus trichocarpa]
          Length = 1224

 Score = 99.3 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 9/169 (5%)

Query: 116  LETAPLLSPTLDAVRNSQLLM--VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            L++  L    + A R   +L+  +LD +  P N+  + R+   F   G+      S    
Sbjct: 1056 LQSRRLTMEKIRASRQQFILVASLLDRI--P-NLAGLARTCEVFKVSGLAIADA-SILRD 1111

Query: 174  AVLAKSASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIA 230
                  +  A + +P I +   ++   L+K    GF  +GL   +   PL+      K  
Sbjct: 1112 KQFQLISVTAEKWVPIIEVPVNSVKHFLEKKKRDGFSILGLEQTANSVPLDHHAFPKKTV 1171

Query: 231  LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 1172 LVLGREKEGIPVDIIHMLDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1220


>gi|167754822|ref|ZP_02426949.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402]
 gi|237735446|ref|ZP_04565927.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
 gi|167704872|gb|EDS19451.1| hypothetical protein CLORAM_00326 [Clostridium ramosum DSM 1402]
 gi|229381191|gb|EEO31282.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
          Length = 246

 Score = 99.3 bits (247), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 14/220 (6%)

Query: 58  SAALNNPSRKIFQLLATKN--ALARLDWDANLPHPFPVKTVPPQ-TIDKIVGKEAVHQGL 114
              L N    + ++    N      +    NL     ++ +    TI+K+  K+      
Sbjct: 22  IELLENKPELVMRVYLKSNSYQNKGVKIIENLCQQNKIELIESDNTINKLAKKD---NCF 78

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A+      +  L+   +    +VL +  D  N+G I+R+ + F+   +   +        
Sbjct: 79  AIAIIKKYTMDLEDANH----VVLVNPGDMGNMGTIIRTMLGFNYTNLAIIRPGVDVFDP 134

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALIL 233
            + +++ GAL +I +   ++  + L K      +   L     K + Q    N+K +L+ 
Sbjct: 135 RVIRASMGALFNINFEYFNSFDEYLTKYPER--EVYPLMLKGAKNIHQITAANNKHSLVF 192

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           G E  GL     +       +     I +LN+S A  + L
Sbjct: 193 GNESSGLPDDYLKYG-QSVFIPHSDKIDSLNLSMALGITL 231


>gi|227505888|ref|ZP_03935937.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940]
 gi|227197516|gb|EEI77564.1| RNA methyltransferase [Corynebacterium striatum ATCC 6940]
          Length = 229

 Score = 99.3 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R          + A     +   
Sbjct: 76  RRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQHL 130

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  + + + L+     G   + +  +    PLE     ++  L+ G EG G+  + Q+ A
Sbjct: 131 MHHATVAELLEWASDKGLTVVAIDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQDAA 190

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 191 MMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 222


>gi|315501742|ref|YP_004080629.1| tRNA/rRNA methyltransferase (spou) [Micromonospora sp. L5]
 gi|315408361|gb|ADU06478.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora sp. L5]
          Length = 207

 Score = 99.3 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R          + A     +   
Sbjct: 55  RRHDFHVAIENWQHDFNIGTVVRNANAFLAAEVHIVGRR-----RWNRRGAMVTDRYQHV 109

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                + + +          +G+      +P+E  +   +  L+ G EG GL    +   
Sbjct: 110 RHHPTIEEFVAWARDERLPVVGIDNLPGSRPMETAVLPRRCVLLFGQEGPGLSAVARSAC 169

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            ++  +   G  +++N   A+ +A++     +A
Sbjct: 170 DALFSIAQYGSTRSINAGVASGIAMHAWIRSYA 202


>gi|301096892|ref|XP_002897542.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107002|gb|EEY65054.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 99.3 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 516 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 575

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +L  AL +     +  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 576 EEVRPQGDDLRRALVRWKREDYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 635

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 636 LQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 672


>gi|41409957|ref|NP_962793.1| hypothetical protein MAP3859 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398790|gb|AAS06409.1| hypothetical protein MAP_3859 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 219

 Score = 99.3 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG+++R+A AF+   +    R          + A     +   
Sbjct: 66  RRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQRL 120

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  + L    + G   + +        LE+     +  L+ G EG G+   T+  A
Sbjct: 121 CHHDSTAELLDFAAAAGLTVVAVDNVPGAARLEETTLPRECLLVFGQEGPGITDDTRTGA 180

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           T    +   G  +++N   AA +A++   Q H
Sbjct: 181 TLTVSIAQFGSTRSINAGVAAGIAMHAWIQQH 212


>gi|159470575|ref|XP_001693432.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158282935|gb|EDP08686.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 145

 Score = 99.3 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 16/144 (11%)

Query: 106 GKEAVHQGLALETAPLLSPTLDAVRNSQ--------------LLMVLDHVNDPHNIGAIL 151
            ++  HQGL L+ APL    +D    +               + + LD V DP N+GA++
Sbjct: 2   SQDRPHQGLVLDVAPLTWTHMDEFPPAAQAAAAAAEAGAPPPVWLALDEVVDPQNLGAVV 61

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS-WGFQTI 210
           RSA      G++   R     S V++K+++GA+E +P     NL   L       G+  +
Sbjct: 62  RSAYCLGAAGVLACSRNCAPLSPVVSKASAGAVEALPLHSCHNLPRTLMDARDLKGWAVL 121

Query: 211 -GLSSDSKKPLEQEIKNDKIALIL 233
              +    +P+ +        L+L
Sbjct: 122 GAAAGGGSEPVGRVAVTGPTILVL 145


>gi|149917858|ref|ZP_01906353.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
 gi|149821378|gb|EDM80780.1| tRNA/rRNA methyltransferase (SpoU) [Plesiocystis pacifica SIR-1]
          Length = 240

 Score = 99.3 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 15/177 (8%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                +   LDA R + + + +++  DPHN  A++RS  A     +     +     A  
Sbjct: 29  RRRERIESVLDA-RLASVQVAIENPYDPHNAAAVVRSTEALGGWTVHVIAAHERILRAK- 86

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWG-----------FQTIGLSSDSKKPLEQEIK 225
             + +G    +       L D    +                   G   D+   LE+   
Sbjct: 87  -GTTTGTHHWLETRNHRTLADFEAHLGPARAAGGAGGPGEGMILAGACVDATHMLEELPV 145

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
           +  + L+ G E  GL P+ + +      + + G  ++ N+S +AA+ LY +T    A
Sbjct: 146 DRPLCLLFGNEHAGLSPEAKASCDLRFRIPIHGFAESYNLSVSAALTLYSVTTRRRA 202


>gi|255566751|ref|XP_002524359.1| RNA binding protein, putative [Ricinus communis]
 gi|223536320|gb|EEF37970.1| RNA binding protein, putative [Ricinus communis]
          Length = 1744

 Score = 99.0 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 9/169 (5%)

Query: 116  LETAPLLSPTLDAVRNSQLLMV--LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            L++  L    + A R   +L+   LD V  P N+  + R+   F   G+    + S    
Sbjct: 1576 LQSRILTMERIRASRQHLILVASFLDRV--P-NLAGLARTCEVFRASGLAIADK-SILHD 1631

Query: 174  AVLAKSASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIA 230
                  +  A + +P I +   ++   L+K    G+  +GL   +    L+Q     K  
Sbjct: 1632 KQFQLISVTAEKWVPIIEVPVNSVKQFLEKKKQEGYSILGLEQTANSVSLDQFAFPKKTV 1691

Query: 231  LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 1692 LVLGREKEGVPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1740


>gi|238062522|ref|ZP_04607231.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237884333|gb|EEP73161.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 210

 Score = 99.0 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R          + A     +   
Sbjct: 58  RRHDFHVAIENWQHDLNIGTVVRNANAFLAAEVHIVGRR-----RWNRRGAMVTDRYQHV 112

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                + +            +G+      +PLE      + AL+ G EG GL    +   
Sbjct: 113 RHHETIEEFAAWAAGRNLPVVGIDNLPGSRPLETTSLPRRCALLFGQEGPGLSDAARAAC 172

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
             +  +   G  +++N   A+ +A++   + H
Sbjct: 173 DQLFSIAQYGSTRSINAGVASGIAMHAWIRAH 204


>gi|331664149|ref|ZP_08365059.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA143]
 gi|331059948|gb|EGI31925.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA143]
          Length = 123

 Score = 99.0 bits (246), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
             G++     +  ES    ++A G  EH+  I   N+ + L      G+  +  SS+  K
Sbjct: 1   MKGVVVQDA-ALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGK 59

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YIT 276
           PL +     K+ L+LG E +GL    ++       +   G +  LN+S A  V L  +  
Sbjct: 60  PLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWR 119

Query: 277 QN 278
           QN
Sbjct: 120 QN 121


>gi|86748324|ref|YP_484820.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gi|86571352|gb|ABD05909.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 150

 Score = 99.0 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR     + +  I      P+      ++    L+ I  +R  + +   Q   
Sbjct: 11  PQNTGTLLRFCACLNVEAHIIEPAGFPTSDRHFRRAGMDYLDQITIVRHDSWSKFEQWRK 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + I L++    P  ++       L+LG E  G+  +    A +   + M    ++L
Sbjct: 71  DADCRVILLTTKGVTPYLEQRYQSTDVLLLGRESAGVPDEVAAAADARIVIPMQPGFRSL 130

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+ +      
Sbjct: 131 NVAMAAALVVGEALRQ 146


>gi|284992366|ref|YP_003410920.1| tRNA/rRNA methyltransferase SpoU [Geodermatophilus obscurus DSM
           43160]
 gi|284065611|gb|ADB76549.1| tRNA/rRNA methyltransferase (SpoU) [Geodermatophilus obscurus DSM
           43160]
          Length = 213

 Score = 99.0 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++     NIG ++R+A AF    +    R          + A     + 
Sbjct: 59  DTRRHPFHVAIENWRHDLNIGTVVRTANAFLAAEVHIVGRR-----RWNRRGAMVTDRYQ 113

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++   +    S G   + +      +PLE E       L+ G EG GL  + ++
Sbjct: 114 HVRHHPDVAALVTWARSDGLPLLAVDNLPGARPLETEPLPRACVLLFGQEGTGLSAEARD 173

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A  +  +   G  +++N   AA +A++   + H
Sbjct: 174 AADGVLSIAQFGSTRSVNAGVAAGIAMHAWVRQH 207


>gi|332527885|ref|ZP_08403922.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332112462|gb|EGJ12255.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 262

 Score = 99.0 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 10/213 (4%)

Query: 24  RRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDW 83
            R++    +++   Q      +   ++L G H   AAL    R   Q L   +A  +   
Sbjct: 9   SRDNPLLARVRRLAQDGNAYRRVGQVWLEGDHLC-AALRARGRPAAQALVAVSAWEQGGA 67

Query: 84  DANLPH-PFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVN 142
             +L      V  V         G E+  +   L  AP     L         +VLD V 
Sbjct: 68  LRDLAGWAQAVAVVDDALFAAASGLESPAKIGFLIDAPAGGAVLPDAHG----VVLDRVQ 123

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G+ILRSA A     ++  K  +   S  + ++  GA   +  +   +        
Sbjct: 124 DAGNVGSILRSAAALGATQVLALKGTASLWSPKVLRAGMGAHFALNLVEGLDDAAL---- 179

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
            +     +     +   L +     + A +LGA
Sbjct: 180 DALAVPLVATLPHAGATLREAALPPRCAWVLGA 212


>gi|255079034|ref|XP_002503097.1| predicted protein [Micromonas sp. RCC299]
 gi|226518363|gb|ACO64355.1| predicted protein [Micromonas sp. RCC299]
          Length = 204

 Score = 99.0 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 13/149 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           ++ ++   HN+G I R A AF    ++     S   +    K   G+  H+ ++    L+
Sbjct: 3   LVHNIAKKHNVGTIARCATAFGVRSVVLIGAKS--YNTFGCK---GSSNHVDFVHYPTLS 57

Query: 197 DA-LQKMHSWGF-QTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           DA +  M   G  + +G+   D   P+E        A I G EG GL  + +       +
Sbjct: 58  DARVGLMERMGVTKILGVEICDGAVPIETHPFAQNTAFIAGNEGDGLTKQQKAICDGFVY 117

Query: 254 LHMPG-IIKALNVSNAAAVALYITQNHFA 281
           +   G    +LNV+ A+A+ ++    HFA
Sbjct: 118 IRQHGVGTASLNVAVASALVMH----HFA 142


>gi|291240059|ref|XP_002739939.1| PREDICTED: TAR (HIV-1) RNA binding protein 1-like [Saccoglossus
            kowalevskii]
          Length = 1247

 Score = 99.0 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 126  LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            L   +  QL++V   ++   N+G I R+   F    ++        E       +  A +
Sbjct: 1086 LRNRKRGQLILVTSLIDKLPNLGGICRTCEIFGVGQLVLASLKYA-EHKDFQGLSVTAEK 1144

Query: 186  HIPY--IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRP 242
             IP   ++ S L D L ++   G+  IG+   +    L Q    DK  L+LG E +G+  
Sbjct: 1145 WIPLREVKASALKDYLLEVRKEGYTLIGVEQTANSHCLTQYQFTDKTLLLLGNEREGIPV 1204

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
            +  +       +   G+I++LNV  + A+ ++  T+    K
Sbjct: 1205 ELIQLLDMCVEIPQLGVIRSLNVHVSGALLVWEYTRQQLLK 1245


>gi|323454345|gb|EGB10215.1| hypothetical protein AURANDRAFT_15819 [Aureococcus anophagefferens]
          Length = 178

 Score = 99.0 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY-SPSESAVLAKSASGALEHIPYIRISN 194
           +VLD+V    N+G+I RSA    C  ++T     +P  +A LAK+A GA   + +    +
Sbjct: 25  VVLDNVRSAENVGSIFRSADCGRCLEVVTCGFTPNPLSTAKLAKTAFGAEAAVAHRHFES 84

Query: 195 LTDALQKMHSWGFQTIGL-SSDSKKPLEQEI-----KNDK-IALILGAEGKGLRPKTQET 247
              A++++ + G     L + D   P           +   +AL+LG E  G+       
Sbjct: 85  TKAAVEELKAAGVSVWALETVDGAAPYAAAPLPPGAFDGPGVALVLGNEVTGVDGAVLPL 144

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++  +   G   ++NV+ AA   ++     
Sbjct: 145 VDAVVEIPTFGTKNSMNVACAATTVIFDVLRR 176


>gi|87303673|ref|ZP_01086448.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
 gi|87281778|gb|EAQ73743.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
          Length = 161

 Score = 98.6 bits (245), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+  A   +  +        +   L ++       +P       
Sbjct: 7   VVLFQPQIPPNTGNVARTCAATGAELHLIEPLGFSLDERQLKRAGLDYWPWVPLHVHPGF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +    G + + LSS + +P +         L+ G E  GL P+  E A     + 
Sbjct: 67  EALSAEQRRRGGRLLALSSQADQPYQHCRFCSDDWLLFGRESDGLPPELLEQADMRLTIP 126

Query: 256 MP------GIIKALNVSNAAAVALYITQNHF 280
           MP      G +++LN+S + AV L+      
Sbjct: 127 MPGSVRHGGGVRSLNLSVSVAVVLFEALRQL 157


>gi|322825586|gb|EFZ30499.1| hypothetical protein TCSYLVIO_3210 [Trypanosoma cruzi]
          Length = 408

 Score = 98.6 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 92/278 (33%), Gaps = 92/278 (33%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS------------ 132
                   +K V  + + ++ G+    Q + LE A      + A                
Sbjct: 118 LARAMRLDIKAVERRELVRLCGERRN-QNVVLEVAGYTPWEVAACPWPSGGRNAPGHGNK 176

Query: 133 ----------------QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                             ++ LDHV DP N+GAI+RSA       ++ +   S   +A +
Sbjct: 177 GHDNKGRSGHSGGGVGDNVLFLDHVIDPGNVGAIMRSAFFLGVRCVVLSCD-SAGCTAAM 235

Query: 177 AKSASGALEHIPYIR-----ISNLTDALQKMHSWGFQTIGLSSDSKK--PLEQEIKNDKI 229
           A++++G +EH+   R      + L + + +  + G     L   +    P++  +++ + 
Sbjct: 236 ARASAGVMEHMAVYRSVAPTTTFLENTIAQHRARGDPC-SLEMYAAITMPMDAIMRSGRQ 294

Query: 230 A---------------LILGAEGKGLRPKTQETATSMAHLHMP----------GIIK--- 261
           A               L+LG E KGL P+     +   H+  P                 
Sbjct: 295 AKGETEKGGEPMRRRLLLLGNEDKGLPPEVVRLCSHAVHIPSPWMQQYERRRLHHADTTA 354

Query: 262 --------------------------ALNVSNAAAVAL 273
                                     +LNVS A+A+ L
Sbjct: 355 TKGNCAKGKNGVVLEDDVALLRPQEVSLNVSAASAIIL 392


>gi|118468653|ref|YP_885145.1| spou rRNA methylase family protein [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169940|gb|ABK70836.1| spou rRNA methylase family protein [Mycobacterium smegmatis str.
           MC2 155]
          Length = 214

 Score = 98.6 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T P +   +D  R   L + +++     NIG ++R+A AF+ D +    R          
Sbjct: 50  TRPAIVADIDT-RRHPLHIAIENFGSDANIGTVVRTANAFAVDTVHIVGRR-----RWNR 103

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +          D L      G   + +        LE+        LI G E
Sbjct: 104 RGAMVTDRYQRLRHHDTTADLLDFADDAGLVVVAVDNVPGSVRLEETELPRNCLLIFGQE 163

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+ P+ Q  A     +   G  +++N   AA +A++     H
Sbjct: 164 GPGITPEAQAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWITRH 207


>gi|172041466|ref|YP_001801180.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171852770|emb|CAQ05746.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 243

 Score = 98.6 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L + +++  +  NIG ++R+A AF+ D +    R          + A     +   
Sbjct: 90  RRHELHIAIENFENDANIGTVVRTANAFAVDTVHIVGR-----KRWNRRGAMVTDRYQHL 144

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                + + L          + +  +    PLE      +  L+ G EG G+  + Q  A
Sbjct: 145 EHHKTVAEVLDYAAEQDLAVVAVDNTPGSVPLETAELPRRCLLLFGQEGPGVTEEAQRGA 204

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 205 RMTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 236


>gi|301096896|ref|XP_002897544.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262107004|gb|EEY65056.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 681

 Score = 98.6 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 6/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 516 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 575

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
             +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+  + 
Sbjct: 576 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEV 635

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
            +       +    ++++LNV  + A+ L+  TQ   
Sbjct: 636 LQLVDVCVEIPQFELVRSLNVHVSGALVLWEYTQQQL 672


>gi|118462459|ref|YP_883915.1| spou rRNA methylase family protein [Mycobacterium avium 104]
 gi|118163746|gb|ABK64643.1| spou rRNA methylase family protein [Mycobacterium avium 104]
          Length = 214

 Score = 98.6 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG+++R+A AF+   +    R          + A     +   
Sbjct: 61  RRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQRL 115

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  + L    + G   + +        LE+     +  L+ G EG G+   T+  A
Sbjct: 116 CHHDSTAELLDFAATAGLTVVAVDNVPGAARLEETTLPRECLLVFGQEGPGITDDTRTGA 175

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           T    +   G  +++N   AA +A++   Q H
Sbjct: 176 TLTVSIAQFGSTRSINAGVAAGIAMHAWIQQH 207


>gi|91214829|ref|ZP_01251802.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
 gi|91187256|gb|EAS73626.1| rRNA methylase [Psychroflexus torquis ATCC 700755]
          Length = 171

 Score = 98.6 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 1/144 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYIRISN 194
           ++L+ ++ P N+G++ R++ AF    I   +   S  +S  L +++  A  ++      +
Sbjct: 25  VLLERLDSPANLGSVFRNSEAFGIVNIWIHEANRSYLKSNRLKRTSRSAEFNLNIHFYED 84

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
               L              +       ++    KI L+LG E  G+  +T        H+
Sbjct: 85  EASILDTFEGTTIGIEITKNSENLSSFKKGLKSKILLVLGNEKLGINSETLNRLDRSYHI 144

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            M G   +LNV+    +ALY  + 
Sbjct: 145 KMFGTNSSLNVAQTLGIALYEIRR 168


>gi|68535279|ref|YP_249984.1| putative rRNA methylase [Corynebacterium jeikeium K411]
 gi|68262878|emb|CAI36366.1| putative rRNA methylase [Corynebacterium jeikeium K411]
          Length = 227

 Score = 98.6 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++  +  NIG ++R+A AF+ D +    R          + A     + 
Sbjct: 72  DTRRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQ 126

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                + + + L+     G   + +  +    PLE     ++  L+ G EG G+  + Q+
Sbjct: 127 HLQHHATVGEVLEFAAREGLVVVAVDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQD 186

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 187 AARMTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 220


>gi|157138295|ref|XP_001664217.1| hypothetical protein AaeL_AAEL013974 [Aedes aegypti]
 gi|108869532|gb|EAT33757.1| conserved hypothetical protein [Aedes aegypti]
          Length = 451

 Score = 98.6 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 4/150 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++V   VN   N+G + RS+  F+    I        E+      +  A + +    +
Sbjct: 297 GLIVVASLVNRAPNLGGLARSSEIFAVKQYIVNSLK-DLENKEFQALSMTAEKWLNVAEL 355

Query: 193 SN--LTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +  + D L +M S G+  +G   +   +P++Q     +  L+LG E +GL         
Sbjct: 356 KSFQIVDYLLEMKSKGYSVVGAEQTTGSRPIQQIEFPKRSILVLGHEKEGLPAHIISHLD 415

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +A +   G++++LNV    A+ ++     
Sbjct: 416 IIAEIPQFGVVRSLNVHVTGAIFMWEYAKQ 445


>gi|297621668|ref|YP_003709805.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
 gi|297376969|gb|ADI38799.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
           86-1044]
          Length = 239

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + LD +   HN+G+ILR+  AF    +  +K         ++K+A G  + I + R ++ 
Sbjct: 99  LYLDQIRSAHNVGSILRTVEAFQLGDVYFSKDTPLPTHPQVSKTAMGCSKEICFQRHASP 158

Query: 196 TDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           ++  +         I L +S    P+++        L +G E  GL  +    A ++  +
Sbjct: 159 SELPR-------PLIALETSSDGIPIDKYTFPSSGCLAVGNEEYGLSDEVLSQADAVVEI 211

Query: 255 HMPGIIKALNV 265
            + G   +LNV
Sbjct: 212 PLYGKKNSLNV 222


>gi|254777225|ref|ZP_05218741.1| spou rRNA methylase family protein [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 218

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG+++R+A AF+   +    R          + A     +   
Sbjct: 65  RRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQRL 119

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  + L    + G   + +        LE+     +  L+ G EG G+   T+  A
Sbjct: 120 CHHDSTAELLDFAATAGLTVVAVDNVPGAARLEETTLPRECLLVFGQEGPGITDDTRTGA 179

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           T    +   G  +++N   AA +A++   Q H
Sbjct: 180 TLTVSIAQFGSTRSINAGVAAGIAMHAWIQQH 211


>gi|169631336|ref|YP_001704985.1| putative RNA methyltransferase [Mycobacterium abscessus ATCC 19977]
 gi|169243303|emb|CAM64331.1| Putative RNA methyltransferase [Mycobacterium abscessus]
          Length = 224

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L + +++  +  NIG ++R+A AF+   +    R          + A     +   
Sbjct: 71  RRHRLHIAIENFENDANIGTVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQHL 125

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   +  + L      G   + +       PLE         L+ G EG G+   ++  A
Sbjct: 126 MHHDSTDELLDYAKRAGLTVVAVDNVPGSVPLETAELPVDCLLVFGQEGPGVTDASKSGA 185

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 186 VMTVSIAQFGSTRSINAGVAAGIAMHAWVRQH 217


>gi|260578510|ref|ZP_05846422.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603349|gb|EEW16614.1| TrmH family RNA methyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 227

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++  +  NIG ++R+A AF+ D +    R          + A     + 
Sbjct: 72  DTRRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQ 126

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                + + + L+     G   + +  +    PLE     ++  L+ G EG G+  + Q+
Sbjct: 127 HLQHHATVGEVLEFAAREGLVVVAVDNTPGCVPLETAELPERCLLLFGQEGPGVTQEAQD 186

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 187 AARMTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 220


>gi|317507017|ref|ZP_07964783.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254684|gb|EFV13988.1| SpoU rRNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 105

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE--IKNDKIALILGAEGKGLR 241
           L  +P  R  ++   +  + + G +    ++D + PL +     +   A + G E  GL 
Sbjct: 1   LFAVPLARERDVAAGVAALRTAGLRLFATTADGELPLGRAGSELSGPCAWLFGNEAHGLP 60

Query: 242 PKTQETATSMAHLHMPGII-----KALNVSNAAAVALYITQN 278
                 A     + M         ++LN++ AA + LY T  
Sbjct: 61  EPVARAADHRVAVPMRPAAGFAPPESLNLAVAAGICLYETAR 102


>gi|91975781|ref|YP_568440.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB5]
 gi|91682237|gb|ABE38539.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB5]
          Length = 150

 Score = 98.2 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 54/136 (39%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR     + +  I      P+      ++    L+ +  +R  + +  +Q   
Sbjct: 11  PQNTGTLLRFCACLNLEAHIIEPAGFPTSDRHFRRAGMDYLDQVTILRHDSWSKFVQWRK 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + I L++    P  ++       L+LG E  G+  +    A +   + M   +++L
Sbjct: 71  EADCRVILLTTKGVTPYLEQRYQSTDVLLLGRESAGVPDEVAAAADARVLIPMQPKMRSL 130

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+ +      
Sbjct: 131 NVAMAAALVVGEALRQ 146


>gi|332188848|ref|ZP_08390556.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
 gi|332011114|gb|EGI53211.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
          Length = 151

 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 3/135 (2%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R+A  F     +      P     LA+SA   ++    +R ++ T    +  +
Sbjct: 12  GNVGTLIRTAACFGIAVDLIEPMGFPYSDRALARSAMDYVDRAEVVRHADWTAF--QAAA 69

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   +  +     PL          ++LG+EG G+     + A     + M   +++LN
Sbjct: 70  RGRIVLATTL-GALPLPDMRFRPDDVILLGSEGAGVPSAVHDAADIRVRVPMRAGVRSLN 128

Query: 265 VSNAAAVALYITQNH 279
           V+    + +   +  
Sbjct: 129 VAITGGILMAEARRQ 143


>gi|239946879|ref|ZP_04698632.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921155|gb|EER21179.1| rRNA methylase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 189

 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 14/171 (8%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSES-------AVLA 177
           +   R   L+ V+++ ++  NIGAI+R+  A       I T +    ++         L 
Sbjct: 18  IKEFRCKNLIAVIENPDNIKNIGAIIRNVNALGIKKAYIVTNQKLLPDTWEEMRKEPKLN 77

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP----LEQEIKND--KIAL 231
             +   ++        +    +  +    F ++  S   K      L +       K+A+
Sbjct: 78  AISVSDIKWSFVKIFKDTNSCMDHLEKESFVSVITSPHIKGYKNVVLHKHDYTKYKKLAV 137

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             G EG G+     + ++   ++ M GII++LN+  ++ + LY       K
Sbjct: 138 WFGNEGVGISKTAVKRSSFCINIPMYGIIESLNLGTSSGIVLYEIAKQRHK 188


>gi|71668065|ref|XP_820976.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886341|gb|EAN99125.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 408

 Score = 97.8 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 92/278 (33%), Gaps = 92/278 (33%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-------------- 130
                   +K V  + + ++ G+    Q + LE A      + A                
Sbjct: 118 LARAMRLDIKAVERRELVRLCGERRN-QNVVLEVAGYTPWDVAACPWPSGGRNASAHGNN 176

Query: 131 --------------NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                             ++ LDHV DP N+GAI+RSA       ++ +   S   +A +
Sbjct: 177 GHDNKGRSGHSGGGGGDNVLFLDHVIDPGNVGAIMRSAFFLGVRCVVLSCD-SAGCTAAM 235

Query: 177 AKSASGALEHIPYIR-----ISNLTDALQKMHSWGFQTIGLSSDSKK--PLEQEIKNDKI 229
           A++++G +EH+   R      + L + + +  + G     L   +    P++  +++ + 
Sbjct: 236 ARASAGVMEHMAVYRSVVPTTTFLENTIAQHRARGDPC-SLEMYAAITMPMDAIMRSGRQ 294

Query: 230 A---------------LILGAEGKGLRPKTQETATSMAHLHMP----------GIIK--- 261
           A               L+LG E +GL P+     +   H+  P                 
Sbjct: 295 AKGETEKGGEPMRRRLLLLGNEDRGLPPEVVRLCSHAVHIPSPWMQQYERRWLHHADTTA 354

Query: 262 --------------------------ALNVSNAAAVAL 273
                                     +LNVS A+A+ L
Sbjct: 355 TKGNCAKGKNGVVLEDDVVLLRPQEVSLNVSAASAIIL 392


>gi|253742338|gb|EES99175.1| TAR RNA loop binding protein, putative [Giardia intestinalis ATCC
            50581]
          Length = 1676

 Score = 97.8 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 6/141 (4%)

Query: 146  NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI--SNLTDALQKMH 203
            N+G + R+A  F  + ++     S +        +  A   +    +    L   + +  
Sbjct: 1528 NLGGLARTAEIFGLESLVLGNA-SFATDPSFKAMSMTADMWLKIEEVQPHRLIQWIAEKK 1586

Query: 204  SWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G+  + L   S+   L+      K  L+LG E  G   +          +   G  ++
Sbjct: 1587 KDGYSIVCLEQSSRSVYLQDAELPQKAVLVLGNERNGCPEEILSLCDMTVEIQQIGNTRS 1646

Query: 263  LNVSNAAAVAL--YITQNHFA 281
            LNV  + A+ +  +  Q+ FA
Sbjct: 1647 LNVHVSCAIFIWKWACQHRFA 1667


>gi|148242334|ref|YP_001227491.1| rRNA methylase [Synechococcus sp. RCC307]
 gi|147850644|emb|CAK28138.1| Predicted rRNA methylase [Synechococcus sp. RCC307]
          Length = 152

 Score = 97.8 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +            L ++      H+P ++ S+ 
Sbjct: 4   IVLVEPEIPPNTGNIARTCAATETPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQHSSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + L+       + +G S  + +   +        LI G E KGL P+ Q     +  + 
Sbjct: 64  GEFLKHHQHHSGRLLGFSRHASRSYLEIDYRADDWLIFGCETKGLAPEVQANCDDLLLIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S AAAV L+ ++   
Sbjct: 124 MTCSAVRSLNLSVAAAVVLFESRRQL 149


>gi|296138241|ref|YP_003645484.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296026375|gb|ADG77145.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 232

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD+ R     + ++++    NIG ++R+A AF    +    R          
Sbjct: 68  TREAIVADLDS-RRHPFEVAIENLGHDANIGTVVRTANAFGARTVHIVGRR-----RWNR 121

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAE 236
           + A     +       +               + + +     PLE+     +  L+ G E
Sbjct: 122 RGAMVTDRYQHVQHHPDAESFAAWCAEHDLPIVAVDNQPGSVPLERGSLPRRCVLLFGQE 181

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+    +  A +   +   G  +++NV  AA +A++   + H
Sbjct: 182 GPGVSGDARRVAGTTVSIAQFGSTRSINVGVAAGIAMHAWVREH 225


>gi|300859281|ref|YP_003784264.1| hypothetical protein cpfrc_01864 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686735|gb|ADK29657.1| hypothetical protein cpfrc_01864 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206969|gb|ADL11311.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302331529|gb|ADL21723.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277220|gb|ADO27119.1| SpoU rRNA Methylase family protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 223

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 8/163 (4%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            P +   +D  R++ L + +++  +  NIG ++R+A AF+ D +    R          +
Sbjct: 60  RPAIIKDIDTRRHA-LHVAIENFENDANIGTVVRTANAFAVDTVHIVGRR-----RWNRR 113

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237
            A     +   +   +    +    S G   + +  +    PLE     +K  L+ G EG
Sbjct: 114 GAMVTDRYQHLMHHPDTQSLVDWALSEGLTIVAIDNTPGCIPLETAELPEKCILLFGQEG 173

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            G+    Q+ A     +   G  +++N   AA +A++   + H
Sbjct: 174 PGVTQAAQKGALMTCSIAQFGSTRSINAGVAAGIAMHTWIRQH 216


>gi|317969845|ref|ZP_07971235.1| rRNA methylase [Synechococcus sp. CB0205]
          Length = 157

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + RS  A   +  +        +   L ++       +   R +N 
Sbjct: 4   VVLFQPEIPPNTGNVARSCAASCTELHLIEPLGFQIDDRTLKRAGLDYWPWVQLERHANW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+K    G + + LS  + +P  +        L+ G E  GL  +  E       + 
Sbjct: 64  EQFLEKRRQRGGRLLALSRHASEPYHRIQYRADDWLLFGRESSGLPGELLEHVDQRLLIP 123

Query: 256 MPGIIK------ALNVSNAAAVALYITQNHF 280
           MPG +       +LN++ +  V L+      
Sbjct: 124 MPGSVDQGGGVRSLNLATSVGVVLFEALRQL 154


>gi|296119026|ref|ZP_06837599.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968124|gb|EFG81376.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 216

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++  +  NIG ++R+A AF+ + +    R          + A     + 
Sbjct: 61  DTRRHSLHIAIENFENDANIGTVVRTANAFAVNTVHIVGRR-----RWNRRGAMVTDRYQ 115

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  +T+ +          + +  +    PLE     ++  L+ G EG G+  + QE
Sbjct: 116 HLEHHDTVTELMAWAREHEIAVVAIDNTPGSVPLETAQLPERCLLLFGQEGPGVTAEAQE 175

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           +A     +   G  +++N   AA +A++   + H
Sbjct: 176 SAEMTCSIAQFGSTRSINAGVAAGIAMHTWIRQH 209


>gi|149196494|ref|ZP_01873548.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
           HTCC2155]
 gi|149140174|gb|EDM28573.1| RNA methyltransferase TrmH, group 3 [Lentisphaera araneosa
           HTCC2155]
          Length = 166

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 65/159 (40%), Gaps = 6/159 (3%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            P  +  +    ++    +    N+  I+R A       +I     +   + V +K A  
Sbjct: 10  KPPTELKQERPFIIACSPLRSHVNLSTIMRMAGCSGVSQVI-----ATGNAKVNSKIARD 64

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLR 241
             E +  +  ++L   L+K+   G+  +GL  + +   L       K  L++GAE +GL 
Sbjct: 65  GAEQVNLVTKNSLPPVLKKLKQDGYTLVGLEQTTNSNNLHDFDFPHKCVLVVGAEREGLS 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +       + + G+  + NV++A ++A+Y     +
Sbjct: 125 QDCLDCLDYTVEIPVWGLPYSYNVASATSLAVYEYCRQY 163


>gi|319442020|ref|ZP_07991176.1| putative rRNA methylase [Corynebacterium variabile DSM 44702]
          Length = 220

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++  +  NIG ++R+A AF+ D +    R          + A     + 
Sbjct: 65  DTRRHALHIAIENFENDSNIGTVVRTANAFAVDTVHIVGR-----KRWNRRGAMVTDRYQ 119

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 +    +    +     + +  +    PLE     ++  L+ G EG G+  + Q 
Sbjct: 120 HLEHHPDTGSVMAYAAAHDLTVVAVDNTPGSVPLETAELPERCLLLFGQEGPGVTAEAQA 179

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A+    +   G  +++N   AA +A++   + H
Sbjct: 180 GASMTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 213


>gi|300175076|emb|CBK20387.2| unnamed protein product [Blastocystis hominis]
          Length = 698

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 70/154 (45%), Gaps = 4/154 (2%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            ++  +  +++++   V+   N+G + R+   F+ + I+        E  V   ++  A 
Sbjct: 428 EVEHRKKQKIVVIASLVDKLPNLGGLTRTGEIFAVEKIVVNSLRCKKE-QVFKSTSVTAE 486

Query: 185 EHIPYIRISN--LTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLR 241
           E +         L   L+++   G+  +GL    + K L +    +K+AL+LG E +G+ 
Sbjct: 487 EWVEMEECPESELPAYLRRLKEEGYALVGLEQTVTSKTLGKVEFPEKMALVLGKEKEGIP 546

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            K  +       +   GII++LNV  + ++ ++ 
Sbjct: 547 AKIIQMLDLCIEIPQFGIIRSLNVHVSGSILIWE 580


>gi|254822868|ref|ZP_05227869.1| hypothetical protein MintA_23264 [Mycobacterium intracellulare ATCC
           13950]
          Length = 219

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG+++R+A AF+   +    R          + A     +   
Sbjct: 66  RRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQRL 120

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  +        G   + +        LE+     +  L+ G EG G+   T+  A
Sbjct: 121 CHHDSTAELFDFAADAGLTVVAVDNVPGAARLEETALPRECLLVFGQEGPGITDDTRSGA 180

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           T    +   G  +++N   AA +A++   + H
Sbjct: 181 TLTVSIAQFGSTRSINAGVAAGIAMHTWVEQH 212


>gi|195112288|ref|XP_002000706.1| GI22376 [Drosophila mojavensis]
 gi|193917300|gb|EDW16167.1| GI22376 [Drosophila mojavensis]
          Length = 1157

 Score = 97.0 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 66/165 (40%), Gaps = 5/165 (3%)

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            L+ + + +   +L++V   ++   N+G + R+        +I     S +  +     + 
Sbjct: 994  LAQSSEQLNEQELIVVASLIDKLPNLGGLARTCEVLGVKTLIL-GAKSFALKSDFTNLSM 1052

Query: 182  GALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGK 238
             A + +    ++ ++L   L +  S G++ +G    +           +K  L+LG E  
Sbjct: 1053 TAEKTLNIGEVKPASLASYLIEKQSQGYKIVGAEQTAHSTNFTDFKFPEKCVLLLGHEKH 1112

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
            G+             +   G++++LNV    ++ ++   + H  K
Sbjct: 1113 GIPVDLIALLDFAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHLKK 1157


>gi|326384122|ref|ZP_08205805.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197282|gb|EGD54473.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 231

 Score = 97.0 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD  R     + +++     NIG ++R+A AF    +    R          
Sbjct: 67  TREAIVADLDT-RRHDFHVAIENWGHDSNIGTVVRTANAFLAAEVHIVGRR-----RWNR 120

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +      + + + +          + +  +     LE+     +  L+ G E
Sbjct: 121 RGAMVTDRYQHLRHHATVDELMAWAREHDLTVVAVDNTPGAVALERTELPRRALLVFGQE 180

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+  +TQ+ A     +   G  +++N   AA + ++     H
Sbjct: 181 GPGVSDETQDRADLTVSIAQFGSTRSINAGVAAGIVMHSWIARH 224


>gi|23013325|ref|ZP_00053233.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 103

 Score = 97.0 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--KNDKIALILGAEG 237
           + G LE +  IR      +L+++     + +G +  S KP+ + +      IAL+LG E 
Sbjct: 1   SEGGLEWVEVIRAQKFVASLKRLRDSH-RIVGTALGSGKPVAEVLNRPGKPIALLLGNEE 59

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            GL P T      +  L   G +++LNV+  AA+ ++    
Sbjct: 60  DGLPPATLAACDDIVTLPGSGRVQSLNVAATAAILIHELAK 100


>gi|284053209|ref|ZP_06383419.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira platensis str.
           Paraca]
 gi|291570564|dbj|BAI92836.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 153

 Score = 97.0 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVA-------FSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +VL +   P N G I R+  A           G   + RY       L ++      ++P
Sbjct: 4   LVLVNPQIPQNTGNIARTCAATQTPLHLVGPLGFEISDRY-------LKRAGLDYWPYVP 56

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +++ D        G + +G S+  K+        +   L+ G+E +GL P+     
Sbjct: 57  LKYHTHIEDFRAFHQPLGGRWVGFSARGKQNYVSFPFQENDWLLFGSETEGLPPEVLALC 116

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
            +  ++ M    +++LN+S +AAV L+  +    
Sbjct: 117 QATVYIPMSQPNVRSLNLSVSAAVGLFEARRQLG 150


>gi|25029159|ref|NP_739213.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|259505846|ref|ZP_05748748.1| TrmH family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
 gi|23494447|dbj|BAC19413.1| putative RNA methyltransferase [Corynebacterium efficiens YS-314]
 gi|259166520|gb|EEW51074.1| TrmH family RNA methyltransferase [Corynebacterium efficiens
           YS-314]
          Length = 230

 Score = 97.0 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +DA R   L + +++  +  NIG ++R+A AF+ D +    R          
Sbjct: 66  TREAIVADIDA-RRHPLHVAIENFENDANIGTVVRTANAFAVDTVHIVGRR-----RWNR 119

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +       ++   L          + +  +    PLE     ++  L+ G E
Sbjct: 120 RGAMVTDRYQHLEHHPDVHSLLVWALRNDLTVVAIDNTPGSVPLETAQLPERCLLLFGQE 179

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+  + +  A     +   G  +++N   AA +A++   + H
Sbjct: 180 GPGVTDEARAGALMTCSIAQFGSTRSINAGVAAGIAMHTWIRQH 223


>gi|218660923|ref|ZP_03516853.1| probable RNA methylase protein [Rhizobium etli IE4771]
          Length = 175

 Score = 96.6 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 5/159 (3%)

Query: 62  NNPSRKIFQLLATKNALAR-LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL---E 117
                +  ++L  +N +   L      P   PV       ++ IVG   +H+G+      
Sbjct: 8   QGRGFRAEKILLLRNRVEGILPILERFPADVPVYVAEADALEGIVGFH-LHRGVLALGRR 66

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
                +  LDA+    L++V   +++  N G++ R+A AF  D ++  +           
Sbjct: 67  EERDEAALLDALSERALVLVGCGISNHDNAGSMFRNAAAFRADAVLLDETSCDPLYRKAL 126

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           + + G++  +P+ R     D L  +   GF    LS   
Sbjct: 127 RVSVGSVLSVPHRRGGKALDLLLALAERGFAIWTLSPHG 165


>gi|67605967|ref|XP_666721.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657764|gb|EAL36488.1| hypothetical protein Chro.10198 [Cryptosporidium hominis]
          Length = 740

 Score = 96.6 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  S L+++   V+   NI  I R+   F  + ++ + +       +  + +  A + +P
Sbjct: 580 LNRSGLIVIGSLVDKVPNIAGITRTCEVFRANELLLSSKK-VMNDPIFRQISVTAEKWLP 638

Query: 189 Y--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              +  + + + +QK    G++  GL  + S   +++    +K  LILG E +G+  +  
Sbjct: 639 INELEPTKIKEYVQKKRMEGYKIFGLEQTSSSISIKECAFPEKSVLILGKEKEGIPSEIV 698

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                   +   GII++LNV  +A++ +Y     F +
Sbjct: 699 SIVDQCIEIPQYGIIRSLNVHVSASIFIYEYTTQFMQ 735


>gi|255070677|ref|XP_002507420.1| RNA methyltransferase [Micromonas sp. RCC299]
 gi|226522695|gb|ACO68678.1| RNA methyltransferase [Micromonas sp. RCC299]
          Length = 2006

 Score = 96.6 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 6/166 (3%)

Query: 114  LALETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            L  ETA  ++ TLD     R   L++V   V+   N+  + R+      + ++       
Sbjct: 1834 LVAETAADVNETLDTRLPERPPGLVVVASLVDKIPNLAGLARTCEVLGAEALVIADAART 1893

Query: 171  SESAVLAKSASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND 227
                     +  A   +P   + ++ L   L ++   G+  +GL  +     + +     
Sbjct: 1894 VSHRDFTAVSVTAERWLPIRDVPVNGLVSYLLRLRRDGYALVGLEQTRGAVDVNEYRFPR 1953

Query: 228  KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            K AL+LG E +G+         +   +   G+I++LNV  +A+VA+
Sbjct: 1954 KTALVLGREREGIDADVLNVLDACVVIPQKGMIRSLNVHVSASVAM 1999


>gi|290973947|ref|XP_002669708.1| spoU protein [Naegleria gruberi]
 gi|284083259|gb|EFC36964.1| spoU protein [Naegleria gruberi]
          Length = 307

 Score = 96.6 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 50/201 (24%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAK-SASGALEHI 187
           R   ++ VL+ V    N+ AI+R+   F   D  I +   S S+   ++K  A GA + I
Sbjct: 44  RTRFIIPVLEDVQSSQNVSAIIRTVECFGMNDLHIISNPDSMSDKKGISKGVAKGATDWI 103

Query: 188 PYIRISNLTDALQKMHS-WGFQTIGLSSDS------------------------------ 216
              +  N  +  +++      + I  S  S                              
Sbjct: 104 NIKQYQNSDECFKELKEKHNCRIIVTSPYSIPQLVLGQKRNSWREDQHPSVYNNLRDEIT 163

Query: 217 -------------KKPLE----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                          P++        +  IA++ G E  G+     + A +   + + G 
Sbjct: 164 ERHVRVPHYIGIENVPIDLLNSDNDYDKPIAVVFGNESHGISNSAIDHADASLTIPLYGF 223

Query: 260 IKALNVSNAAAVALYITQNHF 280
            ++ NV  + A+  Y     F
Sbjct: 224 TESFNVHVSTALTTYYLNEKF 244


>gi|242037305|ref|XP_002466047.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
 gi|241919901|gb|EER93045.1| hypothetical protein SORBIDRAFT_01g050660 [Sorghum bicolor]
          Length = 1767

 Score = 96.6 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 114  LALETAPLLSPTLDAVRNSQLLM--VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            LALE     + T+   R   +++  ++D +  P N+  + R+   F   G++   + S  
Sbjct: 1594 LALEARLHAAETIKQSRQELIVVASLVDRI--P-NLAGLTRTCEVFRAAGLVVADK-SVL 1649

Query: 172  ESAVLAKSASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDK 228
            +       +  A + +P   + + ++   L++    G+  IGL   +  +PL+  +  D+
Sbjct: 1650 QDKQFRLISVTAEKWLPVTEVPVDSVKAYLERKRGEGYSVIGLEQTAHSRPLDGFVFPDR 1709

Query: 229  IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L+LG E +G+         +   +   G++++LNV  + A+A++      
Sbjct: 1710 TVLVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWEYTRQL 1761


>gi|281211908|gb|EFA86070.1| tRNA/rRNA methyltransferase SpoU family protein [Polysphondylium
            pallidum PN500]
          Length = 1626

 Score = 96.6 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 66/156 (42%), Gaps = 5/156 (3%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               Q+++V   + +  N+  ++R++  F+ + +               + +  A + +P 
Sbjct: 1469 PRQQMIIVGTFIENTPNVAGLIRTSEIFNAEEVAIPNIK-LLNDPQFQRVSVAADKWVPI 1527

Query: 190  IRIS--NLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              ++  NLT  L+   + G+  +G+   S  K L       K  L+LG E  G+  +  E
Sbjct: 1528 TEVNRQNLTSYLKAKKAKGYSILGVEQTSQSKNLATFQFPQKCLLLLGQEQNGIPAEYLE 1587

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFA 281
                   +   G+ ++LNV  +A++ ++  +Q    
Sbjct: 1588 LVDYCIEIPQFGVTRSLNVHVSASIVIWEYSQQQLN 1623


>gi|209523630|ref|ZP_03272184.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
 gi|209496035|gb|EDZ96336.1| tRNA/rRNA methyltransferase (SpoU) [Arthrospira maxima CS-328]
          Length = 157

 Score = 96.3 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 15/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVA-------FSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +VL +   P N G I R+  A           G   + RY       L ++      ++P
Sbjct: 8   LVLVNPQIPQNTGNIARTCAATQTPLHLVGPLGFEISDRY-------LKRAGLDYWPYVP 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +++ D        G + +G S+  K+        +   L+ G+E +GL P+     
Sbjct: 61  LKYHTHIEDFQAFHQPLGGRWVGFSARGKQNYVSFQFQENDWLLFGSETEGLPPEVLALC 120

Query: 249 TSMAHLHM-PGIIKALNVSNAAAVALYITQNHFA 281
            +  ++ M    +++LN+S +AAV L+  +    
Sbjct: 121 QATVYIPMCQPNVRSLNLSVSAAVGLFEARRQLG 154


>gi|159036337|ref|YP_001535590.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
 gi|157915172|gb|ABV96599.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora arenicola CNS-205]
          Length = 207

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG ++R+A AF    +    R          + A     +        +   +      
Sbjct: 71  NIGTVVRNANAFLAAEVHIVGRR-----RWNRRGAMVTDRYQHVRHHETIEGFVAWAAGA 125

Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   +G+      +PLE      +  L+ G EG GL    +     +  +   G  +++N
Sbjct: 126 GLSVVGIDNLPGSRPLETTTLPRRCVLLFGQEGPGLSAPARAACDQLFSIAQYGSTRSIN 185

Query: 265 VSNAAAVALYI 275
              A+ +A++ 
Sbjct: 186 AGVASGIAMHA 196


>gi|87310712|ref|ZP_01092839.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
           DSM 3645]
 gi|87286469|gb|EAQ78376.1| RNA methyltransferase, TrmH family protein [Blastopirellula marina
           DSM 3645]
          Length = 166

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
              TLD  R   L++         N+  I+R+A   +   +I T         +  K A 
Sbjct: 11  PPTTLDEPRQ--LIVACCQFRSNVNLSRIVRAASCCAVSRVIVTGN-----MKIDPKIAR 63

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGL 240
              E +P  R  +L   L+++ S G++ +GL  + + + +          L++G E +G 
Sbjct: 64  DGAEKLPISRHRSLPPVLKELKSEGYRLVGLEQTTNSQDIHHFSFVRNTVLVIGNERQGT 123

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                     +  + + G+  + NV+ A  +ALY     F
Sbjct: 124 PDDVLRLLDDVVEIPVYGMPYSFNVATATCMALYEFCRQF 163


>gi|328906380|gb|EGG26155.1| RNA methyltransferase, TrmH family [Propionibacterium sp. P08]
          Length = 196

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG+++R+A AF+   +    R          + A     ++      ++   LQ +   
Sbjct: 59  NIGSVVRTANAFNVSAVHILGRR-----RWNKRGAMVTDRYLHVYHHPDVPSFLQWLDEH 113

Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   +G+       PLE         L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 114 GVTPVGVDNLSGSVPLETAQLPQDCCLVFGSEGPGLTDEIVKGCEQLVAITQYGSTRSMN 173


>gi|313836409|gb|EFS74123.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA2]
 gi|314928873|gb|EFS92704.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL044PA1]
 gi|314971249|gb|EFT15347.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA3]
          Length = 164

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG+++R+A AF+   +    R          + A     ++      ++   LQ +   
Sbjct: 27  NIGSVVRTANAFNVSAVHILGRR-----RWNKRGAMVTDRYLHVYHHPDVPSFLQWLDEH 81

Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   +G+       PLE         L+ G+EG GL  +  +    +  +   G  +++N
Sbjct: 82  GVTPVGVDNLSGSVPLETAQLPQDCCLVFGSEGPGLTDEIVKGCEQLVAITQYGSTRSMN 141


>gi|301095558|ref|XP_002896879.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108629|gb|EEY66681.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 199

 Score = 95.9 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 61/153 (39%), Gaps = 6/153 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI- 192
           L+M    V+   N+  + R+   F+   ++        +       ++ A + +P   + 
Sbjct: 38  LIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPLEEVR 97

Query: 193 ---SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +L  AL +     +  + +  + S   L       K+ L+LG E +G+  +  +  
Sbjct: 98  PQGDDLRRALVRWKREDYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIPVEVLQLV 157

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
                +   G++++LNV  + A+ L+  TQ   
Sbjct: 158 DVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 190


>gi|148554317|ref|YP_001261899.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1]
 gi|148499507|gb|ABQ67761.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1]
          Length = 149

 Score = 95.9 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 5/136 (3%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR A  F     I      P     L ++     E     R ++      +  +
Sbjct: 12  GNVGTILRMAACFGVPVDIIEPCGFPFSERGLRRAGMDYAEAAEISRHADWAAF--ESRA 69

Query: 205 WGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
            G + + L++ +   L++     D I L LG+EG G+     + A     + M    ++L
Sbjct: 70  AG-RIVLLTTAADLTLDKAGFLPDDIVL-LGSEGAGVPRPVHDRADLRVRIPMRPGFRSL 127

Query: 264 NVSNAAAVALYITQNH 279
           NV+ +A +AL      
Sbjct: 128 NVAVSAGIALAEALRQ 143


>gi|145593291|ref|YP_001157588.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
 gi|145302628|gb|ABP53210.1| tRNA/rRNA methyltransferase (SpoU) [Salinispora tropica CNB-440]
          Length = 207

 Score = 95.9 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R          + A     +   
Sbjct: 55  RRHDFHVAIENWQHDLNIGTVVRNANAFLAAEVHIVGRR-----RWNRRGAMVTDRYQHV 109

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +   +      G   +G+      +PLE      +  L+ G EG GL    +   
Sbjct: 110 RHHETIEGFVAWAAGAGLSVVGIDNLPGCRPLETAALPRQCVLLFGQEGPGLSDPARAAC 169

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI 275
             +  +   G  +++N   A+ +A++ 
Sbjct: 170 DQLFSIAQYGSTRSINAGVASGIAMHA 196


>gi|297745670|emb|CBI40924.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score = 95.9 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 4/152 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                ++V   ++   N+  + R+   F   G+      +          +  A + +P +
Sbjct: 1049 QQHFILVASLIDRIPNLAGLARTCEVFKAAGLAIAD-TNILHDKQFQLISVTAEKWVPIV 1107

Query: 191  RIS--NLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +   ++   L+K    GF  +GL   +   PL++ I   KI L+LG E +G+       
Sbjct: 1108 EVPVSSVKVFLEKKKQEGFSILGLEQTANSVPLDKYIFPKKIVLVLGREKEGIPVDIIHI 1167

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   +   G++++LNV  + A+AL+     
Sbjct: 1168 LDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1199


>gi|255325551|ref|ZP_05366651.1| spou rrna methylase family protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297339|gb|EET76656.1| spou rrna methylase family protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score = 95.9 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R          + A     +   
Sbjct: 79  RRHSLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQHL 133

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   ++   +      G   + +  +    PLE     ++  L+ G EG G+    Q+ A
Sbjct: 134 MHHESVEKLIAWAAEEGLTVVAIDNTPGCVPLETAELPERSLLLFGQEGPGVTQAAQDAA 193

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 194 VMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 225


>gi|194397115|ref|YP_002038555.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
 gi|194356782|gb|ACF55230.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
          Length = 86

 Score = 95.9 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +        +  +        +E+ + +   L++G EG+G+ P   E+A  + H+ M G
Sbjct: 8   DETKKVAIPVLATTLSKDSVDYRELPSIENFVLVMGNEGQGISPLMAESADQLVHISMKG 67

Query: 259 IIKALNVSNAAAVALY 274
             ++LNV+ AA +  +
Sbjct: 68  QAESLNVAVAAGILXF 83


>gi|318041386|ref|ZP_07973342.1| RNA methyltransferase [Synechococcus sp. CB0101]
          Length = 160

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+  A   +  +            L ++       +   R ++ 
Sbjct: 4   LVLFQPEIPPNTGNVARTCAATCTELHLIEPLGFEISDRTLKRAGLDYWPWVNLHRHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                +    G + + LS    +P  +        L+ G E  GL  +    A +   + 
Sbjct: 64  AAFRLEQQRRGGRLLALSRHGSQPYTELTYQPDDWLLFGRETSGLPLEVVADADACLAIP 123

Query: 256 MPGIIK------ALNVSNAAAVALYITQNHF 280
           MPG +       +LN++ AA V L+      
Sbjct: 124 MPGSVDHGGGVRSLNLATAAGVVLFEALRQL 154


>gi|118374625|ref|XP_001020500.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila]
 gi|89302267|gb|EAS00255.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
            SB210]
          Length = 3004

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 86/214 (40%), Gaps = 4/214 (1%)

Query: 68   IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
            I+QL   ++A  + D    L     ++ +P   + ++   +     +  E   + +    
Sbjct: 1883 IYQLKEHEDAPPKKDDLWRLKTQEFIQDIPIPDLSEVTNFQRKIDVVQNELDQIEAEKKK 1942

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
              +   +++V   +    N G + R++  F    ++   + +  E       +  A + +
Sbjct: 1943 RRKEKDIIVVASLLEKIPNFGHLTRTSEIFGVSSLVIPNK-AILEEEGFKAISVTAEKWL 2001

Query: 188  PYIRIS--NLTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKT 244
            P   +   +L   L      G++ +GL   SK K ++ +   DK  L+LG E  G+  + 
Sbjct: 2002 PIQEVKEKDLMAFLILKKKLGYKIVGLEQTSKSKMIQHQEFPDKCILLLGREKTGIPLEY 2061

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E       +   G +++LNV  +A + ++   N
Sbjct: 2062 IEILDECVEIPQFGQVRSLNVHVSAVICIWEFVN 2095


>gi|302531148|ref|ZP_07283490.1| RNA methyltransferase [Streptomyces sp. AA4]
 gi|302440043|gb|EFL11859.1| RNA methyltransferase [Streptomyces sp. AA4]
          Length = 219

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++    HNIG ++R+A AF+   +    R          + A     + 
Sbjct: 64  DTRRHPFHVAIENFQHDHNIGTVVRTANAFAAAEVHIVGRR-----RWNRRGAMVTDRYQ 118

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++   L    + G   + +  +   +P+E         L+ G EG GL    Q 
Sbjct: 119 HLRHHEDVASLLNFATAEGLTVVAVDNTPGAEPVETAELPRNCLLLFGQEGPGLSEAAQT 178

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            +  +  +   G  +++N   AA + ++   + H
Sbjct: 179 DSAKVVSIAQFGTTRSINAGVAAGIVMHAWIRQH 212


>gi|297190579|ref|ZP_06907977.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486]
 gi|197717892|gb|EDY61800.1| rRNA methylase SpoU [Streptomyces pristinaespiralis ATCC 25486]
          Length = 190

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEHIPYI--RISNLTDALQKM 202
           N+G + R+  A            +      + ++ A G     P    R  +    L + 
Sbjct: 58  NLGTLARTCDAVGA-------CITVPRFPWVPEALARGNTLRKPVCTHRTGDPLGWLARQ 110

Query: 203 HSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              G + +G  L+ ++ +  +         ++LG E  G+ P+  +       + M G  
Sbjct: 111 RERGARIVGVELADEAVRLADLAPARSPTVMVLGHEQHGIPPEALDLLDECVEIPMVGTG 170

Query: 261 KALNVSNAAAVALY 274
            +LNV+ A ++ALY
Sbjct: 171 SSLNVAVAGSLALY 184


>gi|296534733|ref|ZP_06897111.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296264940|gb|EFH11187.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 176

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 9/157 (5%)

Query: 63  NPSRKIFQL--LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +  + + +L  LA++ A A            P + VPP  + KI G    H G+    AP
Sbjct: 20  HRPQAVLRLFYLASRRAEAGPFCAQLARARKPYREVPPAELAKIAGTT-HHGGIVAIAAP 78

Query: 121 LLSPTLDA-----VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESA 174
              P L A     +    LL VLD V +PHN+GAI RSA  F C  ++ +        S 
Sbjct: 79  RAVPALPAALPQTLFGPGLLPVLDGVGNPHNLGAIARSAAFFGCTSLLLSGDPRQAGLSD 138

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
              +++ G LE +   R  +L  AL  +         
Sbjct: 139 SAWRTSEGGLEALSLYRAPDLPAALGALGRPALTVAA 175


>gi|311740469|ref|ZP_07714297.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304515|gb|EFQ80590.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 237

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R          + A     +   
Sbjct: 84  RRHSLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQHL 138

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   ++   +      G   + +  +    PLE     ++  L+ G EG G+    Q+ A
Sbjct: 139 MHHESVEKLIAWAAEEGLTVVAIDNTPGCVPLETAELPERSLLLFGQEGPGVTQAAQDAA 198

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 199 VMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 230


>gi|314988238|gb|EFT32329.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA2]
 gi|314990324|gb|EFT34415.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA3]
          Length = 164

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 7/142 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R S L + + +     NIG+++R+A AF+   +    R          + A   
Sbjct: 6   ADLDAQR-SPLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR-----RWNRRGAMVT 59

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++      ++   L  +   G   +G+       PLE         L+ G+EG GL  
Sbjct: 60  DRYLHVYHHPDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTD 119

Query: 243 KTQETATSMAHLHMPGIIKALN 264
           +  +    +  +   G  +++N
Sbjct: 120 EVVKGCEQLVAITQYGSTRSMN 141


>gi|313771681|gb|EFS37647.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL074PA1]
 gi|313810504|gb|EFS48218.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA1]
 gi|313818066|gb|EFS55780.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA2]
 gi|313820925|gb|EFS58639.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA1]
 gi|313827061|gb|EFS64775.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA1]
 gi|313831545|gb|EFS69259.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL007PA1]
 gi|313832531|gb|EFS70245.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL056PA1]
 gi|313839272|gb|EFS76986.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL086PA1]
 gi|314926952|gb|EFS90783.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA3]
 gi|314961772|gb|EFT05873.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA2]
 gi|314964756|gb|EFT08856.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA1]
 gi|314974896|gb|EFT18991.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA1]
 gi|314979684|gb|EFT23778.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA2]
 gi|314984577|gb|EFT28669.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA1]
 gi|315082261|gb|EFT54237.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL078PA1]
 gi|327326511|gb|EGE68299.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA3]
 gi|327332778|gb|EGE74510.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL096PA2]
 gi|327335170|gb|EGE76880.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL097PA1]
 gi|327448399|gb|EGE95053.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA2]
 gi|327448473|gb|EGE95127.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL043PA1]
 gi|328757294|gb|EGF70910.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL020PA1]
 gi|328762053|gb|EGF75558.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL099PA1]
          Length = 164

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R S L + + +     NIG+++R+A AF+   +    R          + A   
Sbjct: 6   ADLDAQR-SPLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR-----RWNRRGAMVT 59

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++     S++   L  +   G   +G+       PLE         L+ G+EG GL  
Sbjct: 60  DRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTD 119

Query: 243 KTQETATSMAHLHMPGIIKALN 264
           +  +    +  +   G  +++N
Sbjct: 120 EVVKGCEQLVAITQYGSTRSMN 141


>gi|289425727|ref|ZP_06427482.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|289427937|ref|ZP_06429641.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|295131542|ref|YP_003582205.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
 gi|289153833|gb|EFD02539.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK187]
 gi|289158820|gb|EFD07020.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
 gi|291376685|gb|ADE00540.1| RNA methyltransferase, TrmH family [Propionibacterium acnes SK137]
          Length = 226

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R S L + + +     NIG+++R+A AF+   +    R          + A   
Sbjct: 68  ADLDAQR-SPLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR-----RWNRRGAMVT 121

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++     S++   L  +   G   +G+       PLE         L+ G+EG GL  
Sbjct: 122 DRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTD 181

Query: 243 KTQETATSMAHLHMPGIIKALN 264
           +  +    +  +   G  +++N
Sbjct: 182 EVVKGCEQLVAITQYGSTRSMN 203


>gi|313793789|gb|EFS41820.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA1]
 gi|313803102|gb|EFS44310.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA2]
 gi|313808316|gb|EFS46787.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA2]
 gi|313824005|gb|EFS61719.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL036PA2]
 gi|314978011|gb|EFT22105.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL045PA1]
 gi|315079276|gb|EFT51279.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL053PA2]
 gi|315083769|gb|EFT55745.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA2]
 gi|315087409|gb|EFT59385.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA3]
 gi|315089826|gb|EFT61802.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL072PA1]
 gi|315095489|gb|EFT67465.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL038PA1]
 gi|327449669|gb|EGE96323.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA2]
 gi|327456121|gb|EGF02776.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL092PA1]
 gi|332676410|gb|AEE73226.1| rRNA methylase SpoU family [Propionibacterium acnes 266]
          Length = 196

 Score = 95.5 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R S L + + +     NIG+++R+A AF+   +    R          + A   
Sbjct: 38  ADLDAQR-SPLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR-----RWNRRGAMVT 91

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++     S++   L  +   G   +G+       PLE         L+ G+EG GL  
Sbjct: 92  DRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTD 151

Query: 243 KTQETATSMAHLHMPGIIKALN 264
           +  +    +  +   G  +++N
Sbjct: 152 EVVKGCEQLVAITQYGSTRSMN 173


>gi|227496859|ref|ZP_03927124.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces urogenitalis DSM
           15434]
 gi|226833642|gb|EEH66025.1| tRNA/rRNA methyltransferase (SpoU) [Actinomyces urogenitalis DSM
           15434]
          Length = 225

 Score = 95.5 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R   L + +++V    NIG+I+R+A AF+   +    R          + A     ++
Sbjct: 71  ASRAHGLHVAIENVTQDLNIGSIVRTANAFNVGAVHVVGRR-----RWNKRGAMVTNRYL 125

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                   +  L      G++ I +        LE     ++  L+ G+EG+G+  + + 
Sbjct: 126 DVRHHPEPSGLLTWAAEAGYEPIAIDNGPGSLQLEHAQLPERCLLVFGSEGEGISEELRA 185

Query: 247 TATSMAHLHMPGIIKALNV 265
             T +  +   G  +++NV
Sbjct: 186 GCTRLLRIGQYGSTRSINV 204


>gi|163791737|ref|ZP_02186126.1| rRNA methylase [Carnobacterium sp. AT7]
 gi|159872997|gb|EDP67112.1| rRNA methylase [Carnobacterium sp. AT7]
          Length = 84

 Score = 95.5 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             GF   G   + +    + I+   I  L++G EG G+  +  +  T   ++ + G  ++
Sbjct: 7   EHGFPVYGTELNEEAVSYRTIEPQSIYGLVMGNEGNGMSAELLKRTTKNLYIPIVGQAES 66

Query: 263 LNVSNAAAVALY 274
           LNV+ AA V ++
Sbjct: 67  LNVAVAAGVVMF 78


>gi|17230844|ref|NP_487392.1| hypothetical protein alr3352 [Nostoc sp. PCC 7120]
 gi|17132447|dbj|BAB75051.1| alr3352 [Nostoc sp. PCC 7120]
          Length = 153

 Score = 95.5 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++       L
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHKTL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + +G S        Q        L+ G+E  GL P       +  ++ 
Sbjct: 64  EAFENAHQERGGRLLGFSVGGSSSYIQFPYQADDWLLFGSETTGLPPTVLSACDATLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + AV L+  +    
Sbjct: 124 MAEPGVRSLNLSVSVAVGLFEVRRQLG 150


>gi|117624802|ref|YP_853715.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1]
 gi|115513926|gb|ABJ02001.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1]
          Length = 123

 Score = 95.5 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           ES    ++A G  E++  I   N+ + L      G+  +  SS+  KPL +     K+ L
Sbjct: 13  ESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVL 72

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +LG E +GL    ++       +   G +  LN+S A  V L  +  QN
Sbjct: 73  VLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQN 121


>gi|320170244|gb|EFW47143.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 220

 Score = 95.1 bits (236), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 5/150 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +   H++   N+  I+R+A       I+         + + A+ A    +H+    
Sbjct: 72  RPLRIACSHLHSNVNLSQIVRAASCSGVTQILACGVG----NKLKAEIAREGADHVRLEV 127

Query: 192 ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++L  +LQ   + GF+ + L  + S K +     +    L++G E  GL       A  
Sbjct: 128 RNSLNSSLQAWRAEGFRIVALEQAVSSKSIYDYRFDRNTVLVIGNEKSGLTQDILNLADD 187

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  + + G+  + NVS A A+A+Y     +
Sbjct: 188 ILEIPIYGMPYSHNVSAATAIAIYEYCKQY 217


>gi|50843459|ref|YP_056686.1| rRNA methylase (SpoU family protein) [Propionibacterium acnes
           KPA171202]
 gi|282854793|ref|ZP_06264127.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|50841061|gb|AAT83728.1| rRNA methylase (SpoU family protein) [Propionibacterium acnes
           KPA171202]
 gi|282581939|gb|EFB87322.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J139]
 gi|313813862|gb|EFS51576.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA1]
 gi|313817019|gb|EFS54733.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA1]
 gi|313829825|gb|EFS67539.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL063PA2]
 gi|314916587|gb|EFS80418.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL005PA4]
 gi|314968739|gb|EFT12837.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA1]
 gi|315109623|gb|EFT81599.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA2]
          Length = 196

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R S+L + + +     NIG+++R+A AF+   +    R          + A   
Sbjct: 38  ADLDAQR-SRLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR-----RWNRRGAMVT 91

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++     S++   L  +   G   +G+       PLE         L+ G+EG GL  
Sbjct: 92  DRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTD 151

Query: 243 KTQETATSMAHLHMPGIIKALN 264
           +  +    +  +   G  +++N
Sbjct: 152 EVVKGCEQLVAITQYGSTRSMN 173


>gi|158294780|ref|XP_001237715.2| AGAP005789-PA [Anopheles gambiae str. PEST]
 gi|157015725|gb|EAU76501.2| AGAP005789-PA [Anopheles gambiae str. PEST]
          Length = 1402

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 60/152 (39%), Gaps = 4/152 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
               L++V   VN   N+G + R+   F+   ++         +      +  A + +   
Sbjct: 1244 TDGLIVVASLVNRAPNLGGLARTGEIFAIKQLVINSL-QDIGNKEFQALSMTAEKWLKIG 1302

Query: 190  -IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             ++   + + L++M   G+  +G   +   K + Q     K  L+LG E  GL  +    
Sbjct: 1303 ELKTHRVVEYLREMKEKGYSVVGAEQTTGSKAIHQLQFPKKSVLVLGHEKNGLPAEIIRH 1362

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +  +   G++++LNV    A+ ++     
Sbjct: 1363 LDLIGEIPQFGVVRSLNVHVTGAIFMWEYAKQ 1394


>gi|237739099|ref|ZP_04569580.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423699|gb|EEO38746.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 113

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIA 230
            +  + ++  G++ ++    +    + ++ +    +  I    D +  P  +    +K A
Sbjct: 2   YNEKVIRATMGSILNVNLFYLEK-QEIIKLLKENNYSIIATYLDKEALPYNKIKLKEKNA 60

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +I G EG+G+  +    +     + +    ++LNV+ A+A+ LY  +
Sbjct: 61  VIFGNEGRGICDEFVSISDCKTVIPILSNTESLNVAVASAIILYKFR 107


>gi|320532915|ref|ZP_08033679.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134872|gb|EFW27056.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 236

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R  +L + +++V+   NIG+I+RSA AF+  G+    R          + A     ++
Sbjct: 82  AARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRR-----RWNKRGAMVTNRYL 136

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                    + L    + G++ IG+      +PLE     ++  ++ G+EG+G+  +   
Sbjct: 137 DVRHHPEPGELLAWARAEGYEVIGIDNGPGAQPLETADLPERCLMVFGSEGEGISAELSA 196

Query: 247 TATSMAHLHMPGIIKALN 264
             + +  +   G  +++N
Sbjct: 197 GCSRLLRIGQYGSTRSIN 214


>gi|195056077|ref|XP_001994939.1| GH13300 [Drosophila grimshawi]
 gi|193892702|gb|EDV91568.1| GH13300 [Drosophila grimshawi]
          Length = 1158

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 121  LLSPTLDAV----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                 LD      R  ++++V   ++   N+G + R+        +I     S ++ +  
Sbjct: 990  YPYMELDEADGKHREQEMIVVASLIDKLPNLGGLARTCEVLGVKTLILA-AKSLADKSDF 1048

Query: 177  AKSASGALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALIL 233
               +  A + +    +  + L + L +  S G++ +G    ++          +K  L+L
Sbjct: 1049 TNLSMTAEKTLNIAEVKPTALAEFLIEKQSLGYKVVGAEQTAQSISFTDFKFPEKCILLL 1108

Query: 234  GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            G E  G+             +   G++++LNV    ++ ++      +K
Sbjct: 1109 GHEKHGIPVDLIALLDFAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHSK 1157


>gi|313763818|gb|EFS35182.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL013PA1]
 gi|314924475|gb|EFS88306.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL001PA1]
 gi|314932367|gb|EFS96198.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL067PA1]
 gi|314956676|gb|EFT00928.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL027PA1]
 gi|314959587|gb|EFT03689.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL002PA1]
 gi|314967313|gb|EFT11412.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL082PA2]
 gi|314981716|gb|EFT25809.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA3]
 gi|315092480|gb|EFT64456.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL110PA4]
 gi|315094724|gb|EFT66700.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL060PA1]
 gi|315100138|gb|EFT72114.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL059PA2]
 gi|315102460|gb|EFT74436.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL046PA1]
 gi|315102886|gb|EFT74862.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA2]
 gi|315107804|gb|EFT79780.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL030PA1]
 gi|327328572|gb|EGE70332.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL103PA1]
 gi|327455784|gb|EGF02439.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA3]
 gi|327457929|gb|EGF04584.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL083PA2]
 gi|328757099|gb|EGF70715.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL087PA1]
 gi|328757477|gb|EGF71093.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL025PA2]
          Length = 164

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R S+L + + +     NIG+++R+A AF+   +    R          + A   
Sbjct: 6   ADLDAQR-SRLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR-----RWNRRGAMVT 59

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++     S++   L  +   G   +G+       PLE         L+ G+EG GL  
Sbjct: 60  DRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTD 119

Query: 243 KTQETATSMAHLHMPGIIKALN 264
           +  +    +  +   G  +++N
Sbjct: 120 EVVKGCEQLVAITQYGSTRSMN 141


>gi|46200254|ref|YP_005921.1| RNA methyltransferase, putative [Thermus thermophilus HB27]
 gi|55980023|ref|YP_143320.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|46197882|gb|AAS82294.1| RNA methyltransferase, putative [Thermus thermophilus HB27]
 gi|55771436|dbj|BAD69877.1| RNA methyltransferase [Thermus thermophilus HB8]
          Length = 149

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 2/145 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+A A      +         S  L ++      H+      + 
Sbjct: 4   LVLYQPEIPQNAGNVARTAAALGWPLHLIRPLGFLLSSPKLKRAGLDYWPHVDLRLHDSF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+ +   G +    S+  +  L +    +   L+ G E +GL  +          + 
Sbjct: 64  AAFLEALP-RGARVFAFSARGEASLYEARFREGDYLLFGPESRGLPEEVLARF-PTLKIP 121

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           MPG +++LN++ A  VA Y      
Sbjct: 122 MPGPVRSLNLAVAVGVAAYEAYRQL 146


>gi|306836991|ref|ZP_07469940.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726]
 gi|304567130|gb|EFM42746.1| tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC 49726]
          Length = 242

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R          + A     +   
Sbjct: 89  RRHSLHIAIENFENDGNIGTVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQHL 143

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++   +          + +  +    PLE     ++  L+ G EG G+    Q+ A
Sbjct: 144 RHHESVDKLIAWASEEDLTVVAIDNTPGCVPLETAELPERALLLFGQEGPGVSAAAQDAA 203

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 204 LMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 235


>gi|195053324|ref|XP_001993576.1| GH20351 [Drosophila grimshawi]
 gi|193895446|gb|EDV94312.1| GH20351 [Drosophila grimshawi]
          Length = 1157

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            R  ++++V   ++   N+G + R+        +I     S ++ +     +  A + +  
Sbjct: 1002 REQEMIVVASLIDKLPNLGGLARTCEVLGVKTLILA-AKSLADKSDFTNLSMTAEKTLNI 1060

Query: 190  IRI--SNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQE 246
              +  + L + L +  S G++ +G    ++          +K  L+LG E  G+      
Sbjct: 1061 AEVKPTALAEFLIEKQSLGYKVVGAEQTAQSISFTDFKFPEKCILLLGHEKHGIPVDLIA 1120

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                   +   G++++LNV    ++ ++      +K
Sbjct: 1121 LLDFAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHSK 1156


>gi|160946403|ref|ZP_02093612.1| hypothetical protein PEPMIC_00363 [Parvimonas micra ATCC 33270]
 gi|158447519|gb|EDP24514.1| hypothetical protein PEPMIC_00363 [Parvimonas micra ATCC 33270]
          Length = 98

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKG 239
            GA+     I      + ++++ S G++ I  + S + K LE+   + K  +++G E  G
Sbjct: 1   MGAIFRTNIIDCK--IEKIKELQSGGYRLISTTLSKNSKFLEEFTFDGKNIVVMGNEANG 58

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           +  +  + + +   + M   +++LNVS AAA+ +Y
Sbjct: 59  ISAEMLKISNNHLKIDMDNSMESLNVSIAAAIIMY 93


>gi|321461680|gb|EFX72710.1| hypothetical protein DAPPUDRAFT_58639 [Daphnia pulex]
          Length = 177

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 63/152 (41%), Gaps = 4/152 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + L+++   V+   N+G + R+         + +     +E       +  A + I  +
Sbjct: 19  TNDLIVIASLVDRVPNLGGLCRTCEVLGVRDFVLSSLR-VTEEKDFVSLSVSAEKWINVL 77

Query: 191 RIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            I    L + ++++   G+  +G   + S +PL       K ALILG E +G+  +  + 
Sbjct: 78  EIKPFQLVEYVKQLKLEGYTVVGAEQTASSQPLNHFTFPKKSALILGHEKEGIPVELIQH 137

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII+++NV    A+ ++     
Sbjct: 138 LDVCVEVPQEGIIRSMNVHVTGAIFIWEYARQ 169


>gi|163791249|ref|ZP_02185664.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
 gi|159873453|gb|EDP67542.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
          Length = 132

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 26/158 (16%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M LI   K+E++ + K  H  K R+                   +     + G H +  A
Sbjct: 1   MELILSTKNERVKNWKKLHSKKGRQ-------------------KAGTYLIEGFHLIEEA 41

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           L N +  I +++ ++          +      + T     I K++ +    QG+      
Sbjct: 42  LKNHA-DILEMMISEEIAFEDIPQFDEEKQVEIST----EIAKVLSETETSQGIFAVIQ- 95

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
             +  ++     +  ++LD+V DP N+G ++R+A A  
Sbjct: 96  -KTDLIEKPLLDKPFLLLDNVQDPGNVGTMVRTADAAG 132


>gi|331700240|ref|YP_004336479.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954929|gb|AEA28626.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 228

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R     + +++    HNIG ++R+A AF+  G+    R          + A     + 
Sbjct: 73  ASRAHPFHVAIENFGHDHNIGTVVRTANAFAAAGVHIVGRR-----RWNRRGAMVTDRYQ 127

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 +           G   + +  +     LE      +  L+ G EG GL    + 
Sbjct: 128 QLHHHEDAAALAAWAADRGLPVVAVDNTAGAVRLETTALPRRCVLLFGQEGPGLTDTARA 187

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           +A  +  +   G  +++N   AA + ++   + H
Sbjct: 188 SAARLVSIAQFGSTRSINAGVAAGIVMHAWVREH 221


>gi|314918941|gb|EFS82772.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA1]
 gi|314920962|gb|EFS84793.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL050PA3]
          Length = 164

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 7/142 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LDA R S+L + + +     NIG+++R+A AF+   +    R          + A   
Sbjct: 6   ADLDAQR-SRLHVAIQNWEHDFNIGSVVRTANAFNVAAVHILGRR-----RWNRRGAMVT 59

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             ++     S++   L  +   G   +G+       PLE         L+ G+EG GL  
Sbjct: 60  DRYLHVYHHSDVPSFLHWLDEHGVTPVGVDNLPGSVPLETVQLPQDCCLVFGSEGPGLTD 119

Query: 243 KTQETATSMAHLHMPGIIKALN 264
           +  +    +  +   G  +++N
Sbjct: 120 EVVKGCEQLVAITQYGSTRSMN 141


>gi|118376426|ref|XP_001021395.1| RNA methyltransferase, TrmH family protein [Tetrahymena
           thermophila]
 gi|89303162|gb|EAS01150.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
           SB210]
          Length = 252

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 27/168 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---------------AVLAKSA 180
           ++L ++   +N+G I+RSA AF+ + +    +     +                V+ +  
Sbjct: 21  LLLHNIGKKNNMGIIIRSASAFNFEKVFLISKNEDIFNEEVEGDERKRKRVLHRVVKEFQ 80

Query: 181 S----GALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILG 234
                G    + +    NL +A Q       +  G+  + DSK  +    + D    ++G
Sbjct: 81  MFGNHGTQAQMQFDVFKNLKEAKQYFVQNNIKVCGVEITPDSKSVVTHPFQGD-TVFLMG 139

Query: 235 AEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
            EG GL    ++      ++        +LNVS AA++  +    HFA
Sbjct: 140 NEGAGLIEAHKKICDHFVYIPQYTNKTASLNVSCAASIIFH----HFA 183


>gi|218247018|ref|YP_002372389.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|257060094|ref|YP_003137982.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           8802]
 gi|218167496|gb|ACK66233.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           8801]
 gi|256590260|gb|ACV01147.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           8802]
          Length = 152

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 1/149 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL H   P N G I R+  A   +  +            L ++      ++      
Sbjct: 2   LKIVLVHPQIPPNTGNIARTCAATETELHLVGPLGFELSDRYLKRAGLDYWPYVNLHYHK 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L +          + IG S   + P  Q    +   L+ G+E +GL     E   +  +
Sbjct: 62  DLAEFYSVYQQHTGRLIGFSVRGQSPYHQWTFQENDWLLFGSETEGLPKSVLENCDATLY 121

Query: 254 LHMP-GIIKALNVSNAAAVALYITQNHFA 281
           + M    +++LN+S +  + L+  +   +
Sbjct: 122 IPMSQSKVRSLNLSVSVTIGLFEARRQLS 150


>gi|66362096|ref|XP_628012.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT
            methylase [Cryptosporidium parvum Iowa II]
 gi|46227488|gb|EAK88423.1| tRNA (Gm18) ribose methylase; trm3p; SpoU superfamily - SPOUT
            methylase [Cryptosporidium parvum Iowa II]
          Length = 1808

 Score = 94.7 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 129  VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            +  S L+++   V+   NI  I R+   F  + ++ + +       +  + +  A + +P
Sbjct: 1648 LNRSGLIVIGSLVDKVPNIAGITRTCEVFRANELLLSSKK-VMNDPIFRQISVTAEKWLP 1706

Query: 189  Y--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
               +  + + + +Q+    G++  GL  + S   ++  +  +K  LILG E +G+  +  
Sbjct: 1707 INELEPTKIKEYVQRKRMEGYKIFGLEQTSSSISIKGCVFPEKSVLILGKEKEGIPSEIV 1766

Query: 246  ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                    +   GII++LNV  +A++ +Y     F +
Sbjct: 1767 SIVDQCIEIPQYGIIRSLNVHVSASIFIYEYTTQFMQ 1803


>gi|89357372|gb|ABD72531.1| prespore-specific protein-like [Physarum polycephalum]
          Length = 127

 Score = 94.3 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDAL---QKMHSWGFQTIGLSSD---------SKK 218
             +    ++A G  E +    I+N   A+   +K+   G + I  SS          S K
Sbjct: 2   PLTPAAYRTAQGGAESVDIAAINNEEQAISVIKKLKQKGCKIITTSSHFTENTTSIYSPK 61

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             E  +    + L++G E  G+ P     A +   +   G +++LNV  AAAV  
Sbjct: 62  ASEVFLPTHPVVLLVGNERDGVSPALAAQADASIRIPSTGWVESLNVVQAAAVIF 116


>gi|332023938|gb|EGI64156.1| Putative methyltransferase TARBP1 [Acromyrmex echinatior]
          Length = 828

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 4/156 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D      L++V   V+   N+G I R+   F    ++        +       +  A + 
Sbjct: 670 DTQLQQGLIVVASFVDRSPNLGGIARTCEIFGVKALVVANADCVKDKEFQY-LSVSADKW 728

Query: 187 IPYIRIS--NLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +  +++    L   L    + G+  IG+    +   L       +  L+LG E  G+   
Sbjct: 729 LNILQVKPYELQKFLLDRKNTGWSLIGVEQTVNSTNLMTTTFEKRTILVLGNEKDGIPAN 788

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     +   G+ ++LNV   AA+ ++   N 
Sbjct: 789 FIPLFDKCVEIPQVGVTRSLNVHVTAAICIWQYANQ 824


>gi|68067975|ref|XP_675907.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56495350|emb|CAI05586.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 188

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-S 214
           AF+   I    +   ++       + G   +I     +N+ +  + +++      G   +
Sbjct: 2   AFNVSEIFVVGQ---NKKKTSFFGSMGTHGYIKIRYFTNMIELKEYLNNNNILLYGCEIT 58

Query: 215 DSKKPLEQ--EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIKALNVSNAAAV 271
           +   P+ +   +KN   A + G EG G+  +  +    + ++   G  I +LNVS + A+
Sbjct: 59  NQSIPITKHPFVKNKDTAFLFGNEGTGISEQIIKMCDQIIYIPQYGNGIASLNVSVSCAI 118

Query: 272 AL 273
            L
Sbjct: 119 IL 120


>gi|152968115|ref|YP_001363899.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
 gi|151362632|gb|ABS05635.1| tRNA/rRNA methyltransferase (SpoU) [Kineococcus radiotolerans
           SRS30216]
          Length = 212

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + L + +++     NIG+++R+A A +  G      +         + A     ++
Sbjct: 57  DTRRNPLHVAVENWQHDANIGSVVRTANAVNAAG-----AHVVGRKRWNRRGAMVTDRYL 111

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++ D +      G   +G+   +   PLE      +  L+ G EG GL  +   
Sbjct: 112 TVHHHGDVADLVAWARERGLPIVGIDNVEGSVPLETYDLPRECVLLFGQEGPGLSEEAVA 171

Query: 247 TATSMAHLHMPGIIKALNV 265
               +  +   G  ++LNV
Sbjct: 172 ACVDVLAIAQFGSTRSLNV 190


>gi|313611167|gb|EFR85991.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Listeria
           monocytogenes FSL F2-208]
          Length = 59

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +A+++G+EG G+    +E    + HL M G + +LN S AA++ LY    
Sbjct: 2   PLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 52


>gi|90023109|ref|YP_528936.1| tRNA/rRNA methyltransferase (SpoU) family protein [Saccharophagus
           degradans 2-40]
 gi|89952709|gb|ABD82724.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
          Length = 161

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 6/142 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           + ++++ +V    NIG ++R+A AF  + I    R   S      K+AS       +   
Sbjct: 2   KFVLLIFNVQSNTNIGQLIRTANAFGAEEICVIGRKKFSTYGN-QKTASTTKFRHFF--- 57

Query: 193 SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             + +A +     G+  +G+  ++  K + +         I+G EG G+     +     
Sbjct: 58  -QIDEAFEYYGQAGYDFVGVEITEQAKSINKMRFERDTLFIMGNEGDGIHENILKRCHYC 116

Query: 252 AHLHMPGIIKALNVSNAAAVAL 273
            ++   G   ++NV+ A  +  
Sbjct: 117 VYIPQYGTGASINVNTACGIIF 138


>gi|196016798|ref|XP_002118249.1| hypothetical protein TRIADDRAFT_5097 [Trichoplax adhaerens]
 gi|190579150|gb|EDV19252.1| hypothetical protein TRIADDRAFT_5097 [Trichoplax adhaerens]
          Length = 187

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 5/154 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L++V   ++   N+G + R+        ++ + + +  E+      +  A + IP 
Sbjct: 34  REDGLIVVASLIDKAANLGGLCRTCEILGVSRLVISNK-NFIENREFQSLSVTAHKWIPI 92

Query: 190 ---IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              +R+  L + L  M   G+  +G+   +    L +     +  L+LG E +G+     
Sbjct: 93  DEVVRVEELEEYLISMKQLGYSVVGVEQTANSADLTKYDFAKRSILLLGNEREGIPVPLL 152

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +       +   G I++ NV    AV ++     
Sbjct: 153 KMVDECVAIPQLGTIRSFNVHVTGAVLIWEYSKQ 186


>gi|103486832|ref|YP_616393.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
 gi|98976909|gb|ABF53060.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
          Length = 152

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 47/135 (34%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+A  F     I      P   A L ++           R ++        HS
Sbjct: 12  GNVGTILRTASCFGVPAHIIEPCGFPFGDAALRRAGMDYAARADVRRHADWDGFSGWSHS 71

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              + + L++     L          L+ G+E  G+ P     A     + M    + LN
Sbjct: 72  TAGRLVLLTTAGATRLPDFAFAHGDILLFGSESAGVPPHVHAAAAERVAIPMQPGFRCLN 131

Query: 265 VSNAAAVALYITQNH 279
           V+ AA +AL      
Sbjct: 132 VAVAAGIALAEALRQ 146


>gi|322797134|gb|EFZ19388.1| hypothetical protein SINV_11142 [Solenopsis invicta]
          Length = 430

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 79/198 (39%), Gaps = 9/198 (4%)

Query: 5   SKKKSEKIFSLKDS-----HYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA 59
            +K+++K   +K+S      Y  L+ + +    +    +  +   +   + L G   +  
Sbjct: 69  KEKENQKENEIKESTAIEQKYIALKADDKMISSLMIDVKTKKRREKNSQMLLEGSRLIED 128

Query: 60  ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           A+              N L+ +   + LP    +  +P +TI            + +   
Sbjct: 129 AIQAGVVPKVIFF---NRLSDVLPLS-LPKEVKLYKIPYRTIQLWSNLTTSPGIIGIFEI 184

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P +S    A     L ++ D++ +P N+G+ILR+A A  C+ ++  K         + +S
Sbjct: 185 PDVSNKKPANDAIPLTIICDNIREPGNLGSILRAAAAVGCEKLLLMKGCVDLWEPKVVRS 244

Query: 180 ASGALEHIPYIRISNLTD 197
           A+GA   +P +   +  +
Sbjct: 245 ATGAHFRLPIVTSVSWDE 262



 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 218 KPLEQEIKNDK-IALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           K   +     + + L++G E +G+        +E   +  ++ +   + +LNV  AA + 
Sbjct: 355 KSYYEVDFTKREMVLVIGGETEGISLQSCKLLRERNCTRINIPLTNGVDSLNVGVAAGIV 414

Query: 273 LYITQNHF 280
            +  +  F
Sbjct: 415 TFEMKRQF 422


>gi|258655261|ref|YP_003204417.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258558486|gb|ACV81428.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 224

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG ++R+A AF+   +    R          + A     +   
Sbjct: 71  RRHPLHVAIENFAHDANIGTVVRTANAFAARAVHIVGRR-----RWNRRGAMVTDRYQHL 125

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++   L    + G   + +       P+E         L+ G E  GL  + +  A
Sbjct: 126 NHHPDVASLLAFAGAAGLTVVAVDNLPGSVPVETAELPRDCLLLFGGESAGLSEQARAGA 185

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            +   +   G  +++NV  AA +A++   + H
Sbjct: 186 AATVSIAQFGSTRSINVGVAAGIAMHAWIRRH 217


>gi|120401678|ref|YP_951507.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119954496|gb|ABM11501.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 214

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +DA R   L + +++  +  NIG+++R+A AF+   +    R          
Sbjct: 50  TRDAIIADIDA-RRHPLHIAIENFGNDANIGSVVRTANAFAVHTVHIVGRR-----RWNR 103

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +          + L      G   + +        +E+        LI G E
Sbjct: 104 RGAMVTDRYQRLCHHDTTAELLDFATRAGLTVVAVDNVPGASRIEEASLPRDCLLIFGQE 163

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+    +  A     +   G  +++N   AA +A++   + H
Sbjct: 164 GPGITDDAKAGAPLTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 207


>gi|170079356|ref|YP_001735994.1| RNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169887025|gb|ACB00739.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7002]
          Length = 151

 Score = 93.9 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R+  A   +  +            L ++      H+      +L
Sbjct: 4   LVLVHPQIPPNTGNIARTCAATDTELHLVGPLGFEIGDRHLKRAGLDYWPHVKLSFYPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              LQ   + G + +G S        +    D   L+ G+E +GL  +  +   +   + 
Sbjct: 64  EHFLQAQATRGGRLLGYSVRGTSQYTEFTYQDDDWLLFGSETQGLPAELLQRCDATLTIP 123

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           +    +++LN+S +AAV L+  +    
Sbjct: 124 INKTHVRSLNLSVSAAVGLFEVRRQLG 150


>gi|159027148|emb|CAO86779.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 157

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 1/149 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL +   P N G I R+  A   +  +            L ++      H+  +   
Sbjct: 6   LRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPHVKLMYHL 65

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            + D        G + IG S        +        L+ G+E  G+            +
Sbjct: 66  TIDDFCAYQQKSGGRAIGFSVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDDTVY 125

Query: 254 LHMP-GIIKALNVSNAAAVALYITQNHFA 281
           + M    +++LN+S + A+ L+  +    
Sbjct: 126 IPMAEPGVRSLNLSVSVAIGLFEARRQLG 154


>gi|315657840|ref|ZP_07910720.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315491637|gb|EFU81248.1| rRNA methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 230

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L + +++V    N G+I+R+A       +    R          + A     ++   
Sbjct: 78  EPTLEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRR-----RFNRRGAMVTDRYLHLH 132

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               + D +          +G+ +    +PLE      +  ++ G E +GL P  Q    
Sbjct: 133 HHPEVQDLVSYAAQQELTIVGMDNFSGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALE 192

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  +   G  ++LNV +AAA++++  + 
Sbjct: 193 RLVQITQYGSTRSLNVGHAAAISIWAWRR 221


>gi|319949900|ref|ZP_08023903.1| putative RNA methyltransferase [Dietzia cinnamea P4]
 gi|319436438|gb|EFV91555.1| putative RNA methyltransferase [Dietzia cinnamea P4]
          Length = 227

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 8/166 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +   LD  R     + +++     NIG ++R+A AF    +    R          
Sbjct: 67  RREAIVADLDT-RRHPFHVAIENFGHDANIGTVVRTANAFLAAEVHIVGRR-----RWNR 120

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +       +++  ++   S G   + +      +PLE      +  L+ G E
Sbjct: 121 RGAMVTDRYQHLRHHDDVSALMEWAASEGLPVVAVDNLPGAEPLEAVSLPRECVLLFGQE 180

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
           G G+    +  A     +   G  +++N   AA +A++   + H A
Sbjct: 181 GPGVSDDARLRAARTVSIAQFGSTRSINAGVAAGIAMHAWIREHAA 226


>gi|108797462|ref|YP_637659.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119866547|ref|YP_936499.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|108767881|gb|ABG06603.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119692636|gb|ABL89709.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
          Length = 214

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 6/146 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG+++R+A AF+ D +    R          + A     +   
Sbjct: 61  RRHPLHIAIENFGNDANIGSVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQRL 115

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  + L      G   + + +     PLE      +  LI G EG G+    +  A
Sbjct: 116 RHHDSTAELLDFAAEAGLTAVAVDNIPGAVPLEHTDLPRECLLIFGQEGPGITEDAKTGA 175

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   G  +++N + AA +A++
Sbjct: 176 RLTVSIAAFGSTRSINAAVAAGIAMH 201


>gi|126433083|ref|YP_001068774.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|126232883|gb|ABN96283.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 214

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 6/146 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG+++R+A AF+ D +    R          + A     +   
Sbjct: 61  RRHPLHIAIENFGNDANIGSVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQRL 115

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  + L      G   + + +     PLE      +  LI G EG G+    +  A
Sbjct: 116 RHHDSTAEMLDFAAEAGLTAVAVDNIPGAVPLEHTDLPRECLLIFGQEGPGITDDAKTGA 175

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                +   G  +++N + AA +A++
Sbjct: 176 RLTVSIAAFGSTRSINAAVAAGIAMH 201


>gi|255505416|ref|ZP_05345925.3| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
 gi|255268327|gb|EET61532.1| RNA methyltransferase, TrmH family [Bryantella formatexigens DSM
           14469]
          Length = 167

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 5/153 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L +VL     P N G I R+ VA      +            + ++     + +   R 
Sbjct: 4   RLNIVLFEPEIPSNTGNIGRTCVATGARLHLIEPLGFSLSEKAIKRAGMDYWKELDVTRY 63

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  + L+   + G +    ++ + +   +        L+ G E  G+  +       ++
Sbjct: 64  LDFEEFLE--KNPGAKIYMATTKAPQTYTEVHYEPDCYLMFGKESAGIPEEILLAHQETV 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYI--TQNHFAK 282
             + M G  ++LN+SNA A+ LY    QN FA+
Sbjct: 122 VRIPMLGETRSLNLSNAVAIVLYEALRQNQFAQ 154


>gi|75909401|ref|YP_323697.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75703126|gb|ABA22802.1| RNA methyltransferase TrmH, group 2 [Anabaena variabilis ATCC
           29413]
          Length = 153

 Score = 93.6 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++       +
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHKTI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + +G S        Q        L+ G+E  GL P       +  ++ 
Sbjct: 64  EAFENVHQERGGRLLGFSVSGSSSYIQFPYQADDWLLFGSETTGLPPTVLSACDATLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + AV L+  +    
Sbjct: 124 MAEPGVRSLNLSVSVAVGLFEVRRQLG 150


>gi|302865196|ref|YP_003833833.1| tRNA/rRNA methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302568055|gb|ADL44257.1| tRNA/rRNA methyltransferase (SpoU) [Micromonospora aurantiaca ATCC
           27029]
          Length = 207

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 6/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R          + A     +   
Sbjct: 55  RRHDFHVAIENWQHDFNIGTVVRNANAFLAAEVHIVGRR-----RWNRRGAMVTDRYQHV 109

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                + + +          +G+      +P+E  +   +  L+ G EG GL    +   
Sbjct: 110 RHHPTIEEFVAWARDERLPVVGIDNLPGSRPMETAVLPRRCVLLFGQEGPGLSAVARSAC 169

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            ++  +   G  +++N   A+ +A++     +A
Sbjct: 170 EALFSIAQYGSTRSINAGVASGIAMHAWIRSYA 202


>gi|33865749|ref|NP_897308.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632919|emb|CAE07730.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
           sp. WH 8102]
          Length = 166

 Score = 93.2 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 9/159 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            NS L +VL     P N G I R+  AF     +        +   + ++      H+  
Sbjct: 6   PNSSLRVVLYEPQIPPNTGNIARTCAAFRLPLALIEPLGFCIDDRAVRRAGLDYWPHVQL 65

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
              SNL   L ++     + IG S      L +        L+ G E  GL    ++   
Sbjct: 66  SIHSNLDHLLGQLP-HPHRLIGCSRHGGDSLGEFQFQHGDVLLFGREDNGLPGHVRDQCD 124

Query: 250 SMAHLHMPGIIK--------ALNVSNAAAVALYITQNHF 280
            +  + MPG +         +LN+S A A+  Y   +  
Sbjct: 125 RILTIPMPGGVDADGQGGVRSLNLSVACALVSYTAGHQL 163


>gi|289552629|ref|ZP_06441839.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|298523855|ref|ZP_07011264.1| spou rRNA methylase family protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308231537|ref|ZP_07412811.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308369379|ref|ZP_07417558.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308370389|ref|ZP_07421329.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308371657|ref|ZP_07425698.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308372877|ref|ZP_07430230.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308373986|ref|ZP_07667687.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308375143|ref|ZP_07442854.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308376379|ref|ZP_07438642.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308377409|ref|ZP_07479043.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308378621|ref|ZP_07483239.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308379766|ref|ZP_07487475.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308395297|ref|ZP_07491976.2| RNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|289437261|gb|EFD19754.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|298493649|gb|EFI28943.1| spou rRNA methylase family protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216979|gb|EFO76378.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308327821|gb|EFP16672.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308332174|gb|EFP21025.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308335963|gb|EFP24814.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308339585|gb|EFP28436.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308343439|gb|EFP32290.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308347331|gb|EFP36182.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308351275|gb|EFP40126.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308355928|gb|EFP44779.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308359885|gb|EFP48736.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308363786|gb|EFP52637.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308367456|gb|EFP56307.1| RNA methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323721233|gb|EGB30293.1| RNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
 gi|328457090|gb|AEB02513.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
          Length = 216

 Score = 93.2 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 61  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQ 115

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 116 RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 175

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 176 GAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 209


>gi|15828342|ref|NP_302605.1| RNA methyltransferase [Mycobacterium leprae TN]
 gi|221230819|ref|YP_002504235.1| putative RNA methyltransferase [Mycobacterium leprae Br4923]
 gi|13094035|emb|CAC32002.1| possible RNA methyltransferase [Mycobacterium leprae]
 gi|219933926|emb|CAR72584.1| possible RNA methyltransferase [Mycobacterium leprae Br4923]
          Length = 182

 Score = 93.2 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG+++R+A AF+ D +    R          + A     +   
Sbjct: 29  RRHPFHVAIENFGHDANIGSVVRTANAFAVDTMHIVGRR-----RWNRRGAMVTDRYQRL 83

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    L      G   + + +      LEQ     +  L+ G EG G+  + +  A
Sbjct: 84  CHHDSTASMLDFAAGAGLTVVAVDNIPGAARLEQTTLPRQCLLVFGQEGPGITDEARTGA 143

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
             +  +   G  +++N   AA +A++   + H
Sbjct: 144 AMIVSIAQFGSTRSINAGVAAGIAMHAWIRQH 175


>gi|148660146|ref|YP_001281669.1| RNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148821576|ref|YP_001286330.1| RNA methyltransferase [Mycobacterium tuberculosis F11]
 gi|215429200|ref|ZP_03427119.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|253797303|ref|YP_003030304.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
 gi|260199377|ref|ZP_05766868.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|260203529|ref|ZP_05771020.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|148504298|gb|ABQ72107.1| RNA methyltransferase [Mycobacterium tuberculosis H37Ra]
 gi|148720103|gb|ABR04728.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
           tuberculosis F11]
 gi|253318806|gb|ACT23409.1| RNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
          Length = 220

 Score = 92.8 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 65  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQ 119

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 120 RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 179

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 180 GAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 213


>gi|145296765|ref|YP_001139586.1| hypothetical protein cgR_2669 [Corynebacterium glutamicum R]
 gi|140846685|dbj|BAF55684.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 206

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +D  R+S L + +++  +  NIG ++R+A AF+ + +    R          
Sbjct: 42  TREAIVEDIDTRRHS-LHVAIENFENDANIGTVVRTANAFAVNTVHIVGRR-----RWNR 95

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +   +   ++   L    + G   + +  +    PLE         L+ G E
Sbjct: 96  RGAMVTDRYQHLMHHEDVDSLLAWAIAEGLTIVAIDNTPGSVPLETAELPKNCLLLFGQE 155

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+    +  A     +   G  +++N   AA +A++   + H
Sbjct: 156 GPGVTEAARAGALMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 199


>gi|254363345|ref|ZP_04979391.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|134148859|gb|EBA40904.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
           tuberculosis str. Haarlem]
          Length = 220

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 65  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQ 119

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 120 RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 179

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 180 GAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 213


>gi|221115884|ref|XP_002157148.1| PREDICTED: similar to TAR RNA binding protein 1 [Hydra
           magnipapillata]
          Length = 937

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 61/152 (40%), Gaps = 4/152 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
             ++ S+L++    V    N+G + R+A  F     +   +   +E       +  A + 
Sbjct: 780 QDMKKSELILCAVLVEKIPNLGGLCRTAEIFGISSFLIGSQRYINE-PGFQSLSVSAEKW 838

Query: 187 IPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPK 243
           +   ++    L   L  +   G+  IG+   +K   +   I   K  LILG E  G+   
Sbjct: 839 LDIQQVLPIKLLQYLMDLKEDGYSLIGVEQTAKSSKIGDFIFPKKSVLILGNERTGIPVD 898

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +       +   GII++LNV  + A+ ++ 
Sbjct: 899 LIQVLDECVEIPQVGIIRSLNVHISGAIMVWE 930


>gi|172035635|ref|YP_001802136.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171697089|gb|ACB50070.1| probable tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
          Length = 153

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      +L
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLQYHLDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                       + +G S   K         +   L+ G+E +GL P  Q+    M ++ 
Sbjct: 64  EQFQAYHQQQKGRLLGFSVRGKSCYGDCQFKEDDWLVFGSETEGLPPTFQDQCDQMLYIP 123

Query: 256 MPG-IIKALNVSNAAAVALYITQNHF 280
           MP   +++LN+S + A+ L+      
Sbjct: 124 MPHPEVRSLNLSVSVAIGLFEALRQL 149


>gi|262203919|ref|YP_003275127.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262087266|gb|ACY23234.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 225

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD  R     + +++     NIG ++R+A AF+   +    R          
Sbjct: 61  TREAIVADLDT-RRHPFHVAIENFAHDANIGTVVRTANAFAAAAVHIVGRR-----RWNR 114

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +   +    ++D L      G   + +  +   +PLE      +  L+ G E
Sbjct: 115 RGAMVTDRYQHLMHHETVSDLLAWARVAGLSVVAVDNTPGARPLETVELPRECVLLFGQE 174

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+    Q  A     +   G  +++N   AA +A++   + H
Sbjct: 175 GPGVSDDAQAQADLTVSIAQFGSTRSINAGVAAGIAMHSWVRQH 218


>gi|304390649|ref|ZP_07372602.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326405|gb|EFL93650.1| rRNA methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 230

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L + +++V    N G+I+R+A       +    R          + A     ++   
Sbjct: 78  EPTLEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRR-----RFNRRGAMVTDRYLHLH 132

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               + D +          +G+ +    +PLE      +  ++ G E +GL P  Q    
Sbjct: 133 HHPEVQDLVSYAAQQELTIVGMDNFPGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALE 192

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  +   G  ++LNV +AAA++++  + 
Sbjct: 193 RLVQITQYGSTRSLNVGHAAAISIWAWRR 221


>gi|328542786|ref|YP_004302895.1| RNA methyltransferase, TrmH family [polymorphum gilvum SL003B-26A1]
 gi|326412532|gb|ADZ69595.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
          Length = 157

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 51/138 (36%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR A        +      P   + L ++    LE    IR  +         
Sbjct: 12  PQNTGTILRLAACMGVAVHLIEPAGFPLSDSALRRTGMDYLERAALIRHLDWPAFEAWRR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + + L++ S  P           L+ G E  G+     E A +   + M   +++L
Sbjct: 72  AEGRRLVLLTTKSADPYPHFPFQVSDILLFGRESAGVPAAVHEAADARLTIPMVAGLRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ +AA+ L       A
Sbjct: 132 NVAVSAAMVLGEALRQTA 149


>gi|75761063|ref|ZP_00741062.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491447|gb|EAO54664.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 69

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            P  +       ALI+G EG G+R +         ++ + G  ++LNV+ AA +  Y  Q
Sbjct: 4   SPYGEVTPAGSFALIVGNEGNGVRQEILTKTDQNLYIPIYGGAESLNVAVAAGILTYYLQ 63

Query: 278 NHFA 281
           +  A
Sbjct: 64  SPVA 67


>gi|319935054|ref|ZP_08009497.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319810072|gb|EFW06441.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 147

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 7/140 (5%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           D  N+G ++R+ + F    ++  +         + +++ GA+ H+      N     Q+ 
Sbjct: 2   DMGNMGTMMRTMLGFGYLHLVIIRPAVDIFDPKVIRASMGAIFHLNIQYYDNFESYYQEY 61

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
               F    L     K + Q   N+  +L+ G E  GL             +     I +
Sbjct: 62  KYHEFYPFML--KGAKNIHQISTNNVHSLVFGNESSGLDDTYLNYG-QSVFIPHSETIDS 118

Query: 263 LNVSNAAAVALYITQNHFAK 282
           LN+S A  + L+    HF+K
Sbjct: 119 LNLSMALGLTLF----HFSK 134


>gi|156396442|ref|XP_001637402.1| predicted protein [Nematostella vectensis]
 gi|156224514|gb|EDO45339.1| predicted protein [Nematostella vectensis]
          Length = 171

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIP 188
             +L++V   +N   N+G + R+   F    ++       +      L+ S+S  ++ I 
Sbjct: 9   GGELVVVASLINKAPNLGGLCRTCEIFGAKRLVLGSNEVMNDPYFKGLSVSSSKWVD-IE 67

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R + L + L  M   G+  IG+   +  K L       K  L+LG E +G+  +  + 
Sbjct: 68  QVRPAELNNYLDAMRHDGYSLIGVEQTANSKRLTDFTFPHKTLLLLGNEKEGIPVELIQQ 127

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +   +   G+I++LNV  + A+ ++     
Sbjct: 128 LDACVEIPQVGVIRSLNVHVSGALLIWEYTKQ 159


>gi|307293833|ref|ZP_07573677.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306879984|gb|EFN11201.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 156

 Score = 92.8 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAILR A  FS    I          A L ++A          R +N      +  +
Sbjct: 16  GNVGAILRLAACFSVPVDIVMPMGFAFSDAKLKRAAMDYGASADVTRHANFEAFDAQRRA 75

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + + +SS + + L +        L++G+E  G+    ++ A     + M    ++LN
Sbjct: 76  RGQRLMLMSSHASQRLPEVEFRADDILLMGSESAGVPDAVRDLADVRVRIPMAPGFRSLN 135

Query: 265 VSNAAAVALYITQNH 279
           ++ +  +A+      
Sbjct: 136 IAVSTGIAVAEALRQ 150


>gi|298345662|ref|YP_003718349.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|298235723|gb|ADI66855.1| tRNA/rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
          Length = 198

 Score = 92.8 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L + +++V    N G+I+R+A       +    R          + A     ++   
Sbjct: 46  EPTLEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRR-----RFNRRGAMVTDRYLHLH 100

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               + D +          +G+ +    +PLE      +  ++ G E +GL P  Q    
Sbjct: 101 HHPEVQDLVSYAAQQELTIVGMDNFPGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALE 160

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  +   G  ++LNV +AAA++++  + 
Sbjct: 161 RLVQITQYGSTRSLNVGHAAAISIWAWRR 189


>gi|194744594|ref|XP_001954778.1| GF18440 [Drosophila ananassae]
 gi|190627815|gb|EDV43339.1| GF18440 [Drosophila ananassae]
          Length = 1141

 Score = 92.4 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 5/157 (3%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + ++++V   ++   N+G + R+        +I     S +E +     +  A + +  
Sbjct: 984  EDREIIVVASLIDKLPNLGGLARTCDVLGVKTLIL-GLKSQAEKSDFTNLSMTAEKTLNI 1042

Query: 190  IRI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            + +    L + L      G++ +G    +      +     K  L+LG E  G+      
Sbjct: 1043 VEVKPETLAEFLIGKQLEGYKIVGAEQTAHSTNFTEFKFPKKSILLLGHEKHGIPADLIG 1102

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
                   +   G +++LNV    ++ ++   + H AK
Sbjct: 1103 FLDYAVEIPQFGTVRSLNVHVTGSLFIWEYCKQHLAK 1139


>gi|326772449|ref|ZP_08231733.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
 gi|326637081|gb|EGE37983.1| RNA methyltransferase, TrmH family [Actinomyces viscosus C505]
          Length = 218

 Score = 92.4 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R  +L + +++V+   NIG+I+RSA AF+  G+    R          + A     ++
Sbjct: 64  AARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRR-----RWNKRGAMVTNRYL 118

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                    + L    + G++ IG+      +PLE     ++  ++ G+EG+G+  +   
Sbjct: 119 DVRHHPEPGELLAWARAEGYEVIGIDNGPGAQPLEAADLPERCLMVFGSEGEGISLELSA 178

Query: 247 TATSMAHLHMPGIIKALN 264
             + +  +   G  +++N
Sbjct: 179 GCSRLLRIGQYGSTRSIN 196


>gi|183980676|ref|YP_001848967.1| RNA methyltransferase [Mycobacterium marinum M]
 gi|183174002|gb|ACC39112.1| RNA methyltransferase [Mycobacterium marinum M]
          Length = 214

 Score = 92.4 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG+++R+A AF+ D +    R          + A     +   
Sbjct: 61  RRHPLHIAIENFGHDANIGSVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQRL 115

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +  + L+     G   + +        LE+        L+ G EG G+   T+  A
Sbjct: 116 RHHDSTAELLEFAVGAGLTVVAVDNVPGAARLEETTLPRDCLLVFGQEGPGITDDTRVGA 175

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 176 VVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 207


>gi|154246890|ref|YP_001417848.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
 gi|154160975|gb|ABS68191.1| tRNA/rRNA methyltransferase (SpoU) [Xanthobacter autotrophicus Py2]
          Length = 154

 Score = 92.4 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 51/135 (37%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR    F  +  I      P   A   ++    ++ + + R ++      +  +
Sbjct: 14  QNAGTILRIGACFGIEVHIIEPAGFPVGDAGFRRAGMDYIDQVTWRRHASFAAFDAERRA 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +  ++   +PL          L+ G E  G+       A +   + M   +++LN
Sbjct: 74  EGRRVVLFTTQGAEPLFGFRFQPDDVLLFGRESAGVPESVHAVADARLRIPMRAGVRSLN 133

Query: 265 VSNAAAVALYITQNH 279
           V+ +A +AL      
Sbjct: 134 VAVSAGIALAEALRQ 148


>gi|227502001|ref|ZP_03932050.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
 gi|227077285|gb|EEI15248.1| RNA methyltransferase [Corynebacterium accolens ATCC 49725]
          Length = 257

 Score = 92.4 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++  +  NIG ++R+A AF+ D +    R          + A     +   
Sbjct: 104 RRHSLHIAIENFENDANIGTVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQHL 158

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++   +          + +  +    PLE     ++  L+ G EG G+    Q+ A
Sbjct: 159 RHHESVDKLIAWASEEDLTVVAIDNTPGCVPLETAELPERSLLLFGQEGPGVSAAAQDAA 218

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 219 LMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 250


>gi|302848076|ref|XP_002955571.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f.
           nagariensis]
 gi|300259194|gb|EFJ43424.1| hypothetical protein VOLCADRAFT_35411 [Volvox carteri f.
           nagariensis]
          Length = 148

 Score = 92.4 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 64/149 (42%), Gaps = 4/149 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++V   + +  N+  + R+  +  C+ ++   R +   S    + A  +   +P + +S
Sbjct: 1   LIVVASLLENVPNMAGLCRTCESLGCEALVLPSR-AVVASEAFKRQAVTSERWLPLVEVS 59

Query: 194 --NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
             +L   L+++   G+  IG+  +    PL+      +  L+LG E  G+          
Sbjct: 60  PRDLAAYLREVRGRGYLLIGVEQAAGSVPLQTFTFPQRCLLLLGNEQSGVPQHLIAMLDK 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M G+ ++LN   + A+A++     
Sbjct: 120 CVEIPMLGVTRSLNAHVSGAMAVWQYVQQ 148


>gi|195391444|ref|XP_002054370.1| GJ24409 [Drosophila virilis]
 gi|194152456|gb|EDW67890.1| GJ24409 [Drosophila virilis]
          Length = 1161

 Score = 92.4 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 4/162 (2%)

Query: 122  LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            LS T   +   +L++V   ++   N+G + R+        +I     S  + +     + 
Sbjct: 997  LSKTEGQLNERELIVVASLIDKLPNLGGLARTCEVLGVKTLIL-GAKSFVDKSDFTNLSM 1055

Query: 182  GALEHIPYIRI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGK 238
             A + +  I +  + L + L    S G++ +G    +           +K  L+LG E  
Sbjct: 1056 TAEKTLNIIEVRPAGLGEYLIAKQSMGYKIVGAEQTAHSVSFADFKFPEKCILLLGHEKH 1115

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G+             +   G++++LNV    ++ ++     +
Sbjct: 1116 GIPVDLIALLDYAVEIPQFGVVRSLNVHVTGSLFIWEYCKQY 1157


>gi|145220847|ref|YP_001131525.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|315442199|ref|YP_004075078.1| rRNA methylase [Mycobacterium sp. Spyr1]
 gi|145213333|gb|ABP42737.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|315260502|gb|ADT97243.1| rRNA methylase [Mycobacterium sp. Spyr1]
          Length = 215

 Score = 92.4 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 56/154 (36%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++  +  NIG ++R+A AF+ D +    R          + A     + 
Sbjct: 60  DTRRHPLHVAIENFGNDANIGGVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQ 114

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                      L      G   + +        +E+     +  LI GAEG G+    + 
Sbjct: 115 RLCHHDTTAGLLGFAAEAGLTVVAVDNVPGAVRVEEVSLPRECLLIFGAEGPGITEDAKT 174

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N S AA + ++   + H
Sbjct: 175 GAALAVSIAQFGSTRSINASVAAGIVMHAWIRQH 208


>gi|282901434|ref|ZP_06309359.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193713|gb|EFA68685.1| RNA methyltransferase TrmH, group 2 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 153

 Score = 92.0 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      + 
Sbjct: 4   VVLINPQIPPNTGNIARTCAATATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYHESY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+     G + +G S        Q        L+ G+E  G+     +   S  ++ 
Sbjct: 64  HTFLKVHQQRGGRLLGFSVRGNIDYIQYEFRPDDWLLFGSETTGIPENILDICDSTLYIP 123

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + AVAL+ ++    
Sbjct: 124 MDQPGVRSLNLSVSVAVALFESRRQLG 150


>gi|289668561|ref|ZP_06489636.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 108

 Score = 92.0 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 42/95 (44%)

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           + A G  E +P +++ +   A+ ++   GF       D  + +       ++  ++GAE 
Sbjct: 1   RVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAES 60

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +G+             +   G +++LNV++A AV 
Sbjct: 61  EGMDRAFARDCDLQLSIRGSGKVESLNVASATAVF 95


>gi|156095332|ref|XP_001613701.1| RNA methyltransferase [Plasmodium vivax SaI-1]
 gi|148802575|gb|EDL43974.1| RNA methyltransferase, putative [Plasmodium vivax]
          Length = 313

 Score = 92.0 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 100/276 (36%), Gaps = 30/276 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA-----LNNPSRKIFQL 71
           D+ Y ++ +  +  K +    +K     +  + F      V  +     L   +   F++
Sbjct: 48  DNEYLRISKRSKMMKYIIRLRKKRNFRKKMNSFF------VKESSTIANLARNNNLTFEV 101

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKI------VGKEAVHQGLALETAPLLSPT 125
           + +    +R   D        +      T++ I      V K A +  +A+   P   P 
Sbjct: 102 ILSN---SRSLLDHFKSKCSKLYYADSDTLNYIFRDSLKVNKGAKNDAVAVVKLPEPIPA 158

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            + +R    L+  D +   +N+G IL +A +   D +          +  + +  +G+  
Sbjct: 159 KEPIR---FLLAFDRIRYAYNLGKILNTAYSLGVDCLFYLHNTVDPFNHKVIEMTNGSHL 215

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-----LEQEIKNDKIALILGAEGKGL 240
            I Y +  +  +  Q   +     I   ++   P     +  E +   + LILG E  G 
Sbjct: 216 QISY-QFGSYVELRQFCEAHKLLPIVAHTNGVNPGHILKVTSEQEKKGVCLILGNESTGP 274

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  A     L M  +  +LNVS AA++ ++  
Sbjct: 275 HADVLSFA-KPISLPMHEMTNSLNVSVAASILIHYL 309


>gi|307700467|ref|ZP_07637506.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
 gi|307614452|gb|EFN93682.1| RNA methyltransferase, TrmH family [Mobiluncus mulieris FB024-16]
          Length = 222

 Score = 92.0 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +  +    L+P  + +    L + ++++    NIG+I+R+A       +    R      
Sbjct: 55  ITAQLDWELNPHPEDLSAPCLEIAVENIGHDFNIGSIIRTANGLGVRQVHILGRR----- 109

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
               + A     ++                      +G+      + LE      +  +I
Sbjct: 110 RFNRRGAMVTDRYLHLQFHEVPAALATYAAEKALTIVGMDNLPGAENLESCELPRRCLMI 169

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            G E  G+ P TQE    +  +   G  ++LNV +AAA++++ 
Sbjct: 170 FGEESSGITPATQEILDRLIQITQYGSTRSLNVGHAAAISMWA 212


>gi|269975955|ref|ZP_06182959.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|306817283|ref|ZP_07451029.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|269935783|gb|EEZ92313.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|304649963|gb|EFM47242.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 222

 Score = 92.0 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +  +    L+P  + +    L + ++++    NIG+I+R+A       +    R      
Sbjct: 55  ITAQLDWELNPHPEDLSAPCLEIAVENIGHDFNIGSIIRTANGLGVRQVHILGRR----- 109

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
               + A     ++                      +G+      + LE      +  +I
Sbjct: 110 RFNRRGAMVTDRYLHLQFHEVPAALATYAAEKALTIVGMDNLPGAENLESCELPRRCLMI 169

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            G E  G+ P TQE    +  +   G  ++LNV +AAA++++ 
Sbjct: 170 FGEESSGITPATQEILDRLIQIAQYGSTRSLNVGHAAAISMWA 212


>gi|195450248|ref|XP_002072430.1| GK22831 [Drosophila willistoni]
 gi|194168515|gb|EDW83416.1| GK22831 [Drosophila willistoni]
          Length = 1132

 Score = 92.0 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            +   + +L++V   ++   N+G + R+   F    +I   + S  + +  A  +  A + 
Sbjct: 973  EKATDYELIVVASLIDKLPNLGGLARTCEVFGVKTLIIATK-SDVDKSDFANISMTAEKT 1031

Query: 187  IPYIRISNLT--DALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPK 243
            +    +  +   + L    S G++ +G    +            K  L+LG E  G+   
Sbjct: 1032 LNIEEVKTVALGEFLIGKQSEGYKIVGAEQTAHSTSFSDFRFPKKCVLLLGHEKHGIPVD 1091

Query: 244  TQETATSMAHLHMPGIIKALNVSNAAAVALYIT-QNHFAK 282
                      +   G++++LNV    ++ ++   + H  K
Sbjct: 1092 LIGFLDYAVEIPQFGMVRSLNVHVTGSLFIWEFCKQHMVK 1131


>gi|312375375|gb|EFR22762.1| hypothetical protein AND_14238 [Anopheles darlingi]
          Length = 407

 Score = 92.0 bits (228), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 85/257 (33%), Gaps = 19/257 (7%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRK 67
             ++        Y  L+ N   Y  ++      +   + + L L G   +        R 
Sbjct: 152 SEDRYDKALKLRYTVLQSNDARYGDLKMLVSSRKRREREKMLVLEGRRLILDGCAAGLR- 210

Query: 68  IFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLD 127
           +  ++A+   L       + P   P   V  QT+ +          + +  AP     + 
Sbjct: 211 LEAVVASDVKLLGELGLKSNPKDCPFFLVNRQTMMEWSSLTTSPGLIGVFAAPQNLAEVI 270

Query: 128 A-------VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           A        +   + +V D++ +P+N+G+++RS  A S   +I  K  +        +  
Sbjct: 271 ARNSTAGGSKRLPVTVVCDNIREPNNLGSVIRSCAAVSAQEVILLKGCAHPWDLKCLRGG 330

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIG---LSSDS------KKPLEQEIKN--DKI 229
           +G+   IP      L    +   +     I     + D        +  ++      D +
Sbjct: 331 AGSHFRIPIHGPMELYQLPELTRAGSIFVIADNKSAGDGLAGGFRWEQYDRIDYGSADHV 390

Query: 230 ALILGAEGKGLRPKTQE 246
            L +G E  G+    + 
Sbjct: 391 VLFIGGETYGVSEDVRR 407


>gi|215409889|ref|ZP_03418697.1| RNA methyltransferase [Mycobacterium tuberculosis 94_M4241A]
 gi|254549323|ref|ZP_05139770.1| RNA methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
          Length = 199

 Score = 92.0 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 44  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQ 98

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 99  RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 158

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 159 GAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 192


>gi|16331214|ref|NP_441942.1| hypothetical protein slr0992 [Synechocystis sp. PCC 6803]
 gi|3915412|sp|P74516|TRML_SYNY3 RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase slr0992
 gi|1653708|dbj|BAA18620.1| slr0992 [Synechocystis sp. PCC 6803]
          Length = 153

 Score = 92.0 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++     ++ 
Sbjct: 4   LVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSC 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + +      G   +G S                 L++G+E  GL    ++ +T +  + 
Sbjct: 64  EEFITHWRGQGGNLLGFSVTGTVNFWDYTYQSTDWLMMGSETDGLPQMMRDLSTQLLCIP 123

Query: 256 MPGI-IKALNVSNAAAVALYITQNHF 280
           MP   +++LN++++AA+AL+      
Sbjct: 124 MPHSEVRSLNLASSAAIALFEAGRQL 149


>gi|257455437|ref|ZP_05620672.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
 gi|257447399|gb|EEV22407.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
          Length = 174

 Score = 92.0 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E   L ++     E       +N 
Sbjct: 4   VVLVEPKMPSNTGNIIRLCANTGATLHLVEPLGFALEDKKLRRAGLDYHEWANVKVHANW 63

Query: 196 TDALQKMHSWGFQ-TIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQET--ATS 250
            DA   +   G Q  + L++   KPL  E       IAL+ G+E  GL    +      +
Sbjct: 64  QDAQDSLSQSGVQRIVALTTKLSKPLYDEDFAQLANIALVFGSETAGLPEPIRAAIGQDN 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN+ A+ L+     
Sbjct: 124 WLRLPMLPTSRSLNLSNSVAITLFEVWRQ 152


>gi|227876391|ref|ZP_03994503.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227842932|gb|EEJ53129.1| tRNA/rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 197

 Score = 91.6 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +  +    L+P  + +    L + ++++    NIG+I+R+A       +    R      
Sbjct: 30  ITAQLDWELNPHPEDLSAPCLEIAVENIGHDFNIGSIIRTANGLGVRQVHILGRR----- 84

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
               + A     ++                      +G+      + LE      +  +I
Sbjct: 85  RFNRRGAMVTDRYLHLQFHEVPAALATYAAEKALTIVGMDNLPGAENLESCELPRRCLMI 144

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            G E  G+ P TQE    +  +   G  ++LNV +AAA++++ 
Sbjct: 145 FGEESSGITPATQEILDHLIQITQYGSTRSLNVGHAAAISMWA 187


>gi|302847769|ref|XP_002955418.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
           nagariensis]
 gi|300259260|gb|EFJ43489.1| hypothetical protein VOLCADRAFT_65891 [Volvox carteri f.
           nagariensis]
          Length = 162

 Score = 91.6 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +L+V   ++   N+  + R+        ++     + +   V    +  A + +P   + 
Sbjct: 1   VLLVASLIDKLPNLAGLARTCEVMGAGRLVLADL-AATRDPVFTSVSVTAEQWLPMEEVK 59

Query: 194 N--LTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              L   L++  + G+  +GL   ++   L       K+ L+LG E +G+ P+      +
Sbjct: 60  PAALLAWLERRAAEGYTLVGLEQTAQSVRLPDYRWPAKVVLVLGREKEGIPPEVLSLLDA 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
              +   GII++LNV  + A+ALY    Q  F
Sbjct: 120 TLEIPQRGIIRSLNVHVSGAIALYEYVRQMQF 151


>gi|307154692|ref|YP_003890076.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           7822]
 gi|306984920|gb|ADN16801.1| RNA methyltransferase, TrmH family, group 2 [Cyanothece sp. PCC
           7822]
          Length = 155

 Score = 91.6 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R+  A + +  +            L ++       +      NL
Sbjct: 4   VVLVHPQIPPNTGNIARTCAATATELHLVGPLGFQISDRYLKRAGLDYWPLVSLYYHPNL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L     +G + IG S    +   +        L+ G+E +GL      +  +  ++ 
Sbjct: 64  EDFLTIHQKFGGRLIGFSVSGHQSYLEYSFKSDDWLLFGSETQGLPANLLTSCDATVYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + AV L+  +    
Sbjct: 124 MMEPKVRSLNLSVSVAVGLFEAKRQLG 150


>gi|255076753|ref|XP_002502046.1| predicted protein [Micromonas sp. RCC299]
 gi|226517311|gb|ACO63304.1| predicted protein [Micromonas sp. RCC299]
          Length = 411

 Score = 91.6 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 58/203 (28%), Gaps = 59/203 (29%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA--------------- 174
           R S++L V++   D HN  A++RS  A     I        S                  
Sbjct: 26  RTSRILCVIERCTDEHNYSAVIRSCEALGVQHIWLVDPVDVSYDGIDDGLVDDDDDDGDD 85

Query: 175 ------VLAKSASG---------------------ALEHIPYIRISNLTDALQKMHSWGF 207
                    + A G                     A E             ++ +   G+
Sbjct: 86  DGVDADRARERAGGLLKSHGHGSAWREAHKLFARRANEFTTIREFPTTRACVEALREAGY 145

Query: 208 QTIGLSSDSKKPLEQEIK-----------------NDKIALILGAEGKGLRPKTQETATS 250
                    K                          +K+A++ G E  G   +  E+A +
Sbjct: 146 VIWATDLSQKAICMTHDALRDAGFGDPDDPTATVVPEKLAIVFGTESVGCTREALESADA 205

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
             +L + G   +LN+S AAA+ +
Sbjct: 206 RVYLPLRGFADSLNLSVAAALCI 228


>gi|238925347|ref|YP_002938864.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale
           ATCC 33656]
 gi|238877023|gb|ACR76730.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium rectale
           ATCC 33656]
 gi|291524331|emb|CBK89918.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale DSM
           17629]
 gi|291527619|emb|CBK93205.1| Predicted rRNA methylase (SpoU class) [Eubacterium rectale M104/1]
          Length = 167

 Score = 91.6 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L +VL     P N G I R+ VA      +            L ++     + +    
Sbjct: 2   AKLNIVLHEPEIPANTGNIGRTCVATGTRLHLIEPLGFSLSEKALKRAGMDYWKDLDVTT 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             +  D L+   + G +    ++  +             ++ G E  G+  +   E    
Sbjct: 62  YVDWEDFLE--RNPGAKIYYATTKGRHVYSDAHFEPDCYIMFGKESAGIPEEILKEHPDE 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
              + M G  ++LN+SN+ A+ LY    QN+F
Sbjct: 120 CIRIPMIGETRSLNLSNSVAIVLYEALRQNNF 151


>gi|291300017|ref|YP_003511295.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
           44728]
 gi|290569237|gb|ADD42202.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
           44728]
          Length = 173

 Score = 91.6 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G +LRS  A     +   K     E+     +  G         + +    L +  + 
Sbjct: 41  NLGTLLRSCDAVGA-CLAVPKWSWVPEALRRGNTLPG---KACVHWVHDPEGWLAQRRAE 96

Query: 206 GFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           G + +G  L+ D+ +  +  +   +   +LG E +G+ P+  +    +  + M G   +L
Sbjct: 97  GVRVVGVELAEDATRLADVPMARQRTIAVLGHERRGIPPEVLDLLDEVVEIPMIGAGASL 156

Query: 264 NVSNAAAVALY 274
           NV+ A ++ LY
Sbjct: 157 NVAVAGSLVLY 167


>gi|166368124|ref|YP_001660397.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166090497|dbj|BAG05205.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 157

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 1/149 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL +   P N G I R+  A   +  +            L ++      ++  +   
Sbjct: 6   LRVVLINPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVKLMYHL 65

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            + D        G + IG +        +        L+ G+E  G+            +
Sbjct: 66  TINDFCDYQQKSGGRAIGFTVRGSSSYVEYSYQSGDWLLFGSETDGIPADLLNKCDDTVY 125

Query: 254 LHMP-GIIKALNVSNAAAVALYITQNHFA 281
           + M    +++LN+S + A+ L+  +    
Sbjct: 126 IPMAEPGVRSLNLSVSVAIGLFEARRQLG 154


>gi|182677154|ref|YP_001831300.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633037|gb|ACB93811.1| tRNA/rRNA methyltransferase (SpoU) [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 179

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L++ L   + P N G +LR       +  I      P       ++    L+ +   
Sbjct: 16  KPSLMLALYQPDIPQNCGTMLRLCACLGVEAAIIEPAGFPVSDRHFRRAGMDYLDQVALS 75

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  + T         G + + LS+ + +P           L++G E  G+      +A +
Sbjct: 76  RHVSFTAFRAWQIETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHASADA 135

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + +   +++LNV+ AAA+ L        
Sbjct: 136 RVVIPLRPPMRSLNVAVAAAMVLGEALRQVG 166


>gi|90422442|ref|YP_530812.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB18]
 gi|90104456|gb|ABD86493.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisB18]
          Length = 162

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR     + +  I      P       ++    L+ +  +R    +   Q   
Sbjct: 17  PQNTGTILRLCACLNVEAHIIEPAGFPVSDRHFRRAGMDYLDQVTIMRHDCWSKFEQWRA 76

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + + L++    P      + +  L+LG E  G+       A +   + +   +++L
Sbjct: 77  AAGCRLVLLTTKGLTPYLDYRYSARDVLLLGRESAGVPDDVAAVADARLVIPVQPGLRSL 136

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+ L      
Sbjct: 137 NVAMAAAMVLGEALRQ 152


>gi|194911129|ref|XP_001982293.1| GG11125 [Drosophila erecta]
 gi|190656931|gb|EDV54163.1| GG11125 [Drosophila erecta]
          Length = 1138

 Score = 91.3 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 5/159 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            A  + +L++V   ++   N+G + R+        +I     S +E +     +  A + +
Sbjct: 980  ARDDHELIVVASLIDKLPNLGGLARTCEVLGVKTLIL-GLKSQAEKSDFTNLSMTAEKTL 1038

Query: 188  PYIRI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKT 244
              + +   +L   L +    G++ +G    +            K  L+LG E  G+    
Sbjct: 1039 NILEVNPESLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANL 1098

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
                     +   G++++LNV  A ++ ++   + H  K
Sbjct: 1099 IGFLDYAVEIPQYGLVRSLNVHVAGSLFIWEYCKQHLTK 1137


>gi|224097422|ref|XP_002334612.1| predicted protein [Populus trichocarpa]
 gi|222873484|gb|EEF10615.1| predicted protein [Populus trichocarpa]
          Length = 206

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 17/127 (13%)

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK 217
              G++   + S   S V++K+++G+LE +      N    L      G++ +G S  SK
Sbjct: 66  GVYGVLLCAKNSALLSGVVSKASAGSLELMELRCCKNRMQFLASSAENGWRVLGGSVSSK 125

Query: 218 K-PLEQEIKNDKIALILGAEGKG---------LRPKTQETATSMAHLHMPGIIKALNVSN 267
             PL + +      L+LG+EG G         L   + E  + +A       +++LNVS 
Sbjct: 126 AVPLNEVLPGQPTILVLGSEGTGDEVEGEEINLERSSAEFGSFLA-------VESLNVSV 178

Query: 268 AAAVALY 274
           AA V L+
Sbjct: 179 AAGVLLH 185


>gi|195330985|ref|XP_002032183.1| GM26423 [Drosophila sechellia]
 gi|194121126|gb|EDW43169.1| GM26423 [Drosophila sechellia]
          Length = 618

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 5/159 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A    +L++V   ++   N+G + R+      + +I     S +E +     +  A + +
Sbjct: 460 ARDEHELIVVASLIDKLPNLGGLARTCEVLGVNTLIL-GLKSQAEKSDFTNLSMTAEKTL 518

Query: 188 PYIRI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKT 244
             + +   +L   L +    G++ +G    +            K  L+LG E  G+    
Sbjct: 519 NILEVNPESLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANL 578

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
                    +   G++++LNV  A ++ ++   + H  K
Sbjct: 579 IGFLDYAVEIPQYGLVRSLNVHVAGSLFIWEYCKQHLTK 617


>gi|195572842|ref|XP_002104404.1| GD20941 [Drosophila simulans]
 gi|194200331|gb|EDX13907.1| GD20941 [Drosophila simulans]
          Length = 1138

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 5/159 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            A  + +L++V   ++   N+G + R+      + +I     S +E +     +  A + +
Sbjct: 980  ARDDHELIVVASLIDKLPNLGGLARTCEVLGVNTLIL-GLKSQAEKSDFTNLSMTAEKTL 1038

Query: 188  PYIRI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKT 244
              + +   +L   L +    G++ +G    +            K  L+LG E  G+    
Sbjct: 1039 NILEVNPESLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANL 1098

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
                     +   G++++LNV  A ++ ++   + H  K
Sbjct: 1099 IGFLDYAVEIPQYGLVRSLNVHVAGSLFIWEYCKQHLTK 1137


>gi|300782756|ref|YP_003763047.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
 gi|299792270|gb|ADJ42645.1| RNA methyltransferase SpoU [Amycolatopsis mediterranei U32]
          Length = 144

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 12/134 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPS---ESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           N+G +LR+  A      +    + P        L + A           + +  D L + 
Sbjct: 12  NLGTLLRTCDAVGACLAVPRFPWVPEALRRGNTLRRPAC-------VHWVHDPPDWLARE 64

Query: 203 HSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + G + +G  L+ ++ +  +      +   +LG E  G+ P+  +   S+  + M G  
Sbjct: 65  RAAGTRVVGVELAEEAVRLADLPAARGRTIAVLGHEQTGIPPEVLDLLDSVVEIPMVGTG 124

Query: 261 KALNVSNAAAVALY 274
            +LNV+ A ++ LY
Sbjct: 125 ASLNVAVAGSLVLY 138


>gi|315654256|ref|ZP_07907164.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
 gi|315491291|gb|EFU80908.1| rRNA methylase [Mobiluncus curtisii ATCC 51333]
          Length = 230

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L + +++V    N G+I+R+A       +    R          + A     ++   
Sbjct: 78  EPTLEVAIENVGHDFNTGSIIRTANGLGVRHVHIVGRR-----RFNRRGAMVTDRYLHLH 132

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               + D +          +G+ +    +PLE      +  ++ G E +GL P  Q    
Sbjct: 133 HHPEVQDLVSYAVQQELTIVGMDNFPGAEPLETVTLPSRTLMVFGEESQGLTPAMQNALE 192

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  +   G  ++LNV +AAA+ ++  + 
Sbjct: 193 RLVQITQYGSTRSLNVGHAAAIGIWAWRR 221


>gi|299134646|ref|ZP_07027838.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2]
 gi|298590456|gb|EFI50659.1| tRNA/rRNA methyltransferase (SpoU) [Afipia sp. 1NLS2]
          Length = 158

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR     + +  I      P       ++    L+ +   R  + T       
Sbjct: 11  PQNTGTILRLCACLAVEAHIIEPAGFPVSDRHFRRAGMDYLDQVSISRHVSWTAFRAWQQ 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + + L++            D   L+LG E  G+  +   +A     + +   +++L
Sbjct: 71  ADGGRLLLLTTKGATSYLAHRYEDTDILLLGRESAGVPDEVAASADERLVIPIAEGMRSL 130

Query: 264 NVSNAAAVALYITQNH 279
           NV+  AA+AL      
Sbjct: 131 NVAVTAAMALGEALRQ 146


>gi|88854933|ref|ZP_01129599.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88816094|gb|EAR25950.1| tRNA/rRNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 210

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 7/142 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD  R+    + +++     NIG+I+RSA AF  D +    R          + A   
Sbjct: 55  ADLDVTRH-PFHVAIENWQHDMNIGSIVRSANAFGADTVHIIGRR-----RWNKRGAMVT 108

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             +   +   ++   L+   +     I +        +E      +  L+ G EG GL P
Sbjct: 109 DRYQHVLHHPDVAAFLEWTAANDLPIIAIDNVPGSVIIETFDIPKRCVLLFGQEGPGLSP 168

Query: 243 KTQETATSMAHLHMPGIIKALN 264
           +  E AT +  +   G  +++N
Sbjct: 169 EAIEAATDVVEISQFGSTRSIN 190


>gi|15236590|ref|NP_193496.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
            thaliana]
 gi|332658520|gb|AEE83920.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
            thaliana]
          Length = 1850

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 9/169 (5%)

Query: 116  LETAPLLSPTLDAVRNSQLLM--VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            L +  +    L + R S +L+  ++D +  P N+  + R+   F    +      S    
Sbjct: 1683 LRSRSMEVERLKSGRQSLILVASLVDRI--P-NLAGLARTCEVFKASSLAVADA-SIIHD 1738

Query: 174  AVLAKSASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIA 230
                  +  A + +P   + +++L   L+K    GF  +GL   +    L++     K  
Sbjct: 1739 KQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTV 1798

Query: 231  LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 1799 LVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1847


>gi|33863022|ref|NP_894582.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9313]
 gi|33634939|emb|CAE20925.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9313]
          Length = 166

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 9/163 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D  + S L + L     P N G I R+  AF     +        +   L ++      H
Sbjct: 3   DPNKRSPLRVALYEPRIPPNTGNIARTCAAFRIPLALIEPLGFSLDDRYLRRAGLDYWPH 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +     S+L D  +K      + IG S     PL          L+ G E  GL  K ++
Sbjct: 63  VDLSVHSDL-DTFRKCLPLNHRLIGCSRFGGIPLRSMRFQTGDVLLFGREDTGLPSKVRQ 121

Query: 247 TATSMAHLHMP--------GIIKALNVSNAAAVALYITQNHFA 281
               +  + MP        G +++LN+S A A+  +       
Sbjct: 122 QCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGRQLG 164


>gi|326429925|gb|EGD75495.1| hypothetical protein PTSG_06570 [Salpingoeca sp. ATCC 50818]
          Length = 1687

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIP 188
            + S+L++V   ++   N+G + R+   F+    ++  ++Y+ ++        S   +H  
Sbjct: 1531 QRSKLVVVASLISLGTNLGGLSRTCEIFNVGMLVLAAEKYTRTKEFRALSVTSERWQHFE 1590

Query: 189  YIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
            ++  +NLT+ L+ M   G+  +G+   +    L Q    +   L+LG E KG+       
Sbjct: 1591 FVEPANLTEWLRSMKQQGYTIVGVEQTADSVSLPQVKFPEYTVLLLGDEAKGIPADLLTE 1650

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +   G+ ++LNV  +A++ +Y
Sbjct: 1651 TDVNVEIPQKGVTRSLNVHVSASLLIY 1677


>gi|195502550|ref|XP_002098273.1| GE10291 [Drosophila yakuba]
 gi|194184374|gb|EDW97985.1| GE10291 [Drosophila yakuba]
          Length = 1138

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 5/156 (3%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + +L++V   ++   N+G + R+        +I     S +E +     +  A + +  +
Sbjct: 983  DHELIVVASLIDKLPNLGGLARTCEVLGVKTLIL-GLKSQAEKSDFTNLSMTAEKTLNIL 1041

Query: 191  RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +   +L   L +    G++ +G    +            K  L+LG E  G+       
Sbjct: 1042 EVNPESLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANLIGF 1101

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHFAK 282
                  +   G++++LNV  A ++ ++   + H  K
Sbjct: 1102 LDYAVEIPQYGLVRSLNVHVAGSLFIWEYCKQHLTK 1137


>gi|256028810|ref|ZP_05442644.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289766714|ref|ZP_06526092.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289718269|gb|EFD82281.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 96

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           + +  +    +  I    D +  P  +    +K A++ G EG G+             + 
Sbjct: 9   EIINFLKENDYSIISTYLDKTAIPYNKIELKEKNAIVFGNEGNGISSDFINITDYKTIIP 68

Query: 256 MPGIIKALNVSNAAAVALYITQ 277
           +    ++LNV+ A  + LY  +
Sbjct: 69  ILSNTESLNVAVATGIILYKFR 90


>gi|219556197|ref|ZP_03535273.1| putative rna methyltransferase [Mycobacterium tuberculosis T17]
 gi|289568293|ref|ZP_06448520.1| RNA methyltransferase [Mycobacterium tuberculosis T17]
 gi|289542046|gb|EFD45695.1| RNA methyltransferase [Mycobacterium tuberculosis T17]
          Length = 172

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 17  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQ 71

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 72  RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 132 GAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 165


>gi|126658117|ref|ZP_01729269.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
 gi|126620755|gb|EAZ91472.1| RNA methyltransferase TrmH, group 2 [Cyanothece sp. CCY0110]
          Length = 153

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      +L
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATNTELHLVGPLGFELSDRYLKRAGLDYWPHVKLHYHLDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                       + +G S   K         +   L+ G+E +GL    QE    M ++ 
Sbjct: 64  VQFQAYHQQQKGRLLGFSVRGKSCYGDCKFQEDDWLVFGSESEGLPLTFQEQCDQMLYIP 123

Query: 256 MPG-IIKALNVSNAAAVALYITQNHF 280
           MP   I++LN+S + AV L+      
Sbjct: 124 MPHPKIRSLNLSVSVAVGLFEALRQL 149


>gi|328950187|ref|YP_004367522.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450511|gb|AEB11412.1| tRNA/rRNA methyltransferase (SpoU) [Marinithermus hydrothermalis
           DSM 14884]
          Length = 159

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G I R+  A   +  +            + ++      H+ Y+     
Sbjct: 10  VVLYQPEIPQNVGNIARTCAAVGAELHLVRPFGFRWGDPRMKRAGLDYWPHVRYVLHDTW 69

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+ +     +    ++  ++   +        L+ G E +GL P+  E    +  + 
Sbjct: 70  AAFLETLGPQD-RLFAFTTKGERRYTEVAYRPGDYLLFGPETRGLPPEILEVWPRLV-IP 127

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           MPG +++LN+S A  VA+Y     
Sbjct: 128 MPGPVRSLNLSVAVGVAVYEALRQ 151


>gi|118616019|ref|YP_904351.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118568129|gb|ABL02880.1| RNA methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 218

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG+++R+A AF+ D +    R          + A     +   
Sbjct: 65  RRHPLHIAIENFGHDANIGSVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQRL 119

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++ + L+     G   + +        LE+        L+ G EG G+   T+  A
Sbjct: 120 RHHDSIAELLEFAVGAGLTVVAVDNVPGAARLEETTLPRDCLLVFGREGPGITDDTRVGA 179

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 180 VVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 211


>gi|114769930|ref|ZP_01447540.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255]
 gi|114549635|gb|EAU52517.1| spoU rRNA methylase family protein [alpha proteobacterium HTCC2255]
          Length = 147

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 2/134 (1%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+++R    F     I      P     L +SA    +    +R  +  +  Q     
Sbjct: 13  NLGSMIRLCACFGVSLDIIEPCGFPLSLKSLRRSAMDYADITDMVRHDSW-ETFQANREP 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G + I L++ +   L          L++G E  G+  +      S   L M G  ++LNV
Sbjct: 72  G-RLILLTTKADAILWDFKFKSTDTLVMGRESAGVPNEVHNACDSHIKLPMYGKARSLNV 130

Query: 266 SNAAAVALYITQNH 279
           +  A +AL      
Sbjct: 131 AMTAGMALSEALKQ 144


>gi|15607521|ref|NP_214894.1| RNA methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|15839764|ref|NP_334801.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31791557|ref|NP_854050.1| RNA methyltransferase [Mycobacterium bovis AF2122/97]
 gi|121636293|ref|YP_976516.1| putative rna methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|167968518|ref|ZP_02550795.1| hypothetical RNA methyltransferase (RNA methylase) [Mycobacterium
           tuberculosis H37Ra]
 gi|218752007|ref|ZP_03530803.1| putative rna methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|224988765|ref|YP_002643452.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289441759|ref|ZP_06431503.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289572965|ref|ZP_06453192.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289752409|ref|ZP_06511787.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289760491|ref|ZP_06519869.1| RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis
           GM 1503]
 gi|297632862|ref|ZP_06950642.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN
           4207]
 gi|297729837|ref|ZP_06958955.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN
           R506]
 gi|313657166|ref|ZP_07814046.1| putative RNA methyltransferase [Mycobacterium tuberculosis KZN
           V2475]
 gi|2909501|emb|CAA17386.1| POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|13879892|gb|AAK44615.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31617143|emb|CAD93250.1| POSSIBLE RNA METHYLTRANSFERASE (RNA METHYLASE) [Mycobacterium bovis
           AF2122/97]
 gi|121491940|emb|CAL70403.1| Possible rna methyltransferase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224771878|dbj|BAH24684.1| putative RNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289414678|gb|EFD11918.1| RNA methyltransferase [Mycobacterium tuberculosis T46]
 gi|289537396|gb|EFD41974.1| RNA methyltransferase [Mycobacterium tuberculosis K85]
 gi|289692996|gb|EFD60425.1| RNA methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289707997|gb|EFD72013.1| RNA methyltransferase (RNA methylase) [Mycobacterium tuberculosis
           GM 1503]
          Length = 183

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 28  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQ 82

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 83  RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 142

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 143 GAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 176


>gi|269218069|ref|ZP_06161923.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213004|gb|EEZ79344.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 238

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A   + L + ++++    NIG+I+R+  AF+  G+    R          K A     ++
Sbjct: 89  APSRAALQIAIENLAHDLNIGSIVRTGNAFNVSGVHVVGR-----KRWNRKGALVTDRYV 143

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  + D ++   +  +  + +        LE+    ++  L+ G E  G+ P+   
Sbjct: 144 DVFHRPEVRDVVEWARANDYAMVAVDNPPGSAALEETRLPERCLLVFGQESSGISPELLA 203

Query: 247 TATSMAHLHMPGIIKALNV 265
                  +   G  +++NV
Sbjct: 204 ACDFAVRIEQYGSTRSMNV 222


>gi|198452347|ref|XP_001358733.2| GA15007 [Drosophila pseudoobscura pseudoobscura]
 gi|198131892|gb|EAL27876.2| GA15007 [Drosophila pseudoobscura pseudoobscura]
          Length = 1165

 Score = 90.5 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 5/154 (3%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            N QL++V   ++   N+G + R+        +    +    +S      +  A + +  I
Sbjct: 1012 NKQLVVVASLIDKLPNLGGLARTCEVLGVQTLALGNKAQAGKSD-FTNLSMTAEKTLNII 1070

Query: 191  RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  S +   L +    GF+ +G    +            K  L+LG E  G+       
Sbjct: 1071 ELKPSCIAAFLMEKQMEGFRVVGAEQTAHSVSFANFKFPKKCVLLLGHEKHGIPADLIGF 1130

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
                  +   G++++LNV    ++ ++   + HF
Sbjct: 1131 LDYAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHF 1164


>gi|62391607|ref|YP_227009.1| SPOU rRNA methylase family protein [Corynebacterium glutamicum ATCC
           13032]
 gi|41326949|emb|CAF20793.1| SPOU RRNA METHYLASE FAMILY PROTEIN [Corynebacterium glutamicum ATCC
           13032]
          Length = 222

 Score = 90.5 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +D  R+S L + +++  +  NIG ++R+A AF+ + +    R          
Sbjct: 58  TREAIVEDIDTRRHS-LHVAIENFENDANIGTVVRTANAFAVNTVHIVGRR-----RWNR 111

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +   +   ++   L    +     + +  +    PLE         L+ G E
Sbjct: 112 RGAMVTDRYQHLMHHEDVDSLLAWAIAERLTIVAIDNTPGSVPLETAELPKNCLLLFGQE 171

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+    +  A     +   G  +++N   AA +A++   + H
Sbjct: 172 GPGVTEAARAGALMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 215


>gi|225022536|ref|ZP_03711728.1| hypothetical protein CORMATOL_02576 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680279|ref|ZP_07403087.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
 gi|224944659|gb|EEG25868.1| hypothetical protein CORMATOL_02576 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659810|gb|EFM49309.1| RNA methyltransferase, TrmH family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 230

 Score = 90.5 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++  +  NIG ++R+A AF+ D +    R          + A     + 
Sbjct: 75  DTRRHALHIAIENFENDANIGTVVRTANAFAVDTVHIVGRR-----RWNRRGAMVTDRYQ 129

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +        +      G   + +  +    PLE      +  L+ G EG G+    Q 
Sbjct: 130 HLLHHDTTDSVVAWAAEHGLTVVAIDNTPGSVPLETVELPKRCLLLFGQEGPGVTAAAQA 189

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 190 AAVMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 223


>gi|288956990|ref|YP_003447331.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909298|dbj|BAI70787.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 194

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + ++ P N+G ++R+A AF                  L  ++ GA  H+P      + D 
Sbjct: 10  ERISKPGNVGNLMRTAHAFGASFFFAIDPEPDLRETKLVDTS-GATLHLPLYIHDRVADF 68

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
                      + L+ D+ + L       + A +LG E   L P   E    +  + M  
Sbjct: 69  -TLPKDCALVGVELTDDAVE-LPSFRHPSRAAYVLGPERDSLSPALLERCDHVVKIPMSF 126

Query: 259 IIKALNVSNAAAVALYIT 276
            I   NV  A A+ +Y  
Sbjct: 127 CI---NVGVAGALVMYDR 141


>gi|94265230|ref|ZP_01288990.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|94272199|ref|ZP_01292086.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|93450204|gb|EAT01499.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
 gi|93454264|gb|EAT04577.1| tRNA/rRNA methyltransferase (SpoU) [delta proteobacterium MLMS-1]
          Length = 153

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 4/153 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +      +VL     P N G+I R   A      +       ++   L ++     +H+ 
Sbjct: 1   MPQPPFNVVLVEPEIPPNTGSIARLCGATDTVLHLVHPLGFDTDDKHLKRAGLDYWQHVR 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247
            +  SNL + L        +   LS  +++P           LI G E KGL  +  E  
Sbjct: 61  IVHWSNLEEFLAAQDEN--RLYFLSKKTQRPYTAISFTPGDFLIFGRETKGLPAEILELY 118

Query: 248 ATSMAHLHMPG-IIKALNVSNAAAVALYITQNH 279
           A     + M    I++LN++ AAA+ LY     
Sbjct: 119 ADRCLLIPMSNPHIRSLNLAQAAAIVLYEALRQ 151


>gi|291298242|ref|YP_003509520.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
           44728]
 gi|290567462|gb|ADD40427.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
           44728]
          Length = 205

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +   LD  R+    + +++     NIG ++R+A AF+   +    +          
Sbjct: 43  RREAIVADLDEHRH-DFHVAIENWQHDFNIGTVVRNANAFAAKAVHIVGKR-----RWNR 96

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +        +   +          IG+       PLE         L  G E
Sbjct: 97  RGAMVTDRYQHVHHHDTIDGFVDWAQRHELPIIGIDNLPGSVPLETTTLPSACVLFFGQE 156

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G GL    ++ +  +  +   G  +++N   A+ +A++   ++H
Sbjct: 157 GPGLSRAARDASRLVCSIAQFGSTRSINAGVASGIAMHAWIRDH 200


>gi|307197937|gb|EFN79022.1| RNA methyltransferase-like protein 1 [Harpegnathos saltator]
          Length = 436

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 4/178 (2%)

Query: 20  YAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA 79
           Y  L  N +    +    +  +   +   + L G   +  A+              N LA
Sbjct: 100 YKPLDENDKFISSLMINIRTKKRREKNGQILLEGSRLIQDAIQAGVMPQIIFF---NRLA 156

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLD 139
            +    +LP    +  +P +TI              +   P +     A     L ++ D
Sbjct: 157 DV-LQLSLPKEVQLYKIPYRTIQLWSTLTTSPGIFGIFDIPDVENNTPANDAIPLTIICD 215

Query: 140 HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           ++ +P N+G+I+R+A A  C+ ++  K         + + A GA   +   R  +  D
Sbjct: 216 NIREPGNLGSIIRTAAAVGCEKLLLMKGCVDIWEPKVLRGAVGAHFRVSIHRSLSWDD 273



 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 218 KPLEQEIKNDK-IALILGAEGKGLRPKTQETATSM-------AHLHMPGIIKALNVSNAA 269
            P        K + LI+G E +G+     ++   +        ++ +   I++LN ++A 
Sbjct: 361 VPYHTLDFAKKEVVLIIGGETEGIS---LQSCDLLRDRNCIRVNISLTNGIESLNTASAL 417

Query: 270 AVALYITQNHF 280
           +V  +  +  F
Sbjct: 418 SVITFEIRRQF 428


>gi|254422130|ref|ZP_05035848.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196189619|gb|EDX84583.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 161

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A      +            L ++      ++      ++
Sbjct: 4   IVLVNPEIPPNTGNIARTCAATETPLHLVMPLGFELSDRYLKRAGLDYWPYVDLHIHQSI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D  Q   + G + IG S+ +     Q        L+ G E KGL  +  E    +  + 
Sbjct: 64  EDFWQHAQAKGGKLIGYSAKATAVYTQLTYRRDDWLLFGCESKGLSAEVLEQCDVVTTIP 123

Query: 256 MP--GIIKALNVSNAAAVALYITQNH 279
           M     +++LN+S  AAV L+     
Sbjct: 124 MSDRRHVRSLNLSVCAAVGLFEAIRQ 149


>gi|329946190|ref|ZP_08293803.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328527788|gb|EGF54779.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 245

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R  +L + +++V+   NIG+I+RSA AF+  G+    R          + A     ++
Sbjct: 91  AARAHRLHIAIENVSQDLNIGSIVRSANAFNVAGVHIIGRR-----RWNKRGAMVTNRYL 145

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                    + L    + G++ IG+      +PLE     ++  ++ G+EG+G+  +   
Sbjct: 146 DVRHHPEPGELLDWAAASGYEVIGIDNGPGARPLEAAALPERCLMVFGSEGEGISAELSA 205

Query: 247 TATSMAHLHMPGIIKALN 264
              S+  +   G  +++N
Sbjct: 206 GCASLLRIGQYGSTRSIN 223


>gi|209880764|ref|XP_002141821.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
            RN66]
 gi|209557427|gb|EEA07472.1| RNA methyltransferase, TrmH family protein [Cryptosporidium muris
            RN66]
          Length = 1629

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 4/153 (2%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + S L+++   ++   N+  + R+   F   G +  K        +  + +  A + +P 
Sbjct: 1473 KRSDLIVIGTLIDKIPNLAGLTRTCEVFKV-GKLLLKTRKVLNDPIFRQISVTAEKWLPI 1531

Query: 190  --IRISNLTDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQE 246
              +R SN+   +  M   G+  I +   +   L    I   K  LILG E +G+      
Sbjct: 1532 DELRESNICKYIHSMRLQGYIIIAVEQTASSILLPDFIFPKKSILILGKEKEGIPCDIIS 1591

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   +   G+I++LNV  +A++ +Y   N 
Sbjct: 1592 MVDKCLEIPQYGLIRSLNVHVSASICIYAYSNQ 1624


>gi|257057786|ref|YP_003135618.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
 gi|256587658|gb|ACU98791.1| rRNA methylase [Saccharomonospora viridis DSM 43017]
          Length = 238

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 61/164 (37%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +   LD  R     + +++    HNIG ++R+A AF+   +    +          
Sbjct: 64  RREAIVADLDE-RRHPFHVAIENFQHDHNIGTVVRTANAFAAAAVHIVGKR-----RWNR 117

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +        ++  +      G   + +  +   +P+E      +  L+ G E
Sbjct: 118 RGAMVTDRYQHLHHHPQVSGLVDYATERGLTIVAVDNTPGAQPVETVRLPRECVLLFGQE 177

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G GL    Q+ A  +  +   G  +++N   AA + ++   + H
Sbjct: 178 GPGLSEDAQQAAELVVSIAQFGSTRSINAGVAAGIVMHTWVRQH 221


>gi|153815564|ref|ZP_01968232.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756]
 gi|317502183|ref|ZP_07960357.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088748|ref|ZP_08337658.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847206|gb|EDK24124.1| hypothetical protein RUMTOR_01800 [Ruminococcus torques ATCC 27756]
 gi|316896392|gb|EFV18489.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407271|gb|EGG86774.1| hypothetical protein HMPREF1025_01241 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 167

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 5/150 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++       +      + 
Sbjct: 4   IVLYEPEIPANTGNIGRTCVATGTRLHLIEPLGFKLSEKALKRAGMDYWNDLDVTTYIDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+   + G +    ++ +KK   +        ++ G E  G+  +   +   +   +
Sbjct: 64  ADFLE--KNPGAKIYMATTKAKKVYTEAAYEPDCYIMFGKESAGIPEEILVDHEDTCVRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFAK 282
            M G I++LN+ N+ AV LY    QN FAK
Sbjct: 122 PMMGQIRSLNLGNSVAVVLYEALRQNGFAK 151


>gi|220926822|ref|YP_002502124.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
 gi|219951429|gb|ACL61821.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
           2060]
          Length = 154

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 47/136 (34%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A        I            L +S    L+H+   R  + +       
Sbjct: 12  PQNTGTMLRLAACLGAAVEIIEPAGFDVSDRHLRRSGLDYLDHVTITRHCSFSAFEAWRR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + +  ++    P           L++G E  G+       A +   + +   +++L
Sbjct: 72  EAGLRLVLATTAGALPYTDLAYGPDDCLLVGRESAGVPEAVHAAADARVVIPLRAGLRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+ L      
Sbjct: 132 NVAVAAAMILGEAMRQ 147


>gi|238917775|ref|YP_002931292.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens
           ATCC 27750]
 gi|238873135|gb|ACR72845.1| RNA methyltransferase, TrmH family, group 2 [Eubacterium eligens
           ATCC 27750]
          Length = 165

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           +L ++     + +      + 
Sbjct: 4   IVLHEPEMPANTGNIGRTCVATGARLHLIGPLGFKINDKMLKRAGLDYWDKLDVTEYDDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L    + G +    ++ + K   +    +   ++ G E  G+  +   +   +   +
Sbjct: 64  NDFLA--KNPGAKVYMATTKAHKTYTEVNYEEDCYIMFGKESAGIPEEILVDNEDTCIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+SN+ A+ LY     
Sbjct: 122 PMIGDIRSLNLSNSVAIVLYEALRQ 146


>gi|291535630|emb|CBL08742.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
           M50/1]
 gi|291540875|emb|CBL13986.1| Predicted rRNA methylase (SpoU class) [Roseburia intestinalis
           XB6B4]
          Length = 167

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L +VL     P N G I R+ VA      +        +   + ++       +    
Sbjct: 2   AKLNIVLYEPEIPANTGNIGRTCVATGTRLHLIEPLGFHLDEKSIKRAGMDYWSELDVTT 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             N  D  +   + G +    ++  +    +        ++ G E  G+  +  +    +
Sbjct: 62  YVNWDDFCE--KNPGAKIYMATTKGRHVYTEVSYEPDCYIMFGKESAGIPEEILKANPDT 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
              + M G  ++LN+SN+ A+ LY    QN F
Sbjct: 120 CVRIPMIGETRSLNLSNSVAIVLYEALRQNQF 151


>gi|257413426|ref|ZP_04743012.2| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
 gi|257203592|gb|EEV01877.1| RNA methyltransferase, TrmH family [Roseburia intestinalis L1-82]
          Length = 171

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L +VL     P N G I R+ VA      +        +   + ++       +    
Sbjct: 6   AKLNIVLYEPEIPANTGNIGRTCVATGTRLHLIEPLGFHLDEKSIKRAGMDYWSELDVTT 65

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             N  D  +   + G +    ++  +    +        ++ G E  G+  +  +    +
Sbjct: 66  YVNWDDFCE--KNPGAKIYMATTKGRHVYTEVSYEPDCYIMFGKESAGIPEEILKANPDT 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
              + M G  ++LN+SN+ A+ LY    QN F
Sbjct: 124 CVRIPMIGETRSLNLSNSVAIVLYEALRQNQF 155


>gi|240137241|ref|YP_002961710.1| putative rRNA methylase [Methylobacterium extorquens AM1]
 gi|240007207|gb|ACS38433.1| putative rRNA methylase [Methylobacterium extorquens AM1]
          Length = 149

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A        I            L +S    L+H+   R  +         
Sbjct: 12  PQNTGTMLRMAACLGIAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWEAFEAWRR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + +  ++    P  Q    D   L++G E  G+       A +   + +   +++L
Sbjct: 72  ETGIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHAAADARVVVPIRPGLRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+  AA+ L        
Sbjct: 132 NVAVCAAMMLGEAIRQVG 149


>gi|297800328|ref|XP_002868048.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313884|gb|EFH44307.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1852

 Score = 90.1 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 70/169 (41%), Gaps = 9/169 (5%)

Query: 116  LETAPLLSPTLDAVRNSQLLM--VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            L +  +    L + R S +L+  ++D +  P N+  + R+   F    +      +    
Sbjct: 1684 LRSRSMEVERLKSGRQSLILVASLVDRI--P-NLAGLARTCEVFKASNLAVADA-NIIHD 1739

Query: 174  AVLAKSASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIA 230
                  +  A + +P   + +++L   L+K    GF  +GL   +    L++     K  
Sbjct: 1740 KQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTV 1799

Query: 231  LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 1800 LVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 1848


>gi|296113212|ref|YP_003627150.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|295920906|gb|ADG61257.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|326560205|gb|EGE10593.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           7169]
 gi|326562764|gb|EGE13060.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           103P14B1]
 gi|326564943|gb|EGE15145.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           46P47B1]
 gi|326566634|gb|EGE16776.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
 gi|326567874|gb|EGE17975.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           12P80B1]
 gi|326570284|gb|EGE20329.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
 gi|326571021|gb|EGE21045.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
 gi|326573319|gb|EGE23287.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           101P30B1]
 gi|326575785|gb|EGE25708.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           CO72]
 gi|326576865|gb|EGE26771.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis
           O35E]
          Length = 181

 Score = 90.1 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P+N G+I+R          +        +   L ++     E+       N  +    + 
Sbjct: 19  PNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALK 78

Query: 204 SWGF-QTIGLSSDSKKPLEQ-----EIKNDKIALILGAEGKGLRPKTQET--ATSMAHLH 255
           S G  + + +++   +P  +     +    K+AL+ G+E  GL  + +    A     L 
Sbjct: 79  SLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLP 138

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           M    ++LN++N+  + LY       
Sbjct: 139 MLPDSRSLNLANSVGICLYEVWRQLG 164


>gi|332030022|gb|EGI69847.1| RNA methyltransferase-like protein 1 [Acromyrmex echinatior]
          Length = 438

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 100/342 (29%), Gaps = 79/342 (23%)

Query: 14  SLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLA 73
           S     Y  L  + +    +    +  +   +   + L G   +  A+           +
Sbjct: 93  STTKPKYIALDADDKLISSLMIDIKTKKKREKNRQMLLEGFRLIEDAIQAGIVAKVIFFS 152

Query: 74  TKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQ 133
             + +  L     LP    +  +P +TI            + +   P +     A     
Sbjct: 153 RLSDVLPLS----LPKEVKLYKIPYRTIQLWSNLITSPGIIGIFEIPDVDTKEPAENAIP 208

Query: 134 LLMVLDHVNDPHNIGAI--------------------------LRSAVAFSCDGIITTKR 167
           L ++ D++ +P N+G I                          LRSA+       I T  
Sbjct: 209 LTIICDNIREPGNLGTIVRAAAAVGCEKLLLMKGCVDLWEPKVLRSAIGAHFRLPIFTSI 268

Query: 168 YSPSESAVLAKSAS-------------------------GALEHIP--YIRISNLTDALQ 200
                  +++  ++                         G+   +   Y++  NL    +
Sbjct: 269 SWDEIPTLISDESAIFLADNNIAYENVLTDFKMNPDINEGSSIQVNDNYVKQDNLDAHNE 328

Query: 201 KMHSWGF-----QTIGLSSDSK------------KPLEQEIKNDK-IALILGAEGKGLR- 241
           ++          QT   ++ +K            KP        + + L++G E +G+  
Sbjct: 329 QIQDNTINELIDQTYKSTAKTKLLVKQLVSQLPVKPYYALDFTKREVVLVIGGETEGISL 388

Query: 242 ---PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                 +    +  ++ +   I +LNV  A  +  +  +  F
Sbjct: 389 ESCKLLRSRNCTRVNIPLTNGIDSLNVGVAVGIVTFEMKRQF 430


>gi|215444463|ref|ZP_03431215.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
          Length = 199

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 44  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAVVTDRYQ 98

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 99  RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 158

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 159 GAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 192


>gi|83594701|ref|YP_428453.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170]
 gi|83577615|gb|ABC24166.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC
           11170]
          Length = 203

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 8/139 (5%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + V+ P+N+G + R+A AF    + T       E      ++  AL  +P+ R   + D 
Sbjct: 14  EGVSKPYNVGNVFRTAHAFGASFVFTVAANYRQEEGAKVDTSD-ALASLPFYRFGEVDDM 72

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQETATSMAHLHMP 257
           +      G + +GL    +       ++   A  +LGAE  GL P        +  + M 
Sbjct: 73  MLP---KGCKLVGLEIVPESIDLPSFRHPSCAAYVLGAERHGLSPAMLARCDHVVKIPMR 129

Query: 258 GIIKALNVSNAAAVALYIT 276
             I   N+  A A+ LY  
Sbjct: 130 FSI---NLGMAGAIVLYDR 145


>gi|220907253|ref|YP_002482564.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 7425]
 gi|219863864|gb|ACL44203.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7425]
          Length = 152

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R+  A   +  +            L ++       +      + 
Sbjct: 3   VVLVHPQIPPNTGNIARTCAATQTELHLVEPLGFELSDRYLKRAGLDYWPFVHLTCHPDW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q +   G + IG  +  +    Q        L+ G+E  GL  +         ++ 
Sbjct: 63  PSFTQVVAKRGGRLIGFDTTGESNAFQFKFAADDWLLFGSETDGLPAEVLVACDDTVYIP 122

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + A+ L+  +    
Sbjct: 123 MGQPGVRSLNLSVSVAIGLFEARRQLG 149


>gi|282896206|ref|ZP_06304229.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
 gi|281198895|gb|EFA73773.1| RNA methyltransferase TrmH, group 2 [Raphidiopsis brookii D9]
          Length = 153

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A + +  +            L ++      H+      + 
Sbjct: 4   VVLINPQIPPNTGNIARTCAATATELHLVGPLGFEITDRYLKRAGLDYWPHVKLNYHESY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+     G + +G S        Q   +    L+ G+E  G+     +   S  ++ 
Sbjct: 64  HTFLKVHQQRGGRLLGFSVRGNINYIQHEFHPDDWLLFGSETTGIPKNILDICDSTLYIP 123

Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + AVAL+ ++   
Sbjct: 124 MDQPGVRSLNLSVSVAVALFESRRQL 149


>gi|146339026|ref|YP_001204074.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146191832|emb|CAL75837.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 161

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (35%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR          I              ++    L+H+ + R  + +       
Sbjct: 11  PQNTGTILRLCACLGLAAHIIEPAGFAVSDRQFRRAGMDYLDHLDWRRHDSWSAFEAWRA 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G++ + L++                L+LG E  G+     + A +   + +   +++L
Sbjct: 71  TQGYRLLLLTTKGATSYLDISYRPDDILLLGRESVGVPATVADAADARLRIPLKPGMRSL 130

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ A+A+A         
Sbjct: 131 NVAIASAMAAGEALRQVG 148


>gi|332671651|ref|YP_004454659.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332340689|gb|AEE47272.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 173

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 15/162 (9%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           +  P      D +  + L   L  V    N+G +LR+  A             P     L
Sbjct: 17  DRRPHPHSCWDQLVVAPLWP-LHGV----NLGTLLRTCDAVGA---CLAVPRLPWVPEAL 68

Query: 177 AKSASGALEHIP--YIRISNLTDALQKMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALI 232
            +   G     P       N    L++    G   +G  L+ +S +  +      +  ++
Sbjct: 69  ER---GNTLRHPACVHWTGNRVRWLERQRDRGSTVVGVELAEESVRLGDLPAARRRTVVV 125

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           LG E  G+ P+  +       + M G   +LNV+ A ++ LY
Sbjct: 126 LGHEQTGIPPEALDLLDVTVEIPMVGTGASLNVAVAGSLVLY 167


>gi|294786700|ref|ZP_06751954.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315226315|ref|ZP_07868103.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|294485533|gb|EFG33167.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|315120447|gb|EFT83579.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 247

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 28/181 (15%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD+       + +++     NIG+++R+A AF+   +     +         
Sbjct: 66  TVEAIKADLDSRGRHSFEVAIENWTHDFNIGSMVRTANAFTAKRVHIIGPH-----KWNR 120

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWG----------------------FQTIGLS-S 214
           K +     +       ++ + +  + +                         + + L   
Sbjct: 121 KGSLMTELYQTIDYHPSIDEFVADIRARDRKESQEAAAKEGKEGNKAQPIHTRIVALDIV 180

Query: 215 DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
               P+E     ++  L+ GAEG GL  K    A  + ++   G +++LN   AAAV+++
Sbjct: 181 PGAVPIETYRFPERCVLLFGAEGPGLTRKALGIADDVVYITQYGSVRSLNAGAAAAVSMH 240

Query: 275 I 275
            
Sbjct: 241 A 241


>gi|215402130|ref|ZP_03414311.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289744077|ref|ZP_06503455.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289684605|gb|EFD52093.1| RNA methyltransferase [Mycobacterium tuberculosis 02_1987]
          Length = 220

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 65  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAVVTDRYQ 119

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 120 RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 179

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYI 275
            A     +   G  +++N   AA +A++ 
Sbjct: 180 GAAVTVSIAQFGSTRSINAGVAAGIAMHA 208


>gi|226506254|ref|NP_001145273.1| hypothetical protein LOC100278565 [Zea mays]
 gi|195653915|gb|ACG46425.1| hypothetical protein [Zea mays]
          Length = 286

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 74/169 (43%), Gaps = 5/169 (2%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           LALE     + T+   R  +L++V   V    N+  + R+   F   G++   + S  + 
Sbjct: 115 LALEARLHAAETIKQSRQ-ELIVVASLVERIPNLAGLTRTCEVFRAAGLVVADK-SVLQD 172

Query: 174 AVLAKSASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIA 230
                 +  A + +P   + + ++   L++    G+  IGL   +   PL++    D+  
Sbjct: 173 KQFRLISVTAEKWLPVTEVPVDSVKAYLERKRGDGYSVIGLEQTANSMPLDRFGFPDRTV 232

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L+LG E +G+         +   +   G++++LNV  + A+A++     
Sbjct: 233 LVLGREKEGIPVDIIHILDACVEIPQLGVVRSLNVHVSGAIAVWEYTRQ 281


>gi|195145142|ref|XP_002013555.1| GL24204 [Drosophila persimilis]
 gi|194102498|gb|EDW24541.1| GL24204 [Drosophila persimilis]
          Length = 883

 Score = 89.7 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 58/154 (37%), Gaps = 5/154 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N QL++V   ++   N+G + R+        +      + +  +     +  A + +  I
Sbjct: 730 NKQLVVVASLIDKLPNLGGLARTCEVLGVQTLAL-GNKAQTGKSDFTNLSMTAEKTLNII 788

Query: 191 RI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +  S +   L +    GF+ +G    +            K  L+LG E  G+       
Sbjct: 789 ELKPSCIAAFLMEKQMEGFRVVGAEQTAHSVSFANFKFPKKCVLLLGHEKHGIPADLIGF 848

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
                 +   G++++LNV    ++ ++   + HF
Sbjct: 849 LDYAVEIPQFGVVRSLNVHVTGSLFIWEYCKQHF 882


>gi|21355819|ref|NP_651031.1| CG18596 [Drosophila melanogaster]
 gi|17862774|gb|AAL39864.1| LP02352p [Drosophila melanogaster]
 gi|23176042|gb|AAF55981.2| CG18596 [Drosophila melanogaster]
 gi|220960120|gb|ACL92596.1| CG18596-PA [synthetic construct]
          Length = 1136

 Score = 89.7 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 60/151 (39%), Gaps = 4/151 (2%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            A  + +L++V   ++   N+G + R+      + +I     S +E +     +  A + +
Sbjct: 980  ARDDHELIVVASLIDKLPNLGGLARTCEVLGVNTLIL-GLKSQAEKSDFTNLSMTAEKTL 1038

Query: 188  PYIRI--SNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKT 244
              + +   +L   L +    G++ +G    +            K  L+LG E  G+    
Sbjct: 1039 NILEVNPESLAGFLLEKQMEGYKIVGAEQTAHSTNFVDFKFPKKSILLLGHEKHGIPANL 1098

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                     +   G++++LNV  A ++ ++ 
Sbjct: 1099 IGFLDYAVEIPQYGLVRSLNVHVAGSLFIWE 1129


>gi|240172151|ref|ZP_04750810.1| spou rRNA methylase family protein [Mycobacterium kansasii ATCC
           12478]
          Length = 218

 Score = 89.3 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 63  DTRRHSLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQ 117

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 +  + L      G   + +        LE+     +  L+ G EG G+    + 
Sbjct: 118 RLRHHDSTAELLDFASGAGLTVVAVDNVPGAVRLEETTLPRECLLLFGQEGPGITADARA 177

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A+    +   G  +++N   AA +A++   + H
Sbjct: 178 GASVTLSIAQFGSTRSINAGVAAGIAMHAWIRQH 211


>gi|328769754|gb|EGF79797.1| hypothetical protein BATDEDRAFT_11794 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 158

 Score = 89.3 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
            + L++V   ++   N+G + R+   F+ + ++        E  V + ++  A + +P  
Sbjct: 1   RNPLVVVASLISKVPNLGGLCRTCEIFNAELLVVNNIK-IKEDQVFSNTSVSADKWMPIK 59

Query: 190 -IRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +R  +L   L  M + G+  +G+   ++   L       K  ++LG E +G+       
Sbjct: 60  QVREEDLETYLIGMKTRGYTVVGVEQATRSVSLNGFEFPRKTVVLLGKEREGIPTHLMAH 119

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +  +   G+I++LNV  + A+ ++     
Sbjct: 120 LDHVLEIPQFGVIRSLNVHVSGALIVWEYTKQ 151


>gi|294995137|ref|ZP_06800828.1| putative RNA methyltransferase [Mycobacterium tuberculosis 210]
          Length = 192

 Score = 89.3 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 28  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAVVTDRYQ 82

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 83  RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 142

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 143 GAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 176


>gi|260892338|ref|YP_003238435.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
           KC4]
 gi|260864479|gb|ACX51585.1| RNA methyltransferase, TrmH family, group 2 [Ammonifex degensii
           KC4]
          Length = 152

 Score = 89.3 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++   L ++       +      + 
Sbjct: 3   IVLVEPEIPANTGNIARTCAATGATLHLVRPLGFYTDDRHLRRAGLDYWHLVKIYYHDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
            D  +      F     ++ +++   Q        L+ G E  GL  +  +        +
Sbjct: 63  ADLCRAYPDACFFL--TTTRAERWYTQVRYPPGSFLVFGKESTGLPEEILQAFPDRWIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN++NA A+ LY     
Sbjct: 121 PMVPGARSLNLANAVAIVLYEALRQ 145


>gi|260185247|ref|ZP_05762721.1| putative RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289445918|ref|ZP_06435662.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289418876|gb|EFD16077.1| RNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
          Length = 183

 Score = 89.3 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +D  R+  L + +++     NIG+++R+A AF+   +    R          
Sbjct: 19  TREAIIADIDTHRH-PLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNR 72

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +       + T  L+     G   + +        LEQ     +  L+ G E
Sbjct: 73  RGAMVTDRYQRLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQE 132

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+    +  A     +   G  +++N   AA +A++   + H
Sbjct: 133 GPGITDDARAGAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 176


>gi|184199838|ref|YP_001854045.1| RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183580068|dbj|BAG28539.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 239

 Score = 89.3 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 59/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG+++R+A AF    +    R          + A     +   
Sbjct: 75  RRHAFHVAVENWEHDFNIGSVVRTANAFLAREVHIIGRR-----RWNRRGAMVTDRYQHV 129

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +++ + ++         + +      + +E     ++  L+ G EG G+  +    A
Sbjct: 130 RHHASVAEFVEWARGEELAVLAIDNVPGSQLIETFDLPERCVLVFGQEGPGVSGELVAQA 189

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            ++  +   G  +++N   AAAV ++   + H
Sbjct: 190 DAVLAIEQFGSTRSINAGAAAAVTMHAWIRRH 221


>gi|315605817|ref|ZP_07880849.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312515|gb|EFU60600.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 242

 Score = 89.3 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 59/154 (38%), Gaps = 6/154 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R     + +++++   NIG+I+R+A A         + +         + A     ++
Sbjct: 89  AARCLPFEVAVENLDHDFNIGSIVRTANALGA-----RRVHVVGRRRWNRRGAMVTDRYL 143

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P     +  +        G   +G+        LE+ I   K  L+ G+E  GL  +   
Sbjct: 144 PVDHPRDAAELALHCARHGLAIVGVDNVRDSIALEETILPAKACLVFGSEALGLSEEMLA 203

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +  +   G  +++NV +AAA+ ++      
Sbjct: 204 ACDVVVAVTQRGSTRSMNVGHAAAIVMWAHATRL 237


>gi|283782445|ref|YP_003373200.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283440898|gb|ADB19340.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 177

 Score = 89.3 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 6/169 (3%)

Query: 113 GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
           G A        P     R  +LL+V+  +    N+  I R+A          TK  +  +
Sbjct: 11  GDAAFEHVRHRPPTQLERPRELLLVVAPLRSQVNLSNIARTASCCG-----LTKIVACGQ 65

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIAL 231
             +    A    + +       L   L+++   G+    L  +     + +     K+AL
Sbjct: 66  GKLDKTVARDGADELEIEVHRTLLPVLKELRKEGWFLAALEQTTDSVNMHEYQFPRKVAL 125

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           ++G E  GL  +          + + G+  + NV+NA A+ALY     +
Sbjct: 126 VIGNERHGLSDEELSLMNVCLEIPVWGLPHSYNVANATAMALYEYCRQY 174


>gi|294013040|ref|YP_003546500.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S]
 gi|292676370|dbj|BAI97888.1| RNA methyltransferase CspR [Sphingobium japonicum UT26S]
          Length = 156

 Score = 89.3 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAILR A  FS    I          A L ++A          R +N      +  +
Sbjct: 16  GNVGAILRLAACFSVPVDIIMPTGFAFSDAKLKRAAMDYGASADVTRHANFEAFDVRRRA 75

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + + +SS + + L          L++G+E  G+    ++ A     + M    ++LN
Sbjct: 76  EGRRLMLMSSHASQRLPDVEFRADDILLMGSESAGVPNAVRDLADVRVRIPMAPGFRSLN 135

Query: 265 VSNAAAVALYITQNH 279
           ++ +  +A+      
Sbjct: 136 IAVSTGIAVAEALRQ 150


>gi|19553964|ref|NP_601966.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|21325544|dbj|BAC00166.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
          Length = 206

 Score = 89.3 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +D  R+S L + +++  +  NIG ++R+A AF+ + +    R          
Sbjct: 42  TREAIVEDIDTRRHS-LHVAIENFENDANIGTVVRTANAFAVNTVHIVGRR-----RWNR 95

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +   +   ++   L    +     + +  +    PLE         L+ G E
Sbjct: 96  RGAMVTDRYQHLMHHEDVDSLLAWAIAERLTIVAIDNTPGSVPLETAELPKNCLLLFGQE 155

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+    +  A     +   G  +++N   AA +A++   + H
Sbjct: 156 GPGVTEAARAGALMTCSIAQFGSTRSINAGVAAGIAMHAWIRQH 199


>gi|291545357|emb|CBL18465.1| Predicted rRNA methylase (SpoU class) [Ruminococcus sp. SR1/5]
          Length = 166

 Score = 89.3 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            + ++     EH+   R  + 
Sbjct: 6   IVLHEPEIPANTGNIGRTCVATGTRLHLIEPLGFRLNEKAIKRAGMDYWEHLDVTRYLDY 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D L+   + G +    ++ + +        D   ++ G E  G+         ET    
Sbjct: 66  EDFLK--KNPGAKIYYATTKAPQTYTDVQYEDDCFIMFGKESAGIPEDILVNNQETC--- 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G I++LN+SN+ A+ LY     
Sbjct: 121 VRIPMIGDIRSLNLSNSVAIVLYEALRQ 148


>gi|226951582|ref|ZP_03822046.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|294651241|ref|ZP_06728569.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837685|gb|EEH70068.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|292822894|gb|EFF81769.1| RNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
          Length = 156

 Score = 88.9 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNI 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
              L  + + G      L++           N  +AL++G E +GL  + +         
Sbjct: 64  ELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEQVRLMFPQDQWI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 124 RLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|225376769|ref|ZP_03753990.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
           16841]
 gi|225211395|gb|EEG93749.1| hypothetical protein ROSEINA2194_02411 [Roseburia inulinivorans DSM
           16841]
          Length = 167

 Score = 88.9 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 57/152 (37%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L +VL     P N G I R+ VA      +        +   L ++     + +    
Sbjct: 2   AELNIVLYEPEIPANTGNIGRTCVATGTKLHLIEPLGFRLDEKALKRAGMDYWKDLDVTT 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             N  D  +   +   +    ++  +             ++ G E  G+  +  +    +
Sbjct: 62  YVNWDDFCE--KNPNEKIYMATTKGRHVYSDVSYEPDCFIMFGKESAGIPEEILKANPDT 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
              + M G  ++LN+SN+ A+ LY    QNHF
Sbjct: 120 CVRIPMIGETRSLNLSNSVAIVLYEALRQNHF 151


>gi|241895530|ref|ZP_04782826.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|55274184|gb|AAV48972.1| hypothetical RNA methyltransferase [Weissella paramesenteroides]
 gi|241871232|gb|EER74983.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 202

 Score = 88.9 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 14/162 (8%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAK-----SASG 182
           R   ++ VL ++    N    +R+  AFS   I+     +P  S++   AK      A G
Sbjct: 34  RRGDMITVLQNLTHDFNKATAVRNHNAFSGREIVFLNPDNPMDSDNPEGAKKWNKTGAVG 93

Query: 183 AL--EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK---KPLEQEIKNDKIALILGAEG 237
           A   EHI + RI +      + H  G+    + +        + Q     K   + G E 
Sbjct: 94  AQHYEHISHHRILDYQKLFDRWHEEGYTIYAVDNTPGYELHNVFQVKFPKKSVFLFGEEQ 153

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQ 277
            GL  +  + A  M ++   G +++LNVS A  +   LY  Q
Sbjct: 154 IGLADELIQAADQMIYIPQTGSVRSLNVSVAHGIIAALYTAQ 195


>gi|302390100|ref|YP_003825921.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter
           oceani DSM 16646]
 gi|302200728|gb|ADL08298.1| RNA methyltransferase, TrmH family, group 2 [Thermosediminibacter
           oceani DSM 16646]
          Length = 160

 Score = 88.9 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 11/151 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +        E   L ++       +     SN 
Sbjct: 4   IVLVEPEIPQNTGNIARTCAATGAVLHLVGPLGFSLEDRYLKRAGLDYWHLVDVRYYSNY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
           ++   +  + G     L++ ++K     I      L+ G E  GL  +      E     
Sbjct: 64  SEF--EEKNRGMPMFFLTTKAEKCYTDVIYEPGSYLVFGKETAGLPLELLKANWERC--- 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
             + M    ++LN+SNAAA+ LY    QN+F
Sbjct: 119 VRIPMVDDARSLNLSNAAAIVLYEALRQNNF 149


>gi|114568580|ref|YP_755260.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114339042|gb|ABI64322.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 178

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 12/157 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A++     +  + ++ P N+GAILR+A AF      T    S     V     + + +H+
Sbjct: 3   AMKRGYFGVGAEGISKPMNMGAILRTAHAFGASFAFTLNA-SHQVRDVYRADTAKSADHV 61

Query: 188 PYIRISNLTD-ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRPKT 244
           PY    +L+  AL        Q +G+   ++  ++       +  A + G E   L  + 
Sbjct: 62  PYYEWPDLSAMALP----SNCQLVGIEL-AEDAVDLPSFRHPLCAAYVFGRERGSLSQEV 116

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           Q+  + +  +     +   NVS A A+ LY  Q +F 
Sbjct: 117 QDRCSHIVKIPTKFCV---NVSVACAITLYDRQINFG 150


>gi|313471804|sp|B2IBT9|TRML_BEII9 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 160

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 50/138 (36%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR       +  I      P       ++    L+ +   R  + T       
Sbjct: 10  PQNCGTMLRLCACLGVEAAIIEPAGFPVSDRHFRRAGMDYLDQVALSRHVSFTAFRAWQI 69

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + + LS+ + +P           L++G E  G+      +A +   + +   +++L
Sbjct: 70  ETGRRLVLLSTKASQPYTDFTFRPDDILLMGRESAGVPEAVHASADARVVIPLRPPMRSL 129

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ AAA+ L        
Sbjct: 130 NVAVAAAMVLGEALRQVG 147


>gi|118591955|ref|ZP_01549350.1| RNA methyltransferase [Stappia aggregata IAM 12614]
 gi|118435598|gb|EAV42244.1| RNA methyltransferase [Stappia aggregata IAM 12614]
          Length = 157

 Score = 88.6 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 47/136 (34%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR A        +      P   + L ++    LE    +R  +         
Sbjct: 12  PQNTGTILRLAACMGVTVHLIEPAGFPISDSALKRAGMDYLERAAMVRHISFAAFDDWRR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           S   + + L++ S  P           L++G E  G+       A +   + M   +++L
Sbjct: 72  SERRRLVLLTTKSDLPYADFTFETDDILMMGRESSGVPEDVHALADARLTIPMADGMRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           NV+ +  + L      
Sbjct: 132 NVAVSTGMVLGEALRQ 147


>gi|313836588|gb|EFS74302.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA2]
 gi|314928098|gb|EFS91929.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL044PA1]
 gi|314972098|gb|EFT16195.1| RNA methyltransferase, TrmH family [Propionibacterium acnes
           HL037PA3]
          Length = 99

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRP 242
           +P I    L DA++  H      +         L+   ++      IA ++G E  GL  
Sbjct: 1   MPVIVGVELADAVEWAHQREMSVLAADG-GGHSLDAVARSGRLKRPIAWLMGNEAWGLPE 59

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +  A  +  + M G +++LN+S AAAV LY T +
Sbjct: 60  ADRALADEVVGVPMWGAVESLNLSTAAAVVLYATAS 95


>gi|70936152|ref|XP_739062.1| RNA methyltransferase [Plasmodium chabaudi chabaudi]
 gi|56515769|emb|CAH86833.1| RNA methyltransferase, putative [Plasmodium chabaudi chabaudi]
          Length = 224

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 4/166 (2%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                          +  + L+ LD +   +N+G IL  A + + D I          + 
Sbjct: 59  VAIVKMPNIENTKTEKKIKFLLALDRIRYAYNLGKILNIAYSMNIDFIFYIHNTVDPYNH 118

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALI 232
            +    SG    IPY  + +  +  Q         I   ++   P  + + I N  + LI
Sbjct: 119 QVMDITSGKHLFIPY-SVGSYNELNQFCEQNNLVPIVAHTNGMTPQSILKNITNQGVCLI 177

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           LG E  G        A     L M  +  +LNVS AA + ++  +N
Sbjct: 178 LGNESTGPHKDIFSFA-KPVCLPMHEMTNSLNVSVAAGILIHYLKN 222


>gi|78212857|ref|YP_381636.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9605]
 gi|78197316|gb|ABB35081.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
           sp. CC9605]
          Length = 163

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 9/157 (5%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L + L     P N G I R++ AF     +        +   + ++      H+    
Sbjct: 5   SPLRIALFEPQIPPNTGNIARTSAAFRIPLTLIEPLGFKVDDRSVRRAGLDYWPHVQLSI 64

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            SN  +    +   G + IG S      L          L+ G E  GL    ++   S+
Sbjct: 65  ASNFPEFQAGLR-PGQRLIGCSRRGGSSLTSFTFQRGDVLLFGREDTGLPESVRDACDSI 123

Query: 252 AHLHMPGIIK--------ALNVSNAAAVALYITQNHF 280
             + MPG           +LN+S A A+  Y+     
Sbjct: 124 LTIPMPGAADDAGQGGVRSLNLSVACALVTYVAGQQL 160


>gi|296131382|ref|YP_003638632.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296023197|gb|ADG76433.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 168

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 12/134 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSP---SESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           N+G +LR+  A      +    + P   +    L + A             +    L++ 
Sbjct: 36  NLGTLLRTCDAAGACLAVPRLPWVPEALARGNTLRRPAC-------VHWTGSPVRWLERQ 88

Query: 203 HSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
              G   +G  L+ +S +  +  +   +  ++LG E  G+ P+  +    +  + M G  
Sbjct: 89  RERGSAVVGVELAEESVRLGDLPVARGRTVMVLGHEQTGVPPEALDLLDVVVEIPMVGTG 148

Query: 261 KALNVSNAAAVALY 274
            +LNV+ A ++ LY
Sbjct: 149 ASLNVAVAGSLVLY 162


>gi|148239457|ref|YP_001224844.1| rRNA methylase [Synechococcus sp. WH 7803]
 gi|147847996|emb|CAK23547.1| Predicted rRNA methylase [Synechococcus sp. WH 7803]
          Length = 165

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 9/156 (5%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++ S L + L     P N G I R+  AF     +        +   L ++      H+ 
Sbjct: 4   LKPSPLRVALFEPRIPPNTGNIARTCAAFDLPLSLIEPLGFSIDDRQLKRAGLDYWPHVN 63

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +N       + +  F+ IG S      L+         L+ G E  GL    ++  
Sbjct: 64  LSVHTNFQAFKNSL-AKPFRVIGCSRRDGVALQGFCFEPGDVLLFGREDTGLPQPVRDQC 122

Query: 249 TSMAHLHMP--------GIIKALNVSNAAAVALYIT 276
             +  + MP        G +++LN+S A A+A +  
Sbjct: 123 DQILTIPMPCSADSDGQGGVRSLNLSVACAIACFQA 158


>gi|289756447|ref|ZP_06515825.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|289712011|gb|EFD76023.1| RNA methyltransferase [Mycobacterium tuberculosis T85]
 gi|326902206|gb|EGE49139.1| RNA methyltransferase [Mycobacterium tuberculosis W-148]
          Length = 183

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 28  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAVVTDRYQ 82

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 83  RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 142

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            A     +   G  +++N   AA +A++   + H
Sbjct: 143 GAAVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 176


>gi|218134808|ref|ZP_03463612.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990193|gb|EEC56204.1| hypothetical protein BACPEC_02711 [Bacteroides pectinophilus ATCC
           43243]
          Length = 165

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           ++ ++     + +      N 
Sbjct: 4   IVLHEPEMPANTGNIGRTCVAAGARLHLIEPLGFHINEKMVKRAGLDYWDKLDVTVYDNY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+   + G +    ++ +          D   ++ G E  G+      +   +   +
Sbjct: 64  EDFLE--KNPGAKIYMATTKAPHTYCDVRYEDDCYIMFGKESAGIPEDILVQHPDTAIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+SN+ A+ LY     
Sbjct: 122 PMIGDIRSLNLSNSVAIVLYEALRQ 146


>gi|72391682|ref|XP_846135.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359056|gb|AAX79504.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70802671|gb|AAZ12576.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 391

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 44/215 (20%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------------------ 126
                   V  V  + + ++ G+    Q + LE +      +                  
Sbjct: 108 LARALSVAVHPVERRELVRLCGERRN-QNVVLEVSTFTPRDVVASPWESGRRVWDADGRG 166

Query: 127 --DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
             +    +  ++ LDHV DP N+GAI+RSA       I+ +   S   +A + +S++G +
Sbjct: 167 MTEGGAQTDDVVFLDHVIDPANVGAIMRSAFFMGLRRIVLSSD-SAGCTAAVCRSSAGFM 225

Query: 185 EHIPYIRI-----SNLTDALQKMHS-----------------WGFQTIGLSSDSKKPLEQ 222
           E++   R      + L + + +  +                  G  T             
Sbjct: 226 EYMSVYRAVVPTLTFLENTVAQQKARDGGHLLEIYATSPMPRRGVTTCSARELPSVSCGP 285

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
             K  +  L+LG EG GL  +     T  AH+ + 
Sbjct: 286 VNKPRRRLLLLGNEGAGLPSEVMGLCTHTAHIPLA 320


>gi|324501288|gb|ADY40576.1| Methyltransferase TARBP1 [Ascaris suum]
          Length = 1251

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 4/148 (2%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              + L++V   V  P N+G + R++  F  + ++        E       +  +   I  
Sbjct: 1096 EGTSLIVVATLVKKPANLGGLCRTSEIFGAEKLVLANSRIV-EDRTFKSLSLSSENWIEI 1154

Query: 190  IRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             +++   L D L KM   G++ I    + + K         K  L+LG E +G+  +   
Sbjct: 1155 EQVTACELLDYLDKMRKMGYKIIAAEQTTNSKSFAMFRFPRKCVLLLGDEKEGIPVEYIR 1214

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALY 274
                   +   G  ++LNV    A+ ++
Sbjct: 1215 YVDHSVEIAQVGQTRSLNVHVTGALFIH 1242


>gi|162454190|ref|YP_001616557.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce
           56']
 gi|161164772|emb|CAN96077.1| SpoU rRNA methylase family protein [Sorangium cellulosum 'So ce
           56']
          Length = 175

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   L  +RN    + +    +P NIGAI+R A +F    I               
Sbjct: 9   TTREIREELAPLRN-DFSVAVCRAKNPFNIGAIIRVAHSFLVREIFLIGT-----EPYYE 62

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAE 236
           +++ G  ++   +   +    L+   + G   IG+  D +++ L +      +  + G+E
Sbjct: 63  RASMGMQKYETIVECPDEASFLEA--ARGRPLIGVERDHARRTLWEAPFPRGLVFLFGSE 120

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
             GL     +    +  + M GI  +  V+ AA + L  +  + 
Sbjct: 121 DDGLPQALLDACEDVIAIPMYGINHSYPVAIAAGMTLCEWARRR 164


>gi|303276384|ref|XP_003057486.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461838|gb|EEH59131.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 411

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 70/219 (31%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK----------------------- 166
           R S++L+V++   D HN  A++R+A A     +                           
Sbjct: 31  RTSRVLVVIERCTDEHNYSAVIRTAEALGVQHVWLIDPVDVDLDAVGSDDDDGGGGDDGE 90

Query: 167 ------------------------------RYSPSESAVLAKSASGALEHIPYIRISNLT 196
                                         R+  +        A  A E       +   
Sbjct: 91  RDDDDEEEEEEEERAQKKKPGRRTRPWSRTRHGDAARDAHKLFARRANEFTTIREFATTA 150

Query: 197 DALQKMHSWGFQTIGLSS-----------------DSKKPLEQEIKNDKIALILGAEGKG 239
             +  +   G                         D        +  +K+A++ G E  G
Sbjct: 151 ACVAALREDGRTIWATDLSQRAVCLTESALRAARGDDATSASASVVPEKLAIVFGTESVG 210

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +    A    +L + G   +LN+S AAA+ ++    
Sbjct: 211 CTEEILAAADLRVYLPLRGFADSLNLSVAAALVMHELFR 249


>gi|30250229|ref|NP_842299.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718]
 gi|30181024|emb|CAD86214.1| rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
           [Nitrosomonas europaea ATCC 19718]
          Length = 154

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++L     P N G I+R          +            L ++     E        
Sbjct: 2   LQIILHQPEIPPNTGNIIRLCANTGAQLHLIRPLGFDLSDRQLRRAGLDYHEWARLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           +L   L+ M   G +   +++ +     +         + G+E +GL  +  E       
Sbjct: 62  DLASCLKLMD--GCRIFAVTTRATHHHGKVAYTGNDVFLFGSETRGLPAEVLENFPQDQR 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    ++LN+SNAAAV +Y       
Sbjct: 120 IRIPMLSASRSLNLSNAAAVIIYEAWRQIG 149


>gi|115522972|ref|YP_779883.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisA53]
 gi|115516919|gb|ABJ04903.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           BisA53]
          Length = 153

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 49/136 (36%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR       +  I      P       ++    L+ +   R  + T   Q   
Sbjct: 11  PQNTGTILRLCACLDVEAHIIEPAGFPVSDRNFRRAGMDYLDQVSLTRHDSWTKFEQWRR 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + I L++       +        L+LG E  G+  +    A +   + +   +++L
Sbjct: 71  DQGCRLILLTTKGLISYFEYRYAPSDVLMLGRESAGVPDEVAAVADARLAIPVKPGLRSL 130

Query: 264 NVSNAAAVALYITQNH 279
           N++ AAA+ +      
Sbjct: 131 NIAVAAAMVVGEALRQ 146


>gi|297562843|ref|YP_003681817.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847291|gb|ADH69311.1| tRNA/rRNA methyltransferase (SpoU) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 250

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 7/148 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +   LD VR+    + +++     NIG+++R+A AF C  +    R          
Sbjct: 71  RREAIVADLDTVRH-PFHVAVENWTHDFNIGSVVRTANAFGCAAVHIVGRR-----RWNK 124

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +       +    +      G   +G+       PLE         L+ G E
Sbjct: 125 RGAMVTDRYQHVHHHPDTEALVAWAEERGLALLGVDNLPGSVPLETYPLPRNAVLVFGQE 184

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G GL  + +    ++  +   G  +++N
Sbjct: 185 GPGLSEEVRRVCRAVLSISQFGSTRSIN 212


>gi|94495460|ref|ZP_01302040.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58]
 gi|94424848|gb|EAT09869.1| tRNA/rRNA methyltransferase [Sphingomonas sp. SKA58]
          Length = 156

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 51/135 (37%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAILR A   +    I          A L ++A          R +N         +
Sbjct: 16  GNVGAILRLAACLAVPVDIIMPTGFAFSDARLKRAAMDYGAAADVTRHANFETFDAVRRA 75

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + + +S+ + + L          L++G+E  G+    ++ A     + M    ++LN
Sbjct: 76  GGRRLLLMSAHASQRLPDVRFKSDDVLLMGSESAGVPDDVRDLADIRVRIPMAPGFRSLN 135

Query: 265 VSNAAAVALYITQNH 279
           ++ +  +A+      
Sbjct: 136 IAVSTGIAVAEALRQ 150


>gi|221056833|ref|XP_002259554.1| rna methyltransferase [Plasmodium knowlesi strain H]
 gi|193809626|emb|CAQ40327.1| rna methyltransferase, putative [Plasmodium knowlesi strain H]
          Length = 333

 Score = 88.2 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 102/277 (36%), Gaps = 29/277 (10%)

Query: 17  DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA-----LNNPSRKIFQL 71
           D+ Y  + +  +  K +    +K     +  + F      V  +     L +     F++
Sbjct: 69  DNEYLSISKRSKMMKYIIRLRKKRNFRKKMNSFF------VKESSTITHLASNHNLTFEV 122

Query: 72  LATKNALARLDWDANLPHPFPVKTVPPQTIDKI------VGKEAVHQGLALETAPLLSPT 125
           + +K   ++   D        +      T++ I      V KEA +  +A+   P     
Sbjct: 123 ILSK---SKSLLDHFKEKCSKLYYTDIDTLNYIFRDTLKVNKEARNDAVAVVKLPKSVQP 179

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            + ++    L+  D +   +N+G IL +A +   D +          +  + +  +G+  
Sbjct: 180 KEPIK---FLLAFDRIRYAYNLGKILNTAASMGVDYLFYVHNTVDPFNHKVIEVTNGSHF 236

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLR 241
            IPY+   +  +  Q   S     +   ++   P+    E   +   + LILG E  G  
Sbjct: 237 QIPYL-FGSYVELRQFCDSHKLLPVVAHTNGVNPVHILKETSEQGKGVCLILGNESTGPH 295

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 A     L M  +  +LNV  AA++ ++  ++
Sbjct: 296 ADVLNFA-KPISLPMHEMTNSLNVYVAASILIHYLKS 331


>gi|290988988|ref|XP_002677151.1| predicted protein [Naegleria gruberi]
 gi|284090757|gb|EFC44407.1| predicted protein [Naegleria gruberi]
          Length = 300

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 74/204 (36%), Gaps = 18/204 (8%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL-LSPTLDAVRNSQLLMVLDHVNDPHNI 147
           +           I+ I G    + G              +  +   + +    V+DP+N+
Sbjct: 96  NDIQYYQTNDNLINHICGDIVSNDGYCAVYDNYNPFKLFENKKKRNVYIYCYKVSDPNNL 155

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--NLTDAL-QKMHS 204
           G+I+R +  F    I  ++      +    +S+   + +IP   +   +    +  ++  
Sbjct: 156 GSIIRMSFGFDIKAIFLSEDCVSPFTERSIRSSRNYILNIPVFHLPLKDYKTIIYDQLKC 215

Query: 205 WGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKG----------LRPKTQETATSMA 252
                   S+D K P++    +    + LI+G E  G          L     E      
Sbjct: 216 KKSLIADASTDRKTPIQNLNDSNEGDVCLIIGNEHHGFCDDDFKSILLPQ--LENQYEGI 273

Query: 253 HLHMPGIIKALNVSNAAAVALYIT 276
           ++ M   + +++VS+AA++ ++  
Sbjct: 274 YIPMKNNLDSISVSHAASILMFEL 297


>gi|303279152|ref|XP_003058869.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460029|gb|EEH57324.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 119

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 170 PSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
           PS      ++A G +  IP  R     L D         +     ++++    E+     
Sbjct: 10  PSARGQALRAARGGVFRIPIARLGWDELVDFTDARGLARYCADATAANAVDAKEESEDGR 69

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + L+LGAEG+GL  +          + MPG +++LNV  A  + +Y+ + 
Sbjct: 70  GVCLVLGAEGRGLSAEALGGC-QPVKVPMPGEMESLNVGIAGGILMYVMRK 119


>gi|332292383|ref|YP_004430992.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170469|gb|AEE19724.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 153

 Score = 87.8 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 140 HVND---PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            + +   P N+G + RSA       I T       +S+        A++ +PY       
Sbjct: 14  GIQNGKTPENLGVLWRSAQNLGASFIFTIGNRYAKQSSDTHN----AVKAMPYYHYDTFD 69

Query: 197 DALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           D  + +   G + +G+  D   + LE      +   +LGAE  GL  +  E +  +    
Sbjct: 70  DFFKHLPK-GVRIVGVELDDRAETLETFHHPRRCVYLLGAEDHGLTNEAIEKSHFLIKFP 128

Query: 256 MPGIIKALNVSNAAAVALYITQN 278
                 +LNVS A ++ LY    
Sbjct: 129 ---STLSLNVSVAGSIVLYDRTR 148


>gi|257482401|ref|ZP_05636442.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 112

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAGENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
           E VHQG+  + +P       +L   LD    S LL+VLD V DPHN+G
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLG 112


>gi|33322427|gb|AAQ06939.1|AF496269_1 trmh family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 83

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 202 MHSWGFQTIGLSS-DSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +   GF+T  ++  D+   ++  +    D++A+ILG+EG GL P+T   +     + M  
Sbjct: 1   LQELGFKTAAMALRDNTVDIDDPVLKEADRLAVILGSEGPGLLPQTIAESDYTIKIPMAE 60

Query: 259 IIKALNVSNAAAVALYITQN 278
            + +LNV+ A+++A +  + 
Sbjct: 61  RVDSLNVAAASSLAFWEVKK 80


>gi|87124502|ref|ZP_01080351.1| putative tRNA/rRNA methyltransferase (SpoU family protein)
           [Synechococcus sp. RS9917]
 gi|86168074|gb|EAQ69332.1| putative tRNA/rRNA methyltransferase (SpoU family protein)
           [Synechococcus sp. RS9917]
          Length = 161

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 3/146 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  + L + L     P N G I R++ AF     +        E   L ++      H+ 
Sbjct: 6   LTAAPLRIALYEPQIPPNTGNIARTSAAFQLPLALIEPLGFSLEDRYLKRAGLDYWPHVQ 65

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               S++   L+ + +  F+ IG S      L Q        L+ G E  GL    +   
Sbjct: 66  LSSHSDVDAFLEALPTP-FRLIGCSRHGGTALPQMRFEPGDVLLFGREDLGLPESVRRRC 124

Query: 249 TSMAHLHMPGI--IKALNVSNAAAVA 272
             +  + MPG   +++LN+S AAA+ 
Sbjct: 125 DQLCTIPMPGGAAVRSLNLSVAAALV 150


>gi|163850108|ref|YP_001638151.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|254559252|ref|YP_003066347.1| rRNA methylase [Methylobacterium extorquens DM4]
 gi|163661713|gb|ABY29080.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium extorquens
           PA1]
 gi|254266530|emb|CAX22294.1| putative rRNA methylase [Methylobacterium extorquens DM4]
          Length = 149

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR +        I            L +S    L+H+   R  +         
Sbjct: 12  PQNTGTMLRMSACLGIAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWDAFEAWRR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + +  ++    P  Q    D   L++G E  G+       A +   + +   +++L
Sbjct: 72  ETGIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHAAADARVVVPIRPGLRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+  AA+ L        
Sbjct: 132 NVAVCAAMMLGEAIRQVG 149


>gi|261329707|emb|CBH12689.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 391

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 44/215 (20%)

Query: 85  ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTL------------------ 126
                   V  V  + + ++ G+    Q + LE +      +                  
Sbjct: 108 LARALSVAVHPVERRELVRLCGERRN-QNVVLEVSTFTPRDVVASPWESGRRVWDADGRG 166

Query: 127 --DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
             +    +  ++ LDHV DP N+GAI+RSA       I+ +   S   +A + +S++G +
Sbjct: 167 MTEGGVQTDDVVFLDHVIDPANVGAIMRSAFFMGLRRIVLSSD-SAGCTAAVCRSSAGFM 225

Query: 185 EHIPYIRI-----SNLTDALQKMHS-----------------WGFQTIGLSSDSKKPLEQ 222
           E++   R      + L + + +  +                  G  T             
Sbjct: 226 EYMSVYRAVVPTLTFLENTVAQQKARDDGHLLEIYATSPMPRRGVTTCSARELPSVSCGP 285

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
             K  +  L+LG EG GL  +     T  AH+ + 
Sbjct: 286 VNKPRRRLLLLGNEGAGLPSEVMGLCTHTAHIPLA 320


>gi|300864366|ref|ZP_07109239.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
 gi|300337641|emb|CBN54385.1| tRNA/rRNA methyltransferase (SpoU) [Oscillatoria sp. PCC 6506]
          Length = 152

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 2/147 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +            L ++      ++      NL
Sbjct: 4   VVLISPQIPPNTGNIARTCAATRTELHLVGPLGFEISDRYLKRAGLDYWPYVNLHSHDNL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + IG S+  +    +    +   L+ GAE  GL P+  E  T    + 
Sbjct: 64  EAFKACHQQRGGRWIGFSTKGQCSYTRFEFQNNDWLLFGAETTGLPPEILEACT-NVRIP 122

Query: 256 MP-GIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + AV L+  Q    
Sbjct: 123 MSEPGVRSLNLSVSVAVGLFEAQRQLG 149


>gi|166154755|ref|YP_001654873.1| SpoU family rRNA methylase [Chlamydia trachomatis 434/Bu]
 gi|166155630|ref|YP_001653885.1| SpoU family rRNA methylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336029|ref|ZP_07224273.1| SpoU family rRNA methylase [Chlamydia trachomatis L2tet1]
 gi|165930743|emb|CAP04240.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis 434/Bu]
 gi|165931618|emb|CAP07194.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 151

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P N G I R+ VA   + I+            + ++     E +    + +L
Sbjct: 3   IVLHNPDIPQNTGNIGRTCVALGAELILVRPLGFSLADKFVKRAGMDYWERLSLSVVDSL 62

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
            +AL      G    +   L++       E+E+  D    I GAE KGL     +  ++ 
Sbjct: 63  EEAL-----LGVPKERIFCLTTKGSSYYGERELPLDGT-YIFGAESKGLSQTVLDAYSSQ 116

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++ M    ++LN++ +  + +Y     
Sbjct: 117 CLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|308068197|ref|YP_003869802.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305857476|gb|ADM69264.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
           E681]
          Length = 154

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +       ++ A L ++       +     
Sbjct: 2   PLHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEYH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSM 251
            +  +  +K     F     +  +++  +   ++    L+ G E KGL P+     A + 
Sbjct: 62  ESFAEVQEKYQEGRFF-YATTKANQRYSDIAFQDGDF-LVFGKETKGLPPELLAANADTC 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M   +++LN+SN+AA+ +Y      
Sbjct: 120 IKMPMSDKVRSLNLSNSAAIIVYEALRQM 148


>gi|86131592|ref|ZP_01050190.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85818037|gb|EAQ39205.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 153

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 14/147 (9%)

Query: 140 HVND---PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            + +   P N+G + RSA       I T         A  A     A+  +PY    N  
Sbjct: 14  GIQNGKTPENLGVLWRSAQNLGASFIFTIGNR----YAKQASDTHNAVSAMPYYHYDNFD 69

Query: 197 DALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           D    +   G + +G+  D   +PLE      +   +LGAE  GL  +  + +  +    
Sbjct: 70  DFFNHLPK-GARIVGVELDERAQPLETFEHPRRCVYLLGAEDHGLTREAIDRSHFLVK-- 126

Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282
                 +LNV+ A ++ LY      AK
Sbjct: 127 -FSSTLSLNVAVAGSIVLYD--RGLAK 150


>gi|110740266|dbj|BAF02030.1| hypothetical protein [Arabidopsis thaliana]
          Length = 253

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 70/169 (41%), Gaps = 9/169 (5%)

Query: 116 LETAPLLSPTLDAVRNSQLLM--VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           L +  +    L + R S +L+  ++D +  P N+  + R+   F    +      S    
Sbjct: 86  LRSRSMEVERLKSGRQSLILVASLVDRI--P-NLAGLARTCEVFKASSLAVADA-SIIHD 141

Query: 174 AVLAKSASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIA 230
                 +  A + +P   + +++L   L+K    GF  +GL   +    L++     K  
Sbjct: 142 KQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTV 201

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L+LG E +G+         +   +   G++++LNV  + A+AL+     
Sbjct: 202 LVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQ 250


>gi|158334676|ref|YP_001515848.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304917|gb|ABW26534.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 153

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 1/149 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL +   P N G I R+  A   +  +         +  L ++       +     +
Sbjct: 2   LRVVLVYPEIPPNTGNIARTCAATQTELHLVEPLGFEISNRYLKRAGLDYWPFVKLQTHA 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +     Q     G +++  S        Q    +   LI G+E  GL P   + ++++  
Sbjct: 62  SWAAFEQVRQQQGGRSVSFSKSGTHSYLQFQFCEDDWLIFGSESSGLPPDILQDSSAVLR 121

Query: 254 LHMPG-IIKALNVSNAAAVALYITQNHFA 281
           + M    +++LN+S +AAV L+  +   A
Sbjct: 122 IPMAHEQVRSLNLSVSAAVGLFEARRQLA 150


>gi|332703269|ref|ZP_08423357.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553418|gb|EGJ50462.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 151

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G+I R   A      +        +   L ++     EH+      + 
Sbjct: 3   IVLYQPQIPPNTGSIARLCAATGTPLHLIEPLGFSIDDRHLKRAGLDYWEHVRVKVWPDW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L    +   + +   +    P  +       AL+LG E  GL  +  E+   +  + 
Sbjct: 63  QAYLDS--AQPTRLVATCARFGTPHHEFSFASDDALVLGPEATGLPMRIIESIPQLVRIP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           + G +++LN++NAA+V LY     
Sbjct: 121 IWGQVRSLNLANAASVLLYEAYRQ 144


>gi|326329782|ref|ZP_08196102.1| TsnR [Nocardioidaceae bacterium Broad-1]
 gi|325952368|gb|EGD44388.1| TsnR [Nocardioidaceae bacterium Broad-1]
          Length = 172

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 146 NIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           N+G +LR+  A   C  +  TK Y  +    +  +  G    I ++   +    +     
Sbjct: 38  NLGTLLRTCDAIGACLAVPRTKHYLDALQ--IGDTLRGRRPCIHWV-TPSKEGWIAAQRE 94

Query: 205 WGFQTIGLSS-DSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
            G + + +   D   PL +     +   L+LG E +G+             + M G   +
Sbjct: 95  AGKRIVAVELADGATPLTRLAPAREPTVLLLGHEHQGVPDDVLAEVEECVEIPMVGWGAS 154

Query: 263 LNVSNAAAVALY 274
           LNV+ A ++  Y
Sbjct: 155 LNVAVAGSLVAY 166


>gi|111022496|ref|YP_705468.1| RNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110822026|gb|ABG97310.1| probable RNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 230

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG ++R+A AF+   +    R          + A     +   
Sbjct: 77  RRHPLHVAIENFGHDANIGTVVRTANAFAAAAVHIVGRR-----RWNRRGAMVTDRYQHV 131

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  S++   ++     G   + +  +    PLE         L+ G EG G+  + ++ A
Sbjct: 132 LHHSDVDGLVEFARERGLTIVAVDNTPGSVPLETASLPRDCVLLFGQEGPGVTDQAKKVA 191

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 192 AMTVSIAQFGSTRSINAGVAAGIAMHAWVRQH 223


>gi|221060168|ref|XP_002260729.1| rRNA methylase [Plasmodium knowlesi strain H]
 gi|193810803|emb|CAQ42701.1| rRNA methylase, putative [Plasmodium knowlesi strain H]
          Length = 2247

 Score = 87.0 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 4/149 (2%)

Query: 134  LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IR 191
            L++V   ++   N+  + R+   F    +I        +     K +S A + +    ++
Sbjct: 2097 LIVVASLIDKIPNLAGLCRTCEIFKVQKLILHNANIVKDFQ-FQKISSTANKWMNIGEVK 2155

Query: 192  ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
               +   L       +  +GL  +    PL      +K  LILG E +GL          
Sbjct: 2156 KGEILKYLMDKRKKNYSIVGLEQTKCSVPLNNFTFPEKTVLILGDEKEGLPASVLLFLHH 2215

Query: 251  MAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +   GII++LNV  +AA+ +Y     
Sbjct: 2216 CIEIPGKGIIRSLNVHVSAAITIYEYFRQ 2244


>gi|298528451|ref|ZP_07015855.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512103|gb|EFI36005.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 153

 Score = 87.0 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N GAI R   A      +        +   L ++     EH+      N 
Sbjct: 3   IVLYQPRIPPNTGAIARLCAATRTPLHLVGPLGFSLDDKYLKRAGLDYWEHVELTLWKNW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            +  Q +     + I  S+       +   + +  LILG E  GL  K    A  +  + 
Sbjct: 63  EEYRQNL-DKSHRLIMTSARQGADYTRHSYSFQDHLILGPETWGLPEKITSQADHLIRIP 121

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           + G +++LN+SNAA + LY       
Sbjct: 122 IWGEVRSLNLSNAAGIILYEGYRQLG 147


>gi|149610160|ref|XP_001511112.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
           homolog, partial [Ornithorhynchus anatinus]
          Length = 96

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRN-------------- 131
                 PV+TVP + +D + G E VHQG+ LE  PL   +   +                
Sbjct: 1   AEARGVPVRTVPRKVLDGLCGHE-VHQGVCLEVTPLQPRSWAEIGRGGTEEDDGEGPGGR 59

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
            +L +VLD + DP N+GA+LR+A     D +I
Sbjct: 60  PRLWLVLDRIQDPRNLGAVLRTAHFLGVDEVI 91


>gi|329930462|ref|ZP_08284002.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           HGF5]
 gi|328934840|gb|EGG31330.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           HGF5]
          Length = 187

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 3/151 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  L +VL     P N G I R+  A      +       ++   L ++       +   
Sbjct: 33  NMALHIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIE 92

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
              +  + LQ ++  G      +  +K+ ++ E ++    L+ G E KGL P+     A 
Sbjct: 93  YHDSFEE-LQALYPEGRYFYATTKATKRYMDIEYQDGDF-LVFGKETKGLPPELLAANAE 150

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               + M   +++LN+SN+AA+ +Y      
Sbjct: 151 HCIRMPMTDKVRSLNLSNSAAIMVYEALRQL 181


>gi|309810611|ref|ZP_07704422.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
 gi|308435412|gb|EFP59233.1| RNA methyltransferase, TrmH family [Dermacoccus sp. Ellin185]
          Length = 263

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD  R++   + +++     NIG+++R+A AF+        R          + A   
Sbjct: 73  EELDTARHA-FHVAVENWEHDFNIGSVIRTANAFNAKAFHIVGRR-----RWNRRGAMVT 126

Query: 184 LEHIPYIRISNLTDALQKMHSWG----------FQTIGLS-SDSKKPLEQEIKNDKIALI 232
             +        + D L    + G             I +       PLE     +   L+
Sbjct: 127 DRYQHEFHHPTVDDLLAWAATAGPVDAAGHPTRLPVIAIDNVAGSVPLEAFDLPEHCVLL 186

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
            G EG G+     E A ++  +   G  +++N   AAAV ++   + H
Sbjct: 187 FGQEGPGVSADALERADAVLDIAQFGSTRSINAGAAAAVTMHAWIRRH 234


>gi|160946736|ref|ZP_02093939.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270]
 gi|158447120|gb|EDP24115.1| hypothetical protein PEPMIC_00694 [Parvimonas micra ATCC 33270]
          Length = 234

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 65/221 (29%), Gaps = 18/221 (8%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
              L + + K   +L       +   +              + ++K+  KE         
Sbjct: 22  IELLQSKNYKTISVLVHSKYDDKAGLEKICDEKGINLIYNDKIVNKLQSKENT------F 75

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
              +       ++    ++ L    D  N+G ILR+A+ F    I               
Sbjct: 76  VIGVFEKNFAKIKKDNHIL-LCEPRDKGNLGTILRTALGFGFKNIAIIDGCDV-FDPKTV 133

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           +++ GA+  +         +           +  L+      L+         L+ G E 
Sbjct: 134 RASMGAIFKMNVEIFKTFEEYKNTFEENNIYSFILN-KGSVSLKNVEIKKPFTLMFGNES 192

Query: 238 KGLRPKTQETATSM----AHLHMPGIIKALNVSNAAAVALY 274
            GL     E           +     I + N+  A+++A+Y
Sbjct: 193 HGL-----ENFDLKGTTPVFIEQSEDIDSFNLPIASSIAMY 228


>gi|269126522|ref|YP_003299892.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
           43183]
 gi|268311480|gb|ACY97854.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
           43183]
          Length = 180

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G +LR+  A      +              +  +            +    L K  + 
Sbjct: 48  NLGTLLRTCDAVGACLAVPR----LPWVPEALRRGNTLRHRACVHWTGDPCAWLLKRRAE 103

Query: 206 GFQTIGLS-SDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           GF+ +G+  ++    L            +LG E +G+  +  +   +   + M G   +L
Sbjct: 104 GFRVLGVEVAEGAVRLADLPPARTPTIAVLGHESRGIPDEALDLLDAAVEIPMVGTGHSL 163

Query: 264 NVSNAAAVALY 274
           NV+ A ++ LY
Sbjct: 164 NVAVAGSLVLY 174


>gi|186686113|ref|YP_001869309.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
 gi|186468565|gb|ACC84366.1| tRNA/rRNA methyltransferase (SpoU) [Nostoc punctiforme PCC 73102]
          Length = 153

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 9/151 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++      +L
Sbjct: 4   VVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                     G + +G +            Q        L+ G+E  GL P       + 
Sbjct: 64  EAFKTVHQERGGRWLGYTVGGNFSYVSFRYQADDW----LLFGSETTGLPPTILSDCDAT 119

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
            ++ M    +++LN+S + A+ L+ T+    
Sbjct: 120 LYIPMSQPGVRSLNLSVSVAIGLFETRRQLG 150


>gi|149179294|ref|ZP_01857856.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797]
 gi|148841868|gb|EDL56269.1| spoU rRNA Methylase family protein [Planctomyces maris DSM 8797]
          Length = 158

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 5/156 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +   + +VL   + P N G I R+ VA      +        ++  L ++     +H+
Sbjct: 3   ESKEPLIHVVLYQPDIPQNTGNIGRTCVAVGAKLWLVRPLGFQLDAKHLRRAGMDYWQHL 62

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            +  + +L +   ++    +    L+  + + +           + G+E  GL P+  E 
Sbjct: 63  NWEAVDSLAEVQSQLQDRTWW--KLTKFATRYVWDAELEPGQVFLFGSESNGLPPRILEE 120

Query: 248 A-TSMAHLHMPGIIKALN-VSNAAAVALYITQNHFA 281
              S   L M   +++LN  S A AV +Y     F 
Sbjct: 121 DPDSNLKLPMHQEVRSLNLASTATAV-MYEAVRQFG 155


>gi|218295839|ref|ZP_03496619.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
 gi|218243577|gb|EED10105.1| tRNA/rRNA methyltransferase (SpoU) [Thermus aquaticus Y51MC23]
          Length = 158

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 2/145 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+A A      +            L ++      ++        
Sbjct: 4   LVLFQPEIPQNAGNVARTAAALGFPLHLIRPLGFRLSHPGLKRAGLDYWPYVDLRVHDTW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L  +   G + +  S+  ++ L Q    +   L+ G E +GL P+      S+ ++ 
Sbjct: 64  EAFLAALP-PGARVLAFSARGERNLYQARFQEGDYLLFGPETRGLPPEVLGRFPSL-YIP 121

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           MPG +++LN++ A  VA Y      
Sbjct: 122 MPGPVRSLNLAVAVGVAAYEAYRQL 146


>gi|328791993|ref|XP_001123107.2| PREDICTED: hypothetical protein LOC727398 [Apis mellifera]
          Length = 1348

 Score = 86.6 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
               L++V   ++   N+G + R+   F+   ++        +       +  A   I   
Sbjct: 1194 EESLIVVACLLSRIPNLGGLARTCEIFNVKELVIANLNQVKD-KEFQNLSVSAENWITIT 1252

Query: 191  RIS--NLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             I    L   L      G+  +G+   +    L       K  L+LG E  G+       
Sbjct: 1253 EIKPYELCKYLLDKKDMGWSLVGVEQTANSINLLNMKFEKKTILVLGNEKNGIPANLIPL 1312

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +   +   G+I++LNV  + A+ ++     
Sbjct: 1313 FDTCIEIPQAGVIRSLNVHVSGAICIWQYAKQ 1344


>gi|261408854|ref|YP_003245095.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261285317|gb|ACX67288.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           Y412MC10]
          Length = 154

 Score = 86.6 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++   L ++       +      + 
Sbjct: 5   IVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + LQ ++  G      +  +K+ ++ E ++    L+ G E KGL  +     A     +
Sbjct: 65  EE-LQALYPEGRYFYATTKATKRYMDIEYQDGDF-LVFGKETKGLPRELLAANAEHCIRM 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M   +++LN+SN+AA+ +Y      
Sbjct: 123 PMTDKVRSLNLSNSAAIMVYEALRQL 148


>gi|188579913|ref|YP_001923358.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
 gi|179343411|gb|ACB78823.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium populi BJ001]
          Length = 149

 Score = 86.6 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A        I            L +S    L+H+   R  +         
Sbjct: 12  PQNTGTMLRMAACLGVAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWDAFQAWRQ 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + +  ++    P  Q    D   L++G E  G+       A +   + +   +++L
Sbjct: 72  EARLRLVLATTAGALPYTQHAFRDGDCLLMGRESAGVPEAVHTAADARVVVPIRPGLRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+  AA+ L        
Sbjct: 132 NVAVCAAIILGEAIRQVG 149


>gi|22299336|ref|NP_682583.1| SpoU rRNA methylase family [Thermosynechococcus elongatus BP-1]
 gi|22295519|dbj|BAC09345.1| SpoU rRNA Methylase family [Thermosynechococcus elongatus BP-1]
          Length = 153

 Score = 86.6 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R+  A      +            L ++      ++      + 
Sbjct: 4   VVLVHPQIPPNTGNIARTCAATQTPLHLIEPLGFELSDRYLKRAGLDYWPYVTLYCHPDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+  H  G + I     +++        +   L+ G+E  G+      T      + 
Sbjct: 64  PTFLKTAHRHG-RLIAFEPAAQQIYWDFTFAESDWLVFGSEPAGIPADVLATCDVFLKIP 122

Query: 256 M-PGIIKALNVSNAAAVALYITQNHF 280
           M    +++LN+S + A+AL       
Sbjct: 123 MWQPAVRSLNLSVSVAIALMEVYRQL 148


>gi|154815977|emb|CAO85681.1| putative 23S rRNA methyltransferase [Clostridium sp.]
          Length = 165

 Score = 86.6 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPF--PVKTVPPQTIDKIVG 106
             + G   V  AL +    I  +L  + +L ++             V  +   + + I G
Sbjct: 36  FIVEGFRFVEEALKSDY-CIEYILINEKSLNKVQEFNINIEVIENKVYILNESSFNSISG 94

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
            E   QG+           +  ++   L ++ D V DP N+G I+R+A A +  GI+ T+
Sbjct: 95  TE-NSQGILAIV---NMKEVLKLKEDGLYILADRVQDPGNMGTIIRTAHAANASGILITE 150

Query: 167 RYSPSESAVLAKSAS 181
                 +    +S+ 
Sbjct: 151 GTVDVYNEKTLRSSM 165


>gi|296436073|gb|ADH18247.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/9768]
 gi|296437001|gb|ADH19171.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/11222]
 gi|296437934|gb|ADH20095.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/11074]
 gi|297140434|gb|ADH97192.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis G/9301]
          Length = 151

 Score = 86.6 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P N G I R+ VA   + I+            + ++     E +    + +L
Sbjct: 3   IVLHNPDIPQNTGNIGRTCVALGAELILVRPLGFSLADKFVKRAGMDYWERLSLSVVDSL 62

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
            +AL      G    +   L++       E+E+  D    I GAE KGL     +  A+ 
Sbjct: 63  EEAL-----LGVPKERIFCLTTKGSSYYGERELPLDGT-YIFGAESKGLPQTVLDAYASQ 116

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++ M    ++LN++ +  + +Y     
Sbjct: 117 CLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|27377595|ref|NP_769124.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|27350740|dbj|BAC47749.1| tRNA/rRNA methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 152

 Score = 86.6 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 45/137 (32%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR          I      P       ++    L+ +   R  +     +   
Sbjct: 11  PQNTGTILRLCACLGLAAHIIEPAGFPVSDRHFRRAGMDYLDQVSITRHVSWPQFEEWRA 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + +  ++ +              L+ G E  G+     E A +   + +   +++L
Sbjct: 71  AQGCRLLLFTTKAATDYRDFRYQTSDILLFGRESAGVTDAVVEAADARLVIPIAPGLRSL 130

Query: 264 NVSNAAAVALYITQNHF 280
           NV+  AA+A        
Sbjct: 131 NVAMTAAMAAGEALRQI 147


>gi|291520515|emb|CBK75736.1| Predicted rRNA methylase (SpoU class) [Butyrivibrio fibrisolvens
           16/4]
          Length = 165

 Score = 86.6 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I R+  A      +            + ++     + +   R  + 
Sbjct: 4   IILHEPEIPANTGNIGRTCCATGTRLHLIEPLGFVLTDKTVKRAGMDYWDKLEVFRYDDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D   K  +   +    ++ +K+   +        ++ G E  G+  +      E     
Sbjct: 64  DDF--KAKNPDAKIYMATTKAKRTHTEVNYEPDCYIMFGKESAGIPEEILVDNEENC--- 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN+ A+ LY     
Sbjct: 119 VRIPMGHDIRSLNLSNSVAIILYEALRQ 146


>gi|295132643|ref|YP_003583319.1| tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87]
 gi|294980658|gb|ADF51123.1| tRNA/rRNA methyltransferase [Zunongwangia profunda SM-A87]
          Length = 150

 Score = 86.6 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 140 HVND---PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            + +   P N+G + RSA       I T       ++    K    A+  +PY    N  
Sbjct: 14  GIQNGKTPENLGVLWRSAQNMGASFIFTIGNRYAKQACDTHK----AVGAMPYFHYENFK 69

Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           D    +   G   +G+  D   +PLE      +   +LGAE  GL  +  E +  +    
Sbjct: 70  DFYAHLPK-GAMLVGVELDEGAEPLETFKHPRRCVYLLGAEDHGLSKQAIEKSHFLVK-- 126

Query: 256 MPGIIKALNVSNAAAVALYIT 276
               + +LNVS A ++ +Y  
Sbjct: 127 FKSTL-SLNVSVAGSIIMYDR 146


>gi|260548986|ref|ZP_05823208.1| rRNA methylase [Acinetobacter sp. RUH2624]
 gi|260408154|gb|EEX01625.1| rRNA methylase [Acinetobacter sp. RUH2624]
          Length = 157

 Score = 86.2 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNI 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
              L  + S G      L++           N  +AL++G E +GL    +         
Sbjct: 64  EACLADLKSKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQEQWI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 124 RLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|39934266|ref|NP_946542.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|192289793|ref|YP_001990398.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           TIE-1]
 gi|39648114|emb|CAE26634.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|192283542|gb|ACE99922.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           TIE-1]
          Length = 151

 Score = 86.2 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR     + +  I      P+      +S    L+ +  +R  +     Q   
Sbjct: 11  PQNTGTILRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVRHDSWLKFEQWRK 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + I L++  ++P  ++       L+LG E  G+       A +   + M   +++L
Sbjct: 71  TAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIPMQPGLRSL 130

Query: 264 NVSNAAAV----ALYITQNHFAK 282
           N++ AAAV    AL   Q  FA+
Sbjct: 131 NIAMAAAVVTGEAL--RQTQFAQ 151


>gi|115389798|ref|XP_001212404.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114194800|gb|EAU36500.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 199

 Score = 86.2 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 65/185 (35%), Gaps = 47/185 (25%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLD------WDANLPHPFPVK--T 95
           + P + FLYG   V AAL    R++++L   + A   L           L    PVK   
Sbjct: 4   TTPASQFLYGTSAVEAALRCGRRQLYKLYLYQAADEPLSPAKVVLRKLALSKGIPVKMAF 63

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNS-----QLLMVL------DHVND- 143
                +   V     H G  LET+PL    + ++  +     +  + L      + V + 
Sbjct: 64  AGWDRLFDKVSMGRAHNGCVLETSPLPRLPVKSLLEASPADDRFYVELAPQSREEAVVNG 123

Query: 144 ---------------------------PHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
                                      P N+GAI+RSA     D I+   R S   SA  
Sbjct: 124 TNNQITINHSQLRRRYPVVVLLDGVVDPGNLGAIIRSAYYLGVDAIVFAGRNSAPLSATA 183

Query: 177 AKSAS 181
            KS++
Sbjct: 184 VKSSA 188


>gi|124023171|ref|YP_001017478.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963457|gb|ABM78213.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9303]
          Length = 166

 Score = 86.2 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 9/163 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D    S L + L     P N G I R+  AF     +        +   L ++      H
Sbjct: 3   DPSELSPLRVALYEPRIPPNTGNIARTCAAFRIPLALIEPLGFSLDDRYLRRAGLDYWPH 62

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           +     S+L D  ++      + IG S     PL          L+ G E  GL  K ++
Sbjct: 63  VALSVHSDL-DTFRECLPLNHRLIGCSRFGGIPLRSMRFQTGDVLLFGREDTGLPTKIRQ 121

Query: 247 TATSMAHLHMP--------GIIKALNVSNAAAVALYITQNHFA 281
               +  + MP        G +++LN+S A A+  +       
Sbjct: 122 QCDQITTIPMPGAASEQGQGGVRSLNLSVACAIVSFEAGQQLG 164


>gi|332978452|gb|EGK15166.1| RNA methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 183

 Score = 86.2 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P+N G+ +R          +        E   L ++     E+       N 
Sbjct: 5   IVLVHPRIPNNTGSAIRLCANTGAQLHLVEPLGFDLEDKKLRRAGLDYHEYANMKVHKNW 64

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKN--------DKIALILGAEGKGLRPKTQE 246
             A + + + G  + + L++    P  +   +        + IAL+ G+E  GL    +E
Sbjct: 65  QAAKEALKAAGCERMVALTTKLSHPFYEYDFSSSNEDSQQENIALVFGSETAGLADDIRE 124

Query: 247 T--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              A +   L M    ++LN++N+ ++ LY     
Sbjct: 125 DIGADNWLRLPMLPDSRSLNLANSISICLYEVWRQ 159


>gi|242022188|ref|XP_002431523.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis]
 gi|212516817|gb|EEB18785.1| hypothetical protein Phum_PHUM534190 [Pediculus humanus corporis]
          Length = 1475

 Score = 86.2 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 4/147 (2%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
               L++V   ++   N+G + R+   F     +        E    A  +  A + I   
Sbjct: 1326 TDGLIVVASLIDRVPNLGGLARTCEIFGTFEYVLGSLKYV-EDKQFASLSVTAEKWINIK 1384

Query: 190  -IRISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +R  NL + L KM   G++ IG       KPL +     K  L+LG E +G+ P     
Sbjct: 1385 EVRPENLLNYLLKMKDDGYKVIGAEQALYSKPLNEVKFPKKSLLLLGNEKEGIPPNLLPL 1444

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +   GII++LNV     V L+
Sbjct: 1445 LDICVEIPQVGIIRSLNVHVTGDVMLF 1471


>gi|222624007|gb|EEE58139.1| hypothetical protein OsJ_09050 [Oryza sativa Japonica Group]
          Length = 1695

 Score = 86.2 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
              QL++V   V+   N+  + R+   F   G+    + S  E       +  A + +P  
Sbjct: 1540 QQQLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMM 1598

Query: 190  -IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             + ++++   L+K    G+  IGL   +  KPL+      K  L+LG E +G+       
Sbjct: 1599 EVPVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHV 1658

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
              +   +   GI+++LNV  + A+A++    Q   A
Sbjct: 1659 LDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQQRIA 1694


>gi|108705676|gb|ABF93471.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
            Japonica Group]
          Length = 1727

 Score = 86.2 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
              QL++V   V+   N+  + R+   F   G+    + S  E       +  A + +P  
Sbjct: 1572 QQQLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMM 1630

Query: 190  -IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             + ++++   L+K    G+  IGL   +  KPL+      K  L+LG E +G+       
Sbjct: 1631 EVPVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHV 1690

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
              +   +   GI+++LNV  + A+A++    Q   A
Sbjct: 1691 LDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQQRIA 1726


>gi|218191897|gb|EEC74324.1| hypothetical protein OsI_09608 [Oryza sativa Indica Group]
          Length = 1489

 Score = 86.2 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
              QL++V   V+   N+  + R+   F   G+    + S  E       +  A + +P  
Sbjct: 1334 QQQLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMM 1392

Query: 190  -IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             + ++++   L+K    G+  IGL   +  KPL+      K  L+LG E +G+       
Sbjct: 1393 EVPVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHV 1452

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
              +   +   GI+++LNV  + A+A++    Q   A
Sbjct: 1453 LDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQQRIA 1488


>gi|323489458|ref|ZP_08094687.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis
           MPA1U2]
 gi|323396952|gb|EGA89769.1| putative rRNA methylase (SpoU class) [Planococcus donghaensis
           MPA1U2]
          Length = 157

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I RS         +       ++  +L ++     EH+       L +   +  
Sbjct: 13  PANTGNIARSCAGTGVKLHLIRPLGFSTDDKMLKRAGLDYWEHVDIHYYDGLQELFDRYK 72

Query: 204 S-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIK 261
           +   +      + +    +   +      + G E KGL  +  E        + M   I+
Sbjct: 73  NGAFYYITKFGAKTHTSYDYSDREKDHFFVFGQETKGLPKELIEQNPDFCLRIPMNDNIR 132

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN A++ +Y     
Sbjct: 133 SLNLSNTASILMYEALRQ 150


>gi|239907493|ref|YP_002954234.1| RNA methyltransferase [Desulfovibrio magneticus RS-1]
 gi|239797359|dbj|BAH76348.1| RNA methyltransferase [Desulfovibrio magneticus RS-1]
          Length = 164

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 8/153 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L++V   +  P N G++ R   A                   L ++      H+     
Sbjct: 3   ELVLVAPEI--PQNAGSVARLCAAAKTPLHFIKPLGFSLADRYLKRAGLDYWPHVNLTVW 60

Query: 193 SNLTDALQKMHSWGFQTIGLSS----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +           G + +  ++     +  P  +        L+ G E  GL  +    A
Sbjct: 61  EDFPSFAAA--RAGRRLVAATAGNRGHAAVPHHRFPFEADDILLFGTESSGLSEEVLAAA 118

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +  + + G +++LNV+NAA+V LY   +   
Sbjct: 119 HRLVTIPIWGQVRSLNVANAASVVLYEALSRVG 151


>gi|169614449|ref|XP_001800641.1| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
 gi|160707352|gb|EAT82702.2| hypothetical protein SNOG_10367 [Phaeosphaeria nodorum SN15]
          Length = 1320

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 12/164 (7%)

Query: 123  SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
             P+    R + +++V   + +  N+G + R A +F  + +        +       ++  
Sbjct: 1149 PPSEQNQRPASVILVASLIENCTNVGGLSRVAESFGLEALYIGDLRQTA-HKDFKATSVT 1207

Query: 183  ALEHIPYIR--ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI--------KNDKIAL 231
            + +H P        + D L  M   G+  +G+  +D    L  E            K  L
Sbjct: 1208 SEKHFPIHELKAGGVPDFLIAMKRNGYVAVGIEQTDQSSILGTEDTGNASLGILPRKCVL 1267

Query: 232  ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +LG+E  G+  +          +   G+ ++LNV  A  +ALY 
Sbjct: 1268 VLGSEKGGITAEVLAALDRCVEIRTVGVTRSLNVQTAGGIALYE 1311


>gi|170688538|ref|ZP_02879745.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0465]
 gi|254684375|ref|ZP_05148235.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. CNEVA-9066]
 gi|170667563|gb|EDT18319.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0465]
          Length = 162

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +       ++  +L ++     +H+      ++
Sbjct: 5   VVLYQPEIPANTGNIARTCAATGIELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQE-TATSM 251
            +  +K     F    L+   +K       + +      + G E  GL     E      
Sbjct: 65  EEFYEKNKDGEF--FYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFDHC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 123 LRIPMTDKVRSLNLSNTAAILIYEAFRQ 150


>gi|304310379|ref|YP_003809977.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1]
 gi|301796112|emb|CBL44317.1| RNA methyltransferase, TrmH family [gamma proteobacterium HdN1]
          Length = 155

 Score = 85.9 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I+R          +        +   L ++     E       
Sbjct: 2   PLHIVLYQPEIPPNTGNIIRLCANSGAQLHLIKPLGFVLDDKRLRRAGLDYHEWARVQIH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + T+ L+  +    +   +S+            D  ALILG E +GL  + ++    ++
Sbjct: 62  ESFTEFLE--NGKVGRCFAVSTKGAVGYHTPHYQDGDALILGPETRGLPEEIRKHPRVSA 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    ++LN+SNAAA+ LY       
Sbjct: 120 CIRIPMMENSRSLNLSNAAAIMLYEAWRQLN 150


>gi|302339393|ref|YP_003804599.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
 gi|301636578|gb|ADK82005.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta smaragdinae DSM
           11293]
          Length = 163

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A   D  +       +    L ++       +     
Sbjct: 5   DLHIVLVEPEIPQNTGNIARTCGALGADLHLVHPLGFSTSDRYLKRAGLDYWHLLKVHHH 64

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSM 251
            +L   L    +     +  S  +    +     D++ L+ G E  GL  +  ++   + 
Sbjct: 65  DSLQAFLNDYGNENLYFV--SKKAPLRYDHISYPDRLFLLFGKETAGLPEELLRKHRDTT 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA A+  Y     
Sbjct: 123 VRIPMVAEARSLNLSNAVAIMAYEVHRQ 150


>gi|320163521|gb|EFW40420.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 2069

 Score = 85.5 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 67/165 (40%), Gaps = 4/165 (2%)

Query: 118  TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             A      L     S L++V   ++   N+G + R+   F   G++       +      
Sbjct: 1897 VANGPVAPLAGTGRSDLIVVASLIDRVPNLGGLTRTCEIFKA-GLLVMHDLRVTTDDTFK 1955

Query: 178  KSASGALEHIPYIRISN--LTDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILG 234
            + +  A + +P  ++ +  L   L++  S G+  +G+   ++ K L       K  ++LG
Sbjct: 1956 QLSVTADKWMPLKQVEDHALPAYLKQKKSEGYTLVGVEQTAEGKRLSNFSFPQKSLILLG 2015

Query: 235  AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             E  G+     +       +   G++++LNV  +AA+ ++     
Sbjct: 2016 RERTGIPVDLIQLLDVCVEIPQFGVVRSLNVHVSAALMVWEYARQ 2060


>gi|229543212|ref|ZP_04432272.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans
           36D1]
 gi|229327632|gb|EEN93307.1| RNA methyltransferase, TrmH family, group 2 [Bacillus coagulans
           36D1]
          Length = 158

 Score = 85.5 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +H+  +   +L
Sbjct: 6   VVLYQPEIPANTGNIARTCAGTGTTLHLIRPLGFSTDDKMLKRAGLDYWKHVNIVYYDSL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLR-PKTQETATSM 251
            +  +   +   +   + +  +KP      +D    +  + G E  GL     ++     
Sbjct: 66  EEFFE--KNADGEVYYIETFGEKPFTDFDFSDPDKNLYFMFGRETSGLPNDLIEKNKDRC 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 124 LRIPMTDKVRSLNLSNTAAILVYEALRQ 151


>gi|86134818|ref|ZP_01053400.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
 gi|85821681|gb|EAQ42828.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
          Length = 152

 Score = 85.5 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 140 HVND---PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            + +   P N+G + RSA       I T       ++    K A+GA   +PY    N  
Sbjct: 13  GIQNGKTPENLGVLWRSAQNMGASFIFTIGNRYAKQACDTHK-ATGA---MPYFHYKNFD 68

Query: 197 DALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           D    +   G   +G+  D K   LE      +   +LGAE  G+     E A  +    
Sbjct: 69  DFFDNLPK-GAMLVGVELDEKSVQLETFTHPKRCVYLLGAEDHGIPKLAIEKAHHLVK-- 125

Query: 256 MPGIIKALNVSNAAAVALYITQ 277
               + +LNV+ A ++ +Y  Q
Sbjct: 126 FKSEL-SLNVAVAGSIVMYDRQ 146


>gi|330872262|gb|EGH06411.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 60

 Score = 85.5 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G EGKG+R  T+E    +  L M G + +LNVS A  V L+      +
Sbjct: 5   GEEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 52


>gi|156101974|ref|XP_001616680.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805554|gb|EDL46953.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 2316

 Score = 85.5 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 5/152 (3%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            N +L++V   ++   N+  + R+   F    ++        +     K +S A + +   
Sbjct: 2165 NKKLIVVASLIDKVPNLAGLCRTCEFFKVQKLMLHNASIVKDFQ-FQKISSTANKWMNIG 2223

Query: 191  RISNLTDALQKM--HSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +    D L+ +      +  +GL  +    PL++    ++  LILG E +GL       
Sbjct: 2224 ELKK-GDILKYLMRKKKKYAIVGLEQTKCSVPLKRFAFPERTILILGDEKEGLPSSVLLL 2282

Query: 248  ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  +   GII++LNV  +AAV +Y     
Sbjct: 2283 LHHCVEIPGKGIIRSLNVHVSAAVTIYEYCRQ 2314


>gi|315186581|gb|EFU20340.1| RNA methyltransferase, TrmH family, group 2 [Spirochaeta
           thermophila DSM 6578]
          Length = 154

 Score = 85.5 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 3/144 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +        E   L ++       +     S+ 
Sbjct: 5   VVLHEPEIPQNTGNIARTCAATGAVLHLIEPLGFSLEDRYLRRAGLDYWPMVDLRLHSSW 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
              L++          LS+   +        D+  L+ G E  GL P+  E     +  +
Sbjct: 65  DAFLEEERPSSLFL--LSTRGTRSYHTCSFPDETYLVFGKETAGLPPRILEAFPDRVVRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            M    ++LN+SNA A+ +Y    
Sbjct: 123 PMRAGARSLNLSNAVAILVYEALR 146


>gi|15605269|ref|NP_220055.1| rRNA methylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789277|ref|YP_328363.1| rRNA methylase [Chlamydia trachomatis A/HAR-13]
 gi|237802969|ref|YP_002888163.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804891|ref|YP_002889045.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311358|ref|ZP_05353928.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           6276]
 gi|255317659|ref|ZP_05358905.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           6276s]
 gi|255348917|ref|ZP_05380924.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           70]
 gi|255503457|ref|ZP_05381847.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           70s]
 gi|255507136|ref|ZP_05382775.1| putatve rRNA methylase (SpoU family) protein [Chlamydia trachomatis
           D(s)2923]
 gi|3328978|gb|AAC68142.1| rRNA Methylase (SpoU family) [Chlamydia trachomatis D/UW-3/CX]
 gi|76167807|gb|AAX50815.1| rRNA methylase, SpoU family [Chlamydia trachomatis A/HAR-13]
 gi|231273191|emb|CAX10104.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274203|emb|CAX10997.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           B/Jali20/OT]
 gi|289525585|emb|CBJ15063.1| putatve rRNA methylase (SpoU family) [Chlamydia trachomatis
           Sweden2]
 gi|296435145|gb|ADH17323.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis E/150]
 gi|296438865|gb|ADH21018.1| putative rRNA methylase (SpoU family) protein [Chlamydia
           trachomatis E/11023]
 gi|297748670|gb|ADI51216.1| rRNA methylase, SpoU family [Chlamydia trachomatis D-EC]
 gi|297749550|gb|ADI52228.1| RRNA methylase, SpoU family [Chlamydia trachomatis D-LC]
          Length = 151

 Score = 85.5 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P N G I R+ VA   + I+            + ++     E +    + +L
Sbjct: 3   IVLHNPDIPQNTGNIGRTCVALGAELILVRPLGFSLADKFVKRAGMDYWERLSLSVVDSL 62

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
            +AL      G    +   L++       E+E+  D    I GAE KGL     +  ++ 
Sbjct: 63  EEAL-----LGVPKERIFCLTTKGSSYYGERELPLDGT-YIFGAESKGLPQTVLDAYSSQ 116

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++ M    ++LN++ +  + +Y     
Sbjct: 117 CLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|119577976|gb|EAW57572.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae),
           isoform CRA_b [Homo sapiens]
          Length = 158

 Score = 85.5 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 15/106 (14%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGL-------SSDSKK----PLEQEIKNDKIALI 232
           +E +      +LT  LQ     G+   G           S +       + +      L+
Sbjct: 1   MEVMDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLV 60

Query: 233 LGAEGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVALY 274
           LG EG GL  + Q +   +  +     +P  +++LNVS AA + L+
Sbjct: 61  LGNEGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILLH 106


>gi|307944162|ref|ZP_07659503.1| tRNA/rRNA methyltransferase [Roseibium sp. TrichSKD4]
 gi|307772508|gb|EFO31728.1| tRNA/rRNA methyltransferase [Roseibium sp. TrichSKD4]
          Length = 159

 Score = 85.5 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 51/136 (37%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ++R A     D  +      P  ++ L ++    LE    IR  N         
Sbjct: 12  PQNTGTMVRMAACLGVDVHLIEPAGFPISNSALKRAGMDYLERARLIRHLNFDTFDNWRQ 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           S   + + L++ S       I  D   L+LG E  G+     E   +   + M   ++++
Sbjct: 72  SENRRLLLLTTKSSDSYTNFIFKDSDILLLGRESSGVPETVHEGVDARLTIPMAEGLRSI 131

Query: 264 NVSNAAAVALYITQNH 279
           NV+ +A + L      
Sbjct: 132 NVAISAGMVLGEALRQ 147


>gi|88808705|ref|ZP_01124215.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. WH 7805]
 gi|88787693|gb|EAR18850.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. WH 7805]
          Length = 165

 Score = 85.5 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 9/156 (5%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++ S L + L     P N G I R+  AF     +        +   L ++      H+ 
Sbjct: 4   LKPSPLSVALFEPRIPPNTGNIARTCAAFDLPLSLIEPLGFSIDDRQLKRAGLDYWPHVN 63

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               ++       +     + IG S      L+         L+ G E  GL    ++  
Sbjct: 64  LSVHTDFKAFKTSLAKPS-RVIGCSRRDGVALQDFSFEQGDVLLFGREDTGLPEPVRDQC 122

Query: 249 TSMAHLHMP--------GIIKALNVSNAAAVALYIT 276
             +  + MP        G +++LN+S A A+A +  
Sbjct: 123 DDILTIPMPCSAGVDGQGGVRSLNLSVACAIACFQA 158


>gi|313904349|ref|ZP_07837727.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
 gi|313470899|gb|EFR66223.1| tRNA/rRNA methyltransferase (SpoU) [Eubacterium cellulosolvens 6]
          Length = 163

 Score = 85.5 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           ++ ++     + +   R  + 
Sbjct: 6   IVLHEPEIPANTGNIGRTCVAAGASLHLIEPLGFRLNEKMIRRAGMDYWDQLDVTRYVDY 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            D +      G +    S+ + +        D   ++ G E  G+  +      +    +
Sbjct: 66  EDFMS--QHPGAKIYYASTKASRNYTDVSFEDDCYIMFGKESAGIPEEILRENDATAIRI 123

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+ N+ A+ LY     
Sbjct: 124 PMSPDIRSLNLGNSVAIVLYEALRQ 148


>gi|315648965|ref|ZP_07902059.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
           V453]
 gi|315275646|gb|EFU39000.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus vortex
           V453]
          Length = 154

 Score = 85.5 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++   L ++       +      + 
Sbjct: 5   IVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + L+ ++  G      +  +K+ ++ E ++    L+ G E KGL P+     +     +
Sbjct: 65  EE-LKALYPDGRYFYATTKATKRYMDIEYQDGDF-LVFGKETKGLPPELLAANSEHCIRM 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN+AA+ +Y       
Sbjct: 123 PMTDKVRSLNLSNSAAIMVYEALRQLN 149


>gi|226304893|ref|YP_002764851.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226184008|dbj|BAH32112.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 230

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 69/164 (42%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +D+ R++  + + +  +D  NIG ++R+A AF+   +    R          
Sbjct: 66  TREAIVEDIDSRRHTMHVAIENFAHDA-NIGTVVRTANAFAAAAVHIVGRR-----RWNR 119

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +   +  +++++ ++         + +  +    PLE      +  L+ G E
Sbjct: 120 RGAMVTDRYQHIVHHADISELVEYARENSLTIVAVDNTPGSVPLETASLPRECILLFGQE 179

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+    +E A+    +   G  +++N   AA +A++   + H
Sbjct: 180 GPGVTEHAKEVASMTVSIAQFGSTRSINAGVAAGIAMHAWVREH 223


>gi|254230740|ref|ZP_04924067.1| hypothetical protein TBCG_00375 [Mycobacterium tuberculosis C]
 gi|124599799|gb|EAY58809.1| hypothetical protein TBCG_00375 [Mycobacterium tuberculosis C]
          Length = 246

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   +    R          + A     + 
Sbjct: 65  DTRRHPLHVAIENFGHDANIGSVVRTANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQ 119

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 + T  L+     G   + +        LEQ     +  L+ G EG G+    + 
Sbjct: 120 RLCHHDSTTGLLEFAAGAGLTVVAVDNVPGAARLEQTALPRECLLLFGQEGPGITDDARA 179

Query: 247 TATSMAHLHMPGIIKALNVSNAAA 270
            A     +   G  +++N   AA 
Sbjct: 180 GAAVTVSIAQFGSTRSINAGVAAG 203


>gi|269957913|ref|YP_003327702.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306594|gb|ACZ32144.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 283

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 26/173 (15%)

Query: 124 PTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
             LDA R+   +L + +++     NIG+++R+A AF+  G+    R          + A 
Sbjct: 107 AALDARRDPARELHVAIENWAHDLNIGSVVRTANAFNVAGVHIVGRR-----RWNRRGAM 161

Query: 182 GALEHIPYIRISN------------LTDALQKM------HSWGFQTIGLS-SDSKKPLEQ 222
               ++      +            L++  + +       + G   +G+       PLE 
Sbjct: 162 VTDRYLHVYHHEDAAALAAWAAAHELSEPRKPLGSGESDKAVGLPLVGIDNVPGSVPLEG 221

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                   L+LG E  GL    Q     + H+   G  ++LN   A A+A++ 
Sbjct: 222 FALPASCVLVLGQESTGLTAPMQAACDVVLHITQHGSTRSLNAGAAGAIAMFA 274


>gi|255318834|ref|ZP_05360060.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|262378907|ref|ZP_06072064.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255304090|gb|EET83281.1| RNA methyltransferase, TrmH family [Acinetobacter radioresistens
           SK82]
 gi|262300192|gb|EEY88104.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 158

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 9/151 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N+
Sbjct: 4   VVLFEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWENI 63

Query: 196 TDALQKMHSWGFQTIG---LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETA 248
            + L  + + G        L++   +       N  +AL++G E +GL  + +    E  
Sbjct: 64  EECLAHLQTKGIGIDAVYPLTTKGFETPHTADLNRPVALLMGPETRGLPEQVRLMFPEQ- 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                L M    ++LN+SNA AV +Y     
Sbjct: 123 -HWIRLPMAPESRSLNLSNATAVIVYEAWRQ 152


>gi|241895125|ref|ZP_04782421.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|241871621|gb|EER75372.1| hypothetical RNA methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 201

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 15/177 (8%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP------ 170
           +T   +  +LD  R   ++ ++ +++   N  + +R++ AF    +I     +P      
Sbjct: 22  KTDDEIRASLDMHRGK-MISIMQNLSHDFNKASAVRNSNAFGMRKLIFLNPENPAIPEAT 80

Query: 171 -SESAVLAKSASGAL--EHIPYIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEI 224
                   + + G    EHI + RI +     + +H  G+    +        + L    
Sbjct: 81  EGIKKWDRRGSLGTQNYEHIEHHRIIDYPAIFEHLHQEGYTIYAVDNTPGYDPQSLYDMH 140

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQNH 279
              K A + G E  GL       A +M ++   G ++++NV  A  V    Y +Q+ 
Sbjct: 141 FPAKSAFLFGEEKLGLADDLINAADAMVYIPQYGSVRSINVGVAHGVIAAFYASQHQ 197


>gi|66822149|ref|XP_644429.1| hypothetical protein DDB_G0273625 [Dictyostelium discoideum AX4]
 gi|66822933|ref|XP_644821.1| hypothetical protein DDB_G0273135 [Dictyostelium discoideum AX4]
 gi|60472552|gb|EAL70503.1| hypothetical protein DDB_G0273625 [Dictyostelium discoideum AX4]
 gi|60472836|gb|EAL70785.1| hypothetical protein DDB_G0273135 [Dictyostelium discoideum AX4]
          Length = 306

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 28/154 (18%)

Query: 124 PTLDAVRNSQ--LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            + D ++N    L ++L+     HN+G++ R++     + I          +  ++K + 
Sbjct: 147 KSFDPIKNKPFGLSVLLEDCRSLHNVGSVFRTSDGAGFNHIYLCGLTGHPPNDQISKLSL 206

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKND------------ 227
           G+ + + +   ++    ++K+     + IG+  + +S   L    K              
Sbjct: 207 GSEDMVNWSVSNDSIGVIKKLKELNVKIIGIEQTPNSVSLLNSIDKIKNLALISSSLENN 266

Query: 228 ------------KIALILGAEGKGLRPKTQETAT 249
                        IA+I+G E  G+  +  E   
Sbjct: 267 NNTNNNNEEEYHPIAIIMGNEIAGMSDEAIELCD 300


>gi|159903443|ref|YP_001550787.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888619|gb|ABX08833.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9211]
          Length = 162

 Score = 85.1 bits (210), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 10/156 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V+   L + L     P N G I R+  AF     +        +S +L ++     + I 
Sbjct: 3   VKPHHLKVALFEPRIPQNTGNIGRTCAAFQIPLHLIKPLGFSLDSKLLKRAGLDYWDFID 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                N +    K+H    + IG S     PL +     +  L+ G E  GL    +E  
Sbjct: 63  LTTHENFSAF--KIHISDKRLIGFSKKDGIPLNKITFKPEDVLLFGREDTGLPEDIREAC 120

Query: 249 TSMAHLHMPGIIK--------ALNVSNAAAVALYIT 276
             M  + MPG           +LN+S+A A+A Y  
Sbjct: 121 DLMVSIPMPGKADSDGSNGVRSLNLSSACAIASYSA 156


>gi|262371910|ref|ZP_06065189.1| rRNA methylase [Acinetobacter junii SH205]
 gi|262311935|gb|EEY93020.1| rRNA methylase [Acinetobacter junii SH205]
          Length = 157

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E    +   N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMLIWDNI 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
              L  + S G      L++           N  +AL++G E +GL    +         
Sbjct: 64  ELCLADLKSKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRMMFPQEQWI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 124 RLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|229826636|ref|ZP_04452705.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC
           49176]
 gi|229789506|gb|EEP25620.1| hypothetical protein GCWU000182_02012 [Abiotrophia defectiva ATCC
           49176]
          Length = 164

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I R+ VA      +            + ++     + +      + 
Sbjct: 3   IILHEPEIPANTGNIGRTCVATGTALHLIRPLGFDISDKAVRRAGMDYWKDLELYVYEDF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D +    +   +    ++ +KK   + I  +   ++ G E  G+  +   +   +   +
Sbjct: 63  NDFVS--KNPNARIYMATTKAKKAYTEVIYEENDFIMFGKESAGIPEEILIKYEDTSVRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+SN+ A+ LY     
Sbjct: 121 PMIGEIRSLNLSNSVAIMLYEALRQ 145


>gi|229493085|ref|ZP_04386880.1| spou rrna methylase family protein [Rhodococcus erythropolis SK121]
 gi|229320115|gb|EEN85941.1| spou rrna methylase family protein [Rhodococcus erythropolis SK121]
          Length = 230

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 69/164 (42%), Gaps = 8/164 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   +D+ R++  + + +  +D  NIG ++R+A AF+   +    R          
Sbjct: 66  TREAIVADIDSRRHTMHVAIENFAHDA-NIGTVVRTANAFAAAAVHIVGRR-----RWNR 119

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +   +  +++++ ++         + +  +    PLE      +  L+ G E
Sbjct: 120 RGAMVTDRYQHIVHHADISELVEYARENSLTIVAVDNTPGSVPLETASLPRECILLFGQE 179

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           G G+    +E A+    +   G  +++N   AA +A++   + H
Sbjct: 180 GPGVTDHAKEVASMTVSIAQFGSTRSINAGVAAGIAMHAWVREH 223


>gi|260437718|ref|ZP_05791534.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
           DSM 2876]
 gi|292809741|gb|EFF68946.1| RNA methyltransferase, TrmH family, group 2 [Butyrivibrio crossotus
           DSM 2876]
          Length = 164

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           +L ++     + +      + 
Sbjct: 4   IVLHEPEMPANTGNIGRTCVATDTVLHLIEPLGFKINDKMLKRAGLDYWDKLDVRIYDDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            D L    + G +    ++ + +        D   ++ G E  G+     +    +   +
Sbjct: 64  DDFLA--KNPGAKIYMATTKAARSYTDVQYEDDCYIMFGKESAGIPESILQKYQDTAVRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHF 280
            M G I++LN+SN+ A+ LY    QN+F
Sbjct: 122 PMWGDIRSLNLSNSVAIVLYEALRQNNF 149


>gi|224369437|ref|YP_002603601.1| rRNA methylase-family protein [Desulfobacterium autotrophicum HRM2]
 gi|223692154|gb|ACN15437.1| rRNA methylase-family protein [Desulfobacterium autotrophicum HRM2]
          Length = 161

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           NIG + RSA       I T       +   + ++       IP        D    + H 
Sbjct: 26  NIGTLWRSAYILGASFIFTIGNRYSRQPGDVTRT----WTRIPLFHHDTFEDFYSHLPHD 81

Query: 205 WGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
              + IG+   D+   L++     +   +LG E  GL P   E    +  L   G   +L
Sbjct: 82  T--RLIGVEMGDTAVALDRFDHPSRAVYLLGNEQLGLSPGVMEKCHRLVKLP--GAF-SL 136

Query: 264 NVSNAAAVALYIT 276
           NV+ A ++ +Y  
Sbjct: 137 NVAVAGSLVMYDR 149


>gi|311744568|ref|ZP_07718368.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311312187|gb|EFQ82104.1| TrmH family RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 209

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 118 TAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                  T+DA+      R     + +++     NIG+I+R+A AF+   +    R    
Sbjct: 39  VDRYRYWTVDAIVADLDDRRHGFHVAIENWQHDFNIGSIVRTANAFAAAEVHIIGRR--- 95

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIA 230
                 + A     +      + + +      +     +G+   D   P+E  +      
Sbjct: 96  --RWNRRGAMVTERYQHVRHHATVEEFAHWAGAEDLPVLGIDNVDGSVPIESAVLPRSCV 153

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           L+ G EG GL P+ +    S   +   G  +++N
Sbjct: 154 LVFGQEGPGLSPEARRLCRSTLSIAQYGSTRSIN 187


>gi|325123237|gb|ADY82760.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 157

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNI 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
              L  + + G      L++           N  +AL++G E +GL    +         
Sbjct: 64  ELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQEQWI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 124 RLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|289811119|ref|ZP_06541748.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 113

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-SESAVLAKSASGALEH 186
           A R   L + ++ V+ PHN+ AI+R+A A     +       P S    +A +A+G+   
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEV---HAIWPGSRMRTMASAAAGSNSW 70

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDK 228
           +       + DA+  +   G Q +    SD      +      
Sbjct: 71  VQVKTHRTIDDAVAHLKGRGMQILATHLSDKAVDFREIDYTRP 113


>gi|293610921|ref|ZP_06693220.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|299768963|ref|YP_003730989.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1]
 gi|292826573|gb|EFF84939.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|298699051|gb|ADI89616.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. DR1]
          Length = 157

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNI 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
              L  + + G      L++           N  +AL++G E +GL    +         
Sbjct: 64  ELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQEQWI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 124 RLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|238064044|ref|ZP_04608753.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237885855|gb|EEP74683.1| tRNA/rRNA methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 124

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%)

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G   +G          +         ++G E  GL    +E    +    M G   +LN 
Sbjct: 45  GMSIMGTDERGILDAAEYDFTQPTVTLIGNETTGLSSGWREACDQLVRTPMFGSASSLNA 104

Query: 266 SNAAAVALYIT 276
           + AA V LY +
Sbjct: 105 ATAATVMLYES 115


>gi|253686540|ref|YP_003015730.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753118|gb|ACT11194.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 154

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R A    C   +        E   L ++     +     R  N  D L  +   
Sbjct: 14  NTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHKNYQDFLAAV--P 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
           G +    ++   +P +Q        L+ G+E  GL  + +    +     + M    ++L
Sbjct: 72  GKRIFACTTKGSRPYDQPAYQPGDVLLFGSETSGLPDEIRNGFESDFRIRIPMQSNNRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNA A+  Y     
Sbjct: 132 NLSNAVAIISYEAWRQ 147


>gi|281211833|gb|EFA85995.1| TAR RNA loop binding protein [Polysphondylium pallidum PN500]
          Length = 1614

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 67/156 (42%), Gaps = 4/156 (2%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            A    QL++V   V+   N+  + R++  F+ + ++ +K+   ++  +  + +  A   +
Sbjct: 1455 ARTRQQLIIVATFVDKIPNLAGLARTSEIFNVESLVVSKKKVAND-PMFQQISVSAERWL 1513

Query: 188  PYIRISN--LTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKT 244
            P   +    L + L      G+  +G+   S    L +    +K  L+LG E +G+  + 
Sbjct: 1514 PMTEVEEHQLREYLLSKKQEGYTLLGVEQTSTSSQLNEYKFPEKAVLLLGKEKEGIPTEY 1573

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                     +   GII++LNV  + ++ ++      
Sbjct: 1574 INLLDKCIEIPQLGIIRSLNVHVSGSILMWEYTKQM 1609


>gi|89097638|ref|ZP_01170526.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
           B-14911]
 gi|89087497|gb|EAR66610.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. NRRL
           B-14911]
          Length = 159

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++  +L ++     +H+  +   +L
Sbjct: 7   VVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQHVTILYYDSL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETA-TSM 251
            +  +   + G +   L+   +KP      +DK      I G E  GL  + +E      
Sbjct: 67  DEFYE--KNAGGEFFYLTKFGQKPYTSFEYSDKEKDYYFIFGKETTGLPAEVKENNKDRA 124

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G +++LN+SN AA+ +Y     
Sbjct: 125 LRIPMTGNVRSLNLSNTAAILIYEALRQ 152


>gi|253579603|ref|ZP_04856872.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849104|gb|EES77065.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 166

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L +VL     P N G I R+ VA      +            L ++     + +    
Sbjct: 2   AKLNIVLHEPEIPANTGNIGRTCVATGTRLHLIEPLGFSLSEKALKRAGMDYWKDLDVTT 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ET 247
             +  D L+   + G +    ++ + +        +   ++ G E  G+         ET
Sbjct: 62  YLDFEDFLE--KNPGAKIYYATTKAPQTYTDVHYEEDCYIMFGKESAGIPEDILVNNQET 119

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
                 + M G I++LN+SN+ A+ LY    QN+F
Sbjct: 120 C---VRIPMIGDIRSLNLSNSVAIVLYEALRQNNF 151


>gi|296004590|ref|XP_001351812.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
 gi|225631701|emb|CAD51619.2| RNA methyltransferase, putative [Plasmodium falciparum 3D7]
          Length = 351

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +A+   P LS  ++ ++    L+VLD +   +N+G IL  A +F+ D +  TK  +   +
Sbjct: 182 VAIIKIPCLSNKINNIK---FLLVLDRIRYAYNLGKILNVAYSFNIDCLYYTKHTADPYN 238

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-------QEIKN 226
             + +   G   +IP+I   N  +  Q         I   +  +           +    
Sbjct: 239 PKVMEITKGTHLNIPHI-FGNYQELEQLCKEHKLIPIVAHTKGQNIDTFFKKNKIKNNNI 297

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + I LILG+E  G      + A     L M  +  +LNV  AA++ ++  + 
Sbjct: 298 NGICLILGSESTGPHTDVFKYA-HPIQLPMHEMTNSLNVFVAASILIHYIKK 348


>gi|169632604|ref|YP_001706340.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|184159297|ref|YP_001847636.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|260557293|ref|ZP_05829509.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|332872557|ref|ZP_08440526.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6014059]
 gi|169151396|emb|CAP00121.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
 gi|183210891|gb|ACC58289.1| predicted rRNA methylase (SpoU class) [Acinetobacter baumannii
           ACICU]
 gi|193078167|gb|ABO13111.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|260409399|gb|EEX02701.1| rRNA methylase [Acinetobacter baumannii ATCC 19606]
 gi|322509208|gb|ADX04662.1| rRNA methylase [Acinetobacter baumannii 1656-2]
 gi|323519237|gb|ADX93618.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332739243|gb|EGJ70101.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6014059]
          Length = 157

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNI 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
              L  + + G      L++           N  +AL++G E +GL    +         
Sbjct: 64  ELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQEQWI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 124 RLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|332637245|ref|ZP_08416108.1| tRNA/rRNA methyltransferase (SpoU) [Weissella cibaria KACC 11862]
          Length = 204

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAK-----SASG 182
           R   ++  L ++    N    +R+  AFS   I+     +P   E+   AK      A G
Sbjct: 34  RRGYMITALQNLTHDFNKATAVRNHNAFSGREIVFLNPENPMDPENEEGAKKWNKTGAVG 93

Query: 183 AL--EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---KNDKIALILGAEG 237
           A   EHI + +I++      + H+ G+    + +     L         +K   + G E 
Sbjct: 94  AQHYEHISHHKITDYQKLFDQWHAEGYTIYAVDNTPGYELHNVFETALPEKSVFLFGEEQ 153

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQ 277
            GL  +  + A +M ++   G +++LNVS A  +   LY  Q
Sbjct: 154 IGLADELIQAADAMIYIPQTGSVRSLNVSVAHGIIAALYTAQ 195


>gi|239502303|ref|ZP_04661613.1| rRNA methylase (SpoU class) [Acinetobacter baumannii AB900]
          Length = 157

 Score = 84.7 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNI 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
              L  + + G      L++           N  +AL++G E +GL    +         
Sbjct: 64  ELCLADLKAKGVEHIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQEQWI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 124 RLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|320451508|ref|YP_004203604.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus
           SA-01]
 gi|320151677|gb|ADW23055.1| RNA methyltransferase, TrmH family, group 2 [Thermus scotoductus
           SA-01]
          Length = 149

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+A A      +            L ++      H+        
Sbjct: 4   LVLFQPEIPQNTGNIARTAAALGWPLHLIRPLGFRLSDPRLKRAGLDYWPHVDLRLHDTW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q +   G +    S+     L          L+ G E +GL P+         ++ 
Sbjct: 64  EAFWQSLP-PGARVWAFSARGDTCLYGVSFQPGDYLLFGPETRGLPPEVLTLFPG-VYIP 121

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           MPG++++LN++ A  VA Y      
Sbjct: 122 MPGLVRSLNLAVAVGVAAYEAYRQL 146


>gi|313680687|ref|YP_004058426.1| tRNA/rRNA methyltransferase (spou) [Oceanithermus profundus DSM
           14977]
 gi|313153402|gb|ADR37253.1| tRNA/rRNA methyltransferase (SpoU) [Oceanithermus profundus DSM
           14977]
          Length = 149

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 61/144 (42%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G + R+A A   +  +            L ++      H+ Y+   + 
Sbjct: 4   IVLYEPEIPQNVGNVARTAAATRTELHLVRPFGFRWGDPRLKRAGLDYWPHVRYVLHDSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T  L+ +   G +    S+ +++ L +   +    L+ G E +GL         ++  + 
Sbjct: 64  TAFLEALP-AGARVWAFSTKAERSLYEVRFHPDDYLLFGPETRGLPQAVLARFPAL-RIP 121

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           MPG +++LN++ +  VA+Y     
Sbjct: 122 MPGPVRSLNLAVSVGVAVYEVLRQ 145


>gi|327438727|dbj|BAK15092.1| predicted rRNA methylase [Solibacillus silvestris StLB046]
          Length = 157

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     EH+  +   +L
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWEHVNVVYHDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPK-TQETATSMAH 253
            D ++         I   SD          +++ +  + G E  GL  +  +E A     
Sbjct: 65  EDFIEYSKDGDVYLIETYSDEPFTTHDFSNSERDLYFMFGRETTGLPKEFAKERADMCLR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           +     I++LN+SN AA+ +Y     
Sbjct: 125 IPQSDHIRSLNLSNTAAIVIYEVLRQ 150


>gi|68065966|ref|XP_674967.1| RNA methyltransferase [Plasmodium berghei strain ANKA]
 gi|56493872|emb|CAH94657.1| RNA methyltransferase, putative [Plasmodium berghei]
          Length = 296

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 4/153 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +  + L+ LD +   +N+G IL  A + + D I          +  +     G    IPY
Sbjct: 146 KKIKFLLALDRIRYAYNLGKILNIAYSMNIDSIFYIHNTVDPYNHNVMDITRGKHLFIPY 205

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQET 247
             + + ++  +         I   ++   P    + + N  I LILG E  G        
Sbjct: 206 -NVGSYSELNKFCEQNNLVPIVAHTNGIAPQAFLKNLTNQGICLILGNESYGPHKDIFSF 264

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A     L M  +  +LNVS AA + ++  +N  
Sbjct: 265 A-KPICLPMHEMTNSLNVSVAAGIIIHYLKNAL 296


>gi|153853541|ref|ZP_01994921.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814]
 gi|149753696|gb|EDM63627.1| hypothetical protein DORLON_00910 [Dorea longicatena DSM 13814]
          Length = 163

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            L ++     EH+      + 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKNLKRAGMDYWEHLDVRTYIDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+   + G +    ++ + K   +        ++ G E  G+  +   E       +
Sbjct: 64  NDFLE--KNPGAKIYMATTKAPKVYTEVNYEPDCYIMFGKESAGIPEEILVEHKEDCVRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M G I++LN+ N+ A+ LY    QN FA
Sbjct: 122 PMVGDIRSLNLGNSVAIVLYEALRQNGFA 150


>gi|32472821|ref|NP_865815.1| SpoU rRNA methylase family [Rhodopirellula baltica SH 1]
 gi|32444058|emb|CAD73500.1| spoU rRNA Methylase family [Rhodopirellula baltica SH 1]
          Length = 177

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 3/160 (1%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L+S +L         +VL     P N G I R+ VA      I        +   L ++ 
Sbjct: 13  LMSDSLPLSVQPPAHVVLYQPEIPQNTGNIGRTCVAVGAKLWIVEPASFQFDEKRLRRAG 72

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
               +++ +  + +     ++++   F     S  +K+ + +        L+ G E  GL
Sbjct: 73  LDYWQYLDWEPVPSWDALCERLNPERFFFF--SKFAKRTVWEAEFALGDVLVFGRETSGL 130

Query: 241 RPKTQETAT-SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +        L M   +++LN+S  A +ALY  Q  
Sbjct: 131 PASILKPDDPRSLRLPMREQVRSLNLSVTAGIALYEHQRQ 170


>gi|262281254|ref|ZP_06059036.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262257485|gb|EEY76221.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 157

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNI 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
              L  + + G      L++           N  +AL++G E +GL  + +         
Sbjct: 64  ELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALLMGPETRGLPERVRLMFPQEQWI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 124 RLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|225715396|gb|ACO13544.1| RNA methyltransferase-like protein 1A [Esox lucius]
          Length = 329

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 12/196 (6%)

Query: 2   NLISKKKSEKIFSLKDSHYA-KLRRNHRDYKKMQ---SFNQKSRHTSQPENLFLYGVHTV 57
           N      SE     KD     K  R     K++    S  +          + + G   +
Sbjct: 105 NYSPSTTSEHTTYPKDQLGGLKFERALPGDKRLARVVSVARSRTFREHQGKILIEGRRLI 164

Query: 58  SAALNNPSRKIFQLLATKNALARLDWD-ANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL 116
             AL   +       ++ + L+ L  D         VK    +    +V  + V   +A+
Sbjct: 165 CDALAAGANPQMVFFSSLDRLSELPLDKLKRATLVKVKFEDIKIWSDVVAPQGV---IAI 221

Query: 117 ETAP----LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE 172
            + P    L  P     ++  L ++ D+V DP N+G ILR AVA  C  I+ TK      
Sbjct: 222 FSRPDPSQLTFPPDQRSQSLPLSLICDNVRDPGNLGTILRCAVAAGCHNILLTKGCVDVW 281

Query: 173 SAVLAKSASGALEHIP 188
                +   G +   P
Sbjct: 282 EPKGFEQRWGPISAFP 297


>gi|149371529|ref|ZP_01890945.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49]
 gi|149355156|gb|EDM43716.1| hypothetical protein SCB49_09000 [unidentified eubacterium SCB49]
          Length = 153

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 15/140 (10%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA+ R+A       I T  +   ++++        A++ +PY    +  D  + + 
Sbjct: 21  PANLGALWRTAQNMGASYIFTIGKRYANQASDTHN----AVKSMPYFHYKSFDDFFEHLP 76

Query: 204 SWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
             G + +G+  D   + LE      +   +LGAE  GL  +  + +  +         K 
Sbjct: 77  K-GVRIVGVEKDDRAENLEDFNHPRRCVYLLGAEDHGLTKEAIDKSHFLV------QFKS 129

Query: 262 --ALNVSNAAAVALYITQNH 279
             +LNV+ A ++ LY    +
Sbjct: 130 EFSLNVAIAGSIVLYDRSRN 149


>gi|213861517|ref|ZP_03385987.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 82

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G+  +  SSD  + L      +K+ L+LG E   L    +E       ++  G ++
Sbjct: 2   FRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVE 61

Query: 262 ALNVSNAAAVAL--YITQN 278
           +LNVS A  V L  +  QN
Sbjct: 62  SLNVSVATGVLLAEWWRQN 80


>gi|15618570|ref|NP_224856.1| rRNA methylase [Chlamydophila pneumoniae CWL029]
 gi|15836192|ref|NP_300716.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|16752380|ref|NP_444639.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|33242017|ref|NP_876958.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|4376959|gb|AAD18799.1| rRNA Methylase [Chlamydophila pneumoniae CWL029]
 gi|8163363|gb|AAF73627.1| spoU rRNA methylase family protein [Chlamydophila pneumoniae AR39]
 gi|8979032|dbj|BAA98867.1| rRNA methylase [Chlamydophila pneumoniae J138]
 gi|33236527|gb|AAP98615.1| putative rRNA methylase [Chlamydophila pneumoniae TW-183]
 gi|269302444|gb|ACZ32544.1| RNA methyltransferase, TrmH family [Chlamydophila pneumoniae
           LPCoLN]
          Length = 156

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P N G I R+ VA   + I+            + ++     + +    + ++
Sbjct: 3   VVLHCPDIPQNTGNIGRTCVALGAELILVRPLGFSLADKFVKRAGMDYWDKLQLTVVDSI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----ATSM 251
            +AL  +     Q   LS+       +         + G+E KGL  +  +         
Sbjct: 63  EEALHDVPED--QIFCLSTKGSASYTEFSLPSSGTYVFGSESKGLPKEILKKYYKNC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN++ +  + LY     
Sbjct: 118 LRIPMQQDIRSLNLATSVGIVLYEVVRQ 145


>gi|119510692|ref|ZP_01629820.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
 gi|119464646|gb|EAW45555.1| hypothetical protein N9414_22008 [Nodularia spumigena CCY9414]
          Length = 153

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++      +L
Sbjct: 4   VVLVYPQIPPNTGNIARTCAATGTELHLVAPLGFEISDRYLKRAGLDYWPYVKLHYHESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                     G + +G +                 L+ G+E  GL         +  ++ 
Sbjct: 64  EAFQATHQERGGRCLGFTVRGNFNYASFQFQADDWLLFGSETTGLPSTILSDCDATLYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + AV+L+  +    
Sbjct: 124 MAEPHVRSLNLSVSVAVSLFEARRQLG 150


>gi|303277263|ref|XP_003057925.1| RNA methyltransferase [Micromonas pusilla CCMP1545]
 gi|226460582|gb|EEH57876.1| RNA methyltransferase [Micromonas pusilla CCMP1545]
          Length = 1938

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 130  RNSQLLMV---LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            R   L++V   LD +    N+  + R+      + ++   + + +      + +  A +H
Sbjct: 1785 RPPGLVVVASLLDRIP---NLAGLARTCEVMGAEALVMRDKKATT-RPEFTQISVTAEKH 1840

Query: 187  IPYIRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            +P   +    L   L  +   G+  IGL  +     LE      K AL+LG E +G+   
Sbjct: 1841 LPVREVPARRLASYLCALAREGYALIGLEQTRGAVALETFQFPKKTALVLGREREGVDAD 1900

Query: 244  TQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277
                      +   G+I++LNV  +A++A+  Y  Q
Sbjct: 1901 LLSLLDECVVIKQVGLIRSLNVHVSASIAIHAYAAQ 1936


>gi|261819493|ref|YP_003257599.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
 gi|261603506|gb|ACX85992.1| tRNA/rRNA methyltransferase (SpoU) [Pectobacterium wasabiae WPP163]
          Length = 154

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R A    C   +        E   L ++     +     R  N  D L  +   
Sbjct: 14  NTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDYHDLAKVSRHKNYQDFLAAI--P 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
           G +    ++   +P +Q        L+ G+E  GL    +    +     + M    ++L
Sbjct: 72  GQRIFACTTKGSRPYDQPTYQPGDVLLFGSETSGLPDAIRNGFESDFRIRIPMQSDSRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNA A+  Y     
Sbjct: 132 NLSNAVAIISYEAWRQ 147


>gi|146296318|ref|YP_001180089.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409894|gb|ABP66898.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 154

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R+         +        E   L ++     +++      +L
Sbjct: 5   IVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYKDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            D  +K           S+  K+   Q    D   L+ G E  GL     ++       +
Sbjct: 65  NDFFEKNRDAN--VFYFSTKGKQYYTQAPYTDNCYLMFGKETAGLPQWLIEQNIHKTYRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SNA A+ LY       
Sbjct: 123 PMISDVRSLNLSNAVAIVLYEALRQLG 149


>gi|15835441|ref|NP_297200.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
 gi|270289632|ref|ZP_06195934.1| spoU rRNA methylase family protein [Chlamydia muridarum Weiss]
 gi|301337018|ref|ZP_07225220.1| spoU rRNA methylase family protein [Chlamydia muridarum MopnTet14]
 gi|8163329|gb|AAF73607.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 151

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P N G I R+ VA   + I+            + ++     + +    + +L
Sbjct: 3   IVLHNPDIPQNTGNIGRTCVALGAELILVRPLGFSLADKFVKRAGMDYWDRLSLSVVDSL 62

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
            +AL      G    +   L++       E+E+  D    I GAE +GL     +  ++ 
Sbjct: 63  EEAL-----RGIPREKIFCLTTKGSSYYGERELPLDGT-YIFGAESRGLPQTVLDAYSSQ 116

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
             ++ M    ++LN++ +  + +Y     
Sbjct: 117 CLYIPMIEGTRSLNLATSVGIVMYEVARQ 145


>gi|156545324|ref|XP_001605709.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 458

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 22/201 (10%)

Query: 7   KKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQK-----------------SRHTSQPENL 49
           +K + + S K++   K     R  K+ ++   K                  +   + E +
Sbjct: 99  EKKKPVKSTKETKAYKAYEETRKRKESKTVLTKVHENEKIVSSIMMSLRSKKQRKKDELI 158

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            L GV  +  A+       +   +    +  LD+       F V     Q    +     
Sbjct: 159 LLEGVRFIEDAIKAGIVPQYIFFSRWEDIKHLDFSNTGTKLFKVTYRNIQLWSTLTTSPG 218

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           V     +       P      +  + ++ D+V DP N+G+ILR+A     + ++ TK   
Sbjct: 219 V-----MGIFKRPEPLKVKKSSLPITIICDNVRDPGNMGSILRAAAGVGVEKVVLTKGCV 273

Query: 170 PSESAVLAKSASGALEHIPYI 190
                 + +SA+GA   +P +
Sbjct: 274 DFWDTKVLRSATGAHFRVPIL 294



 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 219 PLEQEIKNDK-IALILGAEGKGLRPK----TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           P          + LI+G E +GL  +     ++      ++ +   I +LN   A  +  
Sbjct: 380 PYYAVDYTQNQVILIVGGETEGLSRESYELIEKKQGIRVNIPLDNGIDSLNAGMALGIIA 439

Query: 274 YITQNHFAK 282
           +  +  F +
Sbjct: 440 FEVKRQFLR 448


>gi|83591705|ref|YP_425457.1| tRNA/rRNA methyltransferase SpoU [Rhodospirillum rubrum ATCC 11170]
 gi|83574619|gb|ABC21170.1| tRNA/rRNA methyltransferase (SpoU) [Rhodospirillum rubrum ATCC
           11170]
          Length = 160

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 1/138 (0%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR       +  +        +   L ++    LE    +R S+ ++ +  + 
Sbjct: 12  PQNAGTILRLGACLGVEVDLIEPCGFVLDDRRLRRAGMDYLERAALVRHSSWSNFVSGLA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + I L++ +     + I      L+LG E  G+ P+  E A     + M   +++L
Sbjct: 72  DEA-RLILLTTQASAFHAETIFQPNDVLLLGRESAGVPPEVHERADLRIRVPMVPGVRSL 130

Query: 264 NVSNAAAVALYITQNHFA 281
           N++  AA+ L       A
Sbjct: 131 NIAVTAALVLGEALRQTA 148


>gi|147678560|ref|YP_001212775.1| rRNA methylase [Pelotomaculum thermopropionicum SI]
 gi|146274657|dbj|BAF60406.1| predicted rRNA methylase [Pelotomaculum thermopropionicum SI]
          Length = 152

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       +E   L ++       +  +   + 
Sbjct: 3   VVLVEPEIPANTGNIARTCAATGATLHLIKPLGFSTEDRYLKRAGLDYWNLVRVLYHDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +        G +    ++ +++   +        L+ G E KGL P+  +        +
Sbjct: 63  GEFAASYR--GCRFYLATTKARRLYTEVSYEPGSCLVFGKETKGLPPEILDGYPDGQIRV 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN++NA AV LY     
Sbjct: 121 PMIDGARSLNLANAVAVVLYEALRQ 145


>gi|227329687|ref|ZP_03833711.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 154

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R A    C   +        E   L ++     +     R  N  D L  +   
Sbjct: 14  NTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHKNYQDFLAAV--P 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
           G +    ++   +P +Q        L+ G+E  GL  + +    +     + M    ++L
Sbjct: 72  GKRIFACTTKGSRPYDQPTYQPDDVLLFGSETSGLPDEIRNGFESDFRIRIPMQSNNRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNA A+  Y     
Sbjct: 132 NLSNAVAIISYEAWRQ 147


>gi|227113255|ref|ZP_03826911.1| putative RNA-methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 154

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R A    C   +        E   L ++     +     R  N  D L  +   
Sbjct: 14  NTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHKNYQDFLAAV--P 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
           G +    ++   +P +Q        L+ G+E  GL  + +    +     + M    ++L
Sbjct: 72  GKRIFACTTKGSRPYDQPTYQPDDVLLFGSETSGLPDEIRNGFESDFRIRIPMQSNNRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNA A+  Y     
Sbjct: 132 NLSNAVAIISYEAWRQ 147


>gi|10439014|dbj|BAB15401.1| unnamed protein product [Homo sapiens]
 gi|31417389|gb|AAH09416.2| MRM1 protein [Homo sapiens]
 gi|48146831|emb|CAG33638.1| FLJ22578 [Homo sapiens]
          Length = 155

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGL-------SSDSKK----PLEQEIKNDKIALILGA 235
           +      +LT  LQ     G+   G           S +       + +      L+LG 
Sbjct: 1   MDVFSTDDLTGFLQTKAQQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGN 60

Query: 236 EGKGLRPKTQETATSMAHL-H---MPGIIKALNVSNAAAVALY 274
           EG GL  + Q +   +  +     +P  +++LNVS AA + L+
Sbjct: 61  EGSGLSQEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILLH 103


>gi|330797178|ref|XP_003286639.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum]
 gi|325083387|gb|EGC36841.1| hypothetical protein DICPUDRAFT_14626 [Dictyostelium purpureum]
          Length = 1558

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 78/197 (39%), Gaps = 9/197 (4%)

Query: 82   DWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV 141
            D + +    F  +  P Q I+K+   E  HQ     T    +      +   +++V   +
Sbjct: 1357 DDEDDEILDFQRRITPWQWINKL---EEHHQ--INNTNNSNNNNNKKNKRQSMIIVGTFI 1411

Query: 142  NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS--NLTDAL 199
             +  N+  ++R+   F+ + +               + +  A + +P I I+  NL D L
Sbjct: 1412 ENTPNLAGLIRTCEIFNVEEVAIPNLK-LLNDPQFQRVSVSAEKLVPIIEITKPNLLDYL 1470

Query: 200  QKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            +     G+  +G+   S  K L      +K  L+LG E  G+             +   G
Sbjct: 1471 KLKKKEGYSILGVEQTSQSKNLSSFQFPEKCLLLLGQEQNGIPANYLTIVDYCVEIPQLG 1530

Query: 259  IIKALNVSNAAAVALYI 275
             I++LNV  +A++ ++ 
Sbjct: 1531 QIRSLNVHVSASIVIWE 1547


>gi|30018734|ref|NP_830365.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
           14579]
 gi|30260705|ref|NP_843082.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|42779682|ref|NP_976929.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|47525820|ref|YP_017169.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|47567107|ref|ZP_00237823.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
 gi|49183542|ref|YP_026794.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|49476831|ref|YP_034807.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52144766|ref|YP_082062.1| RNA methyltransferase [Bacillus cereus E33L]
 gi|65317966|ref|ZP_00390925.1| COG0219: Predicted rRNA methylase (SpoU class) [Bacillus anthracis
           str. A2012]
 gi|75761277|ref|ZP_00741258.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118476236|ref|YP_893387.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|165871765|ref|ZP_02216409.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0488]
 gi|167635710|ref|ZP_02394021.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0442]
 gi|167640663|ref|ZP_02398924.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0193]
 gi|170708207|ref|ZP_02898653.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0389]
 gi|177653797|ref|ZP_02935898.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0174]
 gi|190568180|ref|ZP_03021089.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034754|ref|ZP_03102162.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
 gi|196041372|ref|ZP_03108666.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           NVH0597-99]
 gi|196046793|ref|ZP_03114015.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB108]
 gi|206967640|ref|ZP_03228596.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           AH1134]
 gi|206974260|ref|ZP_03235177.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           H3081.97]
 gi|217958083|ref|YP_002336627.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187]
 gi|218234183|ref|YP_002365344.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264]
 gi|218895602|ref|YP_002444013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842]
 gi|218901687|ref|YP_002449521.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820]
 gi|222094299|ref|YP_002528358.1| RNA methyltransferase, trmh family, group 2 [Bacillus cereus Q1]
 gi|225862525|ref|YP_002747903.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB102]
 gi|227816581|ref|YP_002816590.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. CDC 684]
 gi|228899231|ref|ZP_04063496.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|228906291|ref|ZP_04070176.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228913232|ref|ZP_04076870.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228919409|ref|ZP_04082776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228925735|ref|ZP_04088820.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931974|ref|ZP_04094867.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228937783|ref|ZP_04100414.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228944300|ref|ZP_04106674.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228951037|ref|ZP_04113157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228956964|ref|ZP_04118743.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228963633|ref|ZP_04124781.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228970664|ref|ZP_04131308.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977242|ref|ZP_04137639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228983751|ref|ZP_04143948.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229042401|ref|ZP_04190149.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|229068232|ref|ZP_04201537.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           F65185]
 gi|229077845|ref|ZP_04210466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock4-2]
 gi|229089609|ref|ZP_04220872.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-42]
 gi|229108153|ref|ZP_04237776.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-15]
 gi|229120143|ref|ZP_04249394.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           95/8201]
 gi|229125980|ref|ZP_04255004.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|229137350|ref|ZP_04265963.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|229143271|ref|ZP_04271702.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|229148885|ref|ZP_04277131.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|229154256|ref|ZP_04282376.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           4342]
 gi|229177075|ref|ZP_04304466.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           172560W]
 gi|229182880|ref|ZP_04310114.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
           6E1]
 gi|229188751|ref|ZP_04315788.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           10876]
 gi|229194862|ref|ZP_04321646.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|229601272|ref|YP_002865150.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0248]
 gi|254722176|ref|ZP_05183965.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A1055]
 gi|254738839|ref|ZP_05196542.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Western North America USA6153]
 gi|254743776|ref|ZP_05201460.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Kruger B]
 gi|254755063|ref|ZP_05207097.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Vollum]
 gi|254762203|ref|ZP_05214047.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Australia 94]
 gi|296501306|ref|YP_003663006.1| TrmH family RNA methyltransferase [Bacillus thuringiensis BMB171]
 gi|301052197|ref|YP_003790408.1| TrmA family RNA methyltransferase [Bacillus anthracis CI]
 gi|29894275|gb|AAP07566.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
 gi|30254073|gb|AAP24568.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Ames]
 gi|42735599|gb|AAS39537.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus ATCC
           10987]
 gi|47500968|gb|AAT29644.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47556163|gb|EAL14498.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9241]
 gi|49177469|gb|AAT52845.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. Sterne]
 gi|49328387|gb|AAT59033.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|51978235|gb|AAU19785.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus E33L]
 gi|74491236|gb|EAO54471.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118415461|gb|ABK83880.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
           str. Al Hakam]
 gi|164712490|gb|EDR18023.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0488]
 gi|167511378|gb|EDR86763.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0193]
 gi|167528969|gb|EDR91725.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0442]
 gi|170126863|gb|EDS95744.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0389]
 gi|172081189|gb|EDT66265.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0174]
 gi|190560672|gb|EDV14648.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           Tsiankovskii-I]
 gi|195992797|gb|EDX56757.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus W]
 gi|196022328|gb|EDX61013.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB108]
 gi|196027857|gb|EDX66470.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           NVH0597-99]
 gi|206736560|gb|EDZ53707.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           AH1134]
 gi|206747500|gb|EDZ58890.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           H3081.97]
 gi|217067511|gb|ACJ81761.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH187]
 gi|218162140|gb|ACK62132.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus B4264]
 gi|218535766|gb|ACK88164.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus AH820]
 gi|218542951|gb|ACK95345.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus G9842]
 gi|221238356|gb|ACM11066.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus Q1]
 gi|225786624|gb|ACO26841.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus
           03BB102]
 gi|227006301|gb|ACP16044.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. CDC 684]
 gi|228588618|gb|EEK46652.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1293]
 gi|228594728|gb|EEK52510.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           10876]
 gi|228600594|gb|EEK58180.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BGSC
           6E1]
 gi|228606397|gb|EEK63827.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           172560W]
 gi|228629080|gb|EEK85787.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus ATCC
           4342]
 gi|228634584|gb|EEK91167.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus m1550]
 gi|228640078|gb|EEK96477.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST24]
 gi|228646110|gb|EEL02331.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST26]
 gi|228657463|gb|EEL13277.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-Cer4]
 gi|228663184|gb|EEL18773.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           95/8201]
 gi|228675283|gb|EEL30504.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-15]
 gi|228693727|gb|EEL47427.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-42]
 gi|228705466|gb|EEL57831.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock4-2]
 gi|228714891|gb|EEL66761.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           F65185]
 gi|228726948|gb|EEL78157.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH676]
 gi|228775946|gb|EEM24315.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228782461|gb|EEM30642.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228789057|gb|EEM36992.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228796053|gb|EEM43513.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228802719|gb|EEM49557.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228808644|gb|EEM55143.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228815380|gb|EEM61627.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228821889|gb|EEM67886.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228827692|gb|EEM73433.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228833928|gb|EEM79480.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228840240|gb|EEM85514.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228846415|gb|EEM91429.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228853314|gb|EEM98086.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 200]
 gi|228860410|gb|EEN04805.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus thuringiensis
           IBL 4222]
 gi|229265680|gb|ACQ47317.1| RNA methyltransferase, TrmH family, group 2 [Bacillus anthracis
           str. A0248]
 gi|296322358|gb|ADH05286.1| RNA methyltransferase, TrmH family,group 2 [Bacillus thuringiensis
           BMB171]
 gi|300374366|gb|ADK03270.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cereus biovar
           anthracis str. CI]
 gi|324324583|gb|ADY19843.1| TrmA family RNA methyltransferase [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326938265|gb|AEA14161.1| RNA methyltransferase, TrmH family, group 2 [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 162

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +       ++  +L ++     +H+      ++
Sbjct: 5   VVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQE-TATSM 251
            +  +K     F    L+   +K       + +      + G E  GL     E      
Sbjct: 65  EEFYEKNKDGEF--FYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFDHC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 123 LRIPMTDKVRSLNLSNTAAILIYEAFRQ 150


>gi|310640993|ref|YP_003945751.1| RNA methyltransferase, trmh family, group 2 [Paenibacillus polymyxa
           SC2]
 gi|309245943|gb|ADO55510.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus polymyxa
           SC2]
          Length = 154

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +       ++ A L ++       +     
Sbjct: 2   PLHIVLVEPEIPANTGNIARTCAATGTHLHLVKPLGFRTDDATLKRAGLDYWYAVHIEYH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
            +  + +Q+ +  G      +  +K+        D   L+ G E KGL P+       + 
Sbjct: 62  ESFAE-VQEKYQAGRFFYATT-KAKQQYSDIKFQDGDFLVFGKETKGLPPELLAANPDTC 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M   +++LN+SN+AA+ +Y      
Sbjct: 120 IKMPMSDKVRSLNLSNSAAIIVYEALRQL 148


>gi|229009971|ref|ZP_04167188.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
           2048]
 gi|229022085|ref|ZP_04178639.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1272]
 gi|229028341|ref|ZP_04184470.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1271]
 gi|229056322|ref|ZP_04195740.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|229095197|ref|ZP_04226189.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-29]
 gi|229101299|ref|ZP_04232047.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-28]
 gi|229114145|ref|ZP_04243566.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-3]
 gi|229159633|ref|ZP_04287645.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           R309803]
 gi|229165485|ref|ZP_04293267.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|229171329|ref|ZP_04298916.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228612148|gb|EEK69383.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus MM3]
 gi|228617990|gb|EEK75033.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH621]
 gi|228623837|gb|EEK80651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           R309803]
 gi|228669165|gb|EEL24586.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock1-3]
 gi|228682123|gb|EEL36252.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-28]
 gi|228688056|gb|EEL41942.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-29]
 gi|228720990|gb|EEL72532.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus AH603]
 gi|228732971|gb|EEL83824.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1271]
 gi|228739237|gb|EEL89679.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           AH1272]
 gi|228751309|gb|EEM01118.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides DSM
           2048]
          Length = 162

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +       ++  +L ++     +H+      ++
Sbjct: 5   VVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQE-TATSM 251
            +  +K     F    L+   +K       + +      + G E  GL     E      
Sbjct: 65  EEFYEKNKDGEF--FYLTKYGEKAHTAFDYSKREKDYYFVFGRETNGLPANVIEENFDHC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 123 LRIPMTDKVRSLNLSNTAAILIYEAFRQ 150


>gi|254412961|ref|ZP_05026733.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
 gi|196180125|gb|EDX75117.1| RNA methyltransferase, TrmH family [Microcoleus chthonoplastes PCC
           7420]
          Length = 153

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 1/149 (0%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G + R+  A   +  +            L ++      ++ +    
Sbjct: 2   LRVVLVCPQIPPNTGNVARTCAATDTELHLVGPLGFEISDRYLKRAGLDYWPYVKFHYHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            L    Q     G + IG S+  +    Q        L  G+E +GL P       +   
Sbjct: 62  TLEAFNQVSQKLGGRWIGFSTSGQYSYVQFQFQPNDWLFFGSETQGLSPSVLTRCGATVV 121

Query: 254 LHM-PGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++LN+S +AA+ L+  +    
Sbjct: 122 IPMTQPGVRSLNLSVSAALGLFEARRQLG 150


>gi|293374181|ref|ZP_06620512.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter
           sanguinis PC909]
 gi|325845359|ref|ZP_08168659.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1]
 gi|292647210|gb|EFF65189.1| putative RNA methyltransferase, TrmH family, group 2 [Turicibacter
           sanguinis PC909]
 gi|325488613|gb|EGC91022.1| RNA methyltransferase, TrmH family, group 2 [Turicibacter sp. HGF1]
          Length = 173

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R+  A      +        +   + ++ +  +  + Y+   N  + ++   
Sbjct: 13  PQNTGNIMRTCAATDIKLHLIKPMGFTLDEKSIKRAGANYVNEVDYVVYENWDEFVE--K 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ----ETATSMAHLHM 256
           + G +    +   +K   +   ++      ++LGAE  G+  +      E       + M
Sbjct: 71  NKGGKFCFCTRYGQKNHTEMDFSNPEEDYYIVLGAESCGIPKEILRPYFENC---FRIPM 127

Query: 257 PGIIKALNVSNAAAVALYITQNH 279
              +++LNVSN AA+  Y     
Sbjct: 128 TNKVRSLNVSNVAAILAYEALRQ 150


>gi|89898732|ref|YP_515842.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89332104|dbj|BAE81697.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 156

 Score = 83.9 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P N G I R+ VA   + I+            + ++     + +    + +L
Sbjct: 3   VVLYNPDIPQNTGNIGRTCVALGAELILVRPLGFSLLDKFVKRAGMDYWDKVNPSVVDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +AL  +     +   LS+   +             + G+E KGL  +  +       +L
Sbjct: 63  DEALSGIDEN--KVFCLSTKGSQCYGDVSLPMDGVYVFGSESKGLPEEVLKKYYNHCYYL 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   +++LN++    V L+     
Sbjct: 121 PMKPGVRSLNLATTVGVVLFEAVRQ 145


>gi|125972651|ref|YP_001036561.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|256004738|ref|ZP_05429714.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 2360]
 gi|281416843|ref|ZP_06247863.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum JW20]
 gi|125712876|gb|ABN51368.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum ATCC 27405]
 gi|255991331|gb|EEU01437.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 2360]
 gi|281408245|gb|EFB38503.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum JW20]
 gi|316941111|gb|ADU75145.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           thermocellum DSM 1313]
          Length = 164

 Score = 83.9 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +        E   L ++     + +      + 
Sbjct: 5   VVLVEPEIPQNTGNIARTCAAVGANLHLVKPLGFSVEDRYLKRAGLDYWDKVNIKYYDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
           ++   K     F     ++ ++K        D   ++ G E  GL  +   E       +
Sbjct: 65  SELRDKYKEHIF--YYSTTKAQKLYTDVKYPDDCFIVFGKETAGLPEELLVENKEWCIRI 122

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M   I++LN+SN+ A+ +Y    QN+FA
Sbjct: 123 PMRDDIRSLNLSNSVAIIVYEALRQNNFA 151


>gi|113474137|ref|YP_720198.1| tRNA/rRNA methyltransferase SpoU [Trichodesmium erythraeum IMS101]
 gi|110165185|gb|ABG49725.1| tRNA/rRNA methyltransferase (SpoU) [Trichodesmium erythraeum
           IMS101]
          Length = 153

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G + R+  A   +  +            L ++      ++     ++ 
Sbjct: 4   IVLVYPQIPQNTGNVARTCAATKTELHLVGPLGFEISDRYLKRAGLDYWPYVKLNYHNDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            +     H  G + IG S   K    +        L+ G+E  GL        ++  ++ 
Sbjct: 64  AEFKVYHHKLGGRLIGFSKMGKLNYTKFQYQTNDWLLFGSETNGLPKDVLNYCSATLYIP 123

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S +AA+ L+  +    
Sbjct: 124 MTQPNVRSLNLSVSAALGLFEARRQLG 150


>gi|209886113|ref|YP_002289970.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5]
 gi|209874309|gb|ACI94105.1| tRNA/rRNA methyltransferase [Oligotropha carboxidovorans OM5]
          Length = 158

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 49/136 (36%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR       +  I      P       ++    L+ +   R  +         
Sbjct: 11  PQNTGTILRLCACLEVEAHIIEPAGFPVSDRHFRRAGMDYLDRVSISRHVSWNAFRVWRE 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + +  ++ +          D   L+ G E  G+  +  E+A     + +   +++L
Sbjct: 71  ADGGRLVLFTTKAATSYLAHRYEDTDILLFGRESAGVPDEVAESADQRLLIPIAEGMRSL 130

Query: 264 NVSNAAAVALYITQNH 279
           N++ +AA+AL      
Sbjct: 131 NIAVSAAMALGEALRQ 146


>gi|327539925|gb|EGF26526.1| S-adenosyl-L-methionine dependent tRNA/rRNA methyltransferase,
           SpoU, predicted [Rhodopirellula baltica WH47]
          Length = 156

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                +VL     P N G I R+ VA      I        +   L ++     +++ + 
Sbjct: 2   QPPAHVVLYQPEIPQNTGNIGRTCVAVGAKLWIVEPASFQFDEKRLRRAGLDYWQYLDWE 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT- 249
            + +     ++++   F     S  +K+ + +        L+ G E  GL     +    
Sbjct: 62  PVPSWDVLCERLNPERFFFF--SKSAKRTVWEAEFALGDVLVFGRETSGLPASILKPDDP 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M   +++LN+S  A +ALY  Q  
Sbjct: 120 RSLRLPMREQVRSLNLSVTAGIALYEHQRQ 149


>gi|153810968|ref|ZP_01963636.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174]
 gi|149832856|gb|EDM87939.1| hypothetical protein RUMOBE_01359 [Ruminococcus obeum ATCC 29174]
          Length = 166

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L +VL     P N G I R+ VA      +            L ++     + +    
Sbjct: 2   AKLNIVLLEPEIPANTGNIGRTCVATDTKLHLIEPLGFSLSEKALKRAGMDYWKDLDVTT 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             +  D L+   +   +    ++ + K        +   ++ G E  G+  +   E   +
Sbjct: 62  YLDYEDFLE--KNPNAKIYYATTKALKTYTDVQYEEDCYIMFGKESAGIPEEILMEHKDN 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
              + M   I++LN+SN+ A+ LY    QNHF
Sbjct: 120 CVRIPMINEIRSLNLSNSVAIVLYEALRQNHF 151


>gi|262376672|ref|ZP_06069900.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262308382|gb|EEY89517.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 158

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E+       N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEYANMQIWENI 63

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            D L  + S G        L++   +       N  +AL++G E +GL    +       
Sbjct: 64  EDCLADLASKGIGLDAIYPLTTKGSETPHTSDLNRPVALLMGPETRGLPEHVRLMFPQKH 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV +Y     
Sbjct: 124 WIRLPMAENSRSLNLSNATAVIVYEAWRQ 152


>gi|29839847|ref|NP_828953.1| RNA methyltransferase [Chlamydophila caviae GPIC]
 gi|666878|gb|AAB41347.1| spoU [Chlamydophila caviae]
 gi|29834194|gb|AAP04831.1| RNA methyltransferase, TrmH family [Chlamydophila caviae GPIC]
          Length = 156

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P N G I R+ +A   + I+            + ++     + +    + +L
Sbjct: 3   VVLYNPDIPQNTGNIGRTCIALGAELILVRPLGFSLLDKFVKRAGMDYWDKVNLSVVDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +AL  +     +   LS+   +             + G+E KGL     +       +L
Sbjct: 63  DEALSGVDQN--KVFCLSTKGSQYYGDVSLPMDGVYVFGSESKGLPEDVLKKYYNHCYYL 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN++    V L+     
Sbjct: 121 PMRPGIRSLNLATTVGVVLFEAVRQ 145


>gi|254430609|ref|ZP_05044312.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
 gi|197625062|gb|EDY37621.1| RNA methyltransferase TrmH, group 2 [Cyanobium sp. PCC 7001]
          Length = 155

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 7/150 (4%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L     P N G + R+  A + +  +            L ++      ++P    ++  
Sbjct: 1   MLYQPQIPPNTGNVARTCAATAQELHLVGPLGFEISDRTLRRAGLDYWPYVPLTLHADWP 60

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
                    G + + LS+    P           L+ G E  GL  +  + A ++  + M
Sbjct: 61  AFTGVQGRQGGRLVALSAHGITPYTAFRFQPDDWLLFGRESDGLPAEPLQRADAVLTIPM 120

Query: 257 P-------GIIKALNVSNAAAVALYITQNH 279
                   G +++LN+S A  V L+     
Sbjct: 121 RRSRHHPEGGVRSLNLSVAVGVVLFEALRQ 150


>gi|296282195|ref|ZP_06860193.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 134

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSD----SKKPLEQEIKND--KIALILGAEG 237
           ++     R     D    +      +I  S      +   L +    +  K+A+  G E 
Sbjct: 1   MKWSFVKRFDTTDDCFDHLEKNNVHSIVTSPHMKGQNNVWLHEGDFTEHTKLAVWFGNEK 60

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +G+  +  E + +   + M G+I++LN++ ++ + LY      
Sbjct: 61  RGISDRAVERSEACVAIPMFGMIESLNLATSSGIVLYEVTKQR 103


>gi|330444101|ref|YP_004377087.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
 gi|328807211|gb|AEB41384.1| spoU rRNA methylase family protein [Chlamydophila pecorum E58]
          Length = 152

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 3/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+ VA   + I+            + ++     E +    + +L +ALQ   
Sbjct: 11  PQNTGNIGRTCVALGAELILVRPLGFSLLDKFVKRAGMDYWEKLKLRVVDSLEEALQDTE 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH-LHMPGIIKA 262
               Q   LS+  KK         K   + G+E KGL  +         + + M    ++
Sbjct: 71  KK--QLFFLSTKGKKYYAHASLPLKGTFVFGSESKGLPQEVLNAYHEQCYFVPMLQGTRS 128

Query: 263 LNVSNAAAVALYITQNH 279
           LN++    + LY     
Sbjct: 129 LNLATTVGIVLYEVIRQ 145


>gi|87199225|ref|YP_496482.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134906|gb|ABD25648.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 151

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 51/135 (37%), Gaps = 2/135 (1%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA++R       +  +        E   + ++A   ++H+   R +        +  
Sbjct: 12  GNVGAVMRLGACLGVNVDLVEPMGFAWEDRRVRRAAMDYIDHVKVTRHAGFGPFRASV-- 69

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              + +  ++ +++ L          L+ G E  G+  +  +       + +   +++LN
Sbjct: 70  APGRLVLFTTKAEQSLHDFRFRADDVLLFGKESAGVPDEVAQACDERVRIPIRPEVRSLN 129

Query: 265 VSNAAAVALYITQNH 279
           ++ A A+AL      
Sbjct: 130 LAIATALALGEALRQ 144


>gi|289668560|ref|ZP_06489635.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 180

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQT 100
           +S    + LYG++ V A        + +L  ++  + +        +      + V    
Sbjct: 48  SSNAREVRLYGINAVQAVFKARPEALRKLYLSEARIPQFKALLAWCVTQRIGYRVVEEAD 107

Query: 101 IDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQ-LLMVLDHVNDPHNIGAILRSAV 155
           + K+    A H+G+  E   +    L   L A+     L + LD V +PHN GA+LRS+ 
Sbjct: 108 LGKLAAS-AHHEGIVAEVLRVTPQSLQEWLAALPQGPVLALWLDGVGNPHNFGAMLRSSA 166

Query: 156 AFSCDGIITT 165
            F   G++  
Sbjct: 167 HFGVAGLLLP 176


>gi|115450091|ref|NP_001048646.1| Os03g0100500 [Oryza sativa Japonica Group]
 gi|113547117|dbj|BAF10560.1| Os03g0100500 [Oryza sativa Japonica Group]
          Length = 220

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
             QL++V   V+   N+  + R+   F   G+    + S  E       +  A + +P  
Sbjct: 65  QQQLIVVASLVDRIPNLAGLTRTCEIFKAVGLAVADK-SIIEDKQFRLISVTAEKWLPMM 123

Query: 190 -IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            + ++++   L+K    G+  IGL   +  KPL+      K  L+LG E +G+       
Sbjct: 124 EVPVNSVKVFLEKKRLEGYSVIGLEQTANSKPLDHFSFPSKTVLVLGREKEGIPVDIIHV 183

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
             +   +   GI+++LNV  + A+A++    Q   A
Sbjct: 184 LDACVEIPQLGIVRSLNVHVSGAIAVWEYTRQQRIA 219


>gi|297627066|ref|YP_003688829.1| tRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922831|emb|CBL57409.1| TRNA/rRNA methyltransferase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 258

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG+I+R+  AF+  G+    R+         + A     ++      ++   +      
Sbjct: 99  NIGSIVRTGNAFNVSGVHILGRH-----RWNRRGAMVTDRYLHVHHQPDVASLVSYCAEH 153

Query: 206 GFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
               +G+        LE      +  L+ G+EG+GL  +       +  +   G  +++N
Sbjct: 154 ELTMVGVDNLPGAVRLETTELPLRCCLVFGSEGQGLTDELAAACERLVAITQYGSTRSMN 213


>gi|302757075|ref|XP_002961961.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii]
 gi|302775416|ref|XP_002971125.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii]
 gi|300161107|gb|EFJ27723.1| hypothetical protein SELMODRAFT_95047 [Selaginella moellendorffii]
 gi|300170620|gb|EFJ37221.1| hypothetical protein SELMODRAFT_77385 [Selaginella moellendorffii]
          Length = 186

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 5/152 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++V   V    N+  + R+   F    +    +    E       +  A + +P + +
Sbjct: 30  DLIVVASLVERIPNLAGLARTCEVFKASALTVADKK-ILEDRQFKLISVTAEQWVPILEV 88

Query: 193 SN--LTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               L   L++M   G+  +GL   +    +       ++ L+LG E  G+     +T  
Sbjct: 89  KEGALIRYLERMKDEGYAVLGLEQTANSVAVNNYSFPSRVVLVLGREKDGIPVNLIQTLD 148

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
           +   +   G+I++LNV  + A+A++  T+ H 
Sbjct: 149 ACLEIPQLGMIRSLNVHVSGAIAVWEYTKQHL 180


>gi|300024035|ref|YP_003756646.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525856|gb|ADJ24325.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 158

 Score = 83.5 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-----AL 199
            N G ILR          +            L +SA   L+H+   R  + ++     AL
Sbjct: 12  QNTGTILRLCACLGVPVDVIGPTGFDMSDRALKRSALDYLDHVDLKRHISFSEFMDRRAL 71

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
            +  + G + I LS+ ++ P           L+LG E  G        A +   + M   
Sbjct: 72  SERRADGGRLILLSAHAETPHIHFAFEPNDILMLGRESAGCPESVHAQADARITIPMRPG 131

Query: 260 IKALNVSNAAAVALYITQNH 279
           +++LNV+  AA+ L      
Sbjct: 132 LRSLNVAVTAAIVLGEALRQ 151


>gi|239942624|ref|ZP_04694561.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239989083|ref|ZP_04709747.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           11379]
          Length = 233

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD +R     + +++     NIG+++R+A AF    I    R          
Sbjct: 66  TREAIVADLD-LRRHDFHVAVENWTHDFNIGSVVRTANAFLAKEIHIVGRR-----RWNR 119

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +      S+  D      + G   IG+       PLE+     +  L+ G E
Sbjct: 120 RGAMVTDRYQHVRHHSDTADLTAWATAEGLPIIGIDNLPGAVPLERTELPRRCVLLFGQE 179

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G GL  + +E AT++  +   G  +++N
Sbjct: 180 GPGLTEEAREHATAVCSIAQFGSTRSIN 207


>gi|302384793|ref|YP_003820615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
 gi|302195421|gb|ADL02992.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium saccharolyticum
           WM1]
          Length = 164

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           ++ ++     + +     S+ 
Sbjct: 3   IVLLEPEMPANTGNIGRTCVATGTKLHLIEPLGFKLNDKLIKRAGLDYWDKLDVNVYSDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L    + G +    ++           +    L+ G E  G+  +   E       +
Sbjct: 63  QDFLD--RNPGARIYMATTKGLHVYSDVEYDPDCFLMFGKESAGIPEEILLENQDCCVRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+SN+ ++ LY     
Sbjct: 121 PMWGDIRSLNLSNSVSIVLYEALRQ 145


>gi|302383789|ref|YP_003819612.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194417|gb|ADL01989.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 167

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 4/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA +R +  F  +  I        +   + ++   AL++ P   ++   D      
Sbjct: 32  PQNVGACIRLSACFGVELHIIEPTGFQFDDRAMKRA---ALDYGPLAHMTRHPDWAAFQA 88

Query: 204 SWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
           + G  + I  ++    PL   +      L+ G+E  G        A +   + +    ++
Sbjct: 89  ARGSGRLILFTTKGAAPLTDFVFQPDDTLLFGSETAGAPEHVHAAADARVFIPIRPDARS 148

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+S +A + L+      A
Sbjct: 149 LNLSVSAGIGLFEALRQTA 167


>gi|294899352|ref|XP_002776605.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983]
 gi|239883647|gb|EER08421.1| rRNA methylase, putative [Perkinsus marinus ATCC 50983]
          Length = 211

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 19/148 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +++ +V    N G +LRSA AF    +         E A+                   +
Sbjct: 17  LLICNVGKRQNWGQLLRSATAFGVTEVFVVGAKKMKELALFGN-------------QDTI 63

Query: 196 TDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            +  +++   G    G+    S +P++          +LG EG G+  K         ++
Sbjct: 64  AEVKEELKRRGITLCGVEIHPSSEPIQDMHWRGDTCFMLGNEGTGMTDKQIAACDQFTYI 123

Query: 255 HMPGIIK-ALNVSNAAAVALYITQNHFA 281
                   +LNV+ A ++      +HFA
Sbjct: 124 QQYTKATASLNVAIAGSIV----SHHFA 147


>gi|145507310|ref|XP_001439610.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406805|emb|CAK72213.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1396

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 74/192 (38%), Gaps = 7/192 (3%)

Query: 94   KTVPPQTIDKIVGKEAVHQ---GLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAI 150
            + V  Q +     ++   Q    L ++   L            +++V   +    N G +
Sbjct: 1204 QYVERQQLSTQYSQQLNFQRKINLIMDQFDLFKAYQPRQIVGDIIVVATLLEKIPNFGHL 1263

Query: 151  LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDALQKMHSWGFQ 208
             R+   F C  ++   +    +       +  A +H+P   I+  +L + LQ     G+Q
Sbjct: 1264 TRTCEIFGCRELVLPNKK-ILQDEQYQAVSVSAEQHLPILEIKEDHLMNYLQLKRLQGYQ 1322

Query: 209  TIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
             + L   S  K +     + K  L+LG E  GL  +  E   +   +   G+I++LNV  
Sbjct: 1323 LVALEQTSQSKSIVNFKFDKKTVLVLGREKTGLPIEYIELMDNCVEIPQYGVIRSLNVHI 1382

Query: 268  AAAVALYITQNH 279
            +A + ++     
Sbjct: 1383 SAVICVWQYVQQ 1394


>gi|87312115|ref|ZP_01094220.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM
           3645]
 gi|87285143|gb|EAQ77072.1| spoU rRNA Methylase family protein [Blastopirellula marina DSM
           3645]
          Length = 168

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     +H+ +  + + 
Sbjct: 9   IVLHEPEIPPNTGNIGRTCVAIGAKLWLVKPLGFLVNDRELKRAGMDYWQHLEWEVVEDW 68

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
               +++    F    L+  +K+         + A++LGAE KGL P+   T       +
Sbjct: 69  AHLQERLKDRRF--FYLTKTAKRSYTTVDFQLEDAIVLGAESKGLPPELLATTPENNISV 126

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M   +++LN+S  AA   Y      
Sbjct: 127 PMRTEVRSLNLSATAATVAYEAVRQL 152


>gi|320009792|gb|ADW04642.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces flavogriseus ATCC
           33331]
          Length = 236

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD  R     + +++     NIG+++R+A AF    I    R          
Sbjct: 70  TREAIVADLDT-RRHDFHVAVENWGHDFNIGSVVRTANAFLAKEIHIVGRR-----RWNR 123

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +       +  D      + GF  IG+       PLE+     +  L+ G E
Sbjct: 124 RGAMVTDRYQHVRHHPDTADLTAWAAAEGFPIIGIDNLPGAVPLERTELPRRCVLLFGQE 183

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G GL  + +E A+ +  +   G  +++N
Sbjct: 184 GPGLTEEAREHASMVCSIAQFGSTRSIN 211


>gi|332974393|gb|EGK11319.1| rRNA methylase [Psychrobacter sp. 1501(2011)]
          Length = 159

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD----SKKPLEQEIKNDK- 228
             L K +  A++       S+  + L  +  + + +I  S      +   L+      K 
Sbjct: 26  KSLLKPSVSAIKWTFVKVFSSTEECLDHLEKYRYTSIVTSPHIKGQNNVLLQDGDYTQKR 85

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +A+  G E +G+     + + +   + M G+I++LN++ +  + LY      
Sbjct: 86  LAVWFGNESRGISEIAIKRSEACVQIEMAGMIESLNLATSTGIVLYEVTKQR 137


>gi|322488285|emb|CBZ23531.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 545

 Score = 83.2 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 90/268 (33%), Gaps = 77/268 (28%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                +  +++ ++    R           PV+ VP   + ++ G+    Q + LE +  
Sbjct: 163 RGRHLRKKKVIPSRYTAVRCITALAKSLNVPVRFVPRAELVQLCGERRN-QNIVLEASSY 221

Query: 122 LSPTLDAVRN------------------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
               +  +                       ++ L+ + DP NIG ILR+A  F  D +I
Sbjct: 222 KPQRIRHLGEIWGAEGAAATTTDAASAGPVTVLFLERIVDPANIGGILRTAFFFGVDHVI 281

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHS----------------WG 206
            +++ + S +A ++++++G LEH+   +  ++    L+                     G
Sbjct: 282 LSRQCA-SCTAAVSRTSTGFLEHLRVYQASTSSAAFLRASQQVWASAAPPSSSSITGASG 340

Query: 207 FQTIGL-----------------------SSDSKKPLEQEI----------------KND 227
            + I                         +SD   P E  +                   
Sbjct: 341 LEVIASTVVSHTKAQRHDPNESAPALQSPASDESAPSEVSVESSSDYVRVCAQQPSSYPP 400

Query: 228 KI-ALILGAEGKGLRPKTQETATSMAHL 254
            +  L+LG E  GL P   +  T +AH+
Sbjct: 401 PVRVLLLGNEDAGLPPDLLQWCTHVAHI 428


>gi|291446085|ref|ZP_06585475.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291349032|gb|EFE75936.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 222

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD +R     + +++     NIG+++R+A AF    I    R          
Sbjct: 55  TREAIVADLD-LRRHDFHVAVENWTHDFNIGSVVRTANAFLAKEIHIVGRR-----RWNR 108

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +      S+  D      + G   IG+       PLE+     +  L+ G E
Sbjct: 109 RGAMVTDRYQHVRHHSDTADLTAWATAEGLPIIGIDNLPGAVPLERTELPRRCVLLFGQE 168

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G GL  + +E AT++  +   G  +++N
Sbjct: 169 GPGLTEEAREHATAVCSIAQFGSTRSIN 196


>gi|329942398|ref|ZP_08291208.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10]
 gi|332287039|ref|YP_004421940.1| rRNA methylase [Chlamydophila psittaci 6BC]
 gi|313847636|emb|CBY16624.1| putative rRNA methylase [Chlamydophila psittaci RD1]
 gi|325506473|gb|ADZ18111.1| rRNA methylase [Chlamydophila psittaci 6BC]
 gi|328815308|gb|EGF85296.1| spoU rRNA Methylase family protein [Chlamydophila psittaci Cal10]
 gi|328914271|gb|AEB55104.1| spoU [Chlamydophila psittaci 6BC]
          Length = 156

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P N G I R+ +A   + I+            + ++     + +    + +L
Sbjct: 3   VVLYQPDIPQNTGNIGRTCIALGAELILVRPLGFSLLDKFVKRAGMDYWDKVNLSVVDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + L  +     +   LS+   +             + G+E KGL  +  +       +L
Sbjct: 63  DEVLSGVDED--KVFCLSTKGTQYYGDVFLPMDGVYVFGSESKGLPEEVLKKYHNHTYYL 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN++    V L+     
Sbjct: 121 PMKPGIRSLNLATTVGVVLFEAVRQ 145


>gi|218439056|ref|YP_002377385.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
 gi|218171784|gb|ACK70517.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 7424]
          Length = 153

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R+  A + +  +            L ++       +      NL
Sbjct: 4   LVLVHPQIPPNTGNIARTCAATATELHLVGPLGFEISDRYLKRAGLDYWPLVNLSYHPNL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               Q     G + IG S   ++   +        L+ G+E  GL      +  +  ++ 
Sbjct: 64  EIFEQVHQKIGGRKIGFSVSGQENFLKFQFEVGDWLLFGSETDGLPANVLASCDATVYIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + AV L+  +    
Sbjct: 124 MAQPKVRSLNLSVSVAVGLFEAKRQLG 150


>gi|307719616|ref|YP_003875148.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
           6192]
 gi|306533341|gb|ADN02875.1| hypothetical protein STHERM_c19400 [Spirochaeta thermophila DSM
           6192]
          Length = 154

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 3/144 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +        E   L ++       +     S+ 
Sbjct: 5   VVLHEPEIPQNTGNIARTCAATGAILHLIEPLGFSLEDRYLRRAGLDYWPMVDLRVHSSW 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
              L++          LS+   +P       D+  L+ G E  GL  +  E     +  +
Sbjct: 65  EAFLEEERPSSLFL--LSTRGTRPYHVCEFPDETYLVFGKETAGLPARILEAFPDRVVRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            M    ++LN+SNA A+ +Y    
Sbjct: 123 PMREGARSLNLSNAVAILVYAALR 146


>gi|166031366|ref|ZP_02234195.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC
           27755]
 gi|166028771|gb|EDR47528.1| hypothetical protein DORFOR_01055 [Dorea formicigenerans ATCC
           27755]
          Length = 170

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +        +   L ++       +      + 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLDEKNLKRAGMDYWGSLDVTTYIDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+   + G +    ++ + K   +        ++ G E  G+  +   +       +
Sbjct: 64  ADFLE--RNPGAKIYMATTKAPKVYTEVSYEPDCYIMFGKESAGIPEEILVQHQEDCVRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M G I++LN+SN+ ++ LY    QN FA
Sbjct: 122 PMVGDIRSLNLSNSVSIVLYEALRQNGFA 150


>gi|218528712|ref|YP_002419528.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
 gi|218521015|gb|ACK81600.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium
           chloromethanicum CM4]
          Length = 149

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 46/138 (33%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR +        I            L +S    L+H+   R  +         
Sbjct: 12  PQNTGTMLRMSACLGIAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWDAFEAWRR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + +  ++    P  Q    D   L++G E  G+       A +   + +   +++L
Sbjct: 72  ETDIRLVLATTTGSVPYTQHAFRDGDCLLMGRESAGVPEAVHAAADARVVVPIRPGLRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+  AA+ L        
Sbjct: 132 NVAICAAMMLGEAIRQVG 149


>gi|297623001|ref|YP_003704435.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
 gi|297164181|gb|ADI13892.1| tRNA/rRNA methyltransferase (SpoU) [Truepera radiovictrix DSM
           17093]
          Length = 157

 Score = 82.8 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 5/140 (3%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH- 203
            N+G I R+         +          A + ++     E +   + ++          
Sbjct: 13  GNVGNIARTCAVVGAPLHLIRPYGFRLSDAAVRRAGMDYWEAVQLTQHASFAQFEAHFAR 72

Query: 204 --SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
               G +    ++ +     +        L+ G E +GL    +  A S   + M G  +
Sbjct: 73  AFEAG-RVFAFTTKATVGYSEVRYRPGDVLLFGPESRGLPEAVRALA-SPVRIPMQGGAR 130

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN++ +  V LY       
Sbjct: 131 SLNLAVSVGVGLYEAWRQLG 150


>gi|152974303|ref|YP_001373820.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023055|gb|ABS20825.1| RNA methyltransferase, TrmH family, group 2 [Bacillus cytotoxicus
           NVH 391-98]
          Length = 162

 Score = 82.8 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++  +L ++     EH+      ++
Sbjct: 5   VVLYQPEIPANTGNIARTCAATGAGLHLIRPLGFSTDDKMLKRAGLDYWEHVKITYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ-ETATSM 251
            +  +K     F    L+   +K       ++       + G E  GL      E     
Sbjct: 65  EEFYEKNQDGEF--FYLTKYGEKAHTAFDYSNPEKNYYFVFGRETNGLPANIIQENFDHC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 123 LRIPMTDKVRSLNLSNTAAILVYEAFRQ 150


>gi|319898485|ref|YP_004158578.1| RNA methyltransferase [Bartonella clarridgeiae 73]
 gi|319402449|emb|CBI75990.1| RNA methyltransferase [Bartonella clarridgeiae 73]
          Length = 158

 Score = 82.8 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR +  F     I            L ++    LE     R  +  + +  M  
Sbjct: 14  GNTGTILRLSACFGLHVHIIEPAGFDLSDRNLKRAGMDYLERASLERHLDWQNFIDTMQR 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  + + LS+ +K    +        L+ G E  G+     + A     + M    ++LN
Sbjct: 74  FNHRLLLLSTKAKTCYTEIRYQKNDVLLFGRESAGVPDYVYKAADYALTIPMLPHARSLN 133

Query: 265 VSNAAAV 271
           ++ + A+
Sbjct: 134 LAMSVAI 140


>gi|312216567|emb|CBX96517.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1292

 Score = 82.8 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 31/183 (16%)

Query: 119  APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
             P  SP     R + +++V   +++P N+G + R + +F  + +               K
Sbjct: 1106 PPPDSPFTKYRRPASVILVASLIDNPTNLGGLSRISESFGLEALYI-----DDLKKTAHK 1160

Query: 179  ----SASGALEHIPYI--RISNLTDALQKMHSWGFQTIGL---------------SSDSK 217
                ++  + +H P    +IS++   L +    G+  +G+                +   
Sbjct: 1161 DFKATSVTSEKHFPIHALKISDVPQFLIETKRKGYVVVGVEQTDRSGILGEGEDVDAHGG 1220

Query: 218  KPLEQE-----IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
                +          K  ++LG+E  G+ P+          +   G+ ++LNV  A  +A
Sbjct: 1221 AASTRWGKSIGTLPKKCVVVLGSEKGGITPEVLTVIDRCVEIKTVGVTRSLNVQTAGGIA 1280

Query: 273  LYI 275
            LY 
Sbjct: 1281 LYE 1283


>gi|226365015|ref|YP_002782798.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226243505|dbj|BAH53853.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 230

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG ++R+A AF+   +    R          + A     +   
Sbjct: 77  RRHPLHVAIENFGHDANIGTVVRTANAFAAAAVHIVGRR-----RWNRRGAMVTDRYQHV 131

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +   ++   +          + +  +    PLE         L+ G EG G+  + +  A
Sbjct: 132 LHHPDVDGLVDFARERDLTIVAVDNTPGSVPLETANLPRDCVLLFGQEGPGVTDQAKGVA 191

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 192 AMTVSIAQFGSTRSINAGVAAGIAMHAWVRQH 223


>gi|325673864|ref|ZP_08153554.1| TrmH family RNA methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325555129|gb|EGD24801.1| TrmH family RNA methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 233

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG ++R+A AF+   +    R          + A     +   
Sbjct: 80  RRHPLHVAIENFAHDSNIGTVVRTANAFAAAAVHIVGRR-----RWNRRGAMVTDRYQHL 134

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  ++L +        G   + +  +    P+E         L+ G EG G+  +    A
Sbjct: 135 VHHTDLDELAAFARENGLTVVAVDNTPGSVPIETVELPRDCLLLFGQEGPGVTEQGHAVA 194

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           +    +   G  +++N   AA +A++   + H
Sbjct: 195 SMTVSIAQFGSTRSINAGVAAGIAMHTWIRQH 226


>gi|77166275|ref|YP_344800.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
           19707]
 gi|254435470|ref|ZP_05048977.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
           AFC27]
 gi|76884589|gb|ABA59270.1| RNA methyltransferase TrmH, group 2 [Nitrosococcus oceani ATCC
           19707]
 gi|207088581|gb|EDZ65853.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus oceani
           AFC27]
          Length = 161

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        +L
Sbjct: 4   VVLLEPEIPPNTGNIIRLCANTGAILHLVQPLGFELDDRRLRRAGLDYHEWAKVKVHPSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              L K      Q    S+  ++P ++   +   AL+ G E +GL  +  E   +  +  
Sbjct: 64  EHFLDKTQPR--QLWACSTRGQQPYDKANFHPGDALLFGPETRGLPRELLETLLSRQVLR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFAK 282
           + M    ++LN+SNA AV LY    Q  FAK
Sbjct: 122 IPMEPTSRSLNLSNAVAVVLYEAWRQQGFAK 152


>gi|312141301|ref|YP_004008637.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311890640|emb|CBH49959.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 233

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG ++R+A AF+   +    R          + A     +   
Sbjct: 80  RRHPLHVAIENFAHDSNIGTVVRTANAFAAAAVHIVGRR-----RWNRRGAMVTDRYQHL 134

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           +  ++L +        G   + +  +    P+E         L+ G EG G+  +    A
Sbjct: 135 VHHTDLDELAAFARENGLTVVAVDNTPGSVPIETVELPRDCLLLFGQEGPGVTEQGHAVA 194

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           +    +   G  +++N   AA +A++   + H
Sbjct: 195 SMTVSIAQFGSTRSINAGVAAGIAMHTWIRQH 226


>gi|307188520|gb|EFN73257.1| RNA methyltransferase-like protein 1 [Camponotus floridanus]
          Length = 459

 Score = 82.4 bits (203), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 5/163 (3%)

Query: 36  FNQKSR-HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVK 94
            N K+R    +  N+ L G   +   +    +      +  + +  L     L     + 
Sbjct: 127 VNVKTRTKREKNNNMLLEGFRLIKDGIQAGIKPKAIFFSRLSDILPLS----LSKEIKLY 182

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            VP +TI              +   P ++          L ++ D++ +P N+G ILR+A
Sbjct: 183 KVPYRTIQLWSNLTTSPGIFGIFEIPDVTAKQPVDDAIPLTIICDNIREPGNLGTILRAA 242

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
            A  C+ ++  K  +    + + ++A GA   +P        D
Sbjct: 243 AAVGCEKLLLMKGCTDLWDSKVLRTAVGAHFRVPIHTSVLWND 285



 Score = 70.1 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 218 KPLEQEIKNDK-IALILGAEGKGLR----PKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +P        K I L++G E +G+                ++ +   +++LNV  AA + 
Sbjct: 384 EPYYTLDFTKKEIVLVIGGETEGVSLESCKLLHARNCVRVNIPLTNGVESLNVGVAAGIV 443

Query: 273 LYITQNHF 280
            +  +  F
Sbjct: 444 TFEMKRQF 451


>gi|154495837|ref|ZP_02034533.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC
           29799]
 gi|150275035|gb|EDN02083.1| hypothetical protein BACCAP_00117 [Bacteroides capillosus ATCC
           29799]
          Length = 163

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +            + ++       +      NL
Sbjct: 4   LVLVEPEIPQNTGNIARTCAATRSRLHLIKPLGFDISDRAVKRAGLDYWHMVDLTVYENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            D   +  +       +++ + +   +    D+  L  G E  GL  + +E        +
Sbjct: 64  EDFFARTGAKDLWL--MTTKAPRSYAEAEFRDECWLFFGKETAGLPREFREAHRDRCIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN++N+ A+  Y      
Sbjct: 122 PMRPDARSLNLANSVAIVTYEALRQL 147


>gi|225017056|ref|ZP_03706248.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
           DSM 5476]
 gi|224950223|gb|EEG31432.1| hypothetical protein CLOSTMETH_00981 [Clostridium methylpentosum
           DSM 5476]
          Length = 172

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +        +   L ++      ++       L
Sbjct: 6   IVLVEPQIPQNTGNIARTCAATGARLHLVKPLGFAIDDKKLKRAGLDYWHYLDITYYDGL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D      + G      ++  +    +    D   ++ G E  GL         ET    
Sbjct: 66  KDFFA--QNSGGNFYYFTTKGQANYSEVAYPDNAYIVFGREDAGLPEDLLFHNPETC--- 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             L M G I++LN+SN  AVA Y     + 
Sbjct: 121 VRLPMRGGIRSLNLSNTVAVATYEVLRQWG 150


>gi|265984588|ref|ZP_06097323.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
 gi|264663180|gb|EEZ33441.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
          Length = 171

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 14  ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 74  PDWHRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVSEAIHDNADERL 133

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 134 LIPMVRSARSLNLAVSVA 151


>gi|294790555|ref|ZP_06755713.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
 gi|294458452|gb|EFG26805.1| RNA methyltransferase, TrmH family [Scardovia inopinata F0304]
          Length = 276

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 12/150 (8%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LD        + +++     NIG+I+R+A AF+  G+     +         K + 
Sbjct: 115 IKADLDRRGRHSFEVAIENWTHDFNIGSIVRTANAFTARGVHIIGPH-----KWNRKGSL 169

Query: 182 GALEHIPYIRISNLTDALQKMH------SWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
               +      +++ + +  +           + I L       P+E     ++  L+ G
Sbjct: 170 MTELYQSVDYYASIDEFVHAVRTRDQESGQHTRLIALDIVPGAVPIESYQFPEQCILLFG 229

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           AEG GL  +  E A  + ++   G +++LN
Sbjct: 230 AEGPGLTSRALEIADDVVYITQYGSVRSLN 259


>gi|72382186|ref|YP_291541.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. NATL2A]
 gi|72002036|gb|AAZ57838.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. NATL2A]
          Length = 166

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 10/141 (7%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+ +AF+    I        E   L ++      H+      +         
Sbjct: 19  PQNTGTIGRTCLAFNMSLDIIKPTGFSFEDKYLKRAGLDYWPHVDVHLYESFEQYKNSFK 78

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP------ 257
           +   + I L+  S   +   I  D   L+ G E  GL          +A + MP      
Sbjct: 79  NS--RIIALTKKSNNLISNIIYKDTDILLFGREDTGLPESIINKCEIVAGIPMPGGENQL 136

Query: 258 --GIIKALNVSNAAAVALYIT 276
             G +++LN+S A+ +  Y  
Sbjct: 137 KTGGVRSLNLSVASGIVCYSA 157


>gi|163938472|ref|YP_001643356.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|229131481|ref|ZP_04260374.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST196]
 gi|163860669|gb|ABY41728.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           weihenstephanensis KBAB4]
 gi|228651981|gb|EEL07925.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           BDRD-ST196]
          Length = 162

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +       ++  +L ++     +H+      ++
Sbjct: 5   VVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKVTYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQE-TATSM 251
            +  +K     F    L+   +K       + +      + G E  GL     E      
Sbjct: 65  EEFYEKNKDGEF--FYLTKYGEKAHTAFNYSKREKDYYFVFGRETNGLPANVIEENFDHC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 123 LRIPMTDKVRSLNLSNTAAILIYEAFRQ 150


>gi|291561907|emb|CBL40712.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium
           SS3/4]
          Length = 164

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 11/153 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            L ++     + +     S+ 
Sbjct: 3   IVLYEPEMPANTGNIGRTCVATNTKLHLIEPLGFKLSEKHLVRAGLDYWDKLDVTVYSDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT----QETATSM 251
            D L+   + G +    ++  +        +  + ++ G E +G+  +     +E     
Sbjct: 63  QDFLK--RNPGAKIYMATTKGEHVYTDVPYDPDVYIMFGPESRGIPEEILVENRENC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYI--TQNHFAK 282
             + M G I++LN+SN+ A+ LY    QN F K
Sbjct: 118 IRIPMWGDIRSLNLSNSVAIVLYEALRQNGFEK 150


>gi|149642437|ref|XP_001510423.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 199

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 15/125 (12%)

Query: 166 KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--SSDSKKPLE-- 221
            R+S S +       +G  + +  + + + ++ L K  + G+   G    S+ + P+   
Sbjct: 77  HRHSASGNPSTE---AGRGQGMHPLVVLSPSECLAK-AAQGWTVAGTVDCSEPRTPVLGC 132

Query: 222 -QEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALY-- 274
                +    L++G EG GL  + ++    + ++     +   I++LNVS AA + L+  
Sbjct: 133 LDFRWDRPTVLVIGNEGSGLSAEVKDACQVLLNVSPGREITSGIESLNVSVAAGIILHSI 192

Query: 275 ITQNH 279
            +Q  
Sbjct: 193 CSQRR 197


>gi|298206902|ref|YP_003715081.1| hypothetical protein CA2559_01575 [Croceibacter atlanticus
           HTCC2559]
 gi|83849536|gb|EAP87404.1| hypothetical protein CA2559_01575 [Croceibacter atlanticus
           HTCC2559]
          Length = 153

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 9/137 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G + R+A       I T  +    +++    S    ++ +PY    +  D    + 
Sbjct: 21  PENLGVLWRTAQNLGASFIFTIGKRYAHQASDTHNS----VKSMPYYHYKDFNDFFDHLP 76

Query: 204 SWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G + +G+  +++   LE      +   +LGAE  GL  +  + +  +  +       +
Sbjct: 77  K-GVRIVGVEKTETAIQLEDFEHPRRCVYLLGAEDHGLTREAIDRSHFL--IQFKSEF-S 132

Query: 263 LNVSNAAAVALYITQNH 279
           LNV+ A ++ LY    +
Sbjct: 133 LNVAVAGSIVLYDRSRN 149


>gi|295094554|emb|CBK83645.1| Predicted rRNA methylase (SpoU class) [Coprococcus sp. ART55/1]
          Length = 165

 Score = 82.4 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     + +      N 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVAAGARLHLIEPLGFQINEKQLKRAGLDYWDKLDVTTYVNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L    + G +    ++ ++K        D   ++ G E  G+  +   +   +   +
Sbjct: 64  EDFLA--KNPGAKIYMATTKARKKYTDVKFEDDAYIMFGKESAGIPEEILVDYKDTSIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+ N+ A+ LY     
Sbjct: 122 PMFPDIRSLNLGNSVAIVLYEALRQ 146


>gi|225569887|ref|ZP_03778912.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM
           15053]
 gi|225161357|gb|EEG73976.1| hypothetical protein CLOHYLEM_05981 [Clostridium hylemonae DSM
           15053]
          Length = 163

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            L ++     + +      + 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVAANARLHLIEPLGFRLNEKNLRRAGMDYWDELDVTTYIDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + L+   + G +    ++ +              ++ G E  G+  +   +       +
Sbjct: 64  DEFLE--KNEGARIYMATTKAPNVYTDVRYEPDCYIMFGKESAGIPEEILVKHKEDSIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M G I++LN+ N+ A+ LY    QN FA
Sbjct: 122 PMAGDIRSLNLGNSVAIILYEALRQNGFA 150


>gi|261219673|ref|ZP_05933954.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261322562|ref|ZP_05961759.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
 gi|260924762|gb|EEX91330.1| tRNA/rRNA methyltransferase [Brucella ceti M13/05/1]
 gi|261295252|gb|EEX98748.1| tRNA/rRNA methyltransferase [Brucella ceti M644/93/1]
          Length = 171

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 14  ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRTLKRAGMDYLEQAALTRH 73

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 74  PDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 133

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 134 LIPMVRSARSLNLAVSVA 151


>gi|312792688|ref|YP_004025611.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179828|gb|ADQ39998.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 154

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R+         +        E   L ++     +++      +L
Sbjct: 5   IVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYKDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            D  +   + G      S+  K+   Q    D   L+ G E  GL     ++       +
Sbjct: 65  NDFFE--KNRGANIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHRTYRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN+ A+ LY       
Sbjct: 123 PMINDVRSLNLSNSVAIVLYEALRQLG 149


>gi|160893756|ref|ZP_02074540.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50]
 gi|156864741|gb|EDO58172.1| hypothetical protein CLOL250_01310 [Clostridium sp. L2-50]
          Length = 163

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     + +      + 
Sbjct: 4   IVLHEPEMPANTGNIGRTCVAAGARLHLIEPLGFQINEKQLKRAGLDYWDKLDVTIYDDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D L+   + G +    ++ SK+        +   ++ G E  G+  +      ETA   
Sbjct: 64  NDFLK--KNPGAKIYMATTKSKQKYTDVNYEEDAYIMFGKESAGIPEEILLDYKETA--- 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN++N+ A+ LY     
Sbjct: 119 VRIPMFPEIRSLNLANSVAIVLYEALRQ 146


>gi|260587422|ref|ZP_05853335.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
 gi|331083702|ref|ZP_08332813.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542289|gb|EEX22858.1| RNA methyltransferase, TrmH family [Blautia hansenii DSM 20583]
 gi|330403913|gb|EGG83465.1| hypothetical protein HMPREF0992_01737 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 166

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L +VL     P N G I R+ VA      +            L ++     + +    
Sbjct: 2   AKLNIVLFEPEIPANTGNIGRTCVATGTRLHLIEPLGFQLNEKALKRAGMDYWKDLDVTT 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             N  D L    + G +    ++ + K        +   ++ G E  G+  +   E   +
Sbjct: 62  YINYQDFLD--RNPGAKVYMATTKAPKTYVDVEYEEDCYIMFGKESAGIPEEILLENQET 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
              + M G I++LN+SN+ A+ LY    QN+F
Sbjct: 120 AIRIPMIGDIRSLNLSNSVAIVLYEALRQNNF 151


>gi|253995943|ref|YP_003048007.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253982622|gb|ACT47480.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera mobilis
           JLW8]
          Length = 154

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E   L ++     E+       N 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGAQLHLVKPLGFSLEDKQLKRAGLDYHEYANLKVHENW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
            D    +   G +   +++               A + G E +GL  + +   TA     
Sbjct: 64  EDCKAAL--AGHRLFAITTKGSTTHSHIQFKAGDAFVFGPETRGLSEEVRNEFTAEHRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN+AA+ LY       
Sbjct: 122 LPMLPNSRSLNLSNSAAILLYEAWRQIG 149


>gi|170744270|ref|YP_001772925.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
 gi|168198544|gb|ACA20491.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
          Length = 163

 Score = 82.0 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A        I            L +S    L+H+   R  +  +      
Sbjct: 12  PQNTGTMLRLAACLGAAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSFAEFEAWRR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + +  ++    P  +        L++G E  G+       A +   + +   +++L
Sbjct: 72  RASLRLVLATTAGALPYTEFAYRPDDCLLVGRESAGVPDSVHAAAEARVVIPLRPGLRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+ L      
Sbjct: 132 NVAVAAAMILGEALRQ 147


>gi|224012188|ref|XP_002294747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969767|gb|EED88107.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 156

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 24/150 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS---PSESAVL-------AKSASGALE 185
           +++ +++   N+  +L+ A +F    I    + S      S             ASG   
Sbjct: 5   LIITNISKSRNVKNLLQIAASFGAPKIFVVGQKSFDFDPSSETTDVPLLLQRHIASG--- 61

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +  +R   L + +      G +       S K LE E      A+++G EG G+  K  
Sbjct: 62  RMEIVRFDKLKEFI------GVEI----DSSAKNLETEPFFTSAAIMMGNEGSGMSSKQM 111

Query: 246 ETATSMAHLHMP-GIIKALNVSNAAAVALY 274
                   +    G   +LNVS AA + L+
Sbjct: 112 SLCDGFVRISQFGGGTASLNVSVAAGLVLH 141


>gi|320108950|ref|YP_004184540.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
 gi|319927471|gb|ADV84546.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
          Length = 240

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 17/163 (10%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +A    ++ +VL    +P NIGA+ R+   F  D +     YS   +   A+SA  A   
Sbjct: 4   EAGLRDRVAVVLVGARNPLNIGAVARAMSNFGFDDLRLVNDYSIPLAE--ARSAVNASHV 61

Query: 187 IPYIR-ISNLTDALQKMHSWGFQTIGLSSDSKK----------PLEQEIKNDKIALILGA 235
           +   R   ++ +A+           G ++  ++           + + +  DKIA++ G+
Sbjct: 62  LQAAREFGSVAEAVADCQ----LIYGTTAIGERKPEHPVDALPDVLEHVGADKIAILFGS 117

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E  GL  +       +  + M     ++N+  AAAV LY    
Sbjct: 118 EKTGLSNEALSHCQRLLTIPMSATNVSMNLGQAAAVILYELVR 160


>gi|266619523|ref|ZP_06112458.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
 gi|288868934|gb|EFD01233.1| RNA methyltransferase, TrmH family [Clostridium hathewayi DSM
           13479]
          Length = 164

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           ++ ++     + +      + 
Sbjct: 3   VVLLEPEMPANTGNIGRTCVATGTKLHLIEPLGFRLNDKLIKRAGLDYWDKLDVTVYCDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+   + G +    ++   K            L+ G E  G+  +   E       +
Sbjct: 63  QDFLE--RNPGAKIYMATTKGLKVYSDVEYEPDCFLMFGKESAGIPEEILLENQEQCVRI 120

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFAK 282
            M G I++LN+SN+ ++ LY    QN F K
Sbjct: 121 PMWGDIRSLNLSNSVSIVLYEALRQNGFEK 150


>gi|228989669|ref|ZP_04149651.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
           pseudomycoides DSM 12442]
 gi|228995858|ref|ZP_04155516.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock3-17]
 gi|229003475|ref|ZP_04161293.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228757713|gb|EEM06940.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock1-4]
 gi|228763830|gb|EEM12719.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus mycoides
           Rock3-17]
 gi|228770003|gb|EEM18585.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus
           pseudomycoides DSM 12442]
          Length = 162

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +       ++  +L ++     +H+      ++
Sbjct: 5   VVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE-TATSMAH 253
            +  +K     F  +    +         K +K    + G E  GL     E        
Sbjct: 65  EEFYEKNKDGEFFYLTKYGEKAHTAFDYSKVEKDYYFVFGRETNGLPANVIEENFDHCLR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M   +++LN+SN AA+ +Y     
Sbjct: 125 IPMTDKVRSLNLSNTAAILIYEAFRQ 150


>gi|302672183|ref|YP_003832143.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396656|gb|ADL35561.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
          Length = 166

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     +H+   R  + 
Sbjct: 3   IVLHQPEIPQNTGNIGRTCVATGTSLHLIEPLGFRLGEKDLKRAGMDYWQHLDVTRYVDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D L+     G +    ++ +KK            ++ G E  G+  +      E     
Sbjct: 63  QDFLE--KHPGAKIWMATTKAKKCYTDVQFGMDDFIMFGKESAGIPEEILVDNEENC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
             + M   I++LN+SN+ A+ LY    QN+FA
Sbjct: 118 IRIPMGSDIRSLNLSNSVAIVLYEALRQNNFA 149


>gi|158425126|ref|YP_001526418.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158332015|dbj|BAF89500.1| tRNA/rRNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 156

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G  LR+         I      P  +    ++    L+ + + R ++     +    
Sbjct: 12  QNTGTCLRTGACLGVPVHIIEPAGFPVSAPAFRRAGMDYLDAVEWQRHASFAAFERWRRE 71

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +  ++    PL          L+ G E  G   +    A +   + +   +++LN
Sbjct: 72  EGRRLVLFTTKGATPLPAFTFQPGDVLLFGRESAGAPEEVHAAADARVKIPLRPGMRSLN 131

Query: 265 VSNAAAVALYITQNH 279
           V+ +AA+AL      
Sbjct: 132 VAVSAAMALGEALRQ 146


>gi|312135814|ref|YP_004003152.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           owensensis OL]
 gi|311775865|gb|ADQ05352.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           owensensis OL]
          Length = 154

 Score = 82.0 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R+         +        E   L ++     +++      +L
Sbjct: 5   IVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYRDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            D  +   + G      S+  K+   Q    D   L+ G E  GL     ++       +
Sbjct: 65  NDFFE--KNRGANIFYYSTKGKQYYTQAPYEDNCYLMFGKETAGLPRWLIEQNIHRTYRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN+ A+ LY       
Sbjct: 123 PMISDVRSLNLSNSVAIVLYEALRQLG 149


>gi|303247228|ref|ZP_07333502.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans
           JJ]
 gi|302491387|gb|EFL51275.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio fructosovorans
           JJ]
          Length = 156

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 8/148 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G++ R   A     +   K    S      K A   L++ PY+ ++  
Sbjct: 4   VVLYEPEIPQNTGSVARLCAAAK-TPLHLIKPLGFSLEDRYLKRAG--LDYWPYVDLTVW 60

Query: 196 TDALQKMHSW-GFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                 + +    + +  +      +  P          +LI G E +GL     + A+ 
Sbjct: 61  DRFDDYLAARPRNRLVATTAGNRGHTAVPYHTLAYTPNDSLIFGTESRGLPESLLDAASI 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
              + + G +++LN++NAA++ LY    
Sbjct: 121 RLRIPIWGHVRSLNLANAASIVLYEALR 148


>gi|251798741|ref|YP_003013472.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           JDR-2]
 gi|247546367|gb|ACT03386.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp.
           JDR-2]
          Length = 154

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++   L ++       +      + 
Sbjct: 5   IVLVEPEIPANTGNIARTCAATGAHLHLVRPLGFQTDDRTLKRAGLDYWHAVHVEYHDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + LQ  +  G      S+ + K   +    D    + G E KGL  +  +    +   +
Sbjct: 65  KE-LQDANPNGRFFYA-STRATKVYTEFDFRDGDFFVFGKETKGLPQELIDANLDTCMRM 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G +++LN+SN+AA+ +Y     
Sbjct: 123 PMTGDVRSLNLSNSAAIIVYEALRQ 147


>gi|229083785|ref|ZP_04216100.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-44]
 gi|228699525|gb|EEL52195.1| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus
           Rock3-44]
          Length = 162

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +       ++  +L ++     +H+      ++
Sbjct: 5   VVLYQPEIPANTGNIARTCAATGTELHLIRPLGFSTDDKMLKRAGLDYWQHVKITYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQE-TATSM 251
            +  +   +   +   L+   +K   Q   +        + G E  GL     E      
Sbjct: 65  EEFYE--KNSDGEFFYLTKYGEKAHTQFDYSNVEKNYYFVFGRETNGLPANVIEENFDHC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 123 LRIPMTDKVRSLNLSNTAAILIYEAFRQ 150


>gi|118592061|ref|ZP_01549455.1| tRNA/rRNA methyltransferase (SpoU) [Stappia aggregata IAM 12614]
 gi|118435357|gb|EAV42004.1| tRNA/rRNA methyltransferase (SpoU) [Stappia aggregata IAM 12614]
          Length = 233

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 10/158 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +      +  + ++   N+G ++RSA AF  +   T                S +  H
Sbjct: 50  DELMRGYFAIGAEGLSKRMNLGTLMRSAHAFGANFFFTVDA-DQKLRKAPPSDTSKSPGH 108

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRPKT 244
           +P     +  D +      G Q +G+   + + +E       +  A +LG E   L P+ 
Sbjct: 109 LPVFTWDS-VDTMDLPR--GCQLVGIEL-TDESIELPSFGHPLQAAYVLGPERGSLSPQM 164

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E    +  +     I   NV+ A A+ +Y       +
Sbjct: 165 LERCDHVVKIPTKFCI---NVAMAGAIVMYDRHRALGR 199


>gi|50955804|ref|YP_063092.1| tRNA/rRNA methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50952286|gb|AAT89987.1| tRNA/rRNA methyltransferase [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 218

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG+I+RSA AF+ D +    R          + A     +   
Sbjct: 68  RRHPFHVAIENWQHDMNIGSIVRSANAFAADTVHIVGRR-----RWNKRGAMVTDRYQHL 122

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               N+   +    + G   + +        +E      +  L+ G EG GL       A
Sbjct: 123 RHHDNVDSFVAWARADGLPIVAVDNVPGSVRIETTGLPRECVLLFGQEGPGLSEPAIAAA 182

Query: 249 TSMAHLHMPGIIKALN 264
            ++  +   G  +++N
Sbjct: 183 DTVVEISQFGSTRSIN 198


>gi|62184725|ref|YP_219510.1| putative rRNA methylase [Chlamydophila abortus S26/3]
 gi|62147792|emb|CAH63538.1| putative rRNA methylase [Chlamydophila abortus S26/3]
          Length = 156

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H + P N G I R+ +A   + I+            + ++     + +    + +L
Sbjct: 3   VVLYHPDIPQNTGNIGRTCIALGAELILVRPLGFSLLDKFVKRAGMDYWDKVNLSVVDSL 62

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSM 251
            + L     +G    +   LS+   +             + G+E KGL  +  +      
Sbjct: 63  DEVL-----FGVDEDKIFCLSTKGAQYYGDVALPMDGVYVFGSESKGLPEEVLKKYYNHT 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
            +L M   I++LN++    V L+     
Sbjct: 118 YYLPMQPGIRSLNLATTVGVVLFEAVRQ 145


>gi|218885937|ref|YP_002435258.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756891|gb|ACL07790.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 152

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 5/146 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G + R   A      +        +   L ++    L++ P++ +S  
Sbjct: 3   IVLYHPEIPPNTGNVARLCAATRTQLHLIEPLGFSLDDRYLKRA---GLDYWPHVNLSVW 59

Query: 196 TDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            D    +   G   + +  S+ +   + +    ++ AL+ G E  GL  +  +       
Sbjct: 60  PDWQAYLDGPGSERRLVMTSARAGAAVHRFDFTERDALVFGPETTGLPAEVLDATPHHVR 119

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + + G +++LN+S A  + LY    H
Sbjct: 120 IPIWGEVRSLNLSTATGIVLYQALAH 145


>gi|71745782|ref|XP_827521.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70831686|gb|EAN77191.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 586

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 5/169 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             H   +      Q  ++ S  + + + G H +   L+        LL  +    +  W 
Sbjct: 130 ERHHLIQHFVKLRQNPKYRSSKQMMVVGGRHLLHE-LHKRGYTPRHLLVREGQ-QKPKWA 187

Query: 85  ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            N      +  V     D    G +       +   P     +   +    ++VLD+V+D
Sbjct: 188 TNTGVKTEIIRVDRHVADVCSPGNDGFIGDFDIPKPPPKESLIANKQRFDRVLVLDNVDD 247

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
           P  +G +LR+A  F  D +I T   +      + ++A GA     +P  
Sbjct: 248 PGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGAHFQKAVPIY 296


>gi|297243148|ref|ZP_06927086.1| rRNA methylase [Gardnerella vaginalis AMD]
 gi|296889359|gb|EFH28093.1| rRNA methylase [Gardnerella vaginalis AMD]
          Length = 268

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 32/192 (16%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY------------- 168
           +   LD+    +  + +++     NIG+++R+A AF+   +     +             
Sbjct: 74  IKADLDSKGRHEFEVAVENWTHDFNIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELY 133

Query: 169 ------------SPSESAVLAKSASGALEHIPYIRISNLTDA-----LQKMHSWGFQTIG 211
                         +    + K A  A + +   +     +A     +++  +   + I 
Sbjct: 134 QYVECCPTIETLVTNWRENMLKEAEEAHQLLLKAQTEGNKEAEKIANIKEHDAKNARVIA 193

Query: 212 LSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           L        +E      +  ++ GAEG GL  K  E A  + ++   G +++LN   AAA
Sbjct: 194 LDIIPGAVAMENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAA 253

Query: 271 VALY-ITQNHFA 281
           V+++     H A
Sbjct: 254 VSMHAWIAQHAA 265


>gi|182437537|ref|YP_001825256.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326778192|ref|ZP_08237457.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178466053|dbj|BAG20573.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326658525|gb|EGE43371.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 244

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 7/148 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD +R     + +++     NIG+++R+A AF    I    R          
Sbjct: 79  TREAIVADLD-LRRHDFHVAVENWGHDFNIGSVVRTANAFLAKEIHIVGRR-----RWNR 132

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +       +  D      + G   IG+       PLE+     +  L+ G E
Sbjct: 133 RGAMVTDRYQHVRHHPDTADLTAWAAAEGLPIIGIDNLPGAVPLERTELPRRCVLLFGQE 192

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G GL  + +E A+ +  +   G  +++N
Sbjct: 193 GPGLTEEAREHASMVCSIAQFGSTRSIN 220


>gi|261331720|emb|CBH14714.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 586

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 5/169 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             H   +      Q  ++ S  + + + G H +   L+        LL  +    +  W 
Sbjct: 130 ERHHLIQHFVKLRQNPKYRSSKQMMVVGGRHLLHE-LHKRGYTPRHLLVREGQ-QKPKWA 187

Query: 85  ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            N      +  V     D    G +       +   P     +   +    ++VLD+V+D
Sbjct: 188 TNTGVKTEIIRVDRHVADVCSPGNDGFIGDFDIPKPPPKESLIANKQRFDRVLVLDNVDD 247

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
           P  +G +LR+A  F  D +I T   +      + ++A GA     +P  
Sbjct: 248 PGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARGAHFQKAVPIY 296


>gi|283782612|ref|YP_003373366.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
 gi|283441898|gb|ADB14364.1| RNA methyltransferase, TrmH family [Gardnerella vaginalis 409-05]
          Length = 268

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 72/192 (37%), Gaps = 32/192 (16%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY------------- 168
           +   LD+    +  + +++     NIG+++R+A AF+   +     +             
Sbjct: 74  IKADLDSKGRHEFEVAVENWTHDFNIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELY 133

Query: 169 ------------SPSESAVLAKSASGALEHIPYIRISNLTDA-----LQKMHSWGFQTIG 211
                         +    + + A  A + +   +     +A     +++  +   + I 
Sbjct: 134 QYVECCPTIETLVTNWRENIVREAEEAHQLLLKAQAEGNKEAEKIANIKEHDAKNARVIA 193

Query: 212 LSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           L        +E      +  ++ GAEG GL  K  E A  + ++   G +++LN   AAA
Sbjct: 194 LDIIPGAVAMENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAA 253

Query: 271 VALY-ITQNHFA 281
           V+++     H A
Sbjct: 254 VSMHAWIAQHAA 265


>gi|229830204|ref|ZP_04456273.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
           14600]
 gi|229791502|gb|EEP27616.1| hypothetical protein GCWU000342_02313 [Shuttleworthia satelles DSM
           14600]
          Length = 169

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 11/153 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I R+ VA      +            LA++     + +      + 
Sbjct: 5   IILHEPEIPANTGNIGRTCVAIGATLHLIEPLGFVINDKNLARAGMDYWKQLDVRTYLDW 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D      +   +    ++  +             ++ G E  G+  +      E     
Sbjct: 65  EDFCA--KNPDARIWMATTKGRHVYSDVSYGPDDYIMFGKESAGIPEEILIRQPERC--- 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYI--TQNHFAK 282
             + M G I++LN+SN+ A+  Y    QNHF K
Sbjct: 120 IRIPMQGEIRSLNLSNSVAIVAYEALRQNHFDK 152


>gi|78779323|ref|YP_397435.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712822|gb|ABB49999.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9312]
          Length = 160

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I RS  AF+    +        E   L ++       +   + +N    L    
Sbjct: 11  PQNTGNIARSCAAFNIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNKYANFKKFLASKQ 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----- 258
           +   + I  S  +   L+     +   L+ G E  GL     + +  +  + MP      
Sbjct: 71  TK--RIISFSKKNGIYLKDFKFQEDDVLLFGREDSGLPDLIIDNSDYLISIFMPNLQTEN 128

Query: 259 ----IIKALNVSNAAAVALYITQNHFA 281
                +++LN+S A  +A+Y       
Sbjct: 129 NDQKGVRSLNLSVACGIAIYEAHKQIN 155


>gi|308234639|ref|ZP_07665376.1| RNA methyltransferase, TrmH family protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 268

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 32/192 (16%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LD+    +  + +++     NIG+++R+A AF+   +     +  +    L     
Sbjct: 74  IKADLDSKGRHEFEVAVENWTHDFNIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELY 133

Query: 182 GALEHIPYIR--ISNLTDALQK---------MHSW-------------------GFQTIG 211
             +E  P I   ++N  + + +         + +                      + I 
Sbjct: 134 QYVECCPTIETLVTNWRENIARETEEAHQLLLKAQADGNKEAEKIANIKEQDAKNARVIA 193

Query: 212 LSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           L        +E      +  ++ GAEG GL  K  + A  + ++   G +++LN   AAA
Sbjct: 194 LDIIPGAVAMETYKFPKRCLMLFGAEGPGLSKKALKMADDVVYISQFGSVRSLNAGAAAA 253

Query: 271 VALY-ITQNHFA 281
           V+++     H A
Sbjct: 254 VSMHAWIAQHAA 265


>gi|312621608|ref|YP_004023221.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312876538|ref|ZP_07736521.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796749|gb|EFR13095.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312202075|gb|ADQ45402.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 154

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R+         +        E   L ++     +++      +L
Sbjct: 5   IVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYKDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            D  +   + G      S+  K+   Q    D   L+ G E  GL     ++       +
Sbjct: 65  NDFFE--KNRGANIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHRTYRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN+ A+ LY       
Sbjct: 123 PMISDVRSLNLSNSVAIVLYEALRQLG 149


>gi|312126860|ref|YP_003991734.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776879|gb|ADQ06365.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 154

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R+         +        E   L ++     +++      +L
Sbjct: 5   IVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYKDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            D  +   + G      S+  K+   Q    D   L+ G E  GL     ++       +
Sbjct: 65  NDFFE--KNRGANIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHRTYRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN+ A+ LY       
Sbjct: 123 PMISDVRSLNLSNSVAIVLYEALRQLG 149


>gi|254294666|ref|YP_003060689.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254043197|gb|ACT59992.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 165

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD- 197
           + ++ P N+GA++R+A AF      +        + + A   S A E++PY    ++ D 
Sbjct: 10  EGISKPMNMGALMRTAHAFGASFFYSVDA-DVKVTDMYASDTSKAYENMPYYNWDSIEDM 68

Query: 198 ALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAE-GKGLRPKTQETATSMAHLH 255
           AL      G Q +G+   D    L +       A +LG E G  L P+       +  + 
Sbjct: 69  ALP----RGCQLVGIELTDDAVELPEFKHPRAAAYVLGRELGN-LSPEMMAKCHHIVKIP 123

Query: 256 MPGIIKALNVSNAAAVALYIT 276
               I   NVS A A+ +Y  
Sbjct: 124 TKFCI---NVSLAGALVMYDR 141


>gi|78184720|ref|YP_377155.1| SpoU family tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
 gi|78169014|gb|ABB26111.1| putative tRNA/rRNA methyltransferase (SpoU family) [Synechococcus
           sp. CC9902]
          Length = 166

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 9/159 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L + L     P N G I R+  AF     +        +   + ++      H+  
Sbjct: 6   PEAPLRVALFEPRIPPNTGNIARTCAAFQLPLSLIEPLGFQIDDRSVRRAGLDYWPHVQL 65

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +  +A++++     + IG S      L          L+ G E  GL    ++   
Sbjct: 66  STHGSF-EAMKQVLLPQSRIIGCSRRGGSCLSDFEFQHGDVLLFGREDTGLPDDVRDQCH 124

Query: 250 SMAHLHMPGIIK--------ALNVSNAAAVALYITQNHF 280
           ++  + MPG           +LN+S A A+  Y+  +  
Sbjct: 125 TIVTIPMPGAADSSGQGGVRSLNLSVACALVTYVAGHQL 163


>gi|50085960|ref|YP_047470.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531936|emb|CAG69648.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 159

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E+       N+
Sbjct: 4   VVLFEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEYARMKIWDNI 63

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-- 250
              L+ + S G        L++           N  +AL++G E +GL    +       
Sbjct: 64  EQCLESLKSQGISESDIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPESVRFMFPQKN 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV +Y     
Sbjct: 124 WIRLPMAENSRSLNLSNATAVIVYEAWRQ 152


>gi|225026878|ref|ZP_03716070.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353]
 gi|224955802|gb|EEG37011.1| hypothetical protein EUBHAL_01132 [Eubacterium hallii DSM 3353]
          Length = 163

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           +L ++     + +      N 
Sbjct: 4   IVLHEPEMPANTGNIGRTCVATGSILHLIEPLGFKINDKMLKRAGLDYWDKLDVRTYVNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L    + G +    ++ SK+        D   ++ G E  G+  +   E   +   +
Sbjct: 64  EDFLA--KNPGAKIYMATTKSKQTYTDVEYEDGCYIMFGKESAGIPEEILLEHKETAVRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+ N+ A+ LY     
Sbjct: 122 PMLEHIRSLNLGNSVAIVLYEALRQ 146


>gi|313665262|ref|YP_004047133.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma leachii
           PG50]
 gi|312949880|gb|ADR24476.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           leachii PG50]
          Length = 181

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+GAI+R+ VA +    I        +   L++S++   +++  IR  + 
Sbjct: 8   IVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRSSANEYKYVDCIRYDDW 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLR-PKTQETATSM 251
            D + K          LS   +KP+        ND + L+ G E  G+  P  +E   + 
Sbjct: 68  NDFITKHK--NITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKEHYNTT 125

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++N   +A Y     
Sbjct: 126 FRIPMISETRSLNIANTVGIASYEVLRQ 153


>gi|254719580|ref|ZP_05181391.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. 83/13]
 gi|306837931|ref|ZP_07470791.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
 gi|306407019|gb|EFM63238.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. NF 2653]
          Length = 159

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 2   ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 62  PDWHRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVSEAIHDNADERL 121

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 122 LIPMVRSARSLNLAVSVA 139


>gi|83319378|ref|YP_424348.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283264|gb|ABC01196.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 181

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+GAI+R+ VA +    I        +   L++S++   +++  IR  + 
Sbjct: 8   IVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRSSANEYKYVDCIRYDDW 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLR-PKTQETATSM 251
            D +            LS   +KP+        ND + L+ G E  G+  P  +E   + 
Sbjct: 68  NDFIT--KHQNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKEHYNTT 125

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++N   +A Y     
Sbjct: 126 FRIPMISETRSLNIANTVGIASYEVLRQ 153


>gi|50123235|ref|YP_052402.1| putative RNA-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613761|emb|CAG77212.1| putative RNA-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 154

 Score = 81.2 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +     R  N  D L  +   
Sbjct: 14  NTGNIIRLVANNGCMLHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHKNYQDFLAAV--P 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
           G +    ++   +P +Q        L+ G+E  GL  + +    +     + M    ++L
Sbjct: 72  GKRIFACTTKGSRPYDQPTYQPGDVLLFGSETSGLPDEIRNGFESDFRIRIPMQSDSRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNA A+  Y     
Sbjct: 132 NLSNAVAIISYEAWRQ 147


>gi|307942542|ref|ZP_07657890.1| RNA methyltransferase [Roseibium sp. TrichSKD4]
 gi|307774181|gb|EFO33394.1| RNA methyltransferase [Roseibium sp. TrichSKD4]
          Length = 181

 Score = 81.2 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + ++   N+G ++RSA AF  +   T    + +   V     S +  H+P     +  D 
Sbjct: 10  EGLSKKMNLGTLMRSAHAFGANFFFTVDA-AQNLRKVPPTDTSKSPGHLPLFNWDS-VDT 67

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRPKTQETATSMAHLHM 256
           ++     G Q +G+   + + ++       +  A +LG E   L P+  +    +  +  
Sbjct: 68  MELPK--GCQLVGVEL-TDESIDLPSFGHPLQAAYVLGPERGSLSPQMLDRCDHVIKIPT 124

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
              I   NV+ A A+ +Y       +
Sbjct: 125 KFCI---NVAMAGAIVMYDRHRALGR 147


>gi|298253229|ref|ZP_06977021.1| rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297532624|gb|EFH71510.1| rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 268

 Score = 81.2 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 71/190 (37%), Gaps = 32/190 (16%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY------------- 168
           +   LD+    +  + +++     NIG+++R+A AF+   +     +             
Sbjct: 74  IKADLDSKGRHEFEVAVENWTHDFNIGSMVRTANAFTAKKVYIVGPHKWNRKGSLMTELY 133

Query: 169 ------------SPSESAVLAKSASGALEHIPYIRISNLTDA-----LQKMHSWGFQTIG 211
                         +    + K A  A + +   +     +A     +++  +   + I 
Sbjct: 134 QYVECCPTIETLVTNWRENMLKEAEEAHQFLLKAQAEGNKEAEKIANIKEQDAKNARVIA 193

Query: 212 LSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           L        +E      +  ++ GAEG GL  K  E A  + ++   G +++LN   AAA
Sbjct: 194 LDIIPGAVAMENYKFPKRCLMLFGAEGPGLSKKALEMADDVVYISQFGSVRSLNAGAAAA 253

Query: 271 VALY-ITQNH 279
           V+++     H
Sbjct: 254 VSMHAWIAQH 263


>gi|163796242|ref|ZP_02190203.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159178384|gb|EDP62926.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 153

 Score = 81.2 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P N G ILR A        I            L ++    LE     R S+ 
Sbjct: 3   LVLFQPDIPQNAGTILRLAACVGVGVDIIEPCGFVWSEPRLRRAGMDYLEFATVARHSSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L    S G +   L++    PL      +   L+LG E  G+       A     + 
Sbjct: 63  EAFLAA-RSPG-RLALLTTRGATPLPDARFENDDHLVLGRESAGVPDALHTAADLAVRVP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           M    ++LNV+  A + L       A
Sbjct: 121 MVPGARSLNVAVTAGMVLAEALRQTA 146


>gi|160937817|ref|ZP_02085176.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439256|gb|EDP17009.1| hypothetical protein CLOBOL_02709 [Clostridium bolteae ATCC
           BAA-613]
          Length = 168

 Score = 81.2 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 3/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     + +     S+ 
Sbjct: 4   IVLLEPEMPSNTGNIGRTCVATQTRLHLIEPLGFKLNEKALKRAGLDYWDKLDVTVYSDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
            D L++           ++ ++K            L+ G E  G+  +           +
Sbjct: 64  KDFLERNPQASGNMYFATTKARKVYSDVTYGPDCYLMFGRESAGIPEEILVHNEDHCIRI 123

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFAK 282
            M G I++LN+SN+AA+ LY    QN F K
Sbjct: 124 PMWGDIRSLNLSNSAAIVLYEALRQNGFEK 153


>gi|72162848|ref|YP_290505.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
 gi|71916580|gb|AAZ56482.1| tRNA/rRNA methyltransferase [Thermobifida fusca YX]
          Length = 227

 Score = 81.2 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG+++R+A AF+   +    R          + A     +   
Sbjct: 75  RRHPFHVAIENWEHDFNIGSVVRTANAFAARAVHIVGRR-----RWNRRGAMVTDRYQHI 129

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    +    +     IG+       PLE      +  L+ G EG GL  + ++  
Sbjct: 130 HHHPDTASLVAWAEAHDLPLIGIDNLPGSVPLETYPLPRECVLVFGQEGPGLSEEVRKVC 189

Query: 249 TSMAHLHMPGIIKALN 264
            S+  +   G  +++N
Sbjct: 190 VSVLSIAQFGSTRSIN 205


>gi|253699560|ref|YP_003020749.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21]
 gi|251774410|gb|ACT16991.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M21]
          Length = 158

 Score = 81.2 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 7/151 (4%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R   A      +  K    ++   L ++       +    
Sbjct: 5   KPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEVEIHY 64

Query: 192 ISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-A 248
             +L      +     G + +  S  + K            ++ G E KGL  +  E  A
Sbjct: 65  WPDLP----ALKQAYPGGRFVYTSKKADKSYLAFTFLPGDFIVFGKETKGLPEELIEANA 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +   + +PG +++LN+S +A + LY     
Sbjct: 121 QTAVRIPIPGKVRSLNLSTSAGIVLYEALRQ 151


>gi|169794928|ref|YP_001712721.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213157667|ref|YP_002320465.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057]
 gi|215482474|ref|YP_002324660.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|301344898|ref|ZP_07225639.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           AB056]
 gi|301511069|ref|ZP_07236306.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           AB058]
 gi|301596286|ref|ZP_07241294.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           AB059]
 gi|332854216|ref|ZP_08435236.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013150]
 gi|332866342|ref|ZP_08436947.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013113]
 gi|169147855|emb|CAM85718.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213056827|gb|ACJ41729.1| RNA methyltransferase, TrmH family [Acinetobacter baumannii AB0057]
 gi|213987372|gb|ACJ57671.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|332728141|gb|EGJ59529.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013150]
 gi|332734690|gb|EGJ65794.1| RNA methyltransferase, TrmH family, group 2 [Acinetobacter
           baumannii 6013113]
          Length = 157

 Score = 81.2 bits (200), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N+
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWDNI 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
                 + + G      L++           N  +AL++G E +GL    +         
Sbjct: 64  ELCRADLKAKGVEHIFPLTTKGSATPHTVDLNRPVALLMGPETRGLPEHVRLMFPQEQWI 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 124 RLPMAENSRSLNLSNATAVIVYEAWRQ 150


>gi|119475548|ref|ZP_01615901.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119451751|gb|EAW32984.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 154

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-ALQKMHS 204
           N G I+R      C   I        E   L ++    L++     ++   D A+     
Sbjct: 14  NTGNIIRLCANNGCHLHIIEPMGFDFEDKKLRRA---GLDYSDLAHVTRYPDYAVFAEQM 70

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKA 262
            G + +  ++   +  +Q        L+ G+E  GL  + +++  A ++  + M    ++
Sbjct: 71  NGRRILACTTKGSRHYDQMDYQKGDVLLFGSETAGLPAELRDSFPADNLLKIPMHPTSRS 130

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ A+  Y       
Sbjct: 131 LNLSNSVAIITYEAWRQLG 149


>gi|222530099|ref|YP_002573981.1| TrmH family group 2 RNA methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456946|gb|ACM61208.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 154

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R+         +        E   L ++     +++      +L
Sbjct: 5   IVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYKDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            +  +   + G      S+  K+   Q    D   L+ G E  GL     ++       +
Sbjct: 65  NEFFE--KNRGANVFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPQWLIEQNIHRTYRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN+ A+ LY       
Sbjct: 123 PMISDVRSLNLSNSVAIVLYEALRQLG 149


>gi|119960823|ref|YP_946361.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119947682|gb|ABM06593.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 228

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 9/143 (6%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD+ R+    + +++     NIG ++R+A AF    +    R          + A   
Sbjct: 70  ADLDSKRH-DFHIAIENWQHDLNIGTVVRTANAFLAKEVHIIGRR-----RWNRRGAMVT 123

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLR 241
             +        + D +Q     G   IG+    DS  PLE         L+ G EG GL 
Sbjct: 124 DRYQHVRHHPTVEDFVQWAEGEGLAVIGIDIFPDS-VPLETYDLPKNCVLVFGQEGPGLT 182

Query: 242 PKTQETATSMAHLHMPGIIKALN 264
           P+  + A +   +   G  +++N
Sbjct: 183 PEVHDAAVATLSIEQFGSTRSMN 205


>gi|157864216|ref|XP_001680820.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124112|emb|CAJ02095.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 545

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 92/270 (34%), Gaps = 81/270 (30%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                +  +++ ++    R           PV+ VP   + ++ G+    Q + LE +  
Sbjct: 163 RGRHIRRKKVIPSRYTAVRCITALAKSLNVPVRFVPRAELVQLCGERRN-QNIVLEASSY 221

Query: 122 LSPTLDAVRNSQ------------------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
               +  +                       ++ L+H+ DP NIG ILR+A  F  D +I
Sbjct: 222 KPQRIRHLGEIWGAEGTAATTTAAASAGLVTVLFLEHIVDPANIGGILRTAFFFGVDHVI 281

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH-------------------S 204
            +++ + S +A ++++++G LEH+   + S  + A   +                    +
Sbjct: 282 LSRQCA-SCTAAVSRTSTGFLEHLRVYQASTSSTA--FLRASQQAWASAAPSLSSSITGA 338

Query: 205 WGFQTIGL-----------SSDSKKPLEQEIKNDKIA----------------------- 230
            G + +               +   P  Q   +D+ A                       
Sbjct: 339 SGLEVVASMVVSRTKVQRRDPNESAPALQSPASDECAPSEVSVESGSDHVRVCAQQPNSC 398

Query: 231 ------LILGAEGKGLRPKTQETATSMAHL 254
                 L+LG E  GL P   +  T +AH+
Sbjct: 399 PPAVRVLLLGNEDAGLPPDLLQWCTHVAHI 428


>gi|260904198|ref|ZP_05912520.1| TrmH family RNA methyltransferase [Brevibacterium linens BL2]
          Length = 214

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG+++R+A AF+   +    R          + A     +   I   ++ D LQ     
Sbjct: 77  NIGSVVRTANAFNAAAVHIVGRR-----RWNRRGAMVTDRYQHIIHHPSIDDLLQWCTDN 131

Query: 206 GFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               IG+    DS  PLE      +  L+ G EG GL  +  + +T++  +   G  +++
Sbjct: 132 DVPLIGIDNFPDS-VPLETYDLPRRSLLLFGQEGPGLSEEAHQASTAVLSIAQYGSTRSM 190

Query: 264 N 264
           N
Sbjct: 191 N 191


>gi|303241069|ref|ZP_07327578.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
           cellulolyticus CD2]
 gi|302591329|gb|EFL61068.1| RNA methyltransferase, TrmH family, group 2 [Acetivibrio
           cellulolyticus CD2]
          Length = 164

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 11/149 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+  A      +        E   L ++       +      + 
Sbjct: 5   IVLVEPEIPQNTGNIVRTCAAVGARLHLIKPLGFSVEDKYLKRAGLDYWNEVDISYYDSF 64

Query: 196 TDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS--- 250
               Q++     G      ++ + K   +    D   L+ G E KGL         +   
Sbjct: 65  ----QELKEKYTGCSFYYATTKAVKNYAEIEYPDNCFLVFGKETKGLPEDIL--VDNREW 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M G I++LN+SN+ A+ +Y T   
Sbjct: 119 CIRIPMIGEIRSLNLSNSVAIIVYETLRQ 147


>gi|258654720|ref|YP_003203876.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
 gi|258557945|gb|ACV80887.1| tRNA/rRNA methyltransferase (SpoU) [Nakamurella multipartita DSM
           44233]
          Length = 172

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 11/134 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSP---SESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           N+G +LR+  A      +    + P   ++   L + +      + ++   ++   L   
Sbjct: 39  NLGTLLRTCDAVGACLAVPRLPWVPEALAQGNTLRRPSC-----VHWV-GRDVGAWLDGH 92

Query: 203 HSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            + G   +   L+ +S +  +  +   +  ++LG E  G+ P+  + A     + M G  
Sbjct: 93  RATGSMVVAVELTDESVRLADLPVARQRTVMLLGHEQSGVPPEGLDRADLAVEIPMVGTG 152

Query: 261 KALNVSNAAAVALY 274
            +LNV+ A ++ LY
Sbjct: 153 HSLNVAVAGSLVLY 166


>gi|254583948|ref|XP_002497542.1| ZYRO0F07942p [Zygosaccharomyces rouxii]
 gi|238940435|emb|CAR28609.1| ZYRO0F07942p [Zygosaccharomyces rouxii]
          Length = 1434

 Score = 81.2 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 5/156 (3%)

Query: 123  SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            S     V  S L++V   V+   N+G I R        G++T        +      A  
Sbjct: 1273 SKPEKTVNRSDLIVVASLVDKAPNLGGICRLCDVLGV-GLLTVPNIKVKNNPQFKNVAVT 1331

Query: 183  ALEHIPYIRIS--NLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGK 238
            A   +P   ++  ++T  +++    G+  IGL  +  S K  +      K  ++LG E  
Sbjct: 1332 ADRWMPIEEVTPQDITSFMKQKKQEGYTLIGLEQTDKSVKLDDHYKFPAKSLVVLGTEAH 1391

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+             +   G+I+++N+  A AV ++
Sbjct: 1392 GIPGHLLSELDLCLEIRQFGVIRSMNIQTATAVIVH 1427


>gi|312114061|ref|YP_004011657.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219190|gb|ADP70558.1| tRNA/rRNA methyltransferase (SpoU) [Rhodomicrobium vannielii ATCC
           17100]
          Length = 175

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 55/130 (42%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR A   +    I            L ++A    + +   R ++    L  ++
Sbjct: 32  PQNTGTILRMAACLNVAVDIIEPCGFDLSDRALRRAALDYYDKVRVQRHASFELFLNNIN 91

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + + +++    P    +  ++  ++ G E  G+  K  E+A     + M   +++L
Sbjct: 92  ASGARLVLMTTKGATPYHDVLYRNEDVILAGRESAGVPDKVHESAHLRVRIPMQQSLRSL 151

Query: 264 NVSNAAAVAL 273
           NV+ + A+ L
Sbjct: 152 NVAVSMAMVL 161


>gi|253577565|ref|ZP_04854877.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843034|gb|EES71070.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 154

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++ A L ++       +      + 
Sbjct: 5   IVLVEPEIPANTGNIARTCAATGIHLHLVRPLGFRTDDATLKRAGLDYWYAVHIEYHDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +   +    G +    ++ +KK        D    + G E KGL P+  E    +   +
Sbjct: 65  QEV--EEKYAGSRFFFATTKAKKRYTDFKFQDGDFFVFGKETKGLPPEILEAHPDTTMRM 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M   +++LN+SN+AA+ +Y      
Sbjct: 123 PMTDKVRSLNLSNSAAIIVYEALRQL 148


>gi|325287947|ref|YP_004263737.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324323401|gb|ADY30866.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 152

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 18/145 (12%)

Query: 140 HVND---PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            + +   P N+G + R+A       I T         A  A     A++ IPY   +   
Sbjct: 13  GIQNGKTPENLGVLWRTAQNLGASFIFTIGNR----YAKQACDTHNAVKSIPYYHYNTFN 68

Query: 197 DALQKMHSW---GFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           D      +    G + +G+  D +   LE      +   +LGAE  GL  +  E +  + 
Sbjct: 69  DF----KNNIPVGTRIVGVELDDTAVDLETFEHPRRCVYLLGAEDHGLSKEAIEESHFLV 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277
                  + +LNV+ A ++ LY  Q
Sbjct: 125 K--FKSTL-SLNVAVAGSIVLYDRQ 146


>gi|242022908|ref|XP_002431879.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212517220|gb|EEB19141.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 364

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 79  ARLDWDANLPHPFPVKT--VPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLL 135
           +RL    NL     V+   V  + + +I    A  QG+      P     ++  +   L 
Sbjct: 101 SRLSDIENLKLSENVRKCQVDYKQL-RIWSDVATSQGVIAVFDLPDQKKIINKFKTVPLT 159

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D++ +P N+G+ILR A A  C  +I T       +A + +SA+G    +P       
Sbjct: 160 IICDNIREPGNLGSILRVAGAVGCKKVIMTTGCVDLWNAKVIRSAAGIHFRLPISSNVEW 219

Query: 196 TD 197
            D
Sbjct: 220 DD 221



 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 226 NDKIALILGAEGKGLRPKT----QETATSMAHLHMPGIIKALNVSNA 268
           N+ I +I+G E  G+        +        + +   + +LN S A
Sbjct: 309 NNSIVIIIGGESYGISEDAYKFGERRKGLRVTIPLLNNVDSLNSSVA 355


>gi|329890251|ref|ZP_08268594.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845552|gb|EGF95116.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 151

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS---GALEHIPYIRISNLTDALQ 200
           PHN+GA +R +  F  + +   +  S +      K A+   G L H+   R ++  DA Q
Sbjct: 11  PHNVGACIRLSACFDVE-LHVIQPTSFNFDDRAMKRAALDYGPLSHM--TRHADW-DAFQ 66

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +  + G + +  ++ + +PL   +      L+ G E  G        A +  ++ +    
Sbjct: 67  RDRAPG-RLVLFTTRAAEPLTDFVFQPDDVLLFGKESAGSPDYVHAAADARIYIPIRPEA 125

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++LN+S +A + L+       +
Sbjct: 126 RSLNLSVSAGIGLHEALRQMNE 147


>gi|170584264|ref|XP_001896925.1| RNA methyltransferase, TrmH family protein [Brugia malayi]
 gi|158595702|gb|EDP34233.1| RNA methyltransferase, TrmH family protein [Brugia malayi]
          Length = 1402

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 2/148 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEHI 187
           +    L++V   ++   N+G I R+      + +I        +   +A S +S    ++
Sbjct: 655 LEGVSLIVVASLLDKAANLGGICRTCEVLGVEKLIVADLAKIKDRDFMALSLSSENWMNL 714

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
              R   L + L    + G+  IG   + +  PL +     K+ L+LG E +G+      
Sbjct: 715 EESRPEELPNLLLSFRNSGYVIIGAEQTTNSTPLHKIRFPSKMVLLLGNEKEGIPMHLLG 774

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALY 274
                  +   G  ++LNV    A+ +Y
Sbjct: 775 YLDKTVEVLQIGHTRSLNVHVTGALLIY 802


>gi|56752229|ref|YP_172930.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|81300683|ref|YP_400891.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
           7942]
 gi|56687188|dbj|BAD80410.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
 gi|81169564|gb|ABB57904.1| RNA methyltransferase TrmH, group 2 [Synechococcus elongatus PCC
           7942]
          Length = 156

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +            L ++      ++      + 
Sbjct: 4   VVLYQPEIPPNTGNIARTCAATDTPLHLIEPLGFELSDRYLKRAGLDYWPYVQLTTHPDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           +   Q+    G + I  ++  +             L+ G E  GL      +      + 
Sbjct: 64  SVFRQQQQQQGGRLIAFTTKGELNYLDCDFQATDWLLFGRETSGLPEDVLASCDHRVRIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNH 279
            P   +++LN+S + A+ L+  +  
Sbjct: 124 TPQAGVRSLNLSVSVAIGLFEARRQ 148


>gi|220931942|ref|YP_002508850.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
           H 168]
 gi|219993252|gb|ACL69855.1| RNA methyltransferase, TrmH family, group 2 [Halothermothrix orenii
           H 168]
          Length = 162

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +        +   L ++     + +      +L
Sbjct: 3   IVLVEPEIPQNTGNIARTCAVTGSSLHLIEPLGFSIDDRYLKRAGLDYWDKLDIYYYDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254
            + ++K     F     ++ + K  +     +   ++ G E  GL     +        +
Sbjct: 63  EELMKKYKDSNF--YFATTKAPKSYDIVSYQENDFIVFGKETAGLPESLLKNNIENCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M    ++LN+SN+ A+ LY       
Sbjct: 121 PMKDNTRSLNLSNSVAIILYEALRQLN 147


>gi|146071500|ref|XP_001463133.1| hypothetical protein [Leishmania infantum]
 gi|134067216|emb|CAM65483.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322496565|emb|CBZ31635.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 545

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 92/268 (34%), Gaps = 77/268 (28%)

Query: 62  NNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPL 121
                +  +++ ++    R           PV+ VP   + ++ G+    Q + LE +  
Sbjct: 163 RGRHIRRKKVIPSRYTAVRCITALAKSLNVPVRFVPRAELVQLCGERRN-QNIVLEASSY 221

Query: 122 LSPTLDAVRNSQ------------------LLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
               +  +                       ++ L+ + DP NIG ILR+A  F  D +I
Sbjct: 222 KPQRIRHLGEIWGAEGAAAKTTAAASAGLVTVLFLERIVDPANIGGILRTAFFFGVDHVI 281

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRISN------------LTDALQKMH-----SWG 206
            +++ + S +A ++++++G LEH+   + S                A+  +      + G
Sbjct: 282 LSRQCA-SCTAAVSRTSTGFLEHLRVYQASTSSAAFLRASRQVWASAVPSLSSSITGASG 340

Query: 207 FQTIGL-----------------------SSDSKKPLEQEIKNDK--------------- 228
            + I                         +SD   P E  +++                 
Sbjct: 341 LEVIASMVVSRTRAQRRDRNESAPALQFPASDESAPSEVSVESGSDHVRLFAQQPNSCLP 400

Query: 229 --IALILGAEGKGLRPKTQETATSMAHL 254
               L+LG E  GL P   +  T +AH+
Sbjct: 401 AVRVLLLGNEDAGLPPDLLQWCTHVAHI 428


>gi|254714766|ref|ZP_05176577.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M644/93/1]
 gi|254717827|ref|ZP_05179638.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M13/05/1]
          Length = 159

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 2   ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRTLKRAGMDYLEQAALTRH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 62  PDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 121

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 122 LIPMVRSARSLNLAVSVA 139


>gi|261752835|ref|ZP_05996544.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261742588|gb|EEY30514.1| tRNA/rRNA methyltransferase [Brucella suis bv. 5 str. 513]
          Length = 171

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 14  ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 74  PDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 133

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 134 LIPMVRSARSLNRAVSVA 151


>gi|17986753|ref|NP_539387.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|225627988|ref|ZP_03786024.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|237815940|ref|ZP_04594937.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260884279|ref|ZP_05895893.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261222685|ref|ZP_05936966.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261315717|ref|ZP_05954914.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261318155|ref|ZP_05957352.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261755493|ref|ZP_05999202.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261758724|ref|ZP_06002433.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265989186|ref|ZP_06101743.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991600|ref|ZP_06104157.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995438|ref|ZP_06107995.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998649|ref|ZP_06111206.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|265999372|ref|ZP_05466026.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|17982380|gb|AAL51651.1| ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|225617151|gb|EEH14197.1| ribosomal RNA methyltransferase [Brucella ceti str. Cudo]
 gi|237789238|gb|EEP63449.1| ribosomal RNA methyltransferase [Brucella abortus str. 2308 A]
 gi|260873807|gb|EEX80876.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260921269|gb|EEX87922.1| tRNA/rRNA methyltransferase [Brucella ceti B1/94]
 gi|261297378|gb|EEY00875.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261304743|gb|EEY08240.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261738708|gb|EEY26704.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|261745246|gb|EEY33172.1| tRNA/rRNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262553273|gb|EEZ09107.1| tRNA/rRNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766551|gb|EEZ12340.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002384|gb|EEZ14959.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093517|gb|EEZ17551.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|264661383|gb|EEZ31644.1| tRNA/rRNA methyltransferase [Brucella pinnipedialis M292/94/1]
          Length = 171

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 14  ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 74  PDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 133

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 134 LIPMVRSARSLNLAVSVA 151


>gi|163814594|ref|ZP_02205983.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759]
 gi|158450229|gb|EDP27224.1| hypothetical protein COPEUT_00745 [Coprococcus eutactus ATCC 27759]
          Length = 166

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     + +      N 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVAAGARLHLIEPLGFQINEKQLKRAGLDYWDKLDVTTYVNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L    + G +    ++ ++K        D   ++ G E  G+  +   +   +   +
Sbjct: 64  EDFLA--KNPGAKIYMATTKARKKYTDVRFEDDAYIMFGKESAGIPEEILVDYKDTAIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+ N+ A+ LY     
Sbjct: 122 PMFPDIRSLNLGNSVAIVLYEALRQ 146


>gi|295092497|emb|CBK78604.1| Predicted rRNA methylase (SpoU class) [Clostridium cf.
           saccharolyticum K10]
          Length = 180

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            + ++     + +     S+ 
Sbjct: 3   IVLYEPEMPANTGNIGRTCVATGTRLHLIEPLGFKLSEKAVKRAGLDYWDKLDVTVYSDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L    + G +    ++ +     +        ++ G E +G+      +   +   +
Sbjct: 63  QDFLD--RNPGAKIYMATTKAPNVYTEASYEPDCYIMFGPESRGIPEDILVQHQETCVRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+SN+ ++ LY     
Sbjct: 121 PMWGDIRSLNLSNSVSIILYEALRQ 145


>gi|86607760|ref|YP_476522.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556302|gb|ABD01259.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 152

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A      +            L ++     +H+   R 
Sbjct: 2   PFHVVLVAPEIPANTGNIARTCAATDTPLHLVDPLGFRLSDRYLKRAGLDYWQHVQLYRY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            + +  +Q      F     S   K    +        L+ G+E +GL P   ET     
Sbjct: 62  PSWSALVQAHPEARFWCF--SVRGKALYTEVTYQPGDWLVFGSESRGLDPLFLET-YPSV 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + + G +++LN+SNA A+AL+     
Sbjct: 119 RIPLRGPVRSLNLSNAVAIALFEALRQ 145


>gi|257069691|ref|YP_003155946.1| rRNA methylase [Brachybacterium faecium DSM 4810]
 gi|256560509|gb|ACU86356.1| rRNA methylase [Brachybacterium faecium DSM 4810]
          Length = 208

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
               +   LD  R+  L + ++++    NIG+++R+A AF+        R          
Sbjct: 42  RREAIVAELDTHRH-DLHVAIENLEHDANIGSVVRTANAFAVGAFHIVGRR-----RWNR 95

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAE 236
           + A     +   I   +    +      G   + +   +   P+E+        L++G E
Sbjct: 96  RGAMVTDRYQHEIHHPDAAHLIAWAREQGRPLVAIDLVEGAVPIERTALPHNAVLVVGQE 155

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNV 265
           G G+ P+    +  +  +   G  +++NV
Sbjct: 156 GPGVSPELLAASELVVGITQFGSTRSINV 184


>gi|183602741|ref|ZP_02964104.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683159|ref|YP_002469542.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241191493|ref|YP_002968887.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196898|ref|YP_002970453.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183217979|gb|EDT88627.1| hypothetical protein BIFLAC_00880 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620809|gb|ACL28966.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240249885|gb|ACS46825.1| hypothetical protein Balac_1478 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251452|gb|ACS48391.1| hypothetical protein Balat_1478 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289177618|gb|ADC84864.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295794485|gb|ADG34020.1| hypothetical protein BalV_1432 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 269

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 41/199 (20%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF+ + +     +  +    L     
Sbjct: 67  IKADLDARGRHMFEVAVENWTHDFNIGSMVRTANAFTANRVHIVGPHKWNRKGALMTELY 126

Query: 182 GALEHIPYIR--ISNLTDALQKMH------------------------------------ 203
             + H P IR  + +    + +                                      
Sbjct: 127 QHVVHHPSIRACVDDWHARIAQERTEARQRIETAQTAAQAGVLSPADAARELVYARHDLN 186

Query: 204 -SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            +   + I +   D   P+E     ++  L+ GAEG GL  K  E A  + ++   G ++
Sbjct: 187 IAQNAKVIAMDIIDGAVPMETYRFPERCLLLFGAEGPGLSKKALELADDVVYISQFGSVR 246

Query: 262 ALNVSNAAAVALY-ITQNH 279
           ++N   AAAV ++     H
Sbjct: 247 SINAGAAAAVTMHAWIAQH 265


>gi|319405253|emb|CBI78858.1| RNA methyltransferase [Bartonella sp. AR 15-3]
          Length = 158

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 45/126 (35%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR +  F     I            L ++    LE     R  +  + +  M  
Sbjct: 14  GNTGTILRLSACFGLHVHIIEPAGFDISDRNLKRAGMDYLERASLERHLDWQNFIDTMQR 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  + + LS+ +K    +        L+ G E  G+     + A     + M    ++LN
Sbjct: 74  FNRRLLLLSTKAKTYYTEICYQKNDVLLFGRESAGVPDYVYKAADCTLTIPMLPHARSLN 133

Query: 265 VSNAAA 270
           ++ + A
Sbjct: 134 LAISVA 139


>gi|283796619|ref|ZP_06345772.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
 gi|291076043|gb|EFE13407.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
          Length = 163

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 11/153 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            + ++     + +     S+ 
Sbjct: 3   IVLYEPEMPANTGNIGRTCVATGTRLHLIEPLGFKLSEKAVKRAGLDYWDKLDVTVYSDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D L    + G +    ++ +     +        ++ G E +G+         ET    
Sbjct: 63  QDFLD--RNPGAKIYMATTKAPNVYTEASYEPDCYIMFGPESRGIPEDILVKNQETC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYI--TQNHFAK 282
             + M G I++LN+SN+ ++ LY    QN F K
Sbjct: 118 VRIPMWGDIRSLNLSNSVSIILYEALRQNGFEK 150


>gi|146329702|ref|YP_001209617.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|146233172|gb|ABQ14150.1| rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
          Length = 159

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L H   P N G I+R          I        +   L ++     E        N 
Sbjct: 3   VALFHPQIPPNTGNIIRLCANTGVKLHIIHPTGFVWDDKRLRRAGLDYAEFAEITHHENW 62

Query: 196 TDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETA-TSMA 252
           +D  +            L++  K+ +     +    L+ G+E  GL  +   E A     
Sbjct: 63  SDFARYFPKESCIW--ALTTRGKRCVYDAAFSPNDVLLFGSETSGLTEEVHAEIAPEHKL 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SN+ A+ LY     
Sbjct: 121 RLPMQACSRSLNLSNSVAIVLYEALRQ 147


>gi|220929686|ref|YP_002506595.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10]
 gi|220000014|gb|ACL76615.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulolyticum H10]
          Length = 164

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+  A      +        E   L ++             +NL
Sbjct: 5   IVLVEPEIPQNTGNIVRTCAATGSVLHLVGPLGFSIEDKYLKRAGLDYWNEADVRYYNNL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +   K  + G      ++ +          D   ++ G E  GL  +  +        +
Sbjct: 65  DEF--KKKNVGKTFYYSTTKAVNNYCNVNFEDDCFIVFGKETAGLPEELLKGNKEYCIRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+SN+AA+ LY     
Sbjct: 123 PMKNGIRSLNLSNSAAIVLYEALRQ 147


>gi|225574098|ref|ZP_03782709.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038698|gb|EEG48944.1| hypothetical protein RUMHYD_02163 [Blautia hydrogenotrophica DSM
           10507]
          Length = 166

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 58/150 (38%), Gaps = 5/150 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L +VL     P N G I R+ VA      +            + ++     + +    
Sbjct: 2   AKLNIVLHEPEIPANTGNIGRTCVATGTRLHLIEPLGFRLNEKAIKRAGMDYWKDLDVTT 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETAT 249
             +  D L+   + G +    ++ + +        +   ++ G E  G+  +      AT
Sbjct: 62  YLDYNDFLE--KNPGAKIYYATTKAPQRYTDVRFEEDCYIMFGKESAGIPEEILLENQAT 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +   + M G I++LN+SN+ A+ LY     
Sbjct: 120 A-IRIPMIGDIRSLNLSNSVAIVLYEALRQ 148


>gi|282863274|ref|ZP_06272333.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
 gi|282561609|gb|EFB67152.1| tRNA/rRNA methyltransferase (SpoU) [Streptomyces sp. ACTE]
          Length = 243

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD +R     + +++     NIG+++R+A AF    +    R          
Sbjct: 77  TREAIVADLD-LRRHDFHVAVENWGHDFNIGSVVRTANAFLAKEVHIVGRR-----RWNR 130

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +       +  D      + G   IG+       PLE+     +  L+ G E
Sbjct: 131 RGAMVTDRYQHVRHHPDTADLTAWAAAEGLPVIGIDNLPGAVPLERTELPRRCVLLFGQE 190

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G GL  + +  A+ +  +   G  +++N
Sbjct: 191 GPGLTEEARAHASMVCSIAQFGSTRSIN 218


>gi|291294429|ref|YP_003505827.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
 gi|290469388|gb|ADD26807.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus ruber DSM 1279]
          Length = 160

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A   +  +         SA L ++       + Y+   + 
Sbjct: 4   VVLYQPEIPQNAGNIARTCAATGAELHLIRPLGFQWNSAKLRRAGLDYWPEVDYVLHDSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+ +   G +    SS   +   +        L+ G E +GL  +  E       + 
Sbjct: 64  RAFLETLPPDG-RIWAFSSKVSRLYTEVRYQPGDYLLFGPESRGLPSEVLERFPG-VTIP 121

Query: 256 MPGIIK-ALNVSNAAAVALYITQNHFA 281
           MPG    +LN++ A  V LY       
Sbjct: 122 MPGRGGRSLNLAVAVGVGLYEALRQVG 148


>gi|205374872|ref|ZP_03227664.1| rRNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
          Length = 160

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       +E  +L ++     EH+  +   +L
Sbjct: 8   VVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTEDKMLRRAGLDYWEHVTIVYYDSL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA-TSM 251
            +  +   + G +   L+   + P         +     I G E  GL     E      
Sbjct: 68  DEFFE--KNAGGEFFYLTKYGEIPHSDFDYSSVDKDYFFIFGRETTGLPKDVIENNKDRA 125

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 126 LRIPMNENVRSLNLSNTAAILVYEALRQ 153


>gi|294659853|ref|XP_462280.2| DEHA2G17050p [Debaryomyces hansenii CBS767]
 gi|199434283|emb|CAG90782.2| DEHA2G17050p [Debaryomyces hansenii]
          Length = 1441

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 5/153 (3%)

Query: 131  NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             S L++V   V+ P N+G I R        G++T    +          A  A   +P +
Sbjct: 1288 RSDLIVVSSLVDKPPNLGGICRLCDVLGA-GLLTLNDINVKNHPQFKNVAVTADYWMPMV 1346

Query: 191  RI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK-NDKIALILGAEGKGLRPKTQE 246
             +  S +   L++    G+  IGL  +D    L  ++K   K  ++LG E +G+      
Sbjct: 1347 EVKPSEIICFLKEKKKEGYTLIGLEQTDKSVELNSDLKFPQKSLILLGREKEGVPGDLLA 1406

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                   +   G+I+++N+  A A+ ++   + 
Sbjct: 1407 ELDFCVEIKQVGVIRSMNIQTATAIIVHAYSSQ 1439


>gi|146301635|ref|YP_001196226.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146156053|gb|ABQ06907.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 152

 Score = 80.5 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 140 HVND---PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            + +   P N+G + RSA       I T         A  A     A++ IPY       
Sbjct: 13  GIQNGKTPENLGVLWRSAQNLGASFIFTIGNR----YAKQACDTHDAVKAIPYFHYETFE 68

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              + +   G + +G+  S+    LE      +   +LGAE  GL  K  +    +    
Sbjct: 69  AFFENLPK-GARLVGVELSEKAVDLETFEHPRRCVYLLGAEDHGLSKKAMDKCHHLVK-- 125

Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282
                K+LNV+ A  V +Y    + +K
Sbjct: 126 -FKSEKSLNVAVAGTVVMYD--RNLSK 149


>gi|187736063|ref|YP_001878175.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426115|gb|ACD05394.1| tRNA/rRNA methyltransferase (SpoU) [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 154

 Score = 80.5 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 3/151 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +  +V+ H   PHN GA  R A+A      +        +   + ++       +   
Sbjct: 2   QPRFHIVMFHPEIPHNTGAAGRLALATGSRLHLIKPLGFSLDEKHVRRTGLDYWAKVDLH 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETAT 249
              +L + L++  + G Q   LS+ + +     + +    L+ G E +GL     +E A 
Sbjct: 62  VWDSLEE-LKQAAAPGAQFWYLSTKAPRSHWDAVFHAGDYLVFGPESRGLPESMLREHAD 120

Query: 250 SMAHLHMPG-IIKALNVSNAAAVALYITQNH 279
           +   + MPG   ++LN+S A AV LY     
Sbjct: 121 TALTIPMPGEGARSLNLSTAVAVVLYEGLRQ 151


>gi|255721203|ref|XP_002545536.1| hypothetical protein CTRG_00317 [Candida tropicalis MYA-3404]
 gi|240136025|gb|EER35578.1| hypothetical protein CTRG_00317 [Candida tropicalis MYA-3404]
          Length = 1434

 Score = 80.5 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 5/161 (3%)

Query: 123  SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            S  +  V  S+L++V   V+ P N+G I R        G++T       +       A  
Sbjct: 1273 SSRIAEVERSELIVVSSLVDKPPNLGGICRLCDVLGA-GLLTLHDIEVKKHPHFKTVAVT 1331

Query: 183  ALEHIPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK-NDKIALILGAEGK 238
            A   +P I +   N+ D L      G+  IGL  +D    L  ++K   K  +++G E +
Sbjct: 1332 ADHWMPMIEVKMENIRDYLLDKKREGYTLIGLEQTDKSVELNNDLKFPKKSLILIGKERE 1391

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            G+             +   GI++++N+  A A+ ++   + 
Sbjct: 1392 GIPGDLLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1432


>gi|124025726|ref|YP_001014842.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. NATL1A]
 gi|123960794|gb|ABM75577.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. NATL1A]
          Length = 166

 Score = 80.5 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 10/141 (7%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+ +AF+    I        E   L ++      H+      +         
Sbjct: 19  PQNTGTIGRTCLAFNMSLDIIKPTGFSFEDKYLKRAGLDYWPHVDVHLYESFDQYKNSFK 78

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP------ 257
           +   + I  +  S   +   I  D   L+ G E  GL          +A + MP      
Sbjct: 79  NS--RIIAFTKKSNNLISNIIYKDTDILLFGREDTGLPESIINKCEIVAGIPMPGGENQL 136

Query: 258 --GIIKALNVSNAAAVALYIT 276
             G +++LN+S A+ +  Y  
Sbjct: 137 KTGGVRSLNLSVASGIVCYYA 157


>gi|302872532|ref|YP_003841168.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575391|gb|ADL43182.1| RNA methyltransferase, TrmH family, group 2 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 154

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R+         +        E   L ++     +++      +L
Sbjct: 5   IVLHEPEIPYNTGNIARTCACTGSKLHLIEPLGFSLEDKYLKRAGLDYWQYLDVKIYRDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            D  +   + G      S+  K+   Q    D   L+ G E  GL     ++       +
Sbjct: 65  NDFFE--KNRGANIFYFSTKGKQYYTQAPYEDNCYLMFGKETAGLPKWLIEQNIHRTYRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN+ A+ LY       
Sbjct: 123 PMISDVRSLNLSNSVAIVLYEVLRQLG 149


>gi|298370452|ref|ZP_06981768.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281912|gb|EFI23401.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 154

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +S+ + ++     E        
Sbjct: 2   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++  K   ++         + G E +GL  +  ++  A   
Sbjct: 62  NFEDCLKAL--EGRRIFALTTKGKTRPDEASFKKGDVFLFGPETRGLPAEILDSLPAERK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN AAV L+     
Sbjct: 120 LRLPMRPGSRSMNLSNTAAVMLFEAWRQ 147


>gi|325479544|gb|EGC82640.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 152

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G I R+ V       +            L ++     EH+  +   ++
Sbjct: 4   IVLIAPEHPGNVGNIGRTCVLTESRLHLIRPFKFDFSDRFLKRAGIDYWEHVDLVIHDSI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + ++ +    F  +   SD K+  +   K+    LI G E +G+  K   E +  +  +
Sbjct: 64  EEFMEYIKDKRFFFVETGSD-KRYTDVSFKDGDY-LIFGREKEGIDQKLLDEYSKQVITI 121

Query: 255 HMPGIIK-ALNVSNAAAVALYITQNH 279
            M   I  +LN++N+ ++ LY     
Sbjct: 122 PMTKKIDRSLNLANSVSIILYEALRQ 147


>gi|260752590|ref|YP_003225483.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551953|gb|ACV74899.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 152

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 3/135 (2%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+A  F     I            L ++     +  P +R ++    L     
Sbjct: 12  GNVGTILRTAACFGVGVDIIEPCGFAFSDRALKRAGMDYAKIAPPVRHNDWNSFLSARPE 71

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              + + L++    PL +        L+ G+E  G      + A+    + +    ++LN
Sbjct: 72  R--RVL-LTTAGDIPLPEMTFQPDDILLFGSESAGAPDFVHQAASHQVRIPLLADFRSLN 128

Query: 265 VSNAAAVALYITQNH 279
           ++ +A +AL      
Sbjct: 129 IAVSAGIALAEALRQ 143


>gi|330801499|ref|XP_003288764.1| hypothetical protein DICPUDRAFT_153035 [Dictyostelium purpureum]
 gi|325081198|gb|EGC34723.1| hypothetical protein DICPUDRAFT_153035 [Dictyostelium purpureum]
          Length = 1628

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 68/150 (45%), Gaps = 4/150 (2%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             +++V   V+   N+  ++R++  F+ + ++ +     +++A    + + A + +P   +
Sbjct: 1476 SVILVASFVDKIPNLAGLVRTSEIFNIECLVVSDMKILNDTAFQQITVT-AEKWLPMEEV 1534

Query: 193  --SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L   L    S G+  +G+  + S   L +    +K  L+LG E +G+  +      
Sbjct: 1535 PEESLKQYLLGKKSQGYSLLGIEQTSSSVQLNKFDFPEKSVLVLGKEKEGIPTEFINLLD 1594

Query: 250  SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +   G+I++LNV  + ++ ++     
Sbjct: 1595 KCIEIPQLGVIRSLNVHVSGSILMWEYTKQ 1624


>gi|291531994|emb|CBK97579.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum 70/3]
          Length = 168

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         I        +   L  +      ++       L
Sbjct: 5   IVLVEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITYYDGL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D  ++     F         +         DK  ++ G E KGL  +      +     
Sbjct: 65  DDFFERNKDSEFFYFTT--KGRNTYCDAEYKDKTYIVFGREDKGLPEELLFHNKQHC--- 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M   +++LN+SN+ A+  Y     + 
Sbjct: 120 VRIPMGSNMRSLNLSNSVAIGAYEVLRQWG 149


>gi|284799524|ref|ZP_05984222.2| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
           NJ9703]
 gi|284798134|gb|EFC53481.1| RNA methyltransferase, TrmH family, group 2 [Neisseria subflava
           NJ9703]
          Length = 157

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +S+ + ++     E        
Sbjct: 5   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFAKLAVHE 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++    +   L+ G E +GL  +  ++  A   
Sbjct: 65  NFEDCLKAL--EGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEVLDSLPAGQK 122

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             L M    +++N+SN  AV L+    QN FA
Sbjct: 123 IRLPMMPDSRSMNLSNTVAVILFEAWRQNGFA 154


>gi|56551848|ref|YP_162687.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761830|ref|ZP_04759916.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56543422|gb|AAV89576.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373744|gb|EER63304.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 152

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 3/135 (2%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ILR+A  F     I            L ++     +  P +R ++    L     
Sbjct: 12  GNVGTILRTAACFGVGVDIIEPCGFAFSDRALKRAGMDYAKIAPPVRHNDWNSFLSTRPE 71

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              + + L++    PL +        L+ G+E  G      + A+    + +    ++LN
Sbjct: 72  R--RVL-LTTAGDIPLPEMTFQPDDILLFGSESAGAPDFVHQAASHQVRIPLLADFRSLN 128

Query: 265 VSNAAAVALYITQNH 279
           ++ +A +AL      
Sbjct: 129 IAVSAGIALAEALRQ 143


>gi|167949868|ref|ZP_02536942.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 74

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 35/56 (62%)

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +P+I+++NL+  L+ +   G   IG + +++  L Q      +A+++G+EGKGL P
Sbjct: 9   VPFIQVTNLSRTLKWLQQQGVWLIGTAGEAESELYQADLKGPLAIVMGSEGKGLAP 64


>gi|154505239|ref|ZP_02041977.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149]
 gi|153794437|gb|EDN76857.1| hypothetical protein RUMGNA_02753 [Ruminococcus gnavus ATCC 29149]
          Length = 166

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            L ++       +      N 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKALKRAGMDYWADLDVRTYINF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+   + G +    ++ + K   +        ++ G E  G+  +           +
Sbjct: 64  EDFLE--KNPGAKIYMATTKAPKVYTEVQYEPDCYIMFGKESAGIPEEILVNHKEDCVRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M G I++LN+ N+ A+ LY    Q +FA
Sbjct: 122 PMVGDIRSLNLGNSVAIILYEALRQQNFA 150


>gi|308047804|ref|YP_003911370.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799]
 gi|307629994|gb|ADN74296.1| tRNA/rRNA methyltransferase (SpoU) [Ferrimonas balearica DSM 9799]
          Length = 154

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N GAI+R      C   +        +   L ++     E     R  +    L+ M   
Sbjct: 14  NTGAIIRLCANNGCRLHLIEPLGFDMDEKKLRRAGLDYAELTTVTRYPDYASFLEAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G +   L++   +P  +        L+ G E +GL    +E    +    + M    ++L
Sbjct: 72  GRRVFALTTKGSRPHTEPQYQAGDVLLFGPESRGLPEAVREAIPTSQRIRIPMKADARSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N++NA ++  Y      
Sbjct: 132 NLANAVSIVSYEAWRQL 148


>gi|297564496|ref|YP_003683468.1| tRNA/rRNA methyltransferase SpoU [Meiothermus silvanus DSM 9946]
 gi|296848945|gb|ADH61960.1| tRNA/rRNA methyltransferase (SpoU) [Meiothermus silvanus DSM 9946]
          Length = 153

 Score = 80.1 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 3/149 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I R+  A + +  +            L ++     +H+ Y+   
Sbjct: 2   LKVVLYQPEIPQNAGNIARTCAAAAAELHLIRPLGFRWGDPKLKRAGLDYWDHLHYVLHD 61

Query: 194 NLTDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           +    ++K    +   +    SS + +   +        L+ G E +GL  +  E     
Sbjct: 62  SWEAFVEKALAGARQSRVWAFSSKATQDYTRVPYQPGDYLLFGPETRGLPKEVLEQF-PS 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + MPG +++LN++ +  + L+      
Sbjct: 121 VTIPMPGKVRSLNLAVSVGIGLFEALRQL 149


>gi|116669083|ref|YP_830016.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116609192|gb|ABK01916.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 224

 Score = 80.1 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 9/143 (6%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD+ R+    + +++     NIG ++R+A AF    +    R          + A   
Sbjct: 67  ADLDSKRH-DFHIAIENWQHDLNIGTVVRTANAFLAKEVHIIGRR-----RWNRRGAMVT 120

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLR 241
             +        + D +      G   IG+    DS  PLE         L+ G EG GL 
Sbjct: 121 DRYQHVRHHPTVEDFVAWAQGEGLAIIGIDIFPDS-VPLETYDLPKNCVLVFGQEGPGLT 179

Query: 242 PKTQETATSMAHLHMPGIIKALN 264
           P+  E A     +   G  +++N
Sbjct: 180 PEVHEAAVDTLSIEQFGSTRSIN 202


>gi|224826042|ref|ZP_03699145.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum
           2002]
 gi|224601679|gb|EEG07859.1| RNA methyltransferase, TrmH family, group 2 [Lutiella nitroferrum
           2002]
          Length = 154

 Score = 80.1 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G ++R      C+  +      P + A L ++     E+   +   
Sbjct: 2   FTVVLFQPEIPPNTGNVIRLCANTGCELHLVKPLGFPLDDAKLRRAGLDYHEYARLVVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N       +   G +    ++      +Q        L+ G E +GL  +  ++  A   
Sbjct: 62  NWEACRTAL--SGRRIFAATTKGATRHDQTAFRPGDVLLFGPESRGLPQEVLDSFPADRR 119

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             L M    +++N+SNA AV ++    QN FA
Sbjct: 120 VRLPMQPESRSMNLSNAVAVMVFEAWRQNDFA 151


>gi|256393456|ref|YP_003115020.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
 gi|256359682|gb|ACU73179.1| tRNA/rRNA methyltransferase (SpoU) [Catenulispora acidiphila DSM
           44928]
          Length = 174

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 13/135 (9%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEHIP--YIRISNLTDALQKM 202
           N+G +LR+  A            +      + ++ A G     P       +    L   
Sbjct: 41  NLGTLLRTCDAVGA-------CLAVPRLPWVPEALARGNTLRHPACIHWTGDQLSWLTHQ 93

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           H+    TI  +  + + L          +  L+LG E  G+ P           + M G 
Sbjct: 94  HTRTDTTIVGAELADEALRLADLPPARNRTVLVLGHERDGIPPDAVALLDLAVEIPMVGT 153

Query: 260 IKALNVSNAAAVALY 274
             +LNV+ A ++ LY
Sbjct: 154 GASLNVAVAGSLVLY 168


>gi|316932736|ref|YP_004107718.1| tRNA/rRNA methyltransferase SpoU [Rhodopseudomonas palustris DX-1]
 gi|315600450|gb|ADU42985.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           DX-1]
          Length = 151

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  LR     + +  I      P+      +S    L+ +  +R  +     Q   
Sbjct: 11  PQNTGTTLRFCACLNVEAHIIEPAGFPTSDRHFRRSGMDYLDQVSIVRHDSWLKFEQWRE 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + I L++  ++P  ++       L+LG E  G+       A +   + M   +++L
Sbjct: 71  NAGCRLILLTTKGERPYFEQRYQPTDVLMLGRESAGVPDDVAAAADARVVIPMQPGLRSL 130

Query: 264 NVSNAAAVA 272
           NV+ AAA+ 
Sbjct: 131 NVAMAAAMV 139


>gi|34499838|ref|NP_904053.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34105688|gb|AAQ62042.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 154

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 4/150 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G ++R      C+  +      P E A L ++     E+   +   
Sbjct: 2   FTVVLFQPEIPPNTGNVIRLCANTGCELHLVKPMGFPLEDAKLRRAGLDYHEYARVVVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           +    L+ +     +    ++      ++         + G E +GL         A   
Sbjct: 62  DWDACLRTLQGR--RIFAATTKGATRHDRISYQPGDVFLFGPESRGLPQDVLAALPAQQR 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             L M    ++LN+SNA AV ++       
Sbjct: 120 IRLPMRPESRSLNLSNAVAVTVFEAWRQLG 149


>gi|197119687|ref|YP_002140114.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem]
 gi|197089047|gb|ACH40318.1| SpoU-class rRNA methyltransferase CspR [Geobacter bemidjiensis Bem]
          Length = 158

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R   A      +  K    ++   L ++       +    
Sbjct: 5   KPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEVEIHY 64

Query: 192 ISNLTDALQKMHSW--GFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQET- 247
             +L      +     G + +  S  ++K             ++ G E KGL  +  E  
Sbjct: 65  WPDLP----ALKQAYPGSRFVYTSKKAEKSYLAFTFLYGDF-IVFGKETKGLPEELIEAN 119

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A +   + +PG +++LN+S +A + LY     
Sbjct: 120 AQTSVRIPIPGKVRSLNLSTSAGIVLYEALRQ 151


>gi|224533032|ref|ZP_03673638.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23]
 gi|224512026|gb|EEF82421.1| tRNA/rRNA methyltransferase [Borrelia burgdorferi WI91-23]
          Length = 118

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 202 MHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           M S G+  +  S + K   LE    N+K+A+  G E  GL  +    A     + M G  
Sbjct: 1   MKSDGYSIVATSLNPKSINLENLTINNKMAIFFGTELTGLSAEVLGAADLYVKIPMHGFT 60

Query: 261 KALNVSNAAAVALYITQNHFAK 282
           ++ N+S A A+ +Y       K
Sbjct: 61  QSYNISVAVAIVMYSLLMRLRK 82


>gi|167463581|ref|ZP_02328670.1| predicted rRNA methylase [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383783|ref|ZP_08057534.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151995|gb|EFX44938.1| rRNA methylase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 154

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++   L ++       +      + 
Sbjct: 5   IVLVEPEIPANTGNISRTCAATGTYLHLVRPLGFKTDDKTLKRAGLDYWPSVKLEYHDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            +   +    G +    ++ + +     +  D    + G E KGL P    +   +   L
Sbjct: 65  EEV--EQKYAGHRFFLATTKASRTYTDFVFRDGDFFVFGKETKGLSPNILGQYPDTKMRL 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M   +++LN+SN+AA+ LY      
Sbjct: 123 PMSNAVRSLNLSNSAAIVLYEGLRQI 148


>gi|149192621|ref|ZP_01870771.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1]
 gi|148833544|gb|EDL50631.1| rRNA methylase, SpoU family protein [Vibrio shilonii AK1]
          Length = 158

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       +  +        E   + ++     +     R  +    +  +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVKRHKDYAAFIAYLEEN 73

Query: 206 G--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
              ++    ++ +              L+ G E +GL  +  E+        + M    +
Sbjct: 74  NPNYRLFACTTKTTGHHTDAKYQQGDVLLFGPETRGLPAEVIESLPMEQRIRIPMMPDAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  Y     F 
Sbjct: 134 SLNLSNAVAIIAYEAWRQFG 153


>gi|256070798|ref|XP_002571729.1| rna methyltransferase-related [Schistosoma mansoni]
 gi|238656876|emb|CAZ27959.1| rna methyltransferase-related [Schistosoma mansoni]
          Length = 407

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 67/151 (44%), Gaps = 5/151 (3%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + L G   +S AL   ++      ++++ L ++   +N+ +   +  V  Q + +I   +
Sbjct: 103 IILEGSKLISDALATGAKATSLFFSSQDVLQKVGDLSNVLN---IYYVKHQVMGRISSLQ 159

Query: 109 AVHQGLALETAPLLS--PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +    +AL   P        +A     + ++LD +NDP N+G+++RS  +   + I+ TK
Sbjct: 160 SPPGVIALFELPQQDCFKRKNAKFCLPVTLILDRINDPGNMGSLIRSGASLGLNSILVTK 219

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTD 197
                 +  + ++       IP  +  + TD
Sbjct: 220 GSVNIWNEKVIRAGMSGHFRIPVYQGLSWTD 250



 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 12/71 (16%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH--------LHMPGIIKALNVSNAA 269
                E  N ++A+++G+E  G+ P+    A  + H        +     I +LNV +AA
Sbjct: 338 SDYNSEEHNCRLAVVIGSEAHGVSPE----AFHLVHLTGGSRLVIPSADRISSLNVLSAA 393

Query: 270 AVALYITQNHF 280
           +V L   Q  F
Sbjct: 394 SVLLGEIQRQF 404


>gi|255767208|ref|NP_388774.2| rRNA methylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|269969434|sp|O31590|TRML_BACSU RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase CspR
 gi|225184835|emb|CAB12721.2| putative rRNA methylase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 160

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++  +L ++     E +  +   +L
Sbjct: 8   VVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSL 67

Query: 196 TDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAH 253
            +  +      F  I           +    ++    + G E  GL     Q        
Sbjct: 68  EELFEAYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDRCLR 127

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M   +++LN+SN AA+ +Y     
Sbjct: 128 LPMTEHVRSLNLSNTAAILVYEALRQ 153


>gi|221308732|ref|ZP_03590579.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313055|ref|ZP_03594860.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221317980|ref|ZP_03599274.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221322254|ref|ZP_03603548.1| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|1381681|gb|AAB02738.1| CspR [Bacillus subtilis subsp. subtilis str. JH642]
          Length = 157

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++  +L ++     E +  +   +L
Sbjct: 5   VVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSL 64

Query: 196 TDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAH 253
            +  +      F  I           +    ++    + G E  GL     Q        
Sbjct: 65  EELFEAYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDRCLR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M   +++LN+SN AA+ +Y     
Sbjct: 125 LPMTEHVRSLNLSNTAAILVYEALRQ 150


>gi|297522032|ref|ZP_06940418.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           OP50]
          Length = 66

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 32/61 (52%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P L A  +   L++LD V DPHN+GA LRSA A     +I  K  S   +A   K A GA
Sbjct: 6   PDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGA 65

Query: 184 L 184
            
Sbjct: 66  A 66


>gi|296332315|ref|ZP_06874776.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305673592|ref|YP_003865264.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296150233|gb|EFG91121.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411836|gb|ADM36955.1| putative rRNA methylase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 157

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++  +L ++     E +  +   +L
Sbjct: 5   VVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSL 64

Query: 196 TDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAH 253
            +  ++      F             +    ++    + G E  GL     Q        
Sbjct: 65  EELFEEYQKGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDRCLR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M   +++LN+SN AA+ +Y     
Sbjct: 125 LPMTEHVRSLNLSNTAAILVYEALRQ 150


>gi|116748593|ref|YP_845280.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB]
 gi|193806435|sp|A0LHE3|RSMG2_SYNFM RecName: Full=Ribosomal RNA small subunit methyltransferase G 2;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase 2; Short=16S rRNA m7G
           methyltransferase 2
 gi|116697657|gb|ABK16845.1| methyltransferase GidB [Syntrophobacter fumaroxidans MPOB]
          Length = 498

 Score = 79.7 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 9/128 (7%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           VL    DP N+GA++RSA AF    +I  +  +        +++ GA+  +       L 
Sbjct: 354 VLVPFQDPENVGAVIRSAAAFGAVQVILLRESAHPFHPKALRASGGAVLRMKLRNGPPLE 413

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           +  + +       + LS++ +  + + +      L+ G EG GL    +  +     + +
Sbjct: 414 NLPENL-----PILPLSAEGR-DITRHVFPAAFGLLPGLEGPGLPDNWRRKS---FAIPI 464

Query: 257 PGIIKALN 264
              +++LN
Sbjct: 465 CKDVESLN 472


>gi|319408914|emb|CBI82571.1| RNA methyltransferase [Bartonella schoenbuchensis R1]
          Length = 162

 Score = 79.7 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR +        I            L ++    LEH    R  +    ++ M  
Sbjct: 18  GNTGTILRLSACLGVHVHIIEPAGFNLSDRNLKRAGMDYLEHALLERHIDWQHFIETMRH 77

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  + + LS+ +K             L+ G E  G+     E       + M    ++LN
Sbjct: 78  FNRRLLLLSTKAKTCYTDIRYQKNDVLLFGRESAGVPNYVYEAVDHTLTIPMQPHARSLN 137

Query: 265 VSNAAAV 271
           ++ + A+
Sbjct: 138 LAMSVAI 144


>gi|295107992|emb|CBL21945.1| Predicted rRNA methylase (SpoU class) [Ruminococcus obeum A2-162]
          Length = 166

 Score = 79.7 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 5/152 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L +VL     P N G I R+ VA      +            L ++     + +    
Sbjct: 2   AKLNIVLLEPEIPANTGNIGRTCVATGTKLHLIEPLGFSLSEKALKRAGMDYWKDLDVST 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             +  D ++   +   +    ++ + K        D   ++ G E  G+  +   E   +
Sbjct: 62  YLDYEDFVE--KNPNAKIYYATTKALKTYTDVQYEDDCYIMFGKESAGIPEEILMEHKEN 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
              + M   I++LN+SN+ A+ LY    QN F
Sbjct: 120 CVRIPMINDIRSLNLSNSVAIVLYEALRQNQF 151


>gi|225077352|ref|ZP_03720551.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
           NRL30031/H210]
 gi|224951344|gb|EEG32553.1| hypothetical protein NEIFLAOT_02412 [Neisseria flavescens
           NRL30031/H210]
          Length = 154

 Score = 79.7 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +S+ + ++     E        
Sbjct: 2   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++    +   L+ G E +GL  +  +   A   
Sbjct: 62  NFDDCLKAL--EGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEVLDNLPAGQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             L M    +++N+SN  AV L+    QN FA
Sbjct: 120 IRLPMMPDSRSMNLSNTVAVILFEAWRQNGFA 151


>gi|144899702|emb|CAM76566.1| rRNA methylase (SpoU class) [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 156

 Score = 79.7 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA+LR +        I        +   + ++    ++H    R ++     QK  
Sbjct: 14  PQNAGALLRLSACLGIPLEIIEPCGFLWDEKRMRRAGMDYVDHARVTRHASWNAFRQK-- 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + + L++     L+         +++G E  G+ P+    A     + M   +++L
Sbjct: 72  -PGGRLVLLTTAGGTRLDGFSFRPGDVIMMGRESAGVPPEVAAEADVTVRIPMAPGLRSL 130

Query: 264 NVSNAAAVA 272
           NV+ AA +A
Sbjct: 131 NVALAATLA 139


>gi|323453231|gb|EGB09103.1| hypothetical protein AURANDRAFT_25148 [Aureococcus anophagefferens]
          Length = 155

 Score = 79.7 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L++    V+   N+  + R+A  F+C+ ++         +      A  A   I    ++
Sbjct: 1   LVVCASLVDKAPNLAGLCRTAEVFACEKLVLPDDRCA-RTKEFKAIAVTAERWIATEAVA 59

Query: 194 --NLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
             +L   L  + + G+  + L  +++S              L+LG E +G+     +   
Sbjct: 60  PRDLRPWLLGLKARGYAVVALEQATNSTSLAGDAELPSPAVLLLGREKEGVPGDLMDLCD 119

Query: 250 SMAHLHMPGIIKALNVSNAAAV 271
               +   G++++LNV  + A+
Sbjct: 120 VCVEIPQLGVVRSLNVHVSGAL 141


>gi|328541799|ref|YP_004301908.1| TRNA/rRNA methyltransferase (SpoU) [polymorphum gilvum SL003B-26A1]
 gi|326411551|gb|ADZ68614.1| TRNA/rRNA methyltransferase (SpoU) [Polymorphum gilvum SL003B-26A1]
          Length = 181

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 8/145 (5%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + ++   N+G ++RSA AF      T    + S         S + EH+P     +  + 
Sbjct: 10  EGLSKRMNLGNLMRSAHAFGASFFFTVDA-AQSLRKAPPSDTSKSPEHLPLFSWDS-VET 67

Query: 199 LQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           +   H  G Q +G+   +    L   +   + A +LG E   L P        +  +   
Sbjct: 68  MDLPH--GCQLVGVELTEDAVDLPSFMHPLRAAYVLGPERGSLSPAMLARCDHVVKIPTR 125

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
             I   NV+ A A+ LY       +
Sbjct: 126 FCI---NVATAGAIVLYDRHRALGR 147


>gi|86605765|ref|YP_474528.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86554307|gb|ABC99265.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp.
           JA-3-3Ab]
          Length = 151

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R+  A      +            L ++     EH+   R 
Sbjct: 2   PFHVVLVAPEIPANTGNIARTCAATRTPLHLVDPLGFRLSDRYLRRAGLDYWEHVQLHRY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            + +  +Q      F     S   K    +        L+ G+E +GL P   ET     
Sbjct: 62  PSWSALVQAHPEARFWCF--SVRGKALYTEVAYQPGDWLVFGSESRGLDPMFLET-YPSV 118

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + + G +++LN+SNA A+AL+     
Sbjct: 119 RIPLSGPVRSLNLSNAVAIALFEALRQ 145


>gi|292670912|ref|ZP_06604338.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
 gi|292647533|gb|EFF65505.1| TrmH family RNA methyltransferase [Selenomonas noxia ATCC 43541]
          Length = 209

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 14/173 (8%)

Query: 112 QGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
            G+AL          ++  +S++ +VL     P N G I R       D  +       +
Sbjct: 31  NGVALFLE-------ESGGSSRMHIVLVEPEIPGNTGNIARLCAGTGMDLHLVRPLGFST 83

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           +   L ++       +      + +D  ++     F     ++ +       +       
Sbjct: 84  DDKYLKRAGLDYWHLVKVHYHDSFSDVRKQYKGHPF--YFCTTKAAHIYSDIVYTSDAFF 141

Query: 232 ILGAEGKGLRPKTQETAT---SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + G E +GL     E          + M    ++LN+SNA AV  Y      A
Sbjct: 142 VFGKETEGLPESLLE--DNEEHTVRIPMQAGARSLNLSNAVAVVAYEALRQNA 192


>gi|311897345|dbj|BAJ29753.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 219

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++     NIG+++R+A AF   G+    R          + A     + 
Sbjct: 67  DTRRHGFHVAVENWQHDFNIGSVVRTANAFLAGGVHIVGRR-----RWNRRGAMVTDRYQ 121

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++          G   IG+       PLE     ++  L+ G EG GL  +   
Sbjct: 122 HVRHHDSVASLAAYAAGLGMPVIGIDNLPGAVPLETFRLPERCVLLFGQEGPGLTEEAWR 181

Query: 247 TATSMAHLHMPGIIKALN 264
            AT++  +   G  +++N
Sbjct: 182 HATAVCSIAQFGSTRSIN 199


>gi|213861079|ref|ZP_03385783.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 225

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++RS  
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCA 219

Query: 156 AFSCDG 161
            F   G
Sbjct: 220 HFGVKG 225


>gi|23502412|ref|NP_698539.1| RNA methyltransferase [Brucella suis 1330]
 gi|62290431|ref|YP_222224.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700354|ref|YP_414928.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|148559238|ref|YP_001259422.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|161619491|ref|YP_001593378.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163843802|ref|YP_001628206.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|189024660|ref|YP_001935428.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225853026|ref|YP_002733259.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|254689732|ref|ZP_05152986.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 6 str. 870]
 gi|254694221|ref|ZP_05156049.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697876|ref|ZP_05159704.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254704799|ref|ZP_05166627.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 3 str. 686]
 gi|254708213|ref|ZP_05170041.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis
           M163/99/10]
 gi|254710583|ref|ZP_05172394.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis B2/94]
 gi|254730767|ref|ZP_05189345.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 4 str. 292]
 gi|256032077|ref|ZP_05445691.1| tRNA/rRNA methyltransferase SpoU [Brucella pinnipedialis M292/94/1]
 gi|256045169|ref|ZP_05448068.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114120|ref|ZP_05454874.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160273|ref|ZP_05457967.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti M490/95/1]
 gi|256255478|ref|ZP_05461014.1| tRNA/rRNA methyltransferase SpoU [Brucella ceti B1/94]
 gi|256257985|ref|ZP_05463521.1| tRNA/rRNA methyltransferase SpoU [Brucella abortus bv. 9 str. C68]
 gi|256369962|ref|YP_003107473.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260169212|ref|ZP_05756023.1| RNA methyltransferase, TrmH family protein [Brucella sp. F5/99]
 gi|260546966|ref|ZP_05822705.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260565232|ref|ZP_05835716.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260565958|ref|ZP_05836428.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260755264|ref|ZP_05867612.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758485|ref|ZP_05870833.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260762310|ref|ZP_05874653.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|261214528|ref|ZP_05928809.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|294852864|ref|ZP_06793537.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|297248817|ref|ZP_06932535.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str.
           B3196]
 gi|23348399|gb|AAN30454.1| RNA methyltransferase, TrmH family [Brucella suis 1330]
 gi|62196563|gb|AAX74863.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
           9-941]
 gi|82616455|emb|CAJ11518.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis biovar
           Abortus 2308]
 gi|148370495|gb|ABQ60474.1| RNA methyltransferase, TrmH family [Brucella ovis ATCC 25840]
 gi|161336302|gb|ABX62607.1| tRNA/rRNA methyltransferase (SpoU) [Brucella canis ATCC 23365]
 gi|163674525|gb|ABY38636.1| tRNA/rRNA methyltransferase (SpoU) [Brucella suis ATCC 23445]
 gi|189020232|gb|ACD72954.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225641391|gb|ACO01305.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis ATCC 23457]
 gi|256000125|gb|ACU48524.1| RNA methyltransferase, TrmH family [Brucella microti CCM 4915]
 gi|260096016|gb|EEW79893.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260151300|gb|EEW86394.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155476|gb|EEW90556.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|260668803|gb|EEX55743.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672742|gb|EEX59563.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675372|gb|EEX62193.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260916135|gb|EEX82996.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|294821453|gb|EFG38452.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|297175986|gb|EFH35333.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus bv. 5 str.
           B3196]
 gi|326409566|gb|ADZ66631.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28]
 gi|326539270|gb|ADZ87485.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis M5-90]
          Length = 159

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 2   ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 62  PDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 121

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 122 LIPMVRSARSLNLAVSVA 139


>gi|327405077|ref|YP_004345915.1| tRNA/rRNA methyltransferase SpoU [Fluviicola taffensis DSM 16823]
 gi|327320585|gb|AEA45077.1| tRNA/rRNA methyltransferase (SpoU) [Fluviicola taffensis DSM 16823]
          Length = 158

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 13/136 (9%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
           HNIG + RSA       I T  +    +++ + ++ +     IPY     L D    +  
Sbjct: 21  HNIGTLWRSAYILGAAYIFTVGKRYKKQTSDVTRTWA----RIPYFHYDTLEDLCNNI-- 74

Query: 205 WGFQTIGLS---SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +     +   ++  + L       +   +LG+E +GL     E    +  L       
Sbjct: 75  -PYDCCLTAIELTEGAEFLHDFEHPKRAIYLLGSEDQGLPDSVLEKCRKVIKLP---GNS 130

Query: 262 ALNVSNAAAVALYITQ 277
           +LNV+   ++ L+   
Sbjct: 131 SLNVAVTGSIVLHDRA 146


>gi|312067485|ref|XP_003136765.1| hypothetical protein LOAG_01177 [Loa loa]
 gi|307768079|gb|EFO27313.1| hypothetical protein LOAG_01177 [Loa loa]
          Length = 612

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 4/149 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + +  L++V   ++   N+G I R+      + +I     S  +       +  +   + 
Sbjct: 454 LESVSLIVVASLLDKAANLGGICRTCEVLGVEKLIVADL-SKIKDRNFMALSMSSENWMN 512

Query: 189 YI--RISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
               R   L++ L      G+  IG   + +  PL +     K+ L+LG E  G+     
Sbjct: 513 LEQSRPEELSNLLLSFRDSGYVIIGAEQTTNSTPLHKIRLPSKMVLLLGNEKGGIPMDLL 572

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALY 274
                   +   G  ++LNV    A+ +Y
Sbjct: 573 GYLDKTVEVVQIGHTRSLNVHVTGALFIY 601


>gi|260434472|ref|ZP_05788442.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH
           8109]
 gi|260412346|gb|EEX05642.1| RNA methyltransferase, TrmH family, group 2 [Synechococcus sp. WH
           8109]
          Length = 163

 Score = 79.3 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 11/154 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L + L     P N G I R++ AF     +        +   + ++      H+    
Sbjct: 5   APLRIALFEPQIPPNTGNIARTSAAFRVPLTLIEPLGFKVDDRSVRRAGLDYWPHVQLSI 64

Query: 192 ISNLTDALQKMH-SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            SN  +   ++      + IG S      L          L+ G E  GL    +E   S
Sbjct: 65  TSNFAEFQAELRPEQ--RLIGCSRRGGSSLSSFTFQRGDVLLFGREDTGLPEPVREACDS 122

Query: 251 MAHLHMPGIIK--------ALNVSNAAAVALYIT 276
           +  + MPG           +LN+S A A+  Y+ 
Sbjct: 123 ILTIPMPGAADDAGQGGVRSLNLSVACALVTYVA 156


>gi|296167821|ref|ZP_06850006.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897019|gb|EFG76640.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 218

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG+++R+A AF+   +    R          + A     +   
Sbjct: 65  RRHPLHVAIENFGHDANIGSVVRAANAFAVHTVHIVGRR-----RWNRRGAMVTDRYQRL 119

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
               +    L      G   + +        LE+     +  L+ G EG G+    +  A
Sbjct: 120 RHHDSTAALLAFAAGAGLTVVAVDNVPGAARLEETALPRECLLVFGQEGPGITDDVRSGA 179

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 180 AVTVSIAQFGSTRSINAGVAAGIAMHAWIRQH 211


>gi|121602085|ref|YP_989283.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120614262|gb|ABM44863.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
          Length = 155

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 39/127 (30%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR          I            L ++    LE     R  +    L  M  
Sbjct: 14  GNTGTILRLGACLGVHVHIIEPAGFDLSDRNLKRAGMDYLERASLERHIDWQHFLDAMQK 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  +   LS+ +              L+ G E  G+     +       + M    ++LN
Sbjct: 74  FNRRLFLLSTKATTCYTNIRYQKNDVLLFGRESAGVPDYVHQAVDCTLKIPMQQQARSLN 133

Query: 265 VSNAAAV 271
           ++ + A+
Sbjct: 134 LAMSVAI 140


>gi|254702266|ref|ZP_05164094.1| tRNA/rRNA methyltransferase SpoU [Brucella suis bv. 5 str. 513]
          Length = 159

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 2   ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 62  PDWNRFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 121

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 122 LIPMVRSARSLNRAVSVA 139


>gi|241760704|ref|ZP_04758796.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
           SK114]
 gi|241318885|gb|EER55411.1| RNA methyltransferase, TrmH family, group 2 [Neisseria flavescens
           SK114]
          Length = 154

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +S+ + ++     E        
Sbjct: 2   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++        L+ G E +GL  +  ++  A   
Sbjct: 62  NFEDCLKAL--EGRRIFALTTKGSTRPDEVSFRKGDVLLFGPETRGLPAEVLDSLPAGQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             L M    +++N+SN  AV L+    QN FA
Sbjct: 120 IRLPMMPDSRSMNLSNTVAVILFEAWRQNGFA 151


>gi|317121641|ref|YP_004101644.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
 gi|315591621|gb|ADU50917.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
           12885]
          Length = 153

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 3/135 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G + R+         +           +L ++      H+ +       + L  +   
Sbjct: 14  NTGNVARTCAVTGARLHLVRPLGFRLSDRLLKRAGMDYWNHVEWHVHDTWDELLAALPEA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALN 264
            F    L  D  +           AL+ G+E +GL P+  ++       + M   +++LN
Sbjct: 74  RF--CYLEPDGSQRYTDVTFRPGDALVFGSESRGLPPEFLRQRPGPTLRVPMRPGLRSLN 131

Query: 265 VSNAAAVALYITQNH 279
           +++  A+ LY     
Sbjct: 132 LASTVALVLYEAYRQ 146


>gi|332519777|ref|ZP_08396241.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332044336|gb|EGI80530.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 152

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 140 HVND---PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            + +   P N+G + R+A       I T         A  A     A++ +PY       
Sbjct: 13  GIQNGKTPENLGVLWRTAQNLGASYIFTIGNR----YAKQACDTHNAVKSMPYFHYKTFE 68

Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           D  + +   G + +G+  D S   LE      +   +LGAE  GL  +  E +  +    
Sbjct: 69  DFYKNIPK-GARLVGVELDDSAVALETFHHPRRCVYLLGAEDHGLSKQAIEKSHFLVK-- 125

Query: 256 MPGIIKALNVSNAAAVALYIT 276
               + +LNV+ A ++ +Y  
Sbjct: 126 FKSQL-SLNVAVAGSIVMYDR 145


>gi|312882793|ref|ZP_07742527.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369577|gb|EFP97095.1| RNA methyltransferase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 158

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS- 204
           N G I+R       +  +        E   + ++     +     R  +    LQ ++  
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYPAFLQYLNEN 73

Query: 205 -WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
             GF+    ++ +              L+ G E +GL     ++  A     + M    +
Sbjct: 74  RQGFRLFACTTKASGHHVDAQFQQGDVLLFGPETRGLPEDIIDSLPAEQRLRIPMMPDAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|254470047|ref|ZP_05083451.1| rRNA Methylase [Pseudovibrio sp. JE062]
 gi|211960358|gb|EEA95554.1| rRNA Methylase [Pseudovibrio sp. JE062]
          Length = 151

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A        +      P     L ++    +E     R  +     +   
Sbjct: 12  PQNTGTLLRLAACMDVTVHLIEPAGFPLSDHALKRAGMDYIERAKLQRHMDWESFREWQL 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +   + I +++   +P  Q        +++G E  G+  +  + A S   + M   +++L
Sbjct: 72  AEKRRLILMTTKGTRPYTQFAFKKDDLILMGRESSGVPEEIHQLADSRLLIPMKNGMRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N++ +  + L      
Sbjct: 132 NMAVSTGMVLGEALRQ 147


>gi|113954223|ref|YP_730533.1| rRNA methylase [Synechococcus sp. CC9311]
 gi|113881574|gb|ABI46532.1| Predicted rRNA methylase [Synechococcus sp. CC9311]
          Length = 176

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 9/172 (5%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           + +   S    ++    L + L     P N G I R+  AF     +        E   L
Sbjct: 3   KVSNNQSSEEQSLIQKPLRVALFEPRIPPNTGNIARTCAAFGLPLDLIEPLGFSLEDRYL 62

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            ++      H+      ++    + +     + IG S      L          L+ G E
Sbjct: 63  KRAGLDYWPHVDLTIHKDVDAFFESLAQPS-RVIGCSRRGGILLRNMEFQKGDVLLFGRE 121

Query: 237 GKGLRPKTQETATSMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280
             GL    +     +  + MP        G +++LN+S A A+  +   +  
Sbjct: 122 DTGLPETIRSRCHQITTISMPCSAGEDGQGGVRSLNLSVACAIVSHQAGSQL 173


>gi|302832103|ref|XP_002947616.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f.
           nagariensis]
 gi|300266964|gb|EFJ51149.1| hypothetical protein VOLCADRAFT_116506 [Volvox carteri f.
           nagariensis]
          Length = 279

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 37/163 (22%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------------TKRYSPS 171
           R  ++L+VL+   D  N  A LR+A       +                    T  + P 
Sbjct: 36  RTDRILLVLERCTDNQNYLACLRTAEILGVQNVWIVLSPRGMKNEALIAADGWTSGHLPP 95

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
             +   +    A +  P        DA+  +H       G +              ++A+
Sbjct: 96  PPSACRRCWRMAGKSGPRTWRRR--DAI-LLH-------GTALS---------LPARLAV 136

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           ++G E  G+  +    A     L M G   + N+S A ++ L+
Sbjct: 137 VMGREADGVSREMLAAAHRRVCLPMYGFNDSFNLSVATSMVLH 179


>gi|291558267|emb|CBL35384.1| Predicted rRNA methylase (SpoU class) [Eubacterium siraeum V10Sc8a]
          Length = 168

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         I        +   L  +      ++       L
Sbjct: 5   IVLVEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITYYDGL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D  ++     F         +         DK  ++ G E KGL  +      +     
Sbjct: 65  DDFFERNKDGEFFYFTT--KGRNTYCDAEYKDKTYIVFGREDKGLPEELLFHNKQHC--- 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M   +++LN+SN+ A+  Y     + 
Sbjct: 120 VRIPMGSNMRSLNLSNSVAIGAYEVLRQWG 149


>gi|311067376|ref|YP_003972299.1| putative rRNA methylase [Bacillus atrophaeus 1942]
 gi|310867893|gb|ADP31368.1| putative rRNA methylase [Bacillus atrophaeus 1942]
          Length = 157

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++  +L ++     E +  +   +L
Sbjct: 5   VVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSL 64

Query: 196 TDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAH 253
            +  +      F  I           +    ++    + G E  GL     E        
Sbjct: 65  EELFEAYQKGQFFLITKFGQKPHTSFDYTDIDEDYFFVFGRETSGLPKDLIEKNMDRCLR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M   +++LN+SN AA+ +Y     
Sbjct: 125 LPMTEHVRSLNLSNTAAILVYEALRQ 150


>gi|325120191|emb|CBZ55745.1| putative RNA methyltransferase, TrmH family domain-containing protein
            [Neospora caninum Liverpool]
          Length = 2918

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 2/114 (1%)

Query: 169  SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKND 227
            +   +   A + S  L         N+   L  + S G+  +G+  + S + LE      
Sbjct: 2803 TAEPTVTAALATSLVLFRFQVA-ADNVGTYLLDLKSKGYTVVGVEQTGSSEMLENATFER 2861

Query: 228  KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            K AL+LGAE +GL         +   +   G+I++LNV   AA+ ++      A
Sbjct: 2862 KTALVLGAEKEGLPAALLALMDACIEIPQLGLIRSLNVHVTAAMVVWEYTKQHA 2915


>gi|325264611|ref|ZP_08131341.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
 gi|324030273|gb|EGB91558.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. D5]
          Length = 165

 Score = 79.3 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 5/150 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            L ++       +      + 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVASNTRLHLIGPLGFKLNEKALKRAGMDYWSDLDVTTYIDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D ++   + G +    ++ + K   +        ++ G E  G+  +   E   +   +
Sbjct: 64  NDFME--KNPGAKIYMATTKAPKVYTEVHYEPDCFIMFGKESAGIPEEILVEHKENCVRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFAK 282
            M G I++LN+ N+ A+ LY    QN F++
Sbjct: 122 PMVGDIRSLNLGNSVAIVLYEALRQNGFSE 151


>gi|311032447|ref|ZP_07710537.1| putative rRNA methylase [Bacillus sp. m3-13]
          Length = 163

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++  +L ++     E +  +   +L
Sbjct: 5   VVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYYDSL 64

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSM 251
            +  +K     F      G+   +     +  K+     + G E  GL     Q      
Sbjct: 65  DELFEKNKEAEFFYITKFGMKPHTSFDYSKLDKD--YFFVFGRETTGLPKDLIQSNLDQC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M   +++LN+SN AA+ +Y     
Sbjct: 123 LRLPMTKNVRSLNLSNTAAILIYEALRQ 150


>gi|262369376|ref|ZP_06062704.1| rRNA methylase [Acinetobacter johnsonii SH046]
 gi|262315444|gb|EEY96483.1| rRNA methylase [Acinetobacter johnsonii SH046]
          Length = 159

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E          
Sbjct: 4   VVLYEPEIPANTGNIIRLCANTGAQLHLVKPLGFELDDKKLKRAGLDYHEWARMQIWETF 63

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            + L  +   G        L++   +       N  +AL++G E +GL  + +       
Sbjct: 64  DECLANLALKGVDINAIYPLTTKGTETPHTSDLNRPVALLMGPETRGLPEQVRMLFPKEH 123

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV +Y     
Sbjct: 124 WIRLPMAENSRSLNLSNATAVIVYEAWRQ 152


>gi|240850138|ref|YP_002971531.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267261|gb|ACS50849.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
          Length = 158

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 45/127 (35%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR +  F     I            L ++    LE+    R  +    +  M  
Sbjct: 14  GNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGLDYLEYASLERHIDWQHFISSMKH 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  + + LS+ +K    Q        L+ G E  G+     E A     + M    ++LN
Sbjct: 74  FNRRLLLLSTKAKTCYTQICYQKNDVLLFGRETAGVPDYVHEAADYTLKIPMQPQARSLN 133

Query: 265 VSNAAAV 271
           ++   A+
Sbjct: 134 LAMCVAI 140


>gi|163787679|ref|ZP_02182126.1| hypothetical protein FBALC1_04032 [Flavobacteriales bacterium
           ALC-1]
 gi|159877567|gb|EDP71624.1| hypothetical protein FBALC1_04032 [Flavobacteriales bacterium
           ALC-1]
          Length = 152

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 12/141 (8%)

Query: 140 HVND---PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            + +   P N+G + RSA       I T         A  A     A++ +PY       
Sbjct: 13  GIQNGKTPENLGVLWRSAQNLGASFIFTIGNR----YAKQACDTHNAVKSMPYFHYETFE 68

Query: 197 DALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           D    +   G + +G+  +   + LE      +   +LGAE  GL     + +  +    
Sbjct: 69  DFFNNLPK-GARLVGVELNKDAEDLETFHHPRRCVYLLGAEDHGLSKIAIDKSHFLVK-- 125

Query: 256 MPGIIKALNVSNAAAVALYIT 276
               + +LNVS A ++ +Y  
Sbjct: 126 FKSQL-SLNVSVAGSIVMYDR 145


>gi|321314617|ref|YP_004206904.1| putative rRNA methylase [Bacillus subtilis BSn5]
 gi|291483342|dbj|BAI84417.1| rRNA methylase-like protein [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020891|gb|ADV95877.1| putative rRNA methylase [Bacillus subtilis BSn5]
          Length = 157

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++  +L ++     E +  +   +L
Sbjct: 5   VVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSL 64

Query: 196 TDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAH 253
            +  +       F             +    ++    + G E  GL     Q        
Sbjct: 65  EELFEAYEKGQFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDRCLR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M   +++LN+SN AA+ +Y     
Sbjct: 125 LPMTEHVRSLNLSNTAAILVYEALRQ 150


>gi|289449578|ref|YP_003475415.1| TrmH family RNA methyltransferase [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184125|gb|ADC90550.1| RNA methyltransferase, TrmH family, group 2 [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 163

 Score = 78.9 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N GAI R+ VA      +        +   + ++     +H+ Y    N+
Sbjct: 4   IVLVEPEIPYNTGAIGRTCVALGAALHLVGPMGFSIDEKQVRRAGLDYWQHLNYTFYENI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D          +    ++ +     +     +  +  G E  GL  +      E     
Sbjct: 64  VDF--TAKHPDIKPFYATTKALNTYAEVSYPSETWIFFGKESAGLPEEMLLPFPERC--- 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN+ A+  Y     
Sbjct: 119 IRIPMYPQIRSLNLSNSVAIIAYEVARQ 146


>gi|49474493|ref|YP_032535.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239997|emb|CAF26411.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 157

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR +  F     I            L ++    LE+    R  +    +  M  
Sbjct: 14  GNTGTILRLSACFGLHVHIIEPAGFSLSDRNLKRAGMDYLEYASLNRHIDWQSFMSTMKH 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  + + LS+ ++    Q    +   L+ G E  G+     E       + M    ++LN
Sbjct: 74  FNRRLLLLSTKAETCYTQIYYRENDVLLFGRESAGVPDYVHEAVDHSLKIPMQPHARSLN 133

Query: 265 VSNAAAV 271
           ++ + A+
Sbjct: 134 LAMSVAI 140


>gi|168022298|ref|XP_001763677.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685170|gb|EDQ71567.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 223

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 9/160 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   L +VL     P N G+I R+  A      +        E + L ++       +  
Sbjct: 38  QQRLLQVVLVSPQIPGNTGSIARTCAATCVGLHLVEPMGFKVEDSKLRRAGLDYWPFVVV 97

Query: 190 IRISNLTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
               +  D            + +  +   +             L+ G+E  GL     E 
Sbjct: 98  RVHKSWDDFFTYFQEQEGEKRLLAFTKKGRTIHTDVKYKAGDWLVFGSEVDGLPAAILEQ 157

Query: 248 ATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
             S           M    +++LN+S AA + +Y      
Sbjct: 158 CRSGEFAGGSVRFPMNDSYVRSLNLSVAAGIGVYEALRQL 197


>gi|116074887|ref|ZP_01472148.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. RS9916]
 gi|116068109|gb|EAU73862.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. RS9916]
          Length = 158

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +  S L + L     P N G I RS  AF     +        +   + ++      H+
Sbjct: 2   TLPESPLRIALFEPRIPPNTGNIARSCAAFQLPLSLIEPLGFSIDDRAVKRAGLDYWPHV 61

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +    L ++     + IG S    + L          L+ G E  GL    +E 
Sbjct: 62  DLATHPDFEHFLAELPVPH-RLIGCSRHQGQSLSTFQFQPGDVLLFGREDTGLPNPVRER 120

Query: 248 ATSMAHLHMPGI--IKALNVSNAAAVA 272
             ++  + M G   +++LN+S + A+ 
Sbjct: 121 CDAICTIPMRGHENVRSLNLSVSCALV 147


>gi|78486290|ref|YP_392215.1| tRNA/rRNA methyltransferase (SpoU) [Thiomicrospira crunogena XCL-2]
 gi|78364576|gb|ABB42541.1| rRNA methylase family protein [Thiomicrospira crunogena XCL-2]
          Length = 154

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N GA++R +        +            + ++     E       ++L
Sbjct: 4   IILYEPEIPQNTGALIRLSANMGAHLHLIQPYAFDLSEKKVRRAGLDYAELANLKEHASL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+ +     +   L++ +++   + +  +  A + G E +GL     E+        
Sbjct: 64  EACLETIKPN--RVFALTTKTERYYTEPVFENGDAFLFGPETRGLPKDVIESVPEDQRLT 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    ++LN++NA +V  Y       
Sbjct: 122 IPMIPGGRSLNLANAVSVMAYEAWRQLG 149


>gi|323485379|ref|ZP_08090727.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
           WAL-14163]
 gi|323694141|ref|ZP_08108320.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323401242|gb|EGA93592.1| hypothetical protein HMPREF9474_02478 [Clostridium symbiosum
           WAL-14163]
 gi|323501858|gb|EGB17741.1| TrmH family RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 163

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I RS VA      +            + ++      H+     S+ 
Sbjct: 3   IVLYEPEMPMNTGNIGRSCVATKTKLHLIEPLGFRLSDREIKRAGLDYWPHLDVTVYSDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L    + G +    ++ +              ++ G E +G+  +   E   +   +
Sbjct: 63  RDFLD--RNPGAKIYMATTKAPNVYSDVKYEPDCYIMFGPESRGIPEEILVENQETCVRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G  ++LN+SN+ AV LY     
Sbjct: 121 PMWGETRSLNLSNSVAVILYEALRQ 145


>gi|93005998|ref|YP_580435.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393676|gb|ABE74951.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 186

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 16/160 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E+       N 
Sbjct: 5   IVLVAPKMPSNTGNIIRLCANSGAQLHLVKPLGFELDDKKLRRAGLDYHEYAHLQVHDNW 64

Query: 196 TDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND-------------KIALILGAEGKGLR 241
           + A Q +      TI  L++   KP                      +A++ G+E  GL 
Sbjct: 65  SIAKQALQDADCHTITALTTKLSKPFYDYDFGGQETAESGSDFSGNNVAMVFGSETAGLA 124

Query: 242 PKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +E   A +   L M    ++LN+SN+ A+ LY     
Sbjct: 125 DDIREDIGADNWLRLPMLADSRSLNLSNSVAICLYEVWRQ 164


>gi|50308721|ref|XP_454364.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643499|emb|CAG99451.1| KLLA0E09197p [Kluyveromyces lactis]
          Length = 1397

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 5/156 (3%)

Query: 123  SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              ++++V  S+L++V   V+   N+G I R         +         +       A  
Sbjct: 1236 QKSIESVARSELIVVASLVDKAPNLGGICRLCDVLGVGTMTIHDIR-VKQHPQFKNVAVT 1294

Query: 183  ALEHIPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK-NDKIALILGAEGK 238
            A   +P   + +  +   +      G+  IGL  +DS   L  E K   K  ++LG E  
Sbjct: 1295 ADRWMPIEEVPVDGIISYMNAKKLEGYTLIGLEQTDSSIQLNSEFKFPSKSVILLGTEAH 1354

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
            G+     +       +   G+I+++N+  A AV ++
Sbjct: 1355 GIPGHLLKELDLCLEIKQSGVIRSMNIQTATAVIVH 1390


>gi|319638738|ref|ZP_07993497.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
 gi|317399979|gb|EFV80641.1| tRNA/rRNA methyltransferase [Neisseria mucosa C102]
          Length = 154

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +S+ + ++     E        
Sbjct: 2   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFAKLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++    +   L+ G E +GL  +  ++  A   
Sbjct: 62  NFEDCLKAL--EGRRIFALTTKGSTRPDEVSFREGDVLLFGPETRGLPAEILDSLPAGQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  AV L+     
Sbjct: 120 IRLPMMPGSRSMNLSNTVAVILFEAWRQ 147


>gi|145345886|ref|XP_001417430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577657|gb|ABO95723.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 233

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 28/157 (17%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMH 203
           N+GA+ R+  AF C            E      +A GA   +P      ++L DA   + 
Sbjct: 70  NVGAMARACAAFECCDFRVATPLCDVECRACVNAAKGAQWLVPRAADAHASLEDA---LR 126

Query: 204 SWGFQTIG--------LSSDSKKPLEQEIK------------NDKIALILGAEGKGLRPK 243
                 +G          +++ +    ++               K+AL+ G E  GL  +
Sbjct: 127 GTVGTVVGFHPWRLDDAEAEASRARFDDLAALTAAYPGGGEDGGKLALVFGNEADGLSER 186

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL---YITQ 277
                 ++  + M  +I++L+V++AA +AL   +  +
Sbjct: 187 ELALCDALCSIPMGRLIESLSVTHAAVIALSRFFEAR 223


>gi|325971621|ref|YP_004247812.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324026859|gb|ADY13618.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 166

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +            L ++       +     +N+
Sbjct: 5   IVLFEPEIPQNTGNIARTCAAVGATLHLVHPLGFSLSEKHLRRAGLDYWPLLTLCEYANV 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            +  Q     G      ++ +K    +    ++  L+ G E  G+      E   +   +
Sbjct: 65  DEFFQ--KKSGENLYFFTTKAKHSYTELTYPEETYLVFGKESAGIPESILVEHQKTCVRI 122

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M    ++LN+SN+ A+A Y    Q  F+
Sbjct: 123 PMRSQARSLNLSNSVAIATYEYLRQAQFS 151


>gi|27364652|ref|NP_760180.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6]
 gi|37681300|ref|NP_935909.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|320155047|ref|YP_004187426.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus
           MO6-24/O]
 gi|27360797|gb|AAO09707.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus CMCP6]
 gi|37200051|dbj|BAC95880.1| predicted rRNA methylase [Vibrio vulnificus YJ016]
 gi|319930359|gb|ADV85223.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio vulnificus
           MO6-24/O]
          Length = 157

 Score = 78.5 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 3/139 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       +  +        E   + ++     +     R  N    L  +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNYQAFLDYLEQR 73

Query: 206 G-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKA 262
           G ++    ++ +              L+ G E +GL  +  E+   +    + M    ++
Sbjct: 74  GEYRIFACTTKTTGHHVDAQYRQGDVLLFGPETRGLPMEVIESLPMSQRIRIPMMPDARS 133

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SNA A+  +       
Sbjct: 134 LNLSNAVAIIAFEAWRQLG 152


>gi|149197508|ref|ZP_01874559.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155]
 gi|149139526|gb|EDM27928.1| hypothetical protein LNTAR_00965 [Lentisphaera araneosa HTCC2155]
          Length = 162

 Score = 78.5 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG + RSA       I T  +    + + +  +     + IP     N  D        
Sbjct: 26  NIGTLWRSAYIMGASYIFTIDKKYKKQMSDVTHT----WKKIPLYHYKNFDDFYDN-QPT 80

Query: 206 GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             + I +   +    +      D+   +LG E  GL PK  +    +  L   G   +LN
Sbjct: 81  ATRIIAVELTEDAIDIADYEHPDQACYLLGNEQAGLAPKVLKRCHGIVKLP--GYF-SLN 137

Query: 265 VSNAAAVALYIT 276
           V+ A ++ +Y  
Sbjct: 138 VAVAGSILMYDR 149


>gi|227822223|ref|YP_002826194.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii
           NGR234]
 gi|227341223|gb|ACP25441.1| putative aminotransferase/methyltransferase [Sinorhizobium fredii
           NGR234]
          Length = 153

 Score = 78.5 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR A        I            L ++    +  +   R  N         
Sbjct: 14  PGNTGTILRLAACLGLAVDIIEPAGFDLSDRNLKRAGMDYIAAVTLTRHVNWERFETWRA 73

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + +  S+ + +P  +        L+ G E  G+     + A +   + M    ++L
Sbjct: 74  ESGRRLVLASTKAAEPYTRFEFRADDILLFGRESAGVPDHVHDRADARILIPMAPGQRSL 133

Query: 264 NVSNAAAVA 272
           N++ A+A+ 
Sbjct: 134 NIAMASAMI 142


>gi|222054953|ref|YP_002537315.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32]
 gi|221564242|gb|ACM20214.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. FRC-32]
          Length = 158

 Score = 78.5 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 5/153 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V+N    +VL     P N G I R   A      +  K    ++   L ++       + 
Sbjct: 2   VKNESFNIVLVEPEIPPNTGNIARLCGATGTILHLVGKLGFSTDDKTLKRAGLDYWSEVE 61

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247
                +L D L+  +  G         +K  +E E +     ++ G E KGL     E  
Sbjct: 62  IHYWPDL-DTLKAAYPNGRFIYTSKKVAKTYVELEFRCGDF-IVFGKETKGLPEDLIEAN 119

Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            ATS   + + G +++LN+S +A + LY     
Sbjct: 120 PATS-VRIPIFGKVRSLNLSTSAGIVLYEALRQ 151


>gi|119487746|ref|ZP_01621255.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
 gi|119455579|gb|EAW36716.1| RNA methyltransferase TrmH, group 2 [Lyngbya sp. PCC 8106]
          Length = 154

 Score = 78.5 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+  A   +  +            L ++      ++P    S++
Sbjct: 4   VVLIQPQIPPNTGNVARTCAATRTELHLVGPLGFEISDRDLRRAGLDYWPYVPLKIHSSI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                    WG + IG S   K+   Q        L+ G E  GL P+          + 
Sbjct: 64  EAFKHYHQYWGGRWIGFSKRGKQNYAQFQYQADDWLLFGPETTGLSPELLSACDVTTSIP 123

Query: 256 MP-GIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S + A+ L        
Sbjct: 124 MREPGVRSLNLSVSVAIGLLEAGRQLG 150


>gi|222151824|ref|YP_002560984.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
           JCSC5402]
 gi|222120953|dbj|BAH18288.1| SpoU rRNA methylase family protein [Macrococcus caseolyticus
           JCSC5402]
          Length = 157

 Score = 78.5 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I RS  A   D  +       ++  +L ++     + +      ++
Sbjct: 6   IVLYQPEIPANTGNIARSCAATDTDLHLIRPLGFSTDDKMLRRAGLDYWKFVNITYYDSI 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +  +K     +             +    ++K   I G E  GL    +E    +   +
Sbjct: 66  EEFFEKNKGHYYLLTKFGKKPHTTFDYSNTDEKHYFIFGKETTGLPDWVKEKYMDTALRI 125

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   +++LN+SN AA+ +Y     
Sbjct: 126 PMNDNVRSLNLSNTAAILIYEALRQ 150


>gi|306843106|ref|ZP_07475728.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2]
 gi|306286711|gb|EFM58264.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO2]
          Length = 171

 Score = 78.5 bits (193), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 14  ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 74  PDWHCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 133

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 134 LIPMVRSARSLNLAVSVA 151


>gi|307244027|ref|ZP_07526146.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492551|gb|EFM64585.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           stomatis DSM 17678]
          Length = 156

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     PHN G I+R+         +        +   L +      +        + 
Sbjct: 5   IVLVEPEIPHNTGNIIRTCANTGAILHLVRPLGFSLDDKHLKRCGLDYWDIADIQYYDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +   K     F     + + +K        D   L+ G E KGL     E    +   +
Sbjct: 65  EELEDKHKGAKF--FFSTINGQKNHTDVKYEDGCFLVFGKETKGLPKDLIEANMDTCIRI 122

Query: 255 HMPG--IIKALNVSNAAAVALYITQNHF 280
            M G    + LN+SNA A+ +Y      
Sbjct: 123 PMRGIEGARCLNLSNAVAIVVYEAMRQL 150


>gi|304406670|ref|ZP_07388325.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
           curdlanolyticus YK9]
 gi|304344203|gb|EFM10042.1| RNA methyltransferase, TrmH family, group 2 [Paenibacillus
           curdlanolyticus YK9]
          Length = 155

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++ A L ++       +      + 
Sbjct: 5   IVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFRTDDATLKRAGLDYWYAVNLTYYDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
           ++  ++     F     +  +K+  + E K+  +  + G E KGL  +  +     +  +
Sbjct: 65  SEVEERFKGHRFF-YASTRANKRYSDFEYKDGDL-FVFGKETKGLPQELLDANPNQLIRM 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   +++LN++N+AA+ +Y     
Sbjct: 123 PMTDKVRSLNLANSAAIVVYEALRQ 147


>gi|56419019|ref|YP_146337.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|261418815|ref|YP_003252497.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC61]
 gi|297531223|ref|YP_003672498.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           C56-T3]
 gi|319765631|ref|YP_004131132.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC52]
 gi|56378861|dbj|BAD74769.1| rRNA methylase [Geobacillus kaustophilus HTA426]
 gi|261375272|gb|ACX78015.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC61]
 gi|297254475|gb|ADI27921.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           C56-T3]
 gi|317110497|gb|ADU92989.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y412MC52]
          Length = 157

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +       ++  +L ++      ++     
Sbjct: 2   PLHVVLYQPEIPANTGNIARTCAATDTSLHLIRPLGFSTDDKMLKRAGLDYWPYVNISYY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQET-A 248
            +L +   +     F  I  +   ++  +    +D    I  + G E  GL  +  E   
Sbjct: 62  DSLDELFARFPEGEFYFI--TKFGRRYYDSFDFSDTEKHIFFVFGRETTGLPKELLEANM 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   +++LN+SN AA+ +Y     
Sbjct: 120 DRCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|313895570|ref|ZP_07829126.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320528960|ref|ZP_08030052.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis
           F0399]
 gi|312975696|gb|EFR41155.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|320138590|gb|EFW30480.1| RNA methyltransferase, TrmH family, group 2 [Selenomonas artemidis
           F0399]
          Length = 162

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R       +  +       +++  L ++       +        
Sbjct: 3   IVLVEPEIPGNTGNIARLCAGTGIELHLVRPLGFSTDNKYLKRAGLDYWHLVTVHYHDRF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
            + L+   +  F      + S+   +     D   L+ G E  GL              +
Sbjct: 63  DEVLEMYPNRTFYFCSTKA-SRTHCDVAYPPDAF-LVFGKESAGLPHDLLAAHRDRTIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M    ++LN+SNA AV  Y    QN+F+
Sbjct: 121 PMASGARSLNLSNAVAVVAYEALRQNNFS 149


>gi|224104027|ref|XP_002313287.1| predicted protein [Populus trichocarpa]
 gi|222849695|gb|EEE87242.1| predicted protein [Populus trichocarpa]
          Length = 264

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 20/170 (11%)

Query: 127 DAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           +  RN +LL +VL     P N G I R+  A S    +        + A L ++      
Sbjct: 74  EVSRNKKLLQVVLVSPQIPGNTGCIARTCAATSVGLHLVGPLGFQVDDAKLKRAGLDYWP 133

Query: 186 HIPYIRISNLTDALQKMHSW-------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
           ++      +  +                F   G ++ S+    +        L+ G+E  
Sbjct: 134 YVVVKVHDSWAEFQDYFRQQEGDKRLLAFTKRGTTTHSEFSYRKGDY-----LVFGSETS 188

Query: 239 GLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           GL P+      S      M  + M    ++ LN+S +  +ALY       
Sbjct: 189 GLPPEALLDCKSEMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLN 238


>gi|114327108|ref|YP_744265.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1]
 gi|114315282|gb|ABI61342.1| 23S rRNA methyltransferase [Granulibacter bethesdensis CGDNIH1]
          Length = 198

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE--HIPYIRISNLT 196
           + ++   N+GA+LR+A AF           +    A   +SA  A    H+P+ R  ++ 
Sbjct: 21  EGISKSANVGALLRTAHAFGAH---FCFSIAAGFDARAGRSADTADTPAHVPFYRFDSVE 77

Query: 197 DAL--QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
             +  +     G +     +D    L         A +LG E   L P   E  T +  +
Sbjct: 78  TVVLPKNCALVGVEI----TDDASLLPSFRHPANAAYVLGPERSSLSPALLERCTHVVRI 133

Query: 255 HMPGIIKALNVSNAAAVALYIT 276
                  +LN+S A A+ LY  
Sbjct: 134 PTRF---SLNLSVAGALVLYDR 152


>gi|50289637|ref|XP_447250.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526559|emb|CAG60183.1| unnamed protein product [Candida glabrata]
          Length = 1420

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 62/150 (41%), Gaps = 5/150 (3%)

Query: 129  VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            ++ S+L++V   V+ P N+G I R        G++T +             A  A + +P
Sbjct: 1265 IKRSELIVVSSLVDKPPNLGGICRLCDVLGV-GLLTVQDLRVKNHPQFKNVAVTADKWMP 1323

Query: 189  YIRI--SNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
               +    ++  +++    G+  IGL  +  S K         K  ++LG E  G+    
Sbjct: 1324 MEEVPIDEISKFMKEKKKEGYTLIGLEQTDKSIKLDNNFKFPSKSLILLGTEAHGIPGHL 1383

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALY 274
                     +   G+I+++N+  A AV ++
Sbjct: 1384 LNELDLCLEIKQHGVIRSMNIQTATAVIVH 1413


>gi|33240425|ref|NP_875367.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237952|gb|AAQ00020.1| Predicted rRNA methylase [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 166

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           ++L + L     P N G I R+ +AF  D  +         +  L ++     ++I    
Sbjct: 7   NKLSIALYEPRIPQNTGNIGRTCLAFDFDLHLILPLGFEINNKRLKRAGLDYWKYINLEL 66

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +     + ++    + IG S +   PL +       +L+ G E  GL    +     M
Sbjct: 67  HESFAHYSKFINPS--RIIGFSKEGGIPLSKIEFQSNDSLLFGREDLGLPSHVKNKCDFM 124

Query: 252 AHLHMPG--------IIKALNVSNAAAVALYITQNHFA 281
           A + MPG         +++LN+S A  +A + + N   
Sbjct: 125 ATIPMPGKSNSKNDNGVRSLNLSVACGIASFCSFNCLN 162


>gi|50550413|ref|XP_502679.1| YALI0D10989p [Yarrowia lipolytica]
 gi|49648547|emb|CAG80867.1| YALI0D10989p [Yarrowia lipolytica]
          Length = 1383

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 5/151 (3%)

Query: 129  VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
            +   +L++V   V+ P N+G I R +       ++T    S ++       A  A + +P
Sbjct: 1227 INRGELILVASLVDKPPNLGGICRLSDVLGAQ-LLTLNDISVAKHPQFKNVAVTADQWMP 1285

Query: 189  Y--IRISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
               +++  + + ++     G+  IGL  +  SK+  +  +   K  ++LG E +G+    
Sbjct: 1286 MAEVKVDEIAEFMRAKKREGYTLIGLEQTDQSKQLNKDFVFPKKSLILLGMEREGIPGNL 1345

Query: 245  QETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                     +   G+I+++N+  AAAV ++ 
Sbjct: 1346 LAELDYAVEIKQIGMIRSMNIQTAAAVIVHA 1376


>gi|197106334|ref|YP_002131711.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1]
 gi|196479754|gb|ACG79282.1| rRNA methylase family protein [Phenylobacterium zucineum HLK1]
          Length = 154

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 3/136 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA +R A        +      P     +A++A         +R +   D      
Sbjct: 11  PQNLGAAVRLAACLGVPLDVIEPCGFPLSDRAVARAAMDYAARADVVRHAGWGDFRAASQ 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + +  ++ + +P +         L+ G E  G+  +    A +   + +    ++L
Sbjct: 71  G---RLVLFTTRAAQPFQDFDFRPGDVLLFGRESAGVPDEVHAAADARLFIPLVAGARSL 127

Query: 264 NVSNAAAVALYITQNH 279
           NV  AAA+AL      
Sbjct: 128 NVVTAAAMALSEALRQ 143


>gi|120437322|ref|YP_863008.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
 gi|117579472|emb|CAL67941.1| tRNA/rRNA methyltransferase [Gramella forsetii KT0803]
          Length = 154

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 140 HVND---PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            + +   P N+G + RSA       I T       ++    K    A+  +PY       
Sbjct: 14  GIQNGKTPENLGVLWRSAQNMGASFIYTIGNRYSKQACDTHK----AVGAMPYFHYETFE 69

Query: 197 DALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           D    +   G   +G+   +S + LE      +   +LGAE  GL  +  + A  +    
Sbjct: 70  DFYAHLPK-GAMLVGVELNESAEHLEDFKHPRRCVYLLGAEDHGLSNQAIDKAHYLVK-- 126

Query: 256 MPGIIKALNVSNAAAVALYIT 276
               + +LNVS A ++ +Y  
Sbjct: 127 FKSTL-SLNVSVAGSIVMYDR 146


>gi|224002194|ref|XP_002290769.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974191|gb|EED92521.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1947

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +  QL++    V+   N+  + R++  F+   ++        +       ++ A + I  
Sbjct: 1789 KKQQLVVCATLVDKVPNLAGLARTSEIFAAQTLVIPNLL-VKKQDDFKSISASANDWIDM 1847

Query: 190  IRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  +L   L K  + GF  +GL  + S K + +    +K  L+LG E +G+  +   
Sbjct: 1848 EECKEEDLLKWLYKKKAEGFTIVGLEQTSSSKCITKTKFPEKTVLLLGKEKEGIPVQYLS 1907

Query: 247  TATSMAHLHMPGIIKALNVSNAAAVALY 274
               +   +   GII++LNV    A+A++
Sbjct: 1908 AVDTCIEIPQLGIIRSLNVHVTGALAIW 1935


>gi|150396754|ref|YP_001327221.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
 gi|150028269|gb|ABR60386.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
          Length = 153

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 47/129 (36%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR A        I            L ++    +  +   R  N         
Sbjct: 14  PGNTGTILRLAACLGLAVDIIEPAGFDLSDRNLKRAGMDYIAAVTMTRHVNWERFETWRS 73

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           S G + +  S+ +  P  + +      L+LG E  G+  +  E A +   + M    ++L
Sbjct: 74  STGRRLVLASTKAAVPYTRFMFKPDDILLLGRESAGVPDQVHERADARILIPMAPGQRSL 133

Query: 264 NVSNAAAVA 272
           N++ A A+ 
Sbjct: 134 NIAMAGAMI 142


>gi|189199908|ref|XP_001936291.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187983390|gb|EDU48878.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 388

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 69/189 (36%), Gaps = 41/189 (21%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK---- 178
            P++   R + ++M+   +++P N+G + R + +F  + +        +      K    
Sbjct: 196 PPSMQNQRPASVMMIASLIDNPTNLGGLSRISESFGLEALYI-----DNLKKAAHKDFKA 250

Query: 179 SASGALEHIPYIRISNL--TDALQKMHSWGFQTIGLS--------SDSKKPLEQEIKND- 227
           ++  + +H+    +  +     L    S G++ +G+                ++EI    
Sbjct: 251 TSVRSEKHLAIRELKEVGVPAFLLDAKSKGYEVVGIEQTDRSGILGHEDSSDQKEILTGD 310

Query: 228 ---------------------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                                K  L+LG+E +G+  +          +   G+ ++LNV 
Sbjct: 311 KSAGGQSTHVIRSQDIGTLPKKCCLVLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQ 370

Query: 267 NAAAVALYI 275
            A  +ALY 
Sbjct: 371 TAGGIALYE 379


>gi|156845610|ref|XP_001645695.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156116362|gb|EDO17837.1| hypothetical protein Kpol_1043p27 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1430

 Score = 78.5 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 5/151 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +V  S L++V   V+ P N+G I R        G++T +             A  A   +
Sbjct: 1274 SVTRSDLIVVSSLVDKPPNLGGICRLCDVLGV-GLLTVQDIRVKNHPQFKNVAVTADRWM 1332

Query: 188  PYIRI--SNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            P   +    + + ++     G+  IGL  +  S +   +     K  ++LG E  G+   
Sbjct: 1333 PMEEVPIDGIIEFMRAKKKEGYTLIGLEQTDKSIQLNNKYTFPKKSLILLGTEAHGIPGH 1392

Query: 244  TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                      +   G+I+++N+  A AV +Y
Sbjct: 1393 LLSELDLCLEIEQHGVIRSMNIQTATAVIVY 1423


>gi|256383727|gb|ACU78297.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256384558|gb|ACU79127.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455265|gb|ADH21500.1| rRNA Methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 181

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+GAI+R+ VA +    I        +   L++ ++   +++  IR  + 
Sbjct: 8   IVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRPSANEYKYVDCIRYDDW 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLR-PKTQETATSM 251
            D +            LS   +KP+        ND + L+ G E  G+  P  +E   + 
Sbjct: 68  NDFIT--KHPNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKEHYNTT 125

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++N   +A Y     
Sbjct: 126 FRIPMISETRSLNIANTVGIASYEVLRQ 153


>gi|325678609|ref|ZP_08158219.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
 gi|324109659|gb|EGC03865.1| RNA methyltransferase, TrmH family, group 2 [Ruminococcus albus 8]
          Length = 190

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 5/164 (3%)

Query: 119 APLLSPTLDAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           +P   P  ++ + +  L +VL     P N G I R+         +        +   L 
Sbjct: 11  SPEHQPPENSPKRAHRLNIVLVEPRIPQNTGNISRTCAVTGAALHMVRPFGFEIDDKKLK 70

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           ++     + +      NL D      + G F                 ++  + ++ G E
Sbjct: 71  RAGLDYWDKLDIYYYDNLEDFFA--KNEGEFYFFTTKGRKVHSDAAYPEDKPVYIVFGRE 128

Query: 237 GKGLRPKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             GL  +           + M   +++LN+SN+ A+A Y     
Sbjct: 129 DAGLPEELLYAHPEECVRIPMRNTLRSLNLSNSVAIATYEVLRQ 172


>gi|291549085|emb|CBL25347.1| Predicted rRNA methylase (SpoU class) [Ruminococcus torques L2-14]
          Length = 164

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     + +      + 
Sbjct: 4   IVLYEPEIPANTGNIGRTCVATGTRLHLIEPLGFKLNEKSLKRAGMDYWKDLDVTTYIDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+   + G +    ++ + K            ++ G E  G+  +   E       +
Sbjct: 64  QDFLE--KNPGAKIYMATTKAHKVYTDVEYEPDCYIMFGKESAGIPEEILVEHEEDCMRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M G I++LN+ N+ A+ LY    QN FA
Sbjct: 122 PMNGDIRSLNLGNSVAIVLYEALRQNGFA 150


>gi|167750651|ref|ZP_02422778.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702]
 gi|167656330|gb|EDS00460.1| hypothetical protein EUBSIR_01628 [Eubacterium siraeum DSM 15702]
          Length = 168

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         I        +   L  +      ++       L
Sbjct: 5   IVLIEPQIPQNTGNIARTCAVTGARLHIVKPMGFQIDDKKLKHAGLDYWHYLDITYYDGL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D  ++     F         +         DK  ++ G E KGL  +      +     
Sbjct: 65  DDFFERNKDGEFFYFTT--KGRNTYCDAEYKDKTYIVFGREDKGLPEELLFHNKQHC--- 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M   +++LN+SN+ A+  Y     + 
Sbjct: 120 VRIPMGSNMRSLNLSNSVAIGAYEVLRQWG 149


>gi|288962013|ref|YP_003452323.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510]
 gi|288914293|dbj|BAI75779.1| RNA methyltransferase, TrmH family, group 2 [Azospirillum sp. B510]
          Length = 165

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P N G ++R A        +        +   L ++    ++H+ + R S+ 
Sbjct: 3   LVLFEPDIPQNTGTLMRLAAGLGVALDLIEPCGFLLDDRRLRRAGMDYIDHLDWTRHSSW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQETATSM 251
                       + + L++ +  P        + A    +++G E  G+  +  + A + 
Sbjct: 63  AAYCATPRD--GRLVLLTTRAAIPYTDF----RFAPGDRILVGRESAGVPDEVHDAADAR 116

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    ++LNV+ +AA+ L       A
Sbjct: 117 LLIPMMPPARSLNVAVSAAMVLGEALRQTA 146


>gi|148265317|ref|YP_001232023.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4]
 gi|146398817|gb|ABQ27450.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter uraniireducens Rf4]
          Length = 160

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               +VL     P N G I R   A S    +  K    ++   L ++       +    
Sbjct: 5   KPFHIVLVEPEIPPNTGNIARLCGATSTVLHLVGKLGFSTDDRALKRAGLDYWSEVDIHY 64

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             +L DAL+  +  G          +  +E E       ++ G E KGL  +  E    +
Sbjct: 65  WEDL-DALKSAYPGGRFIYTSKKVPRSYVEMEFTAGDF-IVFGKETKGLPDELIEANPDT 122

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + + G +++LN+S AA + LY     
Sbjct: 123 AVRIPIFGRVRSLNLSTAAGIVLYEALRQ 151


>gi|114563597|ref|YP_751110.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400]
 gi|114334890|gb|ABI72272.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           frigidimarina NCIMB 400]
          Length = 240

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 18/161 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        +   +  +  +   +A +A  +       R+ +L
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRAEPDGQSIALAAGASDILKNLTRVDSL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRP 242
            +A+          I  S+ S+               L QE  N  +A++ G E  GL  
Sbjct: 67  EEAIADCS----LVIATSARSRTLDWPMLDPREAGLKLTQESLNGPVAIVFGRENHGLSN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
           +  +  T    +       +LN++ A  +  Y T+  H A+
Sbjct: 123 EELQKCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQ 163


>gi|321463166|gb|EFX74184.1| hypothetical protein DAPPUDRAFT_307431 [Daphnia pulex]
          Length = 476

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 7/161 (4%)

Query: 38  QKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLP--HPFPVKT 95
           + SR       + L G   ++ A+N  +     +  +   L         P    + V+ 
Sbjct: 159 KSSRARKASGKILLEGERLIADAMNAGAYA-ETIFFSDTKLLTTLPLKKYPSIQLYQVQY 217

Query: 96  VPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAV 155
              Q    +     +  G+   T P  S   D   +  L ++ D++ DP N+G I+R A 
Sbjct: 218 GKIQLWSDLTTSPGI-MGIFDVTKPTNS---DIPHHIPLTIICDNIRDPGNMGTIIRCAA 273

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           A  C  +ITT        + + ++A+GA   I      +  
Sbjct: 274 AVGCKALITTPDCVDVWDSKVLRAAAGAHFRIKLALSVDWD 314



 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 231 LILGAEGKGLRPKTQETATS----MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L++G E  GL     + A         + +   + +LN   A  +  Y  +  F +
Sbjct: 412 LVIGGETHGLSSAAHKLAHEYGGLKVFIPLENKVDSLNAGVAVGILAYEFRRLFLQ 467


>gi|291521666|emb|CBK79959.1| Predicted rRNA methylase (SpoU class) [Coprococcus catus GD/7]
          Length = 169

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 3/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           ++ ++      H+ Y    N 
Sbjct: 5   IVLLEPEMPANTGNIGRTCVATGTKLHLIKPLGFEITDKMVKRAGLDYWPHLNYEVYENF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+K      +    ++ ++    +        L+ G E  G+  +   +       +
Sbjct: 65  EDFLEKNPDCIGKLYMATTKARHIYTEVAYEPDSYLMFGKESAGIPEEILVKYEDYCMRI 124

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFAK 282
            M   I++LN+SN+ A+ LY    Q+ FA+
Sbjct: 125 PMEYNIRSLNLSNSVAIVLYEALRQHQFAQ 154


>gi|83945697|ref|ZP_00958042.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83850898|gb|EAP88758.1| putative RNA methyltransferase, TrmH family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 173

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 14/147 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEHIPYIRI 192
             + ++ ++   N+GA++R+A AF    + T    + + +  + ++  +   E++PY   
Sbjct: 5   FAVGVEGISKARNLGAVMRTAHAFGGSFVFTVG--AANRAREMFQTDTAKTTENLPYYDW 62

Query: 193 SNLTD-ALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETAT 249
             + D AL      G Q +G+   D    L         A +LG E +G L P+  E   
Sbjct: 63  ETVDDMALP----RGCQIVGVELTDDAVELPSFRHPRMAAYVLGKE-RGDLSPEMLERCA 117

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  +     +   N+S AAA+ALY  
Sbjct: 118 HVVKIPTKFCV---NLSVAAAIALYDR 141


>gi|148253796|ref|YP_001238381.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146405969|gb|ABQ34475.1| putative tRNA/rRNA methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 158

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR          I              ++    L+H+ + R  + +       
Sbjct: 11  PQNTGTILRLCACLGLAAHIIEPAGFAVSDRQFRRAGMDYLDHLAWRRHDSWSAFEDWRA 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + +  ++ +              L+LG E  G+     E A +   + +   +++L
Sbjct: 71  AQGHRLLLFTTKAATSYLDFSYKADDILLLGRESAGVPDTVAEVADARLRIPLRPGLRSL 130

Query: 264 NV 265
           NV
Sbjct: 131 NV 132


>gi|42561144|ref|NP_975595.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492642|emb|CAE77237.1| rRNA Methylase (Spou-family) [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301321276|gb|ADK69919.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 181

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+GAI+R+ VA +    I        +   L++ ++   +++  IR  + 
Sbjct: 8   IVLYEPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRPSANEYKYVDCIRYDDW 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLR-PKTQETATSM 251
            D +            LS   +KP+        ND + L+ G E  G+  P  +E   + 
Sbjct: 68  NDFIT--KHPNITLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKEHYNTT 125

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++N   +A Y     
Sbjct: 126 FRIPMISETRSLNIANTVGIASYEVLRQ 153


>gi|308802576|ref|XP_003078601.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
 gi|116057054|emb|CAL51481.1| RNA methyltransferase TrmH, group 1 (ISS) [Ostreococcus tauri]
          Length = 232

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 32/158 (20%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA  RS  AF C  +        + S     +A GA   +     S   D L +    
Sbjct: 72  NVGAFARSCAAFECVDLRLVTPACDAGSRAALSAAKGAQGLVRVASSSGTFDTLVE---- 127

Query: 206 GFQTIGLSS------------DSKKPLEQ-----------EIKNDKIALILGAEGKGLRP 242
               +G SS            D     +            +++  K+AL+ G E  GL  
Sbjct: 128 --ALVGCSSAVAFHPWPSGDVDGAVTFDDLEALADAFPGGDVEGGKLALVFGNEADGLTK 185

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL---YITQ 277
           +      ++  + M  ++++L+V++A  +AL   Y  +
Sbjct: 186 EEIAACDAVCTIPMGRLVESLSVTHAGVIALSRYYERR 223


>gi|317057821|ref|YP_004106288.1| tRNA/rRNA methyltransferase SpoU [Ruminococcus albus 7]
 gi|315450090|gb|ADU23654.1| tRNA/rRNA methyltransferase (SpoU) [Ruminococcus albus 7]
          Length = 207

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 6/153 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +L +VL     P N G I R+         +        +   L ++     + +  
Sbjct: 41  RTHRLNIVLVEPRIPQNTGNISRTCAVTGAALHMVRPFGFEIDDKKLKRAGLDYWDKLDI 100

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQ-E 246
              +N+ D      + G      +   ++   + +  +   + +I G E  GL  +    
Sbjct: 101 YYYNNIEDFFA--KNDGAYFFFTT-KGRQVHSEAVYPEDRPVYIIFGREDAGLPEELLYA 157

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + M   +++LN+SN+ A+A Y     
Sbjct: 158 HPDECVRIPMRNTLRSLNLSNSVAIATYEVLRQ 190


>gi|197301465|ref|ZP_03166545.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC
           29176]
 gi|197299503|gb|EDY34023.1| hypothetical protein RUMLAC_00197 [Ruminococcus lactaris ATCC
           29176]
          Length = 169

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 7/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     + +      N 
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATGTRLHLIEPLGFRINEKSLKRAGMDYWKDLDVTTYINY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS---MA 252
            D L    + G +    ++ + K   +        ++ G E  G+  +            
Sbjct: 64  QDFLD--KNPGAKIYMATTKAHKVYTEVDYEQDCYIMFGKESAGIPEEIL--VDHEEDCM 119

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M G I++LN+ N+ A+ LY     
Sbjct: 120 RIPMIGDIRSLNLGNSVAIVLYEALRQ 146


>gi|226324158|ref|ZP_03799676.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758]
 gi|225207707|gb|EEG90061.1| hypothetical protein COPCOM_01937 [Coprococcus comes ATCC 27758]
          Length = 165

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            L ++     EH+      + 
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKNLKRAGMDYWEHLDVTTYIDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM---A 252
            D ++   + G +    ++ S              ++ G E  G+  +            
Sbjct: 64  RDFME--KNPGAKIYMATTKSPNLYTDVKYEPDCYIMFGKESAGIPEEIL--CHHKKDSI 119

Query: 253 HLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
            + M G I++LN+ N+ A+ LY    QN FA
Sbjct: 120 RIPMIGDIRSLNLGNSVAIVLYEALRQNGFA 150


>gi|123968533|ref|YP_001009391.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. AS9601]
 gi|123198643|gb|ABM70284.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. AS9601]
          Length = 160

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 11/147 (7%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I RS  AF+    +        E   L ++       +   +  N    L    
Sbjct: 11  PQNTGNIARSCAAFNIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNQYENFEKFLASKS 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----- 258
           +   + I  S  +   L+         L+ G E  GL     + +  +  + MP      
Sbjct: 71  TK--RIISFSKKNGLYLKDFKFKQDDILLFGREDSGLPDSIIDKSDFLISIFMPNIQTGN 128

Query: 259 ----IIKALNVSNAAAVALYITQNHFA 281
                +++LN+S A  +A+Y       
Sbjct: 129 NDQKGVRSLNLSVACGIAIYEAYKQIN 155


>gi|52079368|ref|YP_078159.1| rRNA methylase-like protein [Bacillus licheniformis ATCC 14580]
 gi|52784729|ref|YP_090558.1| hypothetical protein BLi00957 [Bacillus licheniformis ATCC 14580]
 gi|319646849|ref|ZP_08001078.1| CspR protein [Bacillus sp. BT1B_CT2]
 gi|52002579|gb|AAU22521.1| rRNA methylase homolog [Bacillus licheniformis ATCC 14580]
 gi|52347231|gb|AAU39865.1| CspR [Bacillus licheniformis ATCC 14580]
 gi|317391437|gb|EFV72235.1| CspR protein [Bacillus sp. BT1B_CT2]
          Length = 157

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++  +L ++     E +  +   +L
Sbjct: 5   VVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSL 64

Query: 196 TDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA 252
            +     H  G  F             +   +N+    + G E  GL  +  E       
Sbjct: 65  DELFDA-HPEGRFFFITKFGQKPHTSFDYSDQNEDYFFVFGRETNGLPKELIEQNMDRCL 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M   +++LN+SN AA+ +Y     
Sbjct: 124 RLPMTEHVRSLNLSNTAAILVYEALRQ 150


>gi|160946170|ref|ZP_02093381.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270]
 gi|158447693|gb|EDP24688.1| hypothetical protein PEPMIC_00132 [Parvimonas micra ATCC 33270]
          Length = 159

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GAI R+ VA      +        +  ++ +S     + +      N+ D  +   
Sbjct: 6   PFNTGAIGRTCVATDTKLHLIKPLGFSLDDKMVKRSGLDYWDKLKLFVYENIEDFYE--K 63

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSMAHLHMPGI 259
           +        ++ +K+  ++   +    ++ G E KG+  +      E       + M G 
Sbjct: 64  NPNANIYFSTTKAKRTYDKVEYSPNDYIMFGKESKGIPEEILVKNEEHC---VRIPMWGE 120

Query: 260 IKALNVSNAAAVALYITQNH 279
           I++LN+SN+ ++ LY     
Sbjct: 121 IRSLNLSNSVSIVLYEALRQ 140


>gi|46446016|ref|YP_007381.1| hypothetical protein pc0382 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399657|emb|CAF23106.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 148

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 10/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R+      D ++       +    L ++     E +    I NL
Sbjct: 3   IILFQPQIPQNAGNIVRTCAVTGTDLMMVHPLGFSTHDRWLKRAGLDYWEGVSVSFIENL 62

Query: 196 TDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSM 251
            + L+      F        +  ++     +       LI G+E  GL    QE      
Sbjct: 63  ENYLEN-QQASFYFFSSKATTLYTEVSYAADSF-----LIFGSETSGLPSIFQEKWGNRF 116

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   ++ LN++ +A +ALY     
Sbjct: 117 VKIPMKPKVRCLNLATSAGIALYEAWRQ 144


>gi|332706614|ref|ZP_08426675.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L]
 gi|332354498|gb|EGJ33977.1| putative rRNA methylase, group 2 [Lyngbya majuscula 3L]
          Length = 153

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A +    +            L ++      ++      + 
Sbjct: 4   VVLINPQIPPNTGNIARTCAATTTQLHLVGPLGFEISDRYLKRAGLDYWPYVDLKYHDSF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              +        + IG +        +     K  L+ G E  GL P   E   +   + 
Sbjct: 64  DAFVSYHQKQEGRWIGFTKRGTYNYIKFQFQPKDWLLFGCETTGLPPHVLEACQAKVFIP 123

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           M    +++LN+S +AA+ L+  +    
Sbjct: 124 MTQPGVRSLNLSVSAALGLFEARRQLG 150


>gi|189425147|ref|YP_001952324.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
 gi|189421406|gb|ACD95804.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter lovleyi SZ]
          Length = 154

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 2/145 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A +    +  K     +   L ++     + +   R  NL
Sbjct: 6   IVLIEPEIPPNTGNIARLCAATAATLHLVGKLGFSIDDRYLKRAGLDYWDKVDLKRWENL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
               Q+     F  +     ++   EQ I      L+ G E  GL              +
Sbjct: 66  EQLQQQHPEGRFWYLSTKV-ARNCYEQGIYQPGDFLVFGKETAGLPAELLLANQERCLTI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            MPG +++LN+SNAAAV LY     
Sbjct: 125 PMPGQVRSLNLSNAAAVVLYEALRQ 149


>gi|71065779|ref|YP_264506.1| tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
 gi|71038764|gb|AAZ19072.1| probable tRNA/rRNA methyltransferase [Psychrobacter arcticus 273-4]
          Length = 186

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 16/160 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E+       + 
Sbjct: 5   IVLVAPKMPSNTGNIIRLCANSGAQLHLVKPLGFELDDKKLRRAGLDYHEYAHLQVHDDW 64

Query: 196 TDALQKMHSWGFQTI-GLSSDSKKPLEQEIKND-------------KIALILGAEGKGLR 241
           + A Q +      TI  L++   KP                      +A++ G+E  GL 
Sbjct: 65  SVAKQALQDADCHTITALTTKLSKPFYDYDFGGQETAESGSEFSGNNVAMVFGSETAGLA 124

Query: 242 PKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +E   A +   L M    ++LN+SN+ A+ LY     
Sbjct: 125 DDIREDIGADNWLRLPMLADSRSLNLSNSVAICLYEVWRQ 164


>gi|331703597|ref|YP_004400284.1| tRNA/rRNA methyltransferase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802152|emb|CBW54306.1| Hypothetical tRNA/rRNA methyltransferase [Mycoplasma mycoides
           subsp. capri LC str. 95010]
          Length = 181

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+GAI+R+ VA +    I        +   L++ ++   +++  IR  + 
Sbjct: 8   IVLYQPEIAQNVGAIMRTCVAINARLHIIEPLGFIFDDRHLSRPSANEYKYVDCIRYDDW 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLR-PKTQETATSM 251
            D +            LS   +KP+        ND + L+ G E  G+  P  +E   + 
Sbjct: 68  NDFIT--KHPNVTLFCLSRYGQKPISDFDFSKINDNVYLVFGKESTGIAKPILKEHYNTT 125

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++N   +A Y     
Sbjct: 126 FRIPMISETRSLNIANTVGIASYEVLRQ 153


>gi|220911435|ref|YP_002486744.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219858313|gb|ACL38655.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 229

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 111 HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           H+ +  E        LD+ R++   + +++     NIG ++R+A AF    +    R   
Sbjct: 67  HEAIVAE--------LDSRRHN-FHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGRR-- 115

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDK 228
                  + A     +        + D +Q     G   IG+    DS  PLE       
Sbjct: 116 ---RWNRRGAMVTDRYQHVRHHPTVEDFVQWAQGEGLAIIGIDIFPDS-VPLETYELPRD 171

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
             L+ G EG GL P+  E A +   +   G  +++N
Sbjct: 172 CVLVFGQEGPGLTPEVHEAAQATLSIEQFGSTRSIN 207


>gi|319403813|emb|CBI77397.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498]
 gi|319406821|emb|CBI80454.1| RNA methyltransferase [Bartonella sp. 1-1C]
          Length = 158

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR +  F     I            L ++    LE     R  +    +  M  
Sbjct: 14  GNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGMDYLERASLERHLDWQSFIDTMQR 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  + + LS+ ++    +        L+ G E  G+     + A     + M    ++LN
Sbjct: 74  FNRRLLLLSTKAQTYYTEIYYQKNDVLLFGRESAGVPDYVYKAADYALTIPMLPHARSLN 133

Query: 265 VSNAAAVA 272
           ++ + A+ 
Sbjct: 134 LAISVAMV 141


>gi|167758642|ref|ZP_02430769.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704]
 gi|167663838|gb|EDS07968.1| hypothetical protein CLOSCI_00982 [Clostridium scindens ATCC 35704]
          Length = 163

 Score = 77.8 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            L ++     + +      + 
Sbjct: 4   IVLHEPEIPANTGNIGRTCVAANTRLHLIEPLGFRLNEKNLKRAGMDYWDKLDVTTYIDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D ++   +   +    ++ + K            ++ G E  G+  +   +       +
Sbjct: 64  DDFIR--RNPNAKIYMATTKATKAYTDVEYEPDCYIMFGKESAGIPEEILVKHKDDCIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M   I++LN+ N+ A+ LY    QN FA
Sbjct: 122 PMVPDIRSLNLGNSVAIVLYEALRQNAFA 150


>gi|116070592|ref|ZP_01467861.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. BL107]
 gi|116065997|gb|EAU71754.1| putative tRNA/rRNA methyltransferase (SpoU family) protein
           [Synechococcus sp. BL107]
          Length = 166

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 9/159 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
             + L + L     P N G I R+  AF     +        +   L ++      H+  
Sbjct: 6   PEAPLRVALFEPRIPPNTGNIARTCAAFQLPLSLIEPLGFQIDDRSLRRAGLDYWPHVQV 65

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +       +     + IG S      L +        L+ G E  GL    ++   
Sbjct: 66  STHGSFDALKDGLLPHN-RIIGCSRRGGSCLSEFEFQHGDVLLFGREDTGLPEDIRDQCH 124

Query: 250 SMAHLHMP--------GIIKALNVSNAAAVALYITQNHF 280
           S+  + MP        G +++LN+S A A+  Y+  +  
Sbjct: 125 SIVTIPMPGAAAPSGQGGVRSLNLSVACALVTYVAGHRL 163


>gi|6320091|ref|NP_010171.1| Trm3p [Saccharomyces cerevisiae S288c]
 gi|74627230|sp|Q07527|TRM3_YEAST RecName: Full=tRNA guanosine-2'-O-methyltransferase TRM3; AltName:
            Full=tRNA [Gm18] methyltransferase; AltName: Full=tRNA
            methylase 3
 gi|1431162|emb|CAA98680.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285810924|tpg|DAA11748.1| TPA: Trm3p [Saccharomyces cerevisiae S288c]
          Length = 1436

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            D V  S+L++V   V+ P N+G I R        G++T +             A  A   
Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRLCDVLGV-GLLTVQDIKVKNHPQFKNVAVTADRW 1337

Query: 187  IPYIRI--SNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +P   +    +   +++    G+  IGL  +  S K         K  ++LG E  G+  
Sbjct: 1338 MPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPG 1397

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                       +   G+I+++N+  A AV ++
Sbjct: 1398 TLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429


>gi|1199536|emb|CAA64900.1| ORF 2310 [Saccharomyces cerevisiae]
 gi|1903285|emb|CAA98679.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 482

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V  S+L++V   V+ P N+G I R        G++T +             A  A   
Sbjct: 325 DVVTRSELIVVSSLVDKPPNLGGICRLCDVLGV-GLLTVQDIKVKNHPQFKNVAVTADRW 383

Query: 187 IPYIRI--SNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +P   +    +   +++    G+  IGL  +  S K         K  ++LG E  G+  
Sbjct: 384 MPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPG 443

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                      +   G+I+++N+  A AV ++
Sbjct: 444 TLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 475


>gi|328352676|emb|CCA39074.1| hypothetical protein PP7435_Chr3-0102 [Pichia pastoris CBS 7435]
          Length = 1457

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 5/150 (3%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            + S L+++   V+ P N+G I R +      G++T       E       A  A + +P 
Sbjct: 1303 KRSDLIVMASLVDKPPNLGGICRLSDVLGA-GLLTLDDMRVKEHIQFKNVAVTADKWMPL 1361

Query: 190  IRI--SNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              +   N+   + +    G+  IGL  + DS +   +     K  ++LG E +G+     
Sbjct: 1362 EEVKKENIIGFMLRKKKQGYTLIGLEQTDDSVELNSELKFPKKSLIVLGMEKEGIPSSIL 1421

Query: 246  ETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                    +   G+I+++N+  A AV ++ 
Sbjct: 1422 AELDFCVEIKQVGVIRSMNIQTATAVIVHA 1451


>gi|325106948|ref|YP_004268016.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
 gi|324967216|gb|ADY57994.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces brasiliensis DSM
           5305]
          Length = 168

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I RS VA      +        +S  L ++     EH+ +  + + 
Sbjct: 21  VVLYQPEIPQNTGNIGRSCVAIGAKLWLIRPLGFQLDSRYLKRAGLDYWEHLDWEAVDSW 80

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            +  +++ +     +     SK P +       I L+ G+E  GL    + E A     L
Sbjct: 81  DEVKRRLPNSNVFCL-TKFGSKHPWDVSFAPGDI-LLFGSESSGLPVSIRGEYAGQCVRL 138

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+++ A   +Y     F 
Sbjct: 139 PMRTQVRSLNLASTANAIMYEAVRQFG 165


>gi|212640174|ref|YP_002316694.1| putative rRNA methylase (SpoU class) [Anoxybacillus flavithermus
           WK1]
 gi|212561654|gb|ACJ34709.1| Predicted rRNA methylase (SpoU class) [Anoxybacillus flavithermus
           WK1]
          Length = 160

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 6/155 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++N  L +VL     P N G I R+  A      +       ++  +L ++     +++ 
Sbjct: 1   MKNVALHVVLYQPEIPANTGNIARTCAATGTSLHLIRPLGFSTDDKMLKRAGLDYWDYVD 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGLRPKTQ 245
                +L +   K     F  I  +   K        +D+      + G E  GL     
Sbjct: 61  VHYYDSLQELFDKYKEGEFFFI--TKFGKTYYTSFDYSDQTKDYFFVFGRETSGLPKDLI 118

Query: 246 ET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E        + M   +++LN+SN AA+ +Y     
Sbjct: 119 ENNMERCLRIPMNEYVRSLNLSNTAAILVYEALRQ 153


>gi|126696336|ref|YP_001091222.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9301]
 gi|126543379|gb|ABO17621.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9301]
          Length = 160

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 11/147 (7%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I RS  AF     +        E   L ++       +   R  N    +    
Sbjct: 11  PQNTGNIARSCAAFDIPLNLIEPLGFKLEDKYLKRAGLDYWPLVTVNRYENFEKFMTAKT 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----- 258
           +   + I  S  +   L+         L+ G E  GL     + +  +  + MP      
Sbjct: 71  TK--RIISFSKKNGLYLKDFKFKQDDILLFGREDSGLPDSIIDKSDFLISIFMPNIQTGN 128

Query: 259 ----IIKALNVSNAAAVALYITQNHFA 281
                +++LN+S A  +A+Y       
Sbjct: 129 NDQKGVRSLNLSVACGIAIYEAHKQIN 155


>gi|306844547|ref|ZP_07477136.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1]
 gi|306275158|gb|EFM56914.1| tRNA/rRNA methyltransferase SpoU [Brucella sp. BO1]
          Length = 189

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 32  ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 91

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 92  PDWHCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 151

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 152 LIPMVRSARSLNLAVSVA 169


>gi|301095552|ref|XP_002896876.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108626|gb|EEY66678.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 664

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 179 SASGALEHIPYIRISNLTDALQKMH-----SWGFQTIGLS-SDSKKPLEQEIKNDKIALI 232
           SA+ A + +P  R +     +   H     + G+  + +  + S   L       K+ L+
Sbjct: 547 SAATAHKWMPLERSATSKVTIYDEHLCDGSAKGYTIVAVEQTASSVSLASYTLPRKMVLV 606

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
           LG E +G+  +  +       +   G++++LNV  + A+ L+  TQ   
Sbjct: 607 LGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGALVLWEYTQQQL 655


>gi|239832429|ref|ZP_04680758.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
 gi|239824696|gb|EEQ96264.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
           3301]
          Length = 154

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 4/142 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 2   ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDVSDRSLKRAGMDYLEQAALTRH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           ++           G + + LS+ +  P       +   L+ G E  G+     + A +  
Sbjct: 62  ADWRHFEDWRRQAGRRIVLLSTRAAVPYTDYQFQENDILLFGRESSGVPDTVHDAADARL 121

Query: 253 HLHMPGIIKALN----VSNAAA 270
            + M    ++LN    V+  A 
Sbjct: 122 LIPMMPGARSLNLAISVAMTAG 143


>gi|167747295|ref|ZP_02419422.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662]
 gi|167653273|gb|EDR97402.1| hypothetical protein ANACAC_02009 [Anaerostipes caccae DSM 14662]
          Length = 166

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 12/151 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           ++ ++     EH+      N 
Sbjct: 4   IVLHEPEMPANTGNIGRTCVACGAVLHLIEPLGFKLNEKMIKRAGLDYWEHLDVRTYVNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ----ETA 248
            D L+   +   +    ++ S++             + L+ G E  G+  +      ETA
Sbjct: 64  EDFLE--KNHHPKIYMATTKSRQTYADVTYGGADEDVYLMFGKESAGIPEEILLDYKETA 121

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I++LN+SN+ A+  Y     
Sbjct: 122 ---VRIPMLPEIRSLNLSNSVAIVAYEVLRQ 149


>gi|4104449|gb|AAD02043.1| tRNA/rRNA methyltransferase [Brucella abortus]
          Length = 159

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 2   ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G   + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 62  PDWNRFDAWRKNAGRGLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 121

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 122 LIPMVRSARSLNLAVSVA 139


>gi|326791033|ref|YP_004308854.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           lentocellum DSM 5427]
 gi|326541797|gb|ADZ83656.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           lentocellum DSM 5427]
          Length = 163

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 11/149 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +        +   + ++       +      + 
Sbjct: 4   IVLHEPEIPQNTGNIARTCAATGATLHLIEPLGFSLDEKQIKRAGLDYWHLVNVQTYKDY 63

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATS 250
            + L+K     + +    ++ S++        ++  ++ G E  G+  +      ET   
Sbjct: 64  EEFLEK---NNYPKVYMATTKSRQTYTDVSYEEECYIMFGKETAGIPEEILLDNKETC-- 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+SN+ A+ +Y     
Sbjct: 119 -IRVPMISEARSLNLSNSVAIVIYEALRQ 146


>gi|283851956|ref|ZP_06369232.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
 gi|283572680|gb|EFC20664.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
          Length = 156

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G++ R   A      +            L ++      H+      N 
Sbjct: 4   VVLFEPEIPQNTGSVARLCAATKTPLHLIKPLGFSLADRYLKRAGLDYWPHVNLTVWDNF 63

Query: 196 TDALQKMHSWGFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
            DA +       + +  +      +             AL+ G E +GL     +TA + 
Sbjct: 64  -DAFRAARPQS-RIVATTAGNRGHTPAAYHVFAYRPDDALVFGTESRGLPESLLDTAGAR 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQN 278
             + + G +++LN++NAA+V LY    
Sbjct: 122 LRIPIWGQVRSLNLANAASVVLYEALR 148


>gi|254496266|ref|ZP_05109159.1| RNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254354523|gb|EET13165.1| RNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 148

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 3/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        +   + ++     E        +  D +  + 
Sbjct: 12  PPNTGNIIRLCANSGAQLHLIHPLGFALDDKRMRRAGLDYHEWAMVQHYDDWDDFI--IK 69

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +   +    ++ +++     +   +  L+ G E +GL  + +        + M    ++L
Sbjct: 70  NPKRRIFCCTTKTQQSYCDVVYQPEDILLFGPETRGLPAEIRNQ-HESIRIPMVENSRSL 128

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+ L+      
Sbjct: 129 NLSNAVAIILFEAWRQL 145


>gi|260944646|ref|XP_002616621.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
 gi|238850270|gb|EEQ39734.1| hypothetical protein CLUG_03862 [Clavispora lusitaniae ATCC 42720]
          Length = 1423

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +  S L++V   V+   N+G I R        G++T        +A     A  A   +
Sbjct: 1267 EISRSDLIVVASLVDKAPNLGGICRLCDVLGA-GLMTLHDLKIKNNAQFKTVAVTADYWM 1325

Query: 188  PYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDKIALILGAEGKGLRPK 243
            P I +    + + L +  + G+  IGL  +D    L +++    K  ++LG E +G+  +
Sbjct: 1326 PMIEVKPHQIVEYLHQKKADGYTLIGLEQTDKSVVLNKDLQFPKKSLILLGREKEGIPGE 1385

Query: 244  TQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQN 278
                      +   GI++++N+  A AV    Y +QN
Sbjct: 1386 LLAELDLCVEIKQVGIVRSMNIQTATAVIVHAYASQN 1422


>gi|89889903|ref|ZP_01201414.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7]
 gi|89518176|gb|EAS20832.1| SpoU class rRNA methylase [Flavobacteria bacterium BBFL7]
          Length = 160

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G + RSA       + T  +      +  A      ++ +PY       D    + 
Sbjct: 21  PENLGVLWRSAQNLGASFVFTVGKR----YSKQACDTHDIVKAMPYFHYDTFEDFYNHLP 76

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G   IG+  D++    QE ++ +    +LGAE  GL  +  E +  +     P   K+
Sbjct: 77  K-GAMIIGVELDNRAIDLQEFRHPRNCVYLLGAEDHGLTNEAIEKSHHLIKFDTP---KS 132

Query: 263 LNVSNAAAVALYIT 276
           LNV+ A ++ +Y  
Sbjct: 133 LNVAVAGSIIMYDR 146


>gi|308172881|ref|YP_003919586.1| rRNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|307605745|emb|CBI42116.1| putative rRNA methylase [Bacillus amyloliquefaciens DSM 7]
 gi|328552521|gb|AEB23013.1| rRNA methylase [Bacillus amyloliquefaciens TA208]
 gi|328910919|gb|AEB62515.1| putative rRNA methylase [Bacillus amyloliquefaciens LL3]
          Length = 157

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++  +L ++     E +  +   +L
Sbjct: 5   VVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSL 64

Query: 196 TDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA 252
            +  +     G  F             +     + +  + G E  GL  +  E       
Sbjct: 65  DELFEAY-ENGKFFFITKFGQKPHTSFDYSNTEEDVFFVFGRETSGLPKELIENNMDRCL 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M   +++LN+SN AA+ +Y     
Sbjct: 124 RLPMTEHVRSLNLSNTAAILVYEALRQ 150


>gi|224002979|ref|XP_002291161.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972937|gb|EED91268.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 358

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              + ++LD+V   HN+G ILR A A   D +             + K+A GA E +   
Sbjct: 236 KHPITLILDNVRSAHNVGNILRLAEASQVDSVRLCGMTPRPPHPKVLKTAMGAAELVSLG 295

Query: 191 RIS---NLTDALQKMHSWGFQTIGL-SSDSKKPLEQ----EIKNDKIALILGAE 236
                 +    + ++ S G   IG+ ++++   L       + +  +A I G E
Sbjct: 296 DSEASLSTLQTVLELKSEGVTIIGVETTENSTTLWDANIPAVDDSPVAYIFGNE 349


>gi|328875258|gb|EGG23623.1| TAR RNA loop binding protein [Dictyostelium fasciculatum]
          Length = 1627

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 126  LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
            +D      +++V   V+   N+  I R+   F+ + ++ + R    E  +  + +  A  
Sbjct: 1474 MDQRSRQSIIIVATFVDKIPNLAGIARTGEIFNIESLVVSNRRIMKE-VMFQQISVSAER 1532

Query: 186  HIPYIRI--SNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRP 242
             +P   +   NLTD L    S G+  +G+   S    + +    +K  L+LG E +G+  
Sbjct: 1533 WLPIEEVSEENLTDYLMSKKSEGYSLLGIEQTSTSNCITEFQFPNKCVLLLGKEKEGIPT 1592

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +          +   G++++LNV  + ++ +
Sbjct: 1593 EYINLLDKCIEIPQLGVLRSLNVHVSGSIMI 1623


>gi|325662860|ref|ZP_08151429.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086576|ref|ZP_08335654.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470912|gb|EGC74141.1| hypothetical protein HMPREF0490_02169 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410409|gb|EGG89841.1| hypothetical protein HMPREF0987_01957 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 165

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            + ++     + +      + 
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKAIKRAGMDYWDQLDVTTYIDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+   + G +    ++ +              ++ G E  G+  +           +
Sbjct: 64  NDFLE--KNPGAKIYMATTKAPNVYTDVKYEPDCYIMFGKESAGIPEEILVHHKEDSIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M G I++LN+ N+ A+ LY    QN FA
Sbjct: 122 PMVGDIRSLNLGNSVAIVLYEALRQNQFA 150


>gi|261338711|ref|ZP_05966595.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM
           20093]
 gi|270276265|gb|EFA22119.1| SpoU rRNA methylase family protein [Bifidobacterium gallicum DSM
           20093]
          Length = 273

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 41/203 (20%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LDA       + +++     NIG+++R+A AF+ + +     +  +    L 
Sbjct: 63  TVEAIKADLDAQGRHGFEVAIENWTHDFNIGSMVRTANAFTANTVHIVGPHKWNRKGALM 122

Query: 178 KSASGALEHIPYIR--ISNLTDALQKM--------------------------------- 202
                 +EH P I+  + +    +++                                  
Sbjct: 123 TELYQHIEHHPSIQDLVDDWHRRIEQETCDATQRVAAATQALDQGTVPTMQAQQDLAQAT 182

Query: 203 ----HSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
                +   + I +       PLE+    ++  ++ GAEG GL  K  + A  + ++   
Sbjct: 183 HDLEAAQQARIIAMDIVPGAVPLERYEFPERCLMLFGAEGPGLSSKALDLADDVVYISQF 242

Query: 258 GIIKALNVSNAAAVALY-ITQNH 279
           G ++++N   AAAV+++     H
Sbjct: 243 GSVRSINAGAAAAVSMHAWIAQH 265


>gi|78777295|ref|YP_393610.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
 gi|78497835|gb|ABB44375.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas denitrificans DSM
           1251]
          Length = 156

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P+N GAI R  V       I        +   + ++       +      +L
Sbjct: 4   LVLVNPQIPNNTGAIGRLCVNAGASLHIIKPIAFDIDEKAVRRAGLDYWHKLDLHVWESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D  +  +         +  + KP  +   +D   +  G+E  G+  +   +       +
Sbjct: 64  EDFFKNNNIINNAHFATT-KTDKPYFEANFSDGDYIFFGSETAGIPEEILTKYKEQNITI 122

Query: 255 HMP--GIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  + LY     
Sbjct: 123 PMTKEGR--SLNLAISTGIVLYEAIRQ 147


>gi|284031554|ref|YP_003381485.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283810847|gb|ADB32686.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 175

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 14/136 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSE-----SAVLAKSASGALEHIPYIRISNLTDALQ 200
           N+G +LR+  A     +   K     E     + +  ++      H P   +++      
Sbjct: 41  NLGTLLRTCDATGA-CLAVPKLPWVPEALARGNTLRRRACVHWTGHNPVQWLAD------ 93

Query: 201 KMHSWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
           +        +G  L+ ++ +  +      +   +LG E  G+ P+  +    +  + M G
Sbjct: 94  QRKRDDTTVLGIELAEEAVRLADLPPARHRTVAVLGHERTGIPPEALDELDLVVEIPMIG 153

Query: 259 IIKALNVSNAAAVALY 274
              +LNV+ A ++ LY
Sbjct: 154 TGASLNVAVAGSLVLY 169


>gi|154685355|ref|YP_001420516.1| hypothetical protein RBAM_009210 [Bacillus amyloliquefaciens FZB42]
 gi|154351206|gb|ABS73285.1| CspR [Bacillus amyloliquefaciens FZB42]
          Length = 157

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++  +L ++     E +  +   +L
Sbjct: 5   VVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWEFVKVVYHDSL 64

Query: 196 TDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA 252
            +  +     G  F             +     +    + G E  GL  +  E       
Sbjct: 65  EELFEAY-ENGKFFFITKFGQKPHTSFDYSNTEEDFFFVFGRETSGLPKELIENNMDRCL 123

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M   +++LN+SN AA+ +Y     
Sbjct: 124 RLPMTEHVRSLNLSNTAAILVYEALRQ 150


>gi|317471039|ref|ZP_07930414.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
 gi|316901480|gb|EFV23419.1| RNA methyltransferase [Anaerostipes sp. 3_2_56FAA]
          Length = 166

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 14/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           ++ ++     EH+      N 
Sbjct: 4   IVLHEPEMPANTGNIGRTCVACGAVLHLIEPLGFKLNEKMIKRAGLDYWEHLDVRTYVNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ----ETA 248
            D L+   +   +    ++ S++             + L+ G E  G+  +      ETA
Sbjct: 64  EDFLE--KNHHPKIYMATTKSRQTYADVTYGGADEDVYLMFGKESAGIPEEILLDYKETA 121

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
                + M   I++LN+SN+ A+  Y    Q  F
Sbjct: 122 ---VRIPMLPEIRSLNLSNSVAIVAYEVLRQQRF 152


>gi|168002156|ref|XP_001753780.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695187|gb|EDQ81532.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 206

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 9/154 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G+I R+  A      +        + + L  +      ++      + 
Sbjct: 27  VVLVSPQIPGNSGSIARTCAATGVGLHLVEPLGYKIDGSKLKSTGLEYWPYVVVKVHKSW 86

Query: 196 TDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS--- 250
            D            + +  + + +             L+ G+E  GL     E +T+   
Sbjct: 87  NDFFTYFQEQNGEKRLLAYTKNGQYVHTDVQYKAGDWLLFGSEVDGLPAAALEQSTTGQY 146

Query: 251 ---MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
                 L M    +++LN+S +A + +Y      
Sbjct: 147 AGGTIRLPMSEEYVRSLNLSISAGIGVYEALRQL 180


>gi|153212559|ref|ZP_01948306.1| rRNA methylase, SpoU family [Vibrio cholerae 1587]
 gi|153825535|ref|ZP_01978202.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2]
 gi|229513615|ref|ZP_04403079.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21]
 gi|229521760|ref|ZP_04411178.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229524673|ref|ZP_04414078.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229527380|ref|ZP_04416772.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
           12129(1)]
 gi|254285885|ref|ZP_04960847.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226]
 gi|262190923|ref|ZP_06049138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT
           5369-93]
 gi|124116430|gb|EAY35250.1| rRNA methylase, SpoU family [Vibrio cholerae 1587]
 gi|149740820|gb|EDM54911.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-2]
 gi|150424067|gb|EDN16006.1| rRNA methylase, SpoU family [Vibrio cholerae AM-19226]
 gi|229335012|gb|EEO00497.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
           12129(1)]
 gi|229338254|gb|EEO03271.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae bv.
           albensis VL426]
 gi|229341354|gb|EEO06358.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TM
           11079-80]
 gi|229349492|gb|EEO14448.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae TMA 21]
 gi|262033190|gb|EEY51713.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae CT
           5369-93]
 gi|327485167|gb|AEA79574.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae
           LMA3894-4]
          Length = 158

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFIEYLQRE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
            G F+    ++ + +            L+ G E +GL  +   +  A     + M    +
Sbjct: 74  RGSFRVFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|255544240|ref|XP_002513182.1| 23S rRNA methyltransferase, putative [Ricinus communis]
 gi|223547680|gb|EEF49173.1| 23S rRNA methyltransferase, putative [Ricinus communis]
          Length = 234

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 19/166 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           RN  L +VL     P N G I R+  A +    +        +S  L ++      ++  
Sbjct: 49  RNKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDSTKLKRAGLDYWPYVVV 108

Query: 190 IRISNLTDALQKMHSW-------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
               + T+                F   G ++ S+    +        LI G+E  GL P
Sbjct: 109 KVHESWTEFQDYFRQQEGDKRLLAFTKRGTATHSEFLYRKGDY-----LIFGSETSGLPP 163

Query: 243 KTQETAT------SMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           +  +             + M    ++ LN+S +  +ALY       
Sbjct: 164 EALQDCKNEPFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLN 209


>gi|332967964|gb|EGK07051.1| RNA methyltransferase [Desmospora sp. 8437]
          Length = 180

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 3/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              + L     P+N G I R+         +       +E   L +S       +     
Sbjct: 28  PFHICLVEPEIPNNTGNIARTCAVTGSVLHLIRPLGFSTEDKYLKRSGMDYWYKVDVRYY 87

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSM 251
            +  +        G +    ++ +++        +    + G E KGL P+  ET   + 
Sbjct: 88  DSFAEFTASF--PGGRFFCATTKAQRSYTSFSYREGDIFVFGKESKGLPPEILETYRDTN 145

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M  ++++ N+ N+AA+ LY     
Sbjct: 146 IRIPMRPVVRSHNLGNSAAIILYEALRQ 173


>gi|170751018|ref|YP_001757278.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657540|gb|ACB26595.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium radiotolerans
           JCM 2831]
          Length = 176

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 45/138 (32%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A        I            L +S    L+H+   R  +         
Sbjct: 39  PQNTGTMLRMAACLGLAVEIVEPAGFDVSDRHLRRSGLDYLDHVAITRHRSFAAFAAWRA 98

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + +  ++    P           L++G E  G+       A +   + +   +++L
Sbjct: 99  EAGIRLVLATTAGAVPYTDFAFRPDDCLMVGRESAGVPEAVHAAADARIVVPIRPGLRSL 158

Query: 264 NVSNAAAVALYITQNHFA 281
           NV+ AAA+          
Sbjct: 159 NVAVAAAMIAGEALRQVG 176


>gi|317126367|ref|YP_004100479.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
 gi|315590455|gb|ADU49752.1| tRNA/rRNA methyltransferase (SpoU) [Intrasporangium calvum DSM
           43043]
          Length = 234

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 6/138 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +R     + +++     NIG+++R+A A +        R          + A     + 
Sbjct: 80  DLRRHDFHVAVENWGHDFNIGSVIRTANAMNAKAFHIVGRR-----RWNRRGAMVTDRYQ 134

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 +     +   S G   +G+       P+E         L+ G EG GL    + 
Sbjct: 135 HEHHHPDAGSFAEWARSGGLAIVGIDNLPGSVPVETWDLPRHCVLVFGQEGPGLSAAMRA 194

Query: 247 TATSMAHLHMPGIIKALN 264
               + H+   G  +++N
Sbjct: 195 ECEVVLHIEQFGSTRSIN 212


>gi|302852751|ref|XP_002957894.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
           nagariensis]
 gi|300256771|gb|EFJ41030.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
           nagariensis]
          Length = 701

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
            L+VLD V DP N+G++ RSA+AF  DG+          +    +S+ GAL  +P +   
Sbjct: 438 RLLVLDAVQDPGNLGSLARSALAFGWDGLFLLPGCCDPFNDKALRSSRGALLRLPTV-TG 496

Query: 194 NLTDALQKMHSWGFQTIGLSS 214
           +L + L+     G   +    
Sbjct: 497 DLVELLEVAEEVGLVLLCADM 517



 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 212 LSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
            +++ + P  Q       +AL+LG+EG GL    +    +   + M G +++LNV  A  
Sbjct: 590 AAAEEEVPASQGAPWAGGVALVLGSEGGGLSADVRRVC-APISVPMEGAMESLNVGVAGG 648

Query: 271 VALYI 275
           V ++ 
Sbjct: 649 VLMFA 653


>gi|261378516|ref|ZP_05983089.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC
           14685]
 gi|269145065|gb|EEZ71483.1| RNA methyltransferase, TrmH family, group 2 [Neisseria cinerea ATCC
           14685]
          Length = 154

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 2   FTIVLYQPEIPPNTGNIIRLCANTGADLHLIKPLGFPLDSAKMKRAGLDYHEFASLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++        L+ G E +GL     ++  A   
Sbjct: 62  NFDDCLKAL--AGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAVQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  AV L+     
Sbjct: 120 IRLPMQPGSRSMNLSNTVAVILFEAWRQ 147


>gi|150864630|ref|XP_001383531.2| hypothetical protein PICST_82718 [Scheffersomyces stipitis CBS 6054]
 gi|149385886|gb|ABN65502.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 1408

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 5/152 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             V  S L++V   V+ P N+G I R        G++T               A  A   +
Sbjct: 1252 EVVRSDLIVVSSLVDKPPNLGGICRLCDVLGA-GLLTLNDIKVKSHPQFKNVAVTADYWM 1310

Query: 188  PYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDKIALILGAEGKGLRPK 243
            P I +   ++   L++    G+  IGL  +D    L  E+    K  ++LG E +G+   
Sbjct: 1311 PMIEVKPEDIKMYLREKKREGYTLIGLEQTDKSVELNNELQFPKKSLILLGREKEGVPGD 1370

Query: 244  TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                      +   G+I+++N+  A A+ ++ 
Sbjct: 1371 LLAELDFCVEIKQVGVIRSMNIQTATAIIVHA 1402


>gi|294497237|ref|YP_003560937.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM
           B1551]
 gi|295702608|ref|YP_003595683.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium
           DSM 319]
 gi|294347174|gb|ADE67503.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium QM
           B1551]
 gi|294800267|gb|ADF37333.1| RNA methyltransferase, TrmH family, group 2 [Bacillus megaterium
           DSM 319]
          Length = 152

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++  +L ++     E +  +   +L +  +K  
Sbjct: 8   PANTGNIARTCAATNTTLHLVRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLEEVFEKYP 67

Query: 204 SWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIK 261
             GF  I           +          + G E KGL     E        L M   ++
Sbjct: 68  EAGFYFITKFGQQPHTTFDYSDLEQDHFFVFGRETKGLPKHIIEENMERCLRLPMTENVR 127

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 128 SLNLSNTAAILIYEALRQ 145


>gi|292493437|ref|YP_003528876.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus
           halophilus Nc4]
 gi|291582032|gb|ADE16489.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus
           halophilus Nc4]
          Length = 171

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        +L
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGAHLHLIQPLGFDLDDRRLRRAGLDYHEWARVKVHPSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
               +++     Q    SS  ++P ++   +   AL+ G E +GL  K   T +   +  
Sbjct: 64  EHFSRRVQPR--QVWACSSRGQQPYDKAHFHPGDALLFGPETRGLPRKLLNTLSPKQVLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SNA AV LY     
Sbjct: 122 IPMLPASRSLNLSNAVAVVLYEAWRQ 147


>gi|163867933|ref|YP_001609137.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017584|emb|CAK01142.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 158

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 47/127 (37%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR +  F     I            L ++    LE+    R  +    +  M  
Sbjct: 14  GNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGLDYLEYASLERHIDWQHFISSMKR 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  + + LS+ +K    Q        L+ G E  G+     E+A     + M    ++LN
Sbjct: 74  FNRRLLLLSTKAKTCYTQICYQKNDVLLFGRESAGVPDYVHESADYTLKIPMQPQSRSLN 133

Query: 265 VSNAAAV 271
           ++ + A+
Sbjct: 134 LAMSVAI 140


>gi|254501987|ref|ZP_05114138.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438058|gb|EEE44737.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 209

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 10/146 (6%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + ++   N+G ++RSA AF      T         A  + ++  +  H+P     +  D 
Sbjct: 38  EGLSKRMNLGTLMRSAHAFGASFFFTVDAEQKIRRAPKSDTSK-SPGHLPTFDWDS-VDT 95

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRPKTQETATSMAHLHM 256
           +      G Q +G+   + + ++       +  A +LG E   L P+  E    +  +  
Sbjct: 96  MDLPR--GCQLVGIEL-TDESIDLPSFGHPLQAAYVLGPERGSLSPQMLERCDHVVKIPT 152

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
              I   NV+ A A+ +Y       +
Sbjct: 153 KFCI---NVAMAGAIVMYDRHRAMGR 175


>gi|110005185|emb|CAK99512.1| putative trna /rrna methyl transferase protein [Spiroplasma citri]
          Length = 174

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAI+R+ VA +    +        +   + +S++  ++   Y   ++    LQ   +
Sbjct: 18  QNVGAIMRTCVAINAKLHLIEPFGFIFDERFITRSSANYVDFADYETYNDWNHFLQL--N 75

Query: 205 WGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIK 261
              +    +  +++P         +KI ++ G E  G+      E       + M   ++
Sbjct: 76  PNLKLYCATRYAQQPHSAIDFTKDEKIFILFGRESTGIPTAILKEHLARTFRIPMSEKVR 135

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LNV+N   +  Y      
Sbjct: 136 SLNVANTVGIVGYEIMRQL 154


>gi|322818883|gb|EFZ26166.1| hypothetical protein TCSYLVIO_7669 [Trypanosoma cruzi]
          Length = 559

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 5/169 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             H   +      Q  ++ S  + + L G   +             L+  + +     W 
Sbjct: 112 ERHELIQHFVRLRQNPKYRSSKQMMILGGREVLRELFEEGHTPRHLLI--RGSQEVPSWA 169

Query: 85  ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   +  V     +    G +       +   P     +   +    ++VLD+V+D
Sbjct: 170 KKKGVETEIVRVDRHVAEVCAPGNDGYIGDFDIPPPPAKENLIANKQRFDRVLVLDNVDD 229

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
           P  +G +LR+A  F  D IITT   +      + +SA GA     +P  
Sbjct: 230 PGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARGAHFQKAVPIY 278


>gi|154520210|gb|ABS82777.1| RNA methyltransferase [uncultured Methylophaga sp.]
          Length = 154

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 4/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        +   L ++     E  P    ++     Q   
Sbjct: 12  PPNTGNIIRLCANTGAQLHLIEPLAFVLDDKRLRRAGLDYHEFAPVKVHADFAAFQQWQQ 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-SMAHLHMPGIIK 261
           +        ++ +K+   Q    D+  L+ G E +GL     +         + M    +
Sbjct: 72  NR--PLFACTTKAKQFHHQATFIDESILLFGPESRGLPATLLDNLPDRQKIRIPMYPESR 129

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN+SNA A+ LY      
Sbjct: 130 SLNLSNATAIILYEAWRQL 148


>gi|323141072|ref|ZP_08075977.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414448|gb|EFY05262.1| RNA methyltransferase, TrmH family, group 2 [Phascolarctobacterium
           sp. YIT 12067]
          Length = 170

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A  C   +        E   L ++       +      ++
Sbjct: 14  IVLVEPEIPGNTGNIARLCAATGCHLHLVRPLGFSVEDKYLKRAGLDYWHLVDIHYYDSV 73

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L+K          L++ +              LI G E  GL         E+    
Sbjct: 74  YEVLEKYKDN--PKYFLTTKAHSSYADVQYAQDSLLIFGKETAGLPETLLHEYPESC--- 128

Query: 252 AHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
             + M    ++LN+SN+ A+  Y    QN FA
Sbjct: 129 IRIPMIEDARSLNLSNSVAIVAYEALRQNGFA 160


>gi|328883657|emb|CCA56896.1| tRNA or rRNA methyltransferase [Streptomyces venezuelae ATCC 10712]
          Length = 220

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 7/148 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD  R     + +++     NIG+++R+A AF    +    R          
Sbjct: 57  TREAVVADLDT-RRHDFHVAVENWGHDFNIGSVVRTANAFLAKEVHIVGRR-----RWNR 110

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +       +         + G   IG+       PLE+ +   +  L+ G E
Sbjct: 111 RGAMVTDRYQHVRHHPDTESLTSWAAAEGIPVIGIDNLPGAVPLERTVLPRRCVLLFGQE 170

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G GL  + +     +  +   G  +++N
Sbjct: 171 GPGLTEEARAHVEMVCSIAQFGSTRSIN 198


>gi|111226655|ref|XP_641892.2| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium
            discoideum AX4]
 gi|90970700|gb|EAL67904.2| tRNA/rRNA methyltransferase SpoU family protein [Dictyostelium
            discoideum AX4]
          Length = 1680

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 141  VNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYIRIS--NLT 196
            + +  NI  ++R+   F+ + +        S  +     + +  A + +P I ++  NL 
Sbjct: 1531 IENTPNIAGLIRTCEIFNVEEVAIPNNKLLSDPQFQ---RVSVSAEKWVPTIEVTKPNLL 1587

Query: 197  DALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L+     G+  +G+   S  K L      +K  L+LG E  G+  +          + 
Sbjct: 1588 DYLKLKKKQGYSILGVEQTSQSKRLSSFQFPNKCLLLLGQEQNGIPAEYLSIIDYAVEIE 1647

Query: 256  MPGIIKALNVSNAAAVALYI 275
              G I++LNV  + ++ ++ 
Sbjct: 1648 QLGQIRSLNVHVSGSIVIWE 1667


>gi|262273462|ref|ZP_06051276.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222440|gb|EEY73751.1| tRNA (cytosine34-2'-O-)-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 188

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 50/170 (29%), Gaps = 4/170 (2%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           L+    PL    L     S   + L       N G I+R A    C   +        E 
Sbjct: 16  LSAYIRPLYCAFLFGESASMFHIALHEPQIAPNTGNIIRLAANTGCKLHLIEPLGFNFEE 75

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             L ++     +     R  +    L  M     +    ++   +P            + 
Sbjct: 76  KKLRRAGLDYHDLTNITRYPDYATFLDAMGDR--RIFACTTKGSRPHSDINYQAGDVFLF 133

Query: 234 GAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G+E  GL    +          + M    ++LN++N+ +V  Y       
Sbjct: 134 GSETSGLPDDIRNAFSPDHRIRVPMLPNNRSLNLANSVSVVCYEAWRQLG 183


>gi|153828346|ref|ZP_01981013.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39]
 gi|148876176|gb|EDL74311.1| rRNA methylase, SpoU family [Vibrio cholerae 623-39]
          Length = 158

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFIEYLQRE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
            G F+    ++ + +            L+ G E +GL  +   +  A     + M    +
Sbjct: 74  RGSFRVFACTTKTTQHHVDAQFQPGDVLLFGPETRGLPAELIASLPAEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|117923674|ref|YP_864291.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
 gi|117607430|gb|ABK42885.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
          Length = 174

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 6/165 (3%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P  S     + ++ L +VL     P N G I R   A      +        ++A L ++
Sbjct: 8   PDASAPAPTLPDTLLHVVLYRPEIPPNTGNIQRICAATGAMLHLVGPIAFRLDNAALKRA 67

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEG 237
                + +   R  +    L+ M   G + I +S+ + +          D+  L+ G+EG
Sbjct: 68  GMDYRQWVDVQRYDDWAHCLR-MQPLGVRWIPISTKATQGYHTMRYQAGDR--LLFGSEG 124

Query: 238 KGLRPKT-QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            GL  +  Q    +   + M    ++LN++N  AV LY       
Sbjct: 125 SGLPAEIHQALGHNAVRVPMLPRARSLNLANTVAVVLYEALRQLN 169


>gi|271502514|ref|YP_003335540.1| tRNA/rRNA methyltransferase SpoU [Dickeya dadantii Ech586]
 gi|270346069|gb|ACZ78834.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech586]
          Length = 154

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R A    C   +        E   L ++     +     R  N  D LQ +   
Sbjct: 14  NTGNIIRLAANNGCSLHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHRNYQDFLQAV--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
           G +    ++   +P ++        L+ G+E  GL  + +      +   + M    ++L
Sbjct: 72  GQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPDEIRNGFAPENRIRIPMEPNCRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SN+ A+  Y     
Sbjct: 132 NLSNSVAIISYEAWRQ 147


>gi|169831211|ref|YP_001717193.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638055|gb|ACA59561.1| RNA methyltransferase, TrmH family, group 2 [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 153

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +VL     P N G I R+  A      ++    +S S +  L ++       +      +
Sbjct: 4   VVLVEPEIPQNTGNIARTCAATGSVLHLVHPLGFSVS-NRYLKRAGLDYWHLVEVHHHPS 62

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAH 253
             +  ++     F     +   ++  +    +    L+ G E  GL  +  E  A     
Sbjct: 63  FDEVCRRYPDRPFF-FATARRGRRYTDARYPDGSF-LVFGKETTGLPAELLEANAEQCVR 120

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L      ++LN+SNA AV +Y     
Sbjct: 121 LPQREPARSLNLSNAVAVLVYEALRQ 146


>gi|66808737|ref|XP_638091.1| hypothetical protein DDB_G0285499 [Dictyostelium discoideum AX4]
 gi|60466535|gb|EAL64587.1| hypothetical protein DDB_G0285499 [Dictyostelium discoideum AX4]
          Length = 1677

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             +++V   ++   N+  + R+   F+ + ++ +      ++         A + +P   +
Sbjct: 1525 SIIIVASFIDKIPNLAGLARTCEIFNIECLVVSDLK-IRDNKEFQNITVTAEKWLPMEEV 1583

Query: 193  S--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +  +L   L    S G+  +G+  + S   L +     K  L+LG E +G+  +      
Sbjct: 1584 AENDLKQYLLLKKSQGYSLLGVEQTSSSVLLNKFEFPQKSVLVLGKEKEGIPTEFINLLD 1643

Query: 250  SMAHLHMPGIIKALNVSNAAAVALY-ITQNHFAK 282
                +   GII++LNV  + ++ ++   +    K
Sbjct: 1644 KCIEIPQLGIIRSLNVHVSGSLMIWDYFRQQLNK 1677


>gi|295397737|ref|ZP_06807808.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294974023|gb|EFG49779.1| RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 171

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 7/154 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++   L ++       +     +NL
Sbjct: 5   IVLFEPEIPANTGNIARTCAATDTHLHLIEPLGFKTDDKHLKRAGLDYWNAVDITYHANL 64

Query: 196 TDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
              ++ +       +        S        ++  I L+ G E  GL     +      
Sbjct: 65  DAFMEYLGDNQLYLVTKFANHVYSDIDYGNNDQDQDIFLMFGKETTGLPEAFMRAHEDQC 124

Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNH--FAK 282
             + M    +++LN+SN AA+ +Y  Q    F K
Sbjct: 125 IRIPMDDTHVRSLNLSNCAALVIYEVQRQQSFNK 158


>gi|258404583|ref|YP_003197325.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
 gi|257796810|gb|ACV67747.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
          Length = 152

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 1/144 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A +    +        E   L ++      H+      + 
Sbjct: 3   IVLFEPEIPPNTGNIGRLCAATTTPLHLIEPLGFRLEDRYLKRAGLDYWPHLDLTVWPDW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                 + S G + +  S+             +  ++LG E  GL     E A  +  + 
Sbjct: 63  PSFCDSLPS-GARLVASSARQGAAYHTVAFRTEDYIVLGPESSGLPSAICEQAAELVRIP 121

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           + G +++LN++NA +V LY     
Sbjct: 122 IWGQVRSLNLANATSVLLYEALRQ 145


>gi|149186958|ref|ZP_01865266.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
 gi|148829347|gb|EDL47790.1| tRNA/rRNA methyltransferase [Erythrobacter sp. SD-21]
          Length = 150

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 50/135 (37%), Gaps = 2/135 (1%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G ++R          +      P +   + ++A   ++H+  +R  +      +   
Sbjct: 12  GNVGNVMRLGACMGAGVDLIEPLGFPWDDRRVRRAAMDYIDHVEVVRHVSFEAF--RAAR 69

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +  ++ + +            L+ G E  G+    +    +   L M   +++LN
Sbjct: 70  AGQRLVLFTTRATQSSYDFAYRPDDILLFGKESAGVTDAVRACVDASVRLPMKPEVRSLN 129

Query: 265 VSNAAAVALYITQNH 279
           ++ +A +AL      
Sbjct: 130 LATSAGLALGEALRQ 144


>gi|225620368|ref|YP_002721625.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225215187|gb|ACN83921.1| RNA methyltransferase [Brachyspira hyodysenteriae WA1]
          Length = 164

 Score = 77.0 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 3/152 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  +++ L     P N G I R  V  +    I +K      S  + ++     EH+  +
Sbjct: 9   NFNIIIALYRPEIPANTGNIGRLCVGLNIPLHIVSKPSFIISSKEVKRAGLDYWEHLQLV 68

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +  N    L+  +S   + + ++   K   ++   ++   L+ G E  GLR    E    
Sbjct: 69  KHENENTFLEYCNSNNKRIVPITKFGKHRYDEFQYSNNDILLFGRESTGLRESLWEN-DL 127

Query: 251 --MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               ++ M   I+++NVSN AA+  Y    H 
Sbjct: 128 ENSVYIPMSDNIRSINVSNTAAIVAYEAYRHI 159


>gi|296121726|ref|YP_003629504.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
 gi|296014066|gb|ADG67305.1| tRNA/rRNA methyltransferase (SpoU) [Planctomyces limnophilus DSM
           3776]
          Length = 156

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 58/149 (38%), Gaps = 7/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P N G I R+ VA      +        ++  L ++       + Y+ + +L
Sbjct: 8   VVLYQPDIPQNTGNIGRTCVAVGARLWLIRPLGFVLDARHLKRAGMDYWPMLDYVVVDSL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHL 254
            D  +++    F  +   + + + + +        L+ G+E +GL P   E     M  L
Sbjct: 68  NDVREQLPGHDFWYV--ENPAPRRIWEAEFKPGSVLVFGSESRGLPPAVIEECRGQMIDL 125

Query: 255 HMPGIIKALNVS--NAAAVALYITQNHFA 281
            M   +++LN++     AV  Y       
Sbjct: 126 PMRPEVRSLNLASTVNTAV--YEAIRQIG 152


>gi|330807038|ref|YP_004351500.1| RNA-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375146|gb|AEA66496.1| Putative RNA-methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 151

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+    R ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLQRHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ +     +    ++   +P          A + G E +GL  +  +   A     
Sbjct: 64  ASCLESLGHP--RLFAFTTKGSRPFHDASFVAGDAFLFGPESRGLPAEVLDALPADQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AVA+Y    QN FA
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQNGFA 151


>gi|298492795|ref|YP_003722972.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298234713|gb|ADI65849.1| RNA methyltransferase, TrmH family, group 2 ['Nostoc azollae' 0708]
          Length = 153

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 7/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R+  A   +  +            L ++      ++      ++
Sbjct: 4   IVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFEISDRYLKRAGLDYWPYVKLHYHESM 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALIL-GAEGKGLRPKTQETATSMA 252
                     G + +G +          Q   +D    +L G+E  GL      T  S  
Sbjct: 64  EAFQTIHQQRGGRLLGFTVRGSFNYINYQFQADD---WLLYGSETTGLPATVLSTCDSTL 120

Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNHFA 281
           ++ +    +++LN+S + A+ L+ ++    
Sbjct: 121 YIPIDEPGVRSLNLSISVAIGLFESRRQLG 150


>gi|323341718|ref|ZP_08081951.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464143|gb|EFY09336.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 170

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 4/149 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ VA      +        +   + +S     + +   R  + 
Sbjct: 4   VVLYEPEIPQNTGNIMRTCVASGAALHLIEPLGFILDEKRVKRSVMDYSDDLNLTRHLDW 63

Query: 196 TDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
              L+ +    F     G  + S       ++ D I L+ G E  G+      E      
Sbjct: 64  ESFLKTVKGPVFYLTRYGEYTHSDFDYSAIVETD-IYLVFGKESTGIPKSILKENYDHCF 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M    +++N+SN  A+ ++       
Sbjct: 123 RIPMAPNARSMNLSNTVAICVFEVLRQIG 151


>gi|222149356|ref|YP_002550313.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
 gi|221736340|gb|ACM37303.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
          Length = 161

 Score = 76.6 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 45/136 (33%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR A        I            L ++    L  +   R  N         
Sbjct: 23  PGNTGTILRLAACLGLGVDIIEPAGFDLSDRNLKRAGMDYLAAVTLTRHVNWAQFEDWRK 82

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + +  S+ +  P  +        L+ G E  G+     + A +   + M    +++
Sbjct: 83  NSGRRLVLASTKAAMPYTELAFQPDDILLFGRESAGVPDHVHDGADARILIPMVEGQRSI 142

Query: 264 NVSNAAAVALYITQNH 279
           NV+ +AA+        
Sbjct: 143 NVAMSAAMIAGEALRQ 158


>gi|218509319|ref|ZP_03507197.1| probable RNA methylase protein [Rhizobium etli Brasil 5]
          Length = 83

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            +   GF    LS   K  +       ++AL++G EG+GL           A +     +
Sbjct: 2   ALAERGFAIWTLSPHGKTDIRAIPAAARMALVVGTEGEGLPEALLARF-QSARIPQSDEL 60

Query: 261 KALNVSNAAAVALYITQNHFAK 282
            +LN + A  +AL+   +   +
Sbjct: 61  DSLNAATATGIALFSMASAMGR 82


>gi|302307217|ref|NP_983802.2| ADL294Cp [Ashbya gossypii ATCC 10895]
 gi|299788893|gb|AAS51626.2| ADL294Cp [Ashbya gossypii ATCC 10895]
          Length = 1372

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 7/157 (4%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            DAV+ S L++V   V+ P N+G I R +      G++T               A  A   
Sbjct: 1215 DAVKRSDLIVVASLVDKPPNLGGICRLSDVLGV-GLMTVHDLRVKSHPQFKNVAVTADRW 1273

Query: 187  IPY--IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDKIALILGAEGKGLRP 242
            +P   + ++++   +++    G+  IGL  +D    L+       K  ++LG E +G+  
Sbjct: 1274 MPIEEVAVADIASFMRQKKLEGYTLIGLEQTDKSVRLDAAFHFPRKSLILLGTEAEGIPG 1333

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277
                       +   G+I+++N+  A AV +  Y  Q
Sbjct: 1334 YLLVELDMCLEIKQHGVIRSMNIQTATAVVVHSYAVQ 1370


>gi|227499734|ref|ZP_03929834.1| tRNA methylase [Anaerococcus tetradius ATCC 35098]
 gi|227218201|gb|EEI83464.1| tRNA methylase [Anaerococcus tetradius ATCC 35098]
          Length = 152

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G I R+ V       +            L ++     E +  +   +L
Sbjct: 4   IVLISPEHPGNVGNIGRTCVLTESRLHLIRPFKFDFSDRFLKRAGIDYWEKVDLVIHDSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            + ++ +    +  I   SD KK  +   K+    LI G E +G+     +     +  +
Sbjct: 64  EEFMEFVKDKRYFLIETPSD-KKYTDVSFKDGDY-LIFGREKEGIDESLLKANKDKILTI 121

Query: 255 HMPGIIK-ALNVSNAAAVALYITQNH 279
            M   I  +LN++N+ ++ LY     
Sbjct: 122 PMTKKIDRSLNLANSVSIVLYEALRQ 147


>gi|169349687|ref|ZP_02866625.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552]
 gi|169293762|gb|EDS75895.1| hypothetical protein CLOSPI_00425 [Clostridium spiroforme DSM 1552]
          Length = 169

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I+R+ VA +    I        +   + ++    ++ +      N 
Sbjct: 4   IVLVHPAIPQNTGNIMRTCVATNTVLHIIKPMSFDLDDKKMKRAGLDYVKDLDLRVYENY 63

Query: 196 TDALQKMHSWG----FQTIG----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-E 246
            + ++   + G    F           D               L  G E  G+  +   +
Sbjct: 64  EEFVR--KNPGEYHFFTRYSHLCFTDQDFSDSSTDHY------LFFGHEHDGIPKEILTK 115

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              S   + M   +++LN+SN AA+ +Y     
Sbjct: 116 HLDSCLRIPMSDKVRSLNLSNCAAICIYEVLRQ 148


>gi|326385630|ref|ZP_08207264.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209964|gb|EGD60747.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 150

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 2/135 (1%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GA+LR          +        +   + ++A   ++H+   R ++       + +
Sbjct: 12  GNVGAVLRLGACLGAAVDLIEPMGFTWDDRRVRRAAMDYIDHVTIARHADFDAFRATIGA 71

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                +  +  ++   +   + D I L+ G E  G+     +  T+   + M   ++++N
Sbjct: 72  QRL-VLFTTKSAESVYDFAFRPDDI-LLFGKESAGVPAPVSDACTARIRIPMRPEVRSMN 129

Query: 265 VSNAAAVALYITQNH 279
           ++ +A +AL      
Sbjct: 130 LAMSAGLALGEALRQ 144


>gi|269796792|ref|YP_003316247.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
 gi|269098977|gb|ACZ23413.1| rRNA methylase [Sanguibacter keddieii DSM 10542]
          Length = 237

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 6/138 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R   L + +++     NIG+++R+A AF+   I    R          + A     + 
Sbjct: 85  DTRRHPLHVAIENWGHDLNIGSVVRTANAFAAAEIHIVGRR-----RWNRRGAMVTDRYQ 139

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++   L      G   +G+        +E+    ++  ++ G EG GL P+ + 
Sbjct: 140 HVRHHPDVEAFLAWAQDAGLPVVGIDNVPGSVAIERYAFPERCVMLFGQEGAGLTPEARS 199

Query: 247 TATSMAHLHMPGIIKALN 264
            +  + H+   G  +++N
Sbjct: 200 ASVDLVHITQFGSTRSIN 217


>gi|254293112|ref|YP_003059135.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254041643|gb|ACT58438.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 152

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+  R A  FS    I      P  +  L +SA      +   +  + T       
Sbjct: 11  PQNLGSNFRIAACFSTKVDIIGPCGFPLTAKALRRSAMDYGPMVDVEQHDSWTSFKNSPD 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + +  ++    PL +        L+ G E  G+  +  ++A     + +    ++L
Sbjct: 71  RKKGRLVLFTTKGATPLLETKFESGDTLLFGRESAGVPDEVHDSAQIRCVIPLNPEARSL 130

Query: 264 NVSNAAAVALYITQNH 279
           NVS +AA+AL+     
Sbjct: 131 NVSVSAAIALHEALRQ 146


>gi|15676192|ref|NP_273324.1| RNA methyltransferase [Neisseria meningitidis MC58]
 gi|261400498|ref|ZP_05986623.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica
           ATCC 23970]
 gi|296313717|ref|ZP_06863658.1| RNA methyltransferase, TrmH family, group 2 [Neisseria
           polysaccharea ATCC 43768]
 gi|313669261|ref|YP_004049545.1| tRNA/rRNA methyltransferase [Neisseria lactamica ST-640]
 gi|7225492|gb|AAF40722.1| RNA methyltransferase, TrmH family [Neisseria meningitidis MC58]
 gi|254671569|emb|CBA09217.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha153]
 gi|269209758|gb|EEZ76213.1| RNA methyltransferase, TrmH family, group 2 [Neisseria lactamica
           ATCC 23970]
 gi|296839640|gb|EFH23578.1| RNA methyltransferase, TrmH family, group 2 [Neisseria
           polysaccharea ATCC 43768]
 gi|308388487|gb|ADO30807.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha710]
 gi|309379777|emb|CBX21553.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006723|emb|CBN88193.1| putative tRNA/rRNA methyltransferase [Neisseria lactamica 020-06]
 gi|316985198|gb|EFV64150.1| spoU rRNA Methylase family protein [Neisseria meningitidis H44/76]
 gi|325128977|gb|EGC51828.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           N1568]
 gi|325130994|gb|EGC53721.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           OX99.30304]
 gi|325135071|gb|EGC57699.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M13399]
 gi|325137093|gb|EGC59689.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M0579]
 gi|325141104|gb|EGC63607.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           CU385]
 gi|325145261|gb|EGC67540.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M01-240013]
 gi|325199471|gb|ADY94926.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           H44/76]
 gi|325202905|gb|ADY98359.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M01-240149]
 gi|325205352|gb|ADZ00805.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M04-240196]
 gi|325207296|gb|ADZ02748.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           NZ-05/33]
          Length = 154

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 2   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++        L+ G E +GL     ++  A   
Sbjct: 62  NFDDCLKAL--AGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  AV L+     
Sbjct: 120 IRLPMQPGSRSMNLSNTVAVILFEAWRQ 147


>gi|54027361|ref|YP_121603.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54018869|dbj|BAD60239.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 235

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 7/152 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF+   +    R          + A     +   
Sbjct: 82  RRHPFHVAIENFAHDANIGTVVRTANAFAAAAVHIVGRR-----RWNRRGAMVTDRYQHI 136

Query: 190 IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              +++ +        G   + +       PLE      +  L+ G EG G+    ++ A
Sbjct: 137 RHHADVAELRDFADRTGLTVVAVDNVPGAVPLETVELPRECLLLFGQEGPGVTEPAKQAA 196

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +   G  +++N   AA +A++   + H
Sbjct: 197 AMTVSIAQFGSTRSINAGVAAGIAMHAWIRTH 228


>gi|296535160|ref|ZP_06897385.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296264512|gb|EFH10912.1| TrmH family RNA methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 77

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 209 TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           T+   +      E   ++  I L++G E +GL   +     +   L   G +++LNVS A
Sbjct: 1   TVAAVARGGVAPEALPRDRPIVLVMGNEEQGLPEASIAACAARVTLPGSGAVESLNVSVA 60

Query: 269 AAVALYIT 276
           AAV ++  
Sbjct: 61  AAVLMHAL 68


>gi|239623216|ref|ZP_04666247.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522182|gb|EEQ62048.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 167

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            L ++     + +     S+ 
Sbjct: 3   VVLLEPEMPSNTGNIGRTCVATQTRLHLIEPLGFKLNEKALKRAGLDYWDKLDVTVYSDY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L++      +    ++ + K            L+ G E  G+  +   E       +
Sbjct: 63  QDFLERNPDALGRMYFATTKAHKVYSDMKYETDCYLMFGKESAGIPEEILVENEDHCVRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+SN+ ++ LY     
Sbjct: 123 PMWGDIRSLNLSNSVSIVLYEALRQ 147


>gi|160878312|ref|YP_001557280.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
 gi|160426978|gb|ABX40541.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
           ISDg]
          Length = 166

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+ VA      +        +   + ++     + +      N  D L+   
Sbjct: 11  PANTGNIGRTCVATGTKLHLIEPLGFRLDEKEIKRAGLDYWKDLDVTVYENYDDFLR--R 68

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKA 262
           +   +    ++ ++    +        ++ G E  G+  +   E   +   + M G I++
Sbjct: 69  NPNAKIYMATTKARHVYTEVSYEPDCFIMFGKESAGIPEEILLENKETSIRIPMIGDIRS 128

Query: 263 LNVSNAAAVALYITQNH 279
           LN+SN+ A+ LY     
Sbjct: 129 LNLSNSVAIVLYEALRQ 145


>gi|196250736|ref|ZP_03149424.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           G11MC16]
 gi|196209815|gb|EDY04586.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           G11MC16]
          Length = 157

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 6/151 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +       ++  +L ++      ++     
Sbjct: 2   PLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISYY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETA- 248
            ++ +   +    G +   ++   ++  +    +D+   I  + G E  GL  +  E   
Sbjct: 62  DSIDELFARF--PGGEFYFITKFGQQYYDSFDFSDQKKDIFFVFGRETTGLPKELLEANK 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   +++LN+SN AA+ +Y     
Sbjct: 120 DRCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|138894170|ref|YP_001124623.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2]
 gi|134265683|gb|ABO65878.1| rRNA methylase [Geobacillus thermodenitrificans NG80-2]
          Length = 157

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 6/151 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +       ++  +L ++      ++     
Sbjct: 2   PLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISYY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETA- 248
            ++ +   +    G +   ++   ++  +    +D+   I  + G E  GL  +  E   
Sbjct: 62  DSIDELFARF--PGGEFYFITKFGQQYYDSFDFSDQEKDIFFVFGRETTGLPKELLEANK 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   +++LN+SN AA+ +Y     
Sbjct: 120 DRCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|317153031|ref|YP_004121079.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
 gi|316943282|gb|ADU62333.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 150

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 2/144 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   L ++      H+      + 
Sbjct: 3   IVLYQPEIPPNTGNIARLCAATRTPLHLIEPLGFTIDDKHLRRAGLDYWPHVDVTVHPDF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L ++     + +  S+ +  P  +       A+++G E +GL             + 
Sbjct: 63  DDFLTRVSPA--RLVLASTRATAPHHRFAFRPDDAIVMGPETRGLPADMLARYPDGVRIP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           + G +++LN+S A  V L+     
Sbjct: 121 IWGEVRSLNLSTATGVLLFEALRQ 144


>gi|261325606|ref|ZP_05964803.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
 gi|261301586|gb|EEY05083.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
          Length = 171

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR          +            L ++    LE     R 
Sbjct: 14  ELRVALYQPDIPGNTGTILRMVACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 73

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 74  PDWNCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 133

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 134 LIPMVRSARSLNLAVSVA 151


>gi|148652780|ref|YP_001279873.1| tRNA/rRNA methyltransferase SpoU [Psychrobacter sp. PRwf-1]
 gi|148571864|gb|ABQ93923.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter sp. PRwf-1]
          Length = 180

 Score = 76.2 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 14/156 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P+N G+ +R          +        +   L ++     E+       N 
Sbjct: 5   IVLVHPKIPNNTGSAIRLCANTGAQLHLVEPLGFDLDDKKLRRAGLDYHEYAAMQVHKNW 64

Query: 196 TDALQKMHSWG-FQTIGLSSDSKKPLEQEIKND-------KIALILGAEGKGLRPKTQET 247
             A + + + G  + + L++    P  +    D        IAL+ G+E  GL    +  
Sbjct: 65  QVAKEALQAAGCHKMVALTTKLSHPFYEYDFGDSNAAEHESIALVFGSETAGLADDIR-- 122

Query: 248 ATS----MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A         L M    ++LN++N+ ++ LY     
Sbjct: 123 ADIGESNWLRLPMLPDSRSLNLANSISICLYEVWRQ 158


>gi|325289856|ref|YP_004266037.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965257|gb|ADY56036.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
           8271]
          Length = 156

 Score = 76.2 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 3/152 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +L +VL     P N G I R       D  +       ++   L ++       +   
Sbjct: 2   TGRLNIVLVEPEIPPNTGNIARLCAVVGADLHLVKPLGFKTDDKSLKRAGLDYWHRLKMT 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
              +  D   +  + G +    ++  K    +    +   LI G E KGL P+       
Sbjct: 62  IYEDFDDF--EARNPGGKRYLATTKGKIIYSETTFEEGCYLIFGRETKGLSPEILARYPE 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +  L M    ++LN+SNA A+  Y     + 
Sbjct: 120 HLIRLPMKNECRSLNLSNAVAIVTYEVFRQWG 151


>gi|254472132|ref|ZP_05085532.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062]
 gi|211958415|gb|EEA93615.1| RNA methyltransferase, TrmH family [Pseudovibrio sp. JE062]
          Length = 186

 Score = 76.2 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 9/140 (6%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + ++   N+G ++R+  AF      T   +     A +    S + +H+PY    N  D 
Sbjct: 10  EGLSKSMNVGTLMRTGHAFGASYFFTVDAHIKGLGAAMKADTSKSPDHLPYFAW-NSVDE 68

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRPKTQETATSMAHLHM 256
           +Q     G + +G+   +   +E       +  A ILG E   L  + QE    +  +  
Sbjct: 69  MQFPR--GCKLVGVEL-TDDAIELPSFGHPLQAAYILGPERGSLSKEMQERCDYIVKIPT 125

Query: 257 PGIIKALNVSNAAAVALYIT 276
                 LNV  AAA+ LY  
Sbjct: 126 KFC---LNVGVAAALVLYDR 142


>gi|238881479|gb|EEQ45117.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1443

 Score = 76.2 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 5/156 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +  S+L++V   V+ P N+G I R        G++T               A  A + +
Sbjct: 1287 EIPRSELIVVSSLVDKPPNLGGICRLCDVLGA-GLLTLHDIEVKNHINFKTVAVTADQWM 1345

Query: 188  PYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243
            P I +   N+   L      G+  IGL  +D    L  ++K   K  +++G E +G+   
Sbjct: 1346 PMIEVKMENIKQYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKEREGIPGD 1405

Query: 244  TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                      +   GI++++N+  A A+ ++   + 
Sbjct: 1406 LLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1441


>gi|68491281|ref|XP_710551.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
            SC5314]
 gi|68491304|ref|XP_710540.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
            SC5314]
 gi|46431756|gb|EAK91286.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
            SC5314]
 gi|46431768|gb|EAK91297.1| potential tRNA (Gm18) ribose methyltransferase [Candida albicans
            SC5314]
          Length = 1440

 Score = 76.2 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 5/156 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +  S+L++V   V+ P N+G I R        G++T               A  A + +
Sbjct: 1284 EIPRSELIVVSSLVDKPPNLGGICRLCDVLGA-GLLTLHDIEVKNHINFKTVAVTADQWM 1342

Query: 188  PYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243
            P I +   N+   L      G+  IGL  +D    L  ++K   K  +++G E +G+   
Sbjct: 1343 PMIEVKMENIKQYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKEREGIPGD 1402

Query: 244  TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                      +   GI++++N+  A A+ ++   + 
Sbjct: 1403 LLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1438


>gi|71405533|ref|XP_805376.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70868764|gb|EAN83525.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 559

 Score = 76.2 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 5/169 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             H   +      Q  ++ S  + + L G   +             L+  + +     W 
Sbjct: 112 ERHDLIQHFVRLRQNPKYRSSKQMMILGGREVLRELFEEGHTPRHLLI--RGSQEVPSWA 169

Query: 85  ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   +  V     +    G +       +   P     +   +    ++VLD+V+D
Sbjct: 170 KKKGLETEIVRVDRHVAEVCAPGNDGYIGDFDIPPPPAKENLIANKQRFDRILVLDNVDD 229

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
           P  +G +LR+A  F  D IITT   +      + +SA GA     +P  
Sbjct: 230 PGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARGAHFQKAVPIY 278


>gi|313763452|gb|EFS34816.1| conserved domain protein [Propionibacterium acnes HL013PA1]
 gi|313773427|gb|EFS39393.1| conserved domain protein [Propionibacterium acnes HL074PA1]
 gi|313793838|gb|EFS41867.1| conserved domain protein [Propionibacterium acnes HL110PA1]
 gi|313801228|gb|EFS42486.1| conserved domain protein [Propionibacterium acnes HL110PA2]
 gi|313811442|gb|EFS49156.1| conserved domain protein [Propionibacterium acnes HL083PA1]
 gi|313816634|gb|EFS54348.1| conserved domain protein [Propionibacterium acnes HL059PA1]
 gi|313822264|gb|EFS59978.1| conserved domain protein [Propionibacterium acnes HL036PA1]
 gi|313831181|gb|EFS68895.1| conserved domain protein [Propionibacterium acnes HL007PA1]
 gi|313834842|gb|EFS72556.1| conserved domain protein [Propionibacterium acnes HL056PA1]
 gi|314914611|gb|EFS78442.1| conserved domain protein [Propionibacterium acnes HL005PA4]
 gi|314920660|gb|EFS84491.1| conserved domain protein [Propionibacterium acnes HL050PA3]
 gi|314924560|gb|EFS88391.1| conserved domain protein [Propionibacterium acnes HL036PA3]
 gi|314930430|gb|EFS94261.1| conserved domain protein [Propionibacterium acnes HL067PA1]
 gi|314957364|gb|EFT01467.1| conserved domain protein [Propionibacterium acnes HL002PA1]
 gi|314966004|gb|EFT10103.1| conserved domain protein [Propionibacterium acnes HL082PA2]
 gi|314968370|gb|EFT12469.1| conserved domain protein [Propionibacterium acnes HL037PA1]
 gi|314974060|gb|EFT18156.1| conserved domain protein [Propionibacterium acnes HL053PA1]
 gi|314978785|gb|EFT22879.1| conserved domain protein [Propionibacterium acnes HL072PA2]
 gi|314981817|gb|EFT25910.1| conserved domain protein [Propionibacterium acnes HL110PA3]
 gi|315081118|gb|EFT53094.1| conserved domain protein [Propionibacterium acnes HL078PA1]
 gi|315083439|gb|EFT55415.1| conserved domain protein [Propionibacterium acnes HL027PA2]
 gi|315087006|gb|EFT58982.1| conserved domain protein [Propionibacterium acnes HL002PA3]
 gi|315089181|gb|EFT61157.1| conserved domain protein [Propionibacterium acnes HL072PA1]
 gi|315090685|gb|EFT62661.1| conserved domain protein [Propionibacterium acnes HL110PA4]
 gi|315094896|gb|EFT66872.1| conserved domain protein [Propionibacterium acnes HL060PA1]
 gi|315095235|gb|EFT67211.1| conserved domain protein [Propionibacterium acnes HL038PA1]
 gi|315099080|gb|EFT71056.1| conserved domain protein [Propionibacterium acnes HL059PA2]
 gi|315104168|gb|EFT76144.1| conserved domain protein [Propionibacterium acnes HL050PA2]
 gi|315106687|gb|EFT78663.1| conserved domain protein [Propionibacterium acnes HL030PA1]
 gi|315108913|gb|EFT80889.1| conserved domain protein [Propionibacterium acnes HL030PA2]
 gi|327329570|gb|EGE71329.1| rRNA methyltransferase [Propionibacterium acnes HL096PA3]
 gi|327333955|gb|EGE75671.1| rRNA methyltransferase [Propionibacterium acnes HL097PA1]
 gi|327444570|gb|EGE91224.1| conserved domain protein [Propionibacterium acnes HL043PA1]
 gi|327446242|gb|EGE92896.1| conserved domain protein [Propionibacterium acnes HL013PA2]
 gi|328752004|gb|EGF65620.1| conserved domain protein [Propionibacterium acnes HL020PA1]
 gi|328757793|gb|EGF71409.1| conserved domain protein [Propionibacterium acnes HL025PA2]
          Length = 79

 Score = 76.2 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 209 TIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            +         L+   ++      IA ++G E  GL    +  A  +  + M G  ++LN
Sbjct: 3   VLAADG-GGHSLDVVARSGCLKRPIAWLMGNEAWGLPEADRALADEIVGVPMWGAAESLN 61

Query: 265 VSNAAAVALYITQN 278
           +S AAAV LY T +
Sbjct: 62  LSTAAAVVLYATAS 75


>gi|220913205|ref|YP_002488514.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
 gi|219860083|gb|ACL40425.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter chlorophenolicus
           A6]
          Length = 155

 Score = 76.2 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +          A L ++     +         L DA + + 
Sbjct: 12  PGNTGNAIRLAAITGAELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVHPTLEDAWRHLQ 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    +SD               L+ G E  GL    +     T+   L M   ++
Sbjct: 72  PE--RVYAFTSDGTASYTDIAYQPGDVLMFGRESDGLPAGVKSDPHVTATVRLPMLPALR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++NAA++A+Y     
Sbjct: 130 SLNLANAASIAVYEAWRQ 147


>gi|257066256|ref|YP_003152512.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
 gi|256798136|gb|ACV28791.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
           20548]
          Length = 152

 Score = 76.2 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G I R+ V       +            L ++     EH+  +   +L
Sbjct: 4   IVLISPEHPGNVGNIGRTCVLTESRLHLIRPFKFDFSDRFLKRAGIDYWEHVDLVIHDSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + +  +    +  I   + ++K        D   LI G E +G+      E    +  +
Sbjct: 64  EEFMDYVKDKRYFLI--ETGTQKKYSDVNFEDGDFLIFGREKEGIPDDLLNENKEKIITI 121

Query: 255 HMPGIIK-ALNVSNAAAVALYITQNH 279
            M   I  +LN++N+ ++ LY     
Sbjct: 122 PMTKKIDRSLNLANSVSIVLYEALRQ 147


>gi|299537613|ref|ZP_07050906.1| putative tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus fusiformis ZC1]
 gi|298726982|gb|EFI67564.1| putative tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus fusiformis ZC1]
          Length = 157

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 6/151 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+    +    +       ++  +L ++       +  +  
Sbjct: 2   PLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWHSVNIVYH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ-ETA 248
            +L D ++   +     I   SD  +P  +   +D+   I  + G E  GL      E  
Sbjct: 62  DSLEDFIEYSKNGDVYLIETYSD--EPFTKNDFSDQDRDIYFMFGKETTGLPKDFAYERR 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +     +++LN+SN AA+ +Y     
Sbjct: 120 DMCLRIPQSDHVRSLNLSNTAAIVIYEALRQ 150


>gi|78223582|ref|YP_385329.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens
           GS-15]
 gi|78194837|gb|ABB32604.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter metallireducens
           GS-15]
          Length = 158

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 3/151 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 +VL     P N G I R   A      +  K    ++   L ++       +  
Sbjct: 3   EKPPFHIVLIEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEVEI 62

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L  ALQ  +  G         +K  +E   K     ++ G E  GL  +  E   
Sbjct: 63  HYWDDLA-ALQHAYPEGRFIYTSKKAAKTHIEAAFKEGDF-IVFGKETVGLPEELIEANR 120

Query: 250 S-MAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + + G +++LN+S +A + LY     
Sbjct: 121 ENTVRIPIFGKVRSLNLSTSAGIVLYEALRQ 151


>gi|15642690|ref|NP_232323.1| rRNA methylase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121586619|ref|ZP_01676404.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80]
 gi|121726684|ref|ZP_01679909.1| rRNA methylase, SpoU family [Vibrio cholerae V52]
 gi|147674422|ref|YP_001218183.1| rRNA methylase [Vibrio cholerae O395]
 gi|153820202|ref|ZP_01972869.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457]
 gi|153821286|ref|ZP_01973953.1| rRNA methylase, SpoU family [Vibrio cholerae B33]
 gi|227082811|ref|YP_002811362.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2]
 gi|229507257|ref|ZP_04396762.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX
           330286]
 gi|229509821|ref|ZP_04399302.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33]
 gi|229516943|ref|ZP_04406389.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9]
 gi|229606764|ref|YP_002877412.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|254851231|ref|ZP_05240581.1| rRNA methylase [Vibrio cholerae MO10]
 gi|255744345|ref|ZP_05418297.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101]
 gi|262158545|ref|ZP_06029660.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|262170061|ref|ZP_06037750.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27]
 gi|298500489|ref|ZP_07010293.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK
           757]
 gi|9657291|gb|AAF95836.1| rRNA methylase, SpoU family [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549178|gb|EAX59211.1| rRNA methylase, SpoU family [Vibrio cholerae 2740-80]
 gi|121630845|gb|EAX63227.1| rRNA methylase, SpoU family [Vibrio cholerae V52]
 gi|126509257|gb|EAZ71851.1| rRNA methylase, SpoU family [Vibrio cholerae NCTC 8457]
 gi|126521218|gb|EAZ78441.1| rRNA methylase, SpoU family [Vibrio cholerae B33]
 gi|146316305|gb|ABQ20844.1| rRNA methylase, SpoU family [Vibrio cholerae O395]
 gi|227010699|gb|ACP06911.1| rRNA methylase, SpoU family [Vibrio cholerae M66-2]
 gi|227014583|gb|ACP10793.1| rRNA methylase, SpoU family [Vibrio cholerae O395]
 gi|229346006|gb|EEO10978.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC9]
 gi|229353295|gb|EEO18234.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae B33]
 gi|229354762|gb|EEO19683.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae BX
           330286]
 gi|229369419|gb|ACQ59842.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|254846936|gb|EET25350.1| rRNA methylase [Vibrio cholerae MO10]
 gi|255737870|gb|EET93263.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholera CIRS 101]
 gi|262021469|gb|EEY40181.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae RC27]
 gi|262029706|gb|EEY48355.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio cholerae INDRE
           91/1]
 gi|297540658|gb|EFH76715.1| RNA methyltransferase, TrmH family, group 2 [Vibrio cholerae MAK
           757]
          Length = 158

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFIEYLQRE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
            G F+    ++ + +            L+ G E +GL  +   +  A     + M    +
Sbjct: 74  RGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|224373275|ref|YP_002607647.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola
           AmH]
 gi|223589470|gb|ACM93206.1| RNA methyltransferase, TrmH family, group 2 [Nautilia profundicola
           AmH]
          Length = 152

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 7/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R  V       I            + ++     + +      + 
Sbjct: 4   IVLFNPQIPPNTGNIGRLCVNAGAKLHIVKPIGFDISEKAVKRAGLDYWDKLDLTVWEST 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSMAHL 254
            + L+ + +   +    ++ + KP  +        +I G+E KG+     ++   +   +
Sbjct: 64  DEFLKHVDTS--RCFFATTKTDKPYFEVEYKPGDYIIFGSETKGIDENILRQNFDNCITI 121

Query: 255 HMP--GIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  + LY     
Sbjct: 122 PMTKEGR--SLNLAVSTGIILYEAIRQ 146


>gi|167755443|ref|ZP_02427570.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402]
 gi|237733671|ref|ZP_04564152.1| RNA methyltransferase [Mollicutes bacterium D7]
 gi|167704382|gb|EDS18961.1| hypothetical protein CLORAM_00957 [Clostridium ramosum DSM 1402]
 gi|229383269|gb|EEO33360.1| RNA methyltransferase [Coprobacillus sp. D7]
          Length = 169

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I+R+ VA +    I        +   + ++    ++ +      N 
Sbjct: 4   IVLVHPAIPQNTGNIMRTCVATNTSLHIIKPMSFELDDKKMKRAGLDYVKDLNLYVYENY 63

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAH 253
            +  QK    + F T             + K +   L  G E  G+  +   +       
Sbjct: 64  EEFEQKNPGEYHFFTRYSHLCYTDQDFSDDKKEHY-LFFGHEHDGIPKEILTKHLDRCLR 122

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M   +++LN+SN AA+ +Y     
Sbjct: 123 IPMSDKVRSLNLSNCAAICIYEVLRQ 148


>gi|270159513|ref|ZP_06188169.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289165686|ref|YP_003455824.1| rRNA methylase [Legionella longbeachae NSW150]
 gi|269987852|gb|EEZ94107.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288858859|emb|CBJ12781.1| putative rRNA methylase [Legionella longbeachae NSW150]
          Length = 148

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     +  N 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFSLQEKALRRAGLDYHEWACISQYENW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              + +      Q    S+ ++K   +     +   + G E  GL  +  +  TS+  + 
Sbjct: 64  DTFILQHQQK--QIYACSASAEKCYSKVQYASEDMFLFGPESNGLPKEIVQKFTSL-FIP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           M    ++LN+SNA AV LY       
Sbjct: 121 MREHNRSLNLSNAVAVILYEAWRQLG 146


>gi|227541826|ref|ZP_03971875.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182269|gb|EEI63241.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 161

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V +H   P N G  +R          +        E   L ++     +        +L
Sbjct: 11  VVFEHPVIPPNTGNAIRMCAGTGAHLHLIRPLGFDLEDRHLRRAGLDYHDLARVTVHDSL 70

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L  +   G +    +      L          L+ G E  GL  +       T    
Sbjct: 71  DACLATL--PGARVFAFTGHCSNMLFDVRFAPGDVLLFGTEPTGLTDEAMNHDRVTQKVR 128

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNAAAVA Y       
Sbjct: 129 IPMLEGRRSMNLSNAAAVATYEAWRQLG 156


>gi|563845|emb|CAA86559.1| unnamed protein product [Bacillus circulans subsp. alkalophilus]
          Length = 144

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 3/142 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++   L ++       +      + 
Sbjct: 5   IVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
            +  QK     F     S+ + K        D   L+ G E KGL P+       S   +
Sbjct: 65  EELQQKYPEGRF--FYTSTKATKRYCDIAFQDGDFLVFGKETKGLPPELLAANPDSCIRM 122

Query: 255 HMPGIIKALNVSNAAAVALYIT 276
            M   +++LN+SN+AA+ +Y  
Sbjct: 123 PMTDKVRSLNLSNSAAIIVYEA 144


>gi|51244088|ref|YP_063972.1| hypothetical protein DP0236 [Desulfotalea psychrophila LSv54]
 gi|50875125|emb|CAG34965.1| hypothetical protein DP0236 [Desulfotalea psychrophila LSv54]
          Length = 160

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 12/144 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L++VN+  NIG + RSA       I T       +    +   + A   IP        
Sbjct: 23  ILNNVNEL-NIGTLWRSAYILGASFIFTI----DKKYKTQSSDITSAWTKIPLYHYKTFA 77

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-IAL-ILGAEGKGLRPKTQETATSMAHL 254
           +    +     + +G+    +  +     +   +A+ +LG E +GL  K  +   S+  L
Sbjct: 78  EFKDNLPFAT-KIVGVEM-GESSIAIGDFSHPDMAVYLLGNEQRGLSKKITDQCHSLIQL 135

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
              G   +LNV+ A ++ +Y   N
Sbjct: 136 P--GEF-SLNVAVAGSIVMYDRLN 156


>gi|86147915|ref|ZP_01066220.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222]
 gi|218710836|ref|YP_002418457.1| tRNA/rRNA methyltransferase [Vibrio splendidus LGP32]
 gi|85834342|gb|EAQ52495.1| rRNA methylase, SpoU family protein [Vibrio sp. MED222]
 gi|218323855|emb|CAV20216.1| Hypothetical tRNA/rRNA methyltransferase [Vibrio splendidus LGP32]
          Length = 159

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R       +  +        E   + ++     +     R  NL   L+ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKNLEAFLEYLENE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGII 260
               F+    ++ +              L+ G E +GL  +  E+        + M    
Sbjct: 74  REGDFRIFACTTKTTGHHVDAKFQQGDVLMFGPETRGLPAEFIESMPMEQRIRIPMMPDA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|258625649|ref|ZP_05720528.1| rRNA methyltransferase [Vibrio mimicus VM603]
 gi|258581887|gb|EEW06757.1| rRNA methyltransferase [Vibrio mimicus VM603]
          Length = 158

 Score = 75.8 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFVEYLQRE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
            G F+    ++ + +            L+ G E +GL  +   +  A     + M    +
Sbjct: 74  RGTFRLFACTTKTTQHHVDAKFKQGDVLMFGPETRGLPAELIASLPAEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|241954588|ref|XP_002420015.1| tRNA guanosine-2'-O-methyltransferase, putative; trna
            guanosine-2'-o-methyltransferase trm3 (ec 2.1.1.34) (trna
            [gm18 methyltransferase) (trna methylase 3) [Candida
            dubliniensis CD36]
 gi|223643356|emb|CAX42231.1| tRNA guanosine-2'-O-methyltransferase, putative [Candida dubliniensis
            CD36]
          Length = 1411

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 5/156 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             +  S+L++V   V+ P N+G I R        G++T               A  A + +
Sbjct: 1255 EIPRSELIVVSSLVDKPPNLGGICRLCDVLGA-GLLTLHDIEVKNHINFKTVAVTADQWM 1313

Query: 188  PYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIK-NDKIALILGAEGKGLRPK 243
            P I +   N+ + L      G+  IGL  +D    L  ++K   K  +++G E +G+   
Sbjct: 1314 PMIEVKMENIKNYLLDKKREGYTLIGLEQTDKSIELNNDLKFPKKSLILIGKEREGIPGD 1373

Query: 244  TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                      +   GI++++N+  A A+ ++   + 
Sbjct: 1374 LLAELDFCVEIKQVGIVRSMNIQTATAIIVHAYSSQ 1409


>gi|78356571|ref|YP_388020.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218976|gb|ABB38325.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 152

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 1/141 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R   A      +        +   + ++      H+        
Sbjct: 3   IVLFQPEIPPNTGNVARLCAATRTSLHLIEPLGFSVDDKHVRRAGLDYWPHVDLTVWPGW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++++ S   + +  S+     ++    N   AL+ G E +GL     + +  +  + 
Sbjct: 63  YAFMREVGSR-VRLVMTSARGGTAVQDFRFNKNDALVFGPESRGLPAHMLDGSGHVVRIP 121

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           + G +++LN+S AA + LY  
Sbjct: 122 IWGEVRSLNMSTAAGIVLYQA 142


>gi|161870795|ref|YP_001599968.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
 gi|161596348|gb|ABX74008.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
          Length = 157

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 5   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVYE 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++        L+ G E +GL     ++  A   
Sbjct: 65  NFDDCLKAL--AGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQK 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  AV L+     
Sbjct: 123 IRLPMQPGSRSMNLSNTVAVILFEAWRQ 150


>gi|121634138|ref|YP_974383.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18]
 gi|218768949|ref|YP_002343461.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491]
 gi|304389096|ref|ZP_07371140.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|120865844|emb|CAM09576.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis FAM18]
 gi|121052957|emb|CAM09311.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis Z2491]
 gi|254674132|emb|CBA09916.1| hypothetical tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha275]
 gi|261391799|emb|CAX49254.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013]
 gi|304336969|gb|EFM03159.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|319411247|emb|CBY91654.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE
           2594]
 gi|325131588|gb|EGC54295.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M6190]
 gi|325139157|gb|EGC61703.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           ES14902]
 gi|325143107|gb|EGC65454.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           961-5945]
 gi|325197552|gb|ADY93008.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           G2136]
 gi|325203383|gb|ADY98836.1| RNA methyltransferase, TrmH family, group 2 [Neisseria meningitidis
           M01-240355]
          Length = 154

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 2   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVYE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++        L+ G E +GL     ++  A   
Sbjct: 62  NFDDCLKAL--AGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  AV L+     
Sbjct: 120 IRLPMQPGSRSMNLSNTVAVILFEAWRQ 147


>gi|168333560|ref|ZP_02691825.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 162

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     PHN GAI R+  A      +        +   + ++     + +   R  N 
Sbjct: 3   IVLLEPEIPHNTGAIARTCAATGAALHLIEPLGFKLDEKHVRRAGLDYWDKLNIKRYCNF 62

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM--- 251
            +    +    F +    ++ +K+     +      ++ G E  G+  +           
Sbjct: 63  AEF---LVQNDFPKIYMATTKAKQKYSDVLYEADAWIMFGKESGGIPEEILR--DHKETA 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN++N+ AV LY     
Sbjct: 118 IRVPMLKDIRSLNLANSVAVILYEALRQ 145


>gi|153008950|ref|YP_001370165.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum anthropi ATCC 49188]
 gi|151560838|gb|ABS14336.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum anthropi ATCC
           49188]
          Length = 180

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR A        +            L ++    LE     R 
Sbjct: 23  ELRVALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRSLKRAGMDYLEQATLTRH 82

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           ++             + + LS+ +  P       +   L+ G E  G+      +A +  
Sbjct: 83  ADWHHFEDWRLQAKRRIVLLSTKAAIPYTDYRFQENDILLFGRESSGVPDNVHNSADARL 142

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 143 LIPMMPGARSLNLAVSVA 160


>gi|320353876|ref|YP_004195215.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
           2032]
 gi|320122378|gb|ADW17924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
           2032]
          Length = 157

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + +S L +VL     P N G+I R   A      +        +   L ++      H+ 
Sbjct: 4   MDSSALHIVLVEPEIPPNTGSIARLCGATDTVLDLVHPLGFQIDDKHLKRAGLDYWPHVR 63

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQE 246
                +L   LQ+          L++ +K+   +      D+  LI G E KGL  +   
Sbjct: 64  INHWDSLDAFLQQADERHLHF--LTTKTKRSYTEARFCPGDR--LIFGKETKGLPEEILT 119

Query: 247 T-ATSMAHLHMPG-IIKALNVSNAAAVALYITQNHFAK 282
             +     + M    I++LN++ AA + LY       +
Sbjct: 120 LYSDRCLTIPMTNPHIRSLNLAMAAGIVLYEALRQIRR 157


>gi|261254104|ref|ZP_05946677.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260937495|gb|EEX93484.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 158

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYQAFVEYLEKE 73

Query: 206 --GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
             G++    ++ +              L+ G E +GL  +  E+        + M    +
Sbjct: 74  REGYRIFACTTKTTGHHVDANFQKGDVLLFGPETRGLPAELIESMPMEQRIRIPMMPDAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|168701120|ref|ZP_02733397.1| putative rRNA methylase [Gemmata obscuriglobus UQM 2246]
          Length = 172

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 21/166 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N G I R   A +    +  K     +   L ++       +  +R    
Sbjct: 4   VALWEPEIPPNTGNIARLCAATNTRLHLIGKLGFRLDDRALKRAGLDYWHAVDVVRHVTF 63

Query: 196 TDALQKMHSWG-------------------FQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
            D  + +                        +   + + +++P  +    D   L+ G+E
Sbjct: 64  ADFERALTGEVKRDSPSGTTTDADRIEHPLPRVWCVETPAERPYTRAEFADGDCLLFGSE 123

Query: 237 GKGLRPKTQET-ATSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
             GL P  +E  A  +  + MPG  +++LN++ A  + LY      
Sbjct: 124 SSGLPPSVRERYADRLVGIPMPGGAVRSLNLATAVGIVLYDALRRL 169


>gi|262166702|ref|ZP_06034439.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223]
 gi|262170375|ref|ZP_06038053.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451]
 gi|261891451|gb|EEY37437.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus MB-451]
 gi|262026418|gb|EEY45086.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio mimicus VM223]
          Length = 158

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFVEYLQRE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
            G F+    ++ + +            L+ G E +GL  +   +  A     + M    +
Sbjct: 74  RGTFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAELIASLPAEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|227825173|ref|ZP_03990005.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226905672|gb|EEH91590.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 155

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   L ++       +      ++
Sbjct: 3   IVLVEPEIPGNTGNIARLCAATGASLHLVRPLGFSVDDRYLKRAGLDYWHLVDIHYYDSV 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + L            L++ + +   +        LI G E  GL    +         +
Sbjct: 63  EEVLAAYPDA--PRFLLTTHAHRSYTRVEYTKDSLLIFGKESAGLPEAFRMAHEDECIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN++N+ ++ LY     
Sbjct: 121 PMVPEARSLNLANSVSIVLYEALRQ 145


>gi|317495249|ref|ZP_07953619.1| RNA methyltransferase [Gemella moribillum M424]
 gi|316914671|gb|EFV36147.1| RNA methyltransferase [Gemella moribillum M424]
          Length = 157

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 7/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   + ++     EH+  I   + 
Sbjct: 4   IVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLIVWDSF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGKGLRPKTQET-ATS 250
            + L+      +  I  +   +K       ++K    I  I G E KGL  + +E  +  
Sbjct: 64  DEFLEATSDKNYYLI--TKFGQKIYSDFDFSNKNDEEIYFIFGRETKGLPKEFREKYSEQ 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   +++LN+SN AA+ +Y     
Sbjct: 122 ALRIPMSENVRSLNLSNTAALIIYEALRQ 150


>gi|307128915|ref|YP_003880931.1| putative rRNA methylase [Dickeya dadantii 3937]
 gi|306526444|gb|ADM96374.1| predicted rRNA methylase [Dickeya dadantii 3937]
          Length = 154

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R A    C   +        E   L ++     +     R  N  D LQ +   
Sbjct: 14  NTGNIIRLAANNGCSLHLIEPLGFDFEEKKLRRAGLDYHDLASVSRHRNYQDFLQAV--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE----TATSMAHLHMPGIIK 261
           G +    ++   +P ++        L+ G+E  GL    +            + M    +
Sbjct: 72  GRRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPDDIRNGFAPEC--RIRIPMEPNCR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN+ A+  Y     
Sbjct: 130 SLNLSNSVAIISYEAWRQ 147


>gi|196019818|ref|XP_002119047.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
 gi|190577173|gb|EDV18467.1| hypothetical protein TRIADDRAFT_63015 [Trichoplax adhaerens]
          Length = 289

 Score = 75.8 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 5/167 (2%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
            E A       +    + + +VL +   P N G I+R+      + I+            
Sbjct: 118 AEIADHSPEKTEKSTAAPMKIVLYNPQIPQNTGNIIRTCSVTGAELILVKPLGFELSDRK 177

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           L ++     + +    + +L + L++   + F     SS + +       +    LI G+
Sbjct: 178 LKRAGLDYWDEVKISVVDSLEEILEENDDFCFF----SSKATQWHTDRTYSKNSILIFGS 233

Query: 236 EGKGLR-PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           E  GL     ++    +  + M    + LN+SNA ++ +Y       
Sbjct: 234 ETSGLPIEVMRKYQEKLIKIPMLAKQRCLNLSNAVSIGIYEAWRQVG 280


>gi|154484057|ref|ZP_02026505.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
           27560]
 gi|149735099|gb|EDM50985.1| hypothetical protein EUBVEN_01766 [Eubacterium ventriosum ATCC
           27560]
          Length = 164

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I R+  A      +            L ++     + +      + 
Sbjct: 3   VILLEPEIPQNTGNIGRTCCATGTKLHLIEPMGFRINEKNLKRAGMDYWDDLDVTIYDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D +      G +    ++ +              ++ G E  G+  +   +   +   +
Sbjct: 63  KDFMD--QHPGIKIWMATTKAPHRYTDVEFGPDDYIMFGKESAGIPEEILVDNEDTCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN++N+ A+ LY     
Sbjct: 121 PMNPEIRSLNLANSVAIVLYEALRQ 145


>gi|254225421|ref|ZP_04919032.1| rRNA methylase, SpoU family [Vibrio cholerae V51]
 gi|125622055|gb|EAZ50378.1| rRNA methylase, SpoU family [Vibrio cholerae V51]
          Length = 158

 Score = 75.5 bits (185), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYVAFIEYLQRE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
            G F+    ++ + +            L+ G E +GL  +   +  A     + M    +
Sbjct: 74  RGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPAEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|323456726|gb|EGB12592.1| hypothetical protein AURANDRAFT_6321 [Aureococcus anophagefferens]
          Length = 173

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 11/149 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITT--KRYSPSESAVLAKS-ASGALEHIPYIRI 192
           +V  ++    N+G+++R+A AF    ++    +R S      L    A GA   +P    
Sbjct: 2   LVAHNIKSADNLGSLVRTAGAFGAREVLVVSAERTSKRLRKNLRTFGAHGAERRVPLRAF 61

Query: 193 SNLTDALQKMHS-------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
             L   +  + +       +G +   ++     P            + G EG+GL P   
Sbjct: 62  GTLELLVSWVKAPPRNCEIFGIEIDDVAVSCAAPDAFGAPALPACFMPGNEGEGLLPNQI 121

Query: 246 ETATSMAHLHMPGIIK-ALNVSNAAAVAL 273
                + ++        +LNV+ A AV L
Sbjct: 122 ALCDRLVYVPQFAPATASLNVNAATAVVL 150


>gi|153834908|ref|ZP_01987575.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01]
 gi|148868634|gb|EDL67718.1| RNA methyltransferase, TrmH family, group 2 [Vibrio harveyi HY01]
          Length = 159

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R       +  +        E   + ++     +     R  +    L+ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYQAFLEYLEKE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
               ++    ++ +          +   L+ G E +GL  +  E+        + M    
Sbjct: 74  KQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPAEVIESLPMEQRIRIPMMPDA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|207347023|gb|EDZ73341.1| YDL112Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1436

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 5/152 (3%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            D V  S+L++V   V+ P N+G I R        G++T +             A  A   
Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRLCDVLGV-GLLTVQDIKVKNHPQFKNVAVTADRW 1337

Query: 187  IPYIRI--SNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +P   +    +   ++     G+  IGL  +  S K         K  ++LG E  G+  
Sbjct: 1338 MPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFGIPG 1397

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                       +   G+I+++N+  A AV ++
Sbjct: 1398 TLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429


>gi|330924237|ref|XP_003300564.1| hypothetical protein PTT_11833 [Pyrenophora teres f. teres 0-1]
 gi|311325249|gb|EFQ91337.1| hypothetical protein PTT_11833 [Pyrenophora teres f. teres 0-1]
          Length = 1272

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 71/195 (36%), Gaps = 41/195 (21%)

Query: 123  SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK---- 178
             P++   R + ++M+   +++P N+G + R + +F  + +               K    
Sbjct: 1080 PPSMQNQRPASVMMIASLIDNPTNLGGLSRISESFGLEALYI-----DDLKKTAHKDFKA 1134

Query: 179  SASGALEHIPYIRISNL--TDALQKMHSWGFQTIGLS-------SDSKKPLEQE------ 223
            ++  + +H+    +  +     L    S G++ +G+          ++   +Q+      
Sbjct: 1135 TSVRSEKHLAIRELKEVGVPAFLLGAKSKGYEVVGIEQTDRSGILGNEDSSDQKEIVAGN 1194

Query: 224  -----------------IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
                                 K  L+LG+E +G+  +          +   G+ ++LNV 
Sbjct: 1195 ESTGEQSTHVVRSQDIGTLPKKCCLVLGSEKEGISAEVLAVIDRNVEIKTVGVTRSLNVQ 1254

Query: 267  NAAAVALYITQNHFA 281
             A  +ALY     ++
Sbjct: 1255 TAGGIALYEWWREWS 1269


>gi|254805689|ref|YP_003083910.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha14]
 gi|254669231|emb|CBA08073.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis
           alpha14]
          Length = 154

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 2   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVYE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++        L+ G E +GL     ++  A   
Sbjct: 62  NFDDCLKAL--AGRRIFALTTKGTVRPDETAFQKGDVLLFGPETRGLPADILDSLPAAQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  AV L+     
Sbjct: 120 IRLPMQPGCRSMNLSNTVAVILFEAWRQ 147


>gi|86606598|ref|YP_475361.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
 gi|86555140|gb|ABD00098.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           JA-3-3Ab]
          Length = 269

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 17/161 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R +Q+ +VL     P N+GAI R          +          A     A  A + +  
Sbjct: 11  RLAQVRLVLVRPAGPRNLGAIARVMKNMGLRQWVLVDPQCDPLDAEAVTMAVHATDLLRQ 70

Query: 190 IR-ISNLTDALQKMHSWGFQTIGLSS------------DSKKPLEQEIKNDKIALILGAE 236
            R +  L +ALQ       Q  G +               ++   + +     AL+ G E
Sbjct: 71  ARQVPTLAEALQGC----VQVFGTAGRREPYPPEWQIQSPRQAFPELLAAGPAALVFGPE 126

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +GL  +          +       +LN++ A  +  Y  +
Sbjct: 127 DRGLSNEELALCHRQIQIPTDPAYPSLNLAQAVGICCYELR 167


>gi|225450191|ref|XP_002263230.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 218

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 10/168 (5%)

Query: 124 PTLDAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
             +  + N++LL +VL     P N G I R+  A +    +        + A L ++   
Sbjct: 26  ERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLD 85

Query: 183 ALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
              ++      +  +  +         + +  +                 LI G+E  GL
Sbjct: 86  YWPYVVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGL 145

Query: 241 RPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            P+      S         + M    ++ LN+S +  +ALY       
Sbjct: 146 PPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLN 193


>gi|297736221|emb|CBI24859.3| unnamed protein product [Vitis vinifera]
          Length = 250

 Score = 75.5 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 10/168 (5%)

Query: 124 PTLDAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
             +  + N++LL +VL     P N G I R+  A +    +        + A L ++   
Sbjct: 58  ERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLD 117

Query: 183 ALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
              ++      +  +  +         + +  +                 LI G+E  GL
Sbjct: 118 YWPYVVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGL 177

Query: 241 RPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
            P+      S         + M    ++ LN+S +  +ALY       
Sbjct: 178 PPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLN 225


>gi|149237384|ref|XP_001524569.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452104|gb|EDK46360.1| hypothetical protein LELG_04541 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 934

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 5/156 (3%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +  S L++V   V+ P N+G I R +      G++T      ++       A  A + +
Sbjct: 778 DLSRSDLIVVASLVDKPPNLGGICRLSDVLGV-GLLTIHDMEVAKHPQFKNVAVTADQWM 836

Query: 188 PYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDKIALILGAEGKGLRPK 243
           P   +    + + L +    G+  IGL  +D    L + +    K  ++LG E +G+  +
Sbjct: 837 PMHEVKPEEIKNYLLEKKRDGYTLIGLEQTDKSVQLNKNLEFPKKSLILLGKEKEGIPGE 896

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                     +   GII+++N+  AAA+ ++   + 
Sbjct: 897 LLAELDFCVEIKQVGIIRSMNIQTAAAIIVHAYSSQ 932


>gi|296130802|ref|YP_003638052.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296022617|gb|ADG75853.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 219

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 12/147 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD  R+   + + + V+D  NIG+++R+A AF+  G+    R          + A   
Sbjct: 59  ADLDTRRHPFHVAIENWVHDL-NIGSVVRTANAFNSAGVHVVGRR-----RWNRRGAMVT 112

Query: 184 LEHIPYIRISNLTDALQKMHSWG-----FQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237
             ++      +           G        +G+       P+E         L+LG E 
Sbjct: 113 DRYLHVHHHPDAAALATWAAGAGPDAGRLPVVGVDNVPGSVPVETFAFPRACVLLLGQES 172

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALN 264
            GL    Q     + H+   G  ++LN
Sbjct: 173 TGLTEAAQAMCDVVVHITQHGSTRSLN 199


>gi|190405115|gb|EDV08382.1| hypothetical protein SCRG_00607 [Saccharomyces cerevisiae RM11-1a]
 gi|259145133|emb|CAY78397.1| Trm3p [Saccharomyces cerevisiae EC1118]
          Length = 1436

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            D V  S+L++V   V+ P N+G I R        G++T +             A  A   
Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRLCDVLGV-GLLTVQDIKVKNHPQFKNVAVTADRW 1337

Query: 187  IPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDKIALILGAEGKGLRP 242
            +P   +    +   ++     G+  IGL  +D    L+       K  ++LG E  G+  
Sbjct: 1338 MPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGIPG 1397

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                       +   G+I+++N+  A AV ++
Sbjct: 1398 TLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429


>gi|151941891|gb|EDN60247.1| Gm18 tRNA methyltransferase [Saccharomyces cerevisiae YJM789]
          Length = 1436

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            D V  S+L++V   V+ P N+G I R        G++T +             A  A   
Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLGGICRLCDVLGV-GLLTVQDIKVKNHPQFKNVAVTADRW 1337

Query: 187  IPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDKIALILGAEGKGLRP 242
            +P   +    +   ++     G+  IGL  +D    L+       K  ++LG E  G+  
Sbjct: 1338 MPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGIPG 1397

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                       +   G+I+++N+  A AV ++
Sbjct: 1398 TLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429


>gi|251791594|ref|YP_003006315.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
 gi|247540215|gb|ACT08836.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya zeae Ech1591]
          Length = 154

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R A    C   +        E   L ++     +     R  N  D LQ +   
Sbjct: 14  NTGNIIRLAANNGCSLHLIEPLGFDFEEKKLRRAGLDYHDLANVSRHRNYQDFLQAV--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
           G +    ++   +P ++        L+ G+E  GL    +      +   + M    ++L
Sbjct: 72  GQRIFACTTKGSRPYDEPDYQPGDVLLFGSETAGLPEAIRNGFAPENRIRIPMEPDCRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SN+ A+  Y     
Sbjct: 132 NLSNSVAIISYEAWRQ 147


>gi|326503224|dbj|BAJ99237.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 252

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 13/177 (7%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVA--FSCDGIITTKRYSPSES 173
               P+ S    A     L +VL     P N G+I R+  A       +     +     
Sbjct: 53  AAAGPVGSGVEVARAKRMLHVVLVSPMIPGNTGSIARTCAASAVGLHLVGPLGFHVD--D 110

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIAL 231
             L ++      ++      +  +          Q   +  +                 L
Sbjct: 111 TKLKRAGLDYWPYVVVKIHDSWGEFRDYFMKQDGQKRLLAFTKRGTHVHSDFSYKPGDWL 170

Query: 232 ILGAEGKGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           + G+E KGL     E  +          + M    ++ LN+S +  +ALY       
Sbjct: 171 VFGSETKGLPESALEDCSGEAVGGGTIRIPMVETYVRCLNLSVSVGIALYEAARQLN 227


>gi|291042902|ref|ZP_06568643.1| spoU protein [Neisseria gonorrhoeae DGI2]
 gi|293398088|ref|ZP_06642293.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae
           F62]
 gi|291013336|gb|EFE05302.1| spoU protein [Neisseria gonorrhoeae DGI2]
 gi|291611351|gb|EFF40421.1| RNA methyltransferase, TrmH family, group 2 [Neisseria gonorrhoeae
           F62]
          Length = 157

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 5   LTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVHE 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++        L+ G E +GL     ++  A   
Sbjct: 65  NFDDCLKSL--AGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQK 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  +V L+     
Sbjct: 123 IRLPMRPGSRSMNLSNTVSVILFEAWRQ 150


>gi|149181311|ref|ZP_01859809.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
 gi|148851036|gb|EDL65188.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
          Length = 160

 Score = 75.1 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++  +L ++     + +      ++
Sbjct: 5   VVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLRRAGLDYWQFVEINYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETA-TSM 251
            +  +   + G +   L+   +        ++K      I G E  GL  +  E      
Sbjct: 65  EEFFE--KNEGGEFYYLTKYGENVHSGYDYSNKEKDYYFIFGRETTGLPDEVIENNKDRC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SN AA+ +Y     
Sbjct: 123 LRIPMNNNARSLNLSNTAAILVYEALRQ 150


>gi|59802048|ref|YP_208760.1| hypothetical protein NGO1727 [Neisseria gonorrhoeae FA 1090]
 gi|194099620|ref|YP_002002751.1| SpoU [Neisseria gonorrhoeae NCCP11945]
 gi|239999819|ref|ZP_04719743.1| SpoU [Neisseria gonorrhoeae 35/02]
 gi|240014975|ref|ZP_04721888.1| SpoU [Neisseria gonorrhoeae DGI18]
 gi|240017423|ref|ZP_04723963.1| SpoU [Neisseria gonorrhoeae FA6140]
 gi|240081565|ref|ZP_04726108.1| SpoU [Neisseria gonorrhoeae FA19]
 gi|240113844|ref|ZP_04728334.1| SpoU [Neisseria gonorrhoeae MS11]
 gi|240116578|ref|ZP_04730640.1| SpoU [Neisseria gonorrhoeae PID18]
 gi|240122044|ref|ZP_04735006.1| SpoU [Neisseria gonorrhoeae PID24-1]
 gi|240124341|ref|ZP_04737297.1| SpoU [Neisseria gonorrhoeae PID332]
 gi|240126553|ref|ZP_04739439.1| SpoU [Neisseria gonorrhoeae SK-92-679]
 gi|240129015|ref|ZP_04741676.1| SpoU [Neisseria gonorrhoeae SK-93-1035]
 gi|254494601|ref|ZP_05107772.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|260439661|ref|ZP_05793477.1| SpoU [Neisseria gonorrhoeae DGI2]
 gi|268595629|ref|ZP_06129796.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268597661|ref|ZP_06131828.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268599912|ref|ZP_06134079.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268602247|ref|ZP_06136414.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268682968|ref|ZP_06149830.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268685133|ref|ZP_06151995.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268687395|ref|ZP_06154257.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|59718943|gb|AAW90348.1| putative tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA
           1090]
 gi|193934910|gb|ACF30734.1| SpoU [Neisseria gonorrhoeae NCCP11945]
 gi|226513641|gb|EEH62986.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268549018|gb|EEZ44436.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268551449|gb|EEZ46468.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268584043|gb|EEZ48719.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268586378|gb|EEZ51054.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268623252|gb|EEZ55652.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268625417|gb|EEZ57817.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268627679|gb|EEZ60079.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|317165109|gb|ADV08650.1| hypothetical protein NGTW08_1693 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 154

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 2   LTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +   G +   L++      ++        L+ G E +GL     ++  A   
Sbjct: 62  NFDDCLKSL--AGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  +V L+     
Sbjct: 120 IRLPMRPGSRSMNLSNTVSVILFEAWRQ 147


>gi|49475913|ref|YP_033954.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238721|emb|CAF27975.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 158

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR +  F     I            L ++    LE+    R  +    +  M  
Sbjct: 14  GNTGTILRLSACFGLHVHIIEPAGFNLSDRNLKRAGMDYLEYASLERHIDWPHFIHTMKQ 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           +  + + LS+ ++    Q    +   L+ G E  G+     E       + M    ++LN
Sbjct: 74  FNRRLLLLSTKAETCYTQICYQENDVLLFGRESAGVPNYVYEAVNETLKIPMQPYARSLN 133

Query: 265 VSNAAAV 271
           ++ + A+
Sbjct: 134 LAMSVAI 140


>gi|313200342|ref|YP_004039000.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312439658|gb|ADQ83764.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp.
           MP688]
          Length = 164

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E   L ++     E+       N 
Sbjct: 14  IVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENW 73

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
                 +   G +   L++            +    + G E +GL  + ++         
Sbjct: 74  EACCTAL--AGRRMFALTTKGSTRHSTIAFQEGDVFVFGPETRGLPEEIRDQFAPDHRVR 131

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+AAV LY     
Sbjct: 132 LPMMPNNRSLNLSNSAAVLLYEAWRQ 157


>gi|303325560|ref|ZP_07356003.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
 gi|302863476|gb|EFL86407.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
          Length = 159

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 11/149 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R   A   +  +        E+  L ++    L++ P +R+   
Sbjct: 3   IVLFEPEIPPNTGNVARLCAATGTELHLIEPLGFKLENRYLKRA---GLDYWPNVRLFTW 59

Query: 196 TDALQKMHSWG-------FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            D        G         T   S     P++      + +LI G E +GL P+  + +
Sbjct: 60  PDWRAFAQRPGRPATERWVMTSAKSRHGSAPVQHFAFQPEDSLIFGPETRGLPPEMLDAS 119

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYIT 276
                + M  G +++LN+S +A + LY+ 
Sbjct: 120 PHHVRIPMREGGVRSLNLSTSAGIVLYMA 148


>gi|114569286|ref|YP_755966.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114339748|gb|ABI65028.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 148

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA +R A  F  +  I      P     + ++A      I  +R ++         
Sbjct: 11  PQNLGAAMRVAACFGAELDIIEPCAFPLTDKGIRRAAMDYQAAISPLRHASWKAYQASAE 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           +   + +  ++     L       +D+  L+ G E  G+     + AT    + +   ++
Sbjct: 71  ASAGRLVLFTTRGAGKLWDFSFRPDDR--LLFGRESAGVPDDVHDAATCRVKIPIREGMR 128

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LNV+ +A +AL        
Sbjct: 129 SLNVTVSAGIALAEASRQLG 148


>gi|323495118|ref|ZP_08100204.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546]
 gi|323310619|gb|EGA63797.1| RNA methyltransferase [Vibrio brasiliensis LMG 20546]
          Length = 158

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYQAFVEYLEKE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
            G ++    ++ +              L+ G E +GL  +  E+        + M    +
Sbjct: 74  RGDYRIFACTTKTTGHHVDANFQKGDVLLFGPETRGLPAELIESMPMEQRIRIPMMPDAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|110634520|ref|YP_674728.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium sp. BNC1]
 gi|110285504|gb|ABG63563.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
          Length = 153

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 45/136 (33%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GAILR +        +            L ++    LE     R ++  D     H
Sbjct: 16  PGNTGAILRLSACLGLAVDLIEPAGFDLSDRALKRAGMDYLELAALRRHASWEDFNSWRH 75

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + I  ++    P +     D   L+ G E  G+             + M    ++L
Sbjct: 76  QEARRIILFTTAGTVPYQCFSFRDGDILMFGRESSGVPDHVHNAVNYRLVIPMKEGTRSL 135

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+A       
Sbjct: 136 NVAMAAAMACGEAVRQ 151


>gi|323702820|ref|ZP_08114479.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532208|gb|EGB22088.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           nigrificans DSM 574]
          Length = 152

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++   L ++       +      +L
Sbjct: 3   IVLVEPEIPANTGNIARTCSVTGASLHLVRPLGFSTDDRHLKRAGLDYWHLLDLHYHDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
            +  ++  +  F          KP  +        L+ G E  GL  +           +
Sbjct: 63  QELQEQYPNGRFWYFTT--KGGKPHHRVQYRPDDFLVFGKETAGLPREVLSQNPDYCLRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M   +++LN+SN+ A+ALY       
Sbjct: 121 PMLETVRSLNLSNSVAIALYEALRQLG 147


>gi|198282557|ref|YP_002218878.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666125|ref|YP_002424748.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247078|gb|ACH82671.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518338|gb|ACK78924.1| RNA methyltransferase, TrmH family, group 2 [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 171

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 4/152 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S L ++L     P N G I+R          +        +   L ++     E     
Sbjct: 3   ESFLHVILYEPEIPPNTGNIIRLCANTGATLHLVEPLGFAWDDRRLRRAGLDYHEFAQVH 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
           R ++       +          S+   +           AL+ G E +GL      +  A
Sbjct: 63  RHADWASCRAFLGDA--HVFAFSTKGTQFYHDVAYQPGDALLFGPETRGLPAHLLNSLPA 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  L M    ++LN+SNA AVA++      
Sbjct: 121 RQVLRLPMRSGQRSLNLSNACAVAVFEAWRQM 152


>gi|256061599|ref|ZP_05451740.1| tRNA/rRNA methyltransferase SpoU [Brucella neotomae 5K33]
          Length = 159

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 2/138 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L + L   + P N G ILR          +            L ++    LE     R 
Sbjct: 2   ELRVALYQPDIPGNTGTILRMVACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P       +   L+ G E  G+     + A    
Sbjct: 62  PDWNCFDAWRKNAGRRLVLLSTKAAIPYTGYQFQENDILLFGRESAGVPEAIHDNADERL 121

Query: 253 HLHMPGIIKALN--VSNA 268
            + M    ++LN  VS A
Sbjct: 122 LIPMVRSARSLNLAVSVA 139


>gi|46203294|ref|ZP_00208891.1| COG0566: rRNA methylases [Magnetospirillum magnetotacticum MS-1]
          Length = 132

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 11/124 (8%)

Query: 53  GVHTVSAALNNPSRKIFQLLAT---KNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
           G+  V A   +   +I +L      K A   +       H  P +  P + + KI+G   
Sbjct: 3   GLPAVKALFAHDPARIERLFYDERMKEAANEMCKAMAAAHK-PYRMAPTEELTKILGS-P 60

Query: 110 VHQGLALETAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +H G+   T P      D        +  + L+VLD V +PHN+GAI R+   F  + ++
Sbjct: 61  LHGGILAVTRPKPIRVFDPADAHLWAKEGKPLLVLDGVGNPHNLGAIARTMAFFGLERLL 120

Query: 164 TTKR 167
            +  
Sbjct: 121 ISDH 124


>gi|301631473|ref|XP_002944820.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase yibK-like
           [Xenopus (Silurana) tropicalis]
          Length = 158

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R A    C   +        E  +L ++     E     R ++ 
Sbjct: 4   IVLVEPEIPPNTGNIIRLAANTGCALHLIEPLGFSMEDRLLRRAGLDYHESARVQRHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              ++       + + +++   +P+          L+ GAE +GL P  +ET   +    
Sbjct: 64  PSFMRTARPDPARMLAMTTHGAQPVHATAFRPGDWLVFGAETRGLTPALRETFAPSQRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SNA AV ++    QN FA
Sbjct: 124 LPMVPGQRSLNLSNAVAVTVFEAWRQNGFA 153


>gi|78044914|ref|YP_359968.1| RNA methyltransferase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997029|gb|ABB15928.1| RNA methyltransferase, TrmH family, group 2 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 153

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R+  A      +       +E   L ++     + +  I   N 
Sbjct: 4   IVLVEPEIPYNTGNIARTCAATGSTLHLVKPLGFSTEDKYLKRAGLDYWDKVRVIYHENF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
            +  +K     F    LS+  K+   +        L+ G E +GL  +  E        +
Sbjct: 64  QELREKYPEGRF--FYLSTKGKRYYHEVSYKPGDFLVFGKETQGLPQELLEANKEFTFRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M   I++LN+SN  A+ +Y      
Sbjct: 122 PMLPQIRSLNLSNTVAIVVYEALRQL 147


>gi|262401978|ref|ZP_06078543.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586]
 gi|262351950|gb|EEZ01081.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC586]
          Length = 158

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFIEYLQRE 73

Query: 206 G--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
              F+    ++ + +            L+ G E +GL  +   +  A     + M    +
Sbjct: 74  RETFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAELIASLPAEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|315499510|ref|YP_004088313.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315417522|gb|ADU14162.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 264

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +P L+    +   ++LD      NIG++ R    F    +                 +SG
Sbjct: 7   APPLERPDLTLPCVILDRPQMAENIGSVARVMANFGLRDLRIVDPRDGWPQERAWAMSSG 66

Query: 183 ALEHIPY---IRISNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIK 225
           A  H P         + +A+  +++        ++               +        +
Sbjct: 67  A--HWPLDNATIYETVAEAIADLNA----VYATTARPRETQLPVRTPRQCADDSYANAQQ 120

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             K  L+ GAE  GL         S+  + +     +LN+S A  + LY  +
Sbjct: 121 GLKTGLLFGAERAGLETSDIALCHSIVTIPVDPAFHSLNLSQAVNIVLYEWR 172


>gi|148977226|ref|ZP_01813853.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3]
 gi|145963508|gb|EDK28771.1| rRNA methylase, SpoU family protein [Vibrionales bacterium SWAT-3]
          Length = 159

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R       +  +        E   + ++     +     R  NL   ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKNLEAFIEYLENE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGII 260
               ++    ++ +              L+ G E +GL  +  E+        + M    
Sbjct: 74  REGDYRIFACTTKTTGHHVDAKFQQGDVLMFGPETRGLPAEFIESMPMEQRIRIPMMPDA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|294139011|ref|YP_003554989.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293325480|dbj|BAJ00211.1| RNA methyltransferase, TrmH family, group 2 [Shewanella violacea
           DSS12]
          Length = 154

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +     R  +    L+ M   
Sbjct: 14  NTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTCVTRYKDFPSFLEAMDGK 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
             + +  ++   +P  +        L+ G E +GL  +  E+   +    + M G+ ++L
Sbjct: 74  --RIMACTTKGSRPHSELSFKKDDVLLFGPETRGLPMEIIESLPTSQRLKIPMAGMSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQIG 149


>gi|154488135|ref|ZP_02029252.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis
           L2-32]
 gi|154083608|gb|EDN82653.1| hypothetical protein BIFADO_01706 [Bifidobacterium adolescentis
           L2-32]
          Length = 304

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 72/211 (34%), Gaps = 51/211 (24%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LD+       + +++     NIG+++R+A AF    +     +  +    L     
Sbjct: 91  IKADLDSRGRHDFEVAVENWTHDFNIGSMVRTANAFQARRVHIVGPHKWNRKGALMTELY 150

Query: 182 GALEHIPYIR-----------------------------------------ISNLTDALQ 200
             +E+ P I                                            N ++ + 
Sbjct: 151 QHVENHPSITELVECWKLRIAGEIAAAQSQAAAIAFHMRGSAAATDGTSGTAPNTSETMA 210

Query: 201 KMHS--------WGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++ +           + I L       P+E     ++  ++ GAEG GL  K  E A  +
Sbjct: 211 QLEALDAKIAELQAARVIALDIIPGAVPMETYHFPERCLMLFGAEGPGLSEKALELADDV 270

Query: 252 AHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
            ++   G ++++N   AAAV+++     H A
Sbjct: 271 VYISQFGSVRSINAGAAAAVSMHAWIAQHAA 301


>gi|294660369|ref|NP_853100.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)]
 gi|284812027|gb|AAP56668.2| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(low)]
 gi|284930576|gb|ADC30515.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. R(high)]
          Length = 163

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 14/156 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL    DP N G I RS V F+    +              ++     +H+   + ++ 
Sbjct: 7   VVLYRPQDPRNAGNIARSCVGFNATLHLIHPFGFFITDERFKRAGLDYWDHLNLKQYADF 66

Query: 196 TDALQKMH-SWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQET- 247
            D +++            +  +   L           + +I L+ G E  GL  +     
Sbjct: 67  DDFIKQNQIDENLFLF--TKKANNYLSNIDFKEYLDHDQRIYLVFGQETNGLPDQLLNKY 124

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVA-LYI--TQNHF 280
             ++  + M   I++ N++N+  +  LY    QN F
Sbjct: 125 QDNLVKIPMHNAIRSFNLANSV-ICALYELSRQNQF 159


>gi|261330743|emb|CBH13728.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 373

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 96/293 (32%), Gaps = 44/293 (15%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +   +   +            + G   +     +   +   +           W      
Sbjct: 63  WNSTKLLRENGNVRRSHGACVVGGASAIRRVWRDYKIRPNVVYVPDTEPTVASWCLEDEL 122

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAVRNSQLL--MVLDHVND 143
           P  +    P  I++ +    +  G A E     +P +   L   + S+L   +VL  +  
Sbjct: 123 PTCIVRCSPVEINRGLLSAELADGHAAEFPIPASPSVETFLGEGKPSRLTSMLVLVGLRI 182

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+AV    + ++              +++ G +    +      +D +  ++
Sbjct: 183 PSNVGTLIRAAVEMGFESVLLIN-CLDPFGEKALRASEGTVFSPQFKIFEPGSDPVSALN 241

Query: 204 SWGF-----QTIGLSSDSKKPLEQEIKN------------------------DKIALILG 234
           S          + L S   +   +  KN                          + LILG
Sbjct: 242 SIAVEHNLLPLLALPSQKAETAFEVAKNLHKINAMRRSQEAEGDAAASHNHIGPL-LILG 300

Query: 235 AEGKGLRPKTQETAT--SMAHLHMPG-IIKALNVSNAAAVALYITQ----NHF 280
           +E KGLR    E +       + +P   +++LNVS A ++ ++  +     HF
Sbjct: 301 SEAKGLRDLAGEWSVPRKFVSVPLPNSTVESLNVSVAGSILIHAFRPAAEKHF 353


>gi|223934212|ref|ZP_03626148.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|253752379|ref|YP_003025520.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|253754205|ref|YP_003027346.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|253756139|ref|YP_003029279.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|302024329|ref|ZP_07249540.1| SpoU rRNA methylase family protein [Streptococcus suis 05HAS68]
 gi|330833319|ref|YP_004402144.1| tRNA/rRNA methyltransferase SpoU [Streptococcus suis ST3]
 gi|223897128|gb|EEF63553.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis 89/1591]
 gi|251816668|emb|CAZ52309.1| SpoU rRNA methylase family protein [Streptococcus suis SC84]
 gi|251818603|emb|CAZ56437.1| SpoU rRNA methylase family protein [Streptococcus suis BM407]
 gi|251820451|emb|CAR47147.1| SpoU rRNA methylase family protein [Streptococcus suis P1/7]
 gi|292558982|gb|ADE31983.1| rRNA methyltransferase, TrmH family [Streptococcus suis GZ1]
 gi|319758784|gb|ADV70726.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis JS14]
 gi|329307542|gb|AEB81958.1| tRNA/rRNA methyltransferase (SpoU) [Streptococcus suis ST3]
          Length = 181

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 7/152 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 17  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDNL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPK-TQETATSMA 252
            + +      G +   +S  + K    E  ND      + G E KGL     +E      
Sbjct: 77  AEFMDYASKQG-RVHLVSKFADKTYSDEDYNDGNIHYFLFGREDKGLPEDFMREHPEKAI 135

Query: 253 HLHMP-GIIKALNVSNAAAVALYI--TQNHFA 281
            + M    +++LNVSN A + +Y    Q  FA
Sbjct: 136 RIPMNDEHVRSLNVSNTACMIVYEALRQQQFA 167


>gi|332531748|ref|ZP_08407633.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038724|gb|EGI75166.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 154

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R ++ 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYALHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHASF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
            D L+K      +    ++   +   +        L+ G E +GL  +  +         
Sbjct: 64  EDYLEKCKPK--KVYACTTKGSQFHHEASYEAGDCLVFGPETRGLPDEMIQALPNDQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA AV +Y +     
Sbjct: 122 IPMQANSRSMNLSNAVAVFVYESWRQLG 149


>gi|254508192|ref|ZP_05120317.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus 16]
 gi|219548914|gb|EED25914.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus 16]
          Length = 158

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYQAFVEYLEKE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
            G ++    ++ +         +    L+ G E +GL  +  E+        + M    +
Sbjct: 74  RGDYRIFACTTKTTGHHVDANFHKGDVLLFGPETRGLPAELIESMPMEQRIRIPMMPDAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|314936092|ref|ZP_07843439.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           subsp. hominis C80]
 gi|313654711|gb|EFS18456.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           subsp. hominis C80]
          Length = 156

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     EH+      N+
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHENI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPKTQET-ATSM 251
               +  +   +    L+   K+       ++       I G E  GL    +E  A + 
Sbjct: 65  ESFFEVTNGKYYL---LTKFGKQTYSDFDFSNTEIENYFIFGRETTGLPDWVKEKYADTT 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSDHIRSLNLSNTAALLIYEALRQ 149


>gi|283769368|ref|ZP_06342267.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia
           extructa W1219]
 gi|283104025|gb|EFC05409.1| putative RNA methyltransferase, TrmH family, group 2 [Bulleidia
           extructa W1219]
          Length = 172

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+  AF     +        +   L ++     E++ Y++  N 
Sbjct: 4   IVLFEPEIPGNTGNIMRTCAAFHMKLHLIEPLGFHLDEKHLKRAGMDYRENVDYVKHINW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQE-TATSMAH 253
               Q+  + G            P      K+ +I L+ G E  G+              
Sbjct: 64  DSFFQEHGNQGLFYYVTRYGKHTPDSFMYPKDQEIYLVFGKESTGIPKPILANHEDFCMR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    ++LN+SN  A+  Y     + 
Sbjct: 124 IPMVEKARSLNLSNCVALCAYEVNRQWG 151


>gi|86132670|ref|ZP_01051263.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
 gi|85816912|gb|EAQ38097.1| SpoU rRNA methylase family protein [Dokdonia donghaensis MED134]
          Length = 150

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P+N G I R A+   C   +        +   L ++     +H+      N 
Sbjct: 4   IVLINPEIPNNTGNIGRLALGSGCRLHLVKPFGFKIDDTRLKRAGLDYWQHLDVQYYDNT 63

Query: 196 TDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAH 253
            D         F  +  LSS   K        + + L+ G E KGL  + T++    +  
Sbjct: 64  EDF---FKKNAFAKMAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKEITEKHPDQLYK 120

Query: 254 LHMPG-IIKALNVSNAAAVALYITQNHFA 281
           + +    I++LN++NA  +  Y       
Sbjct: 121 IPLFSEHIRSLNLANAVGIVAYEGIRQLN 149


>gi|160897116|ref|YP_001562698.1| RNA methyltransferase [Delftia acidovorans SPH-1]
 gi|160362700|gb|ABX34313.1| RNA methyltransferase, TrmH family, group 2 [Delftia acidovorans
           SPH-1]
          Length = 165

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V   +  P N G ++R A    C   +        E  ++ ++     E+ P  R 
Sbjct: 3   HIVLVAPEI--PPNTGNVIRLAANTGCSLHLIEPLGFSMEDRLMRRAGLDYHEYAPVRRH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
           ++    LQ       +   +++ S  P           L+ G+E KGL  + +E      
Sbjct: 61  ADWQAFLQDCQPDRQRMFAMTTHSSSPAHAIGFQPGDWLVFGSESKGLPAEVREQFPPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMLPQQRSLNLSNAVAVTVFEAWRQ 149


>gi|126649466|ref|ZP_01721707.1| CspR [Bacillus sp. B14905]
 gi|126593791|gb|EAZ87714.1| CspR [Bacillus sp. B14905]
          Length = 157

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+    +    +       ++  +L ++       +  +  
Sbjct: 2   PLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWHSVNVVYH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ-ETA 248
            +L D +          I   SD  +P      +DK   I  + G E  GL  +   E  
Sbjct: 62  DSLDDFIAYSKDGDVYLIETYSD--EPFTTHDFSDKERDIYFMFGKETTGLPKEFAYERR 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +     +++LN+SN AA+ +Y     
Sbjct: 120 NMCLRIPQSDHVRSLNLSNTAAIVIYEALRQ 150


>gi|157691625|ref|YP_001486087.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
 gi|194014805|ref|ZP_03053422.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
           7061]
 gi|157680383|gb|ABV61527.1| rRNA methyltransferase-like protein [Bacillus pumilus SAFR-032]
 gi|194013831|gb|EDW23396.1| RNA methyltransferase, TrmH family, group 2 [Bacillus pumilus ATCC
           7061]
          Length = 157

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++  +L ++     ++   +   +L
Sbjct: 5   VVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWKYANVVYHDSL 64

Query: 196 TDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAH 253
            +  +       F             +    ++    + G E  GL     E        
Sbjct: 65  DELFEAHPKGQFFYITKFGQKPHTTFDYSQLDEDYFFVFGRETSGLPKDLIERNMDRCLR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M   +++LN+SN AA+ +Y     
Sbjct: 125 LPMTEHVRSLNLSNTAAILVYEALRQ 150


>gi|121535177|ref|ZP_01666993.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
           carboxydivorans Nor1]
 gi|121306286|gb|EAX47212.1| RNA methyltransferase, TrmH family, group 2 [Thermosinus
           carboxydivorans Nor1]
          Length = 153

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A  C+  +       ++   L ++       +      N 
Sbjct: 4   IVLVEPEIPGNTGNIARLCAATCCELHLVKPLGFSTDDRHLKRAGLDYWHLVKVHYHENF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----ATSM 251
            +   +     F     ++ ++K            L+ G E  GL  +            
Sbjct: 64  QEVADRYAGHNF--YFNTTKAQKRYTDIRYTAGDVLVFGKETAGLPEELLRANWPNC--- 118

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    ++LN+SNA AV  Y       
Sbjct: 119 IRIPMLEDARSLNLSNAVAVVAYEALRQLG 148


>gi|70726108|ref|YP_253022.1| hypothetical protein SH1107 [Staphylococcus haemolyticus JCSC1435]
 gi|68446832|dbj|BAE04416.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 156

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     EH+      ++
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQET-ATSM 251
            D         +    L+   K+       + +      I G E  GL    ++  A + 
Sbjct: 65  EDFFDATQGEYYL---LTKFGKQTYSDFDFSKEDTDYYFIFGRETTGLPDWVKDKYADTA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSENIRSLNLSNTAALLIYEALRQ 149


>gi|30690444|ref|NP_198040.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
           thaliana]
 gi|38603878|gb|AAR24684.1| At5g26880 [Arabidopsis thaliana]
 gi|110740973|dbj|BAE98581.1| hypothetical protein [Arabidopsis thaliana]
 gi|110743259|dbj|BAE99520.1| hypothetical protein [Arabidopsis thaliana]
 gi|332006236|gb|AED93619.1| protein agamous-like 26 [Arabidopsis thaliana]
          Length = 263

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 52/174 (29%), Gaps = 29/174 (16%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVA------------FSCDGIITTKRYSPSESA 174
           +  R+  L +VL     P N G I R+  A            F  D     +        
Sbjct: 75  EDARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPF 134

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           V+ K+ S   E   Y R+      +      G +       S              L+ G
Sbjct: 135 VVVKAHSSWAEFQEYFRLQEGEKRMIAFTKRGTRI-----HSDFSYRSGDY-----LLFG 184

Query: 235 AEGKGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           +E  GL P+                + M    ++ LN+S +  +ALY       
Sbjct: 185 SETSGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLN 238


>gi|330836878|ref|YP_004411519.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748781|gb|AEC02137.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 172

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIR 191
           +L +VL     P N G I R+  A     +   K Y  S      K A     H +    
Sbjct: 2   RLHIVLVEPEIPQNTGNIARTCAATGAV-LHLVKPYGFSLDEKHLKRAGLDYWHLVEIHE 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE----T 247
            ++L D L  + + G      S+ + +        ++  L+ G E KGL          +
Sbjct: 61  YASLQDFL--IATEGRSLYYFSTKAPRSYCDVRFGEESWLVFGKETKGLPEDLLAGHYAS 118

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 + M G  ++LN+SN+ A+A Y     ++
Sbjct: 119 C---LRIPMCGEARSLNLSNSVAIATYEVLRQYS 149


>gi|240118802|ref|ZP_04732864.1| SpoU [Neisseria gonorrhoeae PID1]
 gi|268604513|ref|ZP_06138680.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268588644|gb|EEZ53320.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
          Length = 154

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 2   LTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L+ +     +   L++      ++        L+ G E +GL     ++  A   
Sbjct: 62  NFDDCLKSLADR--RIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSLPAAQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  +V L+     
Sbjct: 120 IRLPMRPGSRSMNLSNTVSVILFEAWRQ 147


>gi|226310665|ref|YP_002770559.1| tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC 100599]
 gi|226093613|dbj|BAH42055.1| putative tRNA/rRNA methyltransferase [Brevibacillus brevis NBRC
           100599]
          Length = 156

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 1/150 (0%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I RS  A      +       ++   L ++       +     
Sbjct: 2   PLHIVLHEPLIPANTGNIARSCAATGAHLHLIHPLGFSTDDRYLKRAGLDYWHAVNVHHH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSM 251
            +    ++           + +  +K        D   +ILG E  GL  +  E      
Sbjct: 62  ESFEHFVEAQGEGAGTFYFVETWGEKLYTDVAFRDGDYIILGKETTGLPEELTEKYREQT 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G  +++N+SN AA+ L+       
Sbjct: 122 IRIPMSGATRSVNLSNCAAIVLFEGLRQLG 151


>gi|242241248|ref|YP_002989429.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
 gi|242133305|gb|ACS87607.1| tRNA/rRNA methyltransferase (SpoU) [Dickeya dadantii Ech703]
          Length = 157

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R A    C   +        E   L ++     +     R  + +  L  +   
Sbjct: 17  NTGNIIRLAANNGCTLHLIEPLGFDFEEKKLRRAGLDYHDLAKVKRHPDYSSFLGAV--A 74

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKAL 263
           G +    ++   +P ++        L+ G+E  GL    +          + M    ++L
Sbjct: 75  GCRIFACTTKGSRPYDEPAYQPGDVLLFGSETAGLPEDIRNGFDPAFRIRIPMEPDCRSL 134

Query: 264 NVSNAAAVALYITQNH 279
           N+SN+ A+  Y     
Sbjct: 135 NLSNSVAIISYEAWRQ 150


>gi|260887246|ref|ZP_05898509.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|330838996|ref|YP_004413576.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
 gi|260863308|gb|EEX77808.1| RNA methyltransferase, TrmH family [Selenomonas sputigena ATCC
           35185]
 gi|329746760|gb|AEC00117.1| tRNA/rRNA methyltransferase (SpoU) [Selenomonas sputigena ATCC
           35185]
          Length = 160

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R       +  +        E   L ++       +      N 
Sbjct: 3   IVLIEPEIPGNTGNIARLCAVSGIELHLVKPLGFSVEDKYLKRAGLDYWHLVKVHYHENF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----ATSM 251
           ++ L+     G Q    S  + +  +     +   L+ G E  G+     E         
Sbjct: 63  SEVLRLF--AGRQFYYCSKKAPRSYDAVSYTEDDFLVFGKETAGIPEALLEEHWEDC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    ++LN+S+AAA+  Y       
Sbjct: 118 IRIPMRLGARSLNLSSAAAIVAYEAMRQIG 147


>gi|84497635|ref|ZP_00996457.1| tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84382523|gb|EAP98405.1| tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 213

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++     NIG+++R+A A          +          + A     + 
Sbjct: 58  DTRRHDFHIAIENWEHDFNIGSVVRTANAMGAAAFHIVGKR-----RWNRRGAMVTDRYQ 112

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                    D      + G + IG+      +PLE         L+ G EG GL    + 
Sbjct: 113 HEHHHPTPGDLATWAAANGIRLIGIDNLPGSRPLETFDLPRNAMLVFGQEGPGLSEAMRA 172

Query: 247 TATSMAHLHMPGIIKALN 264
              +  H+   G  +++N
Sbjct: 173 ECEATLHIEQFGSTRSIN 190


>gi|241123159|ref|XP_002403800.1| hypothetical protein IscW_ISCW002074 [Ixodes scapularis]
 gi|215493536|gb|EEC03177.1| hypothetical protein IscW_ISCW002074 [Ixodes scapularis]
          Length = 316

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           +  ++   L + L++  + G+  +G   +   K L       K  L+LG E +GL  +  
Sbjct: 220 LVVVKPHQLKEYLEEKRNAGYTLVGAEQTAGSKALHDYRFPKKTLLLLGNEKEGLPVELI 279

Query: 246 ETATSMAHLHMPGIIKALNVSNAAA 270
           +       +   G+I++LNV  + A
Sbjct: 280 QLLDVCVEIPQRGVIRSLNVHVSGA 304


>gi|145350311|ref|XP_001419555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579787|gb|ABO97848.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 311

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 44/135 (32%), Gaps = 7/135 (5%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +  N+G + RSA            R    E++   KS       IP    S+  D ++K 
Sbjct: 148 NTQNLGTLWRSAYQLGAAFAFVIGRRFKKEASDTPKS----WTQIPTFEYSDWDDFVRKS 203

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG-IIK 261
                   G+      PLE          ILG+E  GL             L   G    
Sbjct: 204 PVSAVWV-GVEM-GGTPLENFEHPRNAVYILGSEDTGLNTTMLRACQHHIALPTTGTRSP 261

Query: 262 ALNVSNAAAVALYIT 276
           + NV+   A+ +Y  
Sbjct: 262 SFNVAVTGAIIMYDR 276


>gi|323498128|ref|ZP_08103132.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326]
 gi|323316839|gb|EGA69846.1| RNA methyltransferase [Vibrio sinaloensis DSM 21326]
          Length = 158

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYQAFIEYLEKE 73

Query: 206 --GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
              ++    ++ +              L+ G E +GL  +  E+        + M    +
Sbjct: 74  RENYRIFACTTKTTGHHVDANFQQGDVLLFGPETRGLPAELIESMPMEQRIRIPMMPDAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|221233441|ref|YP_002515877.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
 gi|220962613|gb|ACL93969.1| 23S rRNA methyltransferase [Caulobacter crescentus NA1000]
          Length = 154

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS---GALEHIPYIRISNLTDALQ 200
           P N+GA +R    F   G+   +  S   +    K A+   G+L H+   R  +    L+
Sbjct: 11  PQNVGACIRLTACFGL-GLDVIEPCSFPLNDKSLKRAALDYGSLSHL--TRHDSWETFLK 67

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                  + +  ++    P  +        L+ G E +G   +    A     + +    
Sbjct: 68  APERVDGRLLLFTTKGATPFHRFSFEPGDTLLFGNESRGAPEEVHAAAHGRIVIPIRPEA 127

Query: 261 KALNVSNAAAVALYITQNH 279
           +++N++  AA+AL      
Sbjct: 128 RSMNLATTAAMALGEALRQ 146


>gi|119509165|ref|ZP_01628316.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
 gi|119466331|gb|EAW47217.1| RNA methyltransferase TrmH, group 1 [Nodularia spumigena CCY9414]
          Length = 245

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 17/161 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YI 190
           ++L +VL     P N+G+I R    F    ++         +    K A  A E +   +
Sbjct: 4   AELRIVLVEPAGPLNVGSIARVMKNFGLHNLVLVNPQCDPVAEEALKMAVHAKEILESAV 63

Query: 191 RISNLTDALQKMHSWGFQTIGLSS---DSKKPLEQ---------EIKNDKIALILGAEGK 238
            ++ L +ALQ       + I  ++   D + PLE          E  ++  ALI G E +
Sbjct: 64  LVTTLPEALQGC----VRAIATTARVRDWETPLENPRTALPWLLESPSEPAALIFGREDR 119

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           GL  +    A     +       +LN+++A  +  Y    +
Sbjct: 120 GLSNEELNYAQRFVRIPSSENYSSLNLASAVGICCYELAQY 160


>gi|119026478|ref|YP_910323.1| hypothetical protein BAD_1460 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118766062|dbj|BAF40241.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 304

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 71/211 (33%), Gaps = 51/211 (24%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LD+       + +++     NIG+++R+A AF    +     +  +    L     
Sbjct: 91  IKADLDSRGRHDFEVAVENWTHDFNIGSMVRTANAFQARRVHIVGPHKWNRKGALMTELY 150

Query: 182 GALEHIPYIR-----------------------------------------ISNLTDALQ 200
             +E+ P I                                            N ++ + 
Sbjct: 151 QHVENHPSITELVECWKLRIAGEIAAAQSQAAAIAFHMRGSAAATDGTSGTAPNTSETMA 210

Query: 201 KMHS--------WGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
           ++ +           + I L       P+E      +  ++ GAEG GL  K  E A  +
Sbjct: 211 QLEALDAKIAELQAARVIALDIIPGAVPMETYHFPKRCLMLFGAEGPGLSEKALELADDV 270

Query: 252 AHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
            ++   G ++++N   AAAV+++     H A
Sbjct: 271 VYISQFGSVRSINAGAAAAVSMHAWIAQHAA 301


>gi|134300171|ref|YP_001113667.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134052871|gb|ABO50842.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           reducens MI-1]
          Length = 152

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++   L ++       +      + 
Sbjct: 3   IVLVEPEIPANTGNIARTCSVTGASLHLVEPLGFSTDDRYLKRAGLDYWHLLDLHYHKSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
               Q+     F          +P  +    +   L+ G E  GL  +       +   +
Sbjct: 63  AALQQQYPEGRFWYFTT--KGGRPYHEASFEENDFLVFGKETAGLPKELLAANPDNCLRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G +++LN+SN+ A+A+Y     
Sbjct: 121 PMLGQVRSLNLSNSVAIAVYEALRQ 145


>gi|183220250|ref|YP_001838246.1| SpoU family tRNA/rRNA methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910368|ref|YP_001961923.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775044|gb|ABZ93345.1| rRNA methylase [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778672|gb|ABZ96970.1| Putative tRNA/rRNA methyltransferase, TrmH (SpoU) family
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 155

 Score = 74.7 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R  V       I  +         + ++     + +   R  +     ++  
Sbjct: 11  PPNTGNIARLCVNAGVPLSIVGEPAFDLSEKAVRRAGLDYWKDLELHRYPDWDWFQKEKE 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
           + G +   +S   KK       + K   + G E  GL  +  +   +  +  + M    +
Sbjct: 71  TQGKRIFLVSKFGKKVYWDVSFSSKDVFLFGRETSGLPEEIHKGHPSDQIISIPMAESSR 130

Query: 262 ALNVSNAAAVALYITQNH 279
           ++N+SNA A+ LY     
Sbjct: 131 SINLSNAVAIILYEALRQ 148


>gi|116494421|ref|YP_806155.1| rRNA methylase (SpoU class) [Lactobacillus casei ATCC 334]
 gi|116104571|gb|ABJ69713.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei ATCC
           334]
          Length = 169

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 5/143 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++     + +  I   +L D +  + 
Sbjct: 13  PANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWQRVRIIYHDSLDDFMATVK 72

Query: 204 SWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGII 260
              +  +    +  +    +    +     + G E  GL     ++ A     + M   +
Sbjct: 73  EPQYLYLITKFADQTYSDRDYADIDQDHYFLFGKETTGLPEGFMRDHADQCLRIPMTDNV 132

Query: 261 KALNVSNAAAVALYI--TQNHFA 281
           +ALN+SN AA+ +Y    Q HFA
Sbjct: 133 RALNLSNCAALVIYEALRQQHFA 155


>gi|223043587|ref|ZP_03613632.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
           SK14]
 gi|222443075|gb|EEE49175.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus capitis
           SK14]
          Length = 156

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     EH+      ++
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTFTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHESI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPKTQET-ATSM 251
            +         +    L+   K+       ++ +     I G E  GL    +E  A + 
Sbjct: 65  EEFFDSTKGNYYL---LTKFGKQTYSDFDFSNTLENHYFIFGRETTGLPDWIKEKYADTA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSDKIRSLNLSNTAALLIYEALRQ 149


>gi|297581530|ref|ZP_06943453.1| rRNA methylase [Vibrio cholerae RC385]
 gi|297534368|gb|EFH73206.1| rRNA methylase [Vibrio cholerae RC385]
          Length = 158

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFIEYLQRE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
            G F+    ++ + +            L+ G E +GL  +   +        + M    +
Sbjct: 74  RGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPVEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|16124726|ref|NP_419290.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|13421646|gb|AAK22458.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
          Length = 160

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS---GALEHIPYIRISNLTDALQ 200
           P N+GA +R    F   G+   +  S   +    K A+   G+L H+   R  +    L+
Sbjct: 17  PQNVGACIRLTACFGL-GLDVIEPCSFPLNDKSLKRAALDYGSLSHL--TRHDSWETFLK 73

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                  + +  ++    P  +        L+ G E +G   +    A     + +    
Sbjct: 74  APERVDGRLLLFTTKGATPFHRFSFEPGDTLLFGNESRGAPEEVHAAAHGRIVIPIRPEA 133

Query: 261 KALNVSNAAAVALYITQNH 279
           +++N++  AA+AL      
Sbjct: 134 RSMNLATTAAMALGEALRQ 152


>gi|289577474|ref|YP_003476101.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
 gi|289527187|gb|ADD01539.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
           Ab9]
          Length = 156

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 11/155 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V       +        E   + ++       +     
Sbjct: 2   PLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIEEKYVKRAGLDYWPLLDLTVY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----A 248
            NL   L++     F     ++ +K+   +    D   ++ G E  GL     E      
Sbjct: 62  DNLEQFLEENKGKKF--YLATTKAKRYYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDC 119

Query: 249 TSMAHLHMPGIIK--ALNVSNAAAVALYITQNHFA 281
                + M  +I   +LN+SN+ A+ LY       
Sbjct: 120 ---IRIPMHEVISTRSLNLSNSVAIVLYEALRQLG 151


>gi|256833631|ref|YP_003162358.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256687162|gb|ACV10055.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 254

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASG 182
             LD  R+  L + +++ +   NIG+++R+A AF+   + I  KR          + A  
Sbjct: 97  ADLDEHRH-PLHIAIENWHHDFNIGSVVRTANAFAVAEVHIVGKRRWN------RRGAMV 149

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLR 241
              +       +     Q     G   IG+ + D   P+E         L+ G E  GL 
Sbjct: 150 TDRYQHIRHHEDAQAFAQWAQDNGLTVIGIDNIDGSVPIEGFAFPRASVLVFGQESTGLT 209

Query: 242 PKTQETATSMAHLHMPGIIKALN 264
              QE + S+ H+   G  +++N
Sbjct: 210 QPMQEVSQSVVHITQYGSTRSMN 232


>gi|191637805|ref|YP_001986971.1| Putative rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227535616|ref|ZP_03965665.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239631168|ref|ZP_04674199.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065930|ref|YP_003787953.1| putative rRNA methylase (SpoU class) [Lactobacillus casei str.
           Zhang]
 gi|190712107|emb|CAQ66113.1| Putative rRNA methyltransferase [Lactobacillus casei BL23]
 gi|227186746|gb|EEI66813.1| rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239525633|gb|EEQ64634.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438337|gb|ADK18103.1| Predicted rRNA methylase (SpoU class) [Lactobacillus casei str.
           Zhang]
 gi|327381871|gb|AEA53347.1| TrmH family RNA methyltransferase [Lactobacillus casei LC2W]
 gi|327385033|gb|AEA56507.1| TrmH family RNA methyltransferase [Lactobacillus casei BD-II]
          Length = 169

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 5/143 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++     + +  I   +L D +  + 
Sbjct: 13  PANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWQRVRIIYHDSLDDFMATVK 72

Query: 204 S--WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGII 260
                +     +  +    +    +     + G E  GL     ++ A     + M   +
Sbjct: 73  EPQHLYLITKFADQTYSDRDYADIDQDHYFLFGKETTGLPEGFMRDHADQCLRIPMTDNV 132

Query: 261 KALNVSNAAAVALYI--TQNHFA 281
           +ALN+SN AA+ +Y    Q HFA
Sbjct: 133 RALNLSNCAALVIYEALRQQHFA 155


>gi|71662893|ref|XP_818446.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883699|gb|EAN96595.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 559

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 5/169 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWD 84
             H   +      Q  ++ S  + + L G   +             L+  + +     W 
Sbjct: 112 ERHELIQHFVRLRQNPKYRSSKQMMILGGREVLRELFEEGHTPRHLLI--RGSQEVPSWA 169

Query: 85  ANLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
                   +  V     +    G +       +   P     +   +    ++VLD+V+D
Sbjct: 170 KKKGVETEIVRVDRHVAEVCAPGNDGYIGDFDIPPPPAKENLIANKQRFDRILVLDNVDD 229

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
           P  +G +LR+A  F  D IITT   +      + +SA GA     +P  
Sbjct: 230 PGLLGTLLRAAAGFHYDAIITTNHCADIYDHRVVRSARGAHFQKAVPIY 278


>gi|261211259|ref|ZP_05925548.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341]
 gi|260839760|gb|EEX66371.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. RC341]
          Length = 158

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       +  +        E   + ++     +     R  +    +  +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFIDYLQRE 73

Query: 206 G--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
              F+    ++ + +            L+ G E +GL  +   +  A     + M    +
Sbjct: 74  RETFRLFACTTKTTQHHVDAQFQQGDVLMFGPETRGLPAELIASLPAEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|297543786|ref|YP_003676088.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841561|gb|ADH60077.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 156

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 11/155 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V       +        +   + ++       +     
Sbjct: 2   PLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----A 248
            NL   L++     F     ++ +KK   +    D   ++ G E  GL     E      
Sbjct: 62  DNLERFLEQNKGKKF--YLATTKAKKYYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDC 119

Query: 249 TSMAHLHMPGIIK--ALNVSNAAAVALYITQNHFA 281
                + M  +I   +LN+SN+ A+ LY       
Sbjct: 120 ---IRIPMHEVISTRSLNLSNSVAIVLYEALRQLG 151


>gi|297193239|ref|ZP_06910637.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720510|gb|EDY64418.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 219

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T   +   LD  R     + +++     NIG+++R+A AF    I    R          
Sbjct: 54  TREAIVADLDT-RRHGFHVAVENWGHDFNIGSVVRTANAFLAREIHIIGRR-----RWNR 107

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE 236
           + A     +       +     +   +     IG+       PLE+     +  L+ G E
Sbjct: 108 RGAMVTDRYQHVRHHPDTASLTEWAAAEDLPIIGIDNLPGAVPLERTELPRRCVLLFGQE 167

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALN 264
           G GL  + ++ A+ +  +   G  +++N
Sbjct: 168 GPGLTEEARKHASMVCSIAQFGSTRSIN 195


>gi|307267049|ref|ZP_07548563.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917929|gb|EFN48189.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 156

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 11/155 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V       +        +   + ++       +     
Sbjct: 2   PLNVVLVEPEIPQNTGNIARTCVLTGSSLHLVKPLGFSIDEKYVKRAGLDYWPLLNLTVY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----A 248
            NL   L++     F     ++ +KK   +    D   ++ G E  GL     E      
Sbjct: 62  DNLEQFLEQNKGKKF--YLATTKAKKYYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDC 119

Query: 249 TSMAHLHMPGIIK--ALNVSNAAAVALYITQNHFA 281
                + M  +I   +LN+SN+ A+ LY       
Sbjct: 120 ---IRIPMHEVISTRSLNLSNSVAIVLYEALRQLG 151


>gi|256545227|ref|ZP_05472592.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
 gi|256399054|gb|EEU12666.1| TrmH family RNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
          Length = 156

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 12/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G I R+ V       +            L K+     + +  +   ++
Sbjct: 4   IVLISPEHPGNVGNISRTCVLTESRLHLIRPFKFDFSDKSLKKAGIDYWDKLDLVVHDSM 63

Query: 196 TDALQKMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
            + L+ ++      I   SD   +    +         LI G E +G+  K  E     +
Sbjct: 64  EEFLEYINGKNIYLIETGSDKNYADISYKDGDY-----LIFGREKEGIDKKIIEKFKDRV 118

Query: 252 AHLHMPGIIK-ALNVSNAAAVALYI--TQNHF 280
             + M   +  +LN++N+ A+ LY    QN+F
Sbjct: 119 YTIPMTKNMDRSLNLANSVAIVLYEGLRQNNF 150


>gi|260774703|ref|ZP_05883607.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609359|gb|EEX35510.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 158

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS- 204
           N G I+R       +  +        E   + ++     +     R  N    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNYQAFVEYLEKE 73

Query: 205 -WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
              F+    ++ +              L+ G E +GL  +  E+        + M    +
Sbjct: 74  RQTFRIFACTTKTTGHHVDANFQQGDVLLFGPETRGLPAELIESMPMEQRIRIPMMPDAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|254526789|ref|ZP_05138841.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538213|gb|EEE40666.1| RNA methyltransferase TrmH, group 2 [Prochlorococcus marinus str.
           MIT 9202]
          Length = 160

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 11/147 (7%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I RS  AF+    +        E   L ++       +   +  N    L    
Sbjct: 11  PQNTGNIARSCAAFNIPLNLIEPFGFKLEDKYLKRAGLDYWPLVTVNKYENFEKFLASKA 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----- 258
           +   + I  S  +   L+         L+ G E  GL     +    +  + MP      
Sbjct: 71  TK--RIISFSKRNGIYLKDFKFKQDDILLFGREDLGLPDYIIDKTDFLISIFMPNLQTGN 128

Query: 259 ----IIKALNVSNAAAVALYITQNHFA 281
                +++LN+S A  +A+Y       
Sbjct: 129 NAQKGVRSLNLSVACGIAIYEAHKQIN 155


>gi|54025941|ref|YP_120183.1| hypothetical protein nfa39710 [Nocardia farcinica IFM 10152]
 gi|54017449|dbj|BAD58819.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 155

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 7/132 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G + RSA+ +    + T       +++   +    A   IP     ++ D +  +  +
Sbjct: 18  NVGTLWRSAMTYQASMLATIGSRYKPQASDTCR----AHNAIPLHHYRDIDDLIAHLP-Y 72

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   +G+  D++     E  +   AL +LGAE  GL     +    +  +  P    +LN
Sbjct: 73  GCPLVGVELDARAVSLNEFTHPVRALYLLGAEDHGLPAAVLDRCHHVVQIPSPSPW-SLN 131

Query: 265 VSNAAAVALYIT 276
           VS A ++ ++  
Sbjct: 132 VSVAGSLVMHDR 143


>gi|313673216|ref|YP_004051327.1| tRNA/rRNA methyltransferase (spou) [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939972|gb|ADR19164.1| tRNA/rRNA methyltransferase (SpoU) [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 156

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 3/141 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R       + I+  K         L ++     E++   ++  L     +  
Sbjct: 13  PQNTGNIARLCAGTDVELILIGKLGFSLSDKYLKRAGLDYWEYVTLHKVDTLEQFFSQFP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKA 262
              ++   LS   +K   +   +D I  I G E  GL    ++     +  + M   I++
Sbjct: 73  DNIYEYAFLSKFGEKYYTEIPLSDNIITIFGNESSGLPEMIRDRFMDRLYRIPMNDKIRS 132

Query: 263 LNVSNAAAVALY--ITQNHFA 281
            N+SN+ A+ LY  + +N+F 
Sbjct: 133 QNLSNSVAIVLYDILRRNNFG 153


>gi|307721129|ref|YP_003892269.1| tRNA/rRNA methyltransferase SpoU [Sulfurimonas autotrophica DSM
           16294]
 gi|306979222|gb|ADN09257.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurimonas autotrophica DSM
           16294]
          Length = 156

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P+N GAI R  V       +        +   + ++     + +      N+
Sbjct: 5   LVLVNPQIPNNTGAIGRLCVNAGATLHLIKPIGFDIDEKAVRRAGLDYWDKLDLKVWENI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +  +  +         ++ + +P       +   +  G+E KG+         +    +
Sbjct: 65  EEFFEH-NDITCNAYFATTKTDRPYFDADFKEGDYIFFGSETKGIPEDILNKYKSQNITI 123

Query: 255 HMP--GIIKALNVSNAAAVALY--ITQNH 279
            M   G   +LN++ +  + LY  I QN+
Sbjct: 124 PMTKEGR--SLNLAISTGIVLYDAIRQNY 150


>gi|326331861|ref|ZP_08198148.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
 gi|325950358|gb|EGD42411.1| RNA methyltransferase, TrmH family [Nocardioidaceae bacterium
           Broad-1]
          Length = 229

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 12/148 (8%)

Query: 118 TAPLLSPTLDAV------RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS 171
                  +L+A+      R     + +++     NIG I+R+A AF    +         
Sbjct: 54  VDRYRYWSLEAIVADLDQRRHGFHVAIENWQHDFNIGTIVRTANAFLAAEVHIVGNR--- 110

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIA 230
                 + A     +       ++      +H    + +G+        LE       + 
Sbjct: 111 --RWNRRGAMVTDRYQHVHHHPDVPALAAYLHERDVRLLGIDNLPGSLHLETMELPRSVC 168

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPG 258
            + G EG GL  + + +      +   G
Sbjct: 169 FLFGQEGPGLSEQARASVDGTFSIAQFG 196


>gi|119962280|ref|YP_948432.1| TrmH family RNA methyltransferase [Arthrobacter aurescens TC1]
 gi|119949139|gb|ABM08050.1| putative RNA methyltransferase, TrmH family [Arthrobacter aurescens
           TC1]
          Length = 155

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +          A L ++     +        ++  A   + 
Sbjct: 12  PGNTGNAIRLAAITGAELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVHKDIEAAWAALK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    +SD +         +   L+ G E  GL    ++    T+   L M   ++
Sbjct: 72  PE--RVFAYTSDGETSYTDISYREGDVLMFGPESVGLPDWLKQDPHVTARVRLPMKPSLR 129

Query: 262 ALNVSNAAAVALY--ITQNHFA 281
           +LN++NAA++A++    QN FA
Sbjct: 130 SLNLANAASIAVFEAWRQNGFA 151


>gi|296126080|ref|YP_003633332.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
           12563]
 gi|296017896|gb|ADG71133.1| tRNA/rRNA methyltransferase (SpoU) [Brachyspira murdochii DSM
           12563]
          Length = 162

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 1/151 (0%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  + + L     P N G I R  V  + +  I +K      S  + ++     EH+  I
Sbjct: 9   NFNIAIALYRPEIPANTGNIGRLCVGLNIELHIVSKPSFIISSKEVRRAGLDYWEHLVLI 68

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
           +  N    L+  ++   + I ++   K   ++   ++   L+ G E  GLR    E    
Sbjct: 69  KHENENTFLEYCNNNDRRIIPITKFGKNRYDEFNYSNNDILLFGRESTGLRESLWENDLD 128

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  ++ M   I+++N+SN AA+  Y    H 
Sbjct: 129 NSIYIPMSDNIRSINLSNTAAITAYEAYRHI 159


>gi|242080019|ref|XP_002444778.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
 gi|241941128|gb|EES14273.1| hypothetical protein SORBIDRAFT_07g027830 [Sorghum bicolor]
          Length = 257

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 9/171 (5%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P+ S    A     L +VL     P N G+I R+  A +    +        +   L ++
Sbjct: 62  PVRSGVEVARARRMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGYKVDDTKLKRA 121

Query: 180 ASGALEHIPYIRISNLTDALQKM-HSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
                 ++      +            G  + +  +    +            L+ G+E 
Sbjct: 122 GLDYWPYVVVKIHDSWDHFFDYFMKQEGDKRLLAFTKRGTQIHSDFSYRPGDWLVFGSET 181

Query: 238 KGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           KGL  +  E             + M    ++ LN+S +  +ALY       
Sbjct: 182 KGLPQQALEDCCREGLGGGTLRIPMVETYVRCLNLSVSVGIALYEAARQLN 232


>gi|331002513|ref|ZP_08326031.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410329|gb|EGG89763.1| hypothetical protein HMPREF0491_00893 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 176

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 6/152 (3%)

Query: 135 LMVLD-HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++L+  +  P N G I RS VA +    +            + ++A    E + Y   S
Sbjct: 3   IVLLEPEI--PANTGNIARSCVATNTRLHLIEPLGFRISEKHIKRAAMDYWEKLDYTVYS 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
           ++ D  +K  +        ++ +    ++   N    ++ G E  G+  +   E      
Sbjct: 61  DINDFYEKNPAAREHMYFATTKAHHTYKEVSFNPDDYIMFGKESAGIPEEILSENEDGCI 120

Query: 253 HLHMPGIIKALNVSNAAAVALYI--TQNHFAK 282
            + M G I++LN+SN+ A+ LY    QN F K
Sbjct: 121 RIPMWGDIRSLNLSNSVAIILYEALAQNGFEK 152


>gi|89056101|ref|YP_511552.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
 gi|88865650|gb|ABD56527.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
          Length = 166

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R+ VA   + I+            + ++     +H+      + 
Sbjct: 17  VVLVHPEIPGNTGTIGRTCVALDLELILIHPLGFDISEKSVRRAGLDYWKHVRLSEYDSW 76

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
           T  L+                +     E +  +D   LI G E KGL  +     A    
Sbjct: 77  TAFLEARAPREDQVFLFENGGEGGSVYEPDYPSDAY-LIFGKETKGLPSEVLNGRAHRTF 135

Query: 253 HLHMPG-IIKALNVSNAAAVALYITQNHF 280
           HL M    I++LN+SNAA   +Y     F
Sbjct: 136 HLPMRSPHIRSLNLSNAATAVIYQAMRSF 164


>gi|72393371|ref|XP_847486.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359584|gb|AAX80017.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70803516|gb|AAZ13420.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 373

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 97/293 (33%), Gaps = 44/293 (15%)

Query: 30  YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH 89
           +   +   +            + G   +     +   +   +           W      
Sbjct: 63  WNSTKLLRENGNVRRSHGACVVGGASAIRRVWRDYKIRPNVVYVPDTEPTVASWCLEDEL 122

Query: 90  PFPVKTVPPQTIDKIVGKEAVHQGLALE----TAPLLSPTLDAVRNSQL--LMVLDHVND 143
           P  +    P  I++ +    +  G A E     +P +   L   + S+L  ++VL  +  
Sbjct: 123 PTCIVRCSPVEINRGLLSAELADGHAAEFPIPASPSVETFLGEGKPSRLASMLVLVGLRI 182

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G ++R+AV    + ++              +++ G +    +      +D +  ++
Sbjct: 183 PSNVGTLIRAAVEMGFESVLLIN-CLDPFGEKALRASEGTVFSPQFKIFEPGSDPVSALN 241

Query: 204 SWGF-----QTIGLSSDSKKPLEQEIKN------------------------DKIALILG 234
           S          + L S   +   +  KN                          + LILG
Sbjct: 242 SIAVEHNLLPLLALPSQKAETAFEVAKNLHKINAMRRSQEAEGDAAASHNHIGPL-LILG 300

Query: 235 AEGKGLRPKTQETAT--SMAHLHMPG-IIKALNVSNAAAVALYITQ----NHF 280
           +E KGLR    E +       + +P   +++LNVS A ++ ++  +     HF
Sbjct: 301 SEAKGLRDLAGEWSVPRKFVSVPLPNSTVESLNVSVAGSILIHAFRPAAEKHF 353


>gi|163842120|ref|YP_001626525.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162955596|gb|ABY25111.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 221

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R  +  + +++     NIG+++R A AF    +    R          + A    ++   
Sbjct: 69  RRHEFHVAIENWQHDLNIGSVVRCANAFLAQEVHIIGRR-----RWNRRGAMVTDKYQHV 123

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                + D +    +     IG+ +     PLE      K  L+ G EG GL     E A
Sbjct: 124 RHHPTVEDFVAWAEAEDVAVIGIDNFPDSVPLETYDLPRKCVLVFGQEGPGLTDAVHEKA 183

Query: 249 TSMAHLHMPGIIKALN 264
            +   +   G  +++N
Sbjct: 184 EATLSIAQFGSTRSIN 199


>gi|157413366|ref|YP_001484232.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9215]
 gi|157387941|gb|ABV50646.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9215]
          Length = 160

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 11/147 (7%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I RS  AF+    +        E   L ++       +   +  N    L    
Sbjct: 11  PQNTGNIARSCAAFNIPLNLIEPFGFKLEDKYLKRAGLDYWPLVTVNKYDNFEKFLASKA 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----- 258
           +   + I  S  +   L+         L+ G E  GL     + +  +  + MP      
Sbjct: 71  TK--RIISFSKRNGIYLKDFKFKHDDILLFGREDLGLPDYIIDKSDFLISIFMPNLQTGN 128

Query: 259 ----IIKALNVSNAAAVALYITQNHFA 281
                +++LN+S A  +A+Y       
Sbjct: 129 NAQKGVRSLNLSVACGIAIYEAHKQIN 155


>gi|326389368|ref|ZP_08210936.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994731|gb|EGD53155.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 156

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 11/155 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V       +        +   + ++       +     
Sbjct: 2   PLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----A 248
            NL   L++     F     ++ +KK   +    D   ++ G E  GL     E      
Sbjct: 62  DNLEQFLEQNKGKKF--YLATTKAKKYYHEVKYEDNSYILFGKETAGLPKWLIEKYYEDC 119

Query: 249 TSMAHLHMPGIIK--ALNVSNAAAVALYITQNHFA 281
                + M  +I   +LN+SN+ A+ LY       
Sbjct: 120 ---IRIPMHEVISTRSLNLSNSVAIVLYEALRQLG 151


>gi|48428734|gb|AAT42383.1| putative rRNA methylase [Collimonas fungivorans Ter331]
          Length = 160

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P + + + ++     ++      ++ 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDSKMRRAGLDYHDYATMQVHADW 63

Query: 196 TDALQKMHSWG----FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TAT 249
            D +  M   G     +   +++    P            + G+E +GL P  +E    +
Sbjct: 64  NDFVASMRDAGSYDPSRMFAMTTHGSTPFASLQFRPGDIFVFGSETRGLDPALRESFAPS 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SN  AV +Y     
Sbjct: 124 QRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 153


>gi|37520268|ref|NP_923645.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35211261|dbj|BAC88640.1| gll0699 [Gloeobacter violaceus PCC 7421]
          Length = 162

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 8/157 (5%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+      +VL     P N G + R+  A      +            L ++     EH+
Sbjct: 5   AMGREAFHVVLVDPEIPPNTGNVARTCAATGTSLHLVGTLGFQLSDKYLKRAGLDYWEHV 64

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 +L   L++  +  F  +  S+     L          L+ G+E +GL       
Sbjct: 65  DLHYHPDLGALLEQQSAQRF--VLTSARRGVCLWDFAFQPGDWLVFGSESRGLPEGLL-- 120

Query: 248 ATSM---AHLHMP-GIIKALNVSNAAAVALYITQNHF 280
           +        + +    +++LN+SNA AV L+ +    
Sbjct: 121 SDERHPVVTIPLAEPAVRSLNLSNAVAVVLFESLRQL 157


>gi|225180845|ref|ZP_03734293.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168326|gb|EEG77129.1| RNA methyltransferase, TrmH family, group 2 [Dethiobacter
           alkaliphilus AHT 1]
          Length = 152

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+         +        E   L ++     +H+      +L
Sbjct: 3   IVLVEPEIPPNTGNVSRTCAVTGTTLHLVEPMGFSIEERQLKRAGLDYWQHLNLQVHESL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
              L            LS+  K+       +    L+ G E  GL              +
Sbjct: 63  EHFLDYATDRNCWF--LSTKGKQSYTDIKYHKDDLLVFGRETAGLPDWLLARYPQKCVRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   +++LN+SN+ A+ LY     
Sbjct: 121 PMGPDVRSLNLSNSVAIVLYEALRQ 145


>gi|295401770|ref|ZP_06811735.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112249|ref|YP_003990565.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y4.1MC1]
 gi|294976137|gb|EFG51750.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217350|gb|ADP75954.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp.
           Y4.1MC1]
          Length = 157

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +       ++  +L ++      ++     
Sbjct: 2   PLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISYY 61

Query: 193 SNLTDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQET- 247
            +L +   +  H   +     +   KK  +    +D    +  + G E  GL     E  
Sbjct: 62  DSLDELFGRYPHGEFYFI---TKFGKKYYDSFDFSDTEKDLFFVFGRETTGLPKDLLEAN 118

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M   +++LN+SN AA+ +Y     
Sbjct: 119 MDRCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|226355084|ref|YP_002784824.1| tRNA/rRNA methyltransferase yibK [Deinococcus deserti VCD115]
 gi|226317074|gb|ACO45070.1| putative tRNA/rRNA methyltransferase yibK [Deinococcus deserti
           VCD115]
          Length = 148

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+G + R+      +  +              ++    LE +     ++ 
Sbjct: 3   LVLFEPEKAGNVGNVARTCSVLGAELHLIRPFGFRLHDREFRRAVMDYLEGVTLHEHASW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T     +   G +    S+ + +   Q        L+ G E +GL P     A     L 
Sbjct: 63  TAFQASLP-AGARVFAFSTHATELYTQAGFQQGDYLLFGPESRGL-PAWLRDALPKLKLP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
            PG  ++LN++ AA VA +      
Sbjct: 121 QPGGGRSLNLAVAAGVAAFEAGRQI 145


>gi|212715379|ref|ZP_03323507.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661685|gb|EEB22260.1| hypothetical protein BIFCAT_00274 [Bifidobacterium catenulatum DSM
           16992]
          Length = 227

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 11/131 (8%)

Query: 160 DGIITTKR----YSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGL 212
           D +   +      +PS  ++   +ASGA        ++ L      + ++ +   + I L
Sbjct: 96  DAVSLNEGRVTECAPSGMSMDVPAASGAENGNKLAYMTELAAIDQRIAELKAA--RVIAL 153

Query: 213 SS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV 271
                  P+E      +  ++ GAEG GL  K  E A  + ++   G ++++N   AAAV
Sbjct: 154 DIIPGAVPMETYCFPKRCLMLFGAEGPGLSEKALELADDVVYISQFGSVRSINAGAAAAV 213

Query: 272 ALY-ITQNHFA 281
           +++     H A
Sbjct: 214 SMHAWIAQHAA 224


>gi|289422735|ref|ZP_06424575.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           anaerobius 653-L]
 gi|289156914|gb|EFD05539.1| RNA methyltransferase, TrmH family, group 2 [Peptostreptococcus
           anaerobius 653-L]
          Length = 168

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     PHN G I+R+         +        +   L +      +        + 
Sbjct: 17  IVLVEPEIPHNTGNIIRTCANTGAQLHLIKPLGFSLDDKHLKRCGLDYWDIADIKYYDSF 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHL 254
            +  +K     +     +  ++K       N+   L+ G E KGL     E        +
Sbjct: 77  EELQEKYPEANYF-YATT-KTQKSYADVEYNEGCFLVFGKETKGLPKDLIEKNEGHCIRI 134

Query: 255 HMPG--IIKALNVSNAAAVALYITQNHFA 281
            M G    + LN+SN+ A+ +Y       
Sbjct: 135 PMRGIEGARCLNLSNSVAIVVYEALRQLG 163


>gi|120602052|ref|YP_966452.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|120562281|gb|ABM28025.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
          Length = 188

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 1/141 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G + R   A      +        +   L ++      H+P    S+ 
Sbjct: 33  IVLYHPEIPPNTGNVARLCAATRTRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVWSSW 92

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L +    G + +  S+     + +        L+ G E  GL  +  +       + 
Sbjct: 93  EDFLSR-GVEGRRLVTTSARGGTAVHRFTYAPDDMLVFGPETTGLPQEVLDLTPHRVCIP 151

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           + G ++++N+S A  V LY  
Sbjct: 152 IWGEVRSINLSTATGVVLYQA 172


>gi|184200521|ref|YP_001854728.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
 gi|183580751|dbj|BAG29222.1| putative RNA methyltransferase [Kocuria rhizophila DC2201]
          Length = 154

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 8/142 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDAL-QK 201
           P N G  +R A        +        + A L +  +G   H +  + +    DAL   
Sbjct: 12  PGNTGNAIRLAACTGARLHLVEPLGFNFDHANLRR--AGLDYHDLAVMDVHPTVDALWDA 69

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAHLHMPGI 259
           +     +    +S S          D   L+ G E  GL  K    E       + M   
Sbjct: 70  LGDA--RVFAFTSHSSTRHTDVAYRDGDVLLFGRESTGLPEKVLTDEHVHDRVRIPMLPG 127

Query: 260 IKALNVSNAAAVALYITQNHFA 281
            ++LN++N+A++ALY       
Sbjct: 128 RRSLNLANSASIALYEAWRQLG 149


>gi|325961989|ref|YP_004239895.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468076|gb|ADX71761.1| rRNA methylase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 210

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R     + +++     NIG ++R+A AF    +    R          + A     +   
Sbjct: 54  RRHNFHVAIENWQHDLNIGTVVRTANAFLAKEVHIIGRR-----RWNRRGAMVTDRYQHV 108

Query: 190 IRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                + D +      G   IG+    DS  PLE         L+ G EG GL P+    
Sbjct: 109 RHHPTVEDFVAWAQGEGLAIIGIDIFPDS-VPLETYELPRDCVLVFGQEGPGLTPEVHAA 167

Query: 248 ATSMAHLHMPGIIKALN 264
           A +   +   G  +++N
Sbjct: 168 AAATLSIEQFGSTRSIN 184


>gi|317485782|ref|ZP_07944647.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316922956|gb|EFV44177.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 151

 Score = 73.9 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 1/141 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R   A      +        E   L ++      H+      +L
Sbjct: 3   VVLFQPEIPPNTGNVARLCAAMQVSLHLIEPLGFKLEDRYLKRAGLDYWPHVDMAVWPDL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++     G + +  S+     L +    +  +L+ G E  GL P+    +     + 
Sbjct: 63  DAYIRN-SGAGRRLVLTSARRGAALHRFEFTENDSLVFGRETSGLPPEVIGLSPHHVRIP 121

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           + G ++++N+S AA + L+  
Sbjct: 122 IKGEVRSINLSTAAGIVLFQA 142


>gi|167038402|ref|YP_001665980.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038864|ref|YP_001661849.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
 gi|256751142|ref|ZP_05492024.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300913551|ref|ZP_07130868.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307723434|ref|YP_003903185.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
 gi|320116806|ref|YP_004186965.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853104|gb|ABY91513.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
 gi|166857236|gb|ABY95644.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256750048|gb|EEU63070.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300890236|gb|EFK85381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
 gi|307580495|gb|ADN53894.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
 gi|319929897|gb|ADV80582.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 156

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 11/155 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V       +        +   + ++       +     
Sbjct: 2   PLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKYVKRAGLDYWPLLDLTVY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET----A 248
            NL   L++     F     ++ ++K        D   ++ G E  GL     E      
Sbjct: 62  DNLEQFLEQNKGKKF--YLATTKARKYYHDVKYEDNSYILFGKETAGLPKWLIEKYYEDC 119

Query: 249 TSMAHLHMPGIIK--ALNVSNAAAVALYITQNHFA 281
                + M  +I   +LN+SN+ A+ LY       
Sbjct: 120 ---IRIPMHEVISTRSLNLSNSVAIVLYEALRQLG 151


>gi|315604144|ref|ZP_07879210.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313850|gb|EFU61901.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 153

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R +        +        + A L ++     +        NL +AL ++ 
Sbjct: 12  PGNTGAAIRLSACTGSMLHLIKPLGFDMDDAKLRRAGLDYHDLAHVTVHENLDEALDQVP 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +    +  +     +    D   L+ G E  GL  +         +  +HM   ++
Sbjct: 72  G---RVWAFTGHAHTMHSEVAYADGDGLLFGRESVGLSSEAMAHRRVEDLVRIHMVKGVR 128

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN++N+A++ALY       
Sbjct: 129 SLNLANSASIALYEAWRQLG 148


>gi|163748763|ref|ZP_02156015.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica
           KT99]
 gi|161331537|gb|EDQ02342.1| RNA methyltransferase, TrmH family, group 2 [Shewanella benthica
           KT99]
          Length = 154

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +     R  +    L  M   
Sbjct: 14  NTGNIIRLCANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLTCVTRYKDYASFLVAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL  +  E+   +    + M G  ++L
Sbjct: 72  GRRIMACTTKGSRPHSELSFEKGDVLLFGPETRGLPMEIIESLPTSQRLKIPMAGTSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQIG 149


>gi|288555214|ref|YP_003427149.1| rRNA methylase [Bacillus pseudofirmus OF4]
 gi|288546374|gb|ADC50257.1| rRNA methylase [Bacillus pseudofirmus OF4]
          Length = 157

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++       +      +L
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGCDYWPSVDIHYYDSL 64

Query: 196 TDALQKMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSM 251
            +         F    T+G    +    +    N     + G E  G+     +      
Sbjct: 65  EELFDTYKEGEFYFIETVGT--KNFSEFDYSDDNKDHFFVFGRETTGIPQDIIDRNLDRC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             +     +++LNVSN AA+ +Y     
Sbjct: 123 FRIPQTDKVRSLNVSNTAAIVIYEAIRQ 150


>gi|160932290|ref|ZP_02079681.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753]
 gi|156868892|gb|EDO62264.1| hypothetical protein CLOLEP_01125 [Clostridium leptum DSM 753]
          Length = 168

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +QL +V+     P N G + R+  A      +        +   L ++       +    
Sbjct: 2   AQLNIVMVEPEIPQNTGNVARTCAATGARLHLVGPMGFTIDDKKLKRAGLDYWHLLDITY 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             NL +  +K     F     S+ +          D   L+ G E  GL  K   +   +
Sbjct: 62  YENLEEFFEKNKGGNF--YYFSTKAPHRHTDLAYPDNCYLLFGKETAGLPEKLLFDNPDT 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    ++LN+SN+ AV +Y     + 
Sbjct: 120 TVRIPMIDEARSLNLSNSVAVGVYEVLRQWG 150


>gi|126174613|ref|YP_001050762.1| RNA methyltransferase [Shewanella baltica OS155]
 gi|125997818|gb|ABN61893.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS155]
          Length = 242

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        +   +     +   +A +A  +      +++ +L
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRVEPDGHSIALAAGASDILKHLVKVDSL 66

Query: 196 TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +A+          I  S+             ++   L  E  N  +A++ G E  GL  
Sbjct: 67  AEAIADC----CLVIATSARSRTLDWPMLEPREAGVRLATEALNGPVAIVFGRENHGLSN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
           +  +  T    +       +LN++ A  +  Y T+  H A+
Sbjct: 123 EELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRIAHLAQ 163


>gi|322420889|ref|YP_004200112.1| tRNA/rRNA methyltransferase SpoU [Geobacter sp. M18]
 gi|320127276|gb|ADW14836.1| tRNA/rRNA methyltransferase (SpoU) [Geobacter sp. M18]
          Length = 161

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
                +VL     P N G I R   A      +  K    ++   L ++       +   
Sbjct: 4   QKPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEVDIR 63

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +L +AL++    G + I  S  + K   +   +    ++ G E KGL  +  E    
Sbjct: 64  YWEDL-EALKRAFPEG-RLIYTSKKAPKSYLELSFHPGDFIVFGKETKGLPEELIEAHPE 121

Query: 251 M-AHLHMPGIIKALNVSNAAAVALYITQNH 279
               + + G +++LN+S +A + LY     
Sbjct: 122 TSVRIPIIGRVRSLNLSTSAGIVLYEALRQ 151


>gi|241890130|ref|ZP_04777428.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
           ATCC 10379]
 gi|241863752|gb|EER68136.1| RNA methyltransferase, TrmH family, group 2 [Gemella haemolysans
           ATCC 10379]
          Length = 157

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 9/154 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   + ++     EH+  +   + 
Sbjct: 4   IVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLVVWDSF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQET-ATS 250
            + L+  +   +  I  +    K           N+ I  I G E KGL  + +E  +  
Sbjct: 64  DEFLEATNDKHYYLI--TKFGTKNYCDFDFSNTDNEDIYFIFGRETKGLPKEFREKYSEQ 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI--TQNHFAK 282
              + M   +++LN+SN AA+ +Y    Q +F K
Sbjct: 122 ALRIPMSENVRSLNLSNTAALIIYEALRQQNFNK 155


>gi|255716658|ref|XP_002554610.1| KLTH0F09350p [Lachancea thermotolerans]
 gi|238935993|emb|CAR24173.1| KLTH0F09350p [Lachancea thermotolerans]
          Length = 1396

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 5/152 (3%)

Query: 128  AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             V+ S L+++   V+   N+G I R        G++T               A  A   +
Sbjct: 1240 TVKRSPLIVIASLVDKAPNLGGICRLCDVLGA-GLLTVHDIRIKNHPQFKSVAVTADRWM 1298

Query: 188  PYIRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDKIALILGAEGKGLRPK 243
            P   ++  ++T  ++     G+  IGL  +D    L+ +     K  ++LG E +G+   
Sbjct: 1299 PMEAVTTQDITKFMRSKKQEGYTLIGLEQTDKSIQLDNKFQFPPKSLILLGTESEGIPGH 1358

Query: 244  TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                      +   G+I+++N+  A AV ++ 
Sbjct: 1359 LLSELDLCLEIKQSGVIRSMNIQTATAVIVHA 1390


>gi|222640835|gb|EEE68967.1| hypothetical protein OsJ_27872 [Oryza sativa Japonica Group]
          Length = 254

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 9/173 (5%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P+ S    A     L +VL     P N G+I R+  A +    +        +   L 
Sbjct: 57  VGPVGSGAEVARAKRMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLK 116

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGA 235
           ++      ++      +  +            + +  +                 L+ G+
Sbjct: 117 RAGLDYWPYVVVKIHDSWNEFRDYFMKQDGEKRLLAFTKRGTSIHSDFSYKPGDWLVFGS 176

Query: 236 EGKGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           E KGL     E  +          + M    ++ LN+S +  VALY       
Sbjct: 177 ETKGLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLN 229


>gi|332292582|ref|YP_004431191.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170668|gb|AEE19923.1| tRNA/rRNA methyltransferase (SpoU) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 150

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P+N G I R A+   C   +        +   L ++     +H+      N 
Sbjct: 4   IVLINPEIPNNTGNIGRLALGSGCKLHLVKPFGFEIDDTRLKRAGLDYWQHLDVQYYDNT 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D      +   +   LSS   K        + + L+ G E KGL  + T++    +  +
Sbjct: 64  EDFFN--KNAFAKMAFLSSHGTKSHYDIPFEEDLFLVFGKESKGLPKEITEKHPDQLYKI 121

Query: 255 HMPG-IIKALNVSNAAAVALYITQNHFA 281
            +    I++LN++NA  +  Y       
Sbjct: 122 PLFSEHIRSLNLANAVGIVAYEGIRQLN 149


>gi|320093674|ref|ZP_08025549.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979373|gb|EFW10860.1| TrmH family RNA methyltransferase [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 153

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R +        +        + A L ++     +        +L  AL    
Sbjct: 12  PGNTGAAIRLSACTGSVLHLVRPLGFDMDDAKLRRAGLDYHDLAHVRVHDSLDGAL---- 67

Query: 204 SWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGI 259
             G   +   L+  +++        D   L+LG E  GL  +            + M   
Sbjct: 68  -AGIPGRVWALTGRAERAYTDVAYGDGDGLLLGRESVGLSEEAMSHPGVAGRVRITMVPG 126

Query: 260 IKALNVSNAAAVALYITQNHFA 281
           +++LN++N+AA+ LY       
Sbjct: 127 VRSLNLANSAAIVLYEAWRQLG 148


>gi|228475926|ref|ZP_04060636.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           SK119]
 gi|228270081|gb|EEK11551.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus hominis
           SK119]
          Length = 156

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     EH+      N+
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHENI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPKTQET-ATSM 251
               +  +   +    L+   K+       ++       I G E  GL    +E  A + 
Sbjct: 65  ESFFEVTNGKYYL---LTKFGKQTYSDFDFSNTEIENYFIFGRETTGLPDWVKEKYADTA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSDHIRSLNLSNTAALLIYEALRQ 149


>gi|311234374|gb|ADP87228.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1]
          Length = 158

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 1/141 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G + R   A      +        +   L ++      H+P    ++ 
Sbjct: 3   IVLYHPEIPPNTGNVARLCAATRTRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVWASW 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L +    G + +  S+     + +        L+ G E  GL  +  +       + 
Sbjct: 63  EDFLSR-GVEGRRLVTTSARGGTAVHRFTYAPDDMLVFGPETTGLPQEVLDLTPHRVCIP 121

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           + G ++++N+S A  V LY  
Sbjct: 122 IWGEVRSINLSTATGVVLYQA 142


>gi|46580643|ref|YP_011451.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450062|gb|AAS96711.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 159

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 1/141 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G + R   A      +        +   L ++      H+P    ++ 
Sbjct: 4   IVLYHPEIPPNTGNVARLCAATRTRLHLIEPLGFSLDDRYLKRAGLDYWPHVPLTVWASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L +    G + +  S+     + +        L+ G E  GL  +  +       + 
Sbjct: 64  EDFLSR-GVEGRRLVTTSARGGTAVHRFTYAPDDMLVFGPETTGLPQEVLDLTPHRVCIP 122

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           + G ++++N+S A  V LY  
Sbjct: 123 IWGEVRSINLSTATGVVLYQA 143


>gi|90408298|ref|ZP_01216463.1| putative rRNA methylase, SpoU family protein [Psychromonas sp.
           CNPT3]
 gi|90310599|gb|EAS38719.1| putative rRNA methylase, SpoU family protein [Psychromonas sp.
           CNPT3]
          Length = 154

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 4/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GAI+R      C   +            + ++     E        N  D L+ + 
Sbjct: 12  PQNTGAIIRVCANTGCILHLIEPLGFDFNEKRVRRAGLDYHEIANIKHHKNYQDFLESVK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               + +  ++ +     Q        L+ G E +GL  +  +         + M    +
Sbjct: 72  GK--RILACTTKTTTYHSQANFQSGDVLLFGPETRGLPSELLDALPLEQKLRIPMQPNSR 129

Query: 262 ALNVSNAAAVALYITQNHF 280
           ++N++NA +V +Y      
Sbjct: 130 SMNLANAVSVFVYEAWRQL 148


>gi|83590714|ref|YP_430723.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC
           39073]
 gi|83573628|gb|ABC20180.1| RNA methyltransferase TrmH, group 2 [Moorella thermoacetica ATCC
           39073]
          Length = 155

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 3/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+         +        +   L ++     E +  +  
Sbjct: 2   PLHVVLYQPEIPQNTGNIARTCALTGTFLHLIHPLGFRLDEKHLKRAGLDYWEEVNILEH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM 251
           S      +           LS+  ++   +        L+ G E +GL     E A   +
Sbjct: 62  STWAAFREAYPDAN--CYYLSTKGQRRYTKVDYRPDDFLVFGPETRGLPASILEPAGDRV 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M   +++LN++N+ A+ LY      
Sbjct: 120 LRVPMRPGLRSLNLANSVAIVLYEALRQL 148


>gi|13472427|ref|NP_103994.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14023173|dbj|BAB49780.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 152

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 2/140 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N +L + L   +   N G ILR A        I      P     L ++    LE     
Sbjct: 2   NRRLRIALYQPDIAGNTGTILRFAACLGLGVDIIEPAGFPLSDKALKRAGMDYLEMAALT 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +      +    G + + LS+ +  P       D   L+ G E  G+     + A +
Sbjct: 62  RHVDWNAFEDRRKKDGRRLVLLSTKAATPYTNFSFADGDILLFGRESAGVPDPVHQAADA 121

Query: 251 MAHLHMPGIIKALNV--SNA 268
              + M G  +++NV  S A
Sbjct: 122 RLTIPMQGSARSINVALSVA 141


>gi|154252688|ref|YP_001413512.1| tRNA/rRNA methyltransferase SpoU [Parvibaculum lavamentivorans
           DS-1]
 gi|154156638|gb|ABS63855.1| tRNA/rRNA methyltransferase (SpoU) [Parvibaculum lavamentivorans
           DS-1]
          Length = 175

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 5/138 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS--GALEHIPYIRISNLTDALQK 201
           P N+G ++R          I      P     L ++A   GAL      R ++   A  +
Sbjct: 29  PPNVGTLIRLGACLGVPVHIIEPCGFPWSDRDLKRAAMDYGALA--DVTRHASWA-AFAE 85

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             +   + I L++ +              L++G E  G+  +  + A +   + M    +
Sbjct: 86  TRTAASRLILLTTKTHNNFMDFTFRPGDTLLIGRESAGVPAEVHDAADARVTIPMRPPAR 145

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++ AA++ L      
Sbjct: 146 SLNMAVAASMVLTEALRQ 163


>gi|282892401|ref|ZP_06300751.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497803|gb|EFB40164.1| hypothetical protein pah_c253o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 150

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 4/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R+      + I+            L ++     E +    + NL
Sbjct: 3   VVLFQPQIPQNTGNVVRTCAVTGQNLILIGPLGFSITDRWLKRAGLDYWEGVNVQVLDNL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + L +           SS + +         K  LI GAE  GL              +
Sbjct: 63  EELLDRTSEN---FYFFSSHATQNYTDVSYQPKDLLIFGAETHGLPESITNKWPNRCVKI 119

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   ++ LN++ +  + +Y     
Sbjct: 120 PMVSGVRCLNLATSVGIGVYEAWRQ 144


>gi|163793894|ref|ZP_02187868.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
 gi|159181005|gb|EDP65522.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
          Length = 191

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIPYIRISNLT 196
           + ++   N+ A++R+A AF    + +            V    A+G+L + P+    +  
Sbjct: 10  EEISKAMNVAALMRTAHAFGASFVFSIGSVRAGHEWGRVDTSDATGSLPYYPF----DDP 65

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           DA+      G + +G+  +D   PL       + A ++G E   L P+       +  + 
Sbjct: 66  DAVMFPK--GCELVGVEITDEAVPLPSFHHPRRAAYVMGRERGALSPELLSRCDHVVRIP 123

Query: 256 MPGIIKALNVSNAAAVALYIT 276
                 ++N++ A A+ +Y  
Sbjct: 124 --SRF-SINLAIAGAMVMYDR 141


>gi|159472665|ref|XP_001694465.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276689|gb|EDP02460.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 233

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 172 ESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ---EIKNDK 228
            S    + A  + + +         + +  + + G +           L +        +
Sbjct: 16  ISKKRGRIARCSSQWLDIRTFPTTAECVAALRADGREIWATDLAQSAILLEGTAIQLPPR 75

Query: 229 IALILGAEGKGLRPKTQETATSM----AHLHMPGIIKALNVSNAAAVALY 274
           +A+++G E  G+  +  E A         L M G   + N+S A A+ L+
Sbjct: 76  LAIVMGREADGVSAEMLEAANRCTGLRVCLPMYGYNDSFNLSVATAMVLH 125


>gi|317132499|ref|YP_004091813.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
 gi|315470478|gb|ADU27082.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
           YUAN-3]
          Length = 169

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 4/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G + R+  A      +        + A L ++       +      NL D    + 
Sbjct: 12  PQNTGNVARTCAATGAHLHLVKPLGFAIDDAKLKRAGLDYWHLLNITYYENLADF---LR 68

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKA 262
                    SS + +            L+ G E  GL  +       S   L +    + 
Sbjct: 69  RAPGPCFFFSSKAPRSYTDVHYPPDACLVFGKETAGLPEELLLAHEDSAVRLPIRAEARC 128

Query: 263 LNVSNAAAVALYITQNH 279
           LN+SNA AV  Y     
Sbjct: 129 LNLSNAVAVGAYEALRQ 145


>gi|239826057|ref|YP_002948681.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70]
 gi|239806350|gb|ACS23415.1| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. WCH70]
          Length = 157

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 8/152 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+  A      +       ++  +L ++      ++     
Sbjct: 2   PLHVVLYQPEIPANTGNIARTCAATDTALHLIRPLGFSTDDKMLKRAGLDYWPYVNISYY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----KIALILGAEGKGLRPKTQET- 247
            +L +  ++  +  F  I  +   KK  +    +D        + G E  GL     E  
Sbjct: 62  DSLEELFERYPNGEFYFI--TKFGKKYYDSFDFSDMEKDHF-FVFGRETTGLPKDLLEAN 118

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M   +++LN+SN AA+ +Y     
Sbjct: 119 MDRCLRIPMNDKVRSLNLSNTAAILVYEALRQ 150


>gi|329895795|ref|ZP_08271171.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC3088]
 gi|328922157|gb|EGG29514.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC3088]
          Length = 158

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C+  +        +   L ++     +        N 
Sbjct: 4   VVLFEPEIPPNTGNIMRLCANTGCELHLVEPLGFSLDEKRLRRAGMDYRDISVVTSHRNW 63

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
            + L  +   S   +    ++   +   + +      +++G E +GL     E+  A   
Sbjct: 64  EECLHAIRVKSPSTRVFACTTKGSQAHTKAVFQSGDIILMGPETRGLPINIIESTPAEYR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SNA AV LY     
Sbjct: 124 IRIPMAPESRSLNLSNATAVILYEALRQ 151


>gi|327399542|ref|YP_004340411.1| tRNA/rRNA methyltransferase SpoU [Hippea maritima DSM 10411]
 gi|327182171|gb|AEA34352.1| tRNA/rRNA methyltransferase (SpoU) [Hippea maritima DSM 10411]
          Length = 162

 Score = 73.5 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 3/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R  VA +    +            L ++     E++      +L+D L K  
Sbjct: 25  PPNTGNIARLCVATNSTLHLIKPLGFSLNDKRLKRAGLDYWENLKLEMHDSLSDFLNKYG 84

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIKA 262
           +  F     S+ + KP  +    +   LI G+E +GL     +       ++ M   +++
Sbjct: 85  NRKFFL--ASTKAVKPYFEVYFEEGDFLIFGSETQGLPNDFIEANLDKAINIPMTDKVRS 142

Query: 263 LNVSNAAAVALYITQNH 279
           LN++++ AV LY     
Sbjct: 143 LNLADSVAVVLYEAIRQ 159


>gi|116671282|ref|YP_832215.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
 gi|116611391|gb|ABK04115.1| tRNA/rRNA methyltransferase (SpoU) [Arthrobacter sp. FB24]
          Length = 155

 Score = 73.5 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +          A L ++     +        ++  A + + 
Sbjct: 12  PGNTGNAIRLAAITGAELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVHKSIEAAWEALQ 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    +SD +             L+ G E  GL  + +     TS   L M   ++
Sbjct: 72  PE--RVYAFTSDGETSYADISYLPGDVLLFGPESVGLPAELKNDPHVTSRVRLPMLPSLR 129

Query: 262 ALNVSNAAAVALY--ITQNHFA 281
           +LN++NAA++A++    QN FA
Sbjct: 130 SLNLANAASIAVFEAWRQNGFA 151


>gi|260881101|ref|ZP_05403620.2| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
 gi|260849520|gb|EEX69527.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
           20544]
          Length = 167

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 3/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R       +  +       ++   L ++       +    
Sbjct: 3   KPLHIVLIEPEIPGNTGNIARLCAGTGIELHLVRPLGFSTDDKHLKRAGLDYWPLVKVHY 62

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
             N  +  ++     F    LS+ + +   +        L+ G E  G+     +     
Sbjct: 63  HDNFAEVQERYAGHNF--YYLSTKAPRSYTEVHYTMDDMLVFGKESAGIPEPILKANWEH 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    ++LN+SN+ AV  Y      
Sbjct: 121 CVRIPMIPEARSLNLSNSVAVVAYEAMRQM 150


>gi|332654005|ref|ZP_08419749.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
 gi|332517091|gb|EGJ46696.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
          Length = 171

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +            + ++       +      NL
Sbjct: 4   IVLVEPEIPQNCGNIARTCAATRSRLHLIEPLGFDISEKAVRRAGLDYWPMVDLRVYRNL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
                +  +        ++ + +        D   L  G E  GL  + +         +
Sbjct: 64  EHFFAENPNPDLWL--ATTKAPQDYTGATFRDNCYLFFGKETAGLPEEFRLAHYDRCIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN+SN+ A+  Y     
Sbjct: 122 PMRADARSLNLSNSVAILAYEALRQ 146


>gi|218289430|ref|ZP_03493664.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240536|gb|EED07717.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 154

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+     C   +  K    ++   L ++       +      +L
Sbjct: 3   IVLFEPEIPANTGNVARTCAVTGCTLHLVGKLGFSTDDRQLKRAGLDYWHLLDIRYHDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            + L +++  G     + ++  +   +        L+ G E KGL     E  A  +  +
Sbjct: 63  EE-LWELYPEGVFHY-VETEGGRWYTEVAYGPNDFLVFGKETKGLPKDVIEAHADHVVRI 120

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M      ++LN+SNA AV ++     
Sbjct: 121 PMIDHAAARSLNLSNAVAVVVFEALRQ 147


>gi|314934019|ref|ZP_07841384.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
           C87]
 gi|313654169|gb|EFS17926.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus caprae
           C87]
          Length = 156

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     EH+      ++
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTFTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHESI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPKTQET-ATSM 251
            +         +    L+   K+        + I     I G E  GL    +E  A + 
Sbjct: 65  EEFFDSTEGNYYL---LTKFGKQTYSDFDFTNTIENHYFIFGRETTGLPDWVKEKYADTA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSDKIRSLNLSNTAALLIYEALRQ 149


>gi|225420403|ref|ZP_03762706.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme
           DSM 15981]
 gi|225040954|gb|EEG51200.1| hypothetical protein CLOSTASPAR_06748 [Clostridium asparagiforme
           DSM 15981]
          Length = 169

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 3/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +            + ++     + +     ++ 
Sbjct: 4   VVLLEPEMPANTGNIGRTCVATGTRLHLIEPLGFKLSEKAIKRAGLDYWDKLDVQVYADY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L +           ++ + +   +        L+ G E  G+  +           +
Sbjct: 64  QDFLDRNPQAKGNLYFATTKAHQLYTEPAYRPDCYLMFGKESAGIPEEILVANEPYCVRI 123

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFAK 282
            M G I++LN+SN+ ++ LY    QN F +
Sbjct: 124 PMWGEIRSLNLSNSVSIVLYEALRQNRFGE 153


>gi|84393040|ref|ZP_00991806.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01]
 gi|84376292|gb|EAP93174.1| rRNA methylase, SpoU family [Vibrio splendidus 12B01]
          Length = 159

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R +     +  +        E   + ++     +     R  NL   L+ +   
Sbjct: 14  NTGNIIRLSANCGANLHLIEPLGFDFEEKKVRRAGLDYHDLARVKRHKNLEAFLEYLENE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGII 260
               ++    ++ +              L+ G E +GL  +  E+        + M    
Sbjct: 74  REGDYRIFACTTKTTGHHVDAKFQQGDVLMFGPESRGLPAEFIESMPMEQRIRIPMMPEA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|307611358|emb|CBX01019.1| hypothetical protein LPW_27211 [Legionella pneumophila 130b]
          Length = 149

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 3/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   + ++     +    +   N    LQ   
Sbjct: 12  PPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYENWQTFLQSHS 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               +    S+  K             L+ G E  GL  +      S   + M    ++L
Sbjct: 72  QR--RLYCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTIRIPMRENNRSL 128

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+ LY      
Sbjct: 129 NLSNAVAIILYEAWRQM 145


>gi|114798567|ref|YP_761999.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114738741|gb|ABI76866.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 177

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + ++ P N+GA++R+A AF    + +       + A  A ++  +   IPY +  +L D 
Sbjct: 10  ERISKPMNLGALMRTAHAFGASFVFSIDAERNLKEAYAADTSK-SAGQIPYYQWDSLDD- 67

Query: 199 LQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHM 256
           +Q     G Q +G+   D    L       + A ILG E KG L  +       +  +  
Sbjct: 68  MQLPK--GCQLVGIELTDDAVELPVFRHPPQAAYILGPE-KGNLSAEAVARCAHVVKIPT 124

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
              I   NVS A A+ +Y    H +
Sbjct: 125 RFCI---NVSLAGALVMYD--RHLS 144


>gi|54295332|ref|YP_127747.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens]
 gi|53755164|emb|CAH16657.1| hypothetical protein lpl2417 [Legionella pneumophila str. Lens]
          Length = 149

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 3/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   + ++     +    +   N    LQ   
Sbjct: 12  PPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYENWQTFLQSHS 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               +    S+  K             L+ G E  GL  +      S   + M    ++L
Sbjct: 72  QR--RLYCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTIRIPMRENNRSL 128

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+ LY      
Sbjct: 129 NLSNAVAIILYEAWRQM 145


>gi|156972520|ref|YP_001443427.1| RNA methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|156524114|gb|ABU69200.1| hypothetical protein VIBHAR_00152 [Vibrio harveyi ATCC BAA-1116]
          Length = 159

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R       +  +        E   + ++     +     R  +    L+ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYQAFLEYLEKE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
               ++    ++ +          +   L+ G E +GL     ++        + M    
Sbjct: 74  KQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPADVIDSLPMEQRIRIPMMPDA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|154508741|ref|ZP_02044383.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798375|gb|EDN80795.1| hypothetical protein ACTODO_01249 [Actinomyces odontolyticus ATCC
           17982]
          Length = 153

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 5/140 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R +        +        + A L ++     +    +   +L +AL ++ 
Sbjct: 12  PGNTGAAIRLSACTGSMLHLVKPLGFDMDDAKLRRAGLDYHDLAHVMVHDSLDEALAEVP 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +   L+  +          D   L+ G E  GL               + M   ++
Sbjct: 72  G---RVWALTGHATTMYSDVSYADGDGLLFGRESVGLSEDAMHHPRVEDRVRIQMVDGVR 128

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN++N+A++ LY       
Sbjct: 129 SLNLANSASIVLYEAWRQLG 148


>gi|325275734|ref|ZP_08141616.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324099138|gb|EGB97102.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 153

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCHLHLIEPISFELDDKRLRRAGLDYHEYATLKRHQSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            + L+ + +   +    ++    P  +       A + G E +GL  +  ++  A     
Sbjct: 64  AECLESLGNP--RLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV +Y    QN FA
Sbjct: 122 LPMRPGCRSLNLSNTVAVTVYEAWRQNGFA 151


>gi|329766981|ref|ZP_08258509.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341]
 gi|328837706|gb|EGF87331.1| hypothetical protein HMPREF0428_00206 [Gemella haemolysans M341]
          Length = 157

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 9/154 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   + ++     EH+  +   + 
Sbjct: 4   IVLFQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKHVKRAGLDYWEHLDLVVWDSF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK----NDKIALILGAEGKGLRPKTQET-ATS 250
            + L+  +   +  I  +    K           N+ I  I G E KGL  + +E  +  
Sbjct: 64  DEFLEATNDKHYYLI--TKFGSKNYCDFDFSNEENEDIYFIFGRETKGLPKEFREKYSEQ 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH--FAK 282
              + M   +++LN+SN AA+ +Y       F K
Sbjct: 122 ALRIPMSENVRSLNLSNTAALIIYEALRQQSFNK 155


>gi|293192913|ref|ZP_06609757.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
 gi|292819969|gb|EFF78968.1| RNA methyltransferase, TrmH family [Actinomyces odontolyticus
           F0309]
          Length = 153

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 5/140 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R +        +        + A L ++     +    +   +L +AL ++ 
Sbjct: 12  PGNTGAAIRLSACTGSMLHLVEPLGFDMDDAKLRRAGLDYHDLAHVMVHDSLDEALAEVP 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +   L+  +          D   L+ G E  GL               + M   ++
Sbjct: 72  G---RVWALTGHATTMYSDVSYADGDGLLFGRESVGLSEDAMHHPRVEDRVRIQMVDGVR 128

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN++N+A++ LY       
Sbjct: 129 SLNLANSASIVLYEAWRQLG 148


>gi|116491172|ref|YP_810716.1| rRNA methylase (SpoU class) [Oenococcus oeni PSU-1]
 gi|118587352|ref|ZP_01544778.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163]
 gi|290890688|ref|ZP_06553758.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429]
 gi|116091897|gb|ABJ57051.1| Predicted rRNA methylase (SpoU class) [Oenococcus oeni PSU-1]
 gi|118432176|gb|EAV38916.1| rRNA methyltransferase, SpoU family [Oenococcus oeni ATCC BAA-1163]
 gi|290479663|gb|EFD88317.1| hypothetical protein AWRIB429_1148 [Oenococcus oeni AWRIB429]
          Length = 168

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P N G I R+A A +    +        +   + ++      ++  +   NL
Sbjct: 4   IVLFEPSMPANTGNIARTATAINARLHLIKPLGFDLDDKKVIRAGLDYWSNVDLVIHENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRP-KTQETATSM 251
            + L+ + +     +  S  +K   +Q   ++       + G E  GL     ++     
Sbjct: 64  PEFLKTIGNGKLFLV--SKYAKISYDQADFSNTSVDQYFLFGNEAYGLPEVFMRKNPEKA 121

Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNH 279
             +      +++LN+SN+ A+ LY     
Sbjct: 122 IRIPQNDQHVRSLNLSNSVAIVLYEAMRQ 150


>gi|269962479|ref|ZP_06176828.1| rRNA methyltransferase [Vibrio harveyi 1DA3]
 gi|269832775|gb|EEZ86885.1| rRNA methyltransferase [Vibrio harveyi 1DA3]
          Length = 159

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R       +  +        E   + ++     +     R  +    L+ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYQAFLEYLEKE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
               ++    ++ +          +   L+ G E +GL     ++        + M    
Sbjct: 74  KQGNYRLFACTTKTTGHHVDAKYQEGDVLMFGPETRGLPADVIDSLPMEQRIRIPMMPDA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|296241772|ref|YP_003649259.1| tRNA/rRNA methyltransferase [Thermosphaera aggregans DSM 11486]
 gi|296094356|gb|ADG90307.1| tRNA/rRNA methyltransferase (SpoU) [Thermosphaera aggregans DSM
           11486]
          Length = 232

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 19/155 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL  +   +N+G I R+ V F  D +      S S    L  SA G       + + +L
Sbjct: 4   VVLVGIEGAYNLGVISRTCVNFEVDELYLVNP-SASIKEALIYSAKGKSFLEKAVVVDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-------LEQEIKN-------DKIALILGAEGKGLR 241
            +AL+ + +     +  S+    P       ++ E           K+AL+ G E  GL 
Sbjct: 63  DEALKGVDAS----VATSAKGYSPGDVLRQAIDIETFTSQIAPRIGKLALVFGRESTGLT 118

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +       +  +        LNVS A A+ L+  
Sbjct: 119 REELSKTDFLVSIPGNPEYPVLNVSQAVAIFLWEL 153


>gi|241205747|ref|YP_002976843.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859637|gb|ACS57304.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 153

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L + L   + P N G ILR A        +            L ++    +      R
Sbjct: 2   TSLRLALYQPDIPGNTGTILRLAACLGFAVDLIEPAGFDISDRNLKRAGMDYIAAAALTR 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             N         + G + I  S+ + +            L+ G E  G+  +  E A + 
Sbjct: 62  HVNWDRFEAWRLTTGRRLILASTKAAERYTDLAFRPDDVLLFGRESAGVPDQVHERADAR 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    +++NV+ +AA+ +      
Sbjct: 122 VLIPMVEGQRSINVAVSAAMIVGEAMRQ 149


>gi|54023445|ref|YP_117687.1| hypothetical protein nfa14780 [Nocardia farcinica IFM 10152]
 gi|54014953|dbj|BAD56323.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 165

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 10/138 (7%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G + RSA+ +    + T  R    ++    K    A   IP     ++ D +  +   
Sbjct: 17  NVGTLWRSALTYEAAMLATVGRRYKPQAGDTTK----APNSIPLHHFEDVADLVDHLP-H 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   IG+  D +        + + AL +LGAE  GL          +  +  P    +LN
Sbjct: 72  GCPLIGVELDPRAESLTTFAHPRRALYLLGAEDHGLPEAVLTLCHQVIQIPSPAPW-SLN 130

Query: 265 VSNAAAVALYITQNHFAK 282
           VS A ++ L+   + F K
Sbjct: 131 VSVAGSLVLH---DRFVK 145


>gi|329902629|ref|ZP_08273188.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548687|gb|EGF33332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 156

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P + A + ++     ++       + 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHDYATMQVHPDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           +  +  +     +   L++    P            + G+E KGL P  +E+   +    
Sbjct: 64  SRFIATVQPDPQRMFALTTHGSTPFATGQFRPGDVFVFGSETKGLDPALRESFPPSQRIR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV +Y     
Sbjct: 124 LPMRPDNRSLNLSNTVAVVVYEAWRQ 149


>gi|72548478|ref|XP_843394.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|323363911|emb|CBZ12917.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 569

 Score = 73.1 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 6/172 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           NH   +     +   ++    + L + G   +        R    ++     +     D 
Sbjct: 83  NHALVQHFLKLSTNDKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVECGKPIPEFLHDR 142

Query: 86  NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  V  V       +  G +      A+ T P+    +   +    ++VLD++ DP
Sbjct: 143 R---KTDVVLVDRSVSVAVTPGSDGYVGDFAIPTPPMKEKLIANHQRLNRVLVLDNIEDP 199

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYIRISN 194
             +G +LR+A  +  D II T   +      + ++A GA     +P   + +
Sbjct: 200 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHFQTSVPIYTLKD 251


>gi|258545723|ref|ZP_05705957.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis
           ATCC 15826]
 gi|258519040|gb|EEV87899.1| TrmH family group 2 RNA methyltransferase [Cardiobacterium hominis
           ATCC 15826]
          Length = 157

 Score = 73.1 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 6/137 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R          +        +   L ++     E        +       +   
Sbjct: 14  NTGNIIRLCANTGAVLHLIHPLGFAWDDRRLRRAGLDYAEFADIRHHDDWAAFTADIAGR 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT---QETATSMAHLHMPGIIKA 262
                 L++   + L     + +  L+ G+E  GL P      E  T    L M    ++
Sbjct: 74  NIW--ALTTKGTRSLYDATISAEDVLLFGSETAGLPPFIHAELEN-TQKIRLPMRPTSRS 130

Query: 263 LNVSNAAAVALYITQNH 279
           LN+SNA AV LY     
Sbjct: 131 LNLSNAVAVVLYEAIRQ 147


>gi|44662935|gb|AAS47553.1| putative RNA methylase [symbiont bacterium of Paederus fuscipes]
          Length = 158

 Score = 73.1 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        ++  L ++     E+    R  +L
Sbjct: 4   IILFQPEIPPNTGNIIRLCANAGCGLHLIEPLGFELDNKRLRRAGLDYHEYTNVRRYPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+ +     +    ++   +   +       A + G E +GL  + +          
Sbjct: 64  RSCLESLAQP--RLFAFTTKGSRAFHEVDYQRGDAFLFGPESRGLPGRVRNALLPEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M G  ++LN+SN  A+A+Y       
Sbjct: 122 LPMRGGCRSLNLSNTVAIAVYEAWRQLG 149


>gi|91228462|ref|ZP_01262386.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01]
 gi|262392990|ref|YP_003284844.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25]
 gi|91187997|gb|EAS74305.1| rRNA methylase, SpoU family protein [Vibrio alginolyticus 12G01]
 gi|262336584|gb|ACY50379.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio sp. Ex25]
          Length = 159

 Score = 73.1 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R       +  +        E   + ++     +     R  N    L+ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNYQAFLEYLEKE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
               ++    ++ +              L+ G E +GL  +  ++        + M    
Sbjct: 74  KQGNYRLFACTTKTTGHHVDAQYQAGDVLMFGPETRGLPAEIIDSLPMEQRIRIPMMPDA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|297184407|gb|ADI20523.1| predicted rRNA methylase (spou class) [uncultured alpha
           proteobacterium EB080_L58F04]
          Length = 154

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 10/156 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              ++++V   +  PHN GAI R+ VA + + I+            + ++ +   +H+  
Sbjct: 3   EKMKIVLVAPEI--PHNTGAIGRTCVALNLELILIKPYGFSLSEKTVIRAGTRYWKHVRL 60

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT---QE 246
               +    L+                ++     +  D   L+ G E  GL  +    +E
Sbjct: 61  CEYEDWQSFLEDRQPAQDDLYLFEEHGQQSFYAPVYKDDGYLVFGCESTGLPSEVMLGRE 120

Query: 247 TATSMAHLHMPGI-IKALNVS-NAAAVALYITQNHF 280
               + H+ M    +K+LN+S  A AV  Y     F
Sbjct: 121 --DRIFHVPMRNPVVKSLNLSNVATAVI-YQAMRPF 153


>gi|28899635|ref|NP_799240.1| rRNA methylase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361516|ref|ZP_05774563.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus K5030]
 gi|260879125|ref|ZP_05891480.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AN-5034]
 gi|260895488|ref|ZP_05903984.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus Peru-466]
 gi|28807887|dbj|BAC61124.1| rRNA methylase, SpoU family [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088066|gb|EFO37761.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus Peru-466]
 gi|308091610|gb|EFO41305.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AN-5034]
 gi|308112865|gb|EFO50405.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus K5030]
          Length = 159

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R       +  +        E   + ++     +     R  N    L+ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNYQAFLEYLDKE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
               ++    ++ +              L+ G E +GL  +  E         + M    
Sbjct: 74  KQGNYRLFACTTKTTGHHVDAQYKAGDVLMFGPETRGLPAEIIEGLPMEQRIRIPMMPDA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|326201331|ref|ZP_08191203.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           papyrosolvens DSM 2782]
 gi|325988899|gb|EGD49723.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           papyrosolvens DSM 2782]
          Length = 164

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+  A      +        E   L ++     +       +N+
Sbjct: 5   IVLVEPEIPQNTGNIVRTCAATGTVLHLVGPLGFSIEDKYLKRAGLDYWDEADVRYYNNI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSMAHL 254
            +  +K     F     +       + + ++D   L  G E  GL  +  ++       +
Sbjct: 65  NEFFEKFPGKTFY-YSTTKAVNNYCDVQFEDDSFIL-FGKETAGLPEELLRDNKEYCIRI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+SN+ A+ LY     
Sbjct: 123 PMKKGIRSLNLSNSVAIVLYEALRQ 147


>gi|119718571|ref|YP_925536.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
 gi|119539232|gb|ABL83849.1| tRNA/rRNA methyltransferase (SpoU) [Nocardioides sp. JS614]
          Length = 219

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 11/142 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + +++     NIG I+R+A AF    +               + A    +  
Sbjct: 53  DTRRHDFHVAIENWQHDFNIGTIVRTANAFLAAEVHIVGNR-----RWNRRGAMVT-DRY 106

Query: 188 PYIRISNLTDALQ-KMHSWGFQTIGLS----SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            ++R     +AL   +H      + L           LE      ++  + G EG GL  
Sbjct: 107 QHVRHHPTVEALAGYLHEHPGGPVALHGIDNLPGSAHLETTEVPRRVCFLFGQEGPGLSE 166

Query: 243 KTQETATSMAHLHMPGIIKALN 264
             +E       +   G  +++N
Sbjct: 167 TAREACDGTFSIAQFGSTRSIN 188


>gi|325963950|ref|YP_004241856.1| rRNA methylase, , group 2 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470037|gb|ADX73722.1| rRNA methylase, putative, group 2 [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 155

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +          A L ++     +         + +A Q + 
Sbjct: 12  PGNTGNAIRLAAITGAELHLVEPLGFDFSDAKLRRAGLDYHDLAVVTVHPGIEEAWQHLQ 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    +SD               L+ G E  GL  + +     T+   L M   ++
Sbjct: 72  PE--RVYAFTSDGTASYTDISYQPGDVLMFGRESVGLPAELKTDPHVTATVRLPMLPALR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++NAA++A+Y     
Sbjct: 130 SLNLANAASIAVYEAWRQ 147


>gi|255638690|gb|ACU19650.1| unknown [Glycine max]
          Length = 260

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 17/190 (8%)

Query: 102 DKIVGKEAV-HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD 160
            +I  KE    +G+            +A  +  L +VL     P N G I R+  A +  
Sbjct: 52  AEITSKEGTLPRGVG-------EAVNEASSSKILQVVLVSPQIPGNTGCIARTCAASAVG 104

Query: 161 GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF--QTIGLSSDSKK 218
             +        +   L ++      ++      +  D            + +  +    K
Sbjct: 105 LHLVGPLGFQVDDTKLKRAGLDYWPYVVVKIHDSWEDFHNYFRQQEGEKRLLAFTKRGTK 164

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAV 271
              +        LI G+E  GL P+      +         + M    ++ LN+S +  +
Sbjct: 165 IHSEFSYRKGDYLIFGSETSGLPPEALLDCKTEPFGGGTIKIPMVETYVRCLNLSVSVGI 224

Query: 272 ALYITQNHFA 281
           ALY       
Sbjct: 225 ALYEASRQLN 234


>gi|254502349|ref|ZP_05114500.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
 gi|222438420|gb|EEE45099.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
          Length = 156

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 45/136 (33%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR     S    +      P   + L ++    LE     R  N         
Sbjct: 12  PQNTGTMLRLVACMSVTVHLIEPAGFPLSDSALKRAGMDYLERAALKRHLNFAAFDDWRR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +   + + L++ +              L+LG E  G      + A +   + M   +++L
Sbjct: 72  THNRRLVLLTTKTDLAYTDFEFAADDILLLGRESTGAPDAIHQLADARLTIPMAEGMRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           NV+ +  + L      
Sbjct: 132 NVAVSCGMVLGEALRQ 147


>gi|153000909|ref|YP_001366590.1| RNA methyltransferase [Shewanella baltica OS185]
 gi|160875617|ref|YP_001554933.1| RNA methyltransferase [Shewanella baltica OS195]
 gi|217973134|ref|YP_002357885.1| TrmH family RNA methyltransferase [Shewanella baltica OS223]
 gi|304408987|ref|ZP_07390608.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS183]
 gi|307302990|ref|ZP_07582745.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           BA175]
 gi|151365527|gb|ABS08527.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS185]
 gi|160861139|gb|ABX49673.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS195]
 gi|217498269|gb|ACK46462.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS223]
 gi|304352808|gb|EFM17205.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS183]
 gi|306913350|gb|EFN43772.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           BA175]
 gi|315267805|gb|ADT94658.1| RNA methyltransferase, TrmH family, group 1 [Shewanella baltica
           OS678]
          Length = 242

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 18/161 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        +   +     +   +A +A  +      +++ +L
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPRVEPDGHSIALAAGASDILKHLVKVDSL 66

Query: 196 TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +A+          I  S+             ++   L  E     +A++ G E  GL  
Sbjct: 67  AEAIADCS----LVIATSARSRTLDWPMLEPREAGVRLATEALKGPVAIVFGRENHGLSN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
           +  +  T    +       +LN++ A  +  Y T+  H A+
Sbjct: 123 EELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQ 163


>gi|92115317|ref|YP_575245.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens
           DSM 3043]
 gi|91798407|gb|ABE60546.1| RNA methyltransferase TrmH, group 2 [Chromohalobacter salexigens
           DSM 3043]
          Length = 164

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +        +   L ++     E       ++ 
Sbjct: 4   IVLFEPEIPPNTGNLIRLCANTGFRLHLIEPLGFALDDKRLRRAGLDYHEWARVKVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+ +     + + +S+  +    +    +  AL+ G E +GL     +         
Sbjct: 64  RAFLESVQPA--RVLAVSTRGRTGYHEVAYREGDALVFGPETRGLPQAMLDALPPAQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    ++LN+SNA A+ ++      
Sbjct: 122 IPMLPDSRSLNLSNACAILVFEAWRQL 148


>gi|153840063|ref|ZP_01992730.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ3810]
 gi|260903305|ref|ZP_05911700.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ4037]
 gi|149746359|gb|EDM57408.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ3810]
 gi|308109535|gb|EFO47075.1| RNA methyltransferase, TrmH family, group 2 [Vibrio
           parahaemolyticus AQ4037]
 gi|328472240|gb|EGF43110.1| rRNA methylase [Vibrio parahaemolyticus 10329]
          Length = 159

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R       +  +        E   + ++     +     R  N    L+ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNYQAFLEYLDKE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
               ++    ++ +              L+ G E +GL  +  E         + M    
Sbjct: 74  KQGNYRLFACTTKTTGHHVDAQYQAGDVLMFGPETRGLPAEIIEGLPMEQRIRIPMMPDA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|218884714|ref|YP_002429096.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
 gi|218766330|gb|ACL11729.1| SpoU rRNA methylase [Desulfurococcus kamchatkensis 1221n]
          Length = 234

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 21/163 (12%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL  +  P N+G I R+ V F+ D +   K  + S    L  +A G    +      
Sbjct: 2   LRIVLVGIEGPVNLGVIARTCVNFNVDELYIVKPVA-SIEEALNYAARGKDFLLKARVTD 60

Query: 194 NLTDALQKMHSWGFQTIGLSSD----SKKPLEQEI-----------KNDKIALILGAEGK 238
           +L +A++     G   +  +SD    +   L Q +           +   +A++ G E  
Sbjct: 61  SLDEAIK-----GVDMVAATSDEGYSAGDMLRQAVDLNGFAEKIFPRTRSVAILFGREST 115

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           GL  +    A  +  +       ALN+S A A+ L+      +
Sbjct: 116 GLTREEISKADVLVTIPANPSYPALNISQAVAIVLWELWKQRS 158


>gi|322391473|ref|ZP_08064942.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321145556|gb|EFX40948.1| TrmH family RNA methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 167

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDIYFYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETATSMA 252
            + + KM+    Q   +S  ++K               + G E KGL  K  +E      
Sbjct: 65  DEFMGKMNG---QLYLISKFAEKVYSDADFTTEGNHYFLFGREDKGLPEKFMREHPDKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|269966824|ref|ZP_06180897.1| rRNA methyltransferase [Vibrio alginolyticus 40B]
 gi|269828491|gb|EEZ82752.1| rRNA methyltransferase [Vibrio alginolyticus 40B]
          Length = 159

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--- 202
           N G I+R       +  +        E   + ++     +     R  N    L+ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKNYQAFLEYLEKE 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
               ++    ++ +              L+ G E +GL  +  ++        + M    
Sbjct: 74  RQGNYRLFACTTKTTGHHVDAQYQTGDVLMFGPETRGLPAEIIDSLPMEQRIRIPMMPDA 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SNA A+  +       
Sbjct: 134 RSLNLSNAVAIIAFEAWRQMG 154


>gi|269120218|ref|YP_003308395.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
 gi|268614096|gb|ACZ08464.1| tRNA/rRNA methyltransferase (SpoU) [Sebaldella termitidis ATCC
           33386]
          Length = 153

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 17/154 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-LAKSASGALEHIPYIRISN 194
           +VL +   P+N G I R+ V     G+   K    S     + ++     + +      +
Sbjct: 3   IVLLNPEIPYNTGNIARTCVLTG-TGLHLIKPLGFSLDEKQIRRAGLDYWKDVKLTVWDS 61

Query: 195 LTDALQKMHSWGFQTIGLSSDSK--KPLEQEIKNDKIALILGAEGKGLRPKTQ----ETA 248
           LT+ ++   +  F      +  K   P+ +E       ++ G E +G+  +      E  
Sbjct: 62  LTELMESNKNAKFYFATTKTRQKYTDPVYREDDY----IVFGPESRGVPEEILLENKENC 117

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
                + M    ++LN+SN+AA+ LY    QN F
Sbjct: 118 ---ITIPMLPKGRSLNLSNSAAIILYEALRQNEF 148


>gi|303256290|ref|ZP_07342306.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales
           bacterium 1_1_47]
 gi|330998987|ref|ZP_08322712.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella
           excrementihominis YIT 11859]
 gi|302861019|gb|EFL84094.1| RNA methyltransferase, TrmH family, group 2 [Burkholderiales
           bacterium 1_1_47]
 gi|329575729|gb|EGG57255.1| RNA methyltransferase, TrmH family, group 2 [Parasutterella
           excrementihominis YIT 11859]
          Length = 156

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I+R +    C   +        E   + ++     E+    R  + 
Sbjct: 4   IVLVHPEIPPNTGNIIRLSANTGCKLYLIEPLGFNFEDKHMKRAGLDYWEYADIKRFPSY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
              L+       +   +++ +++ +++         + G+EG GL  + +       M  
Sbjct: 64  EAFLEAEKPDRDRMFAMTTKAQQLVQEVSFKPGDWFVFGSEGSGLPQEVRALFDPAHMVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+ A+ +Y     
Sbjct: 124 LPMRPNNRSLNLSNSVAITVYEAWRQ 149


>gi|257063675|ref|YP_003143347.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens
           DSM 20476]
 gi|256791328|gb|ACV21998.1| predicted rRNA methylase SpoU family [Slackia heliotrinireducens
           DSM 20476]
          Length = 159

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 53/155 (34%), Gaps = 6/155 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              + +VL     P N G + R+         +            L +S     + +  +
Sbjct: 4   KPHIHVVLFEPEIPQNTGNVARTCAVVGATLHLVEPMGFRLTERNLKRSGCDYWDDVDVV 63

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQE- 246
           + +++   L +  +        +S ++         +    + L+ G E +G+       
Sbjct: 64  KHASVEAFLSQHGNDELHLF--TSHTETCYTDVRYGEGGGDVYLVFGRESRGIDEDVLAA 121

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                  + M   +++LN+SNA AV +Y     + 
Sbjct: 122 HVDRCVRIPMRHNMRSLNLSNAVAVGVYEVIRQWG 156


>gi|218459042|ref|ZP_03499133.1| probable RNA methylase protein [Rhizobium etli Kim 5]
          Length = 78

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            GF    LS   K  +       ++AL++G EG+GL           A +     + +LN
Sbjct: 1   RGFAIWTLSPHGKTDIRAIPAAARMALVVGTEGEGLPAALLARF-QSARIPQSDELDSLN 59

Query: 265 VSNAAAVALYITQNHFAK 282
            + A  +AL+   +   +
Sbjct: 60  AATATGIALFSMASAMGR 77


>gi|260770823|ref|ZP_05879752.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|260614060|gb|EEX39250.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio furnissii CIP
           102972]
 gi|315178864|gb|ADT85778.1| Predicted rRNA methylase [Vibrio furnissii NCTC 11218]
          Length = 157

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 3/139 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       +  +        E   + ++     +     R  +    +  + + 
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYQAFIAFLEAR 73

Query: 206 G-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKA 262
           G ++    ++ +              L+ G E +GL     E+        + M    ++
Sbjct: 74  GDYRIFACTTKTTGHHVDAQFQRGDVLLFGPETRGLPADLIESLPMAQRIRIPMMPEARS 133

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SNA A+  +       
Sbjct: 134 LNLSNAVAIIAFEAWRQMG 152


>gi|313471801|sp|C6X9I5|TRML_METSD RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 154

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E   L ++     E+       N 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
                 +   G +   L++            +    + G E +GL  + ++  T      
Sbjct: 64  EACCAAL--AGRRMFALTTKGSARHSTIAFQEGDVFVFGPETRGLPEEIRDQFTPEHRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+AAV LY     
Sbjct: 122 LPMMPNNRSLNLSNSAAVLLYEAWRQ 147


>gi|171915687|ref|ZP_02931157.1| putative RNA methylase [Verrucomicrobium spinosum DSM 4136]
          Length = 158

 Score = 72.8 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     PHN GA+ R  +A      +        +   L ++     + +        
Sbjct: 4   IVLYQPEIPHNTGAVGRLCLATGARLHLIKPLGFSIDDKQLKRAGLDYWKDVDVRVWDRF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            D   +    G     L++ + +         +  L+ G E +GL      E   S   +
Sbjct: 64  EDLQAEAAPSGAPFYYLTTKTTQTYWNATFPAECYLVFGPETRGLPESLLAEQPASCLRI 123

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN++ A  + LY     
Sbjct: 124 PML-DTRSLNLATAVGIVLYEAVRQ 147


>gi|210613769|ref|ZP_03289883.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
 gi|210150978|gb|EEA81986.1| hypothetical protein CLONEX_02090 [Clostridium nexile DSM 1787]
          Length = 164

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            + ++     + +      + 
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKAIKRAGMDYWDDLDVTTYIDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D ++   + G +    ++ +              ++ G E  G+  +           +
Sbjct: 64  QDFME--KNPGAKIYMATTKAPNVYTDVNYEPDCYIMFGKESAGIPEEILIHHKEDSIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M G I++LN+ N+ A+ LY     
Sbjct: 122 PMVGDIRSLNLGNSVAIVLYEALRQ 146


>gi|255065468|ref|ZP_05317323.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC
           29256]
 gi|255050293|gb|EET45757.1| RNA methyltransferase, TrmH family, group 2 [Neisseria sicca ATCC
           29256]
          Length = 154

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 2   FTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFAKLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
           N  D L+ +   G +   L++  K    +    +    + G E +GL  +  +T      
Sbjct: 62  NFEDCLKAL--EGRRIFALTTKGKTRPNEVSFVEGDVFLFGPETRGLPAEILDTLPEGQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  AV L+     
Sbjct: 120 LRLPMKPGSRSMNLSNTVAVILFEAWRQ 147


>gi|15889520|ref|NP_355201.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|15157398|gb|AAK87986.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 161

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 43/129 (33%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR A        I            L ++    +      R  +     +   
Sbjct: 22  PGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYIAAAALTRHVSWDRFEEWRA 81

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           S G + +  S+ +  P           L+ G E  G+     + A     + M    +++
Sbjct: 82  STGRRLVLASTRAALPYTDITYRADDILLFGRESAGVPDHVHDKADERIIIPMVAGQRSI 141

Query: 264 NVSNAAAVA 272
           NV+ +AA+ 
Sbjct: 142 NVAMSAAMV 150


>gi|51245784|ref|YP_065668.1| rRNA methylase homolog (CspR) [Desulfotalea psychrophila LSv54]
 gi|50876821|emb|CAG36661.1| probable rRNA methylase homolog (CspR) [Desulfotalea psychrophila
           LSv54]
          Length = 165

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
              PT+D   +  +++V   +  P N G+I R   A +    +       ++   L ++ 
Sbjct: 4   YRCPTVDYTSHLNIVLVEPEI--PPNTGSIARLCGATNAILHLVHPLGFSTDDKHLRRAG 61

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
               + +  +   +    L +              ++K   +        LI G E KGL
Sbjct: 62  LDYWKFVNIVYWESFEAFLSQCDKDNMYFFTT--KTEKSYTEAKFKQGDFLIFGKETKGL 119

Query: 241 RPKTQE-TATSMAHLHMPG-IIKALNVSNAAAVALYITQNHFAK 282
                +        L MP   I++LN++  A + LY       +
Sbjct: 120 PKPILDLHPDRCLTLPMPNPNIRSLNLAMTAGIVLYEAMRQVGE 163


>gi|209550362|ref|YP_002282279.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536118|gb|ACI56053.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 153

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 48/148 (32%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L + L   + P N G ILR A        +            L +S    +      R
Sbjct: 2   TDLRLALYQPDIPGNTGTILRLAACLGFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALTR 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             N         + G + I  S+ +              L+ G E  G+     E A + 
Sbjct: 62  HVNWDRFEAWRATTGRRLILASTKAADRYTDLAFRSDDILLFGRESAGVPDHVHERADAR 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    +++NV+ +AA+ +      
Sbjct: 122 ILIPMVDGQRSINVAVSAAMIVGEAMRQ 149


>gi|33861419|ref|NP_892980.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633996|emb|CAE19321.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 160

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+I R+  AF     +        E   L ++       +     SN  +      
Sbjct: 11  PQNTGSIARTCAAFDITLNLIEPLGFKLEDKYLKRAGLDYWPLVKLKNYSNFNNFKDSKK 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG----- 258
           +   + I  S  +   L+    ++   L+ G E  GL       + S+  + MP      
Sbjct: 71  NK--RIIAFSKKNGVYLKDFRFHEDDILLFGREDTGLPNNIINASNSLISIFMPKVALSN 128

Query: 259 ----IIKALNVSNAAAVALYITQNHFA 281
                +++LN+S A  +A+Y       
Sbjct: 129 NDPKGVRSLNLSVACGIAIYEAYKQIN 155


>gi|325830711|ref|ZP_08164095.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1]
 gi|325487118|gb|EGC89561.1| RNA methyltransferase, TrmH family, group 2 [Eggerthella sp. HGA1]
          Length = 156

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 3/150 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L +VL     P N G I R+         +            LA++     + +  +
Sbjct: 2   TQSLSIVLVEPEIPQNTGNIARTCACTGARLHLVEPMGFRLTQKNLARAGCDYWDEVDIV 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETAT 249
           R        +   +        +  +++        +   L+ G E +GL     +  A+
Sbjct: 62  RWPCTEAFFEAHAADELHLF--TGQARRGFGDVAYGEGSFLVFGRESRGLPLGLIEAHAS 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   +++LN+SNA AVA Y     
Sbjct: 120 RCVRIPMREGLRSLNLSNAVAVAAYEALRQ 149


>gi|325675573|ref|ZP_08155257.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
 gi|325553544|gb|EGD23222.1| SpoU rRNA methylase [Rhodococcus equi ATCC 33707]
          Length = 181

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R      C+  +            L ++     +        NL  A   + 
Sbjct: 39  PPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVHENLEAAWDALR 98

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    ++ +              L+ G E  GL     E    T+   + M    +
Sbjct: 99  PE--RVFAFTAHASTSYADLAYQPGDVLLFGPEPTGLAQDVLEDPHVTAQVRIPMVPGRR 156

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNAAAV  Y     
Sbjct: 157 SLNLSNAAAVVTYEAWRQ 174


>gi|15965575|ref|NP_385928.1| putative tRNA/rRNA methyltransferase protein [Sinorhizobium
           meliloti 1021]
 gi|307302695|ref|ZP_07582451.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
 gi|307318543|ref|ZP_07597977.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|15074756|emb|CAC46401.1| Putative tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306895883|gb|EFN26635.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
 gi|306903059|gb|EFN33650.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
          Length = 153

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 44/133 (33%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L + L   + P N G ILR A        I            L ++    +  +   R
Sbjct: 2   NDLRIALYQPDIPGNTGTILRLAACLGLSVDIIEPAGFDLSDRNLKRAGMDYIAAVTMTR 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +         S G + +  S+ +  P  +        L+ G E  G+     E A + 
Sbjct: 62  HDSWERFETWRSSTGRRLVLASTKAAAPYTRFSFRPDDVLLFGRESAGVPDHVHERADAR 121

Query: 252 AHLHMPGIIKALN 264
             + M    ++LN
Sbjct: 122 ILIPMAPGQRSLN 134


>gi|326318591|ref|YP_004236263.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323375427|gb|ADX47696.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 158

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  ++ ++     E+    + +  
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMEDKLMKRAGLDYHEYAEVRQHAGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
           T  L+       +   +++     + + +       + GAE +GL P+ ++    A    
Sbjct: 64  TAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDWFVFGAESRGLPPELRDAFPPA-QRL 122

Query: 253 HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
            L M    ++LN+SNA AV +Y    QN FA
Sbjct: 123 RLPMLPGQRSLNLSNAVAVTVYEAWRQNGFA 153


>gi|258620436|ref|ZP_05715474.1| rRNA methyltransferase [Vibrio mimicus VM573]
 gi|258587315|gb|EEW12026.1| rRNA methyltransferase [Vibrio mimicus VM573]
          Length = 158

 Score = 72.4 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFVEYLQRE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
            G F+    ++ + +            L+ G E +GL  +   +        + M    +
Sbjct: 74  RGTFRLFACTTKTTQHHVDAKFQQGDVLMFGPETRGLPAELITSLPTEQRIRIPMMPEAR 133

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA A+  +       
Sbjct: 134 SLNLSNAVAIIAFEAWRQMG 153


>gi|302764152|ref|XP_002965497.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
 gi|302802440|ref|XP_002982974.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
 gi|300149127|gb|EFJ15783.1| hypothetical protein SELMODRAFT_47811 [Selaginella moellendorffii]
 gi|300166311|gb|EFJ32917.1| hypothetical protein SELMODRAFT_67834 [Selaginella moellendorffii]
          Length = 157

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 9/156 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G   R+  A      +        E + L ++     ++I      
Sbjct: 1   LQVVLVSPQIPGNTGTTARTCAAVLAGLHLVKPLGFSIEDSKLKRAGLDYWKYIVVKVHE 60

Query: 194 NLTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
           +    L          + I  +   K             L+ G+E  GL P+  E  ++ 
Sbjct: 61  SWPHFLDYFRQQEGEKRLIAYTKTGKCSYLDMSYKPGDWLVFGSETDGLAPEIHEECSTG 120

Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
                   + M    ++ LN+S +  + +Y      
Sbjct: 121 VHAGGTVRIPMNDAFVRCLNLSVSVGIGVYEALRQL 156


>gi|224370153|ref|YP_002604317.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
 gi|223692870|gb|ACN16153.1| TrmH2 [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 16/161 (9%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++  Q+ +VL     P NIG++ R+ + F    +      +   +    K A  A   +P
Sbjct: 1   MKKQQITVVLVEPQGPLNIGSVCRAMMNFGFSQLCLVNPCTTFNNLDARKMALSA---LP 57

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-------------SDSKKPLEQEIKNDKIALILGA 235
            +  + + D L +         G +              D  + L +E   ++ AL++G 
Sbjct: 58  ILEKAVVVDTLAQALKNCHLAFGTTRRFGKYRQDFLSPEDFGRTLAEEPDTNQCALVMGR 117

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           E  GL     E       +       ++N+S+A A+ LY  
Sbjct: 118 EDHGLYTSELELCQRFVTIPTENAYGSMNLSHATALLLYQA 158


>gi|82702256|ref|YP_411822.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
 gi|82410321|gb|ABB74430.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
           25196]
          Length = 153

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R          +        E  +L ++     E       ++ 
Sbjct: 4   VILYQPEIPPNTGNIIRLCANTGIRLHLVKPLGFTLEDKLLLRAGLDYHEFASITVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
            + + ++     +   +S+  K+  +    +   A + G E +GL     E         
Sbjct: 64  VECMDELGDRDRRFFAISTKGKQRYDLVTYSPGDAFLFGPESRGLPTDLLENFPEQHRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SNA AV +Y     
Sbjct: 124 VPMAAGSRSLNLSNAVAVIVYEAWRQ 149


>gi|418440|sp|P32813|TRML_BACST RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase in gldA
           3'region; AltName: Full=ORF3
 gi|142979|gb|AAA22478.1| ORF3 is homologous to an ORF downstream of the spoT gene of E.coli;
           ORF3 [Geobacillus stearothermophilus]
          Length = 157

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++  +L ++     E +      +L
Sbjct: 5   VVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ-ETATSM 251
               Q+  +  F    ++   K+       +D    I  I G E  GL  +   E     
Sbjct: 65  DHFFQQNQNGDF--YYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENEDRC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   ++ALN+SN AA+ +Y     
Sbjct: 123 LRIPMTENVRALNLSNTAAILVYEALRQ 150


>gi|253998269|ref|YP_003050332.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253984948|gb|ACT49805.1| RNA methyltransferase, TrmH family, group 2 [Methylovorus sp.
           SIP3-4]
          Length = 164

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E   L ++     E+       N 
Sbjct: 14  IVLYQPEIPPNTGNIIRLCANTGTRLHLVKPLGFSLEDKQLKRAGLDYHEYANMQVHENW 73

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
                 +   G +   L++            +    + G E +GL  + ++  T      
Sbjct: 74  EACCAAL--AGRRMFALTTKGSARHSTIAFQEGDVFVFGPETRGLPEEIRDQFTPEHRVR 131

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+AAV LY     
Sbjct: 132 LPMMPNNRSLNLSNSAAVLLYEAWRQ 157


>gi|254785253|ref|YP_003072681.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
           turnerae T7901]
 gi|237684509|gb|ACR11773.1| RNA methyltransferase, TrmH family, group 2 [Teredinibacter
           turnerae T7901]
          Length = 155

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        N 
Sbjct: 4   VVLYQPEIPPNTGNIIRLCANTGCQLHLVKPLGFVLDDKRLRRAGLDYSEWQNLKIHENW 63

Query: 196 TDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
                   +     +   G ++ S+             L+ G E +GL    +E+     
Sbjct: 64  QSLRDAAGTATIWALSTKGTATHSEARFSAGDY-----LVFGPETRGLPADIRESLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  + M    +++N+SNAAAV +Y       
Sbjct: 119 VLRIPMQAQSRSMNLSNAAAVMVYEAWRQLG 149


>gi|41409572|ref|NP_962408.1| hypothetical protein MAP3474 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398403|gb|AAS06024.1| SpoU [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 154

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+A A  C+  +            L ++     +       ++L  A   +   
Sbjct: 14  NTGNAIRTAAATGCELHLVEPIGFDLSEPKLRRAGLDYHDLASVTVHASLAAAWDALTPA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             + +  +S +     +        L+ G E  GL   T      T+   + M    ++L
Sbjct: 74  --RVVAFTSHAPASFAELRYRPGDVLMFGPEPTGLDAATLADPHVTTQVRIPMLAGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAA+A+Y     
Sbjct: 132 NLSNAAAIAVYEAWRQ 147


>gi|15828774|ref|NP_326134.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
 gi|14089717|emb|CAC13476.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
          Length = 174

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 7/152 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISN 194
           +VL     P N G I+R+  A S    I            L +SA+G L   I +    +
Sbjct: 4   IVLYQPEIPPNTGNIIRTCFATSSKLHIIKPIAFDLNPRFLKRSAAGHLLSEIQHEVHDS 63

Query: 195 LTDALQKMH-SWGFQTIGLSSDSKKPLE--QEIKNDK--IALILGAEGKGLRPKTQ-ETA 248
             D L K      F     S  S   ++   E  + K  I  + G E  G+  K   +  
Sbjct: 64  YNDFLAKYQNENIFYITRYSQKSYSDIDFKLETFDGKKDIFFVFGTESTGIPKKILSQNI 123

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M    ++LN++N+  V +Y      
Sbjct: 124 DKTLRIPMAPENRSLNLANSVVVIIYECLRQL 155


>gi|187251770|ref|YP_001876252.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
 gi|186971930|gb|ACC98915.1| tRNA/rRNA methyltransferase [Elusimicrobium minutum Pei191]
          Length = 225

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 15/155 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI- 192
           + ++L    +P+NIGA  R+   F    +     + P+     A++A GA + +   +I 
Sbjct: 2   ITIILVKPRNPNNIGASARAMANFGLSDLRIAGAHIPNLEE--AQAAVGAEDLLKKAKIF 59

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKP---------LEQEIKNDKIALILGAEGKGLRPK 243
            NL DAL       F     S  ++           +   IK  KIA++ G+E  GL  K
Sbjct: 60  DNLQDALA---DCNFAFAATSLKNRNTQKEIVSLPNINNHIKRGKIAVVFGSEKTGLSVK 116

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             E   ++ ++       ++N++ A  +  Y T  
Sbjct: 117 DIELCDAVLNIPTTTKQPSVNLAQAVNLVCYETAK 151


>gi|294669719|ref|ZP_06734785.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308285|gb|EFE49528.1| hypothetical protein NEIELOOT_01619 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 154

 Score = 72.4 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +S+ + ++     E        
Sbjct: 2   FTVVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSSKMKRAGLDYHEFASLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           N  D L  +   G +   L++      +Q         + G E +GL  +  ++  A   
Sbjct: 62  NFADCLSAL--SGRRIFALTTKGSTRPDQVSFRPGDVFLFGPETRGLPAEILDSLPAGQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             L M    +++N+SN  AV ++    QN F+
Sbjct: 120 IRLPMKAGSRSMNLSNTVAVVVFEAWRQNGFS 151


>gi|220905403|ref|YP_002480715.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869702|gb|ACL50037.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 160

 Score = 72.4 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R   A      +        E   L ++      ++        
Sbjct: 3   IVLYEPEIPPNTGNVARLCAATGVTLNLIEPLGFKLEDRYLKRAGLDYWPNVRLQVWPCW 62

Query: 196 TDALQKMHSWG-----FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +D  ++  + G       T   S+    P+     +    L+ G E +GL  +  E +  
Sbjct: 63  SDFTREALADGRAGRLVFTSAKSAGGSVPVHHFAFDPDDFLVFGPETRGLPQEILELSPH 122

Query: 251 MAHLHMP-GIIKALNVSNAAAVALYIT 276
              + M  G ++++N+S AA + LY  
Sbjct: 123 RVRIPMLEGRVRSINLSTAAGIVLYAA 149


>gi|312897975|ref|ZP_07757384.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
           micronuciformis F0359]
 gi|310620900|gb|EFQ04451.1| RNA methyltransferase, TrmH family, group 2 [Megasphaera
           micronuciformis F0359]
          Length = 160

 Score = 72.4 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+     P N G + R   A      +        E   L ++     + +      N 
Sbjct: 3   VVMVEPEIPGNTGNVSRLCAANHITLHLVKPLGFSLEDKYLKRAGLDYWDLLDLHVHENF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +  Q+  +  +    L++ S K     +  +   L+ G E KGL     +  A     +
Sbjct: 63  EEVQQQYPNSRY--FYLTTKSDKSYTDIVFREDDMLVFGKETKGLPEDLLKRNADYCFRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M    ++LN+SNA A+  Y       
Sbjct: 121 PMIDKARSLNLSNAVAIVSYEALRQLG 147


>gi|54298499|ref|YP_124868.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris]
 gi|53752284|emb|CAH13716.1| hypothetical protein lpp2563 [Legionella pneumophila str. Paris]
          Length = 149

 Score = 72.4 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 3/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   + ++     +    +   N    LQ   
Sbjct: 12  PPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYENWQTFLQSHS 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               +    S+  K             L+ G E  GL  +      S   + M    ++L
Sbjct: 72  QR--RLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTIRIPMRENNRSL 128

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+ LY       
Sbjct: 129 NLSNAVAIILYEAWRQMG 146


>gi|298492564|ref|YP_003722741.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298234482|gb|ADI65618.1| RNA methyltransferase, TrmH family, group 1 ['Nostoc azollae' 0708]
          Length = 245

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 21/164 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +VL     P N+G+I R    F  D ++         S    K A  A E +   +    
Sbjct: 8   IVLVEPAGPLNLGSIARVMKNFGLDNLVLVNPQCDHLSFDALKMAVHAKEILESAVIFPT 67

Query: 195 LTDALQKMHSWGFQTIGL------------SSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           L +ALQ       + I              S  +  P   E     +ALI G E +GL  
Sbjct: 68  LPEALQGC----VRVIATIGRDYSGHIPLESPRTSLPWLLEETEKPVALIFGREDRGLSN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN----HFAK 282
           +    A  +  +       +LN++ A ++  Y          AK
Sbjct: 124 EELNYAHKLIFIPTNPQYPSLNLATAVSICCYELSQYELSQLAK 167


>gi|312140792|ref|YP_004008128.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
 gi|311890131|emb|CBH49449.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
          Length = 150

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R      C+  +            L ++     +        NL  A   + 
Sbjct: 8   PPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLRRAGLDYHDLASVTVHENLEAAWDALR 67

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    ++ +              L+ G E  GL     E    T+   + M    +
Sbjct: 68  PE--RVFAFTAHASTSYADLAYQPGDVLLFGPEPTGLAQDVLEDPHVTAQVRIPMVPGRR 125

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNAAAV  Y     
Sbjct: 126 SLNLSNAAAVVTYEAWRQ 143


>gi|195978738|ref|YP_002123982.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195975443|gb|ACG62969.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 199

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +NS+  +VL     P N G I R+  A +    I      P +   + ++     + +  
Sbjct: 30  KNSRNHVVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDI 89

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPK-TQE 246
               +L + L +        I  S  + +    +  ND+ +   + G E  GL     ++
Sbjct: 90  RFYDHLDEFLAQCDGS-LHVI--SKFADQVYSDKDYNDRQSHYFLFGREDTGLPELFMRQ 146

Query: 247 TATSMAHLHMP-GIIKALNVSNAAAVAL--YITQNHFA 281
            A     + M    +++LNVSNA  V +  Y      A
Sbjct: 147 YADRALRIPMNDEHVRSLNVSNA--VCMIVYEALRQQA 182


>gi|257869740|ref|ZP_05649393.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
 gi|257803904|gb|EEV32726.1| RNA methyltransferase TrmH [Enterococcus gallinarum EG2]
          Length = 167

 Score = 72.0 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      +L
Sbjct: 4   IVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKHLKRAGLDYWHDVHITYHKDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPK-TQETATSM 251
              +  +         +S  + +   +       D+   + G E  GL     +E A   
Sbjct: 64  AAFMSFLGDR--PLYLISKFANRVYSEVDYTTHEDQF-FLFGKETTGLPETFMREHADKC 120

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 121 LRIPMNDAHVRSLNLSNTAALIIYEALRQ 149


>gi|52842704|ref|YP_096503.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629815|gb|AAU28556.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 174

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + N  + + L     P N G I+R          +        E   + ++     +   
Sbjct: 22  LENHMIHIALYQPEIPPNTGNIIRLCANTGAQLHLIHPLGFTLEDKQMRRAGLDYHQWAS 81

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   N    LQ       +    S+  K             L+ G E  GL  +     
Sbjct: 82  ILHYENWQTFLQSHSQR--RLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ- 138

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            S   + M    ++LN+SNA A+ LY      
Sbjct: 139 YSTIRIPMRENNRSLNLSNAVAIILYEAWRQM 170


>gi|88705266|ref|ZP_01102977.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71]
 gi|88700356|gb|EAQ97464.1| tRNA/rRNA methyltransferase (SpoU) [Congregibacter litoralis KT71]
          Length = 154

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N G I+R     SC   +        E   L ++     E        +L
Sbjct: 4   VALYEPEIPPNTGNIMRLCANTSCPLHLIKPLGFSLEDKQLRRAGLDYREFAHVQTHDSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              +Q +H     T  LS+   +            L+ G E +GL     +         
Sbjct: 64  DALIQTLHRPRIWT--LSTRGTRNYTDADFQKGDVLLFGPETRGLPATVLDELGVHRCLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SNAAA+ LY     
Sbjct: 122 VPMYPDSRSLNLSNAAALVLYEGLRQ 147


>gi|300112981|ref|YP_003759556.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299538918|gb|ADJ27235.1| RNA methyltransferase, TrmH family, group 2 [Nitrosococcus watsonii
           C-113]
          Length = 161

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R          +        +   L ++     E        +L
Sbjct: 4   VILLEPEIPPNTGNIIRLCANTGAMLHLVQPLGFELDDRRLRRAGLDYHEWAKVKVHPSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L +      Q    S+  +   ++       AL+ G E +GL  +         +  
Sbjct: 64  EHFLVQTQPR--QLWACSTRGRHSYDKANFRPGDALLFGPETRGLPRELLGILPPQQVLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SNA AV LY     
Sbjct: 122 IPMEPTSRSLNLSNAVAVVLYEAWRQ 147


>gi|224476913|ref|YP_002634519.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421520|emb|CAL28334.1| putative rRNA methylase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 156

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     EH+      N+
Sbjct: 5   VVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYYENI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
                +     +      S +    +     +    + G E  GL    +E    +   +
Sbjct: 65  EQFFDQTDGHYYLITKFGSTTFTDFDYSNPEEDHYFVFGRETTGLPDWVKEKYHDTALRI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+SN AA+ +Y     
Sbjct: 125 PMNDHIRSLNLSNTAAILVYEALRQ 149


>gi|296133845|ref|YP_003641092.1| RNA methyltransferase, TrmH family, group 2 [Thermincola sp. JR]
 gi|296032423|gb|ADG83191.1| RNA methyltransferase, TrmH family, group 2 [Thermincola potens JR]
          Length = 152

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 11/149 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +VL     P N G I R+         ++    +S  +   L ++       +      N
Sbjct: 3   IVLVEPEIPANTGNIARTCAVTGSVLHLVKPLGFSV-DDKHLKRAGLDYWHLLDIRYYEN 61

Query: 195 LTDALQKMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATS 250
             +   K  +  F  +        +  P   +       L+ G E  GL  +  E  A  
Sbjct: 62  FQELKAKYPASRFYYVTTKGKKFYTDVPYSADDF-----LVFGKETAGLPKELLEENAEF 116

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   +++LN+SN+ A+ LY     
Sbjct: 117 CIRIPMINNVRSLNLSNSVAIVLYEAWRQ 145


>gi|167036092|ref|YP_001671323.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166862580|gb|ABZ00988.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
           GB-1]
          Length = 153

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCHLHLIEPISFELDDKRLRRAGLDYHEYATLKRHESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ + +   +    ++    P  +       A + G E +GL  +  ++  A     
Sbjct: 64  AGCLESLGNP--RLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV +Y    QN FA
Sbjct: 122 LPMRPGCRSLNLSNTVAVTVYEAWRQNGFA 151


>gi|241661853|ref|YP_002980213.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|240863880|gb|ACS61541.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
           12D]
          Length = 156

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A + ++     E+      ++ 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              L+       +   L++    P            + G+E +GL  + +E   AT    
Sbjct: 64  DAFLRDAQPDPARMFALTTRGSTPFASMAFQPGDWFVFGSETRGLSEERREWFPATQRIR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV ++    QN FA
Sbjct: 124 LPMRPDNRSLNLSNTVAVVVFEAWRQNGFA 153


>gi|268608521|ref|ZP_06142248.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1]
          Length = 165

 Score = 72.0 bits (176), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 50/148 (33%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +            L ++     + +      +L
Sbjct: 6   IVLVEPQIPQNTGNISRTCAVTGARLHLVRPLGFEVSDKHLKRAGLDYWDKLDITYYDDL 65

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
           +D   K     F    T GL   S              LI G E KGL      +     
Sbjct: 66  SDFFDKNKDGHFYYFTTKGLHVHSDIDYPDNSY-----LIFGREDKGLPESLLHDNPGFC 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
           A + M   +++LN+SN+ A+A+Y     
Sbjct: 121 ARIPMRNELRSLNLSNSVAIAVYEVLRQ 148


>gi|313893147|ref|ZP_07826724.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442500|gb|EFR60915.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 161

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +  +K     +     +  +K    +        L+ G E +GL     E    +   +
Sbjct: 63  EELYEKYPDRRYF-YATT-KAKHTHSEVNYEIGDMLVFGPESRGLPESLLEGKEDTCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SNA A+  Y      
Sbjct: 121 PMVDEARSLNLSNAVAIIAYEGMRQL 146


>gi|254451585|ref|ZP_05065022.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238]
 gi|198265991|gb|EDY90261.1| SpoU rRNA Methylase family [Octadecabacter antarcticus 238]
          Length = 152

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 6/149 (4%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L++V   +  P+N GAI R+ VA   + I+        +   + ++     +H+     
Sbjct: 2   KLVLVTPEI--PYNTGAIGRTCVALELELILIRPYGFSLDEKAVRRAGQDYWKHVQLSEY 59

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +  D +                  + +          L+ G E KGL     +      
Sbjct: 60  DSWQDFMDDRKPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPATVLDGMDDRV 119

Query: 253 -HLHMPGI-IKALNVS-NAAAVALYITQN 278
            HL M    +++LN++  A AV  Y    
Sbjct: 120 FHLPMRNPLVRSLNLANVATAVI-YQAMR 147


>gi|111023195|ref|YP_706167.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110822725|gb|ABG98009.1| tRNA/rRNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 151

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R      C+  +            L ++     +        NL  A   + 
Sbjct: 8   PPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHENLEAAWAALE 67

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    ++ +              L+ G E  GL  +       T    + M    +
Sbjct: 68  PA--RVYAFTAHATVSYADIAYQPGDVLLFGPEPTGLSEEVLADPHVTERLRIPMLPGRR 125

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNAAA+  Y     
Sbjct: 126 SLNLSNAAALVTYEAWRQ 143


>gi|115699928|ref|XP_782457.2| PREDICTED: similar to TAR RNA loop binding protein
            [Strongylocentrotus purpuratus]
 gi|115978414|ref|XP_001188472.1| PREDICTED: similar to TAR RNA loop binding protein
            [Strongylocentrotus purpuratus]
          Length = 1252

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 190  IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            ++ S+L D + +M   G+  +G+   +  + L       +  L+LG E +G+  +  +  
Sbjct: 1155 VKPSDLKDYMIEMKKHGYTLVGVEQTANSQSLTDFKFPQRTMLLLGKEREGIPVELIQFL 1214

Query: 249  TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   G I++LNV  + A+ ++     
Sbjct: 1215 DVCVEIPQLGFIRSLNVHVSGALMIWEYTRQ 1245


>gi|307823279|ref|ZP_07653509.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
           tundripaludum SV96]
 gi|307736054|gb|EFO06901.1| RNA methyltransferase, TrmH family, group 2 [Methylobacter
           tundripaludum SV96]
          Length = 158

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E +      +L
Sbjct: 4   IVLYEPEIPANTGNIIRLCANTGMQLHLIKPLGFELDDKKLRRAGLDYHEWVAVKEHDSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            D +  +     +   L++   +   +     + A + G E +GL         +    +
Sbjct: 64  ADFVDSIK--PGRIFALTTKGTQIYSEVSFQPEDAFLFGPETRGLPATVLADLGSERCLY 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           L M    ++LN+SN  ++ LY      
Sbjct: 122 LPMQAESRSLNLSNTVSIVLYEAWRQM 148


>gi|308807789|ref|XP_003081205.1| unnamed protein product [Ostreococcus tauri]
 gi|116059667|emb|CAL55374.1| unnamed protein product [Ostreococcus tauri]
          Length = 308

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           + +N+G + R++            R    ES+  A +      HIP     +  D  ++ 
Sbjct: 147 NENNLGTLWRTSYQLGAAYAFVVGRRFKKESSDTANTHQ----HIPMYTYEDWNDF-RRN 201

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             +G   + +    + PLE          +LG+E  GL             L       +
Sbjct: 202 TPYGAVLVAVEMGGE-PLETFEHPKNCVYVLGSEDTGLNTSMLRACRHHVALPATRTA-S 259

Query: 263 LNVSNAAAVALYIT 276
            NV+   A+ +Y  
Sbjct: 260 YNVAVTGAILMYDR 273


>gi|309776934|ref|ZP_07671904.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915345|gb|EFP61115.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 169

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 28/160 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R+ +A +    +        +   L ++    ++ + Y    N 
Sbjct: 4   LVLYEPEIPQNTGNMMRTCMATNTRLHLIKPLGFSLDEQHLKRAGMDYVKELDYTVYENW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--------------LILGAEGKGLR 241
            D               S           +  K A               ILG E  G+ 
Sbjct: 64  EDF-------------TSQHPSDNYYYMTRYGKKAPSQFDFTTCKGDIYFILGKESTGIP 110

Query: 242 PKTQ-ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +           L M    ++LN+SN AA+ LY      
Sbjct: 111 KELLSRQLDRCMRLPMVANARSLNLSNCAAIILYEALRQL 150


>gi|306830150|ref|ZP_07463334.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
 gi|304427676|gb|EFM30772.1| TrmH family RNA methyltransferase [Streptococcus mitis ATCC 6249]
          Length = 167

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 21/158 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDNL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA------LILGAEGKGLRPK-TQETA 248
            D L +M     Q   +S  ++K   +      +A       + G E KGL     +E  
Sbjct: 65  ADFLSQMKG---QVYLISKFAEKVYSEAN----LASGEDQYFLFGREDKGLPEDFMREHP 117

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
                + M    +++LNVSN   V +  Y    Q HFA
Sbjct: 118 EKALRIPMNDEHVRSLNVSNT--VCMIVYEALRQQHFA 153


>gi|295099743|emb|CBK88832.1| Predicted rRNA methylase (SpoU class) [Eubacterium cylindroides
           T2-87]
          Length = 173

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ +A      +        +   L +S    ++        N 
Sbjct: 4   VVLYEPEIPQNTGNIIRTCMATGSRLHLIEPLGFSLDEKHLRRSGMDYIKDADIHIHKNW 63

Query: 196 TDALQKM---HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
            + +++      +     G    +    +    +  + L+LG E  G+  K  +    S 
Sbjct: 64  EEFVKENPSDKYYFMTRYG--HKAPSEFDFSDTSKDVYLVLGKESTGVDKKILKDHLDSC 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    ++LN+SN AA+ +Y     
Sbjct: 122 MRLPMVASARSLNLSNCAAIIVYEVLRQ 149


>gi|212634526|ref|YP_002311051.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
 gi|212556010|gb|ACJ28464.1| RNA methyltransferase TrmH, group 1 [Shewanella piezotolerans WP3]
          Length = 254

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 20/162 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL   + P NIG+  R+        +   +     +   +A  A+GA + + + + + +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSSLYLAEPKVAPDGHSVA-LAAGASDILKHAVTVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           + +A+          I  S+ S+                 +      +A++ G E  GL 
Sbjct: 66  VEEAIADCS----LVIATSARSRTLDWPMLEPREAGEKLVESALTGPVAIVFGRENNGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
            +  +       +       +LN++ A  +  Y  +  H A+
Sbjct: 122 NEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQ 163


>gi|199599122|ref|ZP_03212527.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus
           HN001]
 gi|199590015|gb|EDY98116.1| Predicted rRNA methylase (SpoU class) [Lactobacillus rhamnosus
           HN001]
          Length = 169

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 7/144 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +  I   +L D +  + 
Sbjct: 13  PANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWAKVRIIYHDSLDDFMATVK 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPK-TQETATSMAHLHMPGI 259
                   ++  + +        D  A    + G E  GL     +E       + M   
Sbjct: 73  DPQ-HLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGFMREHEDQCLRIPMTAN 131

Query: 260 IKALNVSNAAAVALYI--TQNHFA 281
           ++ALN+SN AA+ +Y    Q HFA
Sbjct: 132 VRALNLSNCAALVVYEALRQQHFA 155


>gi|229551723|ref|ZP_04440448.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258507873|ref|YP_003170624.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|258539119|ref|YP_003173618.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus
           Lc 705]
 gi|229314928|gb|EEN80901.1| SpoU family RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257147800|emb|CAR86773.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           rhamnosus GG]
 gi|257150795|emb|CAR89767.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           rhamnosus Lc 705]
 gi|259649200|dbj|BAI41362.1| putative rRNA methyltransferase [Lactobacillus rhamnosus GG]
          Length = 169

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 7/144 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +  +   +L D +  + 
Sbjct: 13  PANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWAKVRIVYHDSLDDFMATVK 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPK-TQETATSMAHLHMPGI 259
                   ++  + +        D  A    + G E  GL     +E       + M   
Sbjct: 73  DPQ-HLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGFMREHEDQCLRIPMTAN 131

Query: 260 IKALNVSNAAAVALYI--TQNHFA 281
           ++ALN+SN AA+ +Y    Q HFA
Sbjct: 132 VRALNLSNCAALVVYEALRQQHFA 155


>gi|284044449|ref|YP_003394789.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
 gi|283948670|gb|ADB51414.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
          Length = 261

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 25/256 (9%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVPPQ 99
           S PE + L G H +  AL   +       +  + L    A L  D        V+ V   
Sbjct: 8   SAPEPVVLDGFHALKHALRFGATVERAATSDPDGLDALAAELAPDLRTRLRELVEVVDAA 67

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDAVR----NSQLLMVLDHVNDPHNIGAILRSAV 155
            +  +  +    + +AL   P L P          + + L++L+      N+GA++R A 
Sbjct: 68  ELRTLAPQLPHTRVVALARRPPLDPVALLAPPRDGDPRPLVLLEDPRHLGNVGAVVRVAA 127

Query: 156 AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH------------ 203
           A    G++TT            + A+G    +P  R+  L D +                
Sbjct: 128 AADAAGVLTTGAR-DPWDRAAVRGAAGLHFALPVGRVE-LEDVVGAAAAGALAGGSTPGG 185

Query: 204 --SWGFQTIGLSSDSKKPLEQEIKNDKIALI-LGAEGKGLRPKTQETATSMAHLHMPGII 260
             + G   + L    +       +    A++  G E  GL       A     + M   +
Sbjct: 186 GVAPGRPLVALDPAGEPLRAAAGQLPPGAILAFGTERHGLSDALLTCAELRLRIEMRAGV 245

Query: 261 KALNVSNAAAVALYIT 276
            +LN++ A +  L+ T
Sbjct: 246 SSLNLATAVSAVLFST 261


>gi|116253233|ref|YP_769071.1| aminotransferase/methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257881|emb|CAK08979.1| putative aminotransferase/methyltransferase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 153

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L + L   + P N G ILR A        +            L ++    +      R
Sbjct: 2   TSLRLALYQPDIPGNTGTILRLAACLGFAVDLIEPAGFDISDRNLKRAGMDYIAAAALTR 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +         + G + I  S+ + +            L+ G E  G+  +  ETA + 
Sbjct: 62  HVSWDRFEAWRLTTGRRLILASTKAAERYTDLSFRPDDVLLFGRESAGVPDQVHETADAR 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    +++NV+ +AA+ +      
Sbjct: 122 VLIPMVEGQRSINVAVSAAMIVGEAMRQ 149


>gi|126642729|ref|YP_001085713.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 129

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALI 232
             L ++     E        N+   L  + + G      L++           N  +AL+
Sbjct: 14  KKLKRAGLDYHEWARMQIWDNIELCLADLKAKGVEHVFPLTTKGSATPHTVDLNRPVALL 73

Query: 233 LGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +G E +GL    +          L M    ++LN+SNA AV +Y     
Sbjct: 74  MGPETRGLPEHVRLMFPQEQWIRLPMAENSRSLNLSNATAVIVYEAWRQ 122


>gi|118466307|ref|YP_883469.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           avium 104]
 gi|254776762|ref|ZP_05218278.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|118167594|gb|ABK68491.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           avium 104]
          Length = 154

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+A A  C+  +            L ++     +       ++L  A   +   
Sbjct: 14  NTGNAIRTAAATGCELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVHASLAAAWDALTPA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             + +  +S +     +        L+ G E  GL   T      T+   + M    ++L
Sbjct: 74  --RVVAFTSHAPASFAELRYRPGDVLMFGPEPTGLDAATLADPHVTTQVRIPMLAGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAA+A+Y     
Sbjct: 132 NLSNAAAIAVYEAWRQ 147


>gi|94987568|ref|YP_595501.1| RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731817|emb|CAJ55180.1| RNA methyltransferase, TrmH family, group 2, putative [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 153

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 1/141 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I R   A      +        E   L ++     +H+       L
Sbjct: 3   ILLYQPEIPPNTGNIARLCAATHTPLHLIEPLGFKLEDRYLKRAGLDYWKHVILKVWPQL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L      G + +  S+     + Q + +    L+ G E  GL     +       + 
Sbjct: 63  DDYL-LSDGLGRRLVITSARGGVAVHQFMFSADDTLVFGRETAGLPKDLMDQYEHKVRIP 121

Query: 256 MPGIIKALNVSNAAAVALYIT 276
           +   +++LN+S AA + LY  
Sbjct: 122 IYSTVRSLNLSTAAGIILYQA 142


>gi|317128071|ref|YP_004094353.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473019|gb|ADU29622.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           cellulosilyticus DSM 2522]
          Length = 157

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 14/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++      ++      N+
Sbjct: 5   VVLHEPEIPANTGNIARTCAGTNASLHLIHPLGFSTDDRMLKRAGCDYWPNVHVEHYDNI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKT----QETA 248
                +     F  I  S   +K       +D       I G E KGL        +E  
Sbjct: 65  EQLFARFPEGEFFLIETS--GEKYYHDFDYSDLEKDYFFIFGKETKGLPQDLIDKYKERC 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
                +     I++LN+SN AA+ +Y    Q  F
Sbjct: 123 ---FRIPQTDKIRSLNLSNTAAILVYEALRQQQF 153


>gi|254445462|ref|ZP_05058938.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259770|gb|EDY84078.1| RNA methyltransferase, TrmH family [Verrucomicrobiae bacterium
           DG1235]
          Length = 154

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 49/153 (32%), Gaps = 14/153 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +        +   L +S     + +      + 
Sbjct: 4   VVLFQPEIPQNTGNIGRTCAITESRLHLIHPLGFVIKDKHLKRSGMDYWKSLDVHHHESW 63

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKG----LRPKTQETA 248
               +   +      +    ++ S +P       +   L+ G EG G    L  +  E  
Sbjct: 64  ----EAFKASDVGPKRLFLFTTKSSQPYWDVQYEEGDGLLFGNEGHGAPDWLHDEVGE-- 117

Query: 249 TSMAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
               ++      +++LN++ AA VA +      
Sbjct: 118 DRRLNIPQYNSSLRSLNLATAAGVATFEVMRQL 150


>gi|90020777|ref|YP_526604.1| putative tRNA/rRNA methyltransferase [Saccharophagus degradans
           2-40]
 gi|89950377|gb|ABD80392.1| RNA methyltransferase TrmH, group 2 [Saccharophagus degradans 2-40]
          Length = 177

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 4/166 (2%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            + L +      R +   +VL     P N G I+R      C   +        +   L 
Sbjct: 9   RSALQAAKPQQNRLNMFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLR 68

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           ++     E    +  +N    ++       +   LS+   K   +    +   L+ G E 
Sbjct: 69  RAGLDYGEWQSVVTHANWDAFIK--QQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPET 126

Query: 238 KGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +GL  +  E  T  ++  + M    +++N+SNAA+V +Y       
Sbjct: 127 RGLPMEILEYITFDNVLRIPMLPNSRSMNLSNAASVMVYEAWRQLG 172


>gi|264680077|ref|YP_003279986.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           CNB-2]
 gi|262210592|gb|ACY34690.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           CNB-2]
          Length = 164

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E   + ++     E+    R ++ 
Sbjct: 4   IVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   +++ S  P           L+ G+E KGL P+ +          
Sbjct: 64  DAFLETCQPQRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPNEQRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 124 LPMLASQRSLNLSNAVAVTVFEAWRQ 149


>gi|134098676|ref|YP_001104337.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003638|ref|ZP_06561611.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911299|emb|CAM01412.1| tRNA/rRNA methyltransferase (SpoU) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 152

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 5/138 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A        +        + A L ++     +        +L  A   + 
Sbjct: 12  PGNTGNAIRMAAGSGAALHLIEPLGFSVDDAKLRRAGLDYHDRAALHVHPDLDAAWTALR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM--AHLHMPGIIK 261
               +    SS + +  E         L+ G E  GL P+  E A  +    + M    +
Sbjct: 72  PD--RVFAFSSSATRSYETVSYRPGDVLMFGPESVGLPPELLE-ADYVTPLRIPMLPGNR 128

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++N+AA+A+Y     
Sbjct: 129 SLNLANSAAIAVYEAWRQ 146


>gi|291166114|gb|EFE28160.1| RNA methyltransferase, TrmH family, group 2 [Filifactor alocis ATCC
           35896]
          Length = 156

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+         +        E   L ++    L+ +      + 
Sbjct: 5   IVLIEPEIPSNTGNIIRTCACTGSRLHLIRPLGFSMEEKKLRRAGLDYLDLVEICYYDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +  +K  +  F        S +        D+  L+ G E KG+     +  A  M  +
Sbjct: 65  EELEEKYPNAEFFMYST--KSNRNHTDVRYEDECFLVFGKETKGISDSILDRYADCMVRI 122

Query: 255 HMPG--IIKALNVSNAAAVALYITQNHFA 281
            M     ++ LN+SN+ A+ +Y       
Sbjct: 123 PMLNEERMRCLNLSNSVAIGIYEVIRQLG 151


>gi|170766721|ref|ZP_02901174.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
           TW07627]
 gi|170124159|gb|EDS93090.1| RNA methyltransferase, TrmH family, group 2 [Escherichia albertii
           TW07627]
          Length = 157

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTTVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           +  L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  SAFLEAENPQRLFALTTKGTPAHSAVSYQDSDY-----LMFGPETRGLPATILDALPADQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|332702162|ref|ZP_08422250.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552311|gb|EGJ49355.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 256

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 13/158 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P NIG   R+     C  ++     +      L  + + A   +  +R++
Sbjct: 5   LRVVLVRTKYPENIGMAARACANMGCSDLVLVDPLNLDLDKALPLATAHARHILESVRVT 64

Query: 194 N-LTDALQKMHSWGFQTIGLSSDSKKPL-----------EQEIKNDKIALILGAEGKGLR 241
           + L  AL   H   F T   +   +K L            + +K  ++AL+ G+E KGL 
Sbjct: 65  HGLAAALADAHV-VFGTTARTGGWRKSLVPPVEAGRMAAAELVKGKRVALVFGSEDKGLE 123

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  +    +  +     + +LN++ A  V LY     
Sbjct: 124 NEEIQMCGQLVTIPTAREMSSLNLAQAVLVLLYECFRQ 161


>gi|217979899|ref|YP_002364046.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
 gi|217505275|gb|ACK52684.1| tRNA/rRNA methyltransferase (SpoU) [Methylocella silvestris BL2]
          Length = 169

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 46/132 (34%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L + L   + P N G ILR          I      P       ++    L+H+   R 
Sbjct: 8   DLTVALYQPDIPQNAGTILRMCACLGLRAAIIEPAGFPVSDRHFRRAGMDYLDHVAIERH 67

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +         + G + + LS+ +  P           L+LG E  G   +   +A +  
Sbjct: 68  VSFAAFDAARRAEGARLVLLSTKAALPYADFAFRAGDILLLGRESAGAPDEVHRSADARI 127

Query: 253 HLHMPGIIKALN 264
            + +   +++LN
Sbjct: 128 IIPLADGMRSLN 139


>gi|319424788|gb|ADV52862.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           putrefaciens 200]
          Length = 154

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +     R  +    L+ M   
Sbjct: 14  NTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKDFDAFLEAM--T 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     E+        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHTELSFAKNDVLLFGPETRGLPMAIIESIPTEQRLRIPMAATSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQLG 149


>gi|39996299|ref|NP_952250.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983179|gb|AAR34573.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter
           sulfurreducens PCA]
          Length = 164

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 9/153 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +    +VL     P N G I R   A      +  K    ++   L ++       +   
Sbjct: 4   HQPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEVDIR 63

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----E 246
              +L    Q      F     S  + +        +   ++ G E  GL         E
Sbjct: 64  YWESLDQLRQAWPDARF--FYTSKKAARCYVDAGFREGDFIVFGKETVGLPEDLLRANEE 121

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + + G +++LN+S AA + LY     
Sbjct: 122 HC---VRIPIFGKVRSLNLSTAAGIVLYEALRQ 151


>gi|307546981|ref|YP_003899460.1| tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM 2581]
 gi|307219005|emb|CBV44275.1| putative tRNA/rRNA methyltransferase YibK [Halomonas elongata DSM
           2581]
          Length = 162

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +        +   L ++     E        + 
Sbjct: 4   VVLFQPEIPPNTGNLIRLCANTGFRLHLIEPLGFELDDKRLRRAGLDYHEWARVRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              ++ +     +   +S+  +    +       AL+ G E +GL     +         
Sbjct: 64  DAFIEAVSPR--RVFAVSTRGRTGYHEPAYGPGDALVFGPETRGLPQAMLDALPEAQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    ++LN+SNA A+ +Y      
Sbjct: 122 IPMLPESRSLNLSNACAILVYEAWRQL 148


>gi|223986174|ref|ZP_03636195.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM
           12042]
 gi|223961882|gb|EEF66373.1| hypothetical protein HOLDEFILI_03505 [Holdemania filiformis DSM
           12042]
          Length = 169

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ VA +C   +        +   + +S     E +      + 
Sbjct: 4   VVLYEPEIPQNTGNIMRTCVAANCRLHLIEPLGFSLDEQKIRRSGMDYREKLQMSVYPDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKT-QETATSM 251
                   +   +   L+   K+P            I L+ G E  G+     ++     
Sbjct: 64  AAFCA--QNPDGEFYFLTRYGKQPPASFDYTRTEKDIYLVFGRESTGIPKAILRDHLDRC 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
           A L M    ++LN+SN  A+ +Y      
Sbjct: 122 ARLPMVADARSLNLSNCVAICVYEVLRQL 150


>gi|313471789|sp|Q21LN7|TRML_SACD2 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 154

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E    +  +N 
Sbjct: 4   IVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTHANW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              ++       +   LS+   K   +    +   L+ G E +GL  +  E  T  ++  
Sbjct: 64  DAFIK--QQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEILEYITFDNVLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNAA+V +Y       
Sbjct: 122 IPMLPNSRSMNLSNAASVMVYEAWRQLG 149


>gi|254419188|ref|ZP_05032912.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185365|gb|EDX80341.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 149

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS---GALEHIPYIRISNLTDALQ 200
           P N+GA +R +  F  + +   +           K A+   G L H+   R ++  DA Q
Sbjct: 11  PQNVGACIRLSACFGVE-LHVVEPTGFRFDDRAMKRAALDYGPLSHM--TRHADW-DAFQ 66

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +    G + I  ++    PL   + +    L+ G E  G          +   + +    
Sbjct: 67  RDRPAG-RLILFTTRGATPLSDFVFHPDDTLLFGKETSGAPDYVHAAVDARVVIPLRPEA 125

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN+S  A +AL+     
Sbjct: 126 RSLNLSVTAGIALWEGLRQ 144


>gi|284048565|ref|YP_003398904.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
 gi|283952786|gb|ADB47589.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
           20731]
          Length = 156

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 5/146 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   L ++       +      ++
Sbjct: 4   IVLVEPEIPGNTGNIARLCAATGASLHLVRPLGFSVDDKYLKRAGLDYWHLVDIHYYDSV 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS--MAH 253
            + L            L++ + K   +        LI G E  GL P+    A       
Sbjct: 64  EEVLAAYPDS--PRFLLTTHAHKSYSRVHYGPDSLLIFGKESAGL-PEAFRQAHEEECVR 120

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN++N+ ++ LY     
Sbjct: 121 IPMVSEARSLNLANSVSIVLYEALRQ 146


>gi|38233828|ref|NP_939595.1| putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200089|emb|CAE49769.1| Putative tRNA/rRNA methyltransferase [Corynebacterium diphtheriae]
          Length = 156

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S+L +V D+   P+N G  +R++        +        E   L ++     +      
Sbjct: 2   SKLHIVFDNPVIPNNTGNAIRTSAVTGASLHLIEPLGFNFEDKNLKRAGLDYHDLADVHI 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
            SN    +  +     +    SS +          D   L+ G E  GL  +  E    T
Sbjct: 62  HSNFDACMNALPHS--RVFAFSSHATTWYTDIEYKDGDVLLFGTEPTGLPTEHLEHPRIT 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M    +++N+SN A++A+Y       
Sbjct: 120 QQVRIPMLPARRSMNLSNCASIAIYEAWRQLG 151


>gi|300870081|ref|YP_003784952.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000]
 gi|300687780|gb|ADK30451.1| RNA methyltransferase [Brachyspira pilosicoli 95/1000]
          Length = 167

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 1/138 (0%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R  V  +    I +K      +  + ++     E +  I+  N    L+   
Sbjct: 24  PSNTGNIGRLCVGLNISLHIVSKPSFILSAKEIRRAGLDYWEKLNLIKHENEHTFLEYCK 83

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKA 262
               + + +S       ++   +D   L+ G E  GLR    E  A +  +L M   I++
Sbjct: 84  ENNKRIVPISKFGHIRYDEFNYSDNDILLFGRESTGLRESIWENDAANSVYLPMSDDIRS 143

Query: 263 LNVSNAAAVALYITQNHF 280
           +NVSN AA+  Y      
Sbjct: 144 INVSNTAAIVSYEAFRQL 161


>gi|212704324|ref|ZP_03312452.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098]
 gi|212672286|gb|EEB32769.1| hypothetical protein DESPIG_02379 [Desulfovibrio piger ATCC 29098]
          Length = 161

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 5/144 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   +      +        E   L ++      H+      + 
Sbjct: 3   IVLFEPEIPPNTGNIARLCASTGIHLNLIEPLGFKLEDRYLKRAGLDYWPHVRMDVWPDW 62

Query: 196 TDALQKM-HSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
              L       G    + +  S+   +PL+         L+ G E +GL P+  + +   
Sbjct: 63  DSWLAAATAENGGTPPRCVMTSARGGEPLQHFAFAPDDCLVFGPETRGLPPEILKRSPYK 122

Query: 252 AHLHM-PGIIKALNVSNAAAVALY 274
             + M    ++++N+S AA + L+
Sbjct: 123 VRIPMLKDSVRSINLSTAAGIVLF 146


>gi|298505309|gb|ADI84032.1| RNA methyltransferase, TrmH family, group 2, putative [Geobacter
           sulfurreducens KN400]
          Length = 164

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 9/153 (5%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +    +VL     P N G I R   A      +  K    ++   L ++       +   
Sbjct: 4   HQPFHIVLVEPEIPPNTGNIARLCGATGTVLHLVGKLGFSTDDRYLKRAGLDYWSEVDIR 63

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----E 246
              +L    Q      F     S  + +       ++   ++ G E  GL         E
Sbjct: 64  YWESLDQLRQAWPDARF--FYTSKKAARCYVDAGFHEGDFIVFGKETVGLPEDLLQANEE 121

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                  + + G +++LN+S AA + LY     
Sbjct: 122 HC---VRIPIFGKVRSLNLSTAAGIVLYEALRQ 151


>gi|237784952|ref|YP_002905657.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237757864|gb|ACR17114.1| putative rRNA methylase, SpoU class [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 195

 Score = 71.2 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 5/157 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N  L +V D    P N G  +R          +        E   L ++     + +  
Sbjct: 35  PNPPLHVVFDQPVIPPNTGNAIRMCAGVGAHLHLCEPLGFNLEEKNLRRAGLDYHDLVDV 94

Query: 190 IRISNLTDALQKMHS---WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               +L + L  + +    G +    +S +   ++         L+ G E  GL  +   
Sbjct: 95  TIHPSLDECLTTLGAGAPDGPKVYAFTSHTSVRVDTVPYQWGDVLLFGCEPTGLSAEALA 154

Query: 247 --TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               TS   + M    +++N+SNAAAV  Y       
Sbjct: 155 DPRITSHVRIPMLPGRRSMNLSNAAAVGAYEAWRQLG 191


>gi|163849091|ref|YP_001637135.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
 gi|222527064|ref|YP_002571535.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
 gi|163670380|gb|ABY36746.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450943|gb|ACM55209.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
          Length = 239

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 30/167 (17%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP--- 188
           + ++++L    DP NIGA++R+ +   C  +       P + A ++     A+ H P   
Sbjct: 2   NDIIVILHQPRDPRNIGAVVRAMLNTGCHHLRLVDPC-PFDPATIS-----AVAHRPDPV 55

Query: 189 ---YIRISNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIAL 231
                  ++L++A+  +       +G S                + +  ++      +A+
Sbjct: 56  LANLTVHAHLSEAIADIR----YLVGTSDRPHPGLPWRNDVRQWANETRQRAASTGPVAI 111

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + G+EG GL          +  L M      LN++ A  + LY  Q 
Sbjct: 112 LFGSEGNGLSRDELVLCQEILGLPMASDYPVLNLAQAVLLVLYELQQ 158


>gi|310827287|ref|YP_003959644.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308739021|gb|ADO36681.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 154

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        +   L ++     + +      + 
Sbjct: 3   VVLYQPEIPQNTGNIARTCALTNTKLHLIKPLGFSLDEKHLKRAGLDYWDLLDLAVYDDF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            D L    +   +   L++ +K             L+ G E  GL  +           +
Sbjct: 63  EDFLD--KNPDPEIYVLTTHAKAFYSDIEYTGDAYLLFGRETAGLPDEIHSAYPDHRFRI 120

Query: 255 HMPGI--IKALNVSNAAAVALYITQNHFA 281
            M      ++LN+SN+  + LY       
Sbjct: 121 PMRNHERARSLNLSNSVNIVLYEALRQLG 149


>gi|303326589|ref|ZP_07357032.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           3_1_syn3]
 gi|302864505|gb|EFL87436.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           3_1_syn3]
          Length = 108

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQE 246
            +++NL  AL      G    G              +       L+LG E KGLRP   +
Sbjct: 9   AQVTNLAHALDSAEEAGLTIYGAGGAPDPNSLDAFADGLRLPAVLVLGNEDKGLRPGVAK 68

Query: 247 TATSMAHLHMPGIIKALNVS 266
               M  + +     +LNV+
Sbjct: 69  RCAHMLRIPLARPFDSLNVA 88


>gi|217971422|ref|YP_002356173.1| TrmH family RNA methyltransferase [Shewanella baltica OS223]
 gi|304412327|ref|ZP_07393935.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS183]
 gi|307306111|ref|ZP_07585856.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           BA175]
 gi|217496557|gb|ACK44750.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS223]
 gi|304349362|gb|EFM13772.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS183]
 gi|306910984|gb|EFN41411.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           BA175]
          Length = 154

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +     R  +    L+ M   
Sbjct: 14  NTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKDFDAFLEAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     E+        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMAIIESIPTEQRLRIPMAATSRSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  Y      
Sbjct: 132 NLSNAVAIISYEAWRQL 148


>gi|295697073|ref|YP_003590311.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM
           2912]
 gi|295412675|gb|ADG07167.1| RNA methyltransferase, TrmH family, group 2 [Bacillus tusciae DSM
           2912]
          Length = 157

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +      +VL     P N G + R+  A      +        +   L ++       + 
Sbjct: 1   MERRPFHVVLVEPEIPPNTGNVARTCAATGTVLHLVRPLGFEVDDRHLRRAGLDYWHWVH 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                   D L++     F         K+   +        L+ G E +GL     E  
Sbjct: 61  VEYHDRFEDLLEEHPEGRFFYFST--KGKRQYAEVRYRPGDFLVFGKETRGLPDALLERF 118

Query: 249 -TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M   I++LN+SN+ A+AL+     
Sbjct: 119 PEQTLRIPMRPDIRSLNLSNSVALALFEALRQ 150


>gi|302038465|ref|YP_003798787.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira
           defluvii]
 gi|300606529|emb|CBK42862.1| RNA methyltransferase TrmH, group 2 [Candidatus Nitrospira
           defluvii]
          Length = 154

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R          +        E   L ++     E        + 
Sbjct: 4   VILYQPEIPPNTGNIIRLCANTGASLHLVKPLGFTLEDKQLLRAGLDYHEFASITVYESW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
            + + +    G +   +S+  ++  +     +  A + G E +GL  +   + +      
Sbjct: 64  DECVARF--TGARLFAVSTKGRQRYDLVRYTEGDAFVFGPESRGLPAEILGSVSEQQCLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH--FAK 282
           + M    ++LN+SN+ AV LY       F K
Sbjct: 122 VPMVPGSRSLNLSNSVAVVLYEAWRQVEFGK 152


>gi|127513248|ref|YP_001094445.1| RNA methyltransferase [Shewanella loihica PV-4]
 gi|126638543|gb|ABO24186.1| RNA methyltransferase, TrmH family, group 1 [Shewanella loihica
           PV-4]
          Length = 252

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL     P NIG+  R+        +   +     +   +A  A+GA + + + + +  
Sbjct: 7   VVLVGTTHPGNIGSTARAMKTMGLSTLYLAEPKVAPDGQSVA-LAAGASDILKHAVTVDC 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-------------NDKIALILGAEGKGLR 241
           L DA+          I  S+ S+      +              N  +A++ G E  GL 
Sbjct: 66  LEDAIADCS----LVIATSARSRTLDWPMLDPRQAGEKLAGAAVNGPVAIVFGRESNGLS 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFA 281
               +       +       +LN++ A  +  Y  +  H A
Sbjct: 122 NDELQKCNYHVTIPANPEYTSLNLAQAVQIICYEARVAHLA 162


>gi|306824493|ref|ZP_07457839.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304433280|gb|EFM36250.1| TrmH family RNA methyltransferase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 167

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +   +   A   + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAEKVYSEADLSTDEAHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q HFA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQHFA 153


>gi|293401528|ref|ZP_06645671.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305166|gb|EFE46412.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 169

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R+ +A +    +        + A L ++    ++ + Y    N 
Sbjct: 4   LVLYEPEIPQNTGNMMRTCMATNTKLHLIQPLGFSLDEAHLRRAGMDYMKELDYRLYENW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQ-ETATSM 251
            D  ++  S  +    ++   K+   Q         I L+LG E  G+      +     
Sbjct: 64  DDFTKQNPSNNY--YYMTRYGKQAPSQIDFTQCEGDIYLVLGKESTGIPKAILAKQLDHC 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             L M    ++LN+SN AA+ +Y      
Sbjct: 122 MRLPMVANARSLNLSNCAAIIVYEVLRQL 150


>gi|154331091|ref|XP_001561985.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059307|emb|CAM37009.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 585

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 85/266 (31%), Gaps = 94/266 (35%)

Query: 80  RLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSP--------------- 124
           R           PV+ VP   + ++ G+    Q + LE +                    
Sbjct: 180 RCITTLAKSLKVPVRFVPRAELVQLCGERRN-QNIVLEASSYKPQPIRHLGEIWGAEGGA 238

Query: 125 ---------------------TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
                                +L+       ++ L+ + DP N+G ILR+A  F  D ++
Sbjct: 239 STTTGVASTTTAVESSAHGVRSLEGAAGLVTVLFLERIIDPTNVGGILRTAFFFGVDHVV 298

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHS---------------WGF 207
            +++ + + +A ++++++G LEH+   R  ++    L+                    G 
Sbjct: 299 LSRQCA-TCTAAVSRTSTGFLEHLCVYRASTSSAAFLRASQEVWALRGSSSASVTAVSGL 357

Query: 208 QTIG------------------------LSSDSK-KPLEQEIKNDKI------------- 229
           + I                          SSDS    +  E  ND               
Sbjct: 358 EIIASAVVSYPTAQRRGASEGAPVLPSVASSDSAPSEVSVENGNDNTRACAQQPHPCLPA 417

Query: 230 --ALILGAEGKGLRPKTQETATSMAH 253
              L+LG E  GL P   +  T +AH
Sbjct: 418 VRVLLLGNEDAGLPPDLLQWCTHVAH 443


>gi|313901727|ref|ZP_07835156.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468015|gb|EFR63500.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter subterraneus
           DSM 13965]
          Length = 153

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 3/135 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G + R+         +           +L ++      H+ +       D L  +   
Sbjct: 14  NTGNVARTCAVTGARLHLVRPLGFRLSDRLLKRAGLDYWAHVAWQVHDTWDDLLAAL--P 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPGIIKALN 264
           G +   L         Q        L+ G+E +GL P   +E    +  + M   +++LN
Sbjct: 72  GARFCYLDPRGSLWYSQMDFAPGDVLVFGSESRGLPPGLMEERPGPVLRVPMRPGLRSLN 131

Query: 265 VSNAAAVALYITQNH 279
           +++  A+ LY     
Sbjct: 132 LASTVALVLYEAYRQ 146


>gi|291544815|emb|CBL17924.1| rRNA methylase, putative, group 2 [Ruminococcus sp. 18P13]
          Length = 172

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL +VL     P N G I R+         +            L ++     + +     
Sbjct: 3   QLNIVLVEPQIPQNTGNIARTCAVTGARLHLIRPMGFTVTDKHLKRAGLDYWDKLDITYY 62

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            +  +      + G      +   +K     +  +   LI G E +GL            
Sbjct: 63  DSFAEF--SARNPGAYFFFTT-KGRKIHSDAVYPNNAYLIFGREDQGLPEDLLFAHPEEC 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN+ A+A+Y     
Sbjct: 120 VRIPMRNELRSLNLSNSVAIAVYEALRQ 147


>gi|322495535|emb|CBZ30840.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 607

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 6/168 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           NH   +     +   ++    + L + G   +        R    ++    A+  L  D 
Sbjct: 121 NHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGHRPRHLMVERGKAIPELLHDR 180

Query: 86  NLPHPFPVKTVPPQTIDKI-VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  V  V       +  G +       + T P+    +   +    ++VLD+V DP
Sbjct: 181 R---KTDVVLVDRSVSAAVNPGSDGYVGDFEIPTPPMKEQLIANHQRLNRVLVLDNVEDP 237

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
             +G +LR+A  +  D II T   +      + ++A GA     +P  
Sbjct: 238 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVIRAARGAHFQTSVPIY 285


>gi|332295004|ref|YP_004436927.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
 gi|332178107|gb|AEE13796.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
           14796]
          Length = 149

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  VA     II            L ++     +H+ +      
Sbjct: 3   VVLVEPEIPQNTGNIGRLCVATGVSLIIVGPTGFILNDKKLKRAGMDYWKHLDFTFYPTF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH-L 254
            +A              S   K    +   + +  LI G E  GL     +      + +
Sbjct: 63  EEARAVFDQNDIFLF--SPSGKNIYTKGRYSKESILIFGKESMGLDKNILQEFEEKTYFI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN++N+ A+ LY      
Sbjct: 121 PMKKEARSLNLANSVAIVLYEALRQI 146


>gi|254482693|ref|ZP_05095931.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
           proteobacterium HTCC2148]
 gi|214037052|gb|EEB77721.1| RNA methyltransferase, TrmH family, group 2 [marine gamma
           proteobacterium HTCC2148]
          Length = 157

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 4/150 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I+R      C   +        +   L ++     E        
Sbjct: 5   LKIVLYQPEIPPNTGNIMRLCANTGCSLHLIEPLGFDLDEKKLRRAGLDYREFAEVSVYP 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
            L            + +G+++    P  Q       AL+ G E +GL             
Sbjct: 65  ELNTF--TAKHPQCRLMGVTTKGSTPHHQAAYTSGDALLFGPETRGLPASVLSKLPPQQR 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    ++LN+SNAAAV  Y       
Sbjct: 123 IRIPMLKNSRSLNLSNAAAVITYEALRQLG 152


>gi|120612549|ref|YP_972227.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120591013|gb|ABM34453.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 158

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  ++ ++     E+    + +  
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCILHLVEPLGFSMEDKLMKRAGLDYHEYAEVRQHAGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
           T  L+       +   +++     + + +       + GAE +GL P+ ++    A    
Sbjct: 64  TAFLRDAQPNPERVFAMTTHGVHTVYESLFLPGDWFVFGAESRGLPPELRDAFPPA-QRL 122

Query: 253 HLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
            L M    ++LN+SNA AV +Y    QN FA
Sbjct: 123 RLPMLPGQRSLNLSNAVAVTVYEAWRQNGFA 153


>gi|169825957|ref|YP_001696115.1| putative tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus sphaericus C3-41]
 gi|168990445|gb|ACA37985.1| Hypothetical tRNA/rRNA methyltransferase in gldA 3'region
           [Lysinibacillus sphaericus C3-41]
          Length = 157

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+    +    +       ++  +L ++       +  +  
Sbjct: 2   PLHIVLYQPEIPANTGNIARTCAGTNTSLHLIRPLGFSTDDKMLKRAGLDYWHSVNIVYH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ-ETA 248
           ++L D ++         I   SD  +P      ++K   I  + G E  GL      E  
Sbjct: 62  NSLDDFIEYSRDGDVYLIETYSD--EPFTTHDFSNKERDIYFMFGKETTGLPKDFAYERR 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                +     +++LN+SN AA+ +Y     
Sbjct: 120 NMCLRIPQSDHVRSLNLSNTAAIVIYEALRQ 150


>gi|149194269|ref|ZP_01871366.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus
           TB-2]
 gi|149135444|gb|EDM23923.1| tRNA/rRNA methyltransferase (SpoU) [Caminibacter mediatlanticus
           TB-2]
          Length = 153

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R  V       I            + ++     + +      ++
Sbjct: 4   IVLFNPQIPPNTGNIGRLCVNAGAKLHIVKPIGFDISQKAVKRAGLDYWDKLDLKVWESV 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + L+ + +   +    ++ +K P  ++        I G+E KG+  K       +   +
Sbjct: 64  EEFLKNVDTN--RCFFATTKTKTPYFEKKYKKGDYFIFGSETKGIDEKILNQYKENNITI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN++ +  + LY     
Sbjct: 122 PMTNEGRSLNLAVSCGIILYEAIRQ 146


>gi|240169060|ref|ZP_04747719.1| putative tRNA/rRNA methylase [Mycobacterium kansasii ATCC 12478]
          Length = 154

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+A A  C+  +            L ++     +       ++LT A   +   
Sbjct: 14  NTGNAIRTAAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLTAAWDAL--L 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKAL 263
             +    ++ +  P           L+ G E  GL   T   A  T    + M    ++L
Sbjct: 72  PARVFAFTAQATTPFSDVSYRAGDVLMFGPEPTGLDAATLADAHITEQVRIPMLAGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAVA+Y     
Sbjct: 132 NLSNAAAVAVYEAWRQ 147


>gi|190348050|gb|EDK40436.2| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1409

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 7/157 (4%)

Query: 124  PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                AV+ S L++V   V+   N+G I R        G++T        S      A  A
Sbjct: 1249 KDEKAVKRSDLIVVSSLVDKAPNLGGICRLCDVLGA-GLLTLADIRVKNSPHFKNVAVTA 1307

Query: 184  LEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGK 238
               +P   + +  + + + +  S G+  +GL   + K LE   +     K  ++LG E +
Sbjct: 1308 DRWMPMEEVPVDQIKNYMVQKKSEGYTLVGLEQ-TDKSLELNSELKFPKKTLMLLGREKE 1366

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            G+             +   G+I+++N+  A AV ++ 
Sbjct: 1367 GIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHA 1403


>gi|146415670|ref|XP_001483805.1| hypothetical protein PGUG_04534 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1409

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 7/157 (4%)

Query: 124  PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
                AV+ S L++V   V+   N+G I R        G++T        S      A  A
Sbjct: 1249 KDEKAVKRSDLIVVSSLVDKAPNLGGICRLCDVLGA-GLLTLADIRVKNSPHFKNVAVTA 1307

Query: 184  LEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKIALILGAEGK 238
               +P   + +  + + + +  S G+  +GL   + K LE   +     K  ++LG E +
Sbjct: 1308 DRWMPMEEVPVDQIKNYMVQKKSEGYTLVGLEQ-TDKSLELNSELKFPKKTLMLLGREKE 1366

Query: 239  GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            G+             +   G+I+++N+  A AV ++ 
Sbjct: 1367 GIPGDLLAELDFCVEIKQVGVIRSMNIQTATAVIVHA 1403


>gi|126698145|ref|YP_001087042.1| putative RNA methylase [Clostridium difficile 630]
 gi|254974166|ref|ZP_05270638.1| putative RNA methylase [Clostridium difficile QCD-66c26]
 gi|255091567|ref|ZP_05321045.1| putative RNA methylase [Clostridium difficile CIP 107932]
 gi|255099672|ref|ZP_05328649.1| putative RNA methylase [Clostridium difficile QCD-63q42]
 gi|255305555|ref|ZP_05349727.1| putative RNA methylase [Clostridium difficile ATCC 43255]
 gi|255313293|ref|ZP_05354876.1| putative RNA methylase [Clostridium difficile QCD-76w55]
 gi|255515984|ref|ZP_05383660.1| putative RNA methylase [Clostridium difficile QCD-97b34]
 gi|255649075|ref|ZP_05395977.1| putative RNA methylase [Clostridium difficile QCD-37x79]
 gi|260682266|ref|YP_003213551.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260685865|ref|YP_003216998.1| putative RNA methylase [Clostridium difficile R20291]
 gi|306519189|ref|ZP_07405536.1| putative RNA methylase [Clostridium difficile QCD-32g58]
 gi|115249582|emb|CAJ67399.1| putative tRNA/rRNA methyltransferase [Clostridium difficile]
 gi|260208429|emb|CBA60985.1| putative RNA methylase [Clostridium difficile CD196]
 gi|260211881|emb|CBE02320.1| putative RNA methylase [Clostridium difficile R20291]
          Length = 156

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 7/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+  A      +        +   L +      +        + 
Sbjct: 5   IVLVEPEIPQNTGNIIRTCAATGSTLHLVKPLGFSLDDKHLKRCGLDYWDIADIQYYDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
            +  +K  +  +     ++ +K+        +   ++ G E KGL  P  +    +   +
Sbjct: 65  EELQEKYPNSKY--FFSTTKAKQSHSDVKYEENCFIVFGKETKGLPEPLLKANMDTCIRV 122

Query: 255 HMPGIIK---ALNVSNAAAVALYITQNHFA 281
            M   ++   +LN+SN+ A+ +Y       
Sbjct: 123 PML-DVEKARSLNLSNSVAIVVYEALRQIG 151


>gi|310823406|ref|YP_003955764.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396478|gb|ADO73937.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 244

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 13/163 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG--ALEHIP 188
             QL +VL     P N+GA+ R    F    +I +   + +       +  G   LE + 
Sbjct: 4   GEQLTVVLHQTRSPDNLGAVARVMANFGFFRLILSDPATYAFRGAERLAVKGERVLERMA 63

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE---------QEIKNDKIALILGAEGKG 239
             R   L +AL +       T       + PL          +E    ++AL+LG E +G
Sbjct: 64  VAR--ELPEALSECVYAVGTTSRTQLKGRIPLTPEQAVRRLAEESARGRVALVLGGEQRG 121

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L          +  +    +  ++N++ AA V LY+     A+
Sbjct: 122 LSDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLYLCGREDAQ 164


>gi|83644213|ref|YP_432648.1| rRNA methylase (SpoU class) [Hahella chejuensis KCTC 2396]
 gi|83632256|gb|ABC28223.1| predicted rRNA methylase (SpoU class) [Hahella chejuensis KCTC
           2396]
          Length = 154

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E+ P  R  + 
Sbjct: 4   IVLFQPEIPPNTGNIIRLCANCGFTLHLIEPLGFTWDDKRLQRAGLDYHEYAPVKRHGDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L ++     +   LS+  K    +       AL+ G E +GL  +  +   + S   
Sbjct: 64  QQFLDEVRPN--KVYALSTRGKSYYHEVSFAAGDALVFGPETRGLPQQMLDELGSESCLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    ++LN+SN  A+  Y       
Sbjct: 122 VPMRQDSRSLNLSNTVALVSYEAWRQLG 149


>gi|120598674|ref|YP_963248.1| RNA methyltransferase [Shewanella sp. W3-18-1]
 gi|146293248|ref|YP_001183672.1| RNA methyltransferase [Shewanella putrefaciens CN-32]
 gi|120558767|gb|ABM24694.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp.
           W3-18-1]
 gi|145564938|gb|ABP75873.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           putrefaciens CN-32]
 gi|319426238|gb|ADV54312.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           putrefaciens 200]
          Length = 241

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 18/160 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        +   +     +   +A +A  +      +++ +L
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVEPDGQSIALAAGASDILKHLVKVDSL 66

Query: 196 TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +A+          I  S+             ++ + L  E     +A++ G E  GL  
Sbjct: 67  AEAIADCS----LVIATSARSRTLDWPMLEPREAGQKLVTESVTGPVAIVFGRENHGLSN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFA 281
           +  +  T    +       +LN++ A  +  Y T+  H A
Sbjct: 123 EELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLA 162


>gi|297821280|ref|XP_002878523.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324361|gb|EFH54782.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 260

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 9/164 (5%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +  R+  L +VL     P N G I R+  A +    +        + A + ++       
Sbjct: 72  EDARSKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPF 131

Query: 187 IPYIRISNLTDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           +     S+  +  +         + I  +    +            L+ G+E  GL P+ 
Sbjct: 132 VVVRAHSSWAEFQEYFRQQEGEKRMIAFTKRGTRIHSDFSYRPGDYLLFGSETCGLPPEA 191

Query: 245 QETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                          + M    ++ LN+S +  +ALY       
Sbjct: 192 LSDCKHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLN 235


>gi|322503109|emb|CBZ38193.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 607

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 6/168 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +H   +     +   ++    + L + G   +        R    ++       R+    
Sbjct: 121 HHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGHRPRHLMV---ECGKRIPEFL 177

Query: 86  NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  V  V       +  G +       + T P+    +   +    ++VLD+V DP
Sbjct: 178 RDRRKTDVVLVDRSVSAAVTPGSDGYVGDFEIPTPPMKEQLIANHQRLNRVLVLDNVEDP 237

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
             +G +LR+A  +  D II T   +      + ++A GA     +P  
Sbjct: 238 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHFQTSVPIY 285


>gi|146101359|ref|XP_001469096.1| hypothetical protein [Leishmania infantum]
 gi|134073465|emb|CAM72196.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 607

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 6/168 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +H   +     +   ++    + L + G   +        R    ++       R+    
Sbjct: 121 HHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGHRPRHLMV---ECGKRIPEFL 177

Query: 86  NLPHPFPVKTVPPQTIDKIV-GKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDP 144
                  V  V       +  G +       + T P+    +   +    ++VLD+V DP
Sbjct: 178 RDRRKTDVVLVDRSVSAAVTPGSDGYVGDFEIPTPPMKEQLIANHQRLNRVLVLDNVEDP 237

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYI 190
             +G +LR+A  +  D II T   +      + ++A GA     +P  
Sbjct: 238 GVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHFQTSVPIY 285


>gi|60416311|sp|P69001|TRML_LISIN RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase lin0934
 gi|313624393|gb|EFR94411.1| RNA methyltransferase, TrmH family, group 2 [Listeria innocua FSL
           J1-023]
          Length = 169

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      +L
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATS-M 251
            +  +   + G +   ++   +        +D       + G E  GL  +  +      
Sbjct: 65  DEFFE--KNAGGEFYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDELLQANEENC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AAV  Y     
Sbjct: 123 LRIPMTDHIRSLNLSNTAAVLAYEALRQ 150


>gi|118580121|ref|YP_901371.1| tRNA/rRNA methyltransferase SpoU [Pelobacter propionicus DSM 2379]
 gi|118502831|gb|ABK99313.1| tRNA/rRNA methyltransferase (SpoU) [Pelobacter propionicus DSM
           2379]
          Length = 157

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 4/155 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                 +VL     P N G I R   A      +        +   L ++       +  
Sbjct: 3   ETPPFNIVLVEPEIPPNTGNIARLCAATGTVLHLVEPLGFSIDDRQLKRAGLDYWGSVTL 62

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TA 248
                L    Q+     F    LS+ + +            ++ G E KGL  +  E  +
Sbjct: 63  KVWQRLEQVWQEFPRGRF--FYLSTKAGRSYLAADFRPGDFIVFGKETKGLPAEILEWNS 120

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNHFAK 282
            +   + MP   +++LN+S +A + LY       +
Sbjct: 121 ETAITIPMPANAVRSLNLSTSAGIVLYEALRQAGQ 155


>gi|116053273|ref|YP_793597.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588494|gb|ABJ14509.1| putative RNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 153

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ +     +    ++   +   +       A + G E +GL    +          
Sbjct: 64  QSCLEALGQS--RLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDRRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  AV +Y       
Sbjct: 122 LPMREGCRSLNLSNTVAVTVYEAWRQLG 149


>gi|306819661|ref|ZP_07453324.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552306|gb|EFM40234.1| TrmH family RNA methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 154

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ V       +        +   + ++    + H   I     
Sbjct: 3   IVLFEPEIPQNTGNIIRTCVCTGTTLHMIRPFGFSMDEKQIKRAGMDYISHADIIYYDCF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            +  +K              ++K            LI G E +GL  K ++        +
Sbjct: 63  EEYFEKYDKDDMFFFTT--KAEKSYSDVKYTKNSHLIFGPESRGLPEKIRKINIQNDVRI 120

Query: 255 HMPGI--IKALNVSNAAAVALYITQNH 279
            M     +++LN+SN+ A+ L+     
Sbjct: 121 PMKANEYVRSLNLSNSVAIGLFEALRQ 147


>gi|258514114|ref|YP_003190336.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777819|gb|ACV61713.1| RNA methyltransferase, TrmH family, group 2 [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 168

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+  A S    +       +E   L ++       +      + 
Sbjct: 3   IVLVEPEIPANTGNIVRTCAATSSVLHLVRPLGFSTEDKYLKRAGLDYWYLVEIYYHDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +AL++ +  G      +  ++   + E       L+ G E +GL     +  + +   +
Sbjct: 63  -EALKEKYPLGTFYYVSTKAARHYCDVEYGPGDF-LVFGKETRGLPESLLQANSGNCVRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M    ++LN++N+ A+ LY      A
Sbjct: 121 PMVSDARSLNLANSVAIVLYEALRQQA 147


>gi|71906256|ref|YP_283843.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB]
 gi|71845877|gb|AAZ45373.1| RNA methyltransferase TrmH, group 2 [Dechloromonas aromatica RCB]
          Length = 154

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 10/151 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       +  +            L ++     E+   +R +
Sbjct: 2   FAVVLYRPEIPPNTGNIIRMCANTGAELHLVEPLGFDLSDKHLRRAGLDYHEYARIVRHA 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-----ETA 248
           +       +   G +   +++                 + G E  GL P+ +     E  
Sbjct: 62  DWAACKAAL--AGRRLFAMTTKGTASPFSTALEANDVFVFGCETSGLPPEIRAEFSPERC 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                L M    ++LN+SNAAAV ++     
Sbjct: 120 ---LRLPMLPGQRSLNLSNAAAVTVFEAWRQ 147


>gi|241764399|ref|ZP_04762424.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
           2AN]
 gi|241366189|gb|EER60760.1| RNA methyltransferase, TrmH family, group 2 [Acidovorax delafieldii
           2AN]
          Length = 168

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  ++ ++     E+   +R    
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCTLHLIEPLGFSMEDRLMRRAGLDYHEYAQVLRHPGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
           T  L++      +   L++   +   +        L+ GAE +GL P+ +ET   A    
Sbjct: 64  TAFLRQAQPDPARMFALTTHGTQTAFETCFLPGDWLVFGAETRGLPPELRETFPPA-QRL 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV ++     
Sbjct: 123 RLPMVSGQRSLNLSNAVAVTVFEAWRQ 149


>gi|284034585|ref|YP_003384516.1| tRNA/rRNA methyltransferase SpoU [Kribbella flavida DSM 17836]
 gi|283813878|gb|ADB35717.1| tRNA/rRNA methyltransferase (SpoU) [Kribbella flavida DSM 17836]
          Length = 226

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 7/142 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD  R+    + +++     NIG+++R+A AF    +               + A   
Sbjct: 69  EDLDQQRH-PFHVAIENWQHDLNIGSVVRTANAFLAREVHIVGNR-----KWNRRGAMVT 122

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             +        L D            IG+       PLE     +   L+ G EG GL  
Sbjct: 123 DRYQHVRHHPQLADLAGYAEQQNLPVIGVDNLPGSVPLETYELPEACVLLFGQEGPGLTD 182

Query: 243 KTQETATSMAHLHMPGIIKALN 264
                 T + ++   G  +++N
Sbjct: 183 AAHRICTDVLNIGQYGSTRSIN 204


>gi|167771109|ref|ZP_02443162.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM
           17241]
 gi|167666779|gb|EDS10909.1| hypothetical protein ANACOL_02463 [Anaerotruncus colihominis DSM
           17241]
          Length = 171

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L +VL     P N G I R+  A      +          A L ++       +    
Sbjct: 2   ATLNIVLIEPQIPQNTGNIARTCAATGARLHLVGPMGFEITDAKLKRAGLDYWHLLDITT 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATS 250
             +         + G      ++ +++   +    D   ++ G E  GL  +   +    
Sbjct: 62  YPDSASFFA--QNRG-PFYFFTTKARRTYTEPQYPDGAYIVFGREDAGLPEELLFQNPDC 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AVA+Y     
Sbjct: 119 CVRLPMIAGARSLNLSNTVAVAVYEVLRQ 147


>gi|261856917|ref|YP_003264200.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus
           neapolitanus c2]
 gi|261837386|gb|ACX97153.1| RNA methyltransferase, TrmH family, group 2 [Halothiobacillus
           neapolitanus c2]
          Length = 159

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        E+  L ++     E       S+ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGVRLHLVEPLGFSMETKALRRAGLDYHEFAEVTVHSDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
                 +     +   +++                L+ G E +GL P       A S   
Sbjct: 64  AALRSVLDGR--RLFAMTTKGSTSFYAARFEAGDVLVFGPETRGLPPHILAEFDADSRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           L M    ++LN+SN  A+A+Y      
Sbjct: 122 LPMKPDSRSLNLSNTVAIAVYEVWRQL 148


>gi|209966010|ref|YP_002298925.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
 gi|209959476|gb|ACJ00113.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
          Length = 188

 Score = 70.8 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEHIPYIRISNLTD 197
           + ++   N+G ILR+  AF    + T    +  + A + ++  SG  EH+P    + + D
Sbjct: 10  EGISKSGNVGTILRTGHAFGASFVFTV--NAALDMAEVRRTDTSGGDEHVPLYAWNRVAD 67

Query: 198 -ALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            AL +    G Q +G+   D    L       + A +LG E   L P        +  + 
Sbjct: 68  MALPE----GCQLVGVELTDDAVVLPSFRHPLRAAYVLGPERGSLSPAMVARCDHIVRIP 123


>gi|325570819|ref|ZP_08146502.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156329|gb|EGC68511.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
           12755]
          Length = 236

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      +L
Sbjct: 73  IVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKDL 132

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPK-TQETATSM 251
              +  +         +S  + +           D+   I G E  GL     +E A   
Sbjct: 133 ATFMDFLGER--PLYLISKFANRVYSDVDYTADDDQF-FIFGKETTGLPESFMREHAEKC 189

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 190 LRIPMNDEHVRSLNLSNTAALIIYEVLRQ 218


>gi|152985329|ref|YP_001351180.1| putative rRNA methylase [Pseudomonas aeruginosa PA7]
 gi|150960487|gb|ABR82512.1| probable rRNA methylase [Pseudomonas aeruginosa PA7]
          Length = 153

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            D L+ +     +    ++   +   +       A + G E +GL  + +    A     
Sbjct: 64  QDCLEALGQP--RLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEEVRNALPAERRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  AV +Y       
Sbjct: 122 LPMREGCRSLNLSNTVAVTVYEAWRQLG 149


>gi|329849321|ref|ZP_08264167.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
 gi|328841232|gb|EGF90802.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
          Length = 267

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 24/177 (13%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              AP L P L         ++LD      NIG++ R    F    +             
Sbjct: 4   ARPAPPLDPNLTLP-----CVILDRPQLADNIGSVARVMANFGLQELRLVAPRDGWPQDR 58

Query: 176 LAKSASGALEHIPYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKP--------------L 220
              ++SGA   +   ++ + + +A+  +          ++ +++                
Sbjct: 59  AWATSSGANWPLDGAKVFATVAEAVADLK----TVYATTARNREVHLPVVTPRQTAVEAY 114

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                + K  L+ GAE  GL         ++  + +     +LN++ A  + LY  +
Sbjct: 115 AAAQGHQKTGLLFGAERAGLETSDIALCHAIVTIPVDPHFHSLNLAQAVNIILYEWR 171


>gi|302877470|ref|YP_003846034.1| RNA methyltransferase, TrmH family, group 2 [Gallionella
           capsiferriformans ES-2]
 gi|302580259|gb|ADL54270.1| RNA methyltransferase, TrmH family, group 2 [Gallionella
           capsiferriformans ES-2]
          Length = 158

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        E   L ++     E        +L
Sbjct: 4   VILYQPEIPPNTGNIIRLCANTGCQLHLIKPLGFTLEDKQLIRAGLDYHEFANLRVYDHL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L      G +   L++   +P  +       A + G E +GL  +       T    
Sbjct: 64  EACLSAF-DAG-RIFALTTKGSQPFHEIRYQPGDAFLFGPESRGLPAEVLNQLTTTQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA++     
Sbjct: 122 LPMLPDNRSLNLSNTVAVAVFEAWRQ 147


>gi|115477186|ref|NP_001062189.1| Os08g0506500 [Oryza sativa Japonica Group]
 gi|42408928|dbj|BAD10185.1| rRNA methylase-like [Oryza sativa Japonica Group]
 gi|113624158|dbj|BAF24103.1| Os08g0506500 [Oryza sativa Japonica Group]
          Length = 236

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 54/171 (31%), Gaps = 23/171 (13%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
             P+ S    A     L +VL     P N G+I R+  A +    +   RY      V+ 
Sbjct: 57  VGPVGSGAEVARAKRMLHVVLVSPLIPGNTGSIARTCAASAVGLHLVGVRY------VVV 110

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           K      E   Y    +    L      G      S  S    +         L+ G+E 
Sbjct: 111 KIHDSWNEFRDYFMKQDGEKRLLAFTKRG-----TSIHSDFSYKPGDW-----LVFGSET 160

Query: 238 KGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           KGL     E  +          + M    ++ LN+S +  VALY       
Sbjct: 161 KGLPQSALEDCSREGLGGGTIRIPMVETYVRCLNLSVSVGVALYEAARQLN 211


>gi|82705756|ref|XP_727099.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482786|gb|EAA18664.1| Saccharomyces cerevisiae ORF 2310-related [Plasmodium yoelii
           yoelii]
          Length = 777

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++   ++   N+  + R+   F+   ++ +      +     K +S A + +  
Sbjct: 625 KKNNLIVIASLIDKVPNLAGLCRTCEIFNVKKLLLSNINIVKDFQ-FQKISSTANKWMNI 683

Query: 190 IRIS-NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +  N            +  IGL  ++  K L   I  +   LILG E +GL       
Sbjct: 684 QELKKNDIIKYLIKKKKKYSIIGLEQTNDSKQLNDFIFPENCILILGDEKEGLPSSILLL 743

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  +AA+ +Y     
Sbjct: 744 LHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQ 775


>gi|322373881|ref|ZP_08048416.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
 gi|321277253|gb|EFX54323.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
          Length = 184

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 8/151 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 21  IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 80

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + K        +   +D     E          + G E  GL  +  +E A     +
Sbjct: 81  ADFMSKNQQGRLHLVTKFADKTYSDEVYDDGKDHYFMFGREDTGLPEEFMREHAEKAIRI 140

Query: 255 HMP-GIIKALNVSNAAAVAL--YI--TQNHF 280
            M    +++LNVSN   V +  Y    Q  F
Sbjct: 141 PMNDEHVRSLNVSNT--VCMIVYEALRQQQF 169


>gi|319781864|ref|YP_004141340.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167752|gb|ADV11290.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 152

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 2/140 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N +L + L   +   N G ILR A        I      P     L ++    LE     
Sbjct: 2   NRRLRIALYQPDIAGNTGTILRFAACLGLGVDIIEPAGFPLSDKALKRAGMDYLEMAALT 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           R  +     +   +   + + LS+ +          D   L+ G E  G+     + A +
Sbjct: 62  RHVDWHAFEEWRKADSHRLVLLSTKATTAYTSFSFADGDVLLFGRESAGVPDPVHQAADA 121

Query: 251 MAHLHMPGIIKALNV--SNA 268
              + M G  +++NV  S A
Sbjct: 122 RLTIPMQGTARSINVALSVA 141


>gi|329770522|ref|ZP_08261900.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325]
 gi|328836271|gb|EGF85940.1| hypothetical protein HMPREF0433_01664 [Gemella sanguinis M325]
          Length = 157

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   + ++     + +  +   + 
Sbjct: 4   IVLYQPEIPANTGNIARTCVGTNTRLHLIRPLGFSIDDKQVKRAGLDYWKDLDLVVWDSF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGKGLRPKTQET-ATS 250
            + L+      +  I  +   +K       ++K    I  I G E KGL  + +E     
Sbjct: 64  EEFLENTEDKHYYLI--TKFGEKNYSNFDFSNKNDEEIYFIFGRETKGLPKEFREKYNNQ 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   +++LN+SN AA+ +Y     
Sbjct: 122 CLRIPMSDKVRSLNLSNTAALIIYEALRQ 150


>gi|225020559|ref|ZP_03709751.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679757|ref|ZP_07402567.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           matruchotii ATCC 14266]
 gi|224946689|gb|EEG27898.1| hypothetical protein CORMATOL_00566 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660377|gb|EFM49874.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           matruchotii ATCC 14266]
          Length = 178

 Score = 70.5 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P N G  +R          +        +   L ++     +        NL
Sbjct: 12  IIFDQPCIPPNTGNAIRLCANTGATLHLAGPLGFNLKDKNLKRAGLDYHDFANVQVYKNL 71

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            +    +     +    SS                L+ G E  GL          T +  
Sbjct: 72  QNCFDTLPEHQHRVFAFSSHGTTTHTDITYRFGDVLLFGTEPTGLDESALHHPRITEIVR 131

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M   I+++N++NAA+VA+Y       
Sbjct: 132 IPMRPGIRSMNLANAASVAIYEVWRQLG 159


>gi|221065310|ref|ZP_03541415.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           KF-1]
 gi|220710333|gb|EED65701.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           KF-1]
          Length = 164

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E   + ++     E+    R ++ 
Sbjct: 4   IVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +   +++ S  P           L+ G+E KGL P+ +          
Sbjct: 64  DAFIDSCQPRRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPNEQRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 124 LPMLASQRSLNLSNAVAVTVFEAWRQ 149


>gi|332638007|ref|ZP_08416870.1| hypothetical protein WcibK1_04874 [Weissella cibaria KACC 11862]
          Length = 197

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 67/162 (41%), Gaps = 14/162 (8%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP-------SESAVLAKSASG 182
           R  +++ ++ +++   N  + +R++ AF    +I     +P              + + G
Sbjct: 34  RRGEMISIMQNLSHDFNKASAVRNSNAFGMRKLIFLNPENPAIPDAPEGIKKWDRRGSLG 93

Query: 183 AL--EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK---KPLEQEIKNDKIALILGAEG 237
               EHI + R+++      ++H+ G+    + +      + L       K A + G E 
Sbjct: 94  TQNYEHIEHRRVTDYQAVFDQLHADGYTIYAVDNTPGYQPQSLYNVTFPAKSAFLFGEER 153

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA--LYITQ 277
            GL       A +M ++   G ++++NVS A  +    Y +Q
Sbjct: 154 LGLADDLIAAADAMIYIPQYGSVRSINVSVAHGIIAAFYASQ 195


>gi|91792812|ref|YP_562463.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
           OS217]
 gi|91714814|gb|ABE54740.1| RNA methyltransferase TrmH, group 1 [Shewanella denitrificans
           OS217]
          Length = 259

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 18/161 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        +   +     +   +A SA  +       R+ +L
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSNLYLAEPKVEPDGQSIALSAGASDILKHLTRVDSL 66

Query: 196 TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +A+          I  S+             ++   L  E  N  +A++ G E  GL  
Sbjct: 67  AEAIADCS----LVIATSARSRTLDWPMLDPREAGIKLTAEALNGPVAIVFGRENNGLSN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
           +  ++      +       +LN++ A  +  Y  +  H A+
Sbjct: 123 EELQSCQFHVAIPANPEYSSLNLAQAVQIICYEARVAHLAQ 163


>gi|310658411|ref|YP_003936132.1| rRNA methylase [Clostridium sticklandii DSM 519]
 gi|308825189|emb|CBH21227.1| putative rRNA methylase [Clostridium sticklandii]
          Length = 151

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R+    +    +        +   L ++    ++ +      +  + ++   
Sbjct: 8   PQNTGNIIRTCACINARLHLIKPMGFSMDEKQLKRAGLDYMDLVSINYYDSFEELIEDKD 67

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGI--I 260
              F        +KK   +    D+  ++ G E KGL  +       +   + M  +  +
Sbjct: 68  INKFYFFTT--KAKKNHTEATYEDESYIVFGKETKGLSQEILSLNPNNNVRIPMLNMDRV 125

Query: 261 KALNVSNAAAVALYITQNHF 280
           ++LN+SN+ A+A Y      
Sbjct: 126 RSLNLSNSVAIAAYEAIRQI 145


>gi|153869173|ref|ZP_01998846.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
 gi|152074284|gb|EDN71155.1| tRNA/rRNA methyltransferase, SpoU [Beggiatoa sp. PS]
          Length = 241

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHI-PYIRIS 193
           ++L  +  P NIGA  R+        + +   ++ PS  A     ASGA + +   +   
Sbjct: 7   IILVGITHPGNIGAAARAMKTMGLSHLRLVQPKHFPSAEATAR--ASGADDLLSNALLFD 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSK-------KPLEQEIK----NDKIALILGAEGKGLRP 242
           N  D+L+  H       G S+  +        P+    K       +AL+ G E  GL  
Sbjct: 65  NFEDSLKDCH----LVFGTSTRQRMIAWPVLTPIACAEKALECPKPVALVFGREQSGLTN 120

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           K  +    +  +       +LNV+ A  +  Y  + 
Sbjct: 121 KELDLCNYLVQIPTNSEFNSLNVAAAVQILSYELRK 156


>gi|154338423|ref|XP_001565436.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062485|emb|CAM42347.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 517

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 54/219 (24%)

Query: 117 ETAPLLSPTLDAV---RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            T P ++  LD     R  + ++VL  +  P N+GA+LR+A     D ++     +    
Sbjct: 261 ATGPQVAQPLDNAFSHRALEAMLVLVGLRIPSNVGALLRAAADMGYDAVVLVN-CADPTQ 319

Query: 174 AVLAKSASGALEH--IPYIRISNLTDALQKMH--------------------------SW 205
             + +++ G      +          A   +                           + 
Sbjct: 320 EKVLRASDGTALSPALRIYETETTEQACVSLLSSIAAQHYLMPFLAVPSQEVEPAFEVAK 379

Query: 206 GFQTI---------------GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT- 249
            F                    +  S              +ILG+E +GLR  + +    
Sbjct: 380 RFHVYNARNKEAAASPVSRGAAAGHSDDLSAPPPPQLGAMVILGSEARGLRDLSGKWGVP 439

Query: 250 -SMAHLHMPG-IIKALNVSNAAAVALYITQ----NHFAK 282
             +  L +P  ++ + NVS A +V +++ +    +HF +
Sbjct: 440 YQLVTLPLPNPMVDSFNVSVAGSVLMHLFRPSAASHFTR 478


>gi|15827131|ref|NP_301394.1| tRNA/rRNA methyltransferase [Mycobacterium leprae TN]
 gi|221229609|ref|YP_002503025.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
 gi|13092679|emb|CAC29927.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae]
 gi|219932716|emb|CAR70512.1| putative tRNA/rRNA methyltransferase [Mycobacterium leprae Br4923]
          Length = 158

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R+A    C   +         +  L ++     +       ++L++A   + 
Sbjct: 16  PPNTGNAIRTAAVTGCALHLVEPIGFDLSNPKLRRAGLDYHDLASVTVHTSLSEAWNALS 75

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    S+ +              L+ G E  GL   T      T    + M    +
Sbjct: 76  PA--RVFAFSTLANTLFTDVSYQAGDVLMFGPEPTGLDAATLADDHITQQVRIPMLSGRR 133

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNAAAVA+Y     
Sbjct: 134 SLNLSNAAAVAVYEAWRQ 151


>gi|116872332|ref|YP_849113.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741210|emb|CAK20332.1| RNA methyltransferase, TrmH family, group 2 [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 169

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 14/155 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      +L
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ----ETA 248
            +  +   + G +   ++   +        +D       + G E  GL  +      E  
Sbjct: 65  DEFFE--KNAGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDELLQENEENC 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
                + M   I++LN+SN AAV  Y    Q  F 
Sbjct: 123 ---LRIPMTDHIRSLNLSNTAAVLAYEALRQQQFG 154


>gi|299534093|ref|ZP_07047445.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           S44]
 gi|298718002|gb|EFI59007.1| RNA methyltransferase, TrmH family, group 2 [Comamonas testosteroni
           S44]
          Length = 164

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E   + ++     E+    R ++ 
Sbjct: 4   IVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRHMRRAGLDYHEYANVARHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   +++ S  P           L+ G+E KGL P+ +          
Sbjct: 64  DALLETCQPQRERMFAMTTHSSSPAHAMEFKAGDWLVFGSESKGLPPEVRAQFPNEQRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 124 LPMLASQRSLNLSNAVAVTVFEAWRQ 149


>gi|291279760|ref|YP_003496595.1| rRNA methylase [Deferribacter desulfuricans SSM1]
 gi|290754462|dbj|BAI80839.1| rRNA methylase [Deferribacter desulfuricans SSM1]
          Length = 157

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 4/145 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++ L     P N G I R         ++  +         L ++      ++ +  I 
Sbjct: 1   MIVALFEPEIPQNTGNIARLCAVTDTKLLLVGRLGFSISDKYLKRAGMDYWNYLDWEWIK 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQET-AT 249
           ++ +   K ++  +    +S   KK   +  +    +K  LI G E  GLR   +   + 
Sbjct: 61  SINEFFDKYNNKEYSYFFISKFGKKYYTEISREFNFNKSILIFGNESYGLREDIRNLYSD 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALY 274
            +  + M   +++LN+SN+ A+ +Y
Sbjct: 121 RLYRIPMKEGMRSLNLSNSVAIVVY 145


>gi|331664150|ref|ZP_08365060.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA143]
 gi|331059949|gb|EGI31926.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           TA143]
          Length = 122

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 2   RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 61

Query: 100 TIDKIVGKEAVHQGLALETAPLLSPTLDA----VRNSQLLMVLDHVNDPHNIGAILRSAV 155
            + K  G E  H G+          T+            ++ L++ ++PHN+G ++RS  
Sbjct: 62  ELTKASGTE-HHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCA 120

Query: 156 AF 157
            F
Sbjct: 121 HF 122


>gi|296391977|ref|ZP_06881452.1| putative rRNA methylase [Pseudomonas aeruginosa PAb1]
 gi|313110168|ref|ZP_07796068.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
 gi|310882570|gb|EFQ41164.1| putative rRNA methylase [Pseudomonas aeruginosa 39016]
          Length = 153

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ +     +    ++   +   +       A + G E +GL    +          
Sbjct: 64  QSCLEALGQP--RLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDRRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  AV +Y       
Sbjct: 122 LPMREGCRSLNLSNTVAVTVYEAWRQLG 149


>gi|229489465|ref|ZP_04383328.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus
           erythropolis SK121]
 gi|229323562|gb|EEN89320.1| RNA methyltransferase, TrmH family, group 2 [Rhodococcus
           erythropolis SK121]
          Length = 166

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R      C+  +            L ++     +        NLT A + + 
Sbjct: 24  PPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVHENLTAAWEAVT 83

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAHLHMPGIIK 261
               +    ++ +              L+ G E  GL  +    E  T    + M    +
Sbjct: 84  PA--RVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEVLADEHVTERLRIPMLPGRR 141

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNAAA+  Y     
Sbjct: 142 SLNLSNAAALVTYEAWRQ 159


>gi|225867944|ref|YP_002743892.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701220|emb|CAW98160.1| SpoU rRNA methylase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 181

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDIRFYDHL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLR-PKTQETATSMA 252
            + L +        I  S  + +    +  ND+ +   + G E  GL  P  ++ A    
Sbjct: 79  DEFLAQCDGS-LHVI--SKFADQVYSDKDYNDRQSHYFLFGREDTGLPEPFMRQYADRAL 135

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNHFA 281
            + M    +++LNVSNA  V +  Y      A
Sbjct: 136 RIPMNDEHVRSLNVSNA--VCMIVYEALRQQA 165


>gi|281355511|ref|ZP_06242005.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
 gi|281318391|gb|EFB02411.1| tRNA/rRNA methyltransferase (SpoU) [Victivallis vadensis ATCC
           BAA-548]
          Length = 157

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G I R  V+      +        E   + ++      H+     
Sbjct: 3   PFNIVLVAPEIPQNTGTIGRLCVSTETRLHLVRPLGFSLEDKYVKRAGMDYWPHLDLTIY 62

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSM 251
            N  + L+K        I      +             L+ G E  GL P+  +   + +
Sbjct: 63  ENWEEFLKKNPEANLLFIST--KGETCFWDAQYRPGDYLVFGRESSGLPPEFYDRYRSRL 120

Query: 252 AHLHMPGIIK-ALNVSNAAAVALYITQN 278
             + M G    +LN++NAA++ LY    
Sbjct: 121 YRIPMNGRFHRSLNLANAASIVLYEALR 148


>gi|312958452|ref|ZP_07772972.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
 gi|311286995|gb|EFQ65556.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
          Length = 151

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+    R ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-SMAH 253
              L+ +     +    ++   +P       +  A + G E +GL  +  +         
Sbjct: 64  ASCLESLGHP--RLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPDGHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  AVA+Y       
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEGWRQLG 149


>gi|296168816|ref|ZP_06850498.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896519|gb|EFG76166.1| SpoU rRNA methylase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 154

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R+A A  C+  +            L ++     +        +L  A + + 
Sbjct: 12  PPNTGNAIRTAAATGCELHLVEPLGFDLSEPQLRRAGLDYHDLASVTVHPSLQAAWEALA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
               +    ++ S              L+ G E  GL   T   A  T    + M    +
Sbjct: 72  PA--RVFAFTAQSTTAFADVRYRPGDVLLFGPEPTGLDAATLADAHITERVRIPMLAGRR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNAAAVA+Y     
Sbjct: 130 SLNLSNAAAVAVYEAWRQ 147


>gi|70944707|ref|XP_742256.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521130|emb|CAH74309.1| hypothetical protein PC000031.00.0 [Plasmodium chabaudi chabaudi]
          Length = 867

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 3/148 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++   ++   N+  + R+   F+   ++ +      +     K +S A + +  
Sbjct: 720 KKNNLIVIASLIDKVPNLAGLCRTCEIFNVKKLLLSNINIVKDFQ-FQKISSTANKWMNI 778

Query: 190 IR-ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                             +  IGL  ++  K L   I  +K  LILG E +GL       
Sbjct: 779 QELKKKDIIKYLIKKKKKYSIIGLEQTNDSKRLNDFIFPEKCILILGDEKEGLPSSILLL 838

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 +   GII++LNV  +AA+ +Y 
Sbjct: 839 LHHCVEIPGHGIIRSLNVHVSAAITIYE 866


>gi|120597274|ref|YP_961848.1| RNA methyltransferase [Shewanella sp. W3-18-1]
 gi|146294582|ref|YP_001185006.1| RNA methyltransferase [Shewanella putrefaciens CN-32]
 gi|120557367|gb|ABM23294.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp.
           W3-18-1]
 gi|145566272|gb|ABP77207.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           putrefaciens CN-32]
          Length = 154

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +     R  +    L+ M   
Sbjct: 14  NTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKDFDAFLEAM--T 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     E+        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMAIIESIPTEQRLRIPMAATSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQLG 149


>gi|187927322|ref|YP_001897809.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|309779977|ref|ZP_07674731.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
           5_7_47FAA]
 gi|187724212|gb|ACD25377.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia pickettii
           12J]
 gi|308921336|gb|EFP66979.1| RNA methyltransferase, TrmH family, group 2 [Ralstonia sp.
           5_7_47FAA]
          Length = 156

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +      P E A + ++     E+      ++ 
Sbjct: 4   VILVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              L+       +   L++    P            + G+E +GL  + +E   A+    
Sbjct: 64  DAFLRDAQPDPTRMFALTTRGSTPFASVAFQPGDWFVFGSETRGLSEERREWFPASQRIR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV ++    QN FA
Sbjct: 124 LPMRPDNRSLNLSNTVAVVVFEAWRQNGFA 153


>gi|34557814|ref|NP_907629.1| putative RNA methylase [Wolinella succinogenes DSM 1740]
 gi|34483532|emb|CAE10529.1| PUTATIVE RNA METHYLASE [Wolinella succinogenes]
          Length = 153

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 2/148 (1%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L +VL     P N G I R   A      +            + ++     EH+     
Sbjct: 2   KLQIVLVEPRIPQNTGNIGRLCAATQSALHLIHPLGFTLSQKEIKRAGMDYWEHLELYEW 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
           S+L +A  + H +G     L++ +K+   +        L  G E  GL     E    +M
Sbjct: 62  SSL-EAFTEAHPFGESHFLLTTKAKRAYFEASLPPSAYLYFGREDAGLPQVLLEAHPQAM 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN++ A  + LY     
Sbjct: 121 LKIPMKEGNRSLNLATATGIVLYEAIRQ 148


>gi|325846711|ref|ZP_08169626.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481469|gb|EGC84510.1| RNA methyltransferase, TrmH family, group 2 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 152

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G I R+ V       +         +  L K+     + +  +   +L
Sbjct: 4   IVLISPEHPGNVGNISRTCVLTESRLHLIRPFKFDFSNKSLKKAGIDYWDKLDLVVHDSL 63

Query: 196 TDALQKMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +    +       I   SD   +    +          I G E +G+  +  +      
Sbjct: 64  DEFYTYVKDKNIYLIETGSDKNYADISYKDGDY-----FIFGREKEGIEKEILDKYKEKI 118

Query: 253 H-LHMPGIIK-ALNVSNAAAVALYI--TQNHF 280
           + + M   +  +LN++N+ A+ LY    QN+F
Sbjct: 119 YTIPMTNKLNRSLNLANSVAIVLYEGLRQNNF 150


>gi|33863403|ref|NP_894963.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
 gi|33640852|emb|CAE21307.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 249

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 18/165 (10%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            +R+ Q  +VL     P N+G++ R    F    +               + A   +  +
Sbjct: 4   DIRSIQTTVVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADPEARRMAVHGVAML 63

Query: 188 PYI-RISNLTDALQKMHSWGFQTIGL------------SSDSKKP-LEQEIKNDKIALIL 233
               + S L DA+   H    + +              + +   P L + +    +AL+ 
Sbjct: 64  KQAKQFSCLLDAVADCH----RVVASCGRLDHGNIPLQTPEQAVPWLLESMSAAPVALVF 119

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G E +GL  +  + A  +  LH      +LN+S+A A+ L+  Q 
Sbjct: 120 GREDRGLTNEELQLAQRVLTLHSSHGYPSLNLSHAVAIVLHELQR 164


>gi|255654586|ref|ZP_05399995.1| putative RNA methylase [Clostridium difficile QCD-23m63]
 gi|296449360|ref|ZP_06891142.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296880706|ref|ZP_06904658.1| RNA methyltransferase [Clostridium difficile NAP07]
 gi|296261830|gb|EFH08643.1| RNA methyltransferase [Clostridium difficile NAP08]
 gi|296428279|gb|EFH14174.1| RNA methyltransferase [Clostridium difficile NAP07]
          Length = 156

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 7/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+  A      +        +   L +      +        + 
Sbjct: 5   IVLVEPEIPQNTGNIIRTCAATGSTLHLVKPLGFSLDDKHLKRCGLDYWDIADIQYYDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            +  +K  +  +     ++ +K+        +   ++ G E KGL     +    +   +
Sbjct: 65  EELQEKYPNSKY--FFSTTKAKQSHSDVKYEENCFIVFGKETKGLPETLLKANMDTCIRV 122

Query: 255 HMPGIIK---ALNVSNAAAVALYITQNHFA 281
            M   ++   +LN+SN+ A+ +Y       
Sbjct: 123 PML-DVEKARSLNLSNSVAIVVYEALRQIG 151


>gi|26991728|ref|NP_747153.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24986832|gb|AAN70617.1|AE016704_8 RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
           KT2440]
          Length = 157

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 8   VILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRHESL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ + +   +    ++    P  +       A + G E +GL  +  ++  A     
Sbjct: 68  AGCLESLGNP--RLFAFTTKGSHPFHEVAFQPGDAFLFGPESRGLPAEVLDSLPAEHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV +Y    QN FA
Sbjct: 126 LPMRPGCRSLNLSNTVAVTVYEAWRQNGFA 155


>gi|148550127|ref|YP_001270229.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148514185|gb|ABQ81045.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida F1]
 gi|313501027|gb|ADR62393.1| RNA methyltransferase [Pseudomonas putida BIRD-1]
          Length = 153

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRHESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ + +   +    ++    P  +       A + G E +GL  +  ++  A     
Sbjct: 64  AGCLESLGNP--RLFAFTTKGSHPFHEVAFQPGDAFLFGPESRGLPAEVLDSLPAEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV +Y    QN FA
Sbjct: 122 LPMRPGCRSLNLSNTVAVTVYEAWRQNGFA 151


>gi|66824597|ref|XP_645653.1| hypothetical protein DDB_G0271370 [Dictyostelium discoideum AX4]
 gi|60473876|gb|EAL71815.1| hypothetical protein DDB_G0271370 [Dictyostelium discoideum AX4]
          Length = 310

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI 187
           RN + ++V +++++P N  A++RSA A       +I       S      + + G+ + +
Sbjct: 51  RNKRFIIVCENLDNPGNFAAVVRSADAIGIQNLCLINEGGNLDSNFEKYDRVSLGSGKWV 110

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKK 218
              +  + T  ++K+   G+        +  
Sbjct: 111 TVNKYYSTTKCIEKLKEQGYSIWASDLSATA 141



 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++KIAL+ G E  G+    +  +    +L M G +++ N+S + A+ L
Sbjct: 211 DEKIALVFGNESNGISELMRSLSDRRFYLPMVGFVESFNISVSVAMTL 258


>gi|157376009|ref|YP_001474609.1| RNA methyltransferase [Shewanella sediminis HAW-EB3]
 gi|157318383|gb|ABV37481.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sediminis
           HAW-EB3]
          Length = 254

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL   + P NIG+  R+        +   +     +   +A  A+GA + + + + + +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVAPDGHSVA-LAAGASDILKHAVTVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           + +A+          I  S+ S+                        +A++ G E  GL 
Sbjct: 66  VAEAIADCS----LVIATSARSRTLDWPMLEPREAGEKLVASALTGPVAIVFGRENNGLS 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
            +  +       +       +LN++ A  +  Y  +  H A+
Sbjct: 122 NEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQ 163


>gi|269218394|ref|ZP_06162248.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212253|gb|EEZ78593.1| RNA methyltransferase, TrmH family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 162

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R A        +        E + L ++     +       ++    L+++ 
Sbjct: 17  PGNTGAAIRLAACTGATLHLVEPLGFSFEDSHLKRAGLDYHDLADLRIHADFEALLRELP 76

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +    +  +          +  A + G E  GL          T+   + M   ++
Sbjct: 77  DS--RIFAFTGHTSNSFADVAYRETDAFLFGPEPTGLPADVIAHPAVTAAVRIPMMPHLR 134

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++N+A++ +Y     
Sbjct: 135 SLNLANSASIVVYEAWRQ 152


>gi|229817083|ref|ZP_04447365.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM
           20098]
 gi|229784872|gb|EEP20986.1| hypothetical protein BIFANG_02339 [Bifidobacterium angulatum DSM
           20098]
          Length = 275

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 65/211 (30%), Gaps = 56/211 (26%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF    +               K A 
Sbjct: 67  IKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQARRVHI-----VGPHKWNRKGAL 121

Query: 182 GALEHIPYIRISNLTDALQKMHSWGF---------------------------------- 207
               +       ++   ++  H+                                     
Sbjct: 122 MTELYQHVENHPSIAQLVECWHNRIAGEIAAARAEAGAAAFHAHEVAVHGDTAVVAAATA 181

Query: 208 ---------------QTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                          + I +       P+E      +  ++ GAEG GL  K  E A  +
Sbjct: 182 QVDAAEARIRELEASRVIAMDIIPGAVPMETYRFPKRCLMLFGAEGPGLSEKALELADDV 241

Query: 252 AHLHMPGIIKALNVSNAAAVALY-ITQNHFA 281
            ++   G ++++N   AAAV+++     H A
Sbjct: 242 VYISQFGSVRSINAGAAAAVSMHAWIAQHAA 272


>gi|225023964|ref|ZP_03713156.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC
           23834]
 gi|224942989|gb|EEG24198.1| hypothetical protein EIKCOROL_00831 [Eikenella corrodens ATCC
           23834]
          Length = 179

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 27  FSIVLYQPEIPPNTGNIIRLCANSGADLHLVKPLGFPLDSAKMKRAGLDYHEFARISLHE 86

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
              D L  +   G +   L++  +   +Q         + G E +GL     E       
Sbjct: 87  TFEDCLAAL--EGRRIFALTTKGRTRPDQAEFRPDDVFLFGPETRGLPAAILERLPENQK 144

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SN  AV LY     
Sbjct: 145 LRLPMLPGSRSMNLSNTVAVMLYEAWRQ 172


>gi|293602335|ref|ZP_06684781.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
 gi|292819097|gb|EFF78132.1| RNA methyltransferase [Achromobacter piechaudii ATCC 43553]
          Length = 156

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V   +  P N G  +R          +        + A + ++     E  P    
Sbjct: 3   HVILVCPEI--PPNTGNAIRLCANTGAQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L +AL    +       L++ +++ +           + G E  GL  + Q       
Sbjct: 61  DTLQEALDDTGADAGSIYALTTHAQRSVADIAFKPGDVFVFGRETAGLSDEHQAMFPPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149


>gi|260462582|ref|ZP_05810789.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
 gi|259031778|gb|EEW33047.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium opportunistum
           WSM2075]
          Length = 152

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 2/126 (1%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR A        I      P     L ++    LE     R  +          
Sbjct: 16  GNTGTILRFAACLGLGVDIIEPAGFPLSDKALRRAGMDYLEMAALTRHVDWDAFEDWRKV 75

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
              + + LS+ +  P  +        L+ G E  G+     + A +   + M G  +++N
Sbjct: 76  HAKRLVLLSTKATAPYTEFAFARGDILLFGRESAGVPDPIHQAADARLTIPMQGGARSIN 135

Query: 265 V--SNA 268
           V  S A
Sbjct: 136 VALSVA 141


>gi|196231420|ref|ZP_03130279.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
 gi|196224756|gb|EDY19267.1| tRNA/rRNA methyltransferase (SpoU) [Chthoniobacter flavus Ellin428]
          Length = 151

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  +A      +            L ++     + +      + 
Sbjct: 4   VVLVEPEIPPNTGNIGRLCLATDTHLHLVKPLGFSLSDKELKRAGLDYWKDVRVSVWESY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            + LQ   S   +   L++  ++P   E   D   L+ G E KGL     E        +
Sbjct: 64  AE-LQAAQSADARYFYLTTKVQRPYWDEQFRDGDFLVFGRETKGLPEPLLESNRDRCLTI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M    ++LN++ +  + LY       K
Sbjct: 123 PMTPQTRSLNLATSVGIVLYEAVRQLRK 150


>gi|2222703|emb|CAB09926.1| rRNA methylase [Mycobacterium leprae]
          Length = 169

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R+A    C   +         +  L ++     +       ++L++A   + 
Sbjct: 27  PPNTGNAIRTAAVTGCALHLVEPIGFDLSNPKLRRAGLDYHDLASVTVHTSLSEAWNALS 86

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    S+ +              L+ G E  GL   T      T    + M    +
Sbjct: 87  PA--RVFAFSTLANTLFTDVSYQAGDVLMFGPEPTGLDAATLADDHITQQVRIPMLSGRR 144

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNAAAVA+Y     
Sbjct: 145 SLNLSNAAAVAVYEAWRQ 162


>gi|194398514|ref|YP_002037156.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae G54]
 gi|194358181|gb|ACF56629.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae G54]
          Length = 167

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 65  EDFISQMKG---KLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPDKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|330684735|gb|EGG96430.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU121]
          Length = 156

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 52/145 (35%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     EH+      ++
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHEDI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
               +  +   +        +    +    N+    I G E  GL    ++    +   +
Sbjct: 65  ESFFESTNGEYYLLTKFGKQTYSDFDFSDTNNNHYFIFGRETTGLPDWVKDKYQDTALRI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+SN AA+ +Y     
Sbjct: 125 PMSDKIRSLNLSNTAALLIYEALRQ 149


>gi|224005541|ref|XP_002291731.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972250|gb|EED90582.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 416

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM--H 203
           N+G + RSA       + T        S       +     +P I + + T   +     
Sbjct: 274 NVGTLWRSAFQLGASVLYTIGGRYKYSSTDTLNVPA----RVPLIELDDWTSFAEWAAPR 329

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL--HMPGIIK 261
           S  +  I +      PL+  +       ILG+E  G+          +  L   M G   
Sbjct: 330 SAVWVVIEM---GGTPLKDFVHPRNAIYILGSEDHGVPKSVVRACREVVSLECEMYG--- 383

Query: 262 ALNVSNAAAVALYIT 276
           + NV+ A ++ +Y  
Sbjct: 384 SYNVAVAGSIVMYDR 398


>gi|226942627|ref|YP_002797700.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ]
 gi|226717554|gb|ACO76725.1| RNA methyltransferase TrmH, group 2 [Azotobacter vinelandii DJ]
          Length = 153

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R ++L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANTGCSLHLIDPLGFELDDKRLRRAGLDYHEYATLKRHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+ +     +    ++   +P          A + G E +GL  + +E+        
Sbjct: 64  PSCLESLGRP--RLFAFTTKGSQPYHSVAYRRGDAFLFGPESRGLPQEVRESLPPEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           L M    ++LN+SN  AVA+Y      
Sbjct: 122 LPMRSACRSLNLSNTVAVAVYEAWRQL 148


>gi|119946907|ref|YP_944587.1| RNA methyltransferase [Psychromonas ingrahamii 37]
 gi|119865511|gb|ABM04988.1| RNA methyltransferase, TrmH family, group 2 [Psychromonas
           ingrahamii 37]
          Length = 154

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 4/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GAI+R      C   +        +   + ++     E     R  N  D LQ + 
Sbjct: 12  PQNTGAIIRLCANTGCVLHLIEPLGFDLDEKKVRRAGLDYHELTHVYRHKNYNDFLQAV- 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
             G +    ++ +     Q        L+ G E +GL  +  +         + M    +
Sbjct: 71  -SGKRIFACTTKTTTFHSQANFQADDVLLFGPETRGLPGEILDALPLEQKLRIPMRAESR 129

Query: 262 ALNVSNAAAVALYITQNHF 280
           ++N+SNA +V +Y      
Sbjct: 130 SMNLSNAVSVFVYEAWRQL 148


>gi|256274094|gb|EEU09005.1| Trm3p [Saccharomyces cerevisiae JAY291]
          Length = 1436

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 5/152 (3%)

Query: 127  DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
            D V  S+L++V   V+ P N+  I R        G++T +             A  A   
Sbjct: 1279 DVVTRSELIVVSSLVDKPPNLRGICRLCDVLGV-GLLTVQDIKVKNHPQFKNVAVTADRW 1337

Query: 187  IPYIRI--SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEI-KNDKIALILGAEGKGLRP 242
            +P   +    +   ++     G+  IGL  +D    L+       K  ++LG E  G+  
Sbjct: 1338 MPMEEVALDEIASFMKGKKKEGYTLIGLEQTDKSVKLDNSFQFPKKSLILLGTEAFGIPG 1397

Query: 243  KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                       +   G+I+++N+  A AV ++
Sbjct: 1398 TLLSELDLCLEIQQFGVIRSMNIQTATAVIVH 1429


>gi|257876758|ref|ZP_05656411.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
 gi|257810924|gb|EEV39744.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC20]
          Length = 167

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      +L
Sbjct: 4   IVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPK-TQETATSM 251
              +  + +       +S  + +           D+   I G E  GL     +E A   
Sbjct: 64  AAFMDFLGAR--PLYLISKFANRVYSDVDYTADDDQF-FIFGKETTGLPESFMREHAEKC 120

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 121 LRIPMNDEHVRSLNLSNTAALIIYEVLRQ 149


>gi|257867865|ref|ZP_05647518.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257874194|ref|ZP_05653847.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
 gi|257801948|gb|EEV30851.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC30]
 gi|257808358|gb|EEV37180.1| RNA methyltransferase TrmH [Enterococcus casseliflavus EC10]
          Length = 167

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      +L
Sbjct: 4   IVLFEPQIPANTGNIARTCAATNTHLHLIEPLGFSTDDKQLKRAGLDYWHDVNITYHKDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPK-TQETATSM 251
              +  + +       +S  + +           D+   I G E  GL     +E A   
Sbjct: 64  AAFMDFLGAR--PLYLISKFANRVYSDVDYTADDDQF-FIFGKETTGLPESFMREHAEKC 120

Query: 252 AHLHMP-GIIKALNVSNAAAVALYITQNH 279
             + M    +++LN+SN AA+ +Y     
Sbjct: 121 LRIPMNDEHVRSLNLSNTAALIIYEVLRQ 149


>gi|227549929|ref|ZP_03979978.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227077945|gb|EEI15908.1| SpoU family rRNA methyltransferase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 169

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 4/161 (2%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +P LD    + L ++ D+   P N G  +R          +        +   L ++   
Sbjct: 6   APILDLWPVAHLHVIFDNPVIPPNTGNAIRMCAGSGATLHLVEPLGFTLDEKHLRRAGLD 65

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
             +    I   +L   L  +   G +    ++ +     +       AL+ G E  GL  
Sbjct: 66  YHDLANVIIHPDLDACLAAL--TGSRVFAFTTQASAYFHEIAYERGDALLFGTEPTGLPE 123

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   T    + M    +++N+SN+AAVA Y       
Sbjct: 124 SHAHHPRVTERVRIPMLPGRRSMNLSNSAAVATYEAWRQLG 164


>gi|218281555|ref|ZP_03487984.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989]
 gi|218217344|gb|EEC90882.1| hypothetical protein EUBIFOR_00549 [Eubacterium biforme DSM 3989]
          Length = 173

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ +A      +        +   L +S    ++        N 
Sbjct: 4   VVLYEPEIPQNTGNIIRTCMATGSRLHLIEPLGFSLDEKHLRRSGMDYIKDADIHIHKNW 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSM 251
              + +    H +     G    +    +   +   + L+LG E  G+  K  +    + 
Sbjct: 64  DAFVAENPCEHYYFMTRYG--KKAPSEFDFAKEEGDVYLVLGKESTGVDKKILKGHLDTC 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             L M    ++LN+SN AA+ +Y      
Sbjct: 122 MRLPMVANARSLNLSNCAAIIVYEVLRQL 150


>gi|262283231|ref|ZP_06060998.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
 gi|262261483|gb|EEY80182.1| rRNA methylase [Streptococcus sp. 2_1_36FAA]
          Length = 168

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 11/150 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 6   IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDISYYESL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETATSMA 252
            D ++KM     Q   +S  ++K   +E  +   K   + G E KGL  +  ++      
Sbjct: 66  EDFMEKMDG---QLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEFMRQHPEKAL 122

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YITQNH 279
            + M    +++LNVSN   V +  Y     
Sbjct: 123 RIPMNDQHVRSLNVSNT--VCMIVYEALRQ 150


>gi|157150281|ref|YP_001450942.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075075|gb|ABV09758.1| rRNA methylase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 168

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 11/150 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 6   IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDISYYESL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETATSMA 252
            D ++KM     Q   +S  ++K   +E  +   K   + G E KGL  +  ++      
Sbjct: 66  EDFMEKMDG---QLYLVSKFAEKVYSEEDFSKEGKHYFMFGREDKGLPEEFMRQHPEKAL 122

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YITQNH 279
            + M    +++LNVSN   V +  Y     
Sbjct: 123 RIPMNDQHVRSLNVSNT--VCMIVYEALRQ 150


>gi|307104610|gb|EFN52863.1| hypothetical protein CHLNCDRAFT_138347 [Chlorella variabilis]
          Length = 1710

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 4/132 (3%)

Query: 130  RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               +LL+V   +    N+  + R+   F   G++     + +        A  A   +P 
Sbjct: 1470 PRQELLVVASLLTKAPNLAGLARTCEVFRASGLVLPGL-AVTRLPEFKSIAVSAHLWLPL 1528

Query: 190  IRISN--LTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDKIALILGAEGKGLRPKTQE 246
            I +    L   LQ+  + G+  +GL   ++   L+      +  L+LG E +G+      
Sbjct: 1529 IEVPEAMLAAWLQRQAAQGWTLVGLEQSTESVQLQDFRFPRRTVLVLGREKEGIPSALLG 1588

Query: 247  TATSMAHLHMPG 258
                   +   G
Sbjct: 1589 LLDHSVEIPQLG 1600


>gi|148360047|ref|YP_001251254.1| TrmH family transporter RNA methyltransferase [Legionella
           pneumophila str. Corby]
 gi|148281820|gb|ABQ55908.1| RNA methyltransferase TrmH family, group 2 [Legionella pneumophila
           str. Corby]
          Length = 155

 Score = 70.1 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + N  + + L     P N G I+R          +        E   + ++     +   
Sbjct: 3   LENHMIHIALYQPEIPPNTGNIIRLCANSGAQLHLIHPLGFTLEDKQMRRAGLDYHQWAS 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +   +    LQ       +    S+  K             L+ G E  GL  +     
Sbjct: 63  ILHYESWQTFLQSHSQR--RLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ- 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            S   + M    ++LN+SNA A+ LY      
Sbjct: 120 YSTIRIPMRENNRSLNLSNAVAIILYEAWRQM 151


>gi|229587902|ref|YP_002870021.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
 gi|229359768|emb|CAY46618.1| putative RNA-methyl transferase [Pseudomonas fluorescens SBW25]
          Length = 151

 Score = 70.1 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+    R ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFDMDDKRLRRAGLDYHEYATLKRHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-SMAH 253
              L+ +     +    ++   +P       +  A + G E +GL  +  +         
Sbjct: 64  ASCLESLGHP--RLFAFTTKGSRPFHDASFAEGDAFLFGPESRGLPAEVLDALPDGHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           L M    ++LN+SN  AVA+Y      
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEGWRQL 148


>gi|29027480|gb|AAO61955.1| rRNA methylase [Aster yellows phytoplasma]
          Length = 78

 Score = 70.1 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH-MPGIIKALNV 265
            Q I ++  +          +  A ILG+E KG+         +   L  +   + +LNV
Sbjct: 1   MQIIAVTEKTDYICYNINYRNPTAFILGSEEKGISINYLSICNNRVKLPLIKNSLTSLNV 60

Query: 266 SNAAAVALYITQNHF 280
           S A    LY      
Sbjct: 61  SVACGAILYEAIRQR 75


>gi|254491074|ref|ZP_05104255.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga
           thiooxidans DMS010]
 gi|224463587|gb|EEF79855.1| RNA methyltransferase, TrmH family, group 2 [Methylophaga
           thiooxydans DMS010]
          Length = 157

 Score = 70.1 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        +   L ++     E       S+     Q   
Sbjct: 12  PPNTGNIIRLCANTGAQLHLIEPLGFALDDKRLRRAGLDYHEFANLKIHSDFAQFQQWQQ 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    ++ +++        D+  L+ G E +GL  +  +  TA     + M    +
Sbjct: 72  QR--RVFACTTKARQHHHDVQYQDEDILLFGPESRGLPAEVLDSLTAEFKIRIPMLPDSR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA  + LY       
Sbjct: 130 SLNLSNATGIILYQAWQQLG 149


>gi|296108132|ref|YP_003619833.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila
           2300/99 Alcoy]
 gi|295650034|gb|ADG25881.1| RNA methyltransferase, TrmH family, group 2 [Legionella pneumophila
           2300/99 Alcoy]
          Length = 149

 Score = 70.1 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 3/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   + ++     +    +   +    LQ   
Sbjct: 12  PPNTGNIIRLCANSGAQLHLIHPLGFTLEDKQMRRAGLDYHQWASILHYESWQTFLQSHS 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               +    S+  K             L+ G E  GL  +      S   + M    ++L
Sbjct: 72  QR--RLFCCSAKGKVKYSDVDYKADDILLFGPESCGLPQQILNQ-YSTIRIPMRENNRSL 128

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+ LY      
Sbjct: 129 NLSNAVAIILYEAWRQM 145


>gi|212633117|ref|YP_002309642.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3]
 gi|212554601|gb|ACJ27055.1| RNA methyltransferase TrmH, group 2 [Shewanella piezotolerans WP3]
          Length = 193

 Score = 70.1 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +        N    L+ M   
Sbjct: 54  NTGNIIRLIANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLANVSHHKNFESFLKAMQGK 113

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
             + +  ++   +P  +        L+ G E +GL     ++        + M    ++L
Sbjct: 114 --RIMACTTKGSRPHSELTFQQDDVLLFGPESRGLPADIIDSIPTEQRLRIPMMSTSRSL 171

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  Y      
Sbjct: 172 NLSNAVAIISYEAWRQL 188


>gi|163786061|ref|ZP_02180509.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales
           bacterium ALC-1]
 gi|159877921|gb|EDP71977.1| RNA methyltransferase, TrmH family, group 2 [Flavobacteriales
           bacterium ALC-1]
          Length = 151

 Score = 70.1 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R A+A      +            L ++     +H+  I  +++
Sbjct: 5   IVLIEPEIPNNTGNIGRLALATGSRLHLVKPFGFEINDKRLKRAGLDYWQHLEVIYYNSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
            D   K        + LSS  K         + + L+ G E  GL  P  ++    +  +
Sbjct: 65  DDFFLKNKDSIM--VFLSSQGKVSHWDINYTENMFLVFGKESVGLPKPLIEKHKDQLFKI 122

Query: 255 HMPGI-IKALNVSNAAAVALYITQNHF 280
            +    I++LN++NA ++ +Y      
Sbjct: 123 PLYSKDIRSLNLANAVSIIVYEGLRQL 149


>gi|225163934|ref|ZP_03726225.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
 gi|224801470|gb|EEG19775.1| tRNA/rRNA methyltransferase (SpoU) [Opitutaceae bacterium TAV2]
          Length = 161

 Score = 70.1 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 12/154 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R          +            L ++       +     ++ 
Sbjct: 4   IVLFQPEIPQNTGNIGRMCALTQSRLHLIHPLGFTITDRHLRRAGMDYWFSLDVHHHADW 63

Query: 196 TDALQKMHS---WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG----LRPKTQETA 248
              L   H+              + +        D   L+ G EG G    L  +     
Sbjct: 64  AAFLTSPHAPPRERLWLFTT--HATRRHWDAAFADGDGLVFGNEGHGAPAWLHDEIGAA- 120

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
                +      +++LN+S AA +A Y       
Sbjct: 121 -RRVTIPHANPDLRSLNLSTAAGIACYEALRQVG 153


>gi|284931509|gb|ADC31447.1| SpoU class rRNA methylase [Mycoplasma gallisepticum str. F]
          Length = 163

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 12/155 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL    DP N G I RS V F+    +              ++     +H+   + ++ 
Sbjct: 7   VVLYQPQDPRNAGNIARSCVGFNATLHLIHPFGFFITDERFKRAGLDYWDHLNLKQYADF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPL------EQEIKNDKIALILGAEGKGLRPKTQET-A 248
            D +++           +  +   L      E    + +I L+ G E  GL  +      
Sbjct: 67  DDFIKQNQIDD-NLFLFTKKANNYLSNINFKEYLDHDQRIYLVFGQETNGLPEQLLNKYQ 125

Query: 249 TSMAHLHMPGIIKALNVSNAAAVA-LYI--TQNHF 280
            ++  + M   I++ N++N+  +  LY    QN F
Sbjct: 126 NNLVKIPMHNAIRSFNLANSV-ICALYELSRQNQF 159


>gi|23098542|ref|NP_692008.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
 gi|22776768|dbj|BAC13043.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
          Length = 157

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ +A      +       ++S ++ ++     EH+      ++
Sbjct: 5   VVLFEPEIPANTGNIGRTCLATGVTLHLIHPLGFSTDSKMVRRAGLDYWEHVDVREYQSI 64

Query: 196 TDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSM 251
            D  +     GF  I   G           +   D+   + G E  G+  +         
Sbjct: 65  EDLYETYPDAGFYYIENFGT-KHYTDFDFSDSDMDQF-FVFGKESTGIPKELLIGKEDQC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             +HM   +++LN+SN +A+ +Y     
Sbjct: 123 LRIHMNDKVRSLNLSNTSAIIIYEVLRQ 150


>gi|213964878|ref|ZP_03393077.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           amycolatum SK46]
 gi|213952414|gb|EEB63797.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           amycolatum SK46]
          Length = 179

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 2/155 (1%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +++    ++ D    P N G  +R          +        +   L ++     + 
Sbjct: 18  DWIKSHTCHVLFDRPVIPPNTGNAIRMCAGSGAMLHLAKPLGFNFDDKNLRRAGLDYHDL 77

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                  ++  AL+   S G +    ++ +          +   L+ G E  GL     +
Sbjct: 78  ADVRIHDSIDQALETFASQGCRIFAFTAHADTWHTDIEYTNTDVLLFGPEPTGLEQSVLD 137

Query: 247 --TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               T +  + M    +++N+SNAAAVA Y     
Sbjct: 138 DPRITQLIRIPMLPARRSMNLSNAAAVAAYEVWRQ 172


>gi|119473213|ref|ZP_01614899.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119444544|gb|EAW25860.1| putative tRNA/rRNA methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 154

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R ++ 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGFSLHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHASF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+K      +    ++   +   +        L+ G E +GL  +  +         
Sbjct: 64  EAYLEKCKPK--KVYACTTKGSQFHHEARYEAGDCLVFGPETRGLPDEMIQALPNEQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA AV +Y +     
Sbjct: 122 IPMQPNSRSMNLSNAVAVFVYESWRQLG 149


>gi|315611850|ref|ZP_07886769.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
 gi|315316028|gb|EFU64061.1| TrmH family RNA methyltransferase [Streptococcus sanguinis ATCC
           49296]
          Length = 167

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDNL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     Q   +S  ++K   +     ++    + G E KGL     +E   +  
Sbjct: 65  ADFMSQMKG---QVYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPETAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|331698389|ref|YP_004334628.1| tRNA/rRNA methyltransferase SpoU [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953078|gb|AEA26775.1| tRNA/rRNA methyltransferase (SpoU) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 167

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 10/143 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM- 202
           P N GAI+R A        +        ++  + ++     E        +L  A   + 
Sbjct: 12  PQNTGAIIRLAANTGAQLHLVEPLGFSLDARHVRRAGLDYHELADVQVHRDLDAAWAALL 71

Query: 203 --HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPG 258
                 F T G    +    E+        L+ G E  GL  + Q     T    L M  
Sbjct: 72  PARVHAFTTTGTEHHTDVDYERGD-----VLLFGRESTGLPAEVQAAPQVTDRVRLPMIP 126

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
             ++LN++NA +VA+Y       
Sbjct: 127 GSRSLNLANAVSVAVYEAWRRLG 149


>gi|91776534|ref|YP_546290.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus
           KT]
 gi|91710521|gb|ABE50449.1| RNA methyltransferase TrmH, group 2 [Methylobacillus flagellatus
           KT]
          Length = 154

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R     +    +        E   L ++     E+   +   + 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANSNTRLHLVKPLGFELEDKQLKRAGLDYHEYASLVVHEDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
               Q +   G +T  L++                 + G E +GL  + +   +      
Sbjct: 64  EACKQAL--AGRRTFALTTKGSTRHSDIRFLPGNVFVFGPETRGLPEEIRAEFSPEYRIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+AA+ LY     
Sbjct: 122 LPMMPQSRSLNLSNSAAILLYEAWRQ 147


>gi|54307450|ref|YP_128470.1| rRNA methylase [Photobacterium profundum SS9]
 gi|46911870|emb|CAG18668.1| putative rRNA methylase, SpoU family [Photobacterium profundum SS9]
          Length = 159

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       D  +        E   L ++     +     R  +     + M   
Sbjct: 19  NTGNIIRLCANCGADLHLIEPLGFDLEEKKLRRAGLDYHDLAHVHRHKDFAAFKEAM--A 76

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKAL 263
           G +    ++ +          +   LI G E +GL     E+        + M    ++L
Sbjct: 77  GRRLFACTTKTTNYHTNAQFAEGDVLIFGPETRGLPADFIESLPLEQRLRIPMHPDSRSL 136

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNAAA+  Y       
Sbjct: 137 NLSNAAAIIGYEAWRQLG 154


>gi|319946468|ref|ZP_08020705.1| RNA methyltransferase [Streptococcus australis ATCC 700641]
 gi|319747436|gb|EFV99692.1| RNA methyltransferase [Streptococcus australis ATCC 700641]
          Length = 180

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 12/154 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 17  VVLYQPQIPQNTGNIARTCAATNAPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPK-TQETATSMA 252
            + ++   + G +   +S  + +       ND +    I G E KGL     +  A    
Sbjct: 77  DEFMEA--TTGGKVHLVSKFADQTYSNVNYNDNLEHYFIFGREDKGLPEDFMRLHAEKAI 134

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q  FA
Sbjct: 135 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQEFA 166


>gi|192362257|ref|YP_001982863.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190688422|gb|ACE86100.1| RNA methyltransferase, TrmH family, group 2 [Cellvibrio japonicus
           Ueda107]
          Length = 154

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R A    C   +        +   + ++     E       ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLAANTGCQLHLIEPLGFNLDEKSVTRAGMDYAETQDVRIHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L  +     +   LS+   +            L+ G E +GL    +E+  A  +  
Sbjct: 64  EHFL--VQEQPTRLFALSTKGSQCHSDAQFAAGDYLLFGPESRGLPADIRESLPANQVLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA AV +Y       
Sbjct: 122 IPMAANSRSMNLSNAVAVMVYEAWRQLG 149


>gi|269798386|ref|YP_003312286.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           DSM 2008]
 gi|282850623|ref|ZP_06260002.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           ATCC 17745]
 gi|294794116|ref|ZP_06759253.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           3_1_44]
 gi|269095015|gb|ACZ25006.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           DSM 2008]
 gi|282580116|gb|EFB85520.1| RNA methyltransferase, TrmH family, group 2 [Veillonella parvula
           ATCC 17745]
 gi|294455686|gb|EFG24058.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           3_1_44]
          Length = 161

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +  +K     +     +  +K    +        L+ G E +GL     +    +   +
Sbjct: 63  QELYEKYPDRRYF-YATT-KAKHTHSEVKYEIGDMLVFGPETRGLPESLLDGKEDTCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SNA A+  Y      
Sbjct: 121 PMVDEARSLNLSNAVAIIAYEGMRQL 146


>gi|218781768|ref|YP_002433086.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763152|gb|ACL05618.1| tRNA/rRNA methyltransferase (SpoU) [Desulfatibacillum alkenivorans
           AK-01]
          Length = 158

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 2/145 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N G I R+ +    D  +        +S+ + ++     E +      + 
Sbjct: 5   IVLVEPEIHWNTGNIGRTCLGAGADLHLIKPLGFSLDSSHVKRAGLDYWEKVRLHTWGSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMA-H 253
            +   KM +   +T+  S    +P      +  ++ L+LGAE +GL     +       H
Sbjct: 65  DEFSAKMQNAPDETLLFSKLGARPFWDMPSHMTRLFLVLGAETRGLPQGVLDQYPGNVYH 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           + +   I++LN+S  A + LY +  
Sbjct: 125 VPITNEIRSLNLSTTAGIVLYESMR 149


>gi|146309256|ref|YP_001189721.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145577457|gb|ABP86989.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas mendocina
           ymp]
          Length = 154

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R ++L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCQLHLIEPLGFELDDKRLRRAGLDYHEYATLKRHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L  +     +    ++   +P  +       A + G E +GL  + +          
Sbjct: 64  QSCLDSLGQP--RLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEVRNALPPEQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFAK 282
           L M    ++LN+SN  AV +Y    QN FA+
Sbjct: 122 LPMRAGCRSLNLSNTVAVTVYEAWRQNGFAE 152


>gi|256830648|ref|YP_003159376.1| tRNA/rRNA methyltransferase SpoU [Desulfomicrobium baculatum DSM
           4028]
 gi|256579824|gb|ACU90960.1| tRNA/rRNA methyltransferase (SpoU) [Desulfomicrobium baculatum DSM
           4028]
          Length = 158

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 2/136 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R   A +    +        +   L ++      H+      +    L+   
Sbjct: 11  PPNTGTIARLCAASTTRLNLIEPLGFSLDDKYLKRAGLDYWPHVDKRIWPSWPAFLEG-R 69

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
             G + +  S+       +        ++LG E +GL P+    A  +  + + G ++++
Sbjct: 70  DPG-RLVFTSARQGVAYHRFSFRADDIIVLGPETRGLPPEVLHDAQDLIRIPIWGEVRSV 128

Query: 264 NVSNAAAVALYITQNH 279
           N++NAAAV LY     
Sbjct: 129 NLANAAAVLLYEAYRQ 144


>gi|313471800|sp|B8CHC9|TRML_SHEPW RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 153

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +        N    L+ M   
Sbjct: 14  NTGNIIRLIANNGCQLHLIEPLGFDLEDKKLRRAGLDYADLANVSHHKNFESFLKAMQGK 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
             + +  ++   +P  +        L+ G E +GL     ++        + M    ++L
Sbjct: 74  --RIMACTTKGSRPHSELTFQQDDVLLFGPESRGLPADIIDSIPTEQRLRIPMMSTSRSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  Y      
Sbjct: 132 NLSNAVAIISYEAWRQL 148


>gi|163755971|ref|ZP_02163088.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1]
 gi|161324142|gb|EDP95474.1| RNA methyltransferase, TrmH family, group 2 [Kordia algicida OT-1]
          Length = 150

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R ++A      +          A L ++     +H+      N 
Sbjct: 5   IVLMEPEIPTNTGNIGRLSLASGSKLHLVKPFGFEITDARLKRAGLDYWQHLEVHIYENT 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH-L 254
            +      + G + + LSS  +K  ++    D++ L+ G E  GL  +  E      + +
Sbjct: 65  AEF--YAKNAGKKMVYLSSHGQKTYDEIPYEDELFLVFGKESVGLSEEIVENNKEHLYTI 122

Query: 255 HMPG-IIKALNVSNAAAVALYITQNHF 280
            M    I++LN++NA ++ +Y      
Sbjct: 123 PMFSEHIRSLNLANAVSIVVYEGIRRL 149


>gi|108759067|ref|YP_630311.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108462947|gb|ABF88132.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 243

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 68/163 (41%), Gaps = 17/163 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              QL +VL       N+GA+ R    F    +I ++    S      + A  +   +  
Sbjct: 3   PGEQLTVVLHQTRSTDNLGAVARIMANFGYSRLILSEPVLKSIEG-AERLAVKSDFVLRG 61

Query: 190 IRIS-NLTDALQ------------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           + ++ +L +AL+            ++     +T+    ++ + L +E    ++AL+ G E
Sbjct: 62  MEVTSDLGEALKDCVYAVGTTSRTQLKG---RTVLTPEEAMQRLAEESVRGRVALVFGGE 118

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +G+  +     T +  +    +  ++N++ ++AV LY+    
Sbjct: 119 QRGMSDEDLARCTDVLAIPTSAVQPSMNLAQSSAVLLYLCHRQ 161


>gi|210623503|ref|ZP_03293848.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
 gi|210153561|gb|EEA84567.1| hypothetical protein CLOHIR_01798 [Clostridium hiranonis DSM 13275]
          Length = 156

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     PHN G I+R+         +            L +      +        N 
Sbjct: 5   IVLVEPEIPHNTGNIIRTCAVTGAKLHLVKPLGFELTDKHLKRCGLDYWDIADVKIYENF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +   +     +  +G S   K+        D   L+ G+E KGL  +  E      A +
Sbjct: 65  EELEAQYPDAQY-VLGTS-KVKRTHTDVEYKDGCFLVFGSETKGLSKEIIERHIEDCARI 122

Query: 255 HM--PGIIKALNVSNAAAVALYITQNHF 280
            M      + LN+SNA AV  Y      
Sbjct: 123 PMLDLERARCLNLSNAVAVMTYEALRQL 150


>gi|160915913|ref|ZP_02078121.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991]
 gi|158432389|gb|EDP10678.1| hypothetical protein EUBDOL_01936 [Eubacterium dolichum DSM 3991]
          Length = 169

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 28/160 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ +A +    +        +   L ++    ++ + Y    N 
Sbjct: 4   VVLYEPEIPQNTGNIMRTCMASNTVLHLIEPLGFSLDEQHLKRAGMDYVKDLDYRVYKNW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--------------LILGAEGKGLR 241
            +               S +  +      +  K A              LILG E  G+ 
Sbjct: 64  EEF-------------TSQNPSENYYYMTRYGKKAPSAFDFTSCVGDIYLILGKESTGIP 110

Query: 242 PKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +  +        L M    ++LN+SN AA+ +Y      
Sbjct: 111 KEILKHQLDHCMRLPMVAKARSLNLSNCAAIIVYEVLRQL 150


>gi|170719600|ref|YP_001747288.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169757603|gb|ACA70919.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas putida
           W619]
          Length = 153

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRHESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ + +   +    ++    P  +       A + G E +GL  +  ++  A     
Sbjct: 64  ARCLENLGNP--RLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV +Y     
Sbjct: 122 LPMMPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|315281638|ref|ZP_07870220.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL
           S4-120]
 gi|313614716|gb|EFR88278.1| RNA methyltransferase, TrmH family, group 2 [Listeria marthii FSL
           S4-120]
          Length = 169

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      +L
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATS-M 251
            +  +   + G +   ++   +        +D       + G E  GL  +  +      
Sbjct: 65  DEFFE--KNAGGEFFYITKFGRHVYSDIDYSDPNKNYFFVFGKETTGLPDELLQNNEENC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+  Y     
Sbjct: 123 LRIPMTDHIRSLNLSNTAAILAYEALRQ 150


>gi|225871140|ref|YP_002747087.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225700544|emb|CAW95025.1| SpoU rRNA methylase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 182

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDIRFYDHL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLR-PKTQETATSMA 252
            + L +        I  S  + +    E  ND+ +   + G E  GL  P  ++ A    
Sbjct: 79  DEFLAQCDGS-LHVI--SKFADRVYSDEAYNDRQSHYFLFGREDTGLPEPFMRQYADRAL 135

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNHFA 281
            + M    +++LNVSNA  V +  Y      A
Sbjct: 136 RIPMNDEHVRSLNVSNA--VCMIVYEALRQQA 165


>gi|254303831|ref|ZP_04971189.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324023|gb|EDK89273.1| tRNA methylase SpoU [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 150

 Score = 69.7 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + L+   + G +    ++ +K+        +   ++ G E +G+      + +     +
Sbjct: 63  EEFLEA--NKGIRIFYATTKTKQKYSDVKYKEDDYIMFGPESRGIPEDILNKNSERCITI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M  + ++LN+SN+A + LY       
Sbjct: 121 PMIPMGRSLNLSNSAVIILYEAYRQLG 147


>gi|150391330|ref|YP_001321379.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens
           QYMF]
 gi|149951192|gb|ABR49720.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus metalliredigens
           QYMF]
          Length = 165

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 15/166 (9%)

Query: 124 PTLDAVRNSQLLMVLD-HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
              +AV  +  +++L+  +  P N G I R+ VA      +        +   + ++   
Sbjct: 2   EEWEAVELALHVVLLEPEI--PQNTGNIARTCVATGATLHLIGPMGFSIDEKQVKRAGLD 59

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLR 241
             E +         D L+   +   +    ++ ++K   +     D   ++ G E  G+ 
Sbjct: 60  YWELLDLNYYDRYADFLE--KNKHPKVYCATTKAQKNHSEVAYPQDDTYIMFGKETAGIP 117

Query: 242 PKTQETATS---MAHLHMPGIIK---ALNVSNAAAVALYITQNHFA 281
            +  +          + M   I+   +LN+SNA ++ +Y     + 
Sbjct: 118 KEILK--DHEETCIRIPMV-DIERARSLNLSNAVSIVVYEVLRQWG 160


>gi|107104223|ref|ZP_01368141.1| hypothetical protein PaerPA_01005296 [Pseudomonas aeruginosa PACS2]
 gi|218894226|ref|YP_002443095.1| putative rRNA methylase [Pseudomonas aeruginosa LESB58]
 gi|254243993|ref|ZP_04937315.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192]
 gi|126197371|gb|EAZ61434.1| hypothetical protein PA2G_04825 [Pseudomonas aeruginosa 2192]
 gi|218774454|emb|CAW30271.1| probable rRNA methylase [Pseudomonas aeruginosa LESB58]
          Length = 153

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ +     +    ++   +   +       A + G E +GL    +          
Sbjct: 64  QSCLEALGQP--RLFAFTTKGSRAFHEVAYQRDDAFLFGPESRGLPEDVRNALPTDRRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  AV +Y       
Sbjct: 122 LPMREGCRSLNLSNTVAVTVYEAWRQLG 149


>gi|149925625|ref|ZP_01913889.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
 gi|149825742|gb|EDM84950.1| predicted rRNA methylase (SpoU class) [Limnobacter sp. MED105]
          Length = 156

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A + ++     E+   +     
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGVQLHLVEPLGFPLEDARMRRAGLDYHEYANMLVHPGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              L +      +   +++  K             L+ G+E +GL  + +      +   
Sbjct: 64  EAFLDRQQPNPQRCFAMTTKGKHSPFDVKFQAGDYLMFGSETRGLSEEVRNWFARENWLR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN+ AV +Y       
Sbjct: 124 LPMRPESRSLNLSNSVAVMVYEAWRQLG 151


>gi|148268327|ref|YP_001247270.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394389|ref|YP_001317064.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
 gi|257793786|ref|ZP_05642765.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|258420770|ref|ZP_05683709.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9719]
 gi|295406162|ref|ZP_06815970.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|297244915|ref|ZP_06928792.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|147741396|gb|ABQ49694.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946841|gb|ABR52777.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus JH1]
 gi|257787758|gb|EEV26098.1| RNA methyltransferase [Staphylococcus aureus A9781]
 gi|257843374|gb|EEV67784.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9719]
 gi|294969159|gb|EFG45180.1| RNA methyltransferase [Staphylococcus aureus A8819]
 gi|297177995|gb|EFH37243.1| RNA methyltransferase [Staphylococcus aureus A8796]
 gi|315130500|gb|EFT86486.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329727203|gb|EGG63659.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 156

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     E +      ++
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQET-ATSM 251
               +  +   +    L+   KK          +     I G E  GL    +E    + 
Sbjct: 65  EAFFEATNGEYYL---LTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTT 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSEHIRSLNLSNTAALLIYEALRQ 149


>gi|255084469|ref|XP_002508809.1| predicted protein [Micromonas sp. RCC299]
 gi|226524086|gb|ACO70067.1| predicted protein [Micromonas sp. RCC299]
          Length = 312

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 65/232 (28%), Gaps = 31/232 (13%)

Query: 52  YGVHTVSA--ALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEA 109
            G   V    AL     +    L+ +     L+  A L          P+ I  +   E 
Sbjct: 65  EGWAAVQDDTALEFRGDRRTLDLSLERRADPLERRAPLS--------SPERIPGLENIET 116

Query: 110 VHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
             +G+ +          D  R+    + +    +  N G + RSA         T     
Sbjct: 117 RARGVVV------PAPGDESRDGYFGIGIVGGKNEANQGTLWRSAYQLGAAFTYTVGARF 170

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
              S+   K+      ++P     N                        PL      D+ 
Sbjct: 171 EKSSSDTTKT----WTNLPMYSHDNWNAFAASAPYDAAWVAV--EMGGAPLATFHHPDRA 224

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIK-----ALNVSNAAAVALYIT 276
             +LG+E  GL          +  L      +     + NV+ A ++ +Y  
Sbjct: 225 VYVLGSEDNGLNSSVLRACAHVVELP----AEVGRGASFNVAVAGSLVMYDR 272


>gi|95930687|ref|ZP_01313421.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
 gi|95133339|gb|EAT15004.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
          Length = 158

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 10/156 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +    +VL     P N G I R          +  K     +   L ++      H+P  
Sbjct: 3   DPPFHIVLVEPEIPPNTGNIARLCAGTQTHLHLVGKLGFSLDDRYLKRAGLDYWPHVPLH 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQE- 246
           R  +L    Q      +     ++    S+             ++ G E KGL  +  E 
Sbjct: 63  RWDSLEQLEQAYPEGRWWYTSKTAHLVHSQATFHPGDF-----IVFGKETKGLPKELLER 117

Query: 247 TATSMAHLHMP-GIIKALNVSNAAAVALYITQNHFA 281
                  + M    +++LN+S +A + LY       
Sbjct: 118 HPQRCLRIPMSCDAVRSLNLSTSAGIVLYEALRQVG 153


>gi|330505488|ref|YP_004382357.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328919774|gb|AEB60605.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 153

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R S+L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCQLHLIEPLGFELDDKRLRRAGLDYHEYATLKRHSDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+ +     +    ++   +P  +       A + G E +GL  + +          
Sbjct: 64  QSCLEALGHP--RLFAFTTKGSQPFHEIAYQPGDAFLFGPESRGLPEEVRNALPPQQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV +Y    QN FA
Sbjct: 122 LPMRAGCRSLNLSNTVAVTVYEAWRQNGFA 151


>gi|257458795|ref|ZP_05623918.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268]
 gi|257443783|gb|EEV18903.1| RNA methyltransferase, TrmH family [Campylobacter gracilis RM3268]
          Length = 162

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 13/151 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +     N G+I R  V   C   +        +   L ++       +      + 
Sbjct: 4   IVLVYPQIHTNTGSIGRMCVNAGCPLHLIKPLGFVIDDKHLRRAGLDYWASLDLKIWESW 63

Query: 196 TDALQ---KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT----QETA 248
            + +    K     F     +  +K   E + +     LI G+EG GL  +     +E  
Sbjct: 64  DEFMAANGKFKQRFF--FATTKTNKLYYEAKFQPGDF-LIFGSEGHGLPLEIMRTNRENC 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G  ++LN++ +  +  Y     
Sbjct: 121 ---ITIPMSGAGRSLNLATSVGIVTYEAIRQ 148


>gi|332521339|ref|ZP_08397795.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
 gi|332043067|gb|EGI79265.1| tRNA/rRNA methyltransferase (SpoU) [Lacinutrix algicola 5H-3-7-4]
          Length = 152

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRISN 194
           +VL     P+N G I R A+      +   K +    +    K A     +H+      N
Sbjct: 5   IVLIEPEIPNNTGNIGRLALGSG-STLHLVKPFGFEITDTRLKRAGLDYWQHLNLHYYDN 63

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAH 253
           + D L+K  +     + LSS   K        D + L+ G E KGL    T +    +  
Sbjct: 64  IEDFLEKNKTKKM--VFLSSHGTKQHWDIKFEDDLFLVFGKESKGLPKSLTSKHQDKLFK 121

Query: 254 LHMPG-IIKALNVSNAAAVALYITQNHFA 281
           + +    I++LN++NA ++ +Y       
Sbjct: 122 IPLYSEHIRSLNLANAVSIVVYEGLKQIN 150


>gi|218550884|ref|YP_002384675.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ATCC
           35469]
 gi|218358425|emb|CAQ91072.1| putative rRNA methylase [Escherichia fergusonii ATCC 35469]
          Length = 157

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  N 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHNY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFLKAENPQRLFALTTKGTPAHSAVSYQDSDY-----LMFGPETRGLSSSILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|206901633|ref|YP_002251674.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206740736|gb|ACI19794.1| 23S rRNA methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 153

 Score = 69.7 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R  VA +    +  K         L ++       + Y    N 
Sbjct: 7   VVLIEPQIPYNTGNIGRLCVATNSKLHLVGKLGFSLNDKYLKRAGLDYWSLLDYEVYKNF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            D L+   + G + I +   + K   +    +   LI GAE  G+  +  E        +
Sbjct: 67  EDFLE--KNEGGRFIFVEFPAFKLYTEVSYQEGDYLIFGAEDYGIPREIIERYWENSVSI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M G +++LN+S++ A+ +Y       K
Sbjct: 125 PMFGPVRSLNLSSSVAIVVYEALRQIKK 152


>gi|325958420|ref|YP_004289886.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
           AL-21]
 gi|325329852|gb|ADZ08914.1| RNA methyltransferase, TrmH family, group 1 [Methanobacterium sp.
           AL-21]
          Length = 233

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 34/165 (20%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           + +V      P NIG + R+   F    ++           +  +S   A+     +   
Sbjct: 2   IYVVFVEPESPGNIGFLARTMKNFGLTNLVLINPC-----ELKNESYYQAMHARDVVSNC 56

Query: 194 NLTDALQK-MHSWGFQT-IGLSSDSKKPL-------------EQEIKNDKIALILGAEGK 238
            + + L++ +      T +  + ++                 +       I LI G EG 
Sbjct: 57  EIYETLEEFLEKANISTAVATTGNAGGSYNISKIAVTPETLSDSINYGGNICLIFGREGN 116

Query: 239 GLRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
           GL  +       +  +        M       NV++AAA+  Y  
Sbjct: 117 GLSNQEIALCDVIVSIPTHEEYQIM-------NVTHAAAIIFYEL 154


>gi|212696108|ref|ZP_03304236.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676737|gb|EEB36344.1| hypothetical protein ANHYDRO_00644 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 152

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G I R+ V       +         +  L K+     + +  +   +L
Sbjct: 4   IVLISPEHPGNVGNISRTCVLTESRLHLIRPFKFDFSNKSLKKAGIDYWDKLDLVVHDSL 63

Query: 196 TDALQKMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
            +    +       I   SD   +    +          I G E +G+  +  +      
Sbjct: 64  DEFFTYVKDKNIYLIETGSDKNYADISYKDGDY-----FIFGREKEGIEKEILDKYKEKI 118

Query: 253 H-LHMPGIIK-ALNVSNAAAVALYI--TQNHF 280
           + + M   +  +LN++N+ A+ LY    QN+F
Sbjct: 119 YTIPMTKKLNRSLNLANSVAIVLYEGLRQNNF 150


>gi|258510467|ref|YP_003183901.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477193|gb|ACV57512.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 154

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+         +  K    ++   L ++       +      +L
Sbjct: 3   IVLFEPEIPANTGNVARTCAVTGSTLHLVGKLGFSTDDRQLKRAGLDYWHLLDIRYHDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            + L  ++  G     + ++  +   +        L+ G E KGL     E  A  +  +
Sbjct: 63  EE-LWALYPEGVFHY-VETEGGRWYTEVAYGPNDFLVFGKETKGLPKDVIEAHADHVVRI 120

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M      ++LN+SNA AV ++     
Sbjct: 121 PMIDHAAARSLNLSNAVAVVVFEALRQ 147


>gi|77456565|ref|YP_346070.1| RNA methyltransferase TrmH, group 2 [Pseudomonas fluorescens Pf0-1]
 gi|77380568|gb|ABA72081.1| putative RNA-methyl transferase [Pseudomonas fluorescens Pf0-1]
          Length = 151

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+    R ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ +     +    ++   +P          A I G E +GL P+  +         
Sbjct: 64  ASCLESLGHP--RLFAFTTKGSRPFHDAAFVPGDAFIFGPESRGLPPEVLDALPGEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|157963757|ref|YP_001503791.1| RNA methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157848757|gb|ABV89256.1| RNA methyltransferase, TrmH family, group 2 [Shewanella pealeana
           ATCC 700345]
          Length = 153

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +        N    L+ M   
Sbjct: 14  NTGNIIRLIANNGCKLHLIEPLGFDLEDKKLRRAGLDYADLANVTHHKNFEAFLEAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     ++        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHSELTFKQDDVLLFGPESRGLPADIIDSIPTEQRLRIPMMSTSRSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  Y      
Sbjct: 132 NLSNAVAIISYEAWRQL 148


>gi|297571488|ref|YP_003697262.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931835|gb|ADH92643.1| tRNA/rRNA methyltransferase (SpoU) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 158

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 5/141 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A        +        + A L ++     +    +   N   A +   
Sbjct: 12  PGNTGNAIRLAACTGARLHLIEPLAFNFDDAHLRRAGLDYHDLADVVIHPNWEAAKEYFG 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHM-PGII 260
               +    +S ++     E   D   L+ G E  GL  +       T    + M PG  
Sbjct: 72  DDR-RVFAFTSHTENNYADEQYQDGDILLFGTEPTGLPDEVLNDPYLTKHLRIPMLPGR- 129

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN++N+A++ +Y       
Sbjct: 130 RSLNLANSASIVVYEAWRQLG 150


>gi|319442925|ref|ZP_07992081.1| putative rRNA methylase, SpoU class [Corynebacterium variabile DSM
           44702]
          Length = 164

 Score = 69.3 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P N G  +R          +        +   L ++     +        N 
Sbjct: 11  VLFDQPVIPGNTGNTIRQCAGTGAALHLAGPLGFNFDDRHLKRAGLDYHDLASVTLHENR 70

Query: 196 TDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMA 252
             AL ++   G  +    ++ +              L+ G E  GL  +  +    T   
Sbjct: 71  DAALAELADKGGHRVFAFTAHADTWFTDITYEPGDVLLFGTEPTGLEQQALDDPRVTQHV 130

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M    +++N++NAAAVA Y     
Sbjct: 131 RIPMLPGRRSMNLANAAAVATYEAWRQ 157


>gi|294792254|ref|ZP_06757402.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           6_1_27]
 gi|294457484|gb|EFG25846.1| RNA methyltransferase, TrmH family, group 2 [Veillonella sp.
           6_1_27]
          Length = 161

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            +  +K  +  +     +  +K    +        L+ G E +GL     +    +   +
Sbjct: 63  QELYEKYPNRRYF-YATT-KAKHTHSEVKYEIGDMLVFGPETRGLPESLLDGKEDTCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SNA A+  Y      
Sbjct: 121 PMVDEARSLNLSNAVAIIAYEGMRQL 146


>gi|46581141|ref|YP_011949.1| RNA methyltransferase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601619|ref|YP_966019.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|46450562|gb|AAS97209.1| RNA methyltransferase, TrmH family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561848|gb|ABM27592.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris DP4]
 gi|311234817|gb|ADP87671.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio vulgaris RCH1]
          Length = 254

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 23/161 (14%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK-RYSPSESAVLAKSASGA--LEHIP 188
             L +V+     P N+G + R+ V      I+         + A    +A G   LE + 
Sbjct: 3   PGLTVVMVKTRFPENVGMVARACVNMGAQDIVLVDPERWEIDKARPLATAKGEPLLERVK 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILG 234
            +    L++A+    +      G ++ +     + +  +K              +AL+LG
Sbjct: 63  VV--GTLSEAVADCTA----VWGTTARTGGWRREILTPEKAGPEMAASLADGERVALLLG 116

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            E +GL     E  T +  +       +LNV+ A+ + LY 
Sbjct: 117 PEDRGLNNDEIEHCTRLLTIPTAPEASSLNVAQASLIVLYE 157


>gi|50365192|ref|YP_053617.1| rRNA methyltransferase [Mesoplasma florum L1]
 gi|50363748|gb|AAT75733.1| rRNA methyltransferase [Mesoplasma florum L1]
          Length = 179

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+ AI+R+ VA +    I        +   + ++++G  + + Y    + 
Sbjct: 7   IVLYEPEIAQNVAAIIRTCVATNAKLHIIEPLGFIFKKEEMNRASAGTFDLVEYQLYDDW 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETAT--- 249
            D  +   +       +S   +KP      N     + ++ G E  G+  +  +      
Sbjct: 67  EDFCE--KNPSIDLFCISRYGEKPHSDFDFNSYQKPVFVMFGKESTGIPKQIIK--DNYE 122

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +   L M    +++NV+N   +  Y     
Sbjct: 123 NTFRLPMSPQTRSINVANTVGIVTYEILRQ 152


>gi|238018785|ref|ZP_04599211.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
 gi|237864551|gb|EEP65841.1| hypothetical protein VEIDISOL_00643 [Veillonella dispar ATCC 17748]
          Length = 161

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254
            +   K     +     +  +K    +        L+ G E +GL     E        +
Sbjct: 63  QELYAKYPDRRYF-YATT-KAKHTHSEVKYEIGDMLVFGPESRGLPESLLEGVEETCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SNA A+  Y      
Sbjct: 121 PMVDEARSLNLSNAVAIIAYEAMRQL 146


>gi|331092004|ref|ZP_08340835.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402205|gb|EGG81776.1| hypothetical protein HMPREF9477_01478 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 165

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA +    +            L ++     E +      N 
Sbjct: 4   IVLFEPEIPANTGNIGRTCVATNTRLHLIEPLGFRLNEKALKRAGMDYWEDLDVTTYINY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            D L+   +   +    ++ +              ++ G E  G+  +           +
Sbjct: 64  EDFLE--KNPNAKIYMATTKAPNVYTDVSYEPDCYIMFGKESAGIPEEILVLHKEDSIRI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M   I++LN+ N+ A+ LY    QN FA
Sbjct: 122 PMSQDIRSLNLGNSVAIVLYEALRQNGFA 150


>gi|320094713|ref|ZP_08026467.1| SpoU rRNA methylase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319978355|gb|EFW09944.1| SpoU rRNA methylase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 216

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 6/149 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A R     + ++++    NIG+I+R+A A     +    R          + A     +I
Sbjct: 67  ASRALPFEVAVENLGHDFNIGSIVRTANALGARRVHIVGRR-----RWNRRGAMVTDRYI 121

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               +             G   +G        PLE         L+ G E  GL      
Sbjct: 122 EVGHMEGAGALAGHCRREGLALVGFDNVPGSVPLEGLALPASACLLFGEESGGLSEGALA 181

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYI 275
              ++  +   G  +++NV +AAA+A++ 
Sbjct: 182 ACAAVVAITQRGSTRSMNVGHAAAIAMWA 210


>gi|152993289|ref|YP_001359010.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
 gi|151425150|dbj|BAF72653.1| tRNA/rRNA methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 164

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  V       +        +   + ++     +H+  +   + 
Sbjct: 4   IVLVEPQIPQNTGTIGRLCVNLGATLHLIKPLGFDIDDKAVKRAGLDYWKHLDLVVWESF 63

Query: 196 TDALQKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
                 +        +   ++ +              ++ G+E KG+  K          
Sbjct: 64  EAF---LKEHPIDEHSYMSTTKTDNLYFNAPFKKGDYILFGSETKGIDEKVLLAHPEQCI 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M G  ++LN+  +  V +Y     
Sbjct: 121 TIPMGGKGRSLNLGVSVGVVIYDALRQ 147


>gi|239637864|ref|ZP_04678825.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
           L37603]
 gi|239596427|gb|EEQ78963.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus warneri
           L37603]
          Length = 156

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     EH+      N+
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHENI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQET-ATSM 251
               +      +    L+   K+       +D       I G E  GL    ++    + 
Sbjct: 65  ESFFESTDGEYYL---LTKFGKQTYSDFDFSDTQNNHYFIFGRETTGLPDWVKDKYQDTA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSDKIRSLNLSNTAALLIYEALRQ 149


>gi|300024766|ref|YP_003757377.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526587|gb|ADJ25056.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 168

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-ALQKMHS 204
           N+G ++RSA AF      T       ++       S +  H+P+   + L D AL     
Sbjct: 28  NLGNLMRSAHAFGASFTFTVGAT--YKAVEAHADTSKSQLHLPHYNWATLDDMALP---- 81

Query: 205 WGFQTIGLS-SDSKKPLEQEIKNDKIALILGAE-GKGLRPKTQETATSMAHLHMPGIIKA 262
            G + +G+   D    L       + A +LG E G  L     E    +  +     I  
Sbjct: 82  GGCKLVGIELLDGAIDLPSFRHPLRAAYVLGPELGS-LSEPLVERCDYVIKIPTRFCI-- 138

Query: 263 LNVSNAAAVALYITQNHFAK 282
            NV+ A A+ +Y      A+
Sbjct: 139 -NVAMAGAIVMYDRVKSLAR 157


>gi|308807411|ref|XP_003081016.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
 gi|116059478|emb|CAL55185.1| tRNA/rRNA methyltransferase (ISS) [Ostreococcus tauri]
          Length = 170

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 19/164 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +   L +VL     P N G + RS  A      +    +   + A L ++     + +  
Sbjct: 8   QRDDLAVVLVEPRIPGNTGCVARSCAAARVPLHLVDPLFE-LDDARLKRAGLDYWKSVCV 66

Query: 190 IRISNLTDALQKMHSW--------GFQTIGLSSDSKK-PLEQEIKNDKIALILGAEGKGL 240
               +                   GF  +G    ++     +        L+ G+E KGL
Sbjct: 67  RVHPSWEAFYAYWRGVETTEKRLVGFSKLGARPHAETGAYRRGDW-----LLFGSEDKGL 121

Query: 241 RPKTQETATS---MAHLHMPG-IIKALNVSNAAAVALYITQNHF 280
           R    E       +  + +    +++LN+S +A + +Y      
Sbjct: 122 REDAMEACRQSGGIRRIPIDETHVRSLNLSVSAGIGIYEALRQL 165


>gi|330840305|ref|XP_003292158.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum]
 gi|325077613|gb|EGC31314.1| hypothetical protein DICPUDRAFT_156844 [Dictyostelium purpureum]
          Length = 310

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           N+KIAL+ G E  G+  + +  A    +L M G++++ NVS + A+ L
Sbjct: 207 NEKIALVFGNETVGVSEEMKSLADRRFYLPMIGMVQSFNVSVSVAMTL 254



 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEH 186
             RN + ++V +++ +  N+ AI+RSA A     I   T+     + A   + + G+   
Sbjct: 47  ESRNKRFVIVCENLENQGNVSAIVRSADAMGIQHIYSITEEGIDQQFANCGRVSLGSENW 106

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
           +   +    +  ++ + + G+        +      ++    
Sbjct: 107 LTQKKFKKTSTCIEYLKNKGYSIWVSDLSATSFSFDKLIFQP 148


>gi|319945283|ref|ZP_08019545.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319741853|gb|EFV94278.1| tRNA/rRNA methyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 183

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 30/173 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R      C   +      P + A + ++     E        N 
Sbjct: 4   VVLVQPEIPPNTGNVIRLCANTGCALHLIEPLGFPIDHAKMRRAGLDYHEFTAITVHKNW 63

Query: 196 TDALQKMHS--------------------------WGFQTIGLSSDS-KKPLEQEIKNDK 228
              L  M +                          +  +  GLS+   K P +       
Sbjct: 64  AAFLDSMRASMAAASGSYPQAAPSQTPHSNARQIPFSGRLYGLSTSGHKSPYDHRFLPGD 123

Query: 229 IALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             L+ G E  GL    Q++     +  L M    ++LN+SNA AV ++     
Sbjct: 124 -CLVFGRETSGLPDDVQDSLGTDHLLRLPMRPHNRSLNLSNAVAVTVFEAWRQ 175


>gi|313634054|gb|EFS00734.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL
           N1-067]
 gi|313638638|gb|EFS03765.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri FSL
           S4-171]
          Length = 169

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 14/152 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      ++
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTYYDSM 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQ----ET 247
            D  +   + G +   ++   +        +D  A     I G E  GL  +      E 
Sbjct: 65  DDFFE--KNHGGEFYYITKFGRHLYSDIDYSD-TAKDYFFIFGKETTGLPDELLQANEEH 121

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M   I++LN+SN AAV  Y     
Sbjct: 122 C---LRIPMTDHIRSLNLSNTAAVLAYEALRQ 150


>gi|254460272|ref|ZP_05073688.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083]
 gi|206676861|gb|EDZ41348.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083]
          Length = 157

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 3/148 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   ++ +VL     P N GAI R+ VA + + I+        +   + ++ +   +H+ 
Sbjct: 1   MPTPRMKIVLVTPEIPWNTGAIGRTCVALNLELILIKPLGFSLDEKSVRRAGTDYWKHVN 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-T 247
                +    ++       Q         + L +   +    L+ G E  GL     +  
Sbjct: 61  LTLYDDWVAFIEARKPTRDQLYFFEEHGAQSLYEPDYDPDGYLVFGCESAGLPKSLLDGL 120

Query: 248 ATSMAHLHMPG-IIKALNVS-NAAAVAL 273
              + HL M    +++LN++  A AV  
Sbjct: 121 EDRVFHLPMLSDKVRSLNLANVATAVIF 148


>gi|193216697|ref|YP_001999939.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
 gi|193002020|gb|ACF07235.1| SpoU class tRNA/rRNA methyltransferase [Mycoplasma arthritidis
           158L3-1]
          Length = 173

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHS 204
           N   I+R+  A +    I            L + A+G     I +   +N     +K   
Sbjct: 14  NTANIIRTCFATNAKLHIIKPTAFDLHPHWLKRKAAGHFLSEIEHEIHANYEQFFKKYGD 73

Query: 205 WGF---QTIGLSSDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQET----ATSMAHLHM 256
                    GLS+ S+   + E+ N+K   ++ G E  G+  K  +T          + M
Sbjct: 74  KNIYYITRYGLSNYSQIDWKNELDNNKEIWVMFGTESTGIPKKIMQTKIANC---LRIPM 130

Query: 257 PGIIKALNVSNAAAVALYITQNH 279
               ++LN++N+ A+ LY     
Sbjct: 131 FAQCRSLNLANSVAIVLYEIMRQ 153


>gi|309799791|ref|ZP_07694002.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis
           SK1302]
 gi|308116585|gb|EFO54050.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus infantis
           SK1302]
          Length = 167

 Score = 69.3 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETATSMA 252
            D ++KM     Q   +S  ++K               + G E KGL  +  +E      
Sbjct: 65  ADFMEKMDG---QLYLISKFAEKVYSDADFTTEGDHYFLFGREDKGLPEEFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            + M    +++LNVSN   V +  Y     
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQ 149


>gi|313892393|ref|ZP_07825985.1| RNA methyltransferase, TrmH family, group 2 [Dialister
           microaerophilus UPII 345-E]
 gi|329121325|ref|ZP_08249951.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
 gi|313119252|gb|EFR42452.1| RNA methyltransferase, TrmH family, group 2 [Dialister
           microaerophilus UPII 345-E]
 gi|327469734|gb|EGF15200.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
           19965]
          Length = 170

 Score = 69.3 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   L ++     + +      N 
Sbjct: 3   IVLVEPEIPGNTGNISRLCAAEHLTLHLVEPLGFSIDDKHLKRAGLDYWKFLDIHIHKNF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
               Q +    F     +  +K         +   L+ G E KGL  +   E   S   +
Sbjct: 63  ESVKQMLKGKRFF-YNTT-KAKHVYTDISYKEDDVLVFGKETKGLPEELLLENQDSCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN+SNA A+        
Sbjct: 121 PMVEEARSLNLSNAVAIVALEALRQ 145


>gi|283954465|ref|ZP_06371985.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794082|gb|EFC32831.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 155

 Score = 69.3 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 9/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   NL
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPSVFDISQKAVRRAGLDYWDKLEPIIWENL 63

Query: 196 TDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-A 252
            + L +  +H   F     ++ S+KP           L  G+E  GL  +  +       
Sbjct: 64  EEFLNENIIHKNRF--FFATTKSQKPYFDVEFQKNDFLFFGSESYGLSMELMQLNWQNAI 121

Query: 253 HLHM--PGIIKALNVSNAAAVALYITQNH 279
            + M   G   +LN++ +  +  Y     
Sbjct: 122 TIPMKSYGR--SLNLATSVGIISYEALRQ 148


>gi|157373406|ref|YP_001472006.1| RNA methyltransferase [Shewanella sediminis HAW-EB3]
 gi|157315780|gb|ABV34878.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sediminis
           HAW-EB3]
          Length = 154

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +     R  +    L  M   
Sbjct: 14  NTGNIIRLCANNGCQLHLIEPMGFDLEEKKLRRAGLDYSDLTRVTRHKDFESFLAAMDGK 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
             + +  ++   +P  +     +  L+ G E +GL  +  E+   T    + M    ++L
Sbjct: 74  --RIMACTTKGSRPHTELAYEKEDVLLFGPETRGLPIEIIESLPTTQRLKIPMTANSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQIG 149


>gi|104779663|ref|YP_606161.1| RNA methyltransferase [Pseudomonas entomophila L48]
 gi|95108650|emb|CAK13344.1| putative RNA methyltransferase, TrmH family, group 2 [Pseudomonas
           entomophila L48]
          Length = 153

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R  +L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANSGCALHLIEPISFELDDKRLRRAGLDYHEYATLKRHESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ + +   +    ++    P  +       A + G E +GL  +  ++  A     
Sbjct: 64  AGCLESLGNP--RLFAFTTKGSHPFHEVAYQPGDAFLFGPESRGLPAEVLDSLPAEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV +Y     
Sbjct: 122 LPMRPGCRSLNLSNTVAVTVYEAWRQ 147


>gi|167767431|ref|ZP_02439484.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1]
 gi|317497260|ref|ZP_07955584.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710723|gb|EDS21302.1| hypothetical protein CLOSS21_01950 [Clostridium sp. SS2/1]
 gi|291558735|emb|CBL37535.1| Predicted rRNA methylase (SpoU class) [butyrate-producing bacterium
           SSC/2]
 gi|316895505|gb|EFV17663.1| RNA methyltransferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 165

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 11/150 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ VA      +           ++ ++     + +      N 
Sbjct: 4   IVLHEPEMPANTGNIGRTCVACGAVLHLIEPLGFRLNEKMIKRAGLDYWDKLDVRTYINF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQ----ETAT 249
            D L+   +   +    ++ +K          ++ + ++ G E  G+  +      ET+ 
Sbjct: 64  EDFLE--KNNDPKIYMATTKAKHVYSAPAYEDDEDVYIMFGKESAGIPEEILLNYEETS- 120

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   I++LN+SN+ A+  Y    H
Sbjct: 121 --IRIPMLPHIRSLNLSNSVAIVAYEVLRH 148


>gi|20806774|ref|NP_621945.1| rRNA methylase (SpoU class) [Thermoanaerobacter tengcongensis MB4]
 gi|20515234|gb|AAM23549.1| predicted rRNA methylase (SpoU class) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 156

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 5/152 (3%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G I R+ V       +        +   + ++       +     
Sbjct: 2   PLNVVLVEPEIPQNTGNIARTCVLTGSRLHLVKPLGFSIDEKDVRRAGLDYWPLLDLTVY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSM 251
            NL + L+K     F     ++ + K   +    D+  LI G E  GL      E     
Sbjct: 62  ENLQEFLEKHKGKKF--YLATTRANKYYHEVKYEDEAFLIFGKETTGLPQWLIDEYYEDC 119

Query: 252 AHLHMPGII--KALNVSNAAAVALYITQNHFA 281
             + M   I  ++LN+SN+ A+ +Y       
Sbjct: 120 IRIPMHEKILWRSLNLSNSVAIIVYEALKQLG 151


>gi|46907168|ref|YP_013557.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092144|ref|ZP_00229937.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 4b H7858]
 gi|226223554|ref|YP_002757661.1| CspR protein, rRNA methylase homolog [Listeria monocytogenes
           Clip81459]
 gi|254823794|ref|ZP_05228795.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|254852429|ref|ZP_05241777.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|254931319|ref|ZP_05264678.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|255521487|ref|ZP_05388724.1| hypothetical protein LmonocFSL_09725 [Listeria monocytogenes FSL
           J1-175]
 gi|300764145|ref|ZP_07074140.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           FSL N1-017]
 gi|88979161|sp|Q721N0|TRML_LISMF RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase LMOf2365_0956
 gi|46880435|gb|AAT03734.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019584|gb|EAL10324.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 4b H7858]
 gi|225876016|emb|CAS04722.1| Putative CspR protein, rRNA methylase homolog [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605737|gb|EEW18345.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|293582869|gb|EFF94901.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293593016|gb|EFG00777.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|300515135|gb|EFK42187.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           FSL N1-017]
 gi|328466957|gb|EGF38060.1| hypothetical protein LM1816_13012 [Listeria monocytogenes 1816]
 gi|328475409|gb|EGF46178.1| hypothetical protein LM220_04151 [Listeria monocytogenes 220]
 gi|332311343|gb|EGJ24438.1| hypothetical protein LMOSA_18260 [Listeria monocytogenes str. Scott
           A]
          Length = 169

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      +L
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATS-M 251
            +  +   + G +   ++   +        +D       + G E  GL     +      
Sbjct: 65  DEFFE--KNEGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDALLQKNEENC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+  Y     
Sbjct: 123 LRIPMTDHIRSLNLSNTAAILAYEALRQ 150


>gi|213026633|ref|ZP_03341080.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 105

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +  + A     + M G++++LNVS A+A+ LY  Q   
Sbjct: 1   MTQEALDLADRDIIIPMIGMVQSLNVSVASALILYEAQRQR 41


>gi|229918148|ref|YP_002886794.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp.
           AT1b]
 gi|229469577|gb|ACQ71349.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium sp.
           AT1b]
          Length = 157

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM- 202
           P N G + R+  A +    +       ++  +L ++     + +      +L +  +K  
Sbjct: 13  PANTGNVSRTCAATNSVLHLIRPLGFSTDDKMLKRAGLDYWQFVDVRYHDSLEELWEKHP 72

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIK 261
               F            L+    +     + G E KGL  +  E        L    +++
Sbjct: 73  DGQFFYITKYGEQYPSDLDVSDVDGDYFFVFGRETKGLPMEVIENNLDRCIRLPQSNLVR 132

Query: 262 ALNVSNAAAVALYITQNH 279
           +LNVSN AA+ +Y     
Sbjct: 133 SLNVSNTAAIIVYEALRQ 150


>gi|254822692|ref|ZP_05227693.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           intracellulare ATCC 13950]
          Length = 154

 Score = 68.9 bits (168), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+A A  C+  +            L ++     +       ++L  A   +   
Sbjct: 14  NTGNAIRTAAATGCELHLVEPMGFDLSEPKLRRAGLDYHDLASVTVHASLAAAWDALSPE 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    +S +     Q        L+ G E  GL   T      T    + M    ++L
Sbjct: 74  --RVFAFTSHAPTSFAQVRYRAGDVLMFGPEPTGLDAATLADPHITGQVRIPMLAGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAVA+Y     
Sbjct: 132 NLSNAAAVAVYEAWRQ 147


>gi|188585180|ref|YP_001916725.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349867|gb|ACB84137.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 152

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +            L ++     + + Y    N 
Sbjct: 3   VVLVEPEIPPNTGNISRTCAVSNTTLHLVEPLGFSISDRELKRAGLDYWDKLSYQVHENF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
           T     + +        ++  K             L+ G E +GL         E +   
Sbjct: 63  TSVENLLQTH--PIYIATTRGKNYYYDIEYPRDSVLVFGKETEGLPDWIINKYYENS--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M    ++LN+SN+ AV L+     
Sbjct: 118 IRIPMAPDFRSLNLSNSVAVVLFEALRQ 145


>gi|163840031|ref|YP_001624436.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162953507|gb|ABY23022.1| RNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 151

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +        E + L ++     +        +L  A   + 
Sbjct: 8   PGNTGNAIRLAAITGSELHLVEPFGFELEDSKLRRAGLDYHDLAVLHVHPDLPSAWAALA 67

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               + +  +SD +             L+ G E  GL  + +     TS   L M   ++
Sbjct: 68  PE--RVLAFTSDGEASYTDIEYQAGDVLMFGPESVGLPAEVKTDPHVTSRVRLPMLPGLR 125

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++NAA++A+Y     
Sbjct: 126 SLNLANAASIAVYEAWRQ 143


>gi|167644668|ref|YP_001682331.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167347098|gb|ABZ69833.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 156

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS---GALEHIPYIRISNLTDALQ 200
           P N+GA +R        G+   +  S   +    K A+   G L H+  I  ++    L 
Sbjct: 11  PQNVGAAIRLGACLGV-GLDVIEPCSFPLNDKSLKRAALDYGPLTHM--ILHASWAAFLA 67

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                  + +  ++ +  P  +        L+ G E +G  P+  + A S   + +    
Sbjct: 68  APQRREGRLLLFTTKATTPFHKFDFQAGDTLLFGNESRGAPPEVHDAAFSRLMIPLRPEA 127

Query: 261 KALNVSNAAAVALYITQNH 279
           +++N++  AA+AL      
Sbjct: 128 RSMNLATTAAMALGEALRQ 146


>gi|119776572|ref|YP_929312.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B]
 gi|119769072|gb|ABM01643.1| RNA methyltransferase TrmH, group 2 [Shewanella amazonensis SB2B]
          Length = 158

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C+  +        E   L ++     +     R  +    L+ M   
Sbjct: 18  NTGNIIRLCANNGCELHLIEPLGFDLEEKKLRRAGLDYSDMTRVTRHKDFPSFLEAM--A 75

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL      +        + M    ++L
Sbjct: 76  GRRILACTTKGSRPHTELEYQAGDVLLFGPESRGLPMDIINSVPTEQRLRIPMVESSRSL 135

Query: 264 NVSNAAAVALYITQNH 279
           N+SNA A+  Y     
Sbjct: 136 NLSNAVAIISYEAWRQ 151


>gi|24376005|ref|NP_720048.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24351008|gb|AAN57492.1|AE015885_5 RNA methyltransferase, TrmH family, group 2 [Shewanella oneidensis
           MR-1]
          Length = 154

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R          +        E   L ++     +     R  N    L+ M   
Sbjct: 14  NTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKNFDAFLKAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     E+        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHSELSFAKDDVLLFGPETRGLPMSIIESIPTEQRLRIPMAATSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQLG 149


>gi|270292116|ref|ZP_06198331.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
 gi|270279644|gb|EFA25486.1| RNA methyltransferase, TrmH family [Streptococcus sp. M143]
          Length = 180

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIHFYDNL 77

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 78  ADFMSQMKE---KLYLISKFAEKVYSEADLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 134

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 135 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 166


>gi|15613586|ref|NP_241889.1| rRNA methylase [Bacillus halodurans C-125]
 gi|10173638|dbj|BAB04742.1| rRNA methylase [Bacillus halodurans C-125]
          Length = 157

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    + +  +       ++  +L ++      ++      ++
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTNTELHLIRPLGFSTDDRMLKRAGCDYWPNVNIHYYDSV 64

Query: 196 TDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAH 253
            +         F  I    S +    +    +     + G E  GL     ++       
Sbjct: 65  DELFATFPDGEFYFIETVGSKNYADFDYSDGSKDHLFVFGRETTGLPNDLIEQHLDRCFR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           +     +++LN+SN AA+ +Y     
Sbjct: 125 IPQTDKVRSLNLSNTAAIVIYEAIRQ 150


>gi|77407507|ref|ZP_00784344.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
 gi|77173885|gb|EAO76917.1| RNA methyltransferase, TrmH family, group 3 [Streptococcus
           agalactiae H36B]
          Length = 89

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV------RNSQLLM 136
                     +   P +T+  +     VHQG  L+ +      L  +        + L++
Sbjct: 14  KALATEKKVSISWTPKKTLSDMT-NGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLIL 72

Query: 137 VLDHVNDPHNIGAILRS 153
           +LD + DPHN+ +ILR+
Sbjct: 73  ILDGLTDPHNLSSILRT 89


>gi|160877349|ref|YP_001556665.1| RNA methyltransferase [Shewanella baltica OS195]
 gi|160862871|gb|ABX51405.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS195]
 gi|315269553|gb|ADT96406.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS678]
          Length = 154

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R          +        E   L ++     +     R  +    L+ M   
Sbjct: 14  NTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKDFDAFLEAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     E+        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHTELTFAKDDVLLFGPETRGLPMAIIESIPTEQRLRIPMAATSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQLG 149


>gi|296453420|ref|YP_003660563.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296182851|gb|ADG99732.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 282

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 49/190 (25%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF    +     +  +    L     
Sbjct: 74  IKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHIVGPHKWNRKGALMTELY 133

Query: 182 GALEHIP----------------------------------------------YIRISNL 195
             +EH P                                                 I   
Sbjct: 134 QHVEHHPSIAELVESWHHRIAGEIAYERAKAGAAAIHAHDVAVDGDNKHLHELLAEIDAC 193

Query: 196 TDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              ++++ +   + I L       P+E      +  L+ GAEG GL  K  E A  + ++
Sbjct: 194 DARIKELQAA--RVIALDIIPGAVPMETYTFPKRCLLLFGAEGPGLSEKALELADDVVYI 251

Query: 255 HMPGIIKALN 264
              G ++++N
Sbjct: 252 SQFGSVRSIN 261


>gi|294783881|ref|ZP_06749203.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           1_1_41FAA]
 gi|294479693|gb|EFG27472.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           1_1_41FAA]
          Length = 150

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 56/150 (37%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNSTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L+   + G +    ++ +K+        +   ++ G E +G+  +      E   ++
Sbjct: 63  EEFLEA--NKGIRLFYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEILNKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G   +LN+SN+A + LY       
Sbjct: 121 PMIPM-GR--SLNLSNSAVIILYEAYRQLG 147


>gi|77359337|ref|YP_338912.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874248|emb|CAI85469.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 154

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R ++ 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFAWDDKRIKRAGLDYHEFSHVQRHASF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +    ++   +   Q        L+ G E +GL  +  ++        
Sbjct: 64  EAYLEACKPK--KIYACTTKGSQFHHQAQYEAGDCLVFGPETRGLPDELIQSLPNEQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA +V +Y +     
Sbjct: 122 IPMQANSRSMNLSNAVSVFVYESWRQLG 149


>gi|117920726|ref|YP_869918.1| RNA methyltransferase [Shewanella sp. ANA-3]
 gi|117613058|gb|ABK48512.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. ANA-3]
          Length = 241

 Score = 68.9 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 22/163 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PSESAVLAKSASGALEHIPYIRIS 193
           ++L   + P NIG+  R+        +   +       +S  LA  AS  L+H+  +++ 
Sbjct: 7   VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHL--VKVD 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEGKGL 240
           +L +A+          I  S+ S+      +                 +A++ G E  GL
Sbjct: 65  SLEEAIADCS----LVIATSARSRTLDWPMLDPREAGQKLVTEGLTGPVAIVFGRENHGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
             +  +  T    +       +LN++ A  +  Y T+  H A+
Sbjct: 121 TNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQ 163


>gi|254516074|ref|ZP_05128134.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           NOR5-3]
 gi|219675796|gb|EED32162.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           NOR5-3]
          Length = 154

 Score = 68.9 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 4/150 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L + L     P N G I+R      C   +        +   L ++     E        
Sbjct: 2   LQVALYEPEIPPNTGNIMRLCANTGCALHLIKPLGFALDDKQLRRAGLDYREFANVSVHD 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           +L   +  +      T  LS+   +   QE       L+ G E +GL     +       
Sbjct: 62  SLDAMVAALDKPRIWT--LSTRGTRSYTQEQFQTNDVLLFGPETRGLPVSLIDELGVHRC 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    ++LN+SNA A+ LY       
Sbjct: 120 LRVPMRPDSRSLNLSNATALVLYEGLRQLG 149


>gi|187932064|ref|YP_001892049.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712973|gb|ACD31270.1| RNA methyltransferase, SpoU family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 155

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIG I+R          +        E   L ++     E        N  +  Q+  
Sbjct: 12  PPNIGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIYKNFAEFYQQNK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
               Q    ++ +K+   Q   +    L+ G E +GL     E        + M    ++
Sbjct: 72  DK--QIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQLKIPMHKNSRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 130 LNLSNSVAVILYGALNNIG 148


>gi|302205595|gb|ADL09937.1| Putative tRNA/rRNA methyltransferase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330148|gb|ADL20342.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275830|gb|ADO25729.1| tRNA/rRNA methyltransferase (SpoU) [Corynebacterium
           pseudotuberculosis I19]
          Length = 176

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P N G  +R          +        E   L ++     +        NL
Sbjct: 26  IIFDQPVIPPNTGNAIRMCAGTGAHLHLAGPLGFNLEEKNLRRAGLDYHDLAEVSIHENL 85

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
                 +     +    ++  K            AL+ G E  GL  +T      T +  
Sbjct: 86  ERCFDSL--PHTRIFAFTTHGKTHHSDIRWESGDALLFGTEPTGLAEETLVHPRITQLVR 143

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNAAAVA Y       
Sbjct: 144 IPMLPGRRSMNLSNAAAVAAYEVWRQLG 171


>gi|251781836|ref|YP_002996138.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390465|dbj|BAH80924.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 198

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 8/169 (4%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            +    +L+PT     NS+  +VL     P N G I R+  A +    I      P +  
Sbjct: 16  IVMRKEILNPTYKE-ENSRNHVVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDR 74

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
            + ++     + +      +L D + +        I   +D     E    +     + G
Sbjct: 75  KMKRAGLDYWDKLDVRFYDSLEDFVAQCQGK-LHLISKFADKIYSEETYADDQPHYFLFG 133

Query: 235 AEGKGLRPK-TQETATSMAHLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            E  GL     +E A     + M    +++LNVSN   V +  Y     
Sbjct: 134 REDTGLPEAFMREHAEKALRIPMNDDHVRSLNVSNT--VCMVVYEALRQ 180


>gi|310778265|ref|YP_003966598.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
 gi|309747588|gb|ADO82250.1| tRNA/rRNA methyltransferase (SpoU) [Ilyobacter polytropus DSM 2926]
          Length = 150

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P+N G I RS V  +    +        +   + ++       +      +L
Sbjct: 3   IVLLNPEIPYNTGNIGRSCVLTNTSLHLIKPMGFSLDEKQVKRAGLDYWNSVDLHTWDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254
            + ++      F     ++ +KK            ++ G E +G+  +  E        +
Sbjct: 63  EELIKANPDSNF--YFATTKTKKKYSDVKYEKNDFIVFGPESRGVPEEILEANKENCITI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M  + ++LN+SN+AA+ LY     
Sbjct: 121 PMIKMGRSLNLSNSAAIILYEALRQ 145


>gi|319940793|ref|ZP_08015132.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
 gi|319805675|gb|EFW02456.1| RNA methyltransferase [Sutterella wadsworthensis 3_1_45B]
          Length = 156

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G ++R          +        E   + ++     E+       N 
Sbjct: 4   VVLVHPEIPPNTGNVIRLCANTGASLHLIRPLGFSLEDKHMKRAGLDYWEYATLKIHDNW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L   H    +   +++       Q         I GAEG GL    +    A +   
Sbjct: 64  EAFLAAEHPNPERMFAMTTKGSTVFSQLKFIPGDWFIFGAEGSGLPDDIRSAFSAQNRIR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 124 LPMRPDNRSLNLSNAVAVTVFEAWRQ 149


>gi|299136114|ref|ZP_07029298.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
 gi|298602238|gb|EFI58392.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX8]
          Length = 270

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 31/183 (16%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL-------AK 178
           L A   + L +VL    +P NIGA  R+   F    +     Y+    A          K
Sbjct: 5   LTAAERAHLTVVLVGARNPSNIGAAARAMQDFGFRDLRIVNDYAAPFEAAQLEDSQQNVK 64

Query: 179 SASGALEHIPYIR-ISNLTDALQ---------KMHSWGFQ--TIGLSSDSKK------PL 220
           SA GA   +   R  S+L +A+           +     +   + L   +         L
Sbjct: 65  SAVGAASVMAEARRYSSLAEAIADCTLIVGTTAIGERDVRREVVALQQAAPTMLGQLRTL 124

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-----ALNVSNAAAVALYI 275
                  ++AL+ G+E  GL  +     + +  + M    +     ++N+  + AV LY 
Sbjct: 125 TAADHPQQVALLFGSEKTGLTNEQLSHCSLLTTIPMFAP-EAARHLSMNLGQSVAVCLYE 183

Query: 276 TQN 278
              
Sbjct: 184 LTR 186


>gi|289434200|ref|YP_003464072.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170444|emb|CBH26984.1| RNA methyltransferase, TrmH family, group 2 [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 169

 Score = 68.5 bits (167), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 14/152 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      ++
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTYYDSM 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQ----ET 247
            +  +   + G +   ++   +        +D  A     I G E  GL  +      E 
Sbjct: 65  DEFFE--KNHGGEFYYITKFGRHLYSDIDYSD-TAKDYFFIFGKETTGLPDELLQANEEH 121

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M   I++LN+SN AAV  Y     
Sbjct: 122 C---LRIPMTDHIRSLNLSNTAAVLAYEALRQ 150


>gi|187250688|ref|YP_001875170.1| putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum
           Pei191]
 gi|186970848|gb|ACC97833.1| Putative tRNA/rRNA methyltransferase (SpoU) [Elusimicrobium minutum
           Pei191]
          Length = 148

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I RS VA      +  K     E   + +S      ++ Y    + 
Sbjct: 3   IVLINPEIPFNTGNIGRSCVATGTKLHLVGKLGFKIEDKEIRRSGLDYWVNLDYKTYKDF 62

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA 252
              L  +      F     S+  KK            LI G+E  G   +  ET    + 
Sbjct: 63  DGFLSSVENKESMFFF---STKGKKSFWDIKYPPDSYLIFGSESCGFPKEIYETYKEKLF 119

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M G +++LN+S +A V L+     
Sbjct: 120 TIPMTGPVRSLNLSTSAGVVLFEALRQ 146


>gi|302348245|ref|YP_003815883.1| rRNA methylase [Acidilobus saccharovorans 345-15]
 gi|302328657|gb|ADL18852.1| rRNA methylase [Acidilobus saccharovorans 345-15]
          Length = 245

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 20/164 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PSESAVLAKSASGALEHIPYI 190
           +L +V   +  P N+G I R +  F  D +      +         AK++  A +     
Sbjct: 4   RLRLVAVGIEGPVNLGYIFRLSENFEVDELYLVSPTASVAESLRWAAKASDMAWKA---T 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ------------EIKNDKIALILGAEGK 238
            + +L +AL+ +             S + L +              +   +AL++G E  
Sbjct: 61  VVGSLKEALRDVE---LSVCTSDESSARDLLRSPVSPEQAAELMIARKGTVALVVGRESV 117

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           GL          +  +       ALNVSNA AV LY       K
Sbjct: 118 GLTRDELAQCDLLCTIPASPKYTALNVSNATAVLLYEIYKARRK 161


>gi|283777832|ref|YP_003368587.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
 gi|283436285|gb|ADB14727.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
          Length = 170

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L ++L H   P N G I RS VA      +            L ++     +H+ +  
Sbjct: 11  PRLHVILWHPEIPPNTGNIGRSCVAVGAKLWLVRPLGFDISEKQLRRAGLDYWQHLEWEA 70

Query: 192 ISNLTDA-------LQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           + +L +         ++   W F   G S  S    EQ        L+ G E  GL  + 
Sbjct: 71  VDSLDEIRAKIPEPFEQQRVWLFTKFGQSRYSDVTYEQGD-----VLLFGCESAGLPEEI 125

Query: 245 QET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                +++   L M   +++LN+S++A  A+Y       
Sbjct: 126 VSQFPSSAKLRLPMRPQVRSLNLSSSATAAMYEVIRQIG 164


>gi|167628241|ref|YP_001678740.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
           modesticaldum Ice1]
 gi|167590981|gb|ABZ82729.1| RNA methyltransferase, trmh family, group 2 [Heliobacterium
           modesticaldum Ice1]
          Length = 153

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R      C+  +        +   L ++       +      N 
Sbjct: 4   IVLVEPEIPPNTGNVARLCAGTGCELHLIKPLGFSIDDKQLKRAGLDYWHLVKVHVHDNW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
              L+K          LS+  KK   +         + G E KGL  +   E    +A +
Sbjct: 64  AAFLEKHGQANLLL--LSTKGKKAYHEFAYRPGDFFVFGKETKGLSEEILSEWPERVARI 121

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            +    ++LN+SNA AV ++    QN FA
Sbjct: 122 PLVADARSLNLSNAVAVVVFEGLRQNGFA 150


>gi|167947104|ref|ZP_02534178.1| hypothetical protein Epers_11377 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 173

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 5/128 (3%)

Query: 107 KEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK 166
           +E+  Q LA          L        ++VLDH+    N+  I RSA AF    I    
Sbjct: 12  RESRDQALARYIKQKNRNLLAQPGPHDFIIVLDHMKAGFNVAKIFRSAEAFGAHEIHL-- 69

Query: 167 RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN 226
               +        A G+ + +P        ++  ++   G+Q I L +     L      
Sbjct: 70  ---VNIGPFDPSPAKGSFKKVPARFFERFEESHAELKRRGYQLITLDAGCGDSLIDTPLP 126

Query: 227 DKIALILG 234
            K A ILG
Sbjct: 127 QKCAFILG 134


>gi|86358645|ref|YP_470537.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86282747|gb|ABC91810.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 153

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A        +            L +S    +      R ++         
Sbjct: 14  PGNTGTLLRLAACLGFAVDLIEPAGFNVSDRDLKRSGMDYIAAAALTRHASWDRFEAWHA 73

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + I  S+ + +     +      L+ G E  G+     E A +   + M    +++
Sbjct: 74  ATGRRLILASTKAAERYTDFVFRPDDVLLFGRESAGVPDHVHERADACILIPMVEGQRSI 133

Query: 264 NVSNAAAVALYITQNH 279
           NV+ +AA+ +      
Sbjct: 134 NVAISAAMIVGEAMRQ 149


>gi|327188344|gb|EGE55561.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
           [Rhizobium etli CNPAF512]
          Length = 154

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 43/135 (31%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR A        +            L +S    +      R  +         +
Sbjct: 16  GNTGTILRLAACLGFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALTRHVSWDRFEAWRAT 75

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + I  S+ +              L+LG E  G+     E A +   + M    +++N
Sbjct: 76  TGRRLILASTKAADRYTDFTFRPDDILLLGRESAGVPDHVHERADARILIPMVEGQRSIN 135

Query: 265 VSNAAAVALYITQNH 279
           V+ +AA+ +      
Sbjct: 136 VAVSAAMIVGEAMRQ 150


>gi|300857865|ref|YP_003782848.1| hypothetical protein cpfrc_00448 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685319|gb|ADK28241.1| hypothetical protein cpfrc_00448 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 157

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P N G  +R          +        E   L ++     +        NL
Sbjct: 7   IIFDQPVIPPNTGNAIRMCAGTGAHLHLAGPLGFNLEEKNLRRAGLDYHDLAEVSIHENL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
                 +     +    ++  K            AL+ G E  GL  +T      T +  
Sbjct: 67  ERCFDSL--PHTRIFAFTTHGKTHHSDIRWESGDALLFGTEPTGLAEETLVHPRITQLVR 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNAAAVA Y       
Sbjct: 125 IPMLPGRRSMNLSNAAAVAAYEVWRQLG 152


>gi|149375019|ref|ZP_01892792.1| rRNA methylase [Marinobacter algicola DG893]
 gi|149360908|gb|EDM49359.1| rRNA methylase [Marinobacter algicola DG893]
          Length = 284

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 19/166 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N Q+ +VL   +   NIGA+ R+        +      S  + A  A+ A+GA + +   
Sbjct: 15  NDQIRIVLVETSHSGNIGAVARAMKNMGLGNLWLVNPVSFPDEASYAR-AAGASDILDKA 73

Query: 191 RI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-------------DKIALILGAE 236
            + S L +A+          +G S+  +K     I                ++AL+ G E
Sbjct: 74  TVVSTLDEAIADC----VCVMGTSARGRKVPWPVIAPPGAAAKASQQSEAGQVALVFGRE 129

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             GL  +  +      H+       +LN++ A  V  Y  + H+ K
Sbjct: 130 NHGLSNEELQRCHFHIHIPSNPDYSSLNLAMAVQVMCYELRMHYLK 175


>gi|33240594|ref|NP_875536.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238122|gb|AAQ00189.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 246

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 18/144 (12%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRISNLTDALQKMHS 204
           N+G+I R    F  D +          +    K A  G          SNL DA+     
Sbjct: 22  NLGSIARLCENFGVDELRLVSPRCDPMNIETQKMAVHGKRFLKNACIYSNLLDAVNDC-- 79

Query: 205 WGFQTIGLSS---DSKKPLE----------QEIKNDKIALILGAEGKGLRPKTQETATSM 251
              + +           PL           +    D IA+I G E +GL     + A  +
Sbjct: 80  --VRVVATCGRIDHGDIPLHTSKNALQWLLETNPKDPIAIIFGREDRGLSNSELQIAQKI 137

Query: 252 AHLHMPGIIKALNVSNAAAVALYI 275
             L       +LN+S+A A+ L+ 
Sbjct: 138 ITLKTSEKYPSLNLSHAVAIVLHE 161


>gi|320100237|ref|YP_004175829.1| tRNA/rRNA methyltransferase SpoU [Desulfurococcus mucosus DSM 2162]
 gi|319752589|gb|ADV64347.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurococcus mucosus DSM
           2162]
          Length = 236

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 21/161 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL  +    N+G I R+ V F  D +   K  + S    L  +A G       +   +L
Sbjct: 4   VVLVGIEGAVNLGVIARTCVNFGVDELYIVKPVA-SLDEALNYAAKGRGFLENAVVTDSL 62

Query: 196 TDALQKMHSWGF-QTIGLSSDS---KKPLEQEI-----------KNDKIALILGAEGKGL 240
            +A++     G    +  S +       L Q +           +   +A++ G E  GL
Sbjct: 63  DEAIK-----GVDMIVATSDEGYSESDMLRQAVDLSDFAERIFPRTRSVAILFGRESTGL 117

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +    A  +  +        LNVS A AV L+    H  
Sbjct: 118 TREEIGRADILVTIPANPAYPVLNVSQAVAVVLWELWKHRG 158


>gi|319953759|ref|YP_004165026.1| tRNA/rRNA methyltransferase (spou) [Cellulophaga algicola DSM
           14237]
 gi|319422419|gb|ADV49528.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga algicola DSM
           14237]
          Length = 151

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P+N G I R ++A      +            + ++     +HI     
Sbjct: 2   PLHIVLFEPEIPNNTGNIGRLSLASGSHLHLVKPFGFELSDKRVKRAGLDYWQHISLTIY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
            ++ D    + +   + +  SS   K        D + LI G E KGL  + T + + S+
Sbjct: 62  DSIEDF--YLKNSDKEFVYFSSHGDKTHWDIDFKDNLFLIFGKESKGLPEEITAQNSNSL 119

Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
             + +    +++LN++NA ++ +Y      +
Sbjct: 120 YKIPLHSDHVRSLNLANAVSIVVYEGLRQLS 150


>gi|311109231|ref|YP_003982084.1| rRNA methylase SpoU [Achromobacter xylosoxidans A8]
 gi|310763920|gb|ADP19369.1| SpoU rRNA methylase family protein 2 [Achromobacter xylosoxidans
           A8]
          Length = 156

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V   +  P N G  +R          +        + A + ++     E  P    
Sbjct: 3   HVILVCPEI--PPNTGNAIRLCANTGAQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L +AL    +       L++ +++ +           + G E  GL  + Q       
Sbjct: 61  DTLQEALADTGAAPSSIYALTTHAQRSVADIGFKPGDVFVFGRETAGLSEEHQAMFPPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149


>gi|326796919|ref|YP_004314739.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas
           mediterranea MMB-1]
 gi|326547683|gb|ADZ92903.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas
           mediterranea MMB-1]
          Length = 157

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +        +   L ++     E     + +N 
Sbjct: 4   IVLYQPEIPPNTGNVIRLCANTGYQLHLIEPFGFDLDDKKLRRAGLDYHEFTHVKKYANW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
              + + +        L++   +   +    +   L+ G E +GL  +  E         
Sbjct: 64  DAFIAQ-NENIGTLYALTTKGSRTHSEAEFKENDVLVFGPETRGLPAEFIEALPKPQRLR 122

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           L M    ++LN+SN  AV +Y +    
Sbjct: 123 LPMQADSRSLNLSNTVAVMVYESWRQL 149


>gi|295395717|ref|ZP_06805908.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971417|gb|EFG47301.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 206

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD  R+ +  + +++     NIG+++R+A AF+   +    +          + A   
Sbjct: 48  ADLDRTRH-EFHVAVENWQHDLNIGSVVRTANAFNASAVHIVGK-----KRWNRRGAMVT 101

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGLR 241
             +             Q         IG+    DS   LE      +   + G EG GL 
Sbjct: 102 DRYQHIYHHETAEALAQWCQERELPLIGIDNFPDSVA-LETYDLPRECVFLFGQEGPGLT 160

Query: 242 PKTQETATSMAHLHMPGIIKALN 264
            +      ++  +   G  +++N
Sbjct: 161 DEAHHACEAVLSIEQYGSTRSMN 183


>gi|190892787|ref|YP_001979329.1| tRNA/rRNA aminotransferase/methyltransferase [Rhizobium etli CIAT
           652]
 gi|190698066|gb|ACE92151.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
           [Rhizobium etli CIAT 652]
          Length = 153

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 43/135 (31%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G ILR A        +            L +S    +      R  +         +
Sbjct: 15  GNTGTILRLAACLGFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALTRHVSWDRFEAWRAT 74

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + I  S+ +              L+LG E  G+     E A +   + M    +++N
Sbjct: 75  TGRRLILASTKAADRYTDFTFRPDDILLLGRESAGVPDHVHERADARILIPMVEGQRSIN 134

Query: 265 VSNAAAVALYITQNH 279
           V+ +AA+ +      
Sbjct: 135 VAVSAAMIVGEAMRQ 149


>gi|88858423|ref|ZP_01133065.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata
           D2]
 gi|88820040|gb|EAR29853.1| putative tRNA/rRNA methyltransferase [Pseudoalteromonas tunicata
           D2]
          Length = 154

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R  +L
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFEWDDKRVRRAGLDYHEFSHVKRHPSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L        +    ++    P  Q        L+ G E +GL  +  E+        
Sbjct: 64  ESYLATEKPK--KVYACTTKGSGPYHQAQFAAGDCLLFGPETRGLPMEIIESLPNEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    +++N+SNA AV +Y +    
Sbjct: 122 IPMQPNSRSMNLSNAVAVFIYESWRQL 148


>gi|297588471|ref|ZP_06947114.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
 gi|297573844|gb|EFH92565.1| TrmH family RNA methyltransferase [Finegoldia magna ATCC 53516]
          Length = 155

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +  +L +S     + +  +   ++
Sbjct: 4   IVLLEPEKPSNTGNIGRTCVLTNSRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIHDDM 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
            + L+ +     +   + + +     +    D    + G E  G+      +       +
Sbjct: 64  DEFLEYIKGND-RVFYVETFATNYYHELEYQDGDFFVFGKESSGIDKDLVDKHKDHSIKI 122

Query: 255 HMPGIIK-ALNVSNAAAVALYITQNHF 280
            M   I  +LN++N+  + L+      
Sbjct: 123 PMNMTIDRSLNLANSCNIVLFEALRQI 149


>gi|153002625|ref|YP_001368306.1| RNA methyltransferase [Shewanella baltica OS185]
 gi|151367243|gb|ABS10243.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS185]
          Length = 154

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R          +        E   L ++     +     R  +    L+ M   
Sbjct: 14  NTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKDFDAFLEAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     E+        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHTELTFAKDDVLLFGPETRGLPMSIIESIPTEQRLRIPMAATSRSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  Y      
Sbjct: 132 NLSNAVAIISYEAWRQL 148


>gi|90023058|ref|YP_528885.1| hypothetical protein Sde_3418 [Saccharophagus degradans 2-40]
 gi|89952658|gb|ABD82673.1| tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
          Length = 177

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 11/136 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GAI+R+A  F  + ++ T +   S++A        A +HIP   + NL  A+    
Sbjct: 17  PTNVGAIMRAAGCFGANYVLYTGQRY-SKAAKFHTDTKQASQHIPLRGVDNLATAV---- 71

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIK 261
           S G + + +   +    L      +    + G E  G +     + A +  ++   G   
Sbjct: 72  SAGVKIVCVDLIEGAVALPDFTHPEHALYVFGPE-DGTINQSIIDAADAAVYIPTKGC-- 128

Query: 262 ALNVSNAAAVALYITQ 277
            LN++    V LY  Q
Sbjct: 129 -LNLAATVNVVLYDRQ 143


>gi|313471791|sp|A1WBM9|TRML_ACISJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 162

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  ++ ++     E+    R    
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRHPGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
           T  L+ M     +   L++   + +           + GAE +GL P+ +ET   A    
Sbjct: 64  TALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPELRETFPPA-QRL 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 123 RLPMLPNQRSLNLSNAVAVTVYEAWRQ 149


>gi|222112034|ref|YP_002554298.1| tRNA/rRNA methyltransferase SpoU [Acidovorax ebreus TPSY]
 gi|221731478|gb|ACM34298.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax ebreus TPSY]
          Length = 162

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  ++ ++     E+    R    
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRHPGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
           T  L+ M     +   L++   + +           + GAE +GL P+ +ET   A    
Sbjct: 64  TALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPELRETFPPA-QRL 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 123 RLPMLPNQRSLNLSNAVAVTVYEAWRQ 149


>gi|121595834|ref|YP_987730.1| tRNA/rRNA methyltransferase SpoU [Acidovorax sp. JS42]
 gi|120607914|gb|ABM43654.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax sp. JS42]
          Length = 189

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  ++ ++     E+    R    
Sbjct: 31  IVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDPLMRRAGLDYHEYAEVRRHPGW 90

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
           T  L+ M     +   L++   + +           + GAE +GL P+ +ET   A    
Sbjct: 91  TALLRDMQPDLSRMFALTTHGTQSVYDTGFLPGDWFVFGAESRGLPPELRETFPPA-QRL 149

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 150 RLPMLPNQRSLNLSNAVAVTVYEAWRQ 176


>gi|75907629|ref|YP_321925.1| RNA methyltransferase TrmH [Anabaena variabilis ATCC 29413]
 gi|75701354|gb|ABA21030.1| RNA methyltransferase TrmH, group 1 [Anabaena variabilis ATCC
           29413]
          Length = 243

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +VL     P N+GAI R    F    ++         S    + A  A E +   I +  
Sbjct: 8   VVLVEPAGPLNVGAIARVMKNFGLAQLVLVNPQCDPLSEEAMRMAVHAKEILESAITVPT 67

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGKGLRP 242
           L +AL        + I  +                 P   E  +   ALI G E +GL  
Sbjct: 68  LPEALHGC----VRAIATTGRDNDRGLTLETPRIALPWLLEETSQPSALIFGREDRGLSN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    A     +       +LN++ A  +  Y    + 
Sbjct: 124 EELIYAQRFIRIPTSPDYLSLNLATAVGICCYELAQNL 161


>gi|294789639|ref|ZP_06754873.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri
           ATCC 29453]
 gi|294482440|gb|EFG30133.1| RNA methyltransferase, TrmH family, group 2 [Simonsiella muelleri
           ATCC 29453]
          Length = 154

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             ++L     P N G I+R      CD  +      P +S+ + ++     E    +   
Sbjct: 2   FTIILYQPEIPPNTGNIIRLCANTGCDLHLVKPLGFPLDSSKMKRAGLDYHEFANIVVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
           N  + +  +   G +   L++  K   ++         + GAE +GL  +   +      
Sbjct: 62  NWDNCMVAL--AGRRIFALTTKGKTRPDKVAFLPHDVFLFGAETRGLPAEILASLPDNQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
               M    +++N+SN  A+ ++     
Sbjct: 120 IRFPMMPDNRSMNLSNTVAITVFEAWRQ 147


>gi|284054898|ref|ZP_06385108.1| RNA methyltransferase [Arthrospira platensis str. Paraca]
 gi|291566347|dbj|BAI88619.1| probable tRNA/rRNA methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 255

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 8/138 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           N+G+I R         ++    +    S      A  A + +   + + +L  AL     
Sbjct: 25  NVGSIARVMKNMGLTQMVLVSPHCDPMSCEAKTMAVHAQDVLESAQIVDSLPQALIGCQK 84

Query: 205 WGFQTIGLSSDSKKPLEQ------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
               T        + LE        +     ALI G E +GL       A  +  +    
Sbjct: 85  A-IATTARDRSFDRTLEHPRTTLPWLLQSPAALIFGPEDRGLSNTELNYAQRIVRIPSSS 143

Query: 259 IIKALNVSNAAAVALYIT 276
             ++LN++ A AV  Y  
Sbjct: 144 AYESLNLAQAVAVCCYEL 161


>gi|68074789|ref|XP_679311.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500033|emb|CAH94615.1| hypothetical protein PB000715.00.0 [Plasmodium berghei]
          Length = 494

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 3/152 (1%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           + + L+++   ++   N+  + R+   F+   ++ +      +     K +S A + +  
Sbjct: 342 KKNNLIVIASLIDKVPNLAGLCRTCEIFNVKKLLLSNINIVKDFQ-FQKISSTANKWMNI 400

Query: 190 IR-ISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                             +  IGL  ++  K L   I  +   LILG E +GL       
Sbjct: 401 QELKKKDIIKYLIKKKKKYSIIGLEQTNDSKRLNDFIFPENCILILGDEKEGLPSSILLL 460

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +   GII++LNV  +AA+ +Y     
Sbjct: 461 LHHCVEIPGHGIIRSLNVHVSAAITIYEYFKQ 492


>gi|217964965|ref|YP_002350643.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           HCC23]
 gi|290893505|ref|ZP_06556489.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|217334235|gb|ACK40029.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           HCC23]
 gi|290557006|gb|EFD90536.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|307570475|emb|CAR83654.1| RNA methyltransferase, TrmH family [Listeria monocytogenes L99]
          Length = 169

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      +L
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ----ETA 248
            +  +   + G +   ++   +        +D       + G E  GL         E  
Sbjct: 65  DEFFK--KNEGGEFYYITKFGRHVYSDIDYSDPNKDYFFVFGKETTGLPDALLQENEENC 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I++LN+SN AA+  Y     
Sbjct: 123 ---LRIPMTDHIRSLNLSNTAAILAYEALRQ 150


>gi|15924845|ref|NP_372379.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927429|ref|NP_374962.1| hypothetical protein SA1672 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283525|ref|NP_646613.1| hypothetical protein MW1796 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49484097|ref|YP_041321.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49486674|ref|YP_043895.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82751510|ref|YP_417251.1| rRNA methylase-like protein [Staphylococcus aureus RF122]
 gi|156980171|ref|YP_001442430.1| hypothetical protein SAHV_1840 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315186|ref|ZP_04838399.1| hypothetical protein SauraC_03248 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732513|ref|ZP_04866678.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253735264|ref|ZP_04869429.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006643|ref|ZP_05145244.2| hypothetical protein SauraM_09240 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425967|ref|ZP_05602391.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428632|ref|ZP_05605030.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431269|ref|ZP_05607646.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433949|ref|ZP_05610307.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436865|ref|ZP_05612909.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M876]
 gi|258413723|ref|ZP_05681996.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
 gi|258423133|ref|ZP_05686027.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9635]
 gi|258438431|ref|ZP_05689715.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
 gi|258443876|ref|ZP_05692215.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
 gi|258447331|ref|ZP_05695478.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|258448186|ref|ZP_05696313.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|258453381|ref|ZP_05701364.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5937]
 gi|269203492|ref|YP_003282761.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282895154|ref|ZP_06303373.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A8117]
 gi|282904430|ref|ZP_06312318.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906253|ref|ZP_06314108.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909172|ref|ZP_06316990.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911478|ref|ZP_06319280.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914651|ref|ZP_06322437.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282917125|ref|ZP_06324883.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282919616|ref|ZP_06327351.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282924996|ref|ZP_06332662.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282928594|ref|ZP_06336193.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A10102]
 gi|283770939|ref|ZP_06343831.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283958608|ref|ZP_06376059.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293503722|ref|ZP_06667569.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510743|ref|ZP_06669448.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M809]
 gi|293537285|ref|ZP_06671965.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295428433|ref|ZP_06821062.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276987|ref|ZP_06859494.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
 gi|297207427|ref|ZP_06923864.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297590600|ref|ZP_06949238.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|300911511|ref|ZP_07128956.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701648|dbj|BAB42941.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247627|dbj|BAB58017.1| putative rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204966|dbj|BAB95661.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49242226|emb|CAG40933.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49245117|emb|CAG43583.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|82657041|emb|CAI81478.1| rRNA methylase homolog [Staphylococcus aureus RF122]
 gi|156722306|dbj|BAF78723.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253723794|gb|EES92523.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253726671|gb|EES95400.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257271661|gb|EEV03807.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275473|gb|EEV06960.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278217|gb|EEV08865.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282042|gb|EEV12179.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284216|gb|EEV14339.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M876]
 gi|257839510|gb|EEV63981.1| SpoU rRNA methylase [Staphylococcus aureus A9763]
 gi|257846697|gb|EEV70717.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9635]
 gi|257848475|gb|EEV72466.1| SpoU rRNA methylase [Staphylococcus aureus A9299]
 gi|257851282|gb|EEV75225.1| SpoU rRNA methylase [Staphylococcus aureus A8115]
 gi|257853918|gb|EEV76874.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|257858425|gb|EEV81301.1| SpoU rRNA methylase [Staphylococcus aureus A6224]
 gi|257864473|gb|EEV87218.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5937]
 gi|262075782|gb|ACY11755.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
 gi|282313362|gb|EFB43758.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C101]
 gi|282317426|gb|EFB47800.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus C427]
 gi|282319612|gb|EFB49964.1| RNA methyltransferase, TrmH family, group 2 protein [Staphylococcus
           aureus subsp. aureus D139]
 gi|282321832|gb|EFB52157.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325173|gb|EFB55483.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327436|gb|EFB57731.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331545|gb|EFB61059.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282589803|gb|EFB94888.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A10102]
 gi|282596048|gb|EFC01012.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus C160]
 gi|282762498|gb|EFC02639.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A8117]
 gi|283461086|gb|EFC08176.1| RNA methyltransferase TrmH family group 2 [Staphylococcus aureus
           subsp. aureus H19]
 gi|283471126|emb|CAQ50337.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790757|gb|EFC29574.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|285817535|gb|ADC38022.1| tRNA (cytosine34-2-O-)-methyltransferase [Staphylococcus aureus
           04-02981]
 gi|290920130|gb|EFD97198.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095388|gb|EFE25653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466634|gb|EFF09155.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127833|gb|EFG57470.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296887890|gb|EFH26786.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297575486|gb|EFH94202.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MN8]
 gi|298695124|gb|ADI98346.1| rRNA methylase -like protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300887143|gb|EFK82343.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH70]
 gi|312437680|gb|ADQ76751.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830227|emb|CBX35069.1| spoU rRNA Methylase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315195767|gb|EFU26154.1| hypothetical protein CGSSa00_08920 [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|323438849|gb|EGA96586.1| rRNA methylase-like protein [Staphylococcus aureus O11]
 gi|323441693|gb|EGA99338.1| rRNA methylase-like protein [Staphylococcus aureus O46]
 gi|329732977|gb|EGG69321.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 156

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     E +      ++
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQET-ATSM 251
               +  +   +    L+   KK          +     I G E  GL    +E    + 
Sbjct: 65  EAFFEATNGEYYL---LTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSEHIRSLNLSNTAALLIYEALRQ 149


>gi|330961879|gb|EGH62139.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 151

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+      ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              L+K+ +   +    ++   +P          A + G E +GL     +   +     
Sbjct: 64  ASCLEKIGNP--RLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLNSDHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|308050472|ref|YP_003914038.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
 gi|307632662|gb|ADN76964.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
          Length = 244

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 18/161 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P NIG+  R+        +   +     +   +A +A  +      +   +L
Sbjct: 7   IVLVGTTHPGNIGSAARAMKTMGLSQLFLAEPKVAPDGQSIALAAGASDLLKNLVVTDDL 66

Query: 196 TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLRP 242
             A+          IG S+             ++   L  E     +AL+ G E  GL  
Sbjct: 67  ASAIADCS----LVIGTSARSRTLSWPMLDAREAGVKLASEANTGPVALVFGRENSGLSN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
           +  +       +       +LN++ A  +  Y T+  H A+
Sbjct: 123 EELQMCHYHVCIPANPEYSSLNLAQAVQLLSYETRMAHLAQ 163


>gi|226365700|ref|YP_002783483.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226244190|dbj|BAH54538.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 155

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R      C+  +            L ++     +        NL  A   + 
Sbjct: 12  PPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLKRAGLDYHDLASVTVHENLEAAWAAVG 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    ++ +              L+ G E  GL  +       T    + M    +
Sbjct: 72  PA--RVFAFTAHATVSYADIAYRPGDVLLFGPEPTGLSAEVLADPHVTERVRIPMLPGRR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNAAA+  Y     
Sbjct: 130 SLNLSNAAALVTYEAWRQ 147


>gi|126172465|ref|YP_001048614.1| RNA methyltransferase [Shewanella baltica OS155]
 gi|125995670|gb|ABN59745.1| RNA methyltransferase, TrmH family, group 2 [Shewanella baltica
           OS155]
          Length = 154

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R          +        E   L ++     +     R  +    L+ M   
Sbjct: 14  NTGNIIRLCANNGSQLHLIEPLGFDLEEKKLRRAGLDYADLTNVTRHKDFDAFLEAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     E+        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMAIIESIPTEQRLRIPMAATSRSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  Y      
Sbjct: 132 NLSNAVAIISYEAWRQL 148


>gi|329118733|ref|ZP_08247433.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465168|gb|EGF11453.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 154

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R       D  +      P +SA + ++     E        
Sbjct: 2   FTVVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFARVSVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS--M 251
           +  + L  +   G +   L++  +   +Q         + G E +GL  +  +       
Sbjct: 62  SYAECLAAL--AGRRIFALTTKGRTRPDQVSFQAGDVFLFGPETRGLPAEILDGLPQERK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             L M    +++N+SN  AV ++    QN F+
Sbjct: 120 IRLPMKSGSRSMNLSNTVAVIVFEAWRQNGFS 151


>gi|171060485|ref|YP_001792834.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170777930|gb|ACB36069.1| RNA methyltransferase, TrmH family, group 2 [Leptothrix cholodnii
           SP-6]
          Length = 156

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G ++R A    C+  +        +  +L ++     E+ P  R +  
Sbjct: 4   IVLVHPEIPPNTGNVIRLAANTGCELHLIEPLGFSMDDRLLRRAGLDYHEYAPVRRHAGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L             ++   + L + +      L+ G E  GL    +E         
Sbjct: 64  AAFLADQRPDPATLYAFTTRGSRSLAEVVWPADAWLVFGCETSGLPEDVREQIAPAQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AVA++     
Sbjct: 124 LPMRAGQRSLNLSNAVAVAVFDAWRQ 149


>gi|319934859|ref|ZP_08009304.1| RNA methyltransferase [Coprobacillus sp. 29_1]
 gi|319810236|gb|EFW06598.1| RNA methyltransferase [Coprobacillus sp. 29_1]
          Length = 168

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 12/150 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I+R+ VA      I        +   + ++    ++ +      N 
Sbjct: 4   IVLVHPAIPQNTGNIMRTCVATHSKLHIIKPMGFSLDDKHMKRAGLDYIKDLEMEIYENW 63

Query: 196 TDALQKMHSWG----FQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TAT 249
            + +    + G    F     L    +  +  + +     ++ G E  G+     +    
Sbjct: 64  EEFVT--QNPGDYHFFTRYSKLCYTDQNYVSDQDQY----ILFGHEHDGIPHDILKDHLD 117

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M G  ++LN+SN  A+ +Y     
Sbjct: 118 ECVRIPMDGNARSLNLSNCVAIGIYEVLRQ 147


>gi|226305480|ref|YP_002765440.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226184597|dbj|BAH32701.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 154

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R      C+  +            L ++     +        NL  A + + 
Sbjct: 12  PPNTGNAIRMVAGTGCELHLVGPLGFDLSEPKLKRAGLDYHDLATVTVHENLAAAWEAVT 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAHLHMPGIIK 261
               +    ++ +              L+ G E  GL  +    E  T    + M    +
Sbjct: 72  PA--RVFAFTAHATTSYADIAYQPGDVLLFGPEPTGLSEEVLADEHITERLRIPMLPGRR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNAAA+  Y     
Sbjct: 130 SLNLSNAAALVTYEAWRQ 147


>gi|113972063|ref|YP_735856.1| RNA methyltransferase [Shewanella sp. MR-4]
 gi|117922366|ref|YP_871558.1| RNA methyltransferase [Shewanella sp. ANA-3]
 gi|113886747|gb|ABI40799.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-4]
 gi|117614698|gb|ABK50152.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. ANA-3]
          Length = 154

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R          +        E   L ++     +     R  N    L+ M   
Sbjct: 14  NTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKNFDAFLEAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     E+        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMPIIESIPTEQRLRIPMAATSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQLG 149


>gi|88813043|ref|ZP_01128285.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis
           Nb-231]
 gi|88789676|gb|EAR20801.1| RNA methyltransferase, TrmH family, group 2 [Nitrococcus mobilis
           Nb-231]
          Length = 169

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 4/163 (2%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           ++  +L  V  + L +VL     P N G ++R          +        +   L ++ 
Sbjct: 1   MIEHSLTDVNATLLHVVLLEPEIPANTGNVIRLCANTGMRLHLIHPLGFYMDDRRLRRAG 60

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
               E+      +      + +     +    S+ +++           AL+ G+E +GL
Sbjct: 61  LDYREYARVEEHAGYAAFCRTVQ--PMRIFAFSASARRIFHAVRFQPGDALLFGSESRGL 118

Query: 241 RPKTQETAT--SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            P   E     ++  L M    ++LN+SNA AVA++       
Sbjct: 119 PPNLLEAFDPKAVLRLPMVPGNRSLNLSNAVAVAVFEAWRQLG 161


>gi|304392671|ref|ZP_07374611.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130]
 gi|303295301|gb|EFL89661.1| 23S rRNA methyltransferase [Ahrensia sp. R2A130]
          Length = 210

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 21/151 (13%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTK-----RYSPSESAVLAKSASGALEHIPYIRIS 193
           + ++ P N G + R+A  F    + T        ++P+++         + +H+P+   S
Sbjct: 12  EGISKPMNFGNLARTAHGFGASFVFTLAPGKRINHAPADTT-------NSHDHMPWYTYS 64

Query: 194 NLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSM 251
            + D +Q       + +G+   D    L       + A +LG E  G L P   E    +
Sbjct: 65  GI-DTMQLPDDC--RLVGVELTDDAIALPSFRHPLRAAYLLGPE-NGSLSPDAMEKCEFI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +        LNV+ A AV +Y       +
Sbjct: 121 IKIPTAFC---LNVATAGAVIMYDRMQSLGR 148


>gi|237749573|ref|ZP_04580053.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380935|gb|EEO31026.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 156

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P + A + ++     E        N 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANSGAQLHLIEPLGFPLDDAKMRRAGLDYHEFATMKVYKNW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
            D L+KM     +    ++                 I G+E KGL P+            
Sbjct: 64  NDFLEKMTPDPSRMFAFTTRGSSIFSTLEFRPGDMFIFGSETKGLSPEIHAFFQDGHRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+ A+A+Y     
Sbjct: 124 LPMRPDNRSLNLSNSVAIAVYEAWRQ 149


>gi|325981842|ref|YP_004294244.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp.
           AL212]
 gi|325531361|gb|ADZ26082.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas sp.
           AL212]
          Length = 154

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R          +      P +   L ++     E    I   + 
Sbjct: 4   IILYQPEIPPNTGNIIRLCANTGMQLHLVKPLGFPLQDKQLLRAGLDYHEFAQIIVHDSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
            D    +     +   +++  K+  ++       A + GAE +GL     +T        
Sbjct: 64  ADCCHNLRDH--RMFAITTRGKQGYDKVSYAAGDAFLFGAESRGLPSHIMDTFPEQRRIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SN  A+  Y     
Sbjct: 122 VPMVANSRSLNLSNTVAIIAYEAWRQ 147


>gi|323126650|gb|ADX23947.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 181

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + +        I   +D     E    +     + G E  GL     +E A     +
Sbjct: 79  EDFVAQCQGK-LHLISKFADKIYSEETYADDQPHYFLFGREDTGLPEAFMREHAEKALRI 137

Query: 255 HMP-GIIKALNVSNAAAVAL--YITQNH 279
            M    +++LNVSN   V +  Y     
Sbjct: 138 PMNDDHVRSLNVSNT--VCMVVYEALRQ 163


>gi|322387233|ref|ZP_08060843.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141762|gb|EFX37257.1| TrmH family RNA methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 167

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +       L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYDCL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETATSMA 252
            + ++K+     Q   +S  ++K               + G E KGL  +  +E      
Sbjct: 65  DEFMKKIDG---QLYLISKFAEKVYSDADFTIEGNHYFLFGREDKGLPEEFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|19745529|ref|NP_606665.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|19747648|gb|AAL97164.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
          Length = 182

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D ++ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 11  DKLKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 70

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK- 243
           +      +L   + + H          +++ S+        +     + G E  GL    
Sbjct: 71  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYADGDSHY---FLFGREDTGLPEDF 127

Query: 244 TQETATSMAHLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            +E A     + M    +++LNVSN   V +  Y     
Sbjct: 128 MREHAEKALRIPMNDEHVRSLNVSNT--VCMVIYEALRQ 164


>gi|114047315|ref|YP_737865.1| RNA methyltransferase [Shewanella sp. MR-7]
 gi|113888757|gb|ABI42808.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-7]
          Length = 241

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 22/163 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PSESAVLAKSASGALEHIPYIRIS 193
           ++L   + P NIG+  R+        +   +       +S  LA  AS  L+H+  +++ 
Sbjct: 7   VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHL--VKVD 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEGKGL 240
           +L +A+          I  S+ S+      +              +  +A++ G E  GL
Sbjct: 65  SLEEAIADCS----LVIATSARSRTLDWPMLDPREAGQKLVTEGLSGPVAIVFGRENHGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
             +  +  T    +       +LN++ A  +  Y T+  H A+
Sbjct: 121 TNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQ 163


>gi|49080686|gb|AAT50047.1| PA5127 [synthetic construct]
          Length = 154

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R   L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPYL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ +     +    ++   +   +       A + G E +GL    +          
Sbjct: 64  QSCLEALGQP--RLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDRRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  AV +Y       
Sbjct: 122 LPMREGCRSLNLSNTVAVTVYEAWRQLG 149


>gi|15600320|ref|NP_253814.1| rRNA methylase [Pseudomonas aeruginosa PAO1]
 gi|9951426|gb|AAG08512.1|AE004926_2 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
          Length = 153

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R   L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRYPYL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ +     +    ++   +   +       A + G E +GL    +          
Sbjct: 64  QSCLEALGQP--RLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNALPTDRRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  AV +Y       
Sbjct: 122 LPMREGCRSLNLSNTVAVTVYEAWRQLG 149


>gi|222086611|ref|YP_002545145.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221724059|gb|ACM27215.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 153

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR A        I            L ++    L  +   R  N         
Sbjct: 14  PGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYLSAVALARHVNWERFETWRA 73

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + +  S+ + +        +   L+ G E  G+     ETA     + M    +++
Sbjct: 74  ATGRRLVLASTKAAERYTDFAFREDDILLFGRESAGVPDHVHETADGRILIPMLEGQRSI 133

Query: 264 NVSNAAAVA 272
           N++ + A+ 
Sbjct: 134 NLAMSVAMI 142


>gi|90414908|ref|ZP_01222872.1| putative rRNA methylase, SpoU family protein [Photobacterium
           profundum 3TCK]
 gi|90323964|gb|EAS40560.1| putative rRNA methylase, SpoU family protein [Photobacterium
           profundum 3TCK]
          Length = 154

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 8/140 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       +  +        E   L ++    L++     +    D        
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKLRRA---GLDYHDLAHVHRHKDF-AAFKEA 69

Query: 206 --GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
             G +    ++ +          +   LI G E +GL  +  E+        + M    +
Sbjct: 70  MVGRRLFACTTKTTNYHTNAQFAEGDVLIFGPETRGLPAEFIESLPLEQRLRIPMHPDSR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNAAA+  Y       
Sbjct: 130 SLNLSNAAAIIGYEAWRQLG 149


>gi|330874202|gb|EGH08351.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967517|gb|EGH67777.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 151

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+      ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ASCLEKIGNP--RLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPADILDSLSSDQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|319764160|ref|YP_004128097.1| tRNA/rRNA methyltransferase (spou) [Alicycliphilus denitrificans
           BC]
 gi|330826483|ref|YP_004389786.1| tRNA/rRNA methyltransferase SpoU [Alicycliphilus denitrificans
           K601]
 gi|317118721|gb|ADV01210.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           BC]
 gi|329311855|gb|AEB86270.1| tRNA/rRNA methyltransferase (SpoU) [Alicycliphilus denitrificans
           K601]
          Length = 158

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  ++ ++     E+    R S  
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCMLHLVEPLGFSMEDRLMRRAGLDYHEYAEVRRHSGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
           T  L+ M     +   L++   + +          ++ GAE +GL P+ +ET   A    
Sbjct: 64  TALLRDMRPDPSRMFALTTHGTRSVYDAGFLPGDWMVFGAESRGLPPELRETFPPA-QRL 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV +Y     
Sbjct: 123 RLPMLPGQRSLNLSNAVAVTVYEAWRQ 149


>gi|167622262|ref|YP_001672556.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167352284|gb|ABZ74897.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           halifaxensis HAW-EB4]
          Length = 153

 Score = 68.1 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +        N    L+ M   
Sbjct: 14  NTGNIIRLIANNGCKLHLIEPLGFDLEDKKLRRAGLDYADLANVTHHKNFEAFLEAMDGK 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
             + +  ++   +P  +        L+ G E +GL     ++        + M    ++L
Sbjct: 74  --RIMACTTKGSRPHSELTFKQDDVLLFGPESRGLPADIIDSIPTEQRLRIPMMSTSRSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  Y      
Sbjct: 132 NLSNAVAIISYEAWRQL 148


>gi|326381925|ref|ZP_08203618.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199351|gb|EGD56532.1| tRNA/rRNA methyltransferase SpoU [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 154

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A    C+  +          A + ++     E        +L  A +K+ 
Sbjct: 12  PPNTGNAIRIAANTGCELHLIEPLGFTMTDAQVRRAGLDYHEMANVTVHPDLATAWEKL- 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    ++ + +            L+ G E  GL  +       T    + M    +
Sbjct: 71  -APTRVFAFTAHATRFYTDVSYEPGDVLLFGPEPTGLPDEVLADPHVTDQLRIPMLEGRR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           ++N++NA +VALY     
Sbjct: 130 SMNLANATSVALYEAWRQ 147


>gi|306827948|ref|ZP_07461215.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
 gi|304429867|gb|EFM32909.1| RNA methyltransferase [Streptococcus pyogenes ATCC 10782]
          Length = 194

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 23  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 82

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK- 243
           +      +L   + + H          +++ S+        +     + G E  GL    
Sbjct: 83  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYADGDSHY---FLFGREDTGLPEDF 139

Query: 244 TQETATSMAHLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            +E A     + M    +++LNVSN   V +  Y     
Sbjct: 140 MREHAEKALRIPMNDEHVRSLNVSNT--VCMVVYEALRQ 176


>gi|94989816|ref|YP_597916.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
 gi|94543324|gb|ABF33372.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
          Length = 194

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 23  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 82

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK- 243
           +      +L   + + H          +++ S+        +     + G E  GL    
Sbjct: 83  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYADGDSHY---FLFGREDTGLPEDF 139

Query: 244 TQETATSMAHLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            +E A     + M    +++LNVSN   V +  Y     
Sbjct: 140 MREHAEKALRIPMNDEHVRSLNVSNT--VCMVIYEALRQ 176


>gi|50913684|ref|YP_059656.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|71902967|ref|YP_279770.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94987942|ref|YP_596043.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94991826|ref|YP_599925.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94993702|ref|YP_601800.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
 gi|50902758|gb|AAT86473.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
 gi|71802062|gb|AAX71415.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
 gi|94541450|gb|ABF31499.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
 gi|94545334|gb|ABF35381.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
 gi|94547210|gb|ABF37256.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
          Length = 194

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 23  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 82

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK- 243
           +      +L   + + H          +++ S+        +     + G E  GL    
Sbjct: 83  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYADGDSHY---FLFGREDTGLPEDF 139

Query: 244 TQETATSMAHLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            +E A     + M    +++LNVSN   V +  Y     
Sbjct: 140 MREHAEKALRIPMNDEHVRSLNVSNT--VCMVIYEALRQ 176


>gi|15674520|ref|NP_268694.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71910126|ref|YP_281676.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|139474353|ref|YP_001129069.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|209558867|ref|YP_002285339.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
 gi|313471792|sp|Q48V41|TRML_STRPM RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase M28_Spy0301
 gi|13621623|gb|AAK33415.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
 gi|71852908|gb|AAZ50931.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
 gi|134272600|emb|CAM30867.1| SpoU rRNA methylase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|209540068|gb|ACI60644.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
          Length = 182

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 11  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 70

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK- 243
           +      +L   + + H          +++ S+        +     + G E  GL    
Sbjct: 71  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYADGDSHY---FLFGREDTGLPEDF 127

Query: 244 TQETATSMAHLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            +E A     + M    +++LNVSN   V +  Y     
Sbjct: 128 MREHAEKALRIPMNDEHVRSLNVSNT--VCMVIYEALRQ 164


>gi|21909807|ref|NP_664075.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28896500|ref|NP_802850.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|21903993|gb|AAM78878.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28811754|dbj|BAC64683.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
          Length = 182

 Score = 67.8 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D V+ ++  +VL     P N G I R+  A +    I      P +   + ++     + 
Sbjct: 11  DKVKKARNHIVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDK 70

Query: 187 IPYIRISNLTDALQKMHSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK- 243
           +      +L   + + H          +++ S+        +     + G E  GL    
Sbjct: 71  LELHFYDHLEQFINQCHGQLHLISKFAVNNYSQATYADGDSHY---FLFGREDTGLPEDF 127

Query: 244 TQETATSMAHLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            +E A     + M    +++LNVSN   V +  Y     
Sbjct: 128 MREHAEKALRIPMNDEHVRSLNVSNT--VCMVIYEALRQ 164


>gi|152980476|ref|YP_001354860.1| RNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151280553|gb|ABR88963.1| RNA methyltransferase, TrmH family, group 2 [Janthinobacterium sp.
           Marseille]
          Length = 165

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 14/157 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P + A + ++     ++      ++ 
Sbjct: 9   VVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVHADW 68

Query: 196 TDALQKM-------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              L          H   F    L++    P            + G+E KGL    +E+ 
Sbjct: 69  QAFLNSFPAEQPLNHERMF---ALTTHGSTPFASMAFQPGDVFVFGSETKGLETSLRESF 125

Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             +    L M    ++LN+SN  AV +Y    QN+FA
Sbjct: 126 PPSQRIRLPMRPDNRSLNLSNTVAVVVYEAWRQNNFA 162


>gi|73662249|ref|YP_301030.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|72494764|dbj|BAE18085.1| putative rRNA methylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 156

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G+I R+         +       ++  +L ++     E +      N+
Sbjct: 5   IVLFQPQIPGNTGSIARTCAGTYTHLHLIKPLGFSTDDKMLKRAGLDYWESVNITYYENI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQET-ATSM 251
               +   +       L+   KK        D       I G E  GL    ++  A + 
Sbjct: 65  ESFFE---NTDGTYYLLTKFGKKTYSDFDFTDTEHDHFFIFGRETTGLPDWVKDAYAETA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN A++ +Y     
Sbjct: 122 LRIPMNDNIRSLNLSNTASLLIYEALRQ 149


>gi|237802221|ref|ZP_04590682.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331025078|gb|EGI05134.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 151

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+      ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ATCLEKIGNP--RLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSSDQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|146280742|ref|YP_001170895.1| RNA methyltransferase [Pseudomonas stutzeri A1501]
 gi|21425310|emb|CAC79245.1| putative RNA methylase [Pseudomonas stutzeri]
 gi|145568947|gb|ABP78053.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas stutzeri
           A1501]
 gi|327479010|gb|AEA82320.1| RNA methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 160

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 7/151 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G I+R      C   +        +   L ++     E+    R ++L
Sbjct: 4   VILFQPEIPPNTGNIIRLCANTGCHLHLIEPLGYELDDKRLRRAGLDYHEYATLERHADL 63

Query: 196 TDALQKMHSW-----GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-- 248
              L ++        G +    ++   +P  +       AL+ G E +GL P  ++    
Sbjct: 64  PSCLARIGIDAANPDGPRLFAFTTKGSQPFHEVRYRRGDALLFGPESRGLPPDIRDALPN 123

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                L M    ++LN+SN  A+A+Y     
Sbjct: 124 EQRLRLPMRPDSRSLNLSNTVAIAVYEAWRQ 154


>gi|297621748|ref|YP_003709885.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
 gi|297377049|gb|ADI38879.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
          Length = 154

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+      D  +            L ++     E +    + NL
Sbjct: 4   VVLYQPQIPQNTGNIVRTCSVTGSDLYLVAPLGFQITDRWLKRAGLDYWEGVNMQVLENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + L+   +        SS +K+P  +        L+ G+E  GL     E        L
Sbjct: 64  EEVLESQQT---PFYFFSSHAKRPYSKISFTTDDWLVFGSETHGLPKTFVEKWPEKFISL 120

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M    + LN++ +  +A+Y    QN F 
Sbjct: 121 PMIEGKRCLNLATSVGIAVYEAYRQNQFN 149


>gi|113970074|ref|YP_733867.1| RNA methyltransferase [Shewanella sp. MR-4]
 gi|113884758|gb|ABI38810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella sp. MR-4]
          Length = 241

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 22/163 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PSESAVLAKSASGALEHIPYIRIS 193
           ++L   + P NIG+  R+        +   +       +S  LA  AS  L+H+  +++ 
Sbjct: 7   VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHL--VKVD 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEGKGL 240
           +L +A+          I  S+ S+      +              +  +A++ G E  GL
Sbjct: 65  SLEEAIADCS----LVIATSARSRTLDWPMLDPREAGQKLVTEGLSGPVAIVFGRENHGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
             +  +  T    +       +LN++ A  +  Y T+  H A+
Sbjct: 121 TNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQ 163


>gi|296328651|ref|ZP_06871168.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154250|gb|EFG95051.1| TrmH family RNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 150

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTTFHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L+   + G +    ++ +K+        +   ++ G E +G+         E   ++
Sbjct: 63  EEFLEA--NKGIRLFYATTKTKQRYSDVKYEENDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G   +LN+SN+A + LY       
Sbjct: 121 PMIPM-GR--SLNLSNSAVIILYEAYRQLG 147


>gi|163859022|ref|YP_001633320.1| rRNA methylase [Bordetella petrii DSM 12804]
 gi|163262750|emb|CAP45053.1| rRNA methylase [Bordetella petrii]
          Length = 156

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V   +  P N G  +R          +        + A L ++     E  P    
Sbjct: 3   HVVLVCPEI--PPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L  AL    +       L++ +++ + +         + G E  GL  +         
Sbjct: 61  DTLEQALAATGAPPAHIYALTTRAQRNVAEVAFGPDDVFVFGRETAGLSDEHMALFAPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 CLRLPMRAGQRSLNLSNAVAVTVFEAWRQ 149


>gi|306824229|ref|ZP_07457599.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309801726|ref|ZP_07695846.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552432|gb|EFM40349.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308221668|gb|EFO77960.1| RNA methyltransferase, TrmH family [Bifidobacterium dentium
           JCVIHMP022]
          Length = 320

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +++ L   +  + +   + I L       P+E      +  ++ GAEG GL  K  E 
Sbjct: 225 LAQLAELESKIADLQAA--RIIALDIIPGAVPMETYHFPKRCLMLFGAEGPGLSEKALEL 282

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           A  + ++   G ++++N   AAAV+++     H
Sbjct: 283 ADDVVYISQFGSVRSINAGAAAAVSMHAWIAQH 315



 Score = 36.2 bits (83), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA    +  + +++     NIG+++R+A AF    +     +    +        
Sbjct: 74  IKADLDAHGRHEFEVAVENWTHDFNIGSMVRTANAFQASRVHIVGPH--KWNRK------ 125

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           GAL    Y  + N     + +  W ++  G
Sbjct: 126 GALMTELYQHVENHPSIAELVECWKYRISG 155


>gi|325293605|ref|YP_004279469.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325061458|gb|ADY65149.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 157

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR A        I            L ++    +      R  +     +   
Sbjct: 18  PGNTGTILRLAACLGLGVDIIEPAGFDISDRNLKRAGMDYIAAAALTRHVSWDRFEEWRA 77

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + +  S+ +  P  +        L+ G E  G+     E A     + M    +++
Sbjct: 78  TTGRRLVLASTKAALPYTKIAYRHDDILLFGRESAGVPDHVHEKAQERIIIPMVEGQRSI 137

Query: 264 NVSNAAAVA 272
           NV+ +AA+ 
Sbjct: 138 NVAMSAAMI 146


>gi|302333521|gb|ADL23714.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 156

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     E +      ++
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQET-ATSM 251
               +  +   +    L+   KK          +     I G E  GL    +E    + 
Sbjct: 65  EAFFETTNGEYYL---LTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSEHIRSLNLSNTAALLIYEALRQ 149


>gi|296120116|ref|ZP_06838670.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967270|gb|EFG80541.1| SpoU rRNA methylase family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 155

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +V D+   P N G  +R+A        +        +   L ++     +       
Sbjct: 2   PLHIVFDNPVIPTNTGNAIRTAAVTGAKLHLVEPLGFNFDDKHLKRAGLDYHDLADLKIH 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            +    +  +   G +    ++++          D   L+ G E  GL  +       T 
Sbjct: 62  PDFDACMDAL--PGARVFAFTTNATDWFTDVEYTDGDVLLFGTEPTGLPAEHLAHPRITQ 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNAA+ A+Y       
Sbjct: 120 EVRIPMVPARRSMNLSNAASTAVYEAWRQLG 150


>gi|261349415|ref|ZP_05974832.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
           smithii DSM 2374]
 gi|288861777|gb|EFC94075.1| RNA methyltransferase, TrmH family, group 1 [Methanobrevibacter
           smithii DSM 2374]
          Length = 301

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 19/180 (10%)

Query: 112 QGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           +G+ +   P      +     + + +V      P NIG + R+   F    ++      P
Sbjct: 47  RGIKIAKGPEDDAEKELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVL--INPP 104

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL---------- 220
           + +      A+     +   +I +  D   +     F+                      
Sbjct: 105 TLTPEAFYQATHGKYIVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPEN 164

Query: 221 --EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYIT 276
             +    N+K A++ G EG GL  +  E       +       I  LN+S+AAA+  Y  
Sbjct: 165 LGKNINTNNKTAILFGREGNGLTNEEIEDCDICVSIPTDPTYPI--LNISHAAAIIFYEL 222


>gi|222446047|ref|ZP_03608562.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435612|gb|EEE42777.1| hypothetical protein METSMIALI_01696 [Methanobrevibacter smithii
           DSM 2375]
          Length = 272

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 19/180 (10%)

Query: 112 QGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
           +G+ +   P      +     + + +V      P NIG + R+   F    ++      P
Sbjct: 18  RGIKIAKGPEDDAEKELSNFKNNIYIVFVECETPGNIGFLARTMANFGLKNLVL--INPP 75

Query: 171 SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL---------- 220
           + +      A+     +   +I +  D   +     F+                      
Sbjct: 76  TLTPEAFYQATHGKYIVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPEN 135

Query: 221 --EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYIT 276
             +    N+K A++ G EG GL  +  E       +       I  LN+S+AAA+  Y  
Sbjct: 136 LGKNINTNNKTAILFGREGNGLTNEEIEDCDICVSIPTDPTYPI--LNISHAAAIIFYEL 193


>gi|298529619|ref|ZP_07017022.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511055|gb|EFI34958.1| tRNA/rRNA methyltransferase (SpoU) [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 252

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 19/163 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR-YSPSESAVLAKSASGALEHIPYI 190
           + + ++L       N+G++ R+ +   C  +I         + A    ++ GA       
Sbjct: 2   NNIAVILCRPKYSENVGSVARACINMGCSRLIIAGSQTFDPQRAAPLATSRGAELLRSTE 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAE 236
              NL  AL+  H    +    S+               +++ +  E  +   AL+ G E
Sbjct: 62  HYPNLEQALKGFH----RVFATSARVGGWRKGVFLPWQAAQEIMRPETLDQDTALVFGPE 117

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            KGL     E    +  +       +LN+S A  + LY    H
Sbjct: 118 DKGLANHEIELCPRIISIPTTSQAWSLNLSQAVLLVLYECFKH 160


>gi|134096081|ref|YP_001101156.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133739984|emb|CAL63035.1| Putative RNA methyltransferase [Herminiimonas arsenicoxydans]
          Length = 160

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P + A + ++     ++       + 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHDYAQMKVHHDW 63

Query: 196 TDALQKMHS----WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--T 249
              L    +       +   L++    P            + G+E KGL P  +E+    
Sbjct: 64  QAFLDSFPADQPLNPARMFALTTHGSTPFAGLAFQPGDIFVFGSETKGLAPALRESFPPV 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SN  AV +Y     
Sbjct: 124 QRIRLPMRPDNRSLNLSNTVAVVVYEAWRQ 153


>gi|304317839|ref|YP_003852984.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779341|gb|ADL69900.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 156

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +            L +S      ++      N+
Sbjct: 5   VVLVEPEIPQNTGNIARTCVLTGSKLHLVKPLGFSLSEKYLKRSGLDYWPYLDLKVYENI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + L+      +     ++  K    +    D   ++ G E  GL    +E        +
Sbjct: 65  EEFLESTKGSKY--YLATTKGKHFYHEVKYEDDSYILFGKESAGLPQWLREMYEDDCIRI 122

Query: 255 HMPG-IIK-ALNVSNAAAVALYITQNHFA 281
            M     + +LN+SN+ A+ +Y       
Sbjct: 123 PMNEVKAERSLNLSNSVAILVYEALKQLG 151


>gi|294341204|emb|CAZ89605.1| putative RNA methyltransferase TrmH, group 2 [Thiomonas sp. 3As]
          Length = 156

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R      C   +        +   L ++     E+      S+ 
Sbjct: 4   IVLVEPEIPPNTGNVIRLCANTGCTLHLVEPLGFSLDDKQLRRAGLDYHEYATLQTHSSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +Q +     +    ++   + +           + GAE +GL    +E    T    
Sbjct: 64  DALMQTLQPRPERLFAFTTRGSRLIGSVRFEPGDCFVFGAETRGLSDAVREQFAPTQRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN+ AVA++     
Sbjct: 124 LPMREGQRSLNLSNSVAVAVFEAWRQ 149


>gi|149908629|ref|ZP_01897291.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
 gi|149808463|gb|EDM68400.1| putative tRNA/rRNA methyltransferase [Moritella sp. PE36]
          Length = 154

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        +   + ++     E     R +N    L  + 
Sbjct: 12  PPNTGNIIRLCANSGFKLHLIEPLGFEWDDKRVKRAGLDYHEFADVKRHANYQAFLDCVG 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
               +    ++   K   +        L+ G E +GL P+  +T        + M    +
Sbjct: 72  DA--RIFACTTKGTKYHHEAQYQAGDVLLFGPETRGLPPEVLDTLPQEQKVRIPMLPESR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++N+SNA +V +Y +     
Sbjct: 130 SMNLSNAVSVFIYESWRQLG 149


>gi|116620037|ref|YP_822193.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223199|gb|ABJ81908.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 252

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 23/175 (13%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P L   ++A   + L +VL    +P NIGA  R+   F    +     Y  +     A+S
Sbjct: 6   PALPLNINANWKNNLRVVLVSTRNPLNIGAAARAMANFGFSRLGVVAPYDVAFRE--ARS 63

Query: 180 ASGALEHIPYIR-ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------ 226
           A GA   +       ++  A+          +G +S   + L+  I+             
Sbjct: 64  AVGAAPLLQKAEEFPSVAAAVADCR----LVVGTTSVGHRELQHPIRRLEYGARLMLKGL 119

Query: 227 --DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK-ALNVSNAAAVALYITQN 278
               +AL+ G+E  GL  +       +  +   G    ++N+  A A+ LY    
Sbjct: 120 PAAPVALLFGSEKFGLSNEDLSHCHWLMRIPTVGQ-DLSMNLGQAVALCLYELAR 173


>gi|254456524|ref|ZP_05069953.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083526|gb|EDZ60952.1| rRNA Methylase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 157

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 42/136 (30%), Gaps = 2/136 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N  AI+R+         I              +     ++        +     +   
Sbjct: 20  PQNTAAIIRTCACLGAKLEIIEPCGFHLSDKRFKRVVMDYMDWDKINIYQSSDKFFKAKK 79

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +   + + +++ +     +        ++ G E  G+     +       + M    ++L
Sbjct: 80  NQ--RIVLMTTKASVSYTEFKFEKNDTILFGRESSGVPESVHQLINDRLKIPMSEDTRSL 137

Query: 264 NVSNAAAVALYITQNH 279
           N++++ A+ L  +   
Sbjct: 138 NIASSVAIILAESLRQ 153


>gi|227545717|ref|ZP_03975766.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|317482756|ref|ZP_07941768.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688400|ref|YP_004208134.1| hypothetical protein BLIF_0209 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|227213833|gb|EEI81672.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|316915791|gb|EFV37201.1| SpoU rRNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320459736|dbj|BAJ70356.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 282

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 49/190 (25%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF    +     +  +    L     
Sbjct: 74  IKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHIVGPHKWNRKGALMTELY 133

Query: 182 GALEHIP----------------------------------------------YIRISNL 195
             +EH P                                                 I   
Sbjct: 134 QHVEHHPSIAELVESWHHRIAGEIAYERAKAGAAAVHAHDVAVDGDNKHLHELLAEIDAC 193

Query: 196 TDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              ++++ +   + I L       P+E      +  L+ GAEG GL  K    A  + ++
Sbjct: 194 DARIKELQAA--RVIALDIIPGAVPMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYI 251

Query: 255 HMPGIIKALN 264
              G ++++N
Sbjct: 252 SQFGSVRSIN 261


>gi|261341783|ref|ZP_05969641.1| hypothetical protein ENTCAN_08264 [Enterobacter cancerogenus ATCC
           35316]
 gi|288316153|gb|EFC55091.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 159

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E    +R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVVRHPDY 63

Query: 196 TDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L          +   G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFLDAEKPQRMFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPATILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|319956345|ref|YP_004167608.1| tRNA/rRNA methyltransferase (spou) [Nitratifractor salsuginis DSM
           16511]
 gi|319418749|gb|ADV45859.1| tRNA/rRNA methyltransferase (SpoU) [Nitratifractor salsuginis DSM
           16511]
          Length = 157

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 2/147 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R  V       +            + ++     + +      ++
Sbjct: 4   IVLVHPKIPPNTGNIARLCVNLGAKLHLIEPLGFDISEKAVRRAGLDYWKDLDLTVWESI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
              L +    G   +  +  +++   +   +    LI G+E +GL  +  +        +
Sbjct: 64  EAFLAEHPIDGHCHLATT-KTERLYWEAEYHPGDWLIFGSETEGLPAELLQSRPDRCITI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M    +++N+S A  +  Y      A
Sbjct: 123 PMSPAGRSINLSVAVGIVAYEALRQSA 149


>gi|254441248|ref|ZP_05054741.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
 gi|198251326|gb|EDY75641.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
          Length = 157

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 4/151 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           + ++ +VL     P+N GAI R+ VA   + I+        +   + ++     +H+   
Sbjct: 3   DPRMKLVLVTPEIPYNTGAIGRTCVALELELILIKPYGFSLDEKAVRRAGQDYWKHVQLC 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                   +   +              + +          L+ G E KGL          
Sbjct: 63  EYDTWQGFMDDRNPPRDSLYFFEEHGAQSVYAPDYQHDAYLVFGCESKGLPATVLNGMDD 122

Query: 251 MA-HLHMPGI-IKALNVS-NAAAVALYITQN 278
              HL M    +++LN++  A AV  Y    
Sbjct: 123 RVFHLPMRNPLVRSLNLANVATAVI-YQAMR 152


>gi|71277929|ref|YP_271035.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71143669|gb|AAZ24142.1| RNA methyltransferase, TrmH family, group 2 [Colwellia
           psychrerythraea 34H]
          Length = 154

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     R +N 
Sbjct: 4   VVLFQPQIPPNTGNIIRLCANSGFRLHLIEPLGFDLDDKKLRRAGLDYHEFAAIQRHANF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSM-AH 253
              L+       + + +++ +              L+ G+E  GL  + +          
Sbjct: 64  NAFLE--KEQPKRVLAITTKTNNFYGDISFAAGDYLLFGSETAGLPEEVRAQIPDENKLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA AV +Y       
Sbjct: 122 IPMLKESRSMNLSNATAVIVYDAWRQLG 149


>gi|319787464|ref|YP_004146939.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465976|gb|ADV27708.1| RNA methyltransferase, TrmH family, group 1 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 267

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 59/171 (34%), Gaps = 15/171 (8%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVL 176
           +P+            + +VL     P NIGA  R+        ++     SP        
Sbjct: 4   SPIQPQHAAGPGPGDIRIVLVGTQHPGNIGAAARAMKTMGLSRLVL---VSPEKPLDDTA 60

Query: 177 AKSASGALEHIPYIRI-SNLTDALQKMH--------SWGFQTIGLSSDSKKPLE-QEIKN 226
            + ++GA + +    + + L +A+            S   Q   L  D+      Q    
Sbjct: 61  YRRSAGAEDVLDSAPVYATLAEAVADCRMVLGCTARSRRVQLEQLEPDAAAQRALQATAE 120

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +AL+ G E  GL  +  +   +  H+       +LN++ A  V  Y  +
Sbjct: 121 GPVALVFGRERTGLTNEELQLCHASVHIPSDPAFSSLNLAAAVQVLAYELR 171


>gi|94501460|ref|ZP_01307979.1| putative RNA-methyltransferase [Oceanobacter sp. RED65]
 gi|94426425|gb|EAT11414.1| putative RNA-methyltransferase [Oceanobacter sp. RED65]
          Length = 154

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 4/129 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     E        +     + M   
Sbjct: 14  NTGNIIRLCANNGCQLHLIEPMGFNLEEKKLRRAGLDYHEFANVSVYPDYWAFKEAMKDK 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKAL 263
             +    ++       +        L+ GAE  GL  +  E+        + M    ++L
Sbjct: 74  --RIFACTTKGSGHYHKVKYQPDDVLLFGAETHGLSDEVMESIDPSMRIRIPMLPDSRSL 131

Query: 264 NVSNAAAVA 272
           N+SN+ A+ 
Sbjct: 132 NLSNSVAII 140


>gi|126726856|ref|ZP_01742695.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
 gi|126703814|gb|EBA02908.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
          Length = 157

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 6/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N ++++V   +  P N GAI R+ VA   + I+        +   + ++ +   +H+  
Sbjct: 4   PNMKIVLVTPEI--PWNTGAIGRTCVALGLELILIKPLGFSLDEKAVRRAGTDYWKHVDL 61

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TA 248
               +    L   +              + + +   +    LI G E  GL     +   
Sbjct: 62  TLYDDWQSFLDAHNPAPESMYFFEEHGAQTIYEPEYDPNGYLIFGCESAGLPRAVLDGRD 121

Query: 249 TSMAHLHMPGI-IKALNVS-NAAAVALYITQN 278
             +  L M    +++LN++  A AV  Y    
Sbjct: 122 DQVFKLPMLSPLVRSLNLANVATAVV-YQAMR 152


>gi|322492223|emb|CBZ27497.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 517

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 51/197 (25%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYIRIS 193
           +VL  +  P N+GA+LR+A     D  +     +      + +++ G      +      
Sbjct: 285 LVLVGLRIPSNVGALLRAAADMGYDAAVLVN-CADPTQEKVLRASDGTALSPTLRIYETE 343

Query: 194 NLTDALQKMH--------------------------SWGFQTI---------------GL 212
               A   +                           +  F                  G 
Sbjct: 344 TTEQACVSLLSSIAAQHRLMPFLAVPSQEVEPAFEVAKRFHVYNAKNKEAATSQVSGGGA 403

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPG-IIKALNVSNAA 269
           +  S        K     +ILG+E +GLR           +  L +P  ++ + NVS A 
Sbjct: 404 AGHSDALCTPPPKQLGAMVILGSEAQGLRDLNGRWGVPYQLVTLPLPNPMVDSFNVSVAG 463

Query: 270 AVALYITQ----NHFAK 282
           +V +++ +    +HF +
Sbjct: 464 SVLMHLFRPSAASHFTR 480


>gi|320528359|ref|ZP_08029521.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei
           F0204]
 gi|320131273|gb|EFW23841.1| RNA methyltransferase, TrmH family, group 2 [Solobacterium moorei
           F0204]
          Length = 171

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ +A +C   +            L ++    ++ + Y    + 
Sbjct: 4   VVLYEPEIPQNTGNIMRTCMAMNCRLHLIEPMGFKITDKSLKRAGMDYVKELDYKIYPDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAH 253
                      +        +      +E +   I L+ G E  G+      +       
Sbjct: 64  QTFYNMHEGSYYYITRYGEKTPSEFNYKEDEGKDIYLVFGKESTGIDKHILHDNYDRCVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    ++LN+SN  A+ +Y   +   
Sbjct: 124 IPMVAQARSLNLSNCVAICVYEVLDQLG 151


>gi|255327010|ref|ZP_05368086.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
           ATCC 25296]
 gi|255296227|gb|EET75568.1| RNA methyltransferase, TrmH family, group 2 [Rothia mucilaginosa
           ATCC 25296]
          Length = 155

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +        + A L ++     +         L DA + + 
Sbjct: 12  PGNTGNAIRLAAITGAELHLVKPLGFNFDDAHLRRAGLDYHDLAVVTVHETLEDAWEALA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    ++ +               + G E  GL  + Q+    T    + M    +
Sbjct: 72  PE--RVFAFTTTASTSYADIEYRPGDVFMFGPESVGLPAEVQQDPHVTERVKIPMKPGRR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++N+A++A++     
Sbjct: 130 SLNLANSASIAIFEAWRQ 147


>gi|218778250|ref|YP_002429568.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759634|gb|ACL02100.1| RNA methyltransferase, TrmH family, group 1 [Desulfatibacillum
           alkenivorans AK-01]
          Length = 251

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 18/158 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YI 190
            ++ +VL     P NIG   R+      + +I  K  S ++  +   + +GA   I    
Sbjct: 8   KKIAIVLCEPQIPENIGGTARAMANMGLERLIVVKPKSLAQEKIYPMATAGARHLIDSME 67

Query: 191 RISNLTDALQKMHSWGFQTIGLSS------------DSKKPLEQEIKNDKIALILGAEGK 238
            + +L  AL++ +      +G ++            +    L      +++AL+ G E +
Sbjct: 68  VVDDLKTALKEFN----WVVGTTARLGSHRKAMTVENMAAKLISMTGENRVALVFGREDR 123

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL  +       + ++   G   +LN++ A  +  Y  
Sbjct: 124 GLSTEDVRLCHQLVNIRTAG-FSSLNLAQAVLLVCYEL 160


>gi|145350134|ref|XP_001419472.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579704|gb|ABO97765.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 183

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 8/165 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            T    +   L +VL     P N G I R+  A      +        + A L ++    
Sbjct: 11  ETASDAQRKDLHVVLVTPKIPGNTGCIARTCAASRVPLHLVAPLGFSLDDAQLKRAGLDY 70

Query: 184 LEHIPYIRISNLTDALQKMHSWG---FQTIGLSSDSKKPLEQEIKNDKI-ALILGAEGKG 239
            + +      +           G    + +  S    +P  ++        L+ GAE  G
Sbjct: 71  WKSVCVKVHDDWDAFYAYWRELGDERGRLVAFSKFGARPHAEDGAYRPGDWLLFGAETTG 130

Query: 240 LRPKTQETATSM--AH-LHMP-GIIKALNVSNAAAVALYITQNHF 280
           L     E   +      + +    +++LN+S +  + +Y      
Sbjct: 131 LPDAAMEACKATGGVRRIPIDESHVRSLNLSVSCGIGVYEALRQL 175


>gi|71664714|ref|XP_819335.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884631|gb|EAN97484.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 383

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 92/288 (31%), Gaps = 40/288 (13%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGV-HTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           R         ++SRH  +     ++G    +     +   +   +           W   
Sbjct: 60  RQLWNSTKLLRESRHMRRSFGACVFGGASAIQHVWRDYRIQPHVVYVPNTEPTVPAWCLE 119

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMVLDH 140
              P  V    P  I+K +       G A E     + +L+    +        ++VL  
Sbjct: 120 DELPTCVVCCSPVDINKSLLSAERGDGYAAEFPTPKTHSLETFLGAHKPSRLGSVLVLVG 179

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +  P N+G ++R+AV    + ++            + +++ G +             ++ 
Sbjct: 180 LRIPSNVGVLIRAAVDMGFESVLL-DDCVDIFHEKVLRASGGRVFSPNIKIFETHGASIP 238

Query: 201 -----KMHSWGFQTIGLSSDSKKPLEQEIKN-----------------------DKIALI 232
                 + +     + L S   +P  Q  +                          + L+
Sbjct: 239 LLSSIALENQLLPLLALPSREAEPAFQVARRLHESNAARRRNRDPDAGSTDDHLGPM-LV 297

Query: 233 LGAEGKGLRPKTQETAT--SMAHLHMPGI-IKALNVSNAAAVALYITQ 277
           LG+E KGLR    E         + +P   I ++NVS A +V L+  +
Sbjct: 298 LGSESKGLRGLEGEWTVPYRAVSIPLPNSFIDSINVSVAGSVLLHAFR 345


>gi|322411182|gb|EFY02090.1| tRNA (cytosine34-2'-O-)-methyltransferase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 181

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + +        I   +D     E    +     + G E  GL     +E       +
Sbjct: 79  EDFITQCQGK-LHLISKFADKVYSEETYADDQPHYFLFGREDTGLPEAFMREHTEKALRI 137

Query: 255 HMP-GIIKALNVSNAAAVAL--YITQNH 279
            M    +++LNVSN   V +  Y     
Sbjct: 138 PMNDDHVRSLNVSNT--VCMIVYEALRQ 163


>gi|242243076|ref|ZP_04797521.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|242233424|gb|EES35736.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 156

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       +E  +L ++     EH+      ++
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITYHDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +         +        +         N+    I G E  GL    +E  A +   +
Sbjct: 65  EEFFANTEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTGLPDWVKEKYAKTALRI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+SN AA+ +Y     
Sbjct: 125 PMSDNIRSLNLSNTAALLIYEALRQ 149


>gi|315498163|ref|YP_004086967.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
           48]
 gi|315416175|gb|ADU12816.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
           48]
          Length = 159

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+ LR          +      P     + ++A          R  +    L +  
Sbjct: 11  PQNLGSALRLCACLDVALDVIEPCGFPLSDRAIRRAAMDYGGQADVTRHDSWAAFLNRRD 70

Query: 204 SW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
            W    + +  ++   +P +         L++G E  G+       A +   + M   ++
Sbjct: 71  DWPQDTRIVLFTTKGAEPYQNFQFGPHDILLMGRESAGVPDDVHNAAEARLLIPMRPGMR 130

Query: 262 ALNVSNAAAVALYITQNH 279
           ++NV NAAA+AL      
Sbjct: 131 SINVINAAAMALGEALRQ 148


>gi|304436490|ref|ZP_07396464.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370536|gb|EFM24187.1| RNA methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 165

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R       +  +       ++   L ++       +      + 
Sbjct: 3   IVLVEPEIPGNTGNIARLCAGTGMELHLVQPLGFSTDDKHLKRAGLDYWHLVRVHYHDSF 62

Query: 196 TDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS---M 251
               Q+ H   F      +  S   +  +I +    L+ G E  GL              
Sbjct: 63  AALHQQYHEHTFYFCSTKARHSYCDISYKIDDF---LVFGKESAGLPESLL--TDYEANT 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
             + M    ++LN+SNA AV  +    Q+ FA
Sbjct: 118 IRIPMREEARSLNLSNAVAVVAFEALRQHRFA 149


>gi|317063710|ref|ZP_07928195.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313689386|gb|EFS26221.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 158

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 3/152 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   +L +VL +   P+N G I RSAV  +    +        +   L ++       + 
Sbjct: 2   LGGKKLNIVLLYPEIPYNTGNIGRSAVLTNTTLHLIKPLCFSLDEKQLKRAGLDYWHLVD 61

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ET 247
                +  D +    +        ++ +K+            ++ G E +G+        
Sbjct: 62  LKVWESYEDFIN--GNPDAVIYYATTKTKQKYTDIKFGKNDFVMFGPESRGIPEDILNRN 119

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A     + M  + ++LN+SN+AA+ LY     
Sbjct: 120 ADHCITIPMIDMGRSLNLSNSAAIILYEALRQ 151


>gi|27468455|ref|NP_765092.1| putative rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|57867280|ref|YP_188960.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|282875762|ref|ZP_06284629.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis SK135]
 gi|293366167|ref|ZP_06612853.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316002|gb|AAO05136.1|AE016749_82 putative rRNA methylase [Staphylococcus epidermidis ATCC 12228]
 gi|57637938|gb|AAW54726.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis RP62A]
 gi|281294787|gb|EFA87314.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis SK135]
 gi|291319689|gb|EFE60049.1| RNA methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329724859|gb|EGG61362.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU144]
 gi|329734296|gb|EGG70611.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU045]
 gi|329737347|gb|EGG73601.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           epidermidis VCU028]
          Length = 156

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       +E  +L ++     EH+      ++
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITYHDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +         +        +         N+    I G E  GL    +E  A +   +
Sbjct: 65  EEFFANTEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTGLPEWVKEKYAKTALRI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+SN AA+ +Y     
Sbjct: 125 PMSDNIRSLNLSNTAALLIYEALRQ 149


>gi|87120919|ref|ZP_01076811.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121]
 gi|86163757|gb|EAQ65030.1| putative tRNA/rRNA methyltransferase [Marinomonas sp. MED121]
          Length = 157

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +        +   + ++     E     R  + 
Sbjct: 4   IVLYQPEIPPNTGNVIRLCANTGYKLHLIEPLGFDLDEKKVRRAGLDYHELARVKRHKDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              +      G +   L++   K   +        L+ G E +GL  +  E   A     
Sbjct: 64  QAFVDS-QEIG-KVYALTTKGSKVPSEAKFEANDVLVFGPETRGLPIEFIEALPAEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           L M    ++LN+SN  A+ +Y +    
Sbjct: 122 LPMQPNSRSLNLSNTVAIMVYESWRQL 148


>gi|257469466|ref|ZP_05633558.1| 23S rRNA methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 152

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 3/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P+N G I RSAV  +    +        +   L ++       +      +  D +    
Sbjct: 11  PYNTGNIGRSAVLTNTTLHLIKPLCFSLDEKQLKRAGLDYWHLVDLKVWESYEDFIN--G 68

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKA 262
           +        ++ +K+            ++ G E +G+        A     + M  + ++
Sbjct: 69  NPDAVIYYATTKTKQKYTDIKFGKNDFVMFGPESRGIPEDILNRNADHCITIPMIDMGRS 128

Query: 263 LNVSNAAAVALYITQNH 279
           LN+SN+AA+ LY     
Sbjct: 129 LNLSNSAAIILYEALRQ 145


>gi|255264534|ref|ZP_05343876.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
 gi|255106869|gb|EET49543.1| RNA methyltransferase, TrmH family [Thalassiobium sp. R2A62]
          Length = 157

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 4/151 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             +L MVL     P+N GAI RS VA   + I+        +   + ++ +   +H+   
Sbjct: 3   KPRLKMVLVTPEIPYNTGAIGRSCVALGLELILIKPYGFSLDEKSVRRAGTDYWKHVDLS 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T 249
              +  D L+       Q      D  +       +    L+ G E  GL     +    
Sbjct: 63  EYDSWADFLETRQPPRDQMYFFEEDGAQSFYAPEYHPDGYLVFGCESAGLPASVLDGMED 122

Query: 250 SMAHLHMPG-IIKALNVS-NAAAVALYITQN 278
            M HL M    +++LN++  A A A+Y    
Sbjct: 123 RMFHLPMLDTRVRSLNLANVATA-AIYQAMR 152


>gi|19704144|ref|NP_603706.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714356|gb|AAL95005.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 150

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L+   + G +    ++ +K+        +   ++ G E +G+         E   ++
Sbjct: 63  EEFLEA--NKGIRLFYATTKTKQRYSDVKYEENDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G   +LN+SN+A + LY       
Sbjct: 121 PMIPM-GR--SLNLSNSAVIILYEAYRQLG 147


>gi|323704896|ref|ZP_08116473.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535822|gb|EGB25596.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 156

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +            L +S      ++      NL
Sbjct: 5   VVLVEPEIPQNTGNIARTCVLTGSKLHLVKPLGFSLSEKYLKRSGLDYWPYLDLKVYENL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + L+      +     ++  K    +    D+  ++ G E  GL    +E        +
Sbjct: 65  EEFLESTKGCKY--YLATTKGKHFYHEVKYEDESYILFGKESAGLPQWLREKYEDDCIRI 122

Query: 255 HMPG-IIK-ALNVSNAAAVALYITQNHFA 281
            M     + +LN+SN+ A+ +Y       
Sbjct: 123 PMNEVKAERSLNLSNSVAIVVYEALKQLG 151


>gi|299068084|emb|CBJ39298.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           CMR15]
          Length = 156

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A + ++     E+      ++ 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA----TSM 251
              L+       +   L++    P            + G+E +GL  +    A    +  
Sbjct: 64  EAFLRDAQPNPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEE--RRAGFPPSQR 121

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             L M    ++LN+SN  AV ++    QN FA
Sbjct: 122 IRLPMRPNNRSLNLSNTVAVVVFEAWRQNGFA 153


>gi|23465003|ref|NP_695606.1| hypothetical protein BL0405 [Bifidobacterium longum NCC2705]
 gi|189440070|ref|YP_001955151.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|239622608|ref|ZP_04665639.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|312133408|ref|YP_004000747.1| spou3 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322690420|ref|YP_004219990.1| hypothetical protein BLLJ_0228 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325605|gb|AAN24242.1| narrowly conserved hypothetical protein with possible methylase
           domain [Bifidobacterium longum NCC2705]
 gi|189428505|gb|ACD98653.1| rRNA methylase [Bifidobacterium longum DJO10A]
 gi|239514605|gb|EEQ54472.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|311772635|gb|ADQ02123.1| SpoU3 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455276|dbj|BAJ65898.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 282

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 49/190 (25%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF    +     +  +    L     
Sbjct: 74  IKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHIVGPHKWNRKGALMTELY 133

Query: 182 GALEHIP----------------------------------------------YIRISNL 195
             +EH P                                                 I   
Sbjct: 134 QHVEHHPSIAELVESWHHRIAGEIAYERAKAGAAAIHAHDVAVDGDNKHLHELLAEIDAC 193

Query: 196 TDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              ++++ +   + I L       P+E      +  L+ GAEG GL  K    A  + ++
Sbjct: 194 DARIKELQAA--RVIALDIIPGAVPMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYI 251

Query: 255 HMPGIIKALN 264
              G ++++N
Sbjct: 252 SQFGSVRSIN 261


>gi|323965873|gb|EGB61321.1| RNA methyltransferase [Escherichia coli M863]
 gi|323975171|gb|EGB70276.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|327250731|gb|EGE62433.1| spoU rRNA Methylase family protein [Escherichia coli STEC_7v]
          Length = 157

 Score = 67.4 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  N 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHNY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|194363941|ref|YP_002026551.1| tRNA/rRNA methyltransferase SpoU [Stenotrophomonas maltophilia
           R551-3]
 gi|194346745|gb|ACF49868.1| tRNA/rRNA methyltransferase (SpoU) [Stenotrophomonas maltophilia
           R551-3]
          Length = 159

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            Q  ++L     P N G ++R          +        E   L ++     E+     
Sbjct: 5   PQFHVILFQPEIPPNTGNVIRLCANTGAQLHLVEPLGFALEDKQLKRAGLDYHEYSRLQV 64

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T- 249
             +L  AL ++     +   LS+ +    +    +D  A + G E +GL     +     
Sbjct: 65  HPDLDTALARIAPK--RLFALSTRASVRYDSVAFDDGDAFLFGPESRGLPQDVLDALPDG 122

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SN  AV +Y     
Sbjct: 123 HRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152


>gi|71082809|ref|YP_265528.1| rRNA methylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|91762768|ref|ZP_01264733.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002]
 gi|71061922|gb|AAZ20925.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|91718570|gb|EAS85220.1| rRNA Methylase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 153

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 4/141 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N  AI+R+      D  I              +     ++        +  +  +   
Sbjct: 15  PQNTAAIIRTCACLGADLEIIEPCGFLFSDKRFKRVVMDYMDEKMIRFYQSSDEFFKSKK 74

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +   + I L++ S              L+ G E  G+             + M    ++L
Sbjct: 75  NE--RVILLTTKSADSYTDFKFESNDTLLFGRESAGVPDHVHNLIKYRLKIPMMDNKRSL 132

Query: 264 NVSNAAAVALYI--TQNHFAK 282
           N++++ A+ L     Q +F K
Sbjct: 133 NIASSVAIILSENLRQTNFNK 153


>gi|332139948|ref|YP_004425686.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549970|gb|AEA96688.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 154

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R ++L
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFDWDDKRVRRAGLDYHEFAHVKRHASL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +    ++  K            ALI G E +GL     ++        
Sbjct: 64  DAYLEDAKPN--RVFACTTKGKAFHSDVSYQKGDALIFGPETRGLPDDYIQSLPPEQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA +V +Y +   F 
Sbjct: 122 IPMLPDSRSMNLSNAVSVFVYESWRQFG 149


>gi|282882563|ref|ZP_06291184.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|300814611|ref|ZP_07094862.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297705|gb|EFA90180.1| probable tRNA/rRNA methyltransferase [Peptoniphilus lacrimalis
           315-B]
 gi|300511230|gb|EFK38479.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 154

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GAI R+    +    +        +   + ++       +      +  D L++  
Sbjct: 12  PFNTGAIARTCGLTNTRLHLIKPLGFEIDDKHVKRAGLDYWHLVDISIYDSYDDLLKRFP 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHM---PGI 259
           +  F     ++ + K       ND+  ++ G E +GL              + M    G 
Sbjct: 72  NSRF--YLATTKASKLYTDVKYNDEDVIVFGPETRGLPEDLIFSNYDDAIKIPMLKNYGR 129

Query: 260 IKALNVSNAAAVALYI--TQNHF 280
             +LN+SN+A + L+    QN+F
Sbjct: 130 --SLNLSNSANIILFEALRQNNF 150


>gi|57650645|ref|YP_186738.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87160191|ref|YP_494488.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195679|ref|YP_500485.1| hypothetical protein SAOUHSC_01988 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221959|ref|YP_001332781.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161510073|ref|YP_001575732.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142161|ref|ZP_03566654.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452654|ref|ZP_05700653.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5948]
 gi|262050147|ref|ZP_06023001.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
 gi|262052684|ref|ZP_06024876.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
 gi|282924188|ref|ZP_06331863.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9765]
 gi|284024902|ref|ZP_06379300.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294850285|ref|ZP_06791020.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|304380541|ref|ZP_07363216.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|57284831|gb|AAW36925.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126165|gb|ABD20679.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203237|gb|ABD31047.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374759|dbj|BAF68019.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368882|gb|ABX29853.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257859629|gb|EEV82478.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A5948]
 gi|259159433|gb|EEW44485.1| hypothetical protein SA930_0820 [Staphylococcus aureus 930918-3]
 gi|259161772|gb|EEW46360.1| hypothetical protein SAD30_1111 [Staphylococcus aureus D30]
 gi|269941326|emb|CBI49723.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282592983|gb|EFB97985.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           A9765]
 gi|294822901|gb|EFG39335.1| RNA methyltransferase [Staphylococcus aureus A9754]
 gi|302751664|gb|ADL65841.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304340870|gb|EFM06795.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196795|gb|EFU27139.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141294|gb|EFW33139.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143578|gb|EFW35358.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314531|gb|AEB88944.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329729497|gb|EGG65899.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 156

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       ++  +L ++     E +      ++
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTNTHLHLIKPLGFRTDDKMLKRAGLDYWEFVNITYHDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK---NDKIALILGAEGKGLRPKTQET-ATSM 251
               +  +   +    L+   KK          +     I G E  GL    +E    + 
Sbjct: 65  EAFFEVTNGEYYL---LTKFGKKTYSDFDFSNHDKDFYFIFGKETTGLPDWVKEKYQDTA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I++LN+SN AA+ +Y     
Sbjct: 122 LRIPMSEHIRSLNLSNTAALLIYEALRQ 149


>gi|294140359|ref|YP_003556337.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293326828|dbj|BAJ01559.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
           DSS12]
          Length = 252

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL   + P NIG+  R+        +   +     +   +A  A+GA + + + + + +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKVQPDGHSVA-LAAGASDILKHAVIVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           + +A+          I  S+ S+                     +  +A++ G E  GL 
Sbjct: 66  VAEAIADCS----LVIATSARSRTLDWPMLEPREAGEKLVASALDGPVAIVFGRENNGLS 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A  +  Y  +
Sbjct: 122 NEELQKCNYHVSIPANPEYTSLNLAQAVQIICYEAR 157


>gi|322826123|gb|EFZ30881.1| hypothetical protein TCSYLVIO_2824 [Trypanosoma cruzi]
          Length = 383

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 93/288 (32%), Gaps = 40/288 (13%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGV-HTVSAALNNPSRKIFQLLATKNALARLDWDAN 86
           R         +++RH  +     ++G    +  A  +   +   +           W   
Sbjct: 60  RQLWNSTKLLRENRHMRRSFGACVFGGASAIQHAWRDYKIQPHVVYVPNTEPTVPAWCLE 119

Query: 87  LPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL------LMVLDH 140
              P  V    P  I+K +       G A E     + +L+    +        ++VL  
Sbjct: 120 DELPTCVVCCSPVDINKTLLSAERGDGYAAEFPTPKTHSLETFLGAHKPSRLGSVLVLVG 179

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           +  P N+G ++R+AV    + ++            + +++ G +             ++ 
Sbjct: 180 LRIPSNVGVLIRAAVDMGFESVLL-DDCVDVFHEKVLRASGGRVFSPNIKIFETHGASIP 238

Query: 201 KMHS-----WGFQTIGLSSDSKKPLEQEIKN-----------------------DKIALI 232
            + S          + L S   +P  Q  +                          + L+
Sbjct: 239 LLSSIALEHQLLPLLALPSREAEPAFQVARRLHESNAARRRNRDPDAGSTDDHLGPM-LV 297

Query: 233 LGAEGKGLRPKTQETAT--SMAHLHMPGI-IKALNVSNAAAVALYITQ 277
           LG+E KGLR    E         + +P   I ++NVS A +V L+  +
Sbjct: 298 LGSESKGLRGLEGEWTVPYRAVSIPLPNSFIDSINVSVAGSVLLHAFR 345


>gi|332524134|ref|ZP_08400364.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107473|gb|EGJ08697.1| putative tRNA/rRNA methyltransferase protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 156

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G ++R A    C   +        +   L ++     E+ P  R ++ 
Sbjct: 4   IVLVHPEIPPNTGNVIRLAANTGCRLHLVEPLGYSMDDKQLRRAGLDYHEYAPVRRHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +    ++    PL ++       L+ GAE  GL  +       +    
Sbjct: 64  DALLESERPDPARMFAFTTRGSHPLAEQRWQAGDWLVFGAESAGLPAELLARFPDSQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AVA++     
Sbjct: 124 LPMRAGQRSLNLSNAVAVAVFDAWRQ 149


>gi|312864593|ref|ZP_07724824.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
           F0415]
 gi|311099720|gb|EFQ57933.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus downei
           F0415]
          Length = 182

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 8/168 (4%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +   P +       +    +++ +    P N G I R+  A +    I      P     
Sbjct: 1   MVVQPFIQENYHETQGRNHVVLFE-PQIPANTGNIARTCAATNSPLHIIRPMGFPINDRK 59

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++     + +      +L + L K           +  +   +      D    I G 
Sbjct: 60  MKRAGLDYWDKLDIRFYDSLLEFLDKCQGQVHLVSKFAQKTYSEVNYADDQDHY-FIFGR 118

Query: 236 EGKGLRPK-TQETATSMAHLHMPG-IIKALNVSNAAAVAL--YITQNH 279
           E KGL     +E  T    + M    +++LN+SN   V +  Y     
Sbjct: 119 EDKGLPEDFMREHVTKAIRIPMNDQHVRSLNLSNT--VCMIVYEALRQ 164


>gi|171742048|ref|ZP_02917855.1| hypothetical protein BIFDEN_01152 [Bifidobacterium dentium ATCC
           27678]
 gi|283456825|ref|YP_003361389.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|171277662|gb|EDT45323.1| hypothetical protein BIFDEN_01152 [Bifidobacterium dentium ATCC
           27678]
 gi|283103459|gb|ADB10565.1| tRNA/rRNA methyltransferase [Bifidobacterium dentium Bd1]
          Length = 320

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
             +++ L   +  + +   + I L       P+E      +  ++ GAEG GL  K  E 
Sbjct: 225 LAQLAELESKIADLQTA--RIIALDIIPGAVPMETYHFPKRCLMLFGAEGPGLSEKALEL 282

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
           A  + ++   G ++++N   AAAV+++     H
Sbjct: 283 ADDVVYISQFGSVRSINAGAAAAVSMHAWIAQH 315



 Score = 36.6 bits (84), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA    +  + +++     NIG+++R+A AF    +     +    +        
Sbjct: 74  IKADLDAHGRHEFEVAVENWTHDFNIGSMVRTANAFQASRVHIVGPH--KWNRK------ 125

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           GAL    Y  + N     + +  W ++  G
Sbjct: 126 GALMTELYQHVENHPSIAELVECWKYRISG 155


>gi|317508477|ref|ZP_07966145.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
 gi|316253225|gb|EFV12627.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
          Length = 154

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 4/137 (2%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G+++R + A  C+  +            L ++     +    +   +L  AL+ +  
Sbjct: 13  GNTGSMIRVSAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLAHVVVHPDLATALRAV-- 70

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKA 262
            G +    ++            +   L+ G E  GL  +            + M    ++
Sbjct: 71  PGARVFAFTTSGSARHSDIAYQEGDVLLFGPEPTGLPEEVARHPRVAERLRIPMLAGRRS 130

Query: 263 LNVSNAAAVALYITQNH 279
           LN++NAA +A+Y     
Sbjct: 131 LNLANAATLAVYEAWRQ 147


>gi|325267126|ref|ZP_08133794.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
           33394]
 gi|324981364|gb|EGC17008.1| TrmH family RNA methyltransferase [Kingella denitrificans ATCC
           33394]
          Length = 174

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 4/153 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           V N+   +VL     P N G I+R      C   +      P +S+ + ++     E   
Sbjct: 17  VLNNMFTVVLYQPEIPPNTGNIIRLCANTGCSLHLVKPLGFPLDSSKMKRAGLDYHEFAR 76

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                N  + +Q +   G +   L++      ++         + G E +GL  +  +T 
Sbjct: 77  LTVHENWEECMQAL--AGRRIFALTTKGTARPDKAAFQAGDVFVFGPETRGLPAEILDTL 134

Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    M    +++N+SN  AV ++     
Sbjct: 135 PENQKIRFPMLPDNRSMNLSNTVAVTVFEAWRQ 167


>gi|148642454|ref|YP_001272967.1| rRNA methylase [Methanobrevibacter smithii ATCC 35061]
 gi|148551471|gb|ABQ86599.1| rRNA methylase, SpoU family [Methanobrevibacter smithii ATCC 35061]
          Length = 301

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 21/181 (11%)

Query: 112 QGLALETAPLL--SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +G+ +   P       L   +N+  ++ ++    P NIG + R+   F    ++      
Sbjct: 47  RGIKIAKGPEDDGEKELSNFKNNIYIVFVE-CETPGNIGFLARTMANFGLKNLVL--INP 103

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL--------- 220
           P+ +      A+     +   +I +  D   +     F+                     
Sbjct: 104 PTLTPEAFYQATHGKYIVDNAKIYHTLDEFYQSQRIDFKVASTGVAGGSYNLSRIPVRPE 163

Query: 221 ---EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYI 275
              +    N+K A++ G EG GL  +  E       +       I  LN+S+AAA+  Y 
Sbjct: 164 NLGKNINTNNKTAILFGREGNGLTNEEIEDCDICVSIPTDPTYPI--LNISHAAAIIFYE 221

Query: 276 T 276
            
Sbjct: 222 L 222


>gi|114561495|ref|YP_749008.1| RNA methyltransferase [Shewanella frigidimarina NCIMB 400]
 gi|114332788|gb|ABI70170.1| RNA methyltransferase, TrmH family, group 2 [Shewanella
           frigidimarina NCIMB 400]
          Length = 154

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R          +        E   L ++     +     R  N T  L+ M   
Sbjct: 14  NTGNIIRLCANNGSQLHLIEPLGFDLEEKKLRRAGLDYSDLTSVTRHKNYTAFLEAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIKAL 263
           G + I  ++   +P  Q    +   L+ G E +GL     +         + M    ++L
Sbjct: 72  GKRIIACTTKGSRPHTQIAFQENDVLLFGPETRGLPMDIIDATPLAQRLRIPMTANSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SN+ A+  Y       
Sbjct: 132 NLSNSVAIISYEAWRQLG 149


>gi|228476565|ref|ZP_04061247.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           salivarius SK126]
 gi|228251760|gb|EEK10825.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           salivarius SK126]
          Length = 169

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + K        +   +D     E          + G E  GL     +E       +
Sbjct: 66  ADFMSKNQDGRLHLVTKFADKTYSDENYADGGDHYFMFGREDTGLPEDFMREHPEKAIRI 125

Query: 255 HMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            M    +++LNVSN   V +  Y    Q  FA
Sbjct: 126 PMNDEHVRSLNVSNT--VCMIVYEALRQQQFA 155


>gi|302392645|ref|YP_003828465.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium
           arabaticum DSM 5501]
 gi|302204722|gb|ADL13400.1| RNA methyltransferase, TrmH family, group 2 [Acetohalobium
           arabaticum DSM 5501]
          Length = 152

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++   + ++     + +      + 
Sbjct: 3   IVLYQPEIPPNTGNIARTCACTGASLHLIRPLGFSTDEKAVRRAGLDYWDKVDVNYYDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT----QETATSM 251
            +  +K     F        SK   E E K+D   L+ G E  GL  +     +E     
Sbjct: 63  RELEEKYSDHNFY-FATKFASKFYTEIEYKSDDF-LVFGQETAGLPEEITERYKENC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   ++ALN++N+ ++ LY     
Sbjct: 118 IRIPMLKEVRALNLANSVSIILYEALRQ 145


>gi|315652201|ref|ZP_07905196.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315485507|gb|EFU75894.1| TrmH family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 165

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 10/150 (6%)

Query: 135 LMVLD-HVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++L+  +  P N G I RS VA +    +            + ++     E +     S
Sbjct: 3   IVLLEPEI--PDNTGNIGRSCVATNTRLHLIEPLGFKLSEKRIKRAGMDYWEKLDLTVYS 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETAT 249
           +L D  +K           ++ +    +  + +    ++ G E  G+  +      E   
Sbjct: 61  DLKDFYEKNPKAKEHMYFATTKAHHTYKDVLYDCDEYIMFGKESAGIPEEILAENEENC- 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M G I++LN+SN+ AV LY   + 
Sbjct: 120 --IRIPMWGDIRSLNLSNSVAVILYEALSQ 147


>gi|295687973|ref|YP_003591666.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295429876|gb|ADG09048.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 152

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS---GALEHIPYIRISNLTDALQ 200
           P N+GA +R +  F   G+   +  S        K A+   G L H+   R  +    L+
Sbjct: 11  PQNVGAAIRLSACFGV-GLDVIEPCSFPLDDKSLKRAALDYGPLAHLK--RHDSWGAFLK 67

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
                  + +  ++    P  +        L+ G E +G   +          + +    
Sbjct: 68  APERVDGRLLLFTTRGATPFHRFEFAPGDTLLFGNESRGAPEEVHAAVHGRIIIPIRPET 127

Query: 261 KALNVSNAAAVALYITQNH 279
           +++N++  AA+AL      
Sbjct: 128 RSMNLATTAAMALGEALRQ 146


>gi|119899105|ref|YP_934318.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
 gi|119671518|emb|CAL95431.1| tRNA/rRNA methylase [Azoarcus sp. BH72]
          Length = 177

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 4/155 (2%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +A + +   ++L     P N G I+R A    C   +            LA++     + 
Sbjct: 8   EARQRAMFHIILFEPEIPPNTGNIIRLAANTGCHLHLVEPLGFVLTDKALARAGLDYHDL 67

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                 ++       +     +   L++ +++  +        A + G E +GL P+ +E
Sbjct: 68  ARVTVHTDWPACRAFLGER--RVFALTTRAQRRHDTVDFRPGDAFLFGPESRGLPPELRE 125

Query: 247 TA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +        L M    +++N+SNA AV ++     
Sbjct: 126 SLPPEQRLRLPMVPSNRSMNLSNAVAVMVFEAWRQ 160


>gi|86610208|ref|YP_478970.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558750|gb|ABD03707.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 276

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 17/154 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +VL     P N+GAI R          ++   +  P +   +  +  GA       ++  
Sbjct: 17  LVLVQPAGPRNLGAIARVMKNMGFRQWVLVDPQCDPLDIEAITTAVHGADLLHQARKVQT 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIAL-----------ILGAEGKGLRP 242
           L +ALQ       Q  G +  S+  P E +I++ + A            + G E +GL  
Sbjct: 77  LPEALQGC----VQVFGTTGRSQTYPPEWQIQSPRQAFPALLAAGPAALVFGPEDRGLSN 132

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +          +       +LN++ A A+  Y  
Sbjct: 133 EELALCHRQIQIPTDATYPSLNLAQAVAICCYEL 166


>gi|237747425|ref|ZP_04577905.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
 gi|229378776|gb|EEO28867.1| RNA methyltransferase TrmH [Oxalobacter formigenes HOxBLS]
          Length = 156

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P + A + ++     E       S+ 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTGAQLHLIEPLGFPLDDAKMRRAGLDYHEFAKIKVYSSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           +D LQKM     +   L++       +   +     + G+E KGL  +            
Sbjct: 64  SDFLQKMSPDPSRMFALTTHGSPCFSKTSFHAGDLFVFGSETKGLSLEIHRFFPEGHQIR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN+ A+ +Y    QN FA
Sbjct: 124 LPMRPHNRSLNLSNSVAIVVYEAWRQNGFA 153


>gi|114049292|ref|YP_739842.1| RNA methyltransferase [Shewanella sp. MR-7]
 gi|113890734|gb|ABI44785.1| RNA methyltransferase, TrmH family, group 2 [Shewanella sp. MR-7]
          Length = 154

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R          +        E   L ++     +     R  N    L+ M   
Sbjct: 14  NTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRHKNFDAFLEAM--T 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +P  +        L+ G E +GL     E+        + M    ++L
Sbjct: 72  GKRIMACTTKGSRPHTELSFAKDDVLLFGPETRGLPMPIIESIPTEQRLRIPMAATSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQLG 149


>gi|325690961|gb|EGD32961.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK115]
          Length = 184

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 21/158 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLNITYYESL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA------LILGAEGKGLRPK-TQETA 248
            D +++M    +          K  E+    +K A       + G E KGL  +  +   
Sbjct: 82  GDFMEQMDGRLYLI-------SKFAEKVYSEEKFAAEGSHYFMFGREDKGLPEEFMRRHP 134

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
                + M    +++LNVSNA  V +  Y    Q +FA
Sbjct: 135 EKALRIPMNDQHVRSLNVSNA--VCMIVYEALRQQNFA 170


>gi|208778946|ref|ZP_03246292.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
 gi|254372520|ref|ZP_04988009.1| hypothetical protein FTCG_00082 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570247|gb|EDN35901.1| hypothetical protein FTCG_00082 [Francisella novicida GA99-3549]
 gi|208744746|gb|EDZ91044.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
          Length = 155

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   L ++     E        N  +  Q+  
Sbjct: 12  PPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIYKNFAEFYQQNK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
               Q    ++ +K+   Q   +    L+ G E +GL     E        + M    ++
Sbjct: 72  DK--QIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQLKIPMHKNSRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 130 LNLSNSVAVILYGALNNIG 148


>gi|118497153|ref|YP_898203.1| RNA methyltransferase [Francisella tularensis subsp. novicida U112]
 gi|134302459|ref|YP_001122429.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|194323451|ref|ZP_03057228.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|254373981|ref|ZP_04989463.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548]
 gi|118423059|gb|ABK89449.1| RNA methyltransferase, SpoU family [Francisella novicida U112]
 gi|134050236|gb|ABO47307.1| RNA methyltransferase, TrmH family, group 2 [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151571701|gb|EDN37355.1| tRNA/rRNA methyltransferase [Francisella novicida GA99-3548]
 gi|194322306|gb|EDX19787.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
           novicida FTE]
 gi|328676622|gb|AEB27492.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida
           Fx1]
          Length = 155

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   L ++     E        N  +  Q+  
Sbjct: 12  PPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIYKNFAEFYQQNK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
               Q    ++ +K+   Q   +    L+ G E +GL     E        + M    ++
Sbjct: 72  DK--QIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQLKIPMHKNSRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 130 LNLSNSVAVILYGALNNIG 148


>gi|305664515|ref|YP_003860802.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
           HTCC2170]
 gi|88708532|gb|EAR00768.1| RNA methyltransferase, TrmH family, group 2 [Maribacter sp.
           HTCC2170]
          Length = 150

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 4/151 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P+N G I R A+A   +  +        +   L ++      HI     
Sbjct: 2   PLNIVLFEPEIPNNTGNIGRLALATGSNLHLVKPFGFELDDKRLKRAGLDYWPHISLFTY 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSM 251
            N+ +  ++ +      +  SS  +K        D + LI G E  GL  +  +  +  +
Sbjct: 62  ENIEEFYKQHNDKN--LVYFSSHGEKNHWSIDYKDDMYLIFGKESVGLPKEILQNNSDKL 119

Query: 252 AHLHM-PGIIKALNVSNAAAVALYITQNHFA 281
             + +    I++LN++NA  V +Y       
Sbjct: 120 YKIPLFSSKIRSLNLANAVGVTIYEGLRQLG 150


>gi|695296|gb|AAB41449.1| spoU [Chlamydia trachomatis]
          Length = 119

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGF---QTIGLSSDSKKPL-EQEIKNDKI 229
             + ++     E +    + +L +AL      G    +   L++       E+E+  D  
Sbjct: 9   KFVKRAGMDYWERLSLSVVDSLEEAL-----LGVPKERIFCLTTKGSSYYGERELPLDGT 63

Query: 230 ALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             I GAE KGL     +  ++   ++ M    ++LN++ +  + +Y     
Sbjct: 64  -YIFGAESKGLSQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 113


>gi|124022607|ref|YP_001016914.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9303]
 gi|123962893|gb|ABM77649.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 249

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 18/165 (10%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEH 186
            +R+ Q  +VL     P N+G++ R    F    +           A   + A  GA   
Sbjct: 4   DIRSIQTTVVLVEPIGPLNLGSVARLCANFGVQELRLVSPRCDPADAEARRMAVHGAAML 63

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS---DSKKPLE----------QEIKNDKIALIL 233
               + S L DA+   H    + +           PL+          + +    +AL+ 
Sbjct: 64  EQAKQFSCLLDAVADCH----RVVASCGRLDHGNIPLQPPEQAVPWLLESMGAAPVALVF 119

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           G E +GL  +  + A  +  LH      +LN+S+A A+ L+  Q 
Sbjct: 120 GREDRGLTNEELQLAQRVITLHSSYGYPSLNLSHAVAIVLHELQR 164


>gi|297537769|ref|YP_003673538.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297257116|gb|ADI28961.1| RNA methyltransferase, TrmH family, group 2 [Methylotenera sp. 301]
          Length = 154

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E+       N 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGAALHLVKPLGFSLDDKQLKRAGLDYHEYSTMQVHENW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
                 +   G +   +++       +     +   + G E +GL  + +   TA     
Sbjct: 64  EACKASL--TGKRLFAITTKGSTRHSEIQFKAEDVFVFGPETRGLPEEIRAEFTAEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN+AAV LY       
Sbjct: 122 LPMLPDSRSLNLSNSAAVLLYEAWRQIG 149


>gi|229823128|ref|ZP_04449197.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271]
 gi|229787294|gb|EEP23408.1| hypothetical protein GCWU000282_00425 [Catonella morbi ATCC 51271]
          Length = 175

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 10/145 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++  +L ++     EH+      +L D L  + 
Sbjct: 13  PANTGNISRTCAATNTPLHLIKPLGFSTDDKMLKRAGLDYWEHVEVHYHESLEDFLAFVG 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQE--TATSMAHLHMP 257
                   ++  + +   Q       A     + G E  GL     E   A     + M 
Sbjct: 73  ER--PLYLITKFAPRIYCQADLAQNSAGEQFFLFGKETTGLPADLMEERKAD-CLRIPMN 129

Query: 258 G-IIKALNVSNAAAVALYITQNHFA 281
              +++LN+SN A + +Y      A
Sbjct: 130 DQHVRSLNLSNTANIVIYEALRQQA 154


>gi|229822119|ref|YP_002883645.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229568032|gb|ACQ81883.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 222

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R     + ++++    NIG+I+RSA AF    +    R          + A     + 
Sbjct: 67  DTRRHPFHVAIENLRHDLNIGSIVRSANAFGAARVHVVGRR-----RWNRRGAMVTDRYQ 121

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
                ++           G   + +       PLE+        L+ G EG GL     E
Sbjct: 122 HVDHHADAGALAVWAELAGLPIVAIDNVPGSTPLERGGLPRACVLLFGQEGAGLTADALE 181

Query: 247 TATSMAHLHMPGIIKALN 264
            A  + H+   G  +++N
Sbjct: 182 AAAEVRHITQFGSTRSVN 199


>gi|170724634|ref|YP_001758660.1| RNA methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169809981|gb|ACA84565.1| RNA methyltransferase, TrmH family, group 2 [Shewanella woodyi ATCC
           51908]
          Length = 154

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +     R  +    LQ M   
Sbjct: 14  NTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYNDLTRVTRHKDFESFLQAM--E 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G + +  ++   +   +     +  L+ G E +GL  +  E+   +    + M    ++L
Sbjct: 72  GKRIMACTTKGSRHHTELSFEKEDVLLFGPETRGLPIEIIESLPTSQRLKIPMTPNSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  Y       
Sbjct: 132 NLSNAVAIISYEAWRQIG 149


>gi|24373814|ref|NP_717857.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24348212|gb|AAN55301.1|AE015668_2 RNA methyltransferase, TrmH family, group 1 [Shewanella oneidensis
           MR-1]
          Length = 241

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 22/163 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PSESAVLAKSASGALEHIPYIRIS 193
           ++L   + P NIG+  R+        +   +       +S  LA  AS  L+H+  +++ 
Sbjct: 7   VILVGTSHPGNIGSTARAMKTMGLSTLYLAEPRCEVDGQSIALAAGASDILKHL--VKVD 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-------------NDKIALILGAEGKGL 240
           +L +A+          I  S+ S+      ++                +A++ G E  GL
Sbjct: 65  SLQEAIADCS----LVIATSARSRTLDWPMLEPREAGQKLVTEGITGPVAIVFGRENHGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
             +  +  T    +       +LN++ A  +  Y T+  H A+
Sbjct: 121 TNEELQQCTYHVAIPANPEYSSLNLAQAVQIICYETRVAHLAQ 163


>gi|217966578|ref|YP_002352084.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
 gi|217335677|gb|ACK41470.1| tRNA/rRNA methyltransferase (SpoU) [Dictyoglomus turgidum DSM 6724]
          Length = 153

 Score = 66.6 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 3/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R  VA +    +  K         L ++       + Y    N 
Sbjct: 7   VVLIEPQIPYNTGNIGRLCVATNSKLHLVGKIGFSLNDKYLKRAGLDYWSFLDYEVYKNF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            + ++   +   + I + S + K   +    +   LI G+E  G+  +  E        +
Sbjct: 67  EEFVE--RNKNGRFIFVESPAFKLYTEVSYQEGDYLIFGSEDYGIPSEIIEKYWENSVTI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M G +++LN+S++ AV +Y       K
Sbjct: 125 PMFGPVRSLNLSSSVAVVVYEALRQIKK 152


>gi|123966176|ref|YP_001011257.1| SpoU family tRNA/rRNA methyltransferase [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200542|gb|ABM72150.1| putative tRNA/rRNA methyltransferase (SpoU family) [Prochlorococcus
           marinus str. MIT 9515]
          Length = 160

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 13/148 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+I R+  AF     +        E   L ++    L++ P ++++N  +  +   
Sbjct: 11  PQNTGSIARTCAAFDITLNLIEPLGFKLEDKYLKRA---GLDYWPLVKLNNYPNFKKFKE 67

Query: 204 SWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---- 258
           S    + I  S  +   L +        L+ G E  GL       + S+  + MP     
Sbjct: 68  SKKNKRIIAFSKKNGIYLNRFRFLKDDILLFGREDTGLPESVINGSNSLISIFMPNVELS 127

Query: 259 -----IIKALNVSNAAAVALYITQNHFA 281
                 +++LN+S A  +A+Y       
Sbjct: 128 NNDKKGVRSLNLSVACGIAIYEANKQIN 155


>gi|159486240|ref|XP_001701150.1| tRNA (guanosine)-2'-O-methyltransferase [Chlamydomonas reinhardtii]
 gi|158271953|gb|EDO97762.1| tRNA (guanosine)-2'-O-methyltransferase [Chlamydomonas reinhardtii]
          Length = 113

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 5/108 (4%)

Query: 180 ASGALEHIPYIRIS--NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKN--DKIALILG 234
           A  +   +P   +S  +L   L +M + G+  +G+  +    PL+        ++ L+LG
Sbjct: 2   AVTSERWLPLREVSPRDLPAYLIEMRAAGYLLVGVEQAAGSVPLQSFAWPSHGRVVLLLG 61

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            E  G+         +   + M G+ ++LN   + A+A++       +
Sbjct: 62  NEQSGVPQPLLPLLDACVEIPMLGVTRSLNAHVSGAMAVWQYVQQRGR 109


>gi|325068666|ref|ZP_08127339.1| SpoU family rRNA methyltransferase [Actinomyces oris K20]
          Length = 152

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R +       +         + A L ++     +       +   + L+++ 
Sbjct: 12  PGNTGAAIRLSANTG-SMLHLVDPLFDMDDAKLRRAGLDYHDLANTRVHATWQECLEQIP 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +    +S +++   Q       AL+ G E  GL  +  +    ++   + M    +
Sbjct: 71  G---RIYAFTSHTERLYTQVDWRGDDALLFGPEPTGLPQEILDHPRVSAHLRIPMVEGNR 127

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++N+AA+ LY    
Sbjct: 128 SLNLANSAAIGLYEAWR 144


>gi|288942723|ref|YP_003444963.1| tRNA/rRNA methyltransferase SpoU [Allochromatium vinosum DSM 180]
 gi|288898095|gb|ADC63931.1| tRNA/rRNA methyltransferase (SpoU) [Allochromatium vinosum DSM 180]
          Length = 158

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +        +   L ++     E       ++L
Sbjct: 4   IILYEPEIPPNTGNVMRLTANLGARLHLIEPLGFSLDDRQLRRAGLDYREWADVRTHASL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
              L  +     + + +S+  + P          A + G E +GL     E+ +      
Sbjct: 64  AACLATLEQP--RLLAVSTRGRVPYVDLEFQPGDAFLFGPETRGLPESVLESVSEEHRLQ 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SNA AV LY     
Sbjct: 122 IPMRPGNRSLNLSNAVAVVLYEAWRR 147


>gi|91787138|ref|YP_548090.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91696363|gb|ABE43192.1| RNA methyltransferase TrmH, group 2 [Polaromonas sp. JS666]
          Length = 183

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        +   + ++     E+   +R ++ 
Sbjct: 23  IVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRHASW 82

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L        +   +++     +          L+ GAE +GL P  +E+        
Sbjct: 83  QALLDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFGAETRGLAPDVRESFPMAQRLR 142

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           + M    ++LN+SN  AV ++    QN FA
Sbjct: 143 VPMQPGQRSLNLSNTVAVTVFEAWRQNGFA 172


>gi|85373106|ref|YP_457168.1| putative RNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84786189|gb|ABC62371.1| putative RNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 152

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 4/139 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N GA+ R+ VA   + ++        +   + +S      HI  +  ++ 
Sbjct: 4   IVLVHPEIPGNTGAVGRTCVALDMELVLIHPLGFAIDDKRVKRSGLDYWPHIRLVECASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
              L +      Q       + +   +        L+ G E KGL           M  L
Sbjct: 64  DAFLAERAPRADQLFLFEEYAPRSFYEPDYPKDAYLVFGRETKGLPQGIVAAHRAQMVSL 123

Query: 255 HMPG-IIKALNVS--NAAA 270
            M    +++LN++   AAA
Sbjct: 124 PMRSDKVRSLNLANTVAAA 142


>gi|315127782|ref|YP_004069785.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315016296|gb|ADT69634.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 154

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R ++ 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYSLHLIEPLGFEWDDKRVKRAGLDYHEFSHVQRHASF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+K      +    ++   +   Q        L+ G E +GL     +         
Sbjct: 64  DAYLEKCQPK--KVYACTTKGSQFHHQAQYEAGDCLVFGPETRGLPDDMIQALPNEQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA AV +Y +     
Sbjct: 122 IPMQADSRSMNLSNAVAVFVYESWRQLG 149


>gi|325499155|gb|EGC97014.1| tRNA/rRNA methyltransferase YibK [Escherichia fergusonii ECD227]
          Length = 157

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  N 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHNY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFLKAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPSSILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|270265196|ref|ZP_06193458.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
 gi|270040830|gb|EFA13932.1| hypothetical protein SOD_l00460 [Serratia odorifera 4Rx13]
          Length = 157

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P +   L ++     E     R ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIEPMGFPWDDKRLRRAGLDYHEFANIRRHADY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              +        +   T G  + S    +         L+ G E +GL  +  E   A  
Sbjct: 64  AAFIASENPQRLFALTTKGTPAHSAVSYQPGDY-----LLFGPETRGLPAEILEALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y      
Sbjct: 119 KIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148


>gi|284923642|emb|CBG36739.1| putative RNA-methyltransferase [Escherichia coli 042]
          Length = 157

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  RAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LVFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|242374104|ref|ZP_04819678.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348229|gb|EES39831.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 156

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 9/151 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     EH+      ++
Sbjct: 5   IVLFQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITYHESI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQET-ATSM 251
               +      +    L+   K+       +   ++   I G E  GL    +E  A + 
Sbjct: 65  EAFFESTEGNYYL---LTKFGKQTYSDFNFSNTEEEHYFIFGRETTGLPNWVKEKYADTA 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
             + M   I++LN+SN AA+ +Y    Q  F
Sbjct: 122 LRIPMSDKIRSLNLSNTAALLIYEALRQQQF 152


>gi|238926814|ref|ZP_04658574.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
           43531]
 gi|238885346|gb|EEQ48984.1| rRNA methyltransferase family protein [Selenomonas flueggei ATCC
           43531]
          Length = 165

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 15/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R       +  +       ++   L ++       +      + 
Sbjct: 3   IVLVEPEIPGNTGNIARLCAGTGMELHLVRPLGFSTDDKHLKRAGLDYWHLVRVHYHDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSK---KPLEQEIKNDKIALILGAEGKGLRPKTQETATS-- 250
               Q+ +   F      +         + +       L+ G E  GL            
Sbjct: 63  AALHQQYYEHTFYFCSTKAHHSYCDISYKTDDF-----LVFGKESAGLPESLL--TDYEA 115

Query: 251 -MAHLHMPGIIKALNVSNAAAVALYI--TQNHFA 281
               + M    ++LN+SNA AV  +    Q+ FA
Sbjct: 116 NTIRIPMREEARSLNLSNAVAVVAFEALRQHRFA 149


>gi|70733879|ref|YP_257519.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68348178|gb|AAY95784.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas
           fluorescens Pf-5]
          Length = 151

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+    R ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCHLHLIEPLGFEMDDKRLRRAGLDYHEYATLQRHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+ +     +    ++   +P       +  A + G E +GL     +         
Sbjct: 64  ASCLESLGHP--RLFAFTTKGSRPFHDASFQEGDAFLFGPESRGLPADVLDALPGEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  AVA+Y       
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEGWRQLG 149


>gi|297568789|ref|YP_003690133.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924704|gb|ADH85514.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 164

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
              +VL     P N G+I R   A      +        +   L ++     + I  +  
Sbjct: 16  PFNVVLVEPEIPPNTGSIARLCGATDTILHLVHPLGFKIDDKHLKRAGLDYWDQIKIVNW 75

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSM 251
           S+L   L            LS  + +   +        L+ G E KGL  +T    A   
Sbjct: 76  SDLDAFLTAQDEQRLHF--LSKKADRLYTEVRFQPGDFLVFGKETKGLPEETLALYADRC 133

Query: 252 AHLHMPG-IIKALNVSNAAAVALYITQNH 279
             + M    I+++N++ AAAV LY     
Sbjct: 134 CAIPMSNPAIRSINLAQAAAVVLYEAIRQ 162


>gi|171464223|ref|YP_001798336.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193761|gb|ACB44722.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 156

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P E A L ++     E        N 
Sbjct: 4   VVLFEPEIPPNTGNIIRLCANTGAKLHLIEPLGFPMEDAKLRRAGLDYHEFARVKVYKNW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              LQ  H        L++       +   +     + G+E KG+  + + +  A +   
Sbjct: 64  AQFLQDEHPNPEHLFALTTKGSGNFHEGQYSPNDYFVFGSETKGITDEVRNSIPAHNRMR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  A+ +Y     
Sbjct: 124 LAMQDSSRSLNLSNTVAIVVYEAWRQ 149


>gi|324111936|gb|EGC05916.1| RNA methyltransferase [Escherichia fergusonii B253]
          Length = 157

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  N 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHNY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFLKAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPSSILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|227873071|ref|ZP_03991365.1| tRNA methylase SpoU [Oribacterium sinus F0268]
 gi|227841052|gb|EEJ51388.1| tRNA methylase SpoU [Oribacterium sinus F0268]
          Length = 170

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N GAI R+ VA      +            + K+       +      + 
Sbjct: 3   IVLHEPEIPFNTGAIGRTCVATKSTLHLIKPYGFILNDKNIKKAGMDYWPLLKLREYISY 62

Query: 196 TDAL----QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ET 247
            + +    ++      +    ++ + K   +   +    ++ G E  G+  +      E 
Sbjct: 63  EEFMAGVEEERKIALPKVWYATTKAHKTHTEVSFSPNDYIVFGKESAGIPEEILVDNEEQ 122

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M    ++LN+SN+ A+ LY     
Sbjct: 123 C---IRIPMLEEARSLNLSNSVAIILYEALRQ 151


>gi|322375851|ref|ZP_08050362.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300]
 gi|321279119|gb|EFX56161.1| RNA methyltransferase, TrmH family [Streptococcus sp. C300]
          Length = 180

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 21/158 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYDSL 77

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA------LILGAEGKGLRPK-TQETA 248
            D + +M     Q   +S  ++K   +      +A       + G E KGL     +E  
Sbjct: 78  EDFMSQMKG---QVYLISKFAEKVYSEAN----LASGEDQYFLFGREDKGLPEDFMREHP 130

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
                + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 131 EKALRIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 166


>gi|213583759|ref|ZP_03365585.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 216

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V   
Sbjct: 101 RRQRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160

Query: 100 TIDKIVGKEAVHQGLALETAPL----LSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + K  G E  H G+           +   +    +   ++ L+ V +PHN+G ++R
Sbjct: 161 ELAKASGTE-HHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMR 216


>gi|110835132|ref|YP_693991.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110648243|emb|CAL17719.1| RNA methyltransferase, TrmH family [Alcanivorax borkumensis SK2]
          Length = 156

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R A        +        E   L ++     E        + +   + + 
Sbjct: 12  PPNTGNIIRLAANTGAQLHLIEPLGFSLEEKKLRRAGLDYSEFAALQVHRDFSAFQESVV 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +   +++   +P  Q    D   L+ G E +GL  +  ++  AT    L M    +
Sbjct: 72  GQ--RLFAMTTKGSRPHSQACFQDGDVLLFGPETRGLPEQILDSLPATQRLRLPMVAESR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA AV LY       
Sbjct: 130 SLNLSNAVAVTLYEAWRQLG 149


>gi|213691175|ref|YP_002321761.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522636|gb|ACJ51383.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457233|dbj|BAJ67854.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 282

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 49/190 (25%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF    +     +  +    L     
Sbjct: 74  IKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHIVGPHKWNRKGALMTELY 133

Query: 182 GALEHIP----------------------------------------------YIRISNL 195
             +EH P                                                 I   
Sbjct: 134 QHVEHHPSIAELVESWHHRIAGEIAYERAKAGAAAIHAHDVAVDGNNKHLHELLAEIDAC 193

Query: 196 TDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              ++++ +   + I L       P+E      +  L+ GAEG GL  K+   A  + ++
Sbjct: 194 DARIKELQAA--RVIALDIIPGAVPMEAYTFPKRCLLLFGAEGPGLSDKSLALADDVVYI 251

Query: 255 HMPGIIKALN 264
              G ++++N
Sbjct: 252 SQFGSVRSIN 261


>gi|95929545|ref|ZP_01312287.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
 gi|95134242|gb|EAT15899.1| tRNA/rRNA methyltransferase (SpoU) [Desulfuromonas acetoxidans DSM
           684]
          Length = 243

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 29/170 (17%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----- 183
           +R+   ++VL     P N+GA+ R+   F    +   K       +   K + GA     
Sbjct: 1   MRHFTPIVVLVEPRQPGNVGAVCRAMANFGVAQLRLVKSC-DPFHSDAVKFSVGARPLLG 59

Query: 184 -LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK------PLEQ-------EIKNDKI 229
             EH P     +L  AL  +H      + L+  + +      PLE+            ++
Sbjct: 60  QAEHFP-----DLAAALADVHHS----VALTRRTGRLRGNLLPLEELSQRFQSVAAQSRV 110

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           A + G E +GL  +     +  A +       +LN++ A  V LY     
Sbjct: 111 AFVFGREDRGLTTQEVALCSQAATIETTDETGSLNLAQAVVVTLYELSRR 160


>gi|296138668|ref|YP_003645911.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
 gi|296026802|gb|ADG77572.1| tRNA/rRNA methyltransferase (SpoU) [Tsukamurella paurometabola DSM
           20162]
          Length = 154

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R A    C+  +            L ++     +       ++L  A   +   
Sbjct: 14  NTGNAIRLAAVTGCELHLVEPLGFDLSEPKLRRAGLDYHDLAHVRVHADLEAAWSALRPE 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +++   +   +    L+ G E  GL P+       T    + M    ++L
Sbjct: 74  --RVFAFTAHARRYHHEIAYSAGDVLMFGPEPTGLPPEALGDPHVTESVRIPMLASRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAV  Y     
Sbjct: 132 NLSNAAAVVAYEAWRQ 147


>gi|227505320|ref|ZP_03935369.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198022|gb|EEI78070.1| SpoU family rRNA methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 156

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           SQL +V D+   P N G  +R+A        +        +   L ++     +      
Sbjct: 2   SQLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFDDKHLKRAGLDYHDLADLQI 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
             +    +  +   G +    ++ + K        +   L+ G E  GL P+       T
Sbjct: 62  HKDFDACMAAL--PGARVFAFTTHTDKWFTDVEFQEGDVLLFGTEPTGLPPEHVNHPRIT 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M    +++N+SNAA+ A+Y       
Sbjct: 120 EQVRIPMVPARRSMNLSNAASTAVYEAWRQLG 151


>gi|319778873|ref|YP_004129786.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
           MCE9]
 gi|317108897|gb|ADU91643.1| tRNA (cytosine34-2'-O-)-methyltransferase [Taylorella equigenitalis
           MCE9]
          Length = 156

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 4/149 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G I+R +    C+  +        +   L ++     EH      + L
Sbjct: 4   IVLVSPEMPANVGNIIRLSANTGCNLHLVRPFLFHLDDKHLKRAGLDYHEHANIKIHNTL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP---KTQETATSMA 252
            +AL  + +   +   +S+  KK L           I G E  GL+              
Sbjct: 64  EEALNTIGTDRNRCFAISTKGKKHLSDINFQKGDVFIFGRESAGLKDYEWSIIGI-DQAV 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHFA 281
            + M    ++LN+SNA A+ +Y       
Sbjct: 123 RIPMKANSRSLNISNAVAITVYEAWRQIG 151


>gi|313682116|ref|YP_004059854.1| tRNA/rRNA methyltransferase (spou) [Sulfuricurvum kujiense DSM
           16994]
 gi|313154976|gb|ADR33654.1| tRNA/rRNA methyltransferase (SpoU) [Sulfuricurvum kujiense DSM
           16994]
          Length = 156

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 10/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P+N GAI R  V       +        +   + ++       I      ++
Sbjct: 4   IVLVNPQIPNNTGAIGRLCVNTGSSLHLIKPIGFDIDEKAVRRAGLDYWHKIDLHVWESI 63

Query: 196 TDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA 252
            + +    +    F     ++ +  P  +    +   L  G+E  G+  +  E       
Sbjct: 64  EEFMDAHPIKERFFF---ATTKTDIPYFEHEFQEGDYLFFGSETAGIPSEILEAYPKQTM 120

Query: 253 HLHMP--GIIKALNVSNAAAVALYITQNH 279
            + M   G   +LN++ ++ + LY     
Sbjct: 121 TIPMTKEGR--SLNLAISSGIILYEAIKQ 147


>gi|198437016|ref|XP_002120809.1| PREDICTED: similar to RNA methyltransferase like 1 [Ciona
           intestinalis]
          Length = 413

 Score = 66.2 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 106/353 (30%), Gaps = 91/353 (25%)

Query: 8   KSEKIFSLKDSHYAKLRRNHRD-YKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSR 66
           + E    L+   + K+    R+ ++KM +  + S +        L G + +  A+     
Sbjct: 69  REELPPPLEKLKFRKISNETRNLFRKMINNVKSSSYRENHNVCLLRGKNLIREAMIAGGF 128

Query: 67  KIFQLLATKNALARLDWDANLPHPFPVKT----VPPQTIDKIVGKEAVHQGLALETAPLL 122
            I  +  ++     L     LP     KT    VP   + ++  +     GL        
Sbjct: 129 -IRTIYFSE-----LKLLEKLPIDIVQKTNLVHVPIAAMREMSDERTD--GLFALATQQD 180

Query: 123 SPTLDAVRNSQL-------------LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           + T   +R  ++              ++ + + DP  +G IL+ A    C+ +       
Sbjct: 181 AKTRQKIRTQRIESVKQKESTILPVTLICEGIKDPKIMGDILKVASCVGCEEVYVMDGCV 240

Query: 170 PSESAVLAKSASGALEHIPYI---RISNLTDALQKMH----------SWGFQT------- 209
              +  + K   GA   +P +   +  N+   +                G          
Sbjct: 241 SIWNTSVLKRGGGAHFKLPILPNQQWENVEKLVSNSKPDAVFLSHNCEEGLTIIDFKQDP 300

Query: 210 IGLSSDSKKPLEQEIKNDKI------------------------------ALILGAEGKG 239
           + ++ +    +   +K +                                 L++G+    
Sbjct: 301 VVVAINKGSSVLDTLKRESTVKLDNKEDRIKNAHIPSINFDQANWPTKQSVLVVGS---- 356

Query: 240 LR----------PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +            +T E    + +L +    ++L+ S  A+V L+       K
Sbjct: 357 ISFGAYSFAVNLQETVEQC-HVINLPLSRKTESLSPSIEASVLLFDALRQIGK 408


>gi|323698127|ref|ZP_08110039.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. ND132]
 gi|323458059|gb|EGB13924.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           ND132]
          Length = 153

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 3/144 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   L ++       +      + 
Sbjct: 3   IVLFEPEIPPNTGNIARLCAATRTPLHLIEPLGFSIDDKHLKRAGLDYWPAVDLTVHPDF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L  +     + +  ++ ++    +       A++LG E +GL  +  E   +M  + 
Sbjct: 63  DHFLATV--APPRLVMATTKARIAHHRFAFRADDAIVLGPETRGLPMELME-GHAMVRIP 119

Query: 256 MPGIIKALNVSNAAAVALYITQNH 279
           + G +++LN+S A  + L+     
Sbjct: 120 IWGEVRSLNLSTATGILLFEALRQ 143


>gi|237745860|ref|ZP_04576340.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
 gi|229377211|gb|EEO27302.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes HOxBLS]
          Length = 259

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 15/168 (8%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSA 180
            P  D      L  +L   + P N+GA  R+      D +I  +    +          A
Sbjct: 3   QPKTDTSIFQSLRFILVGTSHPGNVGAAARAIKTMGFDRLILVRPRFENVLTHEEAIAFA 62

Query: 181 SGALEHIPYIR-ISNLTDALQ----------KMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
           SGA + +     +  +  AL+          ++  +    +     ++  L    K    
Sbjct: 63  SGAQDVLEKAEIVDTIDQALENCQFAAAITARLREFSPPVLTPRQFAETVLS--DKKKPC 120

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           AL+ G+E  GL  +  E   ++ ++       +LN++ A  V  Y  +
Sbjct: 121 ALVFGSERYGLPNEVVEQCQALINIPANPAYSSLNLAQAIQVLAYECR 168


>gi|77919150|ref|YP_356965.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77545233|gb|ABA88795.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter
           carbinolicus DSM 2380]
          Length = 244

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 18/161 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + + +VL     P NIG++ R+ + F    +      +        + A  A   +   R
Sbjct: 4   AHICVVLVEPQGPLNIGSVCRAMMNFGFSDLRLVNPVADHLCDDARRMAVKASGILEGAR 63

Query: 192 -ISNLTDALQKMHSWGFQTIGLS-------------SDSKKPLEQEIKNDKIALILGAEG 237
              +L  AL   +       G +              D+ +      +  ++A + G E 
Sbjct: 64  LFPDLPSALADCNLA----YGTTRRFGKYREDFLHPDDAAREFIPATQGGRVAWVFGRED 119

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           KGL     +       +       ++N++ + ++ LY T  
Sbjct: 120 KGLETSELDLCQRFVTIPTDDACPSMNLAQSVSICLYETSR 160


>gi|90418297|ref|ZP_01226209.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337969|gb|EAS51620.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 166

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 47/151 (31%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               + + L   +   N G I+R          I            L ++    L     
Sbjct: 12  EGPGISLALYQPDIAGNTGTIMRLGACLGLPVEIIEPAGFDLSDRALKRAGMDYLAMSRL 71

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           +R  +         + G + +  ++ S +            L+ G E  G+      TA 
Sbjct: 72  VRHVDFAAFDAARRAAGRRIVLFTTRSSEIYTDFTYEPGDVLMFGRESAGVTDAIHATAD 131

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   + M G  +++N++ AA +A        
Sbjct: 132 ASVTIPMEGGGRSINLAVAAGMAAGEVLRQL 162


>gi|257068792|ref|YP_003155047.1| putative rRNA methylase SpoU family [Brachybacterium faecium DSM
           4810]
 gi|256559610|gb|ACU85457.1| predicted rRNA methylase SpoU family [Brachybacterium faecium DSM
           4810]
          Length = 155

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 4/139 (2%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G  +R +        +        E A L ++     +       +++  AL  +  
Sbjct: 13  GNTGNAIRLSAVTGAHLHLIEPLGFDFEDAKLRRAGLDYHDLADVRLHADIDTALAAVPQ 72

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKA 262
              +    SS +    +      +  L+ G E  GL  +       TS   + M    ++
Sbjct: 73  A--RVFAFSSHTDVTFDSIDYTREDVLLFGTEPTGLPEEVMSHPRITSRVRIPMLPARRS 130

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN++NA +VA+Y       
Sbjct: 131 LNLANAVSVAVYEAWRQLG 149


>gi|315655315|ref|ZP_07908215.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490255|gb|EFU79880.1| TrmH family RNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 154

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 6/139 (4%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISNLTDALQKMH 203
            N GA +R A        +        ++    K A      + ++ R  +L D L  + 
Sbjct: 13  GNTGAAIRLAACTGATLHVVEPTVFDLDNDTKLKRAGLDYHDLAHLERHPDLDDCLAHVP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
                    +  +   L Q    D   L+ G E  GL  +  +    TS   + M    +
Sbjct: 73  GN---IYAFTGHTDILLPQIQFQDGDGLMFGPEDTGLPVEVMDDPRVTSRVRIPMLDGRR 129

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN+S +AA+ LY      
Sbjct: 130 SLNLSISAAIGLYYAWGQL 148


>gi|313471790|sp|Q12E50|TRML_POLSJ RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 164

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        +   + ++     E+   +R ++ 
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L        +   +++     +          L+ GAE +GL P  +E+        
Sbjct: 64  QALLDSQRPPAGRLFAMTTHGAGSVYDMRFLPGDWLVFGAETRGLAPDVRESFPMAQRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           + M    ++LN+SN  AV ++    QN FA
Sbjct: 124 VPMQPGQRSLNLSNTVAVTVFEAWRQNGFA 153


>gi|83746863|ref|ZP_00943910.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|207727800|ref|YP_002256194.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|207742203|ref|YP_002258595.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|83726448|gb|EAP73579.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
 gi|206591041|emb|CAQ56653.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206593591|emb|CAQ60518.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 156

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A + ++     E+      ++ 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++    P            + G+E +GL  + +E    +    
Sbjct: 64  EAFLRDAQPDPARMFALTTRGSTPFASLAFQPGDWFVFGSETRGLSEERREWFPPSQRIR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|311113957|ref|YP_003985178.1| SpoU rRNA methylase [Gardnerella vaginalis ATCC 14019]
 gi|310945451|gb|ADP38155.1| SpoU rRNA methylase [Gardnerella vaginalis ATCC 14019]
          Length = 99

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 199 LQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           +++  +   + I L        +E      +  ++ GAEG GL  K  + A  + ++   
Sbjct: 12  IKEQDAKNARVIALDIIPGAVAMETYKFPKRCLMLFGAEGPGLSKKALKMADDVVYISQF 71

Query: 258 GIIKALNVSNAAAVALY-ITQNHFA 281
           G +++LN   AAAV+++     H A
Sbjct: 72  GSVRSLNAGAAAAVSMHAWIAQHAA 96


>gi|170726126|ref|YP_001760152.1| RNA methyltransferase [Shewanella woodyi ATCC 51908]
 gi|169811473|gb|ACA86057.1| RNA methyltransferase, TrmH family, group 1 [Shewanella woodyi ATCC
           51908]
          Length = 254

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 20/162 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL   + P NIG+  R+        +   +     +   +A  A+GA + + + + + +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVEPDGHSVA-LAAGASDILKHAVTVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEGKGLR 241
           + +A+          I  S+ S+      +                 +A++ G E  GL 
Sbjct: 66  VAEAIADCS----LVIATSARSRTLDWPMLEPREAGEKLVSSALTGPVAIVFGRENNGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
            +  +       +       +LN++ A  +  Y  +  H A+
Sbjct: 122 NEELQKCNYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQ 163


>gi|157737324|ref|YP_001490007.1| RNA methylase [Arcobacter butzleri RM4018]
 gi|157699178|gb|ABV67338.1| RNA methylase, SpoU family [Arcobacter butzleri RM4018]
          Length = 154

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 9/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--SAVLAKSASGALEHIPYIRIS 193
           +VL     P N+G I R   A +C  +   K Y   E     + ++       +      
Sbjct: 4   IVLLEPRIPGNVGTIGRLCFALNCK-LHLIKPYGFGEITEKEVRRAGLDYWYDLEVFEYE 62

Query: 194 NLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
           N+ D   K   +   F     ++ +K        N       G E  GL       ++  
Sbjct: 63  NIEDFWSKNPFNDRHFL---ATTKTKNVYFDAKFNVGDYFYFGREDAGLPEDLLSKSSHT 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN++N+ ++  Y     
Sbjct: 120 CITIPMTNDARSLNIANSVSIVAYEALRQ 148


>gi|332084789|gb|EGI89972.1| spoU rRNA Methylase family protein [Shigella boydii 5216-82]
          Length = 160

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           +  L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  SAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|126668572|ref|ZP_01739526.1| rRNA methylase [Marinobacter sp. ELB17]
 gi|126626977|gb|EAZ97620.1| rRNA methylase [Marinobacter sp. ELB17]
          Length = 290

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N ++ +VL   +   NIGA+ R+        +      S  +    A+ A+GA + +   
Sbjct: 15  NDRIRIVLVETSHSGNIGAVARAMKNMGLGNLWMVNPRSFPDETSYAR-AAGASDVLDTA 73

Query: 191 RI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-------------IALILGAE 236
            +  +L +AL          +G S+  +K     +  D+             +AL+ G E
Sbjct: 74  TVVGSLDEALADC----VLVMGTSARGRKVPWPVMPPDQAATAAASHCGQGTVALVFGRE 129

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             GL  +  +      H+       +LN++ A  V  Y  +  + K
Sbjct: 130 NHGLSNEELQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMSYLK 175


>gi|157961311|ref|YP_001501345.1| RNA methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157846311|gb|ABV86810.1| RNA methyltransferase, TrmH family, group 1 [Shewanella pealeana
           ATCC 700345]
          Length = 254

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 20/162 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL   + P NIG+  R+        +   +     +   +A  A+GA + + + I +S+
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKVEPDGHSIA-LAAGASDILKHAITVSS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEGKGLR 241
           + +A+          I  S+ S+      +              N  +A++ G E  GL 
Sbjct: 66  VEEAIADCS----LVIATSARSRTLDWPMLEPREAGEKLVGSALNGPVAIVFGRENNGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
            +  +       +       +LN++ A  +  Y  +  H A+
Sbjct: 122 NEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQ 163


>gi|146078921|ref|XP_001463640.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|321399555|emb|CBZ08742.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 518

 Score = 66.2 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 61/203 (30%), Gaps = 63/203 (31%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYIRIS 193
           +VL  +  P N+G +LR+A     D  +     +      + +++ G      +      
Sbjct: 285 LVLVGLRIPSNVGTLLRAAADMGYDAAVLVS-CADPTQEKVLRASDGTALSPTLRIYETE 343

Query: 194 NLTDALQKMH--------------------------SWGFQTI---------------GL 212
               A   +                           +  F                    
Sbjct: 344 TTEQACVSLLSSIAAQHHLMPFLAVPSQEVESAFEVAKRFHVYNAKSKEAATSQVSGGAA 403

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLR--------PKTQETATSMAHLHMPG-IIKAL 263
           +  S        K     +ILG+E +GLR        P        +  L +   ++ +L
Sbjct: 404 AGHSDGLCAAPTKQLGAMVILGSEAQGLRGLNGRWGVPY------QLVTLPLSNPMVDSL 457

Query: 264 NVSNAAAVALYITQ----NHFAK 282
           NVS A +V +++ +    +HF +
Sbjct: 458 NVSVAGSVLMHLFRPSAASHFTR 480


>gi|148241831|ref|YP_001226988.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850141|emb|CAK27635.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
          Length = 248

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 19/163 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PY 189
            + L +VL   + P N+G++ R    F    +               + A   LE +   
Sbjct: 2   TAHLAVVLVEPSGPLNVGSVARLCANFGVASLRLVAPRCDPTDPQAKQMAVRGLEQLLAC 61

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGA 235
               +L DA+        + +  S   +    + +                  +AL+ G 
Sbjct: 62  ELYPSLEDAVADCR----RVVACSGRVEAKEREHLLPQPALQWLLEPKPGPNHVALVFGR 117

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E  GL       A  +  +       +LN+S+A A+ L   Q 
Sbjct: 118 EDHGLHSSELNLAGKLLRIPTSEAYGSLNLSHAVAICLAEHQR 160


>gi|167623500|ref|YP_001673794.1| RNA methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167353522|gb|ABZ76135.1| RNA methyltransferase, TrmH family, group 1 [Shewanella
           halifaxensis HAW-EB4]
          Length = 251

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 20/162 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL   + P NIG+  R+        +   +     +   +A  A+GA + + + I + +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPKVEPDGHSIA-LAAGASDILKHAITVGS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEGKGLR 241
           + +A+          I  S+ S+      +                 +A++ G E  GL 
Sbjct: 66  VEEAIADCS----LVIATSARSRTLDWPMLEPREAGEKLVGSALTGPVAIVFGRENNGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFAK 282
            +  +       +       +LN++ A  +  Y  +  H A+
Sbjct: 122 NEELQRCDYHVAIPANPEYTSLNLAQAVQIICYEARVAHLAQ 163


>gi|157373044|ref|YP_001481033.1| putative tRNA/rRNA methyltransferase YibK [Serratia proteamaculans
           568]
 gi|157324808|gb|ABV43905.1| RNA methyltransferase, TrmH family, group 2 [Serratia
           proteamaculans 568]
          Length = 157

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P +   L ++     E     R ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIEPMGFPWDDKRLRRAGLDYHEFASIRRHADY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              +        +   T G  + S    +         L+ G E +GL  +  E   A  
Sbjct: 64  AAFIASENPQRLFALTTKGTPAHSAVSYQAGDY-----LLFGPETRGLPAEILEALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y      
Sbjct: 119 KIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148


>gi|42521894|ref|NP_967274.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39574424|emb|CAE77928.1| rRNA methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 160

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +C+  I  K         L ++      H+ + R    
Sbjct: 10  IVLIEPEIPQNTGNIGRTCVGTNCELHIVGKMGFEINDTNLKRAGLDYWPHLTWYRHETF 69

Query: 196 TDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAH 253
            D  + +              +++   +         + G E KGL P+  Q+       
Sbjct: 70  EDWWKHVEDPSRIWLFTT--KTQRTYFEPQYQSGDWFVFGKETKGLDPEFLQKHPQQTVT 127

Query: 254 LHMPG-IIKALNVSNAAAVALYITQNH 279
           + M G   ++LN++ + A+A Y     
Sbjct: 128 IPMIGEGARSLNLATSVAIAAYEGLRQ 154


>gi|309389081|gb|ADO76961.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium
           praevalens DSM 2228]
          Length = 161

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       +    L ++     + +      NL
Sbjct: 3   IVLVEPEIPQNTGNIARTCAVTNSTLHLVRPLGFSTSDKYLKRAGLDYWDKLDVKYYDNL 62

Query: 196 TDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMA 252
           TD   K     F       + +S   LE E  +     + G E  GL     E       
Sbjct: 63  TDFFIKNKDGRFF-YATTKAPNSYSDLEYEADDY---FLFGKETAGLPESLLESNLDKAI 118

Query: 253 HLHMPGIIKALNVSNAAAVALYI--TQNHF 280
            + M   +++LN+SN+ ++ +Y    QN+F
Sbjct: 119 RIPMKDDLRSLNLSNSVSIIIYEALRQNNF 148


>gi|225352565|ref|ZP_03743588.1| hypothetical protein BIFPSEUDO_04189 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156759|gb|EEG70153.1| hypothetical protein BIFPSEUDO_04189 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 265

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 199 LQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           + ++ +   + I L       P+E      +  ++ GAEG GL  K  E A  + ++   
Sbjct: 180 IAELKAA--RVIALDIIPGAVPMETYHFPKRCLMLFGAEGPGLSEKALELADDVVYISQF 237

Query: 258 GIIKALNVSNAAAVALY-ITQNH 279
           G ++++N   AAAV+++     H
Sbjct: 238 GSVRSINAGAAAAVSMHAWIAQH 260



 Score = 36.6 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LD        + +++     NIG+++R+A AF    +               K A 
Sbjct: 23  IKDDLDDHGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHI-----VGPHKWNRKGAL 77

Query: 182 GALEHIPYIRISNLTDALQ--KMHSWG 206
               +       ++ + ++  K+   G
Sbjct: 78  MTELYQHVENHPSIAELVECWKLRIAG 104


>gi|162447356|ref|YP_001620488.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985463|gb|ABX81112.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
          Length = 173

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ V       +        +   L +SA    + + +    + 
Sbjct: 4   VVLCQPEIPQNTGNIMRTCVGSGVHLHLIKPLGFKIDDTKLRRSAVDYYDALNFEIHEDF 63

Query: 196 TDALQK-------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +       +  +G +T         P  Q IK D I L+ G+E  G+        
Sbjct: 64  ESFQNEHPGTYLYLSRYGRKT------HSAPNYQAIKGD-IYLVFGSESYGIDRALLSKN 116

Query: 249 TS-MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                 +     I++LN+SNA A+ +Y       
Sbjct: 117 IENTFRIPTNDKIRSLNLSNAVAITVYEVLRQLG 150


>gi|119774427|ref|YP_927167.1| RNA methyltransferase [Shewanella amazonensis SB2B]
 gi|119766927|gb|ABL99497.1| RNA methyltransferase, TrmH family, group 1 [Shewanella amazonensis
           SB2B]
          Length = 240

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 28/165 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG++ R+        +   +     +   +A +A          R+ +L
Sbjct: 7   VVLVGTSHPGNIGSVARAMKTMGLSNLYLAEPRCEPDGQSVALAAGACDILKNLTRVESL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRP 242
            +A++         IG S+ S+               L  E  +  +A++ G E  GL  
Sbjct: 67  HEAIKDCA----LVIGTSARSRTLDWPLLDPRQAGGKLAAEAVSGPVAIVFGRENHGLYN 122

Query: 243 KTQETATSMAHLH-----MPGIIKALNVSNAAAVALYITQ-NHFA 281
           +  +       +      M     +LN++ A  +  Y T+  H A
Sbjct: 123 EELQACNYHVFIPANPEYM-----SLNLAQAVQIICYETRIAHLA 162


>gi|260494708|ref|ZP_05814838.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33]
 gi|260197870|gb|EEW95387.1| tRNA methylase SpoU [Fusobacterium sp. 3_1_33]
          Length = 150

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L+   + G +    ++ +K+            ++ G E +G+         E   ++
Sbjct: 63  EEFLEA--NKGIRLFYATTKTKQKYCDVKYKKNDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G   +LN+SN+A + LY       
Sbjct: 121 PMIPM-GR--SLNLSNSAVIILYEAYRQLG 147


>gi|167855878|ref|ZP_02478628.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219872061|ref|YP_002476436.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
 gi|167852966|gb|EDS24230.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis 29755]
 gi|219692265|gb|ACL33488.1| putative tRNA/rRNA methyltransferase [Haemophilus parasuis SH0165]
          Length = 159

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E +   +  + 
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDYHEFVDIQKYKDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            D L++      +   L++  +             L+ G E +G+     ++   +    
Sbjct: 64  DDFLERAKPK--RLFALTTKGEPNHSDVQYELGDFLMFGPESRGIPKAILDSLPMSQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y     F 
Sbjct: 122 IPMCKDSRSMNLSNSVAVVVYEAWRQFG 149


>gi|320179947|gb|EFW54889.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii ATCC
           9905]
          Length = 160

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           +  L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  SAFLEAENPQRLFALTTKGTPTHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|289550428|ref|YP_003471332.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           lugdunensis HKU09-01]
 gi|315657919|ref|ZP_07910793.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
 gi|289179960|gb|ADC87205.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496955|gb|EFU85276.1| RNA methyltransferase [Staphylococcus lugdunensis M23590]
          Length = 156

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     + +      ++
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTDTHLHLIKPLGFSTDDKMLKRAGLDYWKFVNITYHESI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
               +      F        +    +   ++D +  I G E  GL    +E  A +   +
Sbjct: 65  ESFFETTSGKYFLLTKFGKKTYSDFDFSDRDDDLYFIFGRETTGLPQWVKEKYADTALRI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+SN AA+ +Y     
Sbjct: 125 PMNSNIRSLNLSNTAALLIYEALRQ 149


>gi|254419003|ref|ZP_05032727.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
 gi|196185180|gb|EDX80156.1| RNA methyltransferase, TrmH family [Brevundimonas sp. BAL3]
          Length = 269

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 19/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++LD      NIGA+ R    F    +                +ASGA   +  +R+  +
Sbjct: 17  VILDKSQMAENIGAVARVMANFGLTDLRLVTPRDGWPQERAWATASGADWVLEGVRVFDS 76

Query: 195 LTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKND-KIALILGAEGKGL 240
           + +A+  ++         ++             ++ + L  +  +  K  L+ G E  GL
Sbjct: 77  VAEAVADLN----TVFATTARPRETRQPVRTPREAGRILYDDTASGLKTGLLFGGERAGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                     +  + +     +LN++ A A+  Y  +
Sbjct: 133 ETTDIALCAGIVTIPIDPKHHSLNLAQAVAINAYEWR 169


>gi|163749697|ref|ZP_02156943.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
           KT99]
 gi|161330510|gb|EDQ01468.1| RNA methyltransferase, TrmH family, group 1 [Shewanella benthica
           KT99]
          Length = 254

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL   + P NIG+  R+        +   +     +   +A  A+GA + + + + + +
Sbjct: 7   VVLVGTSHPGNIGSTARAMKTMGLSTLYLAEPRVQPDGHSIA-LAAGASDILKHAVIVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           + +A+          I  S+ S+                        +A++ G E  GL 
Sbjct: 66  VAEAIADCS----LVIATSARSRTLDWPMLEPREAGEKLVASALEGPVAIVFGRENNGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A  +  Y  +
Sbjct: 122 NEELQKCDYHVAIPANPEYTSLNLAQAVQIICYEAR 157


>gi|226939034|ref|YP_002794105.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226713958|gb|ACO73096.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 154

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N G I+R      C+  +      P E A L ++     E+       
Sbjct: 2   LAVVLFEPEIPPNTGNIIRLCANTGCELHLVEPLGFPLEDARLRRAGLDYHEYAALTVHK 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT-SM 251
           N     Q +   G + + +++ S +P           L+ G E +GL  +     A    
Sbjct: 62  NWAACRQAL--VGRRMLAMTTRSSRPAFALAFAPGDVLVFGPESRGLPAEVLADFADSER 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    +++N+SNA AV ++     
Sbjct: 120 LRLPMLPGQRSMNLSNAVAVTVFEAWRQ 147


>gi|116515392|ref|YP_815944.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
 gi|116075968|gb|ABJ53688.1| TrmH family RNA methyltransferase [Streptococcus pneumoniae D39]
          Length = 167

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K         N+    + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|74318425|ref|YP_316165.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259]
 gi|74057920|gb|AAZ98360.1| RNA methyltransferase CspR [Thiobacillus denitrificans ATCC 25259]
          Length = 154

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A        +            L ++     +       ++ 
Sbjct: 4   IVLYQPEIPPNTGNLIRLAANTGARLHLVEPLGFDLSDKQLVRAGLDYHDMASVHVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
           T   + +   G +   L++   +            L+ G E +GL               
Sbjct: 64  TAVQEAL--AGRRWFALTTRGSRSYASVAFEAGDVLLFGPESRGLPADLLAHFDVDQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SNA +V ++    QN FA
Sbjct: 122 LPMLPGSRSLNLSNAVSVVVFEAWRQNGFA 151


>gi|15902476|ref|NP_358026.1| rRNA methylase [Streptococcus pneumoniae R6]
 gi|15457998|gb|AAK99236.1| rRNA methylase [Streptococcus pneumoniae R6]
          Length = 180

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 77

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K         N+    + G E KGL     +E      
Sbjct: 78  EDFMSQMKG---KLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEKAL 134

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 135 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 166


>gi|315637042|ref|ZP_07892265.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
 gi|315478578|gb|EFU69288.1| TrmH family RNA methyltransferase [Arcobacter butzleri JV22]
          Length = 154

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 9/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--SAVLAKSASGALEHIPYIRIS 193
           +VL     P N+G I R   A +C  +   K Y   E     + ++       +      
Sbjct: 4   IVLLEPRIPGNVGTIGRLCFALNCK-LHLIKPYGFGEITEKEVRRAGLDYWYDLEVFEYE 62

Query: 194 NLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS- 250
           N+ D   K   +   F     ++ +K        N       G E  GL       ++  
Sbjct: 63  NIEDFWSKNPFNDRHFL---ATTKTKNVYFDAKFNVGDYFYFGREDAGLPEDLLSKSSHT 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN++N+ ++  Y     
Sbjct: 120 CITIPMTNEARSLNIANSVSIVAYEALRQ 148


>gi|319795689|ref|YP_004157329.1| RNA methyltransferase, trmh family, group 2 [Variovorax paradoxus
           EPS]
 gi|315598152|gb|ADU39218.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
           EPS]
          Length = 153

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G ++R A    C   +        +  +L ++     E+    R ++ 
Sbjct: 4   IVLVHPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              +    +   +   L++   + +          L+ G+E  GL P  ++         
Sbjct: 64  QALIDAESAAADRMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPPAVRDGFAEPQRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SNA AV ++    QN F+
Sbjct: 124 LPMREGQRSLNLSNAVAVTVFEAWRQNGFS 153


>gi|298502286|ref|YP_003724226.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237881|gb|ADI69012.1| RNA methyltransferase [Streptococcus pneumoniae TCH8431/19A]
          Length = 180

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 77

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 78  EDFISQMKG---KLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 134

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 135 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 166


>gi|148988231|ref|ZP_01819694.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|149025477|ref|ZP_01836413.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|168490616|ref|ZP_02714759.1| CspR [Streptococcus pneumoniae CDC0288-04]
 gi|221231328|ref|YP_002510480.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225854043|ref|YP_002735555.1| CspR [Streptococcus pneumoniae JJA]
 gi|298230513|ref|ZP_06964194.1| CspR [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254233|ref|ZP_06977819.1| CspR [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|147926695|gb|EDK77768.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147929427|gb|EDK80423.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP23-BS72]
 gi|183574827|gb|EDT95355.1| CspR [Streptococcus pneumoniae CDC0288-04]
 gi|220673788|emb|CAR68290.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225722323|gb|ACO18176.1| CspR [Streptococcus pneumoniae JJA]
          Length = 167

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 65  EDFISQMKG---KLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|114776575|ref|ZP_01451620.1| RNA methyltransferase, TrmH family, group 2, putative
           [Mariprofundus ferrooxydans PV-1]
 gi|114553405|gb|EAU55803.1| RNA methyltransferase, TrmH family, group 2, putative
           [Mariprofundus ferrooxydans PV-1]
          Length = 155

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 44/151 (29%), Gaps = 4/151 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G I R          +        +   L ++     +++    
Sbjct: 3   PSLHIVLVEPEIPPNTGNIARLCGCTGAALHLVHPLGFSVDDRSLKRAGLDYWQYLDVTH 62

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
             +       +        G+SS +         +    L+ G E +GL           
Sbjct: 63  HDSWQQLRSSLDGNRNW-YGMSSKASTSFWDVTYSHGDVLVFGPETRGLSAAILAE-IQP 120

Query: 252 AHLHMPGI--IKALNVSNAAAVALYITQNHF 280
             + M     +++LN++    + L+      
Sbjct: 121 LTVPMRADAPVRSLNLATVCGITLFEALRQL 151


>gi|82779099|ref|YP_405448.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae
           Sd197]
 gi|293417071|ref|ZP_06659698.1| RNA methyltransferase [Escherichia coli B185]
 gi|309784414|ref|ZP_07679053.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
 gi|81243247|gb|ABB63957.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|291431102|gb|EFF04095.1| RNA methyltransferase [Escherichia coli B185]
 gi|308927921|gb|EFP73389.1| spoU rRNA Methylase family protein [Shigella dysenteriae 1617]
          Length = 157

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           +  L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  SAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|329115715|ref|ZP_08244432.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parauberis NCFD 2020]
 gi|326906120|gb|EGE53034.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parauberis NCFD 2020]
          Length = 181

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 11/150 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMKRAGLDYWDKLDVRFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPK-TQETATSMA 252
            D L K+          S  ++K       +D  A   I G E KGL  +  +E +    
Sbjct: 79  DDFLGKVDGQIHLI---SKFAEKVYSDHNYDDGQAHYFIFGREDKGLPEEFMREHSEKAL 135

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            + M    +++LN+SN   V +  Y     
Sbjct: 136 RIPMNDEHVRSLNLSNT--VCMIVYEALKQ 163


>gi|300705287|ref|YP_003746890.1| tRNA/rRNA methyltransferase (spou) [Ralstonia solanacearum
           CFBP2957]
 gi|299072951|emb|CBJ44307.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           CFBP2957]
          Length = 175

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 2/154 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+  +   +VL     P N G ++R          +      P E A + ++     E+ 
Sbjct: 15  ALSATMFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYA 74

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                +N    L+       +   L++    P            + G+E +GL  + +E 
Sbjct: 75  TMRVHANWEAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERREW 134

Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              +    L M    ++LN+SN  AV ++     
Sbjct: 135 FPPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168


>gi|182683437|ref|YP_001835184.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14]
 gi|182628771|gb|ACB89719.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae
           CGSP14]
          Length = 180

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 77

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 78  EDFISQMKG---KLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 134

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 135 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 166


>gi|159489640|ref|XP_001702805.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280827|gb|EDP06584.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 153

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 13/153 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G + RS  A      +        ++  L ++     +++     S  
Sbjct: 1   IVLVHPQIPQNTGNVARSCAATGTPLHLVGPLGFELDNKKLKRAGLDYWDNVAVALHSTW 60

Query: 196 TDALQKM-------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                             F   G     +   +         L+ GAE  GL P+ +   
Sbjct: 61  DHFFAAFINLPGPKRLVAFTVAGWDDTVEFTYQSGDW-----LVFGAETSGLPPQVRPVT 115

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNHF 280
              A + +    ++++N++ AA + L+      
Sbjct: 116 VRYARIPIRDTHVRSINLAVAAGIGLFEAVRQL 148


>gi|260903728|ref|ZP_05912050.1| tRNA/rRNA methyltransferase (SpoU) [Brevibacterium linens BL2]
          Length = 154

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A        +          A L ++     +       ++LTD    + 
Sbjct: 13  PGNTGNAIRLAAVTGAHLHLVEPLGFDLSDAKLRRAGLDYHDLAHVTVHASLTDLWNHLG 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR--PKTQETATSMAHLHMPGIIK 261
               + I  ++ + +   +    D   L+ G E  GL       +       + M    +
Sbjct: 73  ER--RVIAFTTHTDQSFAEVDYRDGDVLLFGQESTGLPDSVVDDDHVDLSVRIPMLPSRR 130

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++N+A++A+Y     
Sbjct: 131 SLNLANSASIAIYEAWRQ 148


>gi|15900400|ref|NP_345004.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
 gi|111657132|ref|ZP_01407916.1| hypothetical protein SpneT_02001643 [Streptococcus pneumoniae
           TIGR4]
 gi|148983867|ref|ZP_01817186.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|148993522|ref|ZP_01823013.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|148996883|ref|ZP_01824601.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|149003702|ref|ZP_01828547.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|149012635|ref|ZP_01833632.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|168482732|ref|ZP_02707684.1| CspR [Streptococcus pneumoniae CDC1873-00]
 gi|168485607|ref|ZP_02710115.1| CspR [Streptococcus pneumoniae CDC1087-00]
 gi|168488175|ref|ZP_02712374.1| CspR [Streptococcus pneumoniae SP195]
 gi|168576802|ref|ZP_02722652.1| CspR [Streptococcus pneumoniae MLV-016]
 gi|225856208|ref|YP_002737719.1| CspR [Streptococcus pneumoniae P1031]
 gi|225858329|ref|YP_002739839.1| CspR [Streptococcus pneumoniae 70585]
 gi|237649475|ref|ZP_04523727.1| CspR [Streptococcus pneumoniae CCRI 1974]
 gi|237822188|ref|ZP_04598033.1| CspR [Streptococcus pneumoniae CCRI 1974M2]
 gi|303255626|ref|ZP_07341676.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|303259549|ref|ZP_07345526.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|303262412|ref|ZP_07348355.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264829|ref|ZP_07350746.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS397]
 gi|303266816|ref|ZP_07352696.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS457]
 gi|303269075|ref|ZP_07354856.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS458]
 gi|307067120|ref|YP_003876086.1| putative rRNA methylase [Streptococcus pneumoniae AP200]
 gi|307126705|ref|YP_003878736.1| CspR [Streptococcus pneumoniae 670-6B]
 gi|14971957|gb|AAK74644.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae TIGR4]
 gi|147757458|gb|EDK64497.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|147758264|gb|EDK65265.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|147763440|gb|EDK70377.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP19-BS75]
 gi|147924014|gb|EDK75126.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP3-BS71]
 gi|147927891|gb|EDK78912.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP9-BS68]
 gi|172043851|gb|EDT51897.1| CspR [Streptococcus pneumoniae CDC1873-00]
 gi|183571281|gb|EDT91809.1| CspR [Streptococcus pneumoniae CDC1087-00]
 gi|183572995|gb|EDT93523.1| CspR [Streptococcus pneumoniae SP195]
 gi|183577487|gb|EDT98015.1| CspR [Streptococcus pneumoniae MLV-016]
 gi|225720184|gb|ACO16038.1| CspR [Streptococcus pneumoniae 70585]
 gi|225726295|gb|ACO22147.1| CspR [Streptococcus pneumoniae P1031]
 gi|301793708|emb|CBW36095.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV104]
 gi|301799560|emb|CBW32112.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           OXC141]
 gi|301801379|emb|CBW34065.1| SpoU rRNA methylase family protein [Streptococcus pneumoniae
           INV200]
 gi|302597411|gb|EFL64507.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|302636511|gb|EFL67003.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|302639483|gb|EFL69941.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|302641388|gb|EFL71754.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS458]
 gi|302643654|gb|EFL73921.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS457]
 gi|302645696|gb|EFL75926.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae BS397]
 gi|306408657|gb|ADM84084.1| Predicted rRNA methylase (SpoU class) [Streptococcus pneumoniae
           AP200]
 gi|306483767|gb|ADM90636.1| CspR [Streptococcus pneumoniae 670-6B]
 gi|327390900|gb|EGE89240.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA04375]
 gi|332075333|gb|EGI85803.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332076933|gb|EGI87395.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA17545]
 gi|332202382|gb|EGJ16451.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332203662|gb|EGJ17729.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332204506|gb|EGJ18571.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 167

 Score = 65.8 bits (160), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 65  EDFISQMKG---KLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|77919053|ref|YP_356868.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380]
 gi|77545136|gb|ABA88698.1| putative rRNA methylase [Pelobacter carbinolicus DSM 2380]
          Length = 156

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 6/152 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N    +VL     P N G I R   A      +  K     +   L ++     E I   
Sbjct: 3   NKPFHIVLVEPEIPPNTGNIARLCGATGTILHLVGKLGFSLDDRYLKRAGLDYWEVIDVR 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
           R  +L    +      +     S  +++            ++ G E  GL         A
Sbjct: 63  RWESLQQLEEAFPDGRWW--YTSKKAERSHVGADFQPGDFIVFGKETAGLPADLLARNPA 120

Query: 249 TSMAHLHMPG-IIKALNVSNAAAVALYITQNH 279
                + +    +++LN+S AA + LY     
Sbjct: 121 -HCIRIPIFSPRVRSLNLSTAAGIVLYEALRQ 151


>gi|194431210|ref|ZP_03063503.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
           1012]
 gi|194420665|gb|EDX36741.1| RNA methyltransferase, TrmH family, group 2 [Shigella dysenteriae
           1012]
 gi|332084453|gb|EGI89648.1| spoU rRNA Methylase family protein [Shigella dysenteriae 155-74]
          Length = 160

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           +  L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  SAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|257791075|ref|YP_003181681.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
 gi|257474972|gb|ACV55292.1| tRNA/rRNA methyltransferase (SpoU) [Eggerthella lenta DSM 2243]
          Length = 156

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 13/155 (8%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L +VL     P N G I R+         +            LA++     + +  +
Sbjct: 2   TRPLNIVLVEPEIPQNTGNIARTCACTGARLHLVEPMGFRLTQKNLARAGCDYWDEVDIV 61

Query: 191 RIS-----NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KT 244
           R           A  ++H +       +  + +        +   L+ G E +GL     
Sbjct: 62  RWPCAEAFFEAHAADELHLF-------TGQACRGFGDVAYGEGSFLVFGRESRGLPLGLI 114

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  A     + M   +++LN+SNA AVA Y     
Sbjct: 115 EAHANRCVRIPMREGLRSLNLSNAVAVAAYEALRQ 149


>gi|219125928|ref|XP_002183221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405496|gb|EEC45439.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 119

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 182 GALEHIPYIRIS--NLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEG 237
           GA + I     +  +L + L+   + G+  +G+  +S S    E +  +    L+LG E 
Sbjct: 27  GASDWIEIEECNEKDLANWLRCARNLGYYIVGIEQTSSSVSLCEFQYPDAPTVLLLGKEK 86

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           +G+  +  +       +   GII++LNV  + A
Sbjct: 87  EGIPVEYLQLVDQCVEIPQLGIIRSLNVHVSGA 119


>gi|209527558|ref|ZP_03276059.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
           CS-328]
 gi|209491981|gb|EDZ92335.1| RNA methyltransferase, TrmH family, group 1 [Arthrospira maxima
           CS-328]
          Length = 255

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 8/138 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           N+G+  R         ++    +    S      A  A + +   + + +L  AL     
Sbjct: 25  NVGSCARVMKNMGLTQMVLVNPHCDPMSCEAKTMAVHAQDVLESAQIVDSLPPALIGCQK 84

Query: 205 WGFQTIGLSSDSKKPLEQ------EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
               T        + LE        + +   ALI G E +GL       A  +  +    
Sbjct: 85  A-IATTARDRSFDRTLEHPRTTLPWLLHSPAALIFGPEDRGLSNTELNYAQRIVRIPSSS 143

Query: 259 IIKALNVSNAAAVALYIT 276
             ++LN++ A AV  Y  
Sbjct: 144 AYESLNLAQAVAVCCYEL 161


>gi|56963235|ref|YP_174966.1| rRNA methylase [Bacillus clausii KSM-K16]
 gi|56909478|dbj|BAD64005.1| rRNA methylase [Bacillus clausii KSM-K16]
          Length = 157

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +       +E  +L ++      ++      ++
Sbjct: 5   IVLYQPEIPANTGNIARTCAGTNATLHLIRPLGFSTEDRMLKRAGCDYWPNVTIHYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLR-PKTQETATSM 251
            +  +      F    + +   KP       +       + G E  GL    T+      
Sbjct: 65  EELFETYPEGLF--YYIETVGSKPYTDFDFRNTEVDHFFVFGKETTGLPNHLTEANTERC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             +    +I++LN+SN AA+ LY     
Sbjct: 123 LRIPQTDLIRSLNLSNTAAIVLYEALRQ 150


>gi|319892892|ref|YP_004149767.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162588|gb|ADV06131.1| tRNA (cytosine34-2'-O-)-methyltransferase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464075|gb|ADX76228.1| RNA methyltransferase, TrmH family, group 2 [Staphylococcus
           pseudintermedius ED99]
          Length = 156

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++  +L ++     +++      N+
Sbjct: 5   VVLYQPEIPANTGNIARTCAATDTHLHLIRPLGFSTDDKMLRRAGLDYWKYVSITYYDNI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA-HL 254
               ++     F      S +    +    +     I G E  GL    ++   + A  +
Sbjct: 65  ESFFEQTEGQYFLLTKFGSKNHTSQDFSDVDQNYYFIFGKETTGLPDWVKDKYDNTALRI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   ++ALN+SN AA+ +Y     
Sbjct: 125 PMNENVRALNLSNTAAILVYEALRQ 149


>gi|17232034|ref|NP_488582.1| hypothetical protein alr4542 [Nostoc sp. PCC 7120]
 gi|17133678|dbj|BAB76241.1| alr4542 [Nostoc sp. PCC 7120]
          Length = 243

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +VL   + P N+GAI R    F    ++         S    + A  A E +   I +  
Sbjct: 8   IVLVEPSGPLNVGAIARVMKNFGLAHLVLVSPQCDPLSEDAMRMAVHAKEILESAITVPT 67

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGKGLRP 242
           L  AL        + I  S                 P   E      ALI G E +GL  
Sbjct: 68  LPAALHGC----VRAIATSGRDNDWGLTLETPRIALPWLLEETGQPSALIFGREDRGLSN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +    A     +       +LN+++A  +  Y    + 
Sbjct: 124 EELIYAQRFIRIPTSPDYLSLNLASAVGICCYELAQNL 161


>gi|320103920|ref|YP_004179511.1| tRNA/rRNA methyltransferase SpoU [Isosphaera pallida ATCC 43644]
 gi|319751202|gb|ADV62962.1| tRNA/rRNA methyltransferase (SpoU) [Isosphaera pallida ATCC 43644]
          Length = 178

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +   +L +VL H     N GAI R+ V       +            L ++      H+ 
Sbjct: 1   MATDRLNIVLVHPEIAPNTGAIGRTCVGVGATLWLVRPMGFQINDRHLKRAGLDYWAHLD 60

Query: 189 YIRISNLTDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR---PKT 244
           +  + NL + +++    G+ +    S+   +P          ALI G+E +GL       
Sbjct: 61  WRIVENLEEIVERF---GWDRLWFFSARGGRPYASLNYQPGDALIFGSESRGLPLEWRAR 117

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            E A     + M    + LN+SNA AVA +     F
Sbjct: 118 AEAAERAVSIPMRPEARGLNLSNAVAVAAFEAIRQF 153


>gi|169824492|ref|YP_001692103.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302380508|ref|ZP_07268973.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233775|ref|ZP_07320429.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           BVS033A4]
 gi|167831297|dbj|BAG08213.1| rRNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|302311451|gb|EFK93467.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495209|gb|EFL54961.1| RNA methyltransferase, TrmH family, group 2 [Finegoldia magna
           BVS033A4]
          Length = 155

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 3/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +  +L +S     + +  +   ++
Sbjct: 4   IVLLEPEKPSNTGNIGRTCVLTNTRLHLVRPFSFRLDDKLLKRSGMDYWDKVDLVIHDDI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
            + L+ +     +   + + +     +    D   L+ G E  G+      +       +
Sbjct: 64  DEFLEYIKGND-RVFYVETFATHYYHEVEYKDGDYLVFGKESSGIDKDLVSKHKEHSIKI 122

Query: 255 HMPGIIK-ALNVSNAAAVALYITQNHFA 281
            M   I  +LN++N+  + L+       
Sbjct: 123 PMNMEIDRSLNLANSCNIVLFEALRQIN 150


>gi|94309202|ref|YP_582412.1| RNA methyltransferase TrmH, group 2 [Cupriavidus metallidurans
           CH34]
 gi|93353054|gb|ABF07143.1| putative rRNA methylase [Cupriavidus metallidurans CH34]
          Length = 156

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVHESW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              +        +   L++    P  Q         + G+E +GL P+ +E   +     
Sbjct: 64  DALMAAEQPDPTRMFALTTHGSTPFGQVSFAPGDWFVFGSETRGLAPERREWFPSAQRIR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV ++    QN FA
Sbjct: 124 LPMRPNNRSLNLSNTVAVVVFEAWRQNGFA 153


>gi|126465680|ref|YP_001040789.1| RNA methyltransferase [Staphylothermus marinus F1]
 gi|126014503|gb|ABN69881.1| RNA methyltransferase, TrmH family, group 1 [Staphylothermus
           marinus F1]
          Length = 231

 Score = 65.8 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL  +    N+G I R+ V F  D +   K  +  E     + A+ A +++   I + +
Sbjct: 5   VVLVGIEGSVNLGFIARTCVNFGVDELYLVKPAADLE--EALRYAAKASDYLKKAIIVDD 62

Query: 195 LTDALQKMHSWGFQTIGLSSDS---------KKPLEQEI-----KNDKIALILGAEGKGL 240
           L DA++ +       +  ++             PL   +     + +++A++ G E  GL
Sbjct: 63  LVDAIKDVD----LVVATTAKGYSVGDVVRQAVPLRDFVEMVKGRVNRLAILFGRESTGL 118

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             K    A  +  +        LN+S A AV L+   N
Sbjct: 119 TRKELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWN 156


>gi|78356021|ref|YP_387470.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218426|gb|ABB37775.1| RNA methyltransferase, TrmH family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 253

 Score = 65.4 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +VL     P NIG + R+      +   ++  +R++P +S  LA       + +P +   
Sbjct: 8   VVLVEPRFPENIGMVARACANMGVNELVVVAPERWNPEKSVPLATP-----KGVPVLESV 62

Query: 194 NLTDALQKM------------HSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKG 239
              D L                + G++   LS ++  P+  ++     ++A++ G E +G
Sbjct: 63  RHEDTLAAALAPYTLVLGTTARTGGWRRQILSPETAAPVVQQEVAAGGRVAIVFGREDRG 122

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           L  +  E  + +  +       +LN++ A  + LY 
Sbjct: 123 LTNEETEVCSRLVTIP-TSEASSLNLAQAVLILLYE 157


>gi|54114343|gb|AAV29805.1| NT02FT1078 [synthetic construct]
          Length = 155

 Score = 65.4 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   L ++     E        N  +  Q+  
Sbjct: 12  PPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIYKNFAEFYQQNK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
               Q    ++ +K+   +   +    L+ G E +GL     E        + M    ++
Sbjct: 72  DK--QIWACTTKAKQYYHKVDFSCDDILLFGPETRGLPADVLELLKQTQLKIPMHKNSRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 130 LNLSNSVAVILYGALNNIG 148


>gi|73540016|ref|YP_294536.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134]
 gi|72117429|gb|AAZ59692.1| RNA methyltransferase TrmH, group 2 [Ralstonia eutropha JMP134]
          Length = 156

 Score = 65.4 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVHDSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +   L++    P  Q         + G+E +GL P+ +E+   +    
Sbjct: 64  DALMASEQPDPSRMFALTTHGSTPFGQVSFQPGDWFVFGSETRGLAPERRESFPPSQRIR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV ++    QN FA
Sbjct: 124 LPMRPNNRSLNLSNTVAVVVFEAWRQNGFA 153


>gi|56707605|ref|YP_169501.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670076|ref|YP_666633.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456676|ref|ZP_03665149.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370123|ref|ZP_04986129.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874426|ref|ZP_05247136.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604097|emb|CAG45096.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320409|emb|CAL08479.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568367|gb|EDN34021.1| RNA methyltransferase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840425|gb|EET18861.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158763|gb|ADA78154.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 155

 Score = 65.4 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   L ++     E        N  +  Q+  
Sbjct: 12  PPNTGNIIRLCANVGAKLHLIEPFGFKLEDKQLRRAGLDYHEFADLKIYKNFAEFYQQNK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
               Q    ++ +K+   +   +    L+ G E +GL     E        + M    ++
Sbjct: 72  DK--QIWACTTKAKQYYHKVDFSCDDILLFGPETRGLPADVLELLKQTQLKIPMHKNSRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 130 LNLSNSVAVILYGALNNIG 148


>gi|114567616|ref|YP_754770.1| rRNA methylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338551|gb|ABI69399.1| rRNA methylase (SpoU class) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 152

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRISN 194
           +VL     P N G I R+  A +   +   K    S +    K A     + +      +
Sbjct: 3   IVLVEPEIPQNTGNIARTC-ALTKTALHLVKPLGFSLADRFLKRAGLDYWDKVEVQLWES 61

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAH 253
             D L+   + G      ++ + +   Q        L+ G E  GL     ++   +   
Sbjct: 62  FGDLLEA--NPGAAFYLATTRAGQAYHQVSYPQDSWLVFGRESSGLPISILKSFPDTQIR 119

Query: 254 LHMP--GIIKALNVSNAAAVALYITQNH 279
           + M   G   +LN+SN+ A+ LY     
Sbjct: 120 IPMQDIGR--SLNLSNSVAIILYEALRQ 145


>gi|256021387|ref|ZP_05435252.1| putative tRNA/rRNA methyltransferase YibK [Shigella sp. D9]
 gi|332282622|ref|ZP_08395035.1| YibK [Shigella sp. D9]
 gi|332104974|gb|EGJ08320.1| YibK [Shigella sp. D9]
          Length = 157

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDF 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  RAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|157163090|ref|YP_001460408.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli HS]
 gi|170018161|ref|YP_001723115.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ATCC
           8739]
 gi|188491907|ref|ZP_02999177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           53638]
 gi|194435762|ref|ZP_03067865.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           101-1]
 gi|253771551|ref|YP_003034382.1| tRNA/rRNA methyltransferase YibK [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163536|ref|YP_003046644.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli B str.
           REL606]
 gi|293463933|ref|ZP_06664347.1| RNA methyltransferase [Escherichia coli B088]
 gi|300822379|ref|ZP_07102519.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           119-7]
 gi|300927961|ref|ZP_07143520.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           187-1]
 gi|312972108|ref|ZP_07786282.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
 gi|331670450|ref|ZP_08371289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA271]
 gi|331679700|ref|ZP_08380370.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
 gi|157068770|gb|ABV08025.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli HS]
 gi|169753089|gb|ACA75788.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli ATCC
           8739]
 gi|188487106|gb|EDU62209.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           53638]
 gi|194425305|gb|EDX41289.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           101-1]
 gi|242379130|emb|CAQ33932.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
 gi|253322595|gb|ACT27197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975437|gb|ACT41108.1| predicted rRNA methylase [Escherichia coli B str. REL606]
 gi|253979593|gb|ACT45263.1| predicted rRNA methylase [Escherichia coli BL21(DE3)]
 gi|291321565|gb|EFE61001.1| RNA methyltransferase [Escherichia coli B088]
 gi|300464053|gb|EFK27546.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           187-1]
 gi|300525026|gb|EFK46095.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           119-7]
 gi|310334485|gb|EFQ00690.1| spoU rRNA Methylase family protein [Escherichia coli 1827-70]
 gi|320201364|gb|EFW75945.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           EC4100B]
 gi|323934848|gb|EGB31230.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323939632|gb|EGB35838.1| RNA methyltransferase [Escherichia coli E482]
 gi|323959857|gb|EGB55505.1| RNA methyltransferase [Escherichia coli H489]
 gi|323971251|gb|EGB66496.1| RNA methyltransferase [Escherichia coli TA007]
 gi|331062512|gb|EGI34432.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA271]
 gi|331072872|gb|EGI44197.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H591]
          Length = 157

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDF 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  RAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|89900467|ref|YP_522938.1| tRNA/rRNA methyltransferase SpoU [Rhodoferax ferrireducens T118]
 gi|89345204|gb|ABD69407.1| tRNA/rRNA methyltransferase (SpoU) [Rhodoferax ferrireducens T118]
          Length = 161

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R +    C   +        +   + ++     E+    R ++ 
Sbjct: 4   IVLVEPEIPPNTGNIIRLSANTGCALHLIEPLGFSMDDKHMRRAGLDYHEYATVKRHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
              L        +   L++ + + + +        L+ G+E KGL    +++ T      
Sbjct: 64  QAFLAGEQPAPERMFALTTRAGRSVYEAQFAPGDWLVFGSETKGLSDAVRQSFTLAQSLK 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SNA AV ++      A
Sbjct: 124 LPMIEGQRSLNLSNAVAVTVFEAWRQNA 151


>gi|16802975|ref|NP_464460.1| hypothetical protein lmo0935 [Listeria monocytogenes EGD-e]
 gi|47096222|ref|ZP_00233820.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224499473|ref|ZP_03667822.1| hypothetical protein LmonF1_07132 [Listeria monocytogenes Finland
           1988]
 gi|224503097|ref|ZP_03671404.1| hypothetical protein LmonFR_11343 [Listeria monocytogenes FSL
           R2-561]
 gi|254827880|ref|ZP_05232567.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254832098|ref|ZP_05236753.1| hypothetical protein Lmon1_12159 [Listeria monocytogenes 10403S]
 gi|254898892|ref|ZP_05258816.1| hypothetical protein LmonJ_03725 [Listeria monocytogenes J0161]
 gi|254911620|ref|ZP_05261632.1| RNA methyltransferase [Listeria monocytogenes J2818]
 gi|254935946|ref|ZP_05267643.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|255027352|ref|ZP_05299338.1| hypothetical protein LmonocytFSL_15203 [Listeria monocytogenes FSL
           J2-003]
 gi|16410337|emb|CAC99013.1| lmo0935 [Listeria monocytogenes EGD-e]
 gi|47015367|gb|EAL06302.1| RNA methyltransferase, TrmH family, group 2 [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258600261|gb|EEW13586.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258608534|gb|EEW21142.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|293589567|gb|EFF97901.1| RNA methyltransferase [Listeria monocytogenes J2818]
          Length = 169

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      +L
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ----ETA 248
            +  +   + G +   ++   +        +D       + G E  GL         E  
Sbjct: 65  DEFFE--KNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGLPDALLQENEENC 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I++LN+SN AA+  Y     
Sbjct: 123 ---LRIPMTDHIRSLNLSNTAAILAYEALRQ 150


>gi|312797395|ref|YP_004030317.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312169170|emb|CBW76173.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 200

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P + A + ++     E+       + 
Sbjct: 48  VVLVEPEIPPNTGNIIRLCANTGATLHLVEPLGFPLDDAKMRRAGLDYHEYAQMRVHQDW 107

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
           +  L        +    ++                 + GAE +GL     +         
Sbjct: 108 STLLATQQPDPARMFAFTTRGSSMFGDRAFQPGDWFVFGAETRGLCDTVLQHFAVDQRVR 167

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 168 LPMRAGNRSLNLSNTVAVVVFEAWRQ 193


>gi|255024638|ref|ZP_05296624.1| hypothetical protein LmonocyFSL_16396 [Listeria monocytogenes FSL
           J1-208]
          Length = 160

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      +L
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ----ETA 248
            +  +   + G +   ++   +        +D       + G E  GL         E  
Sbjct: 65  DEFFE--KNEGGEFYYITKFGRHVYSDIDYSDSNKDYFFVFGKETTGLPDSLLQENEENC 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I++LN+SN AA+  Y     
Sbjct: 123 ---LRIPMTDHIRSLNLSNTAAILAYEALRQ 150


>gi|119504920|ref|ZP_01626997.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459206|gb|EAW40304.1| putative RNA-methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 158

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P N G+I+R          +        +   L ++     E    ++ 
Sbjct: 5   PLHIVLYEPEIPGNTGSIIRLCANTGAALHVIKPLGFEMDDKRLRRAGLDYHEFASVMQW 64

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +L    ++      + + + +           ++  AL+ G+E KGL      T     
Sbjct: 65  ESLAHYREQNSDR--RLVAVETCGVARHSNFSFSNSDALLFGSETKGLPEAILVTLSRDH 122

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  L M    ++LN++NA +V +Y     
Sbjct: 123 IVKLPMLPNSRSLNLANAVSVVVYEAWRQ 151


>gi|307543985|ref|YP_003896464.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
           2581]
 gi|307216009|emb|CBV41279.1| RNA methyltransferase, TrmH family, group 1 [Halomonas elongata DSM
           2581]
          Length = 247

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 20/158 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL   + P NIG   R+      + +          +A     ASGA   +   R + N
Sbjct: 7   IVLIGTSHPGNIGGTARAMHNMGLEDLALVAPRCEPITADTVSRASGADALVHNARTVDN 66

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK---------------PLEQEIKNDKIALILGAEGKG 239
           L DA+          +G S+ S+                P E      ++AL+ G E  G
Sbjct: 67  LEDAVGDCT----LVVGASARSRNLPWPMVTPRELGERLPTELASPQGRVALVFGREDSG 122

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L     +   +  H+       +LN++ A  V  Y  +
Sbjct: 123 LTNTEMQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECR 160


>gi|298712565|emb|CBJ33268.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 569

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +AL+LG E  G+  +       +  + + G+  +LNV++A  V LY     ++
Sbjct: 507 VALVLGNEVTGVDERVLGLCDLVVEVPVFGLKNSLNVASAGTVVLYEVLRQWS 559



 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 39/228 (17%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNN-------PSRKIFQLLATKNA 77
           R     + + +     R  ++ +  F  G     AAL +         +++ +++    A
Sbjct: 243 RQEALDEALVTVGVDPRELTEADEFF--GT----AALKSYNTFVRPRPKQLAKVMQEPVA 296

Query: 78  LARLDWDANLPHPFPVKTVPPQTI---DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
            A L   + +                       EA  +GL                   +
Sbjct: 297 RAALRTASQVAFLVRRHRADRAEYLRNKDASMTEAERRGLVAH---------------PV 341

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES---AVLAKSASGALEHIPYIR 191
            +V D+V   +N+G+I RSA       +IT              + K+  G+++ + +  
Sbjct: 342 ALVCDNVRSAYNVGSIFRSADTARVAEVITCGFTPHPGGHGEEKVRKTGFGSVDAVAHRH 401

Query: 192 ISNLTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGK 238
             + ++A++ + + G     L ++D+   L         AL    EGK
Sbjct: 402 FEDPSEAVRSLKAAGAFVCALETTDNASSLFDVRFPLPPAL----EGK 445


>gi|262276838|ref|ZP_06054631.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium
           HIMB114]
 gi|262223941|gb|EEY74400.1| RNA methyltransferase, TrmH family, group 2 [alpha proteobacterium
           HIMB114]
          Length = 147

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N  AI+R+         I            L +     L+        +    ++   
Sbjct: 12  PQNTAAIIRTCACLGLKLEIIKPAGFVLNEKKLDRIYMDYLKDCEIFYHESFDTFVKSKK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                     + +        KND   L+ G+E KG+  +   T  +  ++ +    ++L
Sbjct: 72  QKRIILFTTKTTNNYTKFIFKKNDT--LLFGSESKGVSEEVHGTIKNKLNIPIKNNTRSL 129

Query: 264 NVSNAAAVALYITQNHFA 281
           N++ + A+A       F 
Sbjct: 130 NLATSVAIASSEALRQFG 147


>gi|298292455|ref|YP_003694394.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
 gi|313471749|sp|D7A3L6|TRML_STAND RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|296928966|gb|ADH89775.1| tRNA/rRNA methyltransferase (SpoU) [Starkeya novella DSM 506]
          Length = 158

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 3/141 (2%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G + R+      +  I      P   A   ++    L+     R ++     +   +
Sbjct: 14  QNAGTLARAVACLGLELHIVEPAGFPVGDAGFRRAGMDYLDRAVIRRHASFKAFEEWRRA 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + +  ++            +   ++LG E  G+     E+A +   + +    ++LN
Sbjct: 74  EGRRLVLATTRGAVAHVDFAFTETDVVLLGRESAGVPEAVHESADARIVIPLNEGARSLN 133

Query: 265 VSNAAAVALYITQNH---FAK 282
           V+ A A+ L         FA+
Sbjct: 134 VALAGAMILGEALRQTGGFAR 154


>gi|150026034|ref|YP_001296860.1| rRNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149772575|emb|CAL44058.1| Probable rRNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 151

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R  V       +            L +S      H+ + +  N 
Sbjct: 4   IVLVEPEIPNNTGNIGRLCVGTGNRLHLIHPFGFEINDKNLKRSGLDYWVHLDWFQYKNT 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + + ++     +   +SS ++    +    +   L+ G E  GL  +      +   + 
Sbjct: 64  QEWIDQIPDKS-RVFMMSSHAQTSYYEANFQEGDWLVFGKESVGLSKEILNLFENHLTIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           M   I++ N++N+ A  +   +   A
Sbjct: 123 MSDKIRSYNIANSVAFVVGEARRQIA 148


>gi|332529994|ref|ZP_08405944.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis
           ATCC 19624]
 gi|332040467|gb|EGI76843.1| RNA methyltransferase, TrmH family, group 2 [Hylemonella gracilis
           ATCC 19624]
          Length = 154

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G ++R A    C   +        E  +L ++     E+    R ++ 
Sbjct: 4   IVLVHPEIPPNTGNVIRLAANTGCALHLIEPLGFAMEDRLLKRAGLDYHEYAEVRRHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L +      +   L++     +          L+ GAE  GL P  +          
Sbjct: 64  EAFLSEERPNPERMFALTTRGTGVVHDSAFLPGDWLVFGAETSGLPPGVRAQFAPERQLK 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SNA AV ++    QN FA
Sbjct: 124 LPMRAGQRSLNLSNAVAVTVFEAWRQNGFA 153


>gi|256025663|ref|ZP_05439528.1| putative tRNA/rRNA methyltransferase YibK [Escherichia sp. 4_1_40B]
          Length = 157

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPIGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  RAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|254427839|ref|ZP_05041546.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
 gi|196194008|gb|EDX88967.1| RNA methyltransferase, TrmH family, group 2 [Alcanivorax sp. DG881]
          Length = 156

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R A        +        E   L ++     E        +     + + 
Sbjct: 12  PPNTGNIIRLAANTGAQLHLIEPLGFSLEEKKLRRAGLDYSEFAALQVHRDFAAFQESI- 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
             G +   +++   +P  +    D   L+ G E +GL     ++   T    L M    +
Sbjct: 71  -AGQRLFAMTTKGSRPHSEACFQDGDVLLFGPETRGLPDPILKSLPPTQRLRLPMVADSR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SNA AV LY       
Sbjct: 130 SLNLSNAVAVTLYEAWRQLG 149


>gi|332798848|ref|YP_004460347.1| TrmH family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332696583|gb|AEE91040.1| RNA methyltransferase, TrmH family, group 2 [Tepidanaerobacter sp.
           Re1]
          Length = 167

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +        +   L ++       +      + 
Sbjct: 11  VVLLEPEIPQNTGNIARTCAATDSVLHLIGPLGFSLDDKYLKRAGLDYWSLLDVRYYGSY 70

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
            +   +  + G     L++ +K+            L+ G E  GL  P  +        +
Sbjct: 71  LEF--EEKNPGGCKYFLTTKAKQCYADVSYEPDCYLVFGKETAGLPVPLLKANRERCIRI 128

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M    ++LN+SN+ A+ +Y       
Sbjct: 129 PMTDEARSLNLSNSVAIVVYEALRQMG 155


>gi|34762434|ref|ZP_00143434.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887902|gb|EAA24970.1| 23S rRNA methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 150

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L+   + G +    ++ +K+        +   ++ G E +G+         E     
Sbjct: 63  EEFLET--NKGIRLFYATTKTKQKYCDVKYEENDYIMFGPESRGIPEDILNKNPERC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M  + ++LN+SN+A + LY       
Sbjct: 118 VTIPMIPMGRSLNLSNSAVIILYEAYRQLG 147


>gi|320532683|ref|ZP_08033477.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135101|gb|EFW27255.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 152

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R +               P      AK     L++             + + 
Sbjct: 12  PGNTGAAIRLSANTGA----MLHLVDPLFDMDDAKLRRAGLDYHDLASTRVHATWQKCLE 67

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +    +S +++   Q   +   AL+ G E  GL  +  +    ++   + M    +
Sbjct: 68  QIPGRIFAFTSHTERLYTQVDWHGDDALLFGPEPTGLPQEILDHPRVSAHLRIPMVEGNR 127

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++N+AA+ LY    
Sbjct: 128 SLNLANSAAIGLYEAWR 144


>gi|223040777|ref|ZP_03611044.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
 gi|255322371|ref|ZP_05363517.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
 gi|222877967|gb|EEF13081.1| RNA methyltransferase, TrmH family [Campylobacter rectus RM3267]
 gi|255300744|gb|EET80015.1| RNA methyltransferase, TrmH family [Campylobacter showae RM3277]
          Length = 159

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 10/153 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R  V  +    I            + ++       +  +   +L
Sbjct: 4   IVLVHPQIPQNTGSIGRMCVNANLKLHIIKPTVFDISEKAVRRAGLDYWARLNPVIWESL 63

Query: 196 TDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + L    +     F     +   K   E E K     L  G E  GL  +  E   A +
Sbjct: 64  DEFLHANAQFEDRFF--YATTKAHKFYFEAEFKKGDF-LFFGGESTGLPMELMERNFANA 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT-QNHFAK 282
              + M    ++LN++ +A +  Y   + +FA+
Sbjct: 121 -IKIPMGEHGRSLNLATSAGIIAYEAIRQNFAQ 152


>gi|227832337|ref|YP_002834044.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453353|gb|ACP32106.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 158

 Score = 65.4 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L +V D+   P N G  +R+A        +        E   L ++     +      
Sbjct: 4   SSLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFEDKHLKRAGLDYHDLADLKI 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
             +    ++ +     +    ++ ++K        +   L+ G E  GL  +       T
Sbjct: 64  HKDFDACMEALPDA--RVFAFTTHTEKWFTDVEYQEGDVLLFGTEPTGLPEEHAFHPRVT 121

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M    +++N+SNAA+ A+Y       
Sbjct: 122 ERVRIPMMPARRSMNLSNAASTAVYEAWRQLG 153


>gi|332358324|gb|EGJ36150.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK355]
          Length = 167

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 62/160 (38%), Gaps = 25/160 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-----LILGAEGKGLRPKTQ----E 246
            D +++M     +   +S  ++K   +E      A      + G E KGL  +      E
Sbjct: 65  EDFMEQMDG---RLYLISKFAEKVYSEENFA---AESSHYFMFGREDKGLPEEFMRRYPE 118

Query: 247 TATSMAHLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            A     + M    +++LNVSNA  V +  Y    Q +FA
Sbjct: 119 KA---LRIPMNDQHVRSLNVSNA--VCMIVYEALRQQNFA 153


>gi|23335642|ref|ZP_00120876.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
          Length = 231

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 49/190 (25%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF    +     +  +    L     
Sbjct: 23  IKADLDARGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHIVGPHKWNRKGALMTELY 82

Query: 182 GALEHIP----------------------------------------------YIRISNL 195
             +EH P                                                 I   
Sbjct: 83  QHVEHHPSIAELVESWHHRIAGEIAYERAKAGAAAIHAHDVAVDGDNKHLHELLAEIDAC 142

Query: 196 TDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
              ++++ +   + I L       P+E      +  L+ GAEG GL  K    A  + ++
Sbjct: 143 DARIKELQAA--RVIALDIIPGAVPMEAYAFPKRCLLLFGAEGPGLSEKALALADDVVYI 200

Query: 255 HMPGIIKALN 264
              G ++++N
Sbjct: 201 SQFGSVRSIN 210


>gi|330721835|gb|EGG99807.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC2047]
          Length = 154

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R A    C   I        +   L ++     E        +  +      
Sbjct: 12  PPNTGNIIRLAANTGCQLHIIKPMAFEFDDKRLRRAGLDYHEWANVQFYDSFAECCDNPA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
               +   L++ +     +       AL+ G E +GL    +++        + M    +
Sbjct: 72  IE--RVFALTTKATCSYSETSYQAGDALMFGPESRGLPANIRDSLPEQQRLRIPMLPDSR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN+SN+ AV ++       
Sbjct: 130 SLNLSNSVAVVVFEAWRQLG 149


>gi|124808939|ref|XP_001348447.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium
            falciparum 3D7]
 gi|23497341|gb|AAN36886.1| rRNA (adenosine-2'-O-)-methyltransferase, putative [Plasmodium
            falciparum 3D7]
          Length = 2779

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 23/159 (14%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             L+++   ++   N+  + R+   F+   ++        +     K +S A + +     
Sbjct: 2630 DLIVIASLIDKLPNLAGLCRTCEIFNVKKLLIDNINIIKDYQ-FQKISSTANKWMN---- 2684

Query: 193  SNLTDALQKMHSWGFQTI-----------GLS-SDSKKPLEQEIKNDKIALILGAEGKGL 240
                  ++++                   GL  + + + L   +   K  LILG E +GL
Sbjct: 2685 ------IKELKKSNIINYIIKKKKKYSIIGLEQTHNSQKLNHFVFPKKCILILGDEKEGL 2738

Query: 241  RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                         +   GII++LNV  +AA+ +Y     
Sbjct: 2739 PSSILMFLHHCIEIPGQGIIRSLNVHVSAAITIYEYFKQ 2777


>gi|17545077|ref|NP_518479.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17427367|emb|CAD13886.1| putative trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 156

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A + ++     E+      ++ 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA----TSM 251
              L+       +   L++    P            + G+E +GL  +    A    +  
Sbjct: 64  DAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEE--RRAGFPPSQR 121

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             L M    ++LN+SN  AV ++    QN FA
Sbjct: 122 IRLPMRPDNRSLNLSNTVAVVVFEAWRQNGFA 153


>gi|257462965|ref|ZP_05627369.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|317060582|ref|ZP_07925067.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
 gi|313686258|gb|EFS23093.1| 23S rRNA methyltransferase [Fusobacterium sp. D12]
          Length = 152

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + +S       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTHLHLIKPLGFSLDEKQIRRSGLDYWHSVKLTIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
            + L        +    ++ +K+        +   ++ G E +G+     +         
Sbjct: 63  EEFLAS--DPEMRLFYATTKTKQKYSDVRYQENDYIMFGPESRGIPEDILKQ-DPERCIT 119

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M  + ++LN+SN+AA+ LY       
Sbjct: 120 IPMIPMGRSLNLSNSAAIILYEALRQVN 147


>gi|311111742|ref|YP_003982964.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310943236|gb|ADP39530.1| TrmH family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 162

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +        E A L ++     +         L DA + M 
Sbjct: 19  PGNTGNAIRLAAVTGAELHLVEPLGFNFEDAHLRRAGLDYHDLAVVTVHKTLQDAWKAMM 78

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAHLHM-PGII 260
               +    ++ +          D   L+ G E  GL    Q  E  T    + M PG  
Sbjct: 79  PA--RVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADVQQDEHITERVKIPMIPGR- 135

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN++N+A++A++     
Sbjct: 136 RSLNLANSASIAIFEAWRQ 154


>gi|307704142|ref|ZP_07641067.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
 gi|307622300|gb|EFO01312.1| spoU rRNA Methylase family protein [Streptococcus mitis SK597]
          Length = 167

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K         ++    + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAEKVYSDVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|307708135|ref|ZP_07644602.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis
           NCTC 12261]
 gi|307615581|gb|EFN94787.1| rna methyltransferase, trmh family, group 2 [Streptococcus mitis
           NCTC 12261]
          Length = 167

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K         ++    + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAEKVYSDVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|257452148|ref|ZP_05617447.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|257466059|ref|ZP_05630370.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917214|ref|ZP_07913454.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317058693|ref|ZP_07923178.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313684369|gb|EFS21204.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313691089|gb|EFS27924.1| 23S rRNA methyltransferase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 152

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + +S       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTHLHLIKPLGFSLDEKQIKRSGLDYWHSVQLTVWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L        +    ++ +K+            ++ G E +G+  +      E   ++
Sbjct: 63  EEFLAS--DPNMRLFYATTKTKQRYSDVSYKANDYIMFGPESRGIPEEILKKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G   +LN+SN+AA+ LY     
Sbjct: 121 PMIPM-GR--SLNLSNSAAIILYEALRQ 145


>gi|298346770|ref|YP_003719457.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304389526|ref|ZP_07371489.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656772|ref|ZP_07909659.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236831|gb|ADI67963.1| SpoU family rRNA methyltransferase [Mobiluncus curtisii ATCC 43063]
 gi|304327336|gb|EFL94571.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492727|gb|EFU82331.1| TrmH family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 154

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISNLTDALQKMH 203
            N GA +R A        +        ++    K A      + ++ R  +L D L   H
Sbjct: 13  GNTGAAIRLAACTGATLHVVEPTVFDLDNDTKLKRAGLDYHDLAHLERHPDLDDCLA--H 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
             G +    +  +   L Q    D   L+ G E  GL  +  +    TS   + M    +
Sbjct: 71  VPG-KLYAFTGHTDILLPQIQFQDGDGLMFGPEDTGLPVEVMDDPRVTSRVRIPMLDGRR 129

Query: 262 ALNVSNAAAVALYITQNHF 280
           +LN+S +AA+ LY      
Sbjct: 130 SLNLSISAAIGLYYAWGQL 148


>gi|256828255|ref|YP_003156983.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
 gi|256577431|gb|ACU88567.1| RNA methyltransferase, TrmH family, group 1 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 248

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 19/147 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKM 202
           P NIG++ R+ +   C  I+  + ++  +   L  +   A   +        L +AL   
Sbjct: 15  PENIGSVARACLNMGCGQIVLVEPWNWDQGKALPLATHHAGHLLENIRIHGTLAEALAPY 74

Query: 203 H------------SWGFQTIGLSSDSKKP--LEQEIKNDKIALILGAEGKGLRPKTQETA 248
                          G QT     +   P  +EQ     K+A++ G E KGL  +  +  
Sbjct: 75  SFAYGTTARTGGWRQGIQT----PEEAAPRIIEQSNAGAKVAIVFGPEDKGLTNEETDLC 130

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI 275
             +  +     + +LN+S A  V LY 
Sbjct: 131 NQLLTIPTTDNLTSLNLSQAVMVVLYE 157


>gi|300778690|ref|ZP_07088548.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300504200|gb|EFK35340.1| TrmH family RNA methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 150

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 1/146 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R  V       +            L +S      H+     +++
Sbjct: 4   IVLVEPEIPNNTGNIGRLCVGTESRLHLVHPFGFVINDKNLKRSGLDYWVHLDVSEYADI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + ++ +     +   +SS ++K   +    D   L+ G E  GL     +   +   + 
Sbjct: 64  EEWIETVPDRS-RVFLMSSHAEKSYLETDFQDGDWLVFGKESAGLSKDVLDRFDNHLTIP 122

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
           M  +I++ N++N+ A  +   +   +
Sbjct: 123 MSKLIRSFNIANSVAFVIGEAKRQLS 148


>gi|313620923|gb|EFR92097.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           S4-378]
 gi|313625369|gb|EFR95160.1| RNA methyltransferase, TrmH family, group 3 [Listeria innocua FSL
           J1-023]
          Length = 43

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +E    + HL M G + +LN S AA++ LY    
Sbjct: 1   LVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYR 36


>gi|149005602|ref|ZP_01829341.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP18-BS74]
 gi|147762542|gb|EDK69502.1| RNA methyltransferase, TrmH family protein [Streptococcus
           pneumoniae SP18-BS74]
          Length = 167

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 65  EDVISQMKG---KLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|15610502|ref|NP_217883.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Rv]
 gi|15842962|ref|NP_337999.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31794549|ref|NP_857042.1| tRNA/rRNA methylase SpoU [Mycobacterium bovis AF2122/97]
 gi|121639293|ref|YP_979517.1| putative tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663229|ref|YP_001284752.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra]
 gi|148824575|ref|YP_001289329.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11]
 gi|167967350|ref|ZP_02549627.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis H37Ra]
 gi|215428869|ref|ZP_03426788.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
 gi|215432336|ref|ZP_03430255.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
 gi|218755145|ref|ZP_03533941.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
 gi|219559441|ref|ZP_03538517.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
 gi|224991790|ref|YP_002646479.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800413|ref|YP_003033414.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435]
 gi|254233970|ref|ZP_04927295.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C]
 gi|254365983|ref|ZP_04982028.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem]
 gi|254552468|ref|ZP_05142915.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260202561|ref|ZP_05770052.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
 gi|260206730|ref|ZP_05774221.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
 gi|289444978|ref|ZP_06434722.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
 gi|289571603|ref|ZP_06451830.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
 gi|289576099|ref|ZP_06456326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
 gi|289752083|ref|ZP_06511461.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
 gi|289755496|ref|ZP_06514874.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
 gi|289763549|ref|ZP_06522927.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
 gi|297636026|ref|ZP_06953806.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207]
 gi|297733024|ref|ZP_06962142.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN R506]
 gi|306777707|ref|ZP_07416044.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001]
 gi|306782432|ref|ZP_07420769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002]
 gi|306786251|ref|ZP_07424573.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003]
 gi|306790621|ref|ZP_07428943.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004]
 gi|306795148|ref|ZP_07433450.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005]
 gi|306799339|ref|ZP_07437641.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006]
 gi|306805185|ref|ZP_07441853.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008]
 gi|306809372|ref|ZP_07446040.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007]
 gi|306969477|ref|ZP_07482138.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009]
 gi|306973823|ref|ZP_07486484.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010]
 gi|307081535|ref|ZP_07490705.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011]
 gi|307086140|ref|ZP_07495253.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012]
 gi|313660356|ref|ZP_07817236.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN V2475]
 gi|2661644|emb|CAA15751.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13883300|gb|AAK47813.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|31620145|emb|CAD95558.1| PROBABLE tRNA/rRNA METHYLASE SPOU (tRNA/rRNA METHYLTRANSFERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121494941|emb|CAL73427.1| Probable tRNA/rRNA methylase spoU [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124599499|gb|EAY58603.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis C]
 gi|134151496|gb|EBA43541.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis str. Haarlem]
 gi|148507381|gb|ABQ75190.1| tRNA/rRNA methylase SpoU [Mycobacterium tuberculosis H37Ra]
 gi|148723102|gb|ABR07727.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis F11]
 gi|224774905|dbj|BAH27711.1| putative tRNA/rRNA methylase [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253321916|gb|ACT26519.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 1435]
 gi|289417897|gb|EFD15137.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T46]
 gi|289540530|gb|EFD45108.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis K85]
 gi|289545357|gb|EFD49005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T17]
 gi|289692670|gb|EFD60099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T92]
 gi|289696083|gb|EFD63512.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis EAS054]
 gi|289711055|gb|EFD75071.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis GM 1503]
 gi|308213977|gb|EFO73376.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu001]
 gi|308324923|gb|EFP13774.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu002]
 gi|308329154|gb|EFP18005.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu003]
 gi|308332986|gb|EFP21837.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu004]
 gi|308336602|gb|EFP25453.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu005]
 gi|308340475|gb|EFP29326.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu006]
 gi|308344345|gb|EFP33196.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu007]
 gi|308348278|gb|EFP37129.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu008]
 gi|308353003|gb|EFP41854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu009]
 gi|308356844|gb|EFP45695.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu010]
 gi|308360792|gb|EFP49643.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu011]
 gi|308364407|gb|EFP53258.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis SUMu012]
 gi|323717987|gb|EGB27174.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CDC1551A]
 gi|328460146|gb|AEB05569.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 4207]
          Length = 154

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+  A  C+  +            L ++     +       ++L  A + +   
Sbjct: 14  NTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAHAWEALSPA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +              L+ G E  GL   T      T    + M    ++L
Sbjct: 74  --RVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAVA+Y     
Sbjct: 132 NLSNAAAVAVYEAWRQ 147


>gi|289168639|ref|YP_003446908.1| rRNA methylase [Streptococcus mitis B6]
 gi|288908206|emb|CBJ23048.1| rRNA methylase [Streptococcus mitis B6]
          Length = 167

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K         N+    + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAEKVYSDVDLSTNEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            + M    +++LNVSN   V +  Y     
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQ 149


>gi|328946856|gb|EGG40993.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1087]
          Length = 184

 Score = 65.4 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYESL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     +   +S  ++K   +E     D    + G E KGL  +  +       
Sbjct: 82  DDFMEQMDG---RLYLISKFAEKVYSEENYAAEDSHYFMFGREDKGLPEEFMRRHPEKAL 138

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN  +V +  Y    Q +FA
Sbjct: 139 RIPMNDQHVRSLNVSN--SVCMIVYEALRQQNFA 170


>gi|53803355|ref|YP_114950.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757116|gb|AAU91407.1| RNA methyltransferase, TrmH family, group 2 [Methylococcus
           capsulatus str. Bath]
          Length = 159

 Score = 65.4 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +        + A L ++     E     R  + 
Sbjct: 4   VVLYEPEIPPNTGNVIRLCANTGACLHLIEPLGFEMDDARLRRAGLDYREWAEVARHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              +  +     +   L++  +            A + G E +GL               
Sbjct: 64  EGFVGAVAPE--RIFALTTRGEVSHADVTYRPGDAFLFGPESRGLPAALLARFETGRRIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV  +     
Sbjct: 122 LPMRPGSRSLNLSNAVAVVCFEAWRQ 147


>gi|225872216|ref|YP_002753671.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
           51196]
 gi|225793787|gb|ACO33877.1| RNA methyltransferase, TrmH family [Acidobacterium capsulatum ATCC
           51196]
          Length = 240

 Score = 65.4 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL    +P NIGA  R+ + F    +   + +  +     A+SA GA   +   R
Sbjct: 8   PAIAVVLVRTRNPLNIGAAARAMINFGFHDLRVVEPFDLAWQE--ARSAVGAASILASAR 65

Query: 192 -ISNLTDALQKMHSWGFQTIGLSSDSKK-------------PLEQEIKNDKIALILGAEG 237
             S L DA+          +G S+   +             P   +    +IAL+ G E 
Sbjct: 66  ECSTLADAVADCT----CVLGTSAIGDRQPLQPIVDLPAALPWLAQRVAGRIALVFGQEK 121

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            GL         ++  +       ++N+  A AV LY    
Sbjct: 122 HGLTNHDLSHCDAILRIPTLPEQASMNLGQAVAVCLYEFAR 162


>gi|300741849|ref|ZP_07071870.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
 gi|300381034|gb|EFJ77596.1| RNA methyltransferase, TrmH family [Rothia dentocariosa M567]
          Length = 155

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +        E A L ++     +         L DA + M 
Sbjct: 12  PGNTGNAIRLAAVTGAELHLVEPLGFNFEDAHLRRAGLDYHDLAVVTVHKTLQDAWKAMM 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAHLHM-PGII 260
               +    ++ +          D   L+ G E  GL    Q  E  T    + M PG  
Sbjct: 72  PA--RVFAFTTTAATSYADLEYRDGDVLMFGPESVGLPADVQQDEHITERVKIPMIPGR- 128

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN++N+A++A++     
Sbjct: 129 RSLNLANSASIAIFEAWRQ 147


>gi|312143853|ref|YP_003995299.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp.
           'sapolanicus']
 gi|311904504|gb|ADQ14945.1| RNA methyltransferase, TrmH family, group 2 [Halanaerobium sp.
           'sapolanicus']
          Length = 168

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       +    L ++       +      +L
Sbjct: 3   IVLVEPEIPQNTGNIARTCAVTDSALHLIRPLGFSTSDKHLKRAGLDYWHKLDINYYDSL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHL 254
            +  +K     F     +  +     +         + G E  GL     ++       +
Sbjct: 63  DEFFKKNKDGRFF-YATT-KAANSYHELDYQADDYFLFGKETAGLPETLLKDNLEYCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHFA 281
            M   +++LN++N+ ++ +Y    QN+F 
Sbjct: 121 PMKDSLRSLNLANSVSIIIYEALRQNNFN 149


>gi|256028386|ref|ZP_05442220.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289766311|ref|ZP_06525689.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289717866|gb|EFD81878.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 150

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTKLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKVWDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L+   + G +    ++ +K+            ++ G E +G+         E   ++
Sbjct: 63  EEFLEA--NKGIRLFYATTKTKQKYCDVKYEKNDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G   +LN+SN+A V LY       
Sbjct: 121 PMIPM-GR--SLNLSNSAVVILYEAYRQLG 147


>gi|299822392|ref|ZP_07054278.1| RNA methyltransferase [Listeria grayi DSM 20601]
 gi|299815921|gb|EFI83159.1| RNA methyltransferase [Listeria grayi DSM 20601]
          Length = 172

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++  +   +L
Sbjct: 8   IVLYQPEIPANTGNISRTCAGTDTFLHLIRPLGFSTDDKMLKRAGLDYWDNVKLVYHDSL 67

Query: 196 TDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATS 250
              L+       +            +  +  N     I G E  GL  +      ET   
Sbjct: 68  EAFLEASKDGELYFITKFGRHVYSDVSYQDTNKDYYFIFGKETTGLPDELLQQHEETC-- 125

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I++LN+SN AA+ +Y     
Sbjct: 126 -LRIPMTDKIRSLNLSNTAALVIYEVLRQ 153


>gi|167647484|ref|YP_001685147.1| tRNA/rRNA methyltransferase SpoU [Caulobacter sp. K31]
 gi|167349914|gb|ABZ72649.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter sp. K31]
          Length = 266

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
               ++L++     NIGA+ R    F  + +   K            SASGA   +   +
Sbjct: 6   PPPCVILNNPQMAENIGAVARVMANFGLEDLRLVKPRDGWPQERAWPSASGATWPLDNAK 65

Query: 192 I-SNLTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKND-KIALILGAE 236
           +   L +A+  +          ++             ++   L  E+     + L+ G E
Sbjct: 66  VFDTLEEAIADLK----LVFATTARPRETRLPVVTPREAAAQLSDEVGRGHAVGLLFGGE 121

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             GL         ++  + +    ++LN++ A ++  Y 
Sbjct: 122 RAGLETDDIALCQAIISIPIDERFRSLNLAQAVSINAYE 160


>gi|168492652|ref|ZP_02716795.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae CDC3059-06]
 gi|225860508|ref|YP_002742017.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|183576971|gb|EDT97499.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae CDC3059-06]
 gi|225726857|gb|ACO22708.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae Taiwan19F-14]
          Length = 167

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAEKIYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|262183803|ref|ZP_06043224.1| putative rRNA methylase, SpoU class [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 156

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L +V D+   P N G  +R+A        +        E   L ++     +      
Sbjct: 2   SSLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFEDKHLKRAGLDYHDLADLKI 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
             +    ++ +     +    ++ ++K        +   L+ G E  GL  +       T
Sbjct: 62  HKDFDACMEALPDA--RVFAFTTHTEKWFTDVEYQEGDVLLFGTEPTGLPEEHAFHPRVT 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M    +++N+SNAA+ A+Y       
Sbjct: 120 ERVRIPMMPARRSMNLSNAASTAVYEAWRQLG 151


>gi|238754752|ref|ZP_04616104.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
 gi|238707060|gb|EEP99425.1| Methyltransferase [Yersinia ruckeri ATCC 29473]
          Length = 157

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFTWDDKRLRRAGLDYHEFASIKRHHDY 63

Query: 196 TDALQKMH---SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L        +   T G  + S    +         L+ G E +GL     E   A  
Sbjct: 64  QAFLDSEKPDRLFALTTKGTPAHSAVNYQDNDF-----LLFGPETRGLPASILEALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMQPNSRSMNLSNAVSVVVYEAWRQLG 149


>gi|66048105|ref|YP_237946.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258812|gb|AAY39908.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330970743|gb|EGH70809.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 151

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+      ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ASCLEKIGNP--RVFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|315302368|ref|ZP_07873242.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL
           F6-596]
 gi|313629255|gb|EFR97514.1| RNA methyltransferase, TrmH family, group 2 [Listeria ivanovii FSL
           F6-596]
          Length = 169

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      ++
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLTYYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQ----ETA 248
            +  +   + G +   ++   +        +D       I G E  GL         E  
Sbjct: 65  DEFFE--KNQGGEFYFITKFGRHVYSDIDYSDTSKNYFFIFGKETTGLPDALLQENEENC 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I++LN+SN AAV  Y     
Sbjct: 123 ---LRIPMTDHIRSLNLSNTAAVLAYEALRQ 150


>gi|190572279|ref|YP_001970124.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
 gi|190010201|emb|CAQ43809.1| putative tRNA/rRNA methyltransferase [Stenotrophomonas maltophilia
           K279a]
          Length = 159

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 4/150 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            Q  ++L     P N G ++R          +        E   L ++     E+     
Sbjct: 5   PQFHVILFQPEIPPNTGNVIRLCANTGAQLHLVEPLGFALEDKQLKRAGLDYHEYSRLQV 64

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T- 249
             +L  AL ++     +   LS+ +    +     D  A + G E +GL     +     
Sbjct: 65  HPDLDTALARIAPK--RLFALSTRASVRYDSVAFEDGDAFLFGPESRGLPQDVLDALPDG 122

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    ++LN+SN  AV +Y     
Sbjct: 123 RRLRLPMRPDNRSLNLSNTVAVVMYEAWRQ 152


>gi|307711340|ref|ZP_07647760.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
 gi|307616856|gb|EFN96036.1| spoU rRNA Methylase family protein [Streptococcus mitis SK321]
          Length = 167

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|169833898|ref|YP_001693989.1| RNA methyltransferase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996400|gb|ACA37012.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 167

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|167009227|ref|ZP_02274158.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 161

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   L ++     E        N  +  Q+  
Sbjct: 18  PPNTGNIIRLCANVGAKLHLIELFGFKLEDKQLRRAGLDYHEFADLKIYKNFAEFYQQNK 77

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
               Q    ++ +K+   Q   +    L+ G E +GL     E        + M    ++
Sbjct: 78  DK--QIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQLKIPMHKNSRS 135

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 136 LNLSNSVAVILYGALNNIG 154


>gi|89256878|ref|YP_514240.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315257|ref|YP_763980.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503053|ref|YP_001429118.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368153|ref|ZP_04984173.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|254369752|ref|ZP_04985762.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953624|ref|ZP_06558245.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313057|ref|ZP_06803751.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144709|emb|CAJ80040.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130156|gb|ABI83343.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253963|gb|EBA53057.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica 257]
 gi|156253656|gb|ABU62162.1| RNA methyltransferase, TrmH family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157122711|gb|EDO66840.1| tRNA/rRNA methyltransferase [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 155

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   L ++     E        N  +  Q+  
Sbjct: 12  PPNTGNIIRLCANVGAKLHLIELFGFKLEDKQLRRAGLDYHEFADLKIYKNFAEFYQQNK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
               Q    ++ +K+   Q   +    L+ G E +GL     E        + M    ++
Sbjct: 72  DK--QIWACTTKAKQYYHQVDFSCDDILLFGPETRGLPADVLELLKQTQLKIPMHKNSRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 130 LNLSNSVAVILYGALNNIG 148


>gi|315929850|gb|EFV09013.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 155

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   NL
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPTVFDISQKAVRRAGLDYWDKLEPIIWENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            + L +   +  +    ++ S+K            L  G+E  GL  +  +        +
Sbjct: 64  EEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPMELMQLNWENAITI 123

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  +  Y     
Sbjct: 124 PMKSYGR--SLNLATSVGIISYEALRQ 148


>gi|269103943|ref|ZP_06156640.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163841|gb|EEZ42337.1| tRNA (cytosine34-2'-O-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 154

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R       +  +        E   L ++     +     R  +     + M   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVYRHKDFAAFKEAMGDR 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKAL 263
             +    ++ +              LI G E +GL  +  E+        + M    ++L
Sbjct: 74  --RLFACTTKTTNYHTNAKFEQGDVLIFGPETRGLPAEFIESLPLEQRLRIPMQPDSRSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  +      
Sbjct: 132 NLSNAVAIIAFEAWRQM 148


>gi|330818396|ref|YP_004362101.1| RNA methyltransferase [Burkholderia gladioli BSR3]
 gi|327370789|gb|AEA62145.1| RNA methyltransferase [Burkholderia gladioli BSR3]
          Length = 169

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A L ++     E+       + 
Sbjct: 17  VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQMQVHRDW 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              + +      +    ++                 + GAE +GL     E         
Sbjct: 77  DAFIAREQPDPARLFAFTTRGSGRFHDHAFTPGDWFVFGAETRGLSESMLERFPNEQRVR 136

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 137 LPMRPGNRSLNLSNTVAVVVFEAWRQ 162


>gi|331017065|gb|EGH97121.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 151

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+      ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ASCLEKIGNP--RLFAFTTKGSRPFHDASFTPGDAFLFGPESRGLPADILDSLSSEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|325117118|emb|CBZ52670.1| putative rRNA methylase [Neospora caninum Liverpool]
          Length = 545

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
             ++  KK + +E +   +A+++G E KG   +  +    +A +       +L+VS AAA
Sbjct: 455 ATATGFKKNVVEEDEEICLAVVVGNEQKGSSREVLDACDGIAAIAQVKG-DSLSVSTAAA 513

Query: 271 VALYITQN 278
           V LY  Q 
Sbjct: 514 VVLYTLQQ 521



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-- 193
           +VLD V +  NIG ++R+A +     ++ +     + +A  A+ + G++ H+  ++    
Sbjct: 264 LVLDDVQNSDNIGTLMRTAFSLGVRSVLLSPVSYAAVNARSARVSMGSMFHLRLLKCDPI 323

Query: 194 -------NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----DKIALILGA 235
                  +L          G       S  + PL   +          +++G 
Sbjct: 324 LADSALCSLGGGFAWSRHSGLDLSAYHSAPRSPLPMALTKLRRVSPSCVVIGT 376


>gi|303281969|ref|XP_003060276.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457747|gb|EEH55045.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 492

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 8/141 (5%)

Query: 140 HVNDP---HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
            +  P    N+G + RSA       I T       +    A   + + + +P  +  +  
Sbjct: 313 GIVKPKHDANVGTLWRSAWQLGAAFIFTVAAR--YKHKYEASDTTQSHKQLPLHKHDDWG 370

Query: 197 DALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           D   K    G   + +      PL+      +   +LG+E  GL     E       L  
Sbjct: 371 DF-AKSSPHGAVLVAIEM-GGTPLQDFAHPPRAVYVLGSEDNGLNRPIVEACQCHVALPK 428

Query: 257 -PGIIKALNVSNAAAVALYIT 276
             G   + NV+ A  + +Y  
Sbjct: 429 WFGRSASYNVAMAGTLVMYDR 449


>gi|213971171|ref|ZP_03399289.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato T1]
 gi|301382299|ref|ZP_07230717.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058530|ref|ZP_07250071.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato K40]
 gi|302132197|ref|ZP_07258187.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213924040|gb|EEB57617.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato T1]
          Length = 151

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+      ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ASCLEKIGNP--RLFAFTTKGSRPFHDASFTPGDAFLFGPESRGLPADILDSLSSEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|261366563|ref|ZP_05979446.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
 gi|282571380|gb|EFB76915.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
           15176]
          Length = 169

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 6/146 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +        +   L ++       +      +L
Sbjct: 6   IVLVEPQIPQNSGNIARTCAVTGARLHMVGPMGFAIDDKKLKRAGLDYWHQLDITYYKDL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK--TQETATSMAH 253
            D      + G      S   ++ ++ +  +    L+ G E  GL  +   +  A     
Sbjct: 66  ADFFS--KNKGPFFYFTSKGPRRHVDVQYPDGAY-LVFGREDAGLPEELLVRHEAD-CVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    + LN+SNA AV +Y     
Sbjct: 122 MPMRRGERCLNLSNAVAVGVYEVLRQ 147


>gi|189424323|ref|YP_001951500.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
 gi|189420582|gb|ACD94980.1| RNA methyltransferase, TrmH family, group 1 [Geobacter lovleyi SZ]
          Length = 245

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 19/158 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L ++L     P NIG + R+        +               K A  A + +    
Sbjct: 6   TGLSVILVEPQFPGNIGMVCRAMKNMGLSRLRLVAGC-DHLHPEAFKFAVSARDLLEQAE 64

Query: 192 -ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK------------IALILGAEGK 238
              +L DAL  +       +  +  S K   QE+ +               AL+ G E  
Sbjct: 65  LFDSLADALADISVS----VATTRRSGK-YRQELLSPPQAAQALLQAPGSAALVFGREDH 119

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL        T  A +       +LN++ AA +  Y  
Sbjct: 120 GLSTADLSLCTLQATIPSSSEYGSLNLAQAALIFCYEL 157


>gi|303231925|ref|ZP_07318633.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513354|gb|EFL55388.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 161

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 9/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE----TATSM 251
            +   K     +     +  +K             L+ G E +GL     E    T    
Sbjct: 63  EELYAKYPDRRYF-YATT-KAKHVHSDVKFEIGDMLVFGPETRGLPESLLEGNEETC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ A+  Y      
Sbjct: 118 IRIPMVEEARSLNLSNSVAIIAYEAMRQL 146


>gi|124268369|ref|YP_001022373.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124261144|gb|ABM96138.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 161

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E  +L ++     EH    R ++ 
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMEDKLLQRAGLDYHEHAAVRRHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L        +    ++   +PL +        L+ G E +GL P  ++   A     
Sbjct: 64  EALLVAEQPDPQRLFAFTTRGSRPLTEVPWQAGDWLVFGCETRGLDPTLRDRFPAAQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AVA++     
Sbjct: 124 LPMRAGQRSLNLSNAVAVAVFEAWRQ 149


>gi|289207239|ref|YP_003459305.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           K90mix]
 gi|288942870|gb|ADC70569.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           K90mix]
          Length = 154

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R A        +        +SA   ++     E        +L
Sbjct: 4   IVLYEPEIPPNTGNIIRLAANTGAALHLIHPLGFELDSARARRAGLDYHELARVQEYDSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
               + +     +   L++  +   +Q       AL+ G E +GL     +         
Sbjct: 64  ERWRESIRPQ--REFALTTRGQARYDQAGFQSGDALLFGPETRGLPQAVLDALPPEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SNA AV +Y       
Sbjct: 122 LPMQPDSRSLNLSNAVAVVVYEAWRQLG 149


>gi|288559911|ref|YP_003423397.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
           M1]
 gi|288542621|gb|ADC46505.1| RNA methyltransferase TrmH family [Methanobrevibacter ruminantium
           M1]
          Length = 263

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 33/187 (17%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           +   ++           + +V      P N+G + R+   F  + ++     +  E A  
Sbjct: 12  KVKEIVEDEETIRLKENIYVVFVECESPGNVGFLARTMGNFGLNKLVLINPCTLKEEAYY 71

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QE 223
             +   A + +    I +      K     F  IG +                       
Sbjct: 72  QATH--ARDTVENAMIYDTVGEFVKDKKIDF-IIGSTGAPGGSYNISRIPLKPEELAKSM 128

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
             NDKIA++ G EG GL     +    +  +        M       N+S+AAA+ LY  
Sbjct: 129 NYNDKIAILFGREGNGLTNAEVDMCDLIVSIPTDPSYPIM-------NISHAAAIILYEI 181

Query: 277 ---QNHF 280
              +N F
Sbjct: 182 FKNRNEF 188


>gi|78045792|ref|YP_361967.1| TrmH family tRNA methyltransferase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925841|ref|ZP_08187210.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118]
 gi|78034222|emb|CAJ21867.1| tRNA/rRNA methyltransferase, SpoU class; TrmH family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325543672|gb|EGD15086.1| rRNA methylase, putative, group 2 [Xanthomonas perforans 91-118]
          Length = 158

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +            L ++     E+ P    ++L
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLQVHTDL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
             AL  +     +   LS+ S    +     D  A + G E +GL  +  E+        
Sbjct: 68  PSALAAIAPK--RVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 126 LPMRPDNRSLNLSNTVAVMVFEAWRQ 151


>gi|303230258|ref|ZP_07317025.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515041|gb|EFL57016.1| RNA methyltransferase, TrmH family, group 2 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 161

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 9/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   + ++       +      N+
Sbjct: 3   IVLYEPEIPGNTGNIARLCAANHMTLHLIKPLGFSIDDKHVKRAGLDYWHLVDVQVHENI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE----TATSM 251
            +   K     +     +  +K             L+ G E +GL     E    T    
Sbjct: 63  EELYAKYPDRRYF-YATT-KAKHVHSDVKFEIGDMLVFGPETRGLPESLLEGNEETC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             + M    ++LN+SN+ A+  Y      
Sbjct: 118 IRIPMVEEARSLNLSNSVAIIAYEAMRQL 146


>gi|295098731|emb|CBK87821.1| rRNA methylase, putative, group 2 [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 157

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E    +R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRHHDY 63

Query: 196 TDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L          +   G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFLGSEKPQRMFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPATILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|237741776|ref|ZP_04572257.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|256845104|ref|ZP_05550562.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294785608|ref|ZP_06750896.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           3_1_27]
 gi|229429424|gb|EEO39636.1| 23S rRNA methyltransferase [Fusobacterium sp. 4_1_13]
 gi|256718663|gb|EEU32218.1| 23S rRNA methyltransferase [Fusobacterium sp. 3_1_36A2]
 gi|294487322|gb|EFG34684.1| RNA methyltransferase, TrmH family, group 2 [Fusobacterium sp.
           3_1_27]
          Length = 150

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTTLHLIKPLGFSLDEKQVKRAGMDYWHLVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L+   + G +    ++ +K+        +   ++ G E +G+         E   ++
Sbjct: 63  EEFLET--NKGIRLFYATTKTKQKYCDVKYEENDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G   +LN+SN+A + LY       
Sbjct: 121 PMIPM-GR--SLNLSNSAVIILYEAYRQLG 147


>gi|215405386|ref|ZP_03417567.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
 gi|215413262|ref|ZP_03421953.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
 gi|215447687|ref|ZP_03434439.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
 gi|289747187|ref|ZP_06506565.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
 gi|294995866|ref|ZP_06801557.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 210]
 gi|298526847|ref|ZP_07014256.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
 gi|289687715|gb|EFD55203.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 02_1987]
 gi|298496641|gb|EFI31935.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis 94_M4241A]
 gi|326905207|gb|EGE52140.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis W-148]
          Length = 154

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+  A  C+  +            L ++     +       ++L  A + +   
Sbjct: 14  NTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAHAWEALSPA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +         +    L+ G E  GL   T      T    + M    ++L
Sbjct: 74  --RVFAFTAQATTLFTNVGYHAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAVA+Y     
Sbjct: 132 NLSNAAAVAVYEAWRQ 147


>gi|47458956|ref|YP_015818.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
 gi|47458284|gb|AAT27607.1| spoU class tRNA/rRNA methylase [Mycoplasma mobile 163K]
          Length = 173

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRISN 194
           +VL     P N G I+R+  A      I        +   L +SA+G  LE I +     
Sbjct: 4   IVLFQPEIPPNTGNIIRTCKATQAKLHIIKPIAFDLDPKYLKRSAAGWILEDIEHEVYET 63

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----NDKIALILGAEGKGLRPKT----Q 245
             D L+K          L+   K             ND + ++ G E  G+  K      
Sbjct: 64  YDDFLKKHSEK--SIYYLTRYGKINYSDVNFKKYQNNDDLFVMFGTESTGIPKKILKNNL 121

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E       + M   +++LN++N   +  Y  Q  
Sbjct: 122 ENC---LRIPMDKDMRSLNLANTVFLIAYEIQRQ 152


>gi|227875350|ref|ZP_03993492.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269976366|ref|ZP_06183358.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|306818665|ref|ZP_07452387.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307700709|ref|ZP_07637734.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris
           FB024-16]
 gi|227844255|gb|EEJ54422.1| SpoU family rRNA methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|269935437|gb|EEZ91979.1| probable tRNA/rRNA methyltransferase [Mobiluncus mulieris 28-1]
 gi|304648351|gb|EFM45654.1| TrmH family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|307613704|gb|EFN92948.1| RNA methyltransferase, TrmH family, group 2 [Mobiluncus mulieris
           FB024-16]
          Length = 153

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 5/139 (3%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N GA +R A        +        E   L ++     +     R  +L D    +  
Sbjct: 13  GNTGAAIRLAACTGATLHVVEPTVFDFEDTKLKRAGLDYHDLAHLQRHPDLDDCFAAIPG 72

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKA 262
              +    +  ++  L      D  AL+ G E  GL     +    TS   + M    ++
Sbjct: 73  ---KIYAFTGHTEVMLPSVHFQDGDALMFGPEDTGLPVPVMDDPRVTSRVRIPMLEGRRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN++ +AAV LY       
Sbjct: 130 LNLAISAAVGLYFAWGQLG 148


>gi|320537986|ref|ZP_08037891.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
           F0421]
 gi|320145143|gb|EFW36854.1| RNA methyltransferase, TrmH family, group 1 [Treponema phagedenis
           F0421]
          Length = 240

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 18/165 (10%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++VL       NIG++ R+     C  +  T   S  +   + + A  A       R 
Sbjct: 3   PIIIVLARPEKSKNIGSVCRAMANSDCAELRITGNASDYDQEEICRLAIHADNIWKTARF 62

Query: 193 SNLTDALQKMHSWGFQTI----------------GLSSDSKKPLEQEIKNDKIALILGAE 236
              +  ++ +    +                   G++ +       E    K A++ G E
Sbjct: 63  FEPS--VEGLRQAVYDCAIVAGTTRRMGEKRKSWGMAPEQFASFAFEQGAGKAAIVFGNE 120

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             GL  K  +  +   ++       +LN+S+A  +  Y     F+
Sbjct: 121 RTGLTDKELDICSLAINIPSAQNFPSLNLSHAVQIICYELFRKFS 165


>gi|24114875|ref|NP_709385.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a
           str. 301]
 gi|30065118|ref|NP_839289.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 2a
           str. 2457T]
 gi|74314157|ref|YP_312576.1| putative tRNA/rRNA methyltransferase YibK [Shigella sonnei Ss046]
 gi|82545974|ref|YP_409921.1| tRNA/rRNA methyltransferase YibK [Shigella boydii Sb227]
 gi|110807718|ref|YP_691238.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri 5 str.
           8401]
 gi|187730115|ref|YP_001882306.1| putative tRNA/rRNA methyltransferase YibK [Shigella boydii CDC
           3083-94]
 gi|300907650|ref|ZP_07125278.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           84-1]
 gi|301303842|ref|ZP_07209961.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           124-1]
 gi|24054114|gb|AAN45092.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043379|gb|AAP19100.1| hypothetical protein S4123 [Shigella flexneri 2a str. 2457T]
 gi|73857634|gb|AAZ90341.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81247385|gb|ABB68093.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|110617266|gb|ABF05933.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|187427107|gb|ACD06381.1| RNA methyltransferase, TrmH family, group 2 [Shigella boydii CDC
           3083-94]
 gi|281602968|gb|ADA75952.1| putative tRNA/rRNA methyltransferase yibK [Shigella flexneri
           2002017]
 gi|300400586|gb|EFJ84124.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           84-1]
 gi|300840805|gb|EFK68565.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           124-1]
 gi|313647521|gb|EFS11971.1| spoU rRNA Methylase family protein [Shigella flexneri 2a str.
           2457T]
 gi|315253995|gb|EFU33963.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           85-1]
 gi|320176330|gb|EFW51390.1| putative tRNA/rRNA methyltransferase YibK [Shigella dysenteriae CDC
           74-1112]
 gi|320186849|gb|EFW61569.1| putative tRNA/rRNA methyltransferase YibK [Shigella flexneri CDC
           796-83]
 gi|323166910|gb|EFZ52649.1| spoU rRNA Methylase family protein [Shigella sonnei 53G]
 gi|332749942|gb|EGJ80354.1| spoU rRNA Methylase family protein [Shigella flexneri K-671]
 gi|332750102|gb|EGJ80513.1| spoU rRNA Methylase family protein [Shigella flexneri 4343-70]
 gi|332751237|gb|EGJ81640.1| spoU rRNA Methylase family protein [Shigella flexneri 2747-71]
 gi|332764194|gb|EGJ94431.1| spoU rRNA Methylase family protein [Shigella flexneri 2930-71]
 gi|332996168|gb|EGK15795.1| spoU rRNA Methylase family protein [Shigella flexneri VA-6]
 gi|332997309|gb|EGK16925.1| spoU rRNA Methylase family protein [Shigella flexneri K-218]
 gi|332997816|gb|EGK17427.1| spoU rRNA Methylase family protein [Shigella flexneri K-272]
 gi|333012857|gb|EGK32234.1| spoU rRNA Methylase family protein [Shigella flexneri K-304]
 gi|333013348|gb|EGK32720.1| spoU rRNA Methylase family protein [Shigella flexneri K-227]
          Length = 157

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  RAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|16131477|ref|NP_418063.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|26250250|ref|NP_756290.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli CFT073]
 gi|89110405|ref|AP_004185.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. W3110]
 gi|91213120|ref|YP_543106.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UTI89]
 gi|110643850|ref|YP_671580.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 536]
 gi|117625884|ref|YP_859207.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli APEC
           O1]
 gi|170083114|ref|YP_001732434.1| rRNA methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170680159|ref|YP_001745908.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           SMS-3-5]
 gi|191170469|ref|ZP_03032022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
 gi|215488886|ref|YP_002331317.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O127:H6
           str. E2348/69]
 gi|218560681|ref|YP_002393594.1| tRNA/rRNA methyltransferase YibK [Escherichia coli S88]
 gi|218691893|ref|YP_002400105.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli ED1a]
 gi|218702375|ref|YP_002410004.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI39]
 gi|218707241|ref|YP_002414760.1| putative tRNA /rRNA methyltransferase YibK [Escherichia coli
           UMN026]
 gi|227883776|ref|ZP_04001581.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
 gi|237703377|ref|ZP_04533858.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|238902697|ref|YP_002928493.1| putative rRNA methylase [Escherichia coli BW2952]
 gi|254038806|ref|ZP_04872858.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|293407230|ref|ZP_06651154.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
 gi|293413043|ref|ZP_06655711.1| RNA methyltransferase [Escherichia coli B354]
 gi|298382977|ref|ZP_06992572.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
 gi|300898753|ref|ZP_07117061.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           198-1]
 gi|300939207|ref|ZP_07153888.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           21-1]
 gi|300948061|ref|ZP_07162200.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           116-1]
 gi|300954500|ref|ZP_07166949.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           175-1]
 gi|300983585|ref|ZP_07176677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           200-1]
 gi|300984991|ref|ZP_07177243.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           45-1]
 gi|301018938|ref|ZP_07183161.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           69-1]
 gi|301028365|ref|ZP_07191612.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           196-1]
 gi|301047398|ref|ZP_07194478.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           185-1]
 gi|301644272|ref|ZP_07244275.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           146-1]
 gi|306816043|ref|ZP_07450181.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
 gi|307140305|ref|ZP_07499661.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli H736]
 gi|307314306|ref|ZP_07593914.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
 gi|312968052|ref|ZP_07782263.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
 gi|331644325|ref|ZP_08345454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
 gi|331649424|ref|ZP_08350510.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
 gi|331655239|ref|ZP_08356238.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
 gi|331659929|ref|ZP_08360867.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA206]
 gi|331665234|ref|ZP_08366135.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA143]
 gi|331685271|ref|ZP_08385857.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
 gi|84028007|sp|P0AGJ8|TRML_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|84028008|sp|P0AGJ7|TRML_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|26110679|gb|AAN82864.1|AE016768_282 Hypothetical tRNA/rRNA methyltransferase yibK [Escherichia coli
           CFT073]
 gi|466744|gb|AAB18583.1| alternate gene name yibK [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1790034|gb|AAC76630.1| tRNA Leu mC34/mU34 2'-O-methyltransferase, SAM-dependent
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85676436|dbj|BAE77686.1| predicted rRNA methylase [Escherichia coli str. K12 substr. W3110]
 gi|91074694|gb|ABE09575.1| hypothetical protein UTI89_C4147 [Escherichia coli UTI89]
 gi|110345442|gb|ABG71679.1| hypothetical tRNA/rRNA methyltransferase YibK [Escherichia coli
           536]
 gi|115515008|gb|ABJ03083.1| predicted rRNA methylase [Escherichia coli APEC O1]
 gi|169890949|gb|ACB04656.1| predicted rRNA methylase [Escherichia coli str. K-12 substr. DH10B]
 gi|170517877|gb|ACB16055.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           SMS-3-5]
 gi|190909277|gb|EDV68863.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli F11]
 gi|215266958|emb|CAS11403.1| predicted rRNA methylase [Escherichia coli O127:H6 str. E2348/69]
 gi|218367450|emb|CAR05232.1| putative rRNA methylase [Escherichia coli S88]
 gi|218372361|emb|CAR20235.1| putative rRNA methylase [Escherichia coli IAI39]
 gi|218429457|emb|CAR10423.2| putative rRNA methylase [Escherichia coli ED1a]
 gi|218434338|emb|CAR15262.1| putative rRNA methylase [Escherichia coli UMN026]
 gi|222035317|emb|CAP78062.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Escherichia coli
           LF82]
 gi|226838771|gb|EEH70798.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|226902641|gb|EEH88900.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227839054|gb|EEJ49520.1| tRNA/rRNA methyltransferase YibK [Escherichia coli 83972]
 gi|238863084|gb|ACR65082.1| predicted rRNA methylase [Escherichia coli BW2952]
 gi|260447375|gb|ACX37797.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli DH1]
 gi|281180652|dbj|BAI56982.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|291426041|gb|EFE99075.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1412]
 gi|291468690|gb|EFF11183.1| RNA methyltransferase [Escherichia coli B354]
 gi|294494012|gb|ADE92768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           IHE3034]
 gi|298276813|gb|EFI18331.1| tRNA/rRNA methyltransferase YibK [Escherichia coli FVEC1302]
 gi|299878567|gb|EFI86778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           196-1]
 gi|300300672|gb|EFJ57057.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           185-1]
 gi|300306909|gb|EFJ61429.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           200-1]
 gi|300318533|gb|EFJ68317.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           175-1]
 gi|300357606|gb|EFJ73476.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           198-1]
 gi|300399432|gb|EFJ82970.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           69-1]
 gi|300408271|gb|EFJ91809.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           45-1]
 gi|300452402|gb|EFK16022.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           116-1]
 gi|300455888|gb|EFK19381.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           21-1]
 gi|301077372|gb|EFK92178.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           146-1]
 gi|305850439|gb|EFM50896.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli NC101]
 gi|306906129|gb|EFN36648.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli W]
 gi|307555708|gb|ADN48483.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|307628683|gb|ADN72987.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli UM146]
 gi|309704010|emb|CBJ03356.1| putative RNA-methyltransferase [Escherichia coli ETEC H10407]
 gi|312287311|gb|EFR15220.1| spoU rRNA Methylase family protein [Escherichia coli 2362-75]
 gi|312948170|gb|ADR28997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315062897|gb|ADT77224.1| predicted rRNA methylase [Escherichia coli W]
 gi|315138188|dbj|BAJ45347.1| tRNA/rRNA methyltransferase YibK [Escherichia coli DH1]
 gi|315285360|gb|EFU44805.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           110-3]
 gi|315292984|gb|EFU52336.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           153-1]
 gi|315297043|gb|EFU56323.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           16-3]
 gi|315618690|gb|EFU99276.1| spoU rRNA Methylase family protein [Escherichia coli 3431]
 gi|320193884|gb|EFW68517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           WV_060327]
 gi|323189351|gb|EFZ74633.1| spoU rRNA Methylase family protein [Escherichia coli RN587/1]
 gi|323376510|gb|ADX48778.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli KO11]
 gi|323949848|gb|EGB45732.1| RNA methyltransferase [Escherichia coli H252]
 gi|323954851|gb|EGB50631.1| RNA methyltransferase [Escherichia coli H263]
 gi|324008114|gb|EGB77333.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           57-2]
 gi|324012631|gb|EGB81850.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           60-1]
 gi|330909673|gb|EGH38187.1| tRNA (cytosine34-2'-O-)-methyltransferase [Escherichia coli AA86]
 gi|331036619|gb|EGI08845.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H736]
 gi|331041922|gb|EGI14066.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M605]
 gi|331047254|gb|EGI19332.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli M718]
 gi|331053144|gb|EGI25177.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA206]
 gi|331057744|gb|EGI29730.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           TA143]
 gi|331077642|gb|EGI48854.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli H299]
 gi|332345577|gb|AEE58911.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 157

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  RAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|296100529|ref|YP_003610675.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054988|gb|ADF59726.1| putative tRNA/rRNA methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 157

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E    +R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRHHDY 63

Query: 196 TDALQKMH---SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFLESEKPERMFALTTKGTPAHSAVSYQAGDY-----LMFGPETRGLPATILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|212212123|ref|YP_002303059.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212]
 gi|212010533|gb|ACJ17914.1| 23S rRNA methyltransferase [Coxiella burnetii CbuG_Q212]
          Length = 152

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        +   L ++     E    I   +         
Sbjct: 12  PPNTGNIIRLCANAGASLHLIHPLGFSLDGKRLQRAGLDYREWATIIHYDHFEAFKSAFA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
               +    ++  K              + G E +GL  + +     +    + M    +
Sbjct: 72  EH--RIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQQIRIPMVTEKR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++N++N  ++ LY       
Sbjct: 130 SINLANTVSIILYEAWRQMG 149


>gi|289759523|ref|ZP_06518901.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
 gi|289715087|gb|EFD79099.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis T85]
          Length = 172

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+  A  C+  +            L ++     +       ++L  A + +   
Sbjct: 32  NTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAHAWEALSPA 91

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +         +    L+ G E  GL   T      T    + M    ++L
Sbjct: 92  --RVFAFTAQATTLFTNVGYHAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSL 149

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAVA+Y     
Sbjct: 150 NLSNAAAVAVYEAWRQ 165


>gi|15804150|ref|NP_290189.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           EDL933]
 gi|15833738|ref|NP_312511.1| tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7 str.
           Sakai]
 gi|157158942|ref|YP_001465089.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli
           E24377A]
 gi|168746844|ref|ZP_02771866.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168753429|ref|ZP_02778436.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168759703|ref|ZP_02784710.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766025|ref|ZP_02791032.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168772428|ref|ZP_02797435.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779761|ref|ZP_02804768.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785483|ref|ZP_02810490.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC869]
 gi|168797449|ref|ZP_02822456.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC508]
 gi|191168138|ref|ZP_03029935.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
 gi|193066094|ref|ZP_03047150.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
 gi|193068534|ref|ZP_03049496.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           E110019]
 gi|194427425|ref|ZP_03059974.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
 gi|195935135|ref|ZP_03080517.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. EC4024]
 gi|208809488|ref|ZP_03251825.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813348|ref|ZP_03254677.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819822|ref|ZP_03260142.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209400099|ref|YP_002273088.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209921079|ref|YP_002295163.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli SE11]
 gi|217325527|ref|ZP_03441611.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218556171|ref|YP_002389084.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli IAI1]
 gi|218697330|ref|YP_002404997.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli 55989]
 gi|254795564|ref|YP_003080401.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. TW14359]
 gi|260846626|ref|YP_003224404.1| putative rRNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|260857996|ref|YP_003231887.1| putative rRNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|260870339|ref|YP_003236741.1| putative rRNA methylase [Escherichia coli O111:H- str. 11128]
 gi|261224209|ref|ZP_05938490.1| predicted rRNA methylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254820|ref|ZP_05947353.1| putative rRNA methylase [Escherichia coli O157:H7 str. FRIK966]
 gi|291284980|ref|YP_003501798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O55:H7 str. CB9615]
 gi|300815154|ref|ZP_07095379.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           107-1]
 gi|300919824|ref|ZP_07136299.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           115-1]
 gi|300923393|ref|ZP_07139434.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           182-1]
 gi|301325291|ref|ZP_07218798.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           78-1]
 gi|309797477|ref|ZP_07691868.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           145-7]
 gi|12518356|gb|AAG58753.1|AE005588_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363959|dbj|BAB37907.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|157080972|gb|ABV20680.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           E24377A]
 gi|187771711|gb|EDU35555.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188018363|gb|EDU56485.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002486|gb|EDU71472.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358940|gb|EDU77359.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364523|gb|EDU82942.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189369515|gb|EDU87931.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374384|gb|EDU92800.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC869]
 gi|189380038|gb|EDU98454.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC508]
 gi|190901807|gb|EDV61559.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B7A]
 gi|192926256|gb|EDV80894.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli E22]
 gi|192958185|gb|EDV88626.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           E110019]
 gi|194414465|gb|EDX30738.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli B171]
 gi|208729289|gb|EDZ78890.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734625|gb|EDZ83312.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739945|gb|EDZ87627.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161499|gb|ACI38932.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209754868|gb|ACI75746.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754870|gb|ACI75747.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754872|gb|ACI75748.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754874|gb|ACI75749.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209754876|gb|ACI75750.1| hypothetical protein ECs4484 [Escherichia coli]
 gi|209914338|dbj|BAG79412.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217321748|gb|EEC30172.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218354062|emb|CAV00592.1| putative rRNA methylase [Escherichia coli 55989]
 gi|218362939|emb|CAR00576.1| putative rRNA methylase [Escherichia coli IAI1]
 gi|254594964|gb|ACT74325.1| predicted rRNA methylase [Escherichia coli O157:H7 str. TW14359]
 gi|257756645|dbj|BAI28147.1| predicted rRNA methylase [Escherichia coli O26:H11 str. 11368]
 gi|257761773|dbj|BAI33270.1| predicted rRNA methylase [Escherichia coli O103:H2 str. 12009]
 gi|257766695|dbj|BAI38190.1| predicted rRNA methylase [Escherichia coli O111:H- str. 11128]
 gi|290764853|gb|ADD58814.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli
           O55:H7 str. CB9615]
 gi|300413177|gb|EFJ96487.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           115-1]
 gi|300420303|gb|EFK03614.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           182-1]
 gi|300532046|gb|EFK53108.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           107-1]
 gi|300847818|gb|EFK75578.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           78-1]
 gi|308118913|gb|EFO56175.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           145-7]
 gi|320191338|gb|EFW65988.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. EC1212]
 gi|320639515|gb|EFX09123.1| putative rRNA methylase [Escherichia coli O157:H7 str. G5101]
 gi|320644954|gb|EFX13984.1| putative rRNA methylase [Escherichia coli O157:H- str. 493-89]
 gi|320650221|gb|EFX18710.1| putative rRNA methylase [Escherichia coli O157:H- str. H 2687]
 gi|320655573|gb|EFX23501.1| putative rRNA methylase [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661307|gb|EFX28731.1| putative rRNA methylase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666321|gb|EFX33320.1| putative rRNA methylase [Escherichia coli O157:H7 str. LSU-61]
 gi|323155260|gb|EFZ41443.1| spoU rRNA Methylase family protein [Escherichia coli EPECa14]
 gi|323160715|gb|EFZ46652.1| spoU rRNA Methylase family protein [Escherichia coli E128010]
 gi|323173199|gb|EFZ58828.1| spoU rRNA Methylase family protein [Escherichia coli LT-68]
 gi|323179422|gb|EFZ64989.1| spoU rRNA Methylase family protein [Escherichia coli 1180]
 gi|323182637|gb|EFZ68040.1| spoU rRNA Methylase family protein [Escherichia coli 1357]
 gi|323944062|gb|EGB40142.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019718|gb|EGB88937.1| RNA methyltransferase, TrmH family, group 2 [Escherichia coli MS
           117-3]
 gi|324116052|gb|EGC09978.1| RNA methyltransferase [Escherichia coli E1167]
 gi|326337390|gb|EGD61225.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. 1044]
 gi|326339915|gb|EGD63722.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli O157:H7
           str. 1125]
          Length = 157

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDF 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L+       +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  RAFLEAENPQRLFALTTKGTPAHSAVNYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMVPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|313899457|ref|ZP_07832967.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2]
 gi|312955745|gb|EFR37403.1| RNA methyltransferase, TrmH family, group 2 [Clostridium sp. HGF2]
          Length = 169

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R+ +A      +        +   L ++    ++ + Y    + 
Sbjct: 4   LVLYEPEIPQNTGNMMRTCMATGTRLHLIQPLGFSLDEQHLKRAGMDYVKELEYTIYKSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQ-ETATSM 251
            +  Q+  S  +    ++   KK   Q         I  ILG E  G+            
Sbjct: 64  EEFTQQNPSDNY--YYMTRYGKKAPSQFDFTKCEGDIYFILGKESTGIPKTILSRQLEHC 121

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHF 280
             L M    ++LN+SN AA+ LY      
Sbjct: 122 MRLPMVANARSLNLSNCAAIILYEALRQL 150


>gi|294626395|ref|ZP_06704996.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599280|gb|EFF43416.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 158

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +            L ++     E+ P    ++L
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYTPLQVHADL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
             AL  +     +   LS+ S    +     D  A + G E +GL  +  E+        
Sbjct: 68  PSALAAIAPK--RVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 126 LPMRPDNRSLNLSNTVAVMVFEAWRQ 151


>gi|289208012|ref|YP_003460078.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
           K90mix]
 gi|288943643|gb|ADC71342.1| RNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio sp.
           K90mix]
          Length = 245

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 15/143 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +VL     P NIG+  R+  A    D ++      P   A     ASGA + +   R+  
Sbjct: 10  VVLVGTTHPGNIGSAARAMKAMGITDLVLVAPERFPHADATAL--ASGADDLLAGARVVD 67

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +L  A+           ++ +     +G    +++ L Q      +AL+ G E  GL   
Sbjct: 68  DLAAAVSDCVWVIGTSARLRTHSVPVLGPDIAAEQVLTQA-AEGPVALVFGREHSGLTNA 126

Query: 244 TQETATSMAHLHMPGIIKALNVS 266
             +   +   +       +LN++
Sbjct: 127 ELDHCNAFVQIPTVPNFSSLNLA 149


>gi|86150167|ref|ZP_01068394.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597538|ref|ZP_01100772.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562524|ref|YP_002344303.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839283|gb|EAQ56545.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190130|gb|EAQ94105.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360230|emb|CAL35025.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926138|gb|ADC28490.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927546|gb|EFV06879.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 155

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   NL
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAVRRAGLDYWDKLEPIIWENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            + L +   +  +    ++ S+K            L  G+E  GL  +  +        +
Sbjct: 64  EEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENAITI 123

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  +  Y     
Sbjct: 124 PMKSYGR--SLNLATSVGIISYEALRQ 148


>gi|328957663|ref|YP_004375049.1| putative rRNA methylase [Carnobacterium sp. 17-4]
 gi|328673987|gb|AEB30033.1| putative rRNA methylase [Carnobacterium sp. 17-4]
          Length = 169

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 53/158 (33%), Gaps = 25/158 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N G I R+  A +    +       ++   L ++       +      NL
Sbjct: 5   IALFEPQIPANTGNIARTCAATNTHLHLIEPLGFQTDDKHLKRAGLDYWNEVHITYHKNL 64

Query: 196 TDALQ-----KMH---SWGFQTIG----LSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
              ++     ++H    +G +        +++                + G E  GL  +
Sbjct: 65  AAFMEVAQNGQLHLITKFGHRVYSDVDYATTEGDHY-----------FLFGKETTGLPEE 113

Query: 244 -TQETATSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
             +E       + M    +++LN+SN AA+ +Y     
Sbjct: 114 FMREHEEDCLRIPMNDEHVRSLNLSNTAAILIYEALRQ 151


>gi|152994588|ref|YP_001339423.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150835512|gb|ABR69488.1| RNA methyltransferase, TrmH family, group 2 [Marinomonas sp. MWYL1]
          Length = 157

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +        E   L ++     E     R  + 
Sbjct: 4   IVLYQPEIPPNTGNVIRLCANTGYHLHLIEPLGFELEDKKLRRAGLDYHEFTRLKRYPDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
              +    +       L++       +    +   L+ G E +GL  +  E         
Sbjct: 64  QAFVN--QNEIGTIYALTTKGSHTHSEASFAENDVLVFGPETRGLPAEFIEALPPAQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  AV +Y +     
Sbjct: 122 LPMQANSRSLNLSNTVAVMVYESWRQLG 149


>gi|326773466|ref|ZP_08232749.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505]
 gi|326636696|gb|EGE37599.1| SpoU rRNA methylase family protein [Actinomyces viscosus C505]
          Length = 168

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R +       +         + A L ++     +       +   + L+++ 
Sbjct: 28  PGNTGAAIRLSANTG-SMLHLVDPLFDMDDAKLRRAGLDYHDLANTRVHATWQECLEQIP 86

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +    +S +++   Q       AL+ G E  GL  +  +    ++   + M    +
Sbjct: 87  G---RIFAFTSHTERLYTQVDWRGDDALLFGPEPTGLPQEILDHPRVSAHLRIPMVEGNR 143

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++N+AA+ LY    
Sbjct: 144 SLNLANSAAIGLYEAWR 160


>gi|86153504|ref|ZP_01071708.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612429|ref|YP_001000579.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005510|ref|ZP_02271268.1| RNA methyltransferase, TrmH family protein [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85843230|gb|EAQ60441.1| rRNA methylase, SpoU family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249452|gb|EAQ72412.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 155

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   NL
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            + L +   +  +    ++ S+K            L  G+E  GL  +  +        +
Sbjct: 64  EEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPMELMQLNWENAITI 123

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  +  Y     
Sbjct: 124 PMKSYGR--SLNLATSVGIISYEALRQ 148


>gi|283457724|ref|YP_003362311.1| putative rRNA methylase [Rothia mucilaginosa DY-18]
 gi|283133726|dbj|BAI64491.1| predicted rRNA methylase [Rothia mucilaginosa DY-18]
          Length = 224

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +        + A L ++     +         L DA + + 
Sbjct: 81  PGNTGNAIRLAAITGAELHLVKPLGFNFDDAHLRRAGLDYHDLAVVTVHETLEDAWEALA 140

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    ++ +               + G E  GL  + Q+    +    + M    +
Sbjct: 141 PE--RVFAFTTTASTSYADIEYRPGDVFMFGPESVGLPAEVQQDPHVSERVKIPMKPGRR 198

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++N+A++A++     
Sbjct: 199 SLNLANSASIAVFEAWRQ 216


>gi|239993570|ref|ZP_04714094.1| putative tRNA/rRNA methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 154

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R +NL
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRHANL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L        +    ++  K            ALI G E +GL     ++        
Sbjct: 64  DAYLNDAKPK--RVFACTTKGKAFHSDVSYEKGDALIFGPETRGLPDDYIQSLPPEQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA +V +Y +   F 
Sbjct: 122 IPMLPDSRSMNLSNAVSVFVYESWRQFG 149


>gi|238023026|ref|ZP_04603452.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
 gi|237865409|gb|EEP66549.1| hypothetical protein GCWU000324_02948 [Kingella oralis ATCC 51147]
          Length = 154

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R      C+  +      P +SA + ++     E    I   
Sbjct: 2   FTVVLFEPEIPPNTGNIIRLCANTGCELRLIKPLGFPLDSAKMKRAGLDYHEFSTLIVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSM 251
           NL + L  +     +   L++  K   +          + G E +GL     +T      
Sbjct: 62  NLAECLDTLQGK--RIFALTTKGKNRPDSVAFQAGDVFLFGPETRGLPATVLDTLPENQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               M    +++N+SN  A+ ++       
Sbjct: 120 IRFPMMPNNRSMNLSNTVAITVFEAWRQLG 149


>gi|221502243|gb|EEE27981.1| rRNA methylase, putative [Toxoplasma gondii VEG]
          Length = 440

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E +  ++A+++G E KG   +  +    +A +       +L+VS AAAV LY  Q 
Sbjct: 361 DEDEEIRLAVVVGNEQKGSSREVLDACDGIAAIAQVKG-DSLSVSTAAAVVLYTLQQ 416



 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++VLD V +  NIG ++R+A +     ++ +     + +A  A+ + G++ H+  ++  
Sbjct: 158 VLVLDDVQNSDNIGTLMRTAFSLGVRSVLLSPVSFAAVNARSARVSMGSMFHLRLLKCD 216


>gi|237832273|ref|XP_002365434.1| rRNA methylase, putative [Toxoplasma gondii ME49]
 gi|211963098|gb|EEA98293.1| rRNA methylase, putative [Toxoplasma gondii ME49]
          Length = 440

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E +  ++A+++G E KG   +  +    +A +       +L+VS AAAV LY  Q 
Sbjct: 361 DEDEEIRLAVVVGNEQKGSSREVLDACDGIAAIAQVKG-DSLSVSTAAAVVLYTLQQ 416



 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           ++VLD V +  NIG ++R+A +     ++ +     + +A  A+ + G++ H+  ++  
Sbjct: 158 VLVLDDVQNSDNIGTLMRTAFSLGVRSVLLSPVSFAAVNARSARVSMGSMFHLRLLKCD 216


>gi|255323955|ref|ZP_05365081.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           tuberculostearicum SK141]
 gi|311739965|ref|ZP_07713799.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|255299135|gb|EET78426.1| RNA methyltransferase, TrmH family, group 2 [Corynebacterium
           tuberculostearicum SK141]
 gi|311305038|gb|EFQ81107.1| TrmH family RNA methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 156

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           SQL +V D+   P N G  +R+A        +        +   L ++     +      
Sbjct: 2   SQLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFDDKHLKRAGLDYHDLADVQI 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
             +    +  +   G +    ++ + K        +   L+ G E  GL  +       T
Sbjct: 62  HKDFQACMDAL--PGARVFAFTTHTDKWFTDIEYQEGDVLLFGTEPTGLPEEHINHPRVT 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M    +++N+SN+A+ A++       
Sbjct: 120 DRVRIPMVPARRSMNLSNSASTAVFEAWRQLG 151


>gi|74317179|ref|YP_314919.1| RNA methyltransferase TrmH [Thiobacillus denitrificans ATCC 25259]
 gi|74056674|gb|AAZ97114.1| RNA methyltransferase TrmH, group 1 [Thiobacillus denitrificans
           ATCC 25259]
          Length = 256

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 23/163 (14%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + + +VL   + P NIGA  R+        ++     +   ++     ASGA++ +   R
Sbjct: 10  ADIRVVLARTSHPGNIGAAARAMKTMGLSQLVLVDP-AVFPNSQADAMASGAVDVLAGAR 68

Query: 192 I-SNLTDALQKMHSWGFQTIGLS---------------SDSKKPLEQEIKNDKIALILGA 235
           +   LT+AL         T+ L                +++   L  E +   +AL+ G 
Sbjct: 69  VCPTLTEALAD------TTLALGVSARRRDIVAEVLNPAEAALRLLGEAQRAPVALVFGN 122

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E  GL  +       +  +       +LN++ A  V  Y  + 
Sbjct: 123 ETSGLSNEELSLCQGLVTIPANPDYSSLNLAAAVQVLSYEIRQ 165


>gi|237744927|ref|ZP_04575408.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
 gi|229432156|gb|EEO42368.1| 23S rRNA methyltransferase [Fusobacterium sp. 7_1]
          Length = 150

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + ++       +      + 
Sbjct: 3   IVLYQPEIPYNTGNIGRSCVLTNTKLHLIKPLGFSLDEKQVKRAGMDYWHLVNLKVWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L+   + G +    ++ +K+            ++ G E +G+         E   ++
Sbjct: 63  EEFLEA--NKGIRLFYATTKTKQKYCDVKYEKNDYIMFGPESRGIPEDILNKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G   +LN+SN+A V LY       
Sbjct: 121 PMIPM-GR--SLNLSNSAVVILYEAYRQLG 147


>gi|254362587|ref|ZP_04978683.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|261491660|ref|ZP_05988242.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261494221|ref|ZP_05990721.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|153094194|gb|EDN75079.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|261310124|gb|EEY11327.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261312675|gb|EEY13796.1| SpoU family rRNA methyltransferase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 159

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E +   +  N 
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKLRRSGLDYHEFVDIQKYKNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQET-ATSMAH 253
            D L++      +   L++  ++            L+ G E +G+  P   E   +    
Sbjct: 64  EDFLERAKPK--RLFALTTRGEQNHSDVKYELGDFLMFGPESRGIPKPLLAEMPMSQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y     F 
Sbjct: 122 IPMCKDSRSMNLSNSVAVVVYEAWRQFG 149


>gi|302384235|ref|YP_003820058.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194863|gb|ADL02435.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 267

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +  +++LD      NIGA+ R    F  D +                 ASGA   +  ++
Sbjct: 5   TPPVVILDRSQMAENIGAVARVMANFGLDRLRLVSPRDGWPQDRAWPLASGADWVLDGVQ 64

Query: 192 ISNLTDALQKMHSWGFQTIG----------LSSDSKKPLEQEIKND-KIALILGAEGKGL 240
           + +   A     +  F T               D+ + L  +  +   + L+ G+E  GL
Sbjct: 65  VFDSVAAATADLTTVFATTARPRETRQPVRTPRDASRVLYDDAASGLGVGLLFGSERAGL 124

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                     +  + +    ++LN++ A A+  Y  +
Sbjct: 125 ETSDIALCQGIVTIPIDPRHQSLNLAQAVAINAYEWR 161


>gi|262065869|ref|ZP_06025481.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380456|gb|EFE87974.1| RNA methyltransferase, TrmH family [Fusobacterium periodonticum
           ATCC 33693]
          Length = 150

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + +S       +      + 
Sbjct: 3   IVLFQPEIPYNTGNIGRSCVLTNTTLHLIKPLGFSLDEKQVKRSGLDYWSSVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D L+   +   +    ++ +K+        +   ++ G E +G+  +      E   ++
Sbjct: 63  EDFLEA--NRNIRLFYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEILNKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G   +LN+SN+A + LY       
Sbjct: 121 PMIPM-GR--SLNLSNSAVIILYEAYRQLG 147


>gi|258645763|ref|ZP_05733232.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
           15470]
 gi|260403133|gb|EEW96680.1| RNA methyltransferase, TrmH family, group 2 [Dialister invisus DSM
           15470]
          Length = 170

 Score = 64.7 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +        +   L ++     + +      N 
Sbjct: 3   IVLVEPEIPGNTGNIARLCAAEHLTLHLVEPLGFQIDDKHLKRAGLDYWDLLDVHVHPNY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
              ++ +    F        + +       +    L+ G E KGL  +           +
Sbjct: 63  DSVVRMLAGHHFYLNTT--KAIRSYTDISYDGDDVLVFGKETKGLPEELLRSHKEDCIRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M    ++LN+SNA A+          
Sbjct: 121 PMIEEARSLNLSNAVAIVAMEAMRQVG 147


>gi|332077772|gb|EGI88233.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 167

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + ++     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 65  EDFMSQIKG---KLYLISKFAEKVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|332307769|ref|YP_004435620.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175098|gb|AEE24352.1| RNA methyltransferase, TrmH family, group 2 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 165

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E    +R ++L
Sbjct: 15  IVLYQPEIPPNTGNIIRLCANTGFALHLIEPLGFEWDDKRVRRAGLDYHEFANVVRHASL 74

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              ++       +    ++       +       AL+ G E +GL  +  ++        
Sbjct: 75  EAYIESRQPK--RVFACTTKGTTFFAKAEYQKGDALLFGPETRGLPNEVIQSLPPEQRVR 132

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    +++N+SNA +V +Y      
Sbjct: 133 IPMLADSRSMNLSNAVSVFVYEAWRQL 159


>gi|24213347|ref|NP_710828.1| rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45658771|ref|YP_002857.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194095|gb|AAN47846.1|AE011251_8 rRNA methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45602015|gb|AAS71494.1| tRNA/rRNA methyltransferase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 153

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 9/142 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R  VA   +  I  +           ++     + +     S+L +    + 
Sbjct: 13  PPNTGNIARLCVALGAELHIVGQASFDLSEKAARRAGLDYWDKVKIYFHSSLEEYKVALP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS--MAHLHMPGIIK 261
           S G     +S   K+           A + G E  G+  + + +     +  + M     
Sbjct: 73  S-GTNLYLISIYGKRSYTNVSYRKGDAFLFGNETSGVPLEIKNSWDQERILKIPME---D 128

Query: 262 A---LNVSNAAAVALYITQNHF 280
           +   LN+SN+ AV  Y      
Sbjct: 129 SSRCLNLSNSVAVISYEAMRQI 150


>gi|157415161|ref|YP_001482417.1| RNA methyltransferase [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386125|gb|ABV52440.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747804|gb|ADN91074.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932614|gb|EFV11545.1| spoU rRNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 155

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   NL
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPTVFDISQKAVRRAGLDYWDKLEPIIWENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            + L +   +  +    ++ S+K            L  G+E  GL  +  +        +
Sbjct: 64  EEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENAITI 123

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  +  Y     
Sbjct: 124 PMKSYGR--SLNLATSVGIISYEALRQ 148


>gi|77165123|ref|YP_343648.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
           19707]
 gi|254433993|ref|ZP_05047501.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
           AFC27]
 gi|76883437|gb|ABA58118.1| RNA methyltransferase TrmH, group 1 [Nitrosococcus oceani ATCC
           19707]
 gi|207090326|gb|EDZ67597.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus oceani
           AFC27]
          Length = 247

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 14/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +VL     P NIGA  R+      C   +   +  P   A     ASGA + +   ++ +
Sbjct: 8   IVLVETTHPGNIGAAARAMRTMGLCHLYLVNPKRFP--CAEATAMASGADKLLAQAKVCT 65

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +L  A+           +  S  +  +         +++ ++  ++A++ G E  GL   
Sbjct: 66  SLAQAITGCQKVFGLSARSRSISWPVLNTRDSGVLVVQEALRGGEVAIVFGRENSGLSNL 125

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +      H+       +LN++ A  V  Y  +
Sbjct: 126 ELDRCNYWVHIPSNPTYSSLNLAAAVQVMAYEVR 159


>gi|288940600|ref|YP_003442840.1| TrmH family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288895972|gb|ADC61808.1| RNA methyltransferase, TrmH family, group 1 [Allochromatium vinosum
           DSM 180]
          Length = 260

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190
           +++  VL       NIGA+ R+        +         ++  LA+++ GA + +    
Sbjct: 10  ARIRFVLVETTHSGNIGAVARAMKTMGLSRLDLVAPRQRPDAEALARAS-GADDLLARAG 68

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAE 236
              NLTDAL      G + +  +S   + +E  +                  +AL+LG E
Sbjct: 69  VHENLTDAL-----AGCRLVVGASARLRSIEWPLLEPPECAERLLAEAGEGEVALMLGRE 123

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             GL          + H+       +LNV+ AA V  Y  + 
Sbjct: 124 SSGLTNDELARCHFLVHIPTNPDFSSLNVAAAAQVLAYEIRR 165


>gi|110799392|ref|YP_695961.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
 gi|168207654|ref|ZP_02633659.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens E str. JGS1987]
 gi|168211765|ref|ZP_02637390.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens B str. ATCC 3626]
 gi|168215129|ref|ZP_02640754.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens CPE str. F4969]
 gi|168218192|ref|ZP_02643817.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens NCTC 8239]
 gi|169343200|ref|ZP_02864215.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens C str. JGS1495]
 gi|110674039|gb|ABG83026.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens ATCC 13124]
 gi|169298658|gb|EDS80737.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens C str. JGS1495]
 gi|170661014|gb|EDT13697.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens E str. JGS1987]
 gi|170710281|gb|EDT22463.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713470|gb|EDT25652.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens CPE str. F4969]
 gi|182379790|gb|EDT77269.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens NCTC 8239]
          Length = 153

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    I        +   L ++       +      + 
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D ++K      +    ++ ++   ++    +   ++ G E  G+       A     + 
Sbjct: 65  EDFMKKYGDK--KIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVPEDV-HNAHHGIKVP 121

Query: 256 MPGIIK-ALNVSNAAAVALYITQNHFA 281
           M      +LN+SN  A+  Y       
Sbjct: 122 MINTTTRSLNLSNTVAIIAYEALRQIG 148


>gi|300313451|ref|YP_003777543.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300076236|gb|ADJ65635.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVHQDW 63

Query: 196 TDALQKMHSWGF----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--AT 249
              L            +   +++    P            + G+E +GL P+ +E+   +
Sbjct: 64  DQFLAHRRQEPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPERRESFPTS 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               L M    +++N+SN  AV +Y     
Sbjct: 124 QRIRLPMRPGNRSINLSNTVAVVVYEAWRQ 153


>gi|139438050|ref|ZP_01771603.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC
           25986]
 gi|133776247|gb|EBA40067.1| Hypothetical protein COLAER_00591 [Collinsella aerofaciens ATCC
           25986]
          Length = 199

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 55/190 (28%), Gaps = 46/190 (24%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +        +   + ++  G  +++     +  
Sbjct: 4   IVLYAPEIPANTGNIGRTCVVTGAHLHLVEPLGFSLDDKTVRRAGLGYWQNLDVTTYAGW 63

Query: 196 TDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA- 252
            D L +  +     +   L+  +++   Q    D   L+ G+E  G+  +    A     
Sbjct: 64  EDFLARNGLSPADERLHLLTKKARRTYAQSTYRDGDYLVFGSESSGIPEELLAAAPERCE 123

Query: 253 HLHMPGIIKA-------------------------------------------LNVSNAA 269
            + M     +                                           LN+SN+A
Sbjct: 124 RIPMLRDCDSLDNAEAWEAHEESLGHTEDDHEAILRQDICGNFVNPDDYRISALNLSNSA 183

Query: 270 AVALYITQNH 279
           A+ LY     
Sbjct: 184 AIVLYEALRQ 193


>gi|125718574|ref|YP_001035707.1| rRNA methylase [Streptococcus sanguinis SK36]
 gi|125498491|gb|ABN45157.1| RRNA methylase, putative [Streptococcus sanguinis SK36]
          Length = 184

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYESL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     Q   +S  ++K   +E          + G E KGL  +  +       
Sbjct: 82  DDFMEQMDG---QLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEFMRRHPEKAL 138

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 139 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 170


>gi|238898865|ref|YP_002924547.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466625|gb|ACQ68399.1| putative tRNA/rRNA methyltransferase [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 170

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +R + L +VL     P N G I+R      C   +            L ++    L++  
Sbjct: 1   MRKNLLNIVLFEPEIPANTGNIIRLCANSGCQLHLIKPLGFDLSDKRLRRA---GLDYHE 57

Query: 189 YIRISNLTDALQKMHSWGFQ------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +  + +  D    +++ GF          L++                L+ G E +GL  
Sbjct: 58  FTAVKHHDDYQAFLNNEGFYNTCVASLFALTTKGYSAHSDVNYQKNDYLLFGPETRGLPS 117

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  ++  A     + M    +++N+SNA ++ +Y       
Sbjct: 118 RLLDSLPAEKKIKIPMQPNSRSMNLSNAVSIVVYEAWRQLN 158


>gi|212635898|ref|YP_002312423.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella piezotolerans WP3]
 gi|212557382|gb|ACJ29836.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella piezotolerans WP3]
          Length = 175

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 17/145 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSP----SESAVLAKSASGALEHIPYIRISNLTDAL 199
           P N+G I+R+A  +  D +  T R  P    + +A        A E IP   + +L DA+
Sbjct: 17  PTNVGGIMRAAGCYRADAVFYTGRRYPLAASNGNAQYNTDTKAASEQIPLTGVESLVDAV 76

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMP 257
               +     + +   +   PL +    DK   I G E  G +  +    A ++ ++   
Sbjct: 77  ----AADVTIVCVDLVEGATPLPEFEHPDKAIYIFGPE-DGTISQQVINRADAVVYVPTV 131

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G +   N++ +  V LY   +  AK
Sbjct: 132 GCM---NLAASVNVLLY---DRLAK 150


>gi|329890697|ref|ZP_08269040.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
 gi|328845998|gb|EGF95562.1| spoU rRNA Methylase family protein [Brevundimonas diminuta ATCC
           11568]
          Length = 261

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +  ++VLD      NIGA+ R    F    +                +ASGA   +  ++
Sbjct: 5   TPPVVVLDKSQMADNIGAVARVMANFGLSELRLVSPRDGWPQDRAWATASGADWVLDGVK 64

Query: 192 I-SNLTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKND-KIALILGAE 236
           +  ++ +A+  ++         ++             +S + L  +  +  K  L+ G E
Sbjct: 65  VFDSVAEAIADLN----TVFATTARPRETRQPVRTPRESARILYDDTASGLKTGLLFGGE 120

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             GL          +  + +     +LN++ A A+  Y  +
Sbjct: 121 RAGLETGDIALCAGITTIPIDPKHHSLNLAQAVAINAYEWR 161


>gi|89094922|ref|ZP_01167853.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum
           sp. MED92]
 gi|89080788|gb|EAR60029.1| Predicted rRNA/tRNA methylase, SpoU family protein [Oceanospirillum
           sp. MED92]
          Length = 156

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        +L
Sbjct: 4   VVLFEPEIPPNTGNIIRLCANTGFHLHLVEPLGFELDDKRLRRAGLDYHEFAAVKIHPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS--MAH 253
              L ++         L++  +    +        L+LG E +GL  + + T        
Sbjct: 64  ETCLSQIEPRKVW--ALTTKGRTSHVEADFQAGDVLLLGPETRGLPEEVRMTIPQGEWLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    ++LN+SNA A+ +Y      
Sbjct: 122 MPMKADSRSLNLSNACAIVVYEAWRQL 148


>gi|317401243|gb|EFV81886.1| rRNA methylase [Achromobacter xylosoxidans C54]
          Length = 156

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V   +  P N G  +R          +        + A + ++     E  P    
Sbjct: 3   HVILVCPEI--PPNTGNAIRLCANTGAQLHLVRPLGFELDDARMRRAGLDYHEWQPVRVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
             L +AL    +       L++ +++ +           + G E  GL  +         
Sbjct: 61  DTLQEALDDTGASASHIYALTTQAQRSVGDVRFEPGDVFVFGRESAGLSAEHHALFAPQQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMRTGQRSLNLSNAVAVTVFEAWRQ 149


>gi|303274998|ref|XP_003056809.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461161|gb|EEH58454.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 292

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 13/177 (7%)

Query: 114 LALETAPLLSPTL----DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
           +ALE  P  +       +  R+    + +    +  N G + RSA         T  +  
Sbjct: 88  VALEPVPRPADARRLQGEDERDGYFGIGVVGGKNEANQGTLWRSAWTCGAAFTFTVAQRF 147

Query: 170 PSESAVLAKSASGALEHIP-YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK 228
              SA   K        +P Y        A  + H+  +  + + +D+  PLE+    D+
Sbjct: 148 AKSSADTVKV----WTSLPAYAYEDWGAFASAQPHACSWVAVEMGTDA-TPLEEFEHPDR 202

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMP-GIIKALNVSNAAAVALY--ITQNHFAK 282
              +LG+E  GL             L    G   + NV+   +V +Y  + +   A+
Sbjct: 203 AIYVLGSEDNGLPSSVLRACAHRVALPAAEGRTASFNVAACGSVVMYDRVAKRRRAE 259


>gi|239817363|ref|YP_002946273.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
           S110]
 gi|239803940|gb|ACS21007.1| RNA methyltransferase, TrmH family, group 2 [Variovorax paradoxus
           S110]
          Length = 153

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        +  +L ++     E+    R +  
Sbjct: 4   IVLVQPEIPPNTGNVIRLAANTGCTLHLVEPLGFSMDDRLLRRAGLDYHEYAEVKRHAGW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              L+       +   L++   + +          L+ G+E  GL P  +E         
Sbjct: 64  QALLEAERPAAERMFALTTRGTRAVHDVRFQPGDWLVFGSETSGLPPAVREGFAEPQRLR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 124 LPMREGQRSLNLSNAVAVTVFEAWRQ 149


>gi|283787764|ref|YP_003367629.1| RNA-methyltransferase [Citrobacter rodentium ICC168]
 gi|282951218|emb|CBG90911.1| putative RNA-methyltransferase [Citrobacter rodentium ICC168]
          Length = 159

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 10/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQKMHSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L          +   G  + S    +Q        L+ G E +GL     +   A  
Sbjct: 64  AAFLAAEKPQRIFALTTKGTPAHSVVSYQQGDY-----LLFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    +++N+SNA +V +Y     
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQ 147


>gi|307710428|ref|ZP_07646867.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
 gi|307618840|gb|EFN97977.1| spoU rRNA Methylase family protein [Streptococcus mitis SK564]
          Length = 167

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++    +     ++    + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAENVYSEVDLSTDEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|307729273|ref|YP_003906497.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1003]
 gi|307583808|gb|ADN57206.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1003]
          Length = 292

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++       +          ASGA + +    +  
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVANVQSDPEAIAMASGADDVLACAHVVP 84

Query: 194 NLTDALQKMHSWGFQTIGLSSD-------------SKKPLEQEIKNDKIALILGAEGKGL 240
            L DAL  +H     ++ L++              +      E  + +IAL+ G E  GL
Sbjct: 85  TLADALSGVH----WSVALTARQREYGPPQWTPRAAASLARDEALHGEIALVFGNERTGL 140

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 141 SNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177


>gi|188591074|ref|YP_001795674.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424]
 gi|170937968|emb|CAP62952.1| putative tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG
           19424]
          Length = 156

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLDDARMRRAGLDYHEYATMRVHDSW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE----TATSM 251
              +        +   L++    P  Q         + G+E +GL P+ +E         
Sbjct: 64  DALMASEQPDPTRMFALTTRGSTPFGQVAFRPGDWFVFGSETRGLSPERREWFPPA--QR 121

Query: 252 AHLHMPGIIKALNVSNAAAVALY--ITQNHFA 281
             L M    ++LN+SN  AV ++    QN FA
Sbjct: 122 IRLPMRPDNRSLNLSNTVAVVVFEAWRQNGFA 153


>gi|300114137|ref|YP_003760712.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299540074|gb|ADJ28391.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus watsonii
           C-113]
          Length = 246

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIGA  R+        +           A     ASGA E +   ++ ++
Sbjct: 8   IVLVETTHPGNIGAAARAMRTMGLHRLYLVNPRRFP-CAEATAMASGADELLVQAKVCTS 66

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           L  A+           GLS+ S+                 QE    ++A++ G E  GL 
Sbjct: 67  LAQAIAGCQK----VFGLSARSRNISWPVLNTRASGALVVQEALKGEVAIVFGRENSGLS 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +      H+       +LN++ A  V  Y  +
Sbjct: 123 NFELDHCNYWVHIPSNPTYSSLNLAAAVQVMAYEIR 158


>gi|293364757|ref|ZP_06611474.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307703003|ref|ZP_07639950.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|331265674|ref|YP_004325304.1| RNA methyltransferase, putative rRNA methylase [Streptococcus
           oralis Uo5]
 gi|291316207|gb|EFE56643.1| TrmH family RNA methyltransferase [Streptococcus oralis ATCC 35037]
 gi|307623396|gb|EFO02386.1| spoU rRNA Methylase family protein [Streptococcus oralis ATCC
           35037]
 gi|326682346|emb|CBY99963.1| RNA methyltransferase, putative rRNA methylase [Streptococcus
           oralis Uo5]
          Length = 167

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 65  EDFMSQMKG---KLYLISKFAEKVYSEANLASSEDHYFLFGREDKGLPEDFMREHPEKAL 121

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|325687110|gb|EGD29133.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK72]
          Length = 167

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     +   +S  ++K   +E          + G E KGL  +  +       
Sbjct: 65  DDFMEQMEG---RLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEFMRRHPEKAL 121

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|326803147|ref|YP_004320965.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651146|gb|AEA01329.1| RNA methyltransferase, TrmH family, group 2 [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 178

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 6/152 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++   L ++     + +      +L
Sbjct: 5   IVLFEPEIPANTGNIARTCAATDTHLHLIEPLGFQTDDKHLKRAGLDYWDALDITYHDDL 64

Query: 196 TDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ-ETATS 250
              +  +       I   ++ +   ++      +   I L+ G E  GL      E    
Sbjct: 65  KAFINYLDGRPLYLISKFATKNYTDIDYMAHKKRGEDIFLMFGKETTGLPEAFMHEHEDQ 124

Query: 251 MAHLHMPG-IIKALNVSNAAAVALYITQNHFA 281
              L M    ++ LN+SN AA+ +Y      A
Sbjct: 125 CLRLPMDDTHVRCLNLSNCAAICIYEVLRQQA 156


>gi|323351026|ref|ZP_08086683.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66]
 gi|322122750|gb|EFX94459.1| TrmH family RNA methyltransferase [Streptococcus sanguinis VMC66]
          Length = 184

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYESL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     +   +S  ++K   +E          + G E KGL  +  +       
Sbjct: 82  EDFMEQMDG---RLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEFMRRHPEKAL 138

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 139 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 170


>gi|309812297|ref|ZP_07706052.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp.
           Ellin185]
 gi|308433602|gb|EFP57479.1| RNA methyltransferase, TrmH family, group 2 [Dermacoccus sp.
           Ellin185]
          Length = 171

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 5/138 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R A        +         S        G L++     +    D      + 
Sbjct: 13  NTGNIIRLAANVGASLHLVEP---LGFSMDARLLRRGGLDYHELADVHVHADVDAARAAC 69

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
             + + L++ +++  +     D   L+ G E  GL      T  A     + M    ++L
Sbjct: 70  PGRWLALTARARRRYDAVDYRDDDVLVFGCEATGLPDYLLATFSADERLRIPMRPDNRSL 129

Query: 264 NVSNAAAVALYITQNHFA 281
           N+ NA AV  Y       
Sbjct: 130 NLGNAVAVVAYEAWRQLG 147


>gi|332359116|gb|EGJ36937.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK49]
          Length = 184

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYESL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M    +     S  ++K   +E          + G E KGL  +  +       
Sbjct: 82  DDFMEQMDGHLYLI---SKFAEKVYSEENFAAKGSHYFMFGREDKGLPEEFMRRHPEKAL 138

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 139 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 170


>gi|237812913|ref|YP_002897364.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei MSHR346]
 gi|237505076|gb|ACQ97394.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei MSHR346]
          Length = 338

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 68  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 127

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 128 TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 183

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 184 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 220


>gi|227496022|ref|ZP_03926333.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM
           15434]
 gi|226834415|gb|EEH66798.1| SpoU family rRNA methyltransferase [Actinomyces urogenitalis DSM
           15434]
          Length = 155

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R +       +         + A L ++     +       ++  + L+++ 
Sbjct: 15  PGNSGAAIRLSANTG-SMLHLVDPLFDMDDAKLRRAGLDYHDLANTRVHASWQECLEQVP 73

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               +    ++ + +   +       AL+ G E  GL  +  E    +    + M    +
Sbjct: 74  G---RIFAFTAHTSQLYTEVEWRGDDALLFGPEPTGLPEEIMEDPRVSGRVRIPMMEGNR 130

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN++N+AAV LY       
Sbjct: 131 SLNLANSAAVGLYEAWRCLG 150


>gi|254524481|ref|ZP_05136536.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14]
 gi|219722072|gb|EED40597.1| tRNA/rRNA methyltransferase [Stenotrophomonas sp. SKA14]
          Length = 159

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +        E   L ++     E+       +L
Sbjct: 9   VILFQPEIPPNTGNVIRLCANTGAQLHLVEPLGFALEDKQLKRAGLDYHEYSRLQVHPDL 68

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-SMAH 253
             AL ++     +   LS+ +    +     D  A + G E +GL     +         
Sbjct: 69  DTALARIAPK--RLFALSTRASVRYDSVAFEDGDAFLFGPESRGLPQDVLDALPDGRRLR 126

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV +Y     
Sbjct: 127 LPMRPDNRSLNLSNTVAVVMYEAWRQ 152


>gi|121603783|ref|YP_981112.1| RNA methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120592752|gb|ABM36191.1| RNA methyltransferase, TrmH family, group 2 [Polaromonas
           naphthalenivorans CJ2]
          Length = 159

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        +   + ++     E+   +R ++ 
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAQVLRHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              L+       +   L++     + +        L+ G+E KGL P+ ++         
Sbjct: 64  PAFLESQQPPADRLFALTTQGAGSMYEARFLPGDWLVFGSETKGLAPEVRQSFALARRLK 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SN  AV ++     
Sbjct: 124 VPMLPGQRSLNLSNTVAVTVFEAWRQ 149


>gi|29654808|ref|NP_820500.1| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|153208685|ref|ZP_01946932.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830683|ref|YP_001597358.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|165919332|ref|ZP_02219418.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
           334]
 gi|212219235|ref|YP_002306022.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154]
 gi|29542076|gb|AAO91014.1| 23S rRNA methyltransferase [Coxiella burnetii RSA 493]
 gi|120575796|gb|EAX32420.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762550|gb|ABX78192.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
           331]
 gi|165916992|gb|EDR35596.1| RNA methyltransferase, TrmH family, group 2 [Coxiella burnetii RSA
           334]
 gi|212013497|gb|ACJ20877.1| 23S rRNA methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 152

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        +   L ++     E    I   +         
Sbjct: 12  PPNTGNIIRLCANAGASLHLIHPLGFSLDEKRLQRAGLDYREWATIIHYDHFEAFKSAFA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
               +    ++  K              + G E +GL  + +     +    + M    +
Sbjct: 72  EH--RIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQQIRIPMVTEKR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++N++N  ++ LY       
Sbjct: 130 SINLANTVSIILYEAWRQMG 149


>gi|57237733|ref|YP_178981.1| RNA methyltransferase [Campylobacter jejuni RM1221]
 gi|148926586|ref|ZP_01810268.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356389|ref|ZP_03223154.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|57166537|gb|AAW35316.1| RNA methyltransferase, TrmH family [Campylobacter jejuni RM1221]
 gi|145845280|gb|EDK22374.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345774|gb|EDZ32412.1| putative RNA methylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315058344|gb|ADT72673.1| Putative RNA methyltransferase [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 155

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   NL
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            + L +   +  +    ++ S+K            L  G+E  GL  +  +        +
Sbjct: 64  EEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFGSESYGLPMELMQLNWENAITI 123

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  +  Y     
Sbjct: 124 PMKSYGR--SLNLATSVGIISYEALRQ 148


>gi|240948513|ref|ZP_04752886.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240297021|gb|EER47592.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 159

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E +   +  N 
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDYHEFVDIQKYKNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSK---KPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            D L +      +   L++  +     +  E+ +    L+ G E +G+     +T   + 
Sbjct: 64  DDFLARAKPK--RLFALTTKGEPNHSDVHYELGDF---LMFGPESRGIPKAILDTLPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SN+ AV +Y     F 
Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQFG 149


>gi|223041990|ref|ZP_03612174.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
 gi|223017247|gb|EEF15675.1| putative tRNA/rRNA methyltransferase [Actinobacillus minor 202]
          Length = 159

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E +   +  N 
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFTWDDKKLKRSGLDYHEFVDIQKYKNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSK---KPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            D L +      +   L++  +     +  E+ +    L+ G E +G+     +T   + 
Sbjct: 64  DDFLARAKPK--RLFALTTKGEPNHSDVHYELGDF---LMFGPESRGIPKAILDTLPMSQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SN+ AV +Y     F 
Sbjct: 119 KIRIPMCKDSRSMNLSNSVAVVVYEAWRQFG 149


>gi|227487011|ref|ZP_03917327.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227093085|gb|EEI28397.1| SpoU family rRNA methyltransferase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 134

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 4/130 (3%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
                    +        E   L ++     +        +L   L  +   G +    +
Sbjct: 2   CAGTGAHLHLIRPLGFDLEDRHLRRAGLDYHDLARVTVHDSLDACLATL--PGARVFAFT 59

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAV 271
                 L          L+ G E  GL  +       T    + M    +++N+SNAAAV
Sbjct: 60  GHCSNMLFDVRFAPGDVLLFGTEPTGLTDEAMNHDRVTQKVRIPMLEGRRSMNLSNAAAV 119

Query: 272 ALYITQNHFA 281
           A Y       
Sbjct: 120 ATYEAWRQLG 129


>gi|1903046|emb|CAB07516.1| hypothetical 13.6 kd protein [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 114

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 2/98 (2%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLR- 241
            E +  +   +L +  +      F  I           +    ++    + G E  GL  
Sbjct: 10  WEFVNVVYHDSLEELFEAYKKGKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPK 69

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              Q        L M   +++LN+SN AA+ +Y     
Sbjct: 70  DLIQNNMDRCLRLPMTEHVRSLNLSNTAAILVYEALRQ 107


>gi|324991314|gb|EGC23247.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK353]
          Length = 167

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLKITYYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     +   +S  ++K   +E          + G E KGL  +  +       
Sbjct: 65  DDFMEQMDG---RLYLISKFAEKVYSEENFEAEGSHYFMFGREDKGLPEEFMRRHPEKAL 121

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|71737140|ref|YP_277002.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557693|gb|AAZ36904.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320326466|gb|EFW82518.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331759|gb|EFW87697.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330872585|gb|EGH06734.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330891655|gb|EGH24316.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 151

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+       +L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ASCLEKIGNP--RLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|322385965|ref|ZP_08059605.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
 gi|321269948|gb|EFX52868.1| TrmH family RNA methyltransferase [Streptococcus cristatus ATCC
           51100]
          Length = 183

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 21  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDISFYESL 80

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     +   +S  ++K   +E  +       + G E  GL  +  ++      
Sbjct: 81  DDFMKQMDG---RLYLISKFAEKVYSEENFSAEGPHYFMFGREDTGLPEEFMRQHPEKAL 137

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 138 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 169


>gi|25027214|ref|NP_737268.1| putative rRNA methylase [Corynebacterium efficiens YS-314]
 gi|23492495|dbj|BAC17468.1| putative rRNA methylase [Corynebacterium efficiens YS-314]
          Length = 173

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 5/170 (2%)

Query: 114 LALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           +A+  A +   T+  +    L +V D+   P N G  +R          +          
Sbjct: 2   IAVTFAIIPRSTIFPMSVPPLHVVFDNPVIPPNTGNAIRMCAGTGAHLHLVEPLGFDLTE 61

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL 233
             L ++     +       +N+ D    +     +    ++ +             AL+ 
Sbjct: 62  KHLRRAGLDYHDLADVTVHANIEDCFGALPG---RIFAFTTQATGWFTDITYQPGDALLF 118

Query: 234 GAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           G E  GL  +       T+   + M    +++N+SN+AAVA Y       
Sbjct: 119 GTEPTGLPHEHIIHPRVTAEVRIPMLEGRRSMNLSNSAAVATYEAWRQLG 168


>gi|313890845|ref|ZP_07824469.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120743|gb|EFR43858.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 182

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 7/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     E +      NL
Sbjct: 20  IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMRRAGLDYWEKLDVRFYDNL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D L K +      I   +      E      +   + G E KGL     ++       +
Sbjct: 80  EDFLDKCNGQ-LHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLPEAFMRKYPEKALRI 138

Query: 255 HMPG-IIKALNVSNAAAVAL--YITQNHFA 281
            M    +++LN+SN   V +  Y      A
Sbjct: 139 PMNDQHVRSLNLSNT--VCMVVYEALRQQA 166


>gi|300692668|ref|YP_003753663.1| tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum PSI07]
 gi|299079728|emb|CBJ52404.1| putative tRNA/rRNA methyltransferase (spoU) [Ralstonia solanacearum
           PSI07]
          Length = 175

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A + ++     E+      ++ 
Sbjct: 23  VVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVHASW 82

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA----TSM 251
              L+       +   L++    P            + G+E +GL  +    A    +  
Sbjct: 83  EAFLRDAQPDPARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEE--RRAWFPPSQR 140

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    ++LN+SN  AV ++     
Sbjct: 141 IRLPMRPDNRSLNLSNTVAVVVFEAWRQ 168


>gi|253582260|ref|ZP_04859483.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251835799|gb|EES64337.1| 23S rRNA methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 152

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P+N G I RS+V  +    +        +   L ++       +      +  D +    
Sbjct: 11  PYNTGNIGRSSVLTNTTLHLIKPLGFSLDEKQLKRAGLDYWHLVDLKIWESYEDFIN--G 68

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGIIKA 262
           +        ++ +K+            ++ G E +G+  +   + A     + M  + ++
Sbjct: 69  NPDAVIYYATTKTKQRYTDIKFKKNDFVMFGPESRGIPEEILNKNADHCITIPMIDMGRS 128

Query: 263 LNVSNAAAVALYITQNH 279
           LN+SN+AA+ LY     
Sbjct: 129 LNLSNSAAIILYEALRQ 145


>gi|284801266|ref|YP_003413131.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
 gi|284994408|ref|YP_003416176.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
 gi|284056828|gb|ADB67769.1| hypothetical protein LM5578_1016 [Listeria monocytogenes 08-5578]
 gi|284059875|gb|ADB70814.1| hypothetical protein LM5923_0970 [Listeria monocytogenes 08-5923]
          Length = 169

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++     +++      +L
Sbjct: 5   IVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKMLKRAGLDYWDNVKLSYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ----ETA 248
            +  +   + G +   ++   +        +D       + G E  GL         E  
Sbjct: 65  DEFFE--KNEGGEFYYITKFGRHVYSDINYSDTNKDYFFVFGKETTGLPDALLQENEENC 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M   I++LN+SN AA+  Y     
Sbjct: 123 ---LRIPMTDHIRSLNLSNTAAILAYEALRQ 150


>gi|167903380|ref|ZP_02490585.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei NCTC 13177]
          Length = 303

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|134277341|ref|ZP_01764056.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 305]
 gi|134250991|gb|EBA51070.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 305]
          Length = 303

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|76809515|ref|YP_334074.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|254261703|ref|ZP_04952757.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710a]
 gi|76578968|gb|ABA48443.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710b]
 gi|254220392|gb|EET09776.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1710a]
          Length = 346

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 68  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 127

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 128 TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 183

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 184 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 220


>gi|308189701|ref|YP_003922632.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|319776885|ref|YP_004136536.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
 gi|238809672|dbj|BAH69462.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624443|gb|ADN68748.1| spoU class tRNA/rRNA methylase [Mycoplasma fermentans JER]
 gi|318037960|gb|ADV34159.1| tRNA/rRNA methyltransferase [Mycoplasma fermentans M64]
          Length = 177

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHS 204
           N G I+R+  A      I        +   L++ A+G L   I +   ++  D  +K  +
Sbjct: 14  NTGNIIRTCFALGAKLHIIKPIGFDLDPKYLSRPAAGRLLSDIQHEVHASYKDFYEKYKN 73

Query: 205 WGF---QTIGLSSDSKKPLEQEIKNDKIALIL-GAEGKGLRPKTQE-TATSMAHLHMPGI 259
                    GL + +    ++E K +K   I+ G E  G+  +  +    +   + M   
Sbjct: 74  KNIFYLTRYGLKTYTDVDFKKEYKKNKEVWIMFGKESTGIDKEILQTHLENCLRIPMMSE 133

Query: 260 IKALNVSNAAAVALYITQNHF 280
           ++++N++N  A+  +      
Sbjct: 134 MRSINLANTVAIVGFEIMRQL 154


>gi|315639717|ref|ZP_07894856.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
 gi|315484494|gb|EFU74951.1| RNA methyltransferase [Enterococcus italicus DSM 15952]
          Length = 190

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 4/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++     + +      +L D L  + 
Sbjct: 33  PANTGNISRTCAATNAPLHLIEPLGFSTDDKHLKRAGLDYWDAVDITYHKSLADFLTYLG 92

Query: 204 SWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GII 260
                 +   ++ +   +      +    + G E  GL     +E       + M    +
Sbjct: 93  ERPLHLVTKFANQTYSEVNYADNQEHF-FLFGKETTGLPEDFMRENVEKCIRIPMNDEHV 151

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN+SN  A+ LY     
Sbjct: 152 RSLNLSNTVALVLYEALRQ 170


>gi|182626609|ref|ZP_02954355.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens D str. JGS1721]
 gi|177908089|gb|EDT70662.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens D str. JGS1721]
          Length = 153

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    I        +   L ++       +      + 
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D ++K      +    ++ ++   ++    +   ++ G E  G+       A     + 
Sbjct: 65  EDFMKKYGDK--KIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVPENV-HNAHHGIKVP 121

Query: 256 MPGIIK-ALNVSNAAAVALYITQNHFA 281
           M      +LN+SN  A+  Y       
Sbjct: 122 MINTTTRSLNLSNTVAIIAYEALRQIG 148


>gi|154707421|ref|YP_001423885.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111]
 gi|154356707|gb|ABS78169.1| 23S rRNA methyltransferase [Coxiella burnetii Dugway 5J108-111]
          Length = 152

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        +   L ++     E    I   +         
Sbjct: 12  PPNTGNIIRLCANAGASLYLIHPLGFSLDEKRLQRAGLDYREWATIIHYDHFEAFKSAFA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
               +    ++  K              + G E +GL  + +     +    + M    +
Sbjct: 72  EH--RIFACTTKGKTIYADVHYRSSDVFLFGPETRGLPAEIRTQFPDSQQIRIPMVTEKR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++N++N  ++ LY       
Sbjct: 130 SINLANTVSIILYEAWRQMG 149


>gi|167739289|ref|ZP_02412063.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 14]
 gi|167916848|ref|ZP_02503939.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 112]
 gi|254184411|ref|ZP_04891001.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1655]
 gi|254297077|ref|ZP_04964530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 406e]
 gi|157807712|gb|EDO84882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 406e]
 gi|184214942|gb|EDU11985.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1655]
          Length = 301

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|324993671|gb|EGC25590.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK405]
 gi|324995017|gb|EGC26930.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK678]
 gi|325696341|gb|EGD38232.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK160]
 gi|327462940|gb|EGF09261.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1]
          Length = 184

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYESL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     +   +S  ++K   +E          + G E KGL  +  +       
Sbjct: 82  DDFMEQMDG---RLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEFMRRHPEKAL 138

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 139 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 170


>gi|120556073|ref|YP_960424.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120325922|gb|ABM20237.1| RNA methyltransferase, TrmH family, group 2 [Marinobacter aquaeolei
           VT8]
          Length = 154

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        E   + ++     E+       + 
Sbjct: 4   VVLYEPEIPPNTGNIIRLCANTGCQLHLIEPLGFSLEDKQMRRAGLDYSEYATVKIHPDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L        +  GL++   +   +    D   L+ G E +GL    +    A     
Sbjct: 64  DSFLAT--EQPSRLFGLTTKGSRHYHEVAFRDGDYLMFGPETRGLPEDVRNGLPAEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    ++LN+SN AA+ +Y       
Sbjct: 122 VPMRPESRSLNLSNTAALVVYEAWRQLG 149


>gi|332671773|ref|YP_004454781.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332340811|gb|AEE47394.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 154

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A        +          A L ++     +    +  ++    L  + 
Sbjct: 12  PGNTGNAIRMAAGTGATLHLVEPLGFDLSEARLRRAGLDYHDLAHVVVHASFDALLDVL- 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
             G + +  ++ +          +   L+ G E  GL          T    + M    +
Sbjct: 71  -PGSRVLAFTTQATTSFADVGYREDDVLLFGPEPTGLPADVLAHPRVTDQLRIPMLPGRR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++N+SNAAAVA Y       
Sbjct: 130 SMNLSNAAAVATYEAWRQLG 149


>gi|254191444|ref|ZP_04897948.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157939116|gb|EDO94786.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 309

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|157870265|ref|XP_001683683.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126749|emb|CAJ05174.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 518

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 65/204 (31%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYIRIS 193
           +VL  +  P N+G +LR+A     D  +     +      + +++ G      +      
Sbjct: 286 LVLVGLRIPSNVGTLLRAAADMGYDAAVLVS-CADPTQEKVLRASDGTALSPTLRIYETE 344

Query: 194 NLTDALQKMH--------------------------SWGFQTI---------------GL 212
               A   +                           +  F                    
Sbjct: 345 TTEQACVSLLSSIAAQHNLMPFLAVPSQEVEPAFEVAKRFHVYNAKNKEASTSQVGGGAA 404

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT---------SMAHLHMPGII-KA 262
           +  S        +     +ILG+E +GLR                  +  L +P  +  +
Sbjct: 405 AGHSDGLCAPPPRQLGAMVILGSEAQGLR-------DLNGRWGVPYQLVTLPLPNPVVDS 457

Query: 263 LNVSNAAAVALYITQ----NHFAK 282
            NVS A +V +++ +    +HF +
Sbjct: 458 FNVSVAGSVLMHLFRPSAASHFTR 481


>gi|256823506|ref|YP_003147469.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256797045|gb|ACV27701.1| RNA methyltransferase, TrmH family, group 2 [Kangiella koreensis
           DSM 16069]
          Length = 153

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E        N 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIKPLGFEIDDKKMRRAGLDYHEWAQVKTHENY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            + L   +    +  GLS+ +K    Q    D   L+ G E +GL      +    +  +
Sbjct: 64  QEFLN--NEQPKRLFGLSTKAKHYFHQIAYQDGDYLMFGPETRGLPNHILNDIGEQLLRI 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN+SN  A+  Y     
Sbjct: 122 PMRPDSRSLNLSNTVAIVTYEVLRQ 146


>gi|226229043|ref|YP_002763149.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226092234|dbj|BAH40679.1| RNA methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 165

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H     N G   R+ +A      +            + ++     EH+      + 
Sbjct: 5   VVLVHPEIHWNTGNAGRTCLATGATLHLIEPLGFSLGEREVRRAGLDYWEHVDVRVWPDW 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQET-ATSMA 252
                ++ + G +    S+ + +        +   I LI G E  GL    +   A  M 
Sbjct: 65  DTFEAQLPTLG-EPYFFSTKATQLFWDAPLGEPDHIVLIFGRETAGLPEPVRTRWAHRMV 123

Query: 253 HLHMPG-IIKALNVSNAAAVALYITQNH 279
            + +    +++LN+S + AVA+Y     
Sbjct: 124 AMPITSPHVRSLNLSTSVAVAIYERLRQ 151


>gi|53723764|ref|YP_103289.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|254209320|ref|ZP_04915666.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           JHU]
 gi|52427187|gb|AAU47780.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 23344]
 gi|147750093|gb|EDK57164.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           JHU]
          Length = 306

 Score = 63.9 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 36  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 95

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 96  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 151

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 152 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188


>gi|311694375|gb|ADP97248.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
          Length = 287

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 19/166 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             Q+ +VL   +   NIGA+ R+        +      S  + A  A+ A+GA + +   
Sbjct: 15  QDQIRIVLVETSHSGNIGAVARAMKNMGLGNLWLVNPSSFPDEASYAR-AAGASDVLDSA 73

Query: 191 RI-SNLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAE 236
            + S+L +AL          +G S+  +K                +   +  +A++ G E
Sbjct: 74  HVVSSLDEALADC----VLVMGTSARGRKVPWPVCAPPEAAAAAAEHAGSGPVAMVFGRE 129

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             GL     +      H+       +LN++ A  V  Y  + ++ +
Sbjct: 130 NHGLSNDELQRCHYHIHIPSNPDYSSLNLAMAVQVMCYELRMYYLR 175


>gi|290954068|ref|ZP_06558689.1| hypothetical protein FtulhU_07312 [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312534|ref|ZP_06803296.1| hypothetical protein FtulhU_07304 [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 67

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +A L M G + +LNVS A  +ALY T    
Sbjct: 31  CDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 63


>gi|121600581|ref|YP_993479.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124386415|ref|YP_001029091.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126449337|ref|YP_001080987.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|167001789|ref|ZP_02267581.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           PRL-20]
 gi|167894996|ref|ZP_02482398.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 7894]
 gi|167919632|ref|ZP_02506723.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei BCC215]
 gi|238561600|ref|ZP_00441709.2| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           GB8 horse 4]
 gi|254178315|ref|ZP_04884970.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 10399]
 gi|254200241|ref|ZP_04906607.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           FMH]
 gi|254358011|ref|ZP_04974284.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           2002721280]
 gi|121229391|gb|ABM51909.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           SAVP1]
 gi|124294435|gb|ABN03704.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           NCTC 10229]
 gi|126242207|gb|ABO05300.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           NCTC 10247]
 gi|147749837|gb|EDK56911.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           FMH]
 gi|148027138|gb|EDK85159.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           2002721280]
 gi|160699354|gb|EDP89324.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           ATCC 10399]
 gi|238524188|gb|EEP87622.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           GB8 horse 4]
 gi|243062474|gb|EES44660.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia mallei
           PRL-20]
          Length = 303

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|89256903|ref|YP_514265.1| rRNA methylase [Francisella tularensis subsp. holarctica LVS]
 gi|169656715|ref|YP_001429146.2| hypothetical protein FTA_1715 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|89144734|emb|CAJ80065.1| rRNA methylase [Francisella tularensis subsp. holarctica LVS]
 gi|164551783|gb|ABU62190.2| hypothetical protein FTA_1715 [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 63

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +A L M G + +LNVS A  +ALY T    
Sbjct: 27  CDFLAKLPMLGEVSSLNVSVATGIALYETVRQR 59


>gi|332994658|gb|AEF04713.1| putative tRNA/rRNA methyltransferase [Alteromonas sp. SN2]
          Length = 154

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R ++L
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANSGFMLHLIEPLGFEWDDKRVRRAGLDYHEFAHVKRHASL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              ++       +    ++  K            AL+ G E +GL     +         
Sbjct: 64  DAYIESEKPS--RIFACTTKGKAFHSDAQYKKGDALLFGPETRGLPDDVIDALPPEQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA +V +Y +     
Sbjct: 122 IPMLPDSRSMNLSNAVSVFVYESWRQLG 149


>gi|313141828|ref|ZP_07804021.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130859|gb|EFR48476.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 157

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +            L ++      H+      NL
Sbjct: 5   IVLHQPRIPQNTGNIGRLCFASDSVLHLIHPLGFSITQKELKRAGMDYWNHLEVYEWENL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
           +  ++           L++ S+ P           L  G E  GL              +
Sbjct: 65  SSFMESSLLEIPHCY-LTTKSQTPYYNAPLKKGAYLHFGREDAGLDSTLLSHYKDYCYTI 123

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHF 280
            M    ++LN++ +  + LY    Q  F
Sbjct: 124 PMQNNARSLNLATSVGIVLYEGIRQRDF 151


>gi|224418296|ref|ZP_03656302.1| rRNA methylase (SpoU class) [Helicobacter canadensis MIT 98-5491]
 gi|253827619|ref|ZP_04870504.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
 gi|253511025|gb|EES89684.1| putative rRNA methylase [Helicobacter canadensis MIT 98-5491]
          Length = 163

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A      +            L ++      H+      NL
Sbjct: 11  IVLHQPRIPQNTGNIGRLCFASDSVLHLIHPLGFSITQKELKRAGMDYWNHLEVYEWENL 70

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
           +  ++           L++ S+ P           L  G E  GL              +
Sbjct: 71  SSFMESSLLEIPHCY-LTTKSQTPYYNAPLKKGAYLHFGREDAGLDSTLLSHYKDYCYTI 129

Query: 255 HMPGIIKALNVSNAAAVALYI--TQNHF 280
            M    ++LN++ +  + LY    Q  F
Sbjct: 130 PMQNNARSLNLATSVGIVLYEGIRQRDF 157


>gi|110803755|ref|YP_698630.1| rRNA methylase-like protein cspR [Clostridium perfringens SM101]
 gi|110684256|gb|ABG87626.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           perfringens SM101]
          Length = 153

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    I        +   L ++       +      + 
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D ++K      +    ++ ++   ++    ++  ++ G E  G+       A     + 
Sbjct: 65  EDFMKKYGDK--KIYLSTTHAEDHYDEVKYEEEAFIMFGRESAGVPEDV-HNAHHGIKVP 121

Query: 256 MPGIIK-ALNVSNAAAVALYITQNHFA 281
           M      +LN+SN  A+  Y       
Sbjct: 122 MINTTTRSLNLSNTVAIIAYEALRQIG 148


>gi|22299659|ref|NP_682906.1| putative tRNA/rRNA methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295843|dbj|BAC09668.1| tll2116 [Thermosynechococcus elongatus BP-1]
          Length = 250

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 16/153 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL       NIG++ R         +         +  +  + A  A + +    +++ 
Sbjct: 9   IVLVEPQGEINIGSVARVMKNMGLQQLWMVSPRCDPKGELAQRWAVHAEDVLQQANVTDS 68

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-----------IALILGAEGKGLRPK 243
           L  AL        +           L       +            AL+ G E +GL   
Sbjct: 69  LEAALADCQ----RVFATVGRDVADLALPCWTPRQAAPQLLAVVQSALVFGREDRGLTNA 124

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
             E A  +  +       +LN++ A AV  Y  
Sbjct: 125 ELECAHGLVKIPTANTYPSLNLAQAVAVCCYEL 157


>gi|86152124|ref|ZP_01070336.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124400|ref|YP_004066404.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840909|gb|EAQ58159.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018122|gb|ADT66215.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 155

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   NL
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            + L +   +  +    ++ S+K            L  G+E  GL  +  +        +
Sbjct: 64  EEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFGSESYGLPVELMQLNWENAITI 123

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  +  Y     
Sbjct: 124 PMKSYGR--SLNLATSVGIISYEALRQ 148


>gi|330723254|gb|AEC45624.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           hyorhinis MCLD]
          Length = 175

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHS 204
           N G I+RS  A +    I        E   L + A+G L   I +   SN  + ++K   
Sbjct: 14  NTGNIIRSCFATNAKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEIHSNYDEFVKKYGD 73

Query: 205 WGF---QTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGI 259
                       + S    +Q    N+ I L+ G E  G+      +   +   + M   
Sbjct: 74  KKIFYITRYATQTYSDVDFKQIRDNNEDIFLMFGTESTGIPKSILSKNLNTCLRIPMQEK 133

Query: 260 IKALNVSNAAAVALYITQNHFA 281
            ++LN++N+  + +Y       
Sbjct: 134 SRSLNLANSVVIVIYEVLRQLN 155


>gi|304373120|ref|YP_003856329.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           hyorhinis HUB-1]
 gi|304309311|gb|ADM21791.1| Putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           hyorhinis HUB-1]
          Length = 175

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHS 204
           N G I+RS  A +    I        E   L + A+G L   I +   SN  + ++K   
Sbjct: 14  NTGNIIRSCFATNAKLHIIKPIAFELEPRYLKRPAAGKLLSDIEHEIHSNYDEFVKKYGD 73

Query: 205 WGF---QTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGI 259
                       + S    +Q    N+ I L+ G E  G+      +   +   + M   
Sbjct: 74  KKIFYITRYATQTYSDVDFKQIRDNNEDIFLMFGTESTGIPKSILSKNLNTCLRIPMQEK 133

Query: 260 IKALNVSNAAAVALYITQNHFA 281
            ++LN++N+  + +Y       
Sbjct: 134 SRSLNLANSVVIVIYEVLRQLN 155


>gi|315223322|ref|ZP_07865183.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           anginosus F0211]
 gi|315187754|gb|EFU21508.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           anginosus F0211]
          Length = 170

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 15/152 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 8   IVLFEPQIPQNTGNIARTCAATNSPLHIILPMGFPIDDRKMKRAGLDYWDKLDITYYDNL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPK-TQETATS 250
            + + KM     Q   +S  ++K   +E      A     + G E KGL     +  +  
Sbjct: 68  EEFMSKMDG---QLYLISKFAEKVYAEENFA--TAGNHYFMFGREDKGLPEDFMRAHSEK 122

Query: 251 MAHLHMP-GIIKALNVSNAAAVAL--YITQNH 279
              + M    +++LN+SN   V +  Y     
Sbjct: 123 ALRIPMNDEHVRSLNLSNT--VCMMVYEALRQ 152


>gi|307728345|ref|YP_003905569.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1003]
 gi|307582880|gb|ADN56278.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1003]
          Length = 156

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A L ++     E+      +N 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLEDAKLRRAGLDYHEYAQMNVHANW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
              + K      +    ++       +         + GAE +GL     +  T      
Sbjct: 64  AAFIAKESPDASRMFAFTTRGSGRFHEHAFKPGDWFVFGAETRGLPDAVLDQFTGEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  A+ ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAIVVFEAWRQ 149


>gi|108798157|ref|YP_638354.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119867253|ref|YP_937205.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|126433816|ref|YP_001069507.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
 gi|108768576|gb|ABG07298.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. MCS]
 gi|119693342|gb|ABL90415.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. KMS]
 gi|126233616|gb|ABN97016.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium sp. JLS]
          Length = 179

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R      C+  +            L ++     +        +L  A   +   
Sbjct: 14  NTGNAIRMVAGTGCELHLVRPLGFDLSEPKLRRAGLDYHDLASVTVHDDLPAAWDAV--L 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
                  ++ +              L+ G E  GL  +T      T+   + M    ++L
Sbjct: 72  PASVYAFTAHATVSFADVDYRPGDVLMFGPEPTGLDAETLADPHITAQVRIPMLAGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAVA+Y     
Sbjct: 132 NLSNAAAVAVYEAWRQ 147


>gi|21241004|ref|NP_640586.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|294665610|ref|ZP_06730889.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|21106293|gb|AAM35122.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|292604613|gb|EFF47985.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 158

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +            L ++     E+ P    ++L
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLQVHADL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
             AL  +     +   LS+ S    +     D  A + G E +GL  +  E+        
Sbjct: 68  PSALAAIAPK--RVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 126 LPMRPDNRSLNLSNTVAVMVFEAWRQ 151


>gi|327470430|gb|EGF15886.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK330]
          Length = 167

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYESL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D ++++    +     S  ++K   +E          + G E KGL  +  +       
Sbjct: 65  DDFMEQIDGHLYLI---SKFAEKVYSEENFAAKGSHYFMFGREDKGLPEEFMRRHPEKAL 121

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 122 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|226198991|ref|ZP_03794554.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929091|gb|EEH25115.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei Pakistan 9]
          Length = 309

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|126454106|ref|YP_001066857.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|167846415|ref|ZP_02471923.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei B7210]
 gi|242315889|ref|ZP_04814905.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106b]
 gi|126227748|gb|ABN91288.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106a]
 gi|242139128|gb|EES25530.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 1106b]
          Length = 311

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|293393588|ref|ZP_06637898.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
 gi|291423923|gb|EFE97142.1| TrmH family RNA methyltransferase [Serratia odorifera DSM 4582]
          Length = 157

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P +   L ++     E     R ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHVIEPMGFPWDDKRLRRAGLDYHEFTRVKRHADY 63

Query: 196 TDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +            T G  + S    +Q        L+ G E +GL  +         
Sbjct: 64  AAFMASEQPQRLFALTTKGTPAHSAVNYQQGDY-----LLFGPETRGLPAEILNALPPQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA AV +Y      
Sbjct: 119 KIRIPMQAQSRSMNLSNAVAVVVYEAWRQL 148


>gi|302873611|ref|YP_003842244.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
 gi|307688207|ref|ZP_07630653.1| RNA methyltransferase, TrmH family, group 2 [Clostridium
           cellulovorans 743B]
 gi|302576468|gb|ADL50480.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium cellulovorans 743B]
          Length = 160

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+ V  +    +            L ++     +        + 
Sbjct: 10  IVLYQPEIPQNTGNIVRTCVLTNSKLHLIRPLGFEVTDKQLRRAGLDYWKDADISYYDSF 69

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +  +K     F     ++ + K  ++        ++ G E  GL  + + +   ++  +
Sbjct: 70  EELREKFKDRTF--YYSTTKATKYYDEVDFKQGDFIVFGRESSGLPDEIRNSEPDNLIRI 127

Query: 255 HMPGIIK----ALNVSNAAAVALYITQNHFA 281
            M   +K    +LN+SN  ++  Y       
Sbjct: 128 PM---VKTSLRSLNLSNTVSIVSYEATRQIG 155


>gi|317488202|ref|ZP_07946773.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
 gi|316912707|gb|EFV34245.1| RNA methyltransferase [Eggerthella sp. 1_3_56FAA]
          Length = 156

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 13/150 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-- 193
           +VL     P N G I R+         +            LA++     + +  +R    
Sbjct: 7   IVLVEPEIPQNTGNIARTCACTGARLHLVEPMGFRLTQKNLARAGCDYWDEVDIVRWPCA 66

Query: 194 ---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
                  A  ++H +       +  + +        +   L+ G E +GL     E  A 
Sbjct: 67  EAFFEAHAADELHLF-------TGQACRGFGDVAYGEGSFLVFGRESRGLPLGLIEAYAN 119

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               + M   +++LN+SNA AVA Y     
Sbjct: 120 RCVRIPMREGLRSLNLSNAVAVAAYEALRQ 149


>gi|289623912|ref|ZP_06456866.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651133|ref|ZP_06482476.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|289672258|ref|ZP_06493148.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae FF5]
 gi|298484786|ref|ZP_07002886.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|302188528|ref|ZP_07265201.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           syringae 642]
 gi|298160640|gb|EFI01661.1| tRNA (cytosine34-2'-O-)-methyltransferase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|330868936|gb|EGH03645.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330900934|gb|EGH32353.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330954785|gb|EGH55045.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae Cit 7]
 gi|330980654|gb|EGH78757.1| RNA methyltransferase TrmH, group 2 [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 151

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+      ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ASCLEKIGNP--RLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|227502757|ref|ZP_03932806.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|306835344|ref|ZP_07468367.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|227076487|gb|EEI14450.1| SpoU family rRNA methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|304568777|gb|EFM44319.1| TrmH family RNA methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 156

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 6/153 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           SQL +V D+   P N G  +R+A        +        +   L ++     +      
Sbjct: 2   SQLHIVFDNPVIPTNTGNAIRTAAVTGASLHLIEPLGFNFDDKHLKRAGLDYHDLADVQI 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---A 248
             +    ++ +   G +    ++ + K        D   L+ G E  GL  +        
Sbjct: 62  HKDFDACMEAL--PGARVFAFTTHTDKWFTDVEYQDGDVLLFGTEPTGLPDEHVNHPRIT 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                + M    +++N+SN+A+ A++       
Sbjct: 120 DQ-VRIPMVPARRSMNLSNSASTAVFEAWRQLG 151


>gi|322377138|ref|ZP_08051630.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
 gi|321281851|gb|EFX58859.1| RNA methyltransferase, TrmH family [Streptococcus sp. M334]
          Length = 180

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 18  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLEIYFYESL 77

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D + +M     +   +S  ++K   +     ++    + G E KGL     +E      
Sbjct: 78  EDFMSQMEG---KLYLISKFAEKVYSEVDLSTDENHYFLFGREDKGLPEDFMREHPEKAL 134

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 135 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQNFA 166


>gi|54022887|ref|YP_117129.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54014395|dbj|BAD55765.1| putative ribosomal RNA methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 154

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V      P N G  +R      C   +          A L ++     +        +L
Sbjct: 4   LVFHEPRIPPNTGNAIRLVAGTGCALHLIEPLGFDLSEAKLRRAGLDYHDLASVTVHESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
             A + +     +    ++                L+ G E  GL  +       T    
Sbjct: 64  AAAWEALAPE--RVYAFTTQGSTRYTDIAYRPGDVLLFGTEPTGLPAEVLADPHITDRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    +++N+SNAAAV +Y     
Sbjct: 122 IPMLPGRRSMNLSNAAAVTVYEAWRQ 147


>gi|323451439|gb|EGB07316.1| hypothetical protein AURANDRAFT_71849 [Aureococcus anophagefferens]
          Length = 3487

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 5/138 (3%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G + RSA         +               A  A + +P  R  +  D   K   
Sbjct: 734 GNDGVLWRSAAQLGAAFSFSVGARFGRLDGAT--DAIDAWKTVPNFRYDSFADF-AKSSP 790

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G   + +    + PLE  +  D+    LGAE  G+          +  L       + N
Sbjct: 791 RGAAWVAVEMGGE-PLETFVHPDRAVYFLGAEDHGVPKDVLRACRHVVSLPAARSA-SYN 848

Query: 265 VSNAAAVALYITQNHFAK 282
           V+ A A+ +Y   +   +
Sbjct: 849 VAVAGALVMYDRLSKRNR 866


>gi|295676879|ref|YP_003605403.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1002]
 gi|295436722|gb|ADG15892.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1002]
          Length = 276

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIP-YIRIS 193
           VL   + P N+GA  R+        ++      P+          ASGA + +     + 
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAMASGADDVLASVHVVP 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
           +L DAL  +H     +I L++  ++                 E  + +IAL+ G E  GL
Sbjct: 85  SLADALAGVH----WSIALTARLREYGPPQWTPRAAAAAAHAEALHGEIALVFGNERTGL 140

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 141 SNEDVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 177


>gi|120554047|ref|YP_958398.1| RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120323896|gb|ABM18211.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
           VT8]
          Length = 287

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 17/177 (9%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            P L        + Q+ +VL       NIGA+ R+        +      S  + A  A+
Sbjct: 5   KPALPVESTDTYHDQVRIVLVETTHSGNIGAVARAMKNMGLGNLWLVNPKSFPDEASYAR 64

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------ 226
           ++S +        +S+L +AL          +G S+  +K     I              
Sbjct: 65  ASSASDVLDRAQVVSSLDEALSDC----VLVMGTSARGRKVPWPVISPPQAAVTAAENSA 120

Query: 227 -DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +AL+ G E  GL  +  +      H+       +LN++ A  V  Y  + H+ +
Sbjct: 121 RGPVALVFGRESNGLSNEELQRCHYHIHIPSNPDYSSLNLAMAVQVVCYELRMHYLR 177


>gi|28872435|ref|NP_795054.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855690|gb|AAO58749.1| RNA methyltransferase, TrmH family, group 2 [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 151

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+      ++L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHADL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L+K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ASCLEKIGNP--RLFAFTTKGSRPFHDASFAPGDAFLFGPESRGLPADILDSLSSEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|305663452|ref|YP_003859740.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
 gi|304378021|gb|ADM27860.1| tRNA/rRNA methyltransferase (SpoU) [Ignisphaera aggregans DSM
           17230]
          Length = 237

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI---PYIRI 192
           ++L       N+G I+R    F  D +I  K      S  + + A+    +I        
Sbjct: 4   VILVGTEGEINLGFIVRLCRNFDVDELILVKPQIDPFSDEVRRFAANGAIYIDSGKVKIY 63

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKGLRP 242
            NL DAL+ +   G  +  +  D    + + I          K   IA++ G E  GL  
Sbjct: 64  ENLDDALRGIGISGCTSSVIDVDGGDIVRKAIELEEFANIASKYSSIAVVFGRESVGLTR 123

Query: 243 KTQETATSMAHLHMPGIIKA------LNVSNAAAVALYITQNHFAK 282
           +       + H+       +      LN+S+A A+ LY+      K
Sbjct: 124 EEISKCDFLVHIA------SNPEYPVLNLSHAVAITLYMLYKVLRK 163


>gi|289664985|ref|ZP_06486566.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669885|ref|ZP_06490960.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 158

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +            L ++     E+ P    ++L
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLKVHADL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
             AL  +     +   LS+ S    +    +D  A + G E +GL  +  E+        
Sbjct: 68  PSALAAIAPK--RVFALSTRSTVRYDTPQFSDGDAFLFGPETRGLPTEVLESIPPQHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 126 LPMRPDNRSLNLSNTVAVMVFEAWRQ 151


>gi|323524635|ref|YP_004226788.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323381637|gb|ADX53728.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1001]
          Length = 156

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 2/148 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A L ++     E+      +N 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVHANW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              + K      +    ++                 + GAE +GL     E   +     
Sbjct: 64  AAFIAKESPEPSRMFAFTTRGSGRFHDHAFAAGDWFVFGAETRGLPDSVLEQFGSEERVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN  A+ ++       
Sbjct: 124 LPMRPGNRSLNLSNTVAIVVFEAWRQMG 151


>gi|260584367|ref|ZP_05852114.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
 gi|260157885|gb|EEW92954.1| TrmH family RNA methyltransferase [Granulicatella elegans ATCC
           700633]
          Length = 169

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +  +    ++   L ++       +      +L
Sbjct: 6   IVLFEPQIPANTGNIARTCAATNSPLHLVGQLGFSTDDKHLKRAGLDYWNDVDITYHDSL 65

Query: 196 TDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAH 253
              ++ + +     I   ++ +   ++     ++   I G E  GL  +  +E   S   
Sbjct: 66  EAFMEYLGNRPIYLITKFANHTYDEVDLAKDEEQF-FIFGKETTGLPEEFMREHEESCLR 124

Query: 254 LHMPG-IIKALNVSNAAAVALYI--TQNHF 280
           L M    +++LN+SN AA+ +Y    Q  F
Sbjct: 125 LPMNDTHVRSLNLSNTAAIVVYEALRQQQF 154


>gi|168702027|ref|ZP_02734304.1| RNA methyltransferase, TrmH family, group 1 [Gemmata obscuriglobus
           UQM 2246]
          Length = 269

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 12/159 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   N+GA  R    F    ++    Y+ +      + A+  L  +   R+  +
Sbjct: 10  VVLVRPHYAGNLGATARVMRNFGLSDLVLVAPYASTGDLDARRMATHGLAVLDAARVVPD 69

Query: 195 LTDALQK---------MHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           L DAL           + +  F+  TIG +++    L    +   +A++ G E  GL  +
Sbjct: 70  LGDALSDCVFSLATSSLTAGVFRSGTIGTAAEQMPELLAAAEAGPVAVVFGPEPHGLSNE 129

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                  + ++       +LN++ A A+  Y  +  ++K
Sbjct: 130 EIGRCHGLVNVPSDPASGSLNLAQAVAICCYEFRKAWSK 168


>gi|194398548|ref|YP_002038556.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
 gi|194358215|gb|ACF56663.1| rRNA/tRNA methylase [Streptococcus pneumoniae G54]
          Length = 130

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 31/148 (20%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K  H  K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLHQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A  P       +    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---AAFPQTV---WISEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIG 148
                 D  +     + L+ V DP N+G
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGNVG 117


>gi|33151545|ref|NP_872898.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33147765|gb|AAP95287.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 159

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E +   + ++ 
Sbjct: 4   IVLFEPEIPQNSGNIIRLCANCGFRLHMIEPFGFTWDDKKLKRSGLDYHEFVDIQKYTHF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            D L +      +   L++  +    Q        L+ G E +G+     ET   +    
Sbjct: 64  DDFLARAKPK--RLFALTTKGEANHSQVQYEQGNFLMFGPESRGIPTAILETLPMSQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN  AV +Y     F 
Sbjct: 122 VPMCKDSRSMNLSNTVAVVVYEAWRQFG 149


>gi|21229687|ref|NP_635604.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766564|ref|YP_241326.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188989626|ref|YP_001901636.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21111170|gb|AAM39528.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571896|gb|AAY47306.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731386|emb|CAP49561.1| RNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 158

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +            L ++     E+       +L
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYARLQVHPDL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
             AL  +     +   LS+ S    +     D  A + G E +GL  +  E+        
Sbjct: 68  PTALATLAPK--RVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 126 LPMRPDNRSLNLSNTVAVMVFEAWRQ 151


>gi|311277468|ref|YP_003939699.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae
           SCF1]
 gi|308746663|gb|ADO46415.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter cloacae
           SCF1]
          Length = 157

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 45/151 (29%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E    +R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRHHDY 63

Query: 196 TDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
                           T G  + S              L+ G E +GL     +   A  
Sbjct: 64  AAFADAEKPQRLFALTTKGTPAHSAVSYRDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|322517473|ref|ZP_08070346.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
 gi|322123955|gb|EFX95514.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
           49124]
          Length = 179

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 8/151 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 16  IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 75

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + K H+     +   +D     E     +    + G E  GL     +E       +
Sbjct: 76  ADFMSKNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHPEKAIRI 135

Query: 255 HMP-GIIKALNVSNAAAVAL--YI--TQNHF 280
            M    +++LNVSN   V +  Y    Q  F
Sbjct: 136 PMNDEHVRSLNVSNT--VCMIVYEALRQQQF 164


>gi|312862562|ref|ZP_07722804.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           vestibularis F0396]
 gi|311101967|gb|EFQ60168.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           vestibularis F0396]
          Length = 169

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 8/151 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D + K H+     +   +D     E     +    + G E  GL     +E       +
Sbjct: 66  ADFMSKNHAGRLHLVTKFADKTYSEEAYADGEDHYFMFGREDTGLPEDFMREHPEKAIRI 125

Query: 255 HMP-GIIKALNVSNAAAVAL--YI--TQNHF 280
            M    +++LNVSN   V +  Y    Q  F
Sbjct: 126 PMNDEHVRSLNVSNT--VCMIVYEALRQQQF 154


>gi|166710194|ref|ZP_02241401.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 158

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +            L ++     E+ P     +L
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLKVHVDL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
             AL  +     +   LS+ S    +     D  A + G E +GL  +  E+        
Sbjct: 68  PSALAAIAPK--RVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPTEVLESIPPQHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 126 LPMRPGNRSLNLSNTVAVMVFEAWRQ 151


>gi|237739114|ref|ZP_04569595.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423714|gb|EEO38761.1| 23S rRNA methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 150

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +        +   + +S       +      + 
Sbjct: 3   IVLFQPEIPYNTGNIGRSCVLTNTTLHLIKPLGFSLDEKQVKRSGLDYWHLVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            D L+   +   +    ++ +K+        +   ++ G E +G+  +      E   ++
Sbjct: 63  EDFLEA--NRNIRLFYATTKTKQKYSDVKYEENDFIMFGPESRGIPEEILNKNPERCITI 120

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M G   +LN+SN+A V LY       
Sbjct: 121 PMIPM-GR--SLNLSNSAVVILYEAYRQLG 147


>gi|302833377|ref|XP_002948252.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
           nagariensis]
 gi|300266472|gb|EFJ50659.1| hypothetical protein VOLCADRAFT_45595 [Volvox carteri f.
           nagariensis]
          Length = 155

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 13/156 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G + R+  A +    +        +   L ++     + +     S+ 
Sbjct: 1   VVLVHPQIPQNTGNVARTCAATAAPLHLVGPLGFQLDDRKLKRAGLDYWDAVAVNTHSSW 60

Query: 196 TDALQKMHS--WGFQTIGLSSDSKKPLE--QEIKNDKIALILGAEGKGLRPKTQETATS- 250
                         + +  +    K     +        L+ GAE  GL P  +  +   
Sbjct: 61  DAFFAFFQQLPNPKRLVAFTVYGDKYYAGPEFSYQPGDWLVFGAETSGLPP--KAHSDVL 118

Query: 251 -----MAHLHMPGI-IKALNVSNAAAVALYITQNHF 280
                +  + +  + ++++N+S A  V L+      
Sbjct: 119 ASGGCLVKIPIRDMHVRSINLSVAVGVGLFEAIRQL 154


>gi|332968421|gb|EGK07488.1| TrmH family RNA methyltransferase [Kingella kingae ATCC 23330]
          Length = 154

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
             +VL     P N G I+R      CD  +      P +S+ + ++     E        
Sbjct: 2   FTVVLYQPEIPPNTGNIIRLCANTGCDLHLVKPLGFPLDSSKMKRAGLDYHEFSQLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSM 251
           +  D    +     +   L++      +Q         + G E +GL      +  +   
Sbjct: 62  SWQDCWAALQGK--RIFALTTKGSTRPDQVAFQAGDVFLFGPETRGLPTDILASLPSEQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
               M    +++N+SN  A+ ++     
Sbjct: 120 IRFPMMPDNRSMNLSNTVAITVFEAWRQ 147


>gi|332367413|gb|EGJ45146.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1059]
          Length = 184

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYESL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     +   +S  ++K   +E          + G E KGL  +  +       
Sbjct: 82  DDFMEQMDG---KLYLISKFAEKVYSEEYFAAEGSHYFMFGREDKGLPEEFMRRHPEKAL 138

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 139 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 170


>gi|332523185|ref|ZP_08399437.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314449|gb|EGJ27434.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 181

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     E +      NL
Sbjct: 19  IVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMRRAGLDYWEKLDVRFYDNL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D L K        I   +      E      +   + G E KGL     ++       +
Sbjct: 79  EDFLDKCDGQ-LHLISKFASKVYSDEHFDDGQRHYFLFGREDKGLPEAFMRKYPEKALRI 137

Query: 255 HMP-GIIKALNVSNAAAVAL--YITQNHFA 281
            M    +++LN+SN   V +  Y      A
Sbjct: 138 PMNDEHVRSLNLSNT--VCMIVYEALRQQA 165


>gi|91784181|ref|YP_559387.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
 gi|91688135|gb|ABE31335.1| RNA methyltransferase TrmH, group 1 [Burkholderia xenovorans LB400]
          Length = 278

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQTDPEAIAMASGADDVLACAHVVP 84

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L DAL           ++  +G       + +    +Q +  + IAL+ G E  GL  +
Sbjct: 85  TLADALSGVHWSIALTARLREYGPPQWTPRAAAGIARDQAVHGE-IALVFGNERTGLSNE 143

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             E  +++AH+       +LN++ A  V  Y  +
Sbjct: 144 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177


>gi|290967916|ref|ZP_06559466.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290782055|gb|EFD94633.1| putative RNA methyltransferase, TrmH family, group 2 [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 161

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+     P N G + R   A      +        E   L ++       +      N+
Sbjct: 3   IVMVEPEIPGNTGNVARLCAANHMTLHLVKPLGFSLEDKYLKRAGLDYWPLVDVQVHENV 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D +      G     L++ S++        +   L  G E KGL     +E       +
Sbjct: 63  ADVMA--KYAGHAMYYLTTKSRQCYADISFTEDDLLFFGKETKGLPESMLKEHPERCFRI 120

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
            M    ++LN+SN+ A+  Y      
Sbjct: 121 PMIEAARSLNLSNSVAIVAYEALRQL 146


>gi|237736752|ref|ZP_04567233.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420614|gb|EEO35661.1| 23S rRNA methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 152

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P+N G I R++V  +    +        +   L ++       +  +   + 
Sbjct: 3   IVLLNPEIPYNTGNIGRTSVLTNTKLHLIKPLGFSLDEKQLKRAGLDYWHLVDLVVWESY 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + ++   + G +    ++ +K+        +   ++ G E +G+  +      E     
Sbjct: 63  EEFVEA--NKGARIFYATTKTKQRYSDIEFKENDFVMFGPESRGIPEEILNAHKENC--- 117

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M  + ++LN+SN+AA+ LY     
Sbjct: 118 ITIPMIDMGRSLNLSNSAAIILYEALRQ 145


>gi|113866368|ref|YP_724857.1| rRNA methylase (SpoU class) [Ralstonia eutropha H16]
 gi|113525144|emb|CAJ91489.1| predicted rRNA methylase (SpoU class) [Ralstonia eutropha H16]
          Length = 156

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGAQLHLVKPLGFPLEDARMRRAGLDYHEYATMRVHESW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-----S 250
              +        +   L++    P  +         + G+E +GL P+ +          
Sbjct: 64  DALMASEQPDPARMFALTTRGSTPFGEVAFRPGDWFVFGSETRGLSPERR---DWFPPAQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SN  AV ++     
Sbjct: 121 RIRLPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|15811191|gb|AAL08856.1|AF308680_1 unknown [Ehrlichia ruminantium]
          Length = 99

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 17/107 (15%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATK------NALARLDWDANLPHPFPVKTVPPQTIDKI 104
           +YG H   AAL N +RK  +LL T+      N + ++   +   + +P K V   TI+ +
Sbjct: 1   IYGKHPCVAALQNINRKCHELLVTENFIKHNNGIQKIRELSKQKNIYP-KQVNINTINSV 59

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAIL 151
           +   + HQG+AL+ + + + +++         VL ++  P  I  I+
Sbjct: 60  LPPNSNHQGIALQVSIVDTVSIED--------VLSNI--PTEISTII 96


>gi|269114995|ref|YP_003302758.1| tRNA/rRNA methyltransferase [Mycoplasma hominis]
 gi|268322620|emb|CAX37355.1| tRNA/rRNA methyltransferase [Mycoplasma hominis ATCC 23114]
          Length = 176

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-LEHIPYIRISNLTDALQKMHS 204
           N   I+R+  A +    I            + + A+G  L  I +    N  +  +K   
Sbjct: 14  NTSNIIRTCFAGNAKLHIIKPIAFDLHPHWMKRKAAGHFLTEIQHEVHENYEEFFKKYGD 73

Query: 205 WGF---QTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQET----ATSMAHLHM 256
                    GL +      +QE+  N ++ ++ G E  G+  +  +T          + M
Sbjct: 74  KNIYYVTRYGLKNYVDVDYKQELQTNGELWIMFGTESTGIPKRIMQTNIPNC---LRIPM 130

Query: 257 PGIIKALNVSNAAAVALYI--TQNHFA 281
               ++LN++N+ A+ L+    QN FA
Sbjct: 131 FDECRSLNLANSVAIVLFEVLRQNDFA 157


>gi|302527165|ref|ZP_07279507.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
 gi|302436060|gb|EFL07876.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
          Length = 153

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A    C+  +        E   L ++     +       ++L  A Q + 
Sbjct: 12  PPNTGNAIRLAANTGCELHLVEPLGFTLEDKQLRRAGLDYHDLARVHVHADLAAAWQVL- 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
               +    S+ + +            L+ G E  GL  + Q  A  T    L M    +
Sbjct: 71  -LPAKVYAFSATATRLYTDVSYAPGDVLMFGPESAGLPDEVQRAAEVTDRLRLPMLPNNR 129

Query: 262 ALNVSNAAAVALY--ITQNHF 280
           +LN++N AA+A+Y    QN F
Sbjct: 130 SLNLANTAAIAVYEGWRQNGF 150


>gi|15805267|ref|NP_293955.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6457905|gb|AAF09819.1|AE001885_3 RNA methyltransferase, putative [Deinococcus radiodurans R1]
          Length = 158

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 3/157 (1%)

Query: 127 DAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           DA  +  LL +VL       N+G + R+      +  +              ++    L+
Sbjct: 3   DAEASGPLLHVVLFEPEKAGNVGNVARTCSVLGAELHLIRPFGFHLHDREFRRAVMDYLQ 62

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
            +     +  +D   ++     +    S+ + +   +        L+ G E +GL P   
Sbjct: 63  GVTLHEYAGWSDFQAQLPDAA-RVFAFSTHATEYHTRAGFKRGDYLLFGPESRGL-PVWL 120

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A     L  PG  ++LN+S A   A +       +
Sbjct: 121 RDALPKLKLPQPGRGRSLNLSVAVGAAAFEAGRQIER 157


>gi|319653676|ref|ZP_08007774.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317394649|gb|EFV75389.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 156

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P N G I  +  A      +       ++  ++ ++       +      ++
Sbjct: 5   VVLYQPDIPANTGNIALTCAATDTSLHLIRPLGFSTDEEMIKRAGFDFWNSVNITYYDSM 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
            D   K     +        +    +    + +   + G E  GL     +E       +
Sbjct: 65  DDFFSKNQGEFYYIETFGEQAHSSFDFSDASKEHYFMFGKETTGLPKDLLEENKDHFLRI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   +++LN+S+ AA+ +Y     
Sbjct: 125 PMNDNVRSLNLSSTAAILVYEALRQ 149


>gi|295101681|emb|CBK99226.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
           L2-6]
          Length = 168

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 6/152 (3%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L +VL     P N G + R+    +C   +        +   L  +      ++  
Sbjct: 3   EKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYLDI 62

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
               +L D               ++ + +        D   L+ G E  GL       A 
Sbjct: 63  SYYDSLDDF---FSKNDGPFYYFTTKAPRRYTDVAYPDGAYLVFGREDAGLPEALLA-AD 118

Query: 250 S--MAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M    ++LN+SN+ AV +Y     
Sbjct: 119 QEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150


>gi|94969144|ref|YP_591192.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551194|gb|ABF41118.1| RNA methyltransferase TrmH, group 1 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 239

 Score = 63.5 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 15/158 (9%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYI 190
           ++L +VL    +P NIGA  R+   F    +     + PS     A+SA GA E +    
Sbjct: 7   NRLYVVLVATRNPLNIGAAARAMSNFGVMHLRVVNPFDPSFRE--AQSAVGAEELLRNAE 64

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--------NDKIALILGAEGKGLRP 242
           +  ++ +A+         T     + + P+    +        + K+A++ G+E +GL  
Sbjct: 65  QFGSVAEAVADCSLVVGTTAARDRELQHPMHALTQAAPLIREHSGKVAVLFGSEKRGLSN 124

Query: 243 KTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQN 278
           +       + H+      +  ++N+  A AV +Y    
Sbjct: 125 EDLSHCHWLMHIPT--RTEHLSMNLGQAVAVCMYEIAR 160


>gi|317484738|ref|ZP_07943638.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
 gi|316923990|gb|EFV45176.1| RNA methyltransferase [Bilophila wadsworthia 3_1_6]
          Length = 257

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 21/177 (11%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKS 179
           L+  + DA+R+ +++MV      P NIG   R+     C  + + +  +   E A    +
Sbjct: 2   LVQASQDALRHLEIIMV--GTKFPENIGMAARACANTGCGRLTLVSPAWWDKEKARPLAT 59

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------ 227
           A G     P +    +   L    +    T G ++ +       +  +            
Sbjct: 60  AKGE----PLLDAIEVKPTLGDALAPNVLTFGTTARTGGWRRGLLTPEQAAGEIAPLLHE 115

Query: 228 --KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             ++A++ G E +GL     E    +  +   G   +LN++ A  +  Y      ++
Sbjct: 116 GSRVAIVFGCEDRGLSNADIEQCQRLVTIPTAGEASSLNLAQAILILTYECMKAVSR 172


>gi|295395745|ref|ZP_06805934.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971406|gb|EFG47292.1| TrmH family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 155

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A        +          A L ++     +         +    +++ 
Sbjct: 13  PGNTGNAIRLAAVTGAHLHLVEPLGFDLSDAKLRRAGLDYHDLAHVTVHPTIEHLWEELG 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIK 261
               + I  ++ +    +         L+ G E  GL  +  E         + M    +
Sbjct: 73  HK--RVIAFTTHTTHTFDTVEYTSDDVLLFGKESTGLPAEVAEDPHVDLAVRIPMLEGRR 130

Query: 262 ALNVSNAAAVALYITQNHFA 281
           +LN++N+A++A Y       
Sbjct: 131 SLNLANSASIATYEAWRQLG 150


>gi|85711495|ref|ZP_01042553.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
           baltica OS145]
 gi|85694647|gb|EAQ32587.1| Predicted rRNA/tRNA methylase, SpoU family protein [Idiomarina
           baltica OS145]
          Length = 154

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A        +        +   + ++              N 
Sbjct: 4   LVLFEPEIPPNTGNVIRLAANTGMQLHLIEPLGFDLDEKKVRRAGLDYHALTQVKIHKNW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS--MAH 253
           +D L+ +     +    ++       +    +   L+ G E +GL     +T        
Sbjct: 64  SDFLENVDYN--RIFACTTKGSTRYTEVAYEENDVLLFGPETRGLPMDVLQTFPQENWLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SN+ A+  Y       
Sbjct: 122 LPMVPDSRSLNLSNSVAIFTYEAWRQLG 149


>gi|118602767|ref|YP_903982.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567706|gb|ABL02511.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 153

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N GAI+R       +  +        E   L ++     E +      N 
Sbjct: 4   LVLFEPEIPNNTGAIIRLCANMGANLRLIKPYGFEMEDKKLRRAGLDYKELMCVSEYDNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            D L+K        +  SS  K            +L+LG E +GL              L
Sbjct: 64  DDYLEKEKPKNLFVV--SSKVKTIYTDVKYQAGDSLLLGPETRGLPQDILNQ--YKGITL 119

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFA 281
            M    ++LN+SN A++  Y       
Sbjct: 120 PMQDKSRSLNLSNCASIVAYEAWRQIG 146


>gi|257483750|ref|ZP_05637791.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331012099|gb|EGH92155.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 151

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+       +L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              ++K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ASCMEKIGNP--RLFAFTTKGSRPFHDASFEPGDAFLFGPESRGLPADILDSLSSEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|327474543|gb|EGF19948.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK408]
          Length = 184

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPVDDRKMKRAGLDYWDKLDITYYESL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     +   +S  ++K   +E          + G E KGL  +  +       
Sbjct: 82  EDFMEQMDG---RLYLISKFAEKVYSEENFAAEGSHYFMFGREDKGLPEEFMRRHPEKAL 138

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 139 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 170


>gi|312277678|gb|ADQ62335.1| RRNA methyltransferase, TrmH family [Streptococcus thermophilus
           ND03]
          Length = 169

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 12/153 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
            D + K H+     +  +  + K   +E+  D      + G E  GL     +E      
Sbjct: 66  ADFMSKNHAGRLHLV--TKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHPEKAI 123

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHF 280
            + M    +++LNVSN   V +  Y    Q  F
Sbjct: 124 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQQF 154


>gi|55820364|ref|YP_138806.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
 gi|55822253|ref|YP_140694.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066]
 gi|55736349|gb|AAV59991.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus LMG
           18311]
 gi|55738238|gb|AAV61879.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
           CNRZ1066]
          Length = 184

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 12/153 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 21  IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 80

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
            D + K H+     +  +  + K   +E+  D      + G E  GL     +E      
Sbjct: 81  ADFMSKNHAGRLHLV--TKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHPEKAI 138

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHF 280
            + M    +++LNVSN   V +  Y    Q  F
Sbjct: 139 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQQF 169


>gi|116627199|ref|YP_819818.1| rRNA methyltransferase, TrmH family [Streptococcus thermophilus
           LMD-9]
 gi|116100476|gb|ABJ65622.1| Predicted rRNA methylase (SpoU class) [Streptococcus thermophilus
           LMD-9]
          Length = 169

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 12/153 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 6   IVLFEPRIPQNTGNIARTCAATNSPLHIIRPMGFPIDDKKMKRAGLDYWDKLDITYYDNL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
            D + K H+     +  +  + K   +E+  D      + G E  GL     +E      
Sbjct: 66  ADFMSKNHAGRLHLV--TKFADKTYSEEVYADGEDHYFMFGREDTGLPEDFMREHPEKAI 123

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YI--TQNHF 280
            + M    +++LNVSN   V +  Y    Q  F
Sbjct: 124 RIPMNDEHVRSLNVSNT--VCMIVYEALRQQQF 154


>gi|91070320|gb|ABE11237.1| tRNA/rRNA methyltransferase [uncultured Prochlorococcus marinus
           clone HF10-88F10]
          Length = 90

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                  + M G++++LNVS AA++ L+      
Sbjct: 1   MVDQSIFIPMRGMVQSLNVSVAASILLFEAVRQR 34


>gi|124028494|ref|YP_001013814.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
 gi|123979188|gb|ABM81469.1| rRNA methylase [Hyperthermus butylicus DSM 5456]
          Length = 239

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 21/169 (12%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           + ++   ++ +V+  V    N+G I R A  F+ D        +  ES+   + A+  + 
Sbjct: 1   MQSLGPPRVRLVVVGVEGEINLGFIARLAANFAIDEFYLVSPVASPESSEARRFAANGVY 60

Query: 186 HIP-YIRISNLTDALQKMHSWGFQTIGLSS----DSKKPLEQEIKN-----------DKI 229
            +   I + +L +AL+     G      +S     +   L   +             + +
Sbjct: 61  MLDRVIVVDSLEEALK-----GVDLAVCTSAKIGQASDVLRHAVTPREFAEEIAPRYESV 115

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           A++ G E  GL          + H+        LN+S+A A+ LY   N
Sbjct: 116 AVVFGRESVGLTRDELAKCHLLVHIPANPNYPVLNLSHAVAILLYELYN 164


>gi|116749122|ref|YP_845809.1| tRNA/rRNA methyltransferase SpoU [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698186|gb|ABK17374.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobacter fumaroxidans
           MPOB]
          Length = 164

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +            L ++      H+      +L
Sbjct: 12  VVLYQPEIPQNTGNIARTCAATHTPLHLVEPLGFRITDRGLKRAGLDYWPHVRLKVHPDL 71

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
               +++    +      +D +    +    D   L  G+E  GL           + ++
Sbjct: 72  ESLCREIGDRRWVYFSAHADRRYCDFRFQPGD--CLFFGSESFGLPNDLLVSRPGFVINI 129

Query: 255 HM-PGIIKALNVSNAAAVALYITQNHF 280
            +    +++LN++ +  +AL+      
Sbjct: 130 PINRARVRSLNLATSVGIALFEALRQL 156


>gi|326796538|ref|YP_004314358.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
 gi|326547302|gb|ADZ92522.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
          Length = 239

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 15/153 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIG   R+        ++            +++++  +      + +  L
Sbjct: 7   IVLVNTSHPGNIGGAARAMKNMGLSKLVLVSPKVFPSEEAVSRASGASDLLDSAVVVDTL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSK-------KPLEQEIKNDK----IALILGAEGKGLRPKT 244
            +A+          IG S+  +        P E      K     A + G E +GL  + 
Sbjct: 67  EEAISDCQ----LVIGTSARERHIPWPLLDPRESAELTYKEGLETAFVFGREDRGLTNEE 122

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +      H+       +LN++ A  V  Y  +
Sbjct: 123 LQRCHYHVHIPSVEAFSSLNLATAVQVIAYELR 155


>gi|325695061|gb|EGD36964.1| SpoU family RNA methyltransferase [Streptococcus sanguinis SK150]
          Length = 167

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 15/155 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 5   IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETAT--SM 251
            D +++M     +   +S  ++K   +E          + G E KGL  +          
Sbjct: 65  EDFMEQMDG---RLYLISKFAEKVYSEEYFAAEGSHYFMFGREDKGLPEEFMR-CHPEKA 120

Query: 252 AHLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
             + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 121 LRIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 153


>gi|163761614|ref|ZP_02168685.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43]
 gi|162281210|gb|EDQ31510.1| tRNA/rRNA methyltransferase [Hoeflea phototrophica DFL-43]
          Length = 155

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 9/144 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GAI+R          I            L ++    +E     R     +      
Sbjct: 14  PGNTGAIMRLGACMGIGIHIIGPAGFDLSDRALKRAGMDYIEMATLTRHDGWEEFEAWRK 73

Query: 204 SWGFQTIGLSSDSKKPLEQE---IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           + G + + +++ S      +     + +  ++ G E  G   +  + A     + M   I
Sbjct: 74  AEGRRLVLMTTKSAVSYMDDTVQTLSAQDVVLFGRESVGAPERVHDAADLRLTIPM---I 130

Query: 261 K---ALNVSNAAAVALYITQNHFA 281
           +   +LN++ + A+        F 
Sbjct: 131 EGRRSLNLAMSVAMVAGEINRRFG 154


>gi|89076382|ref|ZP_01162715.1| putative rRNA methylase, SpoU family protein [Photobacterium sp.
           SKA34]
 gi|89047953|gb|EAR53544.1| putative rRNA methylase, SpoU family protein [Photobacterium sp.
           SKA34]
          Length = 154

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R +     +  +        +   + ++     +     R  + T  +Q M   
Sbjct: 14  NTGNIIRLSANCGANLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKDFTAFMQAM--E 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKAL 263
           G +    ++ +              L+ G E +GL  +   +        + M    ++L
Sbjct: 72  GRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEFIASQPLEQRLRIPMQPDSRSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  +      
Sbjct: 132 NLSNAVAIIAFEAWRQM 148


>gi|296158968|ref|ZP_06841796.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           Ch1-1]
 gi|295890843|gb|EFG70633.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           Ch1-1]
          Length = 278

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPQVQADPEAIAMASGADDVLASAHVVP 84

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L DAL           ++  +G       + +    EQ +  + IAL+ G E  GL  +
Sbjct: 85  TLADALSGVHWSIALTARLREYGPPQWAPRAAAGVAREQAMHGE-IALVFGNERTGLSNE 143

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             E  +++AH+       +LN++ A  V  Y  +
Sbjct: 144 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177


>gi|257783855|ref|YP_003179072.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
 gi|257472362|gb|ACV50481.1| tRNA/rRNA methyltransferase (SpoU) [Atopobium parvulum DSM 20469]
          Length = 220

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 56/211 (26%), Gaps = 65/211 (30%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +        +   L ++     + +      N 
Sbjct: 4   LVLVEPEIPANTGNIGRTCVVSGTHLHLVGPLGFSLDDKSLKRAGMAYWKSLNVSVYDNW 63

Query: 196 TDALQK--------------MHSWGFQTI------GLSSDSKKPLEQEIKNDKIALILGA 235
              ++K               H  G   +       L+  +KK   Q    D   LI G 
Sbjct: 64  NQFIEKNGLADTSTTPEGVFAHDVGIDAVDKPHLHFLTKKAKKTYTQATYRDGDYLIFGK 123

Query: 236 EGKGLRPKTQ-ETATSMAHLHM--------------------PGI--------------- 259
           E  GL  +   + A     + M                     G                
Sbjct: 124 ESLGLSEELLAKHADECERIPMLQDSVSLVNREDWSQKHDALDGGGQYSHPVLLQQDICG 183

Query: 260 ---------IKALNVSNAAAVALYITQNHFA 281
                    + ALNVSNAAA+ LY       
Sbjct: 184 NFIDPNEFSVSALNVSNAAAIVLYEALRQIG 214


>gi|295688613|ref|YP_003592306.1| tRNA/rRNA methyltransferase SpoU [Caulobacter segnis ATCC 21756]
 gi|295430516|gb|ADG09688.1| tRNA/rRNA methyltransferase (SpoU) [Caulobacter segnis ATCC 21756]
          Length = 268

 Score = 63.1 bits (153), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +   ++L+      NIG++ R    F    +   +            SASGA   +   +
Sbjct: 13  APPCVILNEPQLAENIGSVARVMANFGLYDLRLVRPRDGWPQERAWASASGANWPLDDAK 72

Query: 192 I-SNLTDALQKMHSWGFQTIGLSSDSKKPL--------------EQEIKNDKIALILGAE 236
           +  +L  A+  +          ++  ++                E+  +  K+ L+ G E
Sbjct: 73  VFDSLEAAIADLK----LVYATTARPRETRLPVYTPRESAGHLAEEVAQGRKVGLLFGGE 128

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             GL         ++  + +    ++LN++ A ++  Y 
Sbjct: 129 RAGLETHDIALCQAIVSIPIDERFRSLNLAQAVSINAYE 167


>gi|254491749|ref|ZP_05104928.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
           thiooxidans DMS010]
 gi|224463227|gb|EEF79497.1| RNA methyltransferase, TrmH family, group 1 [Methylophaga
           thiooxydans DMS010]
          Length = 253

 Score = 63.1 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 17/157 (10%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA--SGALEHIPYIRISN 194
           VL     P NIGA  R   A    G+      SP        +A  SGA + +   ++ +
Sbjct: 21  VLVGTTHPGNIGAAAR---AMKTMGLSNLHLVSPKLYPSAEATARASGADDILHTAQVHD 77

Query: 195 -LTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L +AL           ++       +     + + LE+   N  IA++ G E  GL  +
Sbjct: 78  SLDEALVGCHHAFAMSARLRHLPVPVVN-PRQAVEQLEKFDDNTHIAIVFGREHSGLSNE 136

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +    + ++       +LN++ A  V  Y  +  F
Sbjct: 137 ELDRCQYLINIPANPDYSSLNLAAAVQVLAYELKMSF 173


>gi|172056702|ref|YP_001813162.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171989223|gb|ACB60145.1| RNA methyltransferase, TrmH family, group 2 [Exiguobacterium
           sibiricum 255-15]
          Length = 157

 Score = 63.1 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 12/151 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+     P N G I R+  A      +       ++   L ++     E +      +L
Sbjct: 5   VVMYQPEIPQNTGNISRTCAATHSVLHLIRPLGFSTDDKQLKRAGLDYWEFVDVRYHDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLR----PKTQETA 248
            +   K     F    ++   +K   Q   +   +    + G E KGL      +  E  
Sbjct: 65  EELWDKHPDGTF--YYITKYGEKYPSQVDLSNVEEDYFFVFGRETKGLPLNVIDENLERC 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                L    ++++LNVSN AA+ +Y     
Sbjct: 123 ---IRLPQSNLVRSLNVSNTAAIIVYEALRQ 150


>gi|292491983|ref|YP_003527422.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
           halophilus Nc4]
 gi|291580578|gb|ADE15035.1| RNA methyltransferase, TrmH family, group 1 [Nitrosococcus
           halophilus Nc4]
          Length = 242

 Score = 63.1 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL     P NIGA  R+        +          +   A+++ GA E +      ++
Sbjct: 8   IVLVGTTHPGNIGAAARAMHTMGLSRLYLVNPARFPCAEATARAS-GADELLAQAEICTS 66

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           L  A+           GLS+ S+                 QE    ++A++ G E  GL 
Sbjct: 67  LPQAIAGCR----MVFGLSARSRNISWPALDARACGALTVQEALEGEVAIVFGREHSGLS 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +      H+       +LN++ A  V  Y  +
Sbjct: 123 NIELDHCHYWVHIPSNPAYSSLNLAAAVQVMAYEVR 158


>gi|114321720|ref|YP_743403.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228114|gb|ABI57913.1| tRNA/rRNA methyltransferase (SpoU) [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 153

 Score = 63.1 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A        +        +   L ++     E        +L
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGAHLHLVHPLGFRLDDTRLRRAGLDYHEWARVAEHPSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
            D L+++         LS+       Q       AL+ G E  GLR +    +      L
Sbjct: 64  VDCLRQVRPRRAW--ALSTHGSVGYHQVRYAPGDALVFGCETGGLRRELTRFSPGRRLRL 121

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    +++N+ N+ +V LY     
Sbjct: 122 PMRPESRSMNLGNSVSVVLYEALRQ 146


>gi|260188421|ref|ZP_05765895.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
 gi|289449064|ref|ZP_06438808.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
 gi|289422022|gb|EFD19223.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis CPHL_A]
          Length = 154

 Score = 62.7 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+  A  C+  +            L ++     +       ++L  A + +   
Sbjct: 14  NTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAHAWEALSPA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +              L+ G E  GL   T      T    + M    ++L
Sbjct: 74  --RVFAFTAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAA VA+Y     
Sbjct: 132 NLSNAATVAVYEAWRQ 147


>gi|282900733|ref|ZP_06308675.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194533|gb|EFA69488.1| RNA methyltransferase TrmH, group 1 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 245

 Score = 62.7 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           N+G+I R    F    +I         S    + A  A E +   R + NLT AL     
Sbjct: 23  NLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEILENARIVDNLTTALAGC-D 81

Query: 205 WGFQTIGLSSDSKKPLEQ---------EIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               TIG   + + P+E                  LI G E +GL  +    A  +  + 
Sbjct: 82  RAIATIGRDYNGELPIESPRHALPWLLAESEKPAGLIFGREDRGLTNQEINYAQKLVSIP 141

Query: 256 MPGIIKALNVSNAAAVALYIT 276
                 +LN++ A ++  Y  
Sbjct: 142 TSPEYTSLNLATAVSICCYEL 162


>gi|319938705|ref|ZP_08013069.1| TrmH family RNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319811755|gb|EFW08021.1| TrmH family RNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 170

 Score = 62.7 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 17/156 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      NL
Sbjct: 8   IVLFEPQIPQNTGNIARTCAATNSPLHIILPMGFPIDDRKMKRAGLDYWDKLDITYYDNL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPK-TQETATS 250
            + + KM     Q   +S  ++K   +E      A     + G E KGL     +  +  
Sbjct: 68  EEFMSKMDG---QLYLISKFAEKVYVEENFA--TAGNHYFMFGREDKGLPEDFMRAHSEK 122

Query: 251 MAHLHMP-GIIKALNVSNAAAVAL--YI--TQNHFA 281
              + M    +++LN+SN   V +  Y    Q +FA
Sbjct: 123 ALRIPMNDEHVRSLNLSNT--VCMLVYEALRQQNFA 156


>gi|57242225|ref|ZP_00370164.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter
           upsaliensis RM3195]
 gi|57016905|gb|EAL53687.1| RNA methyltransferase, TrmH family, group 2 [Campylobacter
           upsaliensis RM3195]
          Length = 154

 Score = 62.7 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 13/151 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   +L
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNVGFKLHIIKPCVFDLSEKAVKRAGLDYWDKLEPIIWESL 63

Query: 196 TDALQ---KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + L+   +     F     ++ SKKP           L  G+E  GL  +      A  
Sbjct: 64  EEFLRSNLQCKERFFF---ATTKSKKPYFSVKFRAGDFLFFGSESFGLPNELMNLNEAHQ 120

Query: 251 MAHLHM--PGIIKALNVSNAAAVALYITQNH 279
              + M   G   +LN++ +  +  Y     
Sbjct: 121 -ITIPMKPYGR--SLNLATSVGIVSYEALRQ 148


>gi|332362259|gb|EGJ40059.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1056]
          Length = 184

 Score = 62.7 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +       L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLNITYYERL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            D +++M     +   +S  ++K   +E          + G E KGL  +  +       
Sbjct: 82  DDFMEQMDG---RLYLISKFAEKVYSEENFEAEGSHYFMFGREDKGLPEEFMRRHPEKAL 138

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 139 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 170


>gi|330447116|ref|ZP_08310766.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491307|dbj|GAA05263.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 154

 Score = 62.7 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 4/138 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R +     +  +        +   + ++     +     R  +    ++ M   
Sbjct: 14  NTGNIIRLSANCGANLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKDFAAFMEAMQGR 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKAL 263
             +    ++ +              L+ G E +GL  +   +        + M    ++L
Sbjct: 74  --RIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEFIASLPLEQRLRIPMQPDSRSL 131

Query: 264 NVSNAAAVALYITQNHFA 281
           N+SNA A+  +       
Sbjct: 132 NLSNAVAIISFEAWRQMG 149


>gi|237752582|ref|ZP_04583062.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376071|gb|EEO26162.1| rRNA methylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 153

 Score = 62.7 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R   A +    +            L ++     EH+     ++ 
Sbjct: 5   IVLHQPRIPQNTGNIGRLCFASNTILHLIYPLGFSLTQKELKRAGMDYWEHLEVYEYADT 64

Query: 196 TDALQ-KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAH 253
               +            L++ +K P  +        L  G E  GL  +           
Sbjct: 65  ESFFKSYFIDSNLPHFFLTTKTKIPYYKAPMQAGAYLHFGREDAGLSQEILSANQEYCYT 124

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN++ +  + LY     
Sbjct: 125 IPMQNNARSLNLATSVGIVLYEGIRQ 150


>gi|126665731|ref|ZP_01736712.1| predicted rRNA methylase [Marinobacter sp. ELB17]
 gi|126629665|gb|EBA00282.1| predicted rRNA methylase [Marinobacter sp. ELB17]
          Length = 154

 Score = 62.7 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        E   + ++     E+       + 
Sbjct: 4   VVLYEPEIPPNTGNIIRLCANTGCKLHLIEPLGFTLEDKRMRRAGLDYSEYASVKVHKSY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-SMAH 253
              L        +  GL++       +    +   L+ G E +GL    ++         
Sbjct: 64  PAFLHSEQPQ--RLFGLTTKGSHYYHEVSYQEGDYLMFGPETRGLPAPVRDALPDGHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    ++LN+SN AA+ +Y      A
Sbjct: 122 VPMCAHSRSLNLSNTAALVVYEAWRQLA 149


>gi|323526554|ref|YP_004228707.1| TrmH family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383556|gb|ADX55647.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp.
           CCGE1001]
          Length = 277

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIR-IS 193
           VL   + P N+GA  R+        ++      P           ASGA + +     + 
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAMASGADDVLASAHIVP 84

Query: 194 NLTDALQKMHSWGFQTIGLSSD-------------SKKPLEQEIKNDKIALILGAEGKGL 240
            L DAL  +H     +I L++              +      E  + +IAL+ G E  GL
Sbjct: 85  TLADALSGVH----WSIALTARQREYGPPQWTPRAAASLARDEALHGEIALVFGNERTGL 140

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 141 SNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 177


>gi|167837119|ref|ZP_02464002.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis MSMB43]
          Length = 299

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLIEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++GL++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLGLTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|22123992|ref|NP_667415.1| hypothetical protein y0071 [Yersinia pestis KIM 10]
 gi|21956733|gb|AAM83666.1|AE013608_1 hypothetical protein y0071 [Yersinia pestis KIM 10]
          Length = 194

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 15/177 (8%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A        P    +    L +VL     P N G I+R      C   +        +  
Sbjct: 15  AALNKGFWYPAPLIIGGHMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDK 74

Query: 175 VLAKSASGALEHIPYIRISNLTDAL--QKM------HSWGFQTIGLSSDSKKPLEQEIKN 226
            L ++     E        +    L  +K+        +   T G  + S    +     
Sbjct: 75  RLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDY- 133

Query: 227 DKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               L+ G E +GL     +   A     + M    +++N+SNA +V +Y       
Sbjct: 134 ----LLFGPETRGLPAYILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 186


>gi|238898810|ref|YP_002924492.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466570|gb|ACQ68344.1| rRNA methylase, SpoU family [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 246

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG++ R+        +      S    A     A+GA      I  S L
Sbjct: 10  IVLVETSHPGNIGSVARAMKTMGLSDLYLVNP-SKKPDAKTISLAAGAA---DLIERSTL 65

Query: 196 TDALQ-KMHSWGFQTIGLSSDSKKPLEQEIK-------------NDKIALILGAEGKGLR 241
            D L   +       IG S+ S+     EI              +  +AL+ G E  GL 
Sbjct: 66  VDTLDTALAECNL-VIGASARSRTLSWPEIDPKQCALYSLHQAESGPVALVFGCERTGLS 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +       +       +LN++ A  +  Y  +
Sbjct: 125 NLELQKCHYHVVIPTNPEYSSLNLAMAVQILSYEIR 160


>gi|330987193|gb|EGH85296.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 151

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R      C   +        +   L ++     E+       +L
Sbjct: 4   VILFQPEIPPNTGNVIRLCANSGCTLHLIEPLGFELDDKRLRRAGLDYHEYATLQTHPDL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              ++K+ +   +    ++   +P          A + G E +GL     ++  +     
Sbjct: 64  ASCMEKIGNP--RLFAFTTKGSRPFHDASFEPDDAFLFGPESRGLPADILDSLSSEHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AVA+Y     
Sbjct: 122 LPMREGCRSLNLSNTVAVAVYEAWRQ 147


>gi|283956249|ref|ZP_06373729.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791969|gb|EFC30758.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 155

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 11/150 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   NL
Sbjct: 4   IVLIHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWENL 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            + L +     +  F     +   K   + E + +   L  G+E  GL  +  +      
Sbjct: 64  EEFLNENIIYKNRFF--FATTKSQKAYFDAEFQKNDF-LFFGSESYGLPMELMQLNWENA 120

Query: 252 AHLHM--PGIIKALNVSNAAAVALYITQNH 279
             + M   G   +LN++ +  +  Y     
Sbjct: 121 ITIPMKSYGR--SLNLATSVGIISYEALRQ 148


>gi|257092700|ref|YP_003166341.1| tRNA/rRNA methyltransferase SpoU [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045224|gb|ACV34412.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 154

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +            L ++     E+       + 
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCRLHLVKPLGFDLADRNLRRAGLDYHEYAEVRVHDDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
                 +   G +    ++ + + +           + G+E +GL               
Sbjct: 64  PALRVAL--VGRRLFACTTRAARTIADRRFAAGDVFVFGSETRGLPAAVLAEFADDWRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M    ++LN+SNA AV ++      A
Sbjct: 122 LPMLPGQRSLNLSNAVAVTVFEAWRQQA 149


>gi|332184301|gb|AEE26555.1| tRNA (cytosine34-2'-O-)-methyltransferase [Francisella cf. novicida
           3523]
          Length = 155

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   L ++     E        N  +  QK  
Sbjct: 12  PPNTGNIIRLCANVGAKLHLIEPLGFELEDKQLRRAGLDYHEFADLKIYKNFAEFYQKNE 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
                    ++ +K+   Q   +    L+ G E +GL     E        + M    ++
Sbjct: 72  DKKIW--ACTTKAKQYYHQVDFSCDDILLFGPETRGLPVDVLELLKQTQLKIPMYKNSRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 130 LNLSNSVAVILYGALNNIG 148


>gi|294945306|ref|XP_002784614.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239897799|gb|EER16410.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 288

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 10/112 (8%)

Query: 98  PQTIDKIVGKEAV-----HQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILR 152
            + ++++  K A      H    L T  +  P       ++LL++LD V D   +G ILR
Sbjct: 39  KKLLNELAEKVANMRSYQHN--MLGTIRMPQPLEKPPDTTKLLLILDGVIDAGQLGTILR 96

Query: 153 SAVAFSCDGIITTKRY-SPSESAVLAKSASGALEHIPYIR--ISNLTDALQK 201
           SA A     I    R  +        +S+ GAL H+P+    +  L   +++
Sbjct: 97  SAFALKWHSIWFLPRTNADPFDHKAIRSSQGALWHMPFSYGKLDRLERFIEE 148


>gi|28198735|ref|NP_779049.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1]
 gi|28056826|gb|AAO28698.1| tRNA/rRNA methylase [Xylella fastidiosa Temecula1]
 gi|307579878|gb|ADN63847.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 153

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +        +   L ++     E+       NL
Sbjct: 6   VLLYQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLDDRQLKRAGLDYHEYARMQVHPNL 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           + AL  +     +   LS+  +   +        A I G E +GL      T   +   +
Sbjct: 66  SSALAAIAPR--RLFALSTRGQVRYDTPTFRTGDAFIFGPETRGLPDTVLHTIPESQRLY 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 124 LPMQPQSRSLNLSNAVAVMVFEAWRQ 149


>gi|71275853|ref|ZP_00652137.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon]
 gi|71897938|ref|ZP_00680143.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|71899349|ref|ZP_00681509.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|170730164|ref|YP_001775597.1| tRNA/rRNA methylase [Xylella fastidiosa M12]
 gi|182681428|ref|YP_001829588.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23]
 gi|71163431|gb|EAO13149.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Dixon]
 gi|71730863|gb|EAO32934.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|71732182|gb|EAO34237.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa Ann-1]
 gi|167964957|gb|ACA11967.1| tRNA/rRNA methylase [Xylella fastidiosa M12]
 gi|182631538|gb|ACB92314.1| tRNA/rRNA methyltransferase (SpoU) [Xylella fastidiosa M23]
          Length = 155

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +        +   L ++     E+       NL
Sbjct: 8   VLLYQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLDDRQLKRAGLDYHEYARMQVHPNL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           + AL  +     +   LS+  +   +        A I G E +GL      T   +   +
Sbjct: 68  SSALAAIAPR--RLFALSTRGQVRYDTPTFRTGDAFIFGPETRGLPDTVLHTIPESQRLY 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SNA AV ++     
Sbjct: 126 LPMQPQSRSLNLSNAVAVMVFEAWRQ 151


>gi|158319987|ref|YP_001512494.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158140186|gb|ABW18498.1| RNA methyltransferase, TrmH family, group 2 [Alkaliphilus
           oremlandii OhILAs]
          Length = 156

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 10/152 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +        +   + ++     E +      + 
Sbjct: 4   VVLLEPEIPQNTGNIARTCAATGSVLHLIGPMGFSIDEKHVKRAGLDYWELLDLRYYDSY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
            + L K           +   K   E     +   ++ G E  G+         ET    
Sbjct: 64  EEFLSKNPEATIY-YATTKAEKAHSEMVYPEENCYIMFGKETAGIPKNILNENKETC--- 119

Query: 252 AHLHMP--GIIKALNVSNAAAVALYITQNHFA 281
             + M      ++LN+SN+ A+ +Y     + 
Sbjct: 120 IRIPMVDLEKARSLNLSNSVAIVVYEVLRQYN 151


>gi|304385180|ref|ZP_07367526.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
 gi|304329374|gb|EFL96594.1| RNA methyltransferase [Pediococcus acidilactici DSM 20284]
          Length = 172

 Score = 62.7 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 12/145 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    +    +            L ++     + +  +   NL D L  + 
Sbjct: 13  PANTGNIARTCAGTNAVLHLIKPLGFEISDKTLKRAGLDYWDSVKVVYHDNLPDFLATVK 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA-------LILGAEGKGLRPK-TQETATSMAHLH 255
               +   +S  + K   Q       A        + G E  GL     ++ A     + 
Sbjct: 73  DRK-RLFVVSKFASKAYTQADYTG--AEDDVDNYFLFGKETTGLPEAFMRQYADCAIRIP 129

Query: 256 MPG-IIKALNVSNAAAVALYITQNH 279
                I+ALN+SN+ A+ +Y     
Sbjct: 130 QNDQHIRALNLSNSVAIVIYEVLRQ 154


>gi|240963045|ref|XP_002400660.1| rRNA methylase, putative [Ixodes scapularis]
 gi|215490727|gb|EEC00370.1| rRNA methylase, putative [Ixodes scapularis]
          Length = 113

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 14/85 (16%)

Query: 200 QKMHSWGFQTIGLSS---------DSKKPLEQEIK--NDKIALILGAEGKGLRPKTQETA 248
           Q + + G+  +G +            +  L   +   +    LI+G E +G+  +     
Sbjct: 4   QVLKAKGWWVVGTAGVKQDGPFEGGPRSDLPWVLPPPDKPAILIVGNENQGMHRELGAVC 63

Query: 249 TSMAHL-HMPGI--IKALNVSNAAA 270
            S+  +        I +LNVS A  
Sbjct: 64  DSVLSISPAASSDLIGSLNVSVATG 88


>gi|58583829|ref|YP_202845.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84625632|ref|YP_453004.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574839|ref|YP_001911768.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae
           pv. oryzae PXO99A]
 gi|58428423|gb|AAW77460.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84369572|dbj|BAE70730.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519291|gb|ACD57236.1| hypothetical tRNA/rRNA methyltransferase YibK [Xanthomonas oryzae
           pv. oryzae PXO99A]
          Length = 158

 Score = 62.4 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +            L ++     E+ P     +L
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYAPLKVHVDL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
             AL  +     +   LS+ S    +     D  A + G E +GL  +  E+        
Sbjct: 68  PSALAAIAPK--RVFALSTRSTVRYDTPQFADGDAFLFGPETRGLPTEVLESIPPQHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 126 LPMRPDNRSLNLSNTVAVMVFEAWRQ 151


>gi|255089483|ref|XP_002506663.1| predicted protein [Micromonas sp. RCC299]
 gi|226521936|gb|ACO67921.1| predicted protein [Micromonas sp. RCC299]
          Length = 247

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 8/165 (4%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
            T    + S L +VL     P N G I R+  A      +          A L ++    
Sbjct: 61  ETASDGQRSDLAVVLVTPQIPGNTGTIARTCAAARVPLHLVGPLGFDLTDAQLKRAGLDY 120

Query: 184 LEHIPYIRISNLTDALQKMHS---WGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKG 239
              +      +                + +  S    +P  +E        L+ GAE  G
Sbjct: 121 WNSVCVRVHDDWDAFHAYWRDALGAPGRLVAFSKFGARPHAEEGAYRSGDWLLFGAETTG 180

Query: 240 LRPKTQETA-TS--MAHLHMPG-IIKALNVSNAAAVALYITQNHF 280
           L     +    S  +  + +    +++LN++ +A V +Y      
Sbjct: 181 LPGAAHDACADSGGIRRIPIDETHVRSLNLAVSAGVGVYEALRQI 225


>gi|159903675|ref|YP_001551019.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9211]
 gi|159888851|gb|ABX09065.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 246

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           N+G++ R    F  + +               K A    + +   +  SNL +A+     
Sbjct: 20  NLGSVARLCKNFGINQLRLVSPRCDPLDITTKKMALKGSDLLENAQIHSNLLEAIDDC-- 77

Query: 205 WGFQTIGLSS---DSKKPLE----------QEIKNDKIALILGAEGKGLRPKTQETATSM 251
              + +         + PL           Q    D IA+I G E +GL  +  + A  +
Sbjct: 78  --VRVVATCGRIDHGEIPLHSSETALNWLLQGSSKDPIAIIFGREDRGLSNQELQLAQKV 135

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L       +LN+S+A A+ L+    +
Sbjct: 136 ITLPSSLTYPSLNLSHAVAIILHDLIRY 163


>gi|238798831|ref|ZP_04642300.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
 gi|238717339|gb|EEQ09186.1| Methyltransferase [Yersinia mollaretii ATCC 43969]
          Length = 167

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 48/161 (29%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHHDY 63

Query: 196 TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L      G Q+ G +               S    +         L+ G E +GL  
Sbjct: 64  QAFLDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDY-----LLFGPETRGLPA 118

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +   A     + M    +++N+SNA +V +Y       
Sbjct: 119 TVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 159


>gi|300779738|ref|ZP_07089594.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300533848|gb|EFK54907.1| TrmH family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 153

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D+   P N G  +R          +        +   L +S     +        ++
Sbjct: 3   VIFDNPVIPGNTGNTIRLCAGTGFTLHLVKPLGFLLDDKHLKRSGLDYHDLADVQIHEDI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
                 +     +    ++ + +        D  AL+ G E  GL  +       T    
Sbjct: 63  ESCFASLIDA--RIFAFTTHTTRHYTDVEYRDTDALLFGTEPTGLPEEHSHHPRVTDQLR 120

Query: 254 LHM-PGIIKALNVSNAAAVALYITQNHFA 281
           + M PG  +++N++N+AAVA Y       
Sbjct: 121 IPMLPGR-RSMNLANSAAVASYEAWRQLG 148


>gi|164687676|ref|ZP_02211704.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM
           16795]
 gi|164603450|gb|EDQ96915.1| hypothetical protein CLOBAR_01318 [Clostridium bartlettii DSM
           16795]
          Length = 156

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R+         +        E   L +      +        + 
Sbjct: 5   VVLVEPEIPQNTGNIIRTCANTGAILHLIRPLGFSLEDKYLKRCGLDYWDISEIRYYDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHL 254
            +  +K     +     +  +K   + E ++    L+ G E KGL  P  +    +   +
Sbjct: 65  EELQEKYPDAKYF-YSTTKANKAHSDMEFEDGCF-LVFGKETKGLPKPLIEANMETCMRI 122

Query: 255 HM--PGIIKALNVSNAAAVALYITQNHFA 281
            M      ++LN+SN+ A+ +Y       
Sbjct: 123 PMLKLEKARSLNLSNSVAIVVYEAMRQIG 151


>gi|317050583|ref|YP_004111699.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316945667|gb|ADU65143.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 267

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 18/176 (10%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P  +        + + ++L+++  P N+G I R+        +      S  +  VL  +
Sbjct: 4   PAPAAEESTGWKNGVWVLLNNIEGPVNLGFISRAMANTGFAQLRFCGPVSADDPDVLRYA 63

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-----SDS-KKPLEQ--------EIK 225
                    + R+ ++    + M       IG+S     SD     L+Q           
Sbjct: 64  VHSGHLRENFTRVEDIGGLCRAMD----VVIGMSPRQPWSDGCDITLDQLPALVGQHTAA 119

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           + ++ L+ G E  GL             L       ++N++ A  + L+    H A
Sbjct: 120 HKRVGLLFGNEAHGLDNAALSHCRYRLALPTDSGYTSMNLAQAVLIVLWELHRHGA 175


>gi|327462030|gb|EGF08359.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1057]
          Length = 184

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 21/158 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLDITYYDSL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-----LILGAEGKGLRPKTQETAT- 249
            D +++M     +   +S  ++K   +E      A      + G E KGL  +       
Sbjct: 82  EDFMEQMDG---RLYLISKFAEKVYSEENFA---AESSHYFMFGREDKGLPEEFMR-CHP 134

Query: 250 -SMAHLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
                + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 135 EKALRIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 170


>gi|83720786|ref|YP_442465.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83654611|gb|ABC38674.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis E264]
          Length = 338

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 68  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVVP 127

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IA + G E  GL
Sbjct: 128 TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIAFVFGNERTGL 183

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 184 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 220


>gi|257138672|ref|ZP_05586934.1| RNA methyltransferase [Burkholderia thailandensis E264]
          Length = 306

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 36  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPCVQSDPEALAMASGADDVLASAHVVP 95

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IA + G E  GL
Sbjct: 96  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIAFVFGNERTGL 151

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 152 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188


>gi|297616863|ref|YP_003702022.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144700|gb|ADI01457.1| RNA methyltransferase, TrmH family, group 2 [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 152

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 9/148 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G + R+         +        E   L ++     + +      + 
Sbjct: 3   VVLVEPEIPQNTGNVARTCALTQTTLHLVKPLGFSLEDRYLKRAGLDYWDKVEVKVWDSF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            + L       +     ++ SK+            ++ G E +GL  +  E  + S+  +
Sbjct: 63  DNLLAVYPGRSYFL--ATTKSKQRYTDVRYKKGDFIVFGKETQGLPGELLERFSQSLIRI 120

Query: 255 HMPGIIK---ALNVSNAAAVALYITQNH 279
            M   +    +LN+SNA AV L+     
Sbjct: 121 PM---VDIGRSLNLSNAVAVVLFEALRQ 145


>gi|149370475|ref|ZP_01890164.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium
           SCB49]
 gi|149356026|gb|EDM44583.1| predicted rRNA methylase (SpoU class) [unidentified eubacterium
           SCB49]
          Length = 151

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 6/150 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +++V   +  P+N G I R ++A      +          + L ++     +HI      
Sbjct: 5   IVLVCPEI--PNNTGNIGRLSLATGAHLHLIKPFGFEISDSRLKRAGLDYWKHIELTIYE 62

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMA 252
           ++ +  +         + LSS   K +      D I L+ G E  GL  +   +   ++ 
Sbjct: 63  SIEEFYKINKDKN--IVLLSSHGDKSVWDIPFEDDIMLLFGKESSGLPAEILKKHPDNLY 120

Query: 253 HLHMPG-IIKALNVSNAAAVALYITQNHFA 281
            + +    I+++N++NA +V +Y      +
Sbjct: 121 KIPLHSDHIRSINIANAVSVTVYEGLRQLS 150


>gi|53719858|ref|YP_108844.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei K96243]
 gi|167816505|ref|ZP_02448185.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei 91]
 gi|217420642|ref|ZP_03452147.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 576]
 gi|52210272|emb|CAH36251.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei K96243]
 gi|217396054|gb|EEC36071.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 576]
          Length = 303

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAVASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|270291465|ref|ZP_06197687.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus
           acidilactici 7_4]
 gi|270280311|gb|EFA26147.1| RNA methyltransferase, TrmH family, group 2 [Pediococcus
           acidilactici 7_4]
          Length = 172

 Score = 62.4 bits (151), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 12/145 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    +    +            L ++     + +  +   NL D L  + 
Sbjct: 13  PANTGNIARTCAGTNAVLHLIKPLGFEISDKTLKRAGLDYWDSVKVVYHDNLPDFLATVK 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA-------LILGAEGKGLRPK-TQETATSMAHLH 255
               +   +S  + K   Q       A        + G E  GL     ++ A     + 
Sbjct: 73  DRK-RLFVVSKFASKAYTQADYTG--AEDDVDNYFLFGKETTGLPETFMRQYADCAIRIP 129

Query: 256 MPG-IIKALNVSNAAAVALYITQNH 279
                I+ALN+SN+ A+ +Y     
Sbjct: 130 QNDQHIRALNLSNSVAIVIYEVLRQ 154


>gi|269794006|ref|YP_003313461.1| rRNA methylase SpoU family [Sanguibacter keddieii DSM 10542]
 gi|269096191|gb|ACZ20627.1| predicted rRNA methylase SpoU family [Sanguibacter keddieii DSM
           10542]
          Length = 157

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A        +            L ++     +        +L   L    
Sbjct: 15  PQNTGNAIRLAAVTGAALHLVEPLGFDLSEPKLKRAGLDYHDLAHLTVQPDLETLLASAP 74

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMAHLHMPGII 260
               +    ++ +              L+ G E  GL  +             + M    
Sbjct: 75  DA--RVFAFTTKATTRYSDVEYRPSDLLVFGPEPTGLSDEVLAHPRITDQ-VKIPMLPSR 131

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN++++A++ +Y       
Sbjct: 132 RSLNLTSSASIVIYEAWRQLG 152


>gi|254197328|ref|ZP_04903750.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei S13]
 gi|169654069|gb|EDS86762.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei S13]
          Length = 309

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLASRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 185


>gi|303248777|ref|ZP_07335029.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           fructosovorans JJ]
 gi|302489864|gb|EFL49793.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           fructosovorans JJ]
          Length = 274

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 18/170 (10%)

Query: 124 PTLDAVRNSQLLMVLDHVNDP-------HNIGAILRSAVAFSCDGIITTKRYS-PSESAV 175
            +L  +RN Q   +L++++          N+GA  R+        ++  +  +   + A 
Sbjct: 12  ASLPTIRNHQTTAMLENLSIVLFRPKFSENVGAAARACANMGVSRLLLVEPSAFDLDRAR 71

Query: 176 LAKSASGALEHIPYIRISNLTDALQ----------KMHSWGFQTIGLSSDSKKPLEQEIK 225
              ++ G L          L +A+           ++  W    I     +         
Sbjct: 72  PMATSKGGLLLEKLEFYPTLAEAVAGAELVFGTTARLGGWRTGIITPEQAAASACPTLAA 131

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             K+A++ G E  GL     +    + ++       +LN++ A  V  Y 
Sbjct: 132 GGKVAVVFGPEDAGLSNHETQLCGRLVNIPTSDAATSLNLAQAVLVMCYE 181


>gi|253999551|ref|YP_003051614.1| TrmH family RNA methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986230|gb|ACT51087.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
           SIP3-4]
          Length = 258

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA--VLAKSASGALEHIPY 189
           S+  +VL   + P NIG+   +A A    G+   K  +P +         A GA++ +  
Sbjct: 13  SRFRVVLCQPSHPGNIGS---TARAMKVMGLHDLKLVNPEKFPDNEANALACGAVDILEN 69

Query: 190 IRI-SNLTDAL----------QKMHSWGFQTIG---LSSDSKKPLEQ-EIKNDKIALILG 234
            ++ S L +AL           +      + +     ++++++ L Q   ++ KIAL+ G
Sbjct: 70  AQVCSTLEEALTGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSADEDSKIALVFG 129

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            E  GL     +    +A +       +LN++ A  V  Y  +
Sbjct: 130 TEMSGLSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVR 172


>gi|303251883|ref|ZP_07338054.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247037|ref|ZP_07529091.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649313|gb|EFL79498.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856489|gb|EFM88638.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 159

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 14/153 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E +   +  N 
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDYHEFVDIQKYKNF 63

Query: 196 TDALQKMHSWGFQTIGLSS-----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
            D L++      +   L++      S+   E         L+ G E +G+     ++   
Sbjct: 64  EDFLERAKPK--RLFALTTKGEPNHSEVSYELGDF-----LMFGPESRGIPMAILDSLPM 116

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +    + M    +++N+SN  AV +Y     F 
Sbjct: 117 SQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQFG 149


>gi|296160421|ref|ZP_06843238.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           Ch1-1]
 gi|295889402|gb|EFG69203.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           Ch1-1]
          Length = 156

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+      ++ 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              + K      +    ++       +         + GAE +GL     +   +     
Sbjct: 64  PAFIAKESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDLVLDQFASEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|327490101|gb|EGF21889.1| TrmH family RNA methyltransferase [Streptococcus sanguinis SK1058]
          Length = 184

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 13/154 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 22  IVLFEPQIPQNTGNIARTCAATNSPLHIIKPMGFPIDDRKMKRAGLDYWDKLNITYYESL 81

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--NDKIALILGAEGKGLRPK-TQETATSMA 252
            + +++M     +   +S  ++K   +E          + G E KGL  +  +       
Sbjct: 82  DNFMEQMDG---RLYLISKFAEKVYSEENFEAEGSHYFMFGREDKGLPEEFMRRHPEKAL 138

Query: 253 HLHMPG-IIKALNVSNAAAVAL--YI--TQNHFA 281
            + M    +++LNVSN   V +  Y    Q +FA
Sbjct: 139 RIPMNDQHVRSLNVSNT--VCMIVYEALRQQNFA 170


>gi|187933079|ref|YP_001887256.1| tRNA/rRNA methyltransferase [Clostridium botulinum B str. Eklund
           17B]
 gi|188589587|ref|YP_001922195.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251780763|ref|ZP_04823683.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|187721232|gb|ACD22453.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           B str. Eklund 17B]
 gi|188499868|gb|ACD53004.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243085078|gb|EES50968.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 153

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +        +   + ++     +++      + 
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTDSKLHLIKPLGFDIDEKHVRRAGLDYWKYLDLEIHESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              ++K  +   +    S+ +     +        ++ G E  G+     E  T M  + 
Sbjct: 65  EAFMEKYKNE--RIFLSSTHAGDYYSEISFQKGDFIMFGRESSGVPESIHEVITGM-RIP 121

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           M     ++LN+SN  ++  Y     F 
Sbjct: 122 MIQSSTRSLNLSNTVSIVAYEALRQFG 148


>gi|56475995|ref|YP_157584.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum
           EbN1]
 gi|56312038|emb|CAI06683.1| RNA methyltransferase CspR (SpoU class) [Aromatoleum aromaticum
           EbN1]
          Length = 154

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G  +R A        +            LA++     +        + 
Sbjct: 4   IVLFQPEIPPNTGNTIRLAANTGARLHLVRPLGFDLSDRQLARAGLDYHDLTTLTVHDDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-SMAH 253
              L  +   G + + LS+  +   +         L+ G E  GL  +  ++        
Sbjct: 64  NACLSAL--AGRRLLALSTKGRTRYDLVDYRADDVLLFGRETSGLPAEVLDSVPDMQTLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA AV ++       
Sbjct: 122 IPMCPANRSVNLSNAVAVVVFEAWRQLG 149


>gi|221235541|ref|YP_002517978.1| SpoU family methyltransferase [Caulobacter crescentus NA1000]
 gi|220964714|gb|ACL96070.1| rRNA methylase, SpoU family [Caulobacter crescentus NA1000]
          Length = 263

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L+      NIG++ R    F    +   +            SASGA   +   ++   
Sbjct: 13  VILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKVFDT 72

Query: 195 LTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDK-IALILGAEGKGL 240
           L  A+  +          ++             +S   L +E+   + + L+ G E  GL
Sbjct: 73  LEAAIADLK----LVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGL 128

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                    ++  + +    ++LN++ A ++  Y 
Sbjct: 129 ETDDIALCQAIVSIPIDERFRSLNLAQAVSINAYE 163


>gi|149376046|ref|ZP_01893812.1| predicted rRNA methylase [Marinobacter algicola DG893]
 gi|149359683|gb|EDM48141.1| predicted rRNA methylase [Marinobacter algicola DG893]
          Length = 154

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        E   + ++     E+      S+ 
Sbjct: 4   VVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFTLEDKQMRRAGLDYSEYATVTVHSDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +  GL++   +        +   L+ G E +GL    +E         
Sbjct: 64  QAFLES--EQPSRLFGLTTKGSRGYHDVEYQNGDYLMFGPETRGLPQDIREAMPEHHRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    ++LN+SN  A+ +Y     F 
Sbjct: 122 VPMRPESRSLNLSNTVALVVYEAWRQFG 149


>gi|146309796|ref|YP_001174870.1| putative tRNA/rRNA methyltransferase YibK [Enterobacter sp. 638]
 gi|145316672|gb|ABP58819.1| RNA methyltransferase, TrmH family, group 2 [Enterobacter sp. 638]
          Length = 157

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E    +R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVVRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              +        +   T G  + S    ++        L+ G E +GL     +   A  
Sbjct: 64  AAFVAAENPQRMFALTTKGTPAHSAVSYQEGDY-----LMFGPETRGLPATILDVLPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|313888215|ref|ZP_07821889.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845905|gb|EFR33292.1| RNA methyltransferase, TrmH family, group 2 [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 154

 Score = 62.4 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 8/141 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GAI R+         +        + + L ++       +      +  + ++K  
Sbjct: 12  PFNTGAIARTCGLTKTRLHLIRPLGFSVDDSHLKRAGLDYWHLVDINYYDSYDELVEKYP 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHM---PGI 259
              F     S+ +KK        D   ++ G E +GL          +   + M    G 
Sbjct: 72  DSNF--YLASTKAKKKYTDVEYKDGDFIVFGPETRGLPEDLIFANYDNAIRIPMLKDFGR 129

Query: 260 IKALNVSNAAAVALYITQNHF 280
             +LN+SN+A + L+      
Sbjct: 130 --SLNLSNSANIILFEALRQL 148


>gi|238760433|ref|ZP_04621571.1| Methyltransferase [Yersinia aldovae ATCC 35236]
 gi|238701328|gb|EEP93907.1| Methyltransferase [Yersinia aldovae ATCC 35236]
          Length = 162

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 15/156 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDY 63

Query: 196 TDALQKMH---SWGFQTIGLS-----SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L       +   +   L+     + S    +         L+ G E +GL P   + 
Sbjct: 64  HAFLDSEKLDSAQPARLFALTTKGTPAHSAVSYQVNDY-----LLFGPETRGLPPTVLDA 118

Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             A     + M    +++N+SNA +V +Y       
Sbjct: 119 LPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQLG 154


>gi|229820769|ref|YP_002882295.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
 gi|229566682|gb|ACQ80533.1| tRNA/rRNA methyltransferase (SpoU) [Beutenbergia cavernae DSM
           12333]
          Length = 167

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 3/115 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R A        +          A L ++     +    +   +L  AL  + 
Sbjct: 16  PGNTGAAIRLAALTGATLHLVEPLGFDMSEAKLRRAGLDYHDLAHVVVHPDLDAALDAV- 74

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHM 256
             G +    +  +++  E        AL+ GAE  GL P+       T    + M
Sbjct: 75  GSGTRVYAFTGHAERSFEDVRYAVGDALLFGAEPTGLPPEVLADPRLTDRVRIPM 129


>gi|319650275|ref|ZP_08004420.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317398026|gb|EFV78719.1| RNA methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 155

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +       ++  +L ++     + +  +   +L
Sbjct: 3   VVLYQPEIPANTGNIARTCAATDTTLHLIRPLGFSTDDKMLKRAGLDYWQFVKIVYHESL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRPKTQETATSMA 252
            D      S G +   L+    KP      +        I G E  GL     E     A
Sbjct: 63  DDFFNS--SEGGEYFYLTKYGTKPHSTFDYSNVGKDYYFIFGKETTGLPKNIIEINKERA 120

Query: 253 -HLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   +++LN+SN AA+ +Y     
Sbjct: 121 LRVPMNDKVRSLNLSNTAAILVYEALRQ 148


>gi|163791007|ref|ZP_02185429.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
 gi|159873746|gb|EDP67828.1| RNA methyltransferase, TrmH family protein [Carnobacterium sp. AT7]
          Length = 169

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 13/152 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N G I R+  A +    +       ++   L ++       +      NL
Sbjct: 5   IALFEPQIPANTGNIARTCAATNTHLHLIEPLGFQTDDKHLKRAGLDYWNEVHITYHKNL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL------ILGAEGKGLRPK-TQETA 248
              ++   +     I  +    +           A+      + G E  GL  +  +E  
Sbjct: 65  AAFMEVAKNGQLHLI--TKFGNRVYSDVDYA---AIEEDHYFLFGKETTGLPEEFMREHE 119

Query: 249 TSMAHLHMP-GIIKALNVSNAAAVALYITQNH 279
                + M    +++LN+SN AA+ ++     
Sbjct: 120 EDCLRIPMNDEHVRSLNLSNTAAILIFEALRQ 151


>gi|109897315|ref|YP_660570.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109699596|gb|ABG39516.1| RNA methyltransferase, TrmH family, group 2 [Pseudoalteromonas
           atlantica T6c]
          Length = 154

 Score = 62.0 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E    +R ++L
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGFALHLIEPLGFEWDDKRVRRAGLDYHEFANVVRHASL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              ++       +    ++       +       AL+ G E +GL     ++        
Sbjct: 64  QAYMESRQPK--RIFACTTKGTTFFAKAEYQLGDALLFGPETRGLPDDVIQSLPPEQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    +++N+SNA +V +Y      
Sbjct: 122 IPMLPDSRSMNLSNAVSVFVYEAWRQL 148


>gi|167581379|ref|ZP_02374253.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis TXDOH]
          Length = 306

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 36  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 95

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IA + G E  GL
Sbjct: 96  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIAFVFGNERTGL 151

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 152 SNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188


>gi|149200214|ref|ZP_01877236.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149136656|gb|EDM25087.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 151

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 7/142 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R  V    D  +        +   + K+      H+      +  D L    
Sbjct: 11  PQNTGTIGRLTVCTDNDLHLIKPLGFELDEKKIKKAGMDYWPHVKLHIHESWEDFLNNTP 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPGIIKA 262
                    +   K   E     D   LI G E  GL P+  E    S+  + M G    
Sbjct: 71  EDKTMVFCTTKCKKTIYEHTFTEDDY-LIFGNESHGLPPEFYENFQDSLCTIPMRG--DH 127

Query: 263 L---NVSNAAAVALYITQNHFA 281
           L   N++N+ ++  Y      +
Sbjct: 128 LRSHNLANSVSIVTYEAIRQIS 149


>gi|25011677|ref|NP_736072.1| hypothetical protein gbs1637 [Streptococcus agalactiae NEM316]
 gi|77407097|ref|ZP_00784097.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae H36B]
 gi|77414904|ref|ZP_00791009.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 515]
 gi|24413217|emb|CAD47296.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77159049|gb|EAO70255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 515]
 gi|77174292|gb|EAO77161.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae H36B]
 gi|319745537|gb|EFV97839.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
           13813]
          Length = 182

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 20  IVLFEPQIPANTGNIARTCAATNAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + +          I   +D     E    +     + G E KGL     +E A     +
Sbjct: 80  EEFMLSCRGK-VHLISKFADKVYSDENYNDDQDHYFMFGREDKGLPETFMREHAEKALRI 138

Query: 255 HMP-GIIKALNVSNAAAVAL--YITQNH 279
            M    +++LNVSN   V +  Y     
Sbjct: 139 PMNDEHVRSLNVSNT--VCMIVYEALRQ 164


>gi|15838566|ref|NP_299254.1| tRNA/rRNA methylase [Xylella fastidiosa 9a5c]
 gi|9107078|gb|AAF84774.1|AE004016_8 tRNA/rRNA methylase [Xylella fastidiosa 9a5c]
          Length = 148

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ++R          +        +   L ++     E+       NL+ AL  + 
Sbjct: 9   PPNTGNVIRLCANTGARLHLIEPLGFDLDDRRLKRAGLDYHEYARMQVHPNLSSALAAIA 68

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
               +   LS+  +   +    +   A I G E +GL      T   +   +L M    +
Sbjct: 69  PR--RLFALSTRGQMRYDTPTFSTGDAFIFGPETRGLPDTVLHTIPESQRLYLPMQPQSR 126

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SNA AV ++     
Sbjct: 127 SLNLSNAVAVMVFEAWRQ 144


>gi|167563307|ref|ZP_02356223.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           oklahomensis EO147]
 gi|167570479|ref|ZP_02363353.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           oklahomensis C6786]
          Length = 291

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 36  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEALAMASGADDVLASAHVVP 95

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      +I L++ S++                ++++   IAL+ G E  GL
Sbjct: 96  TLADALNGVQ----WSIALTARSREYGPPRLAPRAAAASARRQLQTGDIALVFGNERTGL 151

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +  +++AH+       +LN++ A  V  Y  +
Sbjct: 152 SNEHVDRCSAIAHIPANPAYSSLNLAQAVQVLAYELR 188


>gi|46143316|ref|ZP_00135490.2| COG0219: Predicted rRNA methylase (SpoU class) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207549|ref|YP_001052774.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975518|ref|YP_001651111.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149330|ref|YP_001967855.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250539|ref|ZP_07336736.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244862|ref|ZP_07526961.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307249259|ref|ZP_07531256.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251582|ref|ZP_07533489.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253816|ref|ZP_07535670.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256081|ref|ZP_07537869.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258272|ref|ZP_07540015.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260513|ref|ZP_07542207.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262643|ref|ZP_07544273.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|126096341|gb|ABN73169.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875619|gb|ABY68667.1| probable tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189914461|gb|ACE60713.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302650527|gb|EFL80686.1| putative tRNA/rRNA methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854307|gb|EFM86513.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306858783|gb|EFM90842.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861046|gb|EFM93052.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863300|gb|EFM95240.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865503|gb|EFM97398.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867732|gb|EFM99577.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869825|gb|EFN01608.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306872066|gb|EFN03780.1| tRNA/rRNA methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 159

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 14/153 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E +   +  N 
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFAWDDKKLRRSGLDYHEFVDIQKYKNF 63

Query: 196 TDALQKMHSWGFQTIGLSS-----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
            D L++      +   L++      S+   E         L+ G E +G+     +    
Sbjct: 64  EDFLERAKPK--RLFALTTKGEPNHSEVSYELGDF-----LMFGPESRGIPMTILDNLPM 116

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +    + M    +++N+SN  AV +Y     F 
Sbjct: 117 SQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQFG 149


>gi|301111568|ref|XP_002904863.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262095193|gb|EEY53245.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 216

 Score = 62.0 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A  + +L MVL + +   N+G  LR+A AF    ++          A+    ++ + E  
Sbjct: 7   AAGSVELYMVLSNKSGRQNLGTYLRTASAFGTTQVLVG----DGLRALRYSWSTPSAEVR 62

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                 + T+A   + + G    GL++ +  P E        A ++  E  GL  + +  
Sbjct: 63  GCCAFYDFTEARGYLKTKGCTIFGLTAHA-TPYE-----GTSAFVIDNEFPGLSEEQRAI 116

Query: 248 ATSMAHLHMPG 258
                H+   G
Sbjct: 117 CDHFVHVPFHG 127


>gi|322499488|emb|CBZ34561.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 519

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 61/203 (30%), Gaps = 63/203 (31%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH--IPYIRIS 193
           +VL  +  P N+G +LR+A     D  +     +      + +++ G      +      
Sbjct: 285 LVLVGLRIPSNVGTLLRAAADMGYDAAVLVS-CADPTQEKVLRASDGTALSPTLRIYETE 343

Query: 194 NLTDALQKMH--------------------------SWGFQTI---------------GL 212
               A   +                           +  F                   +
Sbjct: 344 TTEQACVSLLSSIAAQHHLMPFLAVPSQEVESAFEVAKRFHVYNAKSKEAATSQVSGGAV 403

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLR--------PKTQETATSMAHLHMPG-IIKAL 263
           +  S        K     +ILG+E +GLR        P        +  L +   ++ + 
Sbjct: 404 AGHSDGLCAAPTKQLGAMVILGSEAQGLRGLNGRWGVPY------QLVTLPLSNPMVDSF 457

Query: 264 NVSNAAAVALYITQ----NHFAK 282
           NVS A +V +++ +    +HF +
Sbjct: 458 NVSVAGSVLMHLFRPSAASHFTR 480


>gi|144227485|gb|AAZ44230.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 174

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 12/145 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHS 204
           N G I+RS         I        E   L + A+G L   I +    N  +  +K   
Sbjct: 14  NTGNIIRSCFVAGLKLHIIMPIAFDLEPKHLKRPAAGILLSEIEHEIHKNWQNFSEKYGQ 73

Query: 205 WG---FQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ----ETATSMAHLHM 256
                    G    ++     EI+  K I  + G E  G+  +      E       + M
Sbjct: 74  KNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKKNKEKC---LRIPM 130

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
               ++LN++N   +  Y       
Sbjct: 131 IAKARSLNLANTVVIIAYEFHRQLN 155


>gi|126441973|ref|YP_001059578.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|126221466|gb|ABN84972.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           pseudomallei 668]
          Length = 303

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPRVQSDPEALAMASGADDVLASAHVVP 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +      ++ L++ S++                Q+++   IAL+ G E  GL
Sbjct: 93  TLADALNGVQ----WSLALTARSREYGPPRLAPRAAAASALQQVRTGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++A +       +LN++ A  V  Y  +
Sbjct: 149 SNEHVERCSAIAQIPANPAYSSLNLAQAVQVLAYELR 185


>gi|217970682|ref|YP_002355916.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
 gi|217508009|gb|ACK55020.1| RNA methyltransferase, TrmH family, group 1 [Thauera sp. MZ1T]
          Length = 245

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 23/158 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIGA  R+        +      S  +    A+++ GA + +   R+   
Sbjct: 12  VVLSRTTHPGNIGAAARAMKTMGLRELWLVAPESFPDEVATARAS-GAADLLDAARVVGT 70

Query: 195 LTDALQKMHSWGFQTIGLSS---------------DSKKPLEQEIKNDKIALILGAEGKG 239
           L +AL             +                D+   L +  ++  +AL+ G E  G
Sbjct: 71  LEEALAD------TVFSAALTARRRELSLPRLQARDAALELVRRTQDGAVALVFGNETSG 124

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +     +    +       +LN+  A  V  Y  +
Sbjct: 125 LTNEEAALCSLPVTIPTDAGFSSLNLGAAVQVLAYELR 162


>gi|237836581|ref|XP_002367588.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
 gi|211965252|gb|EEB00448.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
          Length = 554

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 34/161 (21%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV------- 141
           H      V  + + KI G  +   G   E      P   +  + +LL+ L          
Sbjct: 271 HGVETHFVTDRILRKIAGLHSYDGGCVAEMR--HPPPAASFGDMKLLLCLGRPPNSFCET 328

Query: 142 -----------NDPHN--------IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                       D  N        +G ILRSA A    G+    +     + +  +++ G
Sbjct: 329 DTACSSFKGLEEDTDNFERLMLGILGTILRSAAALQWQGVWLLPQCPDVFNPLAIRASQG 388

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQT-----IGLSSDSKK 218
           AL  +PY R  +  D ++               GL   S +
Sbjct: 389 ALFWLPYRR-GSWDDFVKFTSEQDLLICIPHEAGLDVHSSE 428


>gi|297526044|ref|YP_003668068.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
           12710]
 gi|297254960|gb|ADI31169.1| tRNA/rRNA methyltransferase (SpoU) [Staphylothermus hellenicus DSM
           12710]
          Length = 231

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 21/158 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL  V    N+G I R+ V FS D +   K  +        + A+ A +++   I + +
Sbjct: 5   VVLVGVEGSVNLGFIARTCVNFSVDELYLVKPAADL--GEALRYAAKARDYLKKAIIVDD 62

Query: 195 LTDALQKMHSWGFQTIGLSSDSK------------KPLEQEIKND--KIALILGAEGKGL 240
           L DA++ +       +  ++               K     I+    ++A++ G E  GL
Sbjct: 63  LADAIRDVD----LVVATTAKGYSVGDVVRQAVPLKDFADMIRGRVNRLAILFGRESTGL 118

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             K    A  +  +        LN+S A AV L+   N
Sbjct: 119 TRKELRYADVLVTIPANPEYPVLNLSQAVAVFLWEIWN 156


>gi|332686349|ref|YP_004456123.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
           ATCC 35311]
 gi|332370358|dbj|BAK21314.1| tRNA (cytosine 34-2'-O-)-methyltransferase [Melissococcus plutonius
           ATCC 35311]
          Length = 168

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 10/154 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      NL
Sbjct: 5   IVLFEPQIPANTGNIARTCAATNTALHLIEPLGFSTDDKHLKRAGLDYWSKVEITYYENL 64

Query: 196 TDALQKMHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSM 251
              L ++       I   ++   S+   + + ++     I G E  GL     ++     
Sbjct: 65  PSFLNELGDKPLHLITKFANQIYSEINYDDDQEHY---FIFGKETTGLPETFMRQNKEKC 121

Query: 252 AHLHMPG-IIKALNVSNAAAVALYI--TQNHFAK 282
             + M    +++LN+SN AA+ +Y    Q  F K
Sbjct: 122 LRIPMNDQHVRSLNLSNTAALVIYEALRQQRFPK 155


>gi|110180258|gb|ABG54368.1| YibK [Klebsiella pneumoniae]
          Length = 147

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 11/144 (7%)

Query: 144 PHNIGAILRSAVAFSCD-GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           P N G I+R             ++  SP +   L ++     E     R ++    +   
Sbjct: 1   PPNTGNIIRLCANTGFSLAYHLSRWASPWDDKRLRRAGLDYHEFTAVQRHADYAAFVASA 60

Query: 203 HSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMP 257
                    T G  + S    +         L+ G E +GL     +         + M 
Sbjct: 61  QPQRLFALTTKGTPAHSAVSYQDGDF-----LMFGPETRGLPASILDALPPEQKIRIPMM 115

Query: 258 GIIKALNVSNAAAVALYITQNHFA 281
              +++N+SNA +V +Y       
Sbjct: 116 PDSRSMNLSNAVSVVVYEAWRQLG 139


>gi|90417478|ref|ZP_01225401.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2207]
 gi|90330719|gb|EAS45998.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2207]
          Length = 248

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R + + +VL +   P NIG   R+        +   +         + + A+GA + +  
Sbjct: 6   RQANIRIVLVNTTHPGNIGGAARAMKNMGLAELYLVQPREYPAPRAVWR-AAGARDVLAG 64

Query: 190 IR-ISNLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGA 235
              + ++ +A+          +G S+  ++              +  E    K AL+ G 
Sbjct: 65  ATIVESVDEAIADCA----LVVGTSARERRIPWPLLNPRECGEKIYSEAAEHKTALLFGR 120

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           E +GL     +      H+       +LN++ A  V  Y  +
Sbjct: 121 EDRGLTNDELQKCHYHVHIPSNPDYSSLNLATAVQVLAYEVR 162


>gi|283835989|ref|ZP_06355730.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
           ATCC 29220]
 gi|291068169|gb|EFE06278.1| RNA methyltransferase, TrmH family, group 2 [Citrobacter youngae
           ATCC 29220]
          Length = 157

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E    +R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRHPDY 63

Query: 196 TDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              +   H        T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFVAAEHPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDVLPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|319948750|ref|ZP_08022870.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
 gi|319437583|gb|EFV92583.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
          Length = 163

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++ D    P N G  +R A    C+  +            L ++     +        +L
Sbjct: 8   VLFDRPCIPPNTGNAIRMAAGAGCELHLAGPLGFDLSEPHLRRAGLDYHDLAHVEVHEDL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
             A  ++     +    S+ +   L Q        L+ G E  GL          T+   
Sbjct: 68  ESAYSRL--LPARVWAFSARADLALPQVRFAPGDVLLFGPEPTGLAEDVLADPRVTARVR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    +++N+SNAAAVA+Y     
Sbjct: 126 IPMLPGRRSMNLSNAAAVAVYEAWRQ 151


>gi|57504963|ref|ZP_00370915.1| rRNA methylase [Campylobacter coli RM2228]
 gi|305432038|ref|ZP_07401205.1| TrmH family RNA methyltransferase [Campylobacter coli JV20]
 gi|57019235|gb|EAL55941.1| rRNA methylase [Campylobacter coli RM2228]
 gi|304445122|gb|EFM37768.1| TrmH family RNA methyltransferase [Campylobacter coli JV20]
          Length = 155

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     E +  +   +L
Sbjct: 4   IVLIHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAVRRAGLDYWEKLEPVIWESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
              L+    +  +    ++ S K   Q    +   L  G+E  GL  +  +    +   +
Sbjct: 64  DIFLEHNLIYKDRFFFATTKSNKFYFQAKFQENDFLFFGSESYGLPMELMQLNWDNAITI 123

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN++ +  +  Y     
Sbjct: 124 PMKACGRSLNLATSVGIVSYEALRQ 148


>gi|170694941|ref|ZP_02886090.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
           C4D1M]
 gi|170140039|gb|EDT08218.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia graminis
           C4D1M]
          Length = 378

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 112 VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAMASGADDVLASAHVVP 171

Query: 194 NLTDALQKMHSWGFQTIGLSSD-------------SKKPLEQEIKNDKIALILGAEGKGL 240
            L DAL  +H     +I L++              +      E  + +IAL+ G E  GL
Sbjct: 172 TLADALSGVH----WSIALTARQREYGPPQWTPRAAASLARDEALHGEIALVFGNERTGL 227

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 228 SNEDVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 264


>gi|33591801|ref|NP_879445.1| rRNA methylase [Bordetella pertussis Tohama I]
 gi|33571444|emb|CAE44927.1| rRNA methylase [Bordetella pertussis Tohama I]
 gi|332381218|gb|AEE66065.1| rRNA methylase [Bordetella pertussis CS]
          Length = 156

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G  +R          +        + A L ++     E  P      L
Sbjct: 4   VVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDTL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
             AL    +   +   L++ ++  L           + G E  GL          A  + 
Sbjct: 64  PQALAATGAAAPRIFALTTRARTSLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQQL- 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV ++     
Sbjct: 123 RLPMRPGQRSLNLSNAVAVTVFEAWRQ 149


>gi|153952499|ref|YP_001398024.1| RNA methyltransferase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939945|gb|ABS44686.1| RNA methyltransferase, TrmH family [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 155

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  I   NL
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAVRRAGLDYWDKLEPIIWENL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            + L +   +  +    ++ S+K            L  G+E  GL  +  +        +
Sbjct: 64  EEFLNENMIYKNRFFFATTKSRKAYFNTEFQKNDFLFFGSESYGLPMELMQLNWKNAITI 123

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  +  Y     
Sbjct: 124 PMKSYGR--SLNLATSVGIISYEALRQ 148


>gi|209694342|ref|YP_002262270.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238]
 gi|208008293|emb|CAQ78439.1| rRNA methylase (SpoU_methylase) [Aliivibrio salmonicida LFI1238]
          Length = 171

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 61/155 (39%), Gaps = 12/155 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++N+ + + L +   P N+GA++R+A  +  D +  T       +     +   A+  IP
Sbjct: 1   MKNTHVTIGLSNPKSPTNVGAVMRAAGCYQVDDVRYTGERYDRATKFQTDT-KKAVNKIP 59

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +  L D L        + + +   +    L +    DK   + G E   +  +  + 
Sbjct: 60  LTSVECLLDNLAD----DMKIVCVELAEGAVSLPEFKHPDKAIYVFGPEDGSITQQVADR 115

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A  + ++   G +   N++    V LY   +  AK
Sbjct: 116 ADHVVYIPTVGCM---NLAATVNVLLY---DRLAK 144


>gi|223935595|ref|ZP_03627511.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
 gi|223895603|gb|EEF62048.1| tRNA/rRNA methyltransferase (SpoU) [bacterium Ellin514]
          Length = 155

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+     P N G + R   A      +        +   L ++     + + + + +N 
Sbjct: 3   IVMVEPEIPPNTGNVARLCAATKTRLHLIEPLGFKLDDKQLKRAGMDYWQQVEWRQWANW 62

Query: 196 TDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAH 253
               +++        +   SD  +   +     +  L+ G E  GL     +E       
Sbjct: 63  KTFCEQLPADARLWFV--ESDGPRLYTEVQYLPEDYLVFGRETAGLPKQLLKENPERWLR 120

Query: 254 LHMPGIIKA--LNVSNAAAVALYITQNH 279
           L M    ++  LN+SN AA+ L+     
Sbjct: 121 LPMF-NAESRSLNLSNCAAIVLFEALRQ 147


>gi|2191177|gb|AAB61063.1| belongs to the SPOU family of rRNA methylases [Arabidopsis
           thaliana]
          Length = 271

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 56/182 (30%), Gaps = 37/182 (20%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE-------------- 172
           +  R+  L +VL     P N G I R+  A +  G+                        
Sbjct: 75  EDARSKLLHVVLVSPQIPGNTGCIARTCAASAV-GLHLVGVNVDDLICHLFLLQPLGFQV 133

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD------SKKPLEQEIKN 226
                K A G        R +N     +K +   F+   ++S+          ++     
Sbjct: 134 DDARVKRAGG--------RKTN-DSFYKKRNKDTFKIATITSNWVAENNGYNLMQDFSYR 184

Query: 227 DKIALILGAEGKGLRPKTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNH 279
               L+ G+E  GL P+                + M    ++ LN+S +  +ALY     
Sbjct: 185 SGDYLLFGSETSGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQ 244

Query: 280 FA 281
             
Sbjct: 245 LN 246


>gi|197335061|ref|YP_002155413.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
 gi|197316551|gb|ACH65998.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
          Length = 171

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 18/158 (11%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALE 185
           ++ + + + L +   P N+GA++R+A  +  D +  T      +        K AS    
Sbjct: 1   MKKTHVTIGLSNPKSPTNVGAVMRAAGCYQVDDVRYTGERYDRAAKFQTDTKKVAS---- 56

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            IP   ++ L D L +      + + +   +    L Q    DK   + G E   +  + 
Sbjct: 57  KIPLTSVNCLLDDLPE----DMKVVCVELAEGAVSLPQFQHPDKAIYVFGPEDGSITQQV 112

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + A  + ++   G +   N++    V LY   +  AK
Sbjct: 113 ADRADHVVYIPTVGCM---NLAATVNVLLY---DRLAK 144


>gi|331009172|gb|EGH89228.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 257

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L DAL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEDALVGCR----LVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|299689343|pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis
 gi|299689345|pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In
           Complex With S- Adenosyl-L-Homocysteine.
 gi|299689346|pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In
           Complex With S- Adenosyl-L-Homocysteine
          Length = 165

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 15/161 (9%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N+ L +VL     P N G I+R      C   +        +   L ++     E     
Sbjct: 2   NAMLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIK 61

Query: 191 RISNLTDAL--QKM------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              +    L  +K+        +   T G  + S    +         L+ G E +GL  
Sbjct: 62  HHHDYQAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDY-----LLFGPETRGLPA 116

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +   A     + M    +++N+SNA +V +Y       
Sbjct: 117 YILDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 157


>gi|33595003|ref|NP_882646.1| rRNA methylase [Bordetella parapertussis 12822]
 gi|33565079|emb|CAE40030.1| rRNA methylase [Bordetella parapertussis]
          Length = 172

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G  +R          +        + A L ++     E  P      L
Sbjct: 20  VVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDTL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
             AL    +   +   L++ +   L           + G E  GL          A  + 
Sbjct: 80  PQALAATGAAAARVFALTTRAPASLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQQL- 138

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV ++     
Sbjct: 139 RLPMRPGQRSLNLSNAVAVTVFEAWRQ 165


>gi|238794389|ref|ZP_04638000.1| Methyltransferase [Yersinia intermedia ATCC 29909]
 gi|238726290|gb|EEQ17833.1| Methyltransferase [Yersinia intermedia ATCC 29909]
          Length = 165

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 15/156 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHHDY 63

Query: 196 TDAL--QKMHSW------GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L  + + S          T G  + S    + +       L+ G E +GL     + 
Sbjct: 64  QAFLDCENLDSAQPARLFALTTKGTPAHSAVSYQADDY-----LLFGPETRGLPASVLDA 118

Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             A     + M    +++N+SNA +V +Y       
Sbjct: 119 LPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 154


>gi|23011594|ref|ZP_00051908.1| COG0219: Predicted rRNA methylase (SpoU class) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 175

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 5/118 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G +LR A        I            L +S    L+H+   R  +         
Sbjct: 12  PQNTGTMLRMAACLGVAVEIIEPAGFDVSDRHLRRSGLDYLDHVAITRHRSWDAFEAWRR 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
             G + +  ++    P       D   L++G E  G+       A         G   
Sbjct: 72  EAGIRLVLATTRGSVPYTDHAFRDGDCLMMGRESAGVPEPVHA-ADRCPR----GGAD 124


>gi|331005926|ref|ZP_08329274.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
 gi|330420282|gb|EGG94600.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC1989]
          Length = 276

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 24/173 (13%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           +P     L ++R     +VL + + P NIG + R+        +               +
Sbjct: 9   SPESIKALQSIR-----IVLVNTSHPGNIGGVARAMKNMGLTELYLVSPKDYPSERAEWR 63

Query: 179 SASGALEHIPYIRISNLTDALQ-KMHSWGFQTIGLSSDSKK---PL----------EQEI 224
           ++      +  ++ + + D L   +   G   IG S+ +++   PL            E 
Sbjct: 64  AS----NALDVLQSATVVDTLDDAIADCGL-VIGTSARARRIPWPLVTPRECADRSYHES 118

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +A++ G E +GL  +         H+       +LN++ A  V  Y  +
Sbjct: 119 STHPVAIVFGREDRGLTNEELHKCNYHVHIPSNPDYSSLNLAAAVQVIAYEVR 171


>gi|257487213|ref|ZP_05641254.1| RNA methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|330985000|gb|EGH83103.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 257

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L DAL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEDALVGCR----LVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|167626500|ref|YP_001677000.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596501|gb|ABZ86499.1| RNA methyltransferase, SpoU family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 163

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   L ++     E        N  +  QK  
Sbjct: 20  PPNTGNIIRLCANAGAKLHLIEPLGFKLEDKQLRRAGLDYHEFADLKIYKNFDEFYQKNK 79

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
                    ++ +K+   Q   N    L+ G E +GL     +        + M    ++
Sbjct: 80  QNKIW--ACTTKAKQYYHQVNFNYDDILLFGPETRGLPIDVLKLLEKTQLKIPMHKNSRS 137

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 138 LNLSNSVAVILYGALNNIG 156


>gi|295103485|emb|CBL01029.1| Predicted rRNA methylase (SpoU class) [Faecalibacterium prausnitzii
           SL3/3]
          Length = 168

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 4/152 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L +VL     P N G + R+    +C   +        +   L  +      ++ 
Sbjct: 2   MDKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYLD 61

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ET 247
                 L D      + G      ++ + +        D   L+ G E  GL      E 
Sbjct: 62  ITYYDGLADFFA--RNNG-PYYYFTTKAPQRYTDVQYPDGAYLVFGREDAGLPEALLAEN 118

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M    ++LN+SN+ AV +Y     
Sbjct: 119 QEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150


>gi|160942978|ref|ZP_02090216.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445672|gb|EDP22675.1| hypothetical protein FAEPRAM212_00455 [Faecalibacterium prausnitzii
           M21/2]
          Length = 168

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 4/152 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L +VL     P N G + R+    +C   +        +   L  +      ++ 
Sbjct: 2   MDKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYLD 61

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ET 247
                 L D      + G      ++ + +        D   L+ G E  GL      E 
Sbjct: 62  ITYYDGLADFFA--RNNG-PYYYFTTKAPQRYTDVQYPDGAYLVFGREDAGLPEALLVEN 118

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 + M    ++LN+SN+ AV +Y     
Sbjct: 119 QEHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150


>gi|119946348|ref|YP_944028.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
 gi|119864952|gb|ABM04429.1| tRNA/rRNA methyltransferase (SpoU) [Psychromonas ingrahamii 37]
          Length = 175

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +  +++L+ L +   P N+GA++R+A  ++ DG++ T       +  L          IP
Sbjct: 1   MAKNKVLIALINPKSPTNVGAVMRAAGCYAVDGVLYTGNRYA-LTMKLKTDTKNISATIP 59

Query: 189 YIRISNLTDALQK-MHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQ 245
                +L + L +   +   + + +   +   PL   I  +K   I G E  G ++    
Sbjct: 60  LRNEPDLLNNLSENYSNNDIKVVCVDLIEGATPLPNFIHPEKALYIFGPE-DGTIKQSVV 118

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A ++ ++   G    LN++    V LY   +  AK
Sbjct: 119 NQADAVVYIPTIGC---LNLAATVNVVLY---DRLAK 149


>gi|88858499|ref|ZP_01133141.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Pseudoalteromonas tunicata D2]
 gi|88820116|gb|EAR29929.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Pseudoalteromonas tunicata D2]
          Length = 249

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 25/154 (16%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-- 189
           + + +VL + +   NIG++ R+        +          + + + +++ A        
Sbjct: 4   NDIRVVLVNTSHTGNIGSVARAMKTMGLSKLYL----VDPVNQIDSHASALAAGATDVLG 59

Query: 190 --IRISNLTDALQKMHSWGFQTIGLSSDSKK-------------PLEQEIKNDKIALILG 234
             + + +L  A+          IG S+ S+               L    K   +AL+ G
Sbjct: 60  NAVVVDDLAQAIADCS----LVIGTSARSRTLSWPMVEPRECGQMLVDGAKKGPVALVFG 115

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            E  GL  +  +       +       +LN++ A
Sbjct: 116 RENSGLSNEELQMCHYHVCIPANPEYSSLNLAMA 149


>gi|322390062|ref|ZP_08063597.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
 gi|321143189|gb|EFX38632.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 903]
          Length = 180

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 17  IVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPK-TQETATSMA 252
            + ++         +  S  + +        D      + G E KGL     ++      
Sbjct: 77  EEFMEAARDGQVHLV--SKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEEKAI 134

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            + M    +++LNVSN   V +  Y     
Sbjct: 135 RIPMNDEHVRSLNVSNT--VCMIVYEALRQ 162


>gi|259048232|ref|ZP_05738633.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
           ATCC 49175]
 gi|259035293|gb|EEW36548.1| TrmH family group 2 RNA methyltransferase [Granulicatella adiacens
           ATCC 49175]
          Length = 169

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 56/151 (37%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      ++
Sbjct: 6   IVLFEPQIPANTGNIARTCAATNSPLHLIEPLGFSTDDKHLKRAGLDYWHDVDITYHKSM 65

Query: 196 TDALQKMHSWGFQTIG-LSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAH 253
              L  +       I   ++ +   ++     ++   + G E  GL  +  +E       
Sbjct: 66  EAFLDYLGERPLYLITKFANHTYDEVDLARDEEQF-FMFGKETTGLPEEFMRENEEKCLR 124

Query: 254 LHMPG-IIKALNVSNAAAVALYI--TQNHFA 281
           L M    +++LN+SN AA+ +Y    Q  FA
Sbjct: 125 LPMNDTHVRSLNLSNTAAIVVYEALRQQRFA 155


>gi|90580897|ref|ZP_01236699.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14]
 gi|90437968|gb|EAS63157.1| putative rRNA methylase, SpoU family protein [Vibrio angustum S14]
          Length = 154

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 4/137 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R +     +  +        +   + ++     +     R  +    +Q M   
Sbjct: 14  NTGNIIRLSANCGANLHLIEPLGFDLDEKKVRRAGLDYHDLAHVHRHKDFAAFMQAM--E 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKAL 263
           G +    ++ +              L+ G E +GL  +   +        + M    ++L
Sbjct: 72  GRRIFACTTKTTNFHTNAKFEQGDVLLFGPETRGLPAEFIASLPLEQRLRIPMQPDSRSL 131

Query: 264 NVSNAAAVALYITQNHF 280
           N+SNA A+  +      
Sbjct: 132 NLSNAVAIISFEAWRQM 148


>gi|33599281|ref|NP_886841.1| rRNA methylase [Bordetella bronchiseptica RB50]
 gi|33575327|emb|CAE30790.1| rRNA methylase [Bordetella bronchiseptica RB50]
          Length = 172

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G  +R          +        + A L ++     E  P      L
Sbjct: 20  VVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDTL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
             AL    +   +   L++ +   L           + G E  GL          A  + 
Sbjct: 80  PQALAATGAAAARVFALTTRAPASLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQQL- 138

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV ++     
Sbjct: 139 RLPMRPGQRSLNLSNAVAVTVFEAWRQ 165


>gi|307824418|ref|ZP_07654643.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
           tundripaludum SV96]
 gi|307734402|gb|EFO05254.1| RNA methyltransferase, TrmH family, group 1 [Methylobacter
           tundripaludum SV96]
          Length = 246

 Score = 61.2 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIGA+ R+        +          SA     ASGA + +    + + 
Sbjct: 7   IVLVETTHPGNIGAVARAMKNMKMHNLWLVAPKIFP-SADATSRASGADDVLAGATVCAT 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEGKGLR 241
           L +A+          IG S+  +     E+               +K+A++ G E  GL+
Sbjct: 66  LQEAIADCQ----VVIGASARGRTISWPEMTPRECAEKVLINEPGNKVAIVFGRENSGLK 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               +    +  +       +LN++ AA V  Y  
Sbjct: 122 NHELDLCHFLLRIPCNSEYSSLNIAAAAQVVCYEL 156


>gi|77412361|ref|ZP_00788672.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae CJB111]
 gi|77161581|gb|EAO72581.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae CJB111]
          Length = 182

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      I      P +   + ++     + +      +L
Sbjct: 20  IVLFEPQIPANTGNIARTCAATXAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + +          I   +D     E    +     + G E KGL     +E A     +
Sbjct: 80  EEFMLSCRGK-VHLISKFADKVYSDENYNDDQDHYFMFGREDKGLPETFMREHAEKALRI 138

Query: 255 HMP-GIIKALNVSNAAAVAL--YITQNH 279
            M    +++LNVSN   V +  Y     
Sbjct: 139 PMNDEHVRSLNVSNT--VCMIVYEALRQ 164


>gi|224540931|ref|ZP_03681470.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526164|gb|EEF95269.1| hypothetical protein CATMIT_00082 [Catenibacterium mitsuokai DSM
           15897]
          Length = 170

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 8/148 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL H   P N G I+R+  A      I            + ++     +H+ + +  + 
Sbjct: 4   VVLVHPAIPQNTGNIMRTCAATHTPLHIIKPTGFKLNDPRMKRAVMDYFDHLTFKVYENF 63

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQET-ATSM 251
                +    + F T      SKK   ++      +  L  G E  G+     +      
Sbjct: 64  EEFEKENPGIYHFFT----RYSKKVYSEDDFKQEGEHYLFFGHEHDGIPHDILKKYIDDC 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M G  ++LN+SN  A+ +Y     
Sbjct: 120 VRIPMYGDSRSLNLSNTVAIGVYEALRQ 147


>gi|242310580|ref|ZP_04809735.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522978|gb|EEQ62844.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 158

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 8/153 (5%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  +VL     P N G I R   A +    +            L ++     +H+     
Sbjct: 3   RFHIVLHQPRIPQNTGNIGRLCFASNSILHLIYPLGFHLTQKELKRAGMDYWQHLEVYEW 62

Query: 193 SNLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            NL   +    ++   F    L++ ++KP      +    L  G E  GL  K  +    
Sbjct: 63  ENLESFMSSSLLNLPHFY---LTTKTQKPYYNANLSKGAYLHFGREDAGLDTKILQAKQQ 119

Query: 251 -MAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
               + M    ++LN++ +  + LY    Q  F
Sbjct: 120 DCYTIPMQNNARSLNLATSVGIVLYEGIRQRDF 152


>gi|322804485|emb|CBZ02035.1| tRNA (cytosine34-2'-O-)-methyltransferase [Clostridium botulinum
           H04402 065]
          Length = 155

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   L ++     +++      + 
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
            +  +K     F     ++            D   ++ G E  GL  + ++ +       
Sbjct: 65  EELREKYKDSNF--YFSTTHGNNFYTDVKYRDGDFIVFGRESSGLPDEIRD-SDPSKCIR 121

Query: 254 LHMPGIIK-ALNVSNAAAVALYITQNHFA 281
           + M      +LN+SN  AV  Y       
Sbjct: 122 IPMINTTTRSLNLSNTVAVVTYEALRQVG 150


>gi|322835014|ref|YP_004215041.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602]
 gi|321170215|gb|ADW75914.1| RNA methyltransferase, TrmH family, group 2 [Rahnella sp. Y9602]
          Length = 157

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E       +N 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFGWDDKRLRRAGLDYHEFAHIKHHANY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L        +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  DAFLSSENPQRLFALTTKGTPAHSAVSYQDNDF-----LLFGPETRGLPASILDNLPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMRAESRSMNLSNAVSVVVYEAWRQLG 149


>gi|300786824|ref|YP_003767115.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
 gi|299796338|gb|ADJ46713.1| RNA methyltransferase CspR [Amycolatopsis mediterranei U32]
          Length = 155

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A    C+  +        E   L ++     +       ++L  A + + 
Sbjct: 12  PPNTGNAIRLAANTGCELHLVEPLGFTLEDKQLRRAGLDYHDLARVRVHASLVAAWEVL- 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +    ++ + +            L+ G E  GL    QE    T    L M    +
Sbjct: 71  -LPAKVYAFTASATRLYTDVAYTPGDVLMFGPESVGLPAAVQEAPEVTDRVRLPMLPTSR 129

Query: 262 ALNVSNAAAVALY--ITQNHFA 281
           +LN++N AA+ +Y    QN FA
Sbjct: 130 SLNLANTAAITVYEAWRQNGFA 151


>gi|238764459|ref|ZP_04625407.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
 gi|238697271|gb|EEP90040.1| Methyltransferase [Yersinia kristensenii ATCC 33638]
          Length = 167

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 48/161 (29%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHDY 63

Query: 196 TDALQKMHSWG-------------FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L      G               T G  + S    +         L+ G E +GL P
Sbjct: 64  QAFLDSEKLDGAQSTGANAARLFALTTKGTPAHSAVEYQLNDY-----LLFGPETRGLPP 118

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              E   A     + M    +++N+SNA +V +Y       
Sbjct: 119 NVLEALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQLG 159


>gi|224824740|ref|ZP_03697847.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
           2002]
 gi|224603233|gb|EEG09409.1| RNA methyltransferase, TrmH family, group 1 [Lutiella nitroferrum
           2002]
          Length = 254

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 33/180 (18%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            P +   L  +R     +VL   + P NIG+  R+        +   +  +   S     
Sbjct: 3   KPEVPDFLKNIR-----VVLARPSHPGNIGSAARAMKTMGLSRLYLVEPKTFP-SPEADT 56

Query: 179 SASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------- 228
            ASGA++ + +  + N L +AL              +  ++ L   +   +         
Sbjct: 57  LASGAVDLLQHAVVVNTLAEALSD-----VTVACALTSRRRELTTPLSTPRQTTPELVAR 111

Query: 229 ------IALILGAEGKGLR-PKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQNH 279
                 +AL+ G E  GL   +  E    +  +   G  +  +LN++ A  V  Y   +H
Sbjct: 112 ARDGEQVALVFGNETFGLSIDEV-EQCNRLVTIP--GNPEYFSLNLAMAVQVMTYELFSH 168


>gi|241895544|ref|ZP_04782840.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313]
 gi|241871122|gb|EER74873.1| 23S rRNA methyltransferase [Weissella paramesenteroides ATCC 33313]
          Length = 171

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+A   +    +        +   + ++     +++      NL   +  + 
Sbjct: 14  PANTGNIARTATGTNTKLDLIEPLGFKLDDKHVKRAGLDYWDNVDITVHKNLPAFMATLK 73

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLR-PKTQETATSMAHLHMP-G 258
               +   +S  +KK   Q    +       + G E  GL  P  +E       +     
Sbjct: 74  DTD-ELFLISKFAKKSYHQADYTNTDHDYYFLFGKETTGLPEPFMKEHPDQALRIPQNDE 132

Query: 259 IIKALNVSNAAAVALYITQNH 279
            I++LN+SN AA+ +Y     
Sbjct: 133 HIRSLNLSNTAAIIIYEVLRQ 153


>gi|238783969|ref|ZP_04627985.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
 gi|238715077|gb|EEQ07073.1| Methyltransferase [Yersinia bercovieri ATCC 43970]
          Length = 167

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFASIKHHHDY 63

Query: 196 TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L      G Q+ G +               S    +         L+ G E +GL  
Sbjct: 64  QAFLDSEKLDGAQSAGATPARLFALTTKGTPAHSAVSYQANDY-----LLFGPETRGLPA 118

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +  +   A     + M    +++N+SNA +V +Y       
Sbjct: 119 RVLDVLPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 159


>gi|326692551|ref|ZP_08229556.1| rRNA methylase (SpoU class) [Leuconostoc argentinum KCTC 3773]
          Length = 170

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 7/150 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++ + V  P N G I R+         +        +   + ++     EH+  ++  +
Sbjct: 5   IVLFEPVM-PANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWEHVQLVKHDS 63

Query: 195 LTDALQKMHSWG-FQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATS 250
           L D L  +        +    + D  +P       D    + G E  GL     ++    
Sbjct: 64  LPDFLDTLRETDHLYLVSKFANYDYTQPDYSVTDGDHY-FLFGKETTGLPEVFMRQNPDK 122

Query: 251 MAHLHMPG-IIKALNVSNAAAVALYITQNH 279
              +      I++LN+SN  A+ LY     
Sbjct: 123 AIRIPQDDTHIRSLNLSNTVAIVLYEALRQ 152


>gi|296137027|ref|YP_003644269.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia
           K12]
 gi|295797149|gb|ADG31939.1| RNA methyltransferase, TrmH family, group 2 [Thiomonas intermedia
           K12]
          Length = 156

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R      C   +        +   L ++     E+      ++ 
Sbjct: 4   IVLVEPEIPPNTGNVIRLCANTGCTLHLVEPLGFSLDDKQLRRAGLDYHEYATLQTHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET---ATSMA 252
              +Q +     +    ++   + +           + GAE +GL    +E    A    
Sbjct: 64  DALMQTLQPRPERLFAFTTRGSRLIGSVRFEPGDYFVFGAETRGLSDAVREQFAPA-QRL 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SN+ AVA++     
Sbjct: 123 RLPMREGQRSLNLSNSVAVAVFEAWRQ 149


>gi|218886256|ref|YP_002435577.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757210|gb|ACL08109.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 266

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 24/162 (14%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIIT--TKRYS----PSESAVLAKSASGALEHI 187
           L +VL     P N+G + R+        I+    +R+S        AV   +  G     
Sbjct: 5   LTVVLVKTRFPENVGMVARACANMGARDIVLVDPERWSEADGDPAKAVPLATPKGQDILS 64

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--------------DKIALIL 233
               +  L +A+           G ++ +     + +                D++A++ 
Sbjct: 65  GVRVVGTLAEAVADCA----VVFGTTARTGGWRRELLSPERAAAEACPVLAGGDRVAVVF 120

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           G E +GL     E    +  +       +LN++ A  V LY 
Sbjct: 121 GPEDRGLTNDEIEHCHRLLTIPTAPEASSLNLAQAVLVVLYE 162


>gi|238789575|ref|ZP_04633359.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
 gi|238722328|gb|EEQ13984.1| Methyltransferase [Yersinia frederiksenii ATCC 33641]
          Length = 167

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHDY 63

Query: 196 TDALQKMHSWG-------------FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L   +  G               T G  + S    +         L+ G E +GL P
Sbjct: 64  QAFLDSENLDGAQSTGPQSARLFALTTKGTPAHSAVSYQANDY-----LLFGPETRGLPP 118

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +   A     + M    +++N+SNA +V +Y       
Sbjct: 119 FVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 159


>gi|187924494|ref|YP_001896136.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           phytofirmans PsJN]
 gi|187715688|gb|ACD16912.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           phytofirmans PsJN]
          Length = 353

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 101 VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPHVQSDPEAIAMASGADDVLASAHVVP 160

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L DAL           ++  +G       + +    EQ +  + IAL+ G E  GL  +
Sbjct: 161 TLADALSGVHWSIALTARLREYGPPQWTPRAAAGIAREQALHGE-IALVFGNERTGLSNE 219

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             E  +++AH+       +LN++ A  V  Y  +
Sbjct: 220 DVERCSALAHIPANPAYSSLNLAQAVQVLAYELR 253


>gi|291277503|ref|YP_003517275.1| putative RNA methylase [Helicobacter mustelae 12198]
 gi|290964697|emb|CBG40552.1| putative RNA methylase [Helicobacter mustelae 12198]
          Length = 154

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 2/145 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  VA      +        +   L ++       +      NL
Sbjct: 4   IVLIEPRIPQNTGNIGRLCVAAGARLHLIHPLGFSIDEKALKRAGMDYWRVLDLREWKNL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            +  +  H +  +   LS+ +KK   +     +  L  G E  G+     +T A  +  +
Sbjct: 64  QEFWES-HPFDHKHFLLSTKAKKIYYEAPFCRECFLYFGREDAGIDSGILQTYAKQVYKI 122

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I+++N++ +  V LY     
Sbjct: 123 PMQKNIRSINLATSVGVVLYEAIRQ 147


>gi|237748613|ref|ZP_04579093.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
 gi|229379975|gb|EEO30066.1| tRNA/rRNA methyltransferase [Oxalobacter formigenes OXCC13]
          Length = 257

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 23/163 (14%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHI-P 188
           S L  +L   + P N+GA  R+        ++  K       +       ASGA + +  
Sbjct: 12  STLRFILVGTSHPGNVGAAARAIKTMGFSRLVLVKPRFGDVLKQEEAIAFASGAQDILEN 71

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSK-----------KPLEQEIKND---KIALILG 234
            + +  L +AL+  H         +  ++           +     I        AL+ G
Sbjct: 72  ALIVETLEEALEDCH------FAAALSARLREFSPPIFTPRQFADNIFTGEHANCALVFG 125

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +E  GL  +  E   ++ ++       +LN++ A  +  Y  +
Sbjct: 126 SERYGLSNEDVEQCHALINIPANPDYSSLNLAQAIQILAYECR 168


>gi|187476751|ref|YP_784775.1| RNA methyltransferase [Bordetella avium 197N]
 gi|115421337|emb|CAJ47842.1| putative RNA methyltransferase [Bordetella avium 197N]
          Length = 156

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 4/149 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            +++V   +  P N G  +R          +        +   L ++     E  P    
Sbjct: 3   HVILVCPEI--PPNTGNAIRLCANTGAQLHLVRPLGFELDDTRLRRAGLDYHEWQPMKVH 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
            +L  AL    +   +   L++   +             + G E  GL P+         
Sbjct: 61  DDLPAALAATGAPPERIFALTTQGARSAAGMQYQRGDVFVFGRETAGLSPEHVALFAPGQ 120

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 121 RLRLPMRPGQRSLNLSNAVAVTVFEAWRQ 149


>gi|83719588|ref|YP_440980.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|167617773|ref|ZP_02386404.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis Bt4]
 gi|257140366|ref|ZP_05588628.1| RNA methyltransferase [Burkholderia thailandensis E264]
 gi|83653413|gb|ABC37476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis E264]
          Length = 156

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMHVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +T   ++                 + G+E +GL P   E         
Sbjct: 64  DAFVAAEAPDPARTFAFTTRGSGRFHDRAFEPGDWFVFGSETRGLTPALVERFAPEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|83647158|ref|YP_435593.1| rRNA methylase [Hahella chejuensis KCTC 2396]
 gi|83635201|gb|ABC31168.1| rRNA methylase [Hahella chejuensis KCTC 2396]
          Length = 257

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL + + P NIGA  R         ++  +     +    ++++ GAL+ +   ++ ++
Sbjct: 7   IVLVNTSHPGNIGATARVMKNMRLSRLVLVEPDRFPDDDATSRAS-GALDVLGSAQVVAS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDS-------------KKPLEQEIKNDK--IALILGAEGKG 239
           L +A+          +G S+                  +   +   +  +A++ G E +G
Sbjct: 66  LEEAIDGC----VLVVGTSARGRSIPWPVRNPRDLADDVYDRVATTRGDVAIVFGREERG 121

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L     +      H+       +LNV+ AA V  Y  
Sbjct: 122 LTNDELQRCHLHVHIPSNPDYSSLNVAMAAQVICYEL 158


>gi|315638690|ref|ZP_07893864.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481314|gb|EFU71944.1| TrmH family RNA methyltransferase [Campylobacter upsaliensis JV21]
          Length = 154

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 13/151 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R          I            + ++     + +  +   +L
Sbjct: 4   IVLVHPRIPQNTGSIGRMCFNAGFKLHIIKPCVFDLSEKAVKRAGLDYWDKLKPMIWESL 63

Query: 196 TDALQ---KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
            + L    +     F     ++ SKKP           L  G+E  GL  +      A  
Sbjct: 64  EEFLGSNLQCKERFFF---ATTKSKKPYFSVEFRAGDFLFFGSESFGLPNELMNLNEAHQ 120

Query: 251 MAHLHM--PGIIKALNVSNAAAVALYITQNH 279
              + M   G   +LN++ +  +  Y     
Sbjct: 121 -ITIPMKPYGR--SLNLATSVGIVSYEALRQ 148


>gi|260220117|emb|CBA27334.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 154

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        +   + ++     E+    R ++ 
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCRLHLVEPLGFSMDDKHMRRAGLDYHEYAELKRHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-----ETATS 250
              L        +   L++   +   +        L+ G+E KG+    +     E +  
Sbjct: 64  QHFLDAERPAPDRLFTLTTRGTRSPFEVAFQPGDWLVFGSETKGISDFVRMSFSPERS-- 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              L M    ++LN+SNA AV ++     
Sbjct: 122 -LRLPMRPDQRSLNLSNAVAVTVFEAWRQ 149


>gi|206578587|ref|YP_002236029.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
           342]
 gi|288933036|ref|YP_003437095.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola
           At-22]
 gi|290511829|ref|ZP_06551197.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
 gi|206567645|gb|ACI09421.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella pneumoniae
           342]
 gi|288887765|gb|ADC56083.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella variicola
           At-22]
 gi|289775619|gb|EFD83619.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. 1_1_55]
          Length = 157

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRHADY 63

Query: 196 TDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              L            T G  + S    +         L+ G E +GL     +      
Sbjct: 64  AAFLASAQPQRLFALTTKGTPAHSAVSYQDGDF-----LMFGPETRGLPASILDALPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|241690481|ref|XP_002411769.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215504608|gb|EEC14102.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 227

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 228 KIALILGAEGKGLRPKTQETA-T---SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              L++G E +GL  +  + A     S  H+     +++LN + AA++ L+  +   
Sbjct: 153 PSVLVVGGEAQGLSTQAHKLAVDCGGSRVHVPSDNEVESLNTAVAASIILFEMRRQI 209


>gi|22537728|ref|NP_688579.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|76786761|ref|YP_330206.1| RNA methyltransferase [Streptococcus agalactiae A909]
 gi|77409466|ref|ZP_00786159.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae COH1]
 gi|22534618|gb|AAN00452.1|AE014264_7 RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae 2603V/R]
 gi|76561818|gb|ABA44402.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
 gi|77171933|gb|EAO75109.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           agalactiae COH1]
          Length = 182

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +       L
Sbjct: 20  IVLFEPQIPANTGNIARTCAATNAPLHIIRPMGFPIDDKKMKRAGLDYWDKLDVSFYDGL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            + +          I   +D     E    +     + G E KGL     +E A     +
Sbjct: 80  EEFMLSCRGK-VHLISKFADKVYSDENYNDDQDHYFMFGREDKGLPETFMREHAEKALRI 138

Query: 255 HMP-GIIKALNVSNAAAVAL--YITQNH 279
            M    +++LNVSN   V +  Y     
Sbjct: 139 PMNDEHVRSLNVSNT--VCMIVYEALRQ 164


>gi|307717873|ref|YP_003873405.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
           6192]
 gi|306531598|gb|ADN01132.1| hypothetical protein STHERM_c01560 [Spirochaeta thermophila DSM
           6192]
          Length = 236

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 15/155 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L       N+G + R+      + ++  +      S    + A  A   +   R+   
Sbjct: 4   VILVEPEGAENVGMVARAMANMGHERLVLVRPACDHLSPPARRYAVHAESILEGARVCET 63

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK----------PLEQEIKNDK-IALILGAEGKGLRPK 243
           L +AL        +        +           P        + +AL+ G E  GL  +
Sbjct: 64  LAEALD---GVDLRVAVTRRHGQYRMPDLYLPEFPAFLAEFTGRDVALVFGRERTGLTSE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +    +  +   G   +LN++ A  V LY    
Sbjct: 121 EVQACDLILTIPSSGACPSLNLAQAVMVVLYELMR 155


>gi|186475041|ref|YP_001856511.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184191500|gb|ACC69465.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia phymatum
           STM815]
          Length = 156

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + + + ++     E+       N 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDSKMRRAGLDYHEYAQMHVHRNW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              ++       +    ++   +P            + GAE +GL     E         
Sbjct: 64  DALIEMEAPNLARMFAFTTRGSRPFHSHAFLPGDWFVFGAETRGLPDAVVERFPNEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|289626167|ref|ZP_06459121.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649074|ref|ZP_06480417.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330869591|gb|EGH04300.1| RNA methyltransferase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 257

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILESAKVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L DAL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEDALVGCR----LVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|54020406|ref|YP_115752.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|53987579|gb|AAV27780.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
 gi|144575296|gb|AAZ53517.2| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
 gi|312601121|gb|ADQ90376.1| TRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
          Length = 174

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 12/145 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHS 204
           N G I+RS         I        +   L + A+G L   I +    N  +  +K   
Sbjct: 14  NTGNIIRSCFVAGLKLHIIMPIAFDLDPKHLKRPAAGILLSEIEHEIHKNWQNFSEKYGQ 73

Query: 205 WG---FQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQ----ETATSMAHLHM 256
                    G    ++     EI+  K I  + G E  G+  +      E       + M
Sbjct: 74  KNLFFITRYGQKLYTEVDFYTEIETKKDIFFVFGRESTGIPIEILKKNKEKC---LRIPM 130

Query: 257 PGIIKALNVSNAAAVALYITQNHFA 281
               ++LN++N   +  Y       
Sbjct: 131 IAKARSLNLANTVVIIAYEFHRQLN 155


>gi|257439147|ref|ZP_05614902.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
 gi|257198398|gb|EEU96682.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
           A2-165]
          Length = 174

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L +VL     P N G + R+    +C   +        +   L  +      ++  
Sbjct: 9   EKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYLDI 68

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-A 248
                L D   +           ++ + +        D   L+ G E  GL         
Sbjct: 69  NYYDGLEDFFARNKG---PFYYFTTKAPQRYTDIQYPDGAYLVFGREDAGLPEALLAANQ 125

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M    ++LN+SN+ AV +Y     
Sbjct: 126 EHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 156


>gi|257056238|ref|YP_003134070.1| putative rRNA methylase SpoU family [Saccharomonospora viridis DSM
           43017]
 gi|256586110|gb|ACU97243.1| predicted rRNA methylase SpoU family [Saccharomonospora viridis DSM
           43017]
          Length = 158

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A    C+  +        E   L ++     +        +L  A Q + 
Sbjct: 12  PGNTGNAIRLAANTGCELHLIEPLGFSLEDRYLRRAGLDYHDLAHIQVHRDLDAAWQALD 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAHLHMPGIIK 261
                    ++ + +        +   L+ G E  GL  +    E  T    L M    +
Sbjct: 72  --PVHVYAFTTQAHRRHTDVDYAEGDVLLFGPESVGLPDEVLADERITDQVRLPMLPTSR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN++N AA+A+Y     
Sbjct: 130 SLNLTNTAAIAVYEAWRQ 147


>gi|51594425|ref|YP_068616.1| methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|186893412|ref|YP_001870524.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|51587707|emb|CAH19307.1| putative methyltransferase [Yersinia pseudotuberculosis IP 32953]
 gi|186696438|gb|ACC87067.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
           pseudotuberculosis PB1/+]
          Length = 162

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 15/156 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDY 63

Query: 196 TDAL--------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L        Q    +   T G  + S    +         L+ G E +GL     + 
Sbjct: 64  QAFLDSEKLDSTQLARLFALTTKGTPAHSAVSYQANDY-----LLFGPETRGLPAYILDA 118

Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             A     + M    +++N+SNA +V +Y       
Sbjct: 119 LPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 154


>gi|221505261|gb|EEE30915.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 562

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 34/161 (21%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV------- 141
           H      V  + + KI G  +   G   E      P   +  + +LL+ L          
Sbjct: 271 HGVETHFVTDRILRKIAGLHSYDGGCVAEMR--HPPPAASFGDMKLLLCLGRPPNSFCET 328

Query: 142 -----------NDPHN--------IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                       D  N        +G ILRSA A    G+    +     + +  +++ G
Sbjct: 329 DTACSSFKGLEEDRDNFERLMLGILGTILRSAAALQWQGVWLLPQCPDVFNPLAIRASQG 388

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQT-----IGLSSDSKK 218
           AL  +PY R  +  D ++               GL   S +
Sbjct: 389 ALFWLPYRR-GSWDDFVKFTSEQDLLICIPHEAGLDVHSSE 428


>gi|221483983|gb|EEE22287.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 554

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 34/161 (21%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHV------- 141
           H      V  + + KI G  +   G   E      P   +  + +LL+ L          
Sbjct: 271 HGVETHFVTDRILRKIAGLHSYDGGCVAEMR--HPPPAASFGDMKLLLCLGRPPNSFCET 328

Query: 142 -----------NDPHN--------IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
                       D  N        +G ILRSA A    G+    +     + +  +++ G
Sbjct: 329 DTACSSFKGLEEDRDNFERLMLGILGTILRSAAALQWQGVWLLPQCPDVFNPLAIRASQG 388

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQT-----IGLSSDSKK 218
           AL  +PY R  +  D ++               GL   S +
Sbjct: 389 ALFWLPYRR-GSWDDFVKFTSEQDLLICIPHEAGLDVHSSE 428


>gi|45439935|ref|NP_991474.1| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809463|ref|YP_653379.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|108813940|ref|YP_649707.1| methyltransferase [Yersinia pestis Nepal516]
 gi|145601075|ref|YP_001165151.1| methyltransferase [Yersinia pestis Pestoides F]
 gi|150260867|ref|ZP_01917595.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
 gi|153949233|ref|YP_001399082.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|162420361|ref|YP_001604714.1| RNA methyltransferase [Yersinia pestis Angola]
 gi|165926204|ref|ZP_02222036.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936183|ref|ZP_02224752.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011519|ref|ZP_02232417.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213678|ref|ZP_02239713.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398819|ref|ZP_02304343.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419141|ref|ZP_02310894.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426653|ref|ZP_02318406.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468388|ref|ZP_02333092.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis FV-1]
 gi|170026342|ref|YP_001722847.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|218927290|ref|YP_002345165.1| putative methyltransferase [Yersinia pestis CO92]
 gi|229836184|ref|ZP_04456352.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
 gi|229839920|ref|ZP_04460079.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842002|ref|ZP_04462157.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229904469|ref|ZP_04519580.1| predicted rRNA methylase [Yersinia pestis Nepal516]
 gi|270488468|ref|ZP_06205542.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
           D27]
 gi|294502174|ref|YP_003566236.1| putative methyltransferase [Yersinia pestis Z176003]
 gi|123777848|sp|Q74Y93|TRML_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|45434790|gb|AAS60351.1| putative methyltransferase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108777588|gb|ABG20107.1| methyltransferase [Yersinia pestis Nepal516]
 gi|108781376|gb|ABG15434.1| putative methyltransferase [Yersinia pestis Antiqua]
 gi|115345901|emb|CAL18760.1| putative methyltransferase [Yersinia pestis CO92]
 gi|145212771|gb|ABP42178.1| methyltransferase [Yersinia pestis Pestoides F]
 gi|149290275|gb|EDM40352.1| predicted rRNA methylase [Yersinia pestis CA88-4125]
 gi|152960728|gb|ABS48189.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353176|gb|ABX87124.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis
           Angola]
 gi|165915797|gb|EDR34405.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922064|gb|EDR39241.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989665|gb|EDR41966.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205080|gb|EDR49560.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166963135|gb|EDR59156.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051323|gb|EDR62731.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054342|gb|EDR64159.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752876|gb|ACA70394.1| RNA methyltransferase, TrmH family, group 2 [Yersinia
           pseudotuberculosis YPIII]
 gi|229678587|gb|EEO74692.1| predicted rRNA methylase [Yersinia pestis Nepal516]
 gi|229690312|gb|EEO82366.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696286|gb|EEO86333.1| predicted rRNA methylase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706632|gb|EEO92638.1| predicted rRNA methylase [Yersinia pestis Pestoides A]
 gi|262360253|gb|ACY56974.1| putative methyltransferase [Yersinia pestis D106004]
 gi|262364200|gb|ACY60757.1| putative methyltransferase [Yersinia pestis D182038]
 gi|270336972|gb|EFA47749.1| RNA methyltransferase, TrmH family, group 2 [Yersinia pestis KIM
           D27]
 gi|294352633|gb|ADE62974.1| putative methyltransferase [Yersinia pestis Z176003]
 gi|320013423|gb|ADV96994.1| putative rRNA methylase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 162

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 15/156 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDY 63

Query: 196 TDAL--QKM------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L  +K+        +   T G  + S    +         L+ G E +GL     + 
Sbjct: 64  QAFLDSEKLDSTQPARLFALTTKGTPAHSAVSYQANDY-----LLFGPETRGLPAYILDA 118

Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             A     + M    +++N+SNA +V +Y       
Sbjct: 119 LPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 154


>gi|297584847|ref|YP_003700627.1| TrmH family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297143304|gb|ADI00062.1| RNA methyltransferase, TrmH family, group 2 [Bacillus
           selenitireducens MLS10]
          Length = 163

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +       ++  +L ++       +      + 
Sbjct: 5   VVLYEPEIPANTGNIARTCAGTHSHLHLIHPLGFSTDDRMLKRAGCDYWPSVKVEHHDSF 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLR-PKTQETATSM 251
                +     F  I   +  +K +     +D       + G E  GL    T       
Sbjct: 65  DALYSRYPEGAFYFI--ETIGEKNVYDFDYSDPDQDYFFVFGKETTGLPGELTARFEEHC 122

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +    ++++LN+SN AA+ +Y      A
Sbjct: 123 FRIPQTDLVRSLNLSNTAAIVVYEALRQQA 152


>gi|71738099|ref|YP_273564.1| RNA methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558652|gb|AAZ37863.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320322935|gb|EFW79025.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329942|gb|EFW85930.1| RNA methyltransferase [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 257

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILESAKVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L DAL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEDALVGCR----LVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|161523632|ref|YP_001578644.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189351599|ref|YP_001947227.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221211142|ref|ZP_03584121.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD1]
 gi|160341061|gb|ABX14147.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans ATCC 17616]
 gi|189335621|dbj|BAG44691.1| TrmH family RNA methyltransferase [Burkholderia multivorans ATCC
           17616]
 gi|221168503|gb|EEE00971.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD1]
          Length = 156

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              +        +    ++                 + G+E +GL  +  E   A     
Sbjct: 64  DAFVAAESPDPARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAELLERFPAEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    +++N+SN  AV ++     
Sbjct: 124 LPMRPGNRSMNLSNTVAVVVFEAWRQ 149


>gi|94501916|ref|ZP_01308426.1| rRNA methylase [Oceanobacter sp. RED65]
 gi|94425969|gb|EAT10967.1| rRNA methylase [Oceanobacter sp. RED65]
          Length = 253

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 14/158 (8%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL   +   NIG+  R+      + ++  +  S   + +   + + A      +  +
Sbjct: 5   LRIVLIGTSHNGNIGSTARAMKTMGINDLVLVEPKSFDPNNLCDDAIAMASGATDLLASA 64

Query: 194 NLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKG 239
            +    ++        +G S+               + K +E   +  K+AL+LG E  G
Sbjct: 65  KVVSTFEQAIEDCAVVMGASARSRHLPWPLMHPRKAAAKSMEVLPRGQKVALVLGRERTG 124

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L            H+       +LNV+ AA V  Y  +
Sbjct: 125 LTNDELAMCQVHIHIPANPDYASLNVAAAAQVLCYEVR 162


>gi|270285622|ref|ZP_06195016.1| spoU rRNA methylase family protein [Chlamydia muridarum Nigg]
          Length = 104

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGF---QTIGLSSDSKKPL-EQEIKNDKIALILGAEGKG 239
            + +    + +L +AL      G    +   L++       E+E+  D    I GAE +G
Sbjct: 4   WDRLSLSVVDSLEEAL-----RGIPREKIFCLTTKGSSYYGERELPLDGT-YIFGAESRG 57

Query: 240 LRPKTQET-ATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L     +  ++   ++ M    ++LN++ +  + +Y     
Sbjct: 58  LPQTVLDAYSSQCLYIPMIEGTRSLNLATSVGIVMYEVARQ 98


>gi|237750840|ref|ZP_04581320.1| rRNA methylase [Helicobacter bilis ATCC 43879]
 gi|229373285|gb|EEO23676.1| rRNA methylase [Helicobacter bilis ATCC 43879]
          Length = 160

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  VA +    +       ++   L ++     +H+     +NL
Sbjct: 7   IVLVEPQIPQNTGNIGRLCVAANAMLHLIHPLGFSTKEKDLKRAGLDYWQHLKVYEWANL 66

Query: 196 TDALQKMHSWGFQTIGL----SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TS 250
               Q      +         S+ +KK   +        L  G E  GL     E+    
Sbjct: 67  ESFWQT-----YTPDATHFFFSTKAKKLYFEADLKHGAFLYFGREDAGLPLHILESFKNQ 121

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +  + M   ++++N++ +A   LY     
Sbjct: 122 IYKIPMQKGVRSINLATSAGAVLYEAVRQ 150


>gi|255085818|ref|XP_002505340.1| predicted protein [Micromonas sp. RCC299]
 gi|226520609|gb|ACO66598.1| predicted protein [Micromonas sp. RCC299]
          Length = 525

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 8/137 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G + RSA       I        +     A   + A + +P  +     D  +     
Sbjct: 379 NVGTLWRSAWQLGAGFIF----TVATRFKYEASDTTQAYKQLPLFKYDEWGDFAKNSPHG 434

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM-PGIIKALN 264
                 +      PL+  +   +   +LG+E  GL     E       L    G   + N
Sbjct: 435 AVWV-AIEM-GGVPLQDFVHPPRAVYVLGSEDNGLNRPIVEACQCHVALPKWIGRSASYN 492

Query: 265 VSNAAAVALYIT-QNHF 280
           V+ A  + +Y   Q   
Sbjct: 493 VAMAGTLVMYDRMQKQL 509


>gi|330817527|ref|YP_004361232.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
           BSR3]
 gi|327369920|gb|AEA61276.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia gladioli
           BSR3]
          Length = 258

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 71/178 (39%), Gaps = 22/178 (12%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--S 173
           ++ +P +     A R ++ ++V    + P N+GA  R+        ++            
Sbjct: 1   MDISPPIPAPPQAFRAARFVLV--EPSHPGNVGAAARALKTMGFSQLVLVAPRVAEVLAD 58

Query: 174 AVLAKSASGALEHIPYIR-ISNLTDALQ----------KMHSWGFQTIG---LSSDSKKP 219
                 ASGA + +   R ++ L +AL           +   +G   +     + ++++ 
Sbjct: 59  PEAIAMASGADDVLAATRIVATLDEALAGVSWSAALTARSREYGPPRLAPRAAAGEARRQ 118

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L+      +IA + G E  GL  +  E  +++AH+       +LN+S A  V  Y  +
Sbjct: 119 LD----GGEIAFVFGNERVGLSNEHVERCSAIAHIPANPDYSSLNLSQAIQVLAYELR 172


>gi|313114962|ref|ZP_07800457.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622722|gb|EFQ06182.1| RNA methyltransferase, TrmH family, group 2 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 168

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 4/151 (2%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L +VL     P N G + R+    +C   +        +   L  +      ++  
Sbjct: 3   EKPTLNIVLVEPRIPQNTGNVARTCACTACRLHLVGPMGFAIDDKKLKHAGLDYWHYLDI 62

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-A 248
               +L +      + G      ++ + +        D   L+ G E  GL         
Sbjct: 63  SYYDSLDEFFA--KNSG-PYYYFTTKAPQRYTDVSYPDGAYLVFGREDAGLPEALLAANQ 119

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M    ++LN+SN+ AV +Y     
Sbjct: 120 EHCIRMPMRDTCRSLNLSNSVAVGVYEVLRQ 150


>gi|296110437|ref|YP_003620818.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295831968|gb|ADG39849.1| rRNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 170

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    +    +        +   + ++     EH+  ++  +L D L  + 
Sbjct: 13  PANTGNIARTTAGTNAVLHLIEPLGFDLDDKHVKRAGLDYWEHVQLVKHDSLPDFLDTLG 72

Query: 204 SWG-FQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG- 258
                  +    + D  +P   E + D    + G E  GL     ++       +     
Sbjct: 73  EQDHLYLVSKFANMDYTQPNYGETEGDHY-FLFGKETTGLPEVFMRQNPEKAIRIPQNDT 131

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            I++LN+SN  A+ LY      A
Sbjct: 132 HIRSLNLSNTVAIVLYEALRQQA 154


>gi|157164727|ref|YP_001467080.1| RNA methyltransferase [Campylobacter concisus 13826]
 gi|112800448|gb|EAT97792.1| hypothetical tRNA/rRNA methyltransferase Slr0992 [Campylobacter
           concisus 13826]
          Length = 159

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 11/150 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N GAI R  V  +    I            + ++     + +      +L
Sbjct: 4   IVLVHPQIPQNTGAIGRMCVNANLKLHIVKPTVFDLSEKAVRRAGLDYWKILDPKIWESL 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM- 251
            + L+         F     +  ++   + + +     +  G E  GL  +  +      
Sbjct: 64  DEFLEANLSHKERFF--FATTKTNRLYYDAKFEPGDF-IFFGGESTGLPREFMDINFKNA 120

Query: 252 AHLHMPGIIK--ALNVSNAAAVALYITQNH 279
             + M    +  +LN++ +A +  Y     
Sbjct: 121 ITIPM--GKEGRSLNLAMSAGIIAYEAIRQ 148


>gi|257125465|ref|YP_003163579.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
 gi|257049404|gb|ACV38588.1| tRNA/rRNA methyltransferase (SpoU) [Leptotrichia buccalis C-1013-b]
          Length = 157

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 8/151 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +     N G I R+ V  +    +        +   + ++     + +      N 
Sbjct: 7   IVLLNPEIHVNTGNIGRTCVLTNTKLHLIKPLGFELDDKKIRRAGLDYWKDVKLFVWENW 66

Query: 196 TDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAH 253
               ++    G  +    ++ +K+       ND   ++ G E +G+  +       S   
Sbjct: 67  EHFWRENIENGNAKIYFATTKTKQRYTDVKFNDNDYIMFGPESRGIPEEILNRYKESNIT 126

Query: 254 LHMP--GIIKALNVSNAAAVALYI--TQNHF 280
           + M   G   +LN+SNA A+ L+    QN+F
Sbjct: 127 IPMLPLGR--SLNLSNAVAIVLFEALRQNNF 155


>gi|312796656|ref|YP_004029578.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
 gi|312168431|emb|CBW75434.1| RRNA methylase, SpoU family [Burkholderia rhizoxinica HKI 454]
          Length = 318

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 14/154 (9%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++       +          ASGA + +    +  
Sbjct: 76  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRLEAVRTHPDAQAMASGADDVLAAAHVVP 135

Query: 194 NLTDALQ----------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L DAL           +   WG  T+   + + +        D IAL+ G E  GL   
Sbjct: 136 TLADALAGVHWSVALTAREREWGPPTLAPRALALRARGLAAAGD-IALVFGNERTGLSNA 194

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             E    +AH+       +LN++ A  V  Y  +
Sbjct: 195 DVERCNVLAHIPANPAYSSLNLAQAVQVLAYELR 228


>gi|315445821|ref|YP_004078700.1| rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
 gi|315264124|gb|ADU00866.1| predicted rRNA methylase SpoU family [Mycobacterium sp. Spyr1]
          Length = 154

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R      C   +            L ++     +       ++L  A   +   
Sbjct: 14  NTGNAIRMVAGTGCALHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHADLGAAWSALMPA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +              L+ G E  GL   T      T    + M    ++L
Sbjct: 74  --RVFAFTAHAATSFAGVGYEPGDVLMFGPEPTGLDELTLADPHITEQVRIPMLSGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAVA+Y     
Sbjct: 132 NLSNAAAVAVYEAWRQ 147


>gi|254432233|ref|ZP_05045936.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
           7001]
 gi|197626686|gb|EDY39245.1| RNA methyltransferase, TrmH family, group 1 [Cyanobium sp. PCC
           7001]
          Length = 255

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 18/166 (10%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L++VL       N+G++ R    F+   +               + A      +   
Sbjct: 2   KPPLVVVLVEPAGALNVGSVARLCANFAVQQLRLVSPRCDPFGEEARRMAVHGASVLDQA 61

Query: 191 R-ISNLTDALQKMHSWGFQTIGLS---------SDSKKPLEQEIKNDK----IALILGAE 236
               +L  A+   H    + +  S             +     +        +AL+ G E
Sbjct: 62  ALHPDLASAVADCH----RVVATSGRRDGEPLPLQGPETSLAWLSGGPCDQTVALVFGRE 117

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +GL       A  +  L       +LN+S+A A+AL+       +
Sbjct: 118 DRGLSNGELLQAGHLLTLPTAAAYTSLNLSHAVALALHAWHGQVQR 163


>gi|299143699|ref|ZP_07036779.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518184|gb|EFI41923.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 159

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 17/148 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--- 200
           P N GAI R+         +        +S+ L ++       +      +  D L+   
Sbjct: 12  PFNTGAIARTCGLTKTRLHLIEPLGFSVDSSHLKRAGLDYWHLVDINYYKSYDDFLEKNE 71

Query: 201 -KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSMAHLH 255
            +M   G      ++ +++        D   ++ G E +G+         E       + 
Sbjct: 72  DEMKD-GASLYFATTKAEQKYTDVKFKDGDYIMFGPETRGIPESILFNDIEHC---IKIP 127

Query: 256 M---PGIIKALNVSNAAAVALYITQNHF 280
           M    G   +LN+SN+A + L+      
Sbjct: 128 MLKDYGR--SLNLSNSANIILFEALRQL 153


>gi|227495210|ref|ZP_03925526.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM
           15436]
 gi|226831662|gb|EEH64045.1| SpoU family rRNA methyltransferase [Actinomyces coleocanis DSM
           15436]
          Length = 153

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 5/139 (3%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N GA +R +        +        E + L ++     +        +L DA   +  
Sbjct: 13  GNSGAAIRLSACTGSMLHLVEPFGFDMEDSKLRRAGLDYHDLAHVQTHPDLEDAFAGIEG 72

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKA 262
                   +  +          D  AL+ G E  GL     +       A + M    ++
Sbjct: 73  N---IYAFTGHATTFYGDISYQDGDALLFGKESTGLPQWVLDHPQVKLAARIPMLPERRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN++N+A++ LY       
Sbjct: 130 LNLTNSASIVLYEAWRQLG 148


>gi|156936222|ref|YP_001440138.1| putative tRNA/rRNA methyltransferase YibK [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156534476|gb|ABU79302.1| hypothetical protein ESA_04121 [Cronobacter sakazakii ATCC BAA-894]
          Length = 157

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E    +R ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRHADY 63

Query: 196 TDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              L+           T G  + S    +         L+ G E +GL     +      
Sbjct: 64  AAFLEAEKPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDVLPQEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|241668936|ref|ZP_04756514.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877468|ref|ZP_05250178.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843489|gb|EET21903.1| tRNA/rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 155

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        E   L ++     E        N  +  QK  
Sbjct: 12  PPNTGNIIRLCANVGAKLHLIEPLGFKLEDKQLRRAGLDYHEFADLKIYKNFDEFYQKNK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMPGIIKA 262
                    ++ +K+   Q   N    L+ G E +GL     +        + M    ++
Sbjct: 72  QNKIW--ACTTKAKQYYHQVNFNYDDILLFGPETRGLPIDVLKLLEKTQLKIPMHKNSRS 129

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN+SN+ AV LY   N+  
Sbjct: 130 LNLSNSVAVILYGALNNIG 148


>gi|289672600|ref|ZP_06493490.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 101

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLP--HPFPVKTVPPQTIDKIVGK 107
           +YGVH V A L +  +++  +   +     R+     L   +   +     + +D  V  
Sbjct: 7   IYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWV-- 64

Query: 108 EAVHQGLALETAP-------LLSPTLDAVRNSQLLMV 137
           E VHQG+  + +P       +L   LD    S LL V
Sbjct: 65  EGVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLFV 101


>gi|114704756|ref|ZP_01437664.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114539541|gb|EAU42661.1| RNA methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 150

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 44/136 (32%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N GA++R+A        I            L ++    L      +  +          
Sbjct: 14  GNTGAVMRTAACLDLRIEIIEPTGFELSDRSLKRAGMDYLSLANLTKHLDFEAFEAWRKR 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            G + I L++ +   +      D   ++ G E  G+  +    A +   + M    +++N
Sbjct: 74  AGRRLILLTTKADTVVWDFEFRDDDIVMFGRETAGVPVEVHAAADARLTIPMQTGARSMN 133

Query: 265 VSNAAAVALYITQNHF 280
           +S + A+         
Sbjct: 134 LSASVALVCGEAVRQL 149


>gi|148377353|ref|YP_001256229.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
 gi|148291399|emb|CAL58783.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae PG2]
          Length = 177

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 10/145 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKM 202
           P N   I+R+  A      I        +   L++ A+G L   I +    + +D   K 
Sbjct: 12  PPNTANIIRTCFAIGAKLHIIKPISFSLDPKYLSRPAAGRLLSDIEHEVHDSYSDFYNKY 71

Query: 203 HSWGFQTIGLSSDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQE-TATSMAHLH 255
                    ++    K             ND+I L+ G E  G+  +  +    +   + 
Sbjct: 72  KDKN--IYYITRYGLKTYSDVDFKKEYENNDEIWLMFGKESTGIDKQVLKDNIDNCLRIP 129

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M   ++++N++N  A+  +      
Sbjct: 130 MISKMRSINLANCVAIVGFEVMRQI 154


>gi|118474338|ref|YP_891998.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413564|gb|ABK81984.1| tRNA/rRNA methyltransferase [Campylobacter fetus subsp. fetus
           82-40]
          Length = 162

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 13/151 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N G+I R  V   C   +        +   L ++     + +  +   +L
Sbjct: 4   IVLVRPEIHTNTGSIGRMCVNSGCRLHLIKPLGFMLDDKHLKRAGLDYWDKLDLVIWESL 63

Query: 196 TDALQ---KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT----QETA 248
            D L    K     F     +  ++     + +     L  GAEG GL        +E  
Sbjct: 64  DDFLTQNIKFKDRFF--FATTKTNRLYFNTKFQKGDF-LFFGAEGSGLPLDLMKIKKENC 120

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M G  ++LN++ +  +  Y     
Sbjct: 121 ---ITIPMSGDGRSLNLATSVGIITYEAIRQ 148


>gi|300857062|ref|YP_003782046.1| putative rRNA methylase [Clostridium ljungdahlii DSM 13528]
 gi|300437177|gb|ADK16944.1| predicted rRNA methylase, SpoU class [Clostridium ljungdahlii DSM
           13528]
          Length = 155

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +        +   L ++     +++      + 
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTGSKLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTLYDSY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MAHL 254
            +  +K    G      ++  K    +    D   ++ G E  GL  + +++A      +
Sbjct: 65  EELREKYK--GGTFYFSTTHGKNFYHEAKFKDGDFIVFGRETCGLPDEIRDSAPEKCIRV 122

Query: 255 HM-PGIIKALNVSNAAAVALYITQNHF 280
            M     ++LN+SN  A+  Y      
Sbjct: 123 PMIKTSTRSLNLSNTVAIVAYEALRQI 149


>gi|294638286|ref|ZP_06716539.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
           ATCC 23685]
 gi|291088539|gb|EFE21100.1| RNA methyltransferase, TrmH family, group 2 [Edwardsiella tarda
           ATCC 23685]
          Length = 157

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFTWDDKRLRRAGLDYHEFADIRRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L        +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  ATFLASECPQRLFALTTKGTPAHSAVSYQAGDY-----LLFGPETRGLPATILDNLPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQLG 149


>gi|157149223|ref|YP_001456542.1| putative tRNA/rRNA methyltransferase YibK [Citrobacter koseri ATCC
           BAA-895]
 gi|157086428|gb|ABV16106.1| hypothetical protein CKO_05063 [Citrobacter koseri ATCC BAA-895]
          Length = 157

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              +        +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPATILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|69249395|ref|ZP_00604960.1| hypothetical protein EfaeDRAFT_0097 [Enterococcus faecium DO]
 gi|68194182|gb|EAN08712.1| hypothetical protein EfaeDRAFT_0097 [Enterococcus faecium DO]
          Length = 34

 Score = 60.4 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   ++ M G  ++LNV  AA + LY    HF+
Sbjct: 1   MSLTDQNVYIPMKGNAESLNVGVAAGIVLY----HFS 33


>gi|24374596|ref|NP_718639.1| RNA methyltransferase [Shewanella oneidensis MR-1]
 gi|24349210|gb|AAN56083.1|AE015744_4 RNA methyltransferase, TrmH family, putative [Shewanella oneidensis
           MR-1]
          Length = 203

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 16/144 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           P N+G I+R++  +  D +  T +   Y+             A E IP   +++L DA+ 
Sbjct: 32  PTNVGGIMRASGCYGVDAVFYTGKRYEYAARGPQQYNADTQSAAERIPLTGVTSLLDAIP 91

Query: 201 KMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPG 258
                G Q + +       PL + +  ++   + G E  G +  +  + A ++ ++   G
Sbjct: 92  ----AGTQLVCVDLVLGATPLPEFVHPERAFYVFGPE-DGTIGQEIIDRADAVVYVPTVG 146

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            +   N++ +  V LY   +  AK
Sbjct: 147 CM---NLAASVNVLLY---DRLAK 164


>gi|322433937|ref|YP_004216149.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
 gi|321161664|gb|ADW67369.1| tRNA/rRNA methyltransferase (SpoU) [Acidobacterium sp. MP5ACTX9]
          Length = 262

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 26/156 (16%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +P NIGA+ R+        +     +        AKSA  A   +     +      + +
Sbjct: 26  NPSNIGAVARAMHDLGFAHLRIVNDFPVPF--AAAKSAVDASSVL--AAATEPASVAEAV 81

Query: 203 HSWGFQTIGLSS--------------DSKKPLEQEIKNDK---IALILGAEGKGLRPKTQ 245
                  +G ++               +   + Q ++ D    IAL+ G+E  GL  +  
Sbjct: 82  ADCTL-VLGTTAVGERALQHPLQTLNQAAATVRQTLRTDPAAKIALLFGSEKTGLSNEEL 140

Query: 246 ETATSMAHLHMPG-IIK---ALNVSNAAAVALYITQ 277
               ++  + M         ++N+  AAAV LY   
Sbjct: 141 SHCHALLTIPMNTLTADHHLSMNLGQAAAVCLYQLA 176


>gi|167579696|ref|ZP_02372570.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis TXDOH]
          Length = 156

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMHVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +T   ++                 + G+E +GL P   E         
Sbjct: 64  DAFVAAEAPDPARTFAFTTRGSGRFHDRAFQPGDWFVFGSETRGLAPALVERFAPEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|90021058|ref|YP_526885.1| RNA methyltransferase [Saccharophagus degradans 2-40]
 gi|89950658|gb|ABD80673.1| RNA methyltransferase TrmH, group 1 [Saccharophagus degradans 2-40]
          Length = 267

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 22/167 (13%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +++ +V+ +   P NIG   R+        +             + ++AS        + 
Sbjct: 8   NRIRIVMVNTTHPGNIGGAARAMKNMGLGKLYLVDPKQYPAEKAVWRAASATDVLDDAVV 67

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK---PL----------EQEIKNDKIALILGAEGK 238
           + +L +A+          +G S+  ++   PL            E    ++A++ G E +
Sbjct: 68  VGSLDEAIADCT----LVVGTSARERRIPWPLLTPRECGDKAWAEAGKGEVAIVFGREDR 123

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ-NHFAK 282
           GL  +  +      H+       +LN   AAA+    Y  +  H A+
Sbjct: 124 GLTNEELQKCHYHVHIPSNPDYSSLN--IAAAIQVLCYEIRMTHLAE 168


>gi|300023629|ref|YP_003756240.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525450|gb|ADJ23919.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 430

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 25/173 (14%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            P         ++++   + D  NIG + R+   F  D +          +     +ASG
Sbjct: 163 EPVAGEGETPSVILMEPQLAD--NIGMVARACANFGLDDLRLVNPRDGWPNEKARIAASG 220

Query: 183 ALEHIPYIR-ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------- 227
           A   I   R    L D++  ++         ++  +   +  +  +              
Sbjct: 221 ANYVIDDARPFEKLEDSIADLN----WIAATTARQRDMRKPVLTPEQAIAEARARIARGE 276

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +  ++ G E  GL       A ++  + +     +LN++ A  V L  Y    
Sbjct: 277 RCGILFGRERNGLETGEVANADALIMIPVNSRFASLNLAQA--VLLLGYEWMR 327


>gi|256824436|ref|YP_003148396.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
 gi|256687829|gb|ACV05631.1| rRNA methylase [Kytococcus sedentarius DSM 20547]
          Length = 235

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 13/143 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           R   L + +++     NIG+++RSA AF+        R          + A     +   
Sbjct: 76  RRHGLHVAVENWGHDFNIGSVIRSANAFNVAAFHIVGRR-----RWNRRGAMVTDRYQHE 130

Query: 190 IRISNLTDAL-------QKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLR 241
              ++  +         ++    G   IG+        LE  +   +  ++ G EG GL 
Sbjct: 131 FHHADAGELAAWAAAAPRQDGGTGLPLIGIDNLPGSVALEGYMLPAECVMVFGQEGPGLT 190

Query: 242 PKTQETATSMAHLHMPGIIKALN 264
           P+      ++ H+   G  +++N
Sbjct: 191 PEVVARCEAVLHIEQFGSTRSIN 213


>gi|162449973|ref|YP_001612340.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56']
 gi|161160555|emb|CAN91860.1| rRNA methylase (SpoU class) [Sorangium cellulosum 'So ce 56']
          Length = 152

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R A A      +  +     +   + ++       +   +  ++        
Sbjct: 8   PQNTGNIARLAAATQSPLHLLGRLGFRIDERSVRRAGLDYWHLVTLEQQLDIAHFRHHHP 67

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHLHMPGIIKA 262
           +   +    S+ + +           AL+ G E  GL P+        +  +   G +++
Sbjct: 68  NARLRLF--SAVAPRSYLDADFRPGDALVFGKESVGLDPELLARMPDDVFGIPTLGPVRS 125

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN++NA ++ LY       
Sbjct: 126 LNLANAVSIVLYEALRQVG 144


>gi|56415585|ref|YP_152660.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364512|ref|YP_002144149.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129842|gb|AAV79348.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095989|emb|CAR61576.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 157

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +        +   T G ++ S    +         L+ G E +GL     +      
Sbjct: 64  AAFVAAENPQRLFALTTKGTAAHSAVSYQDGDY-----LMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|16126759|ref|NP_421323.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
 gi|13424077|gb|AAK24491.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
          Length = 251

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 19/155 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           M+L+      NIG++ R    F    +   +            SASGA   +   ++   
Sbjct: 1   MILNEPQLAENIGSVARVMANFGLSDLRLVRPRDGWPQERAWASASGAHWPLDDAKVFDT 60

Query: 195 LTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDK-IALILGAEGKGL 240
           L  A+  +          ++             +S   L +E+   + + L+ G E  GL
Sbjct: 61  LEAAIADLK----LVYATTARPRETRLPIYTPRESAGHLAEEVAQGRAVGLLFGGERAGL 116

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                    ++  + +    ++LN++ A ++  Y 
Sbjct: 117 ETDDIALCQAIVSIPIDERFRSLNLAQAVSINAYE 151


>gi|19551878|ref|NP_599880.1| SpoU class rRNA methylase [Corynebacterium glutamicum ATCC 13032]
 gi|62389537|ref|YP_224939.1| tRNA/rRNA methyltransferase protein [Corynebacterium glutamicum
           ATCC 13032]
 gi|145294815|ref|YP_001137636.1| hypothetical protein cgR_0762 [Corynebacterium glutamicum R]
 gi|21323412|dbj|BAB98040.1| Predicted rRNA methylase (SpoU class) [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324871|emb|CAF19353.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
 gi|140844735|dbj|BAF53734.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 157

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 5/155 (3%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L ++ D+   P N G  +R         +   +      +    + A   L++  
Sbjct: 1   MPEHPLHVIFDNPVIPPNTGNAIRMCAGTGAH-LHLVEPLGFELTEKHLRRAG--LDYHD 57

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              ++      + M +   +    ++ +             AL+ G E  GL  +  E +
Sbjct: 58  LADVTVHATFDEAMAAVPGRVFAFTTTANTRFTDIAFEPGDALLFGTEPTGLPQEHVEHS 117

Query: 249 --TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             TS   + M    +++N+SN+AAVA Y       
Sbjct: 118 RITSELRIPMLPGRRSMNLSNSAAVATYEAWRQLG 152


>gi|329946838|ref|ZP_08294250.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526649|gb|EGF53662.1| RNA methyltransferase, TrmH family, group 2 [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 152

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 6/137 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N GA +R +       +         + A L ++     +    +  +   + L+  H
Sbjct: 12  PGNTGAAIRLSANTG-SMLHLVDPLFDMDDAKLRRAGLDYHDLANTLVHATWQECLE--H 68

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
             G +    +S +++   Q    D   L+ G E  GL  +  +    ++   + M    +
Sbjct: 69  VPG-RIFAFTSHTERLYTQVDWRDDDTLLFGPEPTGLPQEILDHPRVSAHLRIPMVEGNR 127

Query: 262 ALNVSNAAAVALYITQN 278
           +LN++N+AA+ LY    
Sbjct: 128 SLNLANSAAIGLYEAWR 144


>gi|295675360|ref|YP_003603884.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1002]
 gi|295435203|gb|ADG14373.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp.
           CCGE1002]
          Length = 156

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P +   + ++     E+      ++ 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVHTDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
              + K      +    ++                 + GAE +GL     E  T      
Sbjct: 64  DAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPDTVLERFTNEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|296875981|ref|ZP_06900040.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
 gi|296433056|gb|EFH18844.1| RNA methyltransferase [Streptococcus parasanguinis ATCC 15912]
          Length = 180

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 17  IVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSM-A 252
            + ++         +  S  + +        D      + G E KGL             
Sbjct: 77  EEFMEAARDGQVHLV--SKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQYEEKAI 134

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            + M    +++LNVSN   V +  Y     
Sbjct: 135 RIPMNDEHVRSLNVSNT--VCMIVYEALRQ 162


>gi|121607435|ref|YP_995242.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121552075|gb|ABM56224.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 168

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 4/150 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +        E   + ++     E+   +  ++ 
Sbjct: 4   IVLVEPEIPPNTGNVIRLAANTGCTLHLIEPLGFSMEDRRMRRAGLDYHEYARVLCHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              L+       +   L++ S + +           + GAE +GL    +          
Sbjct: 64  AAFLRTARPDASRMFALTTQSLQWVHATCFRPGDWFVFGAETRGLAAALRASFAPAQCLR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SNA AV ++    QN FA
Sbjct: 124 LPMIEGQRSLNLSNAVAVTVFEAWRQNGFA 153


>gi|33865253|ref|NP_896812.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
 gi|33632422|emb|CAE07234.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
          Length = 238

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-I 192
           +++VL     P NIG++ R    F  D +               + A  A   +      
Sbjct: 3   VVVVLVEPAGPLNIGSVARLCANFGVDALRLVNPRCEVLCDDALRMAVHATPLLRQATIH 62

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK--------NDKIALILGAEGKGLRPKT 244
            +L  A+    S    T G       PL+            +   AL+ G E +GL    
Sbjct: 63  PDLEAAIGDC-SRVIATCGRLDHGGIPLQTPDTAINWLLAGDPPHALVFGREDRGLTNDE 121

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                 +  LH      +LN+S+A AV L+    H
Sbjct: 122 LRLCQRVLTLHSQAAYPSLNLSHAVAVVLHDLARH 156


>gi|319785734|ref|YP_004145209.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464246|gb|ADV25978.1| RNA methyltransferase, TrmH family, group 2 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 158

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 8/148 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +        E   L ++     E+       +L
Sbjct: 8   VLLYQPEIPPNTGNVIRLCANTGARLHLIEPLGFSLEDRQLRRAGLDYHEYASLQVHPDL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSM 251
             AL+++     +   LS+  +   +Q    D  A + G E +GL         E     
Sbjct: 68  ATALERIAPK--RLFALSTRGQVRHDQPAYADGDAFLFGCETRGLPEDVLGSIPEA--QR 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             L M    ++LN+SNA AV ++     
Sbjct: 124 LRLPMRPGNRSLNLSNAVAVLVFEAWRQ 151


>gi|254368173|ref|ZP_04984193.1| rRNA methylase [Francisella tularensis subsp. holarctica 257]
 gi|134253983|gb|EBA53077.1| rRNA methylase [Francisella tularensis subsp. holarctica 257]
          Length = 63

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +A L M G + +LNVS A  +ALY T    
Sbjct: 28  DFLAKLPMLGEVSSLNVSVATGIALYETVRQR 59


>gi|28868627|ref|NP_791246.1| TrmH family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851865|gb|AAO54941.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331019394|gb|EGH99450.1| RNA methyltransferase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 257

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVR 158


>gi|16082580|ref|NP_394470.1| rRNA methylase [Thermoplasma acidophilum DSM 1728]
          Length = 251

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 25/154 (16%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMH 203
            NIGA+ RS        +I        E       + G    +    I  +    + +  
Sbjct: 22  GNIGAVARSMWNSGLRHLIIIGNRPDDE---AFARSMGGRFILENAEIYDDFASVISR-- 76

Query: 204 SWGFQTIGLSSDSKKPLEQ----------------EIKNDKIALILGAEGKGLRPKTQET 247
              F  I  +S +    E+                  +  KIAL+ G E  GLR +  E 
Sbjct: 77  ---FNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQGGKIALVFGREDDGLRNEEIEK 133

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ++         N+S+A A+ LY+    F 
Sbjct: 134 CNYFINIPGNPEYPVYNLSHAVAIILYVMFTRFN 167


>gi|300812741|ref|ZP_07093148.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496281|gb|EFK31396.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 185

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        +   L ++A      +   R  +L
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLDLIEPLGFRLDDKHLKRAALDYGGEVEIRRHDDL 64

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L  +  ++  +     SS +   ++   ++     + G E  GL     ++ A    
Sbjct: 65  RAFLATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRETTGLPETFMRQYADRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+A N+SN+AA+ ++     
Sbjct: 125 RIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|109897560|ref|YP_660815.1| RNA methyltransferase [Pseudoalteromonas atlantica T6c]
 gi|109699841|gb|ABG39761.1| RNA methyltransferase, TrmH family, group 1 [Pseudoalteromonas
           atlantica T6c]
          Length = 241

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + +   NIG+  R+        ++     SP +     KS++ A      +  + +
Sbjct: 7   IVLVNTSHTGNIGSTARAMKTMGLSQLVLVDPVSPPDG----KSSALAAGAGDVLANAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
              + +  +     +G S+ S+                  E+    +AL+ G E  GL  
Sbjct: 63  VSTVAEAVADCGLVVGTSARSRTLSWPMLEPRECGEKLVSEVPKYPVALVFGRENNGLSN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
           +  +       +       +LN+  AAAV    Y  +
Sbjct: 123 EELQQCHFHVCIPANPEYSSLNL--AAAVQTLCYEIR 157


>gi|116327528|ref|YP_797248.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116331859|ref|YP_801577.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116120272|gb|ABJ78315.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116125548|gb|ABJ76819.1| rRNA methylase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 153

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 9/142 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R  VA   +  I  +           ++     + +     S+L +    + 
Sbjct: 13  PPNTGNIARLCVALGAELHIIGQASFDLSEKAARRAGLDYWDKVKISFHSSLEEYKAILP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMA-HLHMPGIIK 261
           S G     +S   K+        +  A + G E  G+  K + + +      + M     
Sbjct: 73  S-GTDPYLISVYGKRSYTDVQYKEGDAFLFGNETSGVPTKMKNSWSEERILKIPME---D 128

Query: 262 A---LNVSNAAAVALYITQNHF 280
           +   LN+SN+ AV  Y      
Sbjct: 129 SSRCLNLSNSVAVISYEAMRQI 150


>gi|114771074|ref|ZP_01448514.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
 gi|114548356|gb|EAU51242.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium HTCC2255]
          Length = 249

 Score = 60.4 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 13/156 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           ++L       NIGA  R+ + F  + +          +A     A+GA   +  ++    
Sbjct: 13  IILIGPQMGENIGASARAMLNFGIENMSIVSPRDGWPNARAKSMAAGAGRVLDTVQLFDK 72

Query: 195 LTDALQKMHSWGFQTIG---------LSSDSKKPLEQEI--KNDKIALILGAEGKGLRPK 243
            +DAL+ + ++ F T           +S +      + +  K  K+  + G E  GL  +
Sbjct: 73  TSDALKNL-NFVFATTARTRDLAKEVMSPERAMMYARALTQKGKKVGFMFGPESSGLSNE 131

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               A  +  + +     +LN+S    +  Y  Q  
Sbjct: 132 DIAQANVLVSVPVNPEFSSLNLSQCVLLLAYEWQRQ 167


>gi|301095548|ref|XP_002896874.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
 gi|262108624|gb|EEY66676.1| SpoU rRNA Methylase family [Phytophthora infestans T30-4]
          Length = 709

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               L+M    V+   N+  + R+   F+   ++        +       ++ A + +P 
Sbjct: 508 PRQPLIMCASLVDKVPNLAGLARTCEIFNAQKLVVPNLRMTQQDVTFVNVSATAHKWMPL 567

Query: 190 IRI----SNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLR 241
             +     +L  AL +    G+  + +  + S   L       K+ L+LG E +G+ 
Sbjct: 568 EEVRPQGDDLRRALVRWKREGYTIVAVEQTASSVSLASYTLPRKMVLVLGREKEGIP 624


>gi|197104457|ref|YP_002129834.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
 gi|196477877|gb|ACG77405.1| tRNA/rRNA methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 261

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 19/161 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              +++L+      NIGA+ R    F    +                SASGA   +   R
Sbjct: 7   PAPVIILNTPQLAENIGAVARVMANFGLSDLRLVNPRDGWPLERAWASASGADWPLNAAR 66

Query: 192 I-SNLTDALQKMHSWGFQTIGLSSDSKK--------------PLEQEIKNDKIALILGAE 236
           +  ++  A+  +          ++  ++                       ++ L+ G E
Sbjct: 67  VYDSVAAAIADLQ----LIYATTARPRELQLPVLTPRRAAGDLHAAAAAGQRVGLLFGGE 122

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             GL  +      ++  + +    ++LN++ A A+  Y  +
Sbjct: 123 RAGLETQDIALCQAVVTIPIDPRFRSLNLAQAVAINAYEWR 163


>gi|13541410|ref|NP_111098.1| rRNA methylase [Thermoplasma volcanium GSS1]
 gi|14324793|dbj|BAB59720.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 250

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 23/162 (14%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ +VL       NIGA+ RS        +I        E       + G  +    +  
Sbjct: 10  RIWVVLVQPKYQGNIGAVARSMKNSGLSKLIIVGNRPDDE---AFARSMGGRQ---ILEN 63

Query: 193 SNLTDALQKMHSWGFQTI-GLSSDSKKPLEQ---------------EIKNDKIALILGAE 236
           + + D+L+++    F  + G SS +   L++               E +  K+AL+ G E
Sbjct: 64  AEIVDSLEEI-VHRFTIVAGTSSTASSNLKRFRRLPVDPETFWKQMESQTGKVALVFGRE 122

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             GLR +  +      ++         N+S+A A+ LY+   
Sbjct: 123 DDGLRNEELDLCNYFIYIPGNPDYPVYNLSHAVAIVLYVMYR 164


>gi|186682631|ref|YP_001865827.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186465083|gb|ACC80884.1| RNA methyltransferase, TrmH family, group 1 [Nostoc punctiforme PCC
           73102]
          Length = 246

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 53/163 (32%), Gaps = 27/163 (16%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L +VL     P NIGAI R    F    ++         S         A+     I 
Sbjct: 4   AGLRIVLVEPAGPINIGAIARVMKNFGLYNLVLVNPQCDPLSTEAL---MMAVHAQEIIE 60

Query: 192 ISNLTDAL-QKMHSWGFQTIGLSS---DSKKPLEQ---------EIKNDKIALILGAEGK 238
            + L   L + +H    + I  +      + PLE          E      ALI G E +
Sbjct: 61  SAVLVATLPEALHGC-VRAIATTGRVRSLETPLENPRTALPWLLEEPEKPTALIFGREDR 119

Query: 239 GLRPKTQETATSMAHLHMPGIIKA-----LNVSNAAAVALYIT 276
           GL  +    A     +       +     LN++ A A+  Y  
Sbjct: 120 GLSNEELNYAQRFVGIP-----TSKDYVALNLATAVAICCYEL 157


>gi|313201578|ref|YP_004040236.1| TrmH family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440894|gb|ADQ85000.1| RNA methyltransferase, TrmH family, group 1 [Methylovorus sp.
           MP688]
          Length = 254

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 20/163 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA--VLAKSASGALEHIPY 189
           S+  +VL   + P NIG+   +A A    G+   K  +P +         A GA++ +  
Sbjct: 9   SRFRVVLCQPSHPGNIGS---TARAMKVMGLHDLKLVNPEKFPDNEANALACGAVDILEN 65

Query: 190 IRI-SNLTDAL----------QKMHSWGFQTIG---LSSDSKKPLEQEIKND-KIALILG 234
            ++ S L +AL           +      + +     ++++++ L Q    D KIAL+ G
Sbjct: 66  AQVCSTLEEALSGCTLAIGLSARKRQLSHRLVSVREAATEARELLLQSAHEDSKIALVFG 125

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            E  GL     +    +A +       +LN++ A  V  Y  +
Sbjct: 126 TEMSGLSNAELDRCQLLAMIPTDPGYWSLNLAAAVQVMCYEVR 168


>gi|221133855|ref|ZP_03560160.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Glaciecola sp. HTCC2999]
          Length = 238

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 26/167 (15%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD +R     +VL + +   NIG+  R+        +      S  +    A +A     
Sbjct: 2   LDNIR-----IVLVNTSHTGNIGSTARAMKTMGLSDLYLVDPVSAPDGKSSALAAGAGDV 56

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALI 232
                 +S+L++A++         +G S+ S+                 QE +   +AL+
Sbjct: 57  LANATIVSDLSEAVKDCS----LIVGTSARSRTLPWPMLTPRECGVKMVQEGQKGPVALV 112

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
            G E  GL  +  +       +       +LN+  AAAV    Y  +
Sbjct: 113 FGRENNGLSNEELQLCHFHVCIPANPEYSSLNL--AAAVQTLCYEIR 157


>gi|260790089|ref|XP_002590076.1| hypothetical protein BRAFLDRAFT_83346 [Branchiostoma floridae]
 gi|229275264|gb|EEN46087.1| hypothetical protein BRAFLDRAFT_83346 [Branchiostoma floridae]
          Length = 1561

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 126  LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT--TKRYSPSESAVLAKSASGA 183
            +  VR   L++V   ++ P N+G + R+   F    ++    K         L+ S+ G 
Sbjct: 1451 IKVVRKGHLVVVASLIDKPTNLGGLCRTCEIFGVSTLVLGSMKYVEDKTFQQLSVSSQGW 1510

Query: 184  LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDKIALILG 234
            + +I  +R   L + +++M   G+  IG+   +    L +    DK  L+LG
Sbjct: 1511 V-NIQEVRPGELPEYVEEMRRQGYFLIGVEQTADSRNLTEFTFPDKSLLLLG 1561


>gi|237728908|ref|ZP_04559389.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909530|gb|EEH95448.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 157

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E    +R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVLRHPDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              +        +   T G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  AAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y   +   
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWHQLG 149


>gi|70928608|ref|XP_736490.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56511067|emb|CAH76189.1| hypothetical protein PC000335.01.0 [Plasmodium chabaudi chabaudi]
          Length = 110

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 25/109 (22%)

Query: 197 DALQKMHSWGFQTIGLS-SDSKKPLEQEI--------KNDKIALILGAEGKGLRPKTQET 247
           + +  +   GF  +  S   +   +   +        KN+K+ +ILG E KGL     + 
Sbjct: 1   NFISSLKEKGFTVLSTSIPKNNTQMTNFVELKNVKINKNEKVMIILGNESKGLNEDIIKN 60

Query: 248 ATSMAHLH--------MPG--------IIKALNVSNAAAVALYITQNHF 280
           + +  +++         P         I+ +LNV+NA ++ L+   ++ 
Sbjct: 61  SDNCIYINNLFDEKNIQPNLKNANDNLIVNSLNVNNACSIILHHLHSNM 109


>gi|15893988|ref|NP_347337.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum ATCC 824]
 gi|15023579|gb|AAK78677.1|AE007585_4 Predicted tRNA-methylase (SpoU class) [Clostridium acetobutylicum
           ATCC 824]
 gi|325508114|gb|ADZ19750.1| tRNA-methylase (SpoU class) [Clostridium acetobutylicum EA 2018]
          Length = 160

 Score = 60.1 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 4/155 (2%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L +VL     P N G I R+ V  +    +        +   L ++     + + 
Sbjct: 3   LGQENLNIVLFQPEIPQNTGNIARTCVLTNSKLHLIKPLGFSLDEKHLRRAGLDYWKDLD 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                +  +  +K     F     ++      +    N    +I G E  GL  + +E+ 
Sbjct: 63  LSLYDSYDELREKYKDSTF--YFSTTHGNGFYDDVKFNQGDFIIFGRESCGLPDEIRESD 120

Query: 249 -TSMAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
                 + M     ++LN+SN  A+  Y     F 
Sbjct: 121 PDRCIRVPMVKTSTRSLNLSNTVAIVAYEAIRQFG 155


>gi|255031038|ref|ZP_05302989.1| rRNA methylase [Listeria monocytogenes LO28]
          Length = 39

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + P+ Q+  +   ++ + G  ++LNV+ AA + LY  + 
Sbjct: 1   MSPELQDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK 39


>gi|209966676|ref|YP_002299591.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
 gi|209960142|gb|ACJ00779.1| RNA methyltransferase, TrmH family, putative [Rhodospirillum
           centenum SW]
          Length = 153

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 3/136 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ++R+         I        +   L +S     E     R  N +       
Sbjct: 11  PQNAGTLIRTGACLDVPVDIVEPCGFILDDTRLRRSLMDYGELAAVSRHVNWSAFAASRR 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + + + +D   P      +    L+LG E  G  P+      +  H+ M    ++L
Sbjct: 71  G---RIVLVETDHGVPYTDFAFHPDDTLLLGRESAGTPPEVAAACHAAVHIPMHPGARSL 127

Query: 264 NVSNAAAVALYITQNH 279
           NV+ AAA+ L      
Sbjct: 128 NVAIAAAMVLGEALRQ 143


>gi|323699259|ref|ZP_08111171.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio sp.
           ND132]
 gi|323459191|gb|EGB15056.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           desulfuricans ND132]
          Length = 252

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 17/157 (10%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L++VL     P NIG+  R+ +      ++    Y+ +    L  + + A      +  
Sbjct: 4   ELVVVLFRPKYPENIGSAARACLNMGVSRLVVVDPYNFNMDKALPLATAHARH---ILTS 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGK 238
           + + D L +         G ++               +    ++     ++A++ G E K
Sbjct: 61  ARIVDTLAQAVEGCTAVFGTTARTGGWRKGIMNPETLANVVDDRLRTGGRVAVVFGPEDK 120

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           GL  +     + +  +       +LN++ A  V LY 
Sbjct: 121 GLTNEETSVCSGLVTIPTSREDTSLNLAQAVVVVLYE 157


>gi|257093601|ref|YP_003167242.1| TrmH family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046125|gb|ACV35313.1| RNA methyltransferase, TrmH family, group 1 [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 265

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 22/174 (12%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
             +P     L+ +R     +VL H + P NIGA  R+        ++        +   +
Sbjct: 5   ARSPSSGVPLERIR-----IVLSHTSHPGNIGAAARAMKTMGVSRLVLVNPKRFPDDEAV 59

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-------------DSKKPLEQE 223
           A+ A+GA + +   ++    DA   +         +S+              +   L   
Sbjct: 60  AR-AAGADDILGQAQVCTTLDA--ALADT-VWVCAVSARHRNLGPPALPARQAAVDLVAR 115

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               ++AL+ G E  GL     +       +       +LN++ A  +  Y  +
Sbjct: 116 AGAGEVALLFGNETAGLSNAEVQRCRQTVFIPADPGYTSLNLAAAVQLLCYELR 169


>gi|51102914|gb|AAT96063.1| group 1 trmH family protein [Pseudomonas viridiflava]
          Length = 255

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLIGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                 K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALTGCR----LVLGTSARDRSLPWPMLDPRASGVKVVEQAGQGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|87119545|ref|ZP_01075442.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
 gi|86165021|gb|EAQ66289.1| RNA methyltransferase TrmH, group 1 [Marinomonas sp. MED121]
          Length = 241

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 20/160 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIGA  R+        +              ++++         + +  L
Sbjct: 6   IVLVNTSHPGNIGAAARAMKNMGLARLYLVAPKVFPSDEADSRASGATDILENAVVVDTL 65

Query: 196 TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +A+          +G S+              + + + +E      A + G E +GL  
Sbjct: 66  EEAIADCQ----LVVGTSARERHIPWPLVDPRQAAEMVHEEQLES--AFVFGREDRGLTN 119

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFA 281
           +  +      H+       +LN+  A  V  Y  +  H A
Sbjct: 120 EELQRCHYHVHIPSVESFSSLNLGAAVQVLAYELRMRHLA 159


>gi|332533398|ref|ZP_08409263.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037107|gb|EGI73564.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 170

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 14/141 (9%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEHIPYIRISNLTDALQKM 202
           P N+G +LR+A  +    +  T       +A    +     +E IP     N    L+ +
Sbjct: 16  PTNVGGVLRAAGCYDAKQVFFTGNR--YLNAKKFHTDTKNVVERIPLTETDN----LEAI 69

Query: 203 HSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              G   + +   +   PL +    +    + G E   +     +    + ++   G + 
Sbjct: 70  KPQGATVVVIELIEGATPLPEFKHPENAFYVFGPEDGSVSKDVLKWCDEVVYIPTIGCM- 128

Query: 262 ALNVSNAAAVALYITQNHFAK 282
             N++    V LY   +  AK
Sbjct: 129 --NLAATCNVVLY---DRLAK 144


>gi|152972456|ref|YP_001337602.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238897050|ref|YP_002921796.1| putative tRNA/rRNA methyltransferase YibK [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262040658|ref|ZP_06013896.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329996841|ref|ZP_08302600.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
           92-3]
 gi|150957305|gb|ABR79335.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549378|dbj|BAH65729.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259042022|gb|EEW43055.1| TrmH family RNA methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328539252|gb|EGF65280.1| RNA methyltransferase, TrmH family, group 2 [Klebsiella sp. MS
           92-3]
          Length = 157

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFSLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRHADY 63

Query: 196 TDALQKMHSW---GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +            T G  + S    +         L+ G E +GL     +      
Sbjct: 64  AAFVASAQPQRLFALTTKGTPAHSAVSYQDGDF-----LMFGPETRGLPASILDALPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|51892745|ref|YP_075436.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
           14863]
 gi|51856434|dbj|BAD40592.1| tRNA/rRNA methyltransferase [Symbiobacterium thermophilum IAM
           14863]
          Length = 257

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 26/172 (15%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           P+    LD     ++ +VL    D  N+ AI+R    F    +   +  +     +    
Sbjct: 2   PMQPSPLD-----RVALVLYQPQDVVNVAAIIRVMSNFGLSDLRLVEPAAFDPHRI---- 52

Query: 180 ASGALEHIP--YIRISNLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEI 224
            +G   H      R          +   G  T+G +   ++              +  + 
Sbjct: 53  -AGIAHHTEPLIARTRRFPTLEAALADCGL-TLGTTGRPRETERQVLPPRAAAPMILDQA 110

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  ++A++ G E  GL     +    +  +      ++LN++ AA V  Y  
Sbjct: 111 RTQRVAILFGPERDGLPNAALDLCHGVITIPTHPFNRSLNLAQAALVIAYEL 162


>gi|116690871|ref|YP_836494.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|116648960|gb|ABK09601.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           cenocepacia HI2424]
          Length = 172

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 5/166 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
              APL  P  +    +   +VL     P N G ++R          +      P + A 
Sbjct: 3   ARVAPLRPPQPN---RNMFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDAR 59

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++     E+       +    +        +    ++                 + G+
Sbjct: 60  MRRAGLDYHEYAQMRVHRDWDAFVAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGS 119

Query: 236 EGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E +GL  +  E         L M    ++LN+SN  AV ++     
Sbjct: 120 ETRGLPAELLERFPNEQRVRLPMRPDNRSLNLSNTVAVVVFEAWRQ 165


>gi|116051842|ref|YP_789315.1| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889899|ref|YP_002438763.1| putative methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|254242508|ref|ZP_04935830.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
 gi|296387667|ref|ZP_06877142.1| RNA methyltransferase [Pseudomonas aeruginosa PAb1]
 gi|313109235|ref|ZP_07795203.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
 gi|115587063|gb|ABJ13078.1| putative rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195886|gb|EAZ59949.1| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192]
 gi|218770122|emb|CAW25884.1| probable methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|310881705|gb|EFQ40299.1| putative methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 257

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 18/156 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIG   R+        ++  +  S      +A+++ GA + +   R+ + 
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GATDILDAARVVDT 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGKGLR 241
            +  + +       +G S+  ++               LE    N ++AL+ G E  GL 
Sbjct: 66  LE--EALSGCSV-VLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +      H+       +LN++ A  V  Y  +
Sbjct: 123 NEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVR 158


>gi|260889011|ref|ZP_05900274.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254]
 gi|260861071|gb|EEX75571.1| RNA methyltransferase, TrmH family [Leptotrichia hofstadii F0254]
          Length = 157

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 8/151 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +     N G I R+ V  +    +        +   + ++     + +      N 
Sbjct: 7   IVLLNPEIHVNTGNIGRTCVLTNTKLHLIKPLGFELDDKKIKRAGLDYWKDVQLFVWENW 66

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAH 253
               Q+ + +   +    ++ +K+       ND   ++ G E +G+  +       S   
Sbjct: 67  EHFWQENIENSNAKIYFATTKTKQRYTDVKFNDNDYIMFGPESRGIPEEILNKYKESNIT 126

Query: 254 LHMP--GIIKALNVSNAAAVALYI--TQNHF 280
           + M   G   +LN+SNA A+ L+    QN+F
Sbjct: 127 IPMLPLGR--SLNLSNAVAIVLFEALRQNNF 155


>gi|119713616|gb|ABL97667.1| RNA methyltransferase [uncultured marine bacterium EB0_39H12]
          Length = 249

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 61/170 (35%), Gaps = 24/170 (14%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           L   LD V+     +VL     P NIGA  R+        +I  +           + + 
Sbjct: 8   LLELLDTVK-----IVLVGTTHPGNIGAAARAMKNMGFRKLILVEPKEFPSDVATYR-SK 61

Query: 182 GALEHIPYIRISN-LTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKND 227
            A + +    I N L  A+          IG S+             +S + + + +   
Sbjct: 62  AAKDILEEAEIFNTLEQAVADCE----LVIGTSARDRKVPWPILNPKESAETVVKNLPQQ 117

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           K+AL+ G E +GL  +         H+       +LN++ A  + +Y  +
Sbjct: 118 KVALVFGREDRGLTNEELGLCNFHVHIPTDPDYSSLNLAQAVQILVYEIR 167


>gi|157374781|ref|YP_001473381.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3]
 gi|157317155|gb|ABV36253.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sediminis HAW-EB3]
          Length = 177

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 14/154 (9%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKS-ASGAL 184
           ++ S + + L +   P N+G I+R+A  +  D +  T +    + S       +   GA 
Sbjct: 1   MKQSYVSIGLVNPKSPTNVGGIMRAAGCYRVDEVFYTGKRYPLAASNGTAQYNTDTKGAG 60

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRP 242
           + IP   + +L DA       G + I +   +   PL +     K   + G E  G +  
Sbjct: 61  QQIPLSGVESLIDAGPD----GVKIICVDLVEGAIPLPEFEHPAKAIYVFGPE-DGTISQ 115

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +    A ++ ++   G +   N++ +  V LY  
Sbjct: 116 QVINRADAVVYVPTVGCM---NLAASVNVLLYDR 146


>gi|238750818|ref|ZP_04612316.1| Methyltransferase [Yersinia rohdei ATCC 43380]
 gi|238710962|gb|EEQ03182.1| Methyltransferase [Yersinia rohdei ATCC 43380]
          Length = 172

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 25/166 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHDY 63

Query: 196 TDALQKMHSWGFQTI------------------GLSSDSKKPLEQEIKNDKIALILGAEG 237
              L   +  G Q++                  G  + S    +         L+ G E 
Sbjct: 64  QAFLDSENLDGAQSVSNESTGTESARLFALTTKGTPAHSAVSYQINDY-----LLFGPET 118

Query: 238 KGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +GL P   +   A     + M    +++N+SNA +V +Y       
Sbjct: 119 RGLPPNVLDALPAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLG 164


>gi|187777195|ref|ZP_02993668.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
           15579]
 gi|187774123|gb|EDU37925.1| hypothetical protein CLOSPO_00741 [Clostridium sporogenes ATCC
           15579]
          Length = 160

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   L ++     +++      + 
Sbjct: 10  IVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLTIYESY 69

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
            +  +K     F     ++           +D   ++ G E  GL  + ++ +       
Sbjct: 70  EELREKYKDSNF--YFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEIRD-SDPSKCIR 126

Query: 254 LHMPGIIK-ALNVSNAAAVALYITQNHFA 281
           + M      +LN+SN  A+  Y       
Sbjct: 127 VPMINTTTRSLNLSNTVAIVTYEALRQVG 155


>gi|330872894|gb|EGH07043.1| RNA methyltransferase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 257

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLARLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVR 158


>gi|268593333|ref|ZP_06127554.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
           DSM 1131]
 gi|291311030|gb|EFE51483.1| RNA methyltransferase, TrmH family, group 2 [Providencia rettgeri
           DSM 1131]
          Length = 167

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R       D  +        +   L ++    L++  +  I + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFDLHLIHPLGFTWDDKRLRRA---GLDYSEFADIKHH 60

Query: 196 TDALQKMHSWGF-----------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            D    + S G            +   L++  K         +   L+ G E +GL P  
Sbjct: 61  HDYFAFLKSEGLNPDNNQSESGARVFALTTKGKPSHSNVSYQENDYLMFGPETRGLPPYV 120

Query: 245 QETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
            +         + M    +++N+SN+ AV ++       
Sbjct: 121 LDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQLG 159


>gi|315187477|gb|EFU21233.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta thermophila DSM
           6578]
          Length = 236

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 15/155 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L       N+G + R+      + ++  +      S    + A  A   +   R+   
Sbjct: 4   VILVEPEGAENVGMVARAMANMGRERLVLVRPACDHLSPPAQRYAVHAESILEGARVCET 63

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK----------PLEQEIKNDK-IALILGAEGKGLRPK 243
           L +AL        +        +           P        + +AL+ G E  GL  +
Sbjct: 64  LAEALD---GVDLRVAVTRRHGQYRMPDLYLPEFPAFLAEFTGREVALVFGRERTGLTSE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             +    +  +   G   +LN++ A  V LY    
Sbjct: 121 EVQACDLILTIPSSGSCPSLNLAQAVMVVLYELMR 155


>gi|90578908|ref|ZP_01234718.1| 23S rRNA methyltransferase [Vibrio angustum S14]
 gi|90439741|gb|EAS64922.1| 23S rRNA methyltransferase [Vibrio angustum S14]
          Length = 170

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 65/155 (41%), Gaps = 12/155 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++++ +++ L +   P N+GA+LR+A  +  D +I T       +     +    L+ IP
Sbjct: 1   MKDTSVIIGLSNPKSPTNVGAVLRAAGCYQADAVIYTGTRYDKAAKFQTDTKQM-LQTIP 59

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              + ++ D L +      + + +  ++    L      +K   I G E   +     + 
Sbjct: 60  LTGVESMLDDLPE----DMKVVCVDFAEGATLLPHFTHPEKAIYIFGPEDGSIAQDVADK 115

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A  + ++   G +   N++ +  V LY   +  AK
Sbjct: 116 ADHVVYVPTVGCM---NLAASVNVVLY---DRLAK 144


>gi|90416184|ref|ZP_01224116.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207]
 gi|90331909|gb|EAS47123.1| tRNA/rRNA methyltransferase [marine gamma proteobacterium HTCC2207]
          Length = 154

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E       ++L
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGFRLHLIEPLGFDLDDKKLRRAGLDYREFQSLKVHASL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            +A ++      +   LS+            +  AL+ G E +GL    ++      +  
Sbjct: 64  -EAYRQSQQPK-KIYALSTKGTVCYSSARFEEGDALLFGPETRGLPADVRDGLGTEQVLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           L M    ++LN+SN  ++ +Y      
Sbjct: 122 LPMQKESRSLNLSNTVSIIVYEAWRQL 148


>gi|221199931|ref|ZP_03572974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2M]
 gi|221207400|ref|ZP_03580409.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2]
 gi|221172603|gb|EEE05041.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2]
 gi|221180170|gb|EEE12574.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           multivorans CGD2M]
          Length = 156

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              +        +    ++                 + G+E +GL  +  E   A     
Sbjct: 64  DAFVAAESPDLARIFAFTTRGSSRFHDRAFLPGDWFVFGSETRGLPAELLERFPAEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    +++N+SN  AV ++     
Sbjct: 124 LPMRPGNRSMNLSNTVAVVVFEAWRQ 149


>gi|303279154|ref|XP_003058870.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460030|gb|EEH57325.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 352

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 15/167 (8%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           ++   K      +   +  +  ++ + G   ++             L   + +   D   
Sbjct: 127 DNAQVKHFAKLVKNRAYRDEKRSVVVAGGDLLTEIFQGAGGD---QLPDADVMFARDDVE 183

Query: 86  NLPHPFPVKTV---PPQTIDKIVGKEAVHQG--LALETAP------LLSPTLDAVRNS-Q 133
            LP     + V   P   + K  G  +      +A    P       L+ + D      +
Sbjct: 184 ELPRGVRARVVIRAPEHVVKKASGLRSADGVDFVASLAMPSIVGAGALTASFDPKTKPIR 243

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
            ++ LD + DP N+G ++R+++A   D +          +  +  ++
Sbjct: 244 RVLALDGIQDPGNLGTLVRTSLALGWDAVALLPGTCDPFNDKVRFAS 290


>gi|89095322|ref|ZP_01168240.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
 gi|89080397|gb|EAR59651.1| RNA methyltransferase TrmH, group 1 [Oceanospirillum sp. MED92]
          Length = 248

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P NIG + R+        +   +          A+++         +    L
Sbjct: 7   IVLVNTTHPGNIGGVARAMKNMDFAELHLVEPKKFPHVNADARASGATDLLENALVHETL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-------------DKIALILGAEGKGLRP 242
            +A+          +G S+  +      +                KIA++ G E +GL  
Sbjct: 67  EEAIADCQ----LVVGTSARGRHIPWPVVDPRELAAIVGPVMDEKKIAIVFGREDRGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +         H+       +LN++ A  V  Y  +
Sbjct: 123 EELHLCHYHVHIPSNPEFSSLNLAAAVQVITYELR 157


>gi|217969958|ref|YP_002355192.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
 gi|217507285|gb|ACK54296.1| tRNA/rRNA methyltransferase (SpoU) [Thauera sp. MZ1T]
          Length = 170

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A    C   +            LA++     +        + 
Sbjct: 16  IVLYQPEIPPNTGNVIRLAANTGCRLHLVAPLGFDLSDKQLARAGLDYHDLTCLTVHPDW 75

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
               + +   G +   +S+ + +  ++       AL+ G E +GL  +            
Sbjct: 76  AHCREVL--AGRRMFAMSTRASRRHDRVDFQPGDALLFGPESRGLPEEILREFAPERRVR 133

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    +++N+SNA AV +Y     
Sbjct: 134 IPMRPTNRSVNLSNAVAVVVYEGWRQ 159


>gi|88799882|ref|ZP_01115454.1| rRNA methylase [Reinekea sp. MED297]
 gi|88777313|gb|EAR08516.1| rRNA methylase [Reinekea sp. MED297]
          Length = 254

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H +   NIG+  R+        ++     +      +A ++         + +  L
Sbjct: 16  VVLVHTSHSGNIGSAARAMKTMGFHNLVLVAPKTFPSDDAIAMASGATDILEQAVVVETL 75

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PL-------EQEIK---NDKIALILGAEGKGLRP 242
            +A+      GF  +G S+ S+    PL       EQ +    N ++AL+LG E  GL  
Sbjct: 76  EEAVA---DCGF-VVGASARSRNLPWPLVHPRQMAEQALALPDNTRVALVLGRERSGLTN 131

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                     ++       +LNV+ A  V  Y  +
Sbjct: 132 DELARCHCHVNIPANPDYSSLNVAAAVQVLCYELR 166


>gi|325922006|ref|ZP_08183810.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC
           19865]
 gi|325547509|gb|EGD18559.1| putative rRNA methylase SpoU family [Xanthomonas gardneri ATCC
           19865]
          Length = 158

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +            L ++     E+      ++L
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLRRAGLDYHEYATLQVHADL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           T AL  +     +   LS+ S    +     D  A + G E +GL     E+        
Sbjct: 68  TTALAAIAPK--RVFALSTRSSVRYDTPQFADGDAFLFGPETRGLPADVLESIPPQHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           + M    ++LN+SN  AV ++     
Sbjct: 126 VPMRPDNRSLNLSNTVAVMVFEAWRQ 151


>gi|330894480|gb|EGH27141.1| RNA methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 257

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LENALVGCR----LVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPGFSSLNLAAAVQVLSYEVR 158


>gi|332307520|ref|YP_004435371.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174849|gb|AEE24103.1| RNA methyltransferase, TrmH family, group 1 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 240

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + +   NIG+  R+        ++     SP +     K+++ A      +  + +
Sbjct: 7   IVLVNTSHTGNIGSTARAMKTMGLSQLVLVDPVSPPDG----KASALAAGAGDVLANAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
              L +  +     +G S+ S+                  E+    +AL+ G E  GL  
Sbjct: 63  VSTLAEAVADCGLVVGTSARSRTLSWPMLEPRGCGEKLVSEVPKYPVALVFGRENNGLSN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
              +       +       +LN+  AAAV    Y  +
Sbjct: 123 DELQQCHFHVCIPANPEYSSLNL--AAAVQTLCYEIR 157


>gi|154344889|ref|XP_001568386.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065723|emb|CAM43497.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 465

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T P+    +   +    ++VLD+V+DP   G +LR+A  +  D II T   +      + 
Sbjct: 69  TPPMKEQLIANHQRLNRVLVLDNVSDPGVFGTLLRTASGYQYDAIIATNHCADLYDHRVV 128

Query: 178 KSASGALEH--IPYI 190
           ++A GA     +P  
Sbjct: 129 RAARGAHFQTAVPIY 143


>gi|291320022|ref|YP_003515280.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
 gi|290752351|emb|CBH40322.1| tRNA/rRNA methyltransferase [Mycoplasma agalactiae]
          Length = 177

 Score = 59.7 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 16/156 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV-LAKSASGALEH-IPYIRIS 193
           +VL     P N   I+R+  A     +   K  S S +   L++ A+G L   I +    
Sbjct: 4   IVLFEPEIPPNTANIIRTCFAIGAK-LHIIKPISFSLNPKYLSRPAAGRLLSDIEHEVHD 62

Query: 194 NLTDALQKMHS--------WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           + +D   K           +G +T     + KK  E    N++I L+ G E  G+  +  
Sbjct: 63  SYSDFYNKYKDKNIYYITRYGLKTY-TDVNFKKEYED---NEEIWLMFGKESTGIDKQVL 118

Query: 246 -ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                +   + M   ++++N++N  A+  +      
Sbjct: 119 HNNIDNCLRIPMISKMRSINLANCVAIVGFEVMRQI 154


>gi|308188629|ref|YP_003932760.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
 gi|308059139|gb|ADO11311.1| hypothetical protein Pvag_3169 [Pantoea vagans C9-1]
          Length = 157

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E       ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDYHEFTAIKFHADY 63

Query: 196 TDALQKM---HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              +        +   T G  + S    +         L+ G E +GL  +      A  
Sbjct: 64  QAFIAAESPERLFALTTKGTPAHSAVAYQAGDY-----LLFGPESRGLPAEILAALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148


>gi|85714273|ref|ZP_01045261.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A]
 gi|85698720|gb|EAQ36589.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter sp. Nb-311A]
          Length = 156

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR       +  I      P       ++    L+ +  +R  +     Q   
Sbjct: 11  PQNTGTILRLCACLDVEAHIIEPAGFPVSDRHFRRAGMDYLDEVAIVRHDSWQKFQQWRA 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           + G + +  ++   +P       D   L+ G E  G+     + A +   + +   +++L
Sbjct: 71  ADGGRLVLFTTKGARPYLDHRFADTDILLFGRESAGVPDAVADAADATLVIPVRPGLRSL 130

Query: 264 N 264
           N
Sbjct: 131 N 131


>gi|242277748|ref|YP_002989877.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           salexigens DSM 2638]
 gi|242120642|gb|ACS78338.1| RNA methyltransferase, TrmH family, group 1 [Desulfovibrio
           salexigens DSM 2638]
          Length = 246

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 11/153 (7%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           L +VL     P N+G+  R+     C+ + +        E A    +  G       +  
Sbjct: 5   LSIVLFGTKFPENVGSSARAMTNMGCENLTLVRPASWDMEKARPLATVKGRDIVEKALIA 64

Query: 193 SNLTDALQK--------MHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRP 242
             L++AL+           + G++   ++  +  PL  EQ    +K+A++ G E +GL  
Sbjct: 65  DELSEALKDQTRVYGTTARTGGWRKGVMTPSTAAPLIVEQLRAGEKVAVVFGPEDRGLTN 124

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              +  + + ++       +LN+S A  + LY 
Sbjct: 125 DETQLCSRLINIPTSHENSSLNLSQAVLIILYE 157


>gi|13508260|ref|NP_110209.1| putative rRNA methylase [Mycoplasma pneumoniae M129]
 gi|2500863|sp|P75257|TRML_MYCPN RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase MPN_521
 gi|1673994|gb|AAB95969.1| putative rRNA methylase [Mycoplasma pneumoniae M129]
 gi|301633607|gb|ADK87161.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma pneumoniae
           FH]
          Length = 166

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 12/146 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM- 202
           P+N G I+RS  AF  +  +            + ++     + +      +    ++   
Sbjct: 16  PNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHKSWEHFIETTP 75

Query: 203 HSWGFQTI---GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHLHMPG 258
            +     +   G ++  +  + Q    +++  + G E KGL     E  + +   + +  
Sbjct: 76  PNKAIWLLTKSGTTTPDQINM-QTDNREQLYFVFGQETKGLPQTLMEQYSQNQVRIPIWN 134

Query: 259 IIKALNVS--NAAAVALYI--TQNHF 280
            ++++N+S   A    LY    QNH+
Sbjct: 135 PVRSINLSNTVAC--VLYEYAKQNHY 158


>gi|313678221|ref|YP_004055961.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
 gi|312950258|gb|ADR24853.1| RNA methyltransferase, TrmH family [Mycoplasma bovis PG45]
          Length = 177

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 6/151 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISN 194
           +VL     P N   I+R+  A      I        +   L++ A+G L   I +   ++
Sbjct: 4   IVLFEPEIPPNTANIIRTCFAIGAKLHIIKPISFSLDPKYLSRPAAGRLLSDIEHEVHNS 63

Query: 195 LTDALQKMHSWGF---QTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQE-TAT 249
            +D   K            GL + S    ++E +N ++I L+ G E  G+  +  +    
Sbjct: 64  YSDFYNKYKDKNIHYITRYGLKTYSDVDFKKEYENNEEIWLMFGKESTGIDKQVLKDNID 123

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +   + M   ++++N++N  A+  +      
Sbjct: 124 NCLRIPMINKMRSINLANCVAIVGFEVMRQI 154


>gi|119719459|ref|YP_919954.1| RNA methyltransferase [Thermofilum pendens Hrk 5]
 gi|119524579|gb|ABL77951.1| RNA methyltransferase, TrmH family, group 1 [Thermofilum pendens
           Hrk 5]
          Length = 257

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 16/148 (10%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG I RS   F    +   K    S      + A  A      +  + +  +L ++  
Sbjct: 27  QNIGYIARSMKNFCLAKLYLVKPRC-SVGLESRRYAMHAA---DIVENAVIVGSLGELVG 82

Query: 205 WGFQTIGLSS-DSKKPLEQEIKNDKIA-----------LILGAEGKGLRPKTQETATSMA 252
                   +    K PL + +   ++A           +++G E  GL  +       + 
Sbjct: 83  MHDLVACTTGVKGKPPLRRYVSPGEMASLFAESTGSKLVVIGREDWGLSAEELSICDMLV 142

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
            +       +LN S+AAA+  Y   N +
Sbjct: 143 TIEANPEYPSLNASHAAAIVFYELFNKY 170


>gi|221194595|ref|ZP_03567652.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626]
 gi|221185499|gb|EEE17889.1| RNA methyltransferase, TrmH family [Atopobium rimae ATCC 49626]
          Length = 220

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 51/211 (24%), Gaps = 65/211 (30%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +        +   L ++     + +      N 
Sbjct: 4   LVLVEPEIPANTGNIGRTCVVSGTHLHLVGPLGFSLDDKSLKRAGMAYWKSLNVSVYDNW 63

Query: 196 TDALQKMHSWGFQTIGLSS--------------------DSKKPLEQEIKNDKIALILGA 235
              ++K        +                         +KK   Q    D   LI G 
Sbjct: 64  NQFVEKNGLADMPNVSADDFTHDVNDGAVDKPRLHFLTKKAKKTYTQATYRDGDYLIFGK 123

Query: 236 EGKGLRPKTQET-ATSMAHLHMP------------------------------------G 258
           E  GL  +     A     + M                                     G
Sbjct: 124 ESLGLSEELLAKYADECERIPMLQDSVSLVNREDWSQKHDALDGEDQYSHPVLLQQDICG 183

Query: 259 I--------IKALNVSNAAAVALYITQNHFA 281
                    + ALNVSNAAA+ LY       
Sbjct: 184 NFIDPNEFSVSALNVSNAAAIVLYEALRQIG 214


>gi|330957512|gb|EGH57772.1| RNA methyltransferase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 254

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLARLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPMLDPRGAGEKVIEQAGEGAEVALVFGREHSGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|187922547|ref|YP_001894189.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           phytofirmans PsJN]
 gi|187713741|gb|ACD14965.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           phytofirmans PsJN]
          Length = 156

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A L ++     E+      ++ 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKLRRAGLDYHEYAQMNVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              + K      +    ++       +         + GAE +GL     +         
Sbjct: 64  AAFVAKESPDPARMFAFTTRGSGRFHEHAFQSGDWFVFGAETRGLPDSVLDQFANQQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  A+ ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAIVVFEAWRQ 149


>gi|322513937|ref|ZP_08067013.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
 gi|322120232|gb|EFX92187.1| TrmH family RNA methyltransferase [Actinobacillus ureae ATCC 25976]
          Length = 159

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 14/153 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E +   +  N 
Sbjct: 4   IVLYEPEIPQNSGNIIRLCANCGFRLHMIEPLGFEWDDKKLRRSGLDYHEFVDIQKYKNF 63

Query: 196 TDALQKMHSWGFQTIGLSS-----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
            D L++      +   L++      S+   E         L+ G E +G+     ++   
Sbjct: 64  EDFLERAKPK--RLFALTTKGEPNHSEVSYELGDF-----LMFGPESRGIPMAILDSLPM 116

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +    + M    +++N+SN  AV +Y     F 
Sbjct: 117 SQKIRVPMCKDSRSMNLSNTVAVVVYEAWRQFG 149


>gi|167561403|ref|ZP_02354319.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           oklahomensis EO147]
          Length = 156

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + GAE +GL P+  E         
Sbjct: 64  DAFIAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPELVERFPPEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|300714677|ref|YP_003739480.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
 gi|299060513|emb|CAX57620.1| rRNA methyltransferase CspR [Erwinia billingiae Eb661]
          Length = 157

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E       ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEFTAIKHHADY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L        +   T G  + S    +         L+ G E +GL         A  
Sbjct: 64  AAFLSAEAPQRLFALTTKGTPAHSAVSYQPGDY-----LLFGPETRGLPADILNALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMQPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|226227447|ref|YP_002761553.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
 gi|226090638|dbj|BAH39083.1| putative methyltransferase [Gemmatimonas aurantiaca T-27]
          Length = 283

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 18/158 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + + +VL    D  NIG ++R+        +   +      +    +    A +    + 
Sbjct: 7   NAVTVVLYESQDSINIGGVVRAMKNMGVRDLRLIRPCPYDPN----RVEQVAHDTRDIVE 62

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-------------SKKPLEQEIKNDKIALILGAEGK 238
                + + +  +     +G S               +   L +  +  ++A++ G E  
Sbjct: 63  RIQHFETIDEALADCVYVVGFSGRRQAARWQRHTPRTAAVDLLEFAQQGRVAIMFGREDH 122

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL  +  + + ++  +       +LNV+ A  +ALY  
Sbjct: 123 GLPNEALDRSNAICTIPTTEHF-SLNVAQACLLALYEL 159


>gi|312868266|ref|ZP_07728466.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parasanguinis F0405]
 gi|311096011|gb|EFQ54255.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           parasanguinis F0405]
          Length = 180

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 17  IVLFQPQIPQNTGNIARTCAATNSPLHIIRPMAFPIDDRKMKRAGLDYWDKLDVRFYDSL 76

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KIALILGAEGKGLRPK-TQETATSMA 252
            + ++         +  S  + +        D      + G E KGL     ++      
Sbjct: 77  EEFMEAASDGQVHLV--SKFANQTYSDVSYQDGKSHYFLFGREDKGLPEDFMRQHEEKAI 134

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNH 279
            + M    +++LNVSN   V +  Y     
Sbjct: 135 RIPMNDEHVRSLNVSNT--VCMIVYEALRQ 162


>gi|304398991|ref|ZP_07380860.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
 gi|304353451|gb|EFM17829.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. aB]
          Length = 157

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E       ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFAWDDKRLRRAGLDYHEFTAIKFHADY 63

Query: 196 TDALQKM---HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              +        +   T G  + S    +         L+ G E +GL  +      A  
Sbjct: 64  QAFIATESPERLFALTTKGTPAHSAVAYQAGDY-----LLFGPESRGLPAEILAALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMRAESRSMNLSNAVSVVVYEAWRQL 148


>gi|268680131|ref|YP_003304562.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618162|gb|ACZ12527.1| tRNA/rRNA methyltransferase (SpoU) [Sulfurospirillum deleyianum DSM
           6946]
          Length = 156

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G+I R  V   C   I            + ++       +      +L
Sbjct: 4   IVLVHPQIPQNTGSIGRMCVNADCSLHIVKPTMFEISDKTVKRAGLDYWHLLDVHVYESL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            D L+       +    ++ +KKP  +        L  G E  GL  +  +        +
Sbjct: 64  EDFLKMHADKVERFFFATTKTKKPYFEASFQAGDFLFFGGESTGLPMELMQLKWENAITI 123

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M   G   +LN + +A + LY     
Sbjct: 124 PMGKNGR--SLNQATSAGIILYDAIRQ 148


>gi|194366519|ref|YP_002029129.1| TrmH family, group 1 RNA methyltransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|194349323|gb|ACF52446.1| RNA methyltransferase, TrmH family, group 1 [Stenotrophomonas
           maltophilia R551-3]
          Length = 256

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 28/168 (16%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHI-- 187
           ++L  VL     P N+GA  R+        ++     +P         + ++GA + +  
Sbjct: 8   TRLRFVLVGTQHPGNMGAAARALKTMGLARLVL---VAPEKPLDEEAFRRSAGAEDVLGD 64

Query: 188 -PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALI 232
            P +  + L +A+          +G ++ +++   +E                   +AL+
Sbjct: 65  APVV--ATLAEAVADCR----LVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALV 118

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G E  GL  +  +   +  H+       +LN++ A  V  Y T+   
Sbjct: 119 FGRERTGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQL 166


>gi|146308529|ref|YP_001188994.1| RNA methyltransferase [Pseudomonas mendocina ymp]
 gi|145576730|gb|ABP86262.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas mendocina
           ymp]
          Length = 262

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 23/170 (13%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++  LD +R     +VL   + P NIG   R+        ++            +A+++ 
Sbjct: 1   MAALLDKIR-----VVLVGTSHPGNIGGAARAMKNMGLSRLVLVAPEDFPSGDAVARASG 55

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKND 227
                   +  + + D L++        +G S+                    EQ     
Sbjct: 56  AT----DVLDAAQVVDTLEEALVGCTLVVGTSARDRRIPWPLLDPRECGVTSCEQAAVGG 111

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 112 EVALVFGREYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVR 161


>gi|91781671|ref|YP_556877.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
 gi|91685625|gb|ABE28825.1| RNA methyltransferase TrmH, group 2 [Burkholderia xenovorans LB400]
          Length = 156

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+      ++ 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMNVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETAT-SMAH 253
              + K      +    ++       +         + GAE +GL      + A      
Sbjct: 64  AAFIAKESPDPARMFAFTTRGSGRFHERAFQSGDWFVFGAETRGLPDPVLGQFADEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|262037571|ref|ZP_06011027.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
 gi|261748393|gb|EEY35776.1| putative tRNA/rRNA methyltransferase [Leptotrichia goodfellowii
           F0264]
          Length = 156

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P+N G I R+ V       +        +   + +S     + +      + 
Sbjct: 3   IVLLNPEIPYNTGNIGRTCVLTKTKLHLIKPLGFSLDEKAVKRSGLDYWKDVQLYVWEDF 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAH 253
               ++ + +        ++ +K+            ++ G E +G+  +       +   
Sbjct: 63  EHFFKENIENRNVNLYFATTKTKRRYSDVNYGKNDYVMFGPESRGIPEEILNRYKENNIT 122

Query: 254 LHMP--GIIKALNVSNAAAVALYITQNH 279
           + M   G   +LN+SN+AA+ LY     
Sbjct: 123 IPMLPLGR--SLNLSNSAAIILYEALRQ 148


>gi|10640325|emb|CAC12139.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 291

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 25/154 (16%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMH 203
            NIGA+ RS        +I        E       + G    +    I  +    + +  
Sbjct: 62  GNIGAVARSMWNSGLRHLIIIGNRPDDE---AFARSMGGRFILENAEIYDDFASVISR-- 116

Query: 204 SWGFQTIGLSSDSKKPLEQ----------------EIKNDKIALILGAEGKGLRPKTQET 247
              F  I  +S +    E+                  +  KIAL+ G E  GLR +  E 
Sbjct: 117 ---FNVIAATSSTASSNEKHFRRLPLTPEKFWEEMSDQGGKIALVFGREDDGLRNEEIEK 173

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                ++         N+S+A A+ LY+    F 
Sbjct: 174 CNYFINIPGNPEYPVYNLSHAVAIILYVMFTRFN 207


>gi|148546113|ref|YP_001266215.1| RNA methyltransferase [Pseudomonas putida F1]
 gi|148510171|gb|ABQ77031.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida F1]
          Length = 279

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA--SGALEHIPYIRI- 192
           +VL + + P NIG   R+        ++  +   P E   +  SA  SGA + +   ++ 
Sbjct: 35  VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQ---PKEFPAVDASARASGADDVLDNAQVV 91

Query: 193 SNLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +L  AL           +  S  +  IG      K +E     ++IAL+ G E  GL  
Sbjct: 92  DSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHAKGGEEIALVFGREHAGLTN 151

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +      H+       +LN++ A  V  Y  +
Sbjct: 152 EELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 186


>gi|114569563|ref|YP_756243.1| tRNA/rRNA methyltransferase SpoU [Maricaulis maris MCS10]
 gi|114340025|gb|ABI65305.1| tRNA/rRNA methyltransferase (SpoU) [Maricaulis maris MCS10]
          Length = 249

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA----LEHIPYIRISNLTDA--- 198
           NIGA  R    F    ++         +      ++G+       + Y     + D    
Sbjct: 20  NIGAAARVMGNFGLPELVVVDPRDGWPNDKAVTMSAGSPVLGNARVEYRLGDAIHDTTRL 79

Query: 199 -LQKMHSWGF-QTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                   G  + +  + ++   ++  I   +K+A++ G E  GL  +    A  +  L 
Sbjct: 80  YATTARPRGMEKPVMTAREAVSDMKAAIEAGEKVAVMFGGEKSGLPNEAVNMADVIITLP 139

Query: 256 MPGIIKALNVSNAAAVALYI 275
           +     +LN++ A AV  Y 
Sbjct: 140 VDRSFSSLNLAQAVAVIAYE 159


>gi|290579940|ref|YP_003484332.1| putative rRNA methylase [Streptococcus mutans NN2025]
 gi|254996839|dbj|BAH87440.1| putative rRNA methylase [Streptococcus mutans NN2025]
          Length = 182

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 20  VVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D +          I   +D     E    ++    + G E KGL  +  ++ +     +
Sbjct: 80  NDFMNICSGK-LHLITKFADKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRI 138

Query: 255 HMPG-IIKALNVSNAAAVAL--YITQNH 279
            M    +++LN+SN   V +  Y     
Sbjct: 139 PMNDQHVRSLNLSNT--VCMIVYEALRQ 164


>gi|117927678|ref|YP_872229.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
 gi|117648141|gb|ABK52243.1| tRNA/rRNA methyltransferase (SpoU) [Acidothermus cellulolyticus
           11B]
          Length = 163

 Score = 59.3 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A A  C+  +          A L ++     E    +   N+  A + + 
Sbjct: 12  PPNTGNAIRLAAATGCELHLVGPLAFDMSDARLRRAGLDYHEFATVVVHPNMDAAWEVLA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHM 256
           S   +    +  +++P       D  AL+ G E  GL          T    + M
Sbjct: 72  S--GRIFAFTGRAERPYTDVEYRDGDALMFGTERTGLPDSILTDPRITERVRIPM 124


>gi|330975889|gb|EGH75955.1| RNA methyltransferase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 254

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|254522636|ref|ZP_05134691.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
 gi|219720227|gb|EED38752.1| RNA methyltransferase TrmH, group 1 [Stenotrophomonas sp. SKA14]
          Length = 275

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 28/168 (16%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHI-- 187
           ++L  VL     P N+GA  R+        ++     +P         + ++GA + +  
Sbjct: 27  TRLRFVLVGTQHPGNMGAAARALKTMGLARLVL---VAPEKPLDEEAFRRSAGAEDVLGD 83

Query: 188 -PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALI 232
            P +  + L +A+          +G ++ +++   +E                   +AL+
Sbjct: 84  APVV--ATLAEAVADCR----LVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALV 137

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G E  GL  +  +   +  H+       +LN++ A  V  Y T+   
Sbjct: 138 FGRERTGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQL 185


>gi|198282955|ref|YP_002219276.1| TrmH family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666933|ref|YP_002425158.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247476|gb|ACH83069.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519146|gb|ACK79732.1| RNA methyltransferase, TrmH family, group 1 [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 256

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL   + P NIGA  R+        ++        +       ASGA + +   ++
Sbjct: 8   GLRIVLVEPSHPGNIGAAARAMKVMGLRHLVLVSPRFFPD-PEATALASGAEDILESAQV 66

Query: 193 -SNLTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGK 238
            +NL  ALQ  H       G S+             ++   +  ++     AL+ G E  
Sbjct: 67  CTNLDTALQGCHK----VYGTSARGRRIQWPASNAREAAGEILADLDTGDCALLFGRERT 122

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL     +    + H+       +LN+  A  V  Y  
Sbjct: 123 GLTNAEMDRCQVLVHIPTADEYHSLNLGQAVQVLAYEL 160


>gi|320170137|gb|EFW47036.1| hypothetical protein CAOG_04980 [Capsaspora owczarzaki ATCC 30864]
          Length = 253

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 2/89 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S L +VL++  DPHN  A +R+A +F    +   +  S S        ASGA       
Sbjct: 39  RSSLRLVLENCMDPHNASACIRTAESFGIAHVHVIE--SFSTFRPSETVASGAHTWTLVH 96

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKP 219
              ++      +       +         
Sbjct: 97  HHPSVEHCRAALAEANCALVASDLSGNAT 125


>gi|293372858|ref|ZP_06619232.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
 gi|292632147|gb|EFF50751.1| RNA methyltransferase, TrmH family [Bacteroides ovatus SD CMC 3f]
          Length = 104

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP---FPVKTVPPQTIDK 103
           ++  ++GV  V  AL      I ++L  K+  + L  +          PV+ VP + I++
Sbjct: 4   KSEMIFGVRAVIEALQAGKE-IDKILVKKDIQSDLSKELFAALKGTLIPVQRVPVERINR 62

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAV 129
           I  K   HQG+    + +     + +
Sbjct: 63  ITRK--NHQGVIAFISSVTYQKAEDL 86


>gi|238027926|ref|YP_002912157.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877120|gb|ACR29453.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia glumae
           BGR1]
          Length = 284

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 22/192 (11%)

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
           D+I  + +         + +  P      +++ ++V    + P N+GA  R+        
Sbjct: 12  DRITLETSHPPSAPAGPSSVPPPAAGGFASARFVLV--EPSHPGNVGAAARALKTMGFSR 69

Query: 162 IITTKRYSPSE--SAVLAKSASGALEHIPYIR-ISNLTDALQKMHSWGFQTIGLSSDSKK 218
           ++                  ASGA + +   R +  L DAL  +      ++ L++ S++
Sbjct: 70  LVLVAPRVAGVLADPEAVAMASGADDVLAATRIVPTLADALAGVQ----WSVALTARSRE 125

Query: 219 P-------------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
                            ++ + +IA + G E  GL  +  E  +++AH+       +LN+
Sbjct: 126 YGPPRLAPRAAAETARAQLASGEIAFVFGNERVGLSNEHVERCSAIAHIPANPEYSSLNL 185

Query: 266 SNAAAVALYITQ 277
           S A  V  Y  +
Sbjct: 186 SQAIQVLAYELR 197


>gi|213971532|ref|ZP_03399643.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato T1]
 gi|301386137|ref|ZP_07234555.1| RNA methyltransferase [Pseudomonas syringae pv. tomato Max13]
 gi|302060163|ref|ZP_07251704.1| RNA methyltransferase [Pseudomonas syringae pv. tomato K40]
 gi|302135106|ref|ZP_07261096.1| RNA methyltransferase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923724|gb|EEB57308.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas syringae
           pv. tomato T1]
          Length = 257

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLTRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPLLDPRASGEKVIEQAGERAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|190575201|ref|YP_001973046.1| putative SpoU family tRNA/rRNA methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|190013123|emb|CAQ46755.1| putative SpoU-family tRNA/rRNA methyltransferase [Stenotrophomonas
           maltophilia K279a]
          Length = 256

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 28/168 (16%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHI-- 187
           ++L  VL     P N+GA  R+        ++     +P         + ++GA + +  
Sbjct: 8   TRLRFVLVGTQHPGNMGAAARALKTMGLARLVL---VAPEKPLDEEAFRRSAGAEDVLGD 64

Query: 188 -PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALI 232
            P +  + L +A+          +G ++ +++   +E                   +AL+
Sbjct: 65  APVV--ATLAEAVADCR----LVLGCTARARRVQLEEYLPADAAARAVAKAGEGAEVALV 118

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            G E  GL  +  +   +  H+       +LN++ A  V  Y T+   
Sbjct: 119 FGRERTGLTNEELQLCHAAVHIPSDPEFSSLNLAAAVQVLAYETRMQL 166


>gi|325917204|ref|ZP_08179431.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536594|gb|EGD08363.1| rRNA methylase, putative, group 2 [Xanthomonas vesicatoria ATCC
           35937]
          Length = 158

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +            L ++     E+      ++L
Sbjct: 8   VILFQPEIPPNTGNVIRLCANTGARLHLIEPLGFDLSDKQLKRAGLDYHEYATLQVHADL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
             AL  +     +   LS+ S    +     D  A + G E +GL  +  E+        
Sbjct: 68  PTALAAIAPK--RLFALSTRSTVRYDTPQFADGDAFLFGPETRGLPAEVLESIPPQHRLR 125

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 126 LPMRPDNRSLNLSNTVAVMVFEAWRQ 151


>gi|313123301|ref|YP_004033560.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279864|gb|ADQ60583.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 185

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 17/154 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCD-------GIITTKRYSPSESAVLAKSASGALEHIP 188
           +VL     P N G I R+    +         G     ++       L ++       + 
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLDLIEPLGFHLDDKH-------LKRAVLDYGGEVE 57

Query: 189 YIRISNLTDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245
             R  +L   L  +  ++  +     SS +   ++   ++     + G E  GL     +
Sbjct: 58  IRRHDDLRAFLATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRETTGLPETFMR 117

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + A     + M   I+A N+SN+AA+ ++     
Sbjct: 118 QYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|302338807|ref|YP_003804013.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635992|gb|ADK81419.1| RNA methyltransferase, TrmH family, group 1 [Spirochaeta
           smaragdinae DSM 11293]
          Length = 235

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 9/154 (5%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL       NIG++ R+        +         E+ VL  +          +R  
Sbjct: 4   LRIVLVEPQTAGNIGSVCRAMKNMGIHDLAIVGARDYDENRVLTLALHARDIWHNALRFP 63

Query: 194 NLTDALQKM-------HSWG-FQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           ++  AL+            G F+    L  +        I++  +A + G E  GLR   
Sbjct: 64  DIDAALEDCVFSAGITRRRGKFRKYFSLLPEEFAKRISAIESGTVAAVFGREADGLRDDE 123

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +   H+       +LN+S+A  +  Y    
Sbjct: 124 LARCSVAVHIPSSPDFPSLNLSHAVQIICYELFR 157


>gi|260599907|ref|YP_003212478.1| putative rRNA methylase [Cronobacter turicensis z3032]
 gi|260219084|emb|CBA34439.1| Uncharacterized tRNA/rRNA methyltransferase yibK [Cronobacter
           turicensis z3032]
          Length = 157

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E    +R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFTAVMRHRDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              L+       +   T G  + S    +         L+ G E +GL     +      
Sbjct: 64  AAFLEAETPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDVLPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|296185702|ref|ZP_06854111.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
           carboxidivorans P7]
 gi|296049830|gb|EFG89255.1| putative RNA methyltransferase, TrmH family, group 2 [Clostridium
           carboxidivorans P7]
          Length = 155

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +C   +        +   L ++     +++      + 
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTNCKLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEVYESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
            +  +K     F     ++       +    +   ++ G E  GL    +E +       
Sbjct: 65  EELREKYKDSTF--YFSTTHGDNFYHEVEFKEGDFIVFGRESCGLPDSVRE-SDPKRCIR 121

Query: 254 LHMPGIIK-ALNVSNAAAVALYITQNHF 280
           + M      +LN+SN  A+  Y      
Sbjct: 122 VPMINTTTRSLNLSNTVAIVAYEALRQM 149


>gi|255528031|ref|ZP_05394867.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
 gi|255508270|gb|EET84674.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
          Length = 159

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +C   +        +   L ++     +++      + 
Sbjct: 9   IVLFQPEIPQNTGNIARTCVLTNCKLHLIKPLGFSLDEKHLKRAGLDYWKYLDLEVYESY 68

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
            +  +K     F     ++       +    +   ++ G E  GL    +E +       
Sbjct: 69  EELREKYKDSTF--YFSTTHGDNFYHEVEFKEGDFIVFGRESCGLPDSVRE-SDPKRCIR 125

Query: 254 LHMPGIIK-ALNVSNAAAVALYITQNHF 280
           + M      +LN+SN  A+  Y      
Sbjct: 126 VPMINTTTRSLNLSNTVAIVAYEALRQM 153


>gi|18310293|ref|NP_562227.1| hypothetical protein CPE1311 [Clostridium perfringens str. 13]
 gi|18144973|dbj|BAB81017.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 153

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    I        +   L ++       +      + 
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTNSKLHIIKPMGFVIDDKHLKRAGLDYWSQLDLEIHESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D ++K      +    ++ ++   ++    +   ++ G E  G+       A     + 
Sbjct: 65  EDFMKKYGDK--KIYLSTTHAEDHYDEVKYEEGAFIMFGRESAGVPEDV-HNAHHGIKVQ 121

Query: 256 MPGIIK-ALNVSNAAAVALYITQNHFA 281
           M      +LN+SN  A+  Y       
Sbjct: 122 MINTTTRSLNLSNTVAIIAYEALRQIG 148


>gi|330936999|gb|EGH41095.1| RNA methyltransferase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 254

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|16762614|ref|NP_458231.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144103|ref|NP_807445.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213022241|ref|ZP_03336688.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213052716|ref|ZP_03345594.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213427159|ref|ZP_03359909.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213582082|ref|ZP_03363908.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213647895|ref|ZP_03377948.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213852189|ref|ZP_03381721.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289803688|ref|ZP_06534317.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289826010|ref|ZP_06545168.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25331702|pir||AG0975 probable RNA-methyltransferase STY4101 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504919|emb|CAD03299.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139740|gb|AAO71305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 157

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +        +   T G  + S    +         L+ G E +GL     +      
Sbjct: 64  AAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|306834125|ref|ZP_07467245.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
 gi|304423698|gb|EFM26844.1| TrmH family RNA methyltransferase [Streptococcus bovis ATCC 700338]
          Length = 181

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     E +      +L
Sbjct: 19  IVLFQPQIPQNTGNIARTCAATNAPLHIIRPMGFPIDDRKMKRAGLDYWEKLDVTFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
            + ++K           S  + K    E  ND      + G E KGL  +  +       
Sbjct: 79  DEFMEKCDGEVHLI---SKFANKVYSDENYNDGKHHYFLFGREDKGLPEEFMRANPEKAL 135

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNHFA 281
            + M    +++LN+SN   V +  Y      A
Sbjct: 136 RIPMNDEHVRSLNLSNT--VCMIVYEALRQQA 165


>gi|12045205|ref|NP_073016.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|255660268|ref|ZP_05405677.1| RNA methyltransferase [Mycoplasma genitalium G37]
 gi|1723153|sp|P47588|TRML_MYCGE RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase MG346
 gi|3844929|gb|AAC71571.1| RNA methyltransferase, TrmH family, group 2 [Mycoplasma genitalium
           G37]
 gi|166078946|gb|ABY79564.1| RNA methyltransferase, TrmH family, group 2 [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 166

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P+N G I+RS  AF  +  +            + ++     + I      +    LQ   
Sbjct: 16  PNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHKSWEHFLQATT 75

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK----IALILGAEGKGLRPKTQETATSM-AHLHMPG 258
                   L+    K  +Q    +K    +  + G E KGL     +        + +  
Sbjct: 76  ENK-TIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIMDNFKQNQIRIPIWN 134

Query: 259 IIKALNVSNAAAVAL---YITQNHFA 281
            ++++N++NA  V +   Y  QN ++
Sbjct: 135 SVRSINLANAV-VCILYEYSKQNQYS 159


>gi|269140796|ref|YP_003297497.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267986457|gb|ACY86286.1| putative tRNA/rRNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304560556|gb|ADM43220.1| tRNA (cytosine34-2'-O-)-methyltransferase [Edwardsiella tarda
           FL6-60]
          Length = 156

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFTWDDKRLRRAGLDYHEFASIRRHHDY 63

Query: 196 TDALQKMH---SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           +  L        +   T G  + S+             L+ G E +GL     ++  A  
Sbjct: 64  SAFLDGEKPTRLFALTTKGTPAHSEVTYRDGDY-----LLFGPETRGLPSTILDSLPAAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQLG 149


>gi|254369775|ref|ZP_04985785.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122734|gb|EDO66863.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 365

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +A L M G + +LNVS A  +ALY T    
Sbjct: 329 CDFLAKLPMLGEVFSLNVSVATGIALYETVRQR 361


>gi|213421680|ref|ZP_03354746.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 156

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +        +   T G  + S    +         L+ G E +GL     +      
Sbjct: 64  AAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|257388813|ref|YP_003178586.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
           mukohataei DSM 12286]
 gi|257171120|gb|ACV48879.1| RNA methyltransferase, TrmH family, group 1 [Halomicrobium
           mukohataei DSM 12286]
          Length = 241

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 14/148 (9%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKM 202
           P N+G I RS   F  D ++          +     A  A E I P  R  +  + + + 
Sbjct: 14  PGNVGTIARSMKNFGLDELLLIDPPDLPRESEAYGYAGQAREDILPEAREISFDELVTEY 73

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDK------------IALILGAEGKGLRPKTQETATS 250
           H+ G   I  + D  K +       +             A++ G E  GL     E    
Sbjct: 74  HTVGCTAI-TNEDGSKHVRYPFVTPRDLADDLAGLDADTAIVFGRERVGLTNDEIERLDQ 132

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
           +  +        LN+  AA + LY  ++
Sbjct: 133 VCSIPASEEYPVLNLGQAATIVLYELRS 160


>gi|168182173|ref|ZP_02616837.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           Bf]
 gi|237793536|ref|YP_002861088.1| hypothetical protein CLJ_B0265 [Clostridium botulinum Ba4 str. 657]
 gi|182674679|gb|EDT86640.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           Bf]
 gi|229264015|gb|ACQ55048.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 155

 Score = 59.3 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   L ++     +++      + 
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
            +  +K     F     ++           +D   ++ G E  GL  + ++ +       
Sbjct: 65  EELREKYKDSNF--YFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEIRD-SDPSKCIR 121

Query: 254 LHMPGIIK-ALNVSNAAAVALYITQNHFA 281
           + M      +LN+SN  A+  Y       
Sbjct: 122 VPMINTTTRSLNLSNTVAIVTYEALRQVG 150


>gi|255019981|ref|ZP_05292054.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970510|gb|EET27999.1| tRNA (cytosine34-2'-O-)-methyltransferase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 168

 Score = 59.3 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +        + A L ++     E     R    
Sbjct: 17  VVLFEPEIPPNTGNVIRLCANTGVVLHLIEPLGFAWDDARLRRAGLDYWEFARVRRHEQW 76

Query: 196 TDALQKMHSWGFQTIGLSSDSK-KPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMA 252
            D  + +     + +  ++ ++     +        L+ G E +GL         A    
Sbjct: 77  QDCRKALGER--RVLAFTTKAEPGSFARARFAPGDVLLFGPETRGLPADLLNQFPAEQKL 134

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    +++N+SN+ AVA++     
Sbjct: 135 RLPMRPGSRSMNLSNSVAVAVFEAWRQ 161


>gi|255020949|ref|ZP_05293005.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
           51756]
 gi|254969740|gb|EET27246.1| tRNA:Cm32/Um32 methyltransferase [Acidithiobacillus caldus ATCC
           51756]
          Length = 263

 Score = 59.3 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 19/159 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL   + P NIG+  R+      + ++  + +   + A     ASGA + +    
Sbjct: 19  PDLRIVLVETSHPGNIGSAARAMKVMGLERLVLVRPHRFPD-AQATALASGAEDLLERAE 77

Query: 192 I-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEG 237
           +  +L  AL        +  G ++  +     ++              +  +A++ G E 
Sbjct: 78  VYDDLAAALADCR----RVYGTTARDRHIAWPQLTARPAAAEIVALGASAPVAILFGNER 133

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            GL  +  +    +  +      ++LN++ A  +  Y  
Sbjct: 134 VGLSNRELDLCQCLIQIPTAEAYRSLNLAQAVQILAYEL 172


>gi|71907312|ref|YP_284899.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
 gi|71846933|gb|AAZ46429.1| RNA methyltransferase TrmH, group 1 [Dechloromonas aromatica RCB]
          Length = 254

 Score = 59.3 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 12/157 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S++ +VL   + P NIGA  R+        +         +       A+GA++ +    
Sbjct: 8   SRIRVVLCRPSHPGNIGAAARAMKTMGLSSLYLVTPKQFPD-PEADTRATGAVDVLARAT 66

Query: 192 IS-NLTDALQ--------KMHSWGF-QTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGL 240
           ++ +L +AL                   +G   ++  + + +      +AL+ G E  GL
Sbjct: 67  VTGSLKEALAGTAFAVALSARQRDIGPVLGAPRETVARLITEAAAGSDVALVFGNETVGL 126

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +      +   +       +LN+ +A  V  Y  +
Sbjct: 127 TNEEILHCQAAVTIPTNPDFSSLNLGSAVQVLCYECR 163


>gi|15673131|ref|NP_267305.1| hypothetical protein L161988 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491644|ref|YP_003353624.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis
           KF147]
 gi|12724112|gb|AAK05247.1|AE006347_5 hypothetical protein L161988 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375362|gb|ADA64875.1| RNA methyltransferase, TrmH family [Lactococcus lactis subsp.
           lactis KF147]
 gi|326406695|gb|ADZ63766.1| TrmH family RNA methyltransferase [Lactococcus lactis subsp. lactis
           CV56]
          Length = 169

 Score = 59.3 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N G I R+  A +    +            L ++     + +  +   NL D +  ++
Sbjct: 12  HFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLDDFMNSIN 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQ-ETATSMAHLHMP-G 258
             G Q   +S  ++        +D       + G E  GL  +   E       + M   
Sbjct: 72  D-GGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDE 130

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN+SN A + +Y     
Sbjct: 131 HVRSLNLSNCACMIVYEALKQ 151


>gi|313471795|sp|A0KEQ6|TRML_AERHH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 156

 Score = 59.3 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R  N 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDYHEFAEVKRWPNF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+ +     +    ++  +            AL+ G E +GL  +  E+        
Sbjct: 64  EAFLEAV--APTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEIIESLPFEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N++NA AV +Y +     
Sbjct: 122 IPMLPQSRSMNLANAVAVFVYESWRQLG 149


>gi|117618548|ref|YP_854721.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559955|gb|ABK36903.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 168

 Score = 59.3 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R  N 
Sbjct: 16  IVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDYHEFAEVKRWPNF 75

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+ +     +    ++  +            AL+ G E +GL  +  E+        
Sbjct: 76  EAFLEAV--APTRVFACTTKGRTAHSAVQFAAGDALLFGPESRGLPIEIIESLPFEQRLR 133

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N++NA AV +Y +     
Sbjct: 134 IPMLPQSRSMNLANAVAVFVYESWRQLG 161


>gi|66044482|ref|YP_234323.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255189|gb|AAY36285.1| RNA methyltransferase TrmH, group 1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330969083|gb|EGH69149.1| RNA methyltransferase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 254

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|256822726|ref|YP_003146689.1| TrmH family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256796265|gb|ACV26921.1| RNA methyltransferase, TrmH family, group 1 [Kangiella koreensis
           DSM 16069]
          Length = 277

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 29/174 (16%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
            P  D      + +VL   + P NIGA  R+        ++  K         + +S+ G
Sbjct: 8   EPQFDPQLLDSIKIVLCQTSHPGNIGAAARAMKTMGLKHLVLVKPKDYPSEEAMVRSS-G 66

Query: 183 ALEHIPYIRISNL-TDALQKMHSWGFQTIGLSSDSK-------------KPLEQEIKNDK 228
           AL+ +   ++ +   +AL          IG SS ++             + +++ ++   
Sbjct: 67  ALDVLENAQVVDTVEEALADCR----LIIGTSSRNRALPWPLIEPREMGELIKEHVEARP 122

Query: 229 IALILGAEGKGLRPKTQETATSMAHLH-----MPGIIKALNVSNAAAVALYITQ 277
           +A++ G E  GL  +  +      ++      M     +LN+++A  +  Y  +
Sbjct: 123 VAIMFGRESTGLLNEELQLCHYHVNIPANPEYM-----SLNLASAVQLIAYEIR 171


>gi|313497208|gb|ADR58574.1| RNA methyltransferase [Pseudomonas putida BIRD-1]
          Length = 283

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA--SGALEHIPYIRI- 192
           +VL + + P NIG   R+        ++  +   P E   +  SA  SGA + +   ++ 
Sbjct: 39  VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQ---PKEFPAVDASARASGADDVLDNAQVV 95

Query: 193 SNLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +L  AL           +  S  +  IG      K +E     ++IAL+ G E  GL  
Sbjct: 96  DSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGLTN 155

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +      H+       +LN++ A  V  Y  +
Sbjct: 156 EELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 190


>gi|296273391|ref|YP_003656022.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM
           7299]
 gi|296097565|gb|ADG93515.1| tRNA/rRNA methyltransferase (SpoU) [Arcobacter nitrofigilis DSM
           7299]
          Length = 154

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 13/151 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--SAVLAKSASGALEHIPYIRIS 193
           +VL     P N+G I R A A +C  +   K Y   E     + ++       +      
Sbjct: 4   IVLLEPRIPGNVGTIGRLAFAMNCR-LHLIKPYGFGEITEKEVRRAGLDYWFDLDVTEYE 62

Query: 194 NLTDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ---ETA 248
           N+ D   K  ++   F     ++ +K+               G E  GL        E  
Sbjct: 63  NIEDFWSKNPLNDRHFF---ATTKTKQVYFDAKYEVGDYFYFGREDAGLPEDLLVKNEK- 118

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                + M    ++LN++N+ ++  Y     
Sbjct: 119 -GCITIPMTNDARSLNMANSVSIVAYEALRQ 148


>gi|330504693|ref|YP_004381562.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328918979|gb|AEB59810.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
          Length = 262

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 27/172 (15%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +S  LD +R     +VL   + P NIG   R+        ++            +A+++ 
Sbjct: 1   MSALLDNIR-----VVLVGTSHPGNIGGAARAMKNMGLSRLVLVAPEDFPSGDAVARAS- 54

Query: 182 GALEHIPYIRI-SNLTDALQKMHSWGFQ-TIGLSSD--------------SKKPLEQEIK 225
           GA + +   ++   L +AL      G    IG S+                    EQ   
Sbjct: 55  GATDVLDAAQVVGTLEEALV-----GCTLVIGTSARDRRIPWPLLDPRECGVTSCEQAAA 109

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             ++AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 110 GGEVALVFGREYAGLTNEELQRCQYHVHIPSNPEFSSLNLAAAVQVLAYEVR 161


>gi|116512002|ref|YP_809218.1| rRNA methylase (SpoU class) [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107656|gb|ABJ72796.1| Predicted rRNA methylase (SpoU class) [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 169

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N G I R+  A +    +            L ++     + +  +   NL D +  + 
Sbjct: 12  HFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLQDFMDSIA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQ-ETATSMAHLHMP-G 258
             G Q   +S  ++        +D       + G E  GL  +   E       + M   
Sbjct: 72  D-GGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDE 130

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN+SN A + +Y     
Sbjct: 131 HVRSLNLSNCACMIVYEALKQ 151


>gi|222823606|ref|YP_002575180.1| rRNA methylase, SpoU family [Campylobacter lari RM2100]
 gi|222538828|gb|ACM63929.1| rRNA methylase, SpoU family [Campylobacter lari RM2100]
          Length = 155

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G+I R          I    +S  E A + ++     + +  +  +NL
Sbjct: 4   IVLVEPRIPQNTGSIGRMCFNAGFTLHIINPLFSIDEKA-VKRAGLDYWKKLNPMLWNNL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            D L+K   +  +    ++ + +        +   L  G+E  GL  +  +        +
Sbjct: 63  EDFLKKYEKFQDRFFFATTKTTQAYFDVKFQEGDFLFFGSESFGLPEQLMQKNWKNAITI 122

Query: 255 HMP--GIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  +  Y     
Sbjct: 123 PMKDCGR--SLNLATSVGIVSYEALRQ 147


>gi|330895873|gb|EGH28159.1| RNA methyltransferase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 255

 Score = 58.9 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|78484960|ref|YP_390885.1| RNA methyltransferase TrmH, group 1 [Thiomicrospira crunogena
           XCL-2]
 gi|78363246|gb|ABB41211.1| RNA methyltransferase, TrmH family, group 1 [Thiomicrospira
           crunogena XCL-2]
          Length = 268

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 63/159 (39%), Gaps = 23/159 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +V+   + P NIGA+ R+        ++         S V +  ASGA + +   ++   
Sbjct: 16  IVMVETSHPGNIGAVARAMKNMGLSQLVLVNPKDFP-SQVASARASGAADVLNDAKVVET 74

Query: 195 LTDALQKMHSWGFQTIGLSSD-----------------SKKPLEQEIKNDKIALILGAEG 237
           L  A+          +G S+                  + + + QE +++++A++ G E 
Sbjct: 75  LEQAVADCK----LVVGASARLRKVSWPQLDVRQTAELAMETVGQEDEDNQVAILFGRED 130

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            GL     +    +AH+       +LN++ A  V +Y  
Sbjct: 131 SGLSNAELDKCHYLAHIPTNPTYSSLNIAAAVQVFVYEL 169


>gi|89073053|ref|ZP_01159600.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89051271|gb|EAR56727.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 170

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 65/155 (41%), Gaps = 12/155 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++++ +++ L +   P N+GA+LR+A  +  D +I T       +     +    L+ IP
Sbjct: 1   MKDTSVIIGLSNPKSPTNVGAVLRAAGCYQADAVIYTGTRYDKAAKFQTDTKQM-LQTIP 59

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              + ++ D L +      + + +  ++    L      +K   I G E   +     + 
Sbjct: 60  LSGVESMLDDLPE----DMKVVCVDFAEGATLLPHFTHPEKAIYIFGPEDGSIAQDVADK 115

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A  + ++   G +   N++ +  V LY   +  AK
Sbjct: 116 ADHVVYVPTVGCM---NLAASVNVVLY---DRLAK 144


>gi|254251337|ref|ZP_04944655.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
 gi|124893946|gb|EAY67826.1| RNA methyltransferase TrmH [Burkholderia dolosa AUO158]
          Length = 156

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHGDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              +        +    ++                 + G+E +GL  +  E         
Sbjct: 64  DAFVAAEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAELLERFPGEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|302185759|ref|ZP_07262432.1| RNA methyltransferase [Pseudomonas syringae pv. syringae 642]
          Length = 254

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|167568630|ref|ZP_02361504.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           oklahomensis C6786]
          Length = 156

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +             ++                 + GAE +GL P+  E         
Sbjct: 64  DAFIAAEAPDPAHMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPELVERFPPEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|312900033|ref|ZP_07759350.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0470]
 gi|311292790|gb|EFQ71346.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0470]
          Length = 168

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      +L
Sbjct: 5   IVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
            D L  +       +  +  + +   +   ND      + G E  GL     +E      
Sbjct: 65  ADFLAHVAGKHLHLV--TKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEKCI 122

Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNH 279
            + M    +++LN+SN AA+ +Y     
Sbjct: 123 RIPMNDEHVRSLNLSNTAALIVYEALRQ 150


>gi|238028709|ref|YP_002912940.1| TrmH family RNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877903|gb|ACR30236.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia glumae
           BGR1]
          Length = 156

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P E A L ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLVEPLGFPLEDAKLRRAGLDYHEYARMHVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L        +    ++         +       + GAE +GL               
Sbjct: 64  EALLAAEQPDPARMFAFTTRGSGRFHDRVFRPGDWFVFGAETRGLGEAMLARFPDEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|222152587|ref|YP_002561762.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
 gi|222113398|emb|CAR41054.1| SpoU rRNA methylase family protein [Streptococcus uberis 0140J]
          Length = 181

 Score = 58.9 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  VVLFEPQIPQNTGNIARTCAATNAPLHIIKPMGFPIDDRKMRRAGLDYWDKLDVRFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D ++K        I   +++    E+    +    + G E KGL     ++       +
Sbjct: 79  DDFVEKCDGK-LHLISKFAETVYSDERFDDGENHYYLFGREDKGLPETFMRKHPEKALRI 137

Query: 255 HMP-GIIKALNVSNAAAVAL--YITQNH 279
            M    +++LN+SN   V +  Y     
Sbjct: 138 PMNDEHVRSLNLSNT--VCMIVYEALRQ 163


>gi|242399001|ref|YP_002994425.1| SpoU protein [Thermococcus sibiricus MM 739]
 gi|242265394|gb|ACS90076.1| SpoU protein [Thermococcus sibiricus MM 739]
          Length = 246

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 59/169 (34%), Gaps = 27/169 (15%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR- 191
           +L ++L     P N+GAI R    F    +I         + +    A  A++ +   + 
Sbjct: 2   KLKVILVEPEYPINLGAIARVMKNFGVTDLILVNPKVSPNNKIARTFAVHAVDILENAKI 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA-----------LILGAEGKGL 240
             +L +AL  +      T GL+     P    I  ++ A           L+ G E +GL
Sbjct: 62  HESLEEALNTV-DLAIGTSGLAGGDYIPERAPISPEEFAKRLSIYDGEIGLVFGRESRGL 120

Query: 241 RPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYITQNHFAK 282
             +  +       +        M       N+S+A AV LY       K
Sbjct: 121 DNEELKKLDFTVTIPTSEEYPIM-------NLSHAVAVILYEVFKQKLK 162


>gi|163801509|ref|ZP_02195408.1| rRNA methylase, putative [Vibrio sp. AND4]
 gi|159174998|gb|EDP59798.1| rRNA methylase, putative [Vibrio sp. AND4]
          Length = 172

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 12/153 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S +++ L +  DP N+GA++R+A  +    +        + +  L        E I  +
Sbjct: 4   QSTVILGLYNPKDPTNVGAVMRAAGCYDATQVRYNGARY-NRAVKLRTDTKNTHERIELV 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + +LT  L        + + +        L      +    I G E   L  +  + A 
Sbjct: 63  EMDDLTAQLT----QDVKVVCVELAVGATALPLFTHPENAVYIFGPEDGSLPQEVVDKAD 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + ++   G +   N++    V LY   +  AK
Sbjct: 119 HVVYIPTNGCM---NLAATVNVVLY---DRLAK 145


>gi|67923340|ref|ZP_00516822.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
 gi|67854812|gb|EAM50089.1| RNA methyltransferase TrmH, group 1 [Crocosphaera watsonii WH 8501]
          Length = 248

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 14/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G++ R         +I  K +              A+  +  +  S +
Sbjct: 11  IVLVEPAGPLNVGSVARVMKNMGLHQLILVKPHCDRLGDEAR---LMAVHGVDVLEQSQV 67

Query: 196 TDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKI----------ALILGAEGKGLRPKT 244
            + + +      + I  +  S   P   E     +          AL+ G E +GL  + 
Sbjct: 68  VETIPEALQGCQRIIATTGRSLSLPTHLETPRGALPWLLAEGLNSALMFGTEDRGLNNEE 127

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            + A     +       +LN++ A AV  Y    
Sbjct: 128 LKYAQRFVSIPANPDYPSLNLAQAVAVCSYELYQ 161


>gi|254247820|ref|ZP_04941141.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
           PC184]
 gi|124872596|gb|EAY64312.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia
           PC184]
          Length = 289

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L +AL  +H     +I L++ +++                 ++    IAL+ G E  GL
Sbjct: 106 TLGEALSGVH----WSIALTARTREYGPPRLAPRAAAAQASAQVGTGDIALVFGNERTGL 161

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 162 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 201


>gi|104780226|ref|YP_606724.1| TrmH family tRNA methyltransferase [Pseudomonas entomophila L48]
 gi|95109213|emb|CAK13910.1| putative tRNA/rRNA methyltransferase, TrmH family, group 1
           [Pseudomonas entomophila L48]
          Length = 251

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 18/156 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIG   R+        ++  +  +   SA  +  ASGA + +  +++ + 
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQPKAFP-SAEASARASGADDLLDNVQVVDT 65

Query: 196 TDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGLR 241
            +  Q +       +G S+                 K +   +  ++IAL+ G E  GL 
Sbjct: 66  LE--QALVGCSL-VMGTSARERSIPWPLIDPRECGAKAVTHAVGGEEIALVFGREHAGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +      H+       +LN++ A  V  Y  +
Sbjct: 123 NEELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 158


>gi|145301039|ref|YP_001143880.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853811|gb|ABO92132.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 154

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R  + 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDYHEFAEVKRWPSY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L  +     +    ++               AL+ G E +GL  +  E+        
Sbjct: 64  EAFLAAVAPE--RVFACTTKGSTAHSAAQFAPGDALLFGPESRGLPLEIIESLPFEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA AV +Y +     
Sbjct: 122 IPMLPQSRSMNLSNAVAVFVYESWRQLG 149


>gi|71032049|ref|XP_765666.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352623|gb|EAN33383.1| hypothetical protein TP01_0139 [Theileria parva]
          Length = 315

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 4/168 (2%)

Query: 25  RNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR--LD 82
           R +   + +      S +    +   + G + +   L +   +   +L T   L    L 
Sbjct: 140 RKNPVLRHIWKLRVSSAYRRGIQKRLVVGSNIIRHILTHTEARFDTILTTNKELIDFVLS 199

Query: 83  WDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLAL-ETAPLLSPTLDAVRNSQLLMVLDHV 141
                     ++ V   T+ +   +   H  L+    A    PT +     + ++ +D++
Sbjct: 200 NPLLNCRYSRIQLVDRYTL-QYCLRGTTHSYLSSDAIADAAIPTPNTNITPRFVVAIDNL 258

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
               NIG+I+R+++AF  D +      +   +  ++    G    IPY
Sbjct: 259 KYARNIGSIIRTSLAFGVDLLFYLNGTTDPFNWKVSSVTGGLQYSIPY 306


>gi|291619429|ref|YP_003522171.1| YibK [Pantoea ananatis LMG 20103]
 gi|291154459|gb|ADD79043.1| YibK [Pantoea ananatis LMG 20103]
 gi|327395751|dbj|BAK13173.1| tRNA/rRNA methyltransferase YibK [Pantoea ananatis AJ13355]
          Length = 157

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E       ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEFTAIKFHADY 63

Query: 196 TDALQKMH-SWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              +        F     G  + S    +         L+ G E +GL  +  +   A  
Sbjct: 64  QAFIATEQPERLFALTTKGTPAHSAVNYQSGDY-----LLFGPESRGLPAEILQALPAAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMAESRSMNLSNAVSVVVYEAWRQL 148


>gi|116617771|ref|YP_818142.1| rRNA methylase (SpoU class) [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096618|gb|ABJ61769.1| Predicted rRNA methylase (SpoU class) [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 170

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+         +        +   + ++     +H+  ++  +L D L  + 
Sbjct: 13  PANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWDHVKLVKHPSLPDFLDTLA 72

Query: 204 SW-GFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMP-G 258
                  +    + D  +P   +   D    + G E  GL     ++       +     
Sbjct: 73  ETDNLYLVSKFANQDYTQPNYAQNDTDNY-FLFGKETTGLPEVFMRQNPEKAIRIPQDDS 131

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN+SN  A+ LY     
Sbjct: 132 HVRSLNLSNTVAIVLYEALRQ 152


>gi|325518166|gb|EGC97941.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 156

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMQVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAH 253
              +        +    ++                 + G+E +GL     E         
Sbjct: 64  DAFVAAESPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLSADVLERFANEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|167624575|ref|YP_001674869.1| tRNA/rRNA methyltransferase SpoU [Shewanella halifaxensis HAW-EB4]
 gi|167354597|gb|ABZ77210.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella halifaxensis
           HAW-EB4]
          Length = 174

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 25/155 (16%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRY--------SPSESAVLAKSASGALEHIPY 189
           L +   P N+G I+R+   +S D +  T +         S   +    +++S     IP 
Sbjct: 11  LVNPKSPTNVGGIMRAVGCYSADAVFYTGKRYELASTNGSAQYNTDTKRASS----SIPL 66

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQET 247
            ++ +L DA+        + + +   +   PL +    +K   I G E  G +  +    
Sbjct: 67  SKVESLLDAI----EPDVKVVCVDLVEGAIPLPEFEHPEKAIYIFGPE-DGTISQQVVNG 121

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A ++ ++   G +   N++ +  V LY   +  AK
Sbjct: 122 ADAVVYVPTVGCM---NLAASVNVLLY---DRLAK 150


>gi|110668383|ref|YP_658194.1| tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM 16790]
 gi|109626130|emb|CAJ52582.1| probable tRNA/rRNA methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 332

 Score = 58.5 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 20/151 (13%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKM 202
           P NIG I R+   F    ++          +     A  A E + P  +  +    + K 
Sbjct: 18  PGNIGTIARAMKNFGLTELLLVDPPPIPAGSEAYGFAGHAREDVLPNAKTVSFDAVVNKY 77

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDK------------IALILGAEGKGLRPKTQETATS 250
           H+ G  T   + DS+  +    K                AL+ G EG GL      +   
Sbjct: 78  HTIG-TTAITAEDSRHHVRFPYKTPAEISDDLKTVETETALVFGREGTGLTNDELTSLDE 136

Query: 251 MAHLHMPGIIKA---LNVSNAAAVALYITQN 278
           +  +      ++   LN+  AA V LY  ++
Sbjct: 137 VCSIP---ANESYPVLNLGQAATVLLYELRS 164


>gi|255974985|ref|ZP_05425571.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|257090801|ref|ZP_05585162.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|307285493|ref|ZP_07565632.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0860]
 gi|312902433|ref|ZP_07761639.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0635]
 gi|255967857|gb|EET98479.1| RNA methyltransferase TrmH [Enterococcus faecalis T2]
 gi|256999613|gb|EEU86133.1| RNA methyltransferase trmH [Enterococcus faecalis CH188]
 gi|306502717|gb|EFM71982.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0860]
 gi|310634103|gb|EFQ17386.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0635]
 gi|315170405|gb|EFU14422.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1342]
 gi|315579156|gb|EFU91347.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0630]
          Length = 168

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      +L
Sbjct: 5   IVLFEPQIPANTGNIARTCAATNAPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
              L  +       +  +  + +   +   ND      + G E  GL     +E      
Sbjct: 65  AAFLAHVAGKHLHLV--TKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEKCI 122

Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNH 279
            + M    +++LN+SN AA+ +Y     
Sbjct: 123 RIPMNDEHVRSLNLSNTAALIVYEALRQ 150


>gi|206559142|ref|YP_002229902.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
 gi|198035179|emb|CAR51053.1| SpoU rRNA methylase family protein [Burkholderia cenocepacia J2315]
          Length = 156

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       N 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRNW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + G+E +GL  +  E         
Sbjct: 64  DAFVASEAPDPARMFAFTTRGSGRFHDRAFLPGDWFVFGSETRGLPAELLERFPNEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|78779450|ref|YP_397562.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712949|gb|ABB50126.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9312]
          Length = 249

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 21/169 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L ++L   N P N+G++ R    F  D +          S    K A    +++ + +
Sbjct: 8   SNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLKAKKMALKGQKYLDHCK 67

Query: 192 I-SNLTDAL-------------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEG 237
           I  NL +A+                    F+    S D    +    K + +A+I G E 
Sbjct: 68  IFDNLENAIFDCDLVIASCGRIDVSKDSVFE---SSEDIVSWILSFEKINNLAIIFGRED 124

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI----TQNHFAK 282
           +GL       A    ++       +LN+S+A ++ LY     ++ +F K
Sbjct: 125 RGLSNNELLLANKTFNIPTSKNNPSLNLSHAVSIVLYELNKSSKRNFNK 173


>gi|308270583|emb|CBX27195.1| hypothetical protein N47_A12240 [uncultured Desulfobacterium sp.]
          Length = 256

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA-SGAL 184
           +  V +  + +V+     P NIG+  R+ +      ++        E+  L K    G  
Sbjct: 1   MQRVNSDNITIVMVRPRFPENIGSSARAMLNMGIRNLVVVS----PENYDLEKIRKLGTH 56

Query: 185 EHIPYIRISNLTDALQK-MHSWGFQTIGLS-------------SDSKKPLEQEIKNDKIA 230
                I    L + L++ + S+ +  +G +             S   + L    +N+KIA
Sbjct: 57  FSSDVIDGIQLFENLKEALASYNY-VVGTTARLGGERAILSTPSGMAERLADLSQNNKIA 115

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++ G+E +GL  +       + ++       +LNVS A  +  Y  
Sbjct: 116 ILFGSEDRGLVNEDIRLCHELINIP-SSDFSSLNVSQAVLLVCYEL 160


>gi|313471787|sp|A2RKW7|TRML_LACLM RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase llmg_1343
 gi|300070939|gb|ADJ60339.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 169

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N G I R+  A +    +            L ++     + +  +   NL D +  + 
Sbjct: 12  HFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLQDFMNSIA 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQ-ETATSMAHLHMP-G 258
             G Q   +S  ++        +D       + G E  GL  +   E       + M   
Sbjct: 72  D-GGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDE 130

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN+SN A + +Y     
Sbjct: 131 HVRSLNLSNCACMIVYEALKQ 151


>gi|125624162|ref|YP_001032645.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492970|emb|CAL97933.1| putative rRNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 196

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
             N G I R+  A +    +            L ++     + +  +   NL D +  + 
Sbjct: 39  HFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLQDFMNSIA 98

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLRPKTQ-ETATSMAHLHMP-G 258
             G Q   +S  ++        +D       + G E  GL  +   E       + M   
Sbjct: 99  D-GGQLYLVSKFAEHVYSDVDYSDDKKDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDE 157

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN+SN A + +Y     
Sbjct: 158 HVRSLNLSNCACMIVYEALKQ 178


>gi|15599012|ref|NP_252506.1| methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|254236721|ref|ZP_04930044.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
 gi|9949991|gb|AAG07204.1|AE004799_10 probable methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|126168652|gb|EAZ54163.1| hypothetical protein PACG_02731 [Pseudomonas aeruginosa C3719]
          Length = 257

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 18/156 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIG   R+        ++  +  S      +A+++ GA + +   R+ + 
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GATDILDAARVVDT 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGKGLR 241
            +  + +       +G S+  ++               LE    N ++AL+ G E  GL 
Sbjct: 66  LE--EALIGCSV-VLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +      H+       +LN++ A  V  Y  +
Sbjct: 123 NEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVR 158


>gi|253681869|ref|ZP_04862666.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
           1873]
 gi|253561581|gb|EES91033.1| RNA methyltransferase TrmH, group 2 [Clostridium botulinum D str.
           1873]
          Length = 160

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 55/153 (35%), Gaps = 3/153 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L +VL     P N G I R+ V  +    +        +   + ++      ++   
Sbjct: 4   TPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFNIDDKSVKRAGLDYWPYLKLE 63

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
              +  D ++K        +  + ++K   ++    + + ++ G E  GL    ++    
Sbjct: 64  IHESFDDMIRKYPDANIY-LSTTKEAKYHHDEVNYKEGVFIVFGRESSGLPDYIRDRYIE 122

Query: 250 SMAHLHM-PGIIKALNVSNAAAVALYITQNHFA 281
           +   + M    +++LN+SN  ++  Y       
Sbjct: 123 NRIRVPMIKTTMRSLNLSNTVSIVAYEALRQLG 155


>gi|237808766|ref|YP_002893206.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
           9187]
 gi|237501027|gb|ACQ93620.1| RNA methyltransferase, TrmH family, group 1 [Tolumonas auensis DSM
           9187]
          Length = 243

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L + +   NIG+  R+        ++      P +    A  A+GA + +     +  
Sbjct: 8   IILVNTSHTGNIGSAARAMKTMGLSQLVLVDPVQPPDEKSTA-LAAGANDILANLRIVPT 66

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK-------------PLEQEIKNDKIALILGAEGKGLR 241
           L +A+          IG S+ S+               L     N  +AL+ G E  GL 
Sbjct: 67  LAEAISDCS----LVIGASARSRTLAWPMLDPRQAGQQLADGALNKTVALVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +      ++       +LNV+ A     Y  +
Sbjct: 123 NEELQQCHYHVNIPANPEYSSLNVAMAVQTLCYEIR 158


>gi|309798987|ref|ZP_07693244.1| possible rRNA/tRNA methylase [Streptococcus infantis SK1302]
 gi|308117391|gb|EFO54810.1| possible rRNA/tRNA methylase [Streptococcus infantis SK1302]
          Length = 108

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 16/121 (13%)

Query: 28  RDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANL 87
           ++ KK+    +K R TS      + G H    A+   + KI ++ A      +L    + 
Sbjct: 3   KNAKKLH--QKKYRKTS----YLIEGWHLFEEAVQAGA-KIEKIFALVEYGDKL---VDY 52

Query: 88  PHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNI 147
           P       V  + +  +   +   QG+            D  +   L   L+ V DP N+
Sbjct: 53  PQTV---FVTEEILLDLADSQ-TPQGIVAIVQKEEDQLPDLSQGKYLF--LEDVQDPGNV 106

Query: 148 G 148
           G
Sbjct: 107 G 107


>gi|56461530|ref|YP_156811.1| rRNA/tRNA methylase [Idiomarina loihiensis L2TR]
 gi|56180540|gb|AAV83262.1| Predicted rRNA/tRNA methylase, SpoU family [Idiomarina loihiensis
           L2TR]
          Length = 154

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A        +        +   + ++    L++     ++  
Sbjct: 4   LVLFEPEIPPNTGNVIRLAANTGMSLHLIEPLGFELDEKKVRRA---GLDYHDLASVNIH 60

Query: 196 TDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS--MA 252
            D    ++S  F +    ++  K             L+ G E +GL  +  ET       
Sbjct: 61  KDWQSFLNSTSFNRIFACTTKGKTNYSAVAYEAGDVLLFGPETRGLPMEVLETFPQENWL 120

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SN+ A+  Y     
Sbjct: 121 RLPMADTSRSLNLSNSVAIFAYEAWRQ 147


>gi|320547370|ref|ZP_08041659.1| RNA methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447966|gb|EFW88720.1| RNA methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 190

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      ++
Sbjct: 28  VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVTFYDSI 87

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
            + ++K           S  ++K    E  ND      + G E KGL     +E      
Sbjct: 88  EEFMEKCDGQVHLI---SKFAEKVYSDENYNDGKYHYFLFGREDKGLPEAFMRENPEKAL 144

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNHFA 281
            + M    +++LN+SN   V +  Y      A
Sbjct: 145 RIPMNDEHVRSLNLSNT--VCMIVYEALRQQA 174


>gi|308177906|ref|YP_003917312.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745369|emb|CBT76341.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 153

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 4/138 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A     +  +        E A L ++     +        +L  A + + 
Sbjct: 12  PGNSGNAIRLAAITGAELHLVKPLGFNFEDANLRRAGLDYHDLAYVTVHEDLDAAFEALG 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
               +    +S+               L+ G E  GL  + ++    T +  L M    +
Sbjct: 72  E--GRVFAFTSEGSTVYSDISYETSDILLFGRESVGLSSEEKKHPRVTDLVRLPMLPGRR 129

Query: 262 ALNVSNAAAVALYITQNH 279
           ++N++N A+V  +     
Sbjct: 130 SMNLANTASVVAFEAWRQ 147


>gi|330950802|gb|EGH51062.1| RNA methyltransferase [Pseudomonas syringae Cit 7]
          Length = 254

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ     ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPMLDPRASGEKVIEQAGDGIEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLSYEVR 158


>gi|70732292|ref|YP_262048.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68346591|gb|AAY94197.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas
           fluorescens Pf-5]
          Length = 257

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIG   R+        ++  +          A+++           ++ L
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPRVFPSHEADARASGATDILENAQVVATL 66

Query: 196 TDALQKMHSWGFQ-TIGLSSDSK--------------KPLEQEIKNDKIALILGAEGKGL 240
            DAL      G     G S+  +              K +E+  +  ++AL+ G E  GL
Sbjct: 67  EDAL-----AGCTLVFGTSARDRRIPWPLLDPRESGLKVVEEAGQGAQVALVFGREDSGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNDELQRCHFHVHIPSDPEFSSLNLATAVQVLAYEVR 158


>gi|298292134|ref|YP_003694073.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
           506]
 gi|296928645|gb|ADH89454.1| RNA methyltransferase, TrmH family, group 1 [Starkeya novella DSM
           506]
          Length = 282

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           ++VL       NIG+ +R+   F    +          +      ASGA   +    +  
Sbjct: 18  VVVLVEPQLGENIGSAVRAMGNFGLSRLRLVNPREGWPNPKAVTFASGADRILENAEVFP 77

Query: 194 NLTDALQKM--------HSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +L  AL  +           G Q   +G  + + + + +    + + L+ G E  GL  +
Sbjct: 78  DLRAALADLNFVAAATARERGMQKTVLGADAVATEAVARIAGGENVGLVFGRERTGLYTE 137

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               A  +  L +     +LN+  A AV  Y 
Sbjct: 138 EVSLADVILTLPVNPAFASLNLGMAVAVVAYE 169


>gi|317052415|ref|YP_004113531.1| tRNA/rRNA methyltransferase SpoU [Desulfurispirillum indicum S5]
 gi|316947499|gb|ADU66975.1| tRNA/rRNA methyltransferase (SpoU) [Desulfurispirillum indicum S5]
          Length = 158

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 5/149 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  V   C   +        ++  L ++     EH+P      L
Sbjct: 4   VVLFEPRIPQNTGNIGRLCVLTGCRLHLIEPLGFSLDARHLRRAGLDYWEHLPLRVHGTL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQETATS-MAH 253
            + L+ ++       G+++ +++P  Q  +    + +I G E  G+              
Sbjct: 64  AEFLEYVNFQKGTLCGITTKARRPYTQIPVDGGPLFVIFGREDTGMTEALHGACGEKRYR 123

Query: 254 LHMPGIIK--ALNVSNAAAVALY-ITQNH 279
           L M       ++N+S++ AV +Y I +  
Sbjct: 124 LPMRECSSCRSMNLSSSVAVVVYDILRRQ 152


>gi|314937991|ref|ZP_07845302.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a04]
 gi|314941583|ref|ZP_07848467.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133C]
 gi|314948431|ref|ZP_07851819.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0082]
 gi|314951380|ref|ZP_07854432.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133A]
 gi|314991309|ref|ZP_07856788.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133B]
 gi|314995352|ref|ZP_07860458.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a01]
 gi|313590445|gb|EFR69290.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a01]
 gi|313594082|gb|EFR72927.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133B]
 gi|313596438|gb|EFR75283.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133A]
 gi|313599603|gb|EFR78446.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133C]
 gi|313642666|gb|EFS07246.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0133a04]
 gi|313645156|gb|EFS09736.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           TX0082]
          Length = 187

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     SNL   L  + 
Sbjct: 32  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSNLEAFLTFLG 91

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
           +     I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 92  NRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKCLRIPMNDEHVR 151

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 152 SLNLSNTAAMIVYEALRQ 169


>gi|258614728|ref|ZP_05712498.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|293553070|ref|ZP_06673712.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1039]
 gi|293568336|ref|ZP_06679659.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1071]
 gi|294621972|ref|ZP_06701117.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           U0317]
 gi|291588945|gb|EFF20770.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1071]
 gi|291598451|gb|EFF29523.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           U0317]
 gi|291602779|gb|EFF32989.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1039]
          Length = 170

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     SNL   L  + 
Sbjct: 15  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSNLEAFLTFLG 74

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
           +     I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 75  NRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKCLRIPMNDEHVR 134

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 135 SLNLSNTAAMIVYEALRQ 152


>gi|257880323|ref|ZP_05659976.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257882177|ref|ZP_05661830.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257885370|ref|ZP_05665023.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257890982|ref|ZP_05670635.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257894237|ref|ZP_05673890.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|260562373|ref|ZP_05832887.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
 gi|257814551|gb|EEV43309.1| RNA methyltransferase TrmH [Enterococcus faecium 1,230,933]
 gi|257817835|gb|EEV45163.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,502]
 gi|257821226|gb|EEV48356.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,501]
 gi|257827342|gb|EEV53968.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,410]
 gi|257830616|gb|EEV57223.1| RNA methyltransferase TrmH [Enterococcus faecium 1,231,408]
 gi|260073297|gb|EEW61638.1| RNA methyltransferase TrmH [Enterococcus faecium C68]
          Length = 168

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     SNL   L  + 
Sbjct: 13  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSNLEAFLTFLG 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
           +     I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 73  NRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKCLRIPMNDEHVR 132

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 133 SLNLSNTAAMIVYEALRQ 150


>gi|69249442|ref|ZP_00604978.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO]
 gi|293559441|ref|ZP_06675979.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1162]
 gi|294616195|ref|ZP_06695992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1636]
 gi|294618817|ref|ZP_06698343.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1679]
 gi|68194153|gb|EAN08686.1| RNA methyltransferase TrmH, group 2 [Enterococcus faecium DO]
 gi|291590950|gb|EFF22662.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1636]
 gi|291594940|gb|EFF26291.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1679]
 gi|291606596|gb|EFF35992.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E1162]
          Length = 167

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     SNL   L  + 
Sbjct: 12  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSNLEAFLTFLG 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
           +     I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 72  NRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKCLRIPMNDEHVR 131

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 132 SLNLSNTAAMIVYEALRQ 149


>gi|317494747|ref|ZP_07953159.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917349|gb|EFV38696.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 157

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     +  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFKLHLIEPLGFTWDDKRLRRAGLDYHEFATLKKHHDY 63

Query: 196 TDALQKMH-SWGFQTI--GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L        F     G  + S    +         L+ G E +GL     +   A  
Sbjct: 64  QAFLDSEQPERLFALTTKGTPAHSAVSYQAGDY-----LVFGPETRGLPAYILDALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQLG 149


>gi|254480252|ref|ZP_05093500.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2148]
 gi|214039814|gb|EEB80473.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2148]
          Length = 250

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIG + R+        +   +     +     ++AS A      +   +L
Sbjct: 8   IVLVNTSHPGNIGGVARAMKNMGLSRLYLVEPRQFPDEQADWRAASAADVLDTAVVTESL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            +A+          +G S+  ++   PL               ++++A++ G E +GL  
Sbjct: 68  EEAIADCQ----FVVGTSARGRRIPWPLLDPRQCAERMALASNDEQVAVLFGREDRGLTN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +      ++       +LN++ A  V  Y  +
Sbjct: 124 DELKLCNLHLNIPTSEDYSSLNLAMAVQVVCYELR 158


>gi|152990479|ref|YP_001356201.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2]
 gi|151422340|dbj|BAF69844.1| tRNA/rRNA methyltransferase [Nitratiruptor sp. SB155-2]
          Length = 156

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 7/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N G I R  V       +            + ++     E +      +L
Sbjct: 4   IVLVHPQIPPNTGNIGRLCVNTGSTLHLVKPLGFDISQKAVKRAGLDYWEKLDLKVWDSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-TSMAHL 254
            + L   +    +    ++ S KP  Q        L  G+E KGL  +  E        +
Sbjct: 64  DELLHNCNLS--RAFFATTKSSKPYFQVQYQPGDFLFFGSETKGLPMELMEKHWEHAVTI 121

Query: 255 HMP--GIIKALNVSNAAAVALYITQNH 279
            M   G   +LN++ +  V +Y     
Sbjct: 122 PMTKEGR--SLNLAVSVGVIVYEGIRQ 146


>gi|323144225|ref|ZP_08078857.1| putative RNA methyltransferase, TrmH family, group 2
           [Succinatimonas hippei YIT 12066]
 gi|322416000|gb|EFY06702.1| putative RNA methyltransferase, TrmH family, group 2
           [Succinatimonas hippei YIT 12066]
          Length = 156

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R +                 +   + ++     E       ++ 
Sbjct: 4   IVLYRPQMPQNAGNIIRLSANCGAKLHFVGPLDFFMDDKKMLRAGLDYHEIANLTVHTSF 63

Query: 196 TDALQKMHSWGF---QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-- 250
              ++ M+          G ++ S    E E       L+ G E  GL  +  +      
Sbjct: 64  EKFMENMNPKRLIASTIHGTATPSDFSFEDEDF-----LLFGRETSGLPDEVMQIIPEKF 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    + LN+SNA AV  Y       
Sbjct: 119 RLRIPMVEKSRCLNLSNAVAVMAYEAWRQLG 149


>gi|309810015|ref|ZP_07703862.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312870678|ref|ZP_07730786.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 3008A-a]
 gi|312874347|ref|ZP_07734378.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2052A-d]
 gi|325911440|ref|ZP_08173852.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 143-D]
 gi|329920512|ref|ZP_08277244.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 1401G]
 gi|308169655|gb|EFO71701.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311090113|gb|EFQ48526.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2052A-d]
 gi|311093789|gb|EFQ52125.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 3008A-a]
 gi|325476790|gb|EGC79944.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 143-D]
 gi|328936188|gb|EGG32641.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           SPIN 1401G]
          Length = 170

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 7/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +VL     P N G I R+      D ++          +   + ++     + +   +  
Sbjct: 5   VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINKHD 62

Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
           +L D L  + +    +     SS S   +E          + G E  GL     +E    
Sbjct: 63  SLEDFLATLQANDEMYLISKFSSKSYTDIEYTDPTKNYYFVFGKETTGLPKTFMREYYER 122

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I+A N++N+ A+ L+     
Sbjct: 123 NLRIPMSDHIRAFNLANSVAIVLFEALRQ 151


>gi|259501039|ref|ZP_05743941.1| RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|302190512|ref|ZP_07266766.1| rRNA methyltransferase [Lactobacillus iners AB-1]
 gi|309804594|ref|ZP_07698659.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 09V1-c]
 gi|259167733|gb|EEW52228.1| RNA methyltransferase [Lactobacillus iners DSM 13335]
 gi|308165986|gb|EFO68204.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 09V1-c]
          Length = 170

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 7/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +VL     P N G I R+      D ++          +   + ++     + +   +  
Sbjct: 5   VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINKHD 62

Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
           +L D L  + +    +     SS S   +E          + G E  GL     +E    
Sbjct: 63  SLEDFLATLQANDEMYLISKFSSKSYTDIEYTDPTKNYYFVFGKETTGLPKTFMREYYER 122

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I+A N++N+ A+ L+     
Sbjct: 123 NLRIPMSDHIRAFNLANSVAIVLFEALRQ 151


>gi|16766980|ref|NP_462595.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167994314|ref|ZP_02575406.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232538|ref|ZP_02657596.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235302|ref|ZP_02660360.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168260552|ref|ZP_02682525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464999|ref|ZP_02698891.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168818477|ref|ZP_02830477.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194442768|ref|YP_002042944.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194471131|ref|ZP_03077115.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734332|ref|YP_002116632.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197261958|ref|ZP_03162032.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200387243|ref|ZP_03213855.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204928821|ref|ZP_03220020.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|238910270|ref|ZP_04654107.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422261|gb|AAL22554.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194401431|gb|ACF61653.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194457495|gb|EDX46334.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194709834|gb|ACF89055.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195632281|gb|EDX50765.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197240213|gb|EDY22833.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197291549|gb|EDY30901.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199604341|gb|EDZ02886.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204322254|gb|EDZ07452.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205327781|gb|EDZ14545.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333200|gb|EDZ19964.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205344663|gb|EDZ31427.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205350496|gb|EDZ37127.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261248843|emb|CBG26696.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995953|gb|ACY90838.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160231|emb|CBW19753.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914721|dbj|BAJ38695.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088113|emb|CBY97875.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226748|gb|EFX51798.1| tRNA cytosine34-2'-O--methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322612864|gb|EFY09816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618929|gb|EFY15816.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625294|gb|EFY22121.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322630039|gb|EFY26812.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634230|gb|EFY30965.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635869|gb|EFY32578.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643045|gb|EFY39621.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643828|gb|EFY40377.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649822|gb|EFY46245.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653028|gb|EFY49363.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661153|gb|EFY57381.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662358|gb|EFY58571.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667236|gb|EFY63402.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674387|gb|EFY70480.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678405|gb|EFY74466.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680911|gb|EFY76945.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687153|gb|EFY83126.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323132055|gb|ADX19485.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192113|gb|EFZ77346.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198204|gb|EFZ83311.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200824|gb|EFZ85894.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206578|gb|EFZ91536.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210509|gb|EFZ95395.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216203|gb|EGA00931.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220426|gb|EGA04880.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225289|gb|EGA09523.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228403|gb|EGA12534.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234224|gb|EGA18312.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237209|gb|EGA21276.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244728|gb|EGA28732.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249209|gb|EGA33127.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250920|gb|EGA34796.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256718|gb|EGA40446.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262256|gb|EGA45817.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264533|gb|EGA48037.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268823|gb|EGA52281.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332990544|gb|AEF09527.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 157

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +        +   T G  + S    +         L+ G E +GL     +      
Sbjct: 64  AAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|121998574|ref|YP_001003361.1| RNA methyltransferase [Halorhodospira halophila SL1]
 gi|121589979|gb|ABM62559.1| RNA methyltransferase, TrmH family, group 1 [Halorhodospira
           halophila SL1]
          Length = 249

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 18/145 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIGA  R+        +                 A+GA + +   R   +
Sbjct: 8   IVLVGTTHPGNIGAAARAMRTMGLRDLYLVDPQCDPGDPEAVARAAGAGDVLERARTAPD 67

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-------------IALILGAEGKGLR 241
           L  AL           GLS+ S+   +  ++                +A + G E  GL 
Sbjct: 68  LATALTGCRLA----FGLSARSRAERQPRLELRPAAESAVAQGGDGDLAWVFGRERTGLT 123

Query: 242 PKTQETATSMAHLHMPGIIKALNVS 266
               +    +  +       +LNV+
Sbjct: 124 NAELDHCHYLVQIPTDPDYSSLNVA 148


>gi|294495306|ref|YP_003541799.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
           mahii DSM 5219]
 gi|292666305|gb|ADE36154.1| RNA methyltransferase, TrmH family, group 1 [Methanohalophilus
           mahii DSM 5219]
          Length = 231

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 19/149 (12%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA---LEHIPYIRISNLTDALQK 201
            N+G++ RS   F  D ++                +  A   LE  P  ++  L +A++ 
Sbjct: 16  GNVGSVTRSMENFGFDDLVLVNPC--KLEGQARAMSCHARDLLESTP--KVDTLEEAIED 71

Query: 202 ----MHSWGFQTIGLSSDSKKPLEQEI--------KNDKIALILGAEGKGLRPKTQETAT 249
               + + G   I      + P              N KIA + G E  G   +  +   
Sbjct: 72  TDIVIGTSGIAGIKTDQHIRMPAYTPAEIRDKFRETNGKIAFLFGREDNGFTREELKRCD 131

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  +        +N+S+AA +A+Y   N
Sbjct: 132 MIMTIPTSEKYPVMNISHAATIAMYEMSN 160


>gi|167945644|ref|ZP_02532718.1| RNA methyltransferase TrmH, group 2 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 87

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNV 265
           +    ++ +++   +       AL+ G E +GL     ++        + M   +++LN+
Sbjct: 7   RLFACTTRARRNYAEAAFEAGDALLFGPETRGLPQALLDSLPEQQQLRIPMRPEVRSLNL 66

Query: 266 SNAAAVALYITQNH 279
           SNA A+ LY     
Sbjct: 67  SNAVALILYEAWRQ 80


>gi|149908845|ref|ZP_01897505.1| RRNA methylase, SpoU family [Moritella sp. PE36]
 gi|149808119|gb|EDM68060.1| RRNA methylase, SpoU family [Moritella sp. PE36]
          Length = 238

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        ++           +  KS + A      +  + +
Sbjct: 7   VVLVGTSHPGNIGSAARAMKTMGFTQLVL----VAPLCEIDEKSVALAAGAADVLENATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRP 242
            D L++  +     IG S+ S+               L +E+ N  +AL+ G E  GL  
Sbjct: 63  VDTLEEAVADCGLVIGTSARSRTLQWPMLDSREAGLKLIEEVPNYPVALVFGRERIGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +  T    +       +LN++ A  +  Y T+
Sbjct: 123 EELQKCTYHVCVAANPEYSSLNLAMAVQILTYETR 157


>gi|330718618|ref|ZP_08313218.1| rRNA methylase (SpoU class) [Leuconostoc fallax KCTC 3537]
          Length = 170

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 7/150 (4%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++ + V  P N G I R+         +        +   + ++     EH+  ++  +
Sbjct: 5   IVLFEPVM-PANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWEHVQLVKHPS 63

Query: 195 LTDALQKMH-SWGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATS 250
           L D L  +  +     +    + D  +P  Q    D    + G E  GL     ++    
Sbjct: 64  LPDFLDTLKPTDHLYLVSKFANQDYSQPDYQATDGDHY-FLFGKETTGLPEVFMRQNPEK 122

Query: 251 MAHLHMPG-IIKALNVSNAAAVALYITQNH 279
              +      I++LN+SN  A+ LY     
Sbjct: 123 AIRIPQDDTHIRSLNLSNTVAIVLYEALRQ 152


>gi|282163400|ref|YP_003355785.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
 gi|282155714|dbj|BAI60802.1| putative RNA methyltransferase [Methanocella paludicola SANAE]
          Length = 235

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 33/154 (21%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G++ RS   F    I+  K       A     AS A + +   RI +  D  + +  
Sbjct: 15  GNVGSVCRSMKNFGFADIVLVKPCRLDNFAKA--MASHAQDLLATARIVDTFD--EALEG 70

Query: 205 WGFQTIGLSSDSKK-------PLEQ--------EIKNDKIALILGAEGKGLRPKTQETAT 249
                                P           E K+   ALI G E  GL  +  E   
Sbjct: 71  ADLLVATTGKPGAHINSHVRYPFYNPKELRTMLEDKSGTAALIFGREDAGLPNEIVERCD 130

Query: 250 SMAHLH-------MPGIIKALNVSNAAAVALYIT 276
            +A++        M       N++ A ++ LY  
Sbjct: 131 IVAYIPTSKDYPIM-------NLAQAVSIFLYEL 157


>gi|145590122|ref|YP_001156719.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048528|gb|ABP35155.1| RNA methyltransferase, TrmH family, group 2 [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 156

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 14/152 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P E A L ++     E        N 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGAKLHLIEPLGFPMEDAKLRRAGLDYHEFASIKVHPNW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
              L+           L++       +         + G+E KG+  + +        + 
Sbjct: 64  GHFLETEKPDPQHLFTLTTKGSGKFHEGKYTPNDYFVFGSETKGITEEVRN------SIP 117

Query: 256 --------MPGIIKALNVSNAAAVALYITQNH 279
                   M    ++LN+SN  A+ +Y     
Sbjct: 118 KMNQMRLAMQDNSRSLNLSNTVAIVVYEAWRQ 149


>gi|26987575|ref|NP_743000.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24982250|gb|AAN66464.1|AE016275_9 RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           KT2440]
          Length = 251

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA--SGALEHIPYIRI- 192
           +VL + + P NIG   R+        ++  +   P E   +  SA  SGA + +   ++ 
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQ---PKEFPAVDASARASGADDVLDNAQVV 63

Query: 193 SNLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +L  AL           +  S  +  IG      K +E     ++IAL+ G E  GL  
Sbjct: 64  DSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGLTN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +      H+       +LN++ A  V  Y  +
Sbjct: 124 EELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 158


>gi|221198388|ref|ZP_03571434.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2M]
 gi|221208935|ref|ZP_03581932.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2]
 gi|221171218|gb|EEE03668.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2]
 gi|221182320|gb|EEE14721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD2M]
          Length = 274

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 90

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L +AL  +      +I L++ +++                 ++++  IAL+ G E  GL
Sbjct: 91  TLGEALSGVQ----WSIALTARTREYGPPRLAPRAAAAHARTQVESGDIALVFGNERTGL 146

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 147 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 186


>gi|325125349|gb|ADY84679.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 185

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        +   L ++       +   R  +L
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLDLIEPLGFRLDDKHLKRAVLDYGGEVEIRRHDDL 64

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L  +  ++  +     SS +   ++   ++     + G E  GL     ++ A    
Sbjct: 65  RAFLATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRETTGLPETFMRQYADRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+A N+SN+AA+ ++     
Sbjct: 125 RIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|107028736|ref|YP_625831.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
           1054]
 gi|116690105|ref|YP_835728.1| RNA methyltransferase [Burkholderia cenocepacia HI2424]
 gi|105897900|gb|ABF80858.1| RNA methyltransferase TrmH, group 1 [Burkholderia cenocepacia AU
           1054]
 gi|116648194|gb|ABK08835.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           cenocepacia HI2424]
          Length = 289

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L +AL  +H     +I L++ +++                 ++    IAL+ G E  GL
Sbjct: 106 TLGEALSGVH----WSIALTARTREYGPPRLAPRAAATQASAQVGTGDIALVFGNERTGL 161

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 162 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 201


>gi|170076970|ref|YP_001733608.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169884639|gb|ACA98352.1| rRNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7002]
          Length = 250

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 14/144 (9%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISNLTDALQKMHS 204
           N+G+I R         +     +           A    E +   + + +LT AL     
Sbjct: 19  NLGSIARVMKNMGLGQLFLVNPHCNHLGQEAFLMAVHGREFLERAVVVPDLTTALTGCKK 78

Query: 205 WGFQTIGL---------SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               T GL         +  +  P   E  +   ALI G E  GL       A  +  + 
Sbjct: 79  A-IATTGLQRSLPMPVETPKAALPWFLED-DQPSALIFGREDHGLSNSELNQAQRLVCIP 136

Query: 256 MPGII-KALNVSNAAAVALYITQN 278
             G    +LN++ A AV  Y  ++
Sbjct: 137 -TGDAYTSLNLAQAVAVCSYELRS 159


>gi|306832003|ref|ZP_07465158.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325978951|ref|YP_004288667.1| TrmH family RNA methyltransferase, group 2 [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|304425929|gb|EFM29046.1| TrmH family RNA methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178879|emb|CBZ48923.1| RNA methyltransferase, TrmH family, group 2 [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 181

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  IVLFQPQIPQNTGNIARTCAATNAPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVTFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
            + ++K           S  + K    E  ND      + G E KGL  +  +       
Sbjct: 79  DEFMEKCDGEVHLI---SKFANKVYSDENYNDGKHHYFLFGREDKGLPEEFMRANPEKAL 135

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNHFA 281
            + M    +++LN+SN   V +  Y      A
Sbjct: 136 RIPMNDEHVRSLNLSNT--VCMIVYEALRQQA 165


>gi|288905984|ref|YP_003431206.1| RNA methyltransferase, TrmH family [Streptococcus gallolyticus
           UCN34]
 gi|288732710|emb|CBI14284.1| putative RNA methyltransferase, TrmH family [Streptococcus
           gallolyticus UCN34]
          Length = 181

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 19  IVLFQPQIPQNTGNIARTCAATNAPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVTFYDSL 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
            + ++K           S  + K    E  ND      + G E KGL  +  +       
Sbjct: 79  DEFMEKCDGEVHLI---SKFANKVYSDENYNDGKHHYFLFGREDKGLPEEFMRANPEKAL 135

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNHFA 281
            + M    +++LN+SN   V +  Y      A
Sbjct: 136 RIPMNDEHVRSLNLSNT--VCMIVYEALRQQA 165


>gi|62182189|ref|YP_218606.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161616772|ref|YP_001590737.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167549059|ref|ZP_02342818.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168241872|ref|ZP_02666804.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194451947|ref|YP_002047725.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|198243676|ref|YP_002217657.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205354702|ref|YP_002228503.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858932|ref|YP_002245583.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585496|ref|YP_002639295.1| tRNA/rRNA methyltransferase YibK [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62129822|gb|AAX67525.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161366136|gb|ABX69904.1| hypothetical protein SPAB_04591 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194410251|gb|ACF70470.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197938192|gb|ACH75525.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205274483|emb|CAR39516.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325796|gb|EDZ13635.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205338875|gb|EDZ25639.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|206710735|emb|CAR35096.1| putative RNA-methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224470024|gb|ACN47854.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322716677|gb|EFZ08248.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|326625441|gb|EGE31786.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629841|gb|EGE36184.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 157

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +        +   T G  + S    +         L+ G E +GL     +      
Sbjct: 64  AAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 149


>gi|300173493|ref|YP_003772659.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887872|emb|CBL91840.1| rRNA methylase [Leuconostoc gasicomitatum LMG 18811]
          Length = 170

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM- 202
           P N G I R+    +    +        +   + ++     EH+  ++ ++L D L  + 
Sbjct: 13  PANTGNIARTTAGTNAILHLIEPLGFDLDDKHVKRAGLDYWEHVKLVKHASLPDFLATLT 72

Query: 203 -HSWGFQTI-GLSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG- 258
                +      + D  +P   +++ D+   + G E  GL     ++       +     
Sbjct: 73  DKDQLYLVSKFANMDYTQPNYMQMQGDQY-FLFGKETTGLPEVFMRQNPEKAIRIPQNDT 131

Query: 259 IIKALNVSNAAAVALYI--TQNHF 280
            I++LN+SN  A+ L+    Q HF
Sbjct: 132 HIRSLNLSNTVAIVLFEALRQQHF 155


>gi|148378220|ref|YP_001252761.1| hypothetical protein CBO0217 [Clostridium botulinum A str. ATCC
           3502]
 gi|153934114|ref|YP_001382621.1| hypothetical protein CLB_0258 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935647|ref|YP_001386173.1| hypothetical protein CLC_0273 [Clostridium botulinum A str. Hall]
 gi|168177550|ref|ZP_02612214.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|170757793|ref|YP_001779848.1| hypothetical protein CLD_0558 [Clostridium botulinum B1 str. Okra]
 gi|170758628|ref|YP_001785548.1| hypothetical protein CLK_3399 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947438|ref|YP_002802529.1| hypothetical protein CLM_0267 [Clostridium botulinum A2 str. Kyoto]
 gi|148287704|emb|CAL81769.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
 gi|152930158|gb|ABS35658.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931561|gb|ABS37060.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
 gi|169123005|gb|ACA46841.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
 gi|169405617|gb|ACA54028.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182671246|gb|EDT83220.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|226841794|gb|ACO84460.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 155

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   L ++     +++      + 
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
            +  +K     F     ++           +D   ++ G E  GL  + ++ +       
Sbjct: 65  EELREKYKDSNF--YFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEIRD-SDPSKCIR 121

Query: 254 LHMPGIIK-ALNVSNAAAVALYITQNHFA 281
           + M      +LN+SN  AV  Y       
Sbjct: 122 VPMINTTTRSLNLSNTVAVVTYEALRQVG 150


>gi|20093957|ref|NP_613804.1| rRNA methylase [Methanopyrus kandleri AV19]
 gi|19886913|gb|AAM01734.1| rRNA methylase [Methanopyrus kandleri AV19]
          Length = 234

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKMH 203
            NIG + R    F    +   +  S     V    A  AL+ +   + ++ L +A++ + 
Sbjct: 14  GNIGHVARVMKNFGVKELFLVRPRS-ELGEVAIARAMHALDLLENAVIVNTLEEAIEDVE 72

Query: 204 SWGFQTIGLSSDSKKP-------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           +    T  L+S   +         E     +KIA++ G E +GLR    E   +  H+  
Sbjct: 73  AAIATTAVLASTPARNPMMPWEVREAFSDYEKIAVVFGPEDRGLRTWEVELCDATLHIPT 132

Query: 257 PGIIKALNVSNAAAVALYITQN 278
               +++N+S++ AV LY  + 
Sbjct: 133 SEEYRSMNLSHSVAVVLYELKK 154


>gi|119494568|ref|ZP_01624706.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
 gi|119452100|gb|EAW33310.1| RNA methyltransferase TrmH, group 1 [Lyngbya sp. PCC 8106]
          Length = 317

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKMHS 204
           N+G++ R         ++        +     + A  A + +    I+  L +AL     
Sbjct: 21  NVGSVARILKNMGLQQLVFVNPQCDPQCEEAQRMAVHAADLLETATITATLPEALTGCQR 80

Query: 205 WGFQTIGLSSDS---KKPLEQ------EIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                I  ++     + PLE        +     ALI G E +GL  +  + A     + 
Sbjct: 81  A----IATTARKRSLETPLEHPRHGLGWLLETPSALIFGPEDRGLSNEELKYAQRFVRIP 136

Query: 256 MPGIIKALNVSNAAAVALYITQNHFA 281
                 ALN++ A AV  Y   +  A
Sbjct: 137 SSSAYPALNLAQAVAVCCYEL-SQLA 161


>gi|156083591|ref|XP_001609279.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154796530|gb|EDO05711.1| conserved hypothetical protein [Babesia bovis]
          Length = 285

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 5/182 (2%)

Query: 12  IFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQL 71
           IF       A   R +   K +      S +    +   +     +   L +       +
Sbjct: 95  IFHPNPLCVATPSRKNAIIKHLWRLRVNSSYRKHQDTRLVTSGDVILHMLRHTDCVFGNI 154

Query: 72  LATKNALARLDW-DANLPHPFP-VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
             T+ +L  L   D++L   F  ++ +    +   +   +       E      P     
Sbjct: 155 FTTRKSLVELILGDSSLRSRFGRIQLLDRHLLRYCLRGTSTTSDSIAEVT---IPNPSIP 211

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            N ++++ LD++  P N+G I+R A+  + DGI   +  +      + +   G    +PY
Sbjct: 212 SNPRVVIALDNIRYPQNVGNIIRIAIGLNVDGIYYLRGTADPFDWKVTQVTGGLQFKLPY 271

Query: 190 IR 191
            R
Sbjct: 272 QR 273


>gi|269955191|ref|YP_003324980.1| tRNA/rRNA methyltransferase SpoU [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303872|gb|ACZ29422.1| tRNA/rRNA methyltransferase (SpoU) [Xylanimonas cellulosilytica DSM
           15894]
          Length = 168

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 4/139 (2%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G+ +R A        +        E + L ++     +        +   A+  +  
Sbjct: 27  GNTGSAIRLAAVTGARLHLVEPLGFDLEESKLRRAGLDYHDLAVLTVHPSFDAAMDAL-- 84

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKA 262
            G +       +              L+ G E  GL P   +    T    L M    ++
Sbjct: 85  PGRRVFAFEVGATTSYTSVAYQPGDVLLFGPEPTGLPPSVLDHPRITERVVLPMLPGRRS 144

Query: 263 LNVSNAAAVALYITQNHFA 281
           LN++NAA++A Y       
Sbjct: 145 LNLTNAASIATYEAWRQLG 163


>gi|256811397|ref|YP_003128766.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           fervens AG86]
 gi|256794597|gb|ACV25266.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           fervens AG86]
          Length = 227

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 32/161 (19%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +     N+G+I R  + F  + +      S   +      A  A E +   +  N 
Sbjct: 4   VVLVNPKYSGNVGSIARVMMNFGFEELRIVGDKS-IINNEAYMMAVHAREILDNAKFYNS 62

Query: 196 TDALQKMHSWGFQTIGLSS--DSKKPLEQEIKN------------DKIALILGAEGKGLR 241
            D  + +    F  I  S      + L++                 KI ++ G E  GLR
Sbjct: 63  FD--EAIKDLDF-VIATSGARGGDRNLKRVPITPKELADKILEVKGKIGIVFGREDDGLR 119

Query: 242 PKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYI 275
            +  +    +  +        M       N+S+A AV LY 
Sbjct: 120 NEDIDKCDLLVSIPTSEKYPIM-------NLSHAVAVILYE 153


>gi|59711260|ref|YP_204036.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
 gi|59479361|gb|AAW85148.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
          Length = 169

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 18/158 (11%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALE 185
           ++ + + + L +   P N+GA++R+A  +  D +  T      +        K AS    
Sbjct: 1   MKKTHVTIGLSNPKSPTNVGAVMRAAGCYQVDDVRYTGERYDRAAKFQTDTKKVAS---- 56

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            IP   ++ L D L +      + + +   +    L Q    DK   + G E   +  + 
Sbjct: 57  KIPLTSVNCLLDDLPE----DMKVVCVELAEGAVSLPQFQHPDKAIYVFGPEDGSITQQV 112

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + A  + ++   G +   N++    V LY   +  AK
Sbjct: 113 ADRADHVVYVPTVGCM---NLAATVNVLLY---DRLAK 144


>gi|289677967|ref|ZP_06498857.1| RNA methyltransferase [Pseudomonas syringae pv. syringae FF5]
          Length = 155

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 20/148 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVGTTHPGNIGGAARAMKNMGLSRLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPMLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNA 268
             +  +      H+       +LN++ A
Sbjct: 122 TNEELQRCHFHVHIPSDPAFSSLNLAAA 149


>gi|282897430|ref|ZP_06305432.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
 gi|281198082|gb|EFA72976.1| RNA methyltransferase TrmH, group 1 [Raphidiopsis brookii D9]
          Length = 245

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 11/141 (7%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           N+G+I R    F    +I         S    + A  A E +   R + NLT AL     
Sbjct: 23  NLGSIARVMKNFGLCDLILVNPQCDPTSLESLRMAVHAPEILETARIVDNLTTALAGC-D 81

Query: 205 WGFQTIGLSSDSKKPLEQE---------IKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
               TIG   + + P+E                  LI G E +GL  +    A  +  + 
Sbjct: 82  RAIATIGRDYNGELPIESPRHALPWLLGESEKPGGLIFGREDRGLTNQEINYAQKLVFIP 141

Query: 256 MPGIIKALNVSNAAAVALYIT 276
                 +LN++ A ++  Y  
Sbjct: 142 TSPEYISLNLATAVSICCYEL 162


>gi|170699309|ref|ZP_02890358.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           IOP40-10]
 gi|170135801|gb|EDT04080.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           IOP40-10]
          Length = 273

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 14/157 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQDDPEAIAMASGADDVLASAHVVP 90

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L DAL           +   +G   +   + +++   Q    D IAL+ G E  GL  +
Sbjct: 91  TLGDALSGVHWSIALTARTREYGPPRLAPRAAAEQACTQVGAGD-IALVFGNERTGLANE 149

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 150 HVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 186


>gi|296394298|ref|YP_003659182.1| tRNA/rRNA methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296181445|gb|ADG98351.1| tRNA/rRNA methyltransferase (SpoU) [Segniliparus rotundus DSM
           44985]
          Length = 154

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 4/137 (2%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G+++R + A  C+  +            L ++     +    +      +AL  +  
Sbjct: 13  GNTGSLIRVSAATGCELHLVEPLGFGLSEPKLRRAGLDYHDLAHVVVHPGFDEALAAVPD 72

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKA 262
              +    +       +         L+ G E  GL  +       +  A + M    ++
Sbjct: 73  A--RIFAFTVAGSTRHDNIAYQAGDVLLFGPEPTGLPAEVAHHPRVSDRARIPMLAGRRS 130

Query: 263 LNVSNAAAVALYITQNH 279
           LN++NAA +A+Y     
Sbjct: 131 LNLANAATIAVYEAWRQ 147


>gi|123440483|ref|YP_001004477.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332159708|ref|YP_004296285.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122087444|emb|CAL10225.1| putative methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318603808|emb|CBY25306.1| tRNA (cytosine34-2'-O-)-methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325663938|gb|ADZ40582.1| putative methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330858932|emb|CBX69294.1| uncharacterized tRNA/rRNA methyltransferase yibK [Yersinia
           enterocolitica W22703]
          Length = 167

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 48/161 (29%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFANIKHHHDY 63

Query: 196 TDALQK-----MHSWG--------FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L         S G          T G  + S    +         L+ G E +GL  
Sbjct: 64  QAFLDSENLDGAQSAGTNPARLFALTTKGTPAHSAVNYQVNDY-----LLFGPETRGLPS 118

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +   A     + M    +++N+SNA +V +Y       
Sbjct: 119 NVLDALPAQQKIRIPMLAASRSMNLSNAVSVVVYEAWRQLG 159


>gi|221133703|ref|ZP_03560008.1| RNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 154

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R +NL
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANSGFALHLIEPLGFEWDDKKVRRAGLDYHEFANVQRHANL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L        +    ++       +        LI G E +GL      +        
Sbjct: 64  DAYLASAKPQ--RIFACTTKGSMFHSKASYAPGDCLIFGPETRGLPHDFILSLPPEQRVR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    +++N+SN+ AV +Y      
Sbjct: 122 IPMLSDSRSMNLSNSVAVFIYEAWRQM 148


>gi|254456096|ref|ZP_05069525.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083098|gb|EDZ60524.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 237

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 14/145 (9%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + +  +L       NIGA  R    F+   +I         +  +  ++ GA   I   +
Sbjct: 4   TNITFILHKPQLSENIGACARGMKNFNFQKLIVIDPKPIFPNDKILATSVGAKNIISKSK 63

Query: 192 I-SNLTDALQKMHSWGFQTIGLSSDSK---------KPLEQEIKNDKIALILGAEGKGLR 241
           +  NL  AL+ +       I  S+  +         + L++     KIA + G+E  GL 
Sbjct: 64  VFDNLEPALKNID----YVIATSARFRNKNIKHIQLEDLKKIDFTKKIAFLFGSEASGLS 119

Query: 242 PKTQETATSMAHLHMPGIIKALNVS 266
                 A     +      K+LN+S
Sbjct: 120 NNEVSYANYTLQIPTNPDFKSLNLS 144


>gi|15839065|ref|NP_299753.1| tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
 gi|9107672|gb|AAF85273.1|AE004055_11 tRNA/rRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 281

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L  VL     P NIGA  R+        ++              + ++GA + +    
Sbjct: 34  PRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAAS 92

Query: 192 ISN-LTDALQKM----------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +   L DA+                 F+ +  ++ + + L       ++AL+ G E  GL
Sbjct: 93  VHTVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGL 152

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 153 TNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 189


>gi|289555644|ref|ZP_06444854.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
 gi|289440276|gb|EFD22769.1| tRNA/rRNA methylase spoU [Mycobacterium tuberculosis KZN 605]
          Length = 158

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 4/129 (3%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +  A  C+  +            L ++     +       ++L  A + +     +    
Sbjct: 25  TCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHASLAHAWEALSPA--RVFAF 82

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSNAAA 270
           ++ +              L+ G E  GL   T      T    + M    ++LN+SNAAA
Sbjct: 83  TAQATTLFTNVGYRAGDVLMFGPEPTGLDEATLADTHITGQVRIPMLAGRRSLNLSNAAA 142

Query: 271 VALYITQNH 279
           VA+Y     
Sbjct: 143 VAVYEAWRQ 151


>gi|301168147|emb|CBW27735.1| putative rRNA methylase [Bacteriovorax marinus SJ]
          Length = 164

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 54/160 (33%), Gaps = 4/160 (2%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L  ++     +VL+    P N G+I R+  A + + I+            + ++    
Sbjct: 3   ANLSLMQKPLFKIVLNAPEIPGNTGSIGRTCAALNLELILIHPLGFDISEKAVRRAGLDY 62

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            + I      +    L+       +    +  +++ + +    +   LI G+E  GL   
Sbjct: 63  WDSIKISEYRDFDHFLESEKPKEEELFFFTKSAEETIFETTITEGSYLIFGSESVGLPKD 122

Query: 244 TQET-ATSMAHLHMPGI-IKALN-VSNAAAVALYITQNHF 280
                +       +    I++LN  S A + A +      
Sbjct: 123 LLAKFSNRQVCFPILNKEIRSLNLASIATS-AAFEGIRQL 161


>gi|209518051|ref|ZP_03266882.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
 gi|209501555|gb|EEA01580.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia sp. H160]
          Length = 276

 Score = 58.1 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 20/157 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIP-YIRIS 193
           VL   + P N+GA  R+        ++      P+          ASGA + +     + 
Sbjct: 25  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVPNVQNDPEAIAMASGADDVLASVHVVP 84

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +H     ++ L++  ++                +E  + +IAL+ G E  GL
Sbjct: 85  TLADALTGVH----WSVALTARLREYGPPQWTPRAAAAVAHEEAVHGEIALVFGNERVGL 140

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  E  +++AH+       +LN+  A  V  Y  +
Sbjct: 141 SNEDVERCSAIAHIPANPAYSSLNLGQAVQVLAYELR 177


>gi|251793795|ref|YP_003008525.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247535192|gb|ACS98438.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 158

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     +    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFADIKKHKTF 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              LQ       +   T G  + S+   E         L+ G E +G+         A  
Sbjct: 64  EAFLQSEQPKRLFALTTKGTPAHSEVTFELGDY-----LMFGPETRGIPMDILNNMPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SN+ AV +Y       
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTIYEAWRQLG 149


>gi|220906581|ref|YP_002481892.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219863192|gb|ACL43531.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7425]
          Length = 262

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 14/157 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL     P NIGAI R         +I              + A  A++ +   R +  
Sbjct: 17  IVLVEPAGPLNIGAISRVLKNMGLRQLILVNPLCDPLGTEARQMAVHAVDLLQQARQVQT 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSK--KPLEQEIKND-------KIALILGAEGKGLRPKTQ 245
           L  AL+       + +  +   +  + + +  +           ALI G E +GL     
Sbjct: 77  LPQALEGCE----RIMATTMREQVGEVVTELPRTGLPWLLGHPAALIFGREDRGLTNTEL 132

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             A  +  +    I  +LN++ A AV  Y      ++
Sbjct: 133 NYAQRLIRIPTDPIYPSLNLAQAVAVCSYELYQQASQ 169


>gi|189220282|ref|YP_001940922.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
           [Methylacidiphilum infernorum V4]
 gi|189187140|gb|ACD84325.1| tRNA (cytosine34-2'-O-)-methyltransferase, SpoU class
           [Methylacidiphilum infernorum V4]
          Length = 161

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 10/157 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + +  L +VL     P N G I R   A   +  +        E A L ++     + + 
Sbjct: 5   MEHQGLGVVLVAPQIPQNTGNIARICAATFSELHLVKPLGFSLEDAALRRAGLDYWKEVR 64

Query: 189 ---YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
              +    + T A  +     F+T G       P           L+ G E KGL  +  
Sbjct: 65  LFLWEGWDHFTAANPRKRLLFFET-GTYP----PYFTASFAPGDMLVFGRETKGLSQRIL 119

Query: 246 ETATSMAH-LHM-PGIIKALNVSNAAAVALYITQNHF 280
             +    + + +  G +++LN++N  ++ LY      
Sbjct: 120 SFSPHFIYSIPILNGKVRSLNLANCVSIVLYEALRQI 156


>gi|182682100|ref|YP_001830260.1| RNA methyltransferase [Xylella fastidiosa M23]
 gi|182632210|gb|ACB92986.1| RNA methyltransferase, TrmH family, group 1 [Xylella fastidiosa
           M23]
 gi|307578367|gb|ADN62336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 263

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L  VL     P NIGA  R+        ++              + ++GA + +    
Sbjct: 16  PRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAAS 74

Query: 192 ISN-LTDALQKM----------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +   L DA+                 F+ +  ++ + + L       ++AL+ G E  GL
Sbjct: 75  VHTVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGL 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 135 TNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 171


>gi|157962405|ref|YP_001502439.1| tRNA/rRNA methyltransferase SpoU [Shewanella pealeana ATCC 700345]
 gi|157847405|gb|ABV87904.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella pealeana ATCC
           700345]
          Length = 174

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 25/155 (16%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRY--------SPSESAVLAKSASGALEHIPY 189
           L +   P N+G I+R+   +S D +  T +         +   +    +++S     IP 
Sbjct: 11  LVNPKSPTNVGGIMRAVGCYSADAVFYTGKRYELAATNGTAQYNTDTKRASS----SIPL 66

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQET 247
            ++ +L DA+        + + +   +   PL +    DK   I G E  G +  +    
Sbjct: 67  KKVESLLDAI----EPDVKVVCVDLVEGAIPLPEFEHPDKAIYIFGPE-DGTISQQVING 121

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A ++ ++   G +   N++ +  V LY   +  AK
Sbjct: 122 ADAVVYVPTVGCM---NLAASVNVLLY---DRLAK 150


>gi|261209252|ref|ZP_05923644.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289566001|ref|ZP_06446439.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           D344SRF]
 gi|260076798|gb|EEW64533.1| RNA methyltransferase TrmH [Enterococcus faecium TC 6]
 gi|289162199|gb|EFD10061.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           D344SRF]
          Length = 168

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     SNL   L  + 
Sbjct: 13  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSNLEAFLTFLG 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
           +     I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 73  NRKLHLISKFAHKVYSDENFADGEEHFFLFGKETTGLPETFMRENEEKCLRIPMNDEHVR 132

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y +   
Sbjct: 133 SLNLSNTAAMIVYESLRQ 150


>gi|285019836|ref|YP_003377547.1| tRNA/rrna methyltransferase , spou class protein [Xanthomonas
           albilineans GPE PC73]
 gi|283475054|emb|CBA17553.1| putative trna/rrna methyltransferase , spou class protein
           [Xanthomonas albilineans]
          Length = 159

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 4/153 (2%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L ++L     P N G ++R          +            L ++     E+    
Sbjct: 4   TPTLHVLLFQPEIPPNTGNVIRLCANTGAQLHLIEPLGFDLSDRQLKRAGLDYHEYAQLQ 63

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-- 248
             ++L  ALQ +     +   LS+      +     D  A + G E +GL P+  E    
Sbjct: 64  VHASLDAALQTLAPQ--RLFALSTRGCARYDAAAFADGDAFLFGPETRGLPPEVLEAIPP 121

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                L M    ++LN+SNA AV ++       
Sbjct: 122 AQRLRLPMRPDNRSLNLSNAVAVVVFEAWRQLG 154


>gi|161505771|ref|YP_001572883.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867118|gb|ABX23741.1| hypothetical protein SARI_03947 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 157

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--S 250
              +        +   T G  + S    +         L+ G E +GL     +  +   
Sbjct: 64  AAFVAAENPQRLFALTTKGTPAHSAVSYQNGDY-----LMFGPETRGLPASILDALSKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMMPNSRSMNLSNAVSVVVYEAWRQLG 149


>gi|71276243|ref|ZP_00652522.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
 gi|71900996|ref|ZP_00683108.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|170730741|ref|YP_001776174.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
 gi|71163004|gb|EAO12727.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Dixon]
 gi|71729247|gb|EAO31366.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|167965534|gb|ACA12544.1| tRNA/rRNA methyltransferase [Xylella fastidiosa M12]
          Length = 263

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 20/161 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L  VL     P NIGA  R+        ++              + ++GA + +    
Sbjct: 16  PRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAAS 74

Query: 192 ISN-LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--------------DKIALILGAE 236
           +   L DA+          +G ++ +++   +E++                ++AL+ G E
Sbjct: 75  VHTVLADAVADCT----FVLGCTARARRVAFEELRPAAAASQILANINAAGEVALLFGRE 130

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             GL  +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 131 RTGLTNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 171


>gi|254468187|ref|ZP_05081593.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13]
 gi|207086997|gb|EDZ64280.1| SpoU class tRNA/rRNA methylase [beta proteobacterium KB13]
          Length = 154

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R     +C   +            L ++    ++H  ++   N 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCSNSNCKLHLVKPLGFELSEKTLRRAGLDYIKHELFVIYENY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
           +D L    +      G+S+  K              + G E +GL    +       +  
Sbjct: 64  SDFLS--KNKNINLFGISTKGKNYYHSVSFKPDDFFMFGPETRGLPDAIRNQIEPNHLLR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHF 280
           + M    +++N++N  ++ LY    QN+F
Sbjct: 122 VPMAENSRSINLANTVSIILYEAWRQNNF 150


>gi|328712534|ref|XP_003244835.1| PREDICTED: hypothetical protein LOC100569722 [Acyrthosiphon pisum]
          Length = 140

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 218 KPLEQEIKND--KIALILGAEGKGLRPK----TQETATSMAHLHMPGIIKALNVSNAAAV 271
            P  +        + LI+G E  GL  +     +       ++ +   I++LN + A  +
Sbjct: 55  APYYEIDYCKITPLILIIGGETHGLSDEGYEFARSRKGIRLNIPLENGIESLNSATAVGI 114

Query: 272 ALYITQNHF 280
             +  +   
Sbjct: 115 LCFEAKKQM 123


>gi|134297042|ref|YP_001120777.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134140199|gb|ABO55942.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           vietnamiensis G4]
          Length = 156

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              +        +    ++                 + G+E +GL  +  E         
Sbjct: 64  DAFVAAESPDPTRMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPAELLERFPGEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|293571560|ref|ZP_06682582.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E980]
 gi|291608366|gb|EFF37666.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           E980]
          Length = 170

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     S+L   L  + 
Sbjct: 15  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSDLEAFLAFLG 74

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
                 I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 75  DRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKCLRIPMNDEHVR 134

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 135 SLNLSNTAAMIVYEALRQ 152


>gi|152984133|ref|YP_001346680.1| putative methyltransferase [Pseudomonas aeruginosa PA7]
 gi|150959291|gb|ABR81316.1| probable methyltransferase [Pseudomonas aeruginosa PA7]
          Length = 308

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 25/170 (14%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           S  LD +R     +VL + + P NIG   R+        ++  +  S      +A+++ G
Sbjct: 50  SALLDRIR-----VVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-G 103

Query: 183 ALEHIPYIRI-SNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKND 227
           A + +   R+  +L +AL          +G S+               +   LE    N 
Sbjct: 104 ATDILDAARVVDSLEEALVGCS----VVLGTSARDRRIPWPLLDPRECAATCLEHLEANG 159

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + AL+ G E  GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 160 EAALVFGREYAGLTNEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVR 209


>gi|221214723|ref|ZP_03587692.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD1]
 gi|221165262|gb|EED97739.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans CGD1]
          Length = 274

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    + S
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVVS 90

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +H     +I L++ +++                 ++++  IAL+ G E  GL
Sbjct: 91  TLGDALSGVH----WSIALTARTREYGPPRLAPRAAAAHACTQVESGDIALVFGNERTGL 146

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 147 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 186


>gi|170733439|ref|YP_001765386.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|169816681|gb|ACA91264.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           cenocepacia MC0-3]
          Length = 289

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L +AL  +H     +I L++ +++                 ++    IAL+ G E  GL
Sbjct: 106 TLGEALSGVH----WSIALTARTREYGPPRLAPRAAAAQASAQVGAGDIALVFGNERTGL 161

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 162 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 201


>gi|330965901|gb|EGH66161.1| RNA methyltransferase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 257

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++         S      ASGA + +   ++ + 
Sbjct: 7   VVLVCTTHPGNIGGAARAMKNMGLARLVLVDPRIFP-SPDADARASGATDILEGAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L +AL          +G S+                +K +EQ  +  ++AL+ G E  GL
Sbjct: 66  LEEALVGCR----LVLGTSARDRSLPWPLLDPRASGEKVIEQAGEGAEVALVFGREHAGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN++ A  V  Y  +
Sbjct: 122 TNEELQRCHFHVHIPSDPTFSSLNLAAAVQVLSYEVR 158


>gi|262201698|ref|YP_003272906.1| tRNA/rRNA methyltransferase SpoU [Gordonia bronchialis DSM 43247]
 gi|262085045|gb|ACY21013.1| tRNA/rRNA methyltransferase (SpoU) [Gordonia bronchialis DSM 43247]
          Length = 154

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R A    C+  +          A + ++     E        NL  A   + 
Sbjct: 12  PPNTGNAIRLAANTGCELHLIEPLGFSMSDAQVKRAGLDYHEMATVTVHPNLVTAWTTLK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ---ETATSMAHLHMPGII 260
               +    ++ +++            L+ G E  GL        E       + M    
Sbjct: 72  PE--RVFAFTAHAERFHTDVDYAPGDVLLFGPEPTGLPDDVLAEPEITD-RVRIPMLAGR 128

Query: 261 KALNVSNAAAVALYITQNH 279
           ++ N++NAA++A+Y     
Sbjct: 129 RSHNLANAASIAVYEAWRQ 147


>gi|71083833|ref|YP_266553.1| SpoU rRNA methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062946|gb|AAZ21949.1| SpoU rRNA Methylase family [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 237

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 12/139 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L       NIGA  R+   F+   ++  K      +  +  ++ GA      I  + + 
Sbjct: 9   ILHQPQLSENIGACARAVKNFNFKKLVIVKPKPIFPNDKILATSVGAK---DLIINAKVH 65

Query: 197 DALQKMHSWGFQTIGLSSDSK---------KPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           + L+         +  S+  +           L++   N KIA + G+E  GL       
Sbjct: 66  ETLESAVKKVDYVVATSARFRNKNIKHINLDDLKKIDFNKKIAFLFGSEASGLSNNEISY 125

Query: 248 ATSMAHLHMPGIIKALNVS 266
           A     +      K+LN+S
Sbjct: 126 ANYTMQIPTNPDFKSLNLS 144


>gi|24380081|ref|NP_722036.1| putative rRNA methylase [Streptococcus mutans UA159]
 gi|24378075|gb|AAN59342.1|AE014999_10 putative rRNA methylase [Streptococcus mutans UA159]
          Length = 182

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 20  VVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D +          I   ++     E    ++    + G E KGL  +  ++ +     +
Sbjct: 80  NDFMNICSGK-LHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRI 138

Query: 255 HMPG-IIKALNVSNAAAVAL--YITQNH 279
            M    +++LN+SN   V +  Y     
Sbjct: 139 PMNDQHVRSLNLSNT--VCMIVYEALRQ 164


>gi|153938142|ref|YP_001389580.1| hypothetical protein CLI_0282 [Clostridium botulinum F str.
           Langeland]
 gi|152934038|gb|ABS39536.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           F str. Langeland]
 gi|295317676|gb|ADF98053.1| RNA methyltransferase, TrmH family, group 2 [Clostridium botulinum
           F str. 230613]
          Length = 155

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 6/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   L ++     +++      + 
Sbjct: 5   IVLFQPEIPQNTGNIARTCVLTNSRLHLIKPLGFSLDEKHLRRAGLDYWQYLDLSIYESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAH 253
            +  +K     F     ++           +D   ++ G E  GL  + ++ +       
Sbjct: 65  EELREKYKDSNF--YFSTTHGNNFYTDVKYSDGDFIVFGRESSGLPDEIKD-SDPSKCIR 121

Query: 254 LHMPGIIK-ALNVSNAAAVALYITQNHFA 281
           + M      +LN+SN  AV  Y       
Sbjct: 122 VPMINTTTRSLNLSNTVAVVTYEALRQVG 150


>gi|113477325|ref|YP_723386.1| RNA methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110168373|gb|ABG52913.1| RNA methyltransferase, TrmH family, group 1 [Trichodesmium
           erythraeum IMS101]
          Length = 248

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 25/170 (14%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + ++Q+ +VL     P N+G++ R       + ++          A   + A   +E + 
Sbjct: 4   LESTQIRIVLVEAKGPLNVGSVARIMKNMGLNHLVLVNPQCDPYGAEARQMAVHGVEILE 63

Query: 189 YIR-ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------ALILGAEGKG 239
               +  L +AL+  H         S D   P   E     +        ALI G E +G
Sbjct: 64  KATIVPTLPEALKGCHRA---IATTSLDRSLPTHLENPKHSLPWLLGYSGALIFGREDRG 120

Query: 240 LRPKTQETATSMAHL------HMPGIIKALNVSNAAAVALYIT-QNHFAK 282
           L       A     +             +LN++ A A+  Y   Q    +
Sbjct: 121 LTNVELNYAQRFVRIQSDDSYP------SLNLAQAVAICCYELYQAQLNQ 164


>gi|145225467|ref|YP_001136145.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
 gi|145217953|gb|ABP47357.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium gilvum PYR-GCK]
          Length = 154

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R      C   +            L ++     +       ++L  A   +   
Sbjct: 14  NTGNAIRMVAGTGCALHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHADLGAAWSVLMPA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +              L+ G E  GL   T      T    + M    ++L
Sbjct: 74  --RVFAFTAHAATSFAGVGYEPGDVLMFGPEPTGLDEATLADPHITGQVRIPMLSGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAVA+Y     
Sbjct: 132 NLSNAAAVAVYEAWRQ 147


>gi|78066859|ref|YP_369628.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
 gi|77967604|gb|ABB08984.1| RNA methyltransferase TrmH, group 1 [Burkholderia sp. 383]
          Length = 289

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGL 240
            L DAL  +H     +I L++ +++                 ++    IAL+ G E  GL
Sbjct: 106 TLGDALSGVH----WSIALTARTREYGPPRLAPRAAATQACAQVGTGDIALVFGNERTGL 161

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 162 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 201


>gi|227432354|ref|ZP_03914346.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351875|gb|EEJ42109.1| SpoU family RNA methyltransferase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 170

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+         +        +   + ++     +H+  ++   L D L  + 
Sbjct: 13  PANTGNIARTTAGTDAVLHLIEPLGFELDDKHVKRAGLDYWDHVKLVKHPGLPDFLDTLA 72

Query: 204 SW-GFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMP-G 258
                  +    + D  +P   +   D    + G E  GL     ++       +     
Sbjct: 73  ETDNLYLVSKFANQDYTQPNYAQNDTDNY-FLFGKETTGLPEVFMRQNPEKAIRIPQDDS 131

Query: 259 IIKALNVSNAAAVALYITQNH 279
            +++LN+SN  A+ LY     
Sbjct: 132 HVRSLNLSNTVAIVLYEALRQ 152


>gi|28199373|ref|NP_779687.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|28057479|gb|AAO29336.1| tRNA/rRNA methyltransferase [Xylella fastidiosa Temecula1]
          Length = 252

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L  VL     P NIGA  R+        ++              + ++GA + +    
Sbjct: 5   PRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAAS 63

Query: 192 ISN-LTDALQKM----------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +   L DA+                 F+ +  ++ + + L       ++AL+ G E  GL
Sbjct: 64  VHTVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILTNINAAGEVALLFGRERTGL 123

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 124 TNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 160


>gi|118444087|ref|YP_877482.1| RNA methyltransferase [Clostridium novyi NT]
 gi|118134543|gb|ABK61587.1| RNA methyltransferase, TrmH family, group 2 [Clostridium novyi NT]
          Length = 160

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 3/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L +VL     P N G I R+ V  +    +        +   L ++      H+ 
Sbjct: 2   LDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFRIDDKSLKRAGLDYWPHLD 61

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247
                +  D ++K        +  + ++K   ++        ++ G E  GL    ++  
Sbjct: 62  VEVHESFDDMIKKYPDANIY-LSTTKEAKYHHDEVKYKTGDFIVFGRESSGLPEYIRDRY 120

Query: 248 ATSMAHLHMPGIIK-ALNVSNAAAVALYITQNHFA 281
             +   + M      +LN+SN  ++  Y       
Sbjct: 121 VENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQLG 155


>gi|107103337|ref|ZP_01367255.1| hypothetical protein PaerPA_01004406 [Pseudomonas aeruginosa PACS2]
          Length = 251

 Score = 57.7 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 18/156 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           MVL + + P NIG   R+        ++  +  S      +A+++ GA + +   R+ + 
Sbjct: 1   MVLVNTSHPGNIGGAARAMKNMGLSQLVLVQPESFPHGDAVARAS-GATDILDAARVVDT 59

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGKGLR 241
            +  + +       +G S+  ++               LE    N ++AL+ G E  GL 
Sbjct: 60  LE--EALIGCSV-VLGTSARDRRIPWPLLDPRECATTCLEHLEANGEVALVFGREYAGLT 116

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +      H+       +LN++ A  V  Y  +
Sbjct: 117 NEELQRCQFHVHIPSDPEFGSLNLAAAVQVLTYEVR 152


>gi|161524370|ref|YP_001579382.1| RNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|160341799|gb|ABX14885.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           multivorans ATCC 17616]
          Length = 289

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    + S
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVVS 105

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L +AL  +H     +I L++ +++                 ++++  IAL+ G E  GL
Sbjct: 106 TLGEALSGVH----WSIALTARTREYGPPRLAPRAAAAHACTQVESGDIALVFGNERTGL 161

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 162 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 201


>gi|219847182|ref|YP_002461615.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
 gi|219541441|gb|ACL23179.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
           9485]
          Length = 235

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 26/164 (15%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR- 191
            ++++L    DP NIGA++R+ +      +   +   P     L   A+ A    P +  
Sbjct: 3   GIVVILHRPQDPRNIGAVVRAMLNTGFQRLRLVEP--PPFDPDLI--AAVAHRPDPVLTR 58

Query: 192 ---ISNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILG 234
               S+L DA   +       +G S                + +   +      +AL+ G
Sbjct: 59  LTIHSDLADATADIR----YLVGTSDRPHLNLPWRNDVRQWAVELHRRATVAGPVALLFG 114

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            E  GL  +       +  L +      LN++ A  + LY  Q 
Sbjct: 115 PEDNGLSREELSRCHEIIGLPINPAYPTLNLAQAVLLILYELQQ 158


>gi|71898718|ref|ZP_00680887.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
 gi|71731483|gb|EAO33545.1| RNA methyltransferase TrmH, group 1 [Xylella fastidiosa Ann-1]
          Length = 263

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +L  VL     P NIGA  R+        ++              + ++GA + +    
Sbjct: 16  PRLRFVLVGTQHPGNIGAAARAMKTMGISRLVLVAPEC-QLDEHAYRRSAGAEDVLEAAS 74

Query: 192 ISN-LTDALQKM----------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGL 240
           +   L DA+                 F+ +  ++ + + L       ++AL+ G E  GL
Sbjct: 75  VHTVLADAVADCTFVLGCTARTRRVAFEELRPAAAASQILANINAAGEVALLFGRERTGL 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+    +  +LN++ A  +  Y  +
Sbjct: 135 TNEELQLCHVAVHIPADPLFSSLNLAAAVQILAYEIR 171


>gi|167031897|ref|YP_001667128.1| RNA methyltransferase [Pseudomonas putida GB-1]
 gi|166858385|gb|ABY96792.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           GB-1]
          Length = 251

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA--SGALEHIPYI-RI 192
           +VL + + P NIG   R+        ++  +   P E   +  SA  SGA + +     +
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQ---PKEFPAVDASARASGADDVLDNALVV 63

Query: 193 SNLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +L  AL           +  S  +  IG      K +E     ++IAL+ G E  GL  
Sbjct: 64  DSLEQALVGCNLVMGTSARERSIPWPLIGPRECGAKAVEHANGGEEIALVFGREHAGLTN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +      H+       +LN++ A  V  Y  +
Sbjct: 124 EELQRCHFHVHIPSNPDFSSLNLAAAVQVLSYEVR 158


>gi|254447561|ref|ZP_05061027.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           HTCC5015]
 gi|198262904|gb|EDY87183.1| RNA methyltransferase, TrmH family, group 2 [gamma proteobacterium
           HTCC5015]
          Length = 159

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 9/143 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM- 202
           P N G I+R          +        +   L ++     E        +     +   
Sbjct: 12  PPNTGNIIRLCANTGFQLHLIHPLGFELDDKRLRRAGLDYHEFASVREHESWEAFCRDFV 71

Query: 203 --HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT----SMAHLHM 256
                  +   LS+  ++        +    + G E +GL     +           L M
Sbjct: 72  QGGDANHRLFALSTRGRQRYSDVAFREGDVFLFGPETRGLPQDILD--DLPEAQRLRLPM 129

Query: 257 PGIIKALNVSNAAAVALYITQNH 279
               ++LN+SN  AV  Y     
Sbjct: 130 RASGRSLNLSNTVAVLGYEAWRQ 152


>gi|147771037|emb|CAN62490.1| hypothetical protein VITISV_035537 [Vitis vinifera]
          Length = 205

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 46/166 (27%)

Query: 124 PTLDAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
             +  + N++LL +VL     P N G I R+  A +    +  +     E  +LA +  G
Sbjct: 53  ERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEEG----EKRLLAFTKRG 108

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              H  +                                +        LI G+E  GL P
Sbjct: 109 TNIHSDF-----------------------------SYRKGDW-----LIFGSETCGLPP 134

Query: 243 KTQETATS------MAHLHMPGI-IKALNVSNAAAVALYITQNHFA 281
           +      S         + M    ++ LN+S +  +ALY       
Sbjct: 135 EALLDCKSEALGGGTIQIPMVETYVRCLNLSVSVGIALYEASRQLN 180


>gi|325526741|gb|EGD04257.1| RNA methyltransferase [Burkholderia sp. TJI49]
          Length = 290

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 46  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 105

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGL 240
            L +AL  +H     +I L++ +++                 ++    IAL+ G E  GL
Sbjct: 106 TLGEALSGVH----WSIALTARAREYGPPRLAPRAAAGQACAQVGTGDIALVFGNERTGL 161

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 162 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 201


>gi|237806923|ref|YP_002891363.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM
           9187]
 gi|237499184|gb|ACQ91777.1| RNA methyltransferase, TrmH family, group 2 [Tolumonas auensis DSM
           9187]
          Length = 154

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 4/140 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        +   L ++     E     R +N  + L  + 
Sbjct: 12  PPNTGNIIRLCANTGYFLHLIEPMGFAWDDKRLRRAGLDYHEFAEIKRHANFENFLSTIG 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT--SMAHLHMPGIIK 261
           +   +    ++  K    +        L+ G E +GL     E+        + M    +
Sbjct: 72  NA--RIFACTTKGKAYPSEAGFIAGDVLLFGPETRGLPMSIIESLPEAQRLRIPMLPQSR 129

Query: 262 ALNVSNAAAVALYITQNHFA 281
           ++N+SNA +V +Y +     
Sbjct: 130 SMNLSNAVSVFVYESWRQLG 149


>gi|303244844|ref|ZP_07331172.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
           okinawensis IH1]
 gi|302484794|gb|EFL47730.1| RNA methyltransferase, TrmH family, group 1 [Methanothermococcus
           okinawensis IH1]
          Length = 231

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 34/166 (20%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR- 191
           +++++L +     N+GAI R+ + F  + +          +      A  A E +   + 
Sbjct: 2   KVIVILVNPKYSGNVGAIARNMMNFGVNELRIVGSK-DILNDEAYIRAVHAKEILNNAKF 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQE------------IKNDKIALILGAEG 237
             NL DA Q +       +G S      + L++             I +  + ++ G E 
Sbjct: 61  YDNLNDATQDID----FIVGTSGAVSGDRNLKRVPITPHELAEKYKIVDGTMGIVFGRED 116

Query: 238 KGLRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
            GL  K  E       +        M       N+S+A ++ LY  
Sbjct: 117 DGLSNKELELCDLFVSIPTSEKYPIM-------NLSHAVSIILYEL 155


>gi|258404596|ref|YP_003197338.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
 gi|257796823|gb|ACV67760.1| tRNA/rRNA methyltransferase (SpoU) [Desulfohalobium retbaense DSM
           5692]
          Length = 256

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 19/157 (12%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           L +VL       N+G+  R+     C  + +        E A    +  G          
Sbjct: 11  LTVVLFQPKFAENVGSTARACANLGCPNLKLVQPPAWDLERAAPLATGRGKEVLHSLTLH 70

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--------------LILGAEGK 238
            +L  AL   H       G ++ +    +     +++A              ++ G E +
Sbjct: 71  PDLPSALSPHH----TVYGTTARTGGWRKAIRTPEQVAEDVAGKLAAGHQVAVVFGPEDR 126

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           GL  +  +    +  +       +LN+S A  + LY 
Sbjct: 127 GLSNEEIDICGQLLTIPTASEATSLNLSQAVLLVLYE 163


>gi|49475602|ref|YP_033643.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238409|emb|CAF27636.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 278

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           +++L     P NIG + R+   F    +   K      +     +AS A   I   +   
Sbjct: 16  IIILVEPQLPENIGMVARAMANFGLSKLRLVKPREEFPNEKARAAASKADHVINDAVIFD 75

Query: 194 NLTDALQKMH---------SWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243
            L DA+  +H           GF+T+  + ++   L Q E    +  ++ G E  GL   
Sbjct: 76  TLRDAIADLHYVFATTARERCGFKTVKSAVEAAIILRQRENIKQRTGIVFGRERWGLEND 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  +    +     +LN++ A  V L
Sbjct: 136 EISLVDEIITFPVNPAFASLNIAQA--VLL 163


>gi|309803077|ref|ZP_07697176.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 11V1-d]
 gi|309806996|ref|ZP_07700978.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 03V1-b]
 gi|312872567|ref|ZP_07732635.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312875010|ref|ZP_07735029.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2053A-b]
 gi|315653901|ref|ZP_07906817.1| RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325913153|ref|ZP_08175523.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 60-B]
 gi|308164858|gb|EFO67106.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166616|gb|EFO68813.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LactinV 03V1-b]
 gi|311089755|gb|EFQ48180.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2053A-b]
 gi|311091929|gb|EFQ50305.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|315488597|gb|EFU78243.1| RNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|325477574|gb|EGC80716.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus iners
           UPII 60-B]
          Length = 170

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 7/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +VL     P N G I R+      D ++          +   + ++     + +   +  
Sbjct: 5   VVLYEPLMPANTGNIARTCA--GTDTVLDLIEPLGFSLDDKHMKRAGLDYWDKVKINKHD 62

Query: 194 NLTDALQKMHSWG--FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATS 250
           +L D L  + S    +     SS S   +E          + G E  GL     +E    
Sbjct: 63  SLEDFLATLQSNDEMYLISKFSSKSYTDVEYTDPTKNYYFVFGKETTGLPKTFMREYYER 122

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M   I+A N++N+ A+ L+     
Sbjct: 123 NLRIPMSDHIRAFNLANSVAIVLFEALRQ 151


>gi|269123755|ref|YP_003306332.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
 gi|268315081|gb|ACZ01455.1| tRNA/rRNA methyltransferase (SpoU) [Streptobacillus moniliformis
           DSM 12112]
          Length = 172

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 7/147 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I RS V  +    +            + ++     +++      + 
Sbjct: 3   IVLYQPEMPYNTGNIGRSCVITNTTLHLIKPLGFEISDKHIKRTGLDYWKYVDLKIWESF 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATSMAHL 254
            D ++     G +    ++ + +        +   ++ G E +GL  +           +
Sbjct: 63  EDFMEN-KGSG-KIYFATTKTDRKYSDVQFEEDDYIMFGPESRGLPEEILNRYKEQNITI 120

Query: 255 HMP--GIIKALNVSNAAAVALYITQNH 279
            M   G   +LN+SN+A + LY     
Sbjct: 121 PMLKIGR--SLNLSNSAVIILYEALRQ 145


>gi|293379119|ref|ZP_06625270.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           PC4.1]
 gi|292642260|gb|EFF60419.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecium
           PC4.1]
          Length = 167

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     S+L   L  + 
Sbjct: 12  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSDLEAFLTFLG 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
                 I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 72  DRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKCLRIPMNDEHVR 131

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 132 SLNLSNTAAMIVYEALRQ 149


>gi|257888171|ref|ZP_05667824.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257896938|ref|ZP_05676591.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
 gi|257824225|gb|EEV51157.1| RNA methyltransferase TrmH [Enterococcus faecium 1,141,733]
 gi|257833503|gb|EEV59924.1| RNA methyltransferase TrmH [Enterococcus faecium Com12]
          Length = 168

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     S+L   L  + 
Sbjct: 13  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSDLEAFLTFLG 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
                 I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 73  DRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKCLRIPMNDEHVR 132

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 133 SLNLSNTAAMIVYEALRQ 150


>gi|227552600|ref|ZP_03982649.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
 gi|227178226|gb|EEI59198.1| SpoU family RNA methyltransferase [Enterococcus faecium TX1330]
          Length = 187

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     S+L   L  + 
Sbjct: 32  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSDLEAFLTFLG 91

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
                 I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 92  DRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKCLRIPMNDEHVR 151

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 152 SLNLSNTAAMIVYEALRQ 169


>gi|169334368|ref|ZP_02861561.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259085|gb|EDS73051.1| hypothetical protein ANASTE_00767 [Anaerofustis stercorihominis DSM
           17244]
          Length = 155

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 5/147 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I+R+         +        +   L ++     +        N 
Sbjct: 4   IVLFNPEIPQNTGNIVRTCAVTDTKLHLIKPLGFSIKDKYLKRAGLDYWDEATISVYENF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSMAHL 254
            D L K          L++   K        +    + GAE KGL     Q+  ++   +
Sbjct: 64  EDFLDKNDVKN--LYLLTTKGDKNYTDFKFEENDYFMFGAETKGLPDYIHQKYPSTRLRI 121

Query: 255 HM--PGIIKALNVSNAAAVALYITQNH 279
            M      + LN+SN+ AV LY     
Sbjct: 122 PMIPKENARCLNLSNSVAVLLYEALRQ 148


>gi|189350875|ref|YP_001946503.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
 gi|189334897|dbj|BAG43967.1| tRNA/rRNA methyltransferase [Burkholderia multivorans ATCC 17616]
          Length = 276

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    + S
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAVAMASGADDVLASAHVVS 92

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L +AL  +H     +I L++ +++                 ++++  IAL+ G E  GL
Sbjct: 93  TLGEALSGVH----WSIALTARTREYGPPRLAPRAAAAHACTQVESGDIALVFGNERTGL 148

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 149 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 188


>gi|194477215|ref|YP_002049394.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
 gi|171192222|gb|ACB43184.1| probable tRNA/rRNA methyltransferase [Paulinella chromatophora]
          Length = 255

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 18/159 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI- 190
           S L++VL     P N+G++ R    F  D +               + A      +    
Sbjct: 5   SPLVLVLVQPAGPINVGSVARLCANFGIDELRLVAPCCNPIDMAAKQMAVHGTSILNRAL 64

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEG 237
              NL  AL        + +  S              ++   L     +   AL+ G E 
Sbjct: 65  IYPNLVSALADCR----RVVACSGRINKEVLTTNVPEEALSWLLTTEVDGPSALVFGRED 120

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +GL       A  +  L       ++N+S+A A+ LY  
Sbjct: 121 RGLSNNELLLAGKVLKLITSPQYTSINLSHAVAIILYEL 159


>gi|229015864|ref|ZP_04172832.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region
           [Bacillus cereus AH1273]
 gi|228745426|gb|EEL95460.1| Uncharacterized tRNA/rRNA methyltransferase in gldA 3'region
           [Bacillus cereus AH1273]
          Length = 61

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 232 ILGAEGKGLRPKTQE-TATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + G E  GL     E        + M   +++LN+SN AA+ +Y     
Sbjct: 1   MFGRETNGLPANVIEENFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQ 49


>gi|150015482|ref|YP_001307736.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
 gi|149901947|gb|ABR32780.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
           8052]
          Length = 162

 Score = 57.4 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +            + ++     + +      + 
Sbjct: 14  IVLYEPEIPQNTGNIARTCVLTGSKLHLIKPLGFEINEKQVRRAGLDYWKDLDLEIHDSY 73

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + L+K           ++  +   ++    +   ++ G E  G+  +          + 
Sbjct: 74  EEFLKKYGEK--TIYLSTTHGETHFDEISFKEGDFIMFGRESSGVPEEVHNR-HIGFRVP 130

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           M     ++LN+SN  A+  Y       
Sbjct: 131 MIKSSTRSLNLSNTVAIVAYEALRQIG 157


>gi|11499390|ref|NP_070629.1| hypothetical protein AF1801 [Archaeoglobus fulgidus DSM 4304]
 gi|2648747|gb|AAB89450.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 226

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 34/154 (22%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKM 202
           P N+G I R A  +    +   K     ES     +A+ A + +   + + +L + LQ+M
Sbjct: 8   PENVGFIARVAKNYGIKRLCLYKCRVTEES---YHTAANAKDVLENAVVVEDLQEFLQRM 64

Query: 203 HSWGFQTIGLSS---DSKKPLEQEIK---------NDKIALILGAEGKGLRPKTQETATS 250
           +      +G +       K L +E+            ++A++ G E  GL  +  E    
Sbjct: 65  N----LIVGTTGIPGGDYKYLRKELLAPEDLPSVAKGRVAVLFGREDYGLYNEELEMCHV 120

Query: 251 MAHLH-------MPGIIKALNVSNAAAVALYITQ 277
           +  +        M       NVS+AAAV LY  +
Sbjct: 121 LVRVPTSEEYPVM-------NVSHAAAVILYFLR 147


>gi|182419771|ref|ZP_02951011.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237666641|ref|ZP_04526626.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376319|gb|EDT73901.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
 gi|237657840|gb|EEP55395.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 154

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V   C   +            + ++       +      + 
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTDCKLHLIKPLGFDINEKQVKRAGLDYWSELNLEIHESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L+K  +                E E K+    ++ G E  G+             + 
Sbjct: 65  EDFLEKYGNERIFLATTHETGTHYDEIEFKSGDF-IMFGRETCGVPEDVHNR-HKGLRVP 122

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           M     ++LN+SN  A+  Y       
Sbjct: 123 MIKSSTRSLNLSNTVAIVAYEALRQIG 149


>gi|71662121|ref|XP_818072.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883301|gb|EAN96221.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 392

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 28/168 (16%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYI 190
           ++ + +++   P N+G ILR+   F   G+I +     +  +   +  + + A    PY+
Sbjct: 169 RVFVAVENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQA-AGFSSPYV 227

Query: 191 RISNLTDALQKMHSWG---FQTIGLSS-DSKKP--------LEQEIKNDK---------- 228
            I ++T+  + +          + +   D   P        L       +          
Sbjct: 228 AIPDITNLFEVLEGATSFEAVVVAVDMIDGATPLPLYRHPCLHALDGGARKRSRCTLPNL 287

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  + G E   +R +      S   L   G   +LN++ A  V LY  
Sbjct: 288 VVYLFGPEDGSIRQEVLARCHSAVFLPTQG---SLNLAAAVNVVLYDR 332


>gi|292486593|ref|YP_003529461.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292897830|ref|YP_003537199.1| RNA-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291197678|emb|CBJ44773.1| putative RNA-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291552008|emb|CBA19045.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312170652|emb|CBX78915.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 156

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-----GALEHIPYI 190
           +VL     P N G I+R          +        +   L ++        A+ H    
Sbjct: 3   IVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHHASY 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
                ++A Q++  +   T G  + S    +         L+ G E +GL  +      A
Sbjct: 63  EAFTASEAPQRL--FALTTKGTPAHSAVSYQAGDY-----LLFGPETRGLPARVLNALPA 115

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M    +++N+SNA +V +Y      
Sbjct: 116 QQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 147


>gi|81428093|ref|YP_395092.1| putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
 gi|78609734|emb|CAI54780.1| Putative rRNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
          Length = 169

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 144 PHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           P N G I R+      D ++         ++   L ++     + +      NL   L+ 
Sbjct: 13  PANTGNIARTCA--GTDTVLDLIEPLGFETDDKHLKRAGLDYWDQVKINYHKNLDAFLET 70

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPK-TQETATSMAHLHMP 257
           +         ++  +K+    +   D       + G E  GL     +E       + M 
Sbjct: 71  VPDRK-HLYLITKFAKQAYSDQDVTDTSVDHYFMFGKETTGLPETFMRENEDQCLRIPMS 129

Query: 258 GIIKALNVSNAAAVALYITQNH 279
             I+ALN+SN AA+ ++     
Sbjct: 130 DHIRALNLSNCAALVIFEALRQ 151


>gi|329905921|ref|ZP_08274299.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547412|gb|EGF32238.1| tRNA:Cm32/Um32 methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 251

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 21/170 (12%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPS-ESAVLAKSAS 181
             +D    ++L  VL   + P NIGA  R+       D ++   R++ + +       AS
Sbjct: 4   AQIDTSLFTRLRFVLVETSRPGNIGAAARAMKTMGFTDLVLVNPRFADAAQQDEAVAFAS 63

Query: 182 GALEHIPYIR-ISNLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKND--- 227
           GA + +   R + ++ +AL           ++  +         +  +    E+  +   
Sbjct: 64  GAQDVLANARIVGSIEEALVDCNYAAAVSARLREFSPPV-----NGPRKFADEVAGNAAL 118

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           ++AL+LG E  GL  +  E    + ++       +LN+  A  V  Y  +
Sbjct: 119 RVALVLGNERFGLPNEIVEKCNVLINIPANPAYSSLNLGQAVQVLAYECR 168


>gi|296284574|ref|ZP_06862572.1| putative RNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 160

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 2/134 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +     N GA+ R+ VA   + ++            L ++     +HI      + 
Sbjct: 8   IVLVNPEIAGNTGAVGRTCVALDMELVLIHPLGFTITDTRLKRAGLDYWQHIRLAEFRSW 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
               ++      Q       + +   Q    +   L+ G E KGL P+  E     M  L
Sbjct: 68  EAFFEERSPRADQLFLFEEYAPRDFYQPEYPEDAYLVFGRETKGLPPEIVEAHRAQMVSL 127

Query: 255 HMPG-IIKALNVSN 267
            M    +++LN++N
Sbjct: 128 PMKSDKVRSLNLAN 141


>gi|146302851|ref|YP_001190167.1| tRNA/rRNA methyltransferase SpoU [Metallosphaera sedula DSM 5348]
 gi|145701101|gb|ABP94243.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera sedula DSM 5348]
          Length = 231

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++L      +N+G + R    F  D +          +  L  SA G       +  S
Sbjct: 2   LRVILVEPEGEYNVGFVARLCKNFEVDQLYIVNPRCD-LNKALEFSAKGRDFMEKVVVTS 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKT 244
            L +AL+ +      T  ++      L + +          N K  L+ G E  GL  + 
Sbjct: 61  TLEEALRDL-DLKISTSSIADSKGDMLRKSMPPWEIVKLMENRKTGLVFGRESVGLTREE 119

Query: 245 QETATSMAHLHMPGIIKA---LNVSNAAAVALYI 275
                 M H+       +   LN+S+A  + LY 
Sbjct: 120 ILMTDIMVHIP-ANR--SYPVLNLSHAVGIVLYE 150


>gi|28210123|ref|NP_781067.1| rRNA methyltransferase [Clostridium tetani E88]
 gi|28202559|gb|AAO35004.1| rRNA methyltransferase [Clostridium tetani E88]
          Length = 162

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +        +   L ++       +      + 
Sbjct: 12  IVLFQPEIPQNTGNIARTCVLTDSKLHLIKPLGFSLDEKHLKRAGLDYWSQLSLEIHESY 71

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
            D  +K     F     ++ S K        +   ++ G E  GL    +E    +   +
Sbjct: 72  EDLRKKYKDGKF--YFSTTHSTKTYSDVEFEEGDFIVFGRETSGLPDYVREDNRDTCIKV 129

Query: 255 HM-PGIIKALNVSNAAAVALYITQNHFA 281
            M     ++LN+SN  A+  Y       
Sbjct: 130 PMIKSSTRSLNLSNTVAIVTYEALRQMN 157


>gi|332638272|ref|ZP_08417135.1| 23S rRNA methyltransferase [Weissella cibaria KACC 11862]
          Length = 171

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+A   +    +        +   + ++     + +      NL   +  + 
Sbjct: 14  PANTGNIARTATGTNTKLHLIEPLGFKLDDKHVKRAGLDYWDTVDITVHENLPAFMATLK 73

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLR-PKTQETATSMAHLHMP-G 258
               +   +S  + +   +    +       + G E  GL  P  ++       +     
Sbjct: 74  DTD-ELFLISKFAPRAYHEADYTNPDHDYYFLFGKETTGLPEPFMKQHPEKALRIPQNDE 132

Query: 259 IIKALNVSNAAAVALYITQNH 279
            I++LN+SN AA+ +Y T   
Sbjct: 133 HIRSLNLSNTAAIIIYETLRQ 153


>gi|221481688|gb|EEE20064.1| hypothetical protein TGGT1_043460 [Toxoplasma gondii GT1]
          Length = 166

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 34/60 (56%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VLD V +  NIG ++R+A +     ++ +     + +A  A+ + G++ H+ +  +++
Sbjct: 60  VLVLDDVQNSDNIGTLMRTAFSLGVRSVLLSPVSFAAVNARSARVSMGSMFHLRFGFVTD 119


>gi|170734196|ref|YP_001766143.1| RNA methyltransferase [Burkholderia cenocepacia MC0-3]
 gi|254247124|ref|ZP_04940445.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
 gi|124871900|gb|EAY63616.1| RNA methyltransferase, TrmH family [Burkholderia cenocepacia PC184]
 gi|169817438|gb|ACA92021.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           cenocepacia MC0-3]
          Length = 156

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + G+E +GL  +  E         
Sbjct: 64  DAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAELLERFPNEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|325684460|gb|EGD26624.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 185

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 17/154 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCD-------GIITTKRYSPSESAVLAKSASGALEHIP 188
           +VL     P N G I R+    +         G     ++       L ++       + 
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLDLIEPLGFHLDDKH-------LKRAVLDYGGEVE 57

Query: 189 YIRISNLTDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQ 245
             R  +L   L  +  ++  +     SS +   ++   ++     + G E  GL     +
Sbjct: 58  IRRHDDLRAFLATLPDNAEMYLISKFSSKAYTDVDYTDESKDYYFVFGRETTGLLETFMR 117

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + A     + M   I+A N+SN+AA+ ++     
Sbjct: 118 QYADRNLRIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|82701806|ref|YP_411372.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
 gi|82409871|gb|ABB73980.1| RNA methyltransferase TrmH, group 1 [Nitrosospira multiformis ATCC
           25196]
          Length = 267

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 29/193 (15%)

Query: 101 IDKIVGKEAVHQGLA-LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC 159
           + ++V    V  GL+ L   PL    LD VR     +VL H + P NIG   R+      
Sbjct: 1   MHRVVISNGVFNGLSGLNVNPL--HLLDKVR-----IVLSHTSHPGNIGGAARAMKTMGL 53

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHSWGFQTIGLSSDSKK 218
           D +         +     + A+GAL+ +   ++ + L +AL      G       +  ++
Sbjct: 54  DSLYLVNPRFFPD-KEAERRATGALDILHKAKVCDTLDEAL-----SGTVLAAAVTARQR 107

Query: 219 PLEQEIKNDK--------------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
            L  E+ + +              +AL+ G E  GL          + H+       +LN
Sbjct: 108 DLSHEVFDGRQGATKLLDLAQKDFVALVFGTEMSGLTTLEVSKCQIIIHIPANPEYSSLN 167

Query: 265 VSNAAAVALYITQ 277
           +++A  V  Y  +
Sbjct: 168 LASAVQVMAYELR 180


>gi|16331860|ref|NP_442588.1| hypothetical protein slr0120 [Synechocystis sp. PCC 6803]
 gi|1208490|dbj|BAA10658.1| slr0120 [Synechocystis sp. PCC 6803]
          Length = 240

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 16/146 (10%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMH 203
            N+GAI R+      + +I         S      A  A + +   ++  +L  AL    
Sbjct: 7   RNVGAIARAMKNMGLEELILVNPRCDYRSVEAQTMAVHAKDVLAQAKVVDDLATALGDRQ 66

Query: 204 SWGFQTIGLSSDSK---KPLEQ--------EIKNDKIALILGAEGKGLRPKTQETATSMA 252
               + I  S+  +    P+E            N K AL+ G E  GL  +    A    
Sbjct: 67  ----RIIATSARERILQSPMETPRQALPWLLAPNLKSALVFGREDSGLTNEELNQAHRFV 122

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            + +     +LN+S A  V  Y    
Sbjct: 123 RIPVHPQYPSLNLSQAVMVCTYELYQ 148


>gi|71894579|ref|YP_278687.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
 gi|71851367|gb|AAZ43976.1| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
          Length = 178

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 10/144 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHS 204
           N   I+RS  A      I              ++A+G L   I +    +  D   K  +
Sbjct: 14  NTANIIRSCYALGAKLHIIKPLGFDLHPKYFKRAAAGRLLSDIRHEVHDSYLDFYNKYKN 73

Query: 205 WG---FQTIGLSSDSKKPLEQEIKNDK-IALILGAEGKGLRPKTQE-TATSMAHLHMPGI 259
                    GL S  K   + E   DK I  + G E  G+  +  +        + M   
Sbjct: 74  ANVFYITRYGLKSYDKVDFKNEYSKDKNIFFMFGRESTGIDKEILKNNIDKCLRIPMVSK 133

Query: 260 IKALNVSNAAAVAL--YITQNHFA 281
           ++++N++N   V +  +       
Sbjct: 134 MRSINLANT--VCIVGFEFMRQMN 155


>gi|294056522|ref|YP_003550180.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615855|gb|ADE56010.1| tRNA/rRNA methyltransferase (SpoU) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 150

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 40/149 (26%), Gaps = 7/149 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N G I R          +            L +S       +      N 
Sbjct: 4   IVLFNPEIPQNTGNIGRLCAITESRLHLIHPLGFTITDKHLKRSGMDYWHSLDVHHHDNW 63

Query: 196 TDALQKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMA 252
                  H+            +         ++   L+ G EG G  P     E      
Sbjct: 64  DAFKASPHAPKRLWLFTT--KADHSYWDVEYSNDDGLLFGNEGHG-APDWLHHELEGQRL 120

Query: 253 HLHMPGI-IKALNVSNAAAVALYITQNHF 280
            +      +++LN+S +  +A Y      
Sbjct: 121 TIPHKNDSLRSLNLSTSVGIAAYEALRQL 149


>gi|317050081|ref|YP_004117729.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316951698|gb|ADU71173.1| RNA methyltransferase, TrmH family, group 2 [Pantoea sp. At-9b]
          Length = 157

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        N 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIHPLGFGWDDKRLRRAGLDYHEFTAIKHHDNY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +        +   T G  + S    +         L+ G E +GL            
Sbjct: 64  AAFVAAEAPQRLFALTTKGTPAHSAVRYQAGDY-----LVFGPESRGLPADILNALPPEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPESRSMNLSNAVSVVVYEAWRQL 148


>gi|256831713|ref|YP_003160440.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
 gi|256685244|gb|ACV08137.1| tRNA/rRNA methyltransferase (SpoU) [Jonesia denitrificans DSM
           20603]
          Length = 186

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKM 202
           P N G+ +R A        +          A + +  +G   H +  + I    DAL  +
Sbjct: 44  PGNTGSAIRLAAVTGARLHVVEPLGFDLSEAKVKR--AGLDYHDLAVMDIHPSFDALVDL 101

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
           +    +    ++ +  P  +   +    L+ G E  GL          T    + M   +
Sbjct: 102 Y-PDSRVFAFTTRATVPFTEVTYSPTDLLVFGPEPTGLDDAVLNHPRITGEVRIPMLPGL 160

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN++N+A++A+Y     
Sbjct: 161 RSLNLTNSASIAVYEAWRQ 179


>gi|257899601|ref|ZP_05679254.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
 gi|257837513|gb|EEV62587.1| RNA methyltransferase TrmH [Enterococcus faecium Com15]
          Length = 168

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +     S+L   L  + 
Sbjct: 13  PANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHSDLEALLAFLG 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMP-GIIK 261
                 I   +      E     ++   + G E  GL     +E       + M    ++
Sbjct: 73  DRKLHLISKFAHKVYSEENFADGEEHFFLFGKETTGLPEAFMRENEEKCLRIPMNDEHVR 132

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN AA+ +Y     
Sbjct: 133 SLNLSNTAAMIVYEALRQ 150


>gi|115352957|ref|YP_774796.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|115282945|gb|ABI88462.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           AMMD]
          Length = 170

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 5/166 (3%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV 175
           +  AP      D      +++V   +  P N G ++R          +      P + A 
Sbjct: 1   MHVAPPRPAQPDPT-MFNVILVAPEI--PPNTGNVIRLCANTGARLHLIEPLGFPLDDAK 57

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
           + ++     E+       +    +        +    ++                 + G+
Sbjct: 58  MRRAGLDYHEYAEMRVHRDWDAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGS 117

Query: 236 EGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E +GL     E         L M    ++LN+SN  AV ++     
Sbjct: 118 ETRGLPADVLERFPNEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQ 163


>gi|171780246|ref|ZP_02921150.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281594|gb|EDT47029.1| hypothetical protein STRINF_02034 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 181

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +  I   ++
Sbjct: 19  VVLFQPQIPQNTGNIARTCAATNTPLHIIRPMGFPIDDRKMKRAGLDYWDKLDVIFYDSI 78

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
              ++K           S  ++K    E  ND      + G E KGL     +       
Sbjct: 79  EKFMEKCDGKVHLI---SKFAEKVYSDENYNDGNHHYFLFGREDKGLPEDFMRANPEKAL 135

Query: 253 HLHMP-GIIKALNVSNAAAVAL--YITQNHFA 281
            + M    +++LN+SN   V +  Y      A
Sbjct: 136 RIPMNDEHVRSLNLSNT--VCMIVYEALRQQA 165


>gi|329296939|ref|ZP_08254275.1| putative RNA methyltransferase [Plautia stali symbiont]
          Length = 228

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 14/145 (9%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKM 202
           P NIGA  R+        +         +     + A GA E + +++    L+ AL  +
Sbjct: 13  PENIGAAARAMKTMGFSELRIV-ASDAWQDPAARRVAHGAGEILDHVKTYDTLSAALADV 71

Query: 203 ---------HSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                        F+     + ++  L E+    ++IAL+ G E  GL  +  E    + 
Sbjct: 72  DFSVATTARSRAKFRYYATPAQAETILQEKRQWLNRIALVFGREDSGLTNEELEQVDLLT 131

Query: 253 HLHMPGIIKALNVSNAAAVALYITQ 277
            + M     +LN+  A  V +Y  Q
Sbjct: 132 GIPMAQDYPSLNLGQA--VMVYCYQ 154


>gi|331268747|ref|YP_004395239.1| tRNA/rRNA methyltransferase SpoU [Clostridium botulinum BKT015925]
 gi|329125297|gb|AEB75242.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium botulinum
           BKT015925]
          Length = 160

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 3/153 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              L +VL     P N G I R+ V  +    +        +   + ++      H+   
Sbjct: 4   TPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFSIDDKSVKRAGLDYWPHLKLE 63

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT 249
              +  D ++K        +  +  +K   ++    +   ++ G E  GL    ++    
Sbjct: 64  IHESFDDMIRKYPDANIY-LSTTKGAKYHHDEVNYKEGDFIVFGRESSGLPDYIRDKYVE 122

Query: 250 SMAHLHM-PGIIKALNVSNAAAVALYITQNHFA 281
           +   + M    +++LN+SN  ++  Y       
Sbjct: 123 NRIRVPMIKTTMRSLNLSNTVSIVAYEALRQLG 155


>gi|56750068|ref|YP_170769.1| tRNA/rRNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56685027|dbj|BAD78249.1| probable tRNA/rRNA methyltransferase [Synechococcus elongatus PCC
           6301]
          Length = 267

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 14/152 (9%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IR 191
            L +VL       N+GAI R  + F        +           + A  A   +   + 
Sbjct: 24  SLRIVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVL 83

Query: 192 ISNLTDALQKMHSWGFQTIGLS---------SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           + NL  AL+            +          +S   +   ++    ALI G E  GL+ 
Sbjct: 84  VDNLPSALEGCQ----WVAATTGQRDLRDLPLESPTQILPWLRQGPAALIFGREDSGLQR 139

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                A             +LN++ A  +  Y
Sbjct: 140 SELSLAQRYLTFPTDPAYPSLNLAQAVGLCCY 171


>gi|227519599|ref|ZP_03949648.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227554157|ref|ZP_03984204.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229544948|ref|ZP_04433673.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|229549215|ref|ZP_04437940.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255971931|ref|ZP_05422517.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|256616829|ref|ZP_05473675.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256763295|ref|ZP_05503875.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256853968|ref|ZP_05559333.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256957897|ref|ZP_05562068.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256961082|ref|ZP_05565253.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256963776|ref|ZP_05567947.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|257079834|ref|ZP_05574195.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|257081820|ref|ZP_05576181.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|257084362|ref|ZP_05578723.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|257087639|ref|ZP_05582000.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257416846|ref|ZP_05593840.1| RNA methyltransferase TrmH [Enterococcus faecalis AR01/DG]
 gi|257420063|ref|ZP_05597057.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|257421760|ref|ZP_05598750.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|293384028|ref|ZP_06629922.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           R712]
 gi|293386841|ref|ZP_06631411.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           S613]
 gi|294779486|ref|ZP_06744882.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           PC1.1]
 gi|300860577|ref|ZP_07106664.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TUSoD Ef11]
 gi|307270625|ref|ZP_07551916.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4248]
 gi|307271723|ref|ZP_07552994.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0855]
 gi|307276907|ref|ZP_07558017.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2134]
 gi|307287517|ref|ZP_07567560.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0109]
 gi|307290328|ref|ZP_07570243.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0411]
 gi|312908022|ref|ZP_07767005.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 512]
 gi|312953690|ref|ZP_07772527.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0102]
 gi|312978450|ref|ZP_07790188.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 516]
 gi|227072949|gb|EEI10912.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX0104]
 gi|227176699|gb|EEI57671.1| SpoU family RNA methyltransferase [Enterococcus faecalis HH22]
 gi|229305452|gb|EEN71448.1| SpoU family RNA methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|229309840|gb|EEN75827.1| SpoU family RNA methyltransferase [Enterococcus faecalis TX1322]
 gi|255962949|gb|EET95425.1| RNA methyltransferase TrmH [Enterococcus faecalis T1]
 gi|256596356|gb|EEU15532.1| RNA methyltransferase TrmH [Enterococcus faecalis ATCC 4200]
 gi|256684546|gb|EEU24241.1| RNA methyltransferase TrmH [Enterococcus faecalis T3]
 gi|256710911|gb|EEU25954.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256948393|gb|EEU65025.1| RNA methyltransferase TrmH [Enterococcus faecalis DS5]
 gi|256951578|gb|EEU68210.1| RNA methyltransferase TrmH [Enterococcus faecalis Merz96]
 gi|256954272|gb|EEU70904.1| RNA methyltransferase TrmH [Enterococcus faecalis HIP11704]
 gi|256987864|gb|EEU75166.1| RNA methyltransferase TrmH [Enterococcus faecalis JH1]
 gi|256989850|gb|EEU77152.1| RNA methyltransferase TrmH [Enterococcus faecalis E1Sol]
 gi|256992392|gb|EEU79694.1| RNA methyltransferase TrmH [Enterococcus faecalis Fly1]
 gi|256995669|gb|EEU82971.1| RNA methyltransferase TrmH [Enterococcus faecalis D6]
 gi|257158674|gb|EEU88634.1| RNA methyltransferase TrmH [Enterococcus faecalis ARO1/DG]
 gi|257161891|gb|EEU91851.1| RNA methyltransferase trmH [Enterococcus faecalis T11]
 gi|257163584|gb|EEU93544.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|291078508|gb|EFE15872.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           R712]
 gi|291083675|gb|EFE20638.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           S613]
 gi|294453443|gb|EFG21849.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           PC1.1]
 gi|300849616|gb|EFK77366.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498521|gb|EFM68023.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0411]
 gi|306501255|gb|EFM70558.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0109]
 gi|306506330|gb|EFM75490.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2134]
 gi|306511601|gb|EFM80600.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0855]
 gi|306512935|gb|EFM81576.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4248]
 gi|310626113|gb|EFQ09396.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 512]
 gi|310628528|gb|EFQ11811.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0102]
 gi|311288599|gb|EFQ67155.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           DAPTO 516]
 gi|315025562|gb|EFT37494.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2137]
 gi|315030285|gb|EFT42217.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4000]
 gi|315032790|gb|EFT44722.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0017]
 gi|315035173|gb|EFT47105.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0027]
 gi|315143811|gb|EFT87827.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX2141]
 gi|315148633|gb|EFT92649.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX4244]
 gi|315149956|gb|EFT93972.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0012]
 gi|315151957|gb|EFT95973.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0031]
 gi|315155539|gb|EFT99555.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0043]
 gi|315159161|gb|EFU03178.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0312]
 gi|315162160|gb|EFU06177.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0645]
 gi|315164915|gb|EFU08932.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1302]
 gi|315168781|gb|EFU12798.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1341]
 gi|315173728|gb|EFU17745.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1346]
 gi|315573839|gb|EFU86030.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0309B]
 gi|315580410|gb|EFU92601.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX0309A]
 gi|323481593|gb|ADX81032.1| SpoU rRNA Methylase family protein [Enterococcus faecalis 62]
 gi|327535888|gb|AEA94722.1| RNA methyltransferase [Enterococcus faecalis OG1RF]
 gi|329577392|gb|EGG58847.1| RNA methyltransferase, TrmH family, group 2 [Enterococcus faecalis
           TX1467]
          Length = 168

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      +L
Sbjct: 5   IVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
              L  +       +  +  + +   +   ND      + G E  GL     +E      
Sbjct: 65  AAFLAHVAGKHLHLV--TKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEKCI 122

Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNH 279
            + M    +++LN+SN AA+ +Y     
Sbjct: 123 RIPMNDEHVRSLNLSNTAALIVYEALRQ 150


>gi|37521709|ref|NP_925086.1| methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35212707|dbj|BAC90081.1| glr2140 [Gloeobacter violaceus PCC 7421]
          Length = 246

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL       N+GAI R    F    +         +       A  A + +   R +++
Sbjct: 5   IVLVATQGARNLGAIARVIKNFDLSELWLVAPECSPKDEEARHMAVHAADVLDQARIVAS 64

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-----------DKIALILGAEGKGLRPK 243
           L+ AL        +  G ++ ++   +  +                A + G E +GL  +
Sbjct: 65  LSQALADCT----RVAGTTARTRTVSDPPLLPAEGARWLRADKGTAAYVFGPEDRGLSNE 120

Query: 244 TQETATSMAHLHMPGII-KALNVSNAAAVALYIT 276
                     +   G    +LN++ A  +  Y  
Sbjct: 121 ELAHCQRTVQIP-TGAAYPSLNLAQAVGICAYAL 153


>gi|313471794|sp|A0KAS4|TRML_BURCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 156

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + G+E +GL  +  E         
Sbjct: 64  DAFVAAETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|254457964|ref|ZP_05071391.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
 gi|207085357|gb|EDZ62642.1| RNA methyltransferase, TrmH family [Campylobacterales bacterium GD
           1]
          Length = 136

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 14/131 (10%)

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK---MHSWGFQTIGLS 213
                 I        +   + ++     + +      ++ +  +K     +  F     +
Sbjct: 5   AGASLHIIKPIAFDIDEKAVRRAGLDYWDKLDLHVWESIEEFFEKNTITDNAHF----AT 60

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMP--GIIKALNVSNAAA 270
           + + KP  +    +   +  G+E  G+              + M   G   +LN++ +  
Sbjct: 61  TKTDKPYFEAEFKEGDFIFFGSETAGIPENILNAHKEQNITIPMTKEGR--SLNLAISTG 118

Query: 271 VALY--ITQNH 279
           + LY  I QNH
Sbjct: 119 IVLYDAIRQNH 129


>gi|163784272|ref|ZP_02179189.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880461|gb|EDP74048.1| rRNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 98

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 45  QPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
           + E   ++G + V  A+ +       L+A  + + +            ++ VP + ++++
Sbjct: 2   ENEKFVIWGRNPVVEAIKSGRSLEKILIAHDSHIPKQIIKLAEEKKIKIQKVPRKKVEEL 61

Query: 105 VGKEAVHQGLALETAPLLSPTLDAVRNSQL 134
            G +   QG+    +P+       +    +
Sbjct: 62  AGTKKT-QGIVALVSPISYWDATKLMQKTI 90


>gi|330446225|ref|ZP_08309877.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490416|dbj|GAA04374.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 170

 Score = 57.0 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 18/158 (11%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKSASGALE 185
           ++N+ +++ L +   P N+GA+LR+A  +  D +  T      +        K A     
Sbjct: 1   MKNASVIIGLTNPKSPTNVGAVLRAAGCYKADAVTYTGTRYDLAAKFQTDTKKMAQ---- 56

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            IP + + +  D L        + + +  ++    L      +K   I G E   +    
Sbjct: 57  TIPLLGVESFLDDLP----QDMKIVCVDFAEGATLLPHFEHPEKAIYIFGPEDGSIAQDV 112

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + A  + ++   G +   N++ +  V LY   +  AK
Sbjct: 113 ADKADHVVYVPTVGCM---NLAASVNVVLY---DRLAK 144


>gi|163868314|ref|YP_001609523.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017970|emb|CAK01528.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 276

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           +++L     P NIG + R+   F    +   K      +     +AS A   I   +   
Sbjct: 16  IIILVEPQLPENIGMVARAMANFGLSKLRLVKPRETFPNEKARAAASKADHVINNAVIFD 75

Query: 194 NLTDALQKMH---------SWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243
            L D++  +H           GF+T+  + ++   L Q E    K  ++ G E  GL   
Sbjct: 76  TLRDSIADLHYVFATTARERCGFKTVKSAVEAANVLRQRENIGHKTGIVFGRERWGLEND 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  +    +     +LN++ A  V L
Sbjct: 136 EISLVDEIITFPVNPAFASLNIAQA--VLL 163


>gi|299143770|ref|ZP_07036850.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518255|gb|EFI41994.1| RNA methyltransferase, TrmH family, group 3 [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 96

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 49  LFLYGVHTVSAALNNP-SRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGK 107
            ++YG + V   L N  + K++  +       +  +         +  +  + +D++  +
Sbjct: 3   EYVYGRNPVIEILKNKKADKLYVQMGNFEGSMKKIYAMAKEQNILITELNKKKLDEL-SE 61

Query: 108 EAVHQGLALETAPLLSPTLDAVRNSQL--LMVLD 139
            A HQG+    +     TL+ +  + +  +++LD
Sbjct: 62  GANHQGVVALVSGYEYSTLEDLILNGINQILILD 95


>gi|307545466|ref|YP_003897945.1| SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
 gi|307217490|emb|CBV42760.1| putative SpoU-family rRNA methylase [Halomonas elongata DSM 2581]
          Length = 244

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 24/158 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIGA  R+        ++        +    ++ A+GA + +   R+ ++
Sbjct: 7   IVLVQTYHPGNIGASARAMKTMGLTDLVLVNPRCFPD-PEASRLAAGAEDVVDQARVVTS 65

Query: 195 LTDALQKMHSWGFQTIGLSS--------------DSKKPLEQEIKNDKIALILGAEGKGL 240
           L++A+        Q +G S+              +    L    +   +AL+ G E  GL
Sbjct: 66  LSEAVADC----VQVVGASARLRSYPLPHYDEPAEMATSLVDNAREAPVALVFGRERFGL 121

Query: 241 RPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYIT 276
                   +    +       +  LN+S A  V  Y T
Sbjct: 122 TNDEIRDCSHQVSIPANPDYGV--LNLSQAVQVLAYET 157


>gi|134100013|ref|YP_001105674.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|291002995|ref|ZP_06560968.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912636|emb|CAM02749.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 81

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           +S D  + L          L++G E  GL     E    +A + M
Sbjct: 1   MSEDGTRELAACDPRGPTVLVVGNETTGLSRGWTEACDEVARIRM 45


>gi|152997509|ref|YP_001342344.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150838433|gb|ABR72409.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
          Length = 240

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 21/161 (13%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA--VLAKSASGALEHIP 188
            +++ +VL + + P NIG   R+        +      +P E         ASGA + + 
Sbjct: 2   QNKVRIVLVNTSHPGNIGGAARAMKNMGLADLYL---VAPKEYPSDEAVSRASGATDILD 58

Query: 189 YIRISN-LTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDK----------IALILGAE 236
              I N L +AL          IG S+  +  P                    A + G E
Sbjct: 59  NAVIVNTLEEALADCQ----LVIGTSARERNIPWPLVDPRQAADLVFDEGLVTAFVFGRE 114

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +GL  +  +      H+       +LN+  A  V  Y  +
Sbjct: 115 DRGLTNEELQRCNYHVHIPSVETFSSLNLGAAVQVIAYELR 155


>gi|88857330|ref|ZP_01131973.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           tunicata D2]
 gi|88820527|gb|EAR30339.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           tunicata D2]
          Length = 175

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 12/146 (8%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+GA++R+A  +  D +  +       +   A       EHIP I I++L  
Sbjct: 14  LVNPKSPTNVGAVMRAAGCYDVDSVFYSGVRFD-RARKFATDTKNVSEHIPLIGIADLKQ 72

Query: 198 ALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
           A+ +    G + I +   +    L +    D    + G E   L     +    + ++  
Sbjct: 73  AVPE----GAKVIAVELIEGATALTRYQHPDNAFYVFGPEDGSLGKDILKWCDDVVYIPT 128

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
            G +   N++    V LY   +  AK
Sbjct: 129 IGCM---NLAATVNVVLY---DRLAK 148


>gi|288931197|ref|YP_003435257.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
 gi|288893445|gb|ADC64982.1| RNA methyltransferase, TrmH family, group 1 [Ferroglobus placidus
           DSM 10642]
          Length = 230

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 35/162 (21%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL  +  P NIG I R    F  + ++    Y+ + S     +A+ A + +   +++ N
Sbjct: 4   VVLVELKIPENIGFIARVMKNFGFEKLVL---YNCNVSKESYITAAHAKDVLDKAVKVEN 60

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK--------PLE-----QEIKNDKIALILGAEGKGLR 241
           L + L++ +      +G +    +        P       +E+   + A++ G E  GL 
Sbjct: 61  LKEYLEEKN----LVVGTTGVRSRRVERYIRRPYYTPEELREMIKGETAILFGREDYGLY 116

Query: 242 PKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
            +  +    +  +        M       NVS+AAAV LY  
Sbjct: 117 DEELKLCNVIVSVPTSEEYPVM-------NVSHAAAVILYEL 151


>gi|325916981|ref|ZP_08179223.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536832|gb|EGD08586.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 293

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL     P NIGA  R+         ++     +        + ++GA      +  + L
Sbjct: 49  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAE---DVLGNAPL 103

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
            D L +  +     IG ++ +++   +E+  D+              +A + G E  GL 
Sbjct: 104 FDTLSEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLT 163

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +  H+       +LN++ A  V  Y  +
Sbjct: 164 NDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 199


>gi|319408555|emb|CBI82208.1| RNA methyltransferase [Bartonella schoenbuchensis R1]
          Length = 279

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VL     P NIG + R+   F    +   K      +     +AS A   I    + N
Sbjct: 16  IIVLVEPQLPENIGMVARAMANFGLSNLRLVKPREVFPNEKARAAASKADHIIDNALVFN 75

Query: 195 -LTDALQKM---------HSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243
            L DA+  +            GF+T+  + ++   L   E    KI ++ G E  GL+  
Sbjct: 76  TLYDAIADLNYVLGTTARKRCGFKTVRSAVEAAGILRYHEGIGHKIGILFGRERWGLKND 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               A  +    +     +LN++ A  V L
Sbjct: 136 EISFADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|71650563|ref|XP_813977.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70878910|gb|EAN92126.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 392

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 28/168 (16%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYI 190
           ++ + +++   P N+G ILR+   F   G+I +     +  +   +  + + A    PY+
Sbjct: 169 RVFVAVENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQA-AGFSSPYV 227

Query: 191 RISNLTDALQKMHSWG---FQTIGLSS-DSKKP--------LEQEIKNDK---------- 228
            I ++ +  + +          + +   D   P        L       +          
Sbjct: 228 AIPDIINLFEVLEGATSFEAFVVAVDMIDGATPLPLYRHPCLHALDGGARKRSRCTLPNL 287

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +  + G E   +R +      S   L   G   +LN++ A  V LY  
Sbjct: 288 VVYLFGPEDGSIRQEVLARCHSAVFLPTQG---SLNLAAAVNVVLYDR 332


>gi|91775165|ref|YP_544921.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
           KT]
 gi|91709152|gb|ABE49080.1| RNA methyltransferase TrmH, group 1 [Methylobacillus flagellatus
           KT]
          Length = 251

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 59/153 (38%), Gaps = 13/153 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   + P NIGA  R+        ++  K  S    A     ASGA + +   ++ + 
Sbjct: 13  IVLCQTSHPGNIGAAARAMKTMGLSQLVLVKPKSFP-HAEATAMASGATDILDNTQVCAT 71

Query: 195 LTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L +AL           +      + +   +  ++ +E    +  +A++ G E  GL    
Sbjct: 72  LAEALHGTTLAIGMSARRRELSHELVSARTGVQRAIEAA-HDAPVAIVFGTEMSGLSNAE 130

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +    +A +       +LN++ A  V  Y  +
Sbjct: 131 LDHCQLLAMIPANPEYSSLNLAAAVQVISYELR 163


>gi|332285809|ref|YP_004417720.1| RNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330429762|gb|AEC21096.1| RNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 166

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R A        +        +   L ++     E       ++L
Sbjct: 14  IVLVSPEIPPNTGNVIRLAANTGASLHLVRPLGFELDDKKLKRAGLDYHEWAAMQVHNDL 73

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE---TATSMA 252
             AL  +     +   L++   + + +         + G E  GL P        A    
Sbjct: 74  DAALNIIGGDPSRRYALTTKGSRLMAEFSFKPGDVFVFGRETAGLSPGQLACFPQA-QRL 132

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            L M    ++LN+SNA AV ++     
Sbjct: 133 RLPMMPQQRSLNLSNAVAVTVFEAWRQ 159


>gi|170699785|ref|ZP_02890818.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           IOP40-10]
 gi|171321115|ref|ZP_02910092.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           MEX-5]
 gi|172061809|ref|YP_001809461.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|313471799|sp|Q0BBL1|TRML_BURCM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|170135312|gb|EDT03607.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           IOP40-10]
 gi|171093605|gb|EDT38765.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           MEX-5]
 gi|171994326|gb|ACB65245.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ambifaria
           MC40-6]
          Length = 156

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + G+E +GL     E         
Sbjct: 64  DAFVAAEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPNEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|125562106|gb|EAZ07554.1| hypothetical protein OsI_29808 [Oryza sativa Indica Group]
          Length = 298

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS------MAHLHMPGI-IKAL 263
           G S  S    +         L+ G+E KGL     E  +          + M    ++ L
Sbjct: 201 GTSIHSDFSYKPGDW-----LVFGSETKGLPQSALEDCSREGLGGGTIRIPMVETYVRCL 255

Query: 264 NVSNAAAVALYITQNHFA 281
           N+S +  VALY       
Sbjct: 256 NLSVSVGVALYEAARQLN 273


>gi|282600474|ref|ZP_05974442.2| RNA methyltransferase, TrmH family, group 2 [Providencia
           rustigianii DSM 4541]
 gi|282565196|gb|EFB70731.1| RNA methyltransferase, TrmH family, group 2 [Providencia
           rustigianii DSM 4541]
          Length = 233

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        + 
Sbjct: 70  IVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHHHDY 129

Query: 196 TDALQK--------MHSWGFQTIGLS-----SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L+             G +   L+     S S     ++       L+ G E +GL P
Sbjct: 130 YAFLESEGLNPDNNQSESGTRVFALTTKGKPSHSNVSYREDDY-----LMFGPETRGLPP 184

Query: 243 KTQET--ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +         + M    +++N+SN+ AV ++       
Sbjct: 185 YVLDNMPMEQKIRIPMLAESRSMNLSNSVAVVVFEAWRQLG 225


>gi|77361588|ref|YP_341163.1| tRNA/rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876499|emb|CAI87721.1| putative tRNA/rRNA methyltransferase (trmH family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 241

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 24/169 (14%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD +R     +VL + +   NIG+  R+        +      +    +  +  A+GA +
Sbjct: 3   LDDIR-----VVLVNTSHSGNIGSAARAMKTMGLSKLYLVDP-ACEIDSHASALAAGASD 56

Query: 186 HI-PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIAL 231
            +   + +  + DA+         TIG S+ S+                  E  N  +AL
Sbjct: 57  VLGNAVIVDTVADAIADCA----LTIGTSARSRTLSWPMVEPRECGEKLVSEAVNGPVAL 112

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           + G E  GL     +       +       +LN++ A     Y T+  F
Sbjct: 113 VFGRENSGLSNDELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAF 161


>gi|88799598|ref|ZP_01115174.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297]
 gi|88777683|gb|EAR08882.1| putative tRNA/rRNA methyltransferase [Reinekea sp. MED297]
          Length = 154

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 6/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIEPLGFSMDEKALRRAGLDYHEFAQIRIWPDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              LQ   +   +   LS+   +   +        L+ G E +GL    +E+     +  
Sbjct: 64  PTFLQ--QAQPPRLFALSTKGSQGYSEVAFQPGDYLMFGPETRGLPADIRESLPPEQVLR 121

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHFA 281
           L M    ++LN+SN  AV +Y    QN F+
Sbjct: 122 LPMLADSRSLNLSNTVAVMVYEAWRQNGFS 151


>gi|3023080|gb|AAC12641.1| putative rRNA methylase [Synechococcus sp. PCC 7002]
          Length = 62

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYITQNHFA 281
           L+ G+E K       +   +   + +    +++LN+S +AAV L+  +    
Sbjct: 10  LLFGSETKASPQXLLQRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQLG 61


>gi|318040301|ref|ZP_07972257.1| tRNA/rRNA methyltransferase [Synechococcus sp. CB0101]
          Length = 241

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 19/160 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR- 191
            L +VL     P N+G++ R    F+ D +           A   + A      +   + 
Sbjct: 2   SLAVVLVEPAGPLNVGSVARLCANFAIDQLRLVAPRCDHLGAEARQMAVHGEALLEQAQL 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDKI-----------ALILGAEG 237
             +L  A+        + +  S   +    PL +     +            AL+ G E 
Sbjct: 62  YPDLAAAIADCQ----RVVATSGRIETESLPLSEPAPALRWLWQGSRGDAGAALVFGRED 117

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +GL       A  +  L       +LN+S+A A+ L+  Q
Sbjct: 118 RGLSNAELLQAGRLVRLATSEAYASLNLSHAVAICLHELQ 157


>gi|168185518|ref|ZP_02620153.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
           [Clostridium botulinum C str. Eklund]
 gi|169296507|gb|EDS78640.1| putative Hypothetical tRNA/rRNA methyltransferase homolog
           [Clostridium botulinum C str. Eklund]
          Length = 160

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 3/155 (1%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +    L +VL     P N G I R+ V  +    +        +   L ++      H+ 
Sbjct: 2   LDTPNLNIVLFEPEIPQNTGNIGRTCVLTNSKLHLIKPLGFRIDDKSLKRAGLDYWPHLD 61

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247
                +  D ++K  +     +  + + K   ++        ++ G E  GL    ++  
Sbjct: 62  VEIHESFDDMIKKYPNANIY-LSTTKEPKYHHDEVNYKKGDFIVFGRESSGLPDYIRDKY 120

Query: 248 ATSMAHLHMPGIIK-ALNVSNAAAVALYITQNHFA 281
             +   + M      +LN+SN  ++  Y       
Sbjct: 121 VENRIRVPMIKTTTRSLNLSNTVSIVAYEALRQLG 155


>gi|294084744|ref|YP_003551502.1| TrmH family RNA methyltransferase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664317|gb|ADE39418.1| RNA methyltransferase, TrmH family, group 2 [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 163

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 42/143 (29%), Gaps = 10/143 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I+R          +        +     ++     E     +  NL   L  + 
Sbjct: 12  PPNTGNIIRLCANTGARLHLVKPLGFSLDEKSCRRAGLDYHEMARVQQHDNLDACLDVL- 70

Query: 204 SWGF-----QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETAT-SMAHLHM 256
             G      +   ++    + +           + GAE  GL               L M
Sbjct: 71  --GMSINTQRLFAITKFGTQIVHDTTFVAGDVFLFGAETTGLPDSIHAALGDHQKLSLPM 128

Query: 257 PGIIKALNVSNAAAVALYITQNH 279
               ++LN+SNA +V LY     
Sbjct: 129 LPANRSLNLSNAVSVTLYEAWRQ 151


>gi|302877882|ref|YP_003846446.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
           capsiferriformans ES-2]
 gi|302580671|gb|ADL54682.1| RNA methyltransferase, TrmH family, group 1 [Gallionella
           capsiferriformans ES-2]
          Length = 253

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL H   P NIGA  R+  A     +         +    +  A+GA + +   +  ++
Sbjct: 12  VVLSHTTHPGNIGAAARAMKAMGLSRLYLINPRHFPD-PQASAMAAGADDVLQNAVVCAS 70

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           + +AL  +      T+G+++  +                 Q+ +  ++AL+ G E  GL 
Sbjct: 71  IDEALDGV----VLTVGMTARQRDISNEVSVPREAMPQVVQQAQTLQVALLFGTEMSGLT 126

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +    A  + ++       +LN++ A
Sbjct: 127 NEEASRAQMLVNIPANPEFSSLNLAAA 153


>gi|312962919|ref|ZP_07777406.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
 gi|311282946|gb|EFQ61540.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens WH6]
          Length = 256

 Score = 56.2 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL + + P NIG + R+        ++  +          A+++ GA + +   ++ + 
Sbjct: 7   VVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPRVFPHHEADARAS-GANDLLEKAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGL 240
           L DAL   +      +G S+                 K + + +   +IAL+ G E  GL
Sbjct: 66  LEDALVGCN----LVLGTSARDRRIPWPLLDPRECGSKVVVEAVGGAEIALVFGREDSGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN+  A  V  Y  +
Sbjct: 122 TNEELQRCHYHVHIPSDPEFSSLNLGAAVQVLTYEVR 158


>gi|317046840|ref|YP_004114488.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316948457|gb|ADU67932.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
          Length = 234

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 46/147 (31%), Gaps = 18/147 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIGA  R+        +         +     + A GA E +  ++  +     + + 
Sbjct: 13  PENIGAAARAMKTMGFSELRIV-ASDAWQDPAARRVAHGAGEILDSVKTYDTLS--EALQ 69

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRPKTQETATS 250
              F     +    K                      +IAL+ G E  GL  +  E    
Sbjct: 70  DVDFSVATTARSRAKFRYYATPVQVESILQEKRQWLNRIALVFGREDSGLTNEELEQVDL 129

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + M     +LN+  A  V +Y  Q
Sbjct: 130 LTGIPMANDYPSLNLGQA--VMVYCYQ 154


>gi|117924869|ref|YP_865486.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
 gi|117608625|gb|ABK44080.1| tRNA/rRNA methyltransferase (SpoU) [Magnetococcus sp. MC-1]
          Length = 258

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 60/158 (37%), Gaps = 21/158 (13%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +LDH +   N+GA LR+      + +   +         +   A+G    IP I++ +
Sbjct: 14  VFILDHPSHGGNVGAALRAITNMGFEHLRLVRPRFFP-HPDVEAWAAGTAARIPTIQVFD 72

Query: 195 LTDA----LQKM-------HSWGFQT-----IGLSSDSKKPLEQEIKNDKIALILGAEGK 238
             DA    L  +            Q      +G+  D K    Q++ + ++ ++ G E  
Sbjct: 73  SLDAATADLNHLVAVTRRGRGQRHQVMSPRELGVRLDPK----QQLASSRVGILFGTERT 128

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL     E    +  +   G   +LN+S A  +  Y  
Sbjct: 129 GLETADVERCHWICTIPTHGEKGSLNLSQAVMLVAYEL 166


>gi|107023784|ref|YP_622111.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU
           1054]
 gi|105893973|gb|ABF77138.1| RNA methyltransferase TrmH, group 2 [Burkholderia cenocepacia AU
           1054]
          Length = 168

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ++R          +      P + A + ++     E+       +    +    
Sbjct: 24  PPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDWDAFVAAET 83

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIK 261
               +    ++                 + G+E +GL  +  E         L M    +
Sbjct: 84  PDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQRVRLPMRPDNR 143

Query: 262 ALNVSNAAAVALYITQNH 279
           +LN+SN  AV ++     
Sbjct: 144 SLNLSNTVAVVVFEAWRQ 161


>gi|254786631|ref|YP_003074060.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
 gi|237685931|gb|ACR13195.1| tRNA-methyltransferase TrmJ [Teredinibacter turnerae T7901]
          Length = 261

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 17/159 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + MV+ +   P NIGA  R+        ++            + + A+GA + +   R
Sbjct: 7   PNIRMVMVNTTHPGNIGAAARAMKNMGLSELVLVDPKEFPAEKAVWR-AAGATDVLENAR 65

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGK 238
           + +  D  + +   G   IG S+  ++                 E     +A++ G E +
Sbjct: 66  VVSTLD--EAISDCGL-VIGTSARERRIPWPLLTPRECGDRCWFEAAKHPVAVVFGREDR 122

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +         H+       ALN+S A  V  Y  +
Sbjct: 123 GLTNEELHKCNYHVHIPSNPEYSALNISAALQVICYEIR 161


>gi|46201064|ref|ZP_00055847.2| COG0219: Predicted rRNA methylase (SpoU class) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 139

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 42/116 (36%)

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           +LR +        I        +   + ++    +    YIR  +       + S G + 
Sbjct: 1   MLRLSACLGVGVDIIEPCGFVLDERKVRRAGMDYIHQASYIRHVSWDAFAATLASGGRRL 60

Query: 210 IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
           + L++      ++        +++G E  G+  +  + A +   + M    ++LNV
Sbjct: 61  VLLTTGGADRHDRFPFAPGDTIMVGRESCGVPTEVFDRAGARIRIPMRAGARSLNV 116


>gi|188532254|ref|YP_001906051.1| putative tRNA/rRNA methyltransferase YibK [Erwinia tasmaniensis
           Et1/99]
 gi|188027296|emb|CAO95139.1| rRNA methyltransferase CspR (SpoU class) [Erwinia tasmaniensis
           Et1/99]
          Length = 157

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E       ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFAWDDKRLRRAGLDYHEFAAIRHHASY 63

Query: 196 TDALQKM---HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
                       +   T G  + S    +         L+ G E +GL  +  +   A  
Sbjct: 64  EAFAASETPRRLFALTTKGTPAHSAVSYQAGDY-----LLFGPETRGLPARVLDALPAQQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              + M    +++N+SNA +V +Y      
Sbjct: 119 KIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|115352170|ref|YP_774009.1| RNA methyltransferase [Burkholderia ambifaria AMMD]
 gi|115282158|gb|ABI87675.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           AMMD]
          Length = 273

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 14/157 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P+          ASGA + +    +  
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPNVQDDPEAIAMASGADDVLASAHVVP 90

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L DAL           +   +G   +   + +++   Q    D IAL+ G E  GL  +
Sbjct: 91  TLGDALSGVHWSIALTARTREYGPPRLAPRAAAEQACMQVGAGD-IALVFGNERTGLANE 149

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 150 HVEQCSALAHIPANPAYSSLNLAQAIQVLAYELRVAF 186


>gi|308185599|ref|YP_003929730.1| RNA methyltransferase [Pantoea vagans C9-1]
 gi|308056109|gb|ADO08281.1| putative RNA methyltransferase [Pantoea vagans C9-1]
          Length = 245

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 14/153 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L     P NIGA  R+        +         +     + A GA E +      + 
Sbjct: 16  LILVSPARPENIGAAARAMKTMGFSQLRIV-ASDAWQDPAARRVAHGAGEILDNVQTFAT 74

Query: 195 LTDALQKM---------HSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L +AL  +             F+          + LE+    + +AL+ G E  GL  + 
Sbjct: 75  LAEALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEE 134

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            E    +  + M     +LN+  A  V +Y  Q
Sbjct: 135 LEQVDLLTGIPMANDYPSLNLGQA--VMVYCYQ 165


>gi|81300411|ref|YP_400619.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
           7942]
 gi|81169292|gb|ABB57632.1| RNA methyltransferase TrmH, group 1 [Synechococcus elongatus PCC
           7942]
          Length = 245

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 14/152 (9%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IR 191
            L +VL       N+GAI R  + F        +           + A  A   +   + 
Sbjct: 2   SLRIVLVEPAGARNVGAIARVMMNFGLSDWAIVRPRCDIHGGEARQMAVHAAALLEQAVL 61

Query: 192 ISNLTDALQKMHSWGFQTIGLS---------SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           + NL  AL+            +          +S   +   ++    ALI G E  GL+ 
Sbjct: 62  VDNLPSALEGCQ----WVAATTGQRDLRDLPLESPTQILPWLRQGPAALIFGREDSGLQR 117

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                A             +LN++ A  +  Y
Sbjct: 118 SELSLAQRYLTFPTDPAYPSLNLAQAVGLCCY 149


>gi|209696205|ref|YP_002264135.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|208010158|emb|CAQ80483.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 159

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R +     +  +        E   L ++     +     R  +    L  + + 
Sbjct: 14  NTGNIIRLSANCGANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKDYAAFLDYLENE 73

Query: 206 G---FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
                +    ++ +              L+ G E +GL  +  E         + M    
Sbjct: 74  SEGEHRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPAELIEGLPMEQRVRIPMMADS 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SN+ A+ ++       
Sbjct: 134 RSLNLSNSVAIIVFEAWRQMG 154


>gi|332671739|ref|YP_004454747.1| tRNA/rRNA methyltransferase SpoU [Cellulomonas fimi ATCC 484]
 gi|332340777|gb|AEE47360.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas fimi ATCC 484]
          Length = 246

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 12/147 (8%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD  R++   + +++     NIG+++R+A AF    +    R          + A   
Sbjct: 84  ADLDTRRHT-FHVAIENWQHDLNIGSVVRTANAFLAAEVHVVGRR-----RWNRRGAMVT 137

Query: 184 LEHIPYIRISNLTDALQKMHSWG-----FQTIGLS-SDSKKPLEQEIKNDKIALILGAEG 237
             +        + D L    + G        +G+       PLE         L+LG E 
Sbjct: 138 DRYQHLRHHPTVDDLLAWASTAGPDGGALPVLGIDNLPGSVPLEGYPLPRACVLLLGQES 197

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALN 264
            GL    +  A  + H+   G  +++N
Sbjct: 198 VGLSDAARAAAVDVLHIAQFGSTRSIN 224


>gi|313619703|gb|EFR91323.1| RNA methyltransferase [Listeria innocua FSL S4-378]
          Length = 104

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATS-MAHL 254
           L    + G +   ++   +        +D       + G E  GL  +  +        +
Sbjct: 1   LDFEKNAGGEFYYITKFGRHVYSDVDYSDPNKNYFFVFGKETTGLPDELLQANEENCLRI 60

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   I++LN+SN AAV  Y     
Sbjct: 61  PMTDHIRSLNLSNTAAVLAYEALRQ 85


>gi|152977823|ref|YP_001343452.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
 gi|150839546|gb|ABR73517.1| RNA methyltransferase, TrmH family, group 2 [Actinobacillus
           succinogenes 130Z]
          Length = 158

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              ++       +   L++       +        L+ G E +G+     +         
Sbjct: 64  ERFIESEKPK--RLFALTTKGGPAHSEVRFESGDFLMFGPETRGIPMSILDNMPMERKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AVA+Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVAVYEAWRQLG 149


>gi|297539147|ref|YP_003674916.1| TrmH family RNA methyltransferase [Methylotenera sp. 301]
 gi|297258494|gb|ADI30339.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera sp. 301]
          Length = 257

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 23/158 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHIPYIRIS 193
           +VL   + P NIG+  R+        +   K   P +      +  ++GA + +    ++
Sbjct: 23  VVLCQTSHPGNIGSAARAMKTMGLKHLYLVK---PDKFPDAHATALSTGAADLLENAIVT 79

Query: 194 N-LTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEGKG 239
             L++ALQ         IG+S+  ++   + +              +  IAL+ G E  G
Sbjct: 80  ETLSEALQGC----VLAIGMSARKRQISHELVNVREAAMRASKIAASQPIALVFGTEMSG 135

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L     +    +A +       +LN++ A  V  Y  +
Sbjct: 136 LSNAELDCCQLLAMIPANPEYSSLNLAAAVQVMCYEMR 173


>gi|197305217|pdb|3E5Y|A Chain A, Crystal Structure Of Trmh Family Rna Methyltransferase
           From Burkholderia Pseudomallei
 gi|197305218|pdb|3E5Y|B Chain B, Crystal Structure Of Trmh Family Rna Methyltransferase
           From Burkholderia Pseudomallei
          Length = 160

 Score = 56.2 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 8   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + GAE +GL P   +         
Sbjct: 68  DAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVR 127

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 128 LPMRPGNRSLNLSNTVAVVVFEAWRQ 153


>gi|170723500|ref|YP_001751188.1| RNA methyltransferase [Pseudomonas putida W619]
 gi|169761503|gb|ACA74819.1| RNA methyltransferase, TrmH family, group 1 [Pseudomonas putida
           W619]
          Length = 251

 Score = 56.2 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 12/153 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL + + P NIG   R+        ++  +      +   A+++ GA + +   ++  +
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLTRLVLVQPKEFPAADASARAS-GADDVLAGAQVVDS 65

Query: 195 LTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L  AL           +  S  +  I       K +E  +  ++IAL+ G E  GL  + 
Sbjct: 66  LEQALVGCSLVMGTSARERSIPWPLIDPRECGAKAVEHAVGGEEIALVFGREHAGLTNEE 125

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +      H+       +LN++ A  V  Y  +
Sbjct: 126 LQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVR 158


>gi|237822549|ref|ZP_04598394.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 115

 Score = 56.2 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 31/146 (21%)

Query: 1   MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
           M +I+ K +  + + K     K R++                        + G H    A
Sbjct: 1   MTIITSKANSVVKNAKKLRQKKYRKSA---------------------YLIEGWHLFEEA 39

Query: 61  LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAP 120
           +      I ++ A +N   +L   A          V    +  +   +   QG+      
Sbjct: 40  VQAGV-TIEKIFALENYRDQL---ATFSQTV---WVSEDILLDLADSQ-TPQGIVAVVQK 91

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHN 146
                 D  +     + L+ V DP N
Sbjct: 92  EEVGQADLSQGK--FLFLEDVQDPGN 115


>gi|206560519|ref|YP_002231284.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           cenocepacia J2315]
 gi|198036561|emb|CAR52458.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           cenocepacia J2315]
          Length = 244

 Score = 56.2 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           +L   + P N+GA  R+        ++      P           ASGA + +    + S
Sbjct: 1   MLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVS 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L +AL  +H     +I L++ +++                 ++    IAL+ G E  GL
Sbjct: 61  TLGEALSGVH----WSIALTARTREYGPPRLAPRAAAAQASAQVGTGDIALVFGNERTGL 116

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 117 ANEHVEQCSALAHIPANPAYSSLNLAQAVQVLAYELRVAF 156


>gi|149180216|ref|ZP_01858721.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
 gi|148852408|gb|EDL66553.1| RNA methyltransferase, TrmH family, group 2 [Bacillus sp. SG-1]
          Length = 156

 Score = 56.2 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N   I  +         +       ++  ++ ++     E +      +L
Sbjct: 5   VVLYQPEIPANTANIALTCAVTDTALHLIRPIGFSTDEKMIKRAGLDYWESVNITYYDSL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT-SMAHL 254
            +   K H   +        +    +      +   + G E  GL     E        +
Sbjct: 65  EEFFSKNHGEFYYIETYGEKAHSSFDFSDVTKEHYFMFGKETTGLPEDLPERYHGHFLRI 124

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M   +++LN+SN AA+ +Y     
Sbjct: 125 PMNDNVRSLNLSNTAAILVYEALRQ 149


>gi|167586794|ref|ZP_02379182.1| RNA methyltransferase TrmH, group 1 [Burkholderia ubonensis Bu]
          Length = 269

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 14/154 (9%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 28  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLASAHVVP 87

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L DAL           +   +G   +   + +++   Q      IAL+ G E  GL  +
Sbjct: 88  TLGDALSGVHWSIALTARTREYGPPRLAPRAAAEQACAQV-GTGDIALVFGNERTGLANE 146

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +++AH+       +LN++ A  V  Y  +
Sbjct: 147 HVDQCSALAHIPANPAYSSLNLAQAVQVLAYELR 180


>gi|238921657|ref|YP_002935172.1| hypothetical protein NT01EI_3813 [Edwardsiella ictaluri 93-146]
 gi|238871226|gb|ACR70937.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 157

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFHLHLIEPLGFIWDDKRLRRAGLDYHEFASIRRHHDY 63

Query: 196 TDAL---QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
           +  L   +    +   T G  + S              L+ G E +GL     ++     
Sbjct: 64  SSFLSGEKPTRLFALTTKGTPAHSDVTYRDGDY-----LLFGPETRGLPSTILDSLPTAQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SNA +V +Y       
Sbjct: 119 KIRIPMLASSRSMNLSNAVSVVVYEAWRQLG 149


>gi|291455964|ref|ZP_06595354.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
 gi|291382373|gb|EFE89891.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
          Length = 312

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 5/113 (4%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +      +GII     + S       + S   E      I+     ++++ +   + I L
Sbjct: 183 TGAGNGSEGIIGNSGATVSSHVSALNAVSAVAEAT--AEIAQADARIKELEAA--RIIAL 238

Query: 213 SS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
                  P+E      +  L+ GAEG GL  K  E A  + ++   G ++++N
Sbjct: 239 DIIPGAVPMETYAFPKRCLLLFGAEGPGLSSKALELADDVVYISQFGSVRSIN 291



 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF    +               K A 
Sbjct: 74  IKEDLDAHGRHDFEVAVENWTHDFNIGSMVRTANAFQAKRVHI-----VGPHKWNRKGAL 128

Query: 182 GALEHIPYIRISNLTDALQKMHSW 205
               +       ++ + ++  H+ 
Sbjct: 129 MTELYQHVEHHPSIAELVECWHNR 152


>gi|182414536|ref|YP_001819602.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
 gi|177841750|gb|ACB76002.1| tRNA/rRNA methyltransferase (SpoU) [Opitutus terrae PB90-1]
          Length = 160

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 11/144 (7%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           +  N+G   R          +            L ++       +      +        
Sbjct: 14  NTGNVG---RMCALTRSRLHLIHPLGFVINDRNLRRAGMDYWRALDVHEHRDWASFRASA 70

Query: 203 HS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETAT-SMAHLHMPG 258
            +            S +        D   L+ G EG G  P+    E        +    
Sbjct: 71  VAPRRLWLFTT--KSTRCFWDARFEDGDGLVFGNEGSG-APEWLHAEIGDEQRVTIPHAN 127

Query: 259 -IIKALNVSNAAAVALYITQNHFA 281
             +++LN+S AA +A Y       
Sbjct: 128 PELRSLNLSTAAGIATYEALRQVG 151


>gi|254518073|ref|ZP_05130129.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226911822|gb|EEH97023.1| tRNA/rRNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 153

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V  +    +        +   + ++       +      + 
Sbjct: 5   IVLYQPEIPQNTGNIARTCVLTNSTLHLIKPMGFKIDDKQVKRAGLDYWSELKLEMHESY 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + ++K      +    ++      ++    +   ++ G E  G+  +    +     + 
Sbjct: 65  EEFMKKYGDK--RIFLATTHGGVHYDEVSFKEGDFIMFGRESSGVPEEV-HNSHEGIRVP 121

Query: 256 M-PGIIKALNVSNAAAVALYITQNHFA 281
           M     ++LN+SN  A+  Y       
Sbjct: 122 MIKTSTRSLNLSNTVAIVAYEALRQIG 148


>gi|166364610|ref|YP_001656883.1| tRNA/rRNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166086983|dbj|BAG01691.1| probable tRNA/rRNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 266

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 16/146 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKMHS 204
           N+G+  R         +I              + A   +E +    R++ L +ALQ  H 
Sbjct: 27  NVGSTARIMRNMGLSRLIIVNPACDILGEEARRMAVHGIEVLENCSRVATLGEALQGCH- 85

Query: 205 WGFQTIGLSSDSK---KPLEQ------EIKNDKI--ALILGAEGKGLRPKTQETATSMAH 253
              + I  +S  +    PLE        +    +  ALI G E +GL       A     
Sbjct: 86  ---RIIATTSKPRHLNTPLETPRAALPWLLTPNLESALIFGPEDRGLSNSELNHAQRFVG 142

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           +       +LN++ A AV  Y     
Sbjct: 143 IPANPQYSSLNLAQAVAVCSYELYQR 168


>gi|152981160|ref|YP_001352989.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
 gi|151281237|gb|ABR89647.1| tRNA/rRNA methyltransferase [Janthinobacterium sp. Marseille]
          Length = 253

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAK 178
           ++ P  D    ++L  +L   + P NIGA  R+        ++         +       
Sbjct: 1   MMQPQTDTPLFNRLRFILVETSRPGNIGAAARAIKNMGFTELVLVNPRFPDAALQEEAVA 60

Query: 179 SASGALEHIPYIR-ISNLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            ASGA + +   R + ++ +AL           ++  +    I  S  +      E    
Sbjct: 61  FASGAQDILQAARIVGSIEEALIDCNFAAAVTARLREFSPPVI--SPRALATRLVEETGL 118

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + A++ G E  GL  +  E    + ++       +LN++ A  V  Y  +
Sbjct: 119 RAAVVFGNERFGLPNEIVEKCNVLINISANPDYSSLNLAQAVQVLAYEAR 168


>gi|91763130|ref|ZP_01265094.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717543|gb|EAS84194.1| SpoU rRNA Methylase family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 237

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 12/139 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLT 196
           +L       NIGA  R+   F+   ++  K      +  +  ++ GA      I  + + 
Sbjct: 9   ILHQPQLSENIGACARALKNFNFKKLVIVKPKPIFPNDKILATSVGAK---NLIINAKVH 65

Query: 197 DALQKMHSWGFQTIGLSSDSK---------KPLEQEIKNDKIALILGAEGKGLRPKTQET 247
           + L+         I  S+  +           L++   N KIA + G+E  GL       
Sbjct: 66  ETLESAVKKVDCVIATSARFRNKNIKHINLDDLKKIDFNKKIAFLFGSEASGLSNNEISY 125

Query: 248 ATSMAHLHMPGIIKALNVS 266
           A     +      K+LN+S
Sbjct: 126 ANYTMQIPTNPDFKSLNLS 144


>gi|332006235|gb|AED93618.1| protein agamous-like 26 [Arabidopsis thaliana]
          Length = 368

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 29/160 (18%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVA------------FSCDGIITTKRYSPSESA 174
           +  R+  L +VL     P N G I R+  A            F  D     +        
Sbjct: 75  EDARSKLLHVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDARVKRAGLDYWPF 134

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILG 234
           V+ K+ S   E   Y R+      +      G +       S              L+ G
Sbjct: 135 VVVKAHSSWAEFQEYFRLQEGEKRMIAFTKRGTRI-----HSDFSYRSGDY-----LLFG 184

Query: 235 AEGKGLRPKTQETATS------MAHLHMPGI-IKALNVSN 267
           +E  GL P+                + M    ++ LN+S 
Sbjct: 185 SETSGLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSI 224


>gi|304396506|ref|ZP_07378387.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
 gi|304356015|gb|EFM20381.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
          Length = 245

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 14/153 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L     P NIGA  R+        +         +     + A GA + +      + 
Sbjct: 16  LILVSPARPENIGAAARAMKTMGFSQLRIV-ASDAWQDPAARRVAHGAGDILDNIQTFAT 74

Query: 195 LTDALQKM---------HSWGFQTIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L DAL  +             F+          + LE+    + +AL+ G E  GL  + 
Sbjct: 75  LADALADIDFSVATTARSRAKFRYYATPEQVETQLLEKRQWVNSMALVFGREDSGLTNEE 134

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            E    +  + M     +LN+  A  V +Y  Q
Sbjct: 135 LEQVDLLTGIPMANDYPSLNLGQA--VMVYCYQ 165


>gi|113461765|ref|YP_719834.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|112823808|gb|ABI25897.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
          Length = 161

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     +    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAQIKKHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            + L        +   L++       Q        L+ G E +G+     +    T    
Sbjct: 64  NEFLNT--EQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGIPMSILDNLPTTQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA AV +Y       
Sbjct: 122 IPMIENSRSMNLSNAVAVTVYEAWRQLN 149


>gi|113867235|ref|YP_725724.1| rRNA methyltransferase [Ralstonia eutropha H16]
 gi|113526011|emb|CAJ92356.1| rRNA methyltransferase [Ralstonia eutropha H16]
          Length = 299

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 17/156 (10%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYIRISN 194
           VL   + P N+G++ R+        ++            +     ASGA + +    I +
Sbjct: 53  VLVETSHPGNVGSVARAIKTMGFGSLVLVSPREPDVLRHSDAVAMASGADDVLAGALIVD 112

Query: 195 LTDALQKMHSWGFQTIGLSSD-------------SKKPLEQEIKNDKIALILGAEGKGLR 241
             DA   +          +               +++  +    +  +A + G E  GL 
Sbjct: 113 QVDA--ALAGAALTVAMTARHREFGPPRLLPRAAAERARQTLSGSGGVAFVFGNERYGLP 170

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  E   ++ H+       +LN++ A  +  Y  +
Sbjct: 171 NEVVERCNAVTHIPANPAYTSLNLAQAVQLIAYEMR 206


>gi|197251230|ref|YP_002148627.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214933|gb|ACH52330.1| RNA methyltransferase, TrmH family, group 2 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 157

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRLRRAGLDYHEFAAVQRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TS 250
              +        +   T G  + S    +         L+ G E +GL     +      
Sbjct: 64  AAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPKEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SN+ +V +Y       
Sbjct: 119 KIRIPMMPDSRSMNLSNSVSVVVYEAWRQLG 149


>gi|126696500|ref|YP_001091386.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9301]
 gi|126543543|gb|ABO17785.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 250

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 23/162 (14%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L ++L   N P N+G++ R    F  D +          S    K A    + + + R
Sbjct: 8   SNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEARKMALKGQKFLKHCR 67

Query: 192 ISNLTDALQKMHSWGF---QTIGLSSD----------SKKPLEQEIKNDK----IALILG 234
           +         +    F     +               S + +     + K    +A+I G
Sbjct: 68  V------FDDLQKAVFDCDLVLASCGRIDVNKDSFFVSSEDIFDWTLSFKKINNLAIIFG 121

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            E +GL       A    ++       +LN+S+A ++ LY  
Sbjct: 122 REDRGLTNNELLLANKTFNIPTSQDNPSLNLSHAVSIVLYEL 163


>gi|218247147|ref|YP_002372518.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|218167625|gb|ACK66362.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8801]
          Length = 243

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 7/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISN 194
           ++L     P N+G++ R     + + +I         S    + A   ++ +    R+S+
Sbjct: 8   IILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQAQRVSS 67

Query: 195 LTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRPKTQETA 248
           L +ALQ        T       S ++ K     +    +  ALI G E +GL  +    A
Sbjct: 68  LPEALQGCQRAIATTGRPRTSTSLETPKNALPWLLTPHLTSALIFGPEDRGLSNEELNYA 127

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                +       +LN++ + AV  Y    
Sbjct: 128 QRFVCIPSNSEYPSLNLAQSVAVCTYELYQ 157


>gi|53724519|ref|YP_104677.1| RNA methyltransferase [Burkholderia mallei ATCC 23344]
 gi|67640730|ref|ZP_00439526.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           GB8 horse 4]
 gi|76811046|ref|YP_332082.1| RNA methyltransferase [Burkholderia pseudomallei 1710b]
 gi|121598583|ref|YP_991525.1| RNA methyltransferase [Burkholderia mallei SAVP1]
 gi|124386186|ref|YP_001027401.1| RNA methyltransferase [Burkholderia mallei NCTC 10229]
 gi|126450821|ref|YP_001082366.1| RNA methyltransferase [Burkholderia mallei NCTC 10247]
 gi|167001964|ref|ZP_02267754.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           PRL-20]
 gi|167717915|ref|ZP_02401151.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei DM98]
 gi|167736934|ref|ZP_02409708.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 14]
 gi|167822559|ref|ZP_02454030.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 9]
 gi|167844142|ref|ZP_02469650.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei B7210]
 gi|167892647|ref|ZP_02480049.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 7894]
 gi|167909362|ref|ZP_02496453.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 112]
 gi|167917391|ref|ZP_02504482.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei BCC215]
 gi|217420146|ref|ZP_03451652.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 576]
 gi|226193732|ref|ZP_03789335.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|254174655|ref|ZP_04881316.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           ATCC 10399]
 gi|254187876|ref|ZP_04894388.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254201771|ref|ZP_04908135.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           FMH]
 gi|254207104|ref|ZP_04913455.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           JHU]
 gi|254259607|ref|ZP_04950661.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1710a]
 gi|254296007|ref|ZP_04963464.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 406e]
 gi|254357588|ref|ZP_04973862.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           2002721280]
 gi|313471793|sp|A3NR15|TRML_BURP0 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|52427942|gb|AAU48535.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           ATCC 23344]
 gi|76580499|gb|ABA49974.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1710b]
 gi|121227393|gb|ABM49911.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           SAVP1]
 gi|124294206|gb|ABN03475.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           NCTC 10229]
 gi|126243691|gb|ABO06784.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           NCTC 10247]
 gi|147747665|gb|EDK54741.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           FMH]
 gi|147752646|gb|EDK59712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           JHU]
 gi|148026652|gb|EDK84737.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           2002721280]
 gi|157805768|gb|EDO82938.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 406e]
 gi|157935556|gb|EDO91226.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160695700|gb|EDP85670.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           ATCC 10399]
 gi|217397450|gb|EEC37466.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 576]
 gi|225934310|gb|EEH30294.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|238521501|gb|EEP84952.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           GB8 horse 4]
 gi|243062290|gb|EES44476.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia mallei
           PRL-20]
 gi|254218296|gb|EET07680.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1710a]
          Length = 156

 Score = 55.8 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + GAE +GL P   +         
Sbjct: 64  DAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|257060219|ref|YP_003138107.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8802]
 gi|256590385|gb|ACV01272.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           8802]
          Length = 243

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 7/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISN 194
           ++L     P N+G++ R     + + +I         S    + A   ++ +    R+S+
Sbjct: 8   IILVEPAGPLNVGSVARVMKNMALERLILVNPQCDPLSEEAKRMAVHGIDVLEQAQRVSS 67

Query: 195 LTDALQKMHSWGFQT----IGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRPKTQETA 248
           L +ALQ        T       S ++ K     +    +  ALI G E +GL  +    A
Sbjct: 68  LPEALQGCQRAIATTGRPRTSTSLETPKNALPWLLTPHLTSALIFGPEDRGLSNEELNYA 127

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                +       +LN++ + AV  Y    
Sbjct: 128 QRFVCIPSNSEYPSLNLAQSVAVCTYELYQ 157


>gi|120402541|ref|YP_952370.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium vanbaalenii PYR-1]
 gi|119955359|gb|ABM12364.1| tRNA/rRNA methyltransferase (SpoU) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 154

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R      C+  +            L ++     +        +L  A   +   
Sbjct: 14  NTGNAIRMVAGTGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHPDLDSAWAAVTPA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +              L+ G E  GL   T      T+   + +    ++L
Sbjct: 74  --RVFAFTAHATASFADVAYRPGDVLMFGPEPTGLDAATLADPHITAQVRIPLLAGRRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAVA+Y     
Sbjct: 132 NLSNAAAVAVYEAWRQ 147


>gi|325272151|ref|ZP_08138582.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
 gi|324102714|gb|EGC00130.1| RNA methyltransferase [Pseudomonas sp. TJI-51]
          Length = 251

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA--SGALEHI-PYIRI 192
           +VL + + P NIG   R+        ++  +   P E   +  SA  SGA + +     +
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVQ---PKEFPAVDASARASGADDVLGNAQVV 63

Query: 193 SNLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +L  AL           +  S  +  IG     +K +      ++IAL+ G E  GL  
Sbjct: 64  DSLEQALVGCNLVMGTSARERSIPWPLIGPRECGEKAVVHASGGEEIALVFGREHAGLTN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +      H+       +LN++ A  V  Y  +
Sbjct: 124 EELQRCHFHVHIPSNPDFSSLNLAAAVQVLAYEVR 158


>gi|229592455|ref|YP_002874574.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           SBW25]
 gi|229364321|emb|CAY52068.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           SBW25]
          Length = 256

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL + + P NIG + R+        ++  +          A+++ GA + +   ++ + 
Sbjct: 7   VVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPRLFPHHEADARAS-GANDILEKAQVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGL 240
           L DAL   +      +G S+                 K +E+     +IAL+ G E  GL
Sbjct: 66  LEDALVGCN----LVLGTSARDRRIPWPLLDPRECGTKVVEEAAGGAEIALVFGREDSGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      H+       +LN+  A  V  Y  +
Sbjct: 122 TNEELQRCHYHVHIPSDPDFSSLNLGAAVQVLSYEVR 158


>gi|86159409|ref|YP_466194.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775920|gb|ABC82757.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 236

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 22/158 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +VL    +P N+GA+ R+   F  D   I     +  +    +A  A   L+    +R  
Sbjct: 7   LVLLRPRNPENLGAVARAMKNFGADDWAIAELGTHDFAAMRRVAVHAGELLDRPRLVRT- 65

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGKGLR 241
            L +A+          +G SS + K               +     + A++ G E  GL 
Sbjct: 66  -LDEAVADCA----WVVGTSSRAVKGKRRLPPAEVAREALERAAAGRTAIVFGDERSGLT 120

Query: 242 PKTQETATSMAHLHMPGIIK-ALNVSNAAAVALYITQN 278
                    ++ +   G  + +LN++ AA V LY  + 
Sbjct: 121 NDEVHRCHDLSAIP-AGEAQPSLNLAQAALVYLYELRK 157


>gi|134296089|ref|YP_001119824.1| RNA methyltransferase [Burkholderia vietnamiensis G4]
 gi|134139246|gb|ABO54989.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           vietnamiensis G4]
          Length = 276

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQSDPEAIAMASGADDVLAGAHVVP 90

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGL 240
            L DAL  +H     +I L++ +++                 ++    IAL+ G E  GL
Sbjct: 91  TLGDALSGVH----WSIALTARTREYGPPRLAPRAAAAQARAQVGAGDIALVFGNERTGL 146

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 147 ANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELRVAF 186


>gi|332289318|ref|YP_004420170.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
           UMN179]
 gi|330432214|gb|AEC17273.1| putative tRNA/rRNA methyltransferase YibK [Gallibacterium anatis
           UMN179]
          Length = 161

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E+       + 
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANCGFRLHLIHPLGFQWDDKRLRRSGLDYHEYTTIKHHQSY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
            + L+       +   L++       Q        L+ G E +G+      T        
Sbjct: 64  AEFLES--EQPKRLFALTTKGGPAHSQVKFQLGDYLMFGPETRGIPMAILNTMPIEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y       
Sbjct: 122 IPMCANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|167585363|ref|ZP_02377751.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia ubonensis
           Bu]
          Length = 156

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHPDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-AT-SMAH 253
              +        +    ++                 + G+E +GL     E  A      
Sbjct: 64  DAFVAAETPDPARMFAFTTRGSGRFHDHAFQPGDWFVFGSETRGLPAPLLERFANAQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|197123484|ref|YP_002135435.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196173333|gb|ACG74306.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 237

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 22/161 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + +VL    +P N+GA+ R+   F  D   I     +  +    +      A+     +
Sbjct: 4   PIRLVLLRPRNPENLGAVARAMKNFGADDWAIAELGTHDFAAMRRV------AVHAEELL 57

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGK 238
               L   L +  +     +G SS + K               +     + A++ G E  
Sbjct: 58  DRPRLVRTLDEAVADCAWVVGTSSRTVKGKRRLPPAEVAREALERAAAGRTAIVFGDERS 117

Query: 239 GLRPKTQETATSMAHLHMPGIIK-ALNVSNAAAVALYITQN 278
           GL          ++ +   G  + +LN++ AA V LY  + 
Sbjct: 118 GLTNDEVHRCHDLSAIP-AGEAQPSLNLAQAALVYLYELRK 157


>gi|313885338|ref|ZP_07819089.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619444|gb|EFR30882.1| RNA methyltransferase, TrmH family, group 2 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 175

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 8/142 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++  +L ++      ++  I   +    L  + 
Sbjct: 13  PANTGNISRTCAASNAPLHLIHPLGFSTDDKMLKRAGLDYWHNVEIIEHESFEAFLDYVG 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLR-PKTQETATSMAHLHMP- 257
                 I  S  + +   +       A     + G E  GL      E       + M  
Sbjct: 73  QRPMYLI--SKFAPRIYTEADLARNEADEQFFLFGKETTGLPLEFMLEHKQDCLRIPMND 130

Query: 258 GIIKALNVSNAAAVALYITQNH 279
             +++LN+SN   + L+     
Sbjct: 131 EHVRSLNLSNTVNIVLFEALRQ 152


>gi|186476154|ref|YP_001857624.1| RNA methyltransferase [Burkholderia phymatum STM815]
 gi|184192613|gb|ACC70578.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia phymatum
           STM815]
          Length = 276

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 14/145 (9%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSES-AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+         ++ + R +  ++       ASGA + +    +  
Sbjct: 33  VLVEPSHPGNVGAAARALKTMGFSRLVLVSPRVADVKNDPEAIAMASGADDVLASAHVVP 92

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L DAL           +   +G   +   + + +  E     D IAL+ G E  GL   
Sbjct: 93  TLADALSGASWSLALTARAREYGPPQLAPRAAATQAREHAAHGD-IALVFGNERTGLSND 151

Query: 244 TQETATSMAHLHMPGIIKALNVSNA 268
             E  +++AH+       +LN+S A
Sbjct: 152 DVERCSALAHIPANPAYSSLNLSQA 176


>gi|260914705|ref|ZP_05921170.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
 gi|260631209|gb|EEX49395.1| RNA methyltransferase [Pasteurella dagmatis ATCC 43325]
          Length = 158

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 47/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATS 250
              LQ       +   T G  + S+   E         L+ G E +G+         A  
Sbjct: 64  EAFLQSERPKRLFALTTKGTPAHSQVQFELGDY-----LMFGPESRGIPMSILNSLAAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SN+ AV +Y       
Sbjct: 119 KIRIPMTENSRSMNLSNSVAVTVYEAWRQLG 149


>gi|328479696|gb|EGF48853.1| RNA methyltransferase, TrmH family [Lactobacillus rhamnosus MTCC
           5462]
          Length = 37

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 18/31 (58%)

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALY 274
             +   +  ++ + G  ++LNV+ AAA+ ++
Sbjct: 2   LLKQTDTNLYIPIRGQAESLNVAVAAAIMMF 32


>gi|294630384|ref|ZP_06708944.1| LOW QUALITY PROTEIN: rRNA methylase [Streptomyces sp. e14]
 gi|292833717|gb|EFF92066.1| LOW QUALITY PROTEIN: rRNA methylase [Streptomyces sp. e14]
          Length = 251

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 19/186 (10%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNAL----ARLDWDANLPHPFPVKTVP 97
           H     ++ L G H +  A+   +     +   +         L  D        +  V 
Sbjct: 9   HRLAGTSVLLDGFHALKHAVRFGAEVPVAVAVDRRTALALADELAPDVRDALDALLTEVE 68

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHVNDPHNIGAILRSA 154
           P     +V +       AL   P     L A+ ++     ++VLD   +  N GA++R A
Sbjct: 69  PDVYASLVPRPHPTAVAALAVRPSREAGLRALAHTPRSAPVVVLDQPRNLGNAGAVIRLA 128

Query: 155 VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR--ISNLTDALQKMHSWGFQTIGL 212
             F   G++TT          + +  +G        R  ++ L D              L
Sbjct: 129 AGFGVTGVVTTGTL-DPWHPTVVRGGAGLHFATTVERLSVAELPDG---------PLFAL 178

Query: 213 SSDSKK 218
             + + 
Sbjct: 179 DPEGED 184


>gi|289192450|ref|YP_003458391.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
           FS406-22]
 gi|288938900|gb|ADC69655.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus sp.
           FS406-22]
          Length = 228

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 34/153 (22%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMH 203
            N+G+I R  + F  + +      S   +      A  A E +   +      +A++ + 
Sbjct: 14  GNVGSIARVMMNFGFEELRIVGDRS-IINNEAYMMAVHAREILDNAKFYKTFDEAIEDLD 72

Query: 204 SWGFQTIGLSS--DSKKPLEQEIKNDK------------IALILGAEGKGLRPKTQETAT 249
                 I  S      + L++     K            + ++ G E  GLR +  +   
Sbjct: 73  ----FVIATSGARGGDRNLKRVPITPKELADKILEVKGNVGIVFGREDDGLRNEEIDKCD 128

Query: 250 SMAHLH-------MPGIIKALNVSNAAAVALYI 275
            +  +        M       N+S+A AV LY 
Sbjct: 129 LLVSIPTSEKYPIM-------NLSHAVAVILYE 154


>gi|254470267|ref|ZP_05083671.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
           JE062]
 gi|211960578|gb|EEA95774.1| RNA methyltransferase, TrmH family, group 1 [Pseudovibrio sp.
           JE062]
          Length = 256

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 11/157 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
             ++VL       NIG + R+   F    +          S     ++S A   I   R+
Sbjct: 13  PPVVVLCEPQLGENIGMVARAMANFGLHDLRLINPRDGWPSEKARSASSRAHHVIDAARV 72

Query: 193 -SNLTDALQKMH--------SWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             ++ +A+  +         S       +G    + + + Q ++      + G E  GL 
Sbjct: 73  FDSVEEAVADLKLVFATTARSRDIPKPVVGPDEAANESVAQGLRGIPSGYLFGRERWGLN 132

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                 A  +  L +     +LN++ A  V  Y  + 
Sbjct: 133 NDEVALANKIVTLPVDPTYASLNIAQAVLVCAYEWRR 169


>gi|304415209|ref|ZP_07395920.1| putative RNA methyltransferase [Candidatus Regiella insecticola
           LSR1]
 gi|304282943|gb|EFL91395.1| putative RNA methyltransferase [Candidatus Regiella insecticola
           LSR1]
          Length = 260

 Score = 55.8 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 25/160 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS---ASGALEHIPYIR- 191
           ++L   + P NIG+  R+        +            + + +   A+GA   I   + 
Sbjct: 7   IILVEPSHPGNIGSAARAMKTMGLTELYL----VDPLEKIDSHTIALAAGASNVIDKAKI 62

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGK 238
           + NL  A+ +        IG S+ S+      +                 +AL+ G E  
Sbjct: 63  VDNLDQAVAECS----LIIGTSARSRTHAWPMLHPRECGVKSVSEAHFAPVALVFGRERS 118

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GL     +       +       +LN++ A  V  Y  +N
Sbjct: 119 GLTNHELQKCHFHVEIPTNPEYSSLNLAMAVQVIAYEIRN 158


>gi|46199124|ref|YP_004791.1| putative RNA methyltransferase [Thermus thermophilus HB27]
 gi|55981151|ref|YP_144448.1| hypothetical protein TTHA1182 [Thermus thermophilus HB8]
 gi|46196748|gb|AAS81164.1| putative RNA methyltransferase [Thermus thermophilus HB27]
 gi|55772564|dbj|BAD71005.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 244

 Score = 55.8 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 24/165 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL    +P N+GA+ R+   F       ++ Y  +    +    +     +       L
Sbjct: 6   IVLVEPQEPMNLGAVARAMRNFG-----LSRLYVVNPPPRVGPPWAKEAYWLAVHAEEVL 60

Query: 196 TDA------LQKMHSWGFQTIGLSSDSKKPLEQ------------EIKNDKIALILGAEG 237
             A      L+ +       +  +   ++                     ++AL+ G E 
Sbjct: 61  EKAQVAGSLLEALRGAQL-VVATTGRPREVYPAPVAPAWEVADRVAAFPGEVALVFGRET 119

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            GL  +  E A  + ++       +LN++ A  V  Y       K
Sbjct: 120 FGLTNEELELAHLIGYIPTAPEQPSLNLAQAVVVFAYELFKRQGK 164


>gi|227356228|ref|ZP_03840617.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|227163692|gb|EEI48608.1| rRNA methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 242

 Score = 55.4 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHIPYIRIS 193
           ++L   +   N+G+   +A A    G+      +P E         ++GA      I  +
Sbjct: 7   IILVETSHTGNMGS---TARAMKTMGLTNLYFVNPKEKPDSHSIALSAGAS---DVIGNA 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGL 240
           ++ D +          IG S+ ++                 +E  N  +A+I G E  GL
Sbjct: 61  HIVDTIDDAIEGCGLVIGTSARNRTLSWPMLAPRECGERCVKEAANKPVAVIFGRERTGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      ++       +LN++ A  +  Y  +
Sbjct: 121 TNEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIR 157


>gi|53718088|ref|YP_107074.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei
           K96243]
 gi|167814039|ref|ZP_02445719.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 91]
 gi|167901142|ref|ZP_02488347.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei NCTC 13177]
 gi|254181943|ref|ZP_04888540.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1655]
 gi|254196458|ref|ZP_04902882.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei S13]
 gi|52208502|emb|CAH34437.1| SpoU rRNA methylase family protein [Burkholderia pseudomallei
           K96243]
 gi|169653201|gb|EDS85894.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei S13]
 gi|184212481|gb|EDU09524.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1655]
          Length = 156

 Score = 55.4 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + GAE +GL P   +         
Sbjct: 64  DAFVAAEAPDPARMFAFTTRGSGRFHDRSFEPGDWFVFGAETRGLAPALVDRFAPEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|126439427|ref|YP_001057538.1| RNA methyltransferase [Burkholderia pseudomallei 668]
 gi|237810689|ref|YP_002895140.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei MSHR346]
 gi|126218920|gb|ABN82426.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 668]
 gi|237504756|gb|ACQ97074.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei MSHR346]
          Length = 179

 Score = 55.4 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 27  VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 86

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + GAE +GL P   +         
Sbjct: 87  DAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVR 146

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 147 LPMRPGNRSLNLSNTVAVVVFEAWRQ 172


>gi|325981240|ref|YP_004293642.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
 gi|325530759|gb|ADZ25480.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas sp.
           AL212]
          Length = 241

 Score = 55.4 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L H + P NIGA  R+        +      +  +     ++ S           + L
Sbjct: 12  IILSHTSHPGNIGAAARAMKTMGLSSLYLINPKTFPDKEADVRAVSARDILEKIRVCTTL 71

Query: 196 TDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLRP 242
            +AL         T  +++                + L +  +   +AL+ G E  GL  
Sbjct: 72  DEALD----NTVLTAAMTARPRDLSHDVFNARQGARELLRYARQHPVALLFGTETSGLTT 127

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                   + H+       +LN+++A  V  Y  +
Sbjct: 128 AEVSKCQMIIHIPANPEFTSLNLASAVQVMTYELR 162


>gi|257076123|ref|ZP_05570484.1| rRNA methylase [Ferroplasma acidarmanus fer1]
          Length = 236

 Score = 55.4 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 38/154 (24%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA+ RS        +   K  +P E+  + +S  G         I +       +  
Sbjct: 19  GNIGAVARSMANSGISDLRIVK--TPIETEAIYRSMHG-------RYILDNAKIFNSLKE 69

Query: 205 W--GFQTIGLSSDSKKPLEQE---------------IKNDKIALILGAEGKGLRPKTQET 247
              GF+ I  +SD  K  E+                +   K+AL+ G E  GL  +    
Sbjct: 70  AVSGFEIIAGTSDISKSGEKFRRVPTGPEEFWSTNGLTGQKVALVFGREDNGLNYEELGM 129

Query: 248 ATSMAHL------HMPGIIKALNVSNAAAVALYI 275
                 +       +       N+S+A A+ LY 
Sbjct: 130 CNFFLKIIGNPEYPVY------NLSHAVAIILYE 157


>gi|219668434|ref|YP_002458869.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
 gi|219538694|gb|ACL20433.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
           DCB-2]
          Length = 155

 Score = 55.4 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L +VL     P N G + R   A      +            L ++     + +    
Sbjct: 2   AHLNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFEISDKHLKRAGLDYWDMLDIHI 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             N  +   +  +        ++ +++            ++ G E KGL P+       +
Sbjct: 62  YENYAEF--EAKNPQGPRYLATTKAQRLHTDIHYQQGGYILFGKETKGLSPEILARYPET 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              L M    ++LN+SN+ AV +Y     + 
Sbjct: 120 TLRLPMRADARSLNLSNSVAVVVYEALRQWG 150


>gi|300311053|ref|YP_003775145.1| tRNA/rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073838|gb|ADJ63237.1| tRNA/rRNA methyltransferase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 275

 Score = 55.4 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 15/159 (9%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPY 189
           S+L  VL + + P NIG+  R+        ++      P           ASGAL+ +  
Sbjct: 12  SRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAVAFASGALDVLQN 71

Query: 190 IR-ISNLTDALQ----------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            R + ++ +ALQ          ++  +    +     + +       N   AL+ G E  
Sbjct: 72  ARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNA--ALLFGNERF 129

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +  +   ++ ++       +LN+S A  V  Y  +
Sbjct: 130 GLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECR 168


>gi|58582333|ref|YP_201349.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426927|gb|AAW75964.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 304

 Score = 55.4 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL     P NIGA  R+         ++     +        + ++GA      +  + +
Sbjct: 60  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAE---DVLSEAPI 114

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L +  +     IG ++ +++   +E+  D+              +A + G E  GL 
Sbjct: 115 FATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLT 174

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +  H+       +LN++ A  V  Y  +
Sbjct: 175 NDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 210


>gi|49474226|ref|YP_032268.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
 gi|49239730|emb|CAF26112.1| RNA methyltransferase [Bartonella quintana str. Toulouse]
          Length = 278

 Score = 55.4 bits (133), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           +++L     P NIG + R+   F    +   K      +     +AS A   I   +   
Sbjct: 16  IIILVEPQLPDNIGMVARAMANFGLSKLRLVKPREEFPNDKARAAASKADHVINDAVIFD 75

Query: 194 NLTDALQKMH---------SWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243
            L DA+  +H           GF+T+  + ++   L Q E    +  ++ G E  GL   
Sbjct: 76  TLHDAIADLHYVFATTARERCGFKTVKSAVEAASMLRQRENIGHRTGIVFGRERWGLENY 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  +    +     +LN++ A  V L
Sbjct: 136 EISLVDEIITFPVNPAFASLNIAQA--VLL 163


>gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040581|gb|ACT57377.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 268

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 21/168 (12%)

Query: 120 PLLSPTLDAVRNSQLLMVLDHVNDPH---NIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           P      ++ +   +++V     DP    NIG + R+   F+   +          S   
Sbjct: 3   PYAPQLQNSAKGPVIILV-----DPQLGENIGMVARAMWNFNLTQLRLVNPRDGWPSEKA 57

Query: 177 AKSASGALEHIPYIRI-SNLTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKN 226
             S++ A   I  +R+ SNL +A+  +H            F+++    ++   L + I +
Sbjct: 58  RSSSANADCVIDSVRVFSNLKEAIADLHFIYATTARNRNNFKSVLAPKEAAIVLNERIFS 117

Query: 227 D-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
              + +I G E  GL  +    + ++    +  +  +LN+S A  V L
Sbjct: 118 GQNVGIIFGRERWGLTNEEIALSNAIISFPVNPLFPSLNISQA--VLL 163


>gi|220936435|ref|YP_002515334.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219997745|gb|ACL74347.1| RNA methyltransferase, TrmH family, group 2 [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 157

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 4/136 (2%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        + + L ++     +        +L      +   
Sbjct: 14  NTGNIMRLCANTGCRLHLIHPLGFSLDESKLKRAGLDYRDMAQVAEYDSLAAFTSAVAPE 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKAL 263
             +   L++ +  P            + G E +GL  +  +         + M    ++L
Sbjct: 74  --RMFALTTRASLPHSAPAFRPGDTFLFGPETRGLPMEILDGLPEDRRLRIPMVPGSRSL 131

Query: 264 NVSNAAAVALYITQNH 279
           N+SNAAAV +Y     
Sbjct: 132 NLSNAAAVMVYEAWRQ 147


>gi|85861011|ref|YP_463213.1| rRNA methylase [Syntrophus aciditrophicus SB]
 gi|85724102|gb|ABC79045.1| rRNA methylase, spoU family [Syntrophus aciditrophicus SB]
          Length = 263

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 22/159 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIR 191
            + +VL+H     NIG+  R A     + +I        +  +   S   A + +   + 
Sbjct: 20  HIAVVLNHPKYAGNIGSAARCAKNMGIERLIVVSDREYRQEEIRQMSTHLAADVVDSIVY 79

Query: 192 ISNLTDALQKMHSWGF-QTIGLSSD--------------SKKPLEQEIKNDKIALILGAE 236
             +L +AL      GF   +G ++               +++ +E    N+ +AL+ G E
Sbjct: 80  FRDLGEAL-----SGFNYIVGTTARLGLARGPVVSPREMAEQVIEISRDNE-VALLFGPE 133

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             GL         ++  +      ++LN+S+A  +  Y 
Sbjct: 134 DTGLTNDDLRYCHTVVSIPTSERFRSLNLSHAVMILCYE 172


>gi|59712952|ref|YP_205728.1| rRNA methylase [Vibrio fischeri ES114]
 gi|59481053|gb|AAW86840.1| predicted rRNA methylase [Vibrio fischeri ES114]
          Length = 159

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R +     +  +        E   L ++     +     R  N    L+ + + 
Sbjct: 14  NTGNIIRLSANCGANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKNYAAFLEYLAND 73

Query: 206 G---FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
                +    ++ +              L+ G E +GL     +         + M    
Sbjct: 74  SDVEHRIFACTTKTTGHHTTPTYQKGDVLLFGPETRGLPADLIDGLPMEQRVRIPMMPDS 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SN+ A+ ++       
Sbjct: 134 RSLNLSNSVAIIVFEAWRQMG 154


>gi|330831579|ref|YP_004394531.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328806715|gb|AEB51914.1| RNA methyltransferase, TrmH family, group 2 [Aeromonas veronii
           B565]
          Length = 154

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   + ++     E     R  + 
Sbjct: 4   IVLYQPEIPPNTGNIIRLCANTGYRLHLIEPLGFEWDDKRVKRAGLDYHEFAEVKRWPSY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L  +     +    ++  +            AL+ G E +GL  +  E+        
Sbjct: 64  EAFLAAVAPK--RVFACTTKGRTAHSAAQYALGDALLFGPESRGLPIEIIESLPFEQRLR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA +V +Y +     
Sbjct: 122 IPMVPQSRSMNLSNAVSVFVYESWRQLG 149


>gi|259906785|ref|YP_002647141.1| putative tRNA/rRNA methyltransferase YibK [Erwinia pyrifoliae
           Ep1/96]
 gi|224962407|emb|CAX53862.1| rRNA methyltransferase CspR (SpoU class) [Erwinia pyrifoliae
           Ep1/96]
 gi|283476571|emb|CAY72399.1| putative tRNA/rRNA methyltransferase [Erwinia pyrifoliae DSM 12163]
 gi|310765995|gb|ADP10945.1| putative tRNA/rRNA methyltransferase YibK [Erwinia sp. Ejp617]
          Length = 156

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 14/152 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-----GALEHIPYI 190
           +VL     P N G I+R          +        +   L ++        A+ H    
Sbjct: 3   IVLFEPEIPPNTGNIIRLCANTGFQLHVIEPLGFAWDDKRLRRAGLDYHEFAAIRHHASY 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--A 248
                ++A Q++  +   T G  + S    +         L+ G E +GL  +  +   A
Sbjct: 63  EAFAASEAPQRL--FALTTKGTPAHSAVSFQAGDY-----LLFGPETRGLPARVLDALPA 115

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                + M    +++N+SNA +V +Y      
Sbjct: 116 QQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQL 147


>gi|89894053|ref|YP_517540.1| hypothetical protein DSY1307 [Desulfitobacterium hafniense Y51]
 gi|89333501|dbj|BAE83096.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 155

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L +VL     P N G + R   A      +            L ++     + +    
Sbjct: 2   AHLNIVLVEPEIPPNTGNVARLCAATGAALHLVKPLGFEISDKHLKRAGLDYWDMLDIHI 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
             N  +   +  +        ++ +++            ++ G E KGL P+       +
Sbjct: 62  YENYAEF--EAKNPQGPRYLATTKAQRLHTDIHYQQGGYILFGKETKGLSPEILARYPET 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              L M    ++LN+SN+ AV +Y     + 
Sbjct: 120 TLRLPMRADARSLNLSNSVAVVVYEALRQWG 150


>gi|295837726|ref|ZP_06824659.1| rRNA methylase [Streptomyces sp. SPB74]
 gi|295826638|gb|EFG64950.1| rRNA methylase [Streptomyces sp. SPB74]
          Length = 190

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 11/154 (7%)

Query: 44  SQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKT------VP 97
              + + L G H +  AL   +     L   ++  A L   A L      +       VP
Sbjct: 31  QGADMVLLDGFHALKHALRFGADVP--LAVAEDRPAALALAAELAPDLAPRLAGLLVPVP 88

Query: 98  PQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAF 157
           P     +V       G+A   A   +      R S L +VLD   +  N GA++R A  F
Sbjct: 89  PALYRSLV-PRPHPTGVAALAARPPAAGFTGPRTSPL-LVLDEPRNLGNTGAVIRLAAGF 146

Query: 158 SCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              G++TT            ++ +G    +P  R
Sbjct: 147 GASGVVTTGAL-DPWHPAAVRAGAGLHFALPVAR 179


>gi|118602504|ref|YP_903719.1| RNA methyltransferase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567443|gb|ABL02248.1| RNA methyltransferase, TrmH family, group 1 [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 243

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 19/158 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +V+ +  +P NIGA  R+    S   +          SA+    ASGA + +   +   +
Sbjct: 10  VVMVNTTEPGNIGAAARAMKNMSLSYLYLVNPKGYP-SAIATARASGADDVLSNAVVCES 68

Query: 195 LTDALQ--------KMHSWGFQ-----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           L +ALQ               +      +G  S+ +K +  E  + K+A+I G E  GL 
Sbjct: 69  LKEALQGVYLVIGASARQRNIKWRQMDVVGACSEIQKTIMAE--SQKVAVIFGTERTGLT 126

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +  +    +  +       +LNV  A+A+ ++  QN+
Sbjct: 127 NEELDLCQILMTIPGNSHYFSLNV--ASAIQVFAYQNY 162


>gi|78067649|ref|YP_370418.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383]
 gi|77968394|gb|ABB09774.1| RNA methyltransferase TrmH, group 2 [Burkholderia sp. 383]
          Length = 156

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + G+E +GL  +  E         
Sbjct: 64  DAFVAAETPDPARMFAFTTRGSGRFHDHAFLPGDWFVFGSETRGLPAELLERFPNEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPDNRSLNLSNTVAVVVFEAWRQ 149


>gi|254719254|ref|ZP_05181065.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|256369620|ref|YP_003107130.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
           4915]
 gi|265984253|ref|ZP_06096988.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306838004|ref|ZP_07470862.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
 gi|255999782|gb|ACU48181.1| RNA methyltransferase, TrmH family, group 1 [Brucella microti CCM
           4915]
 gi|264662845|gb|EEZ33106.1| RNA methyltransferase [Brucella sp. 83/13]
 gi|306406928|gb|EFM63149.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. NF 2653]
          Length = 276

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L +   P NIG + R+   F    +          S     +AS A   I   +   +
Sbjct: 17  IILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYDD 76

Query: 195 LTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKT 244
           L  A+  ++           GF+ +  + ++   L +  K   K  ++ G E  GL  + 
Sbjct: 77  LPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFGLSNEE 136

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A  +    +     +LN++ A  V L
Sbjct: 137 VGLADELVTFPVNPAFASLNIAQA--VLL 163


>gi|172061034|ref|YP_001808686.1| RNA methyltransferase [Burkholderia ambifaria MC40-6]
 gi|171993551|gb|ACB64470.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MC40-6]
          Length = 273

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 14/157 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQDDPEAIAMASGADDVLASAHVVP 90

Query: 194 NLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
            L DAL           +   +G   +   + +++   Q    D IAL+ G E  GL  +
Sbjct: 91  TLGDALSGVHWSIALTARTREYGPPRLAPRAAAEQACMQVGAGD-IALVFGNERTGLANE 149

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 150 HVEQCSALAHIPANPAYSSLNLAQAIQVLAYELRVAF 186


>gi|117919921|ref|YP_869113.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3]
 gi|117612253|gb|ABK47707.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. ANA-3]
          Length = 202

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 16/144 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           P N+G I+R++  +  D +  T +   Y+             A E IP   +++L DAL 
Sbjct: 31  PTNVGGIMRASGCYGVDAVFYTGKRYEYAARGPQQYNADTQSAAERIPLTGVASLLDALP 90

Query: 201 KMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPG 258
                  + + +       PL + +  +K   + G E  G +  +  + A ++ ++   G
Sbjct: 91  ----SDTKLVCVDLVLGATPLPEFVHPEKAFYVFGPE-DGTIGQEIIDRADAVVYVPTVG 145

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            +   N++ +  V LY   +  AK
Sbjct: 146 CM---NLAASVNVLLY---DRLAK 163


>gi|171320744|ref|ZP_02909755.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MEX-5]
 gi|171094009|gb|EDT39111.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia ambifaria
           MEX-5]
          Length = 273

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+        ++      P           ASGA + +    +  
Sbjct: 31  VLVEPSHPGNVGAAARALKTMGFSRLVLVAPRVPHVQDDPDAIAMASGADDVLASAHVVP 90

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKP----------LEQE---IKNDKIALILGAEGKGL 240
            L DAL  +H     +I L++ +++            EQ    +    IAL+ G E  GL
Sbjct: 91  TLGDALSGVH----WSIALTARTREYGPPRLAPRAAAEQACMQVGTGDIALVFGNERTGL 146

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             +  E  +++AH+       +LN++ A  V  Y  +  F
Sbjct: 147 ANEHVEQCSALAHIPANPAYSSLNLAQAIQVLAYELRVAF 186


>gi|146297844|ref|YP_001192435.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
 gi|146152262|gb|ABQ03116.1| tRNA/rRNA methyltransferase (SpoU) [Flavobacterium johnsoniae
           UW101]
          Length = 151

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 1/135 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R  V       +            L +S      H+      N+
Sbjct: 4   VVLVEPEIPNNTGNIGRLCVGTESRLHLIHPFGFVINDKNLKRSGLDYWVHLDVTEYQNV 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            + +Q++     +   +SS S+K   +    D   L+ G E  GL         +   + 
Sbjct: 64  EEWIQQIPDHS-RVFLMSSHSEKSYLENEFQDGDWLVFGKESVGLSAAFMARFENHLTIP 122

Query: 256 MPGIIKALNVSNAAA 270
           M  +I++ N++N+ A
Sbjct: 123 MSPLIRSFNIANSVA 137


>gi|119898311|ref|YP_933524.1| RNA methyltransferase [Azoarcus sp. BH72]
 gi|119670724|emb|CAL94637.1| RNA methyltransferase, TrmH family, group 1 [Azoarcus sp. BH72]
          Length = 242

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 23/158 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   + P NIGA  R+        +      S  +  V    ASGA + +   R+  +
Sbjct: 12  IVLSRTSHPGNIGAAARAMKTMGLSQLWLVAPESFPD-PVADARASGADDLLRNARVVGS 70

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK---------------PLEQEIKNDKIALILGAEGKG 239
           L +AL          +  +  +++                L +  +   +AL+ G E  G
Sbjct: 71  LAEALA------GTVLAAAVTARRRELALPRRDARAAAVELLRFAEQGDVALVFGNETSG 124

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +          +       +LN+  A  +  Y  +
Sbjct: 125 LSNEDVLLCGMPVSIPANPAFSSLNLGAAVQLLCYEMR 162


>gi|104773701|ref|YP_618681.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116513698|ref|YP_812604.1| rRNA methylase (SpoU class) [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422782|emb|CAI97421.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116093013|gb|ABJ58166.1| Predicted rRNA methylase (SpoU class) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 185

 Score = 55.4 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        +   L ++       +   R  +L
Sbjct: 5   IVLFEPEIPDNTGNIARTCAGTNTVLDLIEPLGFRLDDKHLKRAVLDYGGEVEIRRHDDL 64

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L  +  ++  +     SS     ++   ++     + G E  GL     ++ A    
Sbjct: 65  RAFLATLPDNAEMYLISKFSSKVYTDVDYTDESKDYYFVFGRETTGLPETFMRQYADRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+A N+SN+AA+ ++     
Sbjct: 125 RIPMSDKIRAFNLSNSAAIVIFEALRQ 151


>gi|67459188|ref|YP_246812.1| rRNA methylase [Rickettsia felis URRWXCal2]
 gi|67004721|gb|AAY61647.1| rRNA methylases [Rickettsia felis URRWXCal2]
          Length = 133

 Score = 55.4 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 14/132 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCD-GIITTKRYSPSES-------AVLAKSASGALE 185
           ++ V+++ ++  NIG I+R+  A   +   I T +    ++         L   +  A++
Sbjct: 1   MIAVIENPDNIKNIGTIIRNVNALGIEKAYIVTNQKLLPDTWEEMRTEPKLNAISVSAIK 60

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP----LEQEIKND--KIALILGAEGKG 239
                   +    ++ +    F ++  S   K      L +       K+A+  G EG G
Sbjct: 61  WSFVKIFKDTNSCMEHLEKESFVSVITSPHMKGYKNVVLHEHDYTKYKKLAVWFGNEGVG 120

Query: 240 LRPKTQETATSM 251
           +     E ++ +
Sbjct: 121 ISKPAVERSSFL 132


>gi|158334964|ref|YP_001516136.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158305205|gb|ABW26822.1| RNA methyltransferase, TrmH family, group 1 [Acaryochloris marina
           MBIC11017]
          Length = 250

 Score = 55.4 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 22/167 (13%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
             R + + +VL     P N+G+I R         ++  K +         + +  A++ +
Sbjct: 3   EPRLASIKIVLVEPAGPLNVGSIARVMKNMGLGQLVLVKPHCNPLGPEAKQMSVHAVDVL 62

Query: 188 PYIR-ISNLTDALQKMHSWGFQTIGLSS---------DSKKPLEQEIKNDKIALILGAEG 237
              + +  L++AL        + +  ++          + K +   I   + ALI G E 
Sbjct: 63  YQAKTVQTLSEALVGCQ----RVVATTARQRRLQVVTQAPKQILPWILEGEAALIFGPED 118

Query: 238 KGLRPKTQETATSMAHLHMPGIIKA----LNVSNAAAVALYITQNHF 280
           +GL  +    A +   +       +    LN++ A  +  Y  +   
Sbjct: 119 RGLSNEELYHAQAFLQIP----TSSDYAALNLAQAVTICCYELRQCL 161


>gi|309361011|emb|CAP30410.2| hypothetical protein CBG_11218 [Caenorhabditis briggsae AF16]
          Length = 1258

 Score = 55.4 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 3/100 (3%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIPYIR 191
             L++V   V+ P+N+G I R++  F  D ++        +S       +S   ++I  ++
Sbjct: 1142 SLIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDSNFKALSMSSENWQNIEAVK 1201

Query: 192  ISNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKI 229
             +NL + LQ + + G+  I    ++DS    +      K 
Sbjct: 1202 RANLLEYLQGLRANGYTVIAAEQTTDSVMMHDFVFPKKKC 1241


>gi|227830363|ref|YP_002832143.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.S.2.15]
 gi|229579181|ref|YP_002837579.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.G.57.14]
 gi|229582067|ref|YP_002840466.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.N.15.51]
 gi|284997869|ref|YP_003419636.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.D.8.5]
 gi|227456811|gb|ACP35498.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.S.2.15]
 gi|228009895|gb|ACP45657.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012783|gb|ACP48544.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           Y.N.15.51]
 gi|284445764|gb|ADB87266.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           L.D.8.5]
          Length = 237

 Score = 55.4 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 25/156 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL      +NIG + R    FS D +      +    +   K ++G  E +   + ++N
Sbjct: 4   VVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRA--NVSEAFKFSAGGKEFLEKAKIVNN 61

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP------------LEQEIKNDKIALILGAEGKGLRP 242
             +A+  +       I  SS +               L   I+  K+AL+ G E  GL  
Sbjct: 62  FDEAINDVDIK----IATSSIADNNGDILRKSIRPWELLSLIQGKKVALVFGRESVGLTR 117

Query: 243 KTQETATSMAHLHMPGIIKA---LNVSNAAAVALYI 275
           +       + ++       +   LN+S+A  + LY 
Sbjct: 118 EEIFKCDFLLYIPANP---SYPVLNLSHAVGIVLYE 150


>gi|15920666|ref|NP_376335.1| hypothetical protein ST0454 [Sulfolobus tokodaii str. 7]
 gi|15621449|dbj|BAB65444.1| 227aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 227

 Score = 55.4 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 23/145 (15%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQ--KM 202
           N+G I R A  F  D +     +   E A   K ++  LE++   + ++N  +A++  ++
Sbjct: 14  NLGFISRLAKNFLVDELYIVNPHCDLEEAK--KFSAKGLEYLEKAKIVNNFDEAIKDVEL 71

Query: 203 HSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                  I  SS +               L + I+  K+ALI G E  GL  +    +  
Sbjct: 72  K------IATSSIADIKGDILRKSIRPWELPRIIEGKKVALIFGRESVGLTREEIAKSDL 125

Query: 251 MAHLHMPGIIKALNVSNAAAVALYI 275
           +  +        LN+S+A  + LY 
Sbjct: 126 LLFIPGNPEYPVLNLSHAVGIVLYE 150


>gi|325277915|ref|ZP_08143457.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51]
 gi|324096946|gb|EGB95250.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas sp. TJI-51]
          Length = 156

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+++R+A  +  + +  T +     +             IP I I +L   +    
Sbjct: 17  PENVGSVMRAAGCYGVNSVFYTGKRY-ERARDFVTDTKRVHYDIPLIGIDDLQRIIP--- 72

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G   + +   D  +PL +    D+   I G E   L  + +       ++   G +  
Sbjct: 73  -LGCTPVAVELVDGARPLPEYTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEGCM-- 129

Query: 263 LNVSNAAAVALYIT 276
            N++    V LY  
Sbjct: 130 -NLAATVNVVLYDR 142


>gi|289671293|ref|ZP_06492368.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 254

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL     P NIGA  R+         ++     +        + ++GA      +  + +
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAE---DVLGEAPI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L +  +     IG ++ +++ + +E+  D+              +A + G E  GL 
Sbjct: 65  FATLGEAVADCTLVIGCTARARRVVLEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLT 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +  H+       +LN++ A  V  Y  +
Sbjct: 125 NDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|162147983|ref|YP_001602444.1| cysteinyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786560|emb|CAP56142.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 711

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L       NIG   R+        +               +SASGA   +    + +
Sbjct: 471 VVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAATVHD 530

Query: 195 -LTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPK 243
            + DA+  +H             +T+  +      L Q      +  L+ G E  GL  +
Sbjct: 531 SVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGLDNE 590

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               A ++    +     +LN++ A  +  Y 
Sbjct: 591 DMARADALIRYPLNPAFMSLNLAQAVMIMAYE 622


>gi|72382535|ref|YP_291890.1| RNA methyltransferase [Prochlorococcus marinus str. NATL2A]
 gi|72002385|gb|AAZ58187.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           NATL2A]
          Length = 245

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 12/155 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  L ++L     P N+G++ R    FS   +          +    K A   L+ +   
Sbjct: 4   NKTLKVILVEPAGPINVGSVARLCENFSVHELRLVSPKCDYLAQEAKKMAVRGLKILEKA 63

Query: 191 RI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------KNDKIALILGAEGKG 239
           ++  +L  AL    S    T G     + PL              + D IAL+ G E +G
Sbjct: 64  KVYEDLNSALSDC-SRIIATCGRKEHGEIPLNSNKDALSWGLKSEREDTIALVFGREDRG 122

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L  +    A  +  L+      +LN+S+A A+ L+
Sbjct: 123 LSNEELLKANKVISLNTSEDYPSLNLSHAVAIVLH 157


>gi|260550634|ref|ZP_05824843.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
 gi|260406345|gb|EEW99828.1| RNA methyltransferase [Acinetobacter sp. RUH2624]
          Length = 279

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 28/161 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + +     +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKTYP-HPDIQALAAGAQDLLEQVEIVET 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDK-----------IALILGAEGKGL 240
           L DA++  H       G S+ S+    PL       K           IA++ G E +GL
Sbjct: 77  LEDAIKDCH----LVFGTSARSRTIPWPLLDVRPASKEAIKAASQGQQIAIVFGREDRGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKA----LNVSNAAAVALYITQ 277
             +    A     +     + +    LNV+ A  V  Y  +
Sbjct: 133 TNEELALANYHLTIP----VNSDYGVLNVAQAIQVVCYELR 169


>gi|303284060|ref|XP_003061321.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457672|gb|EEH54971.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 150

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 18/156 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A      +        E + L +  +G    +      + 
Sbjct: 1   VVLVSPQIPGNTGTIARTCAASRVPLHLVGPLGFTLEDSQLKR--AGLDYCVCVRVHDDW 58

Query: 196 TDALQ----KMHSWGFQT--IGLSSDSKK-PLEQEIKNDKIALILGAEGKGLRPKTQETA 248
                     + + G      G    +++             L+ GAE  GL  +  +  
Sbjct: 59  DAFYAYWSVDLGAPGRLVAKFGARPHAEEGAYLPGDW-----LLFGAETTGLPDEAHDAC 113

Query: 249 TS---MAHLHMPG-IIKALNVSNAAAVALYITQNHF 280
                +  + +    +++LN++ +A V +Y      
Sbjct: 114 ARSGGIRRIPIDEDHVRSLNLAVSAGVGVYEAIRQI 149


>gi|212712554|ref|ZP_03320682.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
           30120]
 gi|212684770|gb|EEB44298.1| hypothetical protein PROVALCAL_03649 [Providencia alcalifaciens DSM
           30120]
          Length = 167

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E        + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRAGLDYSEFADIKHHHDY 63

Query: 196 TDALQKMHSW--------GFQTIGLS-----SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L+             G +   L+     S S     ++       L+ G E +GL P
Sbjct: 64  YAFLESEGLNPDNNQSPTGARVFALTTKGKPSHSNVSYREDDY-----LMFGPETRGLPP 118

Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +         + M    +++N+SN+ AV ++ T     
Sbjct: 119 YVLDNMPIEQKIRIPMLAESRSMNLSNSVAVVVFETWRQLG 159


>gi|113969762|ref|YP_733555.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4]
 gi|114046991|ref|YP_737541.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7]
 gi|113884446|gb|ABI38498.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-4]
 gi|113888433|gb|ABI42484.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. MR-7]
          Length = 202

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 16/144 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           P N+G I+R++  +  D +  T +   Y+             A E IP   +++L DAL 
Sbjct: 31  PTNVGGIMRASGCYGVDAVFYTGKRYEYAARGPQQYNADTQSAAERIPLTGVASLLDALP 90

Query: 201 KMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPG 258
                  + + +       PL + +  +K   + G E  G +  +  + A ++ ++   G
Sbjct: 91  ----SDTKLVCVDLVLGATPLPEFVHPEKAFYVFGPE-DGTIGQEIIDRADAVVYVPTVG 145

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            +   N++ +  V LY   +  AK
Sbjct: 146 CM---NLAASVNVLLY---DRLAK 163


>gi|238854900|ref|ZP_04645230.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii
           269-3]
 gi|260664187|ref|ZP_05865040.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282931612|ref|ZP_06337105.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|313472397|ref|ZP_07812889.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|238832690|gb|EEQ24997.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus jensenii
           269-3]
 gi|239529739|gb|EEQ68740.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
 gi|260562073|gb|EEX28042.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281304223|gb|EFA96332.1| rRNA methylase [Lactobacillus jensenii 208-1]
          Length = 185

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM- 202
           P N G I R+         +        ++  + ++     + +   +  +L   L+ + 
Sbjct: 13  PANTGNIARTCAGTETVLDLIEPLGFQLDNKKMKRAGLDYWDKVEIHKHDDLKAFLETLG 72

Query: 203 -HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGII 260
            +   +     SS S   ++   +N     + G E  GL     +E       + M   I
Sbjct: 73  PNDEMYLISKFSSKSYTDVDYTDENKNYYFVFGKETTGLPETFMREYYDRNLRIPMSNHI 132

Query: 261 KALNVSNAAAVALYITQNH 279
           +A N+SN+AA+ +      
Sbjct: 133 RAYNLSNSAAMVIMEALRQ 151


>gi|197285717|ref|YP_002151589.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
 gi|194683204|emb|CAR43857.1| hypothetical tRNA/rRNA methyltransferase [Proteus mirabilis HI4320]
          Length = 242

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHIPYIRIS 193
           ++L   +   N+G+   +A A    G+      +P E         ++GA      I  +
Sbjct: 7   IILVETSHTGNMGS---TARAMKTMGLTNLYFVNPKEKPDSHSIALSAGAS---DVIGNA 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGL 240
           ++ + +          IG S+ ++                 +E  N  +A+I G E  GL
Sbjct: 61  HIVETIDDAIEGCGLVIGTSARNRTLSWPMLAPRECGERCVKEAANKPVAVIFGRERTGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +      ++       +LN++ A  +  Y  +
Sbjct: 121 TNEELQKCDYHLYIPTNPEYGSLNLAMAVQLVCYEIR 157


>gi|315125525|ref|YP_004067528.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315014038|gb|ADT67376.1| tRNA/rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 241

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 30/172 (17%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD +R     +VL + +   NIG+  R+        +            + + +++ A  
Sbjct: 3   LDDIR-----IVLVNTSHSGNIGSAARAMKTMGLSKLYL----VDPACEIDSHASALAAG 53

Query: 186 HIPY----IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-------------EIKNDK 228
                   + + ++ DA+         TIG S+ S+                  E  N  
Sbjct: 54  ATDVLGNAVIVDSVADAIADCA----LTIGTSARSRTLSWPMVEPRECGEKLVGEAVNGP 109

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +AL+ G E  GL  +  +       +       +LN++ A     Y T+  F
Sbjct: 110 VALVFGRENSGLTNEELQLCNYHVCIPANPEYSSLNLAMAVQTLCYETRMAF 161


>gi|209519808|ref|ZP_03268593.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
 gi|209499751|gb|EDZ99821.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia sp. H160]
          Length = 156

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P +   + ++     E+      ++ 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDTKMRRAGLDYHEYAEMNVHADW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA-T-SMAH 253
              + K      +    ++                 + GAE +GL     E         
Sbjct: 64  DAFIAKETPDPSRMFAFTTRGSGRFHDHAFQPGDWFVFGAETRGLPGAVLERFPDEQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|85060160|ref|YP_455862.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|84780680|dbj|BAE75457.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 155

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E        + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFHLHIIQPLGFTWDDKRLRRAGLDYHEFAAIRHHRDY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L +      +   L++  +             L+ G E +GL P   +    T    
Sbjct: 64  AAFLAQAQQA--RLFALTTKGQPAHSAVRYQAGDYLLFGPETRGLPPSILDALPMTQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    +++N+SNA +V +Y      
Sbjct: 122 IPMQPDSRSMNLSNAVSVVVYEAWRQL 148


>gi|325116844|emb|CBZ52397.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 453

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 31/148 (20%)

Query: 89  HPFPVKTVPPQTIDKIVGKEAVHQGLALETA-PLLSPTLDAVRNSQLLMVL--------- 138
                  V  + + K+ G  +   G   E   P  + +   VR   LL+ L         
Sbjct: 170 RGVETHFVTDRILRKVAGLHSYDGGCVAEMRHPAPAASFGDVR---LLLCLGRPPNSFCE 226

Query: 139 -----------DHVND------PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
                      +   D         +G ILRSA A    G+    +     + +  +++ 
Sbjct: 227 ADIGCGPSTSFEGDRDNLERATLGMLGTILRSAAALQWQGVWLLPQCPDVFNPLGIRASQ 286

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQT 209
           GAL  +PY R  +  + ++         
Sbjct: 287 GALFWLPYRR-GSWDEFVKFTTEQNLLI 313


>gi|262372308|ref|ZP_06065587.1| RNA methyltransferase [Acinetobacter junii SH205]
 gi|262312333|gb|EEY93418.1| RNA methyltransferase [Acinetobacter junii SH205]
          Length = 281

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 24/159 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +V+ +   P NIG+ LR+        +I     +      +   A+GA + I     +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLILVAPKTYP-HPDIDALAAGAQDLIEKIQIVDT 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK--------------PLEQEIKNDKIALILGAEGKGL 240
           L  A++  H       G S+ S+                L+    +  IA++ G E +GL
Sbjct: 77  LEQAIEDCH----LVFGTSARSRTIPWPLLDVRPAAQESLKAANLDQNIAIVFGREDRGL 132

Query: 241 RPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQ 277
             +    A     + +     +  LNV+ A  V  Y  +
Sbjct: 133 TNEELALANYHLTIPVNPSYGV--LNVAQAIQVVCYELR 169


>gi|253997035|ref|YP_003049099.1| TrmH family RNA methyltransferase [Methylotenera mobilis JLW8]
 gi|253983714|gb|ACT48572.1| RNA methyltransferase, TrmH family, group 1 [Methylotenera mobilis
           JLW8]
          Length = 247

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   + P NIG+  R+      + +         +       A+GA + +    + S+
Sbjct: 12  VVLCQTSHPGNIGSTARAMKTMGLNHLYLVNPLHFPD-PQATSLATGAADLLETATVCSS 70

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILGAEGKGLR 241
           L +AL          IG+S+  ++   + +             +N  IAL+ G E  GL 
Sbjct: 71  LQEALTGC----VLAIGMSARKRQISHELVNVREAAHRAASLAQNQPIALVFGTEMSGLS 126

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +    +A +       +LN++ A  V  Y  +
Sbjct: 127 NAELDCCQLLAMIPANPEYSSLNLAAAVQVMTYEIR 162


>gi|222056219|ref|YP_002538581.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
 gi|221565508|gb|ACM21480.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. FRC-32]
          Length = 251

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 21/159 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL     P NIG + R+        +         +     K A  A + +   R  ++
Sbjct: 15  IVLVGTQSPGNIGMVCRAMKNMGLYDLRLVNPCQV-DHPEAHKFAVSARDVLDGARLFTS 73

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGL 240
           L DA   +              K    QEI                 ++AL+ G E  GL
Sbjct: 74  LEDA---LRDCEISVATTRRHGK--YRQEISTPQEIAERVRSQAAMHRVALVFGREDSGL 128

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             +        + +       +LN++ A  +  Y     
Sbjct: 129 TTEEVALCRWQSTIPTADEYGSLNLAQAVLIFCYELHKR 167


>gi|126452601|ref|YP_001064786.1| RNA methyltransferase [Burkholderia pseudomallei 1106a]
 gi|134279430|ref|ZP_01766142.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 305]
 gi|242315209|ref|ZP_04814225.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1106b]
 gi|126226243|gb|ABN89783.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1106a]
 gi|134248630|gb|EBA48712.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 305]
 gi|242138448|gb|EES24850.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           pseudomallei 1106b]
          Length = 179

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 27  VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 86

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              +        +    ++                 + GAE +GL P   +         
Sbjct: 87  DAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVR 146

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 147 LPMRPGNRSLNLSNTVAVVVFEAWRQ 172


>gi|183597245|ref|ZP_02958738.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827]
 gi|188023560|gb|EDU61600.1| hypothetical protein PROSTU_00489 [Providencia stuartii ATCC 25827]
          Length = 167

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 26/164 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++    L++  +  I + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFSLHLIHPLGFTWDDKRLRRA---GLDYSEFADIKHH 60

Query: 196 TDALQKMHSWGF-----------QTIGLS-----SDSKKPLEQEIKNDKIALILGAEGKG 239
            D    + S G            +   L+     S S     Q+       L+ G E +G
Sbjct: 61  HDYYAFLDSEGLSPDNNQSASCARVFALTTKGKPSHSNVSYRQDDY-----LMFGPETRG 115

Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           L P   +         + M    +++N+SN+ AV ++       
Sbjct: 116 LPPYVLDNMPIEQKIRIPMLADSRSMNLSNSVAVVVFEAWRQLG 159


>gi|71281665|ref|YP_270768.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71147405|gb|AAZ27878.1| RNA methyltransferase, TrmH family [Colwellia psychrerythraea 34H]
          Length = 194

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 13/163 (7%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           + +  + + + L +   P N+GA++R+A  +  D II         +    K+      +
Sbjct: 9   NELNKAHVTIALTNPKTPTNVGAVIRAAGCYQADQIIYNGNRYAQAAKYHKKTLQTDTFN 68

Query: 187 ----IPYIRISNLTDALQKMHS--WGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
               IP +++ +       + S     + I +   +   PL   I   +   I G E   
Sbjct: 69  MQDKIPLLQVESFIGIKDSLESIPSSAKIICVDLVEGATPLPHFIHPPEAVYIFGPEDSS 128

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           ++ +  + A  + ++   G +   N++    V LY   +  AK
Sbjct: 129 VKQEVIDIADDVVYVPTVGCM---NLAATVNVLLY---DRLAK 165


>gi|297519775|ref|ZP_06938161.1| tRNA guanosine-2'-O-methyltransferase [Escherichia coli OP50]
          Length = 54

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           A R   L + ++ V+ PHN+ AI+R+A A     + 
Sbjct: 14  ARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVH 49


>gi|313126187|ref|YP_004036457.1| RNA methyltransferase, trmh family, group 1 [Halogeometricum
           borinquense DSM 11551]
 gi|312292552|gb|ADQ67012.1| RNA methyltransferase, TrmH family, group 1 [Halogeometricum
           borinquense DSM 11551]
          Length = 249

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 22/152 (14%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKM 202
           P N+G I R+   F    +                 A  A E + P        + +++ 
Sbjct: 17  PGNVGTIARAMKNFGLTDLKLVNPPPLEPDGEAYGFAGHAREDVLPNADEVTFDEVVEE- 75

Query: 203 HSWGFQTIGLSS----DSKKPLEQEIKND------------KIALILGAEGKGLRPKTQE 246
               + T+  ++    DS+K +    K              K AL+ G EG+GL      
Sbjct: 76  ----YHTVATTAITNEDSRKHVRFPYKTPVEVRESLETVETKTALVFGREGRGLNNDELA 131

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
               +  +        LN+  AA + +Y  ++
Sbjct: 132 RLDEICSIPASDDYPVLNLGQAATILMYELRS 163


>gi|84489842|ref|YP_448074.1| rRNA methylase [Methanosphaera stadtmanae DSM 3091]
 gi|84373161|gb|ABC57431.1| predicted rRNA methylase [Methanosphaera stadtmanae DSM 3091]
          Length = 238

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 32/152 (21%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMH 203
            NIG + R+   F    ++                A  A E +    I   L + ++   
Sbjct: 14  GNIGFLARTMKNFGLKKLVLINPC--KLENDAYYQAMHARELVQDAMIYDTLEEFIEDKK 71

Query: 204 SWGFQTIGLSSDSKKPLE--------QEIK-----NDKIALILGAEGKGLRPKTQETATS 250
                 +G +  +              E+      N  IAL+ G EG GL  +  E    
Sbjct: 72  IT--SIVGTTGTAGGSYNIKRIPITPDELGKTMHVNGNIALLFGREGDGLNNQEIEQCDI 129

Query: 251 MAHLH-------MPGIIKALNVSNAAAVALYI 275
           +  +        M       N+++AAA+  Y 
Sbjct: 130 LVTIPTSDEYPIM-------NITHAAAIIFYE 154


>gi|320354680|ref|YP_004196019.1| tRNA/rRNA methyltransferase SpoU [Desulfobulbus propionicus DSM
           2032]
 gi|320123182|gb|ADW18728.1| tRNA/rRNA methyltransferase (SpoU) [Desulfobulbus propionicus DSM
           2032]
          Length = 264

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-N 194
           ++L     P NIGA  R A  F    +I        +  +L  +   A   I  +R+   
Sbjct: 16  IILVGPKFPENIGASARIASNFGIAELIVVSEEDFDQERMLKMATHKAAHLIHGMRVCRT 75

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQE-------------IKNDKIALILGAEGKGLR 241
             +A    H      +G ++   +   Q+             +  +++ L+ G E  GL 
Sbjct: 76  TAEAAAPFH----FIVGTTARQGRHRPQDQTPREVMAEIVPLLAGNRVGLMFGPEDSGLS 131

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  +     + +   G   +LN++ A A+  Y  
Sbjct: 132 NEDLDLCQFASTIPTAG-FSSLNLAQAVAIHCYEL 165


>gi|167947103|ref|ZP_02534177.1| hypothetical protein Epers_11372 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 64

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +   G +++LNV+ AA+V ++      A
Sbjct: 25  CLSIPQFGQVESLNVAVAASVVMFEYVRQHA 55


>gi|315231328|ref|YP_004071764.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
 gi|315184356|gb|ADT84541.1| tRNA:Cm32/Um32 methyltransferase [Thermococcus barophilus MP]
          Length = 245

 Score = 55.0 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 46/157 (29%), Gaps = 31/157 (19%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG + R+   F    +I      P       K A  A + +   +I    D  + +   
Sbjct: 15  NIGFVARAMKNFDVKELILV--NPPELRGEAYKFAMHAKDVLENAKIVKTVD--EALKIV 70

Query: 206 GFQTIGLSSDSKKPLEQ-------------EIKNDKIALILGAEGKGLRPKTQETATSMA 252
                      K  L +              +   KI +  G E KGL  +  E      
Sbjct: 71  DVAVGTTGISGKVYLPERTPISPEEFAKRAFLYGGKIGIFFGRESKGLSNEELEKMDFTV 130

Query: 253 HLH-------MPGIIKALNVSNAAAVALYITQNHFAK 282
            +        M       N+S+A AV LY       K
Sbjct: 131 TIPTSEEYPVM-------NLSHAVAVVLYEIYKQRVK 160


>gi|260436456|ref|ZP_05790426.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
 gi|260414330|gb|EEX07626.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. WH 8109]
          Length = 248

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 25/164 (15%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRIS 193
           ++VL     P NIG++ R    F    +          S      A  G       + + 
Sbjct: 4   VVVLVEPAGPLNIGSVARLCANFGVSELRLVVPRCDHLSDEAMLMAVHGQALLQAAVVVP 63

Query: 194 NLTDALQKMHSWGFQTIGLSS---DSKKPLEQ---------------EIKNDKIALILGA 235
           +L  A+        + +G        + PL+                      +AL+ G 
Sbjct: 64  DLLTAINDCR----RIVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPVALVFGR 119

Query: 236 EGKGLRPKTQETATSMAHLHMPGII-KALNVSNAAAVALYITQN 278
           E +GL          +  L   G    +LN+S+A AV L+    
Sbjct: 120 EDRGLSNSELRLCQRVLCL-QSGEAYPSLNLSHAVAVVLHELAR 162


>gi|15669668|ref|NP_248481.1| hypothetical protein MJ_1476 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018437|sp|Q58871|Y1476_METJA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MJ1476
 gi|1592115|gb|AAB99481.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 230

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 32/152 (21%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G+I R  + F  + +      S   +      A  A E +   +  N  D  + +  
Sbjct: 16  GNVGSIARVMMNFGFEELRIVGDKS-IINNEAYMMAVHAREILDNAKFYNTFD--EAIGD 72

Query: 205 WGFQTIGLSS--DSKKPLEQEIKNDK------------IALILGAEGKGLRPKTQETATS 250
             F  I  S      + L++     K            I ++ G E  GLR +  +    
Sbjct: 73  LDF-VIATSGARGGDRNLKRVPITPKELADKILEVKGNIGIVFGREDDGLRNEEIDKCDL 131

Query: 251 MAHLH-------MPGIIKALNVSNAAAVALYI 275
           +  +        M       N+S+A AV LY 
Sbjct: 132 LVSIPTSEKYPIM-------NLSHAVAVILYE 156


>gi|255030658|ref|ZP_05302609.1| hypothetical protein LmonL_18963 [Listeria monocytogenes LO28]
          Length = 126

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 12/103 (11%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGL 240
            +++      +L +  +   + G +   ++   +        +D       + G E  GL
Sbjct: 10  WDNVKLSYYDSLDEFFE--KNEGGEFYYITKFGRHVYSDIDYSDTNKDYFFVFGKETTGL 67

Query: 241 RPKTQ----ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                    E       + M   I++LN+SN AA+  Y     
Sbjct: 68  PDALLQENEENC---LRIPMTDHIRSLNLSNTAAILAYEALRQ 107


>gi|170718519|ref|YP_001783729.1| RNA methyltransferase [Haemophilus somnus 2336]
 gi|168826648|gb|ACA32019.1| RNA methyltransferase, TrmH family, group 2 [Haemophilus somnus
           2336]
          Length = 161

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     +    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAQIKKHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
            + L        +   L++       Q        L+ G E +G+     +    T    
Sbjct: 64  NEFLNT--EQPNRLFALTTKGTPAHSQVNFELGDYLMFGPETRGIPMPILDNLPTTQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SNA AV +Y       
Sbjct: 122 IPMIENSRSMNLSNAVAVTVYEAWRQLN 149


>gi|293363523|ref|ZP_06610279.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           alligatoris A21JP2]
 gi|292552872|gb|EFF41626.1| putative RNA methyltransferase, TrmH family, group 2 [Mycoplasma
           alligatoris A21JP2]
          Length = 175

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 12/144 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG-ALEHIPYIRISNLTDALQKMHS 204
           N G I+R+  A      I            L +  +G  L  I +    +  D   K  +
Sbjct: 14  NTGNIVRTCFALGAKLHIIKPISFDLHPKYLRRYGAGKVLSDINHEVHDSYKDFYNKYKN 73

Query: 205 WG---FQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKT----QETATSMAHLHM 256
                    GL + ++     +  K+ ++ L+ G E  G+         E       + M
Sbjct: 74  KNIYYITRYGLRTYTENNFKNEYDKHKEVWLMFGRESTGIDKSILQNNLENC---LRIPM 130

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
              ++++N++N+  +  +      
Sbjct: 131 VSEMRSINLANSVCILGFEVMRQL 154


>gi|160871876|ref|ZP_02062008.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
 gi|159120675|gb|EDP46013.1| RNA methyltransferase TrmH, group 1 [Rickettsiella grylli]
          Length = 239

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 16/163 (9%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           SQL +VL     P NIGA  R+        +      S        +++         I 
Sbjct: 4   SQLRIVLVKTTCPGNIGATARAMKTMGLKQLYLVAPQSFPHINASVRASHAIDILADAIV 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKG 239
           +  L +AL           G S+  ++     +               KIA++ G E  G
Sbjct: 64  VDQLEEALGDCQ----LVFGTSTRVREFNWVSLTPRVAAEKIMNHCQQKIAILFGQERCG 119

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L  K  +       +       +LN++ A  +  Y  +N F +
Sbjct: 120 LTNKELQRCHFQMTIPANPEYNSLNLAAAVQIVCYELRNAFLQ 162


>gi|317154690|ref|YP_004122738.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio aespoeensis Aspo-2]
 gi|316944941|gb|ADU63992.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 248

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 23/160 (14%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++L     P NIG+  R+ +      +I         +  + K+   A  H  +I  
Sbjct: 4   DLAVILFRPKYPENIGSAARACLNMGVSRLII----VAPYNLDMDKARPLATAHARHIL- 58

Query: 193 SNLTDALQKMHSW--GFQ-TIGLSSD--------------SKKPLEQEIKNDKIALILGA 235
            +    ++ +     GF    G ++               +    E+     ++A++ G 
Sbjct: 59  -DSARVVETLAEAVEGFTSVYGTTARTGGWRKGIMSPTTLAGVVDERLRSGGRVAILFGP 117

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           E  GL        + +  +       +LN++ A  V LY 
Sbjct: 118 EDTGLTNDETSVCSGLMTIPTSREGTSLNLAQAVVVVLYE 157


>gi|170016981|ref|YP_001727900.1| rRNA methylase (SpoU class) [Leuconostoc citreum KM20]
 gi|169803838|gb|ACA82456.1| Predicted rRNA methylase (SpoU class) [Leuconostoc citreum KM20]
          Length = 170

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+         +        +   + ++     +H+  ++ ++L D L+ + 
Sbjct: 13  PANTGNIARTTAGTDAILHLIEPLGFELDDKHVKRAGLDYWDHVQLVKHASLPDFLETLT 72

Query: 204 SWG-FQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPG- 258
                  +    + D  +P   E + D    + G E  GL     ++       +     
Sbjct: 73  EKDHLYLVSKFANMDYTQPDYAESQGDHY-FLFGKETTGLPEVFMRQNPEKAIRIPQDDT 131

Query: 259 IIKALNVSNAAAVALYITQNH 279
            I++LN+SN  A+ LY     
Sbjct: 132 HIRSLNLSNTVAIVLYEALRQ 152


>gi|154273571|ref|XP_001537637.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415245|gb|EDN10598.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 114

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP---------GIIKALNVS 266
           S++ ++ ++      L+LG+E +GL+   ++ A  +  +              + +LNVS
Sbjct: 31  SRRDVKSKLNEAPCILMLGSEDQGLQKSVRQQADGVVVIPGAITSTGEEDRAGVDSLNVS 90

Query: 267 N 267
            
Sbjct: 91  V 91


>gi|197334706|ref|YP_002157141.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11]
 gi|197316196|gb|ACH65643.1| RNA methyltransferase, TrmH family, group 2 [Vibrio fischeri MJ11]
          Length = 159

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 5/141 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R +     +  +        E   L ++     +     R  N    L+ + + 
Sbjct: 14  NTGNIIRLSANCGANLHLIEPLGFDLEEKKLRRAGLDYHDLAHVKRHKNYAAFLEYLAND 73

Query: 206 G---FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGII 260
                +    ++ +              L+ G E +GL     +         + M    
Sbjct: 74  SDVEHRIFACTTKTTGHHTTPSYQKGDVLLFGPETRGLPADLIDGLPMEQRVRIPMMPDS 133

Query: 261 KALNVSNAAAVALYITQNHFA 281
           ++LN+SN+ A+ ++       
Sbjct: 134 RSLNLSNSVAIIVFEAWRQMG 154


>gi|15603378|ref|NP_246452.1| hypothetical protein PM1513 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721900|gb|AAK03597.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 158

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              L        +   L++       Q        L+ G E +G+     ++        
Sbjct: 64  ETFLAT--EQPKRLFALTTKGSPAHSQVQFELGDYLMFGPESRGIPMSILDSLPMAQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AVA+Y       
Sbjct: 122 IPMTENSRSMNLSNSVAVAVYEAWRQLG 149


>gi|118468881|ref|YP_886013.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170168|gb|ABK71064.1| RNA methyltransferase, TrmH family protein, group 2 [Mycobacterium
           smegmatis str. MC2 155]
          Length = 154

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 4/124 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R   A  C+  +            L ++     +        +L  A Q +   
Sbjct: 14  NTGNAIRMVAATGCELHLVHPLGFDLSEPKLRRAGLDYHDLASVTVHDDLPSAWQALMPA 73

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +  P           L+ G E  GL  +T      T    + M    ++L
Sbjct: 74  --RVYVFTAHASTPFTDIAYRPGDVLMFGPEPTGLDEQTLADPHITEQIRIPMLAGRRSL 131

Query: 264 NVSN 267
           N+SN
Sbjct: 132 NLSN 135


>gi|54294634|ref|YP_127049.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
 gi|53754466|emb|CAH15950.1| hypothetical protein lpl1711 [Legionella pneumophila str. Lens]
          Length = 257

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL   + P NIG+  R+        +      S  +     + A+GA + +    ++N 
Sbjct: 8   IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKSFPD-LKAREMAAGADDVLDAAVVTNT 66

Query: 195 LTDAL--------QKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           L +AL              G    GL   S  + + Q+  N ++A++ G E  GL  +  
Sbjct: 67  LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSDNTQVAIVFGREHAGLTNEEL 126

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  ++       +LN++ A  +  Y  +
Sbjct: 127 LKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158


>gi|301155324|emb|CBW14790.1| predicted rRNA methylase [Haemophilus parainfluenzae T3T1]
          Length = 158

 Score = 54.7 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     +    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++       +        L+ G E +G+     +         
Sbjct: 64  EAFLESEKPK--RLFALTTKGSPAHSEVQFELGDYLMFGPETRGIPMSILDKMPMEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVTIYEAWRQLG 149


>gi|224014875|ref|XP_002297099.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968218|gb|EED86567.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 410

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           R  + ++ LD +++  N+G+ILR+A AF  D I+ +     +   
Sbjct: 325 RQIKRIIALDAISNTSNMGSILRTAAAFGVDVILLSDDSCDAWYR 369


>gi|159184955|ref|NP_354849.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|159140233|gb|AAK87634.2| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 277

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 20/163 (12%)

Query: 125 TLDAVRNSQLLMVLDHVNDPH---NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            L+ V     +++++    P    NIG + R+   F    +          S     +AS
Sbjct: 7   ELELVAEGPAIILVE----PQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAAS 62

Query: 182 GALEHIPYIRI-SNLTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIK-NDKIA 230
            A   I   R+   L +A++ ++          +GF+ +     +   L  + K  +K  
Sbjct: 63  KADHVIDGTRVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAADTLRTKFKAGEKTG 122

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++ G E  GL  +    A  +    +     +LN++ A  V L
Sbjct: 123 ILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|90579380|ref|ZP_01235190.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
 gi|90440213|gb|EAS65394.1| putative RNA methyltransferase, TrmH family protein [Vibrio
           angustum S14]
          Length = 246

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        ++           V   + + A      +  + +
Sbjct: 7   VVLVGTSHPGNIGSAARAMKVMGLTNLVL----VDPACEVDGHTIALAAGAADVVENAKI 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLR 241
              L + +   GF  +G S+ S+     ++                 +A++ G E  GL 
Sbjct: 63  VKTLDEAVADCGF-VVGSSARSRTLEWPQLDPRENGIKVVAESNQHPVAILFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +      ++       +LN++ A
Sbjct: 122 NEELQKCHCHVYIPANPEYSSLNLAMA 148


>gi|254447029|ref|ZP_05060496.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           HTCC5015]
 gi|198263168|gb|EDY87446.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           HTCC5015]
          Length = 239

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 34/165 (20%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +V+       NIGA+ R+      + ++         S V    A+GA++ +       +
Sbjct: 3   VVMVRTFQSENIGAVARAMKNMGLNDLVLVAPR-DWPSDVARNRAAGAVDVLDNIALADS 61

Query: 195 LTDALQKMHSWGFQTIGLS----------SDSKKPLEQEIK----NDKIALILGAEGKGL 240
           + +A+   H      +  S          S++++ + +  +      ++A++LG E  GL
Sbjct: 62  VEEAIADCH----WVVATSARRRGYEWPMSNARQSMSEAYRRSQEGQQVAILLGPERSGL 117

Query: 241 RPKTQETATSMAHLHMPGIIKA-------LNVSNAAAVALYITQN 278
              +        ++       +       LNV+ AA V  Y    
Sbjct: 118 DSDSLRLCDQHCYI-------SANPDYPVLNVAQAAQVLTYELYQ 155


>gi|77460836|ref|YP_350343.1| RNA methyltransferase TrmH, group 1 [Pseudomonas fluorescens Pf0-1]
 gi|77384839|gb|ABA76352.1| putative tRNA/rRNA methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 264

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 23/173 (13%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           +P     L  +R     +VL + + P NIG   R+        ++             A+
Sbjct: 3   SPRAPAVLQNIR-----VVLVNTSHPGNIGGTARAMKNMGLSRLVLVDPRVFPHHEADAR 57

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEI 224
           ++           ++ L DAL   +      +G S+                 K +E+  
Sbjct: 58  ASGAGDILENAQVVATLEDALVGCN----LVLGTSARDRRIPWPLLDPRECGTKVVEEAG 113

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +IAL+ G E  GL     +      H+       +LN+  A  V  Y  +
Sbjct: 114 QGAEIALVFGREDSGLTNDELQRCHYHVHIPSDPEFSSLNLGAAVQVLSYEVR 166


>gi|56479103|ref|YP_160692.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56315146|emb|CAI09791.1| RNA methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 242

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 13/161 (8%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+   ++ +VL   + P NIGA  R+        +      +  +  V    ASGA + +
Sbjct: 4   AIALDRIRIVLSRTSHPGNIGAAARAMKTMGLSRLYLVAPSAFPD-PVADARASGATDVL 62

Query: 188 PYIRI-SNLTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
               +  +L +AL           +              + + +    K D +AL+ G E
Sbjct: 63  ESACVVDSLDEALHGTILSAAITARRRERSVPVRSAREAAPELVAFAEKGD-VALVFGTE 121

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             GL     E  +    +       +LN+  A  +  Y  +
Sbjct: 122 MSGLTNDEVERCSMPVSIPANPAFSSLNLGAAVQLLCYELR 162


>gi|220935230|ref|YP_002514129.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219996540|gb|ACL73142.1| tRNA/rRNA methyltransferase, TrmH family, group 1 [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 247

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 27/163 (16%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA-----LEHI 187
           +L +VL   + P NIGA   SA A    G+   +  SP        +A  +     L   
Sbjct: 6   RLRIVLIQTSHPGNIGA---SARAMKTMGLSDLRLVSPVRYPSAEATAMASGADDLLAGT 62

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI-------------KNDKIALILG 234
           P     +L +AL          +G S+  +     ++                 +AL+ G
Sbjct: 63  PVY--EDLDEALTGCR----LVMGTSARQRSLRWPQLNPREAAAALIEAAAQRPVALLFG 116

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            E  GL  +  +   S+  +       +LN++ A  V  Y  +
Sbjct: 117 REQSGLSNEELDRCHSLVTIPANEAYSSLNLAAAVQVLSYELR 159


>gi|89072687|ref|ZP_01159252.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
 gi|89051507|gb|EAR56961.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           sp. SKA34]
          Length = 246

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        ++        +S  +A +A  A      +  + +
Sbjct: 7   VVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDSHTIALAAGAA----DVVENAKI 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLR 241
              L + +   GF  +G S+ S+     ++                 +A++ G E  GL 
Sbjct: 63  VKTLDEAVADCGF-VVGSSARSRTLEWPQLDPRENGIKVVAESNLHPVAILFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +      ++       +LN++ A
Sbjct: 122 NEELQKCHCHVYIPANPEYSSLNLAMA 148


>gi|146321556|ref|YP_001201267.1| rRNA methyltransferase [Streptococcus suis 98HAH33]
 gi|145692362|gb|ABP92867.1| rRNA methyltransferase, TrmH family [Streptococcus suis 98HAH33]
          Length = 125

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLR 241
            + +      NL++ +      G +   +S  + K    E  ND      + G E KGL 
Sbjct: 9   WDKLDVRFYDNLSEFMDYASKQG-RVHLVSKYADKTYSDEDYNDGNIHYFLFGREDKGLP 67

Query: 242 PK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYI--TQNHFA 281
               +E       + M    +++LNVSN A + +Y    Q  FA
Sbjct: 68  EDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEALRQQQFA 111


>gi|322830295|gb|EFZ33372.1| hypothetical protein TCSYLVIO_262 [Trypanosoma cruzi]
          Length = 392

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 34/171 (19%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYI 190
           ++ + +++   P N+G ILR+   F   G+I +     +  +   +  + + A    PY+
Sbjct: 169 RVFVAIENPKTPANLGGILRAIGCFGYSGLIFSGTRLLAALKHRPVTDTQA-AGFSSPYV 227

Query: 191 RISNLTDALQKMHSW-GFQTIGLSSD---SKKPLEQEIKNDKI--AL------------- 231
            I ++T+  + +     F+ + ++ D      PL   +       AL             
Sbjct: 228 AIPDITNLFEVLEGATSFEAVVVAVDMIGGATPL--PLYRHPCLHALDGGARKRSQCTLP 285

Query: 232 -----ILGAEGKG-LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                + G E  G +R +      S   L   G   +LN++ A  V LY  
Sbjct: 286 NLVFYLFGPE-DGTIRQEVLARCHSAVFLPTQG---SLNLAAAVNVVLYDR 332


>gi|114332105|ref|YP_748327.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114309119|gb|ABI60362.1| RNA methyltransferase, TrmH family, group 2 [Nitrosomonas eutropha
           C91]
          Length = 154

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 24/158 (15%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L ++L     P N G I+R     S    +            L ++     E        
Sbjct: 2   LQVILHQPEIPPNTGNIIRLCANTSTQLHLIKPLGFNLSDRQLKRAGLDYHEWARLTVHE 61

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSM 251
           +L   L  M   G +   +++ + K  ++         + G+E  GL  +  E  +    
Sbjct: 62  DLASCLSLMD--GCRIFAVTTKATKHYDKVDYTTDDVFLFGSETCGLPVEVLEDFSQDRR 119

Query: 252 AHLHMPGIIKALNVSN----------AAAVALYITQNH 279
             + M                     +AAV +Y     
Sbjct: 120 IRIPM----------VPSSRSLNLSNSAAVIIYEAWRQ 147


>gi|34499100|ref|NP_903315.1| RNA methyltransferase [Chromobacterium violaceum ATCC 12472]
 gi|34104951|gb|AAQ61307.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 244

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 26/162 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   N P NIG+  R+        +   +      S      ASGA++ +    +  +
Sbjct: 6   VVLARPNHPGNIGSAARAMKTMGLSRLYLVEPKVFP-SEEANALASGAVDLLENATVVGS 64

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---------------IALILGAEGKG 239
           L +AL              +  ++ L   +   +               +AL+ G E  G
Sbjct: 65  LREALSD-----VTVACALTSRRRELTTPLSTPRQTTPELIARARDGEQVALVFGNETFG 119

Query: 240 LRPKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQNH 279
           L  +  E    +  +   G     +LN++ A  V  Y   +H
Sbjct: 120 LSIEEVEQCNRLVTIP--GNPDYFSLNLAMAVQVMTYELFSH 159


>gi|192360664|ref|YP_001981951.1| TrmH family RNA methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190686829|gb|ACE84507.1| RNA methyltransferase, TrmH family, group 1 [Cellvibrio japonicus
           Ueda107]
          Length = 286

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIG   R+      D +             + ++A         + +  L
Sbjct: 14  IVLVNTSHPGNIGGAARAMKNMGLDRLYLVAPKEYPSDKAVWRAAGATDVLDNAVVVETL 73

Query: 196 TDALQKMHSWGFQTIGLSSDSK-------------KPLEQEIKNDKIALILGAEGKGLRP 242
            +A+          +G S+  +             + +  E    ++A++ G E +GL  
Sbjct: 74  DEAIAGCS----LVVGTSARERRIPWPLLDPRQCGESIWAEAGEHEVAVVFGREDRGLTN 129

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +     T   H+       +LN++ A  V  Y  +
Sbjct: 130 EELHKCTYHVHIPANAEYSSLNLATAVQVICYEIR 164


>gi|306844095|ref|ZP_07476689.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
 gi|306275538|gb|EFM57270.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO1]
          Length = 276

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L +   P NIG + R+   F    +          S     +AS A   I   +   +
Sbjct: 17  IILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYGD 76

Query: 195 LTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKT 244
           L  A+  ++           GF+ +  + ++   L +  K   K  ++ G E  GL  + 
Sbjct: 77  LPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFGLSNEE 136

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A  +    +     +LN++ A  V L
Sbjct: 137 VGLADELVTFPVNPAFASLNIAQA--VLL 163


>gi|167835307|ref|ZP_02462190.1| RNA methyltransferase, TrmH family, group 2 [Burkholderia
           thailandensis MSMB43]
          Length = 156

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G ++R          +      P + A + ++     E+       + 
Sbjct: 4   VVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAH 253
              +        +    ++                 + G E +GL     E   A     
Sbjct: 64  DAFVAAEAPDPARMFAFTTRGSGRFHDRAFEPGDWFVFGPETRGLASALVERFPAGQRVR 123

Query: 254 LHMPGIIKALNVSNAAAVALYITQNH 279
           L M    ++LN+SN  AV ++     
Sbjct: 124 LPMRPGNRSLNLSNTVAVVVFEAWRQ 149


>gi|68059315|ref|XP_671643.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56488008|emb|CAI03490.1| hypothetical protein PB301201.00.0 [Plasmodium berghei]
          Length = 110

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 29/109 (26%)

Query: 197 DALQKMHSWGFQTIGLSS-DSKKPLEQEI--------KNDKIALILGAEGKGLRPKTQET 247
           + +  +   GF  +  SS  +   +   +        KN+K+ +ILG E KGL     + 
Sbjct: 1   NFISSLKQKGFTILSTSSPKNNTQMTNFVELKNVKINKNEKVMIILGNESKGLNEDIIKN 60

Query: 248 ATSMAHLH--------MPG--------IIKALNVSNAAAVALYITQNHF 280
           +    +++         P         I+ +LNV+N  ++ L+    HF
Sbjct: 61  SDICIYINNLFDEQNIQPNLKNTNDNIIVNSLNVNNVCSIILH----HF 105


>gi|29377148|ref|NP_816302.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|29344614|gb|AAO82372.1| RNA methyltransferase, TrmH family [Enterococcus faecalis V583]
          Length = 168

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    +       ++   L ++       +      + 
Sbjct: 5   IVLFEPQIPANTGNIARTCAATNTPLHLIEPLGFSTDDKHLKRAGLDYWNDVNITYHKDS 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPK-TQETATSMA 252
              L  +       +  +  + +   +   ND      + G E  GL     +E      
Sbjct: 65  AAFLAHVAGKHLHLV--TKFAHQTYSEVNYNDGEDHYFLFGKETTGLPETFMRENEEKCI 122

Query: 253 HLHMP-GIIKALNVSNAAAVALYITQNH 279
            + M    +++LN+SN AA+ +Y     
Sbjct: 123 RIPMNDEHVRSLNLSNTAALIVYEALRQ 150


>gi|317493377|ref|ZP_07951799.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918770|gb|EFV40107.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 228

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 20/154 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P NIGA  R+        +                 A G+ + +   +  N  +A   + 
Sbjct: 13  PENIGAAARAMKTMGFSSLRIVD-SQAYLEPATRWVAHGSGDILDNAQHFNTLEA--ALA 69

Query: 204 SWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRPKTQETATS 250
              F     +    +                ++      A++ G E  GL  +    A  
Sbjct: 70  DVDFTVATTARSRARYHYYCSPQELTGILQEKQSWTASCAIVFGREESGLSNEELALADI 129

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT----QNHF 280
           +  + M     +LN+  A  V  Y      QN F
Sbjct: 130 LTGVPMVADYPSLNLGQAVMVFCYQLSSLIQNRF 163


>gi|325577120|ref|ZP_08147604.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
 gi|325160702|gb|EGC72823.1| RNA methyltransferase [Haemophilus parainfluenzae ATCC 33392]
          Length = 158

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     +    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++       +        L+ G E +G+     +         
Sbjct: 64  EAFLESEKPK--RLFALTTKGGPAHSEVQFELGDYLMFGPETRGIPMSILDKMPMEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AVA+Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVAVYEAWRQLG 149


>gi|118618277|ref|YP_906609.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
 gi|118570387|gb|ABL05138.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium ulcerans Agy99]
          Length = 154

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 4/113 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+A A  C+  +            L ++     +        +LT A   +   
Sbjct: 14  NTGNAIRTAAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHGSLTQAWDAL--L 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHM 256
             +    ++ +              L+ G E  GL   T   A  T    + M
Sbjct: 72  PARVFAFTAGASVTFSDVDFRPGDVLMFGPEPTGLHAATLADAHITQQVRIPM 124


>gi|157803305|ref|YP_001491854.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
 gi|157784568|gb|ABV73069.1| tRNA/rRNA methyltransferase [Rickettsia canadensis str. McKiel]
          Length = 230

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 16/157 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIGA  R+   F  + +          +     +A GA+  I   +I  
Sbjct: 4   IIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNTKIYD 63

Query: 194 NLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIKN------DKIALILGAEGKGLRPK 243
           NL D+++ +          +    + +K  +  +  +       K+ ++ G E  GL  +
Sbjct: 64  NLEDSIKDLE----YLYATTCIKRAMNKDYVFSQNLSLDYPNSAKVGIMFGRENNGLSNE 119

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               A  +  ++      +LN++ A  +  Y    +F
Sbjct: 120 EISLANKIITINTT-EFSSLNIAQAVIIICYELFRNF 155


>gi|37528643|ref|NP_931988.1| hypothetical protein plu4834 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36788082|emb|CAE17206.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 162

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 21/158 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++    L++  +  I   
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRA---GLDYHEFANIKQH 60

Query: 196 TDALQKMHSWGFQ-----------TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            D    + + G             T G  + S    +         L+ G E +GL P  
Sbjct: 61  HDYFAFLENEGLTGASSARLFALTTKGTPAHSAVSYQAGDY-----LMFGPETRGLPPYV 115

Query: 245 QETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +         + M    +++N+SN+ AV ++      
Sbjct: 116 LDNMPPQQKIRIPMLANSRSMNLSNSVAVVVFEAWRQL 153


>gi|218437496|ref|YP_002375825.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7424]
 gi|218170224|gb|ACK68957.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7424]
          Length = 253

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 8/141 (5%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHS 204
           N+G++ R         +I         S    + A    + +  +++ N L  AL     
Sbjct: 21  NVGSVARVMKNMGLKRLILVNPRCDPFSDEAKRMAVHGQDILEQLQLVNSLPQALTGCQR 80

Query: 205 WG-----FQTIGLSSDSKKPLEQEIKNDKI--ALILGAEGKGLRPKTQETATSMAHLHMP 257
                   +T+    ++ +     + +  +  ALI G E +GL  +    A     +   
Sbjct: 81  AIATTSRMRTLPTVLETPRDALPWLLDSGVKGALIFGPEDRGLSNEELNYAQRFVCIPAN 140

Query: 258 GIIKALNVSNAAAVALYITQN 278
               +LN++ A AV +Y    
Sbjct: 141 PDYPSLNLAQAVAVCVYELYQ 161


>gi|240850641|ref|YP_002972041.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
 gi|240267764|gb|ACS51352.1| RNA methyltransferase, SpoU related [Bartonella grahamii as4aup]
          Length = 276

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           +++L     P NIG + R+   F    +   K      +     +AS A   I   +  +
Sbjct: 16  VIILVEPQLPENIGMVARAMANFGLSKLRLVKPREMFPNEKAIAAASKADHVINDTVIFN 75

Query: 194 NLTDALQKMH---------SWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243
            L D++  +H           GF+T+  + ++   L Q E    K  ++ G E  GL   
Sbjct: 76  TLRDSIADLHYVFATTARERCGFKTVKSAVEAASVLRQRESIGHKTGIVFGRERWGLEND 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  +    +     +LN++ A  V L
Sbjct: 136 EISLVDEIITFPVNPAFASLNIAQA--VLL 163


>gi|146319351|ref|YP_001199063.1| rRNA methyltransferase [Streptococcus suis 05ZYH33]
 gi|145690157|gb|ABP90663.1| rRNA methyltransferase, TrmH family [Streptococcus suis 05ZYH33]
          Length = 125

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLR 241
            + +      NL + +      G +   +S  + K    E  ND      + G E KGL 
Sbjct: 9   WDKLDVRFYDNLAEFMDYASKQG-RVHLVSKFADKTYSDEDYNDGNIHYFLFGREDKGLP 67

Query: 242 PK-TQETATSMAHLHMP-GIIKALNVSNAAAVALYI--TQNHFA 281
               +E       + M    +++LNVSN A + +Y    Q  FA
Sbjct: 68  EDFMREHPEKAIRIPMNDEHVRSLNVSNTACMIVYEALRQQQFA 111


>gi|114327801|ref|YP_744958.1| rRNA methylase [Granulibacter bethesdensis CGDNIH1]
 gi|114315975|gb|ABI62035.1| RRNA methylase, SpoU family [Granulibacter bethesdensis CGDNIH1]
          Length = 257

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 11/157 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP- 188
           R+   +++L       NIG+  R+        +               ++ASGA   +  
Sbjct: 13  RDPSPVIILVRPQLAENIGSTARAMANCGLFHLRLVSPRDGWPQDRAWRTASGADNILDS 72

Query: 189 YIRISNLTDALQKMHS---------WGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGK 238
                 + DA+  +H             +TI  +  +   +    +   K  ++ G E  
Sbjct: 73  LTVHETVEDAVADLHRVFATCPRPRHIVKTIMTARGAAADIVLACERGLKTGILFGPERA 132

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           GL       A ++    +     +LNVS A  V  Y 
Sbjct: 133 GLDNDDMACADTLVRYPLNPDFMSLNVSQAVMVMGYE 169


>gi|219856334|ref|YP_002473456.1| hypothetical protein CKR_2991 [Clostridium kluyveri NBRC 12016]
 gi|219570058|dbj|BAH08042.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 157

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +        +   L ++     +++       L
Sbjct: 7   IVLFEPEIPQNTGNIARTCVLTGSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLT----L 62

Query: 196 TDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MA 252
            D  +++            ++  K   +     D+  ++ G E  GL  K +++      
Sbjct: 63  YDCYEELRERYKNGTFYFSTTHGKNFYQHAKFKDEDFIVFGKESCGLPDKIRDSNPEKNI 122

Query: 253 HLHMPGIIK-ALNVSNAAAVALYITQNHF 280
            L M      +LN+SNA A+ +Y      
Sbjct: 123 RLPMIKTTTRSLNLSNAVAIVVYEALRQL 151


>gi|153955993|ref|YP_001396758.1| hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
 gi|146348851|gb|EDK35387.1| Hypothetical protein CKL_3384 [Clostridium kluyveri DSM 555]
          Length = 155

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 8/149 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V       +        +   L ++     +++       L
Sbjct: 5   IVLFEPEIPQNTGNIARTCVLTGSRLHLIKPLGFSLDEKHLRRAGLDYWKYLDLT----L 60

Query: 196 TDALQKMHSW--GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS-MA 252
            D  +++            ++  K   +     D+  ++ G E  GL  K +++      
Sbjct: 61  YDCYEELRERYKNGTFYFSTTHGKNFYQHAKFKDEDFIVFGKESCGLPDKIRDSNPEKNI 120

Query: 253 HLHMPGIIK-ALNVSNAAAVALYITQNHF 280
            L M      +LN+SNA A+ +Y      
Sbjct: 121 RLPMIKTTTRSLNLSNAVAIVVYEALRQL 149


>gi|328952869|ref|YP_004370203.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453193|gb|AEB09022.1| RNA methyltransferase, TrmH family, group 1 [Desulfobacca
           acetoxidans DSM 11109]
          Length = 276

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           AL    + S  L  +R   L ++L     P NIGA  R+A       +I  +     +  
Sbjct: 5   ALHHPDIESVPLRRIRLENLAVILHKPRSPENIGASARAACNMGLSRLIVVQPEVLDQER 64

Query: 175 VLAKSASGALEHI-PYIRISNLTDALQKMHSWGFQTIGLSS--------------DSKKP 219
           +L  +   A E I   +   +L  AL   H      +G ++              D  + 
Sbjct: 65  MLKMATGSAAELIHNLVVYHDLGTALGPFH----FIVGTTARIGGNVRQSPVTPRDIAQQ 120

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L     +++IAL+ G E  GL  +      ++  +      ++LN++ A  V L
Sbjct: 121 LIPLSYHNRIALLFGPENWGLTNEELAFCHALVTIPTA-AFRSLNLAQA--VLL 171


>gi|325285781|ref|YP_004261571.1| tRNA/rRNA methyltransferase SpoU [Cellulophaga lytica DSM 7489]
 gi|324321235|gb|ADY28700.1| tRNA/rRNA methyltransferase (SpoU) [Cellulophaga lytica DSM 7489]
          Length = 151

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 4/141 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G I R ++A      +            + ++     +H+      ++
Sbjct: 5   IVLFEPEIPNNTGNIGRLSLASGSTLHLVKPFGFELNDKRVKRAGLDYWQHLDLKIYDSI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHL 254
           T   +      F    LS+ ++K   +    D +  + G E  GL     E    S+  +
Sbjct: 65  THFFEVHSDKKF--AFLSAKAEKNYYEIDYEDNMFFVFGKESVGLPASVVEKHKNSLYKI 122

Query: 255 HMPG-IIKALNVSNAAAVALY 274
            +    I++LN++NA ++ +Y
Sbjct: 123 PLFSEHIRSLNLANAVSIVIY 143


>gi|254282434|ref|ZP_04957402.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           NOR51-B]
 gi|219678637|gb|EED34986.1| RNA methyltransferase, TrmH family, group 1 [gamma proteobacterium
           NOR51-B]
          Length = 244

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H + P NIG   R+        +               ++AS +        + ++
Sbjct: 8   IVLVHTSSPGNIGGAARAMKNMGLSRLTLVAPREFPAPEATWRAASASDVLNSARIVDSV 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRP 242
            +A+          +G S+  ++              L    + +++A++ G E +GL  
Sbjct: 68  DEAIADSQ----FVVGTSARGRRIPWPVLDPRRCAERLAVSSRTERVAILFGREDRGLTN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +      H+       +LN++ A  +  Y  +
Sbjct: 124 EELQRCNLHCHIPSHEDYSSLNLAMAVQIVAYELR 158


>gi|251788732|ref|YP_003003453.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
 gi|247537353|gb|ACT05974.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
          Length = 249

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  ++ SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVKPDSQAISLSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +        +G S+ S+                 QE +   +A++ G E  GL  
Sbjct: 63  VDTLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSIQEAQRAPVAIVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  +  Y  +
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVR 157


>gi|84624212|ref|YP_451584.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368152|dbj|BAE69310.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 254

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL     P NIGA  R+         ++     +        + ++GA      +  + +
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAE---DVLSEAPI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L +  +     IG ++ +++   +E+  D+              +A + G E  GL 
Sbjct: 65  FATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASEPAEVAFVFGRERTGLT 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +  H+       +LN++ A  V  Y  +
Sbjct: 125 NDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|269468203|gb|EEZ79896.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 152

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 3/145 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P+N G+++R +        +            L ++     E        N 
Sbjct: 4   LVLFEPEIPNNTGSLIRLSANMGASLHLIKPFGFEITDKRLRRAGLDYKELARVYEYENF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
            D L K      +   +SS  K+           + + G E +GL  +  +       L 
Sbjct: 64  EDYLAKAKPE--RLFAVSSKVKQIYTDPEYQSGDSFLFGPETRGLPREILDQ-YQGITLP 120

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M    ++LN+SN  ++  Y      
Sbjct: 121 MQAESRSLNLSNCVSIVAYEAWRQL 145


>gi|118579084|ref|YP_900334.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118501794|gb|ABK98276.1| RNA methyltransferase, TrmH family, group 1 [Pelobacter propionicus
           DSM 2379]
          Length = 251

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 22/154 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +V+     P NIG + R+        +   K           K A  A + +       +
Sbjct: 14  IVMVEPQSPGNIGMVCRAMKNMGLSRLRLVKGC-DRFHPESLKFAVSAKDLLERAELYDD 72

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--------------LILGAEGKGL 240
           L  AL         T+G +    K  ++ +   ++A              L+ G E  GL
Sbjct: 73  LASALADCA----LTVGTTRRHGKYRQEILSPPQVATLLRTRAQGDCRGALVFGREDSGL 128

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
                      A +       +LN+S A  V L+
Sbjct: 129 TTDELSLCRWHATIPTSSEYGSLNLSQA--VLLF 160


>gi|227827666|ref|YP_002829446.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.14.25]
 gi|229584870|ref|YP_002843372.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.27]
 gi|238619837|ref|YP_002914663.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.4]
 gi|227459462|gb|ACP38148.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.14.25]
 gi|228019920|gb|ACP55327.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.27]
 gi|238380907|gb|ACR41995.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           M.16.4]
          Length = 237

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 25/156 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL      +NIG + R    FS D +      +    +   K ++G  E +   +I N 
Sbjct: 4   VVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRA--NVSEAFKFSAGGKEFLEKAKIVNS 61

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP------------LEQEIKNDKIALILGAEGKGLRP 242
             +A+  +       I  SS +               L   I+  K+AL+ G E  GL  
Sbjct: 62  FDEAINDVDIK----IATSSIADNNGDILRKSIRPWELLSLIQGKKVALVFGRESVGLTR 117

Query: 243 KTQETATSMAHLHMPGIIKA---LNVSNAAAVALYI 275
           +       + ++       +   LN+S+A  + LY 
Sbjct: 118 EEIFKCDFLLYIPANP---SYPVLNLSHAVGIVLYE 150


>gi|92114283|ref|YP_574211.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91797373|gb|ABE59512.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 246

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 24/160 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG   R+        ++     S  + A   + A+GA + I   R+  +
Sbjct: 7   IVLVQTFHPGNIGQAARAMKTMGLSDLVLVNPRSFPD-AEATRLAAGATDVIDNARVVEH 65

Query: 195 LTDALQKMHSWGFQTIGLSS----------DSKKPLEQEI----KNDKIALILGAEGKGL 240
           +  A+        Q +G S+          D  +P+  E+    ++  +AL+ G E  GL
Sbjct: 66  IAQAVGDC----VQVVGASARLRSLPLPHFDDPEPMASELIEHAQDAPVALVFGRERFGL 121

Query: 241 RPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQN 278
                   T    +       +  LN++ A  +  Y  + 
Sbjct: 122 TNDEIRHCTHQVSIPANPEYGV--LNLAQAVQILAYEVRR 159


>gi|315633425|ref|ZP_07888716.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
 gi|315477925|gb|EFU68666.1| RNA methyltransferase [Aggregatibacter segnis ATCC 33393]
          Length = 158

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 10/151 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     +    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFADIKKHKTF 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              LQ       +   T G  + S+   E         L+ G E +G+      +  A  
Sbjct: 64  EAFLQSEQPKRLFALTTKGTPAHSEVKFELGDY-----LMFGPETRGIPMDILNSMPAEQ 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              + M    +++N+SN+ AV +Y       
Sbjct: 119 KIRIPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|254424557|ref|ZP_05038275.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
 gi|196192046|gb|EDX87010.1| RNA methyltransferase, TrmH family [Synechococcus sp. PCC 7335]
          Length = 238

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 17/155 (10%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           Q   VL    +  NIGA  R+        +   +  +   S +    A G+ EHI     
Sbjct: 3   QFSFVLVEPGEAGNIGAAARAINTMGYTDLRLVRPKADHLSGIARAMAHGS-EHI-LENA 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKG 239
               D    +          +    +        D              +A++ G+E  G
Sbjct: 61  PQYEDLAGALDGIDLACASTARHRMQKYHYVSVRDLPDLLEAKGHLVSTVAIVFGSERSG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L  +  +T   +  +       +LN++ A  V +Y
Sbjct: 121 LSNQDIQTCDLVTTIPQITPQPSLNLAQA--VMIY 153


>gi|184157822|ref|YP_001846161.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|332874635|ref|ZP_08442526.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6014059]
 gi|183209416|gb|ACC56814.1| rRNA methylase [Acinetobacter baumannii ACICU]
 gi|323517711|gb|ADX92092.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332737164|gb|EGJ68100.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6014059]
          Length = 279

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 28/161 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + +     +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKTYP-HPDIQALAAGAQDLLEQVEIVET 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGKGL 240
           L +A++  H       G S+ S+                ++   +  +IA++ G E +GL
Sbjct: 77  LEEAIKDCH----LVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKA----LNVSNAAAVALYITQ 277
             +    A     +     + +    LNV+ A  V  Y  +
Sbjct: 133 TNEELALANYHLTIP----VNSDYGVLNVAQAIQVVCYELR 169


>gi|149909608|ref|ZP_01898261.1| 23S rRNA methyltransferase [Moritella sp. PE36]
 gi|149807312|gb|EDM67265.1| 23S rRNA methyltransferase [Moritella sp. PE36]
          Length = 172

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 12/155 (7%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           ++N  + + L +   P N+GA++R+A  +  D +  T R     SA    + + A +  P
Sbjct: 1   MKNKNVSIGLTNPKSPTNVGAVMRAAGCYQADAVYYTGRRYDRASAFQTDTQNIAAKT-P 59

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG-LRPKTQET 247
              + N  D++ +  S     + L+ +   PL      D +  I G E  G +  K  + 
Sbjct: 60  LTGVDNWLDSIPE--STNIVCVELA-EGAIPLPAFEHPDNVIYIFGPE-DGTIDQKVIDR 115

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A+++ ++   G +   N++    V LY   +  AK
Sbjct: 116 ASAVVYVPTVGCM---NLAATVNVLLY---DRLAK 144


>gi|148359291|ref|YP_001250498.1| RNA methyltransferase [Legionella pneumophila str. Corby]
 gi|296107338|ref|YP_003619038.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|148281064|gb|ABQ55152.1| RNA methyltransferase [Legionella pneumophila str. Corby]
 gi|295649239|gb|ADG25086.1| RNA methyltransferase [Legionella pneumophila 2300/99 Alcoy]
 gi|307610445|emb|CBX00016.1| hypothetical protein LPW_17721 [Legionella pneumophila 130b]
          Length = 257

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL   + P NIG+  R+        +      S  +     + A+GA + +    ++N 
Sbjct: 8   IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKSFPD-LKAKEMAAGADDVLDAAVVTNT 66

Query: 195 LTDAL--------QKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           L +AL              G    GL   S  + + Q+  N ++A++ G E  GL  +  
Sbjct: 67  LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSDNTQVAIVFGREHAGLTNEEL 126

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  ++       +LN++ A  +  Y  +
Sbjct: 127 LKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158


>gi|54297660|ref|YP_124029.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
 gi|53751445|emb|CAH12863.1| hypothetical protein lpp1711 [Legionella pneumophila str. Paris]
          Length = 257

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL   + P NIG+  R+        +      S  +     + A+GA + +    ++N 
Sbjct: 8   IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKSFPD-LKAKEMAAGADDVLDAAVVTNT 66

Query: 195 LTDAL--------QKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           L +AL              G    GL   S  + + Q+  N ++A++ G E  GL  +  
Sbjct: 67  LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSDNTQVAIVFGREHAGLTNEEL 126

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  ++       +LN++ A  +  Y  +
Sbjct: 127 LKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158


>gi|229845812|ref|ZP_04465924.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 7P49H1]
 gi|229810816|gb|EEP46533.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 7P49H1]
          Length = 160

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       + + L++       Q        L+ G E +G+               
Sbjct: 64  AAFLESEKPQ--RLLALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPLEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|294664933|ref|ZP_06730248.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605303|gb|EFF48639.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 254

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL     P NIGA  R+         ++     +        + ++GA      +  + +
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAE---DVLSQAPI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L +  +     IG ++ +++   +E+  D+              +A + G E  GL 
Sbjct: 65  FATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLT 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +  H+       +LN++ A  V  Y  +
Sbjct: 125 NDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|323466957|gb|ADX70644.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           helveticus H10]
          Length = 186

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +   R  +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRRHDDL 64

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L+ +  +   +     SS +   ++    N     + G E  GL     +E      
Sbjct: 65  NAFLKTLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGLPETFMREYYDRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+  N+SN+ A+ L      
Sbjct: 125 RIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|271501587|ref|YP_003334613.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345142|gb|ACZ77907.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech586]
          Length = 248

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  ++ SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVKPDSQAISLSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +        +G S+ S+                 QE ++  +A++ G E  GL  
Sbjct: 63  VDTLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVLSIQEAQHAPVAIVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  +  Y  +
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVR 157


>gi|161507184|ref|YP_001577138.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571]
 gi|260102476|ref|ZP_05752713.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|160348173|gb|ABX26847.1| hypothetical protein lhv_0705 [Lactobacillus helveticus DPC 4571]
 gi|260083713|gb|EEW67833.1| TrmH family RNA methyltransferase [Lactobacillus helveticus DSM
           20075]
 gi|328461854|gb|EGF34076.1| hypothetical protein AAULH_03893 [Lactobacillus helveticus MTCC
           5463]
          Length = 186

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +   R  +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRRHDDL 64

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L+ +  +   +     SS +   ++    N     + G E  GL     +E      
Sbjct: 65  NAFLKTLGPNDEMYLISKFSSKNYVDVDYTDPNKNYYFVFGKETTGLPETFMREYYDRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+  N+SN+ A+ L      
Sbjct: 125 RIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|169796249|ref|YP_001714042.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|213157017|ref|YP_002319062.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii AB0057]
 gi|215483704|ref|YP_002325925.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB307-0294]
 gi|239504053|ref|ZP_04663363.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB900]
 gi|301347826|ref|ZP_07228567.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB056]
 gi|301511110|ref|ZP_07236347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB058]
 gi|301595111|ref|ZP_07240119.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB059]
 gi|332855453|ref|ZP_08435873.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013150]
 gi|332866041|ref|ZP_08436785.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013113]
 gi|169149176|emb|CAM87055.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
 gi|193077116|gb|ABO11892.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
 gi|213056177|gb|ACJ41079.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii AB0057]
 gi|213987649|gb|ACJ57948.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Acinetobacter baumannii AB307-0294]
 gi|332727427|gb|EGJ58857.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013150]
 gi|332734861|gb|EGJ65952.1| RNA methyltransferase, TrmH family, group 1 [Acinetobacter
           baumannii 6013113]
          Length = 279

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 28/161 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + +     +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKTYP-HPDIQALAAGAQDLLEQVEIVET 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGKGL 240
           L +A++  H       G S+ S+                ++   +  +IA++ G E +GL
Sbjct: 77  LEEAIKDCH----LVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKA----LNVSNAAAVALYITQ 277
             +    A     +     + +    LNV+ A  V  Y  +
Sbjct: 133 TNEELALANYHLTIP----VNSDYGVLNVAQAIQVVCYELR 169


>gi|21243118|ref|NP_642700.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108636|gb|AAM37236.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 254

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL     P NIGA  R+         ++     +        + ++GA      +  + +
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAE---DVLSQAPI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L +  +     IG ++ +++   +E+  D+              +A + G E  GL 
Sbjct: 65  FATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLT 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +  H+       +LN++ A  V  Y  +
Sbjct: 125 NDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
 gi|133739252|emb|CAL62301.1| Putative tRNA/rRNA methyltransferase [Herminiimonas arsenicoxydans]
          Length = 248

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 15/159 (9%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPY 189
           ++L  VL   + P NIGA  R+        ++         +        ASGA + +  
Sbjct: 5   NRLRFVLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDILAS 64

Query: 190 IR-ISNLTDALQ----------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            R + ++ +AL           ++  +    I  +         +    + A+I G E  
Sbjct: 65  ARIVGSIEEALADCNYAAAVTARLREFSPPVI--TPRELATRLADEAGLQAAVIFGNERF 122

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +  E    + ++       +LN++ A  V  Y  +
Sbjct: 123 GLPNEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEAR 161


>gi|322508137|gb|ADX03591.1| Putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
           1656-2]
          Length = 271

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 28/161 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + +     +  
Sbjct: 10  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKTYP-HPDIQALAAGAQDLLEQVEIVET 68

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGKGL 240
           L +A++  H       G S+ S+                ++   +  +IA++ G E +GL
Sbjct: 69  LEEAIKDCH----LVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGL 124

Query: 241 RPKTQETATSMAHLHMPGIIKA----LNVSNAAAVALYITQ 277
             +    A     +     + +    LNV+ A  V  Y  +
Sbjct: 125 TNEELALANYHLTIP----VNSDYGVLNVAQAIQVVCYELR 161


>gi|260856626|ref|YP_003230517.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|257755275|dbj|BAI26777.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368]
 gi|323156188|gb|EFZ42347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli EPECa14]
          Length = 245

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ AA V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAAQVIAYEVR 157


>gi|256061276|ref|ZP_05451426.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261325283|ref|ZP_05964480.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261301263|gb|EEY04760.1| RNA methyltransferase [Brucella neotomae 5K33]
          Length = 276

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L +   P NIG + R+   F    +          S     +AS A   I   +   +
Sbjct: 17  IILVNPQLPENIGMVARAMANFGLAELRLVNPREEFLSEKARAAASKADHVIDNAVVYDD 76

Query: 195 LTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKT 244
           L  A+  ++           GF+ +  + ++   L +  K   K  ++ G E  GL  + 
Sbjct: 77  LPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFGLSNEE 136

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A  +    +     +LN++ A  V L
Sbjct: 137 VGLADELLTFPVNPAFASLNIAQA--VLL 163


>gi|222479804|ref|YP_002566041.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452706|gb|ACM56971.1| RNA methyltransferase, TrmH family, group 1 [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 290

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 16/148 (10%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKM 202
           P N+G I R+   F    +         E       A  A E + P        + +   
Sbjct: 49  PGNVGTIARAMKNFGLSDLKLVDPPELKEDGEAYGFAGHAREDVLPNADEVTFDEIVANY 108

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKI-------------ALILGAEGKGLRPKTQETAT 249
           H+ G  T  ++ +  +  E+      +             A++ G EG+GL  +      
Sbjct: 109 HTVG--TTAITGEDDQSHERFPFKTPVELRESLKTVDAPTAIVFGREGRGLNNEELSQLD 166

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +        LN+  AA V LY  +
Sbjct: 167 EVCSIPADDDYPVLNLGQAATVLLYELR 194


>gi|70914349|ref|XP_731810.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56502066|emb|CAH84226.1| hypothetical protein PC300919.00.0 [Plasmodium chabaudi chabaudi]
          Length = 118

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%)

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
           ++  K L   I  +K  LILG E +GL             +   GII++LNV  +AA
Sbjct: 62  TNDSKRLNDFIFPEKCILILGDEKEGLPSSILLLLHHCVEIPGHGIIRSLNVHVSAA 118


>gi|268530712|ref|XP_002630482.1| Hypothetical protein CBG11218 [Caenorhabditis briggsae]
          Length = 1250

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 133  QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA-VLAKSASGALEHIPYIR 191
             L++V   V+ P+N+G I R++  F  D ++        +S       +S   ++I  ++
Sbjct: 1116 SLIVVASLVDKPNNLGGICRTSEIFGVDTLVVADVLVAQDSNFKALSMSSENWQNIEAVK 1175

Query: 192  ISNLTDALQKMHSWGFQTIGLSSDSKKP-LEQEIKNDK 228
             +NL + LQ + + G+  I     +    +   +   K
Sbjct: 1176 RANLLEYLQGLRANGYTVIAAEQTTDSVMMHDFVFPKK 1213


>gi|172037914|ref|YP_001804415.1| RNA methyltransferase [Cyanothece sp. ATCC 51142]
 gi|171699368|gb|ACB52349.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. ATCC
           51142]
          Length = 247

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 52/154 (33%), Gaps = 14/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G++ R       + +I  K +    S         A+  I  +  S +
Sbjct: 11  IVLVEPAGPLNVGSVARVMKNMGLNQLILVKPHCDRLSDEAK---LMAVHGIDVLEKSQV 67

Query: 196 TDALQKMHSWGFQTIGLSSDS-------KKPLEQEIK----NDKIALILGAEGKGLRPKT 244
              + +      + I  +  S       + P E        N   AL+ G E +GL  + 
Sbjct: 68  VHTIPEALQGCHRIIATTGRSLSLPTHLETPREALPWLLTENFNTALLFGPEDRGLNNEE 127

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              A     +       +LN++ A AV  Y    
Sbjct: 128 LNYAQRFVCIPANSDYSSLNLAQAVAVCSYELHQ 161


>gi|323474724|gb|ADX85330.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           REY15A]
 gi|323477452|gb|ADX82690.1| RNA methyltransferase, TrmH family, group 1 [Sulfolobus islandicus
           HVE10/4]
          Length = 237

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 25/156 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL      +NIG + R    FS D +      +    +   K ++G  E +   +I N 
Sbjct: 4   VVLVEPEGEYNIGFVARLCRNFSVDELYIVNPRA--NVSEAFKFSAGGKEFLEKAKIVNS 61

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP------------LEQEIKNDKIALILGAEGKGLRP 242
             +A+  +       I  SS +               L   I+  K+AL+ G E  GL  
Sbjct: 62  FDEAINDVDIK----IATSSIADNNGDILRKSIRPWELLSLIQGKKVALVFGRESVGLTR 117

Query: 243 KTQETATSMAHLHMPGIIKA---LNVSNAAAVALYI 275
           +       + ++       +   LN+S+A  + LY 
Sbjct: 118 EEIFRCDFLLYIPANP---SYPVLNLSHAVGIVLYE 150


>gi|169633231|ref|YP_001706967.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
 gi|169152023|emb|CAP00898.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
          Length = 279

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 28/161 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + +     +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKTYP-HPDIQALAAGAQDLLEQVEIVET 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGKGL 240
           L +A++  H       G S+ S+                ++   +  +IA++ G E +GL
Sbjct: 77  LEEAIKDCH----LVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKA----LNVSNAAAVALYITQ 277
             +    A     +     + +    LNV+ A  V  Y  +
Sbjct: 133 TNEELALANYHLTIP----VNSDYGVLNVAQAIQVVCYELR 169


>gi|114799978|ref|YP_759896.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
 gi|114740152|gb|ABI78277.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
           15444]
          Length = 248

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 18/142 (12%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHS 204
           NIGA  R  + F    +   K      SA     ++GAL           L +A+  +  
Sbjct: 17  NIGAAARVMLNFGLTDLRLVKPRDGWPSAPAEAMSAGALAQGTQVSVFETLEEAMTGLT- 75

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDK------------IALILGAEGKGLRPKTQETATSMA 252
               TI  ++  +  +E+ +                 A++ G E  GL  +      ++ 
Sbjct: 76  ---YTIATTARPRG-MEKAVFGAPDAVGALKRQAGQSAVLFGGEKSGLPNEAVALCDAIL 131

Query: 253 HLHMPGIIKALNVSNAAAVALY 274
              +     +LN++ A  V  +
Sbjct: 132 TYPVNPDFSSLNLAQAVGVFCH 153


>gi|92114963|ref|YP_574891.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91798053|gb|ABE60192.1| RNA methyltransferase TrmH, group 1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 274

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 20/161 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L +VL   + P NIG   R+        +           +     ASGA   +   R+
Sbjct: 19  KLRIVLIGTSHPGNIGGTARAMHNMGLADLALVAPRCEVYGSESHARASGADALVSNARV 78

Query: 193 S-NLTDALQKMHSWGFQTIGLS---------------SDSKKPLEQEIKNDKIALILGAE 236
              L +A+          +G S                  + P E   +N + AL+ G E
Sbjct: 79  HATLEEAVSDCT----FVVGASARVRHLPWPMLTPRALGERLPRECAPENARAALVFGRE 134

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             G+     +   +  H+       +LN++ A  V  Y  +
Sbjct: 135 DSGMTNGELQRCHAHVHIPTNPDFSSLNLAAAVQVLAYECR 175


>gi|320335450|ref|YP_004172161.1| tRNA/rRNA methyltransferase SpoU [Deinococcus maricopensis DSM
           21211]
 gi|319756739|gb|ADV68496.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus maricopensis DSM
           21211]
          Length = 149

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 2/132 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+G + R+         +        +     ++    L  +     ++ 
Sbjct: 4   LVLYTPEKAGNVGNVARTCAVLGAHLHLIRPYGFHLQDREFRRAVMDYLSGVTLHEHASW 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
           T     +   G      S+ +         +  + L+ G E +GL P    +    A + 
Sbjct: 64  THFQASLP-AGAHVTAFSTRATHIHTTAPVSRGMYLLFGPESRGL-PDWLLSGLQAARIP 121

Query: 256 MPGIIKALNVSN 267
            P   ++LN+S 
Sbjct: 122 QPAGGRSLNLSV 133


>gi|254496594|ref|ZP_05109462.1| RNA methyltransferase [Legionella drancourtii LLAP12]
 gi|254354218|gb|EET12885.1| RNA methyltransferase [Legionella drancourtii LLAP12]
          Length = 251

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL   + P NIG+  R+      + +      S  +     + A+GA + +    ++  
Sbjct: 8   VVLVATSHPGNIGSTARAMKTMGLNSLYLVSPKSFPDY-KAREMAAGADDLLETAVVTET 66

Query: 195 LTDALQKMHSWGFQTIGLS-------------SDSKKPLEQEIKNDKIALILGAEGKGLR 241
           L +AL          +  S             S S + + ++ ++ +IA++ G E  GL 
Sbjct: 67  LDEALVGCQ----LILATSARPRGLSLPGLIPSSSAELVSKQAESTQIAIVFGREHAGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +         H+       +LN++ A  +  Y  +
Sbjct: 123 NEELLKCHYHIHIPSNPEYSSLNLAQAVQIVAYELR 158


>gi|166711820|ref|ZP_02243027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 254

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL     P NIGA  R+         ++     +        + ++GA      +  + +
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAE---DVLSEAPI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L +  +     IG ++ +++   +E+  D+              +A + G E  GL 
Sbjct: 65  FATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKASQPAEVAFVFGRERTGLT 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +  H+       +LN++ A  V  Y  +
Sbjct: 125 NDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|78222581|ref|YP_384328.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
           GS-15]
 gi|78193836|gb|ABB31603.1| RNA methyltransferase TrmH, group 1 [Geobacter metallireducens
           GS-15]
          Length = 248

 Score = 53.9 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 21/161 (13%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + + ++L     P N+G + R+        +   K   P +     K A  A + +   
Sbjct: 6   KNNISVILVEPQSPGNVGMVCRAMKNMGLAELRIVKGC-PLDHPEAYKFAVSAKDLLEGA 64

Query: 191 RI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGA 235
           R+  +L +AL                 K    QEI +               + AL+ G 
Sbjct: 65  RVFPSLEEALADTE---LSVATTRRHGK--YRQEIYSPGEIAGKIVTNLAGNRAALVFGR 119

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           E  GL           A +       +LN++ A  +  Y  
Sbjct: 120 EDSGLTTDELSLCRWHATIPTSAEYGSLNLAQAVLIFCYEL 160


>gi|288575566|ref|ZP_05977206.2| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
 gi|288567580|gb|EFC89140.1| RNA methyltransferase, TrmH family [Neisseria mucosa ATCC 25996]
          Length = 134

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
                 D  +      P +SA + ++     E        N  D L+ +   G +   L+
Sbjct: 2   CANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFAKLTVHENFEDCLKAL--EGRRIFALT 59

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAV 271
           +  K   ++    +    + G E +GL  +  +T        L M    +++N+SN  AV
Sbjct: 60  TKGKTRPDKVSFVEGDVFLFGPETRGLPAEILDTLPEGQKLRLPMKLGSRSMNLSNTVAV 119

Query: 272 ALYITQNH 279
            L+     
Sbjct: 120 ILFEAWRQ 127


>gi|283853704|ref|ZP_06370934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
 gi|283570914|gb|EFC18944.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio sp. FW1012B]
          Length = 250

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 19/158 (12%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRI 192
           L +VL       N+GA  R+        ++     +   + A    ++ G L     +  
Sbjct: 5   LTIVLFRPKFSENVGAAARACANMGVSRLVLVDPPAFDPDRARPMATSKGGL----LLDT 60

Query: 193 SNLTDALQKMHSWGFQTIGLSS-------DSKKPLEQEI-------KNDKIALILGAEGK 238
             +   L    +      G ++           P E              +A++ G E  
Sbjct: 61  LEIVPTLAAAVAGAEAVYGTTARLGGWRKGEVTPAEAADGICRTLGAGGGVAVVFGPEDA 120

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL  +  +    + ++   G   +LN++ A  V  Y  
Sbjct: 121 GLSNQETQLCGRLVNIPTAGEATSLNLAQAVLVVCYEV 158


>gi|311743114|ref|ZP_07716922.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
 gi|311313794|gb|EFQ83703.1| SpoU rRNA methylase [Aeromicrobium marinum DSM 15272]
          Length = 156

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 5/137 (3%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N G+ +R A A   + +         E   L ++     +       ++L  A   +  
Sbjct: 13  GNTGSAIRLAAATGSE-LHLVDPLFDLEDTKLRRAGLDYHDLAVVTVHADLDAAWDHL-- 69

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKA 262
              +    ++ +++            L+ G E  GL  +  +    T    L M    ++
Sbjct: 70  LPARVFAFTAQAERVYTDVRYRPGDVLLFGPEPTGLPGEVMDDPRVTDRLRLPMLPGRRS 129

Query: 263 LNVSNAAAVALYITQNH 279
           +N++N A+VA+Y     
Sbjct: 130 MNLANCASVAVYEAWRQ 146


>gi|147919481|ref|YP_686779.1| rRNA methyltransferase [uncultured methanogenic archaeon RC-I]
 gi|110622175|emb|CAJ37453.1| rRNA methyltransferase (SpoU family) [uncultured methanogenic
           archaeon RC-I]
          Length = 249

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 35/165 (21%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+G++ R+   F  D ++  +      SA      + A      +  + +
Sbjct: 11  VVLVEPAFEGNVGSVCRAMKNFGFDDLVLVRPCELGNSAK-----AMASHAQDLLASAAI 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQ----------------EIKNDKIALILGAEGKG 239
            D +++        +G +        +                E K   +AL+ G E  G
Sbjct: 66  VDTVEEALDGVSVIVGTTGKPGSSTREHIRMPCFSPRELKTLLEDKQGTVALLFGKENHG 125

Query: 240 LRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYITQ 277
           L  +  E    +  +        M       N+S+A AV LY   
Sbjct: 126 LPNEILEKCGVVLSIPTSDDYPVM-------NLSHAVAVVLYELA 163


>gi|209542602|ref|YP_002274831.1| tRNA/rRNA methyltransferase SpoU [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530279|gb|ACI50216.1| tRNA/rRNA methyltransferase (SpoU) [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 258

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L       NIG   R+        +               +SASGA   +    + +
Sbjct: 18  VVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAATVHD 77

Query: 195 -LTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPK 243
            + DA+  +H             +T+  +      L Q      +  L+ G E  GL  +
Sbjct: 78  SVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGLDNE 137

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               A ++    +     +LN++ A  +  Y 
Sbjct: 138 DMARADALIRYPLNAAFMSLNLAQAVMIMAYE 169


>gi|82538817|ref|XP_723834.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478269|gb|EAA15399.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 339

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 86/245 (35%), Gaps = 18/245 (7%)

Query: 7   KKSEKIFSLK----DSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
           K+ +KI  +K    ++ Y  + +  +  K +    +KS    +    F+ G  T+     
Sbjct: 90  KEQKKIDYIKKNGENNEYLSISKRSKLMKYIIRLRKKSNFRKKNNAFFVKGTQTIINLSK 149

Query: 63  NPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIV------GKEAVHQGLAL 116
           + +  +  +L+      +   +        +  V    ++ I        K+  +  +A+
Sbjct: 150 DHNLTMEVILSNSKPFLKYFQNKCNK----LYYVNNDILNYIFLDSLKFMKDKNYDSVAI 205

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
              P +  T    +  + L+ LD +   +N+G IL  A + + D I          +  +
Sbjct: 206 VKIPNIENT-KTEKKIKFLLALDRIRYAYNLGKILNIAYSMNIDSIFYIHNTVDPYNHNV 264

Query: 177 AKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--LEQEIKNDKIALILG 234
                G    IPY  + +  +  +         I   ++   P    +   N  I  ILG
Sbjct: 265 MDITKGKHLFIPY-NVGSYNELNKFCEQNNLVPIVAHTNGMDPQSFXKNXTNQGICFILG 323

Query: 235 AEGKG 239
            E  G
Sbjct: 324 NESYG 328


>gi|325283787|ref|YP_004256328.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
 gi|324315596|gb|ADY26711.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus proteolyticus MRP]
          Length = 155

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 2/140 (1%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
                 L +VL       N+G + R+         +              ++    L+ +
Sbjct: 2   EAPGPLLHVVLFEPEKAGNVGNVARTCAVLGAALHLIRPYGFHLGDREFRRAVMDYLQGV 61

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +  + T     +     +    S+ +++   Q        L+LG E +GL P     
Sbjct: 62  ELHQHDSWTAFQSALPQTA-RVWAFSTHAQQYHTQAGFQRGDYLLLGPESRGL-PAWLRE 119

Query: 248 ATSMAHLHMPGIIKALNVSN 267
                 L  PG  ++LN+S 
Sbjct: 120 PLPTLKLPQPGTGRSLNLSV 139


>gi|183981185|ref|YP_001849476.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
 gi|183174511|gb|ACC39621.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium marinum M]
          Length = 154

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 4/113 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R+A A  C+  +            L ++     +        +LT A   +   
Sbjct: 14  NTGNAIRTAAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVHGSLTQAWDAL--L 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHM 256
             +    ++ +              L+ G E  GL   T   A  T    + M
Sbjct: 72  PARVFAFTAGASVTFSDVDFRPGDVLMFGPEPTGLDAATLADAHITQQVRIPM 124


>gi|148239933|ref|YP_001225320.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147848472|emb|CAK24023.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 229

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 25/150 (16%)

Query: 147 IGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           +G++ R    F  + + +   R +P+++  L  +  G          + L +AL      
Sbjct: 1   MGSVARLCANFGINDLRLVAPRCNPNDAQALRMAVHGQTVLHQASTFTTLLEALSDCQ-- 58

Query: 206 GFQTIGLSS---DSKKPLEQEIKNDK-----------IALILGAEGKGLRPKTQETATSM 251
             + +           PL+   +              +AL+ G E +GL  +    +  +
Sbjct: 59  --RVVASCGRIDHGDIPLQTTDQVMPWVGEGLKSGAQVALVFGREDRGLSNEELLLSHRV 116

Query: 252 AHLHMPGIIK---ALNVSNAAAVALYITQN 278
             L     +    +LN+S+A A+ L+  Q 
Sbjct: 117 VRL---HTVDHYPSLNLSHAVAIVLHDLQR 143


>gi|209964300|ref|YP_002297215.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
           centenum SW]
 gi|209957766|gb|ACI98402.1| RNA methyltransferase, TrmH family, group 1 [Rhodospirillum
           centenum SW]
          Length = 266

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 59/171 (34%), Gaps = 22/171 (12%)

Query: 119 APLLSPTLDAV-RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            P L+ +  A+      +++L       NIGA  R+ +      +          +    
Sbjct: 7   RPELAKSQAALNAQGGPVVILVEPQMGENIGACARAMLNCGLTELRLVNPRDGWPNEKAV 66

Query: 178 KSASGALEHIPYIRI-SNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQ 222
            +++GA E +   R+ +   +A+  +H         ++               ++     
Sbjct: 67  AASAGATEVLDRARVFTGTREAIADLHK----VYATAARVRDMVKDIVTPRRAARDLHAH 122

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                ++ ++ G E  GL       + +M  + +     +LN++ A  V L
Sbjct: 123 VAAGRRVGILFGPERTGLVNDDIVLSDTMISVPLNPGFSSLNLAQA--VLL 171


>gi|116334061|ref|YP_795588.1| rRNA methylase (SpoU class) [Lactobacillus brevis ATCC 367]
 gi|116099408|gb|ABJ64557.1| Predicted rRNA methylase (SpoU class) [Lactobacillus brevis ATCC
           367]
          Length = 170

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 144 PHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           P N G I R+         +I    +S  + A L ++     + +      NL   L  +
Sbjct: 13  PANTGNIARTCAGTDTILDLIKPLGFSV-DDAHLKRAGLDYWDKVDVRYHENLPAFLDTI 71

Query: 203 HSWG-FQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPG 258
                   +      D  +P  Q  ++D    + G E  GL  P  ++ A     +    
Sbjct: 72  SDLSQLYLVSKFADQDYTEPDYQVNEHDHY-FLFGKETTGLPEPFMRQHAEKCIRIPQDD 130

Query: 259 -IIKALNVSNAAAVALYI--TQNHF 280
             I+ALN+SN+AA+ +Y    Q  F
Sbjct: 131 THIRALNLSNSAAIVIYEVLRQQQF 155


>gi|124268025|ref|YP_001022029.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
 gi|124260800|gb|ABM95794.1| putative tRNA/rRNA methyltransferase protein [Methylibium
           petroleiphilum PM1]
          Length = 239

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 20/147 (13%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSP-SESAVLAKSASGALEHIPYIRI-S 193
           VL   + P N+GA  R+       D ++   R++           ASGA + +   R+ +
Sbjct: 10  VLVGTSHPGNVGAAARAMKVMGFSDLVLVAPRHADVLVQEDTVALASGAADILVRARVVA 69

Query: 194 NLTDALQKMHSWGFQTIGLSS----------DSKKPLEQEIKNDK--IALILGAEGKGLR 241
            L++AL+     G      ++           + + L  E+   +  +  + G+E  GL 
Sbjct: 70  TLSEALE-----GVTHACATAMTPRDFGPRTHAPRALFPELAAGRQRVGFVFGSERYGLS 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +      S   +  P    +LN++ A
Sbjct: 125 NEDVYRCHSCLSIPTPADYGSLNLAQA 151


>gi|295426405|ref|ZP_06819055.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
 gi|295063773|gb|EFG54731.1| RNA methyltransferase [Lactobacillus amylolyticus DSM 11664]
          Length = 186

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +      +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVEIHMHDDL 64

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L+ +  +   +     SS +   ++    N     + G E  GL     +E      
Sbjct: 65  EAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGLPETFMREYYDRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+  N++N+ A+ L      
Sbjct: 125 RIPMSNNIRCYNLANSVAMVLLEALRQ 151


>gi|320335161|ref|YP_004171872.1| TrmH family RNA methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319756450|gb|ADV68207.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           maricopensis DSM 21211]
          Length = 261

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 16/153 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI- 192
           L +VL     P N+G+  R+ +      +          S+     A  A   +   R+ 
Sbjct: 3   LAVVLVSPKHPGNVGSAARAMLNMGASELRLVAPRCDHLSSEARALAVHAAGLLENARVY 62

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----------ALILGAEGKGLRP 242
             L +AL          +G S+  +  L        +          AL+ G E  GL  
Sbjct: 63  GTLAEALADRDVA----VGTSARERSDLPPPRTPATLRPMVRAAARPALVFGPEETGLSS 118

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              +   +   +   G   +LN++ A  +  Y 
Sbjct: 119 DDLQLCQATVRIP-TGEYASLNLAQAVLLVCYE 150


>gi|88808981|ref|ZP_01124490.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
 gi|88786923|gb|EAR18081.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 7805]
          Length = 244

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIR 191
            L +VL     P N+G++ R    F  D + +   R   S+   +  +  G         
Sbjct: 2   GLAVVLVEPAGPLNVGSVARLCANFGIDDLRLVAPRCRISDEEAVRMAVHGQTVLRKAKT 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSS---DSKKPLEQEIKNDK-----------IALILGAEG 237
              L +A+        + +           PL+   +              +AL+ G E 
Sbjct: 62  FETLLEAIGDCQ----RVVASCGRIDHGHIPLQTSDQAMPWVEEGLRSGAQVALVFGRED 117

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +GL  +    +  +  L       +LN+S+A AV L+  Q 
Sbjct: 118 RGLSNEELLLSQRVVRLQTDDQYPSLNLSHAVAVVLHDLQR 158


>gi|148244602|ref|YP_001219296.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326429|dbj|BAF61572.1| RNA methyltransferase, TrmH family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 247

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 23/161 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +V+ +  +P NIGA  R+    +   +          SA     ASGA + +   I   +
Sbjct: 14  VVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPKGYP-SATATARASGADDVLSDAIVCES 72

Query: 195 LTDALQ--------KMHSWGFQ-----TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           L +AL+               +      +G  +  +K +   I + ++A+I G E  GL 
Sbjct: 73  LEEALKGTHLVIGASARQRNIKWRQMDVVGTCNKIQKTIT--IDSQEVAVIFGTEKSGLT 130

Query: 242 PKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQNHF 280
            K  +    +  +   G     +LNV  A+A+ ++  QN+ 
Sbjct: 131 NKELDLCQILMTIP--GNPDYFSLNV--ASAIQVFAYQNYI 167


>gi|319405661|emb|CBI79284.1| RNA methyltransferase [Bartonella sp. AR 15-3]
          Length = 276

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           ++VL       NIG + R+   F    +   K      +  +  +AS A   I   +   
Sbjct: 16  IIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVQATASKADHIINDTLIFD 75

Query: 194 NLTDALQKMH---------SWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243
            L DA+  ++           GF+T+  + ++   L   E    K  ++ G E  GL+  
Sbjct: 76  TLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFGRERWGLKNN 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               A  +    +     +LN++ A  V L
Sbjct: 136 EISLADEIITFPVNPAFASLNIAQA--VLL 163


>gi|291296222|ref|YP_003507620.1| RNA methyltransferase TrmH family, group 1 [Meiothermus ruber DSM
           1279]
 gi|290471181|gb|ADD28600.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus ruber DSM
           1279]
          Length = 257

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 29/164 (17%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTK---------RYSPSESAVLAKSASGALEH 186
           +VL    +P NIGA  R+   F    +                P   ++  + A  A + 
Sbjct: 9   IVLVGSQEPMNIGAAARAMQNFGISDLWLVAPEPRVREDLARHPG-GSLAYRLAVHAEDV 67

Query: 187 IPYIRISN-LTDALQKMHSWGFQTIGLSSDSKKPLE--------------QEIKNDKIAL 231
           +  +R+ + L +A+          +G +   ++                 Q     ++A+
Sbjct: 68  LDRMRVVDTLPEAVADAR----LVVGTTVREREIYTGPVVGPRPMALRVAQVAPRGRVAV 123

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + G E  GL     + +  +  +       +LN++ A  +  Y 
Sbjct: 124 VFGRETSGLTTDEIDLSQLIVRIPTSPRQPSLNLAQAVLLLCYE 167


>gi|322369305|ref|ZP_08043870.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
           DX253]
 gi|320551037|gb|EFW92686.1| hypothetical protein ZOD2009_07449 [Haladaptatus paucihalophilus
           DX253]
          Length = 249

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 20/150 (13%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAV---LAKSASGALEHI-PYIRISNLTDAL 199
           P NIG I R+   F  D +   K  +P E          A  A E + P        + +
Sbjct: 13  PGNIGTIARAMKNFGMDDL---KLVNPPEFGRDSEAYGFAGQAREDVLPNYDEVTFDELI 69

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDK------------IALILGAEGKGLRPKTQET 247
           +  H+ G  T   + D+   +    K  +              LI G E  GL  +    
Sbjct: 70  ENYHTVGM-TATTNEDASHHVRFPFKTPRELAESLQDVTTDTVLIFGREANGLTNEELSR 128

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +  +       ALN+  AA V LY  +
Sbjct: 129 IDEVCSIPASASYPALNLGQAATVTLYELR 158


>gi|159028241|emb|CAO88051.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 266

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 18/146 (12%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKMHS 204
           N+G+  R         +I         +    + A   +E +    +++ L +ALQ  H 
Sbjct: 27  NVGSTARIMRNMGLSRLIIVNPACDILAEEARRMAVHGIEVLENCSQVATLGEALQGCH- 85

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIAL------------ILGAEGKGLRPKTQETATSMA 252
              + I  +S  +  L   ++  + AL            I G E +GL       A    
Sbjct: 86  ---RIIATTSKPRH-LNTPLETPRTALPWLLTPNLESALIFGPEDRGLSNSELNHAQRFV 141

Query: 253 HLHMPGIIKALNVSNAAAVALYITQN 278
            +       +LN++ A AV  Y    
Sbjct: 142 GIPANPQYSSLNLAQAVAVCSYELYQ 167


>gi|17987077|ref|NP_539711.1| SpoU rRNA methylase family [Brucella melitensis bv. 1 str. 16M]
 gi|23502073|ref|NP_698200.1| RNA methyltransferase [Brucella suis 1330]
 gi|62290107|ref|YP_221900.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82700030|ref|YP_414604.1| tRNA/rRNA methyltransferase SpoU [Brucella melitensis biovar
           Abortus 2308]
 gi|161619151|ref|YP_001593038.1| RNA methyltransferase [Brucella canis ATCC 23365]
 gi|163843461|ref|YP_001627865.1| RNA methyltransferase [Brucella suis ATCC 23445]
 gi|189024345|ref|YP_001935113.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225852692|ref|YP_002732925.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
 gi|254689416|ref|ZP_05152670.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|254693901|ref|ZP_05155729.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|254697551|ref|ZP_05159379.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701936|ref|ZP_05163764.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|254704481|ref|ZP_05166309.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|254706623|ref|ZP_05168451.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|254710267|ref|ZP_05172078.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|254714264|ref|ZP_05176075.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|254717700|ref|ZP_05179511.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|254730445|ref|ZP_05189023.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|256031761|ref|ZP_05445375.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|256044846|ref|ZP_05447750.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113751|ref|ZP_05454555.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|256159931|ref|ZP_05457649.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|256255162|ref|ZP_05460698.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|256257662|ref|ZP_05463198.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260168895|ref|ZP_05755706.1| RNA methyltransferase [Brucella sp. F5/99]
 gi|260754938|ref|ZP_05867286.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260758154|ref|ZP_05870502.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260761980|ref|ZP_05874323.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883948|ref|ZP_05895562.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|261214190|ref|ZP_05928471.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261219543|ref|ZP_05933824.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261222359|ref|ZP_05936640.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261314083|ref|ZP_05953280.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261317829|ref|ZP_05957026.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261322038|ref|ZP_05961235.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261752502|ref|ZP_05996211.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261755161|ref|ZP_05998870.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|265988859|ref|ZP_06101416.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|265991274|ref|ZP_06103831.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995110|ref|ZP_06107667.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|265998324|ref|ZP_06110881.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|294852531|ref|ZP_06793204.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|17982735|gb|AAL51975.1| spou family of rRNA methylases [Brucella melitensis bv. 1 str. 16M]
 gi|23348030|gb|AAN30115.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis 1330]
 gi|62196239|gb|AAX74539.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus bv. 1
           str. 9-941]
 gi|82616131|emb|CAJ11174.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
           family, group 1 [Brucella melitensis biovar Abortus
           2308]
 gi|161335962|gb|ABX62267.1| RNA methyltransferase, TrmH family, group 1 [Brucella canis ATCC
           23365]
 gi|163674184|gb|ABY38295.1| RNA methyltransferase, TrmH family, group 1 [Brucella suis ATCC
           23445]
 gi|189019917|gb|ACD72639.1| tRNA/rRNA methyltransferase (SpoU) [Brucella abortus S19]
 gi|225641057|gb|ACO00971.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
           ATCC 23457]
 gi|260668472|gb|EEX55412.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260672412|gb|EEX59233.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675046|gb|EEX61867.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260873476|gb|EEX80545.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|260915797|gb|EEX82658.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|260920943|gb|EEX87596.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260924632|gb|EEX91200.1| RNA methyltransferase [Brucella ceti M13/05/1]
 gi|261294728|gb|EEX98224.1| RNA methyltransferase [Brucella ceti M644/93/1]
 gi|261297052|gb|EEY00549.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
 gi|261303109|gb|EEY06606.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261742255|gb|EEY30181.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744914|gb|EEY32840.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552792|gb|EEZ08782.1| RNA methyltransferase [Brucella ceti M490/95/1]
 gi|262766223|gb|EEZ12012.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|263002058|gb|EEZ14633.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264661056|gb|EEZ31317.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
 gi|294821120|gb|EFG38119.1| tRNA/rRNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|326409214|gb|ADZ66279.1| tRNA/rRNA methyltransferase (SpoU) [Brucella melitensis M28]
 gi|326538923|gb|ADZ87138.1| RNA methyltransferase, TrmH family, group 1 [Brucella melitensis
           M5-90]
          Length = 276

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L +   P NIG + R+   F    +          S     +AS A   I   +   +
Sbjct: 17  IILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYDD 76

Query: 195 LTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKT 244
           L  A+  ++           GF+ +  + ++   L +  K   K  ++ G E  GL  + 
Sbjct: 77  LPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFGLSNEE 136

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A  +    +     +LN++ A  V L
Sbjct: 137 VGLADELLTFPVNPAFASLNIAQA--VLL 163


>gi|116334955|ref|YP_802450.1| hypothetical protein CRP_053 [Candidatus Carsonella ruddii PV]
 gi|116235236|dbj|BAF35084.1| hypothetical protein [Candidatus Carsonella ruddii PV]
          Length = 132

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 19/141 (13%)

Query: 141 VNDPHNIGAILRSAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIRISNLTDAL 199
           V +  NI + +R+   F+   II      S   +          +  + +I+ +N     
Sbjct: 4   VKNFGNINSCIRTCYMFNVYVIIKNIYINSFVINYNNIIFIKNNILLLKFIKKTNC---- 59

Query: 200 QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                     + LS  S   L       K  +++G E  G+       +  +  +     
Sbjct: 60  ---------IVSLSISSYFVLNNFKLLKKFVIVIGNEKYGINNSIILHSDFILKIKSYRK 110

Query: 260 IKALNVSNAAAVALYITQNHF 280
            K+LN+S  + + LY    HF
Sbjct: 111 -KSLNLSIVSGITLY----HF 126


>gi|78048137|ref|YP_364312.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036567|emb|CAJ24258.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 254

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL     P NIGA  R+         ++     +        + ++GA      +  + +
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAE---DVLSQAPI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L +  +     IG ++ +++   +E+  D+              +A + G E  GL 
Sbjct: 65  FATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLT 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +  H+       +LN++ A  V  Y  +
Sbjct: 125 NDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|145636678|ref|ZP_01792345.1| rRNA methylase [Haemophilus influenzae PittHH]
 gi|145270204|gb|EDK10140.1| rRNA methylase [Haemophilus influenzae PittHH]
 gi|301169483|emb|CBW29084.1| predicted rRNA methylase [Haemophilus influenzae 10810]
          Length = 160

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 8/150 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPKTQETA--TSM 251
              L+       +   L++       Q     K+   L+ G E +G+             
Sbjct: 64  EAFLESEKPK--RLFALTTKGSPAHSQVKF--KLGDYLMFGPETRGIPMSILNEMPMEQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    +++N+SN+ AV +Y       
Sbjct: 120 IRIPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|258543648|ref|YP_003189081.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634726|dbj|BAI00702.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637782|dbj|BAI03751.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640836|dbj|BAI06798.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643891|dbj|BAI09846.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646946|dbj|BAI12894.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649999|dbj|BAI15940.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652989|dbj|BAI18923.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656043|dbj|BAI21970.1| ribosomal large subunit 23S rRNA methyltransferase SpoU
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 256

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 12/163 (7%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L+ + N+  +++L       NIG   R+        +               +++SGA
Sbjct: 8   APLEPIGNTP-VVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRTSSGA 66

Query: 184 LEHIPYIRIS-NLTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALI 232
              +    +  ++ DA+  +H             + +  +      L        K+ L+
Sbjct: 67  DRILEAATVHESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLM 126

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            G E  GL  +    A ++    +     +LN++ A  +  Y 
Sbjct: 127 FGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYE 169


>gi|323339770|ref|ZP_08080040.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644]
 gi|323092849|gb|EFZ35451.1| RNA methyltransferase [Lactobacillus ruminis ATCC 25644]
          Length = 170

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    + +  +       ++   + ++     + +      NL + L+ M 
Sbjct: 13  PANTGNIARTCAGTNTELHLIKPLGFSTDDKYMKRAGLDYWDKVKITYHENLPEFLESMD 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND---KIALILGAEGKGLR----PKTQETATSMAHLHM 256
               +   +S  +++        D       + G E  GL      K ++       +  
Sbjct: 73  END-ELYVVSKFAERTYADVDYTDESKNHYFLFGKETTGLPEIFMRKYEKKC---IRIPQ 128

Query: 257 P-GIIKALNVSNAAAVALYITQNH 279
               I+ALN+SN AA+ +Y     
Sbjct: 129 NDRNIRALNLSNTAAIVIYEALRQ 152


>gi|254416767|ref|ZP_05030517.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176507|gb|EDX71521.1| RNA methyltransferase, TrmH family, group 1 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 262

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 16/143 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI----RISNLTDALQK 201
           N+G++ R       + +     +    +   +++   A+  +  +    +++ L +AL+ 
Sbjct: 18  NVGSVARVMKNMGLNQLWLVNPHC---NPRASEARQMAVHGVEVLESAQQVATLPEALEG 74

Query: 202 MHSWGFQTIGLSSDSKKPLEQEIKNDK--------IALILGAEGKGLRPKTQETATSMAH 253
                  T   +      LE                ALI G E +GL       A     
Sbjct: 75  CQRA-IATTARTRHLPTTLEPPRLALPWLLAENITSALIFGPEDRGLSNDELNYAQRFVC 133

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           +       +LN++ A AV  Y  
Sbjct: 134 IPANPEYPSLNLAQAVAVCCYEL 156


>gi|312372950|gb|EFR20796.1| hypothetical protein AND_19439 [Anopheles darlingi]
          Length = 789

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 10/167 (5%)

Query: 71  LLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR 130
           LL  +N    +   +  P    V T   +   K +G   ++ G AL+ A L   T     
Sbjct: 209 LLTLENIFHNIPKVSGTPSEDVVNTSILKECFKTLGMSEINLGSALQFAELPDHT----- 263

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY- 189
              L+++   VN   N+G + R++  F+   ++        ++      +  A + +   
Sbjct: 264 -DGLIVIASLVNRAPNLGGLARTSEIFAVKQLVINSL-QDIDNKEFQALSMTAEKWLNIG 321

Query: 190 -IRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILG 234
            ++   + + L++M + G+  +G   +   KP++Q     K  L+LG
Sbjct: 322 ELKSHKIVEYLEEMKAKGYAIVGAEQTTGSKPIQQLSFPKKSILVLG 368


>gi|298674492|ref|YP_003726242.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
           evestigatum Z-7303]
 gi|298287480|gb|ADI73446.1| RNA methyltransferase, TrmH family, group 1 [Methanohalobium
           evestigatum Z-7303]
          Length = 232

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 35/157 (22%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G+I R    F    ++                +S A + +   +++N     + +  
Sbjct: 16  GNVGSIARVMKNFGLCELVLVNPC--KLKGEARAMSSHARDILENAKVTNTFK--EAVKD 71

Query: 205 WGFQTIGLSSDSKKPLEQEIKN----------------DKIALILGAEGKGLRPKTQETA 248
                +G +  +    ++ I+N                 K+A++ G E  G         
Sbjct: 72  ASL-VVGTTGMTSSKDDEHIRNPSYTPKELKNRLEGMDGKVAILFGREDNGFTNDELRLC 130

Query: 249 TSMAHLH-------MPGIIKALNVSNAAAVALYITQN 278
             + H+        M       N+S++AAV  Y   N
Sbjct: 131 DMIVHIPANEEYPIM-------NISHSAAVIFYELSN 160


>gi|148560334|ref|YP_001259115.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|225627665|ref|ZP_03785702.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
           Cudo]
 gi|237815613|ref|ZP_04594610.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
           2308 A]
 gi|260546656|ref|ZP_05822395.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260565552|ref|ZP_05836036.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260566275|ref|ZP_05836745.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261758385|ref|ZP_06002094.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|265999435|ref|ZP_05466349.2| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|297248503|ref|ZP_06932221.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|148371591|gb|ABQ61570.1| RNA methyltransferase, TrmH family, group 1 [Brucella ovis ATCC
           25840]
 gi|225617670|gb|EEH14715.1| RNA methyltransferase, TrmH family, group 1 [Brucella ceti str.
           Cudo]
 gi|237788911|gb|EEP63122.1| RNA methyltransferase, TrmH family, group 1 [Brucella abortus str.
           2308 A]
 gi|260095706|gb|EEW79583.1| tRNA/rRNA methyltransferase [Brucella abortus NCTC 8038]
 gi|260151620|gb|EEW86714.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260155793|gb|EEW90873.1| tRNA/rRNA methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261738369|gb|EEY26365.1| tRNA/rRNA methyltransferase [Brucella sp. F5/99]
 gi|263093946|gb|EEZ17880.1| tRNA/rRNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175672|gb|EFH35019.1| tRNA/rRNA methyltransferase [Brucella abortus bv. 5 str. B3196]
          Length = 291

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L +   P NIG + R+   F    +          S     +AS A   I   +   +
Sbjct: 32  IILVNPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYDD 91

Query: 195 LTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKT 244
           L  A+  ++           GF+ +  + ++   L +  K   K  ++ G E  GL  + 
Sbjct: 92  LPSAIADLNFVYATTARERDGFKPVRSAMEAGNALRRRFKTGEKTGILFGRERFGLSNEE 151

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A  +    +     +LN++ A  V L
Sbjct: 152 VGLADELLTFPVNPAFASLNIAQA--VLL 178


>gi|289665695|ref|ZP_06487276.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 254

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 18/155 (11%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHI---PYIRI 192
           VL     P NIGA  R+         ++     +        + ++GA + +   P    
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAEDVLGEAPIF-- 65

Query: 193 SNLTDALQKM--------HSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRP 242
           + L +A+            +       L  D           +   +A + G E  GL  
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPDEGAQRALAKAGEPAEVAFVFGRERTGLTN 125

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +   +  H+       +LN++ A  V  Y  +
Sbjct: 126 DELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|262274801|ref|ZP_06052612.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
 gi|262221364|gb|EEY72678.1| tRNA:Cm32/Um32 methyltransferase [Grimontia hollisae CIP 101886]
          Length = 243

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        E  V  ++ + A         + +
Sbjct: 7   IVLVGTTHSGNIGSAARAMKVMGLKHMVL----VAPECKVDGQAIALAAGASDIANNARI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D +++  +     IG S+ ++                 +E     +A + G E  GL  
Sbjct: 63  VDTVEEAVADCALVIGTSARNRSLEWPMLDPRECGIKAIEEAPQHPVAFVFGRERTGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A     Y  +
Sbjct: 123 EELQACNFHVAIPANPAYSSLNLAMAVQTLCYEAR 157


>gi|332796504|ref|YP_004458004.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
           W1]
 gi|332694239|gb|AEE93706.1| RNA methyltransferase, TrmH family, group 1 [Acidianus hospitalis
           W1]
          Length = 228

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL      +N+G + R    F  D +   +      ++ +  SA G         + 
Sbjct: 2   LRVVLVEPEGEYNVGFVARLCKNFEVDELFIVRPKCD-INSAIKFSAKGESILRNAKIVD 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGKGLR 241
           N  DAL+ +       I  SS +               L   +K++KIALI G E  GL 
Sbjct: 61  NYDDALKDVEIK----IATSSIANNKGDILRKAVFPWELPSVMKSEKIALIFGRESVGLT 116

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            +    A  +  +        LN+S+A  + LY 
Sbjct: 117 REEISKADFLLFIPANPNYPTLNLSHAVGIVLYE 150


>gi|121611165|ref|YP_998972.1| tRNA/rRNA methyltransferase SpoU [Verminephrobacter eiseniae
           EF01-2]
 gi|121555805|gb|ABM59954.1| tRNA/rRNA methyltransferase (SpoU) [Verminephrobacter eiseniae
           EF01-2]
          Length = 266

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 24/165 (14%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--SAVLAKSASGALEHIPYIR-IS 193
           VL + +   N+GA+ R+      D ++      P+        + ASGAL+ +   R ++
Sbjct: 6   VLINTSHAGNVGAVARAMKTMGFDDLVLVAPRWPNVLRHEETIQRASGALDLLRQARIVA 65

Query: 194 NLTDALQ----------KMHSWGFQTIG------LSSDSKKPLEQ-----EIKNDKIALI 232
            L  AL               +G  T             ++P+         +   +A +
Sbjct: 66  GLDQALDGISHLCATAMTARDFGPPTTTPRAHFETLLKKERPVHDSSAPAATRPTGVAFL 125

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            G+E  G+             +       +LN+  A  V  Y  +
Sbjct: 126 FGSERFGMSNADVYRCHVTLSIPTQPGFGSLNLGAAVQVIAYEWR 170


>gi|71416815|ref|XP_810386.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874908|gb|EAN88535.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 532

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG---IITTKR----YSPSES 173
           LL+   +   +S L + L+      N    +R+ + F        ++ KR    +S    
Sbjct: 40  LLNGWPNRCLHSHLFVGLEGCTSAFNAMNSIRTCMHFGTTFPPFFLSLKRAEDIHSLHPR 99

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMH----SWG-FQTIGLS--SDSKKPLEQEIKN 226
               K+ S  L   P   +S +    + +     S+G    + L   ++  + +     +
Sbjct: 100 CTARKTNSEDLTR-PGATLSQVARFGEDLFLDDPSFGQIPLVALENYTNRSESILSCRLS 158

Query: 227 DKIALILGAEGKGLRPKTQETATS----------MAHLHMPGIIKALNVSNAAAVALYIT 276
               +++G E  G+  K  +              + ++   G I +LNV  +  +AL+  
Sbjct: 159 SPARIVVGHENNGVSRKYIDKMDESGRKGCRAERVVYVPQYGTISSLNVVTSMGIALFYA 218


>gi|319775295|ref|YP_004137783.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
 gi|317449886|emb|CBY86097.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3047]
          Length = 160

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++       Q        L+ G E +G+               
Sbjct: 64  EAFLESEKPK--RLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y      +
Sbjct: 122 IPMTANSRSMNLSNSVAVTVYEAWRQLS 149


>gi|329897042|ref|ZP_08271814.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
 gi|328921482|gb|EGG28868.1| tRNA:Cm32/Um32 methyltransferase [gamma proteobacterium IMCC3088]
          Length = 258

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 60/158 (37%), Gaps = 19/158 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   + P NIG + R+        ++        +     ++AS A + +   R+ + 
Sbjct: 7   IVLVEPSHPGNIGGVARAMKNMGFTNLVLVAPRRFPDEEATWRAAS-AADVLDGARVVAT 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGLR 241
           + +A+   H      +G S+  ++              +  E    ++A++ G E +GL 
Sbjct: 66  VEEAIADCH----FVVGTSARERRIPWPILDSRRAALQIRGEAARGQVAMLFGREDRGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               +      ++      ++LN++ A  +  Y  +  
Sbjct: 122 NDELKLCDLHVNVPTDEAYRSLNLAMAVQILCYELRMQ 159


>gi|86145019|ref|ZP_01063351.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218677041|ref|YP_002395860.1| rRNA methyltransferase [Vibrio splendidus LGP32]
 gi|85837918|gb|EAQ56030.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218325309|emb|CAV27330.1| rRNA methyltransferase [Vibrio splendidus LGP32]
          Length = 170

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 10/152 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S + + L +   P N+GA++R+A  +  D +  T +      A        A   IP  
Sbjct: 3   KSHVTIGLTNPKSPTNVGAVMRAAGCYQVDEVKYTGQRYDKA-AKFHTDTKSATRTIPLT 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            + +  D L          + L+ +   PL +    +    I G E   +     + A  
Sbjct: 62  GVESFLDNLNS--ETKIVCVELA-EGATPLPRFKHPENAIYIFGPEDGSISQDVADRADH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 119 VVYVPTVGCM---NLAATVNVLLY---DRLAK 144


>gi|332141980|ref|YP_004427718.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552002|gb|AEA98720.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 261

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 23/161 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L + +   NIG+  R+        +          +    ++++ A      +  + +
Sbjct: 7   IILVNTSHTGNIGSTARAMKTMGLSSLYL----VDPVNEPDGQASALAAGAGDVLANAKI 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
              L++ +   G   +G S+ S+                 QE++   +AL+ G E  GL 
Sbjct: 63  VGTLEEAVKDCGL-VVGTSARSRTHSWPMLGPRDCGEKLVQEVEKYPVALVFGRENSGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQNHF 280
            +  +       +       +LN+  AAAV    Y  +  F
Sbjct: 122 NEELQQCHFHMCIPANPEYSSLNL--AAAVQTLCYEIRMAF 160


>gi|315123535|ref|YP_004065541.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp.
           SM9913]
 gi|315017295|gb|ADT70632.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas sp.
           SM9913]
          Length = 171

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 12/140 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+A  +    +  T     +       +    ++ IP     NL  +     
Sbjct: 16  PTNVGGVLRAAGCYDAQQVFFTGNRYLNAQKFHTDT-KNVVQRIPLTATDNLASS----K 70

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G + + +   +   PL +    +    + G E   +     +    + ++   G +  
Sbjct: 71  PQGAKVVVIELIEGATPLPEFTHPENAFYVFGPEDGSVPKDVLKWCDEVVYIPTIGCM-- 128

Query: 263 LNVSNAAAVALYITQNHFAK 282
            N++    V LY   +  AK
Sbjct: 129 -NLAATCNVVLY---DRLAK 144


>gi|294339583|emb|CAZ87942.1| putative RNA methyltransferase TrmH, group 1 [Thiomonas sp. 3As]
          Length = 260

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 30/184 (16%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSES 173
           A   AP L  T         + VL   + P N+GA  R+        + +   R++   +
Sbjct: 11  AAACAPSLDDT---------VFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLT 61

Query: 174 -AVLAKSASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLS---------SDSKKPLEQ 222
                  ASGA + +   ++   L DA+      G   + LS           + + L Q
Sbjct: 62  QPETLAFASGAEDVLKTAQVHGELGDAVA---DCGV-VVALSARVRDFGPPLHTPEWLPQ 117

Query: 223 -----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  +  ++A + G+E  GL         ++  +       +LN++ A  V  +  +
Sbjct: 118 LAQRSAEQGRRVAFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWR 177

Query: 278 NHFA 281
               
Sbjct: 178 KEVG 181


>gi|313680728|ref|YP_004058467.1| RNA methyltransferase, trmh family, group 1 [Oceanithermus
           profundus DSM 14977]
 gi|313153443|gb|ADR37294.1| RNA methyltransferase, TrmH family, group 1 [Oceanithermus
           profundus DSM 14977]
          Length = 240

 Score = 53.5 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 18/155 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL    +P N+GA  R+   F  + ++      P + A    +  GA + +   R    
Sbjct: 4   VVLVEPREPRNVGAAARAMKNFGLEELVLVNPERPLDEAAYRLATRGAADVLEQAR---T 60

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--------------DKIALILGAEGKGLR 241
              L +  +     +  S+ +++    E+                  +AL+ G E  GL 
Sbjct: 61  VATLDEALAGAVYVVATSARAREGYAGEVCTPREGAPRVRAMTAEGPVALLFGRENFGLS 120

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +  + A ++  +   G   +LN++ A  +  Y  
Sbjct: 121 NEEMDRAHAVWRIPTGGYA-SLNLAQAVLLVAYEV 154


>gi|158522634|ref|YP_001530504.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158511460|gb|ABW68427.1| RNA methyltransferase, TrmH family, group 1 [Desulfococcus
           oleovorans Hxd3]
          Length = 260

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 32/173 (18%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHI-- 187
           + + ++L     P NIGA  R+          ++  + + P     + K+A+ A   +  
Sbjct: 12  AGITIILVRPRIPENIGACCRAMKNMGLSRLKVVAPEAWDP---VRIMKTATHACRDVVE 68

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILG 234
               + +   A+           G ++   +  +  +                 +A++ G
Sbjct: 69  KIEIVGDTATAVSPFS----YIAGTTARMGRQRQMVLSPGGFAEKAVTLCRENPVAVMFG 124

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT-------QNHF 280
            E +GL  +  +   ++ H+       +LN++ A  V  Y         Q+HF
Sbjct: 125 PEDRGLENEDLQYCHNLVHIP-TSEFSSLNLAQAVLVICYELFGAARPNQDHF 176


>gi|126659046|ref|ZP_01730187.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
 gi|126619703|gb|EAZ90431.1| RNA methyltransferase TrmH, group 1 [Cyanothece sp. CCY0110]
          Length = 248

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 14/154 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N+G++ R     S + +   K +              A+  I  +  S +
Sbjct: 11  IVLVEPAGPLNVGSVARVMKNMSLNQLFLVKPHCDRLGEEAR---LMAVHGIDVLEKSQV 67

Query: 196 TDALQKMHSWGFQTIGLSSDS----------KKPLEQEIKND-KIALILGAEGKGLRPKT 244
            D + +      + I  +  S          +  L   + +D   ALI G E +GL  + 
Sbjct: 68  VDTIPQALQGCHRIIATTGRSLSLPTHLETPRNALPWLLTDDLNTALIFGPEDRGLNNEE 127

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              A     +       +LN++ A AV  Y    
Sbjct: 128 LSYAQRFVCIPANSDYSSLNLAQAVAVCSYELYQ 161


>gi|52841974|ref|YP_095773.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629085|gb|AAU27826.1| RNA methyltransferase [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 257

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL   + P NIG+  R+        +      S  +     + A+GA + +    ++N 
Sbjct: 8   IVLVSTSHPGNIGSTARAMKTMGLSTLYLVNPKSFPD-LKAKEMAAGADDVLDAAVVTNT 66

Query: 195 LTDAL--------QKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           L +AL              G    GL   S  + + Q+  N ++A++ G E  GL  +  
Sbjct: 67  LDEALIGCQLILGTSARPRGLSLPGLIPASCAELINQQSGNTQVAIVFGREHAGLTNEEL 126

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  ++       +LN++ A  +  Y  +
Sbjct: 127 LKCHYHINIPSNPEYSSLNLAQAVQIIAYELR 158


>gi|115372778|ref|ZP_01460084.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823440|ref|YP_003955798.1| s-adenosyl-l-methionine dependent tRNA/rRNA family protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|115370259|gb|EAU69188.1| CspR protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396512|gb|ADO73971.1| S-adenosyl-L-methionine dependent tRNA/rRNA family protein
           [Stigmatella aurantiaca DW4/3-1]
          Length = 167

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G + R         I+            L ++     + +    
Sbjct: 7   RPLHLVLVSPQIPPNTGNVARLCAVTGSRLILIEPLGFSIADRDLKRAGLDYWDKVFLKL 66

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-ATS 250
                  L+   +        S+ +   L          L+ G+E  GL  +     +  
Sbjct: 67  YPTYPAYLEDFPAARRWLF--SARAPTSLYAARFEAGDHLVFGSEVTGLPAEVMAGGSGQ 124

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+S +  +A Y     
Sbjct: 125 SVTIPMLEERRSLNLSTSVGIATYEALRQ 153


>gi|308181009|ref|YP_003925137.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308046500|gb|ADN99043.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 170

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 16/148 (10%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+         +        +   L ++     + +     ++L D L  + 
Sbjct: 13  PANTGNIARTCAGTDTALHLIEPLGFKIDDKHLKRAGLDYWDSVDITYHADLQDFLASIP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLR-PKTQETATSMAHLHMPG 258
               Q   +S  ++        +D        + G E  GL  P  ++       +    
Sbjct: 73  DLN-QLYLVSKFAEHDYTDVDYSD-TGKDHYFLFGKETTGLPEPFMRKYPEKAIRIPQD- 129

Query: 259 IIKA----LNVSNAAAVALYI--TQNHF 280
              +    LN+SN+AA+ +Y    Q  F
Sbjct: 130 --DSHIRALNLSNSAAIVIYEALRQQQF 155


>gi|300768854|ref|ZP_07078748.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|300493587|gb|EFK28761.1| rRNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 175

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 16/148 (10%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+         +        +   L ++     + +     ++L D L  + 
Sbjct: 18  PANTGNIARTCAGTDTALHLIEPLGFKIDDKHLKRAGLDYWDSVDITYHADLQDFLASIP 77

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLR-PKTQETATSMAHLHMPG 258
               Q   +S  ++        +D        + G E  GL  P  ++       +    
Sbjct: 78  DLN-QLYLVSKFAEHDYTDVDYSD-TGKDHYFLFGKETTGLPEPFMRKYPEKAIRIPQD- 134

Query: 259 IIKA----LNVSNAAAVALYI--TQNHF 280
              +    LN+SN+AA+ +Y    Q  F
Sbjct: 135 --DSHIRALNLSNSAAIVIYEALRQQQF 160


>gi|226946081|ref|YP_002801154.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
 gi|226721008|gb|ACO80179.1| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii DJ]
          Length = 258

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL + + P NIG   R+        +          S  +A+++ GA + +   ++ + 
Sbjct: 8   VVLVNTSHPGNIGGAARAMRNMGLSRLYLVAPEDFPSSEAVARAS-GATDILDNAQVVAT 66

Query: 195 LTDAL--------QKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L +AL                    L     +   LEQ  +  ++AL+ G E  GL  + 
Sbjct: 67  LEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAGLTNEE 126

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +      H+       +LN++ A  V +Y  +
Sbjct: 127 LQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVR 159


>gi|117618072|ref|YP_856281.1| RNA methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559479|gb|ABK36427.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 241

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + +   N+G+  R+        ++     +  +       A+GA + +   RI + 
Sbjct: 7   IVLVNTSHTGNMGSAARAMKTMGLSQMVLVDPQAQPDDN-AYALAAGASDLLANARIVST 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRP 242
            D  + +   G   IG S+ S+      +                 +AL+ G E  GL  
Sbjct: 66  LD--EAIADCGL-VIGTSARSRTLSWPMLDPREAGEKLVTEGMQHPVALVFGRERTGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +       +       +LN++ A     Y  + H+ +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQTLCYEVRMHWLQ 162


>gi|28378810|ref|NP_785702.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254557015|ref|YP_003063432.1| rRNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|28271647|emb|CAD64553.1| rRNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|254045942|gb|ACT62735.1| rRNA methyltransferase [Lactobacillus plantarum JDM1]
          Length = 170

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 16/148 (10%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+         +        +   L ++     + +     ++L D L  + 
Sbjct: 13  PANTGNIARTCAGTDTALHLIEPLGFKIDDKHLKRAGLDYWDSVDITYHADLQDFLASIP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLR-PKTQETATSMAHLHMPG 258
               Q   +S  ++        +D        + G E  GL  P  ++       +    
Sbjct: 73  DLN-QLYLVSKFAEHDYTDVDYSD-TGKDHYFLFGKETTGLPEPFMRKYPEKAIRIPQD- 129

Query: 259 IIKA----LNVSNAAAVALYI--TQNHF 280
              +    LN+SN+AA+ +Y    Q  F
Sbjct: 130 --DSHIRALNLSNSAAIVIYEALRQQQF 155


>gi|3046324|gb|AAC24483.1| unknown [Azotobacter vinelandii]
          Length = 257

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL + + P NIG   R+        +          S  +A+++ GA + +   ++ + 
Sbjct: 7   VVLVNTSHPGNIGGAARAMRNMGLSRLYLVAPEDFPSSEAVARAS-GATDILDNAQVVAT 65

Query: 195 LTDAL--------QKMHSWGFQTIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L +AL                    L     +   LEQ  +  ++AL+ G E  GL  + 
Sbjct: 66  LEEALVGCTLALGTSARDRRIPWPLLDPRECAATCLEQVGQGAEVALVFGREYAGLTNEE 125

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +      H+       +LN++ A  V +Y  +
Sbjct: 126 LQRCQFHVHIPSDPSFSSLNLAAAVQVLVYEVR 158


>gi|242279118|ref|YP_002991247.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM
           2638]
 gi|242122012|gb|ACS79708.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio salexigens DSM
           2638]
          Length = 161

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            +   +VL     P N G I R          +            L ++       +   
Sbjct: 7   TNPFSIVLFEPEIPPNTGNIARLCAGTDTQLHLIEPLGFSISDKHLKRAGLDYWPKVKLS 66

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              N  +  +       + +  S+     L +        L+LG E +GL     +    
Sbjct: 67  VWKNWQEYKENAKPQ--RLVTTSAKRGTHLFEFKFLPGDHLVLGPETRGLPEWMFDEFKH 124

Query: 251 MAHLHMPGIIKALNVSNAAAVALYIT 276
             ++     +++LN+S +A + LY  
Sbjct: 125 AVNIPTTDNVRSLNLSTSAGIILYQA 150


>gi|315924294|ref|ZP_07920517.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622365|gb|EFV02323.1| TrmH family RNA methyltransferase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 155

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 7/150 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+         +            + ++     + +      + 
Sbjct: 4   IVLFEPEIPQNTGNIARTCALTETKLHLIEPLGFSIGDKAVKRAGLDYWDMVDVTAYLDF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT-QETATSMAHL 254
              L++  +   +   L++   +     +  +   ++ G E  GL              +
Sbjct: 64  ETFLEE--NNDPELYLLTTHGNQNYADIVFKNDDYIMFGRETAGLPKAIHARYPNKRFRI 121

Query: 255 HMPGI--IKALNVSNAAAVALYI--TQNHF 280
            M      ++LN++N+  + LY    QN F
Sbjct: 122 PMKNHPHARSLNLANSVNIVLYEALRQNQF 151


>gi|296135475|ref|YP_003642717.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
           K12]
 gi|295795597|gb|ADG30387.1| RNA methyltransferase, TrmH family, group 1 [Thiomonas intermedia
           K12]
          Length = 260

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 64/181 (35%), Gaps = 30/181 (16%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSES 173
           A   AP L  T         + VL   + P N+GA  R+        + +   R++   +
Sbjct: 11  AAACAPSLDDT---------VFVLVGTSHPGNVGAAARALKNMGFANLRLVAPRFADVLT 61

Query: 174 -AVLAKSASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLS---------SDSKKPLEQ 222
                  ASGA + +   ++   L DA+      G   + LS           + + L Q
Sbjct: 62  QPETLAFASGAEDVLKTAQVHGELGDAVA---DCGV-VVALSARVRDFGPPLHTPEWLPQ 117

Query: 223 -----EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  +  ++A + G+E  GL         ++  +       +LN++ A  V  +  +
Sbjct: 118 LAQRSAEQGRRVAFVFGSERFGLSNADVYRCDALLSIPANPAYTSLNLAQAVQVIAWEWR 177

Query: 278 N 278
            
Sbjct: 178 K 178


>gi|145640854|ref|ZP_01796436.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|145274368|gb|EDK14232.1| rRNA methylase [Haemophilus influenzae 22.4-21]
          Length = 160

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 8/150 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPKTQETA--TSM 251
              L+       +   L++       Q     K+   L+ G E +G+             
Sbjct: 64  EAFLESEKPK--RLFALTTKGSPAHSQVKF--KLGDYLMFGPETRGIPMSILNEMPMKQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    +++N+SN+ AV +Y       
Sbjct: 120 IRIPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|319404223|emb|CBI77816.1| RNA methyltransferase [Bartonella rochalimae ATCC BAA-1498]
          Length = 273

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           ++VL       NIG + R+   F    +   K      +     +AS A   I   +   
Sbjct: 16  IIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARATASKADHIINDTLIFD 75

Query: 194 NLTDALQKMH---------SWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243
            L DA+  ++           GF+T+  + ++   L   E    K  ++ G E  GL   
Sbjct: 76  TLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFGRERWGLENN 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               A  +    +     +LN++ A  +  Y 
Sbjct: 136 EISLADEIITFPVNPAFASLNIAQAVLLIAYE 167


>gi|119470949|ref|ZP_01613533.1| putative cold-shock RNA methyltransferase [Alteromonadales
           bacterium TW-7]
 gi|119445971|gb|EAW27251.1| putative cold-shock RNA methyltransferase [Alteromonadales
           bacterium TW-7]
          Length = 172

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+A  +    +  T     +       +    +E IP       TD+L+K+ 
Sbjct: 16  PTNVGGVLRAAGCYDAKQVYFTGNRYLNAQKFHTDT-KNVVERIPLTS----TDSLEKVK 70

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G   + +   +   PL +    +    +LG E   +     +    + ++   G +  
Sbjct: 71  PEGATVVVVELIEGATPLPEFKHPENAFYVLGPEDGSVPKDVLKWCDEVVYIPTIGCM-- 128

Query: 263 LNVSNAAAVALYIT 276
            N++    V LY  
Sbjct: 129 -NLAATCNVVLYDR 141


>gi|77362425|ref|YP_341999.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877336|emb|CAI89553.1| putative cold-shock RNA methyltransferase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 170

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G +LR+A  +    +  T     +       +    +E I      N    L+K+ 
Sbjct: 16  PTNVGGVLRAAGCYDAQQVFFTGNRYLNAQKFHTDT-KNVVERISLTATDN----LEKVK 70

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
             G   + +   +   PL +    +    + G E   +     + A  + ++   G +  
Sbjct: 71  PQGATVVVIELIEGATPLPEFTHPENAFYVFGPEDGSVSKDVLKWADEVVYIPTIGCM-- 128

Query: 263 LNVSNAAAVALYITQNHFAK 282
            N++    V LY   +  AK
Sbjct: 129 -NLAATCNVVLY---DRLAK 144


>gi|91205992|ref|YP_538347.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157826644|ref|YP_001495708.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
 gi|91069536|gb|ABE05258.1| tRNA/rRNA methyltransferase [Rickettsia bellii RML369-C]
 gi|157801948|gb|ABV78671.1| tRNA/rRNA methyltransferase [Rickettsia bellii OSU 85-389]
          Length = 231

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 16/156 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L       NIGA  R+   F  D +          +     +A GA+  I   +I N
Sbjct: 4   IIILVAPQMGENIGATARAMKNFGLDELRIITPRDGWPNEQARSNAVGAVNIIDNAKIYN 63

Query: 195 -LTDALQKMHSWGFQTIGLS----SDSKKPLEQEIKND------KIALILGAEGKGLRPK 243
            L + ++ +          +    + +K  +  +          K+ ++ G E  GL  +
Sbjct: 64  SLEECIKDLE----YLYATTCIKRAINKDYVFSQNLTSDYPSLAKVGIMFGRENNGLSNE 119

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               A  +  ++      +LN++ A  +  Y    +
Sbjct: 120 EISLANKIITINTT-EFSSLNIAQAVIIVCYELFRN 154


>gi|145299545|ref|YP_001142386.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852317|gb|ABO90638.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 240

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +++   N+G+  R+        ++     +  + +     A+GA + +   R+ + 
Sbjct: 7   IVLVNISHTGNMGSAARAMKTMGLTRLVLVDPQTLPDDS-AHALAAGASDVLANARVVST 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRP 242
            D  + +   G   IG S+ S+      +                 +AL+ G E  GL  
Sbjct: 66  LD--EAIADCGL-VIGTSARSRTLSWPMLDPREAGEKAVGEGMKHPVALVFGRERTGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A     Y  +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQTICYEVR 157


>gi|148826591|ref|YP_001291344.1| putative RNA methyltransferase [Haemophilus influenzae PittEE]
 gi|148716751|gb|ABQ98961.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittEE]
          Length = 160

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++       Q        L+ G E +G+               
Sbjct: 64  EAFLESEKPK--RLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPLEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|145634823|ref|ZP_01790531.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittAA]
 gi|145267989|gb|EDK07985.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittAA]
          Length = 160

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++       Q        L+ G E +G+               
Sbjct: 64  EAFLESEKPK--RLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|145632119|ref|ZP_01787854.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 3655]
 gi|148827956|ref|YP_001292709.1| putative RNA methyltransferase [Haemophilus influenzae PittGG]
 gi|144987026|gb|EDJ93556.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 3655]
 gi|148719198|gb|ABR00326.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittGG]
          Length = 160

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++       Q        L+ G E +G+               
Sbjct: 64  EAFLESEKPK--RLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPLEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|68249362|ref|YP_248474.1| putative RNA methyltransferase [Haemophilus influenzae 86-028NP]
 gi|145638435|ref|ZP_01794045.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittII]
 gi|319897735|ref|YP_004135932.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|329122776|ref|ZP_08251348.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
 gi|68057561|gb|AAX87814.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 86-028NP]
 gi|145272764|gb|EDK12671.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae PittII]
 gi|309751573|gb|ADO81557.1| Putative RNA methylase [Haemophilus influenzae R2866]
 gi|309973738|gb|ADO96939.1| Putative RNA methylase [Haemophilus influenzae R2846]
 gi|317433241|emb|CBY81616.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|327472040|gb|EGF17478.1| RNA methyltransferase [Haemophilus aegyptius ATCC 11116]
          Length = 160

 Score = 53.1 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++       Q        L+ G E +G+               
Sbjct: 64  EAFLESEKPK--RLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|67906560|gb|AAY82666.1| predicted RNA methyltransferase [uncultured bacterium MedeBAC49C08]
          Length = 239

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 23/148 (15%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           VL   + P NIGA  R+  +       ++  K +  +ES   AKS    L+        N
Sbjct: 10  VLVETSHPGNIGACARAMNSMGICNLSLVNPKEFPSTESETRAKSGKKVLDQANI--HDN 67

Query: 195 LTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGL 240
           L +A+   +      IG S+                K   E   + +K++++ G E  GL
Sbjct: 68  LNEAINTSN----LVIGTSARSRSMPWPMMEINNLGKIINESLARKEKVSIVFGNEAVGL 123

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNA 268
             +          +       +LN+S+A
Sbjct: 124 DNEDLGKCDFHLQIPTSED-SSLNLSHA 150


>gi|34580886|ref|ZP_00142366.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
 gi|28262271|gb|EAA25775.1| tRNA/rRNA methyltransferase [Rickettsia sibirica 246]
          Length = 168

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 16/145 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHS 204
           NIGA  R+   F  + +          +     +A GA+  I + +I  +L D+++ +  
Sbjct: 15  NIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIFDSLEDSIKDLE- 73

Query: 205 WGFQTIGLS----SDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQETATSMAHL 254
                   +    + +K  +  +        ++K+ ++ G E  GL  +    AT +  +
Sbjct: 74  ---YLYATTCIKRAMNKDYVFSQNLPLDYPNSEKVGIMFGRENNGLSNEEIAFATKIITI 130

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
           +      +LN++ A  +  Y    +
Sbjct: 131 NTT-EFSSLNIAQAVIIICYELLRN 154


>gi|325293270|ref|YP_004279134.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325061123|gb|ADY64814.1| tRNA/rRNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 280

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 20/163 (12%)

Query: 125 TLDAVRNSQLLMVLDHVNDPH---NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            L+ V     +++++    P    NIG + R+   F    +   K      +     +AS
Sbjct: 7   ELELVAEGPAIILVE----PQLGENIGMVARAMANFGLAELRLVKPRDGWPNEKARAAAS 62

Query: 182 GALEHIPYIRI-SNLTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIK-NDKIA 230
            A   I   ++   L +A++ ++          +GF+ +     +   L  + K  ++  
Sbjct: 63  KADHVIDGTKVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAAGTLRAKFKAGERTG 122

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++ G E  GL  +    A  +    +     +LN++ A  V L
Sbjct: 123 ILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|290477269|ref|YP_003470190.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289176623|emb|CBJ83432.1| putative tRNA/rRNA methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 167

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 26/164 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++    L++  +  I   
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIQPLGFTWDDKRLRRA---GLDYHEFANIKQH 60

Query: 196 TDALQKMHSWGF----------------QTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            D    + S G                  T G  + S    +         L+ G E +G
Sbjct: 61  HDFHAFLVSEGLSPVNSQSPSGARLFALTTKGTPAHSNVSYQDGDY-----LMFGPETRG 115

Query: 240 LRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           L     +         + M    +++N+SN+ AV ++       
Sbjct: 116 LPAYVLDNMPTEQKIRIPMLSDSRSMNLSNSVAVVVFEAWRQLG 159


>gi|301061729|ref|ZP_07202470.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
           NaphS2]
 gi|300444189|gb|EFK08213.1| RNA methyltransferase, TrmH family, group 1 [delta proteobacterium
           NaphS2]
          Length = 253

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 23/157 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKSASGALEHIPYIRI 192
           +VL     P NIG++ R+        +I        +   +     +++  LE +   R 
Sbjct: 12  VVLVQPQIPENIGSVARAMHNMGLSRLIVVDPKNCDADRMNKTATGTSTKVLEDMDISR- 70

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKK---------PLEQEI----KNDKIALILGAEGKG 239
            NL +AL          +G ++ +            L Q++    + + +A++ G E +G
Sbjct: 71  -NLREALVPFQ----YLVGTTARNGTLRPALTQPRTLAQKLIPISQGNSVAILFGPEDRG 125

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L         ++  +       +LN++ A  +  Y  
Sbjct: 126 LSNDQLRFCHTILTVPTA-SFSSLNLAQAVVIVCYEL 161


>gi|227893169|ref|ZP_04010974.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM
           16047]
 gi|227865035|gb|EEJ72456.1| SpoU family RNA methyltransferase [Lactobacillus ultunensis DSM
           16047]
          Length = 186

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +      +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRMHDDL 64

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L+ +  +   +     SS +   ++          + G E  GL     +E      
Sbjct: 65  DAFLKTLGPNDEMYLISKFSSKNYAEVDYTDPKKNYYFVFGKETTGLPETFMREYYDRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+  N+SN+ A+ L      
Sbjct: 125 RIPMSNNIRCYNLSNSVAMVLLEALRQ 151


>gi|294624425|ref|ZP_06703114.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601274|gb|EFF45322.1| tRNA/rRNA methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 254

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL     P NIGA  R+         ++     +        + ++GA      +  + +
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGVSRLVLVAPERA--LDEDAYRRSAGAE---DVLSQAPI 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK------------NDK--IALILGAEGKGLR 241
              L +  +     IG ++ +++   +E+              +   +A + G E  GL 
Sbjct: 65  FATLGEAVADCTLVIGCTARARRVALEELLPAEGAQRALAKAGEPAEVAFVFGRERTGLT 124

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +   +  H+       +LN++ A  V  Y  +
Sbjct: 125 NDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 160


>gi|313471802|sp|C7BSD3|TRML_PHOAA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
          Length = 162

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 15/156 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     +  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHDY 63

Query: 196 TDALQ--------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L+            +   T G  + S    +         L+ G E +GL     + 
Sbjct: 64  HSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDY-----LMFGPETRGLPSYVLDN 118

Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   + M    +++N+SN+ AV ++       
Sbjct: 119 MPPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQLG 154


>gi|253991816|ref|YP_003043172.1| tRNA /rRNA methyltransferase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783266|emb|CAQ86431.1| hypothetical tRNA/rRNA methyltransferase [Photorhabdus asymbiotica]
          Length = 170

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 15/156 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     +  + 
Sbjct: 12  IVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHDY 71

Query: 196 TDALQ--------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L+            +   T G  + S    +         L+ G E +GL     + 
Sbjct: 72  HSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDY-----LMFGPETRGLPSYVLDN 126

Query: 248 A--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
                   + M    +++N+SN+ AV ++       
Sbjct: 127 MPPQQKIRIPMLADSRSMNLSNSVAVVVFEAWRQLG 162


>gi|317970456|ref|ZP_07971846.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CB0205]
          Length = 239

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 21/163 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR- 191
            L +VL     P N+G++ R    FS D +                 A      +   + 
Sbjct: 2   SLAVVLVEPAGPLNVGSVARLCANFSVDELRLVAPRCDHLGNEARLMAVHGEALLEQAQL 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSS---DSKKPL-------------EQEIKNDKIALILGA 235
              L  AL        + +  S    +   PL             E +  +   AL+ G 
Sbjct: 62  FPTLEAALADCR----RVVATSGRIEEEALPLNGPAEALSWLQASETDAPSAPAALVFGR 117

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E +GL       A  +  L       ++N+S+A AV L+  + 
Sbjct: 118 EDRGLSNAELLQAGRILRLETSEAYASMNLSHAVAVCLHELRR 160


>gi|294791453|ref|ZP_06756610.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304]
 gi|294457924|gb|EFG26278.1| SpoU rRNA methylase family protein [Scardovia inopinata F0304]
          Length = 228

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +        +   L ++     +    +   N T+ ++ M 
Sbjct: 84  PGNTGSAIRLCAITGTILHLVEPLGFNLKDTKLRRAGLDYHDMTHVVIHPNFTNLVESMP 143

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRPKT-QETATSM---AHLHMPG 258
               + I  ++ ++    +        L+ G E G  +       +   +       M  
Sbjct: 144 DS--RIISFTAQARTLYTEVDYQPNDILLFGPEPGN-IPDPMDIMSGDHIYKQVRFPMRP 200

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N AA+ALY       
Sbjct: 201 SLRSLNLANCAAIALYEAWRQMG 223


>gi|212703150|ref|ZP_03311278.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
 gi|212673416|gb|EEB33899.1| hypothetical protein DESPIG_01190 [Desulfovibrio piger ATCC 29098]
          Length = 253

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 11/153 (7%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKS--ASGALEHIPYI 190
           L +VL     P NIG   R+ V      I +        E A    +    G L+ +  +
Sbjct: 6   LQVVLVQTRFPENIGMAARACVNMGSRSIRLVAPERWDREKARPLATPKGQGVLDDVQVL 65

Query: 191 RISNLTDALQKM------HSWGFQTIGLSSD-SKKPLEQEI-KNDKIALILGAEGKGLRP 242
              +   A   +       + G++   LS + +   + Q + + +K+A++ G E +GL  
Sbjct: 66  PDVSAAVADCSLVIGTTARTGGWRRSLLSPEQAAGEVAQALERGEKVAIVFGPEDRGLDN 125

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              +    +  +       +LN++ +  + LY 
Sbjct: 126 DAIQHCQRLVTIPTNPEASSLNLAQSVLLLLYE 158


>gi|157413526|ref|YP_001484392.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9215]
 gi|157388101|gb|ABV50806.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 250

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYI 190
           S L ++L   N P N+G++ R    F  D +          S    K A  G        
Sbjct: 8   SNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKMALKGQKFLKNCK 67

Query: 191 RISNLTDALQK----MHSWG---FQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGL 240
              +L  A+      + S G    +   L   S+   +  +   KI   A+I G E +GL
Sbjct: 68  VFDDLQKAIFDCDLVLASCGRIDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGREDRGL 127

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  A    ++       +LN+S+A ++ LY  
Sbjct: 128 TNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYEL 163


>gi|119026340|ref|YP_910185.1| RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765924|dbj|BAF40103.1| probable RNA methyltransferase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 169

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  D ++ M 
Sbjct: 25  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFEDLVESMP 84

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
               + I  ++ + K            L+ G E G          G  P   E       
Sbjct: 85  DS--RIIAFTAHATKLYTDIEYRPTDILLFGPEPGNIPDPMDIMAG--PHVAEQ----VR 136

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 137 LPMRPSLRSLNLTNCASIAIYEAWRQLN 164


>gi|329113815|ref|ZP_08242586.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
 gi|326696825|gb|EGE48495.1| Putative tRNA/rRNA methyltransferase [Acetobacter pomorum DM001]
          Length = 256

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 12/163 (7%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L+ + N+  +++L       NIG   R+        +               +++SGA
Sbjct: 8   APLEPIGNTP-VVILVRPQMAENIGTTARAMANGGLFHLRLVSPRDGWPQERAWRASSGA 66

Query: 184 LEHIPYIRIS-NLTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALI 232
              +    +  ++ DA+  +H             + +  +      L        K+ L+
Sbjct: 67  DRILEAATVHESVDDAVADLHHVYATCPRPRHIIKPVLTARGGAAELRAATGRGLKVGLM 126

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            G E  GL  +    A ++    +     +LN++ A  +  Y 
Sbjct: 127 FGPERAGLDNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYE 169


>gi|294650616|ref|ZP_06727971.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823499|gb|EFF82347.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 278

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 24/159 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + I +I  +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPKTYP-HPDIDALAAGAQDLIEHIDIVET 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGKGL 240
           L  A+Q  H       G S+ S+                L    +   IA++ G E +GL
Sbjct: 77  LEQAIQDCH----LVFGTSARSRTIPWPLLDVRPAAKEALHAASQQQNIAIVFGREDRGL 132

Query: 241 RPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQ 277
             +    A     + +     +  LNV+ A  V  Y  +
Sbjct: 133 TNEELALANYNLTIPVNPEYGV--LNVAQAIQVVCYELR 169


>gi|146283375|ref|YP_001173528.1| methyltransferase [Pseudomonas stutzeri A1501]
 gi|145571580|gb|ABP80686.1| probable methyltransferase [Pseudomonas stutzeri A1501]
 gi|327481767|gb|AEA85077.1| methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 278

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 24/159 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + +   NIG   R+        ++            +A+++ GA + +      + 
Sbjct: 28  VVLVNTSHAGNIGGAARAMKNMGLSRLVLVDPEDFPSPDAVARAS-GATDIL------DS 80

Query: 196 TDALQKMHSWGF---QTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGK 238
              +  +          +G S+               +   +EQ      +AL+ G E  
Sbjct: 81  AQVVATLEEALVGCSLVLGTSARDRRIPWPLLDPRECAAVSVEQAAAGSDVALVFGREYA 140

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +  +      H+       +LN++ A  V  Y  +
Sbjct: 141 GLTNEELQRCQYHVHIPSDPQFSSLNLAAAVQVLTYEVR 179


>gi|219683043|ref|YP_002469426.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620693|gb|ACL28850.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 169

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  D ++ M 
Sbjct: 25  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFEDLVESMP 84

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
           +   + I  ++ + K   +        L+ G E G          G  P   E       
Sbjct: 85  NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGNIPDPMDIMAG--PHVAEQ----VR 136

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 137 LPMRPSLRSLNLTNCASIAIYEAWRQLG 164


>gi|183602131|ref|ZP_02963499.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191363|ref|YP_002968757.1| hypothetical protein Balac_1346 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196769|ref|YP_002970324.1| hypothetical protein Balat_1346 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218624|gb|EDT89267.1| probable RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249755|gb|ACS46695.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251323|gb|ACS48262.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289177489|gb|ADC84735.1| 23S rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295794356|gb|ADG33891.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 223

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 49/148 (33%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  D ++ M 
Sbjct: 79  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFEDLVESMP 138

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
           +   + I  ++ + K   +        L+ G E G          G  P   E       
Sbjct: 139 NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGNIPDPMDIMAG--PHVAEQ----VR 190

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 191 LPMRPSLRSLNLTNCASIAIYEAWRQLG 218


>gi|119945066|ref|YP_942746.1| RNA methyltransferase [Psychromonas ingrahamii 37]
 gi|119863670|gb|ABM03147.1| RNA methyltransferase, TrmH family, group 1 [Psychromonas
           ingrahamii 37]
          Length = 254

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 23/149 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS---ASGALEHIPYIRI 192
           ++L   + P N+G+  R+        ++        E  +  KS   ++GA + +   ++
Sbjct: 7   IILIGTSHPGNVGSAARAMKTMGLTKLVL----VTPECEIDGKSIALSAGASDVLKNHKV 62

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKG 239
            N  D    +   G   IG S+ S+      +                 +AL+ G E  G
Sbjct: 63  CNTLD--DAIADCGL-VIGASARSRTLDWPMLDPREMGQKVVEEGNKHPVALVFGRENSG 119

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L     +       +       +LN++ A
Sbjct: 120 LTNDELQKCHFHVFIPANPDYSSLNLAMA 148


>gi|239994266|ref|ZP_04714790.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas macleodii ATCC 27126]
          Length = 254

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 57/158 (36%), Gaps = 23/158 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L + +   NIG+  R+        +          +    ++++ A      +  + +
Sbjct: 7   IILVNTSHTGNIGSTARAMKTMGLSSLYL----VDPVNEPDGQASALAAGAGDVLANAKI 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
              L++ +   G   +G S+ S+                 QE++   +AL+ G E  GL 
Sbjct: 63  VSTLEEAVKDCGL-VVGTSARSRTHSWPMLGPRDCGEKLVQEVEKYPVALVFGRENSGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
            +  +       +       +LN+  AAAV    Y  +
Sbjct: 122 NEELQQCHFHMCIPANPEYSSLNL--AAAVQTLCYEIR 157


>gi|260555311|ref|ZP_05827532.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
 gi|260411853|gb|EEX05150.1| RNA methyltransferase [Acinetobacter baumannii ATCC 19606]
          Length = 279

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 32/163 (19%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--ESAVLAKSASGALEHIP-YIRI 192
           +V+ +   P NIG+ LR+        ++     SP       +   A+GA + +     +
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVL---VSPKMYPHPDIQALAAGAQDLLEQVEIV 74

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGK 238
             L +A++  H       G S+ S+                ++   +  +IA++ G E +
Sbjct: 75  ETLEEAIKDCH----LVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDR 130

Query: 239 GLRPKTQETATSMAHLHMPGIIKA----LNVSNAAAVALYITQ 277
           GL  +    A     +     + +    LNV+ A  V  Y  +
Sbjct: 131 GLTNEELALANYHLTIP----VNSDYGVLNVAQAIQVVCYELR 169


>gi|255083500|ref|XP_002504736.1| predicted protein [Micromonas sp. RCC299]
 gi|226520004|gb|ACO65994.1| predicted protein [Micromonas sp. RCC299]
          Length = 369

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             K+AL+ G E  GL  +      +   +    +I++L+VS+AA + L     H A
Sbjct: 282 RGKLALVFGREVDGLTDEEVNLCDAACRIPTGRLIESLSVSHAAVIILSQYYQHRA 337



 Score = 35.8 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            + +V+       NIGAI R+A +F C+ +          S     SA GA   +
Sbjct: 82  DVCVVVVGSKKAGNIGAIARAAASFECEDLRLVAPRVDPTSRSSLSSAKGAQHVV 136


>gi|303286179|ref|XP_003062379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455896|gb|EEH53198.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 464

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 54/201 (26%), Gaps = 56/201 (27%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSE------------SAVLAKS 179
           +VL     P NIG I R    F    +          +P               A    +
Sbjct: 94  VVLCRPQGPQNIGGIARVLNNFGIADLRIVTPEPSALAPPYDAADATTDKATHPAETRAT 153

Query: 180 ASGALEHIPYIRISNL--------TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN----- 226
           A  A E   +   ++          DA + +    F     ++ +++ L           
Sbjct: 154 APLAEEAHKFAVHADWLLRDARRCVDAAEALSDCVF-VAATTARARENLPILDARSAVER 212

Query: 227 -------DKIALILGAEGKGLRPKTQETATSMAHLHM-----------------PGII-- 260
                   K+A++ G E  GL  +    A     +                    G    
Sbjct: 213 VKVAASEGKVAIVFGNEATGLTNEELSLANVGVMIPTAGRAGAGAGGRRGEKRYTGGAGP 272

Query: 261 KALNVSNAAAVALYITQNHFA 281
            +LN+S+A  V  Y       
Sbjct: 273 TSLNLSHAVGVVAYELFRELG 293


>gi|119505400|ref|ZP_01627474.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2080]
 gi|119458855|gb|EAW39956.1| RNA methyltransferase, TrmH family, group 1 [marine gamma
           proteobacterium HTCC2080]
          Length = 247

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 60/161 (37%), Gaps = 19/161 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H + P NIG + R+        +   K  +      L ++AS A + +    +   
Sbjct: 8   VVLVHTSHPGNIGGVARAMKNMGLTRLTLVKPKAFPAPEALWRAAS-AEDVLANATVVET 66

Query: 196 TDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGLR 241
            +  + +    F  +G S+                ++      + +++ ++ G E +GL 
Sbjct: 67  VE--EAVQGAQF-IVGTSARERRIPWPLQDAHHCGERLYRHAAQGEEVVILFGREDRGLL 123

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFA 281
            +  E      H+       +LN++ A  +  Y  + +  A
Sbjct: 124 NEELELCNLHCHIPTHESYPSLNLAMAVQIVAYEIRMSQLA 164


>gi|300721214|ref|YP_003710484.1| putative tRNA /rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627701|emb|CBJ88227.1| putative tRNA/rRNA methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 167

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R      C   +        +   L ++     E     +  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGCQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHDY 63

Query: 196 TDALQK--MHS------WGFQTIGLS-----SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L+   + S       G +   L+     + S              L+ G E +GL  
Sbjct: 64  NAFLESEGLSSVNSQSHSGARLFALTTKGTPAHSNVSYRDGDY-----LMFGPETRGLPS 118

Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +         + M    +++N+SN  AV ++       
Sbjct: 119 YVLDNMPPEQKIRIPMLSDSRSMNLSNTVAVVVFEAWRQLG 159


>gi|256851486|ref|ZP_05556875.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260660907|ref|ZP_05861822.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|282933486|ref|ZP_06338862.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297206301|ref|ZP_06923696.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256616548|gb|EEU21736.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548629|gb|EEX24604.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|281302417|gb|EFA94643.1| rRNA methylase [Lactobacillus jensenii 208-1]
 gi|297149427|gb|EFH29725.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 185

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM- 202
           P N G I R+         +        ++  + ++     + +   +  +L   L  + 
Sbjct: 13  PANTGNIARTCAGTETVLDLIEPLGFQLDNKKMKRAGLDYWDKVEIHKHDDLKAFLDTLG 72

Query: 203 -HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGII 260
            +   +     SS S   ++    N     + G E  GL     +E       + M   I
Sbjct: 73  PNDEMYLISKFSSKSYTDVDYTDNNKNYYFVFGKETTGLPETFMREYYDRNLRIPMSDHI 132

Query: 261 KALNVSNAAAVALYITQNH 279
           +A N+SN+AA+ +      
Sbjct: 133 RAYNLSNSAAMVIMEALRQ 151


>gi|87121417|ref|ZP_01077306.1| 23S rRNA methyltransferase [Marinomonas sp. MED121]
 gi|86163260|gb|EAQ64536.1| 23S rRNA methyltransferase [Marinomonas sp. MED121]
          Length = 175

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 18/154 (11%)

Query: 137 VLDHVNDP---HNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKSASGALEHIPYI 190
           V   + +P    N+G+++R+A  +  D ++ T R    +   +    K        IP  
Sbjct: 6   VCIGLTNPKSTSNVGSVMRAAGCYEVDQVLYTGRRYDRAAKLTTDTKKVR----IDIPLN 61

Query: 191 RISNL-TDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
            +  L  + L +      + + +       PL +    +K   I G E   +     + A
Sbjct: 62  NVEALGVNCLTQAIDADTKIVCVDLVKGATPLPEFKHPEKAIYIFGPEDNTISQAVIDKA 121

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
             +  +   G +   N++ +  V LY   +  AK
Sbjct: 122 DHVVFVPTVGCM---NLAASVNVLLY---DRLAK 149


>gi|116492956|ref|YP_804691.1| rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC 25745]
 gi|116103106|gb|ABJ68249.1| Predicted rRNA methylase (SpoU class) [Pediococcus pentosaceus ATCC
           25745]
          Length = 172

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 6/142 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM- 202
           P N G I R+    +    +            + ++     + +  +   NL + L  + 
Sbjct: 13  PANTGNIARTCAGTNTVLHLIKPLGFTINDKTVKRAGLDYWDKVEIVYHENLPEFLATVP 72

Query: 203 -HSWGFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHLHMP- 257
                F        + S+     E  ++   L+ G E  GL              +    
Sbjct: 73  DKKRLFVVSKFAKRAYSQADYTSENNDEDNYLLFGKETTGLPEAFMRQYEECAIRIPQND 132

Query: 258 GIIKALNVSNAAAVALYITQNH 279
             I+ALN+SN+AA+ +Y     
Sbjct: 133 ENIRALNLSNSAAIVIYEVLRQ 154


>gi|293391513|ref|ZP_06635847.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952047|gb|EFE02166.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 158

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 47/152 (30%), Gaps = 12/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     +    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKKLRRSGLDYHEFAEIKKHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL----ILGAEGKGLRPKTQETA--T 249
              LQ       +   L++       +     K AL    + G E +G+      T    
Sbjct: 64  EAFLQS--EQPKRLFALTTKGTPAHSEV----KFALGDYLMFGPETRGIPMSILNTMPPE 117

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M    +++N+SN+ AV +Y       
Sbjct: 118 QKIRIPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|294155367|ref|YP_003559751.1| rRNA methylase [Mycoplasma crocodyli MP145]
 gi|291600056|gb|ADE19552.1| rRNA methylase [Mycoplasma crocodyli MP145]
          Length = 174

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHS 204
           N G I+R+  A      I            L +  +G +   I +   ++  D   K  +
Sbjct: 14  NTGNIIRTCFALGAKLHIIKPTSFDLHPKYLRRYGAGRILSDIQHEIHASYDDFENKYKN 73

Query: 205 WG---FQTIGLSSDSKKPLEQE-IKNDKIALILGAEGKGLRPKTQ-ETATSMAHLHMPGI 259
                    GL + +++  ++   ++ ++ L+ G E  G+      +   +   + M   
Sbjct: 74  KNIFYITRYGLKTYTEQNFKKAYDQSGEVWLMFGRESTGIDKNILHKNINNCLRIPMVSE 133

Query: 260 IKALNVSNAAAVAL--YITQNHF 280
           ++++N++N   V +  +      
Sbjct: 134 MRSINLANC--VCIVGFEVMRQL 154


>gi|284165121|ref|YP_003403400.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
           turkmenica DSM 5511]
 gi|284014776|gb|ADB60727.1| RNA methyltransferase, TrmH family, group 1 [Haloterrigena
           turkmenica DSM 5511]
          Length = 255

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 25/167 (14%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-P 188
           R    + V+D    P N+G I R+   F  + ++                A  A E + P
Sbjct: 14  RTPPAVAVVDA-QFPGNVGTIARAMKNFGFEDLLLVDPPELDPDGEAYGFAGHAREDVLP 72

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------KIALILGAE 236
                +    + + H+ G   +  + D +  +                     AL+ G E
Sbjct: 73  NATEISFDRLVTEYHTIGCTAV-TNEDDRSHVRFPFSTPADLAERLPTVEAPTALVFGRE 131

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKA-----LNVSNAAAVALYITQN 278
             GL  +       +  +       +     LN+  AA + LY  ++
Sbjct: 132 RVGLTNEELARIDEICSIP-----ASDEYPVLNLGQAATITLYELRS 173


>gi|95929632|ref|ZP_01312374.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
           684]
 gi|95134329|gb|EAT15986.1| RNA methyltransferase TrmH, group 1 [Desulfuromonas acetoxidans DSM
           684]
          Length = 261

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +QL +VL     P NIG++ R+   F    +      +        + A  A   +    
Sbjct: 12  AQLAIVLVEPQGPLNIGSVCRAMGNFGFSDLRLVNPQTDHLRQEARQMAVKAGYVLESAT 71

Query: 192 I-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---------------IALILGA 235
           I S+L +AL           G +    +  +++                     AL+ G 
Sbjct: 72  IYSSLEEALHGCQYA----FGTTRRFGRYRDRDDFLYPDAAAQMIAGFDHDTHTALVFGR 127

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E  GL  +  +       +     + ++N++ + ++ LY     
Sbjct: 128 EDCGLLNEELDLCQRFLTIPTCDAMPSMNLAQSVSLCLYEVSKQ 171


>gi|29654438|ref|NP_820130.1| RNA methyltransferase [Coxiella burnetii RSA 493]
 gi|29541705|gb|AAO90644.1| rRNA methylase, SpoU family [Coxiella burnetii RSA 493]
          Length = 240

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIGA  R+        +   K          A++A           + +L
Sbjct: 7   IVLVNPSHPGNIGAAARAMKTMGFSRLYLVKPELFPHEQATARAAGADAVLASARVVDDL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK------------IALILGAEGKGLRPK 243
           T AL+  +       G S+ S+  L   +K  +            IA++ G E  GL  +
Sbjct: 67  TAALEGCN----LVFGTSARSRT-LPWPLKTPRECAEQSVQHQGNIAIVFGRERSGLTNE 121

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                     +       +LN++ A  +  Y  +
Sbjct: 122 ELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEIR 155


>gi|227877175|ref|ZP_03995249.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256842729|ref|ZP_05548217.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256848961|ref|ZP_05554395.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|262045696|ref|ZP_06018660.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|293380174|ref|ZP_06626256.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           crispatus 214-1]
 gi|295692528|ref|YP_003601138.1| RNA methyltransferase, trmh family, group 2 [Lactobacillus
           crispatus ST1]
 gi|312977747|ref|ZP_07789494.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
 gi|227863229|gb|EEJ70674.1| SpoU family RNA methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614149|gb|EEU19350.1| rRNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256714500|gb|EEU29487.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|260573655|gb|EEX30211.1| rRNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|290923218|gb|EFE00139.1| putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           crispatus 214-1]
 gi|295030634|emb|CBL50113.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           crispatus ST1]
 gi|310895486|gb|EFQ44553.1| RNA methyltransferase, TrmH family [Lactobacillus crispatus CTV-05]
          Length = 186

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +   R  +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDVRRHDDL 64

Query: 196 TDALQKM--HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L+ +  +   +     SS +   ++    N     + G E  GL     +E      
Sbjct: 65  NAFLKTLGPNDEMYLISKFSSKNYAQVDYTDPNKNYYFVFGKETTGLPETFMREYYDRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+  N+SN+ A+ L      
Sbjct: 125 RIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|154488238|ref|ZP_02029355.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis
           L2-32]
 gi|154083389|gb|EDN82434.1| hypothetical protein BIFADO_01812 [Bifidobacterium adolescentis
           L2-32]
          Length = 227

 Score = 52.7 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  D ++ M 
Sbjct: 83  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFEDLVESMP 142

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
               + I  ++ + K            L+ G E G          G  P   E       
Sbjct: 143 DS--RIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPMDIMAG--PHVAEQ----VR 194

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 195 LPMRPSLRSLNLTNCASIAIYEAWRQLN 222


>gi|157964184|ref|YP_001499008.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
 gi|157843960|gb|ABV84461.1| tRNA/rRNA methyltransferase [Rickettsia massiliae MTU5]
          Length = 233

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHS 204
           NIGA  R+   F  + +          +     +A GA+  I + +I  +L D+++ +  
Sbjct: 18  NIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIFDSLEDSIKDLE- 76

Query: 205 WGFQTIGLS----SDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQETATSMAHL 254
                   +    + +K  +  +        ++K+ ++ G E  GL  +    A  +  +
Sbjct: 77  ---YLYATTCIKRAMNKDYVFSQNLPLDYPNSEKVGIMFGRENNGLSNEEIAFANKIITI 133

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
           +      +LN++ A  +  Y    +
Sbjct: 134 NTT-KFSSLNIAQAVIIICYELFRN 157


>gi|120598379|ref|YP_962953.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1]
 gi|120558472|gb|ABM24399.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella sp. W3-18-1]
          Length = 262

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 17/173 (9%)

Query: 116 LETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY---SPSE 172
            E +         +  S + + L +   P N+G I+R++  +  +G+  T R    +   
Sbjct: 27  AEMSSAEFACEQTLDTSAVFIGLVNPKTPVNVGGIMRASGCYGVNGVFYTGRRYELAARS 86

Query: 173 SAVLAKS-ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIA 230
            AV        A E IP   +++L  A+        Q I +       PL   +   K  
Sbjct: 87  GAVQYHVDTKDAGERIPLTGVTSLLAAIP----ADTQLICVDLVVGATPLPDFVHPAKAF 142

Query: 231 LILGAEGKG-LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + G E  G +  +  + A ++ ++   G +   N++ +  V LY   +  AK
Sbjct: 143 YVFGPE-DGTIGQEIIDKADAVVYVPTVGCM---NLAASVNVLLY---DRLAK 188


>gi|54307943|ref|YP_128963.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9]
 gi|46912369|emb|CAG19161.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 243

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        ++           + AKS + A      +  + +
Sbjct: 7   VVLIGTSHPGNIGSAARAMKVMGLTNLVL----VDPACEIDAKSLALAAGAADVVTNAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSK--------------KPLEQEIKNDKIALILGAEGKGLR 241
              L +  +     IG S+ S+              K +E+   +  +A++ G E  GL 
Sbjct: 63  VKTLDEAIADCGLVIGSSARSRTLEWPQLDPRESGIKTIEEAAAH-PVAILFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +      ++       +LN++ A
Sbjct: 122 NEELQKCHCHVYIPANPEYSSLNLAMA 148


>gi|156936922|ref|YP_001434718.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
 gi|156565906|gb|ABU81311.1| tRNA/rRNA methyltransferase (SpoU) [Ignicoccus hospitalis KIN4/I]
          Length = 228

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 19/148 (12%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKMHS 204
           N G ILR    F  D I+  +         +   A+   +++     + +  +AL+ +  
Sbjct: 15  NFGFILRLCKNFEVDEIVAVRPKFDVRDEEVLTFAANGRDYVDKVKVVDDYKEALEGL-- 72

Query: 205 WGFQTIGLSSD--SKKPLEQEIKN----------DKIALILGAEGKGLRPKTQETATSMA 252
                +  S+   S  PL   +            +++ L+ G E  GL  +  +   ++ 
Sbjct: 73  ----VVCTSAKVSSADPLRDFVLPWELKEKFGEPERLTLVFGRESVGLTREELKECDALL 128

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNHF 280
           H+        +N+S+A AV L+     +
Sbjct: 129 HVPASPQYPVMNLSHAVAVVLWEVWKQY 156


>gi|58336980|ref|YP_193565.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227903539|ref|ZP_04021344.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC
           4796]
 gi|58254297|gb|AAV42534.1| rRNA methylase [Lactobacillus acidophilus NCFM]
 gi|227868426|gb|EEJ75847.1| SpoU family RNA methyltransferase [Lactobacillus acidophilus ATCC
           4796]
          Length = 184

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +   R  +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVKVHRHDDL 64

Query: 196 TDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L+ +      +     SS +   ++          + G E  GL     +E      
Sbjct: 65  NAFLKSLGPDDEMYLISKFSSKNYVDVDYTDSKKNYYFVFGKETTGLPETFMREYYDRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+  N+SN+ A+ L      
Sbjct: 125 RIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|307945605|ref|ZP_07660941.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
           TrichSKD4]
 gi|307771478|gb|EFO30703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Roseibium sp.
           TrichSKD4]
          Length = 293

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 14/166 (8%)

Query: 127 DAVRNSQLL---MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           DA R S ++   ++L       NIG   R+   F    +          S     +AS A
Sbjct: 33  DAARLSDIVPPAVILCEPQLGENIGTAARAMANFGWVDLRIVNPRDGWPSEKARAAASRA 92

Query: 184 LEHIPYIRI-SNLTDALQKM----------HSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
              I  +++  +L  A+  +                       ++K ++  +       I
Sbjct: 93  DHVIDKVQVFDSLEAAIADLTFVFATTARSREVPKPVCSPDEAAQKVVQSGVSGLPTGYI 152

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            G E  GL  +    A  +  L +     +LN++ A  V  Y  + 
Sbjct: 153 FGRERWGLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRK 198


>gi|330993326|ref|ZP_08317261.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329759356|gb|EGG75865.1| Putative tRNA/rRNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 266

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---SESAVLAKSASGALEHIPYIR 191
           +++L       NIG    +A A +  G+   +  +P          +SASGA   +   +
Sbjct: 18  VVILVRPQMAENIGT---TARAMANGGLFHMRIVAPRDGWPQERAWRSASGADRILESAQ 74

Query: 192 ISNLTD-ALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGL 240
           + +  D A+  +H             + +  +      L +      K+ L+ G E  GL
Sbjct: 75  VFDTVDDAVADLHHVFATCPRPRHIVKPVLTARGGAAELREMTGRGLKVGLMFGPERAGL 134

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             +    A ++    +     +LN++ A  +  Y 
Sbjct: 135 DNEDMARADALIRYPLNPAFMSLNLAQAVMIMAYE 169


>gi|171057904|ref|YP_001790253.1| RNA methyltransferase [Leptothrix cholodnii SP-6]
 gi|170775349|gb|ACB33488.1| RNA methyltransferase, TrmH family, group 1 [Leptothrix cholodnii
           SP-6]
          Length = 252

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 20/156 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAV-LAKSASGALEHIPYIR-IS 193
           +L H +   N+GA  R+       D ++   R++   S       ASGA + +   R ++
Sbjct: 11  ILLHTSHAGNVGATARAMKVMGFRDLVLVAPRFADVLSREETVAMASGAADILVRARIVA 70

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL------------EQEIKNDKIALILGAEGKGLR 241
            L +AL+     G      ++ + +                    +++A + G+E  G+ 
Sbjct: 71  TLDEALE-----GIHVACATAMTPRDFGPPTSTPREHLPALAAGGERVAFVFGSERYGMS 125

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +          +       +LN++ A  +  Y  +
Sbjct: 126 NEEVYRCQICLSIPTQPDYGSLNLAQAVQLMAYEWR 161


>gi|88703677|ref|ZP_01101393.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
 gi|88702391|gb|EAQ99494.1| RNA methyltransferase TrmH, group 1 [Congregibacter litoralis KT71]
          Length = 254

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 17/154 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIGA+ R+        ++              ++          + +  L
Sbjct: 8   IVLVEPSHPGNIGAVARAMKTMGLGRLVLVAPEQFPHEEATWRAVWARDVLESAVVVDTL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-------------IALILGAEGKGLRP 242
            +A+ +    GF  +G  +  ++     +   +             +A++ G E  GL  
Sbjct: 68  DEAIAEC---GF-VVGTCARDQRLPWPVLDPRRSALEVSANSRRGEVAILFGREDNGLSN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +          +       +LN++ A  +  Y  
Sbjct: 124 EELMRCNLHLAIPTSDAYSSLNLAMAVQIVCYEL 157


>gi|119478210|ref|ZP_01618266.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143]
 gi|119448719|gb|EAW29963.1| 23S rRNA methyltransferase [marine gamma proteobacterium HTCC2143]
          Length = 157

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 12/146 (8%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +  + +  T +      +    +   + E +P I + +L  
Sbjct: 10  LHNPKSPVNVGSVMRAAGCYGVNSVFYTGKRYDIAKSFYTDTQR-SYETLPLIAVDDLET 68

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-ILGAEGKGLRPKTQETATSMAHLHM 256
            +      G   + +            K+   A  I G E   LR       +   ++  
Sbjct: 69  IIP----LGCVPVAIEMTKDARPLPAYKHPPRAFYIFGPEDGSLRKNIIGYCSDTIYIPT 124

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
            G +   N++ A  V LY   +  AK
Sbjct: 125 TGCM---NLAAAVNVVLY---DRLAK 144


>gi|319898916|ref|YP_004159009.1| RNA methyltransferase [Bartonella clarridgeiae 73]
 gi|319402880|emb|CBI76431.1| RNA methyltransferase [Bartonella clarridgeiae 73]
          Length = 277

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           +++L       NIG + R+   F    +   K      +  +  +AS A   I   +   
Sbjct: 16  IIILVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKVKATASKADHIINDTLIFD 75

Query: 194 NLTDALQKMH---------SWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPK 243
            L DA+  ++           GF+T+  + ++   L   E    K  ++ G E  GL   
Sbjct: 76  TLRDAIADLNYVYATTARERCGFKTVKSAVEAANILRYYENIGHKTGILFGRERWGLENN 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               A  +    +     +LN++ A  V L
Sbjct: 136 EISLADEIITFPVNPAFASLNIAQA--VLL 163


>gi|188991297|ref|YP_001903307.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733057|emb|CAP51255.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 258

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 24/158 (15%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV---LAKSASGALEHIPYIRIS 193
           VL     P NIGA  R+        ++        E A+     + ++GA      +  +
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGLTRLVL----VAPEKALDEDAYRRSAGAE---DVLSDA 62

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKG 239
            + + L +  +     IG ++ +++   +E+  D              ++A++ G E  G
Sbjct: 63  PIFETLAEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTG 122

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L     +   +  H+       +LN+++A  V  Y  +
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMR 160


>gi|270159572|ref|ZP_06188228.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|289165632|ref|YP_003455770.1| methyltransferase [Legionella longbeachae NSW150]
 gi|269987911|gb|EEZ94166.1| TrmH family RNA methyltransferase [Legionella longbeachae D-4968]
 gi|288858805|emb|CBJ12719.1| putative methyltransferase [Legionella longbeachae NSW150]
          Length = 251

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 59/152 (38%), Gaps = 11/152 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-N 194
           ++L   + P NIG+  R+        +   K  S  +     + A+GA + +    ++ +
Sbjct: 8   IILVATSHPGNIGSTARAMKTMGLKSLYLVKPKSFPDLR-AQEMAAGADDLLESAVVTES 66

Query: 195 LTDAL--------QKMHSWGFQTIGLSSDSKKPL-EQEIKNDKIALILGAEGKGLRPKTQ 245
           L +AL              G    GL+  S   L  Q+  N +IA++ G E  GL  +  
Sbjct: 67  LDNALVGCQLILGTSARPRGISLPGLTPSSCADLVNQQADNTEIAIVFGREHAGLTNEEL 126

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                  ++       +LN++ A  +  Y  +
Sbjct: 127 LKCHYHINIPSNPEYSSLNLAQAVQIITYELR 158


>gi|157825295|ref|YP_001493015.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
 gi|157799253|gb|ABV74507.1| tRNA/rRNA methyltransferase [Rickettsia akari str. Hartford]
          Length = 231

 Score = 52.7 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHS 204
           NIGA  R+   F    +          +     +A GA+  I   +I  NL +++Q +  
Sbjct: 15  NIGATARAMKNFGLSELRIVAPRDGWPNEQARSNAVGAVNIIDNAKIYDNLEESVQDLE- 73

Query: 205 WGFQTIGLS----SDSKKPLEQEIK------NDKIALILGAEGKGLRPKTQETATSMAHL 254
                   +    + +K  +  +        ++K+ ++ G E  GL  K    A  +  +
Sbjct: 74  ---YLYATTCIKRAMNKDYVFSQNLPLDYPNSEKVGIMFGRENNGLSNKEVALANKIITI 130

Query: 255 HMPGIIKALNVSNAAAVALYITQNHF 280
           +      +LN++ A  +  Y    +F
Sbjct: 131 NTT-EFSSLNIAQAVIIICYELFRNF 155


>gi|304311799|ref|YP_003811397.1| RNA methyltransferase [gamma proteobacterium HdN1]
 gi|301797532|emb|CBL45752.1| RNA methyltransferase [gamma proteobacterium HdN1]
          Length = 254

 Score = 52.3 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 28/165 (16%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR- 191
           ++ +V+ H  D  N+G+  R+        +         ++A     ASGA + +   R 
Sbjct: 6   RISIVMVHTTDSGNLGSAARAMKTMGIHDLRLVAPEDSPDTAKAIARASGAADLLLAARQ 65

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGK 238
              L +AL           G S+  +               + +E    ++A++ G E  
Sbjct: 66  FDTLEEALADCS----LVFGASARKRTIPWPLITPPVMADLVLKEPVEGRVAVLFGREDN 121

Query: 239 GLRPKTQETATSMAHLHMPGIIKA-----LNVSNAAAVALYITQN 278
           GL  +          +       +     LNVS A  V  Y  + 
Sbjct: 122 GLTNEELSLCHYHVTIPC-----SDEYCVLNVSQAIQVICYQLRQ 161


>gi|325921164|ref|ZP_08183033.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
           ATCC 19865]
 gi|325548358|gb|EGD19343.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas gardneri
           ATCC 19865]
          Length = 255

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 18/155 (11%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHI---PYIRI 192
           VL     P NIGA  R+         ++     +        + ++GA + +   P    
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGISRLVLVAPERA--LDEDAYRRSAGAEDVLGDAPVF-- 65

Query: 193 SNLTDALQKM--------HSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRP 242
           + L +A+            +       L  D+          +   +A++ G E  GL  
Sbjct: 66  ATLGEAVADCTLVIGCTARARRVALEELLPDAGARRALAKAGEPAEVAIVFGRERTGLTN 125

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +   +  H+       +LN++ A  V  Y  +
Sbjct: 126 DELQLCHAAVHIPSDPAFSSLNLAAAVQVLAYEVR 160


>gi|229844634|ref|ZP_04464773.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 6P18H1]
 gi|229812348|gb|EEP48038.1| conserved hypothetical tRNA/rRNA methyltransferase [Haemophilus
           influenzae 6P18H1]
          Length = 160

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 44/148 (29%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++       Q        L+ G E +G+               
Sbjct: 64  EAFLESEKPK--RLFALTTKGSPAHSQVKFELGDYLMFGPETRGIPMSILNEMPMKQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|224436469|ref|ZP_03657483.1| rRNA methylase (SpoU class) [Helicobacter cinaedi CCUG 18818]
 gi|313142980|ref|ZP_07805173.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128011|gb|EFR45628.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 156

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  VA      +        E   L ++     +++      NL
Sbjct: 6   IVLVEPQIPQNTGNIGRLCVATDSILHLIHPLGFSVEQKELKRAGLDYWQNLQVYEWQNL 65

Query: 196 TDALQK--MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
            +  +K  ++   F     S+ +KK   Q   +    L  G E +GL     E+A     
Sbjct: 66  KEFWEKHPINERHFFF---STKAKKLYYQADFSQGGFLYFGREDRGLDSSLAESA-RAYR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   I+++N++ +   ALY       
Sbjct: 122 LPMVKGIRSVNLATSVGAALYEGLRQLG 149


>gi|21231714|ref|NP_637631.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768160|ref|YP_242922.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113416|gb|AAM41555.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573492|gb|AAY48902.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 258

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 24/158 (15%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV---LAKSASGALEHIPYIRIS 193
           VL     P NIGA  R+        ++        E A+     + ++GA      +  +
Sbjct: 10  VLVGTQHPGNIGAAARAMKTMGLTRLVL----VAPEKALDEDAYRRSAGAE---DVLSDA 62

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKG 239
            + + L +  +     IG ++ +++   +E+  D              ++A++ G E  G
Sbjct: 63  PIFETLAEAVADCTLVIGCTARARRVALEELAPDVGAGRAWAKAAEPAEVAIVFGRERTG 122

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L     +   +  H+       +LN+++A  V  Y  +
Sbjct: 123 LTNDELQLCHAAVHIPSDPQFSSLNLASAVQVLAYEMR 160


>gi|300691860|ref|YP_003752855.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
 gi|299078920|emb|CBJ51581.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum PSI07]
          Length = 286

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 21/182 (11%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD---GIITTKRYSPS 171
           A ETAP         R ++   VL   + P N+G+  R+          G +  +   P 
Sbjct: 7   ASETAPARDNDTLRQRAARCRFVLVETSHPGNVGSTARALKTMGFGEPGGYVLVRPREPG 66

Query: 172 E--SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-----------SDSKK 218
                     ASGA + +   R+ +  D  + +          +             +  
Sbjct: 67  AQSHPDAVAMASGADDVLAGARVVD--DFGEALAGASLVIALTARPREFGPRRIGPRAAA 124

Query: 219 PLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +       +A + G E  GL  +  E    + H+       +LN+S A  +  Y 
Sbjct: 125 QEVAALLASPGATVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYE 184

Query: 276 TQ 277
            +
Sbjct: 185 VR 186


>gi|15897647|ref|NP_342252.1| hypothetical protein SSO0747 [Sulfolobus solfataricus P2]
 gi|284174973|ref|ZP_06388942.1| hypothetical protein Ssol98_09996 [Sulfolobus solfataricus 98/2]
 gi|6015729|emb|CAB57556.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813914|gb|AAK41042.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602416|gb|ACX92019.1| tRNA/rRNA methyltransferase (SpoU) [Sulfolobus solfataricus 98/2]
          Length = 237

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 21/154 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL      +NIG + R    F  D +      +    +   + ++G  E +   +I N 
Sbjct: 4   VVLVEPEGEYNIGFVARLCKNFLVDELYIVNPRANI--SEAFRFSAGGREILEKAKIVNT 61

Query: 196 TDALQKMHSWGFQTI--GLSSDSKKPLEQEIK---------NDKIALILGAEGKGLRPKT 244
            D  + ++    +     ++ ++   L + I+           KIALI G E  GL  + 
Sbjct: 62  FD--KAINDVDIKIATSSIADNNGDILRKSIRPWEILPLIQGKKIALIFGRESVGLTREE 119

Query: 245 QETATSMAHLHMPGIIKA---LNVSNAAAVALYI 275
                 + ++       +   LN+S+A  + LY 
Sbjct: 120 IFKCDFLLYIPANP---SYPVLNLSHAVGIVLYE 150


>gi|229818127|ref|ZP_04448409.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM
           20098]
 gi|229784731|gb|EEP20845.1| hypothetical protein BIFANG_03419 [Bifidobacterium angulatum DSM
           20098]
          Length = 213

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  D ++ M 
Sbjct: 69  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFEDLVESMP 128

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
               + I  ++ + K            L+ G E G          G  P   E       
Sbjct: 129 DS--RIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPMDIMAG--PHVAEQ----VR 180

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 181 LPMRPSLRSLNLTNCASIAIYEAWRQMG 208


>gi|292657019|ref|YP_003536916.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
           DS2]
 gi|291371341|gb|ADE03568.1| RNA methyltransferase, TrmH family, group 1 [Haloferax volcanii
           DS2]
          Length = 275

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G I R+   F    +                 A  A E +    + N T+   +  
Sbjct: 41  PGNVGTIARAMKNFGIYDLRLVDPPPLDPDGEAYGFAGHAREDV----LPNATETTLEEV 96

Query: 204 SWGFQTIGLSS----DSKKPLEQEIKND------------KIALILGAEGKGLRPKTQET 247
              F T+G ++    DS + +    K              K AL+ G EG GL  +    
Sbjct: 97  VEEFHTVGTTAVSHEDSTRHVRYPFKTPVEIADSLESVETKTALVFGREGTGLDNEELAM 156

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
              +  +        LN+  AA + +Y  + 
Sbjct: 157 LDEVCCIPADDRYPVLNLGQAATLLMYELRR 187


>gi|115372736|ref|ZP_01460042.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370217|gb|EAU69146.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 218

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L +E    ++AL+LG E +GL          +  +    +  ++N++ AA V LY+    
Sbjct: 76  LAEESARGRVALVLGGEQRGLSDAELAVCADVLVIPTSEVQPSMNLAQAAGVLLYLCGRE 135

Query: 280 FAK 282
            A+
Sbjct: 136 DAQ 138


>gi|56461142|ref|YP_156423.1| rRNA methyltransferase [Idiomarina loihiensis L2TR]
 gi|56180152|gb|AAV82874.1| rRNA methyltransferase, TrmH family [Idiomarina loihiensis L2TR]
          Length = 240

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + +   NIG++ R+        +              + +++ A      +  + +
Sbjct: 7   IVLVNTSHTGNIGSVARAMKTMGLSKLTL----VDPVQEPDSHASALAAGATDILASATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
            D LQ+  +     I  S+ ++  L+  +   +              +AL+ G E  GL 
Sbjct: 63  VDTLQEAIADCGLVIATSARNRT-LDWPLLGPRECAAKVLEETSQHQVALVFGRENSGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  + +    H+       +LN++ A
Sbjct: 122 NEELQQSQFHLHIPTNPDYSSLNLAMA 148


>gi|67459564|ref|YP_247188.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
 gi|67005097|gb|AAY62023.1| tRNA/rRNA methyltransferase [Rickettsia felis URRWXCal2]
          Length = 231

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 57/156 (36%), Gaps = 16/156 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIGA  R+   F  + +          +     +A GA+  I   ++  
Sbjct: 4   VIILVAPQMGENIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDNAKVYD 63

Query: 194 NLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIK------NDKIALILGAEGKGLRPK 243
           +L D ++ +          +    + +K  +  +        + K+ ++ G E  GL  +
Sbjct: 64  SLEDCIKDLE----YLYATTCIKRAMNKDYVFSQNLPLDYPNSAKVGIMFGRENNGLSNE 119

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               A  +  ++      +LN++ A  +  Y    +
Sbjct: 120 EISLANKIITINTT-EFSSLNIAQAVIIICYELFRN 154


>gi|307132079|ref|YP_003884095.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
 gi|306529608|gb|ADM99538.1| tRNA:Cm32/Um32 methyltransferase [Dickeya dadantii 3937]
          Length = 248

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  ++ SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLWLVNPLVKPDSQAISLSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D+L +        +G S+ S+                 QE ++  +AL+ G E  GL  
Sbjct: 63  VDSLDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSVQEAQHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  +  Y  +
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILSYEVR 157


>gi|322831757|ref|YP_004211784.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
 gi|321166958|gb|ADW72657.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
          Length = 245

 Score = 52.3 bits (125), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 18/164 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + +VL   +   N+G+  R+        +         +S  ++ SA  +      I 
Sbjct: 3   PNIRIVLVETSHTGNMGSTARAMKTMGLSSLYLVNPLVKPDSQAISLSAGAS----DVIG 58

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGK 238
            + + D L +  +     IG S+ S+                 +  +   +AL+ G E  
Sbjct: 59  NATIVDTLDEALAGCSLVIGTSARSRTLPWPMLEPRECGEHSAKAAQTAPVALVFGRERV 118

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-NHFA 281
           GL  +  +       +       +LN++ A  +  Y  +  H A
Sbjct: 119 GLTNEELQKCNYHVCIPANPEYSSLNLAMAVQIIAYEVRVAHLA 162


>gi|220904214|ref|YP_002479526.1| tRNA/rRNA methyltransferase SpoU [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868513|gb|ACL48848.1| tRNA/rRNA methyltransferase (SpoU) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 250

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 23/157 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +VL     P NIG   R+ V   C  + +        E A    +  G          ++
Sbjct: 10  IVLVKTRFPENIGMAARACVNMGCSSLSLVDPERWDKEKARPLATPKGQDLLDDVKVYAD 69

Query: 195 LTDALQ--KMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGK 238
           L +A+    +       +G ++      +  +   +              +AL+ G E +
Sbjct: 70  LPEAVAPVTL------VVGTTARVGGWRQSLLSPGRAAADVAEALAHGERVALVFGPEDR 123

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           GL  +       +  +       +LN++ A  + LY 
Sbjct: 124 GLNNEEITHCHKLVTIPTDPAASSLNLAQAVLLLLYE 160


>gi|220918283|ref|YP_002493587.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956137|gb|ACL66521.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 237

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 22/154 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           +VL    +P N+GA+ R+   F  D   I     +  +    +      A+     +   
Sbjct: 7   LVLLRPRNPENLGAVARAMKNFGADDWAIAELGTHDFAAMRRV------AVHAEELLDRP 60

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGKGLR 241
            L   L +  +     +G SS + K               +     + A++ G E  GL 
Sbjct: 61  RLVRTLDEAVADCAWVVGTSSRTVKGKRRLPPAEVAREALERAAAGRTAIVFGDERSGLT 120

Query: 242 PKTQETATSMAHLHMPGIIK-ALNVSNAAAVALY 274
                    ++ +   G  + +LN++ AA V LY
Sbjct: 121 NDEVHRCHDLSAIP-AGEAQPSLNLAQAALVYLY 153


>gi|148546546|ref|YP_001266648.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1]
 gi|148510604|gb|ABQ77464.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida F1]
          Length = 156

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 12/138 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+++R+A  +  + +  T +     +             IP I I +L   +      
Sbjct: 19  NVGSVMRAAGCYGVNSVFYTGKRY-ERARDFVTDTKRVHYDIPLIGIDDLQRIIP----L 73

Query: 206 GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   + +   +  +PL      D+   I G E   L  + +       ++   G +   N
Sbjct: 74  GCTPVAVELVEGARPLPDYTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEGCM---N 130

Query: 265 VSNAAAVALYITQNHFAK 282
           ++    V LY   +  AK
Sbjct: 131 LAATVNVVLY---DRLAK 145


>gi|71028564|ref|XP_763925.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350879|gb|EAN31642.1| hypothetical protein TP04_0290 [Theileria parva]
          Length = 390

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 87/243 (35%), Gaps = 24/243 (9%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           +H     +   +  S + S    + L  +  +     + +    ++  T ++  +L  D 
Sbjct: 86  HHPVVNHLLKLSYSSNYRSYRGLVLLSSLKLIKEYC-SRNGPCNRIYTTSHS-NKLLSDP 143

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPH 145
           ++     V  V  + + K+   ++  +GL  E  P   P+   +   +L++ L       
Sbjct: 144 DVKFD-KVLLVSKKVLQKVGNLKSYDKGLLAEV-PYPKPSP-TLGIPKLVLCLCPSTKKT 200

Query: 146 N------IGAILRSAVAFSCDGII-TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           N      +G ++RSA A     +             +  +S+  +L  IPY R + + + 
Sbjct: 201 NRTTESDLGTLIRSAQALQWQAVWVLQNGNIDLLDPLTIRSSHYSLSTIPYSRGT-IDET 259

Query: 199 LQKMHSWGFQTIGLSSDSKKPLEQEIKNDK------IALILGAEGKGLRPKTQETATSMA 252
           L+              D  K ++ E  + K      I L+ G     L  +    +T ++
Sbjct: 260 LEFAKKNDLLLCHCCKDGIK-VDSETFSQKISSHKGIMLMAGN----LPYELFSKSTKLS 314

Query: 253 HLH 255
            + 
Sbjct: 315 VIP 317


>gi|316983221|pdb|3L8U|A Chain A, Crystal Structure Of Smu.1707c, A Putative Rrna
           Methyltransferase From Streptococcus Mutans Ua159
 gi|316983222|pdb|3L8U|B Chain B, Crystal Structure Of Smu.1707c, A Putative Rrna
           Methyltransferase From Streptococcus Mutans Ua159
          Length = 182

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 7/148 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+  A +    I      P +   + ++     + +      +L
Sbjct: 20  VVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSL 79

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHL 254
            D +          I   ++     E    ++    + G E KGL  +  ++ +     +
Sbjct: 80  NDFMNICSGK-LHLITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRI 138

Query: 255 HMPG-IIKALNVSNAAAVAL--YITQNH 279
            +    +++LN+SN   V +  Y     
Sbjct: 139 PVNDQHVRSLNLSNT--VCMIVYEALRQ 164


>gi|197119062|ref|YP_002139489.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|197088422|gb|ACH39693.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 245

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 17/153 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG + R+        +         +     K A  A   +   RI ++
Sbjct: 9   VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNPCQV-DHLDAVKFAVSARNLLDSARIFTS 67

Query: 195 LTDALQKMHSWGFQTIGLSSDSK------------KPLEQEIKNDKIALILGAEGKGLRP 242
           L DA+       F         K            +         ++AL+ G E  GL  
Sbjct: 68  LEDAIADCE---FSVATTRRHGKYRNEISTPAEIVERFSACAPASRMALVFGREDSGLTT 124

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                    A +       +LN+S A  +  Y 
Sbjct: 125 DEVALCRWQATIETADEFGSLNLSQAVLIFCYE 157


>gi|327190529|gb|EGE57623.1| putative tRNA/rRNA methyltransferase protein [Rhizobium etli
           CNPAF512]
          Length = 276

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 21/154 (13%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIG + R+   F    +          +     +AS A   I   R+  
Sbjct: 16  VIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGTRVYD 75

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL--------------EQEIKNDKIALILGAEGKG 239
            L  A+  ++         ++ S+                  +    +   ++ G E  G
Sbjct: 76  TLEQAIADLN----FVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEATGILFGRERWG 131

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L  +    A  +    +     +LN++ A  V L
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|190892001|ref|YP_001978543.1| tRNA/rRNA methyltransferase [Rhizobium etli CIAT 652]
 gi|190697280|gb|ACE91365.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CIAT
           652]
          Length = 276

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 21/154 (13%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIG + R+   F    +          +     +AS A   I   R+  
Sbjct: 16  VIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGTRVYD 75

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL--------------EQEIKNDKIALILGAEGKG 239
            L  A+  ++         ++ S+                  +    +   ++ G E  G
Sbjct: 76  TLEQAIADLN----FVYATTARSRDNYKPVRSPVFAAETLRTKFRAGEATGILFGRERWG 131

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L  +    A  +    +     +LN++ A  V L
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|239832084|ref|ZP_04680413.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
           intermedium LMG 3301]
 gi|239824351|gb|EEQ95919.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum
           intermedium LMG 3301]
          Length = 302

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL     P NIG + R+   F    +          S     +AS A   I   +   +
Sbjct: 38  IVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYDD 97

Query: 195 LTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKT 244
           L  A+  ++           GF+ +  + ++   L +  +   K  ++ G E  GL  + 
Sbjct: 98  LPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFGLSNEE 157

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A  +    +     +LN++ A  V L
Sbjct: 158 VGLADELVTFPVNPAFASLNIAQA--VLL 184


>gi|261417472|ref|YP_003251155.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373928|gb|ACX76673.1| tRNA/rRNA methyltransferase (SpoU) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327174|gb|ADL26375.1| RNA methyltransferase, TrmH family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 269

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 14/157 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  +VL     PHN+G + R   A  C  +       P    VL KS   A      + 
Sbjct: 2   RKFRVVLVEPEHPHNVGFVAR---AMHCYALPELYIVYPKRDKVLDKSYHTAANSHDILD 58

Query: 192 ----ISNLTDALQKMH---SWGFQTIGLSSDSK--KPLEQEIK-NDKIALILGAEGKGLR 241
               +    DA+       ++  +    S      + L   +  +  IAL+ G E  GL 
Sbjct: 59  NAKVVHKFEDAIGDCSCAVAYSRRIFASSIKHTMVQNLSDMLPEDGTIALVFGRESCGLA 118

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +     T    + +PG++ +LN+  A +++LY    
Sbjct: 119 LEEVNACTYQCEIPVPGLM-SLNLGQAVSISLYELCR 154


>gi|158333940|ref|YP_001515112.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
 gi|158304181|gb|ABW25798.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
          Length = 243

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 23/154 (14%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI--- 187
               ++V   V  P N+GA  R+        +   +      S      A G+   +   
Sbjct: 2   QFSFILVESEV--PENLGAAARALNTMGHTDLRLVRPRCDRNSEKAQVLAHGSQAVLSAA 59

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILG 234
           P  +  NL+DA   +H   F     +    +  +     +             ++A + G
Sbjct: 60  PIYQ--NLSDA---LHDIDFACATTARHRYEKYQYISVREVPQRLQAKGETLQQVAFVFG 114

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            E  GL     +    +  +       +LN++ A
Sbjct: 115 GERSGLNRHDIDCCDLITTIPQGNPYPSLNLAQA 148


>gi|114330429|ref|YP_746651.1| RNA methyltransferase [Nitrosomonas eutropha C91]
 gi|114307443|gb|ABI58686.1| RNA methyltransferase, TrmH family, group 1 [Nitrosomonas eutropha
           C91]
          Length = 248

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 63/170 (37%), Gaps = 24/170 (14%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            +  LD VR     +VL H + P NIGA  R+      + +      S  +S   A+++ 
Sbjct: 3   PASPLDNVR-----IVLSHTSHPGNIGATARAMKTMGLNKLYLINPKSFPDSEADARAS- 56

Query: 182 GALEHIPYIRI-SNLTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKND 227
            A + +    + SNL +AL       F    L++              +   L +  ++ 
Sbjct: 57  NARDILETAHVCSNLEEALGDT----FLAAALTARRRDLPHPTCNARQAAIELIRHAQHH 112

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +AL+ G E  GL             +       +LN++ A  V  Y  +
Sbjct: 113 PVALLFGRESAGLTAAEISHCQVTVQIPANPDCSSLNLAAAVQVMAYELR 162


>gi|255319194|ref|ZP_05360411.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Acinetobacter
           radioresistens SK82]
 gi|262379697|ref|ZP_06072853.1| rRNA methylase [Acinetobacter radioresistens SH164]
 gi|255303587|gb|EET82787.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Acinetobacter
           radioresistens SK82]
 gi|262299154|gb|EEY87067.1| rRNA methylase [Acinetobacter radioresistens SH164]
          Length = 280

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 27/161 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +V+ +   P NIG+ LR+        +I     +      +   A+GA + I  I+ +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLCRLILVAPRTYP-HQDIDALAAGAQDLIEQIQIVET 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---------------IALILGAEGKG 239
           L +A+Q  H       G S+ S+      +                   IA++ G E +G
Sbjct: 77  LEEAIQDCH----LVFGTSARSRTIPWPLLDARPAAQTSMQAVVSKQQEIAIVFGREDRG 132

Query: 240 LRPKTQETATSMAHLHM---PGIIKALNVSNAAAVALYITQ 277
           L  +    A     + +    G+   LNV+ A  V  Y  +
Sbjct: 133 LTNEELALANYHVTIPVNTDYGV---LNVAQAIQVICYEMR 170


>gi|116754672|ref|YP_843790.1| RNA methyltransferase [Methanosaeta thermophila PT]
 gi|116666123|gb|ABK15150.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta
           thermophila PT]
          Length = 243

 Score = 52.3 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 39/171 (22%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L +VL       N+GA+ RS   F  + ++  +          +   + A      ++ 
Sbjct: 2   KLRVVLVEPRYEGNVGAVARSMKNFGFNDLVLVRPCDIG-----SFGMAMAAHAKDILQS 56

Query: 193 SNLTDALQKMHSWGFQTIGLS------------SDSKKPLEQE--------IKNDKIALI 232
           +   D L+         +G +               + P             K+  +AL+
Sbjct: 57  AKSVDRLEDALEGVNLIVGTTGKRLSRDHHHLRLHLRVPFLTPSELAERLRDKDGTVALL 116

Query: 233 LGAEGKGLRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
           LG E  GL          +  +        M       N+S+AA V LY  
Sbjct: 117 LGREDWGLTNDELMACDVLVSIPTSDEYPVM-------NLSHAATVLLYEL 160


>gi|330807633|ref|YP_004352095.1| tRNA/rRNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375741|gb|AEA67091.1| putative tRNA/rRNA methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 256

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 18/156 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIG   R+        ++  +          A+++           ++ L
Sbjct: 7   VVLVNTSHPGNIGGAARAMKNMGLSRLVLVEPRLFPHHEADARASGAGDILANAQVVATL 66

Query: 196 TDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGLR 241
            DAL   +      +G S+                 K +E+  +  +IAL+ G E  GL 
Sbjct: 67  EDALVGCN----LVLGTSARDRRIPWPLLDPRECGTKVVEEAAQGFEIALVFGREDSGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +      H+       +LN+  A  V  Y  +
Sbjct: 123 NDELQRCHFHVHIPSDPEFSSLNLGAAVQVLSYEVR 158


>gi|227112706|ref|ZP_03826362.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 241

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVKPDSQAIALAAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D+  +        +G S+ S+                 QE ++  +AL+ G E  GL  
Sbjct: 63  VDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSAQEAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  +  Y  +
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157


>gi|124026236|ref|YP_001015352.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. NATL1A]
 gi|123961304|gb|ABM76087.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           NATL1A]
          Length = 245

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 12/155 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  L ++L     P N+G++ R    FS   +          +    K A   L+ +   
Sbjct: 4   NKTLKVILVEPAGPINVGSVARLCENFSVHELRLVSPKCEYLAQEAKKMAVRGLKILEKA 63

Query: 191 RI-SNLTDALQKMHSWGFQTIGLSSDSKKPL-------EQEIKNDK---IALILGAEGKG 239
           ++  +L  AL    S    T G     + PL          +K+++   IAL+ G E +G
Sbjct: 64  KVYEDLNSALSDC-SRIIATCGRKEHGEIPLNSNKDALSWVLKSEREETIALVFGREDRG 122

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           L  +    A  +  L+      +LN+S+A A+ L+
Sbjct: 123 LSNEELLKANKVISLNTSEDYPSLNLSHAVAIVLH 157


>gi|227329515|ref|ZP_03833539.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 241

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVKPDSQAIALAAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D+  +        +G S+ S+                 QE ++  +AL+ G E  GL  
Sbjct: 63  VDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGIRSAQEAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  +  Y  +
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157


>gi|76802521|ref|YP_327529.1| tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM 2160]
 gi|76558386|emb|CAI49977.1| probable tRNA/rRNA methyltransferase [Natronomonas pharaonis DSM
           2160]
          Length = 264

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 48/162 (29%), Gaps = 20/162 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             + + +     P N+G I RS   F    +                 A  A E +    
Sbjct: 2   PNIAVAVVGAETPGNVGTIARSMKNFGLSELYLVDPPELDPDGEAYGFAGHAREDV---- 57

Query: 192 ISNLTDA-LQKMHSWGFQTIGLSSDSKK---------------PLEQEIKNDKIALILGA 235
           + N T+     +    +     ++ ++                  E    +  + ++ G 
Sbjct: 58  LPNATEVEFSYLTEQFYTVACTATTNEDATKHVRYPFIEPAALSDELAGLDADVCIVFGR 117

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           E  GL          +  +   G    LN++ AA + LY  +
Sbjct: 118 ERVGLTNDELAQLDRICSIPADGDYPVLNLAQAATIVLYELR 159


>gi|156978209|ref|YP_001449115.1| 23S rRNA methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|156529803|gb|ABU74888.1| hypothetical protein VIBHAR_07014 [Vibrio harveyi ATCC BAA-1116]
          Length = 175

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 12/153 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S +++ L +  DP N+GA++R+A  +    +        + +A          E I  +
Sbjct: 4   QSTVILGLYNPKDPTNVGAVMRAAGCYDATQVRYNGTRY-NRAAKFRTDTKNMHERIDLV 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + +LT  L +      + + +        L      +    I G E   L  +  + A 
Sbjct: 63  EMDDLTAHLAE----DVKVVCVELAVGATALPLFAHPENAVYIFGPEDGSLPQEVVDKAD 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + ++   G +   N++    V LY   +  AK
Sbjct: 119 HVVYVPTNGCM---NLAATVNVVLY---DRLAK 145


>gi|330446686|ref|ZP_08310338.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490877|dbj|GAA04835.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 246

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIG+  R+        ++        +S  +A +A  A      +  + +
Sbjct: 7   VVLVGTSHPGNIGSAARAMKVMGLTNLVLVDPACEIDSHTIALAAGAA----DVVENAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
            + L +  S     +G S+ S+  LE    + +              +A++ G E  GL 
Sbjct: 63  VETLDEAVSDCGLVVGSSARSRT-LEWPQLDPRENGIKVVAESEHHNVAILFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +      ++       +LN++ A
Sbjct: 122 NEELQKCHCHVYIPANPEYSSLNLAMA 148


>gi|261866832|ref|YP_003254754.1| TrmH family RNA methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412164|gb|ACX81535.1| RNA methyltransferase, TrmH family, group 2 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 158

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     +    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKKHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              LQ       +   L++       +   +    L+ G E +G+      +        
Sbjct: 64  EAFLQS--EQPKRLFALTTKGTPAHSEVKFSLGDYLLFGPETRGIPMDILNSMPPEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN+ AV +Y       
Sbjct: 122 IPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|167035103|ref|YP_001670334.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1]
 gi|166861591|gb|ABY99998.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida GB-1]
          Length = 156

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 12/138 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+++R+A  +  + +  T +     +             IP I I +L   +      
Sbjct: 19  NVGSVMRAAGCYGVNSVFYTGKRY-ERARDFVTDTKRVHYDIPLIGIDDLQRIIP----L 73

Query: 206 GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   + +   +  +PL +    D+   I G E   L  + +       ++   G +   N
Sbjct: 74  GCTPVAVELVEGARPLPEYTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEGCM---N 130

Query: 265 VSNAAAVALYITQNHFAK 282
           ++    V LY   +  AK
Sbjct: 131 LAATVNVVLY---DRLAK 145


>gi|153009325|ref|YP_001370540.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151561213|gb|ABS14711.1| RNA methyltransferase, TrmH family, group 1 [Ochrobactrum anthropi
           ATCC 49188]
          Length = 281

 Score = 52.0 bits (124), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +VL     P NIG + R+   F    +          S     +AS A   I   +   +
Sbjct: 17  IVLVEPQLPENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYDD 76

Query: 195 LTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKT 244
           L  A+  ++           GF+ +  + ++   L +  +   K  ++ G E  GL  + 
Sbjct: 77  LPSAIADLNFVYATTARERDGFKQVRSAVEAGGELRRRFRTGEKTGILFGRERFGLSNEE 136

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVAL 273
              A  +    +     +LN++ A  V L
Sbjct: 137 VGLADELVTFPVNPAFASLNIAQA--VLL 163


>gi|238650706|ref|YP_002916559.1| rRNA methylase [Rickettsia peacockii str. Rustic]
 gi|238624804|gb|ACR47510.1| rRNA methylase [Rickettsia peacockii str. Rustic]
          Length = 230

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 60/156 (38%), Gaps = 16/156 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIGA  R+   F  + +          +     +A GA+  I + +I  
Sbjct: 4   IIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIFD 63

Query: 194 NLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIK------NDKIALILGAEGKGLRPK 243
           +L D+++ +          +    + +K  +  +        ++K+ ++ G E  GL  +
Sbjct: 64  SLEDSIKDLE----YLYATTCIKRAMNKDYVFSQNLPLDYPNSEKVGIMFGRENNGLSNE 119

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               A  +  ++      +LN++ A  +  Y    +
Sbjct: 120 EIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154


>gi|154706594|ref|YP_001424590.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
 gi|154355880|gb|ABS77342.1| rRNA methylase, SpoU family [Coxiella burnetii Dugway 5J108-111]
          Length = 240

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIGA  R+        +   K          A++A           + +L
Sbjct: 7   IVLVNPSHPGNIGAAARAMKTMGFSRLYLVKPELFPHEQATARAAGADAVLASARVVDDL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK------------IALILGAEGKGLRPK 243
           T AL+  +       G S+ S+  L   +K  +            IA++ G E  GL  +
Sbjct: 67  TAALEGCN----LVFGTSARSRT-LPWLLKTARECAEQSVQHQGNIAIVFGRERSGLTNE 121

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                     +       +LN++ A  +  Y  +
Sbjct: 122 ELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMR 155


>gi|332992265|gb|AEF02320.1| putative tRNA/rRNA methyltransferase (trmH family) protein
           [Alteromonas sp. SN2]
          Length = 255

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L   +   NIG+  R+        +               ++++ A      +  + +
Sbjct: 7   IILVSTSHTGNIGSTARAMKTMGLSSLYLVN----PVHEPDGQASALAAGAGDVLANAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
              L++  S     +G S+ S+                 QE+ N  +AL+ G E  GL  
Sbjct: 63  VSTLEEAVSDCGLVVGTSARSRTHSWPMLGPRECGEKLVQEVSNFPVALVFGRENSGLSN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAV--ALYITQ 277
           +  +       +       +LN+  AAAV    Y  +
Sbjct: 123 EELQQCHFHMCIPANPEYSSLNL--AAAVQTLCYEIR 157


>gi|146096583|ref|XP_001467855.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134072221|emb|CAM70923.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322501828|emb|CBZ36910.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 671

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 45/156 (28%)

Query: 153 SAVAFSCDGIITT---KRYSPSESAVL--AKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           +A A   DGI        +SP         ++A+ A    P + + N  D  + +     
Sbjct: 132 TACASPFDGIALFGEEDYFSPVSHPSCDDGETAAAAPNASPLVALENFADGARSIMRTRL 191

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET-------------------- 247
                            K   I L++G E  G+R                          
Sbjct: 192 PIAAT-----------QKGGCIRLVVGHENWGVRRSLLRAKDDTTQVPLCDRTRTAALAG 240

Query: 248 ---------ATSMAHLHMPGIIKALNVSNAAAVALY 274
                    A  + ++   G   +LNV+ +  +AL+
Sbjct: 241 IPRPTPAPVADMVVYVPQYGTTSSLNVATSLGIALF 276



 Score = 37.3 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +  ++  D  N G ++RSA AF  D I    R       +    A G+  + P + +
Sbjct: 430 GLSVFYENEYDQRNFGGLIRSANAFLVDYIFYVGRR-----KINVVGAVGSYHYTPPVHL 484

Query: 193 SNLTD 197
             L D
Sbjct: 485 GALPD 489


>gi|153208365|ref|ZP_01946703.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161831388|ref|YP_001597003.1| RNA methyltransferase [Coxiella burnetii RSA 331]
 gi|165919350|ref|ZP_02219436.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           334]
 gi|212212468|ref|YP_002303404.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
 gi|212218566|ref|YP_002305353.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
 gi|120576022|gb|EAX32646.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161763255|gb|ABX78897.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           331]
 gi|165916949|gb|EDR35553.1| RNA methyltransferase, TrmH family, group 1 [Coxiella burnetii RSA
           334]
 gi|212010878|gb|ACJ18259.1| rRNA methylase, SpoU family [Coxiella burnetii CbuG_Q212]
 gi|212012828|gb|ACJ20208.1| RRNA methylase, SpoU family [Coxiella burnetii CbuK_Q154]
          Length = 240

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 17/154 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + + P NIGA  R+        +   K          A++A           + +L
Sbjct: 7   IVLVNPSHPGNIGAAARAMKTMGFSRLYLVKPELFPHEQATARAAGADAVLASARVVDDL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK------------IALILGAEGKGLRPK 243
           T AL+  +       G S+ S+  L   +K  +            IA++ G E  GL  +
Sbjct: 67  TAALEGCN----LVFGTSARSRT-LPWPLKTARECAEQSVQHQGNIAIVFGRERSGLTNE 121

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                     +       +LN++ A  +  Y  +
Sbjct: 122 ELAQCQYHVTIPTEAAFSSLNLAQAVQILTYEMR 155


>gi|15892083|ref|NP_359797.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
 gi|15619205|gb|AAL02698.1| tRNA/rRNA methyltransferase [Rickettsia conorii str. Malish 7]
          Length = 221

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 60/156 (38%), Gaps = 16/156 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIGA  R+   F  + +          +     +A GA+  I + +I  
Sbjct: 4   IIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIFD 63

Query: 194 NLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIK------NDKIALILGAEGKGLRPK 243
           +L D+++ +          +    + +K  +  +        ++K+ ++ G E  GL  +
Sbjct: 64  SLEDSIKDLE----YLYATTCIKRAMNKDYVFSQNLPLDYPNSEKVGIMFGRENNGLSNE 119

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               A  +  ++      +LN++ A  +  Y    +
Sbjct: 120 EIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154


>gi|229586358|ref|YP_002844859.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
 gi|228021408|gb|ACP53116.1| tRNA/rRNA methyltransferase [Rickettsia africae ESF-5]
          Length = 230

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 60/156 (38%), Gaps = 16/156 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIGA  R+   F  + +          +     +A GA+  I + +I  
Sbjct: 4   IIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIFD 63

Query: 194 NLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIK------NDKIALILGAEGKGLRPK 243
           +L D+++ +          +    + +K  +  +        ++K+ ++ G E  GL  +
Sbjct: 64  SLEDSIKDLE----YLYATTCIKRAMNKDYVFSQNLPLDYPNSEKVGIMFGRENNGLSNE 119

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               A  +  ++      +LN++ A  +  Y    +
Sbjct: 120 EIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154


>gi|116748737|ref|YP_845424.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116697801|gb|ABK16989.1| RNA methyltransferase, TrmH family, group 1 [Syntrophobacter
           fumaroxidans MPOB]
          Length = 257

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 21/158 (13%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRI 192
           + +VL+  + P NIGA  RSA       ++           VL  +   A + +      
Sbjct: 8   IAIVLNEPHYPENIGAAARSAKNMGIRRLLVVNPLDFDLDRVLKMATHAARDVVEAMEIY 67

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGK 238
            +L +AL          +G ++       Q ++N +               A++ G E  
Sbjct: 68  DDLRNALAPFR----HVVGTTARLG-SRRQRVRNPRQMADELVSISRENEAAILFGTESS 122

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL  +       +  +       ++N++ A  +  Y  
Sbjct: 123 GLTNEQLRFCDFLVTIPTA-DFASINLAQAVMIVAYEL 159


>gi|315122619|ref|YP_004063108.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496021|gb|ADR52620.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 303

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 26/168 (15%)

Query: 126 LDAVRNSQLLMVLDHVNDPH---NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           L     S +++++    DP    NIG + R+ + F+   +          +     S++ 
Sbjct: 42  LQNSTKSPIIVLV----DPQLGENIGMVARAMLNFNITQLRLVNPRDGWPNDKARSSSAN 97

Query: 183 ALEHIPYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------- 227
           A   I  +R+ S+L +A+  ++         ++ S+   +                    
Sbjct: 98  ADHVIDSVRVFSSLKEAISDLN----FVYATTARSRDNFKSVFAPKEAAVVLNERIHSGQ 153

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            + LI G E  GL  +    + ++    +     +LN++ A  V  + 
Sbjct: 154 NVGLIFGCERSGLTNEEIALSNAIISFPVNPNFSSLNIAQAVLVMAWE 201


>gi|157828032|ref|YP_001494274.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932730|ref|YP_001649519.1| SpoU family rRNA methylase [Rickettsia rickettsii str. Iowa]
 gi|157800513|gb|ABV75766.1| tRNA/rRNA methyltransferase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907817|gb|ABY72113.1| rRNA methylase, SpoU family [Rickettsia rickettsii str. Iowa]
          Length = 230

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 60/156 (38%), Gaps = 16/156 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIGA  R+   F  + +          +     +A GA+  I + +I  
Sbjct: 4   IIILVAPQMGANIGATARAMKNFGLNELRIVAPRDGWPNEQARSNAVGAVNIIDHAKIFD 63

Query: 194 NLTDALQKMHSWGFQTIGLS----SDSKKPLEQEIK------NDKIALILGAEGKGLRPK 243
           +L D+++ +          +    + +K  +  +        ++K+ ++ G E  GL  +
Sbjct: 64  SLEDSIKDLE----YLYATTCIKRAMNKDYVFSQNLPLDYPNSEKVGIMFGRENNGLSNE 119

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
               A  +  ++      +LN++ A  +  Y    +
Sbjct: 120 EIAFANKIITINTT-EFSSLNIAQAVIIICYELLRN 154


>gi|94984180|ref|YP_603544.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
 gi|94554461|gb|ABF44375.1| tRNA/rRNA methyltransferase (SpoU) [Deinococcus geothermalis DSM
           11300]
          Length = 153

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 4/130 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+G + R+      D  +              ++    L+ +     +N 
Sbjct: 8   VVLFEPEKAGNVGNVARTCAVLGADLHLIRPFGFHLHDREFRRAVMDYLQGVTLHEHANW 67

Query: 196 TDALQKM-HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           T     +            +++        + D   L+ G E +GL P     A     L
Sbjct: 68  TAYQAALPPEARVWAFSTHAETFHTRAGFRRGDH--LVFGPESRGL-PVWLREALPALKL 124

Query: 255 HMPGIIKALN 264
             PG  ++LN
Sbjct: 125 PQPGGGRSLN 134


>gi|255017825|ref|ZP_05289951.1| hypothetical protein LmonF_08965 [Listeria monocytogenes FSL
           F2-515]
          Length = 81

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQ----ETATSMAHLHMPGIIKALNVSNAAAVALY 274
            ++    N     + G E  GL         E       + M   I++LN+SN AA+  Y
Sbjct: 1   DIDYSDTNKDYFFVFGKETTGLPDALLQENEENC---LRIPMTDHIRSLNLSNTAAILAY 57

Query: 275 ITQNH 279
                
Sbjct: 58  EALRQ 62


>gi|50122161|ref|YP_051328.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|81644316|sp|Q6D257|TRMJ_ERWCT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|49612687|emb|CAG76137.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 241

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + L
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVKPDSQAIALAAGAS----DVIGNATL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D+L +        +G S+ S+                 QE ++  +AL+ G E  GL  
Sbjct: 63  VDSLDQALEGCNLVVGTSARSRTLPWPMLEPRECGVRSAQEAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157


>gi|315037884|ref|YP_004031452.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           amylovorus GRL 1112]
 gi|325956357|ref|YP_004291769.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           acidophilus 30SC]
 gi|312276017|gb|ADQ58657.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           amylovorus GRL 1112]
 gi|325332922|gb|ADZ06830.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           acidophilus 30SC]
 gi|327183176|gb|AEA31623.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           amylovorus GRL 1118]
          Length = 186

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 3/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +      +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVEVHMHDDL 64

Query: 196 TDALQKMH--SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMA 252
              L+ +      +     SS +   ++   KN     + G E  GL     +E      
Sbjct: 65  NAFLKTLGPDDEMYLISKFSSKNYSQVDYTDKNKNYYFVFGKETTGLPETFMREYYDRNL 124

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I+  N+SN+ A+ L      
Sbjct: 125 RIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|169838212|ref|ZP_02871400.1| hypothetical protein cdivTM_14129 [candidate division TM7
           single-cell isolate TM7a]
          Length = 35

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             E +   A + + G I++LNVS A  +    T+N 
Sbjct: 1   MIENSDIKAIIPIYGNIESLNVSVATGI-FSETRNR 35


>gi|149187616|ref|ZP_01865913.1| rRNA methylase, putative [Vibrio shilonii AK1]
 gi|148838496|gb|EDL55436.1| rRNA methylase, putative [Vibrio shilonii AK1]
          Length = 173

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA--KSASGALEHIP 188
            S +++ L +   P N+GA++R+A  ++   +          S  +          E I 
Sbjct: 4   ESTVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTR---YSRAVRFQTDTQNTHERIE 60

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
            + +++LT  +          + +  +     L      D    + G E   L  +  + 
Sbjct: 61  LVEMNDLTADVAD----NVSVVCVEFAVGATSLPSFNHPDNAVYVFGPEDGSLPQELVDK 116

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A  + ++   G +   N++    V LY   +  AK
Sbjct: 117 ADHVVYVPTHGCM---NLAATVNVVLY---DRLAK 145


>gi|297570545|ref|YP_003691889.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926460|gb|ADH87270.1| RNA methyltransferase, TrmH family, group 1 [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 304

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 25/148 (16%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISNLTDALQKMHS 204
           NIG+  R A+      +I           +L  +   A   I    R + + +AL     
Sbjct: 29  NIGSAARIAMNMGIPSLIVVGEREYQRDKMLKTATHKAAALIDRLERHATVAEALAPFG- 87

Query: 205 WGFQTIGLS----------------SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
              + I  S                  +  P    +  +++AL+ G E +GL  +     
Sbjct: 88  ---RVIATSARQGRQRGMCPPPRTAMQAALPY---LAANRVALLFGPEDRGLTNEDLYLC 141

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +  +       +LN++ A AV  Y  
Sbjct: 142 HQLTTIPTA-DFSSLNLAQAVAVLCYEL 168


>gi|284922482|emb|CBG35569.1| putative RNA methyltransferase [Escherichia coli 042]
          Length = 246

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETTHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|315180990|gb|ADT87904.1| RNA methyltransferase, TrmH family [Vibrio furnissii NCTC 11218]
          Length = 243

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGFKQMVL----VDPQCEVDAQAIALAAGASDIALNAQI 62

Query: 196 TDALQ-KMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGL 240
            D L   +   G   +G S+ S+  LE  + +                +A++ G E  GL
Sbjct: 63  VDTLDSAIADCGL-VVGTSARSRT-LEWPMLDPRECGEKFAVEGEQHPVAIVFGRERTGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +       +       +LN++ A     Y  +
Sbjct: 121 TNDELQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIR 157


>gi|319407233|emb|CBI80872.1| RNA methyltransferase [Bartonella sp. 1-1C]
          Length = 273

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           ++VL       NIG + R+   F    +   K      +     +AS A   I   +   
Sbjct: 16  IIVLVEPQLSENIGMVARAMANFGLSKLRLVKPREIFPNEKARATASKADHIINDTLIFD 75

Query: 194 NLTDALQKMH---------SWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPK 243
            L DA+  ++           GF+T+  + ++   L   E    K  ++ G E  GL   
Sbjct: 76  TLCDAIADLNYVYATTARERCGFKTVKSAVEAANILRCYENIGHKTGILFGRERWGLENN 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               A  +    +     +LN++ A  V L
Sbjct: 136 EISLADEIITFPVNPAFASLNIAQA--VLL 163


>gi|145628348|ref|ZP_01784149.1| rRNA methylase [Haemophilus influenzae 22.1-21]
 gi|144980123|gb|EDJ89782.1| rRNA methylase [Haemophilus influenzae 22.1-21]
          Length = 160

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 8/150 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPKTQETA--TSM 251
              L+       +   L++       Q     K+   L+ G E +G+             
Sbjct: 64  EAFLESEKPK--RLFALTTKGCPAHSQVKF--KLGDYLMFGPETRGIPMSILNEMPMEQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    +++N+SN+ AV +Y       
Sbjct: 120 IRIPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|68536793|ref|YP_251498.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411]
 gi|260579148|ref|ZP_05847040.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC
           43734]
 gi|68264392|emb|CAI37880.1| putative rRNA methylase, SpoU class [Corynebacterium jeikeium K411]
 gi|258602747|gb|EEW16032.1| SpoU rRNA methylase family protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 171

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 7/143 (4%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N  L +V D    P N G  +R          +        +   + ++     E     
Sbjct: 11  NPPLHVVFDRPEIPPNTGNAIRMCAGTGASLHLAGPLAFKFDDKHVRRAGLDYHELADVH 70

Query: 191 RISNLTDALQKM----HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
               + +AL  +       G +    ++ +     +        L+ G E  GL  +   
Sbjct: 71  VHEGIDEALAHVTDPARGSG-RVFAFTAQTGTWFTEVDYQPGDVLLFGPEPTGLADEVLA 129

Query: 247 --TATSMAHLHMPGIIKALNVSN 267
               T+   + M    +++N+SN
Sbjct: 130 DPRVTAKVRIPMLPGRRSMNLSN 152


>gi|16272707|ref|NP_438925.1| putative RNA methyltransferase [Haemophilus influenzae Rd KW20]
 gi|145630511|ref|ZP_01786291.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|260579857|ref|ZP_05847687.1| rRNA methylase [Haemophilus influenzae RdAW]
 gi|260581580|ref|ZP_05849377.1| rRNA methylase [Haemophilus influenzae NT127]
 gi|1176303|sp|P44868|TRML_HAEIN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL
 gi|28948421|pdb|1J85|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766), A
           Truncated Sequence Homolog Of Trna (Guanosine-2'-O-)
           Methyltransferase (Spou)
 gi|28948677|pdb|1MXI|A Chain A, Structure Of Yibk From Haemophilus Influenzae (Hi0766): A
           Methyltransferase With A Cofactor Bound At A Site Formed
           By A Knot
 gi|1573774|gb|AAC22424.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
 gi|144983901|gb|EDJ91343.1| rRNA methylase [Haemophilus influenzae R3021]
 gi|260093141|gb|EEW77074.1| rRNA methylase [Haemophilus influenzae RdAW]
 gi|260095173|gb|EEW79064.1| rRNA methylase [Haemophilus influenzae NT127]
          Length = 160

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 8/150 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     R    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LILGAEGKGLRPKTQETA--TSM 251
              L+       +   L++       Q     K+   L+ G E +G+             
Sbjct: 64  EAFLESEKPK--RLFALTTKGCPAHSQVKF--KLGDYLMFGPETRGIPMSILNEMPMEQK 119

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             + M    +++N+SN+ AV +Y       
Sbjct: 120 IRIPMTANSRSMNLSNSVAVTVYEAWRQLG 149


>gi|84389413|ref|ZP_00991219.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
 gi|84376928|gb|EAP93801.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
          Length = 170

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 10/152 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S +++ L +   P N+GA++R+A  +  D +  T +    ++A        A   IP  
Sbjct: 3   KSHVIIGLTNPKSPTNVGAVMRAAGCYQVDEVKYTGQRY-EKAAKFHTDTKSAARTIPLT 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
              +  D L          + L+ +   PL +    +    I G E   +     + A  
Sbjct: 62  AAESFLDNLDA--ETQIVCVELA-EGATPLPRFKHPENAIYIFGPEDGSISQDVADRADH 118

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 119 VVYVPTVGCM---NLAATVNVLLY---DRLAK 144


>gi|330836257|ref|YP_004410898.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
 gi|329748160|gb|AEC01516.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta coccoides DSM
           17374]
          Length = 257

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 25/174 (14%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSA 180
              LD +R     MVL    D  NIG++ R+        ++       +  +   +   A
Sbjct: 4   QENLDRIR-----MVLVEPQDGANIGSVCRAMKTMGLSRLVIAGGKTRADYDDDRVRTLA 58

Query: 181 SGALE-HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------- 226
             A +     +   +L  AL         T+G +    K  +    N             
Sbjct: 59  LHAADVWENCVWEQSLESALATS----ILTVGATRRRGKYRKFSFINPSQLADRISSTPA 114

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
             ++++ G E  GL        + +  +       +LN++ A  +  Y   +  
Sbjct: 115 GPVSIVFGREANGLTDDEVGQCSLVVTIPTSDAFPSLNLAQAVQIIAYSLYDRL 168


>gi|284008843|emb|CBA75632.1| methyltransferase [Arsenophonus nasoniae]
          Length = 167

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 10/155 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIEPLGFTWDDKRLRRAGLDYHEFANIQRHHDY 63

Query: 196 TDAL-------QKMHS-WGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L         + +  G +   L++         +      L+ G E +GL     + 
Sbjct: 64  FAFLTAVALSKAHLKTPSGNRLFALTTKGTPSHSSVVYQPGDYLMFGPETRGLPAYVLDG 123

Query: 248 --ATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +    + M    +++N+SN+ AV ++      
Sbjct: 124 LPTSQKIRIPMLADSRSMNLSNSVAVVVFEAWRQL 158


>gi|299770509|ref|YP_003732535.1| rRNA methylase [Acinetobacter sp. DR1]
 gi|298700597|gb|ADI91162.1| rRNA methylase [Acinetobacter sp. DR1]
          Length = 279

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 26/160 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIR-IS 193
           +V+ +   P NIG+ LR+         ++   +  P     +   A+GA +   ++  + 
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPKTYP--HPDIQALAAGAQDLFEHLEIVD 75

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDK-----------IALILGAEGKG 239
            L DA++  H       G S+ S+    PL       K           IA++ G E +G
Sbjct: 76  TLEDAIKDCH----LVFGTSARSRTIPWPLLDVRPAAKEAIKATTQGQQIAIVFGREDRG 131

Query: 240 LRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQ 277
           L  +    A     + +     +  LNV+ A  V  Y  +
Sbjct: 132 LTNEELALANYHLTIPVNPDYGV--LNVAQAIQVVCYELR 169


>gi|300361264|ref|ZP_07057441.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353883|gb|EFJ69754.1| TrmH family RNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 185

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +      +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPK-TQETATSM 251
              L+ +     +   +S  S K   Q    D       + G E  GL     +E     
Sbjct: 65  DTFLKTL-GPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYYDRN 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I+  N+SN+ A+ L      
Sbjct: 124 LRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|254502928|ref|ZP_05115079.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
           DFL-11]
 gi|222438999|gb|EEE45678.1| RNA methyltransferase, TrmH family, group 1 [Labrenzia alexandrii
           DFL-11]
          Length = 270

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 17/169 (10%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A+      ++L       NIG   R+   F    +          S     +AS A   I
Sbjct: 13  AITARPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARAAASRADHVI 72

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDSKKP-----------LEQEIKNDK---IALIL 233
             +++   T+A   +    F     ++ S++            ++     ++   +  + 
Sbjct: 73  DKVQVFETTEA--AIADLNF-VYATTARSREVPKPVRGPDEAAVKAVDLGERQHGVGYLF 129

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G E  GL  +    A  +  L +     +LN++ A  V  Y  +   +K
Sbjct: 130 GRERWGLNNEEVALADEIVTLPVDPDFASLNIAQAVLVCAYEWRKTASK 178


>gi|170289746|ref|YP_001736562.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173826|gb|ACB06879.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 246

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 16/156 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L+++L       N+G I R+   F    +   +           ++ + A+     I 
Sbjct: 2   PDLIVILVEPEKADNVGMIARAMKNFGFYELRVVR----PMFESFDRAIAAAMRARDVIE 57

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP------------LEQEIKNDKIALILGAEGKG 239
              +   L++        IG ++   +             L     +    L+LG E  G
Sbjct: 58  RMEILTTLEEARRGVDLMIGTTARVSRYSVERRAIPIRDLLSSISWDAVYGLVLGRESIG 117

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           L  +       +A +       ALNV+NAAA+ LY 
Sbjct: 118 LTTEELSYCDIVATIPSSEDYPALNVANAAAIILYE 153


>gi|167720292|ref|ZP_02403528.1| putative tRNA/rRNA methyltransferase protein [Burkholderia
           pseudomallei DM98]
          Length = 192

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           Q+++   IAL+ G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 19  QQVRTGDIALVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 74


>gi|255264175|ref|ZP_05343517.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
           R2A62]
 gi|255106510|gb|EET49184.1| RNA methyltransferase, TrmH family, group 1 [Thalassiobium sp.
           R2A62]
          Length = 302

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 15/178 (8%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
           T P+      A  + Q   VL       NIGA  R+   F  D +          +    
Sbjct: 45  TMPVPKAQQSASPHPQPSFVLIRPQMGENIGASARAMWNFGLDRMRIAAPRDGWPNPNAV 104

Query: 178 KSASGALEHIPYIRI-SNLTDALQKM--------HSWGFQTIGLSSDSKKPLE--QEIKN 226
             ASGA   +    +  +  DA+              G     +S ++   L   +    
Sbjct: 105 AMASGAGRLLDEALVYDSTADAVADCTYVFATTARPRGLTKPVMSPEAAMELAAQKVAAG 164

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFAK 282
           +K+A++ G E  G+       A ++  + +     +LN++    V L  Y  Q   A+
Sbjct: 165 EKVAVMFGPERAGMENDDIARANAIISVPVNPDFASLNLAQC--VLLVGYEWQRQVAQ 220


>gi|42518756|ref|NP_964686.1| hypothetical protein LJ0831 [Lactobacillus johnsonii NCC 533]
 gi|227889595|ref|ZP_04007400.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC
           33200]
 gi|268319843|ref|YP_003293499.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
 gi|41583042|gb|AAS08652.1| hypothetical protein LJ_0831 [Lactobacillus johnsonii NCC 533]
 gi|227849843|gb|EEJ59929.1| SpoU family RNA methyltransferase [Lactobacillus johnsonii ATCC
           33200]
 gi|262398218|emb|CAX67232.1| rRNA methyltransferase [Lactobacillus johnsonii FI9785]
          Length = 185

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +      +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPK-TQETATSM 251
              L  +     +   +S  S K   Q    D       + G E  GL     +E     
Sbjct: 65  EAFLNTL-GPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYYDRN 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I+  N+SN+ A+ L      
Sbjct: 124 LRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|325474454|gb|EGC77641.1| TrmH family RNA methyltransferase [Treponema denticola F0402]
          Length = 251

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 18/156 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++L       NIGA+ R         +  T      +   + K A  A       R   
Sbjct: 6   TIILCRPETSANIGAVCRVMANTGFSDLRITGNKEDYDETEVLKLALHASHVWKNARFY- 64

Query: 195 LTDALQKMHSW--------------GFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGK 238
               ++ +                 G +   +G+S +      ++    ++ L+ G E  
Sbjct: 65  -PPTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPEDLCLDLKKFYGGRLGLVFGNERT 123

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           GL  +     +   ++       + N+S+A  +  Y
Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY 159


>gi|320459086|dbj|BAJ69707.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 220

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 76  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDNLVESMP 135

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++ + K   +        L+ G E G  +       E         L M  
Sbjct: 136 NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGD-IPDPMDIMEGPHVAEQVRLPMRP 192

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 193 SLRSLNLTNCASIAIYEAWRQLN 215


>gi|296453627|ref|YP_003660770.1| tRNA/rRNA methyltransferase SpoU [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183058|gb|ADG99939.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 199

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 55  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDNLVESMP 114

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++ + K   +        L+ G E G  +       E         L M  
Sbjct: 115 NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGD-IPDPMDIMEGPHVAEQVRLPMRP 171

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 172 SLRSLNLTNCASIAIYEAWRQLN 194


>gi|291456188|ref|ZP_06595578.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
 gi|291381465|gb|EFE88983.1| RNA methyltransferase, TrmH family [Bifidobacterium breve DSM
           20213]
          Length = 220

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 76  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDNLVESMP 135

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++ + K   +        L+ G E G  +       E         L M  
Sbjct: 136 NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGD-IPDPMDIMEGPHVAEQVRLPMRP 192

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 193 SLRSLNLTNCASIAIYEAWRQLN 215


>gi|239622392|ref|ZP_04665423.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514389|gb|EEQ54256.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 223

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 79  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDNLVESMP 138

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++ + K   +        L+ G E G  +       E         L M  
Sbjct: 139 NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGD-IPDPMDIMEGPHVAEQVRLPMRP 195

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 196 SLRSLNLTNCASIAIYEAWRQLN 218


>gi|213692908|ref|YP_002323494.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213524369|gb|ACJ53116.1| tRNA/rRNA methyltransferase (SpoU) [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 169

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 25  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDNLVESMP 84

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++ + K   +        L+ G E G  +       E         L M  
Sbjct: 85  NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGD-IPDPMDIMEGPHVAEQVRLPMRP 141

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 142 SLRSLNLTNCASIAIYEAWRQLN 164


>gi|23465775|ref|NP_696378.1| RNA methyltransferase [Bifidobacterium longum NCC2705]
 gi|23326465|gb|AAN25014.1| probable RNA methyltransferase [Bifidobacterium longum NCC2705]
          Length = 169

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 25  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDNLVESMP 84

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++ + K   +        L+ G E G  +       E         L M  
Sbjct: 85  NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGD-IPDPMDIMEGPHVAEQVRLPMRP 141

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 142 SLRSLNLTNCASIAIYEAWRQLN 164


>gi|46191126|ref|ZP_00206684.1| COG0219: Predicted rRNA methylase (SpoU class) [Bifidobacterium
           longum DJO10A]
 gi|189439831|ref|YP_001954912.1| hypothetical protein BLD_0968 [Bifidobacterium longum DJO10A]
 gi|227546389|ref|ZP_03976438.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|312133236|ref|YP_004000575.1| cspr [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482584|ref|ZP_07941599.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688607|ref|YP_004208341.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|322690593|ref|YP_004220163.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428266|gb|ACD98414.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium longum
           DJO10A]
 gi|227213370|gb|EEI81242.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|291517295|emb|CBK70911.1| Predicted rRNA methylase (SpoU class) [Bifidobacterium longum
           subsp. longum F8]
 gi|311772439|gb|ADQ01927.1| CspR [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916006|gb|EFV37413.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455449|dbj|BAJ66071.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459943|dbj|BAJ70563.1| putative RNA methyltransferase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 220

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 76  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDNLVESMP 135

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++ + K   +        L+ G E G  +       E         L M  
Sbjct: 136 NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGD-IPDPMDIMEGPHVAEQVRLPMRP 192

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 193 SLRSLNLTNCASIAIYEAWRQLN 215


>gi|325282500|ref|YP_004255041.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           proteolyticus MRP]
 gi|324314309|gb|ADY25424.1| RNA methyltransferase, TrmH family, group 1 [Deinococcus
           proteolyticus MRP]
          Length = 266

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 16/157 (10%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D    S L +VL     P NIG+  R+ +      +          S      A  A E 
Sbjct: 10  DLSHASSLAVVLVSPKTPGNIGSAARAMLNMGASDLRLVAPRCDHLSKEARAFAVHAEEL 69

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL----EQEIKNDKI------ALILGAE 236
           +    +       + +        G S+  +  +           ++      AL+ G E
Sbjct: 70  LERAPVY--ATLAEALADRDLSI-GTSARERADMPRPQHPAALRGRVRAATSPALVFGPE 126

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             GL     E   +   +       +LN++ A  V L
Sbjct: 127 ETGLLNADLEQCQATVRIPTADYA-SLNLAQA--VLL 160


>gi|209694822|ref|YP_002262750.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238]
 gi|208008773|emb|CAQ78972.1| putative RNA methyltransferase [Aliivibrio salmonicida LFI1238]
          Length = 152

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+++R+A  +  + +  T R           + S  L ++P I + +L D +    
Sbjct: 16  PENVGSVMRAAGCYGVNSVFYTGRRYDIAKKFCTDTKSQHL-NVPLIGVEDLKDIIP--- 71

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIK 261
                 + +   +  KPL       +   I G E  G L+ +  +      ++   G + 
Sbjct: 72  -LDCVPVAVDLIEGAKPLPDYKHPPRAFYIFGPE-DGTLKKEITDFCRETIYVPTNGCM- 128

Query: 262 ALNVSNAAAVALYIT 276
             N++ A  V +Y  
Sbjct: 129 --NLAAAVNVIMYDR 141


>gi|226953026|ref|ZP_03823490.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226836233|gb|EEH68616.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 278

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 24/159 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + I +I  +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPKTYP-HPDIDALAAGAQDLIEHIDIVET 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP--------------LEQEIKNDKIALILGAEGKGL 240
           L  A+Q  H       G S+ S+                L+   +   IA++ G E +GL
Sbjct: 77  LEQAIQDCH----LVFGTSARSRTIPWPLLDVRPAAKEALQAASQQQNIAIVFGREDRGL 132

Query: 241 RPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQ 277
             +    A     + +     +  LNV+ A  V  Y  +
Sbjct: 133 TNEELALANYHLTIPVNPEYGV--LNVAQAIQVVCYELR 169


>gi|289595721|ref|YP_003482417.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|289533508|gb|ADD07855.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 235

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 34/153 (22%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG + R+   F    +I      P       + +  A      I  + + +  +++  
Sbjct: 14  GNIGFLARTMANFGFKNLILV--NPPELDEDAYRFSKHARY---IIENAEILNNFEELRR 68

Query: 205 WGFQTIGLSSDSKKPLEQ---------------EIKNDKIALILGAEGKGLRPKTQETAT 249
                +  S  S K  ++                  +  I ++ G E  GL  +  E   
Sbjct: 69  SLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFSGNIGIVFGRENYGLYNEEIEKCD 128

Query: 250 SMAHLH-------MPGIIKALNVSNAAAVALYI 275
           S+  +        M       N+++AAA+ LY 
Sbjct: 129 SLITIPTSEEYPIM-------NITHAAAIILYE 154


>gi|313497626|gb|ADR58992.1| TRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida BIRD-1]
          Length = 156

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+++R+A  +  + +  T +     +             IP I I +L   +      
Sbjct: 19  NVGSVMRAAGCYGVNSVFYTGKRY-ERARDFVTDTKRVHYDIPLIGIDDLQRIIP----L 73

Query: 206 GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   + +   +  +PL      D+   I G E   L  + +       ++   G +   N
Sbjct: 74  GCTPVAVELVEGARPLPDYTHPDRAIYIFGPEDGSLSEEVRGWCEETIYIPTEGCM---N 130

Query: 265 VSNAAAVALYIT 276
           ++    V LY  
Sbjct: 131 LAATVNVVLYDR 142


>gi|309784714|ref|ZP_07679347.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 1617]
 gi|308927084|gb|EFP72558.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 1617]
          Length = 245

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVTPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|300710881|ref|YP_003736695.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
 gi|299124564|gb|ADJ14903.1| hypothetical protein HacjB3_07590 [Halalkalicoccus jeotgali B3]
          Length = 238

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 14/155 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +V+     P N+G I R+   F    +                 A  A E + P   +  
Sbjct: 4   VVIVDAETPGNVGTIARAMKNFGFSDLKLVDPPELDRDGEAYGFAGQAREDVLPDAEVVT 63

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK------------IALILGAEGKGLRP 242
             + ++  H+ GF T   + D++K +    +               +AL+ G E  GL  
Sbjct: 64  FDEVIEGFHTVGF-TATTNEDARKHVRFPFRTPTDLAADLASVETDVALVFGRERVGLMN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +       +  +        LN+  AA VALY  +
Sbjct: 123 EELARLDQICAIPASADYPVLNLGQAATVALYELR 157


>gi|158423491|ref|YP_001524783.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158330380|dbj|BAF87865.1| RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 289

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 11/152 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-IS 193
           +++L       N+G+  R+   F    +          +       +GA   +   +   
Sbjct: 18  VVILVEPQLGENVGSAARAMGNFGLSRLRVVNPREGWPNEKARIFCAGADRILDDAQLFP 77

Query: 194 NLTDALQKM--------HSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +L  AL  +           G      G    ++  + +    + +AL+ G E  GL  +
Sbjct: 78  DLRSALADVSYAVATTARERGMAKPVNGADVVAQDAVVRLKAGEDVALVFGRERTGLYTE 137

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 S+  L +     +LN++ A AV  Y 
Sbjct: 138 EVSLCDSILTLPVNPAFASLNLATAVAVTAYE 169


>gi|90578961|ref|ZP_01234771.1| 23S rRNA methyltransferase [Vibrio angustum S14]
 gi|90439794|gb|EAS64975.1| 23S rRNA methyltransferase [Vibrio angustum S14]
          Length = 155

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 20/144 (13%)

Query: 144 PHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           P N+G+++R+A  +  + +  T     ++        K++      IP I + +L   + 
Sbjct: 19  PENVGSVMRAAGCYGVNSVFYTGTRYDHAAQFCTDTKKAS----LDIPLIGVEDLKKIIP 74

Query: 201 KMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPG 258
                G   + +   +  K L       +   I G E  G L+ +  +      ++   G
Sbjct: 75  I----GCVPVAVDLIEGAKALPDYKHPKRAFYIFGPE-DGTLKKEITDFCRETIYVPTNG 129

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
              ++N++ A  V LY   +  AK
Sbjct: 130 ---SMNLAAAVNVILY---DRLAK 147


>gi|89073005|ref|ZP_01159552.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
 gi|89051223|gb|EAR56679.1| 23S rRNA methyltransferase [Photobacterium sp. SKA34]
          Length = 155

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 20/144 (13%)

Query: 144 PHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           P N+G+++R+A  +  + +  T     ++        K++      IP I + +L   + 
Sbjct: 19  PENVGSVMRAAGCYGVNSVFYTGSRYDHAAQFCTDTKKAS----LDIPLIGVEDLKKIIP 74

Query: 201 KMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPG 258
                G   + +   +  K L       +   I G E  G L+ +  +      ++   G
Sbjct: 75  I----GCVPVAVDLIEGAKALPDYKHPKRAFYIFGPE-DGTLKKEITDFCRETIYVPTNG 129

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
              ++N++ A  V LY   +  AK
Sbjct: 130 ---SMNLAAAVNVILY---DRLAK 147


>gi|325121908|gb|ADY81431.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 271

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 26/160 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIR-IS 193
           +V+ +   P NIG+ LR+         ++   +  P     +   A+GA +   ++  + 
Sbjct: 10  IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPKTYP--HPDIQALAAGAQDLFEHLEIVD 67

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDK-----------IALILGAEGKG 239
            L DA++  H       G S+ S+    PL       K           IA++ G E +G
Sbjct: 68  TLEDAIKDCH----LVFGTSARSRTIPWPLLDVRPAAKEAIKATCQGQQIAIVFGREDRG 123

Query: 240 LRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQ 277
           L  +    A     + +     +  LNV+ A  V  Y  +
Sbjct: 124 LTNEELALANYHLTIPVNPDYGV--LNVAQAIQVVCYELR 161


>gi|261337660|ref|ZP_05965544.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM
           20093]
 gi|270277098|gb|EFA22952.1| RNA methyltransferase, TrmH family [Bifidobacterium gallicum DSM
           20093]
          Length = 222

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +        +   L ++     +    +   N    ++ M 
Sbjct: 78  PGNTGSAIRLCAVTGTILHLVEPLGFNLKDTKLRRAGLDYHDMAHVVLHPNFESLVESMP 137

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
               + I  ++ + K   +        L+ G E G          G  P   E       
Sbjct: 138 DS--RIIAFTAHATKLYTEVEYRPNDILLFGPEPGNIPDPTDIMFG--PHVAEQ----VR 189

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 190 LPMRPSLRSLNLTNCASIAIYEAWRQLG 217


>gi|329667696|gb|AEB93644.1| rRNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 185

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +      +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTVLDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPK-TQETATSM 251
              L  +     +   +S  S K   Q    D       + G E  GL     +E     
Sbjct: 65  ETFLNTL-GPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYYDRN 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I+  N+SN+ A+ L      
Sbjct: 124 LRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|262278807|ref|ZP_06056592.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262259158|gb|EEY77891.1| rRNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 279

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 26/160 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIR-IS 193
           +V+ +   P NIG+ LR+         ++   +  P     +   A+GA +   ++  + 
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPKTYP--HPDIQALAAGAQDLFEHLEIVD 75

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDK-----------IALILGAEGKG 239
            L DA++  H       G S+ S+    PL       K           IA++ G E +G
Sbjct: 76  TLEDAIKDCH----LVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRG 131

Query: 240 LRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQ 277
           L  +    A     + +     +  LNV+ A  V  Y  +
Sbjct: 132 LTNEELALANYHLTIPVNPDYGV--LNVAQAIQVVCYELR 169


>gi|42527587|ref|NP_972685.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|41818415|gb|AAS12604.1| RNA methyltransferase, TrmH family [Treponema denticola ATCC 35405]
          Length = 251

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 49/156 (31%), Gaps = 18/156 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++L       NIGA+ R         +  T      +   + K A  A       R   
Sbjct: 6   TIILCRPETSANIGAVCRVMANTGFSDLRITGTKEDYDETEVLKLALHASHVWKKARFY- 64

Query: 195 LTDALQKMHSW--------------GFQT--IGLSSDSKKPLEQEIKNDKIALILGAEGK 238
               ++ +                 G +   +G+S +      ++    ++ L+ G E  
Sbjct: 65  -PPTIEGLKEAASDCSVLIGTSRRTGHKRKDLGMSPEDLCLDLKKFYGGRLGLVFGNERT 123

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           GL  +     +   ++       + N+S+A  +  Y
Sbjct: 124 GLIDEELNICSFSVNIPAEEDFGSYNLSHAVLILCY 159


>gi|39996575|ref|NP_952526.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983456|gb|AAR34849.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
           sulfurreducens PCA]
 gi|298505591|gb|ADI84314.1| tRNA (2'O-methyl-C32/U32)-methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 255

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 21/161 (13%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             ++ +VL     P N+G + R+        +   K     +     K A  A + +   
Sbjct: 13  KERVAIVLVEPQSPGNVGMVCRAMKNMGLGELRIVKGCR-LDHPEALKFAVSARDLLERA 71

Query: 191 RI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGA 235
           R+  +L DAL                 K    QEI + K               AL+ G 
Sbjct: 72  RVFESLEDALSDTE---LSVATTRRHGK--YRQEIFSPKEIVSKFAANLAGNRAALVFGR 126

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           E  GL           A +       +LN++ A  V  Y  
Sbjct: 127 EDNGLTTDELSLCRWHATIPSSEEYGSLNLAQAVMVFCYEL 167


>gi|304321241|ref|YP_003854884.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
           HTCC2503]
 gi|303300143|gb|ADM09742.1| hypothetical protein PB2503_08434 [Parvularcula bermudensis
           HTCC2503]
          Length = 293

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           L++L       NIGA  R+ + F   G+          +A     A+GA E +  +R+  
Sbjct: 40  LVILVRPQLGQNIGATARAMLNFGLKGLRLVAPRDGWPNADAKAMAAGAAEVLDGVRVFG 99

Query: 194 NLTDALQKMHSWGFQTIGLSSDSK-------KPLE-------QEIKNDKIALILGAEGKG 239
            + +A+   H      +  ++  +        P++       +  + ++ A++ GAE  G
Sbjct: 100 TVAEAVADCH----YVVATTARHRGVFLPVHTPVDTAGELRVRAARAERTAILFGAEKAG 155

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           L  +    A ++  + +     +LN++ A  V  Y 
Sbjct: 156 LETEEVAHAHALVTIPVNPAFPSLNLAQAVLVVAYE 191


>gi|254467895|ref|ZP_05081301.1| rRNA methylase [beta proteobacterium KB13]
 gi|207086705|gb|EDZ63988.1| rRNA methylase [beta proteobacterium KB13]
          Length = 243

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 16/158 (10%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           VL H + P NIG+  R+        + +      P E A     ASGA + + + ++ S+
Sbjct: 14  VLSHTSHPGNIGSTARAIKTMGFAQLSLINPEKFPHEDADAL--ASGAKDLLQHAQVASS 71

Query: 195 LTDALQKMHSW-GFQT---------IGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L +     +   GF           + +   ++K +  E+KN+K AL+ G E  GL+ + 
Sbjct: 72  LEEVTADCNVLIGFTARKRELTQEHLSIEEIAQKII--ELKNNKFALLFGNETSGLKNEE 129

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            +    +A++       +LN+S A  V  Y  + +F K
Sbjct: 130 IQHCHYLAYIDANKEYSSLNLSQAVQVTAYELRKNFNK 167


>gi|254169084|ref|ZP_04875921.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|197621923|gb|EDY34501.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 243

 Score = 51.2 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 34/153 (22%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG + R+   F    +I      P       + +  A      I  + + +  +++  
Sbjct: 22  GNIGFLARTMANFGFKNLILV--NPPELDEDAYRFSKHARY---IIENAEILNNFEELRR 76

Query: 205 WGFQTIGLSSDSKKPLEQ---------------EIKNDKIALILGAEGKGLRPKTQETAT 249
                +  S  S K  ++                  +  I ++ G E  GL  +  E   
Sbjct: 77  SLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFSGNIGIVFGRENYGLYNEEIEKCD 136

Query: 250 SMAHLH-------MPGIIKALNVSNAAAVALYI 275
           S+  +        M       N+++AAA+ LY 
Sbjct: 137 SLITIPTSEEYPIM-------NITHAAAIILYE 162


>gi|116629974|ref|YP_815146.1| rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC 33323]
 gi|116095556|gb|ABJ60708.1| Predicted rRNA methylase (SpoU class) [Lactobacillus gasseri ATCC
           33323]
          Length = 209

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +      +L
Sbjct: 29  VVLYEPLMPANTGNIARTCAGTNTILDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDDL 88

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPK-TQETATSM 251
              L+ +     +   +S  S K   Q    D       + G E  GL     +E     
Sbjct: 89  DAFLKTL-GPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYYDRN 147

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I+  N+SN+ A+ L      
Sbjct: 148 LRIPMSDNIRCYNLSNSVAMVLLEALRQ 175


>gi|238853588|ref|ZP_04643958.1| CspR [Lactobacillus gasseri 202-4]
 gi|311110393|ref|ZP_07711790.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22]
 gi|313471788|sp|Q042B4|TRML_LACGA RecName: Full=Putative tRNA
           (cytidine/uridine-2'-O-)-methyltransferase LGAS_1346
 gi|238833806|gb|EEQ26073.1| CspR [Lactobacillus gasseri 202-4]
 gi|311065547|gb|EFQ45887.1| RNA methyltransferase, TrmH family [Lactobacillus gasseri MV-22]
          Length = 185

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 5/148 (3%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+    +    +        ++  + ++     + +      +L
Sbjct: 5   VVLYEPLMPANTGNIARTCAGTNTILDLIEPLGFQIDNKKMKRAGLDYWDKVDIRMHDDL 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLRPK-TQETATSM 251
              L+ +     +   +S  S K   Q    D       + G E  GL     +E     
Sbjct: 65  DAFLKTL-GPNDEMYLISKFSSKNYAQVDYTDPNKDYYFVFGKETTGLPETFMREYYDRN 123

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             + M   I+  N+SN+ A+ L      
Sbjct: 124 LRIPMSDNIRCYNLSNSVAMVLLEALRQ 151


>gi|261403375|ref|YP_003247599.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           vulcanius M7]
 gi|261370368|gb|ACX73117.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           vulcanius M7]
          Length = 227

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 30/151 (19%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA-SGALEHIPYIRISNLTDALQK-M 202
            N+G+I R  + F        +        +L K A   A+     +  +   D  ++ +
Sbjct: 13  GNVGSIARVMMNFDFK-----ELRIVGSKEILNKEAYMMAVHAKDILNNAKFYDTFEEAI 67

Query: 203 HSWGFQTIGLSS--DSKKPLEQEIKNDK------------IALILGAEGKGLRPKTQETA 248
               F  I  S      + L++     K            + ++ G E  GL  +  E  
Sbjct: 68  KDLDF-VIATSGARGGDRNLKRVPITPKELALQLLEIEGNVGIVFGREDDGLTNEELEKC 126

Query: 249 TSMAHLHMPGIIKAL----NVSNAAAVALYI 275
             +  +        L    N+S+A AV LY 
Sbjct: 127 DLLVSIPTSN----LYPIMNLSHAVAVILYE 153


>gi|218508182|ref|ZP_03506060.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli Brasil
           5]
          Length = 227

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 21/154 (13%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIG + R+   F    +          +     +AS A   I   R+  
Sbjct: 16  VIILVEPQMGENIGMVARAMANFGLVDLRLVNPRDGWPNEKAQAAASKADHVIAGTRVYD 75

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL--------------EQEIKNDKIALILGAEGKG 239
            L  A+  ++         ++ S+                  +    +   ++ G E  G
Sbjct: 76  TLEQAIADLN----FVYATTARSRDNYKPVRSPVFAAETLRTKFRGGEATGILFGRERWG 131

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L  +    A  +    +     +LN++ A  V L
Sbjct: 132 LTNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|308235365|ref|ZP_07666102.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
           vaginalis ATCC 14018]
 gi|311115095|ref|YP_003986316.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
 gi|310946589|gb|ADP39293.1| TrmH family RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 227

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +        +   L ++     +    +   N  + ++ M 
Sbjct: 83  PGNTGSAIRLCAVTGTILHLVEPLGFNLQDTKLRRAGLDYHDMAHVVMHPNFENLVESMP 142

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
           +   + I  ++++ K            L+ G E G          G  P   E       
Sbjct: 143 NS--RIIAFTANATKLYTDIEYKPNDILLFGPEPGDIPDPMDIMAG--PHVAEQ----VR 194

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 195 LPMRPSLRSLNLTNCASIAIYEAWRQLG 222


>gi|222148422|ref|YP_002549379.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
 gi|221735410|gb|ACM36373.1| tRNA/rRNA methyltransferase [Agrobacterium vitis S4]
          Length = 286

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 13/139 (9%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKM-- 202
           NIG + R+   F    +          S     +AS A   I   +    L +AL  +  
Sbjct: 27  NIGMVARAMANFGLAELRLVNPRDGWPSEKARSAASKADHVIDGAKLYDTLEEALADLNF 86

Query: 203 -------HSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                      F+ +     +   L  + +  +K  ++ G E  GL+ +    A  +   
Sbjct: 87  VYATTARQRDNFKPVASPVTAASTLRTRFLAGEKTGILFGREKSGLKNEDVALADEIVTF 146

Query: 255 HMPGIIKALNVSNAAAVAL 273
            +     +LN++ A  V L
Sbjct: 147 PVNPAFASLNIAQA--VLL 163


>gi|170727353|ref|YP_001761379.1| tRNA/rRNA methyltransferase SpoU [Shewanella woodyi ATCC 51908]
 gi|169812700|gb|ACA87284.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella woodyi ATCC 51908]
          Length = 177

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 25/155 (16%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRY--------SPSESAVLAKSASGALEHIPY 189
           L +   P N+G I+R+A  +  D ++ T +         +   +    ++      HIP 
Sbjct: 13  LVNPKSPTNVGGIMRAAGCYQADAVLYTGKRYELAARNGNAQYNTDTKRAGQ----HIPL 68

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQET 247
             + +L  A         + + +        L + +  DK   + G E  G +  +  + 
Sbjct: 69  QAVESLLAA----KVDDVKLVCVDLVVGAISLPEFVHPDKALYVFGPE-DGTIGQEIIDK 123

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A ++ ++   G +   N++ +  V LY   +  AK
Sbjct: 124 ADAVVYVPTVGCM---NLAASVNVLLY---DRLAK 152


>gi|260772959|ref|ZP_05881875.1| rRNA methylase [Vibrio metschnikovii CIP 69.14]
 gi|260612098|gb|EEX37301.1| rRNA methylase [Vibrio metschnikovii CIP 69.14]
          Length = 178

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 10/152 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            + +++ L +   P N+G +LR+A  +  D I  T       +  L          IP +
Sbjct: 4   ETSVIIGLCNPKSPTNVGGVLRAAGCYQADAIRYTGTRYD-RAVKLQTDTKNRQNSIPLM 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
            ++ +TD L    +     + L+ +   PL + +   +   + G E   +       A  
Sbjct: 63  AVTEITDNLPS--ATKIVCVELA-EGATPLPEFVHPPQALYVFGPEDGSIPQAIINQADE 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++ +  V LY   +  AK
Sbjct: 120 VVYVPTVGCM---NLAASVNVLLY---DRLAK 145


>gi|92118708|ref|YP_578437.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter hamburgensis X14]
 gi|91801602|gb|ABE63977.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter hamburgensis X14]
          Length = 156

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 30/93 (32%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR       +  I      P       ++    L+ +  +R  +     Q   
Sbjct: 11  PQNTGTILRLCACLDVEAHIIEPAGFPVSDRHFRRAGMDYLDQVAIVRHDSWPKFQQWRA 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
           + G + +  ++    P       D   L+ G E
Sbjct: 71  ANGGRLVLFTTRGALPYLDHRYADTDILLFGRE 103


>gi|254168566|ref|ZP_04875409.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
 gi|197622400|gb|EDY34972.1| RNA methyltransferase, TrmH family, group 1 [Aciduliprofundum
           boonei T469]
          Length = 243

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 34/153 (22%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG + R+   F    +I      P       + +  A      I  + + +  +++  
Sbjct: 22  GNIGFLARTMANFGFKNLILV--NPPELDEDAYRFSKHARY---IIENAEILNNFEELRR 76

Query: 205 WGFQTIGLSSDSKKPLEQ---------------EIKNDKIALILGAEGKGLRPKTQETAT 249
                +  S  S K  ++                  +  I ++ G E  GL  +  E   
Sbjct: 77  SLDYLVATSGVSTKSPKKFKRIALTPREFAQKVWNFSGNIGIVFGRENYGLYNEEIEKCD 136

Query: 250 SMAHLH-------MPGIIKALNVSNAAAVALYI 275
           S+  +        M       N+++AAA+ LY 
Sbjct: 137 SLITIPTSEEYPIM-------NITHAAAIILYE 162


>gi|291616207|ref|YP_003518949.1| LasT [Pantoea ananatis LMG 20103]
 gi|291151237|gb|ADD75821.1| LasT [Pantoea ananatis LMG 20103]
          Length = 247

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 20/146 (13%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           NIGA  R+      + +         +     + A GA + +  I+    L +AL  +  
Sbjct: 30  NIGAAARAMKTMGFNEMRIV-ASDAWQDPAARRVAHGAGDILDRIKTFDTLAEALADI-- 86

Query: 205 WGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRPKTQETATSM 251
             F     +    +                       +AL+ G E  GL  +  E    +
Sbjct: 87  -DFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEELEQVDLL 145

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M     +LN+  A  V +Y  Q
Sbjct: 146 TGIPMANDYPSLNLGQA--VMVYCYQ 169


>gi|310288141|ref|YP_003939400.1| rRNA methyltransferase SpoU family [Bifidobacterium bifidum S17]
 gi|309252078|gb|ADO53826.1| rRNA methyltransferase SpoU family [Bifidobacterium bifidum S17]
          Length = 294

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 208 QTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + I L       P+E     ++  ++ GAEG GL  K  E A  + ++   G ++++N
Sbjct: 220 RIIALDIIPGAVPMETYRFPERCLMLFGAEGPGLSNKALELADDVVYISQFGSVRSIN 277



 Score = 38.9 bits (90), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF+ + +               K + 
Sbjct: 74  IRDDLDAAGRHGFEVAIENWTHDFNIGSMVRTANAFTANRVHI-----VGPHKWNRKGSL 128

Query: 182 GALEHIPYIRISNLTDALQ--KMHSWG 206
               +       ++ + +   K+   G
Sbjct: 129 MTELYQHVEYHPSIDELVTCWKLRIAG 155


>gi|224283598|ref|ZP_03646920.1| hypothetical protein BbifN4_07177 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140749|ref|ZP_07802942.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133259|gb|EFR50876.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 294

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 208 QTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + I L       P+E     ++  ++ GAEG GL  K  E A  + ++   G ++++N
Sbjct: 220 RIIALDIIPGAVPMETYRFPERCLMLFGAEGPGLSNKALELADDVVYISQFGSVRSIN 277



 Score = 38.9 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF+ + +               K + 
Sbjct: 74  IRDDLDAAGRHGFEVAIENWTHDFNIGSMVRTANAFTANRVHI-----VGPHKWNRKGSL 128

Query: 182 GALEHIPYIRISNLTDALQ--KMHSWG 206
               +       ++ + +   K+   G
Sbjct: 129 MTELYQHVEYHPSIDELVTCWKLRIAG 155


>gi|311065013|ref|YP_003971739.1| 23S rRNA methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310867333|gb|ADP36702.1| 23S rRNA methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 294

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 208 QTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           + I L       P+E     ++  ++ GAEG GL  K  E A  + ++   G ++++N
Sbjct: 220 RIIALDIIPGAVPMETYRFPERCLMLFGAEGPGLSNKALELADDVVYISQFGSVRSIN 277



 Score = 38.9 bits (90), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           +   LDA       + +++     NIG+++R+A AF+ + +               K + 
Sbjct: 74  IRDDLDAAGRHGFEVAIENWTHDFNIGSMVRTANAFTANRVHI-----VGPHKWNRKGSL 128

Query: 182 GALEHIPYIRISNLTDALQ--KMHSWG 206
               +       ++ + +   K+   G
Sbjct: 129 MTELYQHVEYHPSIDELVTCWKLRIAG 155


>gi|86357930|ref|YP_469822.1| tRNA/rRNA methyltransferase protein [Rhizobium etli CFN 42]
 gi|86282032|gb|ABC91095.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
           42]
          Length = 276

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 21/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L       NIG + R+   F    +          +     +AS A   I   ++   
Sbjct: 17  IILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKAQATASKADHVIEGTKVYDT 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPL--------------EQEIKNDKIALILGAEGKGL 240
           L  A+  ++         ++ S+                  +    +   ++ G E  GL
Sbjct: 77  LEQAIADLN----FVYATTARSRDNYKPVRSPVFAAQTLRTRFRAGEATGILFGRERWGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +    A  +    +     +LN++ A  V L
Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|126729831|ref|ZP_01745644.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
           E-37]
 gi|126709950|gb|EBA09003.1| RNA methyltransferase, TrmH family, group 1 [Sagittula stellata
           E-37]
          Length = 249

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 58/160 (36%), Gaps = 23/160 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL       NIGA  R+   F  D +          +      ASGA   +   + ++ 
Sbjct: 10  IVLVRPQMGENIGAAARAMWNFGLDRMRVVGPRDGWPNPKAVAMASGAGRLLDEAQHTDT 69

Query: 195 LTDALQKMHSWGFQTIGLSSDSK---KPLEQ-----------EIKNDKIALILGAEGKGL 240
           L DAL   H      +  ++ S+   K + +                ++A++ G E  GL
Sbjct: 70  LADALSDCH----FVLATTARSRDLTKTVYEPREAMAEAARRIAAGQRVAVMFGPERAGL 125

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
             +    A ++  + +     +LN++    V L  Y  Q 
Sbjct: 126 ENEDVAQANAIVTVPVNPEFYSLNLAQC--VLLMSYEWQR 163


>gi|37676836|ref|NP_937232.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37201380|dbj|BAC97202.1| predicted rRNA methylase [Vibrio vulnificus YJ016]
          Length = 173

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 59/153 (38%), Gaps = 12/153 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              +++ L +   P N+GA++R+A  ++   +        S +A        + E I  +
Sbjct: 4   EPTVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRY-SRAARFQTDTQNSHERIDLL 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + +LT +L        + + +        L   +  +K   + G E   L  +  + A 
Sbjct: 63  EMEDLTASLD----GDVEIVCVELVVGATALPHFVHPEKAIYLFGPEDGSLPQEVVDKAH 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + ++   G +   N++    V +Y   +  AK
Sbjct: 119 HVVYIPTHGCM---NLAATVNVVMY---DRLAK 145


>gi|195377529|ref|XP_002047541.1| GJ13500 [Drosophila virilis]
 gi|194154699|gb|EDW69883.1| GJ13500 [Drosophila virilis]
          Length = 354

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 31/144 (21%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA---LQKMHSWGFQTIGLSSDSKK 218
           ++ T        +   +   G    +P             +    +         ++ KK
Sbjct: 212 VVVTHGCCDPWESKALRGGCGGQFRLPIHDDVTWEQLPLHIPPEVADHCHVFIAENNPKK 271

Query: 219 PLEQEIKNDKIA-------------LILGAEGKGLRPKT---------QETATSMAHLHM 256
           P   E                    LI+G E  G+             +       ++ +
Sbjct: 272 P---ENLAGNTVDYAEVGQTGVHNILIIGGESHGVSEDAYKFMQLVGSRGKC---VYIPL 325

Query: 257 PGIIKALNVSNAAAVALYITQNHF 280
              + +LNV +A  + L+  +   
Sbjct: 326 AAGMDSLNVVSALTLILFELRKKL 349


>gi|48477401|ref|YP_023107.1| rRNA methylase [Picrophilus torridus DSM 9790]
 gi|48430049|gb|AAT42914.1| rRNA methylase [Picrophilus torridus DSM 9790]
          Length = 235

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 47/153 (30%), Gaps = 36/153 (23%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMH 203
            NIGA+ RS        +   K           + A   L  +   RI N   DA+    
Sbjct: 18  GNIGAVARSMANSGLTDLRIVK---TPIDEDARRRAMHGLYILDNARIYNSFDDAV---- 70

Query: 204 SWGFQTIGLSSDSKKP------------LEQEIKN---DKIALILGAEGKGLRPKTQETA 248
             GF  I  +SD  K                +       ++AL+ G E  GL        
Sbjct: 71  -SGFDIIAGTSDVSKSGNKFSRVPVSPEYFWDNYGLNGKRVALVFGREDNGLNNYELSKC 129

Query: 249 TSMAHL------HMPGIIKALNVSNAAAVALYI 275
                +       +       N+S+A A+ LY 
Sbjct: 130 NFFIKIIGNPEYPVY------NLSHAVAIILYE 156


>gi|110642697|ref|YP_670427.1| tRNA/rRNA methyltransferase YfhQ [Escherichia coli 536]
 gi|191172639|ref|ZP_03034178.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|300998261|ref|ZP_07181949.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|123147823|sp|Q0TEV3|TRMJ_ECOL5 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|110344289|gb|ABG70526.1| hypothetical tRNA/rRNA methyltransferase YfhQ [Escherichia coli
           536]
 gi|190907112|gb|EDV66712.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|300304033|gb|EFJ58553.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|324011236|gb|EGB80455.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           60-1]
          Length = 246

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPILDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|239917979|ref|YP_002957537.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665]
 gi|239839186|gb|ACS30983.1| rRNA methylase, putative, group 2 [Micrococcus luteus NCTC 2665]
          Length = 186

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKM 202
           P N G  +R A     +  +        E A L ++    L++     ++ +        
Sbjct: 37  PGNTGNAIRLAALTGAELHLVEPLGFGFEDAHLRRA---GLDYHDLAVVTVHPDLDAALA 93

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGII 260
                + +  ++      ++        L+ G E  GL  +       T    L M    
Sbjct: 94  ALAPARVLAFTARGSVRHDRVAYRPGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPAR 153

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN++NA ++A+Y     
Sbjct: 154 RSLNLANAVSIAVYEAWRQ 172


>gi|108758130|ref|YP_630275.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108462010|gb|ABF87195.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 167

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 3/149 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
             L +VL     P N G + R      C  I+        +   L ++     + +    
Sbjct: 7   RPLHLVLVSPQIPPNTGNVARLCAVTGCRLILVEPLGFSIDDRQLKRAGLDYWDKVFLRL 66

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                                S+ ++  L +    +   L+ G+E  GL P+  E  T  
Sbjct: 67  YPTYAAYAADYPDARRWLF--SARAETSLYEARFEEGDHLVFGSEVSGLAPEVMEGGTGT 124

Query: 252 -AHLHMPGIIKALNVSNAAAVALYITQNH 279
              + M    ++LN+S +  +  Y     
Sbjct: 125 AVTIPMLEDRRSLNLSTSVGIGTYEALRQ 153


>gi|254513994|ref|ZP_05126055.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
 gi|219676237|gb|EED32602.1| RNA methyltransferase TrmH, group 1 [gamma proteobacterium NOR5-3]
          Length = 254

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 19/155 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   + P NIGA+ R+        ++        E     ++   A+     +  + +
Sbjct: 8   IVLVEPSHPGNIGAVARAMKTMGLSRLVL----VAPEQFPDQQATWRAVWANDVLESATV 63

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKNDK-------------IALILGAEGKGLR 241
              L + +   GF  +G  +  ++     +   +             +A++ G E  GL 
Sbjct: 64  VATLDEAIADCGF-VVGTCARDRRLPWPVLDPRRAASEMAAKSRQGEVAILFGREDNGLS 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                       +       +LN++ A  +  Y  
Sbjct: 123 NDELMRCNLHLAIPTSEAYNSLNLAMAVQIVCYEL 157


>gi|225351757|ref|ZP_03742780.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158101|gb|EEG71384.1| hypothetical protein BIFPSEUDO_03354 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 221

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 77  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFENLVESMP 136

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
           +   + I  ++ + K            L+ G E G          G  P   E       
Sbjct: 137 NS--RIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPMDIMAG--PHVAEQ----VR 188

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 189 LPMRPSLRSLNLTNCASIAIYEAWRQLG 216


>gi|90408176|ref|ZP_01216344.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3]
 gi|90310706|gb|EAS38823.1| 23S rRNA methyltransferase [Psychromonas sp. CNPT3]
          Length = 173

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 22/160 (13%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKS-ASGAL 184
           +   Q+++ L +     N+GA LR+A  +  D +I T      +   +    K  +  AL
Sbjct: 1   MHQKQVIIGLSNPKSASNVGATLRAAGCYGVDKVIYTGTRYDRAVKLNTDTKKMKSQIAL 60

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRP 242
             + +         L +      + I +   +   PL      D    + G E  G L  
Sbjct: 61  LGVSH---------LLENKEAQTKVICVDLIEGAIPLPNFEHPDNALYLFGPE-DGTLSQ 110

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              ++A ++ ++   G +   N++    V LY   +  AK
Sbjct: 111 SLIDSADAVVYIPTQGCM---NLAATVNVVLY---DRLAK 144


>gi|207722898|ref|YP_002253332.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588082|emb|CAQ18662.1| trna/rrna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 287

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 27/185 (14%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY------ 168
           A ETAP     +   R ++   VL   + P N+G+   +A A    G      Y      
Sbjct: 7   ASETAPARDNNVLRQRAARCRFVLVETSHPGNVGS---TARALKTMGFGEPGGYVLVRPR 63

Query: 169 --SPSESAVLAKSASGALEHIPYIRI-SNLTDALQ----------KMHSWGFQTIG---L 212
                        ASGA + +   R+  ++ +AL           +   +G + IG   +
Sbjct: 64  EPDAQSHPDAVAMASGADDVLAGARVVDDIGEALAGAALTIALTARPREFGPRRIGPRVV 123

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           + +    L        +A + G E  GL     E    + H+       +LN+S A  + 
Sbjct: 124 AEEVAALLASPDAT--VAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLI 181

Query: 273 LYITQ 277
            Y  +
Sbjct: 182 AYEVR 186


>gi|261820557|ref|YP_003258663.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
 gi|261604570|gb|ACX87056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
          Length = 241

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVKPDSQAIALAAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D+L +        +G S+ S+                 QE ++  +AL+ G E  GL  
Sbjct: 63  VDSLDQALEGCSLVVGTSARSRTLPWPMLDPRECGVRSAQEAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157


>gi|300717963|ref|YP_003742766.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
 gi|299063799|emb|CAX60919.1| tRNA/rRNA methyltransferase [Erwinia billingiae Eb661]
          Length = 242

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 17/160 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVKPDSQAIALAAGAS----DVIGEAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRSLPWPMLDPRECGIKSVQEGQQAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +  +       +       +LN++ A  +  Y  +  F +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVRMAFLQ 162


>gi|163750174|ref|ZP_02157416.1| RNA methyltransferase, TrmH family, putative [Shewanella benthica
           KT99]
 gi|161330030|gb|EDQ01014.1| RNA methyltransferase, TrmH family, putative [Shewanella benthica
           KT99]
          Length = 183

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 127 DAVRNSQLLMV-LDHVNDPHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKS-AS 181
           D+V  + L+ + L +   P N+G ++R+A  +  + I+ T +    +         +   
Sbjct: 6   DSVDRTSLVKIGLVNPKSPTNVGGVMRAAGCYQANEILYTGKRYALAAKHRGEQYNTDTK 65

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG- 239
            A +HIP     +L  A     + G + + +   +   PL + +  DK   + G E  G 
Sbjct: 66  RAGQHIPLTATDDLLSA----RTDGVKLVCVDLVEGAIPLPEFVHPDKAIYVFGPE-DGT 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +     + A ++ ++   G +   N++++  V LY   +  AK
Sbjct: 121 IEQALIDAADAVVYVPTIGCM---NLASSVNVLLY---DRLAK 157


>gi|77457622|ref|YP_347127.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas fluorescens Pf0-1]
 gi|77381625|gb|ABA73138.1| putative RNA methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 178

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 15/143 (10%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +   P N+G+++R+A  +    +       +R +   +             IP I I 
Sbjct: 33  LYNPKSPENVGSVMRAAGCYGVSTVFYTGKRYERAADFVTDTKR-----VHYDIPLIGID 87

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           +L   L               D  +PL +    D+   I G E   L  + ++    + +
Sbjct: 88  DLKKILPL---NCVPVAVELVDGARPLPEYTHPDRALYIFGPEDGSLDQEIRDWCEDVVY 144

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           +   G +   N++    V LY  
Sbjct: 145 IPTTGCM---NLAATVNVVLYDR 164


>gi|238796769|ref|ZP_04640275.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           mollaretii ATCC 43969]
 gi|238719500|gb|EEQ11310.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           mollaretii ATCC 43969]
          Length = 257

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +       +       +LN++ A  +  Y  +  F
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAF 160


>gi|40063429|gb|AAR38240.1| RNA methyltransferase, TrmH family, group 1 [uncultured marine
           bacterium 580]
          Length = 248

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 17/163 (10%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           Q  +VL   + P NIG+  R+        +          +   A +A           +
Sbjct: 10  QFKIVLCRTSHPGNIGSSARAIKTMGFTHLTLVNPKQFPHAEANALAAGAEDILANATIV 69

Query: 193 SNLTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKG 239
           S + DAL+  H      IG ++             +    L+ E  + KIAL+ G E  G
Sbjct: 70  STIEDALKDSH----LIIGFTARQRELSQEHKNIREIASKLKSESHSKKIALLFGNETNG 125

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           L     +    + +++      +LN++ A  +  Y  +   ++
Sbjct: 126 LSNDEVKHCHMLGYINSNTKYSSLNLAQAIQIICYEIRMQLSE 168


>gi|170019185|ref|YP_001724139.1| RNA methyltransferase [Escherichia coli ATCC 8739]
 gi|312973224|ref|ZP_07787396.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1827-70]
 gi|169754113|gb|ACA76812.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
           8739]
 gi|310331819|gb|EFP99054.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1827-70]
 gi|323941206|gb|EGB37391.1| RNA methyltransferase [Escherichia coli E482]
          Length = 246

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|207743497|ref|YP_002259889.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
 gi|206594895|emb|CAQ61822.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
           IPO1609]
          Length = 287

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 27/185 (14%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY------ 168
           A ETAP     +   R ++   VL   + P N+G+   +A A    G      Y      
Sbjct: 7   ASETAPARDNNVLRQRAARCRFVLVETSHPGNVGS---TARALKTMGFGEPGGYVLVRPR 63

Query: 169 --SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS------------- 213
                        ASGA + +   R+ +  D  + +          +             
Sbjct: 64  EPDAQSHPDAVAMASGADDVLASARVVD--DIGEALAGAALTIALTARPREFGPRRIGPR 121

Query: 214 -SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +  +        +  +A + G E  GL     E    + H+       +LN+S A  + 
Sbjct: 122 VAAEEVAALLASPDATVAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLI 181

Query: 273 LYITQ 277
            Y  +
Sbjct: 182 AYEVR 186


>gi|17545880|ref|NP_519282.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17428175|emb|CAD14863.1| putative trna/rrna methyltransferase protein [Ralstonia
           solanacearum GMI1000]
          Length = 287

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 27/185 (14%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS----- 169
           A ET+P     +   R ++   VL   + P N+G+   +A A    G   +  Y      
Sbjct: 7   ASETSPARDNDVLRQRAARCRFVLVETSHPGNVGS---TARALKTMGFCESGSYVLVRPR 63

Query: 170 ---PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS-----------SD 215
                        ASGA + +   R+ +  D  + +          +             
Sbjct: 64  EPGAQSHPDAVAMASGADDVLADARVVD--DVGEALAGASLVIALTARPREFGPRRIGPR 121

Query: 216 SKKPLEQEIKNDK---IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
           +       +       +A + G E  GL  +  E    + H+       +LN+S A  + 
Sbjct: 122 AAAQEVAALLAAPGATVAFVFGNERYGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLI 181

Query: 273 LYITQ 277
            Y  +
Sbjct: 182 AYEVR 186


>gi|300704468|ref|YP_003746071.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
 gi|299072132|emb|CBJ43464.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 287

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 27/185 (14%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY------ 168
           A ETAP     +   R ++   VL   + P N+G+   +A A    G      Y      
Sbjct: 7   ASETAPARDNNVLRQRAARCRFVLVETSHPGNVGS---TARALKTMGFGEPGGYVLVRPR 63

Query: 169 --SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS------------- 213
                        ASGA + +   R+ +  D  + +          +             
Sbjct: 64  EPDAQSHPDAVAMASGADDVLAGARVVD--DIGEALAGASLTIALTARPREFGPRRIGPR 121

Query: 214 -SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +  +        +  +A + G E  GL     E    + H+       +LN+S A  + 
Sbjct: 122 VAAEEVAALLASPDATVAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLI 181

Query: 273 LYITQ 277
            Y  +
Sbjct: 182 AYEVR 186


>gi|238750361|ref|ZP_04611862.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           rohdei ATCC 43380]
 gi|238711292|gb|EEQ03509.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           rohdei ATCC 43380]
          Length = 257

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCNLVVGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +       +       +LN++ A  +  Y  +  F
Sbjct: 123 EELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAF 160


>gi|212716243|ref|ZP_03324371.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660755|gb|EEB21330.1| hypothetical protein BIFCAT_01159 [Bifidobacterium catenulatum DSM
           16992]
          Length = 221

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 77  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFENLVESMP 136

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
           +   + I  ++ + K            L+ G E G          G  P   E       
Sbjct: 137 NS--RIIAFTAHATKLYTDIEYKPTDILLFGPEPGNIPDPMDIMAG--PHVAEQ----VR 188

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 189 LPMRPSLRSLNLTNCASIAIYEAWRQLG 216


>gi|322816532|gb|EFZ24804.1| hypothetical protein TCSYLVIO_9048 [Trypanosoma cruzi]
          Length = 469

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN--AAAVAL 273
            ++  + E  +  + ++LG E  GL            ++   G I +L  S   A A+AL
Sbjct: 128 GERRTDNEDCDGGVEIVLGME-NGLSENVVSQCDYCLYIPQYGSIGSL--SMISAMAIAL 184

Query: 274 YITQN 278
           +   +
Sbjct: 185 HSAAS 189



 Score = 36.2 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAI+R+A  F+C+ +I   R          + A G    I  +  S + DA  +   
Sbjct: 266 RNIGAIMRNANVFNCEQMIVLHRR-----KFNRRGALGTQHLIKTLFYSGVDDAQCQKSL 320

Query: 205 WGFQT 209
            G+  
Sbjct: 321 EGYTI 325


>gi|71654167|ref|XP_815708.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880783|gb|EAN93857.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 469

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN--AAAVAL 273
            ++  + E  +  + ++LG E  GL            ++   G I +L  S   A A+AL
Sbjct: 128 GERRTDNEDCDGGVEIVLGME-NGLSENVVSQCDYCLYIPQYGSIGSL--SMISAMAIAL 184

Query: 274 YITQN 278
           +   +
Sbjct: 185 HSAAS 189



 Score = 35.8 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAI+R+A  F+C+ +I   R          + A G    I  +  S + DA  +   
Sbjct: 266 RNIGAIMRNANVFNCEQMIVLHRR-----KFNRRGALGTQHLINTLFYSGVDDAQCQKSL 320

Query: 205 WGFQT 209
            G+  
Sbjct: 321 EGYTI 325


>gi|255084313|ref|XP_002508731.1| predicted protein [Micromonas sp. RCC299]
 gi|226524008|gb|ACO69989.1| predicted protein [Micromonas sp. RCC299]
          Length = 506

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 30/134 (22%)

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD------------S 216
           +P       + A  A + +          AL+ +    F  +  ++             +
Sbjct: 178 APPLCDEAYRFAC-AADWL-LADAKRCDTALEAISDCTF-VMATTARPRGNVPLVTARVA 234

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG---------------IIK 261
            + L +E K  K+A++ G E  GL  +    A +   +   G                  
Sbjct: 235 AEMLAKEAKRGKVAVLFGNERTGLTNEELAQAHACVAIPTAGQGTLCRRSLKYTGGTGPT 294

Query: 262 ALNVSNAAAVALYI 275
           +LN+S A  V  Y 
Sbjct: 295 SLNLSQAVGVLAYE 308


>gi|118431106|ref|NP_147324.2| hypothetical protein APE_0555.1 [Aeropyrum pernix K1]
 gi|116062431|dbj|BAA79523.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 243

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L +VL       N+G + R A  F  D I      +  E A   + A+ A   +   R+
Sbjct: 3   KLRIVLVETEGAVNLGFVARLAENFEADEIYLVSPRASLEEAK--RYAARAAWRLDAARV 60

Query: 193 -SNLTDALQKMHSWGFQTIGLSSD--SKKPLEQEIKN-----------DKIALILGAEGK 238
            SNL +AL+ + +     +  SS    +  L   +               +A++ G E  
Sbjct: 61  VSNLEEALRGVSAS----LCTSSHMSDRDALRAPLAPWEAAEVLAATPGTVAIVFGRESV 116

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL        +  + +       +LN+SNAAA+ LY  
Sbjct: 117 GLTRGEIALCSLYSSIPASPRYPSLNLSNAAAIYLYEV 154


>gi|332283456|ref|YP_004415367.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
 gi|330427409|gb|AEC18743.1| tRNA/rRNA methyltransferase [Pusillimonas sp. T7-7]
          Length = 257

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 27/155 (17%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRY--SPSESAVLAKSASGALEHIPYIR-ISNLTDALQ 200
           P N+GA  R+        +           E       ASGA + +  +R +  L +AL 
Sbjct: 18  PGNVGAAARAIKTMGFHDLCLVAPRFPDVLELPDAQSLASGATDVLASVRIVPTLEEALA 77

Query: 201 KMHSWGFQTIGLSSDSKKPLE------------------QEIKNDKIALILGAEGKGLRP 242
            +      T+  +  ++  +                   Q  ++ ++A++LG E  GL  
Sbjct: 78  PI------TLAFALTARARMLGPPACDIRKAAQVSCQHLQSTRHARVAIVLGTERSGLTN 131

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +       + H+       +LNVS A  +A +  +
Sbjct: 132 EDVALCQRICHIPANPEYSSLNVSQALQLAAWELR 166


>gi|154148507|ref|YP_001406799.1| RNA methyltransferase [Campylobacter hominis ATCC BAA-381]
 gi|153804516|gb|ABS51523.1| RNA methyltransferase, TrmH family [Campylobacter hominis ATCC
           BAA-381]
          Length = 161

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 1/145 (0%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P N GAI R  +  +    I        +   + ++     + +      +L
Sbjct: 4   IVLVHPQIPQNTGAIGRLCINANLKLHIVKPTIFSLDEKSVRRAGLDYWKKLNPTIWDSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM-AHL 254
            D +        +    ++ SK+            +  G E  GL     +        +
Sbjct: 64  DDFMAANGDKISRFWFSTTKSKRLYFTADFKKDDFIFFGGESTGLPMNFMQKNWQNAITI 123

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            M    ++LN++ +  +  Y     
Sbjct: 124 PMGNEGRSLNLAMSVGIVAYEAIRQ 148


>gi|301096946|ref|XP_002897569.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107029|gb|EEY65081.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 719

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI-TQNHF 280
           + L LG E +G+  +  +       +   G++++LNV  +  + L+  TQ   
Sbjct: 658 MVLALGREKEGIPVEVLQLVDVCVEIPQFGLVRSLNVHVSGPLVLWEYTQQQL 710


>gi|322505530|emb|CAM42983.2| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 672

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 43/147 (29%)

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  +   +  RY P +     K A+ A    P + + N  D  Q +           +D 
Sbjct: 144 FGEEAYFSPPRYPPFDHG---KIATVAPSESPLVALENFADRAQSVMRTRLPIAATQNDG 200

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQET----------------------------- 247
                         L++G E  G+R     T                             
Sbjct: 201 GIR-----------LVVGHENWGVRRSLLRTKDVTTPVPMTDPTCATAPAGISESKSAPV 249

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A  + ++   G   +LNV  +  +AL+
Sbjct: 250 ADMVVYIPQYGTTSSLNVVTSLGIALF 276



 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++ ++  D  N G ++RSA AF  D I    R   +    +     G+  + P + +
Sbjct: 431 GLSVLYENEYDQRNFGGLIRSANAFLVDYIFYVGRRKVNVVGAV-----GSHHYTPPVYL 485

Query: 193 SNLTDA 198
             L DA
Sbjct: 486 GALPDA 491


>gi|148264087|ref|YP_001230793.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146397587|gb|ABQ26220.1| RNA methyltransferase, TrmH family, group 1 [Geobacter
           uraniireducens Rf4]
          Length = 245

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 21/158 (13%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI- 192
           + +VL     P NIG + R+        +         +     K A  A + +   RI 
Sbjct: 7   IAIVLVGTQSPGNIGMVCRAMKNMGLTDLRLVNPCQV-DHPEALKFAVSARDLLDSARIF 65

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGK 238
           S+L +AL+                K    QEI                 ++AL+ G E  
Sbjct: 66  SSLEEALEDCE---ISVATTRRHGK--YRQEISTPEEIAARVNAQAGMHRVALVFGREDS 120

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           GL           + +       +LN++ A  +  Y  
Sbjct: 121 GLTTDEVAVCRWQSTIPTADDYGSLNLAQAVLIFCYEL 158


>gi|323967980|gb|EGB63392.1| RNA methyltransferase [Escherichia coli M863]
 gi|323977285|gb|EGB72371.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|324113026|gb|EGC07002.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325496435|gb|EGC94294.1| methyltransferase [Escherichia fergusonii ECD227]
 gi|327252240|gb|EGE63912.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli STEC_7v]
          Length = 246

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|306840340|ref|ZP_07473111.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
 gi|306289687|gb|EFM60879.1| RNA methyltransferase, TrmH family, group 1 [Brucella sp. BO2]
          Length = 253

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 13/141 (9%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKM 202
           P NIG + R+   F    +          S     +AS A   I   +   +L  A+  +
Sbjct: 2   PENIGMVARAMANFGLAELRLVNPREEFPSEKARAAASKADHVIDNAVVYGDLPSAIADL 61

Query: 203 H---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQETATSMA 252
           +           GF+ +  + ++   L +  K   K  ++ G E  GL  +    A  + 
Sbjct: 62  NFVYATTARERDGFKPVRSAIEAGNALRRRFKTGEKTGILFGRERFGLSNEEVGLADELV 121

Query: 253 HLHMPGIIKALNVSNAAAVAL 273
              +     +LN++ A  V L
Sbjct: 122 TFPVNPAFASLNIAQA--VLL 140


>gi|296114999|ref|ZP_06833643.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978461|gb|EFG85195.1| putative cysteinyl-tRNA synthetase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 258

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 49/152 (32%), Gaps = 11/152 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L       NIG   R+        +               ++ASGA   +    + +
Sbjct: 18  VIILVRPQMAENIGTTARAMANGGLFHMRLVAPRDGWPQERAWRAASGADRILESATVFD 77

Query: 195 LT-DALQKMH---------SWGFQTIGLSSDSKKPLEQEIKND-KIALILGAEGKGLRPK 243
              DA+  +H             + +  +      L    +   +  L+ G E  GL  +
Sbjct: 78  TVGDAVADLHHVFATCPRPRHIVKPVMTARGGAAELRAISRRGLRTGLLFGPERAGLDNE 137

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
               A ++    +     +LN++ A  +  Y 
Sbjct: 138 DMARADALIRYPLNPAFMSLNLAQAVMIMAYE 169


>gi|260596420|ref|YP_003208991.1| putative RNA methyltransferase [Cronobacter turicensis z3032]
 gi|260215597|emb|CBA27837.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Cronobacter
           turicensis z3032]
          Length = 239

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 20/148 (13%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISNLTDALQKM 202
           P N+GA  R+        +   +  +        + A GA + +    R   L  AL+ +
Sbjct: 24  PENVGAAARAMKTMGFTELRIVE-SAAHLDPAARRVAHGAGDILDNTKRYDTLAAALEDV 82

Query: 203 HSWGFQTIGLSSDSKKPLEQE-------IKNDK------IALILGAEGKGLRPKTQETAT 249
               F     +    K            +  +K       AL+ G E  GL  +    A 
Sbjct: 83  ---DFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPVTALVFGREDSGLTNEELALAD 139

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  + M     +LN+  A  V +Y  Q
Sbjct: 140 VLTGVPMVADYPSLNLGQA--VMVYCYQ 165


>gi|149019401|ref|ZP_01834763.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931271|gb|EDK82250.1| TrmH family RNA methyltransferase group 3 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 81

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 48  NLFLYGVHTVSAA-LNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVG 106
           N  +YGVH V+ A L N   K++     +        +        +     +++ ++  
Sbjct: 4   NDIVYGVHAVTEALLANTGNKLYLQEDLRGKNVEKVKELATEKKVSISWTSKKSLSEMT- 62

Query: 107 KEAVHQGLALET 118
           + AVHQG   E 
Sbjct: 63  EGAVHQGFVYEC 74


>gi|83748230|ref|ZP_00945256.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
 gi|83725071|gb|EAP72223.1| RRNA methylase, SpoU family [Ralstonia solanacearum UW551]
          Length = 326

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 27/185 (14%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY------ 168
           A ETAP     +   R ++   VL   + P N+G+   +A A    G      Y      
Sbjct: 46  ASETAPARDNNVLRQRAARCRFVLVETSHPGNVGS---TARALKTMGFGEPGGYVLVRPR 102

Query: 169 --SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS------------- 213
                        ASGA + +   R+ +  D  + +          +             
Sbjct: 103 EPDAQSHPDAVAMASGADDVLASARVVD--DIGEALAGAALTIALTARPREFGPRRIGPR 160

Query: 214 -SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
            +  +        +  +A + G E  GL     E    + H+       +LN+S A  + 
Sbjct: 161 VAAEEVAALLASPDATVAFVFGNERYGLPNDVVERCHIVTHIPANPAYASLNLSQAVQLI 220

Query: 273 LYITQ 277
            Y  +
Sbjct: 221 AYEVR 225


>gi|291615064|ref|YP_003525221.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
 gi|291585176|gb|ADE12834.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
           ES-1]
          Length = 186

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 26/170 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N G ++R          +        +   L ++     E+        L
Sbjct: 4   VILYQPEIPPNTGNVIRLCANTGAHLHLIRPLGFDLDDKNLRRAGLDYHEYASVRVYDTL 63

Query: 196 TDALQKM-------------HSWGFQT-----------IGLSSDSKKPLEQEIKNDKIAL 231
            + L  +                G                 ++    P  +       A 
Sbjct: 64  VECLDTLPLATALPHPNPPPGGEGTSVSLRELADTRRAFAFTTKGSHPFNEVRYQPGDAF 123

Query: 232 ILGAEGKGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + G E +GL  +            L M    ++LN+SN  AV +Y     
Sbjct: 124 LFGPESRGLPAEVLAAFVPERRLRLPMLPDNRSLNLSNTVAVTVYEAWRQ 173


>gi|257053717|ref|YP_003131550.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
           DSM 12940]
 gi|256692480|gb|ACV12817.1| RNA methyltransferase, TrmH family, group 1 [Halorhabdus utahensis
           DSM 12940]
          Length = 237

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 23/160 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRIS 193
           + V+D    P N+G I R+   F    +                 A  A + I P   + 
Sbjct: 5   VAVVDA-QTPGNVGTIARAMKNFGLSDLKLVDPPELDPDGEAYGYAGQARDDIMPSADVV 63

Query: 194 NLTDALQKMHSWGFQTIGLSS----DSKKPLEQEIKNDK------------IALILGAEG 237
              + +       + T+  ++    D+ K +       +            + L+ G E 
Sbjct: 64  TFEEIVN-----NYHTVATTAITNEDATKHVRYPFVTPRELGEELKGIDSDVCLVFGRED 118

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +       +  +        LN+  AA + LY  +
Sbjct: 119 VGLSNEELAEVDQICSIPASDDYPVLNLGQAATIVLYELR 158


>gi|253700177|ref|YP_003021366.1| RNA methyltransferase TrmH [Geobacter sp. M21]
 gi|251775027|gb|ACT17608.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M21]
          Length = 245

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 17/153 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG + R+        +         +     K A  A   +   RI ++
Sbjct: 9   VVLVGTQSPGNIGMVCRAMKNMGLSDLRLVNPCQV-DHLDAVKFAVSARNLLDSARIFTS 67

Query: 195 LTDALQKMHSWGFQTIGLSSDSK------------KPLEQEIKNDKIALILGAEGKGLRP 242
           L DAL       F         K            +         ++AL+ G E  GL  
Sbjct: 68  LEDALADCE---FSVATTRRHGKYRNEISTPAEIVERFSACAPASRLALVFGREDSGLTT 124

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                    + +       +LN+S A  +  Y 
Sbjct: 125 DEVALCRWQSTIETADEFGSLNLSQAVLIFCYE 157


>gi|169630781|ref|YP_001704430.1| tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus ATCC
           19977]
 gi|169242748|emb|CAM63776.1| Probable tRNA/rRNA methyltransferase SpoU [Mycobacterium abscessus]
          Length = 153

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 5/124 (4%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G  +R      C+  +    +  SE A + ++     +        NL+ A + +   
Sbjct: 14  NTGNAIRMVAGTGCELHLVQPLFDLSE-AKVRRAGLDYHDMASVTVHENLSAAWKTLKPQ 72

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKAL 263
             +    ++ +              L+ G E  GL  +       T    + +    ++L
Sbjct: 73  --RVYAFTAHASVTYTDIAYQPGDVLLFGPEPTGLDAEVLADPHITEKVRIPLLPGRRSL 130

Query: 264 NVSN 267
           N+SN
Sbjct: 131 NLSN 134


>gi|16130457|ref|NP_417027.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113861|ref|NP_708371.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
 gi|26248900|ref|NP_754940.1| putative tRNA/rRNA methyltransferase YfhQ [Escherichia coli CFT073]
 gi|30063922|ref|NP_838093.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
           2457T]
 gi|82544981|ref|YP_408928.1| ATP synthase beta subunit [Shigella boydii Sb227]
 gi|89109338|ref|AP_003118.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91211859|ref|YP_541845.1| putative ATP synthase subunit beta [Escherichia coli UTI89]
 gi|110806463|ref|YP_689983.1| putative ATP synthase subunit beta [Shigella flexneri 5 str. 8401]
 gi|117624760|ref|YP_853673.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|157162008|ref|YP_001459326.1| RNA methyltransferase [Escherichia coli HS]
 gi|170082142|ref|YP_001731462.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|170683683|ref|YP_001744721.1| RNA methyltransferase [Escherichia coli SMS-3-5]
 gi|187732283|ref|YP_001881323.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|188493660|ref|ZP_03000930.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|193064014|ref|ZP_03045099.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194427269|ref|ZP_03059819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|194437647|ref|ZP_03069743.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|215487882|ref|YP_002330313.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559458|ref|YP_002392371.1| methyltransferase [Escherichia coli S88]
 gi|218690652|ref|YP_002398864.1| putative methyltransferase [Escherichia coli ED1a]
 gi|218696159|ref|YP_002403826.1| putative methyltransferase [Escherichia coli 55989]
 gi|218706035|ref|YP_002413554.1| putative methyltransferase [Escherichia coli UMN026]
 gi|227887568|ref|ZP_04005373.1| possible methyltransferase [Escherichia coli 83972]
 gi|238901697|ref|YP_002927493.1| putative methyltransferase [Escherichia coli BW2952]
 gi|253772572|ref|YP_003035403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162506|ref|YP_003045614.1| putative methyltransferase [Escherichia coli B str. REL606]
 gi|256021783|ref|ZP_05435648.1| predicted methyltransferase [Escherichia sp. 4_1_40B]
 gi|260845162|ref|YP_003222940.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|293405973|ref|ZP_06649965.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|293410947|ref|ZP_06654523.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415800|ref|ZP_06658443.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|297517122|ref|ZP_06935508.1| putative methyltransferase [Escherichia coli OP50]
 gi|298381774|ref|ZP_06991373.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli FVEC1302]
 gi|300898358|ref|ZP_07116705.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300904291|ref|ZP_07122149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300920692|ref|ZP_07137100.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300930177|ref|ZP_07145595.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|300940214|ref|ZP_07154814.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300951756|ref|ZP_07165575.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300982032|ref|ZP_07175854.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|301022139|ref|ZP_07186062.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|301024815|ref|ZP_07188452.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|301047169|ref|ZP_07194262.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|301302891|ref|ZP_07209019.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|301648290|ref|ZP_07248031.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|306814398|ref|ZP_07448560.1| putative methyltransferase [Escherichia coli NC101]
 gi|307139167|ref|ZP_07498523.1| putative methyltransferase [Escherichia coli H736]
 gi|307313897|ref|ZP_07593513.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|312965450|ref|ZP_07779682.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 2362-75]
 gi|331643153|ref|ZP_08344288.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H736]
 gi|331648230|ref|ZP_08349320.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M605]
 gi|331653966|ref|ZP_08354967.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M718]
 gi|331658680|ref|ZP_08359624.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA206]
 gi|331664097|ref|ZP_08365007.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA143]
 gi|331673988|ref|ZP_08374751.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA280]
 gi|83287927|sp|P0AE02|TRMJ_ECOL6 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|83287928|sp|P0AE01|TRMJ_ECOLI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|83287929|sp|P0AE03|TRMJ_SHIFL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122422895|sp|Q1R8K0|TRMJ_ECOUT RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123342618|sp|Q0T1Y7|TRMJ_SHIF8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123558992|sp|Q31XV8|TRMJ_SHIBS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|166234835|sp|A1AE69|TRMJ_ECOK1 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|26109306|gb|AAN81508.1|AE016764_190 Hypothetical tRNA/rRNA methyltransferase yfhQ [Escherichia coli
           CFT073]
 gi|1788881|gb|AAC75585.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799940|dbj|BAA16426.1| predicted methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|24052955|gb|AAN44078.1| putative ATP synthase beta subunit [Shigella flexneri 2a str. 301]
 gi|30042178|gb|AAP17903.1| putative ATP synthase beta subunit [Shigella flexneri 2a str.
           2457T]
 gi|81246392|gb|ABB67100.1| putative ATP synthase beta subunit [Shigella boydii Sb227]
 gi|91073433|gb|ABE08314.1| putative ATP synthase beta subunit [Escherichia coli UTI89]
 gi|110616011|gb|ABF04678.1| putative ATP synthase beta subunit [Shigella flexneri 5 str. 8401]
 gi|115513884|gb|ABJ01959.1| putative methyltransferase [Escherichia coli APEC O1]
 gi|157067688|gb|ABV06943.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
 gi|169889977|gb|ACB03684.1| predicted methyltransferase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521401|gb|ACB19579.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           SMS-3-5]
 gi|187429275|gb|ACD08549.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|188488859|gb|EDU63962.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|192929249|gb|EDV82858.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194414590|gb|EDX30862.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|194423453|gb|EDX39444.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|215265954|emb|CAS10363.1| predicted methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218352891|emb|CAU98690.1| putative methyltransferase [Escherichia coli 55989]
 gi|218366227|emb|CAR03974.1| putative methyltransferase [Escherichia coli S88]
 gi|218428216|emb|CAR09131.2| putative methyltransferase [Escherichia coli ED1a]
 gi|218433132|emb|CAR14028.1| putative methyltransferase [Escherichia coli UMN026]
 gi|222034243|emb|CAP76984.1| Uncharacterized tRNA/rRNA methyltransferase yfhQ [Escherichia coli
           LF82]
 gi|227835918|gb|EEJ46384.1| possible methyltransferase [Escherichia coli 83972]
 gi|238862663|gb|ACR64661.1| predicted methyltransferase [Escherichia coli BW2952]
 gi|242378132|emb|CAQ32905.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323616|gb|ACT28218.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974407|gb|ACT40078.1| predicted methyltransferase [Escherichia coli B str. REL606]
 gi|253978574|gb|ACT44244.1| predicted methyltransferase [Escherichia coli BL21(DE3)]
 gi|257760309|dbj|BAI31806.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009]
 gi|260448388|gb|ACX38810.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
 gi|281601935|gb|ADA74919.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella
           flexneri 2002017]
 gi|291428181|gb|EFF01208.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|291433448|gb|EFF06427.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|291471415|gb|EFF13899.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491693|gb|ADE90449.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           IHE3034]
 gi|298279216|gb|EFI20730.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli FVEC1302]
 gi|299881340|gb|EFI89551.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|300300917|gb|EFJ57302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|300357970|gb|EFJ73840.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300396346|gb|EFJ79884.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|300403749|gb|EFJ87287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300408860|gb|EFJ92398.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|300412340|gb|EFJ95650.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300449040|gb|EFK12660.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300454970|gb|EFK18463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300461937|gb|EFK25430.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|300841826|gb|EFK69586.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|301073641|gb|EFK88447.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|305851792|gb|EFM52244.1| putative methyltransferase [Escherichia coli NC101]
 gi|306906398|gb|EFN36913.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|307554555|gb|ADN47330.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|307625913|gb|ADN70217.1| putative methyltransferase [Escherichia coli UM146]
 gi|309702864|emb|CBJ02195.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
 gi|312289870|gb|EFR17758.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 2362-75]
 gi|312947109|gb|ADR27936.1| putative methyltransferase [Escherichia coli O83:H1 str. NRG 857C]
 gi|313651021|gb|EFS15421.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 2a str. 2457T]
 gi|315061851|gb|ADT76178.1| predicted methyltransferase [Escherichia coli W]
 gi|315137156|dbj|BAJ44315.1| RNA methyltransferase [Escherichia coli DH1]
 gi|315256554|gb|EFU36522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           85-1]
 gi|315288055|gb|EFU47457.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           110-3]
 gi|315292492|gb|EFU51844.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           153-1]
 gi|315300495|gb|EFU59724.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           16-3]
 gi|315615793|gb|EFU96425.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 3431]
 gi|320175096|gb|EFW50209.1| tRNA:Cm32/Um32 methyltransferase [Shigella dysenteriae CDC 74-1112]
 gi|320186421|gb|EFW61151.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri CDC 796-83]
 gi|323170193|gb|EFZ55846.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli LT-68]
 gi|323188348|gb|EFZ73640.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli RN587/1]
 gi|323377568|gb|ADX49836.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
 gi|323936272|gb|EGB32563.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323949192|gb|EGB45083.1| RNA methyltransferase [Escherichia coli H252]
 gi|323955773|gb|EGB51531.1| RNA methyltransferase [Escherichia coli H263]
 gi|323961348|gb|EGB56960.1| RNA methyltransferase [Escherichia coli H489]
 gi|323971054|gb|EGB66302.1| RNA methyltransferase [Escherichia coli TA007]
 gi|324008496|gb|EGB77715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           57-2]
 gi|324118258|gb|EGC12154.1| RNA methyltransferase [Escherichia coli E1167]
 gi|330912308|gb|EGH40818.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli AA86]
 gi|331039951|gb|EGI12171.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H736]
 gi|331043090|gb|EGI15230.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M605]
 gi|331048815|gb|EGI20891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli M718]
 gi|331054345|gb|EGI26372.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA206]
 gi|331059896|gb|EGI31873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA143]
 gi|331069261|gb|EGI40653.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA280]
 gi|332092802|gb|EGI97871.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella boydii 3594-74]
 gi|332344407|gb|AEE57741.1| RNA methyltransferase [Escherichia coli UMNK88]
 gi|332754064|gb|EGJ84435.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 4343-70]
 gi|332754141|gb|EGJ84510.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-671]
 gi|332756262|gb|EGJ86613.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri 2747-71]
 gi|332765884|gb|EGJ96095.1| tRNA:Cm32/Um32 methyltransferase [Shigella flexneri 2930-71]
 gi|333000512|gb|EGK20091.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri VA-6]
 gi|333000896|gb|EGK20467.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-218]
 gi|333002330|gb|EGK21894.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-272]
 gi|333016153|gb|EGK35485.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-227]
 gi|333016404|gb|EGK35735.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella flexneri K-304]
          Length = 246

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|15803059|ref|NP_289089.1| putative ATP synthase beta subunit [Escherichia coli O157:H7
           EDL933]
 gi|15832652|ref|NP_311425.1| ATP synthase beta subunit [Escherichia coli O157:H7 str. Sakai]
 gi|74313058|ref|YP_311477.1| putative ATP synthase subunit beta [Shigella sonnei Ss046]
 gi|82777915|ref|YP_404264.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
 gi|157158953|ref|YP_001463855.1| RNA methyltransferase [Escherichia coli E24377A]
 gi|168748403|ref|ZP_02773425.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757811|ref|ZP_02782818.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761148|ref|ZP_02786155.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168768631|ref|ZP_02793638.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773547|ref|ZP_02798554.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778504|ref|ZP_02803511.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787884|ref|ZP_02812891.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|168798909|ref|ZP_02823916.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|191169250|ref|ZP_03031002.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|193068368|ref|ZP_03049331.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|195936678|ref|ZP_03082060.1| methyltransferase [Escherichia coli O157:H7 str. EC4024]
 gi|208808795|ref|ZP_03251132.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814295|ref|ZP_03255624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819499|ref|ZP_03259819.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397596|ref|YP_002272007.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920010|ref|YP_002294094.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217326776|ref|ZP_03442859.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555057|ref|YP_002387970.1| putative methyltransferase [Escherichia coli IAI1]
 gi|254794482|ref|YP_003079319.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017319|ref|ZP_05431184.1| predicted methyltransferase [Shigella sp. D9]
 gi|261223032|ref|ZP_05937313.1| predicted methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259417|ref|ZP_05951950.1| putative methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283757|ref|YP_003500575.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli O55:H7 str. CB9615]
 gi|293446886|ref|ZP_06663308.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|300817697|ref|ZP_07097912.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300820797|ref|ZP_07100947.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|300927098|ref|ZP_07142849.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|301330369|ref|ZP_07223016.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|309794420|ref|ZP_07688843.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|331669280|ref|ZP_08370128.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA271]
 gi|331678525|ref|ZP_08379200.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H591]
 gi|332278314|ref|ZP_08390727.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
           D9]
 gi|20178206|sp|Q8XA83|TRMJ_ECO57 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123561907|sp|Q32D32|TRMJ_SHIDS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123616509|sp|Q3YZ20|TRMJ_SHISS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|12516936|gb|AAG57646.1|AE005483_5 putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362869|dbj|BAB36821.1| putative ATP synthase beta subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|73856535|gb|AAZ89242.1| putative ATP synthase beta subunit [Shigella sonnei Ss046]
 gi|81242063|gb|ABB62773.1| putative ATP synthase beta subunit [Shigella dysenteriae Sd197]
 gi|157080983|gb|ABV20691.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E24377A]
 gi|187770559|gb|EDU34403.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017081|gb|EDU55203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003494|gb|EDU72480.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355295|gb|EDU73714.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362206|gb|EDU80625.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368377|gb|EDU86793.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372329|gb|EDU90745.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|189378640|gb|EDU97056.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|190900703|gb|EDV60500.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|192958320|gb|EDV88760.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|208728596|gb|EDZ78197.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735572|gb|EDZ84259.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739622|gb|EDZ87304.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158996|gb|ACI36429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209763218|gb|ACI79921.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763220|gb|ACI79922.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763222|gb|ACI79923.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763224|gb|ACI79924.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209763226|gb|ACI79925.1| putative ATP synthase beta subunit [Escherichia coli]
 gi|209913269|dbj|BAG78343.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|217319143|gb|EEC27568.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|218361825|emb|CAQ99423.1| putative methyltransferase [Escherichia coli IAI1]
 gi|254593882|gb|ACT73243.1| tRNA Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763630|gb|ADD57591.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           coli O55:H7 str. CB9615]
 gi|291323716|gb|EFE63144.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|300416917|gb|EFK00228.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|300526550|gb|EFK47619.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|300529685|gb|EFK50747.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300843703|gb|EFK71463.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|308121876|gb|EFO59138.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|320188871|gb|EFW63530.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320200096|gb|EFW74685.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli EC4100B]
 gi|320640881|gb|EFX10369.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H7 str. G5101]
 gi|320646323|gb|EFX15250.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H- str. 493-89]
 gi|320651503|gb|EFX19890.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H- str. H 2687]
 gi|320657214|gb|EFX25023.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320662820|gb|EFX30152.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320667624|gb|EFX34539.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Escherichia
           coli O157:H7 str. LSU-61]
 gi|323169391|gb|EFZ55067.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella sonnei 53G]
 gi|323944589|gb|EGB40657.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019987|gb|EGB89206.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           117-3]
 gi|326340336|gb|EGD64140.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           1125]
 gi|326345020|gb|EGD68764.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli O157:H7 str.
           1044]
 gi|331064474|gb|EGI36385.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli TA271]
 gi|331074985|gb|EGI46305.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H591]
 gi|332087983|gb|EGI93108.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella boydii 5216-82]
 gi|332100666|gb|EGJ04012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Shigella sp.
           D9]
          Length = 245

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|253689402|ref|YP_003018592.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755980|gb|ACT14056.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 241

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSKLYLVNPLVKPDSQAIALAAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D+  +        +G S+ S+                 QE ++  +AL+ G E  GL  
Sbjct: 63  VDSFDQALEGCGLVVGTSARSRTLPWPMLEPRECGVRSAQEAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVR 157


>gi|194432193|ref|ZP_03064482.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|194419722|gb|EDX35802.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|332089667|gb|EGI94768.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Shigella dysenteriae 155-74]
          Length = 245

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNIGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|313611174|gb|EFR85995.1| putative TrmH family tRNA/rRNA methyltransferase yacO [Listeria
           monocytogenes FSL F2-208]
          Length = 86

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 43  TSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALA---RLDWDANLPHPFPVKTVPPQ 99
             + E  ++ G + V   L +  R I ++   + +     +            V+ VP Q
Sbjct: 2   EQENEQEWIGGRNPVLEVLRSD-RDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQ 60

Query: 100 TIDKIVGKEAVHQG 113
            I+K+V     HQG
Sbjct: 61  KIEKVVS--GAHQG 72


>gi|123968694|ref|YP_001009552.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. AS9601]
 gi|123198804|gb|ABM70445.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           AS9601]
          Length = 250

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 54/162 (33%), Gaps = 23/162 (14%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S L ++L   N P N+G++ R    F  D +          S    K    AL+    + 
Sbjct: 8   SNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCDIFSLEAKKM---ALKGQKILE 64

Query: 192 ISNLTDALQKMHSWGF---QTIGLSSD----------SKKPLEQEIKN----DKIALILG 234
              + D    +    F     +               S + +     +    + +A+I G
Sbjct: 65  NCKIFD---DLQKAIFDCDLVLASCGRIDVNKDSFFVSSEDIFDWTLSFNKLNNLAIIFG 121

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            E +GL       A     +       +LN+S+A ++ LY  
Sbjct: 122 REDRGLTNSELLLANKTFSIPTSQNNPSLNLSHAVSIVLYEL 163


>gi|300958833|ref|ZP_07170944.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|300314518|gb|EFJ64302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
          Length = 246

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|293608356|ref|ZP_06690659.1| RNA methyltransferase [Acinetobacter sp. SH024]
 gi|292828929|gb|EFF87291.1| RNA methyltransferase [Acinetobacter sp. SH024]
          Length = 279

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 26/160 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYIR-IS 193
           +V+ +   P NIG+ LR+         ++   +  P     +   A+G+ +   ++  + 
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLIKLVLVAPKTYP--HPDIQALAAGSQDLFEHLEIVD 75

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKNDK-----------IALILGAEGKG 239
            L DA++  H       G S+ S+    PL       K           IA++ G E +G
Sbjct: 76  TLEDAIKDCH----LVFGTSARSRTIPWPLLDVRPAAKEAIKATSQGQQIAIVFGREDRG 131

Query: 240 LRPKTQETATSMAHLHMPG--IIKALNVSNAAAVALYITQ 277
           L  +    A     + +     +  LNV+ A  V  Y  +
Sbjct: 132 LTNEELALANYHLTIPVNPDYGV--LNVAQAIQVVCYELR 169


>gi|289705119|ref|ZP_06501523.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus
           luteus SK58]
 gi|289558147|gb|EFD51434.1| putative RNA methyltransferase, TrmH family, group 2 [Micrococcus
           luteus SK58]
          Length = 186

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 6/139 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKM 202
           P N G  +R A     +  +        E A L ++    L++     ++ +        
Sbjct: 37  PGNTGNAIRLAALTGAELHLVEPLGFGFEDAHLRRA---GLDYHDLAVVTVHPDLDAALA 93

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGII 260
                + +  ++      ++        L+ G E  GL  +       T    L M    
Sbjct: 94  ALAPARVLAFTARGSVRHDRVAYRSGDVLLFGRESTGLPEEVLADPRVTETVCLPMQPAR 153

Query: 261 KALNVSNAAAVALYITQNH 279
           ++LN++NA ++A+Y     
Sbjct: 154 RSLNLANAVSIAVYEAWRQ 172


>gi|219124567|ref|XP_002182572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405918|gb|EEC45859.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 289

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGI------ITTKRYSPSESAVLAKSASGA 183
           R     ++ ++  +P NI A LR+  +F    +         K  +        ++A G+
Sbjct: 143 RTGHTRLLFENPANPSNIWACLRTVDSFGIQHVDVVIQSGEYKGKAALSQKRGMRTAMGS 202

Query: 184 LEHIPYIRISNLTDALQKMH-SWGFQTIGLSSD-SKKPLEQEIK----NDKIAL 231
            + +      +  DA++ +      +      + + + +         +  I +
Sbjct: 203 AQWMTLRNHLSTADAVRTLKTQNNCRIFASDLNPNSRDIRTIDWSSYGDQPICI 256


>gi|331684182|ref|ZP_08384778.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H299]
 gi|320196373|gb|EFW70997.1| tRNA:Cm32/Um32 methyltransferase [Escherichia coli WV_060327]
 gi|331079134|gb|EGI50336.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Escherichia coli H299]
          Length = 246

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|281179586|dbj|BAI55916.1| putative RNA methyltransferase [Escherichia coli SE15]
          Length = 246

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|260869221|ref|YP_003235623.1| putative methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|257765577|dbj|BAI37072.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128]
 gi|323177343|gb|EFZ62931.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Escherichia coli 1180]
          Length = 245

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|218701042|ref|YP_002408671.1| putative methyltransferase [Escherichia coli IAI39]
 gi|218371028|emb|CAR18855.1| putative methyltransferase [Escherichia coli IAI39]
          Length = 246

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|71409670|ref|XP_807167.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70871110|gb|EAN85316.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 532

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 62/179 (34%), Gaps = 23/179 (12%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS--CDGIITTKRYSPSESAVLAK 178
           LL+   +   +S L + L+      N    +R+ + F         + + +    ++  +
Sbjct: 40  LLNGWPNRCLHSHLFVGLEGCTSAFNAMNSIRTCMHFGTTFPPFFLSLKRAEDIRSLHPR 99

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGF-------QTIGLSSDSKKPLEQEIKNDKI-- 229
             +G        R       + +     F       Q   ++ ++     + I + ++  
Sbjct: 100 CTAGKTNSEDLTRPGATLSQVARFGEDLFLDDPSFGQIPLVALENYTNRSESILSCRLSS 159

Query: 230 -A-LILGAEGKGLRPKTQETAT----------SMAHLHMPGIIKALNVSNAAAVALYIT 276
            A +++G E  G+  K  +              + ++   G I +LNV  +  +AL+  
Sbjct: 160 SARIVVGHENNGVSRKYIDKMDVSGGKGCRAERVVYVPQYGTISSLNVVTSMGIALFYA 218


>gi|297619714|ref|YP_003707819.1| TrmH family RNA methyltransferase [Methanococcus voltae A3]
 gi|297378691|gb|ADI36846.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus voltae
           A3]
          Length = 246

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 33/167 (19%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            ++L +     N+GAI R+ + F    +   +     E      +    +  +    I  
Sbjct: 4   TVILVNPKYSGNLGAIARTMMNFDTYDLRIVQNK-LGEKPETILNDEAFIRAVHAKEILE 62

Query: 195 LTDALQKMHSWGFQT---IGLSSD---SKKPLEQEIKNDK------------IALILGAE 236
                + +    +     +  +       K +++     +            +A++ G E
Sbjct: 63  NAKFYKTLEEASYDIDYLVATTGAVSIGDKNIKRVPMTPRELAEKSISLKGNLAIVFGRE 122

Query: 237 GKGLRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
             GLR +  E    +  +        M       N+S+A +V LY  
Sbjct: 123 DDGLRNEDVELCDLLVSIPTCSNYPIM-------NLSHAVSVILYEL 162


>gi|117621440|ref|YP_857524.1| putative RNA methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562847|gb|ABK39795.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 230

 Score = 50.4 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 13/153 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR- 191
           +L  VL     P N+GA  R+      D +         E    +  A GA E +     
Sbjct: 2   KLYFVLVAPARPANVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEVLTQAEA 60

Query: 192 ISNLTDALQKM--------HSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L +AL  M           G +Q     ++ +  ++ +   DK+A++ G E  GL  
Sbjct: 61  FDTLEEALADMDLVVATTARQRGRYQHYLTPAEIRDQIKAKPSLDKVAIVFGCEESGLSN 120

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +       +++L +     +LN+  A  + LY 
Sbjct: 121 EQLAQVDLISYLPLKVSYPSLNLGQA--IMLYA 151


>gi|52424221|ref|YP_087358.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306273|gb|AAU36773.1| CspR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 159

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 46/147 (31%), Gaps = 4/147 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L +S     E     +    
Sbjct: 4   IVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAHIKKHKTF 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
              L+       +   L++       +        L+ G E +G+     ++        
Sbjct: 64  EVFLESEKPK--RLFALTTKGGPAHSEVKFELGDYLMFGPETRGIPMAILDSMPMEQKIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHF 280
           + M    +++N+SN+ AV +Y      
Sbjct: 122 IPMTENSRSMNLSNSVAVTVYEAWRQL 148


>gi|218548031|ref|YP_002381822.1| methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218355572|emb|CAQ88184.1| putative methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 246

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAITANPEYSSLNLAMAVQVIAYEVR 157


>gi|260771409|ref|ZP_05880334.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
 gi|260613535|gb|EEX38729.1| tRNA:Cm32/Um32 methyltransferase [Vibrio furnissii CIP 102972]
          Length = 243

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLKQMVL----VDPQCEVDAQAIALAAGASDIALNAQI 62

Query: 196 TDALQ-KMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGL 240
            D L   +   G   +G S+ S+  LE  + +                +A++ G E  GL
Sbjct: 63  VDTLDSAIADCGL-VVGTSARSRT-LEWPMLDPRECGEKFAAEGEQHPVAIVFGRERTGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                +       +       +LN++ A     Y  +
Sbjct: 121 TNDELQKCHYHVSIPANPEYSSLNLAMAVQTLCYEIR 157


>gi|330446283|ref|ZP_08309935.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490474|dbj|GAA04432.1| spoU rRNA Methylase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 155

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 20/144 (13%)

Query: 144 PHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           P N+G+++R+A  +  + +  T     ++        K    A   IP I + +L D + 
Sbjct: 19  PENVGSVMRAAGCYGVNSVFYTGTRYDHAAQFCTDTKK----AALDIPLIGVEDLRDIIP 74

Query: 201 KMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPG 258
                G   + +   D  KPL +     +   I G E  G L+    +      ++   G
Sbjct: 75  V----GCVPVAVDLIDDAKPLPEYKHPKRAFYIFGPE-DGTLKKDITDFCRETIYVPTKG 129

Query: 259 IIKALNVSNAAAVALYITQNHFAK 282
            +   N++ A  V LY   +  AK
Sbjct: 130 CM---NLAAAVNVILY---DRLAK 147


>gi|146293543|ref|YP_001183967.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32]
 gi|145565233|gb|ABP76168.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens CN-32]
 gi|319426843|gb|ADV54917.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella putrefaciens 200]
          Length = 257

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKS-ASGALEHIPYIRISNLTDAL 199
           P N+G I+R++  +  DG+  T R    +    AV        A E IP   +++L  A+
Sbjct: 50  PVNVGGIMRASGCYGVDGVFYTGRRYELAARSGAVQYHVDTKDAGERIPLTGVTSLLAAI 109

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMP 257
                   Q I +       PL   +   K   + G E  G +  +  + A ++ ++   
Sbjct: 110 P----ADTQLICVDLVVGATPLPDFVHPVKAFYVFGPE-DGTIGQEIIDKADAVVYVPTV 164

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G +   N++ +  V LY   +  AK
Sbjct: 165 GCM---NLAASVNVLLY---DRLAK 183


>gi|310286958|ref|YP_003938216.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium
           bifidum S17]
 gi|309250894|gb|ADO52642.1| RNA methyltransferase, SpoU rRNA Methylase family [Bifidobacterium
           bifidum S17]
          Length = 215

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 71  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFNNLVESMP 130

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
               + I  ++ + K   +        L+ G E G          G  P   E       
Sbjct: 131 DS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIMAG--PHVAEQ----VR 182

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 183 LPMRPSLRSLNLTNCASIAIYEAWRQLG 210


>gi|224003205|ref|XP_002291274.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973050|gb|EED91381.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 167

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           S+D      Q   + ++AL+ G+E  G+     +T   M  +       +LN++ A
Sbjct: 90  STDDTNDRHQHSNSIRLALVFGSEKTGMTESDMDTCHVMLGIPTNPQFGSLNLAAA 145


>gi|167621090|ref|ZP_02389721.1| RNA methyltransferase, TrmH family, group 1 [Burkholderia
           thailandensis Bt4]
          Length = 174

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           Q+++   IA + G E  GL  +  E  +++AH+       +LN++ A  V  Y  +
Sbjct: 1   QQVRTGDIAFVFGNERTGLSNEHVERCSAIAHIPANPAYSSLNLAQAVQVLAYELR 56


>gi|303326981|ref|ZP_07357423.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
 gi|302862969|gb|EFL85901.1| RNA methyltransferase, TrmH family [Desulfovibrio sp. 3_1_syn3]
          Length = 247

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 136 MVLDHVND-------PHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHI 187
           M+LD V         P NIG   R+     C  I +        E A    +  G     
Sbjct: 1   MLLDGVQIVLVKTRFPENIGMAARACANMGCPAIRLVDPERWDREKAGPLATPKGQSLLD 60

Query: 188 PYIRISNLTDALQK--------MHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEG 237
                 +L  A+ +          + G++   +     +++      +++K++L+ G E 
Sbjct: 61  GVRVSPDLAVAVAESSLVLGTTARTGGWRQALLAPGQAAREVAAALARDEKVSLVFGPED 120

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +GL  +       +  +       +LN++ A  + LY   N
Sbjct: 121 RGLNNEEITHCQRLVTIPTDAAASSLNLAQAVLLMLYECAN 161


>gi|30249901|ref|NP_841971.1| rRNA methyltransferase [Nitrosomonas europaea ATCC 19718]
 gi|30180938|emb|CAD85864.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrosomonas europaea ATCC 19718]
          Length = 246

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 22/169 (13%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
            +  LD VR     +VL H + P NIGA  R+        +      S  +S   A++++
Sbjct: 3   PASPLDNVR-----IVLSHTSHPGNIGATARAMKTMGLSRLYLVNPKSFPDSEADARASN 57

Query: 182 GALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKK-------------PLEQEIKNDK 228
                      ++L +A+       F    L++ S+               L +   +  
Sbjct: 58  ARDILESACVCTSLEEAMGDT----FLAAALTARSRDLSHPTRNARQAAGELIRYAHHHP 113

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +AL+ G E  GL             +       +LN++ A  +  Y  +
Sbjct: 114 VALLFGRESAGLTSAEISHCQLTVQIPANSAYSSLNLAAAVQIMAYELR 162


>gi|313139649|ref|ZP_07801842.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132159|gb|EFR49776.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 216

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 72  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDNLVESMP 131

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
           +   + I  ++ + K   +        L+ G E G          G  P   E       
Sbjct: 132 NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIMAG--PHVAEQ----VR 183

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 184 LPMRPSLRSLNLTNCASIAIYEAWRQLG 211


>gi|224282497|ref|ZP_03645819.1| Hypothetical SpoU class rRNA methylase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|311063836|ref|YP_003970561.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310866155|gb|ADP35524.1| RNA methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 215

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 71  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPNFDNLVESMP 130

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
           +   + I  ++ + K   +        L+ G E G          G  P   E       
Sbjct: 131 NS--RIIAFTAHATKLYTEVEYKPTDILLFGPEPGDIPDPMDIMAG--PHVAEQ----VR 182

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 183 LPMRPSLRSLNLTNCASIAIYEAWRQLG 210


>gi|194289317|ref|YP_002005224.1| tRNA:cm32/um32 methyltransferase (trmet(xm32)) [Cupriavidus
           taiwanensis LMG 19424]
 gi|193223152|emb|CAQ69157.1| tRNA:Cm32/Um32 methyltransferase (TrMet(Xm32)) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 272

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 19/166 (11%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--SAVLAKSASGAL 184
           DA    + ++V    + P N+G++ R+        ++      P           ASGA 
Sbjct: 18  DAFGRVRFVLV--ETSHPGNVGSVARAIKTMGFGSLVLVSPREPEVLRHPDAVAMASGAD 75

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSSDSK-------------KPLEQEIKNDKIAL 231
           + +    I +  DA   +          +   +             +  +    +  +A 
Sbjct: 76  DVLAAAVIVDGVDA--ALAGAALTVAMTARQREFGPPRLLPRAAAARARQTLGGSGDVAF 133

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           + G E  GL  +  E   ++ H+       +LN++ A  +  Y  +
Sbjct: 134 VFGNERYGLPNEVVERCNAVTHIPANPAYASLNLAQAVQLVAYEMR 179


>gi|218296368|ref|ZP_03497111.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
           Y51MC23]
 gi|218243162|gb|EED09693.1| RNA methyltransferase, TrmH family, group 1 [Thermus aquaticus
           Y51MC23]
          Length = 244

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 20/157 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPY-IR 191
           +VL    +P N+GA+ R+   F    +       R  P  +      A  A E +   + 
Sbjct: 10  VVLVEPQEPMNVGAVARAMRNFGLARLYLVNPAPRVGPPWAREAYWLAVHAEEILDRAVA 69

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN------------DKIALILGAEGKG 239
           + +L +AL  +       +  +   +K     +               ++AL+ G E  G
Sbjct: 70  VDSLMEALADVE----LVVATTGRPRKLYPAPVVPAWEVPARVLSVEGEVALVFGRETFG 125

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L  +    A  +  +       +LN++ A  V  Y  
Sbjct: 126 LTNEELALAHVIGTIPTAPEQPSLNLAQAVVVFAYEL 162


>gi|303257835|ref|ZP_07343845.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Burkholderiales bacterium 1_1_47]
 gi|330998743|ref|ZP_08322471.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859438|gb|EFL82519.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Burkholderiales bacterium 1_1_47]
 gi|329576240|gb|EGG57756.1| RNA methyltransferase, TrmH family, group 1 [Parasutterella
           excrementihominis YIT 11859]
          Length = 265

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 18/170 (10%)

Query: 126 LDAVRNSQLL-MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
           +D +     +  VL   + P NIG+  R+      D +       P E      + + + 
Sbjct: 1   MDFLPQRGRIRFVLVSPSHPGNIGSAARAIKTMGFDRLYVVSPRHP-EYRTDPDAIAFST 59

Query: 185 EHIPYIRISNLTDAL-QKMHSWGFQTIG---------------LSSDSKKPLEQEIKNDK 228
             +  ++ S  T+ L + +    F                    S +  K   +E   ++
Sbjct: 60  HAVDVLQNSVCTETLLEALKDVSFACALSGYDREFGPPLADLQTSCEMVKTCLEENPQEE 119

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           IA + G E  GL  +          +       +LN++ A  V  Y  Q 
Sbjct: 120 IAFVFGTERSGLTNEEMMLCQLCTAIPANPECDSLNLAQAVQVTAYQAQQ 169


>gi|154248490|ref|YP_001419448.1| RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154162575|gb|ABS69791.1| RNA methyltransferase, TrmH family, group 1 [Xanthobacter
           autotrophicus Py2]
          Length = 298

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRIS 193
           +++L       NIG+  R+   F    +          S      ++GA   +   +   
Sbjct: 18  VVILVEPQLGQNIGSAARAMGNFGLSRLRIVNPREGWPSEPARIFSAGADRILAEAVLYP 77

Query: 194 NLTDAL--------QKMHSWGF--QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           +L  AL              G     +G  + +++   +    + +AL+ G E  GL  +
Sbjct: 78  DLRSALVGVNYAFAATARERGMAKPVLGADAVAQEARSRLAGGEDVALVFGRERTGLYTE 137

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 ++  L +     +LN++   AV  Y 
Sbjct: 138 EVSLCDAILTLPVNPAFASLNLAMCVAVTGYE 169


>gi|114320401|ref|YP_742084.1| RNA methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226795|gb|ABI56594.1| RNA methyltransferase, TrmH family, group 1 [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 260

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 41/169 (24%)

Query: 134 LLMVLDHVNDPHNIGAILR------------------------SAVAFSCDGIITTKRYS 169
           L +VL   + P NIG++ R                        +A A   D ++      
Sbjct: 14  LRIVLVGTSHPGNIGSVARAMKTMGLFRLELVAPECAFPDEQATANASRADDVLEAAGRH 73

Query: 170 PSESAVLAKSA--SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND 227
            +  A LA      G       I  + + D        G + +            E ++ 
Sbjct: 74  DNLDAALAGCGLVMGLSARPRRITTAEVLDV----REAGRRVVA-----------EAESR 118

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +AL+ G E  GL     +   ++ H+       +LN++ A  V  +  
Sbjct: 119 PVALLFGRERSGLTNAELDRCQALVHIPANPEYGSLNLAAAVQVVCHEV 167


>gi|320450586|ref|YP_004202682.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
           scotoductus SA-01]
 gi|320150755|gb|ADW22133.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Thermus
           scotoductus SA-01]
          Length = 252

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 22/160 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPY-IR 191
           +VL    +P N+GA+ R+   F    +       R  P  +      A  A E +   + 
Sbjct: 7   IVLVEPQEPMNVGAVARAMRNFGLSRLYLVNPSPRVGPPWAREAYWLAVHAEEVLDRAVA 66

Query: 192 ISNLTDALQKMHSWGF-QTIGLSSDSKKPLEQEIKNDK------------IALILGAEGK 238
           + +L +AL+     G    +  +   ++     +   +            +AL+ G E  
Sbjct: 67  VESLGEALE-----GVSFVVATTGRPRELYPAPVVTAREVPAHVLSVKGEVALVFGRETF 121

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           GL  +  + A  +  +       +LN++ A  V  Y    
Sbjct: 122 GLTNEELDLAHLIGTIPTAPEQPSLNLAQAVVVFAYELYQ 161


>gi|27367045|ref|NP_762572.1| RRNA methylase [Vibrio vulnificus CMCP6]
 gi|27358613|gb|AAO07562.1| RRNA methylase, putative [Vibrio vulnificus CMCP6]
          Length = 173

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
              +++ L +   P N+GA++R+A  ++   +        S +A        + E I  +
Sbjct: 4   EPTVIIGLHNPKSPTNVGAVMRAAGCYNAAQVRYNGTRY-SRAARFQTDTQNSHERIDLL 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + +LT +L        + + +        L      +K   + G E   L  +  + A 
Sbjct: 63  EMEDLTASLD----GDVEIVCVELVVGATALPHFAHPEKAIYLFGPEDGSLPQEVVDKAH 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + ++   G +   N++    V +Y   +  AK
Sbjct: 119 HVVYIPTHGCM---NLAATVNVVMY---DRLAK 145


>gi|291614716|ref|YP_003524873.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584828|gb|ADE12486.1| RNA methyltransferase, TrmH family, group 1 [Sideroxydans
           lithotrophicus ES-1]
          Length = 254

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 15/153 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL H   P NIGA  R+        +         ++   A +A         +  S++
Sbjct: 12  VVLSHTTHPGNIGAAARAMKTMGLQHLYLINPRYFPDAQATAMAAGADDVLQSAVVCSSI 71

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE------------QEIKNDKIALILGAEGKGLRPK 243
            +A   +    F     +      +E            Q   ++ +AL+ G E  GL  +
Sbjct: 72  DEA---LQGVVFTVAMTARLRDISIEVKAPREAMPEVLQHAASNPVALLFGTEMSGLTNE 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               A    ++       +LN++ A  V  Y  
Sbjct: 129 EMGKAQLGVNIPANPDFSSLNIAAAVQVMAYEL 161


>gi|241662700|ref|YP_002981060.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12D]
 gi|309781257|ref|ZP_07675994.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|240864727|gb|ACS62388.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
           12D]
 gi|308920078|gb|EFP65738.1| tRNA/rRNA methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 294

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 23/176 (13%)

Query: 123 SPTLDAVRNS--QLLMVLDHVNDPHNIGAILRSAVAFSC----DGIITTKRYSPSES-AV 175
               D +R    +   VL   + P N+G+  R+            ++   R + ++S A 
Sbjct: 20  PADPDTLRQRAVRCRFVLVETSHPGNVGSAARALKTMGFGEPGSFVLVRPREADAQSHAD 79

Query: 176 LAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL--------------SSDSKKPLE 221
               ASGA + +   R+ +  D  + +                         +  +    
Sbjct: 80  AVAMASGADDVLAGARVVD--DIGEALAGASLTIALTARPREFGPRRIGPRDAAEEVAAL 137

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +  +A + G E  GL  +  E    + H+       +LN+S A  +  Y  +
Sbjct: 138 LAAPDTTVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 193


>gi|121601814|ref|YP_989116.1| RNA methyltransferase [Bartonella bacilliformis KC583]
 gi|120613991|gb|ABM44592.1| RNA methyltransferase, TrmH family, group 1 [Bartonella
           bacilliformis KC583]
          Length = 275

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VL     P NIG + R+   F    +          +     +AS A   I    + N
Sbjct: 16  VIVLVEPQLPENIGMVARAMANFGLSDLRLINPRETFPNDKAKAAASKADHVIDNALVFN 75

Query: 195 -LTDALQKM---------HSWGFQTIGLSSDSKKPLEQ-EIKNDKIALILGAEGKGLRPK 243
            L DA+  +           +GF+ I  + ++   L Q E    K  ++ G E  GL+  
Sbjct: 76  TLHDAIADLHYIFGTTARKRYGFKIIKSAVEAASILRQHENLGHKTGILFGRERWGLKND 135

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  +    +     +LN++ A  V L
Sbjct: 136 EISLVNEIVTFPVNPAFASLNIAQA--VLL 163


>gi|53803244|ref|YP_115015.1| RNA methyltransferase [Methylococcus capsulatus str. Bath]
 gi|53757005|gb|AAU91296.1| RNA methyltransferase, TrmH family, group 1 [Methylococcus
           capsulatus str. Bath]
          Length = 247

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 13/156 (8%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           S + +VL     P NIG + R+       D  + + +  PSE A     ASGA + +   
Sbjct: 3   SDIRIVLVETTHPGNIGGVARAMKNMGLSDLALVSPKIFPSEQATAR--ASGADDLLAAA 60

Query: 191 R-ISNLTDALQKMH-----SWGFQTIG---LSSD-SKKPLEQEIKNDKIALILGAEGKGL 240
           R   +L DA+         S   +TI    L    +   +    +  + A++ G E  GL
Sbjct: 61  RLFGSLKDAIADCQLVIGASARLRTIAWPELDPRTAAAEIAGLPEGTRSAIVFGREHSGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                E    + H+       +LN++ A  V  Y  
Sbjct: 121 TNGELEQCHFLLHIASNPEFSSLNLACAVQVVAYEL 156


>gi|227822189|ref|YP_002826160.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
 gi|227341189|gb|ACP25407.1| tRNA/rRNA methyltransferase [Sinorhizobium fredii NGR234]
          Length = 275

 Score = 50.0 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 15/140 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKMHS 204
           NIG + R+   F    +          +     +AS A   I   ++ N L +A+  + +
Sbjct: 27  NIGMVARAMANFGLSELRLVNPRDGWPNEKARSAASRADHVIDGAKLYNSLEEAIADL-N 85

Query: 205 WGFQTIGLSSDSKKPLEQEIK-----------NDKIALILGAEGKGLRPKTQETATSMAH 253
           + + T     D  KP+   I             + I +I G E  GL  +    A  +  
Sbjct: 86  FVYATTARDRDGYKPVRSPIVAARTLRQRFKVGEAIGIIFGRERTGLTNEEVALADEIVT 145

Query: 254 LHMPGIIKALNVSNAAAVAL 273
             +     +LN++ A  V L
Sbjct: 146 FPVNPAFASLNLAQA--VLL 163


>gi|33596879|ref|NP_884522.1| methyltransferase [Bordetella parapertussis 12822]
 gi|33573580|emb|CAE37574.1| probable methyltransferase [Bordetella parapertussis]
          Length = 258

 Score = 50.0 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 17/150 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRISNLTD---- 197
           P N+G+  R+        ++      P  +        ASGAL+ +    + +  +    
Sbjct: 18  PGNVGSAARAIKTTGFGELVLVAPRFPDMTAQPEAVTLASGALDVLERAAVHDTLEEALA 77

Query: 198 --ALQKMHSWGFQTIG--------LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L    +   + +G         +  +++ L+       +A++LG E  GL     E 
Sbjct: 78  PVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGV-VAIVLGTERAGLTNAQIEL 136

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + H+       +LNV+ A  +A +  +
Sbjct: 137 CHRICHIPANPQYSSLNVAQALQLAAWELR 166


>gi|237800027|ref|ZP_04588488.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022882|gb|EGI02939.1| RNA methyltransferase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 171

 Score = 50.0 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +  +K +EQ  +  ++AL+ G E  GL  +  +      H+       +LN++ A  V  
Sbjct: 12  ASGEKVIEQAGEGAEVALVFGREHAGLTNEELQRCHFHVHIPSDPAFSSLNLAAAVQVLS 71

Query: 274 YITQ 277
           Y  +
Sbjct: 72  YEVR 75


>gi|206889201|ref|YP_002249465.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741139|gb|ACI20196.1| RNA methyltransferase, TrmH family, group 1 [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 252

 Score = 50.0 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 59/173 (34%), Gaps = 28/173 (16%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           PTL+      +  VL    +  NIGA  R+        +        +   +  ++   A
Sbjct: 2   PTLNHSWKENVYFVLVEPKESGNIGASARAIKNMGFTNLTLI-----NPVPLQDEAYWMA 56

Query: 184 LEHIPYIRISNLTDALQK-MHSWGFQTIGLS-------------SDSKKPLEQEIKNDKI 229
                 +  + +   L + +       IG +              D  K + +  +N+K+
Sbjct: 57  WASKDVLEKAQIFRELDESLKDKAL-IIGTTRRRGAKRGAIIDVKDGVKRVYEVAQNNKV 115

Query: 230 ALILGAEGKGLRPKTQETATSMAHLH----MPGIIKALNVSNAAAVALYITQN 278
           A++ G E KGL  +  E    +  +      P    +LN++ A  +  Y    
Sbjct: 116 AILFGREDKGLFNEEVEKCGYLITIPTSLLQP----SLNLAQAVLIVAYELMR 164


>gi|134046367|ref|YP_001097852.1| RNA methyltransferase [Methanococcus maripaludis C5]
 gi|132663992|gb|ABO35638.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C5]
          Length = 254

 Score = 50.0 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 28/166 (16%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
             N + +++L +     N+GAI R+ + F  + +      S          A  A   + 
Sbjct: 18  CDNVKTVVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TSDVLDEEAYIRAVHAKNIL- 75

Query: 189 YIRISNLTDALQKMHSWGFQT---IGLSSD-------SKKPLE-------QEIKNDKIAL 231
                N      K+    F     +  +         ++ P+            N ++ +
Sbjct: 76  -----NNAKFYSKLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVELNGRLGI 130

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYI 275
           + G E  GL+ +  E    +  +       I  +N+S+A +V LY 
Sbjct: 131 VFGREDDGLKNEYVELCDILVSVPTSNNYPI--MNLSHAVSVLLYE 174


>gi|262369728|ref|ZP_06063056.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
 gi|262315796|gb|EEY96835.1| RNA methyltransferase [Acinetobacter johnsonii SH046]
          Length = 282

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 27/161 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + I     +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPKTYP-HPDIDALAAGATDLIEQIEIVET 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---------------IALILGAEGKG 239
           L DA++  H       G S+ S+      +                   +A++ G E +G
Sbjct: 77  LADAIKDCH----LVFGTSARSRTIPWPLLDARPAAEKSISAVVNDQQDVAVVFGREDRG 132

Query: 240 LRPKTQETATSMAHLHM---PGIIKALNVSNAAAVALYITQ 277
           L  +    A     + +    G+   LNV+ A  V  Y  +
Sbjct: 133 LTNEELAMANYHVTIPVNTDYGV---LNVAQAIQVICYEMR 170


>gi|304438915|ref|ZP_07398838.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372581|gb|EFM26164.1| TrmH family RNA methyltransferase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 155

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 8/150 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N GAI RS         +        +   L ++     + +      N+
Sbjct: 5   IVLYEPEIHWNTGAIARSCGLTHTRLHLIEPFGFEIDDKHLKRAGLDYWDLVDINIYKNV 64

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ-ETATSMAHL 254
            +   K     F     ++ +KK   +    D+  ++ G E +GL              +
Sbjct: 65  EELYAKYPEGRF--FMATTKAKKLYTEVEFQDEDFIMFGPETRGLPEDMIFGNYDMAIKI 122

Query: 255 HM---PGIIKALNVSNAAAVALYITQNHFA 281
            M    G   +LN++N+A + L+       
Sbjct: 123 PMLKDFGR--SLNLANSANIILFEALRQLN 150


>gi|33600713|ref|NP_888273.1| methyltransferase [Bordetella bronchiseptica RB50]
 gi|33568313|emb|CAE32225.1| probable methyltransferase [Bordetella bronchiseptica RB50]
          Length = 258

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 17/150 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRISNLTD---- 197
           P N+G+  R+        ++      P  +        ASGAL+ +    + +  +    
Sbjct: 18  PGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALA 77

Query: 198 --ALQKMHSWGFQTIG--------LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L    +   + +G         +  +++ L+       +A++LG E  GL     E 
Sbjct: 78  PVTLAFALTARVRDLGPPPCDIREAAGLARRHLDDTEAGV-VAIVLGTERAGLTNAQIEL 136

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + H+       +LNV+ A  +A +  +
Sbjct: 137 CHRICHIPANPQYSSLNVAQALQLAAWELR 166


>gi|26991269|ref|NP_746694.1| RNA methyltransferase [Pseudomonas putida KT2440]
 gi|24986324|gb|AAN70158.1|AE016655_3 RNA methyltransferase, TrmH family [Pseudomonas putida KT2440]
          Length = 156

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G+++R+A  +  + +  T +     +             IP I I +L   +      
Sbjct: 19  NVGSVMRAAGCYGVNSVFYTGKRY-ERARDFVTDTKRVHYDIPLIGIDDLQRIIP----L 73

Query: 206 GFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           G   + +   +  +PL      D+   I G E   L    +       ++   G +   N
Sbjct: 74  GCTPVAVELVEGARPLPDYTHPDRAIYIFGPEDGSLSEDVRGWCEETIYIPTEGCM---N 130

Query: 265 VSNAAAVALYIT 276
           ++    V LY  
Sbjct: 131 LAATVNVVLYDR 142


>gi|255030968|ref|ZP_05302919.1| rRNA methylase [Listeria monocytogenes LO28]
          Length = 92

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           +K+Q+   + +         + G H V  AL      + +LL +       +W   L   
Sbjct: 2   EKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VLELLVSSGVSVPEEW---LKGD 53

Query: 91  FPVKTVPPQTIDKIVGKEAVHQGLALETA 119
           + V  +  + I  ++ +    QG+    A
Sbjct: 54  YDVFEISTE-ISHLISETMTEQGVFAVVA 81


>gi|238788189|ref|ZP_04631984.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           frederiksenii ATCC 33641]
 gi|238723776|gb|EEQ15421.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           frederiksenii ATCC 33641]
          Length = 256

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +       +       +LN++ A  +  Y  +  F
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAF 160


>gi|304411867|ref|ZP_07393478.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183]
 gi|307303365|ref|ZP_07583120.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175]
 gi|304349727|gb|EFM14134.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS183]
 gi|306913725|gb|EFN44147.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica BA175]
          Length = 249

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 17/165 (10%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKS- 179
            +   + +S + + L +   P N+G I+R++  +  DG+  T R    +    AV     
Sbjct: 35  ASEQTLDDSAVFIGLVNPKTPVNVGGIMRASGCYGVDGVFYTGRRYELAARSGAVQYHVD 94

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGK 238
              A E IP   +++L  ++        + I +       PL   +   K   + G E  
Sbjct: 95  TKDAGERIPLTGVTSLLASIP----ADTKLICVDLVVGATPLPDFVHPAKAFYVFGPE-D 149

Query: 239 G-LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G +  +  + A ++ ++   G +   N++ +  V LY   +  AK
Sbjct: 150 GTIGQEIIDKADAVVYVPTVGCM---NLAASVNVLLY---DRLAK 188


>gi|332532349|ref|ZP_08408229.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038216|gb|EGI74662.1| tRNA:Cm32/Um32 methyltransferase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 241

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 22/156 (14%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD +R     +VL + +   NIG+  R+        +            + +++++ A  
Sbjct: 3   LDDIR-----IVLVNTSHSGNIGSAARAMKTMGLSKLYL----VDPACEIDSQASALAAG 53

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALI 232
               +  + +   +++  +    TIG S+ S+                  E  N  +AL+
Sbjct: 54  ATDVLGNAVIVGTVEEAIADCTLTIGTSARSRTLSWPMVEPRECGEKLVAEAVNGPVALV 113

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            G E  GL  +  +       +       +LN++ A
Sbjct: 114 FGRENSGLTNEELQLCNYHVCIPANPEYSSLNLAMA 149


>gi|50085211|ref|YP_046721.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
 gi|49531187|emb|CAG68899.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
          Length = 271

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + +     +  
Sbjct: 6   IVMVNTTLPANIGSALRAMKTMGLSQLVLVAPKTYP-HPDIDALAAGAQDLVEKIKIVDT 64

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---------------IALILGAEGKG 239
           L  A+Q  H       G S+ S+      +                   IA++ G E +G
Sbjct: 65  LEQAIQDCHI----VFGTSARSRTIPWPLLDARPAAELSMDAVITRQQEIAIVFGREDRG 120

Query: 240 LRPKTQETATSMAHLHM---PGIIKALNVSNAAAVALYITQ 277
           L  +    A     + +    G+   LNV+ A  V  Y  +
Sbjct: 121 LTNEELALANYHLTIPVNTDYGV---LNVAQAIQVICYEMR 158


>gi|90962111|ref|YP_536027.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|227891134|ref|ZP_04008939.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|301301375|ref|ZP_07207517.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|90821305|gb|ABD99944.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
 gi|227867008|gb|EEJ74429.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
 gi|300214798|gb|ADJ79214.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
           5713]
 gi|300851035|gb|EFK78777.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 170

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    + +  +       ++   + ++     + +      NL   L+ + 
Sbjct: 13  PANTGNIARTCAGTNTELHLIEPLGFSTDDKYMKRAGLDYWDKVKITYHPNLPAFLETIP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKN---DKIALILGAEGKGLRP-KTQETATSMAHLHMP-G 258
             G +   +S  + K   +        +   + G E  GL     ++       +     
Sbjct: 73  ENG-ELYIVSKFASKAYTEADYTNTEKEHYFLFGKETTGLPEMFMRQNPEKCIRIPQNDE 131

Query: 259 IIKALNVSNAAAVALYITQNH 279
            I+ALN+SN AA+ +Y     
Sbjct: 132 HIRALNLSNTAAIVVYEALRQ 152


>gi|259503023|ref|ZP_05745925.1| RNA methyltransferase [Lactobacillus antri DSM 16041]
 gi|259168889|gb|EEW53384.1| RNA methyltransferase [Lactobacillus antri DSM 16041]
          Length = 169

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 7/141 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    + +  +       ++   + ++     + +      +L   L  + 
Sbjct: 13  PANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHDDLPAFLATIP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPK-TQETATSMAHLHMPG- 258
               +   +S  + +                + G E  GL     ++   +   +     
Sbjct: 73  DMK-KLYIVSKFASRDYTDVDYTG-TGDHYFLFGKETTGLPEAFMRKYPENAVRIPQNDD 130

Query: 259 IIKALNVSNAAAVALYITQNH 279
            I+ALN+SN+AA+ +Y     
Sbjct: 131 NIRALNLSNSAAIVIYEALRQ 151


>gi|168700455|ref|ZP_02732732.1| tRNA/rRNA methyltransferase (SpoU) [Gemmata obscuriglobus UQM 2246]
          Length = 104

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLS--SDSKKPLEQEIKNDKIALILGAEGKGL 240
           A   IP  +     +    +     + IG+    +    L +    ++   +LGAE  GL
Sbjct: 7   AWRSIPLFQYLTFDEFYAHLP-HDCRLIGVEFPHEKAVSLPKFTHPERCVYLLGAEDYGL 65

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +  E    + +         LNV+ A ++ +
Sbjct: 66  SKQALERCHRVVYAPSQRC---LNVAVAGSLIM 95


>gi|187928095|ref|YP_001898582.1| TrmH family RNA methyltransferase [Ralstonia pickettii 12J]
 gi|187724985|gb|ACD26150.1| RNA methyltransferase, TrmH family, group 1 [Ralstonia pickettii
           12J]
          Length = 282

 Score = 50.0 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 21/174 (12%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSC----DGIITTKRYSP-SESAVLA 177
            P +   + ++   VL   + P N+G+  R+            ++   R +     A   
Sbjct: 10  DPEILRQQATRCRFVLVETSHPGNVGSTARALKTMGFGEPGSFVLVRPREADAKRHADAV 69

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS--------------SDSKKPLEQE 223
             ASGA + +   R+ +  D  + +          +              +  +      
Sbjct: 70  AMASGADDVLAAARVVD--DIGEALAGASLTIALTARPREFGPRRIGPRAAAEEVAALLA 127

Query: 224 IKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             +  +A + G E  GL  +  E    + H+       +LN+S A  +  Y  +
Sbjct: 128 APDATVAFVFGNERFGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 181


>gi|238753893|ref|ZP_04615253.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           ruckeri ATCC 29473]
 gi|238707881|gb|EEQ00239.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           ruckeri ATCC 29473]
          Length = 257

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     IG S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCNLVIGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +       +       +LN++ A  +  Y  +  F
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAF 160


>gi|123441400|ref|YP_001005387.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166234838|sp|A1JKQ0|TRMJ_YERE8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122088361|emb|CAL11152.1| putative SpoU-family rRNA methylase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 257

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +       +       +LN++ A  +  Y  +  F
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAF 160


>gi|238795106|ref|ZP_04638697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           intermedia ATCC 29909]
 gi|238725554|gb|EEQ17117.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           intermedia ATCC 29909]
          Length = 257

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                  E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRSAHEAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +       +       +LN++ A  +  Y  +  F
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAF 160


>gi|302378509|gb|ADL32340.1| WenM [Proteus vulgaris]
          Length = 167

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     +  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHDY 63

Query: 196 TDALQKMHSW--------GFQTIGLS-----SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L+             G +   L+     + S    +         L+ G E +GL P
Sbjct: 64  YAFLESEGLNPDNAQSPTGARVFALTTKGTPAHSNVSYQDGDY-----LLFGPETRGLPP 118

Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +         + M    +++N+SN  AV ++       
Sbjct: 119 YVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQLG 159


>gi|302378477|gb|ADL32310.1| WenD [Proteus vulgaris]
          Length = 166

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     +  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHDY 63

Query: 196 TDALQKMHSW--------GFQTIGLS-----SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L+             G +   L+     + S    +         L+ G E +GL P
Sbjct: 64  YAFLESEGLNPDNAQSPTGARVFALTTKGTPAHSNVSYQDGDY-----LLFGPETRGLPP 118

Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +         + M    +++N+SN  AV ++       
Sbjct: 119 YVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQLG 159


>gi|226326847|ref|ZP_03802365.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198]
 gi|225204684|gb|EEG87038.1| hypothetical protein PROPEN_00707 [Proteus penneri ATCC 35198]
          Length = 167

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     +  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHDY 63

Query: 196 TDALQKMHSW--------GFQTIGLS-----SDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L+             G +   L+     + S    +         L+ G E +GL P
Sbjct: 64  YAFLESEGLNPDNAQSPSGARVFALTTKGTPAHSNVSYQDGDY-----LLFGPETRGLPP 118

Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +         + M    +++N+SN  AV ++       
Sbjct: 119 YVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQLG 159


>gi|145299949|ref|YP_001142790.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852721|gb|ABO91042.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 230

 Score = 49.7 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 13/140 (9%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKM-- 202
           N+GA  R+      D +         E    +  A GA E +        L +AL  M  
Sbjct: 15  NVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEILTQAEAFDTLPEALADMDL 73

Query: 203 ------HSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                    G +Q      + +  +  +   +K+A++ G E  GL  +    A  +++L 
Sbjct: 74  VIATTARQRGRYQHYLTPGEIRDQIRAKPSLNKVAIVFGCEESGLSNEQLAHADLLSYLP 133

Query: 256 MPGIIKALNVSNAAAVALYI 275
           +     +LN+  A  + LY 
Sbjct: 134 LKVSYPSLNLGQA--IMLYA 151


>gi|254525547|ref|ZP_05137599.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9202]
 gi|221536971|gb|EEE39424.1| RNA methyltransferase TrmH, group 1 [Prochlorococcus marinus str.
           MIT 9202]
          Length = 249

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYI 190
           S L ++L   N P N+G++ R    F  D +          S    K A  G        
Sbjct: 8   SNLKVILVEPNGPLNVGSVARLCSNFEVDELRIVSPKCEIFSLEAKKMALKGQKFLKNCK 67

Query: 191 RISNLTDALQK----MHSWG---FQTIGLSSDSKKPLEQEIKNDKI---ALILGAEGKGL 240
              +L  A+      + S G    +   L   S+   +  +   KI   A+I G E +GL
Sbjct: 68  VFDDLQKAIFDCDLVLASCGRIDVKKDSLFVSSEDIFDWTLSFKKINNLAIIFGREDRGL 127

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  A    ++       +LN+S+A ++ LY  
Sbjct: 128 TNSELLLANKTFNIPTSQNNPSLNLSHAVSIVLYEL 163


>gi|163793629|ref|ZP_02187604.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
 gi|159181431|gb|EDP65946.1| adenylosuccinate lyase [alpha proteobacterium BAL199]
          Length = 264

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 25/163 (15%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           DA     +++V   + D  NIG+  R+ +      +   +      +      ASGA   
Sbjct: 12  DATVGPAVVLVQPQLGD--NIGSCARAMLNCGLYDMRLVQPRDGWPNPRAIAMASGATAV 69

Query: 187 IPYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--------------- 230
           +   R+     +A   ++      +  ++ ++  +++     + A               
Sbjct: 70  LDRARVFETTAEACADLN----YVLATTTRTRD-MKKPALTPRTAALELRKRVALGQGVG 124

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L+ G E  GL  +    A ++  + +     +LN++ A  V L
Sbjct: 125 LLFGPERAGLVNEDVTLADAVLSVPLNPGFSSLNLAQA--VLL 165


>gi|119713263|gb|ABL97329.1| RNA methyltransferase [uncultured marine bacterium HF10_12C08]
          Length = 245

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 16/160 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L     P N+G + RS   F    +   K  SP       K+ + A++    +    +
Sbjct: 8   IILVDTQLPENVGLVARSMYNFGFTNL---KLVSPKLEWPSEKALAVAVDAKNIVENIKV 64

Query: 196 TDALQK-MHSWGFQTIGLS---------SDSKKPLEQEIK---NDKIALILGAEGKGLRP 242
             +L++ +    +     +         SD+ K + +  +   ND I ++ G E  GL  
Sbjct: 65  YSSLREALSDSSYSIGYTARLRDMSKQFSDNSKIISEIKEQKINDSIGVVFGGEASGLTN 124

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 T    +       +LN+S+A  V  Y   +   K
Sbjct: 125 DHLSLITKCVTIDTHENFSSLNLSHAVNVFCYSLFSQVFK 164


>gi|127514505|ref|YP_001095702.1| RNA methyltransferase [Shewanella loihica PV-4]
 gi|126639800|gb|ABO25443.1| RNA methyltransferase, TrmH family, group 2 [Shewanella loihica
           PV-4]
          Length = 154

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R      C   +        E   L ++     +     R  +    L  M   
Sbjct: 14  NTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYSDLTRVTRHKDFESFLSAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMP 257
           G + +  ++   +P  +        L+ G E +GL     E+   +    + M 
Sbjct: 72  GKRIMACTTKGSRPHSEIAFEKDDVLLFGPETRGLPMPIIESIPTSQRLRIPMA 125


>gi|332162657|ref|YP_004299234.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606763|emb|CBY28261.1| tRNA:Cm32/Um32 methyltransferase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666887|gb|ADZ43531.1| SpoU family rRNA methylase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859249|emb|CBX69599.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           enterocolitica W22703]
          Length = 257

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|238765526|ref|ZP_04626442.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           kristensenii ATCC 33638]
 gi|238696265|gb|EEP89066.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           kristensenii ATCC 33638]
          Length = 257

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +       +       +LN++ A  +  Y  +  F
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVRVAF 160


>gi|296130835|ref|YP_003638085.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
 gi|296022650|gb|ADG75886.1| tRNA/rRNA methyltransferase (SpoU) [Cellulomonas flavigena DSM
           20109]
          Length = 153

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 4/137 (2%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G  +R          +        + A L ++     +    +  ++L   L  + 
Sbjct: 11  PGNTGNAIRMCAGTGATLHLVEPLGFELDEARLRRAGLDYHDLAHVVVHASLAALLDALP 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIK 261
           +   +    ++ +          D   L+ G E  GL          T    + M    +
Sbjct: 71  AS--RVWAFTTRATDRYTDVAWRDDDVLLFGPEPTGLPADVLAHPRVTGEVRIPMLPGRR 128

Query: 262 ALNVSNAAAVALYITQN 278
           ++N+SNAAAVA Y    
Sbjct: 129 SMNLSNAAAVATYEAWR 145


>gi|297520579|ref|ZP_06938965.1| putative tRNA/rRNA methyltransferase YibK [Escherichia coli OP50]
          Length = 86

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNA 268
           G  + S    +         L+ G E +GL     +   A     + M    +++N+SNA
Sbjct: 11  GTPAHSAVSYQDGDY-----LMFGPETRGLPASILDALPAEQKIRIPMVPDSRSMNLSNA 65

Query: 269 AAVALYITQNHFA 281
            +V +Y       
Sbjct: 66  VSVVVYEAWRQLG 78


>gi|330813688|ref|YP_004357927.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486783|gb|AEA81188.1| rRNA Methylase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 148

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 2/138 (1%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N  AI+R    F  +  I        +   L +     L+        +  D   K  
Sbjct: 12  PQNTAAIIRICACFDINLEIIKPCGYFFDKKKLDRIYLDYLDICNLRFYESYDDFFSKKK 71

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
               + I L++ S     + +      L+ G E  G+  +   +  +   + M    ++ 
Sbjct: 72  DT--RLILLTTKSDSNYTKFLYKKNDTLVFGKESAGVPEEIHNSIQNKLTIKMNKKTRSF 129

Query: 264 NVSNAAAVALYITQNHFA 281
           N++++ A+          
Sbjct: 130 NIASSVAIVASEALRQIN 147


>gi|116071061|ref|ZP_01468330.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
 gi|116066466|gb|EAU72223.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. BL107]
          Length = 256

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 17/163 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + +++VL     P NIG++ R    F+ + +          S    + A    E +   +
Sbjct: 2   NNVVVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHTAK 61

Query: 192 -ISNLTDALQKMHSWGFQTIGLSSDSKKPLE---------------QEIKNDKIALILGA 235
               L  A+         + G       PL                 + +   IA++ G 
Sbjct: 62  LYPTLLSAIGDCRRS-VASCGRIDHGAIPLHPPTEALTWLLAKPTPAQPQPGPIAVVFGR 120

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E +GL          +  LH      +LN+S++  + L+    
Sbjct: 121 EDRGLSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDLAR 163


>gi|114707293|ref|ZP_01440190.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537174|gb|EAU40301.1| probable tRNA/rRNA methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 256

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 22/163 (13%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +   ++L       NIG + R+   F    +   K      +     +AS A   +   R
Sbjct: 11  APPAIILVEPQMGENIGMVARAMANFELADLRLVKPRDGWPNEKARATASRADHVLDAAR 70

Query: 192 I-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------------IKNDKIALILGAEG 237
           +   L DAL  +          ++ ++   +                   K  +I G E 
Sbjct: 71  VFEKLEDALADLS----LVYATTARARDSYKPVRGPEEAAERLVAHAPAGKTGVIFGREK 126

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
            GL       A  +    +     +LN++ A  V L  Y  +N
Sbjct: 127 YGLENDEVGLADEIVTFPVNPKFASLNIAQA--VLLVSYAWRN 167


>gi|170767374|ref|ZP_02901827.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
 gi|170123708|gb|EDS92639.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
          Length = 246

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVITYEVR 157


>gi|75676802|ref|YP_319223.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter winogradskyi
           Nb-255]
 gi|74421672|gb|ABA05871.1| tRNA/rRNA methyltransferase (SpoU) [Nitrobacter winogradskyi
           Nb-255]
          Length = 156

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 28/93 (30%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G ILR       +  I      P       ++    L+ +  +R  +     Q   
Sbjct: 11  PQNTGTILRLCACLGVEAHIIEPAGFPVSDRHFRRAGMDYLDQVTIVRHDSWLKFEQWRA 70

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE 236
             G + +  ++    P           L+ G E
Sbjct: 71  GDGGRLVLFTTRGALPYLDHRYAATDILLFGRE 103


>gi|331006347|ref|ZP_08329659.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330419852|gb|EGG94206.1| tRNA (cytosine34-2'-O-)-methyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 127

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 170 PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-EIKNDK 228
             +   L ++     E        N  D +    +   +   +S+   +     E  ND 
Sbjct: 11  DLDDKKLRRAGLDYGEWQDMRTYENWDDFIS--QTAPKRLFAISTKGARHYHDIEFANDD 68

Query: 229 IALILGAEGKGLRPKTQ--ETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
              + G E +GL          T    + M    +++N+SN+ AV +Y +   
Sbjct: 69  YV-VFGPETRGLPDNVLYHTLMTEQVRIPMTENSRSMNLSNSVAVIVYESWRQ 120


>gi|325970709|ref|YP_004246900.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
 gi|324025947|gb|ADY12706.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta sp. Buddy]
          Length = 247

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 15/149 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           +++ +VL    D  NIG+  R+        ++        E+ V   +   +       R
Sbjct: 8   ARIQIVLVDTQDGANIGSTCRAMKTMGITRLVLVGEREYDENRVRTLALHASDVWDNAKR 67

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA------------LILGAEGKG 239
              L +AL +               K      +   ++A            ++ G E  G
Sbjct: 68  FPTLKEALAQ---SVLSVAATRRRGKFRKNSALSPLQLASTIQQTGQGLVSIVFGRESDG 124

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L        + +  +       +LN+S A
Sbjct: 125 LTDDEVAQCSQVVTIPTSDQFPSLNLSQA 153


>gi|150400509|ref|YP_001324275.1| RNA methyltransferase [Methanococcus aeolicus Nankai-3]
 gi|150013212|gb|ABR55663.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus aeolicus
           Nankai-3]
          Length = 231

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 32/155 (20%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAI R  + F  + +      S  +     +    A+     +  +     LQ+   
Sbjct: 14  GNVGAISRCMMNFGVNELKIVGNNSIIDKEAEIR----AVHSKKILNNAKFYGTLQEALE 69

Query: 205 WGFQTIGLSS--DSKKPLEQEIKN------------DKIALILGAEGKGLRPKTQETATS 250
                +G S      K +++                 ++ L+ G E  GL     E    
Sbjct: 70  DIDFAVGTSGAVSGDKNIKRIPITPKELAEKHKTIDGRLGLVFGREDYGLYNDELELCDL 129

Query: 251 MAHLH-------MPGIIKALNVSNAAAVALYITQN 278
              +        M       N+S+A ++ LY   N
Sbjct: 130 FVSIPTSEDYPIM-------NLSHAVSIILYEIYN 157


>gi|237705043|ref|ZP_04535524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           sp. 3_2_53FAA]
 gi|226901409|gb|EEH87668.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Escherichia
           sp. 3_2_53FAA]
          Length = 246

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHCHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|22125231|ref|NP_668654.1| ATP synthase beta subunit [Yersinia pestis KIM 10]
 gi|45442336|ref|NP_993875.1| SpoU family rRNA methylase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597177|ref|YP_071368.1| SpoU family rRNA methylase [Yersinia pseudotuberculosis IP 32953]
 gi|108808333|ref|YP_652249.1| SpoU family rRNA methylase [Yersinia pestis Antiqua]
 gi|108811402|ref|YP_647169.1| SpoU rRNA methylase family [Yersinia pestis Nepal516]
 gi|145599515|ref|YP_001163591.1| SpoU rRNA methylase family [Yersinia pestis Pestoides F]
 gi|149365357|ref|ZP_01887392.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
 gi|153947216|ref|YP_001400147.1| RNA methyltransferase [Yersinia pseudotuberculosis IP 31758]
 gi|162420842|ref|YP_001605042.1| RNA methyltransferase [Yersinia pestis Angola]
 gi|165928245|ref|ZP_02224077.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166008335|ref|ZP_02229233.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212473|ref|ZP_02238508.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399653|ref|ZP_02305177.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421340|ref|ZP_02313093.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423345|ref|ZP_02315098.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470018|ref|ZP_02334722.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis FV-1]
 gi|186896271|ref|YP_001873383.1| RNA methyltransferase [Yersinia pseudotuberculosis PB1/+]
 gi|218929957|ref|YP_002347832.1| putative SpoU family rRNA methylase [Yersinia pestis CO92]
 gi|229838482|ref|ZP_04458641.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895487|ref|ZP_04510658.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
 gi|229899051|ref|ZP_04514195.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901656|ref|ZP_04516778.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
 gi|270489848|ref|ZP_06206922.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
           D27]
 gi|294504542|ref|YP_003568604.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
 gi|81638848|sp|Q667X9|TRMJ_YERPS RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122383052|sp|Q1C5G8|TRMJ_YERPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|122384969|sp|Q1CKB1|TRMJ_YERPN RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|123776962|sp|Q7CJN8|TRMJ_YERPE RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|166234839|sp|A4TMV6|TRMJ_YERPP RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|21958100|gb|AAM84905.1|AE013736_1 putative ATP synthase beta subunit [Yersinia pestis KIM 10]
 gi|45437200|gb|AAS62752.1| putative SpoU-family rRNA methylase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590459|emb|CAH22099.1| putative SpoU-family rRNA methylase [Yersinia pseudotuberculosis IP
           32953]
 gi|108775050|gb|ABG17569.1| SpoU-family rRNA methylase [Yersinia pestis Nepal516]
 gi|108780246|gb|ABG14304.1| putative SpoU-family rRNA methylase [Yersinia pestis Antiqua]
 gi|115348568|emb|CAL21509.1| putative SpoU-family rRNA methylase [Yersinia pestis CO92]
 gi|145211211|gb|ABP40618.1| SpoU-family rRNA methylase [Yersinia pestis Pestoides F]
 gi|149291770|gb|EDM41844.1| putative SpoU-family rRNA methylase [Yersinia pestis CA88-4125]
 gi|152958711|gb|ABS46172.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353657|gb|ABX87605.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis
           Angola]
 gi|165919752|gb|EDR37085.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992717|gb|EDR45018.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206404|gb|EDR50884.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960829|gb|EDR56850.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052157|gb|EDR63565.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057515|gb|EDR67261.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186699297|gb|ACC89926.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681585|gb|EEO77679.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Nepal516]
 gi|229687996|gb|EEO80068.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694848|gb|EEO84895.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701293|gb|EEO89321.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis Pestoides A]
 gi|262362465|gb|ACY59186.1| putative SpoU-family rRNA methylase [Yersinia pestis D106004]
 gi|262366530|gb|ACY63087.1| putative SpoU-family rRNA methylase [Yersinia pestis D182038]
 gi|270338352|gb|EFA49129.1| RNA methyltransferase, TrmH family, group 1 [Yersinia pestis KIM
           D27]
 gi|294355001|gb|ADE65342.1| putative SpoU-family rRNA methylase [Yersinia pestis Z176003]
 gi|320016041|gb|ADV99612.1| tRNA Cm32/Um32 methyltransferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 257

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGKATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|327396446|dbj|BAK13868.1| tRNA/rRNA methyltransferase LasT [Pantoea ananatis AJ13355]
          Length = 234

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 20/146 (13%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           NIGA  R+      + +         +     + A GA + +  I+    L +AL  +  
Sbjct: 17  NIGAAARAMKTMGFNEMRIV-ASDAWQDPAARRLAHGAGDILDRIKTFDTLAEALADI-- 73

Query: 205 WGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRPKTQETATSM 251
             F     +    +                       +AL+ G E  GL  +  E    +
Sbjct: 74  -DFSVATTARSRARFRYYATPQQVEAQLREKRQWVNSMALVFGREDSGLTNEELEQVDLL 132

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M     +LN+  A  V +Y  Q
Sbjct: 133 TGIPMANDYPSLNLGQA--VMVYCYQ 156


>gi|170023520|ref|YP_001720025.1| RNA methyltransferase [Yersinia pseudotuberculosis YPIII]
 gi|169750054|gb|ACA67572.1| RNA methyltransferase, TrmH family, group 1 [Yersinia
           pseudotuberculosis YPIII]
          Length = 257

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGKATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|26553462|ref|NP_757396.1| rRNA methylase [Mycoplasma penetrans HF-2]
 gi|26453468|dbj|BAC43800.1| rRNA methylase [Mycoplasma penetrans HF-2]
          Length = 161

 Score = 49.7 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 7/146 (4%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R+ V F+    +            + ++     +H+      + 
Sbjct: 4   IVLFQPEIPENTGNISRTCVGFNATLHMIRPFGFILNDKRMKRAGLDYWDHLKRKEYDDW 63

Query: 196 TDAL-QKMHSWGFQTIGLSSDSKKPL-----EQEIKNDKIALILGAEGKGLRPKTQET-A 248
           +D   Q + +   +   ++  + K +     ++  K+++I  + G E KGL  +  E   
Sbjct: 64  SDFESQNLVNKNSKVFLITKFADKSISNLTKDELTKDEEIFFVFGRETKGLTSEIMEKYK 123

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY 274
                + M   I++ N+SN+ A+  +
Sbjct: 124 KFQLKIEMNSNIRSFNLSNSVAIVAF 149


>gi|73540818|ref|YP_295338.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
 gi|72118231|gb|AAZ60494.1| RNA methyltransferase TrmH, group 1 [Ralstonia eutropha JMP134]
          Length = 314

 Score = 49.3 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 65/183 (35%), Gaps = 27/183 (14%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--E 172
           A  TA L  P        + ++V    + P N+G++ R+        ++      P   E
Sbjct: 32  AAGTAALAMPADGMFARVRFVLV--ETSHPGNVGSVARAIKTMGFGSLVLVSPREPGVRE 89

Query: 173 SAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL-----------------SSD 215
                  ASGA      +  + + D+++       QT+ +                 ++ 
Sbjct: 90  HPDAVAMASGAD---DVLAGAVIVDSIEAALEGATQTVAMTARQREFGPPRLLPRDAAAR 146

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII-KALNVSNAAAVALY 274
             + L      D+IA + G E  GL     E   ++ H+     +  +LN++ A  +  Y
Sbjct: 147 GAESL-AARAGDEIAFVFGNERYGLPNDVVERCVAVTHIP-ANPVYASLNLAQAVQLIAY 204

Query: 275 ITQ 277
             +
Sbjct: 205 EMR 207


>gi|118588605|ref|ZP_01546013.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
           12614]
 gi|118438591|gb|EAV45224.1| probable tRNA/rRNA methyltransferase protein [Stappia aggregata IAM
           12614]
          Length = 270

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 19/166 (11%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           AV      ++L       NIG   R+   F    +          S     SAS A   I
Sbjct: 13  AVTAKPPAVILCEPQLGENIGTAARAMANFGLVDLRIVNPRDGWPSEKARASASRADHVI 72

Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALI 232
             +++  ++  A+  +          ++               ++K +E   +      +
Sbjct: 73  DKVQVFDSVEAAIADLQ----FVFATTARSREVPKPVRGPDEAARKSVELGEQGAATGYL 128

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            G E  GL  +    +  +  L +     +LN++ A  V  Y  + 
Sbjct: 129 FGRERWGLNNEEVALSDEIVTLPVDPDFASLNIAQAVLVCAYEWRK 174


>gi|33592943|ref|NP_880587.1| methyltransferase [Bordetella pertussis Tohama I]
 gi|33572591|emb|CAE42183.1| probable methyltransferase [Bordetella pertussis Tohama I]
 gi|332382355|gb|AEE67202.1| methyltransferase [Bordetella pertussis CS]
          Length = 258

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRISN-LTDALQ 200
           P N+G+  R+        ++      P  +        ASGAL+ +    + + L +AL 
Sbjct: 18  PGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALA 77

Query: 201 ----------KMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                     ++   G         +  +++ L+       +A++LG E  GL     E 
Sbjct: 78  PVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGV-VAIVLGTERAGLTNAQIEL 136

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + H+       +LNV+ A  +A +  +
Sbjct: 137 CHRICHIPANPQYSSLNVAQALQLAAWELR 166


>gi|254292954|ref|YP_003058977.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
 gi|254041485|gb|ACT58280.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
          Length = 253

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 17/159 (10%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-I 187
           + N Q  ++L       NIGA  R    F    +          +      ++GA E  +
Sbjct: 5   ISNRQPAIILVSPQMGENIGATARVMANFGLKDLRIINPRDGWPNDKADTMSAGAFEWGV 64

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSSDS---KKPLEQE------IKNDK---IALILGA 235
                  L   L  +       +  ++     +KP+         + +     + ++ GA
Sbjct: 65  EAKVFDTLEAGLADLT----YVLATTARPRGMEKPVFNAEEGIGALMSRPDVGVGVMFGA 120

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           E  GL  +    A  +    +     +LN++ A  V  +
Sbjct: 121 EKAGLLNEDVALADGILTYPVDRSFSSLNLAQAVGVFAH 159


>gi|70606436|ref|YP_255306.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
 gi|68567084|gb|AAY80013.1| SpoU rRNA methylase [Sulfolobus acidocaldarius DSM 639]
          Length = 235

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 22/150 (14%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQK--M 202
           N+G I R    F  D            +  +  SA G+      ++I+N   DA++   +
Sbjct: 15  NLGFIARLVKNFLIDEFYVVNPKCD-INEAIKFSAKGSEVIEKMMKITNNFDDAIRDVDL 73

Query: 203 HSWGFQTIGLSSDSKK------------PLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
                  I  SS +               LE+ IK+ K+A I G E  GL  +    +  
Sbjct: 74  K------IATSSIADIKGDLLRKSIRPIDLERLIKDKKVAFIFGRESVGLTREEIAKSDF 127

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
           +  +        LN+S+A  + LY    + 
Sbjct: 128 LLFIPANPEYPVLNLSHAVGIVLYELWRNR 157


>gi|15965543|ref|NP_385896.1| hypothetical protein SMc00482 [Sinorhizobium meliloti 1021]
 gi|307302663|ref|ZP_07582419.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           BL225C]
 gi|307318510|ref|ZP_07597944.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           AK83]
 gi|15074724|emb|CAC46369.1| Hypothetical tRNA/rRNA methyltransferase [Sinorhizobium meliloti
           1021]
 gi|306895850|gb|EFN26602.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           AK83]
 gi|306903027|gb|EFN33618.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium meliloti
           BL225C]
          Length = 276

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           NIG + R+   F    +          S     +AS A   I   +    L +AL  + +
Sbjct: 27  NIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAKLYETLEEALADL-N 85

Query: 205 WGFQTIGLSSDSKKPL-----------EQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + + T     D  KP+            +  + +K+ +I G E  GL       A  +  
Sbjct: 86  FVYATTARDRDGFKPVRSPIVAARELRHRFKEGEKVGIIFGRERTGLTNAEVALADEIVT 145

Query: 254 LHMPGIIKALNVSNAAAVAL 273
             +     +LN++ A  V L
Sbjct: 146 FPVNPAFASLNLAQA--VLL 163


>gi|184155041|ref|YP_001843381.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|260663585|ref|ZP_05864474.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
 gi|183226385|dbj|BAG26901.1| rRNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|260551811|gb|EEX24926.1| rRNA methyltransferase [Lactobacillus fermentum 28-3-CHN]
          Length = 168

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 16/145 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+         +       ++   + ++     + +  +   +L   L  + 
Sbjct: 13  PANTGNIARTCAGTDTVLHLIKPLGFSTDDKHMKRAGLDYWDKVKVVYHDDLVAFLDSID 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQ----ETATSMAHLH 255
                 +  S  +++   +      IA     + G E  GL         E A     + 
Sbjct: 73  LDHLYIV--SKFAERDYSEVDYT--IAGDHYFLFGKETTGLPEGFMRRYPEKA---IRIP 125

Query: 256 MP-GIIKALNVSNAAAVALYITQNH 279
                I+ALN+SN AA+ +Y     
Sbjct: 126 QDDNNIRALNLSNTAAIVIYEALRQ 150


>gi|213021906|ref|ZP_03336353.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 217

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|269965158|ref|ZP_06179292.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
 gi|269830144|gb|EEZ84371.1| RNA methyltransferase, TrmH family [Vibrio alginolyticus 40B]
          Length = 239

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+      + ++        +  V  ++ + A       + + +
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLNQLVL----VDPQCEVDEQTLALAAGAGDIAQNAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGLR 241
              L++        +G S+ S+  LE  +                  +AL+ G E  GL 
Sbjct: 63  VGTLEEAVEDCGLVVGSSARSRT-LEWPMLEPRECGEKFAVEGRKHPVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +       +       +LN++ A
Sbjct: 122 NEELQKCHYHVCIPANPEYSSLNLAMA 148


>gi|213421799|ref|ZP_03354865.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 200

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|330835848|ref|YP_004410576.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
 gi|329567987|gb|AEB96092.1| tRNA/rRNA methyltransferase (SpoU) [Metallosphaera cuprina Ar-4]
          Length = 232

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L      +N+G I R    F  D +         + A    SA G         +  L
Sbjct: 4   VILVEPEGEYNVGFIARLCKNFDVDQLYIVNPKCDLDKAKQF-SAKGNTFLERAKVVDKL 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKN---------DKIALILGAEGKGLRPKTQE 246
            DA++ +      T  ++      L + +            ++ L+ G E  GL  +   
Sbjct: 63  EDAIEDL-DLKISTSSIADSKGDMLRKSMAPWEISSLIGRRQVGLVFGRESVGLTREEIA 121

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               M  +        LN+S+A ++ LY  
Sbjct: 122 MTDIMVFIPANRDYPVLNLSHAVSIILYEL 151


>gi|289583255|ref|YP_003481721.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
           43099]
 gi|289532808|gb|ADD07159.1| RNA methyltransferase, TrmH family, group 1 [Natrialba magadii ATCC
           43099]
          Length = 263

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 13/167 (7%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L + R    + V+D    P N+G I R+   F    ++                A  A
Sbjct: 15  DDLPSRRTPPAVAVVDA-QFPGNVGTISRAMKNFGFSNLLLIDPPELDPDGEAYGFAGHA 73

Query: 184 LEHI-PYIRISNLTDALQKMHSWGFQTIGLSSDSK---------KPLEQEIKN--DKIAL 231
            + + P     +  + +   H+ G   +   +D             L + +       AL
Sbjct: 74  RDDVLPNATEISFDELVSDYHTIGCTAVTNENDRSHMRFPFSTPADLAERLPTVEAPTAL 133

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           + G E  GL  +       +  +        LN+  AA + LY  ++
Sbjct: 134 VFGRERVGLTNEELAHIDEICAIPASEEYPVLNLGQAATITLYELRS 180


>gi|238784221|ref|ZP_04628234.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           bercovieri ATCC 43970]
 gi|238714930|gb|EEQ06929.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           bercovieri ATCC 43970]
          Length = 257

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQILAYEVR 157


>gi|70728880|ref|YP_258629.1| RNA methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68343179|gb|AAY90785.1| RNA methyltransferase, putative [Pseudomonas fluorescens Pf-5]
          Length = 155

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 12/146 (8%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T +     +           + IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGKRY-ERARDFVTDTKKVHQDIPLIGIDDLKK 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         +  +PL +    D+   I G E   L  + ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVEGARPLPEYTHPDRALYIFGPEDGSLDKEIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
            G +   N++    V LY   +  AK
Sbjct: 126 TGCM---NLAATVNVVLY---DRLAK 145


>gi|332141307|ref|YP_004427045.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551329|gb|AEA98047.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 182

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 18/158 (11%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALE 185
           ++N ++ + L +  +P N+ +ILR+A  +    +  T    R++   +A          +
Sbjct: 16  IKNQKISIGLVNPKNPVNVASILRAAGCYGVASVFYTGQRYRFAKDFNADTKAF----HK 71

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
            IP I + NL D + +  S     + +   +   PL      +    +LG E   +    
Sbjct: 72  TIPTIGVDNLRDVIPQHAS----VVAVELVEGATPLPSFEHPENAFYLLGPEDGSIGEDI 127

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                 + ++     +   N++  A V LY   +  AK
Sbjct: 128 LSWCDHVVYVPTYSCM---NLAATANVLLY---DRLAK 159


>gi|255023185|ref|ZP_05295171.1| hypothetical protein LmonocyFSL_06450 [Listeria monocytogenes FSL
          J1-208]
          Length = 63

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 10 EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIF 69
          E+I S+K+          + +KK+Q+   + +         + G H V  AL      + 
Sbjct: 2  EQIQSVKNDRV-------KTWKKLQTRKGRDK----TGTYLVEGFHLVEEALRQDGL-VL 49

Query: 70 QLLATKNALARLDW 83
          +LL +       +W
Sbjct: 50 ELLVSSGVSVPEEW 63


>gi|198242671|ref|YP_002216611.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197937187|gb|ACH74520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326624366|gb|EGE30711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 243

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I    +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNGQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|320180527|gb|EFW55458.1| tRNA:Cm32/Um32 methyltransferase [Shigella boydii ATCC 9905]
          Length = 245

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAHI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANIPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|238758816|ref|ZP_04619989.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           aldovae ATCC 35236]
 gi|238702924|gb|EEP95468.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Yersinia
           aldovae ATCC 35236]
          Length = 257

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  +     IG S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVIGTSARSRTLPWPMLEPRECGVRSAREAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
              +       +       +LN++ A  +  Y  +  F
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMAVQIIAYEVRVAF 160


>gi|159905005|ref|YP_001548667.1| RNA methyltransferase [Methanococcus maripaludis C6]
 gi|159886498|gb|ABX01435.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C6]
          Length = 234

 Score = 49.3 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 28/160 (17%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L +     N+GAI R+ + F  + +      S          A  A   +      N
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TSDILDEEAYIRAVHAKNIL------N 56

Query: 195 LTDALQKMHSWGFQT---IGLSSD--SKKPLEQE------------IKNDKIALILGAEG 237
                 K+    F     +  +      + + +               N  + ++ G E 
Sbjct: 57  NAKFYSKLEDAIFDIDFTVATTGAVCGDRNINRVPVTPRELAKKHLDLNGSLGIVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYI 275
            GL+ +  E    +  +       I  +N+S+A +V LY 
Sbjct: 117 DGLKNEDVEFCDILVSVPTSNKYPI--MNLSHAVSVLLYE 154


>gi|256846965|ref|ZP_05552411.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715629|gb|EEU30604.1| RNA methyltransferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 169

 Score = 49.3 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 11/143 (7%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQ--- 200
           P N G I R+    +    +       ++   + ++     + +  +   +L   +Q   
Sbjct: 13  PANTGNIARTCAGTNTVLHLIKPLGFSTDDKHMRRAGLDYWDKVKVVYHDDLPSFIQTVP 72

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLR-PKTQETATSMAHLHMP 257
            +         +S  + +        +      + G E  GL  P  ++       +   
Sbjct: 73  DLK----HLYIVSKFATRDYTDVDYTESGDHYFLFGKETTGLPEPFMRKYPELAIRIPQN 128

Query: 258 GI-IKALNVSNAAAVALYITQNH 279
              I+ALN+SN+AA+ +Y     
Sbjct: 129 DQNIRALNLSNSAAIIIYEALRQ 151


>gi|71415298|ref|XP_809720.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874146|gb|EAN87869.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 469

 Score = 49.3 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN--AAAVALYITQN 278
           E  +  + ++LG E  GL            ++   G I +L  S   A A+AL+   +
Sbjct: 135 EDCDGGVEIVLGME-NGLSENVVSQCDYCLYIPQYGSIGSL--SMISAMAIALHSAAS 189



 Score = 36.6 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAI+R+A  F+C+ +I   R          + A G    I  +  S + DA  +   
Sbjct: 266 RNIGAIMRNANVFNCEQMIVLHRR-----KFNRRGALGTQHLIKTLFCSGVDDAQCQKSL 320

Query: 205 WGFQT 209
            G+  
Sbjct: 321 EGYTI 325


>gi|188533164|ref|YP_001906961.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188028206|emb|CAO96064.1| tRNA/rRNA methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 241

 Score = 49.3 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 17/160 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVKPDSQAIALAAGAS----DVIGEAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  S     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEAISGCSLVVGTSARSRSLPWPMLDPRECGIKSVEEGQHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +  +       +       +LN++ A  +  Y  +  F +
Sbjct: 123 EELQKCHYHVAIAANPDYSSLNLAMAVQIIAYEVRMAFLQ 162


>gi|168238284|ref|ZP_02663342.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736797|ref|YP_002115608.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712299|gb|ACF91520.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288817|gb|EDY28190.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 243

 Score = 49.3 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|16761459|ref|NP_457076.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16765865|ref|NP_461480.1| rRNA methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29140844|ref|NP_804186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56412577|ref|YP_149652.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161612690|ref|YP_001586655.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167549427|ref|ZP_02343186.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167992671|ref|ZP_02573767.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168232119|ref|ZP_02657177.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168243330|ref|ZP_02668262.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261412|ref|ZP_02683385.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466698|ref|ZP_02700552.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168821474|ref|ZP_02833474.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194448527|ref|YP_002046606.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194470101|ref|ZP_03076085.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|197249941|ref|YP_002147500.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263679|ref|ZP_03163753.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197361512|ref|YP_002141148.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|200387870|ref|ZP_03214482.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929589|ref|ZP_03220663.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205353644|ref|YP_002227445.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857953|ref|YP_002244604.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213425309|ref|ZP_03358059.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213646423|ref|ZP_03376476.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855575|ref|ZP_03383815.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238912666|ref|ZP_04656503.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289825401|ref|ZP_06544638.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|54040206|sp|P66975|TRMJ_SALTI RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|54042610|sp|P66974|TRMJ_SALTY RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|81362035|sp|Q5PNG3|TRMJ_SALPA RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|25304297|pir||AH0824 probable RNA methyltransferase STY2791 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421090|gb|AAL21439.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503759|emb|CAD02748.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136469|gb|AAO68035.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126834|gb|AAV76340.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161362054|gb|ABX65822.1| hypothetical protein SPAB_00387 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406831|gb|ACF67050.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456465|gb|EDX45304.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|195630820|gb|EDX49412.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197092988|emb|CAR58420.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213644|gb|ACH51041.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197241934|gb|EDY24554.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|199604968|gb|EDZ03513.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321308|gb|EDZ06508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205273425|emb|CAR38400.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325485|gb|EDZ13324.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205329145|gb|EDZ15909.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333625|gb|EDZ20389.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205337632|gb|EDZ24396.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341947|gb|EDZ28711.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349568|gb|EDZ36199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709756|emb|CAR34108.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247741|emb|CBG25569.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994667|gb|ACY89552.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159094|emb|CBW18608.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913534|dbj|BAJ37508.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320087043|emb|CBY96812.1| putative ATP synthase beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222750|gb|EFX47821.1| tRNA:Cm32/Um32 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613315|gb|EFY10257.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322620481|gb|EFY17346.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625051|gb|EFY21880.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629505|gb|EFY26281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322633892|gb|EFY30631.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635498|gb|EFY32209.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639826|gb|EFY36505.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644288|gb|EFY40832.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322652255|gb|EFY48612.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654837|gb|EFY51154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658235|gb|EFY54501.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322661694|gb|EFY57912.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669674|gb|EFY65820.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673319|gb|EFY69424.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322674892|gb|EFY70979.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682915|gb|EFY78933.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685576|gb|EFY81571.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323130875|gb|ADX18305.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194687|gb|EFZ79877.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200371|gb|EFZ85452.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201271|gb|EFZ86338.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208341|gb|EFZ93281.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211583|gb|EFZ96421.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323216015|gb|EGA00747.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221912|gb|EGA06306.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225597|gb|EGA09824.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229314|gb|EGA13438.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235371|gb|EGA19455.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237443|gb|EGA21506.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245198|gb|EGA29199.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248772|gb|EGA32699.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254048|gb|EGA37869.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323254913|gb|EGA38705.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262018|gb|EGA45583.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323267802|gb|EGA51283.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269639|gb|EGA53091.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326628746|gb|EGE35089.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989472|gb|AEF08455.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 243

 Score = 49.3 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|127513340|ref|YP_001094537.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella loihica PV-4]
 gi|126638635|gb|ABO24278.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella loihica PV-4]
          Length = 174

 Score = 49.3 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 25/161 (15%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--------ESAVLAKSASGA 183
           S++++ L +   P N+G ++R+A  +  D +  T +             +    + +   
Sbjct: 5   SKVIIGLQNPKSPTNVGGVMRAAGCYRADEVRYTGKRYALAAQHRGEQYNTDTKRVSQ-- 62

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LR 241
             HIP   + +L D+L        + I +   +   PL       K   + G E  G L 
Sbjct: 63  --HIPLNGVESLLDSLD----ADTKVICVDLVEGATPLPAFSHPQKAIYLFGPE-DGTLD 115

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + A  + ++   G +   N++++  V LY   +  AK
Sbjct: 116 QALIDCADEVVYVPTVGCM---NLASSVNVLLY---DRLAK 150


>gi|62181109|ref|YP_217526.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224582915|ref|YP_002636713.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|75481665|sp|Q57LG7|TRMJ_SALCH RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|62128742|gb|AAX66445.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467442|gb|ACN45272.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322715599|gb|EFZ07170.1| putative rRNA methylase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 243

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|322821913|gb|EFZ28112.1| hypothetical protein TCSYLVIO_5661 [Trypanosoma cruzi]
          Length = 532

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 64/180 (35%), Gaps = 25/180 (13%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG---IITTKR----YSPSES 173
           LL+   +   +S L + L+      N    +R+ + F        ++ KR     S    
Sbjct: 40  LLNGWPNRCLHSHLFVGLEGCTSAFNAMNSIRTCMHFGTTFPPFFLSIKRAEDIRSLHPR 99

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQKMH----SWG-FQTIGLS--SDSKKPLEQEIKN 226
               K+ S  L   P   +S +    + +     S+G    + L   ++  + +     +
Sbjct: 100 CTARKTNSEDLTR-PGATLSQVARFGEDLFLDDPSFGQIPLVALENYTNRSESILSCRLS 158

Query: 227 DKIALILGAEGKGLRPKTQETAT----------SMAHLHMPGIIKALNVSNAAAVALYIT 276
               +++G E  G+  K  +              + ++   G I +LNV  +  +AL+  
Sbjct: 159 SPARIVVGHENNGVSGKYIDKMDVSGGKGCRAERVVYVPQYGTISSLNVVTSMGIALFYA 218


>gi|90406922|ref|ZP_01215113.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
           sp. CNPT3]
 gi|90311964|gb|EAS40058.1| putative RNA methyltransferase, TrmH family protein [Psychromonas
           sp. CNPT3]
          Length = 248

 Score = 48.9 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 25/150 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS---ASGALEHIP-YIR 191
           ++L   + P NIG+  R+        ++        E  V  KS   ++GA + +  + R
Sbjct: 7   IILIGTSHPGNIGSAARAMKTMGLSNLVL----VAPECEVDGKSIALSAGASDVLKNHQR 62

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGK 238
            + L +A+      G   IG S+  +      +                 +A++ G E  
Sbjct: 63  FATLEEAIA---DCGL-VIGASARPRTLDWPMLDPREMGEKAVIEGAKYPVAIVFGRENS 118

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           GL             +       +LN++ A
Sbjct: 119 GLTNDELHKCHFHVFIPANPEYSSLNLAMA 148


>gi|89094499|ref|ZP_01167438.1| putative tRNA/rRNA methyltransferase (trmH family protein)
           [Oceanospirillum sp. MED92]
 gi|89081235|gb|EAR60468.1| putative tRNA/rRNA methyltransferase (trmH family protein)
           [Oceanospirillum sp. MED92]
          Length = 241

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +VL +   P NIGA  R+        +   +      S      A+GA + +   I +S 
Sbjct: 7   VVLINTFHPGNIGAAARAMKNMGLSKLYLVEPEEFP-SEEADSRAAGAKDLLDSAIVVST 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGL 240
           L +A+          IG S+ +K+  +  + N +              +AL+ G E  GL
Sbjct: 66  LEEAISDCQ----LVIGTSARTKRTFDLPLLNARKGAERVVAEAQSGEVALVFGRETMGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                +      ++        LNVS A  +  Y 
Sbjct: 122 HNHELQQCNFHVYIPANPEYPVLNVSQAIQLLCYE 156


>gi|295097922|emb|CBK87012.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSISEAEQAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|291287787|ref|YP_003504603.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884947|gb|ADD68647.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 169

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 4/149 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  V      I+  K     +   + ++     +++  +++ +L
Sbjct: 4   IVLYEPEIPQNTGNIGRFCVGTESRLILVGKLGFSLDDKHVKRAGLDYWQNVNLMQLPSL 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKT-QETATSMAH 253
               ++  +       LS  + +   +   +ND + LI G E  GL     ++   S+  
Sbjct: 64  EAFYEEFPNDKHPYAFLSKFASRVYTEIPHENDNLMLIFGRETSGLPESVEKDHPDSLFR 123

Query: 254 LHMPGIIKALNVSNAAAVALY--ITQNHF 280
           +   G +++ N+SN+ A+  +  I +  F
Sbjct: 124 IPATGKVRSFNLSNSVALVGFDIIRRRGF 152


>gi|109898550|ref|YP_661805.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica
           T6c]
 gi|109700831|gb|ABG40751.1| tRNA/rRNA methyltransferase (SpoU) [Pseudoalteromonas atlantica
           T6c]
          Length = 198

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 14/156 (8%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            V+   + + + +   P N+G+ILR+A  +  D I  T        A    + +  L +I
Sbjct: 24  EVKKDSVALCIINPKSPQNMGSILRAAGCYGADTIYYTGERYARARAFNTDTKNVGL-NI 82

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
           P  +++    A       G   + +   +   PL           + G E   +     +
Sbjct: 83  PVEQVTTPEPA------PGIAMVAVELVEGATPLPHFRHPKHAYYVFGPEDGSIEQSVLD 136

Query: 247 TATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
               + ++   G +   N++    V LY   +  AK
Sbjct: 137 RCQHVVYVPTKGCM---NLAATVNVLLY---DRLAK 166


>gi|218531400|ref|YP_002422216.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           chloromethanicum CM4]
 gi|218523703|gb|ACK84288.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           chloromethanicum CM4]
          Length = 245

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIG   R+   F    +      +      + ++ASGA   +   ++ +
Sbjct: 5   VVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVYA 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------------KNDKIALILGAEGKG 239
            L +A+  +H      +  ++  +  +++                + +++ L+ G E  G
Sbjct: 65  TLPEAIADLH----FLLATTARERGQMKRVFAPEDAMAATAERIGRGERVGLMFGRERVG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           L       A ++    +     +LN++ A  V L  Y  + 
Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQA--VLLMGYEWRR 159


>gi|217972788|ref|YP_002357539.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS223]
 gi|217497923|gb|ACK46116.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS223]
          Length = 249

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 17/165 (10%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKS- 179
            +   +  S + + L +   P N+G I+R++  +  DG+  T R    +    AV     
Sbjct: 35  ASEQTLDASAVFIGLVNPKTPVNVGGIMRASGCYGVDGVFYTGRRYELAARSGAVQYHVD 94

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGK 238
              A E IP   +++L  ++        + I +       PL   +   K   + G E  
Sbjct: 95  TKDAGERIPLTGVTSLLASIP----ADTKLICVDLVVGATPLPDFVHPAKAFYVFGPE-D 149

Query: 239 G-LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           G +  +  + A ++ ++   G +   N++ +  V LY   +  AK
Sbjct: 150 GTIGQEIIDKADAVVYVPTVGCM---NLAASVNVLLY---DRLAK 188


>gi|110633621|ref|YP_673829.1| RNA methyltransferase [Mesorhizobium sp. BNC1]
 gi|110284605|gb|ABG62664.1| RNA methyltransferase, TrmH family, group 1 [Chelativorans sp.
           BNC1]
          Length = 262

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 28/165 (16%)

Query: 127 DAVRNSQLLMVLDHVNDPH---NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           D +     +++++    P    NIG + R+   F    +   K      +     +AS A
Sbjct: 9   DLLAEGPAIVLVE----PQLGENIGMVARAMANFGLGELRLVKPRDGWPNEKARAAASRA 64

Query: 184 LEHIPYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPL--------------EQEIKNDK 228
              I   ++  +L  A+  ++         ++  +                  +     +
Sbjct: 65  DHVIDATKVFDDLAGAVADLN----FLYATTARPRDNFKPVRGPVEATLQLRARHAAGQR 120

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             ++ G E  GL  +    A  +    +     +LNV+ A  V L
Sbjct: 121 TGILFGRERWGLTNEEVAVADEIVTFPVNPAFASLNVAQA--VLL 163


>gi|312884217|ref|ZP_07743926.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367990|gb|EFP95533.1| RNA methyltransferase, TrmH family protein [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 241

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +VL   +   NIG+  R+         ++   + S  E  +   S +G +     I +S+
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLTNLVLVDPQCSVDEQTMALASGAGEIAQNAKI-VSS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           L +A+          +G S+ S+                 +E ++  +AL+ G E  GL 
Sbjct: 66  LDEAVSDCQ----LVVGSSARSRTLEWPMLEPRECGRKFVEEGESSPVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +       +       +LN++ A
Sbjct: 122 NEELQKCHFHVCIPANPEYSSLNLAMA 148


>gi|240139894|ref|YP_002964371.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
 gi|240009868|gb|ACS41094.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens AM1]
          Length = 245

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIG   R+   F    +      +      + ++ASGA   +   ++ +
Sbjct: 5   VVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVYA 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------------KNDKIALILGAEGKG 239
            L +A+  +H      +  ++  +  +++                + ++I L+ G E  G
Sbjct: 65  TLPEAIADLH----FLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           L       A ++    +     +LN++ A  V L  Y  + 
Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQA--VLLMGYEWRR 159


>gi|86145581|ref|ZP_01063911.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
 gi|85836552|gb|EAQ54678.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
          Length = 242

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 21/148 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V  ++ + A         + +
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVL----VDPQCEVDEQTLALAAGAGDIAENATI 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGL 240
              L + +   G   +G S+ S+  LE  +                  +AL+ G E  GL
Sbjct: 63  VSTLDEAVKDCGL-VVGSSARSRT-LEWPMLEPRECGQKFAVEGQKHPVALVFGRERTGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNA 268
                +       +       +LN++ A
Sbjct: 121 TNDELQKCHFHVCIPANPEYSSLNLAMA 148


>gi|297623111|ref|YP_003704545.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297164291|gb|ADI14002.1| RNA methyltransferase, TrmH family, group 1 [Truepera radiovictrix
           DSM 17093]
          Length = 248

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 15/145 (10%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-R 191
            L +VL    DP N+GA  R+   F    +         +  +  ++ + A      + R
Sbjct: 13  ALRIVLVRPKDPANVGAAARAMKNFGLGDLHL----VAPQRPIGRRAYALASHAQDVLQR 68

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSK------KPLE--QEIKNDKIALILGAEGKGLRPK 243
                   + +       +G ++  +       P E  Q +  + +A++ G E  GL   
Sbjct: 69  AVEHESVAEALKGCTL-VLGTTARERREGRMYTPREAAQTLTPEGLAVLFGPEDFGLSND 127

Query: 244 TQETATSMAHLHMPGIIKALNVSNA 268
             +       +       +LN++ A
Sbjct: 128 DLKHCQGYIRIPTAAYA-SLNLAQA 151


>gi|194442269|ref|YP_002041807.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194400932|gb|ACF61154.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 243

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|78213466|ref|YP_382245.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
 gi|78197925|gb|ABB35690.1| RNA methyltransferase TrmH, group 1 [Synechococcus sp. CC9605]
          Length = 243

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 25/155 (16%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRISNLTDALQKM 202
           P NIG++ R    F    +          S      A  G       + + +L  A+   
Sbjct: 8   PLNIGSVARLCANFGVSELRLVAPRCDHLSDEAMLMAVHGQALLQAAVVVPDLLTAINDC 67

Query: 203 HSWGFQTIGLSS---DSKKPLEQ---------------EIKNDKIALILGAEGKGLRPKT 244
                +T+G        + PL+                      +A++ G E +GL    
Sbjct: 68  R----RTVGSCGRLDHGEIPLQTPEQALGWLLASDGSSSSSGAPMAMVFGREDRGLSNSE 123

Query: 245 QETATSMAHLHMPGII-KALNVSNAAAVALYITQN 278
                 +  L   G    +LN+S+A AV L+    
Sbjct: 124 LRLCQRVLCL-QSGEAYPSLNLSHAVAVVLHELAR 157


>gi|188582582|ref|YP_001926027.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           populi BJ001]
 gi|179346080|gb|ACB81492.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           populi BJ001]
          Length = 245

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIG   R+   F    +      +      + ++ASGA   +   ++ +
Sbjct: 5   VVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDRAKVFA 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------------KNDKIALILGAEGKG 239
            L +A+  +H      +  ++  +  +++                + +++ L+ G E  G
Sbjct: 65  TLAEAVGDLHG----LLATTARERGQMKRVFAPEEAMTATADRIGRGERVGLMFGRERVG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           L       A ++    +     +LN++ A  V L  Y  + 
Sbjct: 121 LSNDEVSLADAIVTFPVTEEFPSLNLAQA--VLLMGYEWRR 159


>gi|84387612|ref|ZP_00990629.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|218708627|ref|YP_002416248.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
 gi|84377457|gb|EAP94323.1| RNA methyltransferase, TrmH family [Vibrio splendidus 12B01]
 gi|218321646|emb|CAV17598.1| RNA methyltransferase, TrmH family [Vibrio splendidus LGP32]
          Length = 242

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 21/148 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V  ++ + A         + +
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVL----VDPQCEVDEQTLALAAGAGDIAENATI 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGL 240
              L + +   G   +G S+ S+  LE  +                  +AL+ G E  GL
Sbjct: 63  VSTLDEAVKDCGL-VVGSSARSRT-LEWPMLEPRECGQKFAVEGQKHPVALVFGRERTGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNA 268
                +       +       +LN++ A
Sbjct: 121 TNDELQKCHFHVCIPANPEYSSLNLAMA 148


>gi|302378497|gb|ADL32329.1| WemW [Proteus mirabilis]
          Length = 167

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 47/161 (29%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     +  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHDY 63

Query: 196 TDALQK-------------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L+                 +   T G  + S    +         L+ G E +GL P
Sbjct: 64  YAFLESEGLSPDNVQSPTGARLFALTTKGTPAHSNVSYQDGDY-----LLFGPETRGLPP 118

Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +         + M    +++N+SN  AV ++       
Sbjct: 119 YVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQLG 159


>gi|197287001|ref|YP_002152873.1| methyltransferase [Proteus mirabilis HI4320]
 gi|227354755|ref|ZP_03839173.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|194684488|emb|CAR46253.1| putative methyltransferase [Proteus mirabilis HI4320]
 gi|227165198|gb|EEI50026.1| SpoU family rRNA methyltransferase [Proteus mirabilis ATCC 29906]
 gi|302378451|gb|ADL32286.1| WemF [Proteus mirabilis]
 gi|302378467|gb|ADL32301.1| WemO [Proteus mirabilis]
          Length = 167

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 47/161 (29%), Gaps = 20/161 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +        +   L ++     E     +  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFHLHLIQPLGFTWDDKRLRRAGLDYREFADIKQHHDY 63

Query: 196 TDALQK-------------MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L+                 +   T G  + S    +         L+ G E +GL P
Sbjct: 64  YAFLESEGLSPDNAQSPTGARLFALTTKGTPAHSNVSYQDGDY-----LLFGPETRGLPP 118

Query: 243 KTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
              +         + M    +++N+SN  AV ++       
Sbjct: 119 YVLDNMPTQQKIRVPMLADSRSMNLSNTVAVVVFEAWRQLG 159


>gi|171742258|ref|ZP_02918065.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC
           27678]
 gi|283456632|ref|YP_003361196.1| RNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|306822199|ref|ZP_07455581.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|309802286|ref|ZP_07696394.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium
           dentium JCVIHMP022]
 gi|171277872|gb|EDT45533.1| hypothetical protein BIFDEN_01364 [Bifidobacterium dentium ATCC
           27678]
 gi|283103266|gb|ADB10372.1| RNA methyltransferase [Bifidobacterium dentium Bd1]
 gi|304554581|gb|EFM42486.1| TrmH family RNA methyltransferase [Bifidobacterium dentium ATCC
           27679]
 gi|308221169|gb|EFO77473.1| RNA methyltransferase, TrmH family, group 2 [Bifidobacterium
           dentium JCVIHMP022]
          Length = 228

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 18/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   +  + +Q M 
Sbjct: 84  PGNTGSAIRLCAVTGTILHLVEPLGFNLRDTKLRRAGLDYHDMAHVVLHPDFDNLVQSMP 143

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GK---------GLRPKTQETATSMAH 253
           +   + I  ++ + K   +        L+ G E G          G  P   E       
Sbjct: 144 NS--RIIAFTAHATKLYTEIEYKPTDILLFGPEPGDIPDPMDIMAG--PHVAEQ----VR 195

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           L M   +++LN++N A++A+Y       
Sbjct: 196 LPMRPSLRSLNLTNCASIAIYEAWRQLN 223


>gi|170752133|ref|YP_001758393.1| RNA methyltransferase [Methylobacterium radiotolerans JCM 2831]
 gi|170658655|gb|ACB27710.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           radiotolerans JCM 2831]
          Length = 261

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 23/183 (12%)

Query: 104 IVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGII 163
           +  ++A  QG A E AP     L       +++V        NIG   R+   F    + 
Sbjct: 1   MTSRDA--QGDAPEVAPRKVTELPPGIAPAVILV--EPQLAENIGMTARAMANFGLSELR 56

Query: 164 TTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ 222
                +      + ++ASGA   +    I  ++ +A+          +  ++  +  +++
Sbjct: 57  LVNPKNGWPKKGVREAASGATHVLDAAAIYGSVAEAIADCQ----YVLATTARERGQMKR 112

Query: 223 EIKND------------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAA 270
               +            + A++ G E  GL       A ++    +     +LN++ A  
Sbjct: 113 VFAPEEAMGELVAREGQRTAVMFGRERVGLTNDEVSLADAIVTFPVSPDFPSLNLAQA-- 170

Query: 271 VAL 273
           V L
Sbjct: 171 VLL 173


>gi|91794831|ref|YP_564482.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans
           OS217]
 gi|91716833|gb|ABE56759.1| RNA methyltransferase TrmH, group 2 [Shewanella denitrificans
           OS217]
          Length = 153

 Score = 48.9 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 4/113 (3%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N G I+R          +        E   L ++     +     R  N  D LQ M   
Sbjct: 14  NTGNIIRLCANNGSHLHLIEPLGFDLEEKKLRRAGLDYADLANVTRHKNYDDFLQAM--A 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAHLHM 256
           G + +  ++   +P  +        L+ G E +GL       A       + M
Sbjct: 72  GKRIMVCTTKGSRPHTELEFAKDDVLLFGPETRGLPMDIINAAPLEQRLRIPM 124


>gi|270346815|pdb|3KTY|A Chain A, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
 gi|270346816|pdb|3KTY|B Chain B, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
 gi|270346817|pdb|3KTY|C Chain C, Crystal Structure Of Probable Methyltransferase From
           Bordetella Pertussis Tohama I
          Length = 173

 Score = 48.9 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRISN-LTDALQ 200
           P N+G+  R+        ++      P  +        ASGAL+ +    + + L +AL 
Sbjct: 21  PGNVGSAARAIKTXGFGELVLVAPRFPDXTAQPEAVALASGALDVLERAAVHDTLEEALA 80

Query: 201 ----------KMHSWGFQ---TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
                     ++   G         +  +++ L+       +A++LG E  GL     E 
Sbjct: 81  PVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGV-VAIVLGTERAGLTNAQIEL 139

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + H+       +LNV+ A  +A +  +
Sbjct: 140 CHRICHIPANPQYSSLNVAQALQLAAWELR 169


>gi|254562318|ref|YP_003069413.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
 gi|254269596|emb|CAX25567.1| tRNA/rRNA methyltransferase [Methylobacterium extorquens DM4]
          Length = 245

 Score = 48.9 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 59/161 (36%), Gaps = 23/161 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIG   R+   F    +      +      + ++ASGA   +   ++ +
Sbjct: 5   VVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVYA 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------------KNDKIALILGAEGKG 239
            L +A+  +       +  ++  +  +++                + ++I L+ G E  G
Sbjct: 65  TLPEAIADLQ----FLLATTARERGQMKRVFAPEDAMTATAERIGRGERIGLMFGRERVG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           L       A ++    +     +LN++ A  V L  Y  + 
Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQA--VLLMGYEWRR 159


>gi|163852560|ref|YP_001640603.1| RNA methyltransferase [Methylobacterium extorquens PA1]
 gi|163664165|gb|ABY31532.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           extorquens PA1]
          Length = 245

 Score = 48.9 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 23/161 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIG   R+   F    +      +      + ++ASGA   +   ++ +
Sbjct: 5   VVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATYVLDGAKVYA 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------------KNDKIALILGAEGKG 239
            L +A+  +H      +  ++  +  +++                + ++I L+ G E  G
Sbjct: 65  TLPEAIADLH----FLLATTARERGQMKRVFAPEDALTATAERIGRGERIGLMFGRERVG 120

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           L       A ++    +     +LN++ A  V L  Y  + 
Sbjct: 121 LSNDEVSLADAIVTFPVTDEFPSLNLAQA--VLLMGYEWRR 159


>gi|187479053|ref|YP_787077.1| tRNA/rRNA methyltransferase [Bordetella avium 197N]
 gi|115423639|emb|CAJ50179.1| putative tRNA/rRNA methyltransferase [Bordetella avium 197N]
          Length = 267

 Score = 48.9 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 21/159 (13%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIR-IS 193
           ++   + P N+G+  R+        ++      P  +        ASGA + +   R  +
Sbjct: 11  IMVQPSHPGNVGSAARAIKTMGFAELVLVDPRLPDMTHQPEAVALASGAADVLENARICA 70

Query: 194 NLTDALQ----------KMHSWG-----FQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            L +AL           ++   G      +       S++ L+Q   +  +A++LG E  
Sbjct: 71  TLEEALAPVTLAFALTARVRDLGPPPCDIRQAATL--SREHLDQ-KPDGCVAIVLGTERS 127

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +       + H+       +LNV+ A  +A +  +
Sbjct: 128 GLTNEQIGLCQRICHIPANPEYSSLNVAQALQLAAWELR 166


>gi|237732512|ref|ZP_04562993.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
 gi|226908051|gb|EEH93969.1| tRNA Cm32/Um32 methyltransferase [Citrobacter sp. 30_2]
          Length = 243

 Score = 48.9 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGSAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEATNSPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVR 157


>gi|126174955|ref|YP_001051104.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155]
 gi|125998160|gb|ABN62235.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS155]
          Length = 254

 Score = 48.9 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKS-ASGALEHIPYIRISNLTDAL 199
           P N+G I+R++  +  DG+  T R    +    AV        A E IP   +++L  ++
Sbjct: 55  PVNVGGIMRASGCYGVDGVFYTGRRYELAARSGAVQYHVDTKDAGERIPLTGVTSLLASI 114

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMP 257
                   + I +       PL   +   K   + G E  G +  +  + A ++ ++   
Sbjct: 115 P----ADTKLICVDLVVGATPLPDFVHPAKAFYVFGPE-DGTIGQEIIDKADAVVYVPTV 169

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G +   N++ +  V LY   +  AK
Sbjct: 170 GCM---NLAASVNVLLY---DRLAK 188


>gi|259506650|ref|ZP_05749552.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
 gi|259165848|gb|EEW50402.1| SpoU rRNA methylase family protein [Corynebacterium efficiens
           YS-314]
          Length = 133

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 5/130 (3%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
                    +            L ++     +       +N+ D    +     +    +
Sbjct: 2   CAGTGAHLHLVEPLGFDLTEKHLRRAGLDYHDLADVTVHANIEDCFGALPG---RIFAFT 58

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATSMAHLHMPGIIKALNVSNAAAV 271
           + +             AL+ G E  GL  +       T+   + M    +++N+SN+AAV
Sbjct: 59  TQATGWFTDITYQPGDALLFGTEPTGLPHEHIIHPRVTAEVRIPMLEGRRSMNLSNSAAV 118

Query: 272 ALYITQNHFA 281
           A Y       
Sbjct: 119 ATYEAWRQLG 128


>gi|254424488|ref|ZP_05038206.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7335]
 gi|196191977|gb|EDX86941.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp. PCC
           7335]
          Length = 304

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 59/183 (32%), Gaps = 30/183 (16%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            L   P     L  +R     +VL     P N+G++ R    F    +           A
Sbjct: 4   VLSKQPPTQADLTQIR-----IVLVAPAGPLNVGSVARVMKNFGLSQLYLVDPQCDYLGA 58

Query: 175 VLAKSASGALEHIPYIR-ISNLTDALQ--------KMHSWGFQT------IGL----SSD 215
              + A  A + +   + +  +  AL            + GF          L    +S+
Sbjct: 59  EALQMAVHADDVLKTAQIVPTIPKALAGCEYAIATTARTRGFNVPLDPPETALPNLLTSN 118

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++P+ Q       AL+ G E +GL  +    A     +       ALN++ A  +  Y 
Sbjct: 119 PQQPIRQ------TALLFGPEDRGLSNQELIYAQQFLKIPTSDAYSALNLAQAVTICCYE 172

Query: 276 TQN 278
              
Sbjct: 173 LSR 175


>gi|148975164|ref|ZP_01812088.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145965088|gb|EDK30338.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 171

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S + + L +   P N+GA++R+A  +  D +    +Y+       AK  +        I
Sbjct: 3   KSHVTIGLTNPKSPTNVGAVMRAAGCYQVDEV----KYTGQRYEKAAKFHTDTKSATRTI 58

Query: 191 RISNLTDALQKMH-SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            ++ +   L  +        + L+ +   PL +    +    I G E   +     + A 
Sbjct: 59  PLTGVESFLDNLDPETKIVCVELA-EGATPLPRFKHPENAIYIFGPEDGSITQDVADRAD 117

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + ++   G +   N++    V LY   +  AK
Sbjct: 118 HVVYVPTVGCM---NLAATVNVLLY---DRLAK 144


>gi|304314187|ref|YP_003849334.1| rRNA methylase [Methanothermobacter marburgensis str. Marburg]
 gi|302587646|gb|ADL58021.1| predicted rRNA methylase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 240

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 32/169 (18%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            + +  + +V      P N+G + R+   F    +I     S          A  A + +
Sbjct: 5   ELLSRNIGVVFVEPETPGNVGFLARAMKNFGLQNLILINPCS--LEDEAYYQAMHARDLV 62

Query: 188 -PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPL-------------EQEIKNDKIALIL 233
              I    L + ++ +    F  +G +                         + +  ++ 
Sbjct: 63  EDAIIYQTLDEMIENL-EPDF-LVGTTGVPGGSYNVDRIPLRPSQLASAINPSSRTFILF 120

Query: 234 GAEGKGLRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYI 275
           G EG GL  +       +  +        M       N+++AAA+  Y 
Sbjct: 121 GREGDGLSNRELGLCDMVVSIPTDREYPIM-------NITHAAAIIFYE 162


>gi|300715247|ref|YP_003740050.1| RNA methyltransferase [Erwinia billingiae Eb661]
 gi|299061083|emb|CAX58190.1| RNA methyltransferase [Erwinia billingiae Eb661]
          Length = 233

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 44/158 (27%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +  ++L     P N+GA  R+      D +                 A GA E +     
Sbjct: 2   RFPLILVSPRRPENVGAAARAMKTMGFDELRIVN-SQAHLEPAARWVAHGAGEILD--NA 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKG 239
           ++       +    F     +    K                        AL+ G E  G
Sbjct: 59  THWDSLDAALADIDFSIATTARSRAKFRYYATPQQVQSLLEEKQQWVQSAALVFGREDTG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +       +  + M     +LN+  A  V +Y  Q
Sbjct: 119 LTNEELALVDVLTGIPMAADYPSLNLGQA--VMVYCYQ 154


>gi|227514833|ref|ZP_03944882.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC
           14931]
 gi|227086823|gb|EEI22135.1| SpoU family RNA methyltransferase [Lactobacillus fermentum ATCC
           14931]
          Length = 168

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 16/145 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+         +       ++   + ++     + +  +   +L   L  + 
Sbjct: 13  PANTGNIARTCAGTDTVLHLIKPLGFSTDDKHMKRAGLDYWDKVKVVYHDDLVAFLDSID 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPKTQ----ETATSMAHLH 255
                    S  +++   +      IA     + G E  GL         E A     + 
Sbjct: 73  LDHLYI--ASKFAERDYSEVDYT--IAGDHYFLFGKETTGLPEGFMRRYPEKA---IRIP 125

Query: 256 MP-GIIKALNVSNAAAVALYITQNH 279
                I+ALN+SN AA+ +Y     
Sbjct: 126 QDDNNIRALNLSNTAAIVIYEALRQ 150


>gi|294942244|ref|XP_002783448.1| hypothetical protein Pmar_PMAR006976 [Perkinsus marinus ATCC 50983]
 gi|239895903|gb|EER15244.1| hypothetical protein Pmar_PMAR006976 [Perkinsus marinus ATCC 50983]
          Length = 156

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--SAVLAKSASGALEHIP 188
           N Q +++LD V  P NI  I+R + AF    +   K     E     L  S    L   P
Sbjct: 29  NPQTVVMLDGVQYPGNIARIIRYSHAFGVSALALEKDTITEEALERALEYSHYSTLGGPP 88

Query: 189 YIRISNLTDALQKMHSW-GFQTIGLSSDSKKP 219
                +    ++ +    GF    L +  +  
Sbjct: 89  ICNGLDSLQLIEALQQNYGFSVFALENKEEAS 120


>gi|148979594|ref|ZP_01815599.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
 gi|145961679|gb|EDK26976.1| RNA methyltransferase, TrmH family protein [Vibrionales bacterium
           SWAT-3]
          Length = 242

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 21/148 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V  ++ + A         + +
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVL----VDPQCEVDEQTLALAAGAGDIAENAVI 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGL 240
              L + +   G   +G S+ S+  LE  +                  +AL+ G E  GL
Sbjct: 63  VSTLDEAVKDCGL-VVGSSARSRT-LEWPMLEPRECAEKFAVEGQKHPVALVFGRERTGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNA 268
             +  +       +       +LN++ A
Sbjct: 121 TNEELQKCHYHVCIPANPEYSSLNLAMA 148


>gi|283832087|ref|ZP_06351828.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
           youngae ATCC 29220]
 gi|291071712|gb|EFE09821.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Citrobacter
           youngae ATCC 29220]
          Length = 243

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGSAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEATNSPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVISYEVR 157


>gi|206578299|ref|YP_002237115.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|288934076|ref|YP_003438135.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|290508272|ref|ZP_06547643.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
 gi|206567357|gb|ACI09133.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|288888805|gb|ADC57123.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|289777666|gb|EFD85663.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. 1_1_55]
          Length = 244

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEGQHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  V  Y  +
Sbjct: 123 EELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|87302133|ref|ZP_01084958.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
 gi|87283058|gb|EAQ75014.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. WH 5701]
          Length = 262

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 25/169 (14%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +  L +VL     P N+G++ R    F+   +               + A      +   
Sbjct: 9   HPGLALVLVEPAGPLNVGSVARLCANFALQDLRLVAPRCDHLGEEARRMAVHGGALLERA 68

Query: 191 R-ISNLTDALQKMHSWGFQTIGLSS--DSKKP------------LEQEIKNDKI------ 229
           +   +L  A+        + +  S   DS+              LE +            
Sbjct: 69  QLYPDLAAAIAD----RTRVVAASGRVDSQAVPIEGPAEAIPWLLEHQAGPGPSERPSAP 124

Query: 230 ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           AL+ G E +GL       A  +  +       +LN+S+A A+ L+  + 
Sbjct: 125 ALVFGREDRGLSTDELLQAGRILRISTDDGYTSLNLSHAVAITLHELRR 173


>gi|86157540|ref|YP_464325.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774051|gb|ABC80888.1| tRNA/rRNA methyltransferase, SpoU [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 269

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 25/166 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDG-IITTKRYSPSESAVLAKSASGALEHI------- 187
           +VL       N+GA  R    F     ++                A+ A + +       
Sbjct: 8   LVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAATARDDVLARARRM 67

Query: 188 -----PYIRISNLTDALQKMHSWGFQTIGLSSDS------------KKPLEQEIKNDKIA 230
                  +  + + D L+          G +S +               L +     ++A
Sbjct: 68  ARKASDLLDGAEIHDDLRAAIGPATWVCGTTSRAVEGRPWLEPRGLAAELVRRSAQGEVA 127

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           ++ G E +GL     E   ++  +       ++N++ A AV  Y  
Sbjct: 128 VVFGEERRGLSDAELELCQAVCTIPTAAAYDSMNLAQAVAVISYEV 173


>gi|329766018|ref|ZP_08257579.1| hypothetical protein Nlim_1365 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137473|gb|EGG41748.1| hypothetical protein Nlim_1365 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 176

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 12/133 (9%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            L+ VR  Q L+  D V     +  + R   AF C  I  T+  +P     + K      
Sbjct: 2   VLEVVRIGQRLVRDDRVTTH--VALVAR---AFGCTKIFMTE-VNPEIKDTVEKINKTWG 55

Query: 185 EHIPYIRISNLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDK-IALILGAEGKGLR 241
                  I N    ++K     ++ + L+   +S   ++++++ +K + +++GAE   + 
Sbjct: 56  GDFVVEFIDNWKSIVKKKKEE-YKIVHLTMYGESIDDVDEQLRKEKNLLIVVGAEK--VP 112

Query: 242 PKTQETATSMAHL 254
            +  E A     +
Sbjct: 113 REIYELADYNISI 125


>gi|148260405|ref|YP_001234532.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
 gi|146402086|gb|ABQ30613.1| tRNA/rRNA methyltransferase (SpoU) [Acidiphilium cryptum JF-5]
          Length = 257

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 17/159 (10%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---SESAVLAKSASGALEHI 187
           +   +++L       NIG++ R   A    G+   +  +P          ++ASGA   +
Sbjct: 14  DPSPVIILVRPQLAENIGSVAR---AMGNGGLFHLRLVAPRDGWPQDRAMRTASGAYRIL 70

Query: 188 PYIRISNL-TDALQKMHS---------WGFQTIGLSSDSKKPLEQEIKND-KIALILGAE 236
               + +   DA+  +H             + +  +  +   L +      K  ++ G E
Sbjct: 71  EAATVHDTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCGILFGPE 130

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             GL       A S+    +     +LN++ A  V  Y 
Sbjct: 131 RAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYE 169


>gi|315226148|ref|ZP_07867936.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
 gi|315120280|gb|EFT83412.1| TrmH family RNA methyltransferase [Parascardovia denticolens DSM
           10105]
          Length = 238

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +        +   L ++     +    +   +  + ++ M 
Sbjct: 94  PGNTGSAIRLCAITGSVLHLVEPLGFNLKDTKLRRAGLDYHDMTHVVIHPDFDNLIESMP 153

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRPKTQETAT----SMAHLHMPG 258
               + I  ++ +     +        L+ G E G  +       A           M  
Sbjct: 154 DS--RIISFTAQATTLYTEVEYRPTDILLFGPEPGD-IPDPMDIMAGPHIYQQVRFPMRP 210

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++ALY       
Sbjct: 211 SLRSLNLANCASIALYEAWRQMG 233


>gi|294786566|ref|ZP_06751820.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
 gi|294485399|gb|EFG33033.1| RNA methyltransferase, TrmH family [Parascardovia denticolens
           F0305]
          Length = 231

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +        +   L ++     +    +   +  + ++ M 
Sbjct: 87  PGNTGSAIRLCAITGSVLHLVEPLGFNLKDTKLRRAGLDYHDMTHVVIHPDFDNLIESMP 146

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRPKTQETAT----SMAHLHMPG 258
               + I  ++ +     +        L+ G E G  +       A           M  
Sbjct: 147 DS--RIISFTAQATTLYTEVEYRPTDILLFGPEPGD-IPDPMDIMAGPHIYQQVRFPMRP 203

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++ALY       
Sbjct: 204 SLRSLNLANCASIALYEAWRQMG 226


>gi|153001281|ref|YP_001366962.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS185]
 gi|151365899|gb|ABS08899.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS185]
          Length = 241

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 25/176 (14%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E A     +   +  S + + L +   P N+G I+R++  +  DG+  T R       + 
Sbjct: 11  EVANTELASEQMLDTSAVFIGLVNPKTPVNVGGIMRASGCYGVDGVFYTGRR----YELA 66

Query: 177 AKSASG--------ALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKND 227
           A+S +         A E IP   +++L  A+        Q I +       PL   +   
Sbjct: 67  ARSGAAQYHVDTKDAGERIPLTGVTSLLAAIP----ADTQLICVDLVVGATPLPDFVHPA 122

Query: 228 KIALILGAEGKG-LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           K   + G E  G +  +  + A ++ ++   G +   N++ +  V LY   +  AK
Sbjct: 123 KAFYVFGPE-DGTIGQEIIDKANAVVYVPTVGCM---NLAASVNVLLY---DRLAK 171


>gi|116252374|ref|YP_768212.1| rRNA methylase family protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257022|emb|CAK08116.1| putative rRNA methylase family protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 276

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L       NIG + R+   F    +          +     +AS A   I   ++   
Sbjct: 17  IILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIEETKVYDT 76

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQEI-----------KNDKIALILGAEGKGL 240
           L  A+  ++         ++   D  KP+   +             +   ++ G E  GL
Sbjct: 77  LEQAVADLN----FVYATTARERDGYKPVRSPVIAAETLRARFRAGEGTGILFGRERWGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +    A  +    +     +LN++ A  V L
Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|254461267|ref|ZP_05074683.1| tRNA/rRNA methyltransferase [Rhodobacterales bacterium HTCC2083]
 gi|206677856|gb|EDZ42343.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium HTCC2083]
          Length = 247

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 15/165 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
              Q   VL       NIGA  R+   FS D +          +      ASGA   +  
Sbjct: 4   EQPQPSFVLVRPQMGENIGAASRAMWNFSLDRMRLVAPRDGWPNPKAVAMASGAGRLLDE 63

Query: 190 IR-ISNLTDALQKM--------HSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGK 238
            +      +A++             G      S +    L  E+  + +K+A++ G E  
Sbjct: 64  AQLFQTTAEAVEDCSYVFATTARQRGLTKPAFSPEGAMKLAAEKIAQGEKVAVLFGPERA 123

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
           G+       A ++ ++ +     +LN++    V L  Y  Q    
Sbjct: 124 GMENDDIARANAVINVPVNSEFGSLNLAQC--VLLIGYEWQRQVG 166


>gi|328543187|ref|YP_004303296.1| tRNA/rRNA methyltransferase protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412933|gb|ADZ69996.1| Probable tRNA/rRNA methyltransferase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 289

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 55/163 (33%), Gaps = 13/163 (7%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           AV      ++L       NIG   R+   F    +          S     +AS A   I
Sbjct: 13  AVDIRPPAVILCEPQLGENIGTAARAMANFGLVDLRLVNPRDGWPSDKARAAASRADHVI 72

Query: 188 PYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL-----------ILGA 235
             +++  +L  A+  + S+ F T   S +  KP+    +     +           + G 
Sbjct: 73  DAVQVFDSLEAAVADL-SFVFATTARSREVAKPVRGPDEAAATVVGYGATGLATGYLFGR 131

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E  GL       A  +  L +     +LN++ A  V  Y  + 
Sbjct: 132 ERWGLNNDEVALADEIVTLPVDPAFASLNIAQAVLVCAYEWRK 174


>gi|326403597|ref|YP_004283679.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
 gi|325050459|dbj|BAJ80797.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase [Acidiphilium
           multivorum AIU301]
          Length = 257

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 17/159 (10%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP---SESAVLAKSASGALEHI 187
           +   +++L       NIG++ R   A    G+   +  +P          ++ASGA   +
Sbjct: 14  DPSPVIILVRPQLAENIGSVAR---AMGNGGLFHLRLVAPRDGWPQDRAMRTASGAYRIL 70

Query: 188 PYIRISNL-TDALQKMHS---------WGFQTIGLSSDSKKPLEQEIKND-KIALILGAE 236
               + +   DA+  +H             + +  +  +   L +      K  ++ G E
Sbjct: 71  EAATVHDTVADAVGDLHRVFATCPRPRHIVKPLLTARGAAAELREIGARGLKCGILFGPE 130

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             GL       A S+    +     +LN++ A  V  Y 
Sbjct: 131 RAGLDNDDIACADSLIRYPLNPRFMSLNLAQAVMVMAYE 169


>gi|289803388|ref|ZP_06534017.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 88

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 258 GIIKALNVSNAAAVALYITQNHF 280
           G++++LNVS A+A+ LY  Q   
Sbjct: 2   GMVQSLNVSVASALILYEAQRQR 24


>gi|213613094|ref|ZP_03370920.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 160

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|83858779|ref|ZP_00952301.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853602|gb|EAP91454.1| spoU rRNA methylase family protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 247

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 10/153 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           + +L       NIGA  R    F    +          +      A+ +           
Sbjct: 8   VFILVEPQMGENIGAACRVMGNFGIPELRIVNPRDGWPNPKAVSMATSSPVLDDARVFDT 67

Query: 195 LTDALQKMH---------SWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKT 244
           L +A+                 + +  + +    +        ++ ++ GAE  GL    
Sbjct: 68  LEEAVADCQLLFASTAQPRNMVKPVFTAREGMAEIRGHVEAGQRVGVLFGAEKSGLPNAA 127

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + ++  L +     +LN++ A  V  +  +
Sbjct: 128 ITLSNAIITLPVDRSFSSLNLAMAVGVFAHEWR 160


>gi|161502300|ref|YP_001569412.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863647|gb|ABX20270.1| hypothetical protein SARI_00331 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 242

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDEALTGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEATNTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|322494262|emb|CBZ29561.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 671

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 29/73 (39%)

Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261
           L++G E  G+R    +                              A  + ++   G   
Sbjct: 204 LVVGHENWGVRRSLLQAKEDTTQALLCARTRAAALASIPPSTPAPVADMVVYVPQYGTTS 263

Query: 262 ALNVSNAAAVALY 274
           +LNV+ +  +AL+
Sbjct: 264 SLNVATSLGIALF 276



 Score = 37.7 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++ ++  D  N G ++RSA AF  D I    R       +    A G+  + P + +
Sbjct: 430 GLSVLYENEYDQRNFGGLIRSANAFLVDYIFYVGRR-----KINVVGAVGSYHYTPPVHL 484

Query: 193 SNLTD 197
             L D
Sbjct: 485 GALPD 489


>gi|70923352|ref|XP_734698.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56507678|emb|CAH88803.1| hypothetical protein PC300153.00.0 [Plasmodium chabaudi chabaudi]
          Length = 105

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S++ +V+ ++    NIG I+RS VAF+   I    R   ++       + G   +I    
Sbjct: 25  SKMYVVIYNIGKKKNIGNIVRSCVAFNVSEIFVVGR---NKKETSFFGSMGTHGYIKIRY 81

Query: 192 ISNLTDALQKMHSWGFQTIG 211
            +N+ +  Q +++       
Sbjct: 82  FTNMIELKQYLNNNDILLYA 101


>gi|330830514|ref|YP_004393466.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328805650|gb|AEB50849.1| RNA methyltransferase, TrmH family, group 1 [Aeromonas veronii
           B565]
          Length = 234

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR- 191
           +L  VL     P N+GA  R+      D +         E    +  A GA E +     
Sbjct: 2   KLYFVLVAPARPANVGAAARAMKTMGFDAMRLVASR-VHEEEEASWVAHGAQEILTQAEA 60

Query: 192 ISNLTDALQKM--------HSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
              L +AL  M           G +Q      + ++ +  +   +K+A++ G E  GL  
Sbjct: 61  FDTLPEALADMDLVIATTARERGRYQHYLTPGEIREQIRSKPSLNKVAIVFGCEESGLSN 120

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +       +++L +     +LN+  A  + LY 
Sbjct: 121 EQLAEVDLISYLPLKVSYPSLNLGQA--IMLYA 151


>gi|322420060|ref|YP_004199283.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
 gi|320126447|gb|ADW14007.1| RNA methyltransferase, TrmH family, group 1 [Geobacter sp. M18]
          Length = 245

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 47/155 (30%), Gaps = 21/155 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P NIG + R+        +         +     K A  A + +   RI ++
Sbjct: 9   VVLVGTQSPGNIGMVCRAMKNMGLRDLRLVNPCQV-DHLDAIKFAVSARDLLESARIFTS 67

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGL 240
           L DAL       +         K     EI                  +AL+ G E  GL
Sbjct: 68  LEDALA---DSEYSVATTRRHGK--YRSEICTPPEIVERFAGCAPGSRLALVFGREDSGL 122

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                      + +       +LN+S A  +  Y 
Sbjct: 123 TTDEVALCRWQSTIETADEFGSLNLSQAVLIFCYE 157


>gi|229589046|ref|YP_002871165.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25]
 gi|229360912|emb|CAY47772.1| putative RNA methyltransferase [Pseudomonas fluorescens SBW25]
          Length = 155

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 12/146 (8%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T       +             IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGVRY-ERARDFITDTKKVHHDIPLIGIDDLKK 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         +  +PL +    D+   I G E   L  + ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVEGARPLPEYTHPDRALYIFGPEDGSLDKEIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
            G +   N++    V LY   +  AK
Sbjct: 126 TGCM---NLAATVNVVLY---DRLAK 145


>gi|160875952|ref|YP_001555268.1| tRNA/rRNA methyltransferase SpoU [Shewanella baltica OS195]
 gi|160861474|gb|ABX50008.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS195]
 gi|315268147|gb|ADT95000.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella baltica OS678]
          Length = 254

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKS-ASGALEHIPYIRISNLTDAL 199
           P N+G I+R++  +  DG+  T R    +    AV        A E IP   +++L  ++
Sbjct: 55  PVNVGGIMRASGCYGVDGVFYTGRRYELAARSGAVQYHVDTKDAGERIPLTGVTSLLASI 114

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMP 257
                   + I +       PL   +   K   + G E  G +  +  + A ++ ++   
Sbjct: 115 P----ADTKLICVDLVVGATPLPDFVHPAKAFYVFGPE-DGTIGQEIIDKADAVVYVPTV 169

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G +   N++ +  V LY   +  AK
Sbjct: 170 GCM---NLAASVNVLLY---DRLAK 188


>gi|150396729|ref|YP_001327196.1| RNA methyltransferase [Sinorhizobium medicae WSM419]
 gi|150028244|gb|ABR60361.1| RNA methyltransferase, TrmH family, group 1 [Sinorhizobium medicae
           WSM419]
          Length = 276

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 15/140 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           NIG + R+   F    +          S     +AS A   I   +    L +AL  + +
Sbjct: 27  NIGMVARAMANFGLSELRLVSPRDGWPSEKARSAASRADHVIDGAKLYETLEEALADL-N 85

Query: 205 WGFQTIGLSSDSKKPLEQEIK-----------NDKIALILGAEGKGLRPKTQETATSMAH 253
           + + T     D  KP+   I              K+ +I G E  GL       A  +  
Sbjct: 86  FVYATTARDRDGFKPVRSPIVAARELRQRFSVGQKVGIIFGRERTGLTNAEVALADEIVT 145

Query: 254 LHMPGIIKALNVSNAAAVAL 273
             +     +LN++ A  V L
Sbjct: 146 FPVNPAFASLNLAQA--VLL 163


>gi|86138325|ref|ZP_01056899.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           MED193]
 gi|85824850|gb|EAQ45051.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           MED193]
          Length = 260

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 17/148 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISNLTDALQKMHS 204
           NIGA  R+   F  D +          +      ASGA   +   I   +L +AL+   S
Sbjct: 20  NIGAAARAMWNFGLDRMRIVSPRDGWPNPKAVAMASGAGRLLDEAILAQDLPEALEDC-S 78

Query: 205 WGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + F T     +  KP+            +    +K+A++ G E  GL  +    A ++  
Sbjct: 79  FVFATTARPRELVKPVYSPEAAMKLAAQKIKTGEKVAVLFGPERAGLENEDIARANAIIS 138

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           + +     +LN+     V L  Y  Q  
Sbjct: 139 VPVNPDFASLNLGQC--VLLTAYEWQRQ 164


>gi|292489067|ref|YP_003531954.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|292900195|ref|YP_003539564.1| tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291200043|emb|CBJ47168.1| putative tRNA/rRNA methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291554501|emb|CBA22048.1| putative RNA methyltransferase [Erwinia amylovora CFBP1430]
 gi|312173223|emb|CBX81478.1| putative RNA methyltransferase [Erwinia amylovora ATCC BAA-2158]
          Length = 241

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 23/158 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVKPDSQAIALAAGAS----DVIGEAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  S     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEATSGCSLVVGTSARSRSLPWPMLDPRECGLKSVEEGQQAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHL---HMPGIIKALNVSNAAAVALYITQ 277
              +       +          +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIAANPQY---SSLNLAMAVQIIAYEVR 157


>gi|241204881|ref|YP_002975977.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858771|gb|ACS56438.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 276

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L       NIG + R+   F    +          +     +AS A   I   ++   
Sbjct: 17  IILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIEATKVYDT 76

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQEI-----------KNDKIALILGAEGKGL 240
           L  A+  ++         ++   D  KP+   +             +   ++ G E  GL
Sbjct: 77  LEQAVADLN----FVYATTARERDGYKPVRSPVIAAETLRARFRAGEGTGILFGRERWGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +    A  +    +     +LN++ A  V L
Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|330808105|ref|YP_004352567.1| RNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376213|gb|AEA67563.1| putative RNA methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 156

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 15/137 (10%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
           P N+G+++R+A  +    +  T +    +        K        IP I I +L   L 
Sbjct: 17  PENVGSVMRAAGCYGVASVFYTGKRYERAADFVTDTKKV----HYDIPLIGIDDLKKILP 72

Query: 201 KMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
                G   + +   +  +PL +    D+   I G E   L    ++    + ++   G 
Sbjct: 73  ----LGCVPVAVELVEGARPLPEYTHPDRALYIFGPEDGSLDKDIRDWCEDVVYIPTTGC 128

Query: 260 IKALNVSNAAAVALYIT 276
           +   N++    V LY  
Sbjct: 129 M---NLAATVNVVLYDR 142


>gi|226328027|ref|ZP_03803545.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
 gi|225203731|gb|EEG86085.1| hypothetical protein PROPEN_01918 [Proteus penneri ATCC 35198]
          Length = 252

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 23/149 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHI-PYIRI 192
           ++L   +   N+G+   +A A    G+      +P E         ++GA + I     +
Sbjct: 17  IILVETSHTGNMGS---TARAMKTMGLTNLYFVNPKEKPDSHSIALSAGASDVIGNAHIV 73

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKG 239
           +++ +A++     G   IG S+ S+                  E K+  +A+I G E  G
Sbjct: 74  NSIDEAIE---GCGL-VIGTSARSRTLSWPMLAPRECGERCVMEAKHKPVAIIFGRERTG 129

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNA 268
           L  +  +      ++       +LN++ A
Sbjct: 130 LTNEELQKCDFHLYVPTNPEYGSLNLAMA 158


>gi|58040206|ref|YP_192170.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
 gi|58002620|gb|AAW61514.1| SpoU rRNA methylase family protein [Gluconobacter oxydans 621H]
          Length = 264

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 51/158 (32%), Gaps = 11/158 (6%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + +   +++L       NIG   R+        +                ++SGA   + 
Sbjct: 19  IGDFDPVVILVRPQLAENIGTTARAMANGGLFHLRIVAPRDGWPQERAWYASSGADRILD 78

Query: 189 YIRI-SNLTDALQKMHS---------WGFQTIGLSSDSKKPLEQEIKND-KIALILGAEG 237
             ++   + DA+  +H             + +  +  +   L        +  ++ G E 
Sbjct: 79  AAQVFETVDDAVADLHRIFATCPRPRHVIKPVMTARGAAAELRVASNRGLRTGILFGPER 138

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            GL  +    A ++    +     +LN++ A  +  Y 
Sbjct: 139 AGLDNEDMARADTLVRYPLNPKFMSLNLAQAVLIMAYE 176


>gi|84996477|ref|XP_952960.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65303957|emb|CAI76336.1| hypothetical protein, conserved [Theileria annulata]
          Length = 398

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 30/232 (12%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSA--ALNNPSRKIFQLLATKNALARLDW 83
           +H     +   +  S + S    + L  +  +    A N P  +I+    + N L+  D 
Sbjct: 86  HHPVVNHLLKLSYSSNYRSYRGLVLLSSLKLIKEYCARNGPCNRIYTTSHSNNLLSDPDV 145

Query: 84  DANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVND 143
            ++      V  V  + + K+   ++  +GL  E  P   P+   +   +L++ L     
Sbjct: 146 KSD-----KVLLVSKKVLQKVGNLKSYDKGLLAEV-PYPKPS-SILGIPKLVLCLCPSTK 198

Query: 144 PHN------IGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASG--------ALEHIP 188
             N      +G ++RSA A     +   K         +  +S+          +L  IP
Sbjct: 199 KTNRTPDADLGTLIRSAQALQWQAVWVLKNGDIDLLDPLTIRSSHVYLVFIVLYSLSTIP 258

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDS----KKPLEQEIKNDKIALIL-GA 235
           Y R + + + L+            S D      +P+ ++I + K  +++ G 
Sbjct: 259 YSRGT-IHETLEFAKKNDLLLCHSSKDGLDIDSEPVSEKISSHKGVMLMSGN 309


>gi|121593461|ref|YP_985357.1| RNA methyltransferase [Acidovorax sp. JS42]
 gi|120605541|gb|ABM41281.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax sp. JS42]
          Length = 264

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 30/175 (17%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPYIR-IS 193
           +L   +   N+GA  R+      D ++      P+        + ASGAL+ + + R ++
Sbjct: 6   ILIQTSHAGNVGATARAMKTMGFDDLVLVAPRWPNVLRKEETIQRASGALDVLAHARIVA 65

Query: 194 NLTDALQKM----------HSWGFQTIG-------------LSSDSKKPLEQEIKNDK-- 228
            L +AL+ +            +G  T                + D K P     +N    
Sbjct: 66  TLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARNPSPE 125

Query: 229 --IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +A + G+E  G+  +          +       +LN+  A  V  Y  +   A
Sbjct: 126 TGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALA 180


>gi|116073105|ref|ZP_01470367.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
 gi|116068410|gb|EAU74162.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9916]
          Length = 241

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 18/149 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKM 202
           P N+G++ R    F+   +               + A      +   RI   L  A+   
Sbjct: 6   PLNVGSVARLCANFAVHDLRLVTPRCDPSDPDALRMAVHGRSVLTSARIYPTLLAAVSDC 65

Query: 203 HSWGFQTIGLSS---DSKKPL--EQEIKN--------DKIALILGAEGKGLRPKTQETAT 249
                + +  +        PL   + +            IAL+ G E  GL       + 
Sbjct: 66  S----RVVATAGRLDHGTIPLGPPEAVLPWAISGSGQQPIALVFGREDHGLTNAELLLSQ 121

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQN 278
            +  LH      +LN+S+A AV L+    
Sbjct: 122 RVITLHSSDTYPSLNLSHAVAVVLHDIAR 150


>gi|85059749|ref|YP_455451.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123519073|sp|Q2NS29|TRMJ_SODGM RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|84780269|dbj|BAE75046.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 255

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 23/158 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHI-PYIRI 192
           +VL   +   NIG+   +A A    G+      +P           ++GA + I     +
Sbjct: 7   IVLVETSHTGNIGS---TARAMKTMGLSNLYLVNPLHKPDAQAIALSAGASDIIGNASVV 63

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKG 239
            NL  AL          +G S+ S+                 QE     +AL+ G E  G
Sbjct: 64  DNLDQALAGCS----LVVGTSARSRTLPWPMLEPRECGVKSIQEAAQAPVALLFGRERVG 119

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L     +       +       +LN++ A  +  Y  +
Sbjct: 120 LTNDELQKCHFHVQIPANHEYSSLNLAMAVQILAYEVR 157


>gi|307151216|ref|YP_003886600.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7822]
 gi|306981444|gb|ADN13325.1| RNA methyltransferase, TrmH family, group 1 [Cyanothece sp. PCC
           7822]
          Length = 256

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 16/145 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISNLTDALQKMHS 204
           N+G++ R         +I        +S    + A    + +    ++++L  AL     
Sbjct: 21  NVGSVARVMKNMGLKRLILVNPQCEPKSDEARRMAVHGQDILEQLQQVNSLPQALVGCQR 80

Query: 205 WGFQTIGLSSDSKK-PLEQEIKNDKI----------ALILGAEGKGLRPKTQETATSMAH 253
                I  +  S+  P   E     +          A+I G E +GL       A     
Sbjct: 81  A----IATTGRSRTLPTHFESPRAALPWLLTPHSTSAIIFGPEDRGLSNSELNYAQRFVC 136

Query: 254 LHMPGIIKALNVSNAAAVALYITQN 278
           +       +LN++ A A+  Y  + 
Sbjct: 137 IPANPDYPSLNLAQAVAICAYELRQ 161


>gi|260460844|ref|ZP_05809094.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
           opportunistum WSM2075]
 gi|259033421|gb|EEW34682.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium
           opportunistum WSM2075]
          Length = 306

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 11/159 (6%)

Query: 122 LSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS 181
           ++   D    +   ++L       NIG + R+   F    +          S     +AS
Sbjct: 3   ITKDPDNASAAGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAAS 62

Query: 182 GALEHIPYIRI-SNLTDALQKM---------HSWGFQTIGLSSDSKKPLEQEI-KNDKIA 230
            A   I  +++  +L  AL  +            GF+T+    ++ + L        +  
Sbjct: 63  RADHVIDAVKVFDDLASALADLNFVFATTARQRDGFKTVRGPVEAGRVLRARHGMGQRTG 122

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           ++ G E  GL       A  +    +     +LN++ AA
Sbjct: 123 ILFGRERFGLYNDEVGLADEIVTFPVDPDFSSLNIAQAA 161


>gi|328946998|ref|YP_004364335.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
 gi|328447322|gb|AEB13038.1| tRNA/rRNA methyltransferase (SpoU) [Treponema succinifaciens DSM
           2489]
          Length = 242

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 223 EIKNDKIALILGAEGKGLRP-KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           E K  K+A++ G E  GL   +  E       +       +LN+S+A  +  Y    +
Sbjct: 110 EKKGGKVAVVFGNERTGLDDNEILE-CEMGVTIPSSEEFGSLNLSHAVQIMCYTLFRY 166


>gi|285018692|ref|YP_003376403.1| tRNA/rrna methyltransferase [Xanthomonas albilineans GPE PC73]
 gi|283473910|emb|CBA16411.1| putative trna/rrna methyltransferase protein [Xanthomonas
           albilineans]
          Length = 252

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +++  VL     P NIGA  R+         ++     S        + ++GA + +   
Sbjct: 5   ARIRFVLVGTQHPGNIGAAARAMKTMGLARLVLVAPECSVDV--DAYRRSAGAEDVLQQA 62

Query: 191 RI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LI------------LGA 235
            +   L DAL          +G ++ S++   QE+     A  L              G 
Sbjct: 63  PVLPTLADALADCR----LVLGCTARSRRVALQELLPADAAQRLAATVADAAEVAVVFGR 118

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           E  GL  +  +   +  H+       +LN++ A  V  Y  +
Sbjct: 119 ERTGLTNEELQQCHAAVHIPSDPAFSSLNLAAAVQVLAYEVR 160


>gi|156935477|ref|YP_001439393.1| putative RNA methyltransferase [Cronobacter sakazakii ATCC BAA-894]
 gi|156533731|gb|ABU78557.1| hypothetical protein ESA_03336 [Cronobacter sakazakii ATCC BAA-894]
          Length = 228

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 18/147 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+GA  R+        +               + A GA + +   R  +   A   + 
Sbjct: 13  PENVGAAARAMKTMGFTELRIV-ASEAHLDPAARRVAHGAGDILDNTRHYDTLAA--ALE 69

Query: 204 SWGFQTIGLSSDSKKPLEQE-------IKNDK------IALILGAEGKGLRPKTQETATS 250
              F     +    K            +  +K       AL+ G E  GL       A  
Sbjct: 70  EVDFTVATTARSRAKFHYYATPQQLLPLLEEKAAWLPVTALVFGREDSGLTNDELALADV 129

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + M     +LN+  A  V +Y  Q
Sbjct: 130 LTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|13357828|ref|NP_078102.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|167971944|ref|ZP_02554221.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|168282436|ref|ZP_02690103.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|168308590|ref|ZP_02691265.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|170762254|ref|YP_001752351.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|11357050|pir||F82913 rRNA methylase UU268 [imported] - Ureaplasma urealyticum
 gi|6899239|gb|AAF30677.1|AE002123_10 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827831|gb|ACA33093.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902611|gb|EDT48900.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675800|gb|EDT87705.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186700642|gb|EDU18924.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 172

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 25/153 (16%)

Query: 146 NIGAILRSAVAFSCD-------GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           N G I R  V F  +       G I  K+          ++++  L  +      +  + 
Sbjct: 14  NTGNIARMCVGFDANLHLVRPYGFILDKKR---FHKDFIRASTNHLNALKLYEYDDFNEF 70

Query: 199 LQKMHSWG-----FQTIGLSSDSKKPL---EQEIKNDKIALILGAEGKGLRPKTQET-AT 249
           + K +  G     F   G     K P     Q I    + L+ G E  G+     +    
Sbjct: 71  INKNNISGDEIYFFTRYGT----KTPCDYQYQNIIQHNVYLVFGKESTGIDHNILKKYPH 126

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYI--TQNHF 280
           +   +     +++LN++N+ A+ +Y    QN+F
Sbjct: 127 NWIRIPTSINLRSLNIANSVAMGIYEVVRQNNF 159


>gi|319794743|ref|YP_004156383.1| RNA methyltransferase, trmh family, group 1 [Variovorax paradoxus
           EPS]
 gi|315597206|gb|ADU38272.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           EPS]
          Length = 247

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 18/147 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPYIRISN 194
           +L   +   N+GA  R+      D ++       +        + ASGA   +  +  + 
Sbjct: 6   ILIQTSHAGNVGAAARAMKTMGFDDLVLVAPRWANVLRREETIQRASGA---LDVLTNAR 62

Query: 195 LTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLR 241
           + + L +           +              +  +PL +E     +A + G+E  G+R
Sbjct: 63  IVETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKEGDAQHVAFLFGSERFGMR 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +          +       +LN+  A
Sbjct: 123 NEDVYRCNVALSIPTDPKFGSLNLGAA 149


>gi|218551706|ref|YP_002385498.1| RNA methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218359248|emb|CAQ91914.1| rRNA methyltransferase [Escherichia fergusonii ATCC 35469]
          Length = 228

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 20/159 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIR 191
           +L ++L       NIGA  R+        +                 A G+ + I     
Sbjct: 2   RLTIILVAPARAENIGAAARAMKTMGFHEMRIVD-SQAHLEPATRWVAHGSGDIIDNIAV 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGK 238
            S+L +A   +    F     +    K        +              +AL+ G E  
Sbjct: 61  FSSLAEA---LQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHVALVFGREDS 117

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 118 GLTNEELALADILTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|163736384|ref|ZP_02143803.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
           BS107]
 gi|161390254|gb|EDQ14604.1| RNA methyltransferase TrmH, group 1 [Phaeobacter gallaeciensis
           BS107]
          Length = 280

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           N+GA  R+   F  D +          +      ASGA   +   R   +L  A++    
Sbjct: 52  NVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEARLAEDLAGAIEDC-D 110

Query: 205 WGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + F T     +  KP+            +    +K+A++ G E  GL  +    A ++  
Sbjct: 111 FVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGPERAGLENEDIARANAIIS 170

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           + +     +LN+     V L  Y  +  
Sbjct: 171 VPVNPEFASLNLGQC--VLLTAYEWRRQ 196


>gi|157873987|ref|XP_001685489.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128561|emb|CAJ08693.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 671

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 29/73 (39%)

Query: 231 LILGAEGKGLRPKTQET-----------------------------ATSMAHLHMPGIIK 261
           L++G E  G+R                                   A  + ++   G   
Sbjct: 204 LVVGHENWGVRRSLLRAKDGTTLAPLCDRTRTAALVGIPRSTPAPMADMVVYVPQYGTTS 263

Query: 262 ALNVSNAAAVALY 274
           +LNV+ +  +AL+
Sbjct: 264 SLNVATSLGIALF 276



 Score = 37.7 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++ ++  D  N G ++RSA AF  D I    R       +    A G+  + P + +
Sbjct: 430 GLSVLYENEYDQRNFGGLIRSANAFLVDYIFYVGRR-----KINVVGAVGSYHYTPPVHL 484

Query: 193 SNLTD 197
             L D
Sbjct: 485 GALPD 489


>gi|330718907|ref|ZP_08313507.1| tRNA/rRNA methyltransferase [Leuconostoc fallax KCTC 3537]
          Length = 33

 Score = 48.1 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQN 278
           M  + M G +++LN S AA++ +Y   N
Sbjct: 1   MLTIPMIGHVQSLNASVAASLLIYQGFN 28


>gi|71281163|ref|YP_267872.1| RNA methyltransferase [Colwellia psychrerythraea 34H]
 gi|71146903|gb|AAZ27376.1| RNA methyltransferase, TrmH family, group 1 [Colwellia
           psychrerythraea 34H]
          Length = 273

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 51/147 (34%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + +D  NIG+  R+        +I             A +A           +S L
Sbjct: 23  IVLVNTSDCRNIGSAARAMKTMGLSQLILVDPIEMPNGQAQAMAAGATDVLANAKVVSTL 82

Query: 196 TDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGLR 241
            +A++     G   +G S+                +K + +  +   +AL+ G E  GL 
Sbjct: 83  AEAIE---DCGL-VVGTSARSRTLPWPMLEPRGCGEKMIAEADEY-PVALVFGRENSGLT 137

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +       +       +LN++ A
Sbjct: 138 NEELQLCHFHVQIPANPEYSSLNLAMA 164


>gi|312869514|ref|ZP_07729669.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris
           PB013-T2-3]
 gi|311094961|gb|EFQ53250.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus oris
           PB013-T2-3]
          Length = 169

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 9/142 (6%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    + +  +       ++   + ++     + +      +L   L  + 
Sbjct: 13  PANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHDDLPAFLATIP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAEGKGLRPK-TQETATSMAHLHMPG 258
               +   +S  +             A     + G E  GL     ++   +   +    
Sbjct: 73  DME-KLYIVSKFANHDYTDVDYTG--AGDHYFLFGKETTGLPEAFMRKYPENAIRIPQND 129

Query: 259 -IIKALNVSNAAAVALYITQNH 279
             I+ALN+SN+AA+ +Y     
Sbjct: 130 DNIRALNLSNSAAIVIYEALRQ 151


>gi|156932916|ref|YP_001436832.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
 gi|166234836|sp|A7MGX5|TRMJ_ENTS8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|156531170|gb|ABU75996.1| hypothetical protein ESA_00719 [Cronobacter sakazakii ATCC BAA-894]
          Length = 245

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNASI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +A++ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEATHAPVAIVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|283786147|ref|YP_003366012.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282949601|emb|CBG89220.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 244

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L    +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|103486280|ref|YP_615841.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
 gi|98976357|gb|ABF52508.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
          Length = 248

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 10/157 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              ++VL       NIG   R+ + F    +          +     +++GA   +   R
Sbjct: 6   PPPVIVLVRPQLGENIGKAARAMLNFGLTELRLVSPRDGWPNPDAGPASAGADVVLAGAR 65

Query: 192 I-SNLTDALQKM--------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           +   L +A+              G     L+ ++    +   +  + A + G E  GL  
Sbjct: 66  VFETLAEAVADCTDIYATTVRKRGVTKAVLTPEAAAQ-KVHAQPGRSAYVFGPERSGLET 124

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                A ++  + +     +LN++ A  +  Y    H
Sbjct: 125 DDVALAHAIVTVPINPAFGSLNLAQAVILLAYEWSKH 161


>gi|293392940|ref|ZP_06637257.1| RNA methyltransferase [Serratia odorifera DSM 4582]
 gi|291424474|gb|EFE97686.1| RNA methyltransferase [Serratia odorifera DSM 4582]
          Length = 225

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIR 191
           QL +VL     P N+GA  R+        +                 A GA E +     
Sbjct: 2   QLHIVLVAPARPENVGAAARAMKTMGFSSLRIVD-SDAHLQPAARWVAHGAGEILDAVQT 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAEG 237
              L  AL  +      T+  ++ S+           +              AL+ G E 
Sbjct: 61  FPTLEQALADVD----FTVATTARSRARFHYYCTPQALLEQLSERSQWMSQAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +  E A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELELADLLTGVPMQADYPSLNLGQA--VMVYCYQ 154


>gi|262044954|ref|ZP_06017996.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037681|gb|EEW38910.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 262

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +L ++L       N+GA  R+          I+ ++ +    +  +A  +   L+     
Sbjct: 2   RLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDG--IT 59

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDK------IALILGAEG 237
               L +A   +H   F     +    +            +  +K       AL+ G E 
Sbjct: 60  TYPTLAEA---LHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+    +V +Y  Q
Sbjct: 117 AGLTNEELALADVLTGVPMAADYPSLNLGQ--SVMVYCYQ 154


>gi|85373954|ref|YP_458016.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
 gi|84787037|gb|ABC63219.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
          Length = 384

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 85/236 (36%), Gaps = 21/236 (8%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWD--ANLPHPFPVKTVPPQTID--KIVGKEAVHQG 113
             AL +  R      A K  L   DW+  A+   P P +    Q I    +  +    +G
Sbjct: 56  EEALASELRIKKWSQAKKVGLIEGDWNKVAHFAKP-PSRRTSRQAISTGSMSARHERVKG 114

Query: 114 LALET----APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS 169
            A+      + + +P+ D  +  +  +VL       NIG   R+   F    +       
Sbjct: 115 TAVRVERGSSEVENPSRDIGKPQKPAIVLVRPQLGENIGNAARAMRNFGLTELRLVAPRD 174

Query: 170 PSESAVLAKSASGALEHIPYIRI-SNLTDALQKM--------HSWGF-QTIGLSSDSKKP 219
              +     SA+GA + +   ++ +   +A+              G  + +    ++ + 
Sbjct: 175 GWPNPDAGPSAAGADDVLERAQVFATTAEAVADCAHIYATTVRKRGVTKPVVTPEEAAQA 234

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +  +    K A++ G E  GL  +    A ++  + +     +LN++ A  +  Y 
Sbjct: 235 IHSQA--GKSAVLFGPERSGLETEDVALARAILTVPIDPEFGSLNLAQAVILCAYE 288


>gi|301063433|ref|ZP_07203965.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium
           NaphS2]
 gi|300442372|gb|EFK06605.1| RNA methyltransferase, TrmH family, group 2 [delta proteobacterium
           NaphS2]
          Length = 160

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 129 VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP 188
           + + +L +VL     P N G I R   A      +        +   L ++       I 
Sbjct: 3   LADPKLHVVLYQPEIPANTGNIARLCGAAQLRLHLIHPLGFSVDDKHLKRAGLDYWPDID 62

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET- 247
               +N    L  MH    +    S  +     Q   N    L+ G E  GL  + +   
Sbjct: 63  VQHHANFDAFLDGMHENA-RLFCFSRHASTVYPQAKVNRGDYLLFGRETLGLPLEIRNAY 121

Query: 248 -ATSMAHLHMPGIIKALNVSNAAAVALY 274
                  + + G +++LN+S    +  Y
Sbjct: 122 PC---YRVPIWGKVRSLNLSTTVGIVSY 146


>gi|330001784|ref|ZP_08304105.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
 gi|328537560|gb|EGF63784.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
          Length = 228

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 24/161 (14%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +L ++L       N+GA  R+          I+ ++ +    +  +A  +   L+     
Sbjct: 2   RLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDG--IT 59

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAE 236
               L +A   +H   F T+  ++ S+          ++              AL+ G E
Sbjct: 60  TYPTLAEA---LHDVDF-TVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGRE 115

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             GL  +    A  +  + M     +LN+    +V +Y  Q
Sbjct: 116 DSGLSNEELALADVLTGVPMAADYPSLNLGQ--SVMVYCYQ 154


>gi|319779345|ref|YP_004130258.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
 gi|317109369|gb|ADU92115.1| tRNA:Cm32/Um32 methyltransferase [Taylorella equigenitalis MCE9]
          Length = 237

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 26/160 (16%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIIT-----TKRYSPSESAVLAKSASGALEHIPYIRI 192
           +D  +   NIG+  R+        +        + +S  ++  +A +A   L  +     
Sbjct: 1   MDQTSHGGNIGSAARALKTMGFSNLTISNSKLKEIHSNKDAIAMASNAQDTLSAVKV--K 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI---------------KNDKIALILGAEG 237
            NL +AL  ++        L++ +++  E                  KN  IA+++G E 
Sbjct: 59  DNLNEALSDINMA----FALTARARRDFESIDVRQMATVALNHLIESKNHNIAIVMGNEQ 114

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL   +      +  +       +LNV+ A  +  +  +
Sbjct: 115 SGLDNNSLYNFNYIVSIPANPEYSSLNVAQALQITAWELR 154


>gi|55376959|ref|YP_134809.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55229684|gb|AAV45103.1| RNA methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 241

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 44/153 (28%), Gaps = 26/153 (16%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKM 202
           P N+G I RS   F    ++                A  A + I P  R     D ++  
Sbjct: 12  PGNVGTIARSMKNFGLSELLLVDPPELDPDGEAYGFAGQARDDILPNARTVTFDDIVENY 71

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKN---------------DKIALILGAEGKGLRPKTQET 247
           H         ++ ++ P                        I ++ G E  GL       
Sbjct: 72  H----TVACTATTNEDPANHVRYPATTPADLADSLQDVEGDICVVFGRERVGLSNDELAR 127

Query: 248 ATSMAHLHMPGIIKA---LNVSNAAAVALYITQ 277
              +  +       +   LN+  AA + LY  +
Sbjct: 128 LDVICSIPASA---SYPVLNLGQAATIVLYELR 157


>gi|302786858|ref|XP_002975200.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
 gi|300157359|gb|EFJ23985.1| hypothetical protein SELMODRAFT_415294 [Selaginella moellendorffii]
          Length = 338

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL------YITQN 278
           K   IAL+ G E  GL  +     T    +       +LNVS+A A+AL      Y    
Sbjct: 124 KGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSHAVALALSKMFSSYERLR 183

Query: 279 HFAK 282
              K
Sbjct: 184 RVHK 187


>gi|312959593|ref|ZP_07774110.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
 gi|311286310|gb|EFQ64874.1| RNA methyltransferase [Pseudomonas fluorescens WH6]
          Length = 155

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T       +             IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGVRY-ERARDFVTDTKKVHHDIPLIGIDDLKK 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         +  +PL +    D+   I G E   L  + ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVEGARPLPEYTHPDRALYIFGPEDGSLDKEIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYIT 276
            G +   N++    V LY  
Sbjct: 126 TGCM---NLAATVNVVLYDR 142


>gi|163749011|ref|ZP_02156262.1| putative RNA methyltransferase [Shewanella benthica KT99]
 gi|161331387|gb|EDQ02275.1| putative RNA methyltransferase [Shewanella benthica KT99]
          Length = 229

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 20/151 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA-SGALEHIPYIR 191
            L+ VL   + P N+GA  R+      + +I       + +  L K A   A      + 
Sbjct: 2   SLVFVLVEPSRPANVGAAARAIKTMGFEQLIL-----VNSNLHLDKEAHWLAHGATDILA 56

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEG 237
            + + D++  + +     I  ++  +    Q +  D              KIAL+ G E 
Sbjct: 57  QTLVVDSVADIRAQYDHLIATTARERGTPRQYLTPDELKDTVLQQLGSVKKIALLFGRES 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            GL     E     +++ +     +LN++ A
Sbjct: 117 SGLSNSELELCDLFSYVPLINDYPSLNLAQA 147


>gi|288549938|ref|ZP_05968701.2| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317270|gb|EFC56208.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Enterobacter
           cancerogenus ATCC 35316]
          Length = 263

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 29  IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 84

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 85  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAVQAPVALVFGRERVGLTN 144

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 145 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 179


>gi|118594590|ref|ZP_01551937.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Methylophilales bacterium HTCC2181]
 gi|118440368|gb|EAV46995.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Methylophilales bacterium HTCC2181]
          Length = 246

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 19/160 (11%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYI 190
           +Q  +VL   +   NIG+  R+        +   +      S      A+GA + +   I
Sbjct: 9   NQFNVVLCRTSHGGNIGSSARAMKTMGLSNLYLVQPKHFP-SDDAYALAAGADDILDKAI 67

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEG 237
            + +L DA++  H      IG ++             +S + L    ++ KI+L+ G E 
Sbjct: 68  IVGSLEDAIKDSHIA----IGFTARRRELSQPHKNIRESAQNLIAIAEDQKISLVFGNET 123

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL     +    ++ +       +LN++ A  +  +  +
Sbjct: 124 NGLSNDEIKHCQLLSFIDANKSYSSLNLAQAVQICCHELR 163


>gi|283783614|ref|YP_003374368.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
           vaginalis 409-05]
 gi|283441476|gb|ADB13942.1| putative RNA methyltransferase, TrmH family, group 2 [Gardnerella
           vaginalis 409-05]
          Length = 229

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 85  PGNTGSAIRLCAVTGTILHLVEPLGFNLHDTKLRRAGLDYHDMAHVVLHPNFENLVESMP 144

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++++ K   +        L+ G E G  +                 L M  
Sbjct: 145 NS--RIIAFTANATKLYTEIEYKPNDILLFGPEPGD-IPDPMDVMAGPHVAEQVRLPMRP 201

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 202 SLRSLNLTNCASIAVYEAWRQLG 224


>gi|302791677|ref|XP_002977605.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
 gi|300154975|gb|EFJ21609.1| hypothetical protein SELMODRAFT_443580 [Selaginella moellendorffii]
          Length = 338

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL------YITQN 278
           K   IAL+ G E  GL  +     T    +       +LNVS+A A+AL      Y    
Sbjct: 124 KGQAIALVFGREDDGLTNEELLYCTHTCRIPTTKWEGSLNVSHAVALALSKMFSSYERLR 183

Query: 279 HFAK 282
              K
Sbjct: 184 RVHK 187


>gi|298252928|ref|ZP_06976722.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1]
 gi|297533292|gb|EFH72176.1| SpoU class rRNA methylase [Gardnerella vaginalis 5-1]
          Length = 233

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 89  PGNTGSAIRLCAVTGTILHLVEPLGFNLHDTKLRRAGLDYHDMAHVVLHPNFENLVESMP 148

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++++ K   +        L+ G E G  +                 L M  
Sbjct: 149 NS--RIIAFTANATKLYTEIEYKPNDILLFGPEPGD-IPDPMDVMAGPHVAEQVRLPMRP 205

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 206 SLRSLNLTNCASIAVYEAWRQLG 228


>gi|194468370|ref|ZP_03074356.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
           100-23]
 gi|194453223|gb|EDX42121.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
           100-23]
          Length = 169

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 5/140 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    + +  +       ++   + ++     + +      +L   ++ + 
Sbjct: 13  PANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHEDLPSFMKTIP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSM-AHLHMP-GI 259
               +   +S  +           +     + G E  GL  +  +        +      
Sbjct: 73  DIN-RLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPENAIRIPQNDNN 131

Query: 260 IKALNVSNAAAVALYITQNH 279
           I+ALN+SN+AA+ +Y     
Sbjct: 132 IRALNLSNSAAIVIYEALRQ 151


>gi|148543814|ref|YP_001271184.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184153219|ref|YP_001841560.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227364718|ref|ZP_03848767.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682655|ref|ZP_08162172.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530848|gb|ABQ82847.1| RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri
           DSM 20016]
 gi|183224563|dbj|BAG25080.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
 gi|227070177|gb|EEI08551.1| SpoU family RNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978494|gb|EGC15444.1| TrmH family RNA methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 169

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 5/140 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    + +  +       ++   + ++     + +      +L   ++ + 
Sbjct: 13  PANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHEDLPSFMKTIP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSM-AHLHMP-GI 259
               +   +S  +           +     + G E  GL  +  +        +      
Sbjct: 73  DIN-RLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPENAIRIPQNDNN 131

Query: 260 IKALNVSNAAAVALYITQNH 279
           I+ALN+SN+AA+ +Y     
Sbjct: 132 IRALNLSNSAAIVIYEALRQ 151


>gi|94310024|ref|YP_583234.1| RNA methyltransferase TrmH [Cupriavidus metallidurans CH34]
 gi|93353876|gb|ABF07965.1| putative RNA methyltransferase (TrmH family) [Cupriavidus
           metallidurans CH34]
          Length = 289

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 25/164 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGI----ITTKRYSPSE--SAVLAKSASGALEHIPY 189
           +VL   + P N+G++ R+        +    +      P           ASGA + +  
Sbjct: 30  VVLVETSHPGNVGSVARAIKTMGFGHVPGSLVLVSPREPGVVSHPDAVAMASGADDVLAS 89

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSK---------------KPLEQEIKNDKIALILG 234
             I +  +A   +    F     +   +               + + +      +A + G
Sbjct: 90  ATIVDSIEA--ALAGTAFTVAMTARQREFGPPRLLPRAAVAKARSVLEADPATTVAFVFG 147

Query: 235 AEGKGLRPKTQETATSMAHLHMPGII-KALNVSNAAAVALYITQ 277
            E  GL        +++ H+     +  +LN++ A  +  Y  +
Sbjct: 148 NERFGLPNDAVLRCSAVTHIP-ANPVYASLNLAQAVQLIAYEMR 190


>gi|311696308|gb|ADP99181.1| RNA methyltransferase, TrmH family, group 1 [marine bacterium HP15]
          Length = 242

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 20/157 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           QL  VL     P N+GA  R+        +      S   +    ++   A      +  
Sbjct: 2   QLAFVLVEPKVPENVGAAARALCTMGFGELWLV--NSDLHTRP--EAHWLAHGSDHILDN 57

Query: 193 SNLTDALQKMHSWGFQTIGLSS---------DSKKPLEQEIKND-----KIALILGAEGK 238
           + +   L  + +     +G S+              L + +          AL+ G E +
Sbjct: 58  ARIFPDLAAVRNSVDLLMGTSAKTRHQRQDWHGPSDLRKVLATKGASVATAALVFGREDR 117

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           GL  +       +  + M     +LN++   +V LY 
Sbjct: 118 GLSNEELALCDLLTGIPMKVTYPSLNLAQ--SVMLYA 152


>gi|242240171|ref|YP_002988352.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
 gi|242132228|gb|ACS86530.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
          Length = 244

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  ++ +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSRLFLVNPLVKPDSQAISLAAGAS----DVISHATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-------PLE------QEIKNDKIALILGAEGKGLRP 242
            + L +        IG S+ S+        P E      +E ++  +A++ G E  GL  
Sbjct: 63  VETLDQALEGCSLVIGTSARSRTLQWPMLEPRECGVLSAEEARHAPVAIVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
              +       +       +LN++ A
Sbjct: 123 DELQKCHYHVAIPANPEYSSLNLAMA 148


>gi|119713222|gb|ABL97289.1| RNA methyltransferase [uncultured marine bacterium HF10_05C07]
          Length = 243

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 23/159 (14%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +L   + P NIGA  R+          ++  ++    E+   AKSA   LE+    +  +
Sbjct: 12  ILVEPSHPGNIGACARAIKNMGFKKLALVNPRKKITEEAFHRAKSAKDILENTVIYKSFD 71

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKP---------LEQEI------KNDKIALILGAEGKG 239
           L    + +       +  S+  +           +  E+      K  K  ++ G E  G
Sbjct: 72  LAIGDKNL------ILATSARERTIPWPTFYVDKISDEVKSQIKTKTTKTGIVFGREDNG 125

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           L  +  +       +       +LN+S+A  +  +  + 
Sbjct: 126 LSNEELQKCHYHLIIPASEEYSSLNLSHALQIVAFEIRK 164


>gi|255605057|ref|XP_002538330.1| conserved hypothetical protein [Ricinus communis]
 gi|223512695|gb|EEF24052.1| conserved hypothetical protein [Ricinus communis]
          Length = 259

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 48/153 (31%), Gaps = 21/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L       NIG + R+   F    +          +     +AS A   I   ++   
Sbjct: 17  IILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQATASKADHIIEATKVYDT 76

Query: 195 LTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGL 240
           L  A+  ++         ++               ++    +    +   ++ G E  GL
Sbjct: 77  LEQAIADLN----FVYATTARERYGYKPVRSPVAAAETLRAKFKAGEGTGILFGRERWGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +    A  +    +     +LN++ A  V L
Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|222086156|ref|YP_002544688.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
 gi|221723604|gb|ACM26760.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
          Length = 280

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L       NIG + R+   F    +          +     +AS A   I   ++   
Sbjct: 17  VILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNERAQATASKADHIIEATKVYDT 76

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLE-----------QEIKNDKIALILGAEGKGL 240
           L  A+  ++         ++   D  KP+            +    +   ++ G E  GL
Sbjct: 77  LEQAVADLN----FVYATTARERDGFKPVRSPVVAAETLRARFKAGEGTGILFGRERWGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +    A  +    +     +LN++ A  V L
Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|238892988|ref|YP_002917722.1| putative RNA methyltransferase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545304|dbj|BAH61655.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 228

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 24/161 (14%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +L ++L       N+GA  R+          I+ ++ +    +  +A  +   L+     
Sbjct: 2   RLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDG--IT 59

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAE 236
               L +A   +    F T+  ++ S+          ++              AL+ G E
Sbjct: 60  TYPTLAEA---LRDVDF-TVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGRE 115

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             GL  +    A  +  + M     +LN+    +V +Y  Q
Sbjct: 116 DSGLSNEELALADVLTGVPMAADYPSLNLGQ--SVMVYCYQ 154


>gi|114563829|ref|YP_751342.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB
           400]
 gi|114335122|gb|ABI72504.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella frigidimarina NCIMB
           400]
          Length = 180

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 17/145 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKS-ASGALEHIPYIRISNLTDAL 199
           P N+G I+R+A  ++ D +  T +    +              A + IP + + +L D++
Sbjct: 19  PVNVGGIMRAAGCYNVDNVCYTGKRYELAAKSGDAQYDVDTKDAAKRIPLVGVESLLDSV 78

Query: 200 QKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMP 257
                 G   I +       PL   I  D    I G E  G +  +  + A  + ++   
Sbjct: 79  PD----GATIICVDLVVGATPLPLFIHPDNAFYIFGPE-DGTIPQQLIDAADDVVYVPTV 133

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
           G +   N++ +  V LY   +  AK
Sbjct: 134 GCM---NLAASVNVLLY---DRLAK 152


>gi|153004019|ref|YP_001378344.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152027592|gb|ABS25360.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +A++ G E +GL     E   ++  +       ++N++ + AV  Y    
Sbjct: 99  VAVVFGQERRGLSDAELELCQAVCSIPTAPAYDSMNLAQSVAVLAYEIGR 148


>gi|146312670|ref|YP_001177744.1| RNA methyltransferase [Enterobacter sp. 638]
 gi|145319546|gb|ABP61693.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
          Length = 244

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSTAEAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|317049146|ref|YP_004116794.1| TrmH family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316950763|gb|ADU70238.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. At-9b]
          Length = 247

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  ++ +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLSNLYLVNPLVKPDSQAISLAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEAIAGCSLVVGTSARSRSLPWPMLDSRECGIKSVEEGQQAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  +       +       +LN++ A  +  Y  +
Sbjct: 123 EELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157


>gi|94500611|ref|ZP_01307141.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
           RED65]
 gi|94427166|gb|EAT12146.1| rRNA methyltransferase, TrmH family protein [Oceanobacter sp.
           RED65]
          Length = 262

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 19/155 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+     P NIGA  R+        ++         S      A+GA + +   R+ N 
Sbjct: 25  IVMVRTWHPGNIGAAARAMKNMGLSDLVLVDP-VDYPSEQATSMAAGATDLLESARVVNS 83

Query: 196 TD-ALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKIALILGAEGKGLR 241
            D A++            S+             ++   +  EI   K+A++ G E  GL 
Sbjct: 84  IDVAIEDCQ----LVFATSARSRSHPWPIKEVREAAAHINDEIPQGKVAIMFGPERMGLN 139

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +    A     +        LNV+ A  V  Y  
Sbjct: 140 NEELRLAQFHMDIPGNPDYPVLNVAQAVQVVCYEL 174


>gi|222110178|ref|YP_002552442.1| TrmH family RNA methyltransferase [Acidovorax ebreus TPSY]
 gi|221729622|gb|ACM32442.1| RNA methyltransferase, TrmH family, group 1 [Acidovorax ebreus
           TPSY]
          Length = 264

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 59/175 (33%), Gaps = 30/175 (17%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPYIR-IS 193
           +L   +   N+GA  R+      D ++      P+        + ASGAL+ + + R ++
Sbjct: 6   ILIQTSHAGNVGATARAMKTMGFDDLVLVAPRWPNVLRKEETIQRASGALDVLAHARIVA 65

Query: 194 NLTDALQKM----------HSWGFQTIG-------------LSSDSKKPLEQEIKNDK-- 228
            L +AL+ +            +G  T                + D K P     +     
Sbjct: 66  TLDEALEGVSHLCATAMTPRDFGPPTRTPRQHFEMLLNNELSALDGKAPGADLARKPSPE 125

Query: 229 --IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             +A + G+E  G+  +          +       +LN+  A  V  Y  +   A
Sbjct: 126 SGVAFLFGSERFGMANEDVYRCHVALSIPTNPQFGSLNLGAAVQVIAYEWRQALA 180


>gi|145640975|ref|ZP_01796557.1| hypothetical protein CGSHiR3021_07897 [Haemophilus influenzae
           R3021]
 gi|145274489|gb|EDK14353.1| hypothetical protein CGSHiR3021_07897 [Haemophilus influenzae
           22.4-21]
          Length = 64

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 51  LYGVHTVSAALNNPSRKIFQLLATKNA-LARLDWDANLPH--PFPVKTVPPQTIDK 103
           +YG+H V++ L +   ++ ++   K     RL    N  +     V+ V  QT+DK
Sbjct: 5   IYGIHAVNSILTHSPERLIEVFVLKGREDKRLQPLLNELYSLGIGVQFVNRQTLDK 60


>gi|2623830|gb|AAB86563.1| unknown [Schistosoma mansoni]
          Length = 119

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 14/70 (20%)

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH--------LHMPGIIKALNV-SNA 268
                E  N ++A+++G+E  G+ P+    A  + H        +     I +LNV S A
Sbjct: 50  SDYNSEEHNCRLAVVIGSEAHGVSPE----AFHLVHLTGGSRLVIPSADRISSLNVLSXA 105

Query: 269 AAVALYITQN 278
            +V L   Q 
Sbjct: 106 -SVLLGEIQR 114


>gi|332708821|ref|ZP_08428792.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
 gi|332352363|gb|EGJ31932.1| RNA methyltransferase, TrmH family, group 1 [Lyngbya majuscula 3L]
          Length = 288

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 16/156 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL     P N+G++ R         ++         S    + A   ++ +   ++ + 
Sbjct: 31  IVLVEPAGPLNVGSVARVMKNMGLSQLVLVNPQCDHLSQDAQQMAVHGVDILEKAQVVAT 90

Query: 195 LTDALQKMHSWGFQTI------GLSSDSKKPLEQEIKND-KIALILGAEGKGLRPKTQET 247
           + D L         T             +  L   +      ALI G E +GL       
Sbjct: 91  IPDGLVGCQRAIATTARSRAIPTTLEHPRTALPWLLSAGVTSALIFGPESRGLSNDELNH 150

Query: 248 ATSMAHLHMPGIIKA----LNVSNAAAVALYITQNH 279
           A     +       +    LN++ A  V  Y    +
Sbjct: 151 AQRFVRIP----TSSTYPVLNLAQAVTVCCYELYQY 182


>gi|163741081|ref|ZP_02148473.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
           gallaeciensis 2.10]
 gi|161385434|gb|EDQ09811.1| RNA methyltransferase, TrmH family, group 1 [Phaeobacter
           gallaeciensis 2.10]
          Length = 232

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           N+GA  R+   F  D +          +      ASGA   +   R   +L  A++    
Sbjct: 4   NVGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDEARLAEDLAGAIEDC-D 62

Query: 205 WGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + F T     +  KP+            +    +K+A++ G E  GL  +    A ++  
Sbjct: 63  FVFATTARPRELTKPVYSPEAAMKLAAEKIAAGEKVAVMFGPERAGLENEDIARANAIIS 122

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           + +     +LN+     V L  Y  +  
Sbjct: 123 VPVNPEFASLNLGQC--VLLTAYEWRRQ 148


>gi|212224617|ref|YP_002307853.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009574|gb|ACJ16956.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 239

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 34/171 (19%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L ++L     P NIG I R+   F  + ++        ES + A  A   LE    +  
Sbjct: 2   KLNVILVEPEGPANIGMIARTMKNFGFNELVLINPNITEESYLYAVHARDVLERAAIVET 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEI-------------KNDKIALILGAEGK 238
                 L  +       +G +    K+ +                  + +I +  G E  
Sbjct: 62  FEEALGLVDLA------VGTTGKPGKRYIPDRAPMMPWELAEALQGYSGRIGIFFGRESI 115

Query: 239 GLRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYITQNHFAK 282
           GL+ +  E       +        M       N+S A AV LY       K
Sbjct: 116 GLKNEELERMDLTVTIPTSEIYPVM-------NLSQAVAVILYELAKGRRK 159


>gi|227529001|ref|ZP_03959050.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC
           49540]
 gi|227351013|gb|EEJ41304.1| SpoU family RNA methyltransferase [Lactobacillus vaginalis ATCC
           49540]
          Length = 169

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    + +  +       ++   + ++     + +      +L + +  + 
Sbjct: 13  PANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHDDLREFVSTVP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA-----LILGAEGKGLRPKTQ----ETATSMAHL 254
               +   +S  + +           A      + G E  GL  +      E A     +
Sbjct: 73  DIS-KLYLVSKFASRDYTDVDY---TADGDHYFLFGKETTGLPEEFMRRYPENA---IRI 125

Query: 255 HMP-GIIKALNVSNAAAVALYITQNH 279
                 I+ALN+SN+AA+ +Y     
Sbjct: 126 PQNDNNIRALNLSNSAAIVIYEALRQ 151


>gi|254228672|ref|ZP_04922096.1| rRNA methylase [Vibrio sp. Ex25]
 gi|262395131|ref|YP_003286985.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
 gi|151938851|gb|EDN57685.1| rRNA methylase [Vibrio sp. Ex25]
 gi|262338725|gb|ACY52520.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. Ex25]
          Length = 239

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V  ++ + A       + + +
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVL----VDPQCEVDEQTLALAAGAGDIAQNAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGLR 241
              L++        +G S+ S+  LE  +                  +AL+ G E  GL 
Sbjct: 63  VGTLEEAVEDCSLVVGSSARSRT-LEWPMLEPRECGEKFAVEGRKHPVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +       +       +LN++ A
Sbjct: 122 NEELQRCHYHVCIPANPEYSSLNLAMA 148


>gi|84394228|ref|ZP_00992956.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
 gi|86147034|ref|ZP_01065351.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218709943|ref|YP_002417564.1| RNA methyltransferase [Vibrio splendidus LGP32]
 gi|84375142|gb|EAP92061.1| 23S rRNA methyltransferase [Vibrio splendidus 12B01]
 gi|85835099|gb|EAQ53240.1| 23S rRNA methyltransferase [Vibrio sp. MED222]
 gi|218322962|emb|CAV19139.1| RNA methyltransferase [Vibrio splendidus LGP32]
          Length = 163

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 11/152 (7%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D +      + L +   P N+G+++R+A  +  + +  T             +    LE 
Sbjct: 7   DTLSKGYACVGLVNPKTPENVGSVMRAAGCYGANSVFYTGTRYDHARQFHTDTKEKHLE- 65

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKT 244
           +P I + +L D +      G   I +   +  KPL       +   I G E  G L+ + 
Sbjct: 66  LPLIGVEDLKDIIPV----GCVPIAVDLIEGAKPLPDYKHPPRAFYIFGPE-DGTLKKEI 120

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
            +      ++   G +   N++ A  V LY  
Sbjct: 121 TDFCRETIYVPTNGCM---NLAAAVNVILYDR 149


>gi|296104218|ref|YP_003614364.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058677|gb|ADF63415.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 241

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAEQAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|297243865|ref|ZP_06927795.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD]
 gi|296888286|gb|EFH27028.1| SpoU class rRNA methylase [Gardnerella vaginalis AMD]
          Length = 229

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G+ +R          +            L ++     +    +   N  + ++ M 
Sbjct: 85  PGNTGSAIRLCAVTGTILHLVEPLGFNLHDTKLRRAGLDYHDMAHVVLHPNFENLVESMP 144

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIALILGAE-GKGLRP--KTQE--TATSMAHLHMPG 258
           +   + I  ++++ K   +        L+ G E G  +                 L M  
Sbjct: 145 NS--RIIAFTANATKLYTEIEYKSNDILLFGPEPGD-IPDPMDVMAGPHVAEQVRLPMRP 201

Query: 259 IIKALNVSNAAAVALYITQNHFA 281
            +++LN++N A++A+Y       
Sbjct: 202 SLRSLNLTNCASIAVYEAWRQLG 224


>gi|157144530|ref|YP_001451849.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
 gi|166234834|sp|A8AD50|TRMJ_CITK8 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|157081735|gb|ABV11413.1| hypothetical protein CKO_00249 [Citrobacter koseri ATCC BAA-895]
          Length = 243

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L    +     +G S+ S+    P+            E  N  +AL+ G E  GL  
Sbjct: 63  VDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAVNTPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|332289843|ref|YP_004420695.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
 gi|330432739|gb|AEC17798.1| putative RNA methyltransferase [Gallibacterium anatis UMN179]
          Length = 248

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL   + P NIG+  R+        +          +      ++GA + +     +S+
Sbjct: 8   IVLVETSHPGNIGSAARAMKTMGLSQLYLVSPKVLP-NEESIALSAGADDVVKQAHIVSS 66

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN-------------DKIALILGAEGKGLR 241
             +A+          IG S+ ++      +                K+A++ G E  GL 
Sbjct: 67  FEEAIADCS----LVIGTSARARHLTTTAVTPRDCGELAIVRSAHGKVAIVFGRERIGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +         ++       +LN++ A
Sbjct: 123 NEELLKCHYHLNIPANPEYSSLNLAMA 149


>gi|297567088|ref|YP_003686060.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
           DSM 9946]
 gi|296851537|gb|ADH64552.1| RNA methyltransferase, TrmH family, group 1 [Meiothermus silvanus
           DSM 9946]
          Length = 253

 Score = 47.3 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 33/173 (19%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT-------KRYSPSESAV 175
              LD++R     +VL    +P N+GA+ R+   F    +          +      +A 
Sbjct: 3   PSLLDSIR-----VVLVSPQEPMNVGAVARAMRNFGLGDLWLVAPEPTVAETLEAPLNAK 57

Query: 176 LAKSASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLE------------- 221
               A  A   +   R S  L +A+Q         +G +  S+                 
Sbjct: 58  AYHLAVRAEVILDQARRSKTLLEAVQDC----VLVVGTTVRSRDVYPGSLVSPRTLTPQV 113

Query: 222 -QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
            +  +  K+AL+ G E  GL     + A  +  +        LN++ A  V L
Sbjct: 114 LKAAQRGKVALVFGRETFGLTNDELDLAQYILRIPTAPEQTNLNLAQA--VLL 164


>gi|269467901|gb|EEZ79640.1| rRNA methylase [uncultured SUP05 cluster bacterium]
          Length = 245

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 25/163 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +V+ +  +P NIGA  R+    +   +          SAV    ASGA + +   +    
Sbjct: 13  VVMVNTTEPGNIGAAARAMKNMNLSKLYLVNPKGYP-SAVATARASGADDLLANAVVCET 71

Query: 195 LTDALQ--------KMHSWGFQ-----TIGLSSDSKKPLEQEIKNDK--IALILGAEGKG 239
           L +ALQ               +      +G  S+    ++Q    +   ++++ G E  G
Sbjct: 72  LEEALQGSHLVIGASARQRNIKWKQMDVVGACSE----IQQATTTEGQEVSVVFGTEKYG 127

Query: 240 LRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYITQNHFA 281
           L  +  +    +  +   P    +LNV  A+A+ ++  QN+ +
Sbjct: 128 LTNEELDLCQILMTIPGNPNYF-SLNV--ASAIQVFAYQNYIS 167


>gi|126736426|ref|ZP_01752167.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
 gi|126713964|gb|EBA10834.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp. CCS2]
          Length = 246

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKM-- 202
           NIGA  R    F  D +          +      ASGA   +   +I  +   A+     
Sbjct: 20  NIGAAARGMWNFGLDRMRIIAPRDGWPNQKAVAMASGAGRLLDEAQIFDDTAGAIADCDY 79

Query: 203 ------HSWGFQTIGLSSDSK--KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                    G   + L+ ++       +  +  K+A++ G E  G+       A ++  +
Sbjct: 80  VYATTARPRGLTKLVLTPEAAMQDARARAAQGQKVAVMFGPERSGMENDDIARANAIISV 139

Query: 255 HMPGIIKALNVSNAAAVAL--YITQN 278
            +     +LN++    V L  Y  Q 
Sbjct: 140 PVNPDFPSLNLAQC--VLLTGYEWQR 163


>gi|154343195|ref|XP_001567543.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 672

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 43/147 (29%)

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  +   +  RY P +     K A+ A    P + + N  D  Q +           +D 
Sbjct: 144 FGEEAYFSPPRYPPFDHG---KIATVAPSESPLVALENFADRAQSVMRTRLPIPAAQNDG 200

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQET----------------------------- 247
                         L++G E  G+R     T                             
Sbjct: 201 GIR-----------LVVGHENWGVRRSLLRTKDVTTPVPMTDPTCATAPAGISESKSAPV 249

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALY 274
           A  + ++   G   +LNV  +  +AL+
Sbjct: 250 ADMVVYIPQYGTTSSLNVVTSLGIALF 276



 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++ ++  D  N G ++RSA AF  D I    R   +    +     G+  + P + +
Sbjct: 431 GLSVLYENEYDQRNFGGLIRSANAFLVDYIFYVGRRKVNVVGAV-----GSHHYTPPVYL 485

Query: 193 SNLTDA 198
             L DA
Sbjct: 486 GALPDA 491


>gi|209549544|ref|YP_002281461.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535300|gb|ACI55235.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 276

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           ++L       NIG + R+   F    +          +     +AS A   I   ++   
Sbjct: 17  IILVEPQMGENIGMVARAMANFGLAELRLVNPRDGWPNEKALATASKADHVIAATKVYDT 76

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQEIK-----------NDKIALILGAEGKGL 240
           L  A+  ++         ++   D  KP+   +             +   ++ G E  GL
Sbjct: 77  LEQAVADLN----FVYATTARERDGYKPVRSPVIAAETLRAKFRVGEGTGILFGRERWGL 132

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
             +    A  +    +     +LN++ A  V L
Sbjct: 133 TNEEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|83313186|ref|YP_423450.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 gi|82948027|dbj|BAE52891.1| Predicted rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 111

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 32/77 (41%)

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           Y R ++       + + G + + L++      ++        +++G E  G+ P   + A
Sbjct: 9   YTRHTSWEVFAATLAAQGRRLVLLTTGGAVRHDRFPFAPGDTIMVGRESCGVPPDVVDRA 68

Query: 249 TSMAHLHMPGIIKALNV 265
            +   + M    ++LNV
Sbjct: 69  EARIRIPMQVGARSLNV 85


>gi|118595209|ref|ZP_01552556.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
 gi|118440987|gb|EAV47614.1| tRNA/rRNA methyltransferase [Methylophilales bacterium HTCC2181]
          Length = 154

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R  V       I        +   + ++     +        N 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCVNTKSSLHIIKPMGFTLDEKPVRRAGLDYHDMANVKVYDNY 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR--PKTQETATSMAH 253
            +   ++ +   +   +++ S               I G E +GL       +   +   
Sbjct: 64  EECYAQLKNH--RHFAVTTKSDSHYHHFKYEAGDVFIFGPETRGLPLERLNDKRNQANIR 121

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFA 281
           + M    +++N+SN  A+ ++       
Sbjct: 122 VPMVASNRSMNLSNTVAIVIFEAWRQIN 149


>gi|152971395|ref|YP_001336504.1| tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895989|ref|YP_002920725.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330007729|ref|ZP_08306055.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
 gi|166234837|sp|A6TCF3|TRMJ_KLEP7 RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|150956244|gb|ABR78274.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548307|dbj|BAH64658.1| hypothetical tRNA/rRNA methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328535342|gb|EGF61825.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella sp. MS
           92-3]
          Length = 244

 Score = 47.3 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEGQHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|212710634|ref|ZP_03318762.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
           30120]
 gi|212686715|gb|EEB46243.1| hypothetical protein PROVALCAL_01700 [Providencia alcalifaciens DSM
           30120]
          Length = 243

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL   +   N+G+  R+        +         +S  +A  ++GA + I     + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVEPDSHSIA-LSAGASDVIGNAKVVKS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           L +AL+         IG S+ S+                 ++ K+  +A++ G E  GL 
Sbjct: 66  LDEALEGCK----LVIGTSARSRTLSWPMVEPRECGVKSVEQAKDAPVAIVFGRERVGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +      ++       +LN++ A
Sbjct: 122 NEELQRCNYHLYIPTNPEYGSLNLAMA 148


>gi|157870403|ref|XP_001683752.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126818|emb|CAJ05432.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 471

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN--AAAVALYIT 276
           L+LG E  GL  +  +      ++   G + +L  S   A  +A + T
Sbjct: 140 LVLGME-NGLSQEVADACDLCTYIPQYGSVGSL--SMLSALGIAAHST 184



 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA--LEHIPYIRI 192
           +++ + + D  NIGA++R+A AF+C+ +    R          + A G   + ++P+   
Sbjct: 254 VLIYNELGD-RNIGAVIRNANAFNCEYVAIVNRR-----RFNRRGALGTHKVMNVPFFET 307

Query: 193 SNLTDALQKMHSWGFQTI 210
            N   A Q    +    +
Sbjct: 308 VNDKAARQLFEGYEVWLL 325


>gi|227544885|ref|ZP_03974934.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300909895|ref|ZP_07127355.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185159|gb|EEI65230.1| SpoU family RNA methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300892543|gb|EFK85903.1| TrmH family RNA methyltransferase [Lactobacillus reuteri SD2112]
          Length = 169

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 5/140 (3%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+    + +  +       ++   + ++     + +      +L   ++ + 
Sbjct: 13  PANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHEDLPSFMKTIP 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETATSM-AHLHMP-GI 259
               +   +S  +           +     + G E  GL  +  +        +      
Sbjct: 73  DIN-RLYIVSKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPENAIRIPQNDNN 131

Query: 260 IKALNVSNAAAVALYITQNH 279
           I+ALN+SN+AA+ +Y     
Sbjct: 132 IRALNLSNSAAIVIYEVLRQ 151


>gi|262040271|ref|ZP_06013522.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042380|gb|EEW43400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 244

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEGQHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|159899747|ref|YP_001545994.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892786|gb|ABX05866.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 241

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 219 PLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            L        +A + G E +GL     E  + +  + +     +LN+++A  +ALY  +
Sbjct: 102 TLTALAATAPVAFVFGREDRGLDNAAIEQCSQLISIPVDPSYPSLNLADAVLLALYTIR 160


>gi|78184293|ref|YP_376728.1| tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
 gi|78168587|gb|ABB25684.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. CC9902]
          Length = 253

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 17/161 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-I 192
           +++VL     P NIG++ R    F+ + +          S    + A    E +   +  
Sbjct: 1   MVVVLVEPAGPLNIGSVARLCANFNVEELRLVAPRCDHLSEPSLQMAVHGREMLHSAKLY 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLE---------------QEIKNDKIALILGAEG 237
             L  A+         + G       PL                +  +   IA++ G E 
Sbjct: 61  PTLLSAIGDCRRS-VASCGRIDHGAIPLHSPTDALTWLLARPTPEPHQPGPIAVVFGRED 119

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           +GL          +  LH      +LN+S++  + L+    
Sbjct: 120 RGLSNDELRLCQRVLTLHSGSDYPSLNLSHSVGIVLHDMAR 160


>gi|268593202|ref|ZP_06127423.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rettgeri DSM 1131]
 gi|291311250|gb|EFE51703.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rettgeri DSM 1131]
          Length = 243

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 24/157 (15%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           LD +R     +VL   +   N+G+  R+        +         +S  +A  ++GA +
Sbjct: 2   LDNIR-----IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVEPDSHSIA-LSAGASD 55

Query: 186 HI-PYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIAL 231
            I     +  L +AL+         IG S+ S+                 ++ K   +A+
Sbjct: 56  VIGNATIVKTLDEALEGCK----LVIGTSARSRTLSWPMVEPRECGVKSVEQSKESPVAI 111

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           + G E  GL  +  +      ++       +LN++ A
Sbjct: 112 VFGRERVGLTNEELQKCQYHLYIPTNPEYGSLNLAMA 148


>gi|90411824|ref|ZP_01219833.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90327386|gb|EAS43750.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 157

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G++LR++  +  + +  T             +    + +IP I +  L D +    
Sbjct: 19  PENVGSVLRASGCYGVNSVFYTGTRYDLAKQFCTDT-KNVINNIPLIGVKELKDIIPV-- 75

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIK 261
             G   + +   +  KPL +    ++   I G E  G L+ +  +      ++   G + 
Sbjct: 76  --GCTPVAVDLIEGAKPLPEYKHPERAFYIFGPE-DGTLKKEITDFCRDTIYVPTKGCM- 131

Query: 262 ALNVSNAAAVALYIT 276
             N++ A  V LY  
Sbjct: 132 --NLAAAVNVILYDR 144


>gi|145350500|ref|XP_001419642.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579874|gb|ABO97935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 344

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 54/193 (27%), Gaps = 53/193 (27%)

Query: 137 VLDHVNDPHNIGAILR----------------SAVAFSCDGIITTKRYSPSESAVLAKSA 180
           VL     P N+GA  R                SA     D        +P       K A
Sbjct: 4   VLCAPEGPLNVGAAARVIQNFSLPSSLRVVRPSASVLRDDD---DGASAPRLHEDAYKFA 60

Query: 181 SGALEHIP--YIRISNLTDALQKMH---------SWGFQTIGLSSDSKKPLEQEIKNDKI 229
             A   +     R  ++ +A+ +                 + L +  +K  ++  +  K 
Sbjct: 61  VHAKWMLDDCCARGESVLEAVAEASLVVATTARPRENLPLLTLGAACEKMRDEIARGGKC 120

Query: 230 ALILGAEGKGLRPKTQETATSMAHLH---------MPG--------IIK------ALNVS 266
           A++ G E  GL  +  E A     +          M           +       +LN+ 
Sbjct: 121 AILFGNERTGLTNEELELAEFGVSIPTSATVGTSAMARRNKYSGGAGVDGSQTATSLNLG 180

Query: 267 NAAAVALYITQNH 279
            A  V  Y   + 
Sbjct: 181 MAVGVVAYELFSQ 193


>gi|153835375|ref|ZP_01988042.1| LasT protein [Vibrio harveyi HY01]
 gi|156973366|ref|YP_001444273.1| rRNA methylase [Vibrio harveyi ATCC BAA-1116]
 gi|148868097|gb|EDL67263.1| LasT protein [Vibrio harveyi HY01]
 gi|156524960|gb|ABU70046.1| hypothetical protein VIBHAR_01053 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V  ++ + A       + + +
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVL----VDPQCEVDDQTLALAAGAGDIAQNATV 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGLR 241
              L++        +G S+ S+  LE  +                  +AL+ G E  GL 
Sbjct: 63  VSTLEEAIEDCGLVVGSSARSRT-LEWPMLEPRECGEKFAVEGQKHPVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
               +       +       +LN++ A
Sbjct: 122 NDELQKCHYHVCIPANPEYSSLNLAMA 148


>gi|149914927|ref|ZP_01903456.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
 gi|149811115|gb|EDM70952.1| RNA methyltransferase TrmH, group 1 [Roseobacter sp. AzwK-3b]
          Length = 248

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 23/150 (15%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKMHS 204
           NIGA  R+   F  D +          +      ASGA   +   +++ ++ +A+   H 
Sbjct: 20  NIGAAARAMWNFGLDRMRLVAPRDGWPNPKAVAMASGAGRLLDEAQLTADVAEAVADCH- 78

Query: 205 WGFQTIGLSSDSK---KPL-----------EQEIKNDKIALILGAEGKGLRPKTQETATS 250
                +  ++ ++   KP+           E+    +++A++ G E  GL  +    A +
Sbjct: 79  ---FVMATTARARGLTKPVFSPEHAMQVAAERIAAGERVAVLFGPERAGLENEDIAKANA 135

Query: 251 MAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           + ++ +     +LN++    V L  Y  + 
Sbjct: 136 IINVPVNPDFPSLNLAQC--VLLTGYEWRR 163


>gi|323499943|ref|ZP_08104902.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
           21326]
 gi|323315184|gb|EGA68236.1| RNA methyltransferase, TrmH family protein [Vibrio sinaloensis DSM
           21326]
          Length = 241

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +   LA +A  +        +S+L
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSIDEQALALAAGASDIAENATIVSSL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            +A+          +G S+ S+                 +E +N  +AL+ G E  GL  
Sbjct: 67  AEAVADCA----LVVGSSARSRTLEWPMLEPRECGQKFVEEGQNAPVALVFGRERTGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
              +T      +       +LN++ A
Sbjct: 123 DELQTCHFHVCIPANPEYSSLNLAMA 148


>gi|59711737|ref|YP_204513.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
 gi|197335716|ref|YP_002155925.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
 gi|59479838|gb|AAW85625.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
 gi|197317206|gb|ACH66653.1| 23S rRNA methyltransferase [Vibrio fischeri MJ11]
          Length = 152

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+++R+A  +  + +  T +           + S  L ++P I + +L D +    
Sbjct: 16  PENVGSVMRAAGCYGVNSVFYTGKRYDIAKQFCTDTKSQHL-NLPLIGVEDLRDIVP--- 71

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIK 261
                 + +   +  KPL       +   I G E  G L+ +  +      ++   G + 
Sbjct: 72  -LDCVPVAVDLIEGAKPLPDYKHPPRAFYIFGPE-DGTLKKEITDFCRETIYVPTNGCM- 128

Query: 262 ALNVSNAAAVALYIT 276
             N++ A  V +Y  
Sbjct: 129 --NLAAAVNVIMYDR 141


>gi|157371864|ref|YP_001479853.1| RNA methyltransferase [Serratia proteamaculans 568]
 gi|157323628|gb|ABV42725.1| RNA methyltransferase, TrmH family, group 1 [Serratia
           proteamaculans 568]
          Length = 244

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+   +A A    G+      +P         A  A      I  + +
Sbjct: 7   IVLVETSHTGNMGS---TARAMKTMGLTNLYLVNPLIKPDSQAIAL-AAGASDVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRP 242
            D L    +     +G S+ S+      ++                +AL+ G E  GL  
Sbjct: 63  VDTLDDAIAGCSLVVGTSARSRTLPWPMLEPRECGIRAVHEGEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVR 157


>gi|269962423|ref|ZP_06176773.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
 gi|269832919|gb|EEZ87028.1| RNA methyltransferase, TrmH family [Vibrio harveyi 1DA3]
          Length = 239

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V  ++ + A       + + +
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVL----VDPQCEVDEQTLALAAGAGDIAQNAAI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGLR 241
              L++        +G S+ S+  LE  +                  +AL+ G E  GL 
Sbjct: 63  VSTLEEAIEDCGLVVGSSARSRT-LEWPMLEPRECGEKFAVEGQKHPVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
               +       +       +LN++ A
Sbjct: 122 NDELQKCHYHVCIPANPEYSSLNLAMA 148


>gi|261335562|emb|CBH18556.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 539

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 17/89 (19%)

Query: 204 SWGFQTIGLS--SDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQET------------- 247
           +  F  + L   +   + L     +  +A L++G E +G+  K  E              
Sbjct: 134 AENFPLVALENFTHRSQSLFTCRISS-VARLLIGHENRGVSSKYIECDNATISDESDGQC 192

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           A  + ++   G I +LNV  +  +AL+  
Sbjct: 193 ADCVVYVPQYGTISSLNVVTSMGIALFYA 221



 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++  +  D  N+G I+RSA AF  D I    R   +    +     G   + P   +
Sbjct: 321 GLSVLCQNEIDLRNLGGIVRSANAFLVDNIFYFGRRKINVVGTV-----GTQHYTPPTYL 375

Query: 193 SNLTD 197
            +L +
Sbjct: 376 GDLFE 380


>gi|74025972|ref|XP_829552.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834938|gb|EAN80440.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 539

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 17/89 (19%)

Query: 204 SWGFQTIGLS--SDSKKPLEQEIKNDKIA-LILGAEGKGLRPKTQET------------- 247
           +  F  + L   +   + L     +  +A L++G E +G+  K  E              
Sbjct: 134 AENFPLVALENFTHRSQSLFTCRISS-VARLLIGHENRGVSSKYIECDNATISDESDGQC 192

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           A  + ++   G I +LNV  +  +AL+  
Sbjct: 193 ADCVVYVPQYGTISSLNVVTSMGIALFYA 221



 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L ++  +  D  N+G I+RSA AF  D I    R   +    +     G   + P   +
Sbjct: 321 GLSVLCQNEIDLRNLGGIVRSANAFLVDNIFYFGRRKINVVGTV-----GTQHYTPPTYL 375

Query: 193 SNLTD 197
            +L +
Sbjct: 376 GDLFE 380


>gi|260598924|ref|YP_003211495.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Cronobacter
           turicensis z3032]
 gi|260218101|emb|CBA32873.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ [Cronobacter
           turicensis z3032]
          Length = 246

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  +++
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNASI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            D L +  +     +G S+ S+    P+            E  +  +A++ G E  GL  
Sbjct: 63  VDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVSEAAHAPVAIVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQVVAYEVR 157


>gi|270264747|ref|ZP_06193012.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera 4Rx13]
 gi|270041430|gb|EFA14529.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera 4Rx13]
          Length = 244

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+   +A A    G+      +P         A  A      I  + +
Sbjct: 7   IVLVETSHTGNMGS---TARAMKTMGLTNLYLVNPLIKPDSQAIAL-AAGASDVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRP 242
            D L    +     +G S+ S+      ++                +AL+ G E  GL  
Sbjct: 63  VDTLDDAIAGCSLVVGTSARSRTLPWPMLEPRECGVRAVHEGEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYEVR 157


>gi|163746261|ref|ZP_02153619.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
           HEL-45]
 gi|161380146|gb|EDQ04557.1| RNA methyltransferase, TrmH family protein [Oceanibulbus indolifex
           HEL-45]
          Length = 272

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 17/176 (9%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVL 176
           E     +P+   +      +VL       NIGA  R+   F  D +          S   
Sbjct: 16  EARMTQTPSSPVLPAPIPAIVLVRPQMGENIGAAARAMWNFGLDHMRVVAPRDGWPSQSA 75

Query: 177 AKSASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSKKPLE-----------QEI 224
              ASGA   +   + S +L  AL     + F T     D  KP+            +  
Sbjct: 76  VAMASGAGRLLDEAQHSADLPSALGDC-DFTFATTARGRDLTKPVYSPEAAMKLAAEKIA 134

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
              ++A++ G E  GL  +    A ++  + +     +LN++    V L  Y    
Sbjct: 135 AGQRVAVLFGPERAGLENEDIAQANAIVSVPVNPKFASLNLAQC--VLLMSYEWMR 188


>gi|152973321|ref|YP_001338467.1| putative RNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958170|gb|ABR80200.1| putative tRNA/rRNA methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 228

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           +L ++L       N+GA  R+          I+ ++ +    +  +A  +   L+     
Sbjct: 2   RLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDG--IT 59

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDK------IALILGAEG 237
               L +A   +H   F     +    +            +  +K       AL+ G E 
Sbjct: 60  TYPTLAEA---LHDVDFTVATTARSRARFHYYATPQQLLPLLEEKAQWMNHTALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+    +V +Y  Q
Sbjct: 117 AGLTNEELALADVLTGVPMAADYPSLNLGQ--SVMVYCYQ 154


>gi|259907699|ref|YP_002648055.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224963321|emb|CAX54806.1| tRNA/rRNA methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283477553|emb|CAY73469.1| putative RNA methyltransferase [Erwinia pyrifoliae DSM 12163]
          Length = 241

 Score = 47.0 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVKPDSQAIALAAGAS----DVIGEAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  S     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDEAISGCSLVVGTSARSRSLPWPMLDPRECGLKSVEEGQQAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVR 157


>gi|324112605|gb|EGC06582.1| RNA methyltransferase [Escherichia fergusonii B253]
 gi|325495934|gb|EGC93793.1| RNA methyltransferase [Escherichia fergusonii ECD227]
          Length = 228

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 52/159 (32%), Gaps = 20/159 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIR 191
           +L ++L       NIGA  R+        +      +  E A     A G+ + I     
Sbjct: 2   RLTIILVAPARAENIGAAARAMKTMGFHEMRIVDSQAHLEPATRW-VAHGSGDIIDNIAV 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEGK 238
            S+L +A   +    F     +    K        +   +           AL+ G E  
Sbjct: 61  FSSLAEA---LQDVDFTIATTARSRAKFHYYATPTELVPLLEEKSSWMNHAALVFGREDS 117

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 118 GLTNEELALADILTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|312136457|ref|YP_004003794.1| RNA methyltransferase, trmh family, group 1 [Methanothermus
           fervidus DSM 2088]
 gi|311224176|gb|ADP77032.1| RNA methyltransferase, TrmH family, group 1 [Methanothermus
           fervidus DSM 2088]
          Length = 231

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 36/154 (23%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSAS-GALEHIPYIRISNLTDALQKM- 202
            NIG + R+   F    +I            L+K A   A+     I+ S + ++L KM 
Sbjct: 16  GNIGFMARAMKNFGLKKLILINPC------KLSKEAYYHAVHAKDIIKNSKVYESLNKML 69

Query: 203 -HSWGFQTIGLSS--DSKKPLEQ---------EIKNDKIALILGAEGKGL-RPKTQETAT 249
                   +G S      + +E+         E      A++ G E  GL   + +    
Sbjct: 70  EKENINLLVGTSGVVAGDRNIERISVTPEYLAENIQKNTAILFGREDHGLYSHELR-MCD 128

Query: 250 SMAHLH-------MPGIIKALNVSNAAAVALYIT 276
            +  +        M       NVS+AAAV  Y  
Sbjct: 129 LILTIPTSKEYPIM-------NVSHAAAVIFYEL 155


>gi|330826303|ref|YP_004389606.1| TrmH family RNA methyltransferase [Alicycliphilus denitrificans
           K601]
 gi|329311675|gb|AEB86090.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
           denitrificans K601]
          Length = 270

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 63/189 (33%), Gaps = 42/189 (22%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALE 185
           A   ++ +++    +   N+GA  R+      D ++      P+        + ASGAL+
Sbjct: 9   AFMKTRFILI--QTSHAGNVGAAARAMKTMGFDDLVLVAPRWPNVLRKEETIQRASGALD 66

Query: 186 HIPYIR-ISNLTDALQ--------------------------------KMHSWGFQTIGL 212
            +   R ++ L +AL                                 ++ + G + I  
Sbjct: 67  VLERARIVATLDEALDGMSHLCATAMTPRDFGPPTRTPRQHFEMLLKNELQALGGRAI-- 124

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
             ++   +  E ++  +A + G+E  G+  +          +       +LN+  A  V 
Sbjct: 125 --EADSAINPEPESG-VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVV 181

Query: 273 LYITQNHFA 281
            Y  +    
Sbjct: 182 AYEWRQALG 190


>gi|113954680|ref|YP_730178.1| RNA methyltransferase [Synechococcus sp. CC9311]
 gi|113882031|gb|ABI46989.1| RNA methyltransferase, TrmH family, group 1 [Synechococcus sp.
           CC9311]
          Length = 243

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 21/161 (13%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI- 192
           L +VL     P N+G++ R    ++   +         +     + A      + +  I 
Sbjct: 3   LAVVLVEPAGPLNVGSVARLCANYNIQDLRLVAPRCDPDDPEAVRMAVHGDAVLQHAAIF 62

Query: 193 SNLTDALQKMHSWGFQTIGLSS---DSKKPLEQ------EIKND-----KIALILGAEGK 238
            +L +A+        Q +         + PL+        I++      + AL+ G E +
Sbjct: 63  PSLIEAVADCQ----QVVASCGRIDHGEIPLQSPEEIAPWIQSGRSQGLRSALVFGREDR 118

Query: 239 GLRPKTQETATSMAHLHMPGII-KALNVSNAAAVALYITQN 278
           GL       +  +  LH  G +  +LN+S+A AV L+  + 
Sbjct: 119 GLSNDELLISHRVFKLH-TGDVYPSLNLSHAVAVVLHELER 158


>gi|32265877|ref|NP_859909.1| rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC 51449]
 gi|32261926|gb|AAP76975.1| predicted rRNA methylase (SpoU class) [Helicobacter hepaticus ATCC
           51449]
          Length = 156

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 8/148 (5%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I R  VA      +       +    L ++     +H+     ++L
Sbjct: 6   IVLVQPQIPQNTGNIGRLCVATDSVLHLIHPLGFSTTQKELKRAGLDYWQHLQVYEWADL 65

Query: 196 TDALQKM---HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
                         F     S+ +++       +    L  G E  GL      T     
Sbjct: 66  NTFWHSYPPSKRHFFF----STKAQQLYYDADFSQGGFLYFGREDAGLNEDILHTYQKQV 121

Query: 253 -HLHMPGIIKALNVSNAAAVALYITQNH 279
             L M   ++++N++ +   ALY     
Sbjct: 122 YKLPMKAGVRSINLATSVGAALYEGVRQ 149


>gi|304391439|ref|ZP_07373381.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
           R2A130]
 gi|303295668|gb|EFL90026.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Ahrensia sp.
           R2A130]
          Length = 261

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 21/154 (13%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L +     NIG   R+   F    +          + +   +A+ A   I  +++ +
Sbjct: 16  VVILVNPQMGENIGGAARAMANFGLAELRLVDPRDGWPNPIAKANAAKADHIIDNVQVFD 75

Query: 195 L-TDALQKMHSWGFQTIGLSSDSKKPL--------------EQEIKNDKIALILGAEGKG 239
           L  DAL  +          ++  ++ L               +    ++  ++ G E  G
Sbjct: 76  LLEDALADLQ----FVYATTARQREMLKPVRGPAEAASTLRTRHRAGERTGILFGRERAG 131

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           L       A  +    +     +LN++ A  V L
Sbjct: 132 LESVEVALADEIVTFPVNPAFASLNIAQA--VLL 163


>gi|197335335|ref|YP_002155372.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
 gi|197316825|gb|ACH66272.1| RNA methyltransferase TrmH, group 1 [Vibrio fischeri MJ11]
          Length = 241

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        E  V  ++ + A         + +
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLTNMVL----VAPECEVDGQAIALAAGASDIANNARV 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  S     IG S+ S+                 +E     IA + G E  GL  
Sbjct: 63  VDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPTHPIAFVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
           +  +       +       +LN++ A
Sbjct: 123 EELQKCHFHVCIPANPEYSSLNLAMA 148


>gi|42524890|ref|NP_970270.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39577100|emb|CAE78329.1| RNA methyltransferase, TrmH family, group 1 [Bdellovibrio
           bacteriovorus HD100]
          Length = 261

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 20/153 (13%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGA  R+      + +I               +A+G          ++  + +++   
Sbjct: 18  RNIGATSRAMSNMGIEKLILIDPKCEITYEAQQAAATGQTGLQNRTTYASWDEFMKQEPE 77

Query: 205 WGFQTIGLSSDSK-----------------KPLEQEIKNDKIA--LILGAEGKGLRPKTQ 245
              +    + D K                  P  Q   +      L+ G E  GL  +  
Sbjct: 78  S-IKVAFTARDGKGRQVRDVDEVLKDIADKAPQFQVESDVPYVVHLVFGPEDWGLAGEDL 136

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
           E A   A +   G   +LN++ A  + +Y  + 
Sbjct: 137 EHANFCACIPTFGDNWSLNLAQATLLGMYSLRR 169


>gi|59711222|ref|YP_203998.1| methyltransferase [Vibrio fischeri ES114]
 gi|59479323|gb|AAW85110.1| predicted methyltransferase [Vibrio fischeri ES114]
          Length = 241

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        E  V  ++ + A         + +
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLTNMVL----VAPECEVDGQAIALAAGASDIANNARV 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D L +  S     IG S+ S+                 +E     IA + G E  GL  
Sbjct: 63  VDTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGIKAIEEAPTHPIAFVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
           +  +       +       +LN++ A
Sbjct: 123 EELQKCHFHVCIPANPEYSSLNLAMA 148


>gi|20093840|ref|NP_613687.1| RNA-binding protein [Methanopyrus kandleri AV19]
 gi|19886766|gb|AAM01617.1| Predicted RNA-binding protein containing THUMP domain [Methanopyrus
           kandleri AV19]
          Length = 333

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 16/118 (13%)

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           ++R   A     +I  +    +      K   GA   I      +L +AL +        
Sbjct: 193 LIRITAALGLGSLILVEPNRDAVRGAEEKV--GASSLIDLRIEEDLKEALAEFD----VV 246

Query: 210 IGLSSDS----KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL------HMP 257
           +GL   +     + L      ++I L+ G+E KGL  + +E A  + HL       M 
Sbjct: 247 VGLHPTAPNAESELLRAVEGANQICLLTGSETKGLSREAKELADVLVHLGPTTAEPMR 304


>gi|145341114|ref|XP_001415660.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575883|gb|ABO93952.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 445

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 30/141 (21%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS------- 214
           ++ ++  +        + A  A + +         DA + +    F  +  ++       
Sbjct: 134 VLGSEARTTPLCEEAMRYAC-AADWL-LADAERCDDAEEALRGCSF-VLATTARPRSGTP 190

Query: 215 -----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGII------- 260
                ++ + + +E K  K+A++ G E  GL       A +   +     G I       
Sbjct: 191 LMTAREAAERVREEAKRGKVAVLFGNERTGLTNDELSWAHAAVAIPTAGAGKICRKSLKY 250

Query: 261 ------KALNVSNAAAVALYI 275
                  +LN+S+A  +  Y 
Sbjct: 251 TGGTGPTSLNLSHAVGILAYE 271


>gi|320654588|gb|EFX22600.1| putative RNA methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 228

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++L       NIGA  R+        +               + A G+ + I  I++
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPATRRVAHGSGDIIDNIKV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKG 239
                  + +H   F     +    K            +  +K       AL+ G E  G
Sbjct: 61  --FPTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 119 LTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|54308633|ref|YP_129653.1| TrmH family RNA methyltransferase [Photobacterium profundum SS9]
 gi|46913062|emb|CAG19851.1| putative RNA methyltransferase, TrmH family [Photobacterium
           profundum SS9]
          Length = 157

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G++LR++  +  + +  T             +    + +IP I +  L D +    
Sbjct: 19  PENVGSVLRASGCYGVNSVFYTGTRYDLAKQFCTDT-KNVINNIPLIGVKELKDIIPV-- 75

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIK 261
             G   I +   +  KPL +    ++   I G E  G L+ +  +      ++   G + 
Sbjct: 76  --GCTPIAVDLIEGAKPLPEYKHPERAFYIFGPE-DGTLKKEITDFCRDTIYVPTKGCM- 131

Query: 262 ALNVSNAAAVALYIT 276
             N++ A  V LY  
Sbjct: 132 --NLAAAVNVILYDR 144


>gi|323171419|gb|EFZ57066.1| hypothetical protein ECLT68_4062 [Escherichia coli LT-68]
          Length = 268

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                   ++ +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|183599756|ref|ZP_02961249.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
 gi|188022017|gb|EDU60057.1| hypothetical protein PROSTU_03261 [Providencia stuartii ATCC 25827]
          Length = 243

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L   +   N+G+  R+        +         +S  +A  ++GA + I     +++
Sbjct: 7   IILVETSHTGNMGSTARAMKTMGLSNLYLVNPQVQPDSHAIA-LSAGASDVIGNATIVNS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           L +AL+         IG S+ S+                  + K   +A+I G E  GL 
Sbjct: 66  LDEALEGCK----LVIGTSARSRTLSWPMVAPRECGEKSVMQAKTAPVAIIFGRERIGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +      ++       +LN++ A
Sbjct: 122 NEELQKCQYHLYIPTNPEYGSLNLAMA 148


>gi|309704911|emb|CBJ04264.1| putative RNA methyltransferase [Escherichia coli ETEC H10407]
          Length = 206

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                   ++ +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|297183287|gb|ADI19425.1| predicted rRNA methylase (spou class) [uncultured Pseudomonadales
           bacterium HF0500_12O04]
          Length = 156

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 12/146 (8%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  ++   +  T +     +           + IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYNVASVFYTGKRY-ERARDFITDTKKVHQDIPLIGIDDLKK 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            +      G         +  +PL +    D+   I G E   L     E    + ++  
Sbjct: 70  IIP----LGCIPVAVEMVEGARPLPEYTHPDRAIYIFGPEDGSLGKDVLEWCEDVIYIPT 125

Query: 257 PGIIKALNVSNAAAVALYITQNHFAK 282
            G +   N++    V LY   +  AK
Sbjct: 126 TGCM---NLAATVNVVLY---DRLAK 145


>gi|294936466|ref|XP_002781773.1| hypothetical protein Pmar_PMAR012088 [Perkinsus marinus ATCC 50983]
 gi|239892722|gb|EER13568.1| hypothetical protein Pmar_PMAR012088 [Perkinsus marinus ATCC 50983]
          Length = 222

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 39/192 (20%)

Query: 119 APLLSPTLDAV-----RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           AP L P+L ++          L++ D +    N G+ILR +      G++       SE 
Sbjct: 15  APFLYPSLASLLAREGPMPHTLVMADSIEFSSNAGSILRHSYLLGVSGVLFGSYTGVSEH 74

Query: 174 AVLAKSASGALEHI---------PYIRISNLTDALQKMH-SWGFQT------IGLSSDSK 217
              +K+   +   +         P +   ++  A++++    G+               +
Sbjct: 75  Q--SKAWMRSSLRMSMCYKRGGCPVVPSCDILAAVEELKMRLGYTVCILGDGYITDDSCQ 132

Query: 218 KPLEQEIKND---------KIALILGAEGKGLRP--KTQETATSMAHLHM--PGIIKALN 264
            P     +           ++ LI G E +  R        A  +  +         + N
Sbjct: 133 IPRYDLSRPQTSGKFLEAPRLLLITGGESQ--RRADDLLCKADVLCEVPALPYSHF-SYN 189

Query: 265 VSNAAAVALYIT 276
           V  A  +AL+  
Sbjct: 190 VGCAVTLALFER 201


>gi|145589038|ref|YP_001155635.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047444|gb|ABP34071.1| RNA methyltransferase, TrmH family, group 1 [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 250

 Score = 46.6 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 13/154 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRIS- 193
           VL   + P N+G+  R+        +      +   S  A     ASGA++ +    +S 
Sbjct: 12  VLVETSHPGNVGSAARALKTMGFHDLRLVNPKTLDISTQAEAIALASGAVDVLETATVSG 71

Query: 194 NLTDALQKM--------HSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPK 243
           +L DA+Q              F    L  +S + L  E      ++A++ G E  GL  +
Sbjct: 72  SLEDAVQNCSLVLGLTSRDREFGPPALDWESARALISETVANQGQVAMVFGTERTGLENE 131

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                T    L+      +LN++ A  V  Y  +
Sbjct: 132 HLALCTHRVWLNANPDYPSLNLAQALMVCAYALR 165


>gi|83592035|ref|YP_425787.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
           11170]
 gi|83574949|gb|ABC21500.1| RNA methyltransferase TrmH, group 1 [Rhodospirillum rubrum ATCC
           11170]
          Length = 279

 Score = 46.6 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 21/153 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG + R+ +      +          +     SASGA   +   R    
Sbjct: 20  IVLVRPQLAENIGMVARAMLNCGLTALRLVAPREDWLAEKAIASASGADGLLREARFFET 79

Query: 196 TDA-LQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGL 240
           T+A +  ++    +    ++               +++   Q    ++ A++ G E  GL
Sbjct: 80  TEAAIADIN----RVYATTARRRDMIKRVLTPRGAAERLRTQVAAGERCAVMFGPERTGL 135

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                  A ++  + +     +LN++ A  V L
Sbjct: 136 SNDDVALADAIVEVPLNPAYCSLNLAQA--VLL 166


>gi|261212397|ref|ZP_05926682.1| rRNA methylase [Vibrio sp. RC341]
 gi|297580425|ref|ZP_06942352.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|260838328|gb|EEX64984.1| rRNA methylase [Vibrio sp. RC341]
 gi|297536071|gb|EFH74905.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 170

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S +++ L +   P N+GA++R+A  ++   +          +         + E I  + 
Sbjct: 5   STVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-RAVKFQTDTQNSHERIGLVE 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + +LT  L        + + +        L      ++   + G E   L  +  + A  
Sbjct: 64  MDDLTAGLD----SKVKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVDQAHH 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 120 VVYVPTHGCM---NLAATVNVVLY---DRLAK 145


>gi|218283693|ref|ZP_03489654.1| hypothetical protein EUBIFOR_02248 [Eubacterium biforme DSM 3989]
 gi|218215682|gb|EEC89220.1| hypothetical protein EUBIFOR_02248 [Eubacterium biforme DSM 3989]
          Length = 99

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKE 108
           + +YG + V + L N    I ++   +         +       V+      +DKI    
Sbjct: 1   MIVYGKN-VYSTLQNDMDSIEKVYVLQGLKDAKLLKSIQKSNLKVEYCNRAKLDKIA-NT 58

Query: 109 AVHQGLALETAPLLSPTLDAV 129
             H G+A++ + + + +++ +
Sbjct: 59  THHNGVAVKVSEIETYSIEQI 79


>gi|254437829|ref|ZP_05051323.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
 gi|198253275|gb|EDY77589.1| RNA methyltransferase, TrmH family [Octadecabacter antarcticus 307]
          Length = 257

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 21/163 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            Q  +VL       NIGA  R+   F  D +          +      ASGA   +    
Sbjct: 18  PQPTIVLIRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRLLDEAE 77

Query: 192 ISNLTDALQKMHSWGFQTIGLSS---DSKKPLE-----------QEIKNDKIALILGAEG 237
           +S+  D    +    +     ++   +  KP+            +  + +K+A+I G E 
Sbjct: 78  VSD--DVASGIADRTY-VYATTARPRELTKPVFSPEAAMRDAAARIARGEKVAVIFGPER 134

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
            G+       A ++  + +     +LN++    V L  Y  + 
Sbjct: 135 SGMDNSDIAHANAIITVPVNPDFPSLNLAQC--VLLVGYEWRR 175


>gi|91789152|ref|YP_550104.1| RNA methyltransferase TrmH [Polaromonas sp. JS666]
 gi|91698377|gb|ABE45206.1| RNA methyltransferase TrmH, group 1 [Polaromonas sp. JS666]
          Length = 268

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 22/154 (14%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--SAVLAKSASGALEHIPYIR-IS 193
           VL + +   N+GA  R+      D ++       +        + ASGAL+ +   R ++
Sbjct: 6   VLINTSHAGNVGAAARAMKVMGFDDLVLVAPRWANVLNREETIQRASGALDVLKNARIVA 65

Query: 194 NLTDALQKM----------HSWGFQTIG--------LSSDS-KKPLEQEIKNDKIALILG 234
            L +AL  M            +G  T          LS+D    P  + ++ D +A + G
Sbjct: 66  TLDEALDGMSHLCATAMTPRDFGPPTRAPREHFSKLLSNDEPSSPENKGLQPDSVAFLFG 125

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +E  G++            +       +LN+  A
Sbjct: 126 SERFGMQNDDVYRCHVALSIPTDPKFGSLNLGAA 159


>gi|221205615|ref|ZP_03578630.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2]
 gi|221174453|gb|EEE06885.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2]
          Length = 172

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L    DP NIG +LR+A  +    ++ + R         +     A  H+P I+  ++  
Sbjct: 34  LHQPKDPKNIGGVLRAAGCYDAALVVLSGRR----YQRASTDTQKAFRHLPVIQTDDVLS 89

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           A+              + +  PL      +    I G E   +  +       + ++   
Sbjct: 90  AIPV---GAVPIAVEFTTTATPLTDFKHPESAFYIFGPEDGSVPNQIVAKCRDVVYVPTA 146

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
             +   N++ A  V LY   +  AK
Sbjct: 147 YCM---NLAAAVNVLLY---DRLAK 165


>gi|310764793|gb|ADP09743.1| tRNA/rRNA methyltransferase [Erwinia sp. Ejp617]
          Length = 241

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTSLYLVNPLVKPDSQAIALAAGAS----DVIGEAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L +  S     +G S+ S+  P                     +AL+ G E  GL  
Sbjct: 63  VDTLDEAISGCSLVVGTSARSRSLPWPMLDPRQCGLKSVEEGQQAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIAANPEYSSLNLAMAVQIIAYEVR 157


>gi|332281315|ref|ZP_08393728.1| RNA methyltransferase [Shigella sp. D9]
 gi|332103667|gb|EGJ07013.1| RNA methyltransferase [Shigella sp. D9]
          Length = 235

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 22/162 (13%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIP 188
           N ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I 
Sbjct: 7   NMRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIK 66

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGA 235
                     ++ +H   F     +    K            +  +K       AL+ G 
Sbjct: 67  VF-----PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGR 121

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           E  GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 122 EDSGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 161


>gi|302341742|ref|YP_003806271.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
 gi|301638355|gb|ADK83677.1| tRNA/rRNA methyltransferase (SpoU) [Desulfarculus baarsii DSM 2075]
          Length = 251

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 13/164 (7%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             LD ++N  + +VL     P NIGA  R+       G+        ++  + A + +  
Sbjct: 4   ALLDLLQN--VFVVLVRPRVPENIGAAARAVANMGLGGLRLVDPADLTDKPMRALATAQG 61

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSD----------SKKPLEQEIKNDKIALIL 233
              +  + +S+   A          T     +          +   +    +   +A++ 
Sbjct: 62  QRVLESMTVSDSLAAALADCVAAAATTARLGERRGALIPPRQAAPEIMTWARRGPVAVVF 121

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           G E +GL  +  +      ++       +LN++ +  V  Y  +
Sbjct: 122 GPEDRGLSHEQVDLCRLSINIP-TSQASSLNLAQSVIVLAYELR 164


>gi|256026401|ref|ZP_05440235.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289764415|ref|ZP_06523793.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
 gi|289715970|gb|EFD79982.1| 23S rRNA methyltransferase [Fusobacterium sp. D11]
          Length = 127

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 95  TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            V  +  +++  +E   QG+ +          D    S  L++LD V+DP N+G I+R  
Sbjct: 72  VVTTKIFEELSSQE-NSQGVIIL---YNKKNNDLKSLSNNLVILDDVSDPGNLGTIIRIC 127


>gi|221199483|ref|ZP_03572527.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M]
 gi|221180768|gb|EEE13171.1| tRNA/rRNA methyltransferase [Burkholderia multivorans CGD2M]
          Length = 171

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L    DP NIG +LR+A  +    ++ + R         +     A  H+P I+  ++  
Sbjct: 33  LHQPKDPKNIGGVLRAAGCYDAALVVLSGRR----YQRASTDTQKAFRHLPVIQTDDVLS 88

Query: 198 ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
           A+              + +  PL      +    I G E   +  +       + ++   
Sbjct: 89  AIPV---GAVPIAVEFTTTATPLTDFKHPESAFYIFGPEDGSVPNQIVAKCRDVVYVPTA 145

Query: 258 GIIKALNVSNAAAVALYITQNHFAK 282
             +   N++ A  V LY   +  AK
Sbjct: 146 YCM---NLAAAVNVLLY---DRLAK 164


>gi|325002553|ref|ZP_08123665.1| RNA methyltransferase CspR [Pseudonocardia sp. P1]
          Length = 153

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 2/124 (1%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           + L     P N G ++R A     +  +        +   + ++     E    +  +  
Sbjct: 4   LALHTPEIPPNTGNVIRLAANTGAELHLIRPLGFSLDERAVRRAGLDYGELADVVVHAGT 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA--TSMAH 253
                 +   G +    ++ +         +    L+ G E  GL       A  T    
Sbjct: 64  DAFAAWVADAGARVYAFTTGAPVRYTDVAYSPGDVLLFGRESTGLPADVAGAAWVTGRVA 123

Query: 254 LHMP 257
           L M 
Sbjct: 124 LPMR 127


>gi|119386406|ref|YP_917461.1| RNA methyltransferase [Paracoccus denitrificans PD1222]
 gi|119377001|gb|ABL71765.1| RNA methyltransferase, TrmH family, group 1 [Paracoccus
           denitrificans PD1222]
          Length = 246

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 22/144 (15%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRI-SNLTDALQKMH 203
           NIGA  R+ + F    +          +      ASGA   +    R+ + L +A+  + 
Sbjct: 19  NIGAAARAMLNFGLTDMRLVAPRDGWPNPRAVAMASGAAGRVLDRARVFATLAEAMADVD 78

Query: 204 SWGFQTIGLSSDS--------------KKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
                    ++                    ++  +  ++A+I G E  GL  +    A 
Sbjct: 79  YA----YATTARGRELTKPVLTPATAMADARDRVAQGGRVAVIFGPERAGLENEDVARAN 134

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
           ++  + +     +LN++ A  V L
Sbjct: 135 AIITVPVNPDFPSLNLAQA--VLL 156


>gi|152995596|ref|YP_001340431.1| tRNA/rRNA methyltransferase SpoU [Marinomonas sp. MWYL1]
 gi|150836520|gb|ABR70496.1| tRNA/rRNA methyltransferase (SpoU) [Marinomonas sp. MWYL1]
          Length = 176

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 14/149 (9%)

Query: 140 HVNDP---HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL- 195
            + +P    N+G+++R+A  +  D ++ +       +A ++     A   IP I I +L 
Sbjct: 9   GLTNPKSTSNVGSVMRAAGCYQVDQVLYSGSRYD-RAAKMSTDTKKATSSIPLINIESLG 67

Query: 196 TDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAH 253
            D L +      + + +       PL      +K   I G E  G +  K  + A  +  
Sbjct: 68  VDNLIEAVDTDTKIVCVDLIQGATPLPAFNHPEKALYIFGPE-DGTIGQKIVDRADFVVF 126

Query: 254 LHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +   G +   N++ +  V LY   +  AK
Sbjct: 127 VPTVGCM---NLAASVNVLLY---DRLAK 149


>gi|13470359|ref|NP_101925.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14021098|dbj|BAB47711.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 303

 Score = 46.2 bits (109), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKM-- 202
           NIG + R+   F    +          S     +AS A   I  +++  +L  AL  +  
Sbjct: 25  NIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDAVKVFDDLASALADLNF 84

Query: 203 -------HSWGFQTIGLSSDSKKPLEQEI-KNDKIALILGAEGKGLRPKTQETATSMAHL 254
                     GF+ +    ++ + L        +  ++ G E  GL       A  +   
Sbjct: 85  VFATTARQRDGFKAVRGPVEAGRVLRARHGMGQRTGILFGRERFGLYNDEVGLADEIVTF 144

Query: 255 HMPGIIKALNVSNAA 269
            +     +LN++ AA
Sbjct: 145 PVDPDFSSLNIAQAA 159


>gi|304387338|ref|ZP_07369530.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
 gi|304338589|gb|EFM04707.1| RNA methyltransferase [Neisseria meningitidis ATCC 13091]
          Length = 272

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   LD +R     ++L   + P NIG+  R+        +                
Sbjct: 5   KPALPAYLDNIR-----IILTRTSHPANIGSAARAMKTMGLHKLTIVTPNLMATPMTENP 59

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSK- 217
                E     K        ASGA + +    I+ +L +AL         TI  +  S+ 
Sbjct: 60  PVFDPEYPQSFKLPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 113

Query: 218 ---------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+AL+ G E  GL  +  +    +  +   G    
Sbjct: 114 REITAPLQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDY 171

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 172 FSLNLAQAVQVVCYEIFSQ 190


>gi|323939780|gb|EGB35982.1| RNA methyltransferase [Escherichia coli E482]
          Length = 228

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                   ++ +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|253988841|ref|YP_003040197.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780291|emb|CAQ83452.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Photorhabdus
           asymbiotica]
          Length = 259

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 24/161 (14%)

Query: 128 AVRNSQLLMVLDHVN-------DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           A+  S  +++L+++           N+G+  R+        +         +S  +A SA
Sbjct: 10  ALITSPEVVMLENIRIILVETSHTGNMGSTARAMKTMGLTNLYLVNPLVQPDSHAIALSA 69

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKND 227
             +      I  + + D+L K  +     IG S+ S+                 Q  ++ 
Sbjct: 70  GAS----DVIGSATIVDSLDKALAGCELVIGTSARSRTLSWPMVEPRECGERSVQAAEHV 125

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +A++ G E  GL  +  +      ++       +LN++ A
Sbjct: 126 PVAIVFGRERVGLTNEELQKCHFHLNIPTNPEYSSLNLAMA 166


>gi|41615173|ref|NP_963671.1| hypothetical protein NEQ384 [Nanoarchaeum equitans Kin4-M]
 gi|40068897|gb|AAR39232.1| NEQ384 [Nanoarchaeum equitans Kin4-M]
          Length = 232

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 23/164 (14%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++++         NIGA+ R    F+ D  +   +    E A +    +  L        
Sbjct: 2   RVIVFFVEPEKVDNIGAMARVCKNFNADLYLINPKVDNYEKAFVVAKHAQDLLQKAIENK 61

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-----------KIALILGAEGKGLR 241
            N  D  +++      T G  ++    L   +K             K+ + +G E  GL 
Sbjct: 62  LNSIDEAKELVDISVGTTGKIANEYNVLRSPLKPWELAERFANSDIKLGIFIGRESIGLT 121

Query: 242 PKTQETATSMAHL------HMPGIIKALNVSNAAAVALYITQNH 279
            +       +  +       +      LN ++A A+ LY    H
Sbjct: 122 NEELSKMDFIVTIPANKEYPI------LNATHATAIILYELFKH 159


>gi|299116545|emb|CBN74733.1| hypothetical tRNA/rRNA methyltransferase [Ectocarpus siliculosus]
          Length = 220

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 49/186 (26%), Gaps = 49/186 (26%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM- 202
           P N G I R+ + F     +            + ++     EH+     +  T   + M 
Sbjct: 12  PANTGNIGRTCLGFGARLHLIKPLGFDLSEREVKRAGLDHWEHVDLAVHNTWTCFTESML 71

Query: 203 -----------HSWGFQTIGLSSD-SKKPLEQEIKNDK---------------------- 228
                             +         P+                              
Sbjct: 72  PVLGHNNSGGGGGGNIYLVSKRLKLGSTPIADVDFFAPTPKPPPIVAQPGGGAGELSSDT 131

Query: 229 ----------IALILGAEGKGLR---PKTQETATSMAHLHMPGII-KALNVSNAAAVALY 274
                     +AL+ G E  GL       +  A    +L M   + ++ N+SNA A+A+Y
Sbjct: 132 VGSSACSEGDVALVFGNEVDGLSGLEEGERGRALPAVYLPMRDDVIRSYNLSNAVAMAVY 191

Query: 275 ITQNHF 280
             +   
Sbjct: 192 EVERQR 197


>gi|171463671|ref|YP_001797784.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193209|gb|ACB44170.1| tRNA/rRNA methyltransferase (SpoU) [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 250

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 13/154 (8%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGI--ITTKRYSPSESAVLAKSASGALEHI-PYIRIS 193
           VL   + P N+G+  R+        +  I+ K      S      ASGA + +   +   
Sbjct: 12  VLVETSHPGNVGSAARALKTMGFSDLRLISPKIKDIGSSPEAIAFASGAADILEKSVESG 71

Query: 194 NLTDALQ--------KMHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPK 243
           +L   ++              F    +  +S + L      +  K+AL+ G E  GL  +
Sbjct: 72  SLASTVKGCSLVMGLTSRDREFGPPAMDWESARSLIASTVQRQGKVALLFGPERTGLDNE 131

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                T    L       +LN++ A  +  Y  +
Sbjct: 132 HLALCTHRVWLDANPNYPSLNLAQALMICAYTLR 165


>gi|194450554|ref|YP_002048619.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194408858|gb|ACF69077.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
          Length = 228

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+     C    I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGCTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
                   +  +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT-----LVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|262376214|ref|ZP_06069444.1| rRNA methylase [Acinetobacter lwoffii SH145]
 gi|262308815|gb|EEY89948.1| rRNA methylase [Acinetobacter lwoffii SH145]
          Length = 282

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +V+ +   P NIG+ LR+        ++     +      +   A+GA + I     +  
Sbjct: 18  IVMVNTTLPANIGSALRAMKTMGLSKLVLVAPKTYP-HPDIDALAAGATDLIEQIEIVET 76

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK---------------IALILGAEGKG 239
           L DA++          G S+ S+      +                   +A++ G E +G
Sbjct: 77  LEDAIKDCQI----VFGTSARSRTIPWPLLDVRPAAEKAMTAVVQDQQEVAILFGREDRG 132

Query: 240 LRPKTQETATSMAHLHM---PGIIKALNVSNAAAVALYITQ 277
           L  +    A     + +    G+   LNV+ A  V  Y  +
Sbjct: 133 LTNEELAMANYHLTIPVNTDYGV---LNVAQAIQVICYEMR 170


>gi|240102381|ref|YP_002958690.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
 gi|239909935|gb|ACS32826.1| RNA methyltransferase (spoU/TrmH) [Thermococcus gammatolerans EJ3]
          Length = 243

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 36/163 (22%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL     P NIG + R+   F    ++     +P+ S      A  A + +     +  
Sbjct: 14  VVLVEPEGPANIGMVARTMKNFGFSRLVL---VNPNLSEESYSYAVHARDVLKNATIVET 70

Query: 195 LTDALQKMHSWGFQTIGLSSD-------SKKPLEQEI-------KNDKIALILGAEGKGL 240
             +AL+        T+G +          + PL              ++ L  G E  GL
Sbjct: 71  FEEALELFD----LTVGTTGKPGRRFISYRAPLYPWELRETLKGYTGEVGLFFGRESIGL 126

Query: 241 RPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
           + +  E    +  +        M       N++ A AV LY  
Sbjct: 127 KNEELERLDLIVTIPTSEDYPVM-------NLAQAVAVILYEL 162


>gi|28897368|ref|NP_796973.1| RNA methyltransferase [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838065|ref|ZP_01990732.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
           AQ3810]
 gi|260363565|ref|ZP_05776394.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus K5030]
 gi|260876328|ref|ZP_05888683.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AN-5034]
 gi|260898599|ref|ZP_05907095.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
           Peru-466]
 gi|260899301|ref|ZP_05907696.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AQ4037]
 gi|28805580|dbj|BAC58857.1| RNA methyltransferase, TrmH family [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748532|gb|EDM59391.1| RNA methyltransferase TrmH, group 1 [Vibrio parahaemolyticus
           AQ3810]
 gi|308086963|gb|EFO36658.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Vibrio parahaemolyticus
           Peru-466]
 gi|308092944|gb|EFO42639.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AN-5034]
 gi|308106671|gb|EFO44211.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus AQ4037]
 gi|308112984|gb|EFO50524.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Vibrio
           parahaemolyticus K5030]
 gi|328472609|gb|EGF43472.1| RNA methyltransferase [Vibrio parahaemolyticus 10329]
          Length = 239

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +   LA +A  A        +S L
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVDPQCEVDEQTLALAAGAADIAQNAQVVSTL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGLR 241
            +A++     G   +G S+ S+  LE  +                  +AL+ G E  GL 
Sbjct: 67  EEAIE---DCGL-VVGSSARSRT-LEWPMLEPRECGEKFAVEGQKHPVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +       +       +LN++ A
Sbjct: 122 NEELQKCHYHVCIPANPEYSSLNLAMA 148


>gi|319784058|ref|YP_004143534.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169946|gb|ADV13484.1| RNA methyltransferase, TrmH family, group 1 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 304

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISNLTDALQKM-- 202
           NIG + R+   F    +          S     +AS A   I       +L  AL  +  
Sbjct: 27  NIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASRADHVIDAVTVFDDLASALADLNF 86

Query: 203 -------HSWGFQTIGLSSDSKKPLE-QEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                     GF+++    ++ + L  +     +  ++ G E  GL       A  +   
Sbjct: 87  VFATTARQRDGFKSVRGPVEAGRLLRARHAMGQRTGILFGRERFGLYNDEVGLADEIVTF 146

Query: 255 HMPGIIKALNVSNAA 269
            +     +LN++ AA
Sbjct: 147 PVDPDFSSLNIAQAA 161


>gi|296108951|ref|YP_003615900.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           infernus ME]
 gi|295433765|gb|ADG12936.1| RNA methyltransferase, TrmH family, group 1 [Methanocaldococcus
           infernus ME]
          Length = 226

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 34/154 (22%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD-ALQKMH 203
            N+G++ R    F    +          +      A  A + +   +     D A++ + 
Sbjct: 13  GNVGSVARVMKNFGFKELRIVGDR-KIINDEAKMMAVHAKDILEKAKFYETFDSAIEDLD 71

Query: 204 SWGFQTIGLSS--DSKKPLEQEIKNDK------------IALILGAEGKGLRPKTQETAT 249
                 I  S      + L++     +            I L+ G E  GL  +  +   
Sbjct: 72  ----FIIATSGARGGDRNLKRVPITPRELAEKIKEVRGNIGLVFGREDDGLYNEELDKCD 127

Query: 250 SMAHLH-------MPGIIKALNVSNAAAVALYIT 276
            +  +        M       N+S+A AV LY  
Sbjct: 128 LLVSIPTSEEYPIM-------NLSHAVAVILYEL 154


>gi|262190204|ref|ZP_06048480.1| rRNA methylase [Vibrio cholerae CT 5369-93]
 gi|262033901|gb|EEY52365.1| rRNA methylase [Vibrio cholerae CT 5369-93]
          Length = 170

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S +++ L +   P N+GA++R+A  ++   +          +         + E I  + 
Sbjct: 5   STVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-RAVKFQTDTQNSHERIGLVE 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + +LT  L        + + +        L      ++   + G E   L  +  + A  
Sbjct: 64  MDDLTAGLDSE----VKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVDQAHH 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N+S    V LY   +  AK
Sbjct: 120 VVYVPTHGCM---NLSATVNVVLY---DRLAK 145


>gi|238918601|ref|YP_002932115.1| RNA methyltransferase [Edwardsiella ictaluri 93-146]
 gi|238868169|gb|ACR67880.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella ictaluri
           93-146]
          Length = 238

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 42/145 (28%), Gaps = 18/145 (12%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHS 204
           N+GA  R+        +      +  ESA     A GA + +        L  AL+ +  
Sbjct: 15  NVGAAARAMKTMGFTSLRIVDSRADGESAARW-VAHGAGDILDGACHFDTLAQALEDI-- 71

Query: 205 WGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRPKTQETATSM 251
             F     +    +        +               AL+ G E  GL          +
Sbjct: 72  -DFSVASTARSRARFHYYCTPQELCAVLQEKQHWMANCALVFGREDSGLTNDELALVDLL 130

Query: 252 AHLHMPGIIKALNVSNAAAVALYIT 276
             + M     +LN+  A  V  Y  
Sbjct: 131 TGVPMAADYPSLNLGQAVMVFCYQL 155


>gi|170768660|ref|ZP_02903113.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
 gi|170122764|gb|EDS91695.1| RNA methyltransferase, TrmH family, group 1 [Escherichia albertii
           TW07627]
          Length = 228

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++L       NIGA  R+        +                 A G+ + I  I +
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAYLEPATRWVAHGSGDIIDNIAV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDK------IALILGAEGKG 239
            +  +  + +    F     +    K            +  +K      IAL+ G E  G
Sbjct: 61  FSTLE--EALQDVDFTVATTARSRAKYHYYATPVELVPLLAEKSAWMNHIALVFGREDSG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 119 LTNEELALADILTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|320539263|ref|ZP_08038933.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
 gi|320030655|gb|EFW12664.1| putative tRNA mC32/mU32 methyltransferase, SAM-dependent [Serratia
           symbiotica str. Tucson]
          Length = 244

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL   +   N+G+  R+        +         +S  +A  A+GA + I     +  
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLIKPDSQAIA-LAAGASDVIGNAALVDT 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           + DA+          +G S+ S+                 Q  ++  +AL+ G E  GL 
Sbjct: 66  VDDAINGCS----LVVGTSARSRTLPWPMLEPRECGVRAVQAGEHAPVALVFGRERVGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +       +       +LN++ A  +  Y  +
Sbjct: 122 NDELQKCHYHVAIPANPDYSSLNLAMAVQILAYELR 157


>gi|57641905|ref|YP_184383.1| TrmH family tRNA methyltransferase [Thermococcus kodakarensis KOD1]
 gi|3253066|dbj|BAA29043.1| spoU [Pyrococcus sp.]
 gi|57160229|dbj|BAD86159.1| probable tRNA/rRNA methyltransferase, SpoU family [Thermococcus
           kodakarensis KOD1]
          Length = 235

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 36/163 (22%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL     P NIG I R+   F    ++     +P+ +      A  A + +   + + +
Sbjct: 4   VVLVEPEGPANIGMIARTMKNFGFSRLVLI---NPNLTEESYAYAVHARDVLENALILDS 60

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK----------PLEQE----IKNDKIALILGAEGKGL 240
              AL+        T+G +    K          P E          ++ +  G E  GL
Sbjct: 61  FEKALELFD----FTVGTTGKPGKRFIPHRAPLMPWELVGLIKDYPGEVGIFFGRESIGL 116

Query: 241 RPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
           + +  +       +        M       N++ AAAV LY  
Sbjct: 117 KNEELDAMDVTLTIPTSEEYPVM-------NLAQAAAVVLYEL 152


>gi|157156588|ref|YP_001465924.1| putative RNA methyltransferase [Escherichia coli E24377A]
 gi|157163851|ref|YP_001461169.1| putative RNA methyltransferase [Escherichia coli HS]
 gi|170021638|ref|YP_001726592.1| putative RNA methyltransferase [Escherichia coli ATCC 8739]
 gi|188493074|ref|ZP_03000344.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|193070602|ref|ZP_03051540.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|254037414|ref|ZP_04871491.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|260858577|ref|YP_003232468.1| putative rRNA methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260871125|ref|YP_003237527.1| putative rRNA methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300918110|ref|ZP_07134722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300923539|ref|ZP_07139574.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|157069531|gb|ABV08786.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli HS]
 gi|157078618|gb|ABV18326.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E24377A]
 gi|169756566|gb|ACA79265.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli ATCC
           8739]
 gi|188488273|gb|EDU63376.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           53638]
 gi|192956085|gb|EDV86550.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           E110019]
 gi|226840520|gb|EEH72522.1| RNA methyltransferase [Escherichia sp. 1_1_43]
 gi|257757226|dbj|BAI28728.1| predicted rRNA methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257767481|dbj|BAI38976.1| predicted rRNA methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|284924581|emb|CBG37720.1| putative RNA methyltransferase [Escherichia coli 042]
 gi|300414694|gb|EFJ98004.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           115-1]
 gi|300420213|gb|EFK03524.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           182-1]
 gi|320200480|gb|EFW75066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           EC4100B]
 gi|323157707|gb|EFZ43812.1| hypothetical protein ECEPECA14_0401 [Escherichia coli EPECa14]
 gi|323176309|gb|EFZ61901.1| hypothetical protein ECOK1180_5003 [Escherichia coli 1180]
 gi|323935195|gb|EGB31558.1| RNA methyltransferase [Escherichia coli E1520]
 gi|323945815|gb|EGB41861.1| RNA methyltransferase [Escherichia coli H120]
 gi|324019829|gb|EGB89048.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           117-3]
 gi|332346450|gb|AEE59784.1| tRNA/rRNA methyltransferase LasT [Escherichia coli UMNK88]
          Length = 228

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                   ++ +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|167380896|ref|XP_001735498.1| nucleolar phosphoprotein [Entamoeba dispar SAW760]
 gi|165902498|gb|EDR28302.1| nucleolar phosphoprotein, putative [Entamoeba dispar SAW760]
          Length = 350

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 19/179 (10%)

Query: 116 LETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
           ++  P      D     + ++ +VL       NIGA+ R    +  + +           
Sbjct: 77  MKITPEKEKVQDERTFGDIKISVVLVRPMHEDNIGAVGRLCANYGINKLYIVNPLC-KIG 135

Query: 174 AVLAKSASGALEHIPYIRISNLTDALQK-------------MHSWGFQTIGLSSDSKKPL 220
               K +     +I    I N  + ++K                   + +    ++   L
Sbjct: 136 EESIKVSRHGNGYIEGAVICNSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDML 195

Query: 221 EQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YITQN 278
                   + L+ G E  GL  +  +    +  + +      LN+S+A  +AL Y+   
Sbjct: 196 ST--MKGCLGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIALNYMHMR 252


>gi|308187782|ref|YP_003931913.1| RNA methyltransferase [Pantoea vagans C9-1]
 gi|308058292|gb|ADO10464.1| putative RNA methyltransferase [Pantoea vagans C9-1]
          Length = 250

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL   +   N+G++ R+        +         +S  ++  A+GA + I     + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVKPDSQAIS-LAAGASDVIGDAKIVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKND----------KIALILGAEGKGLR 241
           L +A+          +G S+ S+    P+    +             +AL+ G E  GL 
Sbjct: 66  LDEAIAGCS----LVVGTSARSRSLPWPMLDARECGVKSVEEGQQAPVALVFGRERVGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A  +  Y  +
Sbjct: 122 NEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157


>gi|237729301|ref|ZP_04559782.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909030|gb|EEH94948.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 228

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           +L ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK-----------PLEQEIKN--DKIALILGAEG 237
               L DA   +H   F     +    K           PL QE     +  AL+ G E 
Sbjct: 62  --PTLADA---LHDVDFTIATTARSRAKFHYYATPVELVPLLQEKSTWMEHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|333010495|gb|EGK29928.1| hypothetical protein SFVA6_0291 [Shigella flexneri VA-6]
          Length = 261

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +S  +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSSDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|121604287|ref|YP_981616.1| tRNA/rRNA methyltransferase SpoU [Polaromonas naphthalenivorans
           CJ2]
 gi|120593256|gb|ABM36695.1| tRNA/rRNA methyltransferase (SpoU) [Polaromonas naphthalenivorans
           CJ2]
          Length = 311

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 28/160 (17%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPYIR-IS 193
           +L + +   N+GA  R+      D ++       +        + ASGAL+ +   R + 
Sbjct: 42  ILINTSHAGNVGATARAMKTMGFDDLVLVAPRWANVLRREETIQRASGALDVLNNARIVE 101

Query: 194 NLTDALQKM----------HSWGFQTIG---------------LSSDSKKPLEQEIKNDK 228
            L +AL  M            +G  T                 L  +   P+    + D 
Sbjct: 102 TLDEALDGMAHLCATAMTPRDFGPPTRAPRAHFAELLGRSEALLKQELGTPVHPAQRPDS 161

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           +A + G+E  G++ +          +       +LN+  A
Sbjct: 162 VAFLFGSERFGMQNEDVYRCHVALSIPTDPKFGSLNLGAA 201


>gi|304398597|ref|ZP_07380469.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
 gi|304353808|gb|EFM18183.1| RNA methyltransferase, TrmH family, group 1 [Pantoea sp. aB]
          Length = 250

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL   +   N+G++ R+        +         +S  ++  A+GA + I   + + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVKPDSQAIS-LAAGASDVIGEAKIVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKND----------KIALILGAEGKGLR 241
           L +A+          +G S+ S+    P+    +             +AL+ G E  GL 
Sbjct: 66  LDEAIAGCS----LVVGTSARSRSLPWPMLDARECGVKSVEEGQQAPVALVFGRERVGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A  +  Y  +
Sbjct: 122 NEELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157


>gi|126641510|ref|YP_001084494.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 244

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 27/125 (21%)

Query: 172 ESAVLAKSASGALEHIP-YIRISNLTDALQKMHSWGFQTIGLSSDSKKP----------- 219
               +   A+GA + +     +  L +A++  H       G S+ S+             
Sbjct: 18  PHPDIQALAAGAQDLLEQVEIVETLEEAIKDCH----LVFGTSARSRTIPWPLLDVRPAS 73

Query: 220 ---LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA----LNVSNAAAVA 272
              ++   +  +IA++ G E +GL  +    A     +     + +    LNV+ A  V 
Sbjct: 74  KEAIKAAAQGQQIAIVFGREDRGLTNEELALANYHLTIP----VNSDYGVLNVAQAIQVV 129

Query: 273 LYITQ 277
            Y  +
Sbjct: 130 CYELR 134


>gi|294012167|ref|YP_003545627.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292675497|dbj|BAI97015.1| tRNA/rRNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 350

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 12/158 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              ++VL       NIG   R+ + F    +          +     SA+GA   +    
Sbjct: 115 PPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGADVVLDKAE 174

Query: 192 I-SNLTDALQKM--------HSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           +   L DA+              G  + +    ++ + +       + A + G E  GL 
Sbjct: 175 VFGTLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHAA--TGRSAYVFGPERSGLE 232

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            +    A  +  + +     +LN++ A  +  Y     
Sbjct: 233 TEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQ 270


>gi|82779653|ref|YP_406002.1| putative RNA methyltransferase [Shigella dysenteriae Sd197]
 gi|309787372|ref|ZP_07681984.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
           dysenteriae 1617]
 gi|81243801|gb|ABB64511.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308924950|gb|EFP70445.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella
           dysenteriae 1617]
          Length = 228

 Score = 45.8 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                   ++ +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLVELLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|226939275|ref|YP_002794346.1| RNA methyltransferase [Laribacter hongkongensis HLHK9]
 gi|226714199|gb|ACO73337.1| Probable RNA methyltransferase [Laribacter hongkongensis HLHK9]
          Length = 268

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 31/180 (17%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
            P +   L  VR     +VL   + P NIG+  R+        +         +      
Sbjct: 13  KPEVPDFLRNVR-----VVLARPSLPANIGSAARAMKTMGLTRLYLVNPRRFPD-PEADT 66

Query: 179 SASGALEHIPYIRIS-NLTDALQKMHSWGFQTI-GLSSDSKKP--------------LEQ 222
            ASGA++ +    ++ +L +AL      G      L+S  ++               L+ 
Sbjct: 67  LASGAVDVLQQAVVTGSLGEALD-----GVALACALTSRKREITTPLAAPRIACAELLDA 121

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQNHF 280
             +  ++AL+ G E  GL  +       +  +   G     +LN++ A  V  Y   +  
Sbjct: 122 ARQGQQVALVFGNETFGLSIEEAGQCNRLVTI--AGNPDYFSLNLAQAVQVMSYELFSQL 179


>gi|82546754|ref|YP_410701.1| RNA methyltransferase [Shigella boydii Sb227]
 gi|187733363|ref|YP_001883067.1| putative RNA methyltransferase [Shigella boydii CDC 3083-94]
 gi|81248165|gb|ABB68873.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|187430355|gb|ACD09629.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii CDC
           3083-94]
 gi|320176856|gb|EFW51884.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           CDC 74-1112]
 gi|320183575|gb|EFW58420.1| RNA methyltransferase, TrmH family, group 1 [Shigella flexneri CDC
           796-83]
 gi|332090451|gb|EGI95549.1| hypothetical protein SB359474_4016 [Shigella boydii 3594-74]
          Length = 228

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                   ++ +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|87124813|ref|ZP_01080661.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
 gi|86167692|gb|EAQ68951.1| probable tRNA/rRNA methyltransferase [Synechococcus sp. RS9917]
          Length = 254

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 60/175 (34%), Gaps = 21/175 (12%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           ++A    +L +VL     P N+G++ R    ++   +               + A     
Sbjct: 4   VNAPGAPRLCVVLVEPAGPINLGSVARLCANYAITDLRLVAPRCNPADPEARRMAVHGQA 63

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSS---DSKKPLE--QEIKNDKIA---------- 230
            +     ++  D +  +H    + +           PL   +++    +A          
Sbjct: 64  VLD--SATHYPDLISALHGCR-RVVATCGRLDHGTIPLHPPEQVLPWLLADHGAAEASQA 120

Query: 231 ---LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              L+ G E +GL       +  +  L+      +LN+S+A AV L+  +    +
Sbjct: 121 AAALVFGREDRGLSNDELLLSQRVIALYSDPHYPSLNLSHAVAVVLHELERCRRQ 175


>gi|229522766|ref|ZP_04412181.1| rRNA methylase [Vibrio cholerae TM 11079-80]
 gi|229340213|gb|EEO05220.1| rRNA methylase [Vibrio cholerae TM 11079-80]
          Length = 170

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 12/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S +++ L +   P N+GA++R+A  ++   +          +         + E I  ++
Sbjct: 5   STVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-RAVKFQTDTQNSHERIGLVQ 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + +LT  L        + + +        L      ++   + G E   L  +  + A  
Sbjct: 64  MDDLTAGLDSE----VKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVDQAHH 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 120 VVYVPTHGCM---NLAATVNVVLY---DRLAK 145


>gi|193065649|ref|ZP_03046715.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194429193|ref|ZP_03061722.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|209921870|ref|YP_002295954.1| putative RNA methyltransferase [Escherichia coli SE11]
 gi|218698239|ref|YP_002405906.1| putative RNA methyltransferase [Escherichia coli 55989]
 gi|256020154|ref|ZP_05434019.1| putative RNA methyltransferase [Shigella sp. D9]
 gi|260847293|ref|YP_003225071.1| putative rRNA methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|293476666|ref|ZP_06665074.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|192926722|gb|EDV81350.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli E22]
 gi|194412808|gb|EDX29101.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B171]
 gi|209915129|dbj|BAG80203.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218354971|emb|CAV02220.1| rRNA methyltransferase [Escherichia coli 55989]
 gi|257762440|dbj|BAI33937.1| predicted rRNA methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|291321119|gb|EFE60561.1| tRNA/rRNA methyltransferase [Escherichia coli B088]
 gi|323163224|gb|EFZ49056.1| hypothetical protein ECE128010_0585 [Escherichia coli E128010]
 gi|323181944|gb|EFZ67356.1| hypothetical protein ECOK1357_4815 [Escherichia coli 1357]
 gi|324118355|gb|EGC12249.1| RNA methyltransferase [Escherichia coli E1167]
          Length = 228

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                   ++ +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLVESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|227509370|ref|ZP_03939419.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227512233|ref|ZP_03942282.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227524036|ref|ZP_03954085.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227084627|gb|EEI19939.1| SpoU family RNA methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227088775|gb|EEI24087.1| SpoU family RNA methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227191082|gb|EEI71149.1| SpoU family RNA methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 175

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 10/143 (6%)

Query: 144 PHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           P N G I R+      D I+          ++  L ++       +      NL + L+ 
Sbjct: 18  PANTGNIARTCA--GTDTILDLIEPLGFKLDNKHLKRAGLDYWNKVQINYHQNLPEFLKT 75

Query: 202 MHS-WGFQTIG--LSSDSKKPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMP 257
           + +      +    + D   P   + K D   L+ G E  GL  P  ++       +   
Sbjct: 76  VENPKNLFLVSKFANQDYTDPDYSDPKQDYY-LLFGKETTGLPEPFMRKNPEKAIRIPQD 134

Query: 258 G-IIKALNVSNAAAVALYITQNH 279
              I+ALN+SN+ A+ +Y     
Sbjct: 135 DDHIRALNLSNSCAIVIYEVLRQ 157


>gi|27363908|ref|NP_759436.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
 gi|320157287|ref|YP_004189666.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|27360025|gb|AAO08963.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus CMCP6]
 gi|319932599|gb|ADV87463.1| tRNA:Cm32/Um32 methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 242

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++  +     ++  +A ++  A   +  + +++L
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEVDAQAIALASGAADIALNALVVNSL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-------PLE------QEIKNDKIALILGAEGKGLRP 242
            +A+          +G S+ S+        P E      QE +   +AL+ G E  GL  
Sbjct: 67  EEAVADCA----LVVGSSARSRTLEWPMLEPFECAEKFVQEGQTSHVALVFGRERTGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
              +       +       +LN++ A
Sbjct: 123 DELQRCHYHVCIPANPEYSSLNLAMA 148


>gi|37678937|ref|NP_933546.1| rRNA methylase [Vibrio vulnificus YJ016]
 gi|37197679|dbj|BAC93517.1| rRNA methylase [Vibrio vulnificus YJ016]
          Length = 242

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++  +     ++  +A ++  A   +  + +++L
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQLVLVQPECEVDAQAIALASGAADIALNALVVNSL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-------PLE------QEIKNDKIALILGAEGKGLRP 242
            +A+          +G S+ S+        P E      QE +   +AL+ G E  GL  
Sbjct: 67  EEAVADCA----LVVGSSARSRTLEWPMLEPFECAEKFVQEGQTSHVALVFGRERTGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
              +       +       +LN++ A
Sbjct: 123 DELQRCHYHVCIPANPEYSSLNLAMA 148


>gi|330503997|ref|YP_004380866.1| RNA methyltransferase [Pseudomonas mendocina NK-01]
 gi|328918283|gb|AEB59114.1| RNA methyltransferase, putative [Pseudomonas mendocina NK-01]
          Length = 223

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 13/141 (9%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+I+R+A  +    +  T          +  +     + IP I I +L   L    
Sbjct: 84  PENVGSIMRAAGCYGVSSVFYTGTRYDRAKDFITDT-KKVHQDIPLINIDDLRKILP--- 139

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQE-TATSMAHLHMPGIIK 261
             G   + +   D  + L      D+   I G E   L+ +  +  A  + ++   G + 
Sbjct: 140 -LGCTPVAVELVDDARALPAYTHPDRALYIFGPEDGSLQQEILDWCAGEVVYIPTQGCM- 197

Query: 262 ALNVSNAAAVALYITQNHFAK 282
             N++    V LY   +  AK
Sbjct: 198 --NLAATVNVVLY---DRLAK 213


>gi|299067213|emb|CBJ38410.1| Putative tRNA/rRNA methyltransferase [Ralstonia solanacearum CMR15]
          Length = 259

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 21/160 (13%)

Query: 137 VLDHVNDPHNIGAILRS--AVAFSCDG--IITTKRYSPSES-AVLAKSASGALEHIPYIR 191
           +L   + P N+G+  R+   + F   G  ++   R   ++S       ASGA + +   R
Sbjct: 1   MLVETSHPGNVGSTARALKTMGFGESGSYVLVRPREPDAQSHPDAVAMASGADDVLADAR 60

Query: 192 ISNLTDALQKMHSWGFQTIGLS-----------SDSKKPLEQEIKNDK---IALILGAEG 237
           + +  D  + +          +             +       +       +A + G E 
Sbjct: 61  VVD--DFGEALAGASLVIALTARPREFGPRRIGPRAAAQEVAALLAAPGATVAFVFGNER 118

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +  E    + H+       +LN+S A  +  Y  +
Sbjct: 119 YGLPNEVVERCHVVTHIPANPAYASLNLSQAVQLIAYEVR 158


>gi|284161302|ref|YP_003399925.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
           profundus DSM 5631]
 gi|284011299|gb|ADB57252.1| RNA methyltransferase, TrmH family, group 1 [Archaeoglobus
           profundus DSM 5631]
          Length = 234

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 59/168 (35%), Gaps = 44/168 (26%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE----HIPYIR 191
           + L  +  P N+G + R    F  + +     Y+   + V  K+AS A +     +   +
Sbjct: 4   VYLVGLKIPENVGFVARVMKNFGFEKLYL---YNCKVTTVSFKTASHARDILRNAVVLRK 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI----------------KNDKIALILGA 235
             ++ D +  +       +G +  +    E+ I                K  +IA+  G 
Sbjct: 61  FDDILDHVNML-------VGTTGVTAYSYERYIRKPIFTPEEFRNFLEGKKGEIAVAFGR 113

Query: 236 EGKGLRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
           E  GL  +  E    +  +        M       NVS+A AV LY  
Sbjct: 114 EDYGLFNEELELCHMLVSVPTNPEYPVM-------NVSHAVAVILYEL 154


>gi|311278537|ref|YP_003940768.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
 gi|308747732|gb|ADO47484.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
          Length = 242

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G++ R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGAS----DVIGNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-PLEQEIKND------------KIALILGAEGKGLRP 242
            D L    +     +G S+ S+  P       +             +AL+ G E  GL  
Sbjct: 63  VDTLDDALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAEHAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  V  Y  +
Sbjct: 123 DELQKCNYHVAIAANPEYSSLNLAMAVQVIAYEVR 157


>gi|188576184|ref|YP_001913113.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520636|gb|ACD58581.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 228

 Score = 45.8 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%)

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVA 272
              +++ L +  +  ++A + G E  GL     +   +  H+       +LN++ A  V 
Sbjct: 70  DEGAQRALAKASEPAEVAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVL 129

Query: 273 LYITQ 277
            Y  +
Sbjct: 130 AYEVR 134


>gi|254453515|ref|ZP_05066952.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
 gi|198267921|gb|EDY92191.1| tRNA/rRNA methyltransferase [Octadecabacter antarcticus 238]
          Length = 245

 Score = 45.8 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 59/161 (36%), Gaps = 17/161 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            Q  +VL       N+GA  R+   F  D +          +      ASGA   +    
Sbjct: 6   PQPTIVLIRPQMGENVGAAARAMWNFGLDRMRIVAPRDGWPNPAAVAMASGAGRILDEAE 65

Query: 192 I-SNLTDALQKMHSWGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKG 239
           + +++ D +    ++ + T     +  KP+            +  + +K+A++ G E  G
Sbjct: 66  VSTDVADGIAD-RTYVYATTARPRELTKPVFSPEAAMKDAAARIARGEKVAVMFGPERSG 124

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           +       A ++  + +     +LN++    V L  Y  + 
Sbjct: 125 MENADIAHANAIITVPVNPEFPSLNLAQC--VLLVGYEWRR 163


>gi|110808190|ref|YP_691710.1| putative RNA methyltransferase [Shigella flexneri 5 str. 8401]
 gi|110617738|gb|ABF06405.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 228

 Score = 45.8 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                   ++ +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|45357897|ref|NP_987454.1| TrmH family RNA methyltransferase [Methanococcus maripaludis S2]
 gi|45047457|emb|CAF29890.1| rRNA methyltransferase related protein [Methanococcus maripaludis
           S2]
          Length = 234

 Score = 45.8 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 55/157 (35%), Gaps = 22/157 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L +     N+GAI R+ + F  + +                 A  A   +   +  +
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIVG-TPEILDDEAYIRAVHAKNILNNAKFYS 62

Query: 195 -LTDALQKMHSWGFQTIGL-SSDSKKPLEQEIKNDK------------IALILGAEGKGL 240
            L DA+  +    F      +    + + +     +            + ++ G E  GL
Sbjct: 63  KLEDAISDI---DFTVATTGAVCGDRNVNRVPITPRELAKKHSSISGTLGIVFGREDDGL 119

Query: 241 RPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYI 275
           + +  E    +  +       I  LN+S+A +V LY 
Sbjct: 120 KNEDVELCDILVSVPTSNKYPI--LNLSHAVSVILYE 154


>gi|121635055|ref|YP_975300.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
 gi|161870219|ref|YP_001599389.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
 gi|218768365|ref|YP_002342877.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
 gi|120866761|emb|CAM10514.1| SpoU methylase family protein [Neisseria meningitidis FAM18]
 gi|121052373|emb|CAM08705.1| SpoU methylase family protein [Neisseria meningitidis Z2491]
 gi|161595772|gb|ABX73432.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 053442]
          Length = 292

 Score = 45.8 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   LD +R     ++L   + P NIG+  R+        +                
Sbjct: 26  KPALPAYLDNIR-----IILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENP 80

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDS-- 216
                E     K        ASGA + +    I+ +L +AL         TI  +  S  
Sbjct: 81  PVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 134

Query: 217 --------------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+AL+ G E  GL  +  +    +  +   G    
Sbjct: 135 REITAPLQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDY 192

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 193 FSLNLAQAVQVVCYEIFSQ 211


>gi|254805142|ref|YP_003083363.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
 gi|254668684|emb|CBA06409.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
          Length = 272

 Score = 45.8 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 66/199 (33%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   L  +R     +VL   + P NIG+  R+        +                
Sbjct: 5   KPELPDYLGNIR-----IVLTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENP 59

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSK- 217
                E     KS       ASGA + +    I+ +L +AL         TI  +  S+ 
Sbjct: 60  PVFDPEYPQSFKSPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 113

Query: 218 ---------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+AL+ G E  GL  +  +    +  +   G    
Sbjct: 114 REITAPLQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDY 171

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 172 FSLNLAQAVQVVCYEIFSQ 190


>gi|229525984|ref|ZP_04415388.1| rRNA methylase [Vibrio cholerae bv. albensis VL426]
 gi|229336142|gb|EEO01160.1| rRNA methylase [Vibrio cholerae bv. albensis VL426]
          Length = 170

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S +++ L +   P N+GA++R+A  ++   +          +         + E I  + 
Sbjct: 5   STVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-RAVKFQTDTQNSHERIGLVE 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + +LT  L        + + +        L      ++   + G E   L  +  + A  
Sbjct: 64  MDDLTAGLDSE----VKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVDQAHH 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 120 VVYVPTHGCM---NLAATVNVVLY---DRLAK 145


>gi|15790377|ref|NP_280201.1| hypothetical protein VNG1347C [Halobacterium sp. NRC-1]
 gi|10580859|gb|AAG19681.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 253

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 34/156 (21%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-----IPYIRISNLTDAL 199
            N+G I R+   F  + ++                A G   H     +P  R  +    +
Sbjct: 27  GNVGTIARAMKNFGFEELLL----VDPPYLGRDSEAYGFAGHAREDILPEARELSFDALV 82

Query: 200 QKMHSWGFQTIG---LSSDSKKPLEQE--------IKNDKIALILGAEGKGLRPKTQETA 248
            + H+ GF  I     +S ++ P                  AL+ G E  GL        
Sbjct: 83  SEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPTALVFGRERVGLTNDELARI 142

Query: 249 TSMAHLH-------MPGIIKALNVSNAAAVALYITQ 277
             +  +        M       N+  +A VALY  +
Sbjct: 143 DEVGSIPASDDYPVM-------NLGQSATVALYELR 171


>gi|332298868|ref|YP_004440790.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
 gi|332181971|gb|AEE17659.1| tRNA/rRNA methyltransferase (SpoU) [Treponema brennaborense DSM
           12168]
          Length = 251

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 38/170 (22%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDG---IITTKRYSPSESAVLAKSASGALEHIP 188
           S++ +VL H  +  N+GA+ R+           +   + Y      +LA  A+G  E   
Sbjct: 4   SRICIVLAHPEESRNVGAVCRAMANSGMKKLRIVGKKQDYDDERVRILAIHAAGIWERAE 63

Query: 189 YIRISNLTDALQKMHSWGFQTIGLS---SDSKKPLEQEIKNDKIALI------------- 232
           +       + + +           +     +     +  K   + L+             
Sbjct: 64  FF------ETITQ---------ATADCPLSAGTTRRKGKKRKNMLLLPEEFARQAAAVPG 108

Query: 233 ----LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
                G E  GL  +     T    +       +LN+S+A  +  Y    
Sbjct: 109 AAVVFGNERTGLTDEELAECTVGVTIPSHESFASLNLSHAVQIICYTLFR 158


>gi|261345350|ref|ZP_05972994.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rustigianii DSM 4541]
 gi|282566393|gb|EFB71928.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Providencia
           rustigianii DSM 4541]
          Length = 243

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL   +   N+G+  R+        +         +S  +A  ++GA + I     +++
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLSNLYLVNPLVEPDSHAIA-LSAGASDVIGNAKIVTS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
           L +AL+         IG S+ S+                 Q+     +A+I G E  GL 
Sbjct: 66  LDEALEGCK----LVIGTSARSRTLPWPMVEPRECGVKSVQQSNESPVAIIFGRERVGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +      ++       +LN++ A
Sbjct: 122 NEELQKCNYHLYIPTNPEYGSLNLAMA 148


>gi|83952097|ref|ZP_00960829.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
           nubinhibens ISM]
 gi|83837103|gb|EAP76400.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius
           nubinhibens ISM]
          Length = 231

 Score = 45.4 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 15/147 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA  R+   F  D +          +      ASGA   +   ++    DA     S+
Sbjct: 4   NIGAAARAMWNFGLDRMRLVSPRDGWPNPKAVAMASGAGRLLDEAQLVEDVDAAVADTSF 63

Query: 206 GFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            F T   S +  KP+            +    +++A++ G E  GL       A ++ ++
Sbjct: 64  VFATTARSREMTKPVYTPEAAMKLAAEKIAGGERVAVLFGPERAGLENDDVARANAIINV 123

Query: 255 HMPGIIKALNVSNAAAVAL--YITQNH 279
            +     +LN++    V L  Y     
Sbjct: 124 PVNPQFASLNLAQC--VLLVGYEWMRQ 148


>gi|153803685|ref|ZP_01958271.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-3]
 gi|124120781|gb|EAY39524.1| rRNA methylase, SpoU family [Vibrio cholerae MZO-3]
          Length = 127

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 2/103 (1%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM-HS 204
           N G I+R       +  +        E   + ++     +     R  +    ++ +   
Sbjct: 14  NTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRHKDYAAFIEYLQRE 73

Query: 205 WG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
            G F+    ++ + +            L+ G E +GL  +   
Sbjct: 74  RGSFRVFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIA 116


>gi|261823098|ref|YP_003261204.1| RNA methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261607111|gb|ACX89597.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           wasabiae WPP163]
          Length = 228

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHS 204
           N+GA  R+        +      +  +       A G+ + +  +++ S L DAL  +  
Sbjct: 15  NVGAAARAMKTMGFSSLRIVGSTA-HQEPAARWVAHGSGDILDNVQVFSTLADALADV-- 71

Query: 205 WGFQTIGLSSDSKKPLEQ-------EIKNDKI------ALILGAEGKGLRPKTQETATSM 251
             F     +    K           ++  +KI      AL+ G E  GL  +  E A  +
Sbjct: 72  -DFTVATTARSRAKFRYYCTPAELTDLLQEKIQWMASAALVFGREDTGLTNEELELADVL 130

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M     +LN+  A  V  Y   
Sbjct: 131 TGVPMKADYPSLNLGQAVMVFCYQLA 156


>gi|229513183|ref|ZP_04402648.1| rRNA methylase [Vibrio cholerae TMA 21]
 gi|229349593|gb|EEO14548.1| rRNA methylase [Vibrio cholerae TMA 21]
          Length = 170

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S +++ L +   P N+GA++R+A  ++   +          +         + E I  + 
Sbjct: 5   STVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-RAVKFQTDTQNSHERIGLVE 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + +LT  L        + + +        L      ++   + G E   L  +  + A  
Sbjct: 64  MDDLTAGLDSE----VKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVDQAHH 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 120 VVYVPTHGCM---NLAATVNVVLY---DRLAK 145


>gi|121585625|ref|ZP_01675421.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80]
 gi|121725811|ref|ZP_01679111.1| rRNA methylase, putative [Vibrio cholerae V52]
 gi|147671714|ref|YP_001215406.1| putative rRNA methylase [Vibrio cholerae O395]
 gi|153211863|ref|ZP_01947710.1| rRNA methylase, putative [Vibrio cholerae 1587]
 gi|153824394|ref|ZP_01977061.1| rRNA methylase, putative [Vibrio cholerae MZO-2]
 gi|153830522|ref|ZP_01983189.1| putative rRNA methylase [Vibrio cholerae 623-39]
 gi|229528543|ref|ZP_04417934.1| rRNA methylase [Vibrio cholerae 12129(1)]
 gi|254285652|ref|ZP_04960615.1| rRNA methylase, putative [Vibrio cholerae AM-19226]
 gi|262168476|ref|ZP_06036172.1| rRNA methylase [Vibrio cholerae RC27]
 gi|121550242|gb|EAX60256.1| 23S rRNA methyltransferase [Vibrio cholerae 2740-80]
 gi|121631576|gb|EAX63944.1| rRNA methylase, putative [Vibrio cholerae V52]
 gi|124116939|gb|EAY35759.1| rRNA methylase, putative [Vibrio cholerae 1587]
 gi|146314097|gb|ABQ18637.1| putative rRNA methylase [Vibrio cholerae O395]
 gi|148873981|gb|EDL72116.1| putative rRNA methylase [Vibrio cholerae 623-39]
 gi|149741948|gb|EDM55977.1| rRNA methylase, putative [Vibrio cholerae MZO-2]
 gi|150424149|gb|EDN16087.1| rRNA methylase, putative [Vibrio cholerae AM-19226]
 gi|227015313|gb|ACP11522.1| putative rRNA methylase [Vibrio cholerae O395]
 gi|229334905|gb|EEO00391.1| rRNA methylase [Vibrio cholerae 12129(1)]
 gi|262023005|gb|EEY41710.1| rRNA methylase [Vibrio cholerae RC27]
 gi|327485645|gb|AEA80051.1| RRNA methylase, putative [Vibrio cholerae LMA3894-4]
          Length = 170

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S +++ L +   P N+GA++R+A  ++   +          +         + E I  + 
Sbjct: 5   STVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-RAVKFQTDTQNSHERIGLVE 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + +LT  L        + + +        L      ++   + G E   L  +  + A  
Sbjct: 64  MDDLTAGLDSE----VKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVDQAHH 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 120 VVYVPTHGCM---NLAATVNVVLY---DRLAK 145


>gi|225076736|ref|ZP_03719935.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
           NRL30031/H210]
 gi|224951934|gb|EEG33143.1| hypothetical protein NEIFLAOT_01787 [Neisseria flavescens
           NRL30031/H210]
          Length = 304

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 45/196 (22%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS------- 171
            P L   LD +R     ++L   + P NIG+  R   A    G+      +P+       
Sbjct: 38  KPALPAYLDNIR-----IILTRTSHPANIGSAAR---AMKTMGLHKLTIVAPNLMATPMT 89

Query: 172 ESAVLAKSASGALEHIP---YIRISNLTDALQKM-------HSWGFQTIGLSSDSK---- 217
           E+  +          +P   +I  S   D L+          +    TI  +  S+    
Sbjct: 90  ENPPVFNPDDVQSFALPEESFILASGAADVLENATIAASLDKALADTTIACALTSRRREI 149

Query: 218 ------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK--AL 263
                       + L+   + +K+AL+ G E  GL  +  +    +  +   G     +L
Sbjct: 150 TAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDYFSL 207

Query: 264 NVSNAAAVALYITQNH 279
           N++ A  V  Y   + 
Sbjct: 208 NLAQAVQVVCYEIFSQ 223


>gi|300816031|ref|ZP_07096254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
 gi|300531238|gb|EFK52300.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           107-1]
          Length = 228

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 22/147 (14%)

Query: 146 NIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           NIGA  R+          I+ ++ +    +  +A  +   +++I           ++ +H
Sbjct: 15  NIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF-----PTLVESLH 69

Query: 204 SWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKGLRPKTQETATS 250
              F     +    K            +  +K       AL+ G E  GL  +    A  
Sbjct: 70  DVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADV 129

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + M     +LN+  A  V +Y  Q
Sbjct: 130 LTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|15677213|ref|NP_274366.1| putative RNA methylase [Neisseria meningitidis MC58]
 gi|7226592|gb|AAF41722.1| putative RNA methylase [Neisseria meningitidis MC58]
 gi|261392376|emb|CAX49916.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis 8013]
 gi|308389465|gb|ADO31785.1| putative RNA methylase; SpoU family [Neisseria meningitidis
           alpha710]
 gi|316984154|gb|EFV63132.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Neisseria meningitidis H44/76]
 gi|319410611|emb|CBY90980.1| putative tRNA/rRNA methyltransferase [Neisseria meningitidis WUE
           2594]
 gi|325128461|gb|EGC51342.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           N1568]
 gi|325130415|gb|EGC53179.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           OX99.30304]
 gi|325132458|gb|EGC55151.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M6190]
 gi|325134417|gb|EGC57062.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M13399]
 gi|325136150|gb|EGC58758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M0579]
 gi|325138232|gb|EGC60801.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           ES14902]
 gi|325140433|gb|EGC62954.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           CU385]
 gi|325142543|gb|EGC64943.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           961-5945]
 gi|325144517|gb|EGC66816.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240013]
 gi|325198493|gb|ADY93949.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           G2136]
 gi|325200032|gb|ADY95487.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           H44/76]
 gi|325201943|gb|ADY97397.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240149]
 gi|325205885|gb|ADZ01338.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M04-240196]
 gi|325208306|gb|ADZ03758.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           NZ-05/33]
          Length = 271

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   LD +R     ++L   + P NIG+  R+        +                
Sbjct: 5   KPALPAYLDNIR-----IILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENP 59

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDS-- 216
                E     K        ASGA + +    I+ +L +AL         TI  +  S  
Sbjct: 60  PVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 113

Query: 217 --------------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+AL+ G E  GL  +  +    +  +   G    
Sbjct: 114 REITAPLQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDY 171

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 172 FSLNLAQAVQVVCYEIFSQ 190


>gi|87121814|ref|ZP_01077700.1| putative rRNA methylase [Marinomonas sp. MED121]
 gi|86162843|gb|EAQ64122.1| putative rRNA methylase [Marinomonas sp. MED121]
          Length = 247

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 29/159 (18%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL +   P N+GAI R+        +      +   S      A+GA   +  +  + +
Sbjct: 7   IVLINTFHPGNVGAIARAMKNMGLSNLYLVDP-NDYPSEEATSRAAGA---VDLLENATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKK---PLEQ----------EIKNDKIALILGAEGKGLRP 242
            +  ++  +     +G S+  +    P+            E  N  IA++ G E  GL  
Sbjct: 63  VETFEEAIADCSLVVGTSARHRTFQLPIMNARECAESAVIEATNQPIAIVFGREKTGLLN 122

Query: 243 KTQETATSMAHL------HMPGIIKALNVSNAAAVALYI 275
                     ++       +      LN+S A  +  Y 
Sbjct: 123 DEIAQCHRQVYIDANDEYPV------LNISQAVQIVAYE 155


>gi|330968088|gb|EGH68348.1| hypothetical protein PSYAC_26292 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 166

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T +     +           + IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGKRY-ERARDFITDTKKIHQDIPLIGIEDLKS 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         D  + L +    D+   I G E   L  + ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVDGARALPEYTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYIT 276
            G +   N++    V LY  
Sbjct: 126 EGCM---NLAATVNVVLYDR 142


>gi|157147586|ref|YP_001454905.1| putative RNA methyltransferase [Citrobacter koseri ATCC BAA-895]
 gi|157084791|gb|ABV14469.1| hypothetical protein CKO_03386 [Citrobacter koseri ATCC BAA-895]
          Length = 228

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 27/157 (17%)

Query: 146 NIGAILRSA--VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           NIGA  R+   + F    I+ ++ +    +  +A  ++  +++I       L +A   +H
Sbjct: 15  NIGAAARAMKTMGFGDMRIVDSQAHLEPATRWVAHGSADIIDNISVY--PTLAEA---LH 69

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEGKGLRPKTQETATS 250
              F     +    K        +   +           AL+ G E  GL  +    A  
Sbjct: 70  DVDFTVATTARSRAKFHYYATPAELLPLLQEKSQWMNHAALVFGREDSGLTNEELALADV 129

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ-----NHFAK 282
           +  + M     +LN+  A  V +Y  Q        AK
Sbjct: 130 LTGVPMVADYPSLNLGQA--VMVYCYQLAGLMQQLAK 164


>gi|66044814|ref|YP_234655.1| hypothetical protein Psyr_1569 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255521|gb|AAY36617.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|330900092|gb|EGH31511.1| hypothetical protein PSYJA_22049 [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330974095|gb|EGH74161.1| hypothetical protein PSYAR_26774 [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330982587|gb|EGH80690.1| hypothetical protein PSYAP_29228 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 166

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T +     +           + IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGKRY-ERARDFITDTKKIHQDIPLIGIEDLKS 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         D  + L +    D+   I G E   L  + ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVDGARALPEYTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYIT 276
            G +   N++    V LY  
Sbjct: 126 EGCM---NLAATVNVVLYDR 142


>gi|84516146|ref|ZP_01003506.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
           vestfoldensis SKA53]
 gi|84509842|gb|EAQ06299.1| RNA methyltransferase, TrmH family, group 1 [Loktanella
           vestfoldensis SKA53]
          Length = 246

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 15/146 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKM-- 202
           NIGA  R    F  D +          +      ASGA   +   +   +   A+     
Sbjct: 20  NIGAAARGMWNFGLDRMRVIAPRDGWPNQRAVAMASGAGRLLDEAQLFEDTAAAIADCDF 79

Query: 203 ------HSWGFQTIGLSSDSK--KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                    G     LS ++       +     K+A++ G E  G+       A ++  +
Sbjct: 80  VYATTARPRGLTKPVLSPEAAMQDAYARIAAGGKVAVMFGPERAGMENDDIARANAIISV 139

Query: 255 HMPGIIKALNVSNAAAVAL--YITQN 278
            +     +LN++    V L  Y  + 
Sbjct: 140 PVNPDFPSLNLAQC--VLLLGYEWRR 163


>gi|331701050|ref|YP_004398009.1| tRNA/rRNA methyltransferase SpoU [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128393|gb|AEB72946.1| tRNA/rRNA methyltransferase (SpoU) [Lactobacillus buchneri NRRL
           B-30929]
          Length = 170

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 12/144 (8%)

Query: 144 PHNIGAILRSAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           P N G I R+      D ++          +   L ++     + +      NL + L+ 
Sbjct: 13  PANTGNIARTCA--GTDTVLDLIEPLGFSIDDKHLKRAGLDYWDKVQINYHQNLPEFLKS 70

Query: 202 MHS-WGFQTIGLSSDSKKPLEQEIKNDK---IALILGAEGKGLR-PKTQETATSMAHLHM 256
           + +      +  S  + +       +D      L+ G E  GL  P  ++       +  
Sbjct: 71  VKNPQNLFLV--SKFANQDYTDPDYSDPSQDYYLLFGKETTGLPEPFMRQNPEKAIRIPQ 128

Query: 257 PG-IIKALNVSNAAAVALYITQNH 279
               I+ALN+SN  A+ +Y     
Sbjct: 129 DDDNIRALNLSNTCAIVIYEVLRQ 152


>gi|293394858|ref|ZP_06639148.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera DSM 4582]
 gi|291422609|gb|EFE95848.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Serratia
           odorifera DSM 4582]
          Length = 241

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A +A  +      I  + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALAAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            D   +  +     +G S+ S+                 QE +   +AL+ G E  GL  
Sbjct: 63  VDTFDEAIAGCSLVVGTSARSRTLPWPMLEPRECGVRAVQEGEQAPVALVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 123 DELQKCHYHVAIPANPDYSSLNLAMAVQILAYDVR 157


>gi|170683598|ref|YP_001746860.1| putative RNA methyltransferase [Escherichia coli SMS-3-5]
 gi|170521316|gb|ACB19494.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           SMS-3-5]
          Length = 228

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +S  +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSSDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|146310227|ref|YP_001175301.1| putative RNA methyltransferase [Enterobacter sp. 638]
 gi|145317103|gb|ABP59250.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter sp. 638]
          Length = 228

 Score = 45.4 bits (107), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 146 NIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           NIGA  R+      +   I+ ++ +    +  +A  +   ++       + L DA   +H
Sbjct: 15  NIGAAARAMKTMGFNDLRIVASEAHLEPATRWVAHGSGEIID--NISTYATLADA---LH 69

Query: 204 SWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRPKTQETATS 250
              F     +    K        +             K AL+ G E  GL  +  E A  
Sbjct: 70  DISFTVATTARSRAKFHYYATPAELVPMLTEKSEWISKAALVFGREDSGLTNEELELADV 129

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + M     +LN+  A  V +Y  Q
Sbjct: 130 LTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|254670560|emb|CBA06425.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           alpha153]
          Length = 271

 Score = 45.4 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   LD +R     ++L   + P NIG+  R+        +                
Sbjct: 5   KPALPAYLDNIR-----IILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENP 59

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSK- 217
                E     K        ASGA + +    I+ +L +AL         TI  +  S+ 
Sbjct: 60  PVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 113

Query: 218 ---------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+AL+ G E  GL  +  +    +  +   G    
Sbjct: 114 REITAPLQTPRDLVSELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDY 171

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 172 FSLNLAQAVQVVCYEIFSQ 190


>gi|330828511|ref|YP_004391463.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328803647|gb|AEB48846.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565]
          Length = 150

 Score = 45.4 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 14/155 (9%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
           +++   + L +   P N+G+++R+A  +  D +  T       +   A      +E IP 
Sbjct: 3   KSAFCCVGLVNPKSPENVGSVMRAAGCYGVDEVYYTGNR-FELARRFATDTKQMVEKIPL 61

Query: 190 IRISNLTDALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKG-LRPKTQET 247
           + + +L   +      G    +    D   PL   +  ++   I G E  G L P     
Sbjct: 62  LGVDDLMAFIP----QGCVPVVVDLIDGATPLPDYVHPERAFYIFGPE-DGTLDPALYGA 116

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              + ++   G +   N++ +  V LY   +  AK
Sbjct: 117 VKDVVYVPTQGCM---NLAASVNVILY---DRLAK 145


>gi|150403255|ref|YP_001330549.1| RNA methyltransferase [Methanococcus maripaludis C7]
 gi|150034285|gb|ABR66398.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           maripaludis C7]
          Length = 234

 Score = 45.4 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 22/157 (14%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L +     N+GAI R+ + F  + +         +     +    A+     +  + 
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFDVEELRIVGNSEILDEEAYIR----AVHAKNILNNTK 59

Query: 195 LTDALQ-KMHSWGFQTIGLSS------DSKKPLE-------QEIKNDKIALILGAEGKGL 240
               L+  +    F      +       ++ P+            N  + ++ G E  GL
Sbjct: 60  FYSTLEDAIFDIDFTVATTGAVCGDRNVNRVPITPRELAKKHVELNGSLGIVFGREDDGL 119

Query: 241 RPKTQETATSMAHLHMPGI--IKALNVSNAAAVALYI 275
           + +  E    +  +       I  +N+S+A +V LY 
Sbjct: 120 KNEDVELCDILVSVPTSNKYPI--MNLSHAVSVLLYE 154


>gi|333022343|gb|EGK41581.1| hypothetical protein SFK304_0112 [Shigella flexneri K-304]
          Length = 261

 Score = 45.4 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|288959273|ref|YP_003449614.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
 gi|288911581|dbj|BAI73070.1| tRNA/rRNA methyltransferase [Azospirillum sp. B510]
          Length = 258

 Score = 45.4 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 22/165 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           PT D++      ++L       NIGA  R+ +      +   K      +     +ASGA
Sbjct: 7   PTRDSILGGP-AVILVQPQLGENIGACARAMLNCGLTDLRLVKPRDGWPNPKANAAASGA 65

Query: 184 LEHIPYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPL--------------EQEIKNDK 228
              I   RI     +A+  + +        +  ++  +              E+     K
Sbjct: 66  DPVIENARIFETTAEAVADLEA----VFATTVRTRDMIQRFVTPRVAAGEMRERYAAGQK 121

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           + ++ G E  GL       A ++  + +     +LN++ A  V L
Sbjct: 122 LGVMFGPERTGLVNDDLTLAQTLVTVPLNPAFSSLNLAQA--VLL 164


>gi|255075243|ref|XP_002501296.1| predicted protein [Micromonas sp. RCC299]
 gi|226516560|gb|ACO62554.1| predicted protein [Micromonas sp. RCC299]
          Length = 467

 Score = 45.4 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 49/204 (24%), Gaps = 57/204 (27%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCD------------------------GI 162
           DA     +  VL     P NIG I R    F                            I
Sbjct: 71  DATPLDNVCFVLCRPQGPQNIGGIARVMQNFGVTDLRIVAPEPGALAPPFDAADEYDRAI 130

Query: 163 ITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
              +  +    S    K A  A   +   R     D  + +    F     ++  ++ L 
Sbjct: 131 HPPEVRARAPLSDEAHKFAVHADWLLRDARRCATAD--EALADVAF-VAATTARPRENLS 187

Query: 222 QEI-------------KNDKIALILGAEGKGLRPKTQETATSMAHL-------------- 254
                              K+A++ G E  GL       A     +              
Sbjct: 188 IADVRAASEVLRRHAANGTKVAVVFGNEATGLTNDELARANLGVMIATSAATSSPASSRK 247

Query: 255 --HMPGIIKALNVSNAAAVALYIT 276
                    +LN+S A  V  Y  
Sbjct: 248 RYTGAKGATSLNLSMAVGVVAYEL 271


>gi|289826152|ref|ZP_06545264.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 234

 Score = 45.4 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++++VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVIIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|153802741|ref|ZP_01957327.1| rRNA methylase, putative [Vibrio cholerae MZO-3]
 gi|124121737|gb|EAY40480.1| rRNA methylase, putative [Vibrio cholerae MZO-3]
          Length = 178

 Score = 45.4 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S +++ L +   P N+GA++R+A  ++   +          +         + E I  + 
Sbjct: 5   STVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-RAVKFQTDTQNSHERIGLVE 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + +LT  L        + + +        L      ++   + G E   L  +  + A  
Sbjct: 64  MDDLTAGLDSE----VKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVDQAHH 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 120 VVYVPTHGCM---NLAATVNVVLY---DRLAK 145


>gi|322834489|ref|YP_004214516.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
 gi|321169690|gb|ADW75389.1| RNA methyltransferase, TrmH family, group 1 [Rahnella sp. Y9602]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 20/148 (13%)

Query: 144 PHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           P N+GA  R+          I+ ++ +   E+  +A  +   L++   +  S L +AL  
Sbjct: 13  PENVGAAARAMKTMGFASLRIVDSEAHLKPEAGWVAHGSQDILQNA--LHFSTLAEALAD 70

Query: 202 MHSWGFQTIGLSSDSKKPLE-------QEIKNDKI------ALILGAEGKGLRPKTQETA 248
           +    F     +    K          Q    +K       AL+ G E  GL  +  E A
Sbjct: 71  I---DFTVATTARSRAKFHYYCTPQELQVQLEEKSQWVNHAALVFGREDSGLTNEELELA 127

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
             +  + M     +LN+  A  V  Y  
Sbjct: 128 DVLTGVPMVADYPSLNLGQAVMVFCYQL 155


>gi|71893495|ref|YP_278941.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
          Length = 146

 Score = 45.0 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 12/129 (9%)

Query: 162 IITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHSWG---FQTIGLSSDSK 217
            I        E   L + A+G L   I +    N  +  +K            G    ++
Sbjct: 2   HIIMPIAFDLEPKHLKRPAAGILLSEIEHEIHKNWQNFSEKYGQKNLFFITRYGQKLYTE 61

Query: 218 KPLEQEIKNDK-IALILGAEGKGLRPKTQ----ETATSMAHLHMPGIIKALNVSNAAAVA 272
                EI+  K I  + G E  G+  +      E       + M    ++LN++N   + 
Sbjct: 62  VDFYTEIETKKDIFFVFGRESTGIPIEILKKNKEKC---LRIPMIAKARSLNLANTVVII 118

Query: 273 LYITQNHFA 281
            Y       
Sbjct: 119 AYEFHRQLN 127


>gi|260773392|ref|ZP_05882308.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
 gi|260612531|gb|EEX37734.1| tRNA:Cm32/Um32 methyltransferase [Vibrio metschnikovii CIP 69.14]
          Length = 242

 Score = 45.0 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        E AV A++ + A         + +
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQMVL----VAPECAVDAQAIALAAGASDIALNAQV 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGLR 241
              L +  +     +G S+ S+  LE  + +                +A++ G E  GL 
Sbjct: 63  VSTLSEAVAECGLVVGSSARSRT-LEWPMLDPRQCGEQFAIEGQTHPVAVVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A     Y  +
Sbjct: 122 NEELQLCHYHVCIPANPEYSSLNLAMAVQTLCYEIR 157


>gi|296314460|ref|ZP_06864401.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
           polysaccharea ATCC 43768]
 gi|296838750|gb|EFH22688.1| RNA methyltransferase, TrmH family, group 1 [Neisseria
           polysaccharea ATCC 43768]
          Length = 271

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 61/203 (30%), Gaps = 51/203 (25%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
                P L   LD +R     ++L     P NIG+  R   A    G+      +P+  A
Sbjct: 1   MASEKPALPAYLDNIR-----IILTRTGHPSNIGSAAR---AMKTMGLHKLTIVAPNLMA 52

Query: 175 V----------------------LAKSASGALEHIPYIRISNLTDALQK-MHSWGFQTIG 211
                                      ASGA      +  + +   L + +         
Sbjct: 53  TPMTENPPVFDPEHPQSFELPEESFILASGAA---DVLHNAEIVATLNEALADTAIACAL 109

Query: 212 LSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG 258
            S   +               L+   + +K+AL+ G E  GL  +  +    +  +   G
Sbjct: 110 TSRRREITAPLQTPRDLVPELLQTANRGEKVALVFGNETFGLSIEEVQACNRLMTI--NG 167

Query: 259 IIK--ALNVSNAAAVALYITQNH 279
                +LN++ A  V  Y   + 
Sbjct: 168 NPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|284799663|ref|ZP_05984511.2| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
           NJ9703]
 gi|284797648|gb|EFC52995.1| RNA methyltransferase, TrmH family, group 1 [Neisseria subflava
           NJ9703]
          Length = 304

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   LD +R     ++L   + P NIG+  R+        +                
Sbjct: 38  KPALPAYLDNIR-----IILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENP 92

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSK- 217
                E     K        ASGA + +    I+ +L +AL         TI  +  S+ 
Sbjct: 93  PVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 146

Query: 218 ---------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+AL+ G E  GL  +  +    +  +   G    
Sbjct: 147 REITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDY 204

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 205 FSLNLAQAVQVVCYEIFSQ 223


>gi|84687187|ref|ZP_01015068.1| tRNA/rRNA methyltransferase (SpoU) [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664775|gb|EAQ11258.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2654]
          Length = 249

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +     Q   VL       NIGA  R+ + F  + +          +      ASGA   
Sbjct: 4   EDQTGPQPAFVLVRPQMGENIGAAARAMLNFGLERMRVVGPRDGWPNPKAVAMASGAGRV 63

Query: 187 IPYIRI-SNLTDALQKMHSWGFQTIGLSSDSKKPLEQ-----------EIKNDKIALILG 234
           +    +  +L  AL     + + T   S +  KP+               +  ++A++ G
Sbjct: 64  LDAAVVYDDLPAALADC-DYVYATTARSRELAKPVRTPERAMAEARAMRAEGKRVAVLFG 122

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
            E  GL  +    A ++  + +     +LN++   +V L  Y     
Sbjct: 123 PERAGLENEDVSRANAIITVPVNPEFASLNLAQ--SVLLTAYEYGRQ 167


>gi|15601385|ref|NP_233016.1| rRNA methylase, putative [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153819784|ref|ZP_01972451.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457]
 gi|227812194|ref|YP_002812204.1| putative rRNA methylase [Vibrio cholerae M66-2]
 gi|229506208|ref|ZP_04395717.1| rRNA methylase [Vibrio cholerae BX 330286]
 gi|229509934|ref|ZP_04399414.1| rRNA methylase [Vibrio cholerae B33]
 gi|229516505|ref|ZP_04405952.1| rRNA methylase [Vibrio cholerae RC9]
 gi|229605747|ref|YP_002876451.1| rRNA methylase [Vibrio cholerae MJ-1236]
 gi|254849785|ref|ZP_05239135.1| 23S rRNA methyltransferase [Vibrio cholerae MO10]
 gi|255746599|ref|ZP_05420546.1| rRNA methylase [Vibrio cholera CIRS 101]
 gi|262158809|ref|ZP_06029922.1| rRNA methylase [Vibrio cholerae INDRE 91/1]
 gi|298499432|ref|ZP_07009238.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757]
 gi|9658040|gb|AAF96528.1| rRNA methylase, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126509683|gb|EAZ72277.1| rRNA methylase, putative [Vibrio cholerae NCTC 8457]
 gi|227011336|gb|ACP07547.1| putative rRNA methylase [Vibrio cholerae M66-2]
 gi|229346386|gb|EEO11357.1| rRNA methylase [Vibrio cholerae RC9]
 gi|229352379|gb|EEO17319.1| rRNA methylase [Vibrio cholerae B33]
 gi|229356559|gb|EEO21477.1| rRNA methylase [Vibrio cholerae BX 330286]
 gi|229372233|gb|ACQ62655.1| rRNA methylase [Vibrio cholerae MJ-1236]
 gi|254845490|gb|EET23904.1| 23S rRNA methyltransferase [Vibrio cholerae MO10]
 gi|255736353|gb|EET91751.1| rRNA methylase [Vibrio cholera CIRS 101]
 gi|262029382|gb|EEY48033.1| rRNA methylase [Vibrio cholerae INDRE 91/1]
 gi|297541413|gb|EFH77464.1| 23S rRNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 170

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S +++ L +   P N+GA++R+A  ++   +          +         + E I  + 
Sbjct: 5   STVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-RAVKFQTDTQNSHERIGLVE 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           + +LT  L        + + +        L      ++   + G E   L  +  + A  
Sbjct: 64  MDDLTAGLDSE----VKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVDQAHY 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 120 VVYVPTHGCM---NLAATVNVVLY---DRLAK 145


>gi|163802460|ref|ZP_02196353.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
 gi|159173761|gb|EDP58576.1| RNA methyltransferase, TrmH family protein [Vibrio sp. AND4]
          Length = 239

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++  +     +  V  ++ + A       + + +
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLSQLVLVE----PQCEVDDQTLALAAGAGDIAQNATV 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGLR 241
              L++  +     +G S+ S+  LE  +                  +AL+ G E  GL 
Sbjct: 63  VSTLEEAIADCGLVVGSSARSRT-LEWPMLEPRECGEKFAVEGQKHPVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
               +       +       +LN++ A
Sbjct: 122 NDELQKCHYHVCIPANPEYSSLNLAMA 148


>gi|254486709|ref|ZP_05099914.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
 gi|214043578|gb|EEB84216.1| RNA methyltransferase, TrmH family [Roseobacter sp. GAI101]
          Length = 257

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 22/169 (13%)

Query: 127 DAVRNSQL-LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALE 185
           DAV N ++   VL       NIGA  R+   F  D +          +      ASGA  
Sbjct: 10  DAVENPKIPAFVLVRPQMGENIGAAARAMWNFGLDRMRIVSPRDGWPNPSAVAMASGAGR 69

Query: 186 HIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIAL 231
            +    + +  D    +    F     ++  +   +Q    +              ++A+
Sbjct: 70  LLDEAVVHD--DLAGALGDAAF-VFATTARERDLTKQVYSPEAAMAKAAELIAQGQRVAV 126

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
           + G E  GL       A ++  + +     +LN++    V L  Y    
Sbjct: 127 MFGPERAGLENDDIARANAIVSVPVNPEFASLNLAQC--VLLMGYEWMR 173


>gi|37527165|ref|NP_930509.1| hypothetical protein plu3285 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81418808|sp|Q7N222|TRMJ_PHOLL RecName: Full=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;
           AltName: Full=tRNA Cm32/Um32 methyltransferase
 gi|36786599|emb|CAE15659.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 241

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IILVETSHTGNMGSTARAMKTMGLTNLYLVNPLVQPDSHAIALSAGAS----DVIGHATI 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLR 241
            D+L K +   G   IG S+ S+                 Q+ ++  +A++ G E  GL 
Sbjct: 63  VDSLDKALAGCGL-VIGTSARSRTLSWPMVEPRECGERSVQQAEHASVAIVFGRERVGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +      ++       +LN++ A
Sbjct: 122 NEELQKCHYHLNIPTNPEYGSLNLAMA 148


>gi|332748915|gb|EGJ79339.1| hypothetical protein SF434370_4804 [Shigella flexneri 4343-70]
          Length = 261

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|270263887|ref|ZP_06192155.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
 gi|270042080|gb|EFA15176.1| putative RNA methyltransferase [Serratia odorifera 4Rx13]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIR 191
           QL +VL     P N+GA  R+        +                 A GA E +     
Sbjct: 2   QLHIVLVAPARPENVGAAARAMKTMGFTSLRIVD-SEAHLQPAARWVAHGAGEILDGVQT 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAEG 237
            + L+ AL  +      T+  ++ S+          ++              AL+ G E 
Sbjct: 61  FATLSQALADVD----FTVATTARSRARFHYYCTPQQLLGQLGERSQWVNQAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +  E A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELELADLLTGVPMQADYPSLNLGQA--VMVYCYQ 154


>gi|226356726|ref|YP_002786466.1| tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
 gi|226318716|gb|ACO46712.1| putative tRNA/rRNA methyltransferase [Deinococcus deserti VCD115]
          Length = 252

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 14/152 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P N+GA  R+ +      +           +     A  A + +   R+ 
Sbjct: 3   LAVVLVSPKTPGNVGAAARAMLNMGASDLRIVAPRCDYLDSQALAMAVHAGDLLRSARVF 62

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPL---EQEIKNDKI-------ALILGAEGKGLRPK 243
                 + +        G S+  +  L           +       AL+ G E  GL   
Sbjct: 63  PTLR--EALGDRDLSV-GTSARLRADLPAPRHPALIRPMVRQAAAPALVFGPEETGLINS 119

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             E       +   G   +LN+S A  +  Y 
Sbjct: 120 DLEQCQVTVRIP-TGNYASLNLSQAVLLVCYE 150


>gi|317490852|ref|ZP_07949288.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920399|gb|EFV41722.1| RNA methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 257

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 22/170 (12%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L    LD +R     +VL   +   N+G+  R+        +         +S  +A SA
Sbjct: 11  LRVSMLDNIR-----IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVKPDSQAIALSA 65

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND------------- 227
             +      I  + + D   +  +     +G S+ S+      ++               
Sbjct: 66  GAS----DVIGNATIVDTFDEAIAGCSLVVGTSARSRSLPWPMLEPRECGQRSAMESEHA 121

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +A++ G E  GL  +  +       +       +LN++ A  +  Y  +
Sbjct: 122 PVAIVFGRERVGLTNEELQKCHYHVAIPANPEYSSLNLAMAVQIISYEIR 171


>gi|171920658|ref|ZP_02695161.2| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|185179064|ref|ZP_02555388.2| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024288|ref|ZP_02570194.2| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518663|ref|ZP_02557090.2| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|188524453|ref|ZP_02558302.2| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195867597|ref|ZP_03079599.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198273695|ref|ZP_03206230.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554398|ref|YP_002284668.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225550819|ref|ZP_03771768.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551032|ref|ZP_03771978.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903391|gb|EDT49680.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184209056|gb|EDU06099.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018961|gb|EDU57001.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997773|gb|EDU66870.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|195659660|gb|EDX53040.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|195660654|gb|EDX53909.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|198249723|gb|EDY74504.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541899|gb|ACI60128.1| RNA methyltransferase, TrmH family [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225378847|gb|EEH01212.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379973|gb|EEH02335.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 172

 Score = 45.0 bits (106), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 19/148 (12%)

Query: 146 NIGAILRSAVAFSCD-------GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           N G I R  V F+ +       G I  K           ++++  L+ +      +  + 
Sbjct: 14  NTGNIARMCVGFNANLHLIRPYGFILDKARFD---KDFVRASANHLDELKLFEYDDFYEF 70

Query: 199 LQ-----KMHSWGFQTIGLSSDSKKPLEQEIKN-DKIALILGAEGKGLRPKTQETATS-M 251
           +      +   + F   G    +    +    N + + L+ G E  G+            
Sbjct: 71  IAKNNIIENQIYFFTRYGT--KAPCDYKYANLNKEDVYLVFGKESTGIDHDILRKYPQNW 128

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQNH 279
             +     +++LN++N+ A+ +Y     
Sbjct: 129 IRIPTSINLRSLNIANSVAMGIYEVLRQ 156


>gi|307292706|ref|ZP_07572552.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
 gi|306880772|gb|EFN11988.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
           L-1]
          Length = 351

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 125 TLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGAL 184
            ++   +   ++VL       NIG   R+ + F    +          +     SA+GA 
Sbjct: 109 AMNEPASPPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVSPRDGWPNPDAGPSAAGAD 168

Query: 185 EHIPYIRI-SNLTDALQKM--------HSWGF-QTIGLSSDSKKPLEQEIKNDKIALILG 234
             +    +   L DA+              G  + +    ++ + +       + A + G
Sbjct: 169 VVLDKAEVFETLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHAAA--GRSAYVFG 226

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            E  GL  +    A  +  + +     +LN++ A  +  Y     
Sbjct: 227 PERSGLETEDVALARKILTVPINPEFGSLNLAQAVILCAYEWSKQ 271


>gi|269137921|ref|YP_003294621.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267983581|gb|ACY83410.1| hypothetical tRNA/rRNA methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304557972|gb|ADM40636.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           FL6-60]
          Length = 235

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 16/144 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA  R+        +      +  E       A GA + +   R  +     Q +   
Sbjct: 15  NVGAAARAMKTMGFTSLRIVDSKADGE-PAARWVAHGAGDILDGARHFDTLA--QALADV 71

Query: 206 GFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRPKTQETATSMA 252
            F     +    +        +               AL+ G E  GL          + 
Sbjct: 72  DFSVASTARSRARFHYYCTPQELCAVLQEKQRWMASCALVFGREDSGLTNDELALVDLLT 131

Query: 253 HLHMPGIIKALNVSNAAAVALYIT 276
            + M     +LN+  A  V  Y  
Sbjct: 132 GVPMAADYPSLNLGQAVMVFCYQL 155


>gi|322505046|emb|CBZ14721.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 465

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN--AAAVALYITQN 278
           L+LG E  GL  K  E      ++   G I +L  S   A A+A + T  
Sbjct: 137 LVLGME-NGLSQKVVEECDLCMYIPQYGSIGSL--SMISALAIAAHSTWR 183


>gi|300939394|ref|ZP_07154060.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
 gi|300455722|gb|EFK19215.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           21-1]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDVIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|332528697|ref|ZP_08404674.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
 gi|332041763|gb|EGI78112.1| tRNA/rRNA methyltransferase [Hylemonella gracilis ATCC 19624]
          Length = 254

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 15/152 (9%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPYIR-ISNLTDALQK 201
            N+GA  R+      + ++  +    +        + ASGA + +   R +  L +AL  
Sbjct: 18  GNVGAAARAIKTMGFEELVLVRPRWANVLRRQETIERASGANDVLNRARIVETLDEALDG 77

Query: 202 M----------HSWGFQTIGLSSDSKKPLEQEIKNDK--IALILGAEGKGLRPKTQETAT 249
           M            +G  T        + +      +   IA + G+E  G++ +    A 
Sbjct: 78  MTHLCATAMTPRDFGPPTRAPREHFAQFVAAAPTEESQGIAFLFGSERYGMKNEDVYRAH 137

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               +       +LN++ A  V  Y  +   +
Sbjct: 138 VCLSIPTHPRFGSLNLAAALQVIAYEWRQALS 169


>gi|239997256|ref|ZP_04717780.1| putative cold-shock RNA methyltransferase [Alteromonas macleodii
           ATCC 27126]
          Length = 169

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 143 DPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQK 201
           +P N+ +ILR+A  +    +  T +      A    + + A   + P I + +L + + +
Sbjct: 17  NPVNVASILRAAGCYGVASVFYTGQR--YRFAKDFNADTKAFHKVIPTIGVDDLKEVVPE 74

Query: 202 MHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               G   + +   +   PL           +LG E   +          + ++      
Sbjct: 75  ----GASVVAVELVEGATPLPLFEHPSNAFYLLGPEDGSIGEDVLSWCDHVVYVP---TF 127

Query: 261 KALNVSNAAAVALYIT 276
             +N++  A V LY  
Sbjct: 128 SCMNLAATANVLLYDR 143


>gi|254173135|ref|ZP_04879808.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
 gi|214032544|gb|EEB73373.1| RNA methyltransferase, TrmH family, group 1 [Thermococcus sp. AM4]
          Length = 233

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 36/163 (22%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL     P NIG I R+   F    ++     +P+ +      A  A + +   + +  
Sbjct: 4   LVLVEPEGPANIGMIARTMKNFGFSRLVL---VNPNLTEESYAYAVHATDVLERAVIVDT 60

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK---PLEQEI-----------KNDKIALILGAEGKGL 240
             +AL         T+G +    K   P    +              ++ L  G E  GL
Sbjct: 61  FDEALGLFD----LTVGTTGKPGKRFIPYRAPLYPWELRETLNGYTGEVGLFFGRESIGL 116

Query: 241 RPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
           +    E    +  +        M       N++ A AV LY  
Sbjct: 117 KNDELERLDLIVTIPTSDAYPVM-------NLAQAVAVILYEL 152


>gi|169236111|ref|YP_001689311.1| hypothetical protein OE2923F [Halobacterium salinarum R1]
 gi|167727177|emb|CAP13963.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 241

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 34/156 (21%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-----IPYIRISNLTDAL 199
            N+G I R+   F  + ++                A G   H     +P  R  +    +
Sbjct: 15  GNVGTIARAMKNFGFEELLL----VDPPYLGRDSEAYGFAGHAREDILPEARELSFDALV 70

Query: 200 QKMHSWGFQTIG---LSSDSKKPLEQE--------IKNDKIALILGAEGKGLRPKTQETA 248
            + H+ GF  I     +S ++ P                  AL+ G E  GL        
Sbjct: 71  SEFHTVGFTAITNEDATSHTRFPFRTPAELGDSLRDVEAPTALVFGRERVGLTNDELARI 130

Query: 249 TSMAHLH-------MPGIIKALNVSNAAAVALYITQ 277
             +  +        M       N+  +A VALY  +
Sbjct: 131 DEVGSIPASDDYPVM-------NLGQSATVALYELR 159


>gi|325204341|gb|ADY99794.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           M01-240355]
          Length = 271

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 57/202 (28%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--- 175
            P L   LD +R     ++L   + P NIG+  R   A    G+      +P+  A    
Sbjct: 5   KPALPAYLDNIR-----IILTRTSHPANIGSAAR---AMKTMGLHKLTIVAPNLMATPMT 56

Query: 176 -------------------LAKSASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSD 215
                                  ASGA + +    I+ +L +AL         TI  +  
Sbjct: 57  ENPPVFHPDDVQSFVLPEESFILASGAADVLENATIAASLDEALAD------TTIACALT 110

Query: 216 SK----------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI 259
           S+                + L+   + +K+AL+ G E  GL  +  +    +  +   G 
Sbjct: 111 SRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEAQACNRLMTI--NGN 168

Query: 260 IK--ALNVSNAAAVALYITQNH 279
               +LN++ A  V  Y   + 
Sbjct: 169 PDYFSLNLAQAVQVVCYEIFSQ 190


>gi|300932909|ref|ZP_07148165.1| putative rRNA methylase, SpoU class [Corynebacterium resistens DSM
           45100]
          Length = 180

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 50/158 (31%), Gaps = 23/158 (14%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---------------RYSPSESAVL 176
           S L ++ D    P N G  +R          +                   Y       L
Sbjct: 5   SGLHVLFDRPQIPPNTGNAIRMCAGTGATLHLAGPLGFNFEEKHVRRAGLDYHDLADVKL 64

Query: 177 AKSASGALEH----IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
             S   A +     +P    S+LTDA + + S   +    ++  +K            L+
Sbjct: 65  HDSVWDAFDSLCGCLPRSAASSLTDATRPLSSAPSRVFAFTTKGEKWFTDVAYQPGDVLL 124

Query: 233 LGAEGKGLRPKTQE--TATSMAHLHM-PGIIKALNVSN 267
            G E  GL          T    + M PG  +++N+SN
Sbjct: 125 FGPEPTGLDEDVLNDPRVTEWVRIPMLPGR-RSMNLSN 161


>gi|269103289|ref|ZP_06155986.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163187|gb|EEZ41683.1| tRNA:Cm32/Um32 methyltransferase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 243

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++           +  ++ + A      +  + +
Sbjct: 7   IVLIGTSHSGNIGSAARAMKVMGLTNLVL----VDPACEIDEQAMALAAGASDIVENATI 62

Query: 196 TDALQK-MHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLR 241
              L + +   G   IG S+ S+     ++                 +A++ G E  GL 
Sbjct: 63  VKTLDETIGDCGL-VIGSSARSRTLEWPQLDPRESGIKTVNESASHPVAILFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
               +      ++       +LN++ A
Sbjct: 122 NDELQKCHCHVYIPANPEYSSLNLAMA 148


>gi|301024668|ref|ZP_07188315.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
 gi|299880311|gb|EFI88522.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           196-1]
          Length = 235

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIP 188
           N ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I 
Sbjct: 7   NMRITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIK 66

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGA 235
                      + +H   F     +    K            +  +K       AL+ G 
Sbjct: 67  VF-----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGR 121

Query: 236 EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           E  GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 122 EDSGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 161


>gi|271502114|ref|YP_003335140.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345669|gb|ACZ78434.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech586]
          Length = 233

 Score = 45.0 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           Q  ++L     P N+GA  R+        +      +          A G+ + +  + +
Sbjct: 2   QFYIILVAPARPENVGAAARAMKTMGFGRLRIVDSRA-HLEPAARWVAHGSGDILDAVDV 60

Query: 193 -SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAEG 237
              L DAL  +      T+  ++ S+       +  ++              AL+ G E 
Sbjct: 61  FPTLADALADID----FTVATTARSRARFHYYCEPAQLLAVLQEKQQWISSAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADILTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|163857771|ref|YP_001632069.1| methyltransferase [Bordetella petrii DSM 12804]
 gi|163261499|emb|CAP43801.1| probable methyltransferase [Bordetella petrii]
          Length = 255

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 15/156 (9%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-S 193
           ++   + P N+G+  R+        ++  +   P  +        ASGA + +   R+ +
Sbjct: 11  IMVQPSHPGNVGSAARAIKTMGFADLVLVEPRYPDMTSQPEAVALASGATDVLERARVCA 70

Query: 194 NLTDALQ----------KMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLR 241
            L +AL           ++   G     +  +++          +   A++LG E  GL 
Sbjct: 71  TLEEALAPVTLAFALTARVRDLGPPPCDIRQAAELASQHLAAPGSGCAAVVLGTERAGLT 130

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                    + H+       +LNV+ A  +A +  +
Sbjct: 131 NAQIALCQRICHIPANPEYSSLNVAQALQLAAWELR 166


>gi|157368927|ref|YP_001476916.1| putative RNA methyltransferase [Serratia proteamaculans 568]
 gi|157320691|gb|ABV39788.1| RNA methyltransferase, TrmH family, group 1 [Serratia
           proteamaculans 568]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIR 191
           QL +VL     P N+GA  R+        +                 A GA + +     
Sbjct: 2   QLHIVLVAPARPENVGAAARAMKTMGFTSLRIVD-SEAHLQPAARWVAHGAGDILDGVQT 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAEG 237
            + L  AL  +      T+  ++ S+          ++              AL+ G E 
Sbjct: 61  FATLEQALADVD----FTVATTARSRARFHYYCTPQQLLGQLSERSQWVGQAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +  E A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELELADLLTGVPMQADYPSLNLGQA--VMVYCYQ 154


>gi|325928099|ref|ZP_08189312.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
           91-118]
 gi|325541597|gb|EGD13126.1| RNA methyltransferase, TrmH family, group 1 [Xanthomonas perforans
           91-118]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           +A + G E  GL     +   +  H+       +LN++ A  V  Y  +
Sbjct: 86  VAFVFGRERTGLTNDELQLCHAAVHIPSDPQFSSLNLAAAVQVLAYEVR 134


>gi|254673050|emb|CBA07666.1| RNA methyltransferase, TrmH family, group 1 [Neisseria meningitidis
           alpha275]
          Length = 271

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   LD +R     ++L   + P NIG+  R+        +                
Sbjct: 5   KPALPAYLDNIR-----IILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENP 59

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDS-- 216
                E     K        ASGA + +    I+ +L +AL         TI  +  S  
Sbjct: 60  PVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 113

Query: 217 --------------KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+AL+ G E  GL  +  +    +  +   G    
Sbjct: 114 REITAPLQTPRDLVSELLQTTNRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDY 171

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 172 FSLNLAQAVQVVCYEIFSQ 190


>gi|168035469|ref|XP_001770232.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678449|gb|EDQ64907.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 287

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       N+G++         +           ++     ++   LEHI       L
Sbjct: 29  VVLVSPQHAGNVGSVNPQCDFRGVEA----------QTMAANVTSRSKLEHIRV--TDTL 76

Query: 196 TDALQKMHSW-GFQ----TIGL-SSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            +AL+      GF      + +  +         + +  +A++ G E +GL  +     T
Sbjct: 77  PEALKDCSMAVGFTRRSGILRIPDTRLANLCIPPLDSLNLAIVFGREDRGLTNEELMYCT 136

Query: 250 SMAHLHMPGIIKALNVSNAAAVAL 273
            +  +       +LN+S+A AV L
Sbjct: 137 HVCSIPSIQSAGSLNLSHAVAVVL 160


>gi|326795561|ref|YP_004313381.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
 gi|326546325|gb|ADZ91545.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas
           mediterranea MMB-1]
          Length = 252

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 25/157 (15%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL +   P N+GAI R+        +      +   S      A+GA++ +     +S 
Sbjct: 7   IVLINTFHPGNVGAIARAMKNMGLSNLYLVDP-NDYPSDEATSRAAGAVDLLENATIVST 65

Query: 195 LTDAL----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L +A+           +  ++    +     ++  + +  ++D +A++ G E  GL  + 
Sbjct: 66  LEEAISDCSLVIGTSARHRTFQLPIMNARECAETVIPEAKQHD-VAIVFGRETTGLLNEE 124

Query: 245 QETATSMAHL------HMPGIIKALNVSNAAAVALYI 275
                   ++       +      LN+S A  +  Y 
Sbjct: 125 IAQCHRQVYIDANDEYPV------LNISQAVQIVAYE 155


>gi|319637892|ref|ZP_07992658.1| SpoU methylase [Neisseria mucosa C102]
 gi|317401047|gb|EFV81702.1| SpoU methylase [Neisseria mucosa C102]
          Length = 271

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   LD +R     ++L   + P NIG+  R+        +                
Sbjct: 5   KPALPAYLDNIR-----IILTRTSHPSNIGSAARAMKTMGLHKLTIVAPNLMATPMTENP 59

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSK- 217
                E     K        ASGA + +    I+ +L +AL         TI  +  S+ 
Sbjct: 60  PVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 113

Query: 218 ---------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+AL+ G E  GL  +  +    +  +   G    
Sbjct: 114 REITAPLQTPRELVPELLQATNRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDY 171

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 172 FSLNLAQAVQVVCYEIFSQ 190


>gi|270265373|ref|ZP_06193634.1| hypothetical protein SOD_m01050 [Serratia odorifera 4Rx13]
 gi|270040777|gb|EFA13880.1| hypothetical protein SOD_m01050 [Serratia odorifera 4Rx13]
          Length = 207

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 3/80 (3%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDAN--LPHPFPVKTVPPQ 99
              + E   +YG +   A   +    I +    ++   R          +      V  +
Sbjct: 119 RRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVVDEE 178

Query: 100 TIDKIVGKEAVHQGLALETA 119
            + K  G E  H G+     
Sbjct: 179 ELAKASGTE-HHGGVCFLIK 197


>gi|167552173|ref|ZP_02345926.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205323136|gb|EDZ10975.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
           R   L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  RT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|88602300|ref|YP_502478.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
           JF-1]
 gi|88187762|gb|ABD40759.1| RNA methyltransferase TrmH, group 1 [Methanospirillum hungatei
           JF-1]
          Length = 251

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 28/153 (18%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G   R    F    +I     +    A +   AS A + + +  +  L +  +  H 
Sbjct: 15  GNVGFAARVMKNFGFTDLILINPCTIGNEAKIR--ASHADDVLEHATVMTLDEVFRTSH- 71

Query: 205 WGFQTIGLSSD--------------SKKPLEQE--IKNDKIALILGAEGKGLRPKTQETA 248
              + I  +                S K +       +  I+++ G E  GL  +    A
Sbjct: 72  ---RVIATTGSLSYSACHPTRMPFYSPKEIRDLIRDLDGTISILFGRENWGLSNEEVRRA 128

Query: 249 TSMAHL---HMPGIIKALNVSNAAAVALYITQN 278
             +  +    +  II   N+S+A  V  Y   N
Sbjct: 129 DIICTIPTSPLYPII---NLSHAVGVICYELAN 158


>gi|74314837|ref|YP_313256.1| putative RNA methyltransferase [Shigella sonnei Ss046]
 gi|194434185|ref|ZP_03066453.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|256025322|ref|ZP_05439187.1| putative RNA methyltransferase [Escherichia sp. 4_1_40B]
 gi|301646924|ref|ZP_07246769.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|307136603|ref|ZP_07495959.1| putative RNA methyltransferase [Escherichia coli H736]
 gi|331640448|ref|ZP_08341596.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
 gi|73858314|gb|AAZ91021.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|194417622|gb|EDX33723.1| RNA methyltransferase, TrmH family, group 1 [Shigella dysenteriae
           1012]
 gi|301074912|gb|EFK89718.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           146-1]
 gi|323166212|gb|EFZ51990.1| hypothetical protein SS53G_3575 [Shigella sonnei 53G]
 gi|331040194|gb|EGI12401.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H736]
 gi|332097902|gb|EGJ02875.1| hypothetical protein SD15574_0046 [Shigella dysenteriae 155-74]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDVIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|331645102|ref|ZP_08346213.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           M605]
 gi|330909848|gb|EGH38358.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli AA86]
 gi|331045859|gb|EGI17978.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           M605]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDVIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
           +        + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  KT-----LAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|198244887|ref|YP_002218469.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197939403|gb|ACH76736.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
          Length = 228

 Score = 45.0 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
           R   L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  RT--LADA---LHDVDFTVATTACSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|297519997|ref|ZP_06938383.1| putative RNA methyltransferase [Escherichia coli OP50]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|284006760|emb|CBA72018.1| hypothetical tRNA/rRNA methyltransferase [Arsenophonus nasoniae]
          Length = 242

 Score = 44.6 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 21/148 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IILVETSHTGNMGSTARAMKTMGLTNLYLVNPLILPDSQAIALSAGAS----DVIGQATI 62

Query: 196 TDALQK-MHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGL 240
            + L++ +       IG S                 +K + Q I N  +A+I G E  GL
Sbjct: 63  VETLEQALLGCNL-VIGTSVRARTLSWPQVTPRECGEKTIHQAI-NSPVAIIFGRERVGL 120

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNA 268
             +  +      H+       +LN++ A
Sbjct: 121 TNEELQKCQYHLHIPTNPEYGSLNLAMA 148


>gi|291618423|ref|YP_003521165.1| YfhQ [Pantoea ananatis LMG 20103]
 gi|291153453|gb|ADD78037.1| YfhQ [Pantoea ananatis LMG 20103]
 gi|327394816|dbj|BAK12238.1| tRNA/rRNA methyltransferase YfhQ [Pantoea ananatis AJ13355]
          Length = 248

 Score = 44.6 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL   +   N+G++ R+        +         +S  ++  A+GA + I   + + +
Sbjct: 7   IVLVETSHTGNMGSVARAMKTMGLTNLYLVNPLVKPDSQAIS-LAAGASDVIGEAKIVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK---PLEQEIKND----------KIALILGAEGKGLR 241
           L +A+          +G S+ S+    P+    +             +AL+ G E  GL 
Sbjct: 66  LDEAIAGCS----LVVGTSARSRSLPWPMLDARECGVKSIEEGQQAPVALVFGRERVGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +       +       +LN++ A  +  Y  +
Sbjct: 122 NDELQKCHYHVAIQANPEYSSLNLAMAVQIIAYEVR 157


>gi|221368992|ref|YP_002520088.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides KD131]
 gi|221162044|gb|ACM03015.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides KD131]
          Length = 243

 Score = 44.6 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 54/160 (33%), Gaps = 19/160 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RIS 193
           + +L       NIGA  R+ + F    +          +      ASGA   + +     
Sbjct: 6   VFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFP 65

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKG 239
            + +A++            ++  ++  +  +  +              ++ ++ G E  G
Sbjct: 66  TVAEAIRDCD----YVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTG 121

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L  +    A ++  + +     +LN++  A +  Y  +  
Sbjct: 122 LENEDVALANAIVTVPVNPEFFSLNLAQCALLLAYEWRRQ 161


>gi|254509335|ref|ZP_05121424.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
           parahaemolyticus 16]
 gi|219547731|gb|EED24767.1| RNA methyltransferase, TrmH family, group 1 [Vibrio
           parahaemolyticus 16]
          Length = 241

 Score = 44.6 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        + +V  ++ + A         + +
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSNLVL----VDPQCSVDEQALALAAGASDIAENAKI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
             +L +  S     +G S+ S+                 +E ++  +AL+ G E  GL  
Sbjct: 63  VSSLTEAVSDCALVVGSSARSRTLEWPMLEPRECGVKFVEEGQSAPVALVFGRERTGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
              +T      +       +LN++ A
Sbjct: 123 DELQTCHYHVCIPANPEYSSLNLAMA 148


>gi|156084686|ref|XP_001609826.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154797078|gb|EDO06258.1| hypothetical protein BBOV_II003030 [Babesia bovis]
          Length = 314

 Score = 44.6 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 55/189 (29%), Gaps = 11/189 (5%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           NH     +      + +    + + L     +            ++  T      L   +
Sbjct: 92  NHPVAIHLYKLAHSAAYRKYRKLVLLTSTKLIREYCERHG-ACSRIYTTSYENPVLLEPS 150

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV----LDHV 141
                  V     + + K+    +   G+  E  P   P    +  + L++      +  
Sbjct: 151 VRAERVIV--CSDKLLQKVADLHSYKGGVVAEV-PYPQPA-QHLGQAALVLCVAPKCNAA 206

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRY-SPSESAVLAKSASGALEHIPYIRISNLTDALQ 200
            D      ++R+A A     +   K       +    +++   L+ +PY+ +    +A++
Sbjct: 207 RDNGATATLVRTAHALQWQALWMLKHGEHDLLNPRDIRASQNCLDTMPYV-VGTAQEAIK 265

Query: 201 KMHSWGFQT 209
                    
Sbjct: 266 FAKDNDLLI 274


>gi|332083398|gb|EGI88629.1| hypothetical protein SB521682_5281 [Shigella boydii 5216-82]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDVIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PALAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSLWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|311281011|ref|YP_003943242.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
 gi|308750206|gb|ADO49958.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           SCF1]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L +VL       NIGA  R+        +               + A GA + +    I
Sbjct: 2   RLSIVLVSPARAENIGAAARAMKTMGFTEMRIVD-SVAHREPGAQRVAHGAGDIL--ENI 58

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEGKG 239
           +      + +H   F     +    +        +   +           AL+ G E  G
Sbjct: 59  TTWATLAEALHDVDFTIATTARSRARFHYYATPQELVPLLEEKSQWLQHAALVFGREDSG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 119 LTNDELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|15805603|ref|NP_294299.1| RNA methyltransferase [Deinococcus radiodurans R1]
 gi|6458273|gb|AAF10156.1|AE001916_2 RNA methyltransferase, putative [Deinococcus radiodurans R1]
          Length = 255

 Score = 44.6 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 14/153 (9%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L +VL     P NIGA  R+ +      +           +     A  A + +   +I
Sbjct: 12  SLAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDYLDSQAVAMAVHAGDLLRSAKI 71

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----------ALILGAEGKGLRP 242
                  + +        G S+  +  L       ++          AL+ G E  GL  
Sbjct: 72  YPTLR--EALADRDLSV-GTSARIRADLPAPRHPAQVRGLVREAAAPALVFGPEETGLIN 128

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
              E       +   G   +LN++ A  +  Y 
Sbjct: 129 SDLEQCQVTVRIP-TGDYASLNLAQAVLLVCYE 160


>gi|323190317|gb|EFZ75593.1| hypothetical protein ECRN5871_1472 [Escherichia coli RN587/1]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|168230251|ref|ZP_02655309.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471963|ref|ZP_03077947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458327|gb|EDX47166.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335164|gb|EDZ21928.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
           R   L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  RT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|16132220|ref|NP_418820.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89111111|ref|AP_004891.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|170083789|ref|YP_001733109.1| rRNA methyltransferase [Escherichia coli str. K-12 substr. DH10B]
 gi|218703151|ref|YP_002410780.1| putative RNA methyltransferase [Escherichia coli IAI39]
 gi|238903490|ref|YP_002929286.1| putative rRNA methyltransferase [Escherichia coli BW2952]
 gi|301330240|ref|ZP_07222898.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|312970097|ref|ZP_07784279.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           1827-70]
 gi|729917|sp|P37005|LAST_ECOLI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
 gi|537243|gb|AAA97299.1| ORF_o228b [Escherichia coli str. K-12 substr. MG1655]
 gi|1790865|gb|AAC77356.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|85677142|dbj|BAE78392.1| predicted rRNA methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|169891624|gb|ACB05331.1| predicted rRNA methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|218373137|emb|CAR21031.1| rRNA methyltransferase [Escherichia coli IAI39]
 gi|238863085|gb|ACR65083.1| predicted rRNA methyltransferase [Escherichia coli BW2952]
 gi|260450786|gb|ACX41208.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli DH1]
 gi|300843746|gb|EFK71506.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           78-1]
 gi|310337595|gb|EFQ02706.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           1827-70]
 gi|315138957|dbj|BAJ46116.1| putative RNA methyltransferase [Escherichia coli DH1]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|239816538|ref|YP_002945448.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           S110]
 gi|239803115|gb|ACS20182.1| RNA methyltransferase, TrmH family, group 1 [Variovorax paradoxus
           S110]
          Length = 243

 Score = 44.6 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 17/146 (11%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPYIRISN 194
           +L   +   N+GA  R+      D ++       +        + ASGA   +  +  + 
Sbjct: 6   ILIQTSHAGNVGAAARAMKTMGFDDLVLVAPRWANVLRREETIQRASGA---LDVLTNAR 62

Query: 195 LTDALQKMHSWGFQTIGLSS-------DSKKPLEQEIKNDK-----IALILGAEGKGLRP 242
           + + L +           +         ++ P E      K     +A + G+E  G+R 
Sbjct: 63  IVETLDEALDGVTHLCATAMIPRDFGPPTRTPREHLEPLAKQGEQHVAFLFGSERFGMRN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
           +          +       +LN+  A
Sbjct: 123 EDVYRCNVALSIPTDPKFGSLNLGAA 148


>gi|323964754|gb|EGB60222.1| RNA methyltransferase [Escherichia coli M863]
 gi|323975837|gb|EGB70933.1| RNA methyltransferase [Escherichia coli TW10509]
 gi|327250029|gb|EGE61759.1| hypothetical protein ECSTEC7V_5191 [Escherichia coli STEC_7v]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|62183015|ref|YP_219432.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224586415|ref|YP_002640214.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130648|gb|AAX68351.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224470943|gb|ACN48773.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322615759|gb|EFY12679.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620607|gb|EFY17467.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322621765|gb|EFY18615.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627490|gb|EFY24281.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630797|gb|EFY27561.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637984|gb|EFY34685.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642253|gb|EFY38861.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645972|gb|EFY42490.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651139|gb|EFY47524.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656604|gb|EFY52892.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658737|gb|EFY54994.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661820|gb|EFY58036.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666433|gb|EFY62611.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672409|gb|EFY68521.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676281|gb|EFY72352.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679628|gb|EFY75673.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684338|gb|EFY80342.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322717522|gb|EFZ09093.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191821|gb|EFZ77070.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198910|gb|EFZ84008.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323200976|gb|EFZ86045.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209373|gb|EFZ94306.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212939|gb|EFZ97741.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216682|gb|EGA01407.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219820|gb|EGA04299.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226115|gb|EGA10332.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228768|gb|EGA12897.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236620|gb|EGA20696.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239879|gb|EGA23926.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242073|gb|EGA26102.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247486|gb|EGA31441.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250588|gb|EGA34470.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323259317|gb|EGA42959.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263805|gb|EGA47326.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265600|gb|EGA49096.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270045|gb|EGA53493.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
           R   L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  RT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|126726420|ref|ZP_01742261.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
 gi|126704283|gb|EBA03375.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacterales bacterium
           HTCC2150]
          Length = 256

 Score = 44.6 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 23/160 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           ++L       NIGA  R+   F  + +          +      ASGA + +       +
Sbjct: 20  IILVRPQMGENIGAAARAMWNFGLERMRIVDPRDGWPNPKATAMASGAAQVMDNVSIYDD 79

Query: 195 LTDALQKMHSWGFQTIGLSSDSKK--------------PLEQEIKNDKIALILGAEGKGL 240
             DA+   +         ++  +                 +      K+ ++ G E  GL
Sbjct: 80  TRDAVADCN----YVFATTARGRDLTKPIMSPEAAMKHTRDLMASGQKVGILFGPERAGL 135

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
                  A ++  + +     +LN+     V L  Y  + 
Sbjct: 136 ENDDISRANAIISVPVNPAFASLNLGQC--VLLLSYEYRR 173


>gi|99081177|ref|YP_613331.1| RNA methyltransferase TrmH, group 1 [Ruegeria sp. TM1040]
 gi|99037457|gb|ABF64069.1| RNA methyltransferase TrmH group 1 [Ruegeria sp. TM1040]
          Length = 249

 Score = 44.6 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 19/164 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
                ++V        NIG   R+   F  D +          +      ASGA   +  
Sbjct: 6   PQPDFVLV--RPQMGENIGGAARAMWNFGLDRMRIVAPRDGWPNPKAVAMASGAGRLLDE 63

Query: 190 IRIS-NLTDALQKMHSWGFQTIG---------LSSDS--KKPLEQEIKNDKIALILGAEG 237
            +++ +L +AL    ++ F T            S +   KK  E  ++ +K+A++ G E 
Sbjct: 64  AQLAQDLPEALADC-TYVFATTARPRELTKPVFSPEGAMKKAAELMVQGEKVAVLFGPER 122

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
            GL       A ++  + +     +LN++    V L  Y  +  
Sbjct: 123 AGLENDDIAKANAIITVPVNPEFASLNLAQC--VLLTAYEWRRQ 164


>gi|168244498|ref|ZP_02669430.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205336649|gb|EDZ23413.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
                   +  +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT-----LVDALHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|268530568|ref|XP_002630410.1| C. briggsae CBR-EXOS-8 protein [Caenorhabditis briggsae]
 gi|187030474|emb|CAP30338.1| CBR-EXOS-8 protein [Caenorhabditis briggsae AF16]
          Length = 361

 Score = 44.6 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +G E +G+             +   G  ++LNV   AA+ +
Sbjct: 1   MGDEKEGVPVGLLRAVDQTVEIKQVGHTRSLNVHVTAALMI 41


>gi|258626473|ref|ZP_05721314.1| predicted rRNA methylase [Vibrio mimicus VM603]
 gi|258581255|gb|EEW06163.1| predicted rRNA methylase [Vibrio mimicus VM603]
          Length = 175

 Score = 44.6 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S +++ L +   P N+GA++R+A  +S   +        + +A          E I  +
Sbjct: 4   QSTVIIGLHNPKSPTNVGAVMRAAGCYSATQVRYNGSRY-NRAARFQTDTQNIQERIDLV 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + +LT  L        + + +        L      +K   + G E   L     + A 
Sbjct: 63  EMVDLTAGLD----QDVEIVCVELVVGATALPHFEHPEKAIYLFGPEDGSLPQDVVDKAH 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYIT 276
            + ++   G +   N++    V +Y  
Sbjct: 119 HVVYVPTHGCM---NLAATVNVVMYDR 142


>gi|260223171|emb|CBA33466.1| hypothetical protein Csp_B19200 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 286

 Score = 44.6 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 44/189 (23%)

Query: 126 LDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGA 183
           L    +++ +++  + +   N+GA  R+      D ++      P+        + ASGA
Sbjct: 4   LSVCMHTRFILI--NTSHAGNVGAAARAMKTMGFDDLVLVAPRWPNVLRREETIQRASGA 61

Query: 184 LEHIPYIR-ISNLTDALQKMHSWGFQ-TIGLSSD------------------SKKPLEQE 223
           L+ +   R +  L +AL      G       +                    SK+ L   
Sbjct: 62  LDVLDKCRIVETLDEALD-----GITHLCATAMTPRDFGPPTTTPREHFEVLSKQELLAH 116

Query: 224 IKNDK---------------IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           I +                 I  + G+E  G+R +          +       +LN+  A
Sbjct: 117 IPSAPGADLMSESSPKGQQGIGFLFGSERFGMRNEDVYRCHVCLSIPSNPSFGSLNIGAA 176

Query: 269 AAVALYITQ 277
             V  Y  +
Sbjct: 177 LQVIAYEWR 185


>gi|319940963|ref|ZP_08015300.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805536|gb|EFW02331.1| hypothetical protein HMPREF9464_00519 [Sutterella wadsworthensis
           3_1_45B]
          Length = 288

 Score = 44.6 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 38/172 (22%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            ++  +L     P NIG+  R     +   +        +      ++   AL       
Sbjct: 9   RRVCFILCEPAHPGNIGSAAR-----AIKTMGFRDLRVVAPREADYRTHEEAL-----AY 58

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKP------LEQEI--------------------K 225
            ++  D L+   S  + T+  + +           ++E                      
Sbjct: 59  ATSSADVLEASKS--YATLAQALEGVTYAWAMTGYDREFGAPLTPMRQAASETASRLSAL 116

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              IA + G E  GL  +        A +       +LN+S A  +A Y  Q
Sbjct: 117 EGSIAFVFGTERSGLTNEEVCLCQGCAAIPADPASPSLNLSQAVQIAAYEMQ 168


>gi|253774967|ref|YP_003037798.1| RNA methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254164328|ref|YP_003047438.1| putative RNA methyltransferase [Escherichia coli B str. REL606]
 gi|300930632|ref|ZP_07146021.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|253326011|gb|ACT30613.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976231|gb|ACT41902.1| predicted rRNA methyltransferase [Escherichia coli B str. REL606]
 gi|253980389|gb|ACT46059.1| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
 gi|300461483|gb|EFK24976.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           187-1]
 gi|313848845|emb|CAQ34761.2| predicted rRNA methyltransferase [Escherichia coli BL21(DE3)]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|213417006|ref|ZP_03350150.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 234

 Score = 44.6 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|281181548|dbj|BAI57878.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|291285838|ref|YP_003502656.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O55:H7 str. CB9615]
 gi|293417877|ref|ZP_06660499.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|209748734|gb|ACI72674.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|290765711|gb|ADD59672.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O55:H7 str. CB9615]
 gi|291430595|gb|EFF03593.1| tRNA/rRNA methyltransferase [Escherichia coli B185]
 gi|320638624|gb|EFX08329.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           G5101]
 gi|320649071|gb|EFX17653.1| putative RNA methyltransferase [Escherichia coli O157:H- str. H
           2687]
 gi|320660301|gb|EFX27805.1| putative RNA methyltransferase [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665397|gb|EFX32481.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|71908729|ref|YP_286316.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
 gi|71848350|gb|AAZ47846.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
          Length = 164

 Score = 44.6 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 11/135 (8%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS-ASGALEHIPYIRISNLTDALQKM 202
           P N+G+I+R+A  +  + +  T +    E AV  ++        +P I + +L   +   
Sbjct: 29  PENVGSIMRAAGCYGVNTVFYTGKR--YERAVEFRTDTKQVHLQLPLIGVEDLQQVIPF- 85

Query: 203 HSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              G   + +      KPL +    ++   I G E   L+         + ++   G + 
Sbjct: 86  ---GCVPVAIEVHPDAKPLTEYQHPERAFYIFGPEDGSLKKNVTSWCKDIVYIPTHGCM- 141

Query: 262 ALNVSNAAAVALYIT 276
             N++    V LY  
Sbjct: 142 --NLAATVNVVLYDR 154


>gi|331650890|ref|ZP_08351918.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
 gi|331051344|gb|EGI23393.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli M718]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|89068982|ref|ZP_01156364.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
           HTCC2516]
 gi|89045563|gb|EAR51627.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola granulosus
           HTCC2516]
          Length = 247

 Score = 44.6 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 21/149 (14%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL------ 199
           NIGA  R+   F  D +          +      ASGA   +   ++ + T+A       
Sbjct: 20  NIGAAARAMWNFGLDRMRLVAPRDGWPNPSAVALASGAGRLLDEAQLFDTTEAAISDTTF 79

Query: 200 --------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                   +++           SD+     +  + +K+A++ G E  G+       A+++
Sbjct: 80  VYATTARPRELTKPVMTPEAAMSDAAA---RVARGEKVAVMFGPERAGMENADIAAASAI 136

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQN 278
             + +     +LN++    V L  Y  + 
Sbjct: 137 VSVPVNPDFPSLNLAQC--VLLLGYEWRR 163


>gi|293408092|ref|ZP_06651932.1| RNA methyltransferase [Escherichia coli B354]
 gi|291472343|gb|EFF14825.1| RNA methyltransferase [Escherichia coli B354]
          Length = 228

 Score = 44.6 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|303290747|ref|XP_003064660.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453686|gb|EEH50994.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 447

 Score = 44.6 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S + +VL       N+GAI R+  AF C+ +      +   +     +A GA   +    
Sbjct: 139 SDVAVVLVGTKKAGNVGAIARACGAFECEDLRLVAPRADPYTRASLSAAKGAQHIVHGAG 198

Query: 192 I-SNLTDALQ 200
           +  ++ DAL+
Sbjct: 199 VYDDVEDALR 208


>gi|262403692|ref|ZP_06080250.1| rRNA methylase [Vibrio sp. RC586]
 gi|262350196|gb|EEY99331.1| rRNA methylase [Vibrio sp. RC586]
          Length = 170

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 12/152 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           S +++ L +   P N+GA++R+A  ++   +          +         + E I  + 
Sbjct: 5   STVIIGLHNPKSPTNVGAVMRAAGCYNATQVRYNGTRYA-RAVKFQTDTQNSHERIGLVE 63

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD-SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS 250
           +++LT  L        + + +        L      ++   + G E   L  +  + A  
Sbjct: 64  MNDLTAGLDSE----VKIVCVELAVGATALPHFTHPEQAIYLFGPEDGSLPQEVVDQAHH 119

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + ++   G +   N++    V LY   +  AK
Sbjct: 120 VVYVPTHGCM---NLAATVNVVLY---DRLAK 145


>gi|331661363|ref|ZP_08362287.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA143]
 gi|331061278|gb|EGI33241.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA143]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|225469103|ref|XP_002269052.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 845

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           + L+LG E +G+         +   +   G++++LNV  + 
Sbjct: 14  LVLVLGREKEGIPVDIIHILDACIEIPQLGVVRSLNVHVSG 54


>gi|298368968|ref|ZP_06980286.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282971|gb|EFI24458.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 271

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 51/201 (25%)

Query: 117 ETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITT----------- 165
           +  P L   L+ +R     +VL   + P NIG+  R+        ++             
Sbjct: 3   QLKPALPDFLNNIR-----IVLTRTSHPANIGSAARAMKTMGLSDLVLVAPNLMSTPMTA 57

Query: 166 -KRYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDS 216
                  ++    K        ASGA + +   RI+  L DAL         TI  +  S
Sbjct: 58  VPPVFDPQNPQNFKLPEESFTLASGAADVLHNARITATLDDALAD------TTISCALTS 111

Query: 217 K----------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
           +                + L+   + +K+AL+ G E  GL  +  +    +  +   G  
Sbjct: 112 RRREITAPLQTPRKLVPELLQAARRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNP 169

Query: 261 K--ALNVSNAAAVALYITQNH 279
              +LN++ A  V  Y   + 
Sbjct: 170 DYFSLNLAQAVQVVCYEIFSQ 190


>gi|294141663|ref|YP_003557641.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293328132|dbj|BAJ02863.1| RNA methyltransferase, TrmH family, putative [Shewanella violacea
           DSS12]
          Length = 179

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 25/155 (16%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--------ESAVLAKSASGALEHIPY 189
           L +   P N+G ++R+A  +  + I+ T +             +    +       HIP 
Sbjct: 15  LVNPKSPTNVGGVMRAAGCYQANEILYTGKRYALAAKHRGEQYNTDTKRVGQ----HIPL 70

Query: 190 IRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQET 247
               +L  A     + G + + +       PL + +  DK   + G E  G +     + 
Sbjct: 71  TATDDLLLA----RTDGVKLVCVDLVVGAIPLPEFVHPDKAIYVFGPE-DGTIDQALIDE 125

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           A ++ ++   G +   N++++  V LY   +  AK
Sbjct: 126 ADAVVYVPTIGCM---NLASSVNVLLY---DRLAK 154


>gi|261338997|ref|ZP_05966855.1| hypothetical protein ENTCAN_05202 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318828|gb|EFC57766.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 49/159 (30%), Gaps = 20/159 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIR 191
            L +VL       NIGA  R+        +      +  E A     A G+ + +     
Sbjct: 2   HLSIVLVQPARAENIGAAARAMKTMGFTELRIVGSVAHLEPATRW-VAHGSGDIVDNITT 60

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEGK 238
              L DA   +H   F     +    K        +   +           AL+ G E  
Sbjct: 61  YDTLADA---LHDISFTVATTARSRAKFHYYATPEELVPLLREKSQWLTHAALVFGREDS 117

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 118 GLTNDELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|307313663|ref|ZP_07593282.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|306906486|gb|EFN36999.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli W]
 gi|315063704|gb|ADT78031.1| predicted rRNA methyltransferase [Escherichia coli W]
 gi|323380214|gb|ADX52482.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli KO11]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|15834615|ref|NP_313388.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
 gi|168750958|ref|ZP_02775980.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756823|ref|ZP_02781830.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762757|ref|ZP_02787764.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766687|ref|ZP_02791694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776617|ref|ZP_02801624.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781695|ref|ZP_02806702.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785048|ref|ZP_02810055.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|168797978|ref|ZP_02822985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|195937674|ref|ZP_03083056.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807856|ref|ZP_03250193.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812204|ref|ZP_03253533.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820258|ref|ZP_03260578.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397370|ref|YP_002273923.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325430|ref|ZP_03441514.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796399|ref|YP_003081236.1| putative RNA methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226760|ref|ZP_05941041.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255164|ref|ZP_05947697.1| RNA methyltransferase [Escherichia coli O157:H7 str. FRIK966]
 gi|13364839|dbj|BAB38784.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768001|gb|EDU31845.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014896|gb|EDU53018.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000755|gb|EDU69741.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356035|gb|EDU74454.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364086|gb|EDU82505.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366929|gb|EDU85345.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4501]
 gi|189375093|gb|EDU93509.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC869]
 gi|189379506|gb|EDU97922.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC508]
 gi|208727657|gb|EDZ77258.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733481|gb|EDZ82168.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740381|gb|EDZ88063.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158770|gb|ACI36203.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC4115]
 gi|209748730|gb|ACI72672.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|209748732|gb|ACI72673.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|209748736|gb|ACI72675.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|217321651|gb|EEC30075.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595799|gb|ACT75160.1| RNA methyltransferase [Escherichia coli O157:H7 str. TW14359]
 gi|320190480|gb|EFW65130.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. EC1212]
 gi|326345283|gb|EGD69026.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. 1125]
 gi|326346863|gb|EGD70597.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           O157:H7 str. 1044]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|67478105|ref|XP_654474.1| RNA methyltransferase, TrmH family [Entamoeba histolytica
           HM-1:IMSS]
 gi|56471520|gb|EAL49084.1| RNA methyltransferase, TrmH family, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 350

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 17/178 (9%)

Query: 116 LETAPLLSPTLDA--VRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS--PS 171
           ++  P      D     + ++ ++L       NIGA+ R    +  + +           
Sbjct: 77  MKITPEKEKVQDERTFGDIKMSVILVRPMHEDNIGAVGRLCANYGINKLYIVNPLCEIGE 136

Query: 172 ESAVLAKSASGALEHIPYIRISNLTD----------ALQKMHSWGFQTIGLSSDSKKPLE 221
           ES  +++  +G +E+    +                A +       + +    ++   L 
Sbjct: 137 ESIKVSRHGNGYIENAVICKSLEEVRKDCTLLVGYTARESSGQKNKRILMTMQEAGDMLS 196

Query: 222 QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL-YITQN 278
                  + L+ G E  GL  +  +    +  + +      LN+S+A  +AL Y+   
Sbjct: 197 T--MKGCVGLVFGNESNGLNTEECDACDLLNKIDIRSHYPVLNLSHAVGIALNYMHMR 252


>gi|91774342|ref|YP_567034.1| RNA methyltransferase TrmH, group 1 [Methanococcoides burtonii DSM
           6242]
 gi|91713357|gb|ABE53284.1| RNA methyltransferase [Methanococcoides burtonii DSM 6242]
          Length = 231

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 35/154 (22%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG++ R+   F    +I                AS A      +  +   + +++   
Sbjct: 16  GNIGSVARAMKNFGFSDLILVNPC--ELKMEARAFASHAY---DILESAKTVETIEEALE 70

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDK----------------IALILGAEGKGLRPKTQETA 248
                I  +  +   +++ I+                   IA+I G E  G   +  + +
Sbjct: 71  GSDLVIATTGITGMKIDEHIRMPPYTPRDLKVKFSGMSGTIAVIFGREDHGFTNEELKLS 130

Query: 249 TSMAHLH-------MPGIIKALNVSNAAAVALYI 275
             +  +        M       N+S+A  + LY 
Sbjct: 131 DVIVSIPTSKIYPIM-------NLSHAVTIILYE 157


>gi|215489715|ref|YP_002332146.1| putative RNA methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966121|ref|ZP_07780347.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           2362-75]
 gi|215267787|emb|CAS12251.1| predicted rRNA methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289364|gb|EFR17258.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           2362-75]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|56480615|ref|NP_710140.2| putative RNA methyltransferase [Shigella flexneri 2a str. 301]
 gi|191167401|ref|ZP_03029216.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|218556938|ref|YP_002389852.1| putative RNA methyltransferase [Escherichia coli IAI1]
 gi|300824445|ref|ZP_07104558.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|309795680|ref|ZP_07690096.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|331666231|ref|ZP_08367112.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA271]
 gi|331680570|ref|ZP_08381229.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
 gi|56384166|gb|AAN45847.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|190902541|gb|EDV62275.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli B7A]
 gi|218363707|emb|CAR01367.1| rRNA methyltransferase [Escherichia coli IAI1]
 gi|281603740|gb|ADA76724.1| putative rRNA methylase [Shigella flexneri 2002017]
 gi|300523087|gb|EFK44156.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           119-7]
 gi|308120804|gb|EFO58066.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           145-7]
 gi|313646239|gb|EFS10701.1| uncharacterized tRNA/rRNA methyltransferase lasT [Shigella flexneri
           2a str. 2457T]
 gi|331066442|gb|EGI38319.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           TA271]
 gi|331072033|gb|EGI43369.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli H591]
 gi|332749167|gb|EGJ79590.1| hypothetical protein SFK671_5214 [Shigella flexneri K-671]
 gi|332749663|gb|EGJ80079.1| hypothetical protein SF274771_5233 [Shigella flexneri 2747-71]
 gi|332768790|gb|EGJ98969.1| RNA methyltransferase, TrmH , group 1 family protein [Shigella
           flexneri 2930-71]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|300905395|ref|ZP_07123164.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300947474|ref|ZP_07161658.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300955633|ref|ZP_07167988.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|301303509|ref|ZP_07209632.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|300317470|gb|EFJ67254.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           175-1]
 gi|300402764|gb|EFJ86302.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           84-1]
 gi|300452908|gb|EFK16528.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           116-1]
 gi|300841236|gb|EFK68996.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           124-1]
 gi|315255733|gb|EFU35701.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           85-1]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|330959300|gb|EGH59560.1| hypothetical protein PMA4326_12164 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 166

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T +     +           + IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGKRY-ERARDFITDTKKIHQDIPLIGIEDLKS 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         +  + L +    D+   I G E   L  + ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVEGARALPEYTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYIT 276
            G +   N++    V LY  
Sbjct: 126 EGCM---NLAATVNVVLYDR 142


>gi|330879586|gb|EGH13735.1| hypothetical protein PSYMP_25410 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 166

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T +     +           + IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGKRY-ERARDFITDTKKIHQDIPLIGIEDLKS 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         +  + L +    D+   I G E   L  + ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVEGARALPEYTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYIT 276
            G +   N++    V LY  
Sbjct: 126 EGCM---NLAATVNVVLYDR 142


>gi|302187110|ref|ZP_07263783.1| hypothetical protein Psyrps6_12195 [Pseudomonas syringae pv.
           syringae 642]
 gi|330952608|gb|EGH52868.1| hypothetical protein PSYCIT7_14813 [Pseudomonas syringae Cit 7]
          Length = 166

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T +     +           + IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGKRY-ERARDFITDTKKIHQDIPLIGIEDLKS 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         +  + L +    D+   I G E   L  + ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVEGARALPEYTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYIT 276
            G +   N++    V LY  
Sbjct: 126 EGCM---NLAATVNVVLYDR 142


>gi|28871068|ref|NP_793687.1| hypothetical protein PSPTO_3916 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969699|ref|ZP_03397834.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301383550|ref|ZP_07231968.1| hypothetical protein PsyrptM_12996 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062116|ref|ZP_07253657.1| hypothetical protein PsyrptK_19191 [Pseudomonas syringae pv. tomato
           K40]
 gi|302130106|ref|ZP_07256096.1| hypothetical protein PsyrptN_01860 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28854318|gb|AAO57382.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925507|gb|EEB59067.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 165

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 9/140 (6%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T +     +           + IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGKRY-ERARDFITDTKKIHQDIPLIGIEDLKS 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         +  + L +    D+   I G E   L  + ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVEGARALPEYTHPDRALYIFGPEDGSLDQEIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYIT 276
            G +   N++    V LY  
Sbjct: 126 EGCM---NLAATVNVVLYDR 142


>gi|194439268|ref|ZP_03071347.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|194421750|gb|EDX37758.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           101-1]
 gi|315616225|gb|EFU96844.1| uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           3431]
 gi|323970852|gb|EGB66104.1| RNA methyltransferase [Escherichia coli TA007]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSDLRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|257465416|ref|ZP_05629787.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
 gi|257451076|gb|EEV25119.1| tRNA/rRNA methyltransferase [Actinobacillus minor 202]
          Length = 251

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL   +   NIG+  R+        +       P +   ++  A+GA + +   +  ++
Sbjct: 16  IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKQPIDEQAVS-LAAGAKDVLDNAQTFAS 74

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLE----------QEIKNDKIALILGAEGKGLR 241
             +A+   H      IG S+     +  L           Q     K+AL+ G E  GL 
Sbjct: 75  FEEAIADCHI----VIGTSARLRHLQNTLIEPRKCGEIAVQHTLKGKVALVFGRERIGLT 130

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +         ++       +LN++ A  +A Y  +
Sbjct: 131 NEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEVR 166


>gi|148298853|ref|NP_001091770.1| putative RNA methyltransferase [Bombyx mori]
 gi|110333471|gb|ABG67686.1| putative RNA methyltransferase [Bombyx mori]
          Length = 122

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 231 LILGAEGKGLRPKTQETATSM----AHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           LI+G E +G+   + + A+S      ++ +   + +LN   A AV     +  F +
Sbjct: 51  LIIGGETEGISEDSYKFASSRNGLRLNIPLIEGVDSLNTGMATAVIACEIKKQFVQ 106


>gi|72080482|ref|YP_287540.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 7448]
          Length = 146

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 12/129 (9%)

Query: 162 IITTKRYSPSESAVLAKSASGALEH-IPYIRISNLTDALQKMHSWG---FQTIGLSSDSK 217
            I        +   L + A+G L   I +    N  +  +K            G    ++
Sbjct: 2   HIIMPIAFDLDPKHLKRPAAGILLSEIEHEIHKNWQNFSEKYGQKNLFFITRYGQKLYTE 61

Query: 218 KPLEQEIKNDK-IALILGAEGKGLRPKTQ----ETATSMAHLHMPGIIKALNVSNAAAVA 272
                EI+  K I  + G E  G+  +      E       + M    ++LN++N   + 
Sbjct: 62  VDFYTEIETKKDIFFVFGRESTGIPIEILKKNKEKC---LRIPMIAKARSLNLANTVVII 118

Query: 273 LYITQNHFA 281
            Y       
Sbjct: 119 AYEFHRQLN 127


>gi|209694304|ref|YP_002262232.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|208008255|emb|CAQ78400.1| hypothetical tRNA/rRNA methyltransferase [Aliivibrio salmonicida
           LFI1238]
          Length = 242

 Score = 44.3 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        E  V  ++ + A         + +
Sbjct: 7   IVLVGTSHSGNIGSAARAMKVMGLTNMVL----VAPECEVDGQAIALAAGASDIANRARI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
              L +  S     IG S+ S+                 +E  +  IA + G E  GL  
Sbjct: 63  VSTLDEAISDCGLVIGSSARSRTLEWPMLEPREAGVKAIEEAPSHPIAFVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
           +  +       +       +LN++ A
Sbjct: 123 EELQKCHFHVCIPANPEYSSLNLAMA 148


>gi|218708087|ref|YP_002415606.1| putative RNA methyltransferase [Escherichia coli UMN026]
 gi|293403074|ref|ZP_06647171.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|298378601|ref|ZP_06988485.1| RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300896760|ref|ZP_07115266.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|301024920|ref|ZP_07188532.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
 gi|218435184|emb|CAR16142.1| rRNA methyltransferase [Escherichia coli UMN026]
 gi|291429989|gb|EFF03003.1| RNA methyltransferase [Escherichia coli FVEC1412]
 gi|298280935|gb|EFI22436.1| RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300359416|gb|EFJ75286.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           198-1]
 gi|300396295|gb|EFJ79833.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           69-1]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|192292727|ref|YP_001993332.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris TIE-1]
 gi|192286476|gb|ACF02857.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris TIE-1]
          Length = 399

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 17/159 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           +++L       NIG   R+   F    +   K      +    +SA+GA   +       
Sbjct: 19  VVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNVAAQRSAAGADHILNAVELFD 78

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRP 242
           ++ +A++   +  F T   + D  KP+            +        ++ G E  GL  
Sbjct: 79  SVAEAVKDC-TLLFATTARAHDQAKPVRGPEAAAQEIVAETASGGTTGIMFGRERHGLEN 137

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
                A  +    +     +LN++ A  V L  Y    H
Sbjct: 138 DEVALANRIVTFPVNPAFASLNLAQA--VLLMGYEWFKH 174


>gi|33861612|ref|NP_893173.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634189|emb|CAE19515.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 247

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 13/153 (8%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL   N P N+G+I R    F  + +          S    K A     +I   +I N 
Sbjct: 10  VVLVEPNGPLNVGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGYRYIDNCKIFNS 69

Query: 195 LTDALQKMHSWGFQTIG-------LSSDSKKPLEQEIKN----DKIALILGAEGKGLRPK 243
           +  A+         T G       +  +S + + + I +    + + ++ G E +GL   
Sbjct: 70  IEQAIFDC-DLVIATFGRIDLSNDIECESPEDISKWISSFVEINNLGILFGREDRGLSNN 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
               A  + ++       +LN+S+A ++ LY  
Sbjct: 129 ELLFAHKILNIKTSQNYPSLNLSHAVSIILYEL 161


>gi|300724149|ref|YP_003713466.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630683|emb|CBJ91348.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           nematophila ATCC 19061]
          Length = 244

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IILVETSHTGNMGSAARAMKTMGLSNLYLVNPLVQPDSNAIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            + L +  +     IG S+ S+                 +   +  +A++ G E  GL  
Sbjct: 63  VNTLDEALAGCELVIGTSARSRTLPWPMVEPRECGERCVKASNHSPVAIVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
           +  +      ++       +LN++ A
Sbjct: 123 EELQKCHYHLYIPTNPEYGSLNLAMA 148


>gi|319761837|ref|YP_004125774.1| RNA methyltransferase, trmh family, group 1 [Alicycliphilus
           denitrificans BC]
 gi|317116398|gb|ADU98886.1| RNA methyltransferase, TrmH family, group 1 [Alicycliphilus
           denitrificans BC]
          Length = 270

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 59/185 (31%), Gaps = 34/185 (18%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALE 185
           A   ++ +++    +   N+GA  R+      D ++      P+        + ASGAL+
Sbjct: 9   AFMKTRFILI--QTSHAGNVGAAARAMKTMGFDDLVLVAPRWPNVLRKEETIQRASGALD 66

Query: 186 HIPYIR-ISNLTDALQ----------------------------KMHSWGFQTIGLSSDS 216
            +   R ++ L +AL                              + +      G + ++
Sbjct: 67  VLENARIVATLDEALDGISHLCATAMTPRDFGPPTRTPRTHFDSLLKNQLPALDGRALEA 126

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
              +    +   +A + G+E  G+  +          +       +LN+  A  V  Y  
Sbjct: 127 DSAMNHGPEAG-VAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAVQVIAYEW 185

Query: 277 QNHFA 281
           +    
Sbjct: 186 RQALG 190


>gi|261326341|emb|CBH09167.1| SpoU type methylase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 481

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +ILG E  G+  + +       ++   G + +L
Sbjct: 142 IILGME-NGMSEEVRAGCDYCLYVPQYGSVGSL 173



 Score = 35.8 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 17/94 (18%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIGAI+R+A  F+C+ +I   R          + A G    +     + L D   +   
Sbjct: 264 RNIGAIMRNANVFNCEELIVLNRR-----KFNRRGAVGTHHVLTTTFHATLNDRSCQSRL 318

Query: 205 WGF------------QTIGLSSDSKKPLEQEIKN 226
            G+            +  G S  +    + ++  
Sbjct: 319 QGYVLWLLHQYYPYLKVYGASPSNDNDNDIDVAT 352


>gi|20094038|ref|NP_613885.1| hypothetical protein MK0600 [Methanopyrus kandleri AV19]
 gi|19887015|gb|AAM01815.1| Uncharacterized protein conserved in archaea [Methanopyrus kandleri
           AV19]
          Length = 157

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 64/163 (39%), Gaps = 21/163 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYIR 191
            + +V  +V+ P  +  + R+   F     + ++    +    + K+    LE  +  + 
Sbjct: 3   PVTVVYHNVHSPRKVEEMARTVAGFGAKRFVISRALGSAAQEGVPKAQRICLEAGVELLF 62

Query: 192 ISNLTDALQKMHSWGFQTIGLSSD--SKKPLE-----QEIKNDK-IALILGAEGKGLRPK 243
             +L +AL+ + S     +   ++    KPL+     +EI+ ++ +  + G+   GL  +
Sbjct: 63  FQDLEEALKAL-SPDVTYMAEDAEHGGAKPLDFDAVVEEIEQEREVCFVFGSARPGLTKQ 121

Query: 244 TQETATSMAHLHMPGIIKALNV----SNAAAVALYITQNHFAK 282
             E      ++      +  NV    + A  + L+  +    +
Sbjct: 122 ELELGDEAVYV----GTE-RNVGEVGAVA--ILLHELRKRLNQ 157


>gi|269963982|ref|ZP_06178289.1| predicted rRNA methylase [Vibrio harveyi 1DA3]
 gi|269831266|gb|EEZ85418.1| predicted rRNA methylase [Vibrio harveyi 1DA3]
          Length = 172

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++ L +   P N+GA+LR+A  +    +        S +         + E I  + + +
Sbjct: 8   IIGLYNPKSPTNVGAVLRAAGCYDAAQVRYNGTRY-SRAVKFQTDTQNSQERIQLVEMED 66

Query: 195 LTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           LT  +        + + +        L Q    +    + G E   L  +  + A  + +
Sbjct: 67  LTANVAD----DVEIVCVELVVGATALPQFTHPENAIYVFGPEDGSLPQEMIDKAHHVVY 122

Query: 254 LHMPGIIKALNVSNAAAVALYIT 276
           +   G +   N++    V LY  
Sbjct: 123 VPTHGCM---NLAATVNVVLYDR 142


>gi|205355311|ref|YP_002229112.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207859721|ref|YP_002246372.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|205275092|emb|CAR40184.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206711524|emb|CAR35909.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326630478|gb|EGE36821.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|91214121|ref|YP_544107.1| putative RNA methyltransferase [Escherichia coli UTI89]
 gi|237704139|ref|ZP_04534620.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91075695|gb|ABE10576.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           UTI89]
 gi|226902051|gb|EEH88310.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
          Length = 235

 Score = 44.3 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 52/160 (32%), Gaps = 18/160 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N ++ ++L       NIGA  R+        +            V    A G+ + I  I
Sbjct: 7   NMRITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPVARWVAHGSGDIIDNI 65

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
           ++       + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 66  KV--FKTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 123

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 124 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 161


>gi|126737716|ref|ZP_01753446.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           SK209-2-6]
 gi|126721109|gb|EBA17813.1| RNA methyltransferase, TrmH family, group 1 [Roseobacter sp.
           SK209-2-6]
          Length = 248

 Score = 44.3 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           NIGA  R+   F  D +          +      ASGA   +       +L  AL+   +
Sbjct: 20  NIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRLLDEALLAPDLPGALEDC-T 78

Query: 205 WGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + F T     +  KP+            +    +K+A++ G E  GL  +    A ++  
Sbjct: 79  FVFATTARPRELTKPVYTPEAAMRLAAEKIKSGEKVAVLFGPERAGLENEDIAKANAIIS 138

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           + +     +LN+     V L  Y  +  
Sbjct: 139 VPVNPDFASLNLGQC--VLLTAYEWRRQ 164


>gi|333009340|gb|EGK28796.1| hypothetical protein SFK218_0239 [Shigella flexneri K-218]
          Length = 228

 Score = 44.3 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|148653047|ref|YP_001280140.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
 gi|148572131|gb|ABQ94190.1| RNA methyltransferase, TrmH family, group 1 [Psychrobacter sp.
           PRwf-1]
          Length = 286

 Score = 44.3 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 65/167 (38%), Gaps = 29/167 (17%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK 178
           +P L   L++VR     +V+ +   P NIG+  R+ +      ++      P +   +A 
Sbjct: 20  SPDLRQRLNSVR-----IVMVNTTLPANIGSAARAMLTMGLTDLVVVNPKHPIDEDSIAH 74

Query: 179 SASGALEHIPYIRISN-LTDALQKM--------HSWGFQ--TIGLSSDSKKPLEQEIKND 227
            A+GA   +   R+ + L +AL                    +     ++  L++ I   
Sbjct: 75  -AAGAQSVLRDCRVVDTLDEALSDCQLVFAASSRQRHIPRPVVTPDEAAQLVLDRPIGET 133

Query: 228 KIALILGAEGKGLRPKTQETATSMAHL------HMPGIIKALNVSNA 268
           K+A++ G E +GL  +    A     +       +      LNV++A
Sbjct: 134 KVAILFGREDRGLTNEELALADYHIQIDANPDYPV------LNVASA 174


>gi|308808149|ref|XP_003081385.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
 gi|116059847|emb|CAL55554.1| SpoU rRNA methylase family protein (ISS) [Ostreococcus tauri]
          Length = 666

 Score = 44.3 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 53/185 (28%), Gaps = 41/185 (22%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGI-ITTKRYSPSESAVLAKSASGALEHIPYI 190
             ++ VL       N+G   R+   F  + + +   R   +   + A++   A   +  +
Sbjct: 47  RDVVFVLCRPEGAINVGTASRAMHNFGANDLRLVDPRCVDAGGRIDAEARMFAARGLDAV 106

Query: 191 RISN------------------LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALI 232
              +                  +     +        + L   +++  E+  +  ++A++
Sbjct: 107 LERDGRTTTTTSVSAATMDATLVVATCPRPRE-NVPVVSLREGARRVAEEVARGGRVAVL 165

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIK---------------------ALNVSNAAAV 271
            G E  GL     E A     +     +                      +LN+  A  +
Sbjct: 166 FGTEKSGLSNDEMEHAQFAVCVPTAANVNARGFTKYTGGASGGETDTSSMSLNLGMAVGI 225

Query: 272 ALYIT 276
             Y  
Sbjct: 226 VAYEL 230


>gi|298710915|emb|CBJ49268.1| expressed unknown protein [Ectocarpus siliculosus]
          Length = 1681

 Score = 44.3 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 231  LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQ 277
            L+LG E  GL             +   G++++LN   + A+ L  Y  Q
Sbjct: 1628 LVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQ 1676


>gi|241758643|ref|ZP_04756757.1| SpoU methylase family protein [Neisseria flavescens SK114]
 gi|241321154|gb|EER57350.1| SpoU methylase family protein [Neisseria flavescens SK114]
          Length = 295

 Score = 43.9 bits (103), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   LD +R     ++L   + P NIG+  R+      + +                
Sbjct: 29  KPALPAYLDNIR-----IILTRTSHPANIGSAARAMKTMGLNKLTIVAPNLMATPMTENP 83

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSK- 217
                E     K        ASGA + +    I+ +L +AL         TI  +  S+ 
Sbjct: 84  PVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 137

Query: 218 ---------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+AL+ G E  GL  +  +    +  +   G    
Sbjct: 138 REITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDY 195

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 196 FSLNLAQAVQVVCYEIFSQ 214


>gi|71734439|ref|YP_273805.1| hypothetical protein PSPPH_1553 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257483942|ref|ZP_05637983.1| hypothetical protein PsyrptA_11854 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628938|ref|ZP_06461892.1| hypothetical protein PsyrpaN_28001 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651080|ref|ZP_06482423.1| hypothetical protein Psyrpa2_25584 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486137|ref|ZP_07004200.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554992|gb|AAZ34203.1| conserved hypothetical protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298159144|gb|EFI00202.1| RNA methyltransferase, TrmH family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325222|gb|EFW81289.1| hypothetical protein PsgB076_07342 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330868064|gb|EGH02773.1| hypothetical protein PSYAE_12603 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330877492|gb|EGH11641.1| hypothetical protein Pgy4_11177 [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330894744|gb|EGH27405.1| hypothetical protein PSYMO_40295 [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989382|gb|EGH87485.1| hypothetical protein PLA107_30467 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331013128|gb|EGH93184.1| hypothetical protein PSYTB_26371 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 166

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+G+++R+A  +    +  T +     +           + IP I I +L  
Sbjct: 11  LYNPKSPENVGSVMRAAGCYGVASVFYTGKRY-ERARDFITDTKKIHQDIPLIGIEDLKS 69

Query: 198 ALQKMHSWG-FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM 256
            L      G         D  + L +    D+   I G E   L    ++    + ++  
Sbjct: 70  ILP----LGCIPVAVELVDGARALPEYTHPDRALYIFGPEDGSLDQDIRDWCEDVVYIPT 125

Query: 257 PGIIKALNVSNAAAVALYIT 276
            G +   N++    V LY  
Sbjct: 126 EGCM---NLAATVNVVLYDR 142


>gi|322492292|emb|CBZ27567.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 479

 Score = 43.9 bits (103), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN--AAAVALYITQNHFAK 282
           L+LG E  GL  +  +      ++   G + +L  S   A A+A + T     +
Sbjct: 137 LVLGME-NGLSQEVVDACNLCTYIPQYGSVGSL--SMLSALAIAAHSTWRAVVR 187



 Score = 36.9 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++ + + D  NIGA++R+A  F+C+ +    R          + A G  + +  +    
Sbjct: 251 VLIYNELGD-RNIGAVIRNANVFNCEYVAIVNRR-----RFNRRGAIGTHKVMNVLFFDT 304

Query: 195 LTDALQKMHSWGFQT 209
           + D   +    G++ 
Sbjct: 305 VNDDAARQRFEGYEV 319


>gi|297520721|ref|ZP_06939107.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Escherichia coli
           OP50]
          Length = 60

 Score = 43.9 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 48  NLFLYGVHTVSAALNNPSRKIFQLLATKNALAR---LDWDANLPHPFPVKTVPPQTIDK 103
           +  +YG+H V A L     +  ++   K    +       A       ++    Q +D+
Sbjct: 2   SEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDE 60


>gi|167989847|ref|ZP_02570947.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234736|ref|ZP_02659794.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168262343|ref|ZP_02684316.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464476|ref|ZP_02698379.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168822143|ref|ZP_02834143.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197262963|ref|ZP_03163037.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200386516|ref|ZP_03213128.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|195632601|gb|EDX51055.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197241218|gb|EDY23838.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197292006|gb|EDY31356.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|199603614|gb|EDZ02159.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205331570|gb|EDZ18334.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205341380|gb|EDZ28144.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205348701|gb|EDZ35332.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|261249679|emb|CBG27551.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996964|gb|ACY91849.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301161078|emb|CBW20616.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320089029|emb|CBY98785.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222432|gb|EFX47504.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132941|gb|ADX20371.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991406|gb|AEF10389.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 228

 Score = 43.9 bits (103), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|213580553|ref|ZP_03362379.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 154

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|16763388|ref|NP_459005.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144866|ref|NP_808208.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213163203|ref|ZP_03348913.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427599|ref|ZP_03360349.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213620574|ref|ZP_03373357.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213649674|ref|ZP_03379727.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865406|ref|ZP_03387525.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289806550|ref|ZP_06537179.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|25304298|pir||AH1076 probable RNA methyltransferase lasT [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505697|emb|CAD03431.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140505|gb|AAO72068.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 228

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|227114272|ref|ZP_03827928.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 228

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISNLTDALQKMHS 204
           N+GA  R+        +      +  +       A G+ + +      S L +AL  +  
Sbjct: 15  NVGAAARAMKTMGFSSLRIVG-STVHQEPAARWVAHGSGDILDNVQMFSTLAEALADV-- 71

Query: 205 WGFQTIGLSSDSKKPLEQ-------EIKNDKI------ALILGAEGKGLRPKTQETATSM 251
             F     +    K           ++  +K+      AL+ G E  GL  +  E A  +
Sbjct: 72  -DFTVATTARSRAKYHYYCTPAELTDVLQEKVQWMASAALVFGREDVGLTNEELELADVL 130

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M     +LN+  A  V +Y  Q
Sbjct: 131 TGVPMKADYPSLNLGQA--VMVYCYQ 154


>gi|295098529|emb|CBK87619.1| RNA methyltransferase, TrmH family, group 1 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 228

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 46/146 (31%), Gaps = 20/146 (13%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKMHS 204
           NIGA  R+        +      +          A G+ + +      + L DA   +H 
Sbjct: 15  NIGAAARAMKTMGFTDLRIVDSTA-HLEPAARWVAHGSGDILDNITTYATLADA---LHD 70

Query: 205 WGFQTIGLSSDSKKPLEQE-------------IKNDKIALILGAEGKGLRPKTQETATSM 251
             F     +    K                  +  +K AL+ G E  GL  +  E A  +
Sbjct: 71  ISFTVATTARSRAKFHYYATPAELVPMLEEKSLWLEKAALVFGREDSGLTNEELELADVL 130

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
               M     +LN+  A  V +Y  Q
Sbjct: 131 TGAPMVADYPSLNLGQA--VMVYCYQ 154


>gi|294140922|ref|YP_003556900.1| TrmH family RNA methyltransferase [Shewanella violacea DSS12]
 gi|293327391|dbj|BAJ02122.1| RNA methyltransferase, TrmH family, group 1 [Shewanella violacea
           DSS12]
          Length = 230

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKP--------------LEQEI 224
           +   A      +  + + D++  + +   Q I  ++  +                +EQ  
Sbjct: 44  AHWVAHGATDILERTLVVDSVADIRAQYDQLIATTARERGTPRQYLTPDELKGTLIEQSD 103

Query: 225 KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
              KIAL+ G E  GL     E     +++ +     +LN++ A
Sbjct: 104 SVKKIALLFGRESSGLSNSELELCDVFSYVPLINDYPSLNLAQA 147


>gi|332306692|ref|YP_004434543.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174021|gb|AEE23275.1| tRNA/rRNA methyltransferase (SpoU) [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 179

 Score = 43.9 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 14/163 (8%)

Query: 121 LLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSA 180
           L +P + +  +  + + + +   P N+G+ILR+A  +  D ++ T        A    + 
Sbjct: 7   LATPDISSPSDDSVTLCIINPKSPQNMGSILRAAGCYRADSVLYTGERYARARAFNTDTK 66

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG 239
           +  L +IP  +I                 + +   +   PL           + G E   
Sbjct: 67  NVGL-NIPLAQIDEPMP------EPHMAMVAVELVEGATPLPHFEHPKHAYYVFGPEDGS 119

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           +     +    + ++   G +   N++    V LY   +  AK
Sbjct: 120 IEQSILDKCQHVVYVPTTGCM---NLAATVNVLLY---DRLAK 156


>gi|332526708|ref|ZP_08402810.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332111111|gb|EGJ11143.1| tRNA/rRNA methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 231

 Score = 43.9 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 22/152 (14%)

Query: 145 HNIGAILRSAVAFSC-DGIITTKRYSPSESAV-LAKSASGALEHIPYIR-ISNLTDALQK 201
            N+GA  R+       D ++   R++           ASGA + +   R ++ L +AL  
Sbjct: 7   GNVGAAARAMKVMGFTDLVLVRPRWADVLQREETLAMASGATDVLAGARIVATLAEALD- 65

Query: 202 MHSWGFQTIGLSS----------DSKKPLEQEIK---NDKIALILGAEGKGLRPKTQETA 248
               G      ++           + +P   E+    +D++A + G E  GL        
Sbjct: 66  ----GVTHACATAMTPRDFGPPTAAPRPHFAELAARGDDRVAFVFGPERTGLANDDVYRC 121

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALY-ITQNH 279
                +       +LN++ A  +  Y   Q  
Sbjct: 122 HVCLSIPTHPDYGSLNLAQAVQILAYDWRQAQ 153


>gi|122921358|pdb|2O3A|A Chain A, Crystal Structure Of A Protein Af_0751 From Archaeoglobus
           Fulgidus
 gi|122921359|pdb|2O3A|B Chain B, Crystal Structure Of A Protein Af_0751 From Archaeoglobus
           Fulgidus
          Length = 178

 Score = 43.9 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 153 SAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           +A AF   GI    +  S  ES        G    I  +    L      +        G
Sbjct: 27  TARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVH-LTMYG 85

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA-A 270
           +    K  LE+  + DK+ +++GAE   + P+  E       +      +      AA A
Sbjct: 86  IPLPQK--LEEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSE-----VAALA 136

Query: 271 VAL 273
           V L
Sbjct: 137 VFL 139


>gi|261252065|ref|ZP_05944638.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
 gi|260935456|gb|EEX91445.1| tRNA:Cm32/Um32 methyltransferase [Vibrio orientalis CIP 102891]
          Length = 241

 Score = 43.9 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +   LA +A  A        +  L
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSNLVLVDPQCSVDEQTLALAAGAADIAENATVVDTL 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGLR 241
           T+A+          +G S+ S+  LE  +                  +AL+ G E  GL 
Sbjct: 67  TEAVADCA----LVVGSSARSRT-LEWPMLEPRECGQKFVSEGQESPVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
               +T      +       +LN++ A
Sbjct: 122 NDELQTCHYHVCIPANPEYSSLNLAMA 148


>gi|306815400|ref|ZP_07449549.1| putative RNA methyltransferase [Escherichia coli NC101]
 gi|305851062|gb|EFM51517.1| putative RNA methyltransferase [Escherichia coli NC101]
 gi|324007734|gb|EGB76953.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           57-2]
          Length = 228

 Score = 43.9 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++L       NIGA  R+        +            V    A G+ + I  I++
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPVARWVAHGSGDIIDNIKV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEGKG 239
                  + +H   F     +    K     +  +   +           AL+ G E  G
Sbjct: 61  --FKTLAESLHDVDFTVATTARSRAKYHYYAMPVELVPLLEEKSSWMSHAALVFGREDSG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 119 LTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|119476391|ref|ZP_01616742.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
           HTCC2143]
 gi|119450255|gb|EAW31490.1| RNA methyltransferase TrmH, group 1 [marine gamma proteobacterium
           HTCC2143]
          Length = 226

 Score = 43.9 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAE 236
           + +  L DA+      G   +G S+  ++              +  E+    +AL+ G E
Sbjct: 37  VVVDTLEDAVA---DCGL-VVGTSARGRRIPWPLVNPRVCAERVYPELTEHPVALVFGRE 92

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +GL  +  +      ++       +LN+  A  V  Y  +
Sbjct: 93  DRGLTNEELQVCNLHVNIPASEDYTSLNLGMAVQVVTYELR 133


>gi|204927155|ref|ZP_03218357.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323820|gb|EDZ09015.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 228

 Score = 43.9 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|148981772|ref|ZP_01816520.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145960739|gb|EDK26078.1| 23S rRNA methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 160

 Score = 43.9 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N+G+++R+A  +  + +  T             +    LE +P I +  L D +    
Sbjct: 24  PENVGSVMRAAGCYGANSVFYTGTRYDHARKFHTDTKEKHLE-LPLIGVEELKDIIPV-- 80

Query: 204 SWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLHMPGIIK 261
             G   + +   +  KPL       +   I G E  G L+ +  +      ++   G + 
Sbjct: 81  --GCVPVAVDLIEGAKPLPDYKHPPRAFYIFGPE-DGTLKKEITDFCRDTIYVPTNGCM- 136

Query: 262 ALNVSNAAAVALYITQNHFAK 282
             N++ +  V LY   +  AK
Sbjct: 137 --NLAASVNVVLY---DRLAK 152


>gi|56416369|ref|YP_153444.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197365290|ref|YP_002144927.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130626|gb|AAV80132.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096767|emb|CAR62391.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 228

 Score = 43.9 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|328950108|ref|YP_004367443.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450432|gb|AEB11333.1| RNA methyltransferase, TrmH family, group 1 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 235

 Score = 43.9 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 26/155 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSE--SAVLAKSASGALEHIPYIR-I 192
           +VL    +  N+G + R+   F    ++     +P     +   + +S A + +   R +
Sbjct: 4   VVLVGPREAANVGMVARAMKNFGLKELVL---VAPEIRDMSEAYRLSSRAHDVLERARIV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKN--------------DKIALILGAEGK 238
             L +A+           G ++  ++                        +AL+ G E  
Sbjct: 61  PTLDEAIADC----VLVAGTTARRRERYAGLAATPRAAAGLIRAAAARGPVALLFGRENF 116

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           GL  +  +    + H+       +LN++ A  V L
Sbjct: 117 GLFNEELDRCHYVLHIPTAPDYASLNLAQA--VLL 149


>gi|197249650|ref|YP_002149541.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197213353|gb|ACH50750.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 228

 Score = 43.9 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
           R   L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  RT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|323960117|gb|EGB55762.1| RNA methyltransferase [Escherichia coli H489]
          Length = 228

 Score = 43.5 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLANEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|206580923|ref|YP_002240548.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|290512648|ref|ZP_06552014.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
 gi|206569981|gb|ACI11757.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella pneumoniae
           342]
 gi|289774989|gb|EFD82991.1| tRNA/rRNA methyltransferase [Klebsiella sp. 1_1_55]
          Length = 228

 Score = 43.5 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 24/161 (14%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           +L ++L       N+GA  R+          I+ ++ +    +  +A  +   L+ +   
Sbjct: 2   RLTIILVAPARAENVGAAARAMKTMGFRDLRIVDSEAHLAPAARWVAHGSGDILDGV--- 58

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAE 236
             +        +H   F T+  ++ S+          ++              AL+ G E
Sbjct: 59  --TTYPTLAAALHDVDF-TVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGRE 115

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             GL  +    A  +  + M     +LN+    +V +Y  Q
Sbjct: 116 DSGLSNEELALADVLTGVPMVADYPSLNLGQ--SVMVYCYQ 154


>gi|146088269|ref|XP_001466033.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070134|emb|CAM68468.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 468

 Score = 43.5 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN--AAAVALYITQN 278
           L+LG E  GL  +  +      ++   G + +L  S   A A+A + T  
Sbjct: 137 LVLGME-NGLSQEVADACNLCTYIPQYGSVGSL--SMLSALAIAAHSTWR 183


>gi|301612742|ref|XP_002935875.1| PREDICTED: probable methyltransferase TARBP1-like [Xenopus
           (Silurana) tropicalis]
          Length = 1402

 Score = 43.5 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
            L++V   ++ P N+G + R+   F    ++    +  ++       +  A + +P I +
Sbjct: 739 SLIVVASLIDKPTNLGGLCRTCEIFGASALVVDSLHHVNDKQFQY-LSVSAEQWLPLIEV 797

Query: 193 SNLTDALQKMH 203
              T  L+ + 
Sbjct: 798 K-PTQLLEYLQ 807


>gi|291287143|ref|YP_003503959.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884303|gb|ADD68003.1| tRNA/rRNA methyltransferase (SpoU) [Denitrovibrio acetiphilus DSM
           12809]
          Length = 240

 Score = 43.5 bits (102), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 17/152 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L  +  P N+G I R+         ++     P       K A  A      +  +  
Sbjct: 6   VLLSRLEGPVNLGFIARAMANTGFSS-LSYTGTVPYNHEDALKFAVHAS---DILENAYH 61

Query: 196 TDALQKMHSWGFQTIGLSSDS------------KKPLEQEIKND-KIALILGAEGKGLRP 242
            +  +++ S     IG +  S            K  + + +    K+ L+ G E  GL  
Sbjct: 62  PETFEELISTSDVVIGFTPRSPFSTNNLPYEELKDFVSETVSTGLKVGLLFGNEASGLNN 121

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           K          L       ++N++ A  V+L+
Sbjct: 122 KELSACAHRVSLPTSADYISMNLAQAVLVSLW 153


>gi|311107734|ref|YP_003980587.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310762423|gb|ADP17872.1| RNA methyltransferase, TrmH family, group 1 family protein
           [Achromobacter xylosoxidans A8]
          Length = 263

 Score = 43.5 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 15/156 (9%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIR-IS 193
           ++ + + P N+G+  R+        ++  +   P  +        ASGAL+ +   R   
Sbjct: 11  IMVNPSHPGNVGSAARAIKTMGFSELVLVEPKFPDVTSQPEAVALASGALDVLENARIHD 70

Query: 194 NLTDALQ----------KMHSWGFQTIGL--SSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           +L +AL           ++   G     +  +++  +    E      A++LG E  GL 
Sbjct: 71  SLEEALAPVTMAFALTARVRDLGPPPCDIRQAAELARAHLGETAEGVAAVVLGTERAGLT 130

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                    + H+       +LNV+ A  +A +  +
Sbjct: 131 NAQIALCHRICHIPANPEYSSLNVAQALQLAAWELR 166


>gi|123966380|ref|YP_001011461.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9515]
 gi|123200746|gb|ABM72354.1| probable tRNA/rRNA methyltransferase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 236

 Score = 43.5 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 19/148 (12%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN-LTDALQKM 202
           P NIG+I R    F  + +          S    K A    ++I   R+ N +  A+   
Sbjct: 7   PINIGSIARLCSNFDVNELRIVSPKCDIFSLEAKKMALKGQKYINNCRVFNSIEQAIFDC 66

Query: 203 HSWGFQTIGLSS----------DSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQETA 248
                  +              ++ + + + I + K+    A++ G E +GL       A
Sbjct: 67  D----LVLATCGRIDLSNDIECENPEVISKWISSFKVINNLAILFGREDRGLTNSELLFA 122

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYIT 276
             + ++       +LN+S+A A+ LY  
Sbjct: 123 HKIFNIKTSQDYPSLNLSHAVAIILYEL 150


>gi|11498357|ref|NP_069585.1| hypothetical protein AF0751 [Archaeoglobus fulgidus DSM 4304]
 gi|7388425|sp|O29507|TRM56_ARCFU RecName: Full=tRNA ribose 2'-O-methyltransferase aTrm56
 gi|2649861|gb|AAB90489.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 168

 Score = 43.5 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 153 SAVAFSCDGIITT-KRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           +A AF   GI    +  S  ES        G    I  +    L      +        G
Sbjct: 25  TARAFGAKGIYFDTEDKSVFESVRDVVERWGGDFFIKAVSWKKLLREFDGLKVH-LTMYG 83

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA-A 270
           +    K  LE+  + DK+ +++GAE   + P+  E       +      +      AA A
Sbjct: 84  IPLPQK--LEEIKRADKVLVVVGAEK--VPPEVYELCDLNISIGTQPHSE-----VAALA 134

Query: 271 VAL 273
           V L
Sbjct: 135 VFL 137


>gi|117626762|ref|YP_860085.1| putative RNA methyltransferase [Escherichia coli APEC O1]
 gi|218561635|ref|YP_002394548.1| RNA methyltransferase [Escherichia coli S88]
 gi|331661038|ref|ZP_08361970.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           TA206]
 gi|115515886|gb|ABJ03961.1| putative rRNA methyltransferase [Escherichia coli APEC O1]
 gi|218368404|emb|CAR06224.1| rRNA methyltransferase [Escherichia coli S88]
 gi|222036146|emb|CAP78891.1| Uncharacterized tRNA/rRNA methyltransferase lasT [Escherichia coli
           LF82]
 gi|294490761|gb|ADE89517.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           IHE3034]
 gi|307629574|gb|ADN73878.1| putative RNA methyltransferase [Escherichia coli UM146]
 gi|312949034|gb|ADR29861.1| putative RNA methyltransferase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315284984|gb|EFU44429.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           110-3]
 gi|315298366|gb|EFU57621.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           16-3]
 gi|323950509|gb|EGB46387.1| RNA methyltransferase [Escherichia coli H252]
 gi|331052080|gb|EGI24119.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           TA206]
          Length = 228

 Score = 43.5 bits (102), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++L       NIGA  R+        +            V    A G+ + I  I++
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPVARWVAHGSGDIIDNIKV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKG 239
                  + +H   F     +    K            +  +K       AL+ G E  G
Sbjct: 61  --FKTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 119 LTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|288937243|ref|YP_003441302.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
 gi|288891952|gb|ADC60270.1| RNA methyltransferase, TrmH family, group 1 [Klebsiella variicola
           At-22]
          Length = 228

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 24/161 (14%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           +L ++L       N+GA  R+          I+ ++ +    +  +A  +   L+ +   
Sbjct: 2   RLTIILVAPARAENVGAAARAMKTMGFRDLRIVDSEAHLAPAARWVAHGSGDILDGV--- 58

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAE 236
             +        +H   F T+  ++ S+          ++              AL+ G E
Sbjct: 59  --TTYPTLAAALHDVDF-TVATTARSRARFHYYATPQQLLPLLEEKAQWMTHAALVFGRE 115

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             GL  +    A  +  + M     +LN+    +V +Y  Q
Sbjct: 116 DSGLSNEELALADVLTGVPMVADYPSLNLGQ--SVMVYCYQ 154


>gi|240949393|ref|ZP_04753734.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
 gi|240296142|gb|EER46798.1| tRNA/rRNA methyltransferase [Actinobacillus minor NM305]
          Length = 244

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL   +   NIG+  R+        +       P +   ++  A+GA + +      ++
Sbjct: 9   IVLIETSHSGNIGSTARAMKTMGLAQLCLVSPKQPIDEQAVS-LAAGAKDVLDNTQTFAS 67

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLE----------QEIKNDKIALILGAEGKGLR 241
             +A+          IG S+     +  L           Q     K+AL+ G E  GL 
Sbjct: 68  FEEAIADCQ----LVIGTSARLRHLQNTLIEPRKCGEIAVQHTLKGKVALVFGRERIGLT 123

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +         ++       +LN++ A  +A Y  +
Sbjct: 124 NEELLKCHYHLNIPTNPEYGSLNLAMAVQLACYEIR 159


>gi|161504866|ref|YP_001571978.1| putative RNA methyltransferase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866213|gb|ABX22836.1| hypothetical protein SARI_02991 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 228

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIAVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|310816156|ref|YP_003964120.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
           vulgare Y25]
 gi|308754891|gb|ADO42820.1| RNA methyltransferase, TrmH family, group 1 [Ketogulonicigenium
           vulgare Y25]
          Length = 245

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 17/164 (10%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
           A      +++        NIGA  R+   F  D +          +      ASGA   +
Sbjct: 4   ATPQPAFVLI--QPQMGENIGAAARAMWNFGLDRMRVIAPRDGWPNEKAVAMASGAGRLL 61

Query: 188 PYIR-ISNLTDALQKM--------HSWGFQTIGLSSDSK--KPLEQEIKNDKIALILGAE 236
              +  +   +A+              G     +S ++       +  + +K+A++ G E
Sbjct: 62  DEAQLYATTAEAIADCTFVYATTARPRGLTKPVMSPEAALRDAHARIARGEKVAIMFGPE 121

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
             G+       A  +  + +     +LN++    V L  Y  + 
Sbjct: 122 RAGMENDDIARANVIITVPVNPEFPSLNLAQC--VLLTAYEWRR 163


>gi|322499556|emb|CBZ34630.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 468

 Score = 43.5 bits (102), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN--AAAVALYITQN 278
           L+LG E  GL  +  +      ++   G + +L  S   A A+A + T  
Sbjct: 137 LVLGME-NGLSQEVADACNLCTYIPQYGSVGSL--SMLSALAIAAHSTWR 183


>gi|261867573|ref|YP_003255495.1| TrmH family RNA methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412905|gb|ACX82276.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 241

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A+A   + ++ +   + S S  +A  +          R+ +L ++L +    G + +  +
Sbjct: 48  ALAAGAEDVVKSAVTAESFSQAVADCSLVIGTS---ARLRHLQNSLIEPRECGKKAVAYA 104

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +           N K+A++ G E  GL  +          +       +LN++ A  +  
Sbjct: 105 T-----------NGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYTSLNLAMAVQLIA 153

Query: 274 YITQ 277
           Y  +
Sbjct: 154 YEVR 157


>gi|259416114|ref|ZP_05740034.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
 gi|259347553|gb|EEW59330.1| RNA methyltransferase TrmH, group 1 [Silicibacter sp. TrichCH4B]
          Length = 249

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 55/150 (36%), Gaps = 21/150 (14%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDAL----- 199
           NIG   R+   F  D +          +      ASGA   +   +++ +L +AL     
Sbjct: 20  NIGGAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRLLDEAQLAQDLPEALADCTY 79

Query: 200 --------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSM 251
                   +++    F   G    + + L Q    +K+A++ G E  GL       A ++
Sbjct: 80  VFATTARPRELTKPVFSPEGAMKKAAELLRQ---GEKVAVLFGPERAGLENDDIAKANAI 136

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQNH 279
             + +     +LN++    V L  Y  +  
Sbjct: 137 ITVPVNPEFASLNLAQC--VLLTAYEWRRQ 164


>gi|16767841|ref|NP_463456.1| RNA methyltransferase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16423167|gb|AAL23415.1| putative tRNA/tRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|312915692|dbj|BAJ39666.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 228

 Score = 43.5 bits (102), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
               L DA   +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASHAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|149926793|ref|ZP_01915052.1| probable methyltransferase [Limnobacter sp. MED105]
 gi|149824345|gb|EDM83563.1| probable methyltransferase [Limnobacter sp. MED105]
          Length = 269

 Score = 43.5 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 15/160 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIPYIRIS 193
           +VL   + P N+G++ R+      + +   +  +    +       ASGA + +   RI 
Sbjct: 12  IVLVKTSHPGNVGSVARAMKTMGLNDLRLVEPKTKDICSTEEAISLASGASDVLEQARIY 71

Query: 194 N-LTDALQ----------KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRP 242
           N L +AL           +M   G         +++ L         A + GAE  GL  
Sbjct: 72  NTLPEALADRSVAFALSARMRDLGPSLQSPQEAAREALNLTQSGIGAAFVFGAERTGLSN 131

Query: 243 KTQETATSMAHLHMPGII-KALNVSNAAAVALYITQNHFA 281
                      +     +  +LN+S A  +  Y  +  +A
Sbjct: 132 DELLVCNRQVTIA-ANPVYSSLNLSQAVQIVAYALRTEWA 170


>gi|39936894|ref|NP_949170.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|39650751|emb|CAE29274.1| tRNA/rRNA methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 404

 Score = 43.5 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 17/159 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           +++L       NIG   R+   F    +   K      +    +SA+GA   +       
Sbjct: 24  VVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAAQRSAAGADHILNAVELFD 83

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRP 242
           ++ +A++   +  F T   + D  KP+            +        ++ G E  GL  
Sbjct: 84  SVAEAVKDC-TLLFATTARAHDQAKPVRGPEAAAQEIVVETASGGTTGIMFGRERHGLEN 142

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
                A  +    +     +LN++ A  V L  Y    H
Sbjct: 143 DEVALANRIVTFPVNPAFASLNLAQA--VLLMGYEWFKH 179


>gi|46579249|ref|YP_010057.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603188|ref|YP_967588.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris DP4]
 gi|85543858|sp|Q72DU3|TRMD_DESVH RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName:
           Full=M1G-methyltransferase; AltName: Full=tRNA [GM37]
           methyltransferase
 gi|46448663|gb|AAS95316.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563417|gb|ABM29161.1| tRNA (Guanine37-N(1)-) methyltransferase [Desulfovibrio vulgaris
           DP4]
 gi|311233078|gb|ADP85932.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris RCH1]
          Length = 425

 Score = 43.5 bits (102), Expect = 0.035,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 44/259 (16%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           H ++PE+   Y  H V   L +           K    RL   +  P   P   +    +
Sbjct: 176 HYTRPED---YAGHVVPEVLRSGDHGRIAAW-RKECSLRL-TLSQRPDILPEAQLDEADM 230

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMV--LDHVNDPHNIGAILRSAVAFSC 159
           D + G      G  L  A +  P +   +NS    +  LD ++D      I RS+  +  
Sbjct: 231 DFLRGLSRNRPGRNLYCALVHYPVVLKEKNSGATSLTNLD-IHD------IGRSSCTYGL 283

Query: 160 DGII--------------TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
            G                  + ++    +      + AL  I    + ++  A++ +   
Sbjct: 284 GGFYVTTPLEDQRRLLDTLLRHWTLGPGSRSNPDRAEALGRIK--GVDDVRAAIEDIARR 341

Query: 206 GFQT---IGLSSDSK-----KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMP 257
             Q    +G S+          +   ++   + L+ G  G GL P+  E   ++    + 
Sbjct: 342 TGQVPYVVGTSAKGAGNATPASVRAMLEERPVLLVFGT-GHGLAPEVLEGCDAILR-PLR 399

Query: 258 GIIKALN-VSN--AAAVAL 273
             +   N +S   AAA+ +
Sbjct: 400 -WMDGYNHLSVRAAAAIIM 417


>gi|209748728|gb|ACI72671.1| hypothetical protein ECs5361 [Escherichia coli]
 gi|320643913|gb|EFX13033.1| putative RNA methyltransferase [Escherichia coli O157:H- str.
           493-89]
          Length = 228

 Score = 43.5 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQVHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|294637706|ref|ZP_06715983.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
           tarda ATCC 23685]
 gi|291089136|gb|EFE21697.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Edwardsiella
           tarda ATCC 23685]
          Length = 245

 Score = 43.5 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 22/165 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   N+G+  R+        +         +S  +A +A  +        + + 
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVRPDSQAIALAAGASDVIGNATIVDSF 66

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            +A+          +G S+ S+                 QE ++  +A++ G E  GL  
Sbjct: 67  DEAIAGCS----LVVGTSARSRSLPWPMLEPRECGQRAAQESEHAPVAIVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-----NHFAK 282
              +       +       +LN++ A  +  Y  +        AK
Sbjct: 123 DELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAK 167


>gi|172040099|ref|YP_001799813.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum
           DSM 7109]
 gi|171851403|emb|CAQ04379.1| putative rRNA methylase, SpoU class [Corynebacterium urealyticum
           DSM 7109]
          Length = 195

 Score = 43.5 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 17/168 (10%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
           A   +  L+ +          ++ D    P N G  +R          +        E  
Sbjct: 11  AAGRSSSLTTSPRPAAEPPFHILFDQPQIPPNTGNAIRMCAGTGATLHLAGPLGFNFEEK 70

Query: 175 VLAKSASGALEHIPYIRISNLTDALQKMHSWGF-------------QTIGLSSDSKKPLE 221
            + ++     +        +   A   +   G              +    ++ +K    
Sbjct: 71  HVRRAGLDYHDLANVQLHEDFEAAAAHL--TGLSRQQAAAGAQPQTRIFAFTTHAKTWFT 128

Query: 222 QEIKNDKIALILGAEGKGLRPKTQE--TATSMAHLHMPGIIKALNVSN 267
                    L+ G E  GL  +T      T+   + M    +++N+SN
Sbjct: 129 DVDFRRGDVLLFGPEPTGLDEETLADPRITAQLRIPMLPARRSMNLSN 176


>gi|255065931|ref|ZP_05317786.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
           29256]
 gi|255049842|gb|EET45306.1| RNA methyltransferase, TrmH family, group 1 [Neisseria sicca ATCC
           29256]
          Length = 271

 Score = 43.5 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQ 277
           L+   + +K+AL+ G E  GL  +  +    +  +   G     +LN++ A  V  Y   
Sbjct: 131 LQAAQRGEKVALVFGNETFGLSIEEVQACNRLMTI--NGNPDYFSLNLAQAVQVVCYEIF 188

Query: 278 NH 279
           + 
Sbjct: 189 SQ 190


>gi|291336626|gb|ADD96172.1| hypothetical protein [uncultured organism MedDCM-OCT-S05-C185]
          Length = 103

 Score = 43.5 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 139 DHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA 198
           + ++   N GA+ R+A AF  D I T        S     ++S A ++ P+    N  + 
Sbjct: 10  EGISKQSNFGAVARTANAFGADFIFTVSAAIDLNSVNSVDTSS-AYKNTPFYSFDNPENL 68

Query: 199 L--QKMHSWGFQT 209
           L  ++    G + 
Sbjct: 69  LLPKECKLVGVEI 81


>gi|253690031|ref|YP_003019221.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756609|gb|ACT14685.1| RNA methyltransferase, TrmH family, group 1 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 228

 Score = 43.5 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHS 204
           N+GA  R+        +      +  +       A G+ + +  +++ S L DAL  +  
Sbjct: 15  NVGAAARAMKTMGFSSLRIVG-STVYQEPAARWVAHGSGDILDNVQVFSTLADALADV-- 71

Query: 205 WGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKGLRPKTQETATSM 251
             F     +    K            +  +K+      AL+ G E  GL  +  E A  +
Sbjct: 72  -DFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEELELADVL 130

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M     +LN+  A  V +Y  Q
Sbjct: 131 TGVPMKADYPSLNLGQA--VMVYCYQ 154


>gi|94986089|ref|YP_605453.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
           11300]
 gi|94556370|gb|ABF46284.1| RNA methyltransferase TrmH, group 1 [Deinococcus geothermalis DSM
           11300]
          Length = 254

 Score = 43.5 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 14/152 (9%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +VL     P NIGA  R+ +      +           +     A  A + +   RI 
Sbjct: 3   LAVVLVSPKTPGNIGAAARAMLNMGASDLRIVAPRCDPLDSQAVAMAVHAADLLRSARIY 62

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI----------ALILGAEGKGLRPK 243
                 + +        G ++  +  L       ++          AL+ G E  GL   
Sbjct: 63  PTLR--EALADRDLSV-GTTARLRADLPPPRHPAQVRPLVRAASAPALVFGPEETGLVNS 119

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             E       +       +LN++ A  +  Y 
Sbjct: 120 DLEQCQVTVRVPTAEYA-SLNLAQAVLLVCYE 150


>gi|26111729|gb|AAN83910.1|AE016772_88 Hypothetical tRNA/rRNA methyltransferase lasT [Escherichia coli
           CFT073]
          Length = 235

 Score = 43.1 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 18/160 (11%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
           N ++ ++L       NIGA  R+        +                 A G+ + I  I
Sbjct: 7   NMRITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPAARWVAHGSGDIIDNI 65

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
           ++       + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 66  KV--FKTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 123

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 124 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 161


>gi|30065639|ref|NP_839810.1| putative RNA methyltransferase [Shigella flexneri 2a str. 2457T]
 gi|30043903|gb|AAP19622.1| hypothetical protein S4706 [Shigella flexneri 2a str. 2457T]
          Length = 228

 Score = 43.1 bits (101), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            GL  +    A  +  + M     +LN+  A
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA 147


>gi|240113067|ref|ZP_04727557.1| putative methylase family protein [Neisseria gonorrhoeae MS11]
 gi|240128370|ref|ZP_04741031.1| putative methylase family protein [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268599153|ref|ZP_06133320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268686768|ref|ZP_06153630.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
 gi|268583284|gb|EEZ47960.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268627052|gb|EEZ59452.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
          Length = 271

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 220 LEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYIT 276
           L+   + +K+AL+ G E  GL   + +     +  +   G     +LN++ A  V  Y  
Sbjct: 131 LQAANRGEKVALVFGNETFGLSIEEVRA-CNRLMTI--NGNPDYFSLNLAQAVQVVCYEI 187

Query: 277 QNH 279
            + 
Sbjct: 188 FSQ 190


>gi|59801097|ref|YP_207809.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
 gi|194098799|ref|YP_002001862.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
 gi|239999090|ref|ZP_04719014.1| putative methylase family protein [Neisseria gonorrhoeae 35/02]
 gi|240014003|ref|ZP_04720916.1| putative methylase family protein [Neisseria gonorrhoeae DGI18]
 gi|240016444|ref|ZP_04722984.1| putative methylase family protein [Neisseria gonorrhoeae FA6140]
 gi|240080563|ref|ZP_04725106.1| putative methylase family protein [Neisseria gonorrhoeae FA19]
 gi|240115823|ref|ZP_04729885.1| putative methylase family protein [Neisseria gonorrhoeae PID18]
 gi|240118121|ref|ZP_04732183.1| putative methylase family protein [Neisseria gonorrhoeae PID1]
 gi|240121569|ref|ZP_04734531.1| putative methylase family protein [Neisseria gonorrhoeae PID24-1]
 gi|240123670|ref|ZP_04736626.1| putative methylase family protein [Neisseria gonorrhoeae PID332]
 gi|254493868|ref|ZP_05107039.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|260440361|ref|ZP_05794177.1| putative methylase family protein [Neisseria gonorrhoeae DGI2]
 gi|268594928|ref|ZP_06129095.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268596693|ref|ZP_06130860.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268601499|ref|ZP_06135666.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268603837|ref|ZP_06138004.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682301|ref|ZP_06149163.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|291043656|ref|ZP_06569372.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398959|ref|ZP_06643124.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|59717992|gb|AAW89397.1| putative methylase family protein [Neisseria gonorrhoeae FA 1090]
 gi|193934089|gb|ACF29913.1| putative methylase family protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512908|gb|EEH62253.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548317|gb|EEZ43735.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268550481|gb|EEZ45500.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268585630|gb|EEZ50306.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268587968|gb|EEZ52644.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622585|gb|EEZ54985.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae PID332]
 gi|291012119|gb|EFE04108.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291610373|gb|EFF39483.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164381|gb|ADV07922.1| putative methylase family protein [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 271

 Score = 43.1 bits (101), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 220 LEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYIT 276
           L+   + +K+AL+ G E  GL   + +     +  +   G     +LN++ A  V  Y  
Sbjct: 131 LQAANRGEKVALVFGNETFGLSIEEVRA-CNRLMTI--NGNPDYFSLNLAQAVQVVCYEI 187

Query: 277 QNH 279
            + 
Sbjct: 188 FSQ 190


>gi|240125860|ref|ZP_04738746.1| putative methylase family protein [Neisseria gonorrhoeae SK-92-679]
 gi|268684458|ref|ZP_06151320.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
 gi|268624742|gb|EEZ57142.1| tRNA/rRNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
          Length = 271

 Score = 43.1 bits (101), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 220 LEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYIT 276
           L+   + +K+AL+ G E  GL   + +     +  +   G     +LN++ A  V  Y  
Sbjct: 131 LQAANRGEKVALVFGNETFGLSIEEVRA-CNRLMTI--NGNPDYFSLNLAQAVQVVCYEI 187

Query: 277 QNH 279
            + 
Sbjct: 188 FSQ 190


>gi|153005807|ref|YP_001380132.1| tRNA/rRNA methyltransferase SpoU [Anaeromyxobacter sp. Fw109-5]
 gi|152029380|gb|ABS27148.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. Fw109-5]
          Length = 239

 Score = 43.1 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 20/157 (12%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFS-CDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
             + +VL    +P N+GA+ R+   F   D  I          A   + A  A      +
Sbjct: 9   PPVRIVLLRPRNPENLGAVARAMKNFGLADWAIAELGTHD--FATARRVAVHAE---DLL 63

Query: 191 RISNLTDALQKMHSWGFQTIGLSSD---SKKPLE---------QEIKNDKIALILGAEGK 238
               L   L +  +     +G SS     K+ L          +     + AL+ G E  
Sbjct: 64  DRPRLVRTLDEAVADCAWVVGTSSRRVRGKRRLSPAEVAREAMERAPAGRTALVFGDERS 123

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           GL          ++ +       ++N++ A  V LY 
Sbjct: 124 GLANDEVLRCHDLSAIPTDEAQPSVNLAQA--VLLYA 158


>gi|159473264|ref|XP_001694759.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158276571|gb|EDP02343.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 324

 Score = 43.1 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 34/165 (20%)

Query: 146 NIGAILRSAVAFSCDGIIT----TKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQK 201
           NIGA+ R+A  F C  +          +   +    K A G       + +  L  AL  
Sbjct: 38  NIGAVARAAANFECLNLYIVAPRCDGAAAGWTGEARKVACGDSVLDRAVVVDTLEQALAD 97

Query: 202 MHSW-GF-QTIGLSSDSKKPLEQEIKNDKIA-----------------------LILGAE 236
             S  GF +  G +  +   L   +     A                       L+ G E
Sbjct: 98  TSSSIGFTRRTGAARRTHASLGHLLAEFPFALPLQPPPVAVPTSAAAAGPCATALVFGRE 157

Query: 237 GKGLRPKTQETATSMAHLHMPGIIK-ALNVSNA-AAVA--LYITQ 277
             GL        +  + +   G ++ ++N+S+A AAV   L+  +
Sbjct: 158 ESGLTEAELRLCSYASAIP-TGRVQPSMNLSHAVAAVLAELFSRR 201


>gi|145634624|ref|ZP_01790333.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittAA]
 gi|145268169|gb|EDK08164.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittAA]
          Length = 241

 Score = 43.1 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   NIG+  R+        +      S  E +     ++GA   +   R+  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNARVVDS 64

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ--------EIKNDKIALILGAEGKGLRPK 243
             +A+          IG S+     +  L +             KIA++ G E  GL  +
Sbjct: 65  FDEAVDDCS----LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 157


>gi|301169082|emb|CBW28679.1| predicted methyltransferase [Haemophilus influenzae 10810]
          Length = 241

 Score = 43.1 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   NIG+  R+        +      S  E +     ++GA   +   R+  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNARVVDS 64

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ--------EIKNDKIALILGAEGKGLRPK 243
             +A+          IG S+     +  L +             KIA++ G E  GL  +
Sbjct: 65  FDEAVDDCS----LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 157


>gi|68248983|ref|YP_248095.1| tRNA/rRNA methyltransferase [Haemophilus influenzae 86-028NP]
 gi|145631835|ref|ZP_01787594.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|145632627|ref|ZP_01788361.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           3655]
 gi|229844532|ref|ZP_04464672.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|229846467|ref|ZP_04466575.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|68057182|gb|AAX87435.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|144982554|gb|EDJ90108.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|144986822|gb|EDJ93374.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           3655]
 gi|229810560|gb|EEP46278.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|229812781|gb|EEP48470.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|309972461|gb|ADO95662.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2846]
          Length = 241

 Score = 43.1 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   NIG+  R+        +      S  E +     ++GA   +   R+  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNARVVDS 64

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ--------EIKNDKIALILGAEGKGLRPK 243
             +A+          IG S+     +  L +             KIA++ G E  GL  +
Sbjct: 65  FDEAVDDCS----LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 157


>gi|255311931|pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein
           From Neisseria Gonorrhoeae
          Length = 223

 Score = 43.1 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQ 277
           L+   + +K+AL+ G E  GL  +       +  +   G     +LN++ A  V  Y   
Sbjct: 134 LQAANRGEKVALVFGNETFGLSIEEVRACNRLXTI--NGNPDYFSLNLAQAVQVVCYEIF 191

Query: 278 NH 279
           + 
Sbjct: 192 SQ 193


>gi|148827519|ref|YP_001292272.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
 gi|260580557|ref|ZP_05848385.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|260582528|ref|ZP_05850318.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
 gi|319775753|ref|YP_004138241.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3047]
 gi|319896709|ref|YP_004134902.1| tRNA/rRNA methyltransferase [Haemophilus influenzae F3031]
 gi|329123594|ref|ZP_08252154.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           aegyptius ATCC 11116]
 gi|20178339|sp|P44676|Y380_HAEIN RecName: Full=Uncharacterized tRNA/rRNA methyltransferase HI_0380
 gi|5853047|gb|AAD54289.1| HI0380 [Haemophilus influenzae]
 gi|148718761|gb|ABQ99888.1| hypothetical protein CGSHiGG_04710 [Haemophilus influenzae PittGG]
 gi|260092899|gb|EEW76834.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|260094339|gb|EEW78237.1| tRNA/rRNA methyltransferase [Haemophilus influenzae NT127]
 gi|317432211|emb|CBY80563.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3031]
 gi|317450344|emb|CBY86560.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           F3047]
 gi|327469793|gb|EGF15258.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           aegyptius ATCC 11116]
          Length = 241

 Score = 43.1 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   NIG+  R+        +      S  E +     ++GA   +   R+  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNARVVDS 64

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ--------EIKNDKIALILGAEGKGLRPK 243
             +A+          IG S+     +  L +             KIA++ G E  GL  +
Sbjct: 65  FDEAVDDCS----LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 157


>gi|309806142|ref|ZP_07700161.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
 gi|308167497|gb|EFO69657.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           03V1-b]
          Length = 115

 Score = 43.1 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 12/115 (10%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 10  NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKL-KLT 66

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           N      +  V     D++   E   Q + +   P+  P          L+ L++
Sbjct: 67  NKIFDKSIILVNQAICDQLSDTE-NSQDIFM-VLPINQP-------HSFLLSLEN 112


>gi|317404811|gb|EFV85188.1| methyltransferase [Achromobacter xylosoxidans C54]
          Length = 263

 Score = 43.1 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 15/156 (9%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRISN 194
           ++ + + P N+G+  R+        ++         +        ASGAL+ +   RI +
Sbjct: 11  IMVNPSHPGNVGSAARAIKTMGFSELVLVGPKFADVTSQPEAVALASGALDVLENARIYD 70

Query: 195 LTD------ALQKMHSWGFQTIG-------LSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             +       L    +   + +G        ++D       E      A++LG E  GL 
Sbjct: 71  TLEEALAPVTLAFALTARVRDLGPPPCDIRQAADLACAHLAETAEGCAAIVLGTERAGLT 130

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
                    + H+       +LNV+ A  +A +  +
Sbjct: 131 NAQIGLCHRICHIPANPEYSSLNVAQALQLAAWELR 166


>gi|218960366|ref|YP_001740141.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729023|emb|CAO79934.1| putative tRNA/rRNA methyltransferase (yfhQ) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 278

 Score = 43.1 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 52/144 (36%), Gaps = 20/144 (13%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+GAI R    F    +    +        LA  +   LE++     S L DA+  +  
Sbjct: 21  GNVGAIARIMHNFCFSDLRIVGKVPEKNDFYLAMHSEEILENVNIY--STLEDAINGLD- 77

Query: 205 WGFQTIGLS--SDSKKPLE----------QEIKNDKIALILGAEGKGLRPKTQETATSMA 252
              + I  S      KP++            + +  I L+ G E  GL     E      
Sbjct: 78  ---RVIAFSRRLGKNKPVDFTPGQMAKYVHSLPDSNIGLVFGRETYGLTDSEAELCPLRC 134

Query: 253 HLHMPG-IIKALNVSNAAAVALYI 275
           H  M      +LN++ A A+AL+ 
Sbjct: 135 HF-MANPSFPSLNLAQAVALALWE 157


>gi|238910757|ref|ZP_04654594.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 228

 Score = 43.1 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 54/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L DA   +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADA---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|119713414|gb|ABL97476.1| RNA methyltransferase [uncultured marine bacterium HF130_81H07]
          Length = 243

 Score = 43.1 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 27/157 (17%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIP 188
           N+ +  +L   +   NIGA  R+         GI+  ++    E+   AKSA   L++  
Sbjct: 6   NNDIEFILVEPSHSGNIGACARAIKNMGFKKLGIVKPRKTITKEAYYRAKSAKDILDNAL 65

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSK---------KPLEQEIKND------KIALIL 233
                +   A++  +      +  S+  +           + +EIK++      K A+I 
Sbjct: 66  IY--ESFDQAIEDKN----LILATSARERTIPWPTFFIDDVSEEIKSELQSAKNKTAVIF 119

Query: 234 GAEGKGLRPKTQETATSMAHLHMPGIIK--ALNVSNA 268
           G E  GL  +  +       +     ++  +LN+S+A
Sbjct: 120 GREDNGLSNEELQKCHIHLVIPTS--VEYPSLNLSHA 154


>gi|145628738|ref|ZP_01784538.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|144979208|gb|EDJ88894.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.1-21]
          Length = 184

 Score = 43.1 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   NIG+  R+        +      S  E +     ++GA   +   R+  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNARVVDS 64

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ--------EIKNDKIALILGAEGKGLRPK 243
             +A+          IG S+     +  L +             KIA++ G E  GL  +
Sbjct: 65  FDEAVDDCS----LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 157


>gi|154253023|ref|YP_001413847.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
 gi|154156973|gb|ABS64190.1| RNA methyltransferase, TrmH family, group 1 [Parvibaculum
           lavamentivorans DS-1]
          Length = 262

 Score = 43.1 bits (101), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 19/155 (12%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           +A+R +   ++L       NIG   R+ + F    +   +      +     +ASGA E 
Sbjct: 11  EALREAGPAVILVAPQLGENIGTAARAMLNFGLTDLRLVRPRDGWPNERARAAASGADEV 70

Query: 187 IPYIR-ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--------------L 231
           I   R  +   +A+  +       I  ++ S+  ++  +  +  A              L
Sbjct: 71  IDGARLFATTAEAIADLD----YVIATTARSRDMVKPILTPETAATQMRVAFGAGGRAGL 126

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           + G E  GL       A ++  + +     +LN++
Sbjct: 127 LFGPERTGLENDDIVLADALMMVPVNPAFASLNLA 161


>gi|303326590|ref|ZP_07357033.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           3_1_syn3]
 gi|302864506|gb|EFL87437.1| RNA methyltransferase, TrmH family, group 3 [Desulfovibrio sp.
           3_1_syn3]
          Length = 111

 Score = 43.1 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 13/99 (13%)

Query: 53  GVHTVSAALNNPSRKIFQLLATKNA---LARLDWDANLPHPFPVKTVPPQTIDKIV---- 105
           G+  V   L +  +++  +   K      AR   +    +      V    +D++     
Sbjct: 13  GLKPVLELLASEPQRVDLVFCKKGLHGPEAREVQNLCRQNGVRFSLVDGAALDRLCRGPR 72

Query: 106 -GKEAV-HQGLALETAPL----LSPTLDAVRNSQLLMVL 138
            G++AV HQG+    A      L   L AV ++ L ++L
Sbjct: 73  QGRDAVAHQGVVARLAVTGFCGLEELLAAVPDAPLPLLL 111


>gi|167949869|ref|ZP_02536943.1| hypothetical protein Epers_26767 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 120

 Score = 43.1 bits (101), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 47  ENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPH--PFPVKTVPPQTIDKI 104
           E   + G+H V  AL +       LL ++   AR+    NL        + V  + +D++
Sbjct: 3   ETQLIIGLHAVRTALKHGDAVTEILLESRRRDARIKEVLNLARQAGLKPRQVEGEELDRL 62

Query: 105 V 105
            
Sbjct: 63  A 63


>gi|314933133|ref|ZP_07840498.1| 2-nitropropane dioxygenase (nitroalkane oxidase) [Staphylococcus
           caprae C87]
 gi|313653283|gb|EFS17040.1| 2-nitropropane dioxygenase (nitroalkane oxidase) [Staphylococcus
           caprae C87]
          Length = 355

 Score = 42.7 bits (100), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 24/102 (23%)

Query: 185 EHIPYIRIS---NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA--LIL--GAEG 237
            H+P    +      + +QK+       +G +      +++ I+N++    +I+  G+E 
Sbjct: 124 YHVPVCCFTFGIPDEETIQKLKEANVTLVGTA----TSVDEAIENERSGMDIIVAQGSEA 179

Query: 238 KGLRPKTQETATSMAHLHMPGIIKAL------NVS---NAAA 270
            G R      +       M G + +L      NVS    AA 
Sbjct: 180 GGHRGSFLNHSDEE---PMIGTM-SLVPQVVDNVSIPVVAAG 217


>gi|91225152|ref|ZP_01260374.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
 gi|91190095|gb|EAS76366.1| RNA methyltransferase, TrmH family protein [Vibrio alginolyticus
           12G01]
          Length = 215

 Score = 42.7 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +AL+ G E  GL  +  +       +       +LN++ A
Sbjct: 84  PVALVFGRERTGLTNEELQKCHYHVCIPANPEYSSLNLAMA 124


>gi|145636352|ref|ZP_01792021.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittHH]
 gi|145270517|gb|EDK10451.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittHH]
          Length = 241

 Score = 42.7 bits (100), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   NIG+  R+        +      S  E +     ++GA   +   R+  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNARVVDS 64

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ--------EIKNDKIALILGAEGKGLRPK 243
             +A+          IG S+     +  L +             KIA++ G E  GL  +
Sbjct: 65  FDEAVDDCS----LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 157


>gi|290476021|ref|YP_003468918.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           bovienii SS-2004]
 gi|289175351|emb|CBJ82154.1| putative methyl transferase in Fe-S cluster assembly [Xenorhabdus
           bovienii SS-2004]
          Length = 244

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L   +   N+G+  R+        +         +S  +A SA  +      I  + +
Sbjct: 7   IILVETSHTGNMGSAARAMKTMGLTNLYLVNPLVQPDSHSIALSAGAS----DVIGNATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLE-------------QEIKNDKIALILGAEGKGLRP 242
            + L +  +     IG S+ S+                 +   +  +A++ G E  GL  
Sbjct: 63  VNTLDEALAGCELVIGTSARSRTLSWPMVEPRECGERCIKAAGHSPVAVVFGRERVGLTN 122

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
           +  +      ++       +LN++ A
Sbjct: 123 EELQKCNYHLYIPTNPEYGSLNLAMA 148


>gi|260433569|ref|ZP_05787540.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417397|gb|EEX10656.1| RNA methyltransferase, TrmH family, group 1 [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 247

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           NIGA  R+   F  D +          +      +SGA   +   +   +L  AL    +
Sbjct: 20  NIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRLLDEAQLFDDLAGALGD-RT 78

Query: 205 WGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + F T        KP+            +    +K+A++ G E  GL  +    A ++  
Sbjct: 79  YVFATTARQRGLTKPVYSPERAMQIAAQKVAAGEKVAVLFGPERAGLENEDIAKANAIIS 138

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           + +     +LN+     V L  Y     
Sbjct: 139 VPVNPEYASLNLGQC--VLLTAYEWMRQ 164


>gi|145638711|ref|ZP_01794320.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittII]
 gi|145272306|gb|EDK12214.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           PittII]
 gi|309750201|gb|ADO80185.1| tRNA mC32/mU32 methyltransferase, SAM-dependent [Haemophilus
           influenzae R2866]
          Length = 241

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   NIG+  R+        +      S  E +     ++GA   +   R+  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNARVVDS 64

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ--------EIKNDKIALILGAEGKGLRPK 243
             +A+          IG S+     +  L +             KIA++ G E  GL  +
Sbjct: 65  FDEAVDDCS----LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 157


>gi|330830082|ref|YP_004393034.1| TrmH family RNA methyltransferase [Aeromonas veronii B565]
 gi|328805218|gb|AEB50417.1| RNA methyltransferase, TrmH family [Aeromonas veronii B565]
          Length = 216

 Score = 42.7 bits (100), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 18/117 (15%)

Query: 180 ASGALEHIPYIR-ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND----------- 227
           A+GA + +   R +  L DA+      G   IG S+ S+      +              
Sbjct: 26  AAGASDVLANARIVPTLDDAIA---DCGL-VIGTSARSRTLSWPMLDPREAGEKSVVEGM 81

Query: 228 --KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              +AL+ G E  GL     +       +       +LN++ A     Y  +  + +
Sbjct: 82  QHPVALVFGRERTGLTNDELQKCHYHVAIPANPDYSSLNLAMAVQTLCYEVRMRWLQ 138


>gi|313668483|ref|YP_004048767.1| SpoU methylase family protein [Neisseria lactamica ST-640]
 gi|313005945|emb|CBN87402.1| SpoU methylase family protein [Neisseria lactamica 020-06]
          Length = 271

 Score = 42.7 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 57/206 (27%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPS--- 171
                P L   LD +R     +VL   + P NIG+  R   A    G+      +P+   
Sbjct: 1   MASEKPALPAYLDNIR-----IVLTRTSHPANIGSAAR---AMKTMGLHRLTIVAPNLMA 52

Query: 172 ----ESAVLAKSASGALEHIP---YIRISNLTDALQKMHSWGFQTIGLSSDSK------- 217
               E+  +          +P   +I  S   D L+        TI  S D         
Sbjct: 53  TPMTENPPVFNPDDVQSFALPEESFILASGAADVLEN------ATIAASLDEALADTTIA 106

Query: 218 ----------------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                                 + L+   + +++AL+ G E  GL  +  +    +  + 
Sbjct: 107 CALTSRRREITAPLQTPRDLVPELLQAAQRGEQVALVFGNETFGLSIEEAQACNRLMTI- 165

Query: 256 MPGIIK--ALNVSNAAAVALYITQNH 279
             G     +LN++ A  V  Y   + 
Sbjct: 166 -NGNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|269140161|ref|YP_003296862.1| RNA methyltransferase [Edwardsiella tarda EIB202]
 gi|267985822|gb|ACY85651.1| RNA methyltransferase [Edwardsiella tarda EIB202]
 gi|304559994|gb|ADM42658.1| tRNA:Cm32/Um32 methyltransferase [Edwardsiella tarda FL6-60]
          Length = 245

 Score = 42.7 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 24/166 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +VL   +   N+G+  R+        +         +S  +A  ++GA + I     + +
Sbjct: 7   IVLVETSHTGNMGSTARAMKTMGLTNLYLVNPLVRPDSQAIA-LSAGASDVIGNATIVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLR 241
             DA+          +G S+ S+      ++                +A++ G E  GL 
Sbjct: 66  FDDAIAGCS----LVVGTSARSRSLPWPMLEPRECGQRSAMESEHAPVAIVFGRERVGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-----NHFAK 282
               +       +       +LN++ A  +  Y  +        AK
Sbjct: 122 NDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAK 167


>gi|194443042|ref|YP_002043840.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401705|gb|ACF61927.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 228

 Score = 42.7 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ +VL       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPATRWVAHGSGDIIDNIEVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--KI-----------ALILGAEG 237
               L D    +H   F     +    K        +   +           AL+ G E 
Sbjct: 62  HT--LADV---LHDVDFTVATTARSRAKFHYYASPAELVPLLQEKSRWMRHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL       A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNDELALADVLTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|329296468|ref|ZP_08253804.1| putative rRNA methylase [Plautia stali symbiont]
          Length = 142

 Score = 42.7 bits (100), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 22/150 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          +      P   A   K      E+    + ++ 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFQLHLIE----PLGFAWDDKRGLDYHEYTALKKHASY 59

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET--ATS 250
              L        +   T G  + S    +         L+ G E +GL P+      A  
Sbjct: 60  AAFLAAEAPQRLFALTTKGTPAHSAVSYQPGDY-----LLFGPESRGLPPEILNALPAEQ 114

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                      ++N+SNA +V +Y      
Sbjct: 115 KIR--------SMNLSNAVSVVVYEAWRQL 136


>gi|227327991|ref|ZP_03832015.1| putative RNA methyltransferase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 228

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 20/146 (13%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKMHS 204
           N+GA  R+        +      +  +       A G+ + +      S L +AL  +  
Sbjct: 15  NVGAAARAMKTMGFSSLRIVG-STVHQEPAARWVAHGSGDILDNVQMFSTLAEALADV-- 71

Query: 205 WGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKGLRPKTQETATSM 251
             F     +    K            +  +K+      AL+ G E  GL  +  E A  +
Sbjct: 72  -DFTVATTARSRAKYHYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNEELELADVL 130

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
             + M     +LN+  A  V +Y  Q
Sbjct: 131 TGVPMKADYPSLNLGQA--VMVYCYQ 154


>gi|254475698|ref|ZP_05089084.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
 gi|214029941|gb|EEB70776.1| tRNA/rRNA methyltransferase [Ruegeria sp. R11]
          Length = 248

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKMHS 204
           NIGA  R+   F  D +          +      ASGA   +   ++S  L D+L+    
Sbjct: 20  NIGAAARAMWNFGLDRMRIVAPRDGWPNQKAVAMASGAGRLLDEAQLSATLADSLEDC-D 78

Query: 205 WGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + F T     +  KP+            +     K+A++ G E  GL  +    A ++  
Sbjct: 79  FVFATTARPRELTKPVYSPEAAMKLAAEKTAAGQKVAVMFGPERAGLENEDVARANAIIT 138

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQNH 279
           + +     +LN+     V L  Y  +  
Sbjct: 139 VPVNPEFASLNLGQC--VLLTAYEWRRQ 164


>gi|298707095|emb|CBJ29887.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 356

 Score = 42.7 bits (100), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL + +  +N+G ++R   AF+ + +I    +           A G+ +H+ Y    + 
Sbjct: 17  LVLANPSSKNNLGTLIRCGAAFAVEEVIVVGAF-----KWSTHGAHGSHKHLRYRCFDDW 71

Query: 196 TDALQKMHS 204
             A   +  
Sbjct: 72  ETAATFLRD 80


>gi|88812653|ref|ZP_01127900.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrococcus mobilis Nb-231]
 gi|88790069|gb|EAR21189.1| rRNA_methyl_1: RNA methyltransferase, TrmHfamily, group 1
           [Nitrococcus mobilis Nb-231]
          Length = 243

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 15/153 (9%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA--VLAKSASGALEHIPYIRIS 193
           +VL     P NIG+  R   A    G+      +P          +A  A + +    + 
Sbjct: 8   IVLLGTTHPGNIGSAAR---AMKTMGLSRLHLVAPLYYPDPRAQATAGHAADVLGAAHVH 64

Query: 194 -NLTDALQK------MHSWGFQTIGLSSD---SKKPLEQEIKNDKIALILGAEGKGLRPK 243
            +L  AL        + +   +    + D       + +  +   +AL+ G E  GL   
Sbjct: 65  ADLAAALHDTRLVLGLTARPRRLAAEALDARCGALQIAEASRAYPVALLFGREDSGLTNA 124

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
                  + H+        LN++ A  +  Y  
Sbjct: 125 QLSYCHGVVHIPANPAYPVLNLAAAVQIVCYEL 157


>gi|191173157|ref|ZP_03034689.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|218692792|ref|YP_002401004.1| putative RNA methyltransferase [Escherichia coli ED1a]
 gi|227885105|ref|ZP_04002910.1| RNA methyltransferase [Escherichia coli 83972]
 gi|229106359|ref|NP_757336.2| putative RNA methyltransferase [Escherichia coli CFT073]
 gi|300980881|ref|ZP_07175230.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|300983987|ref|ZP_07176838.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|301048375|ref|ZP_07195404.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|190906542|gb|EDV66149.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli F11]
 gi|218430356|emb|CAR11226.1| rRNA methyltransferase [Escherichia coli ED1a]
 gi|227837934|gb|EEJ48400.1| RNA methyltransferase [Escherichia coli 83972]
 gi|300299792|gb|EFJ56177.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           185-1]
 gi|300306821|gb|EFJ61341.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           200-1]
 gi|300409123|gb|EFJ92661.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           45-1]
 gi|307556637|gb|ADN49412.1| RNA methyltransferase [Escherichia coli ABU 83972]
 gi|315293342|gb|EFU52694.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           153-1]
 gi|320195357|gb|EFW69985.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli
           WV_060327]
 gi|324012374|gb|EGB81593.1| RNA methyltransferase, TrmH family, group 1 [Escherichia coli MS
           60-1]
          Length = 228

 Score = 42.7 bits (100), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++L       NIGA  R+        +                 A G+ + I  I++
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPAARWVAHGSGDIIDNIKV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKG 239
                  + +H   F     +    K            +  +K       AL+ G E  G
Sbjct: 61  --FKTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 119 LTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|302543922|ref|ZP_07296264.1| putative rRNA methylase [Streptomyces hygroscopicus ATCC 53653]
 gi|302461540|gb|EFL24633.1| putative rRNA methylase [Streptomyces himastatinicus ATCC 53653]
          Length = 258

 Score = 42.7 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 14/126 (11%)

Query: 31  KKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHP 90
           +   +  ++    + PE + L G H +  AL   +    ++  T +  A ++  A L   
Sbjct: 3   EDQATLAERQWRETAPETVLLDGFHALKHALRFGAS--VRVAVTSDKAAAVELAAELAGD 60

Query: 91  FP------VKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQL---LMVLDHV 141
                   +  VP +T+  +V +    +  AL         LDA+        ++VLD  
Sbjct: 61  LTEVITDLLVEVPDRTLRALVPRVHPTRVAALAVRRGRQGNLDALARQPRPAPVVVLD-- 118

Query: 142 NDPHNI 147
            +P N+
Sbjct: 119 -NPRNL 123


>gi|78356143|ref|YP_387592.1| tRNA (Guanine37-N1) methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|119382736|sp|Q313J9|TRMD_DESDG RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName:
           Full=M1G-methyltransferase; AltName: Full=tRNA [GM37]
           methyltransferase
 gi|78218548|gb|ABB37897.1| tRNA (Guanine37-N(1)-) methyltransferase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 425

 Score = 42.7 bits (100), Expect = 0.059,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 44/258 (17%)

Query: 42  HTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTI 101
           H ++PE   ++  H V   L +           + AL       N P       +    +
Sbjct: 176 HYTRPE---IFEGHEVPEILRSGDHGRIAAWRREQALK--TTLLNRPEILRDAQIDYNDL 230

Query: 102 DKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDG 161
             +   +    G  L  A +  P ++   N  + + L ++ D H+IG   R +  F   G
Sbjct: 231 KILRKTDRERPGRNLYCALVHYPVVNK-ENKSVAVSLTNL-DIHDIG---RCSCTFGLGG 285

Query: 162 IITTK-------------RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
              T              R+      V A    G    +    +S + +A+  +     Q
Sbjct: 286 YYITTPIEDQRRLLDGLLRHWTDGPGVSANPDRGTALRL-VRGVSTVEEAIGDIEQRTGQ 344

Query: 209 ---TIGLSSDSK-----KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
               I  S+        + + + ++   + L+ G    GL P   E    +    +    
Sbjct: 345 RPTVIATSARGAGDTGFESVRRMLREKPVLLLFGT-AHGLAPDVLERCDGILR-PIR--- 399

Query: 261 KAL---N-VSN--AAAVA 272
            +L   N +S   AAA+ 
Sbjct: 400 -SLDGYNHLSVRTAAAII 416


>gi|15679837|ref|NP_276955.1| hypothetical protein MTH1849 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622984|gb|AAB86315.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 240

 Score = 42.7 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 32/164 (19%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISN 194
           +V      P NIG + R+   F    +I                A  A + +       +
Sbjct: 13  VVFVEPETPGNIGFLARAMKNFGLRTLILINPC--ELEDEAYYQAMHARDIVEGALIYRD 70

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQE---IKNDKIA----------LILGAEGKGLR 241
           L++ +  +    F  +G +         +   ++  ++A          ++ G EG GL 
Sbjct: 71  LSEMIDSL-EPDF-LVGTTGVPGGSYNVDRIPLRPSQLADAIRPSSGTFILFGREGDGLS 128

Query: 242 PKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYITQN 278
            +       +  +        M       N+++AAA+  Y    
Sbjct: 129 NEEIGLCDMVVSVPTSEEYPIM-------NITHAAAIIFYELFR 165


>gi|146279814|ref|YP_001169972.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558055|gb|ABP72667.1| hypothetical protein Rsph17025_3810 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 243

 Score = 42.7 bits (100), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 57/157 (36%), Gaps = 13/157 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RIS 193
           + +L       NIGA  R+ + F    +          +      ASGA   + +     
Sbjct: 6   VFILVRPQMGENIGAAARAMLNFGLARLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFP 65

Query: 194 NLTDALQKMHSWGFQTIG---------LSSDSKKPLEQEIKND--KIALILGAEGKGLRP 242
           ++ +A++    + F T           ++ +      + +  +  ++ ++ G E  GL  
Sbjct: 66  SVAEAIRDC-DYVFATTARGRELTKPVMTPERAMTHARALTGEGRRVGILFGPERTGLEN 124

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           +    A+++  + +     +LN++    +  Y  +  
Sbjct: 125 EDVALASAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ 161


>gi|150400087|ref|YP_001323854.1| RNA methyltransferase [Methanococcus vannielii SB]
 gi|150012790|gb|ABR55242.1| RNA methyltransferase, TrmH family, group 1 [Methanococcus
           vannielii SB]
          Length = 234

 Score = 42.7 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 59/163 (36%), Gaps = 34/163 (20%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-IS 193
           +++L +     N+GAI R+ + F+   +      S          A  A + +   +   
Sbjct: 4   VVILVNPKYGGNLGAIARNMMNFNVSELRIVG-NSDILDNDAYIRAVHAKDILKNAKFYK 62

Query: 194 NLTDALQKMHSWGFQTIGLSS--DSKKPLEQEIKNDK------------IALILGAEGKG 239
           +L++A+  +      T+  +      + +++     +            + ++ G E  G
Sbjct: 63  SLSNAVSDID----VTVATTGAVSGDRNIKRIPITPRELAKNQKENEGTLGIVFGREDDG 118

Query: 240 LRPKTQETATSMAHLH-------MPGIIKALNVSNAAAVALYI 275
           L+ +  E    +  +        M       N+S+A +V LY 
Sbjct: 119 LKNEDVELCDILVSVPTSEKYPIM-------NLSHAVSVILYE 154


>gi|293606592|ref|ZP_06688948.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
           piechaudii ATCC 43553]
 gi|292814977|gb|EFF74102.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Achromobacter
           piechaudii ATCC 43553]
          Length = 252

 Score = 42.7 bits (100), Expect = 0.064,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 17/150 (11%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSES--AVLAKSASGALEHIPYIRI-SNLTDALQ 200
           P N+G+  R+        ++  +   P  +        ASGAL+ +   RI  +L +AL 
Sbjct: 7   PGNVGSAARAIKTMGFSELVLVEPKFPDVTTQPEAIALASGALDVLENARIYPSLEEALA 66

Query: 201 KMHSWGFQTIG---------LSSDSKKPLEQEIKNDKI----ALILGAEGKGLRPKTQET 247
            +    F                     L +E          A++LG E  GL       
Sbjct: 67  PVTMA-FALTARVRDLGPPPCDIRQAADLAREHLAGTAEGVAAVVLGTERAGLTNAQIAL 125

Query: 248 ATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              + H+       +LNV+ A  +A +  +
Sbjct: 126 CHRICHIPANPEYSSLNVAQALQLAAWELR 155


>gi|269104837|ref|ZP_06157533.1| RNA methyltransferase TrmH family [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161477|gb|EEZ39974.1| RNA methyltransferase TrmH family [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 182

 Score = 42.7 bits (100), Expect = 0.065,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 18/157 (11%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEH 186
           +NS  ++ L +   P N+GA++R+A  +  D +  T      +   S      +      
Sbjct: 5   QNSYTIIGLTNPKSPTNVGAVMRAAGCYQADEVKYTGQRYDRAAKFSTDTKSMSQ----T 60

Query: 187 IPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQ 245
           IP   + +L D          + + +   +   PL      +K   I G E   +  +  
Sbjct: 61  IPLTGVDSLLDG----LDDDIEIVCVELAEGATPLPLFQHPNKAIYIFGPEDGSIDQEIA 116

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A  + ++   G +   N++ +  V LY   +  AK
Sbjct: 117 DRAQHVVYVPTVGCM---NLAASVNVLLY---DRLAK 147


>gi|315633898|ref|ZP_07889187.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Aggregatibacter segnis ATCC 33393]
 gi|315477148|gb|EFU67891.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
           [Aggregatibacter segnis ATCC 33393]
          Length = 255

 Score = 42.7 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 65/171 (38%), Gaps = 26/171 (15%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESA 174
            +E APLL+     +  +  +++++  +   NIG+  R+        ++     +P +  
Sbjct: 1   MVEYAPLLNKIKMIMLENIRIVLIETSHS-GNIGSTARAMKTMGLTDLVL---VAPKQGV 56

Query: 175 V--LAKSASGALEHIP-YIRISNLTDALQKMHSWGFQTIGLSSD--------------SK 217
                  A+GA + +   + + N ++A+          IG S+                +
Sbjct: 57  DDQAIALAAGAEDVVKSAVVVENFSEAVADCS----LVIGTSARLRHLQNSLIEPRECGE 112

Query: 218 KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
           K +   I + K+A++ G E  GL  +          +       +LN++ A
Sbjct: 113 KAINHAI-SGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMA 162


>gi|331681388|ref|ZP_08382025.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           H299]
 gi|331081609|gb|EGI52770.1| hypothetical tRNA/rRNA methyltransferase LasT [Escherichia coli
           H299]
          Length = 228

 Score = 42.3 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++L       NIGA  R+        +                 A G+ + I  I++
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPAARWVAHGSGDIIDNIKV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKG 239
                  + +H   F     +    K            +  +K       AL+ G E  G
Sbjct: 61  --FKTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 119 LTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|333011385|gb|EGK30799.1| hypothetical protein SFK272_0343 [Shigella flexneri K-272]
          Length = 261

 Score = 42.3 bits (99), Expect = 0.069,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A      +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGYGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|323494811|ref|ZP_08099909.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
 gi|323310951|gb|EGA64117.1| rRNA methylase [Vibrio brasiliensis LMG 20546]
          Length = 241

 Score = 42.3 bits (99), Expect = 0.070,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        + +V  ++ + A       + + +
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSNLVL----VDPQCSVDEQAIALAAGAADIAQSATI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIK--------------NDKIALILGAEGKGLR 241
            + L +  +     +G S+ S+  LE  +               N  +AL+ G E  GL 
Sbjct: 63  VNTLSEAVADCALVVGSSARSRT-LEWPMLEPRECGEKFVAEGQNSPVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
               +T      +       +LN++ A
Sbjct: 122 NDELQTCHYHVCIPANPEYSSLNLAMA 148


>gi|309808393|ref|ZP_07702293.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
 gi|308168361|gb|EFO70479.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
          Length = 98

 Score = 42.3 bits (99), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 26  NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALARLDWDA 85
           N+   K+++   QK ++     +  + G H V  AL+   +K   ++ T+  + +L    
Sbjct: 8   NNSIIKQIRKLKQK-KYRKDQMSYLIEGFHLVKEALD-MEQKYEYVIGTQETINKL-KLT 64

Query: 86  NLPHPFPVKTVPPQTIDKIVGKE 108
           N      +  V     D++   E
Sbjct: 65  NKIFDKSIILVNQAICDQLSDTE 87


>gi|303287456|ref|XP_003063017.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455653|gb|EEH52956.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score = 42.3 bits (99), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK---------------ALNVSNAAA 270
             K+A++ G E  GL  +   TA +   +   G                  +LN+S A  
Sbjct: 224 RGKVAVLFGNERTGLTNEELGTAHAAVAIPTAGQGSLCRKSLKYTGGTGPTSLNLSQAVG 283

Query: 271 VALYI 275
           V  Y 
Sbjct: 284 VIAYE 288


>gi|261856767|ref|YP_003264050.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
           neapolitanus c2]
 gi|261837236|gb|ACX97003.1| RNA methyltransferase, TrmH family, group 1 [Halothiobacillus
           neapolitanus c2]
          Length = 271

 Score = 42.3 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 19/146 (13%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           P    V   ++ +VL   +   N+GA+ R+        ++     +  +   LA +A  A
Sbjct: 10  PDSPDVHADRIQIVLCGTSHTGNLGAVARAMKNMGLHRLVLVSPKTAIDDQALA-TAKHA 68

Query: 184 LEHIPYIR-ISNLTDALQKMHSWGFQTIGLSS-------------DSKKPLEQEIKNDKI 229
            + +   R + NL DAL        +    ++             D+ + +        I
Sbjct: 69  ADILNTARQVDNLPDALADS----VEVWATTARPRDLHLPVMSARDAAETIAASPSTGVI 124

Query: 230 ALILGAEGKGLRPKTQETATSMAHLH 255
           +++ GAE  GL  +    A  +  + 
Sbjct: 125 SIVFGAERTGLTNQEISWAQRIIEIP 150


>gi|117620534|ref|YP_857904.1| 23S rRNA methyltransferase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561941|gb|ABK38889.1| 23S rRNA methyltransferase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 168

 Score = 42.3 bits (99), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 138 LDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTD 197
           L +   P N+GA++R+A  +  D +  T       +   A      +E IP + + +L +
Sbjct: 29  LVNPKSPENVGAVMRAAGCYGADEVYYTGNR-FELARRFATDTKQMVEKIPLLGVDDLME 87

Query: 198 ALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQETATSMAHLH 255
            +      G   + +   +    L   +   +   I G E  G L P   +    + ++ 
Sbjct: 88  MVP----AGCTPVLVDLIEGATSLPDYVHPARAFYIFGPE-DGTLDPARFKAVQEVIYVP 142

Query: 256 MPGIIKALNVSNAAAVALYITQNHFAK 282
             G +   N++ +  V LY   +  AK
Sbjct: 143 TRGCM---NLAASVNVILY---DRLAK 163


>gi|152996098|ref|YP_001340933.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150837022|gb|ABR70998.1| RNA methyltransferase, TrmH family, group 1 [Marinomonas sp. MWYL1]
          Length = 260

 Score = 42.3 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 13/130 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL +   P N+GAI R+        +      +   S      A+GA++ +     +S 
Sbjct: 7   IVLINTFHPGNVGAIARAMKNMGLTNLYLVDP-NDYPSEEATSRAAGAVDLLENATIVST 65

Query: 195 LTDALQKM----------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L +A+              ++    +     ++  + + + ++ +A++ G E  GL    
Sbjct: 66  LEEAIADCSLVIGTSARHRTFQLPIMNARECAESVIPEAVDHN-VAIVFGRETTGLLNDE 124

Query: 245 QETATSMAHL 254
                   ++
Sbjct: 125 IAQCHRQVYI 134


>gi|221134597|ref|ZP_03560900.1| putative cold-shock RNA methyltransferase [Glaciecola sp. HTCC2999]
          Length = 166

 Score = 42.3 bits (99), Expect = 0.075,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 18/141 (12%)

Query: 146 NIGAILRSAVAFSCDGIITTK---RYSPSESAVLAKSASGALEHIPYIRISNLTDALQKM 202
           N+ +ILR+A  +    +  T     Y+   +A   +      + IP + + +L       
Sbjct: 18  NVASILRAAGCYGVSAVYYTGQRFGYAKEFNADTQRMR----DKIPTVGVDDLL----AY 69

Query: 203 HSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
              G   + +   ++  PL +    +    ILG E   +  +  ETA ++ ++       
Sbjct: 70  KPQGASIVVVELVENAIPLPEFTHPENAYYILGPEDGSVPIEIVETADAVVYVP---TFN 126

Query: 262 ALNVSNAAAVALYITQNHFAK 282
           ++N+     V LY   +  AK
Sbjct: 127 SMNLGATGNVILY---DRLAK 144


>gi|293390584|ref|ZP_06634918.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951118|gb|EFE01237.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 246

 Score = 42.3 bits (99), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A+A   + ++ +   + S S  +A  +          R+ +L ++L +    G + +  +
Sbjct: 48  ALAAGAEDVVKSAVTAESFSQAVADCSLVIGTS---ARLRHLQNSLIEPRECGKKAVAYA 104

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           +           N K+A++ G E  GL  +          +       +LN++ A  +  
Sbjct: 105 T-----------NGKVAIVFGRERVGLTNEELLKCHYHVTIPANPDYASLNLAMAVQLIA 153

Query: 274 YITQ 277
           Y  +
Sbjct: 154 YEVR 157


>gi|15804974|ref|NP_291016.1| putative RNA methyltransferase [Escherichia coli O157:H7 EDL933]
 gi|12519435|gb|AAG59583.1|AE005671_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 228

 Score = 42.3 bits (99), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 20/147 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGSGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALN 264
            GL  +    A  +  + M     +LN
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLN 143


>gi|90420931|ref|ZP_01228836.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334906|gb|EAS48678.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
          Length = 311

 Score = 42.3 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 21/143 (14%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           NIG + R+   F    +          +     +AS A   I   R   ++  A+  +  
Sbjct: 51  NIGMVARAMANFGLSDLRLVSPRDGWPNERAVAAASRADHVIEAARLYDSVEAAVADLT- 109

Query: 205 WGFQTIGLSSDSKKPLEQEIKNDKIA--------------LILGAEGKGLRPKTQETATS 250
                   ++ ++   +   + +  A              ++ G E  GL  +    A  
Sbjct: 110 ---FVYATTARARDSFKPVREPETAAANLRARIGAGQSAGILFGRERFGLSNEEVGLADE 166

Query: 251 MAHLHMPGIIKALNVSNAAAVAL 273
           +    +     +LN++ A  V L
Sbjct: 167 IVTFPVDPDFASLNIAQA--VLL 187


>gi|73669106|ref|YP_305121.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
 gi|72396268|gb|AAZ70541.1| SpoU rRNA methylase [Methanosarcina barkeri str. Fusaro]
          Length = 243

 Score = 42.3 bits (99), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 29/152 (19%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQ--- 200
            N+G++ R+   F    ++                +S A + +   R +S L +A++   
Sbjct: 19  GNVGSVARAMKNFGYTDLVLVNPC--KLEGEARAMSSHARDVLEGARIVSTLEEAVKGAN 76

Query: 201 -KMHSWGFQTIGLSSDSKKPLEQE--------IKNDKIALILGAEGKGLRPKTQETATSM 251
            ++ + G  ++      + PL             +  IA++ G E  G R    ++   +
Sbjct: 77  LRIGTTGVASLKTGEHIRLPLYTSRELKERLKDYSGTIAILFGREDTGFRNDELKSFDML 136

Query: 252 AHLH-------MPGIIKALNVSNAAAVALYIT 276
             +        M       N+S+A AV LY  
Sbjct: 137 FTIPTSEIYPIM-------NLSHAVAVVLYEL 161


>gi|291086095|ref|ZP_06354807.2| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
           ATCC 29220]
 gi|291069358|gb|EFE07467.1| RNA methyltransferase, TrmH family, group 1 [Citrobacter youngae
           ATCC 29220]
          Length = 242

 Score = 42.3 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDG--IITTKRYSPSESAVLAKSASGALEHIPYI 190
           +L ++L       NIGA  R+          I+ ++ +    +  +A  +   +++I   
Sbjct: 16  RLTIILVAPARAENIGAAARAMKTMGFTQLRIVDSEAHLEPATRWVAHGSGDIIDNINVF 75

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKK-----------PLEQEIKN--DKIALILGAEG 237
               L +A   +H   F     +    K           PL QE     D  AL+ G E 
Sbjct: 76  --PTLAEA---LHDVDFTVATTARSRAKFHYYATPVELVPLLQEKSTWMDHAALVFGRED 130

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 131 SGLTNEELALADVLTGVTMVADYPSLNLGQA--VMVYCYQ 168


>gi|325265919|ref|ZP_08132605.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324982557|gb|EGC18183.1| RNA methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 271

 Score = 42.3 bits (99), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 220 LEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYIT 276
           L        +AL+ G E  GL   +  +    +  +   G     +LN++ A  V  Y  
Sbjct: 128 LAAAQARQSVALVFGNETFGLSIDEV-QHCNRLMTI--SGNPDYFSLNLAQAVQVVCYEL 184

Query: 277 QNH 279
            + 
Sbjct: 185 FSQ 187


>gi|320177676|gb|EFW52665.1| RNA methyltransferase, TrmH family, group 1 [Shigella boydii ATCC
           9905]
          Length = 228

 Score = 42.3 bits (99), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++L  +    NIGA  R+        +             +     G  + I  I++
Sbjct: 2   RITIILVALARAENIGAAARAMKTMGFSELRIVD-SQAHLEPAIRWVVHGFGDVIDNIKV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKG 239
                  + +H   F     +    K            +  +K       AL+ G E  G
Sbjct: 61  --FPTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 119 LTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|332978754|gb|EGK15446.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Psychrobacter
           sp. 1501(2011)]
          Length = 300

 Score = 41.9 bits (98), Expect = 0.089,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 24/150 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISN 194
           +V+ +   P NIG+  R+ +      ++      P +   +A  A+GA   +     + +
Sbjct: 30  IVMVNTTLPANIGSAARAMLTMGLTDLVIVDPRHPIDEDSVAH-AAGAKSVLDNCTVVDS 88

Query: 195 LTDALQKMH--------SWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKT 244
           L  AL   H                +   + +K  L +  ++ K+A++ G E +GL  + 
Sbjct: 89  LEQALADCHLVFAASSRQRHIPRPVVTPDNAAKLILSRPAEDTKVAVLFGREDRGLTNQE 148

Query: 245 QETATSMAHL------HMPGIIKALNVSNA 268
              A     +       +      LNV++A
Sbjct: 149 LAMADYHIQIDANPDYPV------LNVASA 172


>gi|316932884|ref|YP_004107866.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris DX-1]
 gi|315600598|gb|ADU43133.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris DX-1]
          Length = 400

 Score = 41.9 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 17/159 (10%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRIS 193
           +++L       NIG   R+   F    +   K      +    ++++GA   +       
Sbjct: 19  VVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNIAATRASAGADHILNAVELFD 78

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLE----------QEIKNDKIA-LILGAEGKGLRP 242
           ++ DA+    +  F T   + D  KP+             I     A ++ G E  GL  
Sbjct: 79  SVADAVADC-ALLFATTARAHDQAKPVRGPEAAAQEIVASIATGVTAGILFGRERHGLEN 137

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
                A  +    +     +LN++ A  V L  Y    H
Sbjct: 138 DEVALANRIVTFPVNPAFASLNLAQA--VLLMGYEWFKH 174


>gi|260776734|ref|ZP_05885629.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607957|gb|EEX34222.1| tRNA:Cm32/Um32 methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 241

 Score = 41.9 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 19/147 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  +  ++ + A      ++ + +
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLTNLVL----VDPQCEIDEQAIALAAGAADIVQAALI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
            + L    +     +G S+ S+  LE  +   +              +AL+ G E  GL 
Sbjct: 63  VNTLNDAVADCSLVVGSSARSRT-LEWPMLEPRECGKKFVEQGAMSQVALVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNA 268
            +  +T      +       +LN++ A
Sbjct: 122 NEELQTCHYHVCIPANPEYSSLNLAMA 148


>gi|16272328|ref|NP_438541.1| hypothetical protein HI0380 [Haemophilus influenzae Rd KW20]
 gi|1573350|gb|AAC22038.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 241

 Score = 41.9 bits (98), Expect = 0.095,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   NIG+  R+        +      S  E +     ++GA   +   R+  +
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNARVVDS 64

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ--------EIKNDKIALILGAEGKGLRPK 243
             +A+          IG S+     +  L +             KIA++ G E  GL  +
Sbjct: 65  FDEAVDDCP----LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 157


>gi|152978538|ref|YP_001344167.1| RNA methyltransferase [Actinobacillus succinogenes 130Z]
 gi|150840261|gb|ABR74232.1| RNA methyltransferase, TrmH family, group 1 [Actinobacillus
           succinogenes 130Z]
          Length = 249

 Score = 41.9 bits (98), Expect = 0.097,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 20/162 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISN 194
           +VL   +   NIG+  R+        +      S  ++  +A  ++GA + I   + + +
Sbjct: 7   IVLVETSHSGNIGSAARAMKTMGLTNLYLVAPKSRIDAQAVA-LSAGAEDVIKNAVLVPS 65

Query: 195 LTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKNDKIALILGAEGKGL 240
             +A+          IG S+                +K +E   K  +IA++ G E  GL
Sbjct: 66  FDEAVADCS----LVIGTSARLRHLQSSLIEPRECGEKAIEAATKCGQIAIVFGRERVGL 121

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
                       ++       +LN++ A  +  Y  +  + K
Sbjct: 122 TNDELLKCRYHLNIPANPDYSSLNLAMAVQLVCYELRMAYLK 163


>gi|309378837|emb|CBX22542.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 272

 Score = 41.9 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 53/204 (25%)

Query: 115 ALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT---------- 164
                P L   LD +R     +VL   + P NIG+  R+        +            
Sbjct: 1   MASEKPALPAYLDNIR-----IVLTRTSHPANIGSAARAMKTMGLHRLTIVAPNLMATPM 55

Query: 165 --TKRYSPSESAVLAKS-------ASGALEHI-PYIRISNLTDALQKMHSWGFQTIGLSS 214
                    E     K        ASGA + +     ++ L +AL          I  + 
Sbjct: 56  TENPPVFDPEYPQSFKLPEESFILASGAADVLHNAAIVATLDEALAD------TAIACAL 109

Query: 215 DSK----------------KPLEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMP 257
            S+                + L+   + +++AL+ G E  GL   + +     +  +   
Sbjct: 110 TSRRREITAPLQTPRDLVPELLQAAQRGEQVALVFGNETFGLSIEEVRA-CNRLMTI--N 166

Query: 258 GIIK--ALNVSNAAAVALYITQNH 279
           G     +LN++ A  V  Y   + 
Sbjct: 167 GNPDYFSLNLAQAVQVVCYEIFSQ 190


>gi|302348092|ref|YP_003815730.1| hypothetical protein ASAC_0292 [Acidilobus saccharovorans 345-15]
 gi|302328504|gb|ADL18699.1| hypothetical protein ASAC_0292 [Acidilobus saccharovorans 345-15]
          Length = 177

 Score = 41.9 bits (98), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 16/110 (14%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  +G +       S    L K+++     I Y    N  + ++   + G + + L+
Sbjct: 24  ARAFGANGFVLEGVCDDSVYNSLTKASNMWGGAIHYECGVNGHEYVKSWKANGGEVVHLT 83

Query: 214 SDSKKPLEQEI-----KNDKIALILGAEGKGLRPKTQE----TATSMAHL 254
                P++  I           +++G        K +      A     +
Sbjct: 84  MYGM-PVDDAIGKLSSSPKPKLIVVG------SQKVEAFYYMNADYNIAI 126


>gi|239908205|ref|YP_002954946.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
 gi|239798071|dbj|BAH77060.1| putative RNA methyltransferase [Desulfovibrio magneticus RS-1]
          Length = 250

 Score = 41.9 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 25/162 (15%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYI 190
           + L +VL       N+GA  R+        ++     +   E A    ++ G L      
Sbjct: 3   NNLTIVLFRPKFSENVGAAARACANMGVGRLVLVDPPAFDMERARPMATSKGGLVLDRLE 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA--------------- 235
               L +A+           G ++      +  +   + A   G                
Sbjct: 63  ICGTLAEAVAGAE----TVYGTTARLGGWRKSVLTPGQAA---GGAVKTLQGGGGVAVVF 115

Query: 236 --EGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             E  GL  +  +  + + ++       +LN++ A  V  Y 
Sbjct: 116 GPEDAGLSNQETQLCSRLVNIPTADEATSLNLAQAVLVVCYE 157


>gi|307106546|gb|EFN54791.1| hypothetical protein CHLNCDRAFT_52745 [Chlorella variabilis]
          Length = 302

 Score = 41.9 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 62/203 (30%), Gaps = 56/203 (27%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-R 191
            + +VL     P ++G + RS   F C  +   +      +      + GA   +    R
Sbjct: 79  DVCVVLVSPKRPISVGTVARSLSCFECLDLRIVEPCCDQLARSSRNGSKGAQFLLWQAQR 138

Query: 192 ISNLTDALQ-----------------------KMHSWGFQTIGL--------------SS 214
              L  AL                        ++ +   Q + L                
Sbjct: 139 HGTLESALAGVSFSVACTRWVAGRPSAYRSMAELLAAP-QIVALLSPSHLEPAAATKHDG 197

Query: 215 DSKKPLEQEIKN-------------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
           ++   +    +               K+AL+ G E  GL     +   +   + +  + +
Sbjct: 198 NAGGSIGALAQQQQQQLPQQRQPGQRKLALVFGREVSGLTAAEVDMCDATLSIPIGRLQE 257

Query: 262 ALNVSNAAAVA---LYITQNHFA 281
           ++++S+A +V    L+  Q   A
Sbjct: 258 SMSLSHAVSVVLSRLFE-QRALA 279


>gi|296101179|ref|YP_003611325.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055638|gb|ADF60376.1| putative RNA methyltransferase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 228

 Score = 41.9 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 20/146 (13%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI-PYIRISNLTDALQKMHS 204
           NIGA  R+        +                 A G+ + +        L DA   +H 
Sbjct: 15  NIGAAARAMKTMGFTDLRIVD-SVAHLEPAARWVAHGSGDILDNITTYDTLADA---LHD 70

Query: 205 WGFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRPKTQETATSM 251
             F     +    K        +             K AL+ G E  GL       A  +
Sbjct: 71  ISFTVATTARSRAKFHYYATPAELVPMLSEKSQWLEKAALVFGREDSGLTNDELALADVL 130

Query: 252 AHLHMPGIIKALNVSNAAAVALYITQ 277
               M     +LN+  A  V +Y  Q
Sbjct: 131 TGAPMVADYPSLNLGQA--VMVYCYQ 154


>gi|260574015|ref|ZP_05842020.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
 gi|259023481|gb|EEW26772.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter sp. SW2]
          Length = 270

 Score = 41.9 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 23/180 (12%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            A  L+   D   +   ++V        NIGA  R+ + F  + +          +    
Sbjct: 15  RAAYLAAMQDPQASPAFILV--RPQMGENIGAAARAMLNFGLERLRVVGPRDGWPNPKAV 72

Query: 178 KSASGALEHIPYI-RISNLTDALQKMHSWGFQTIG---------LSSDSKKPLEQEI--K 225
             ASGA   + +     ++  A+     + F T           ++ +      + +   
Sbjct: 73  AMASGAGRLLDFAGPYPDVQAAIADC-DYVFATTARNRELTKPVMTPERAMEHARALIAA 131

Query: 226 NDKIALILGAEGKGL--RPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNHFA 281
             ++ ++ G E  GL         A  +  + +     +LN+     V L  Y  +   A
Sbjct: 132 GKRVGVLFGPERAGLENSDLVLANA--IVSVPVNPDFPSLNLGQC--VLLLGYEWRRQTA 187


>gi|260912947|ref|ZP_05919432.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
           dagmatis ATCC 43325]
 gi|260632937|gb|EEX51103.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Pasteurella
           dagmatis ATCC 43325]
          Length = 241

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 19/159 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISN 194
           +VL   +   NIG+  R+        +         +   +A  ++GA + +   + + +
Sbjct: 7   IVLVETSHSGNIGSAARAMKTMGLSHLYLVAPRQAIDEQAIA-LSAGAEDVVKQAVIVDS 65

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ----------EIKNDKIALILGAEGKGLR 241
              A+          +G S+     +  L +           +K+ ++A++ G E  GL 
Sbjct: 66  FDKAVADCS----LVVGTSARLRHLQNTLIEPRKCAMKAVEAVKSGQVAIVFGRERIGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
            +          +       +LN++ A  +  Y  +  F
Sbjct: 122 NEELLKCRYHLTIPANPEYSSLNLAMAVQLVCYELRMAF 160


>gi|260772015|ref|ZP_05880932.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
 gi|260612882|gb|EEX38084.1| tRNA (cytosine34-2'-O-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
          Length = 39

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
               + M    ++LN+SNA A+  +       
Sbjct: 3   QRIRIPMMPNARSLNLSNAVAIIAFEAWRQLG 34


>gi|224368391|ref|YP_002602554.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
 gi|223691107|gb|ACN14390.1| TrmH1 [Desulfobacterium autotrophicum HRM2]
          Length = 226

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           N+++AL+ G E +GL         ++ ++   G   +LN++ A  +  Y  
Sbjct: 81  NNRVALLFGPEDRGLTNGEICFCHALINIPTLG-FSSLNLAQAVVIVCYEL 130


>gi|242238023|ref|YP_002986204.1| RNA methyltransferase [Dickeya dadantii Ech703]
 gi|242130080|gb|ACS84382.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii
           Ech703]
          Length = 232

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 22/147 (14%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKMHS 204
           N+GA  R+      + +                 A G+ + +   +  S+L DAL  +  
Sbjct: 15  NVGAAARAMKTMGFECLRIVD-SQAHREPAARWVAHGSSDILERAQTFSSLADALVDVD- 72

Query: 205 WGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKGLRPKTQETATS 250
               T+  ++ S+         +               +AL+ G E  GL  +    A  
Sbjct: 73  ---FTVATTARSRARFHYYSSPEQVLGVIREKQQWVKSVALVFGREDSGLTNEELALADI 129

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + M     +LN+  A  V +Y  Q
Sbjct: 130 LTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|218514243|ref|ZP_03511083.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
           [Rhizobium etli 8C-3]
          Length = 51

 Score = 41.6 bits (97), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           LG E  G+     E A +   + M    +++NV+ +AA+ +      
Sbjct: 1   LGRESAGVPDHVHERADARILIPMVEGQRSINVAVSAAMIVGEAMRQ 47


>gi|84501049|ref|ZP_00999284.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
           HTCC2597]
 gi|84391116|gb|EAQ03534.1| RNA methyltransferase, TrmH family, group 1 [Oceanicola batsensis
           HTCC2597]
          Length = 244

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 13/157 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RIS 193
           + VL       NIGA  R+   F  D +  T       +      ASGA   +       
Sbjct: 5   VFVLVRPQMGENIGAAARAMWNFGLDRMRITSPRDGWPNQKAVAMASGAGRLLDEAGIFD 64

Query: 194 NLTDALQKMHSWGFQTIG---------LSSDSKKPLEQEI--KNDKIALILGAEGKGLRP 242
           +   ALQ   +  F T           ++ +    +   +  + +K+A++ G E  GL  
Sbjct: 65  STAGALQD-RTHVFATTARPRGLTKPVVTPERAMEMAAGMIGRGEKVAVLFGPERAGLEN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
                A ++ ++ +     +LN++    +  Y  + H
Sbjct: 124 DDVVRANTIINVPVNPDFPSLNLAQCVLLCAYEWRRH 160


>gi|333012280|gb|EGK31662.1| hypothetical protein SFK227_5376 [Shigella flexneri K-227]
          Length = 228

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYI 190
           ++ ++L       NIGA  R+          I+ ++ +    +  +A      +++I   
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPATRWVAHGYGDIIDNIKVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEG 237
                    + +H   F     +    K            +  +K       AL+ G E 
Sbjct: 62  -----PTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADVLTGVPMVADYPSLNLGQA--VMVYCYQ 154


>gi|220931578|ref|YP_002508486.1| hypothetical protein Hore_07340 [Halothermothrix orenii H 168]
 gi|219992888|gb|ACL69491.1| uncharacterized protein conserved in bacteria [Halothermothrix
           orenii H 168]
          Length = 193

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 17/95 (17%)

Query: 193 SNLTDALQKMHSW-GFQ--TIGLSSD------SKKPLEQEIKN--DKIALILGAEGKGLR 241
             L   + ++    G +   I   +       S K + + I N  D   +I G  G GL 
Sbjct: 92  ETLDAVIDEIKEETGVRPKLIATDARQFSNSISYKKMREVIFNSPDPYLIIFGT-GWGLT 150

Query: 242 PKTQETATSMAHLHMPGIIKALN-VSN--AAAVAL 273
            +T      +    + G  +  N +S   AA++ L
Sbjct: 151 EETINKCDYILE-PIYGRGE-FNHLSVRSAASIIL 183


>gi|20094240|ref|NP_614087.1| SpoU-like RNA methylase [Methanopyrus kandleri AV19]
 gi|23822319|sp|Q8TX72|TRM56_METKA RecName: Full=tRNA ribose 2'-O-methyltransferase aTrm56
 gi|19887271|gb|AAM02017.1| SpoU-like RNA methylase [Methanopyrus kandleri AV19]
          Length = 178

 Score = 41.6 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF   G++ +  +  S    +               + N    ++     G   + L
Sbjct: 29  TARAFGAAGVLISGDHDESVIESVEDVVERWGGPFTVQWVGNWRRVIKDWKRSGGSVVHL 88

Query: 213 SSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
           +         + +    +++ +I+GA GK +  +  E +     +      +      AA
Sbjct: 89  TMYGLHIDDVIGELRGENELLVIVGA-GK-VPAEVFELSDYNVAIGHQPHSE-----VAA 141

Query: 270 -AVAL 273
            AV L
Sbjct: 142 LAVFL 146


>gi|309808741|ref|ZP_07702627.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
 gi|308167977|gb|EFO70109.1| RNA methyltransferase, TrmH family [Lactobacillus iners LactinV
           01V1-a]
          Length = 94

 Score = 41.6 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 213 SSDSKKPLEQEIKNDKIALILGAEGKGLRPK-TQETATSMAHLHMPGIIKALNVSNAAAV 271
           SS S   +E          + G E  GL     +E       + M   I+A N++N+ A+
Sbjct: 8   SSKSYTDIEYTDPTKNYYFVFGKETTGLPKTFMREYYERNLRIPMSDHIRAFNLANSVAI 67

Query: 272 ALYITQNH 279
            L+     
Sbjct: 68  VLFEALRQ 75


>gi|90410858|ref|ZP_01218872.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
 gi|90328071|gb|EAS44382.1| putative RNA methyltransferase, TrmH family protein [Photobacterium
           profundum 3TCK]
          Length = 218

 Score = 41.6 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 203 HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKA 262
              G +TI           +E     +A++ G E  GL  +  +      ++       +
Sbjct: 69  RESGIKTI-----------EEAAAHPVAILFGRERTGLTNEELQKCHCHVYIPANPEYSS 117

Query: 263 LNVSNA 268
           LN++ A
Sbjct: 118 LNLAMA 123


>gi|158294903|ref|XP_315892.4| AGAP005864-PA [Anopheles gambiae str. PEST]
 gi|157015781|gb|EAA11568.4| AGAP005864-PA [Anopheles gambiae str. PEST]
          Length = 1386

 Score = 41.6 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 24/193 (12%)

Query: 95   TVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVR-NSQLLMVLDHVNDPHNIGAILRS 153
             VP + +D         Q L LE    L  +      +  L +V  +V +  ++  + R 
Sbjct: 1204 IVPLKRLD-------PRQDLMLELPYRLYNSQQKREASKGLYVVASNVTNVPDLADLARM 1256

Query: 154  AVAFSCDGIITTKRYS-PSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI-- 210
               F    +         S+   +  ++    + +  ++  N+   L  +   G+  +  
Sbjct: 1257 GKRFGIKQLFINSLQDLDSKQFKMRSASVEQWQTVRELKAHNVYSYLWDLQDKGYTLVNV 1316

Query: 211  -GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE---TATSMAHLHMPGIIKALNVS 266
                +    PL Q     K  L+L            E    A    ++   G  + L V 
Sbjct: 1317 KHTETPQSTPLHQLQLPKKCVLVL---------NLLERFPHAVLNVYIPPIGAKRLLTVP 1367

Query: 267  NAAAVALYITQNH 279
              AA+ ++     
Sbjct: 1368 ETAALLMWEYAKQ 1380


>gi|117929111|ref|YP_873662.1| peptidase S8 and S53, subtilisin, kexin, sedolisin [Acidothermus
           cellulolyticus 11B]
 gi|117649574|gb|ABK53676.1| peptidase S8 and S53, subtilisin, kexin, sedolisin [Acidothermus
           cellulolyticus 11B]
          Length = 548

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 148 GAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           GA + SAV  +   ++   R  P  +  +   + G  + +PY +   L  A++     G 
Sbjct: 244 GATMASAVIAAIQWVVA-HRNDPGLNIKVLNLSLGVRDGLPY-QQDPLDAAVEAAWKAGI 301

Query: 208 QTIGLSSDSKKPLEQEIKNDKIALILGA 235
             +  + +  +       ND   + +GA
Sbjct: 302 TVVAAAGNDGQVGMTAPANDPYVIAVGA 329


>gi|77465011|ref|YP_354514.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
 gi|126464273|ref|YP_001045386.1| RNA methyltransferase [Rhodobacter sphaeroides ATCC 17029]
 gi|332560613|ref|ZP_08414931.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|77389429|gb|ABA80613.1| tRNA/rRNA methyltransferase (SpoU) [Rhodobacter sphaeroides 2.4.1]
 gi|126106084|gb|ABN78614.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332274411|gb|EGJ19727.1| RNA methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 243

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 53/160 (33%), Gaps = 19/160 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RIS 193
           + +L       NIGA  R+ + F    +          +      ASGA   + +     
Sbjct: 6   VFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFP 65

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKG 239
            + +A++            ++  ++  +  +  +              ++ ++ G E  G
Sbjct: 66  TVAEAIRDCD----YVFATTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTG 121

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L  +    A ++  + +     +LN++    +  Y  +  
Sbjct: 122 LENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ 161


>gi|219851926|ref|YP_002466358.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
           palustris E1-9c]
 gi|219546185|gb|ACL16635.1| RNA methyltransferase, TrmH family, group 1 [Methanosphaerula
           palustris E1-9c]
          Length = 249

 Score = 41.2 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 32/154 (20%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G++ R    F    ++                AS A + +   R+ +L +   +   
Sbjct: 15  GNVGSVARVMKNFGFSRLVLINPC--PLGNEARARASHAQDLLDSARVCSLEEVYAESA- 71

Query: 205 WGFQTIGLSSDSKK--------PLEQ--------EIKNDKIALILGAEGKGLRPKTQETA 248
               TI  + +  K        P  +           +  I+++ G E  GL       +
Sbjct: 72  ---LTIATTGELSKTICNPMRMPYYEPSEIRSMIAEIDGTISILFGRENWGLNNGEVAAS 128

Query: 249 TSMAHLHMPGIIKA-----LNVSNAAAVALYITQ 277
             +  +       +     LN+S+A  +  Y   
Sbjct: 129 DLICTIP-----TSPEYPILNLSHAVGLVCYELA 157


>gi|120556563|ref|YP_960914.1| putative RNA methyltransferase [Marinobacter aquaeolei VT8]
 gi|120326412|gb|ABM20727.1| RNA methyltransferase, TrmH family, group 1 [Marinobacter aquaeolei
           VT8]
          Length = 226

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 20/157 (12%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           +L  VL     P N+GA  R+        +      S   +    ++   A      +  
Sbjct: 2   KLAFVLVEPKVPENVGAAARALCTMGFSELWLV--NSDLHTRP--EAHWLAHGSDHILDN 57

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAEGK 238
           + +   L  + +     +G S+  +   +   +   +              AL+ G E +
Sbjct: 58  ARIFPDLAAVRNSADLLMGTSAKPRHHRQDWHEPGALRSVLANKGGSVATAALVFGREDR 117

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           GL  +       +    M     +LN+S A  V LY 
Sbjct: 118 GLANEELALCDLLTGFPMAVSYPSLNLSQA--VMLYA 152


>gi|307108600|gb|EFN56840.1| hypothetical protein CHLNCDRAFT_144422 [Chlorella variabilis]
          Length = 365

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P NIGA+LR+A  F    ++       +    +  ++  +        +  L
Sbjct: 26  VVLVSPKTPANIGAVLRAAENFEAHDVVVVDARCDARCGEVEVTSCNSHVMHSMRLVPTL 85

Query: 196 TDALQ 200
            DAL 
Sbjct: 86  ADALA 90


>gi|307354074|ref|YP_003895125.1| RNA methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307157307|gb|ADN36687.1| RNA methyltransferase, TrmH family, group 1 [Methanoplanus
           petrolearius DSM 11571]
          Length = 247

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 27/166 (16%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            ++ +VL       NIG   R    F    +       P         +S A + +   R
Sbjct: 2   PEIEIVLCEPLYEGNIGFAARVMKNFGFYNLTL--INPPDIGDEARARSSHARDVLENAR 59

Query: 192 -ISNLTDALQKMHSWGFQTIGLSSDSKK-------PLEQ--------EIKNDKIALILGA 235
            +++L + ++               SK        P  +        +    ++++I G 
Sbjct: 60  HVTSLDEVIE---ESNILVATTGGLSKTVTHAMRMPYYEPSELRDMIKDIEGRVSIIFGR 116

Query: 236 EGKGLRPKTQETATSMAHLHMPGI---IKALNVSNAAAVALYITQN 278
           E  GL  +       +  +        +   N+S+A  V +Y   N
Sbjct: 117 ENWGLSNEEIMKCDIICTIPTSPEYPIV---NISHAVGVIVYELAN 159


>gi|254426790|ref|ZP_05040497.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
 gi|196192959|gb|EDX87918.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
          Length = 260

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 25/152 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+   + P NIGA  R+        +   +  +       A+++ GA + +   ++ N 
Sbjct: 7   IVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQAYPSVEATARAS-GAGDVLEAAQVCNS 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-----------------PLEQEIKNDKIALILGAEGK 238
            D  + +       IG S+  ++                  L    +N +IA++ G E +
Sbjct: 66  VD--EALEGATL-VIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQNTRIAVLFGREDR 122

Query: 239 GLRPKTQETATSMAHLHMPG--IIKALNVSNA 268
           GL             +       +  LNV++A
Sbjct: 123 GLTNDELRRCNLHVSVPTNPEYGV--LNVASA 152


>gi|307132664|ref|YP_003884680.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
 gi|306530193|gb|ADN00124.1| RNA methyltransferase, TrmH family, group 1 [Dickeya dadantii 3937]
          Length = 233

 Score = 41.2 bits (96), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 24/161 (14%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP--SESAVLAKSASGALEHIPYI 190
           Q  ++L       N+GA  R+        +      +     +  +A  +   L+ +   
Sbjct: 2   QFYIILVAPARAENVGAAARAMKTMGFGRMRIVDSTAHLEPAARWVAHGSGDILDGVDVF 61

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAE 236
               L DAL  +      T+  ++ S+       +  ++              AL+ G E
Sbjct: 62  --PTLADALADIE----FTVATTARSRARFHYYCEPAQLLSVLKEKRQWVSSAALVFGRE 115

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
             GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 116 DSGLTNEELALADILTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|268324809|emb|CBH38397.1| putative tRNA/rRNA methyltransferase [uncultured archaeon]
          Length = 234

 Score = 41.2 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 21/157 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           ++L       N+GA+ R    F    +        +   +  K+ S A      ++   +
Sbjct: 5   IILVEPKSEENVGAVARVTKNFGFSDLYI-----VNPPEIGIKALSVAAHAYDVLQSCKI 59

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEI---------KNDKIA-------LILGAEGKG 239
            D+L    +      G ++       + +           DK+A       ++ G E  G
Sbjct: 60  VDSLPVAIANSAIVAGTTAKLGASTNKHLRMPFFLPLELKDKVAGKRGILSILFGREDVG 119

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           L     +    +  +        +N+S+A AV LY  
Sbjct: 120 LLNDELKLCDLVVSIPTSPEYPVMNLSHAVAVILYEL 156


>gi|330951486|gb|EGH51746.1| RNA methyltransferase [Pseudomonas syringae Cit 7]
          Length = 30

 Score = 41.2 bits (96), Expect = 0.17,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 260 IKALNVSNAAAVALYITQNHFA 281
           + +LNVS A  V L+      +
Sbjct: 1   VSSLNVSVATGVCLFEALRQRS 22


>gi|330508017|ref|YP_004384445.1| TrmH family RNA methyltransferase [Methanosaeta concilii GP-6]
 gi|328928825|gb|AEB68627.1| RNA methyltransferase, TrmH family, group 1 [Methanosaeta concilii
           GP-6]
          Length = 245

 Score = 41.2 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 45/159 (28%), Gaps = 39/159 (24%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G++ R+   F    +         +       A  +          + +   + +  
Sbjct: 14  GNVGSVARAMKNFGFHDLALVNPCKIEDYG----CAMASHARDVLQMSRSFSTLAEALEG 69

Query: 205 WGFQTIGLSS----DSKKPLE-------------QEIKNDK---IALILGAEGKGLRPKT 244
                +G +       +  L               E   DK   +AL+LG E  GL    
Sbjct: 70  ANL-VVGTTGKRLEHEQHHLRLHLRVPCLTPAGLAEKLRDKEGMVALLLGREDCGLNSDE 128

Query: 245 QETATSMAHLH-------MPGIIKALNVSNAAAVALYIT 276
                 +  +        M       N+S++AA+  Y  
Sbjct: 129 ISLCDMIVSIPTSEEYPVM-------NLSHSAAILFYEL 160


>gi|301155740|emb|CBW15208.1| predicted methyltransferase [Haemophilus parainfluenzae T3T1]
          Length = 239

 Score = 41.2 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 18/145 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           ++L   +   NIG+  R+        +      S  E ++    A+GA + +   + + +
Sbjct: 7   IILVETSHSGNIGSAARAMKTMGLSNLYLVSPKSVDEQSIAL--AAGADDLVRNAQIVDS 64

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPL--------EQEIKNDKIALILGAEGKGLRPK 243
              A++         IG S+     +  L        +      ++A++ G E  GL  +
Sbjct: 65  FEQAIEDCS----LVIGTSARLRHLQSTLIEPRECAEKACAYQGQVAIVFGRERVGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNA 268
                    ++       +LN++ A
Sbjct: 121 ELLKCHYHLNIPANPEYSSLNLAMA 145


>gi|218678289|ref|ZP_03526186.1| putative tRNA/rRNA aminotransferase/methyltransferase protein
           [Rhizobium etli CIAT 894]
          Length = 111

 Score = 41.2 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 32/110 (29%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
           + L + L   +   N G ILR A        +            L +S    +      R
Sbjct: 2   TDLRLALYQPDIAGNTGTILRLAACLDFAVDLIEPAGFDVSDRNLKRSGMDYIAAAALTR 61

Query: 192 ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
             N         + G + I  S+ +           K  L+ G E  G+ 
Sbjct: 62  HVNWDRFETWRATTGRRLILASTKAADRYTDFTFRPKDILLFGRESAGVP 111


>gi|332993001|gb|AEF03056.1| putative cold-shock RNA methyltransferase [Alteromonas sp. SN2]
          Length = 136

 Score = 41.2 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRP 242
            + IP I + +L + + +        + +   +   PL +    +    I G E   L  
Sbjct: 22  HKKIPTIGVDDLKEVVPE----NASVVAIELVEGALPLPEFKHPENAMYIFGPEDGSLDK 77

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
              E    + ++     +   N++  A V LY   +  AK
Sbjct: 78  SVLEWCDHVVYIPTYSCM---NLAATANVVLY---DRLAK 111


>gi|269213493|ref|ZP_05982089.2| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
           14685]
 gi|269146253|gb|EEZ72671.1| RNA methyltransferase, TrmH family, group 1 [Neisseria cinerea ATCC
           14685]
          Length = 330

 Score = 41.2 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 51/199 (25%)

Query: 119 APLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TK 166
            P L   LD +R     ++L   + P NIG+  R+        +                
Sbjct: 64  KPALPAYLDNIR-----IILTRTSHPANIGSAARAMKTMGLHKLTIVAPNLMATPMTENP 118

Query: 167 RYSPSESAVLAKS-------ASGALEHIPYIRIS-NLTDALQKMHSWGFQTIGLSSDSK- 217
                E     K        ASGA + +    I+ +L +AL         TI  +  S+ 
Sbjct: 119 PVFDPEHPQSFKLPEESFILASGAADVLENATIAASLDEALAD------TTIACALTSRR 172

Query: 218 ---------------KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK- 261
                          + L+   + +K+ L+ G E  GL  +  +    +  +   G    
Sbjct: 173 REITAPLQTPRDLVPELLQAANRGEKVTLVFGNETFGLSIEEVQACNRLMTI--NGNPDY 230

Query: 262 -ALNVSNAAAVALYITQNH 279
            +LN++ A  V  Y   + 
Sbjct: 231 FSLNLAQAVQVVCYEIFSQ 249


>gi|261363634|ref|ZP_05976517.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
           25996]
 gi|288568164|gb|EFC89724.1| RNA methyltransferase, TrmH family, group 1 [Neisseria mucosa ATCC
           25996]
          Length = 271

 Score = 41.2 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 220 LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQ 277
           L+   + +++AL+ G E  GL  +  +    +  +   G     +LN++ A  V  Y   
Sbjct: 131 LQAAQRGEQVALVFGNETFGLSIEEVQACNRLMTI--NGNPDYFSLNLAQAVQVVCYEIF 188

Query: 278 NH 279
           + 
Sbjct: 189 SQ 190


>gi|167044726|gb|ABZ09396.1| putative SpoU rRNA methylase family protein [uncultured marine
           microorganism HF4000_APKG7N23]
          Length = 209

 Score = 41.2 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 13/133 (9%)

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  D +   K     +       +   +      R   L +AL         T G+  + 
Sbjct: 4   FGIDDLALVKGCEIDDDGYARSKSGKPILE-NLSRFDTLEEALADCDVA-IATSGIKPEG 61

Query: 217 KKPLEQEIKN-----------DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNV 265
            K   +  K+           +K ALI G E  GL             +        LN+
Sbjct: 62  DKRWFRAPKSIKELPDLIKEREKPALIFGRENYGLYRGELALCEVTITIPTNPKFPILNL 121

Query: 266 SNAAAVALYITQN 278
           S+A  + LY    
Sbjct: 122 SHAVGIVLYEIYR 134


>gi|323159303|gb|EFZ45289.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase trmJ domain protein
           [Escherichia coli E128010]
          Length = 148

 Score = 41.2 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           E  N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 5   EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 59


>gi|251788172|ref|YP_003002893.1| putative RNA methyltransferase [Dickeya zeae Ech1591]
 gi|247536793|gb|ACT05414.1| RNA methyltransferase, TrmH family, group 1 [Dickeya zeae Ech1591]
          Length = 233

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 22/160 (13%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           Q  ++L       N+GA  R+        +      +          A G+ + +    +
Sbjct: 2   QFYIILVAPARAENVGAAARAMKTMGFGRLRIVDSTA-HLEPAARWVAHGSGDILDGAEV 60

Query: 193 -SNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI--------------ALILGAEG 237
              LTDAL  +      T+  ++ S+          ++              AL+ G E 
Sbjct: 61  FPTLTDALADVE----FTVATTARSRARFHYYCSPAQLLGVLEEKRQWVKSAALVFGRED 116

Query: 238 KGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 117 SGLTNEELALADILTGVPMAADYPSLNLGQA--VMVYCYQ 154


>gi|269214401|ref|ZP_05986486.2| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
           ATCC 23970]
 gi|269209997|gb|EEZ76452.1| RNA methyltransferase, TrmH family, group 1 [Neisseria lactamica
           ATCC 23970]
          Length = 238

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 220 LEQEIKNDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYIT 276
           L+   + +++AL+ G E  GL   + +     +  +   G     +LN++ A  V  Y  
Sbjct: 97  LQAAQRGEQVALVFGNETFGLSIEEVRA-CNRLMTI--NGNPDYFSLNLAQAVQVVCYEI 153

Query: 277 QNH 279
            + 
Sbjct: 154 FSQ 156


>gi|254464114|ref|ZP_05077525.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
           bacterium Y4I]
 gi|206685022|gb|EDZ45504.1| RNA methyltransferase, TrmH family, group 1 [Rhodobacterales
           bacterium Y4I]
          Length = 250

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 15/147 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKM-- 202
           NIGA  R+   F  D +          +      +SGA   +   +  +++ +AL     
Sbjct: 20  NIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRLLDEAQLCADVPEALGDCTY 79

Query: 203 ------HSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                    G      S +    +  E+    +K+A++ G E  GL  +    A ++  +
Sbjct: 80  VFATTARQRGLTKPVYSPERAMQIAAEKIAAGEKVAVMFGPERAGLENEDIAKANAIISV 139

Query: 255 HMPGIIKALNVSNAAAVAL--YITQNH 279
            +  +  +LN+     V L  Y     
Sbjct: 140 PVNPLYASLNLGQC--VLLTGYEWMRQ 164


>gi|296534805|ref|ZP_06897156.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
 gi|296264869|gb|EFH11143.1| RNA methyltransferase [Roseomonas cervicalis ATCC 49957]
          Length = 278

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 16/169 (9%)

Query: 124 PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
             L  +     ++VL       NIG+  R+        +                 +SGA
Sbjct: 8   ADLKPMPGESPIIVLVRPQLAENIGSTARAMANGGLFHLRLVAPRDGWPQERAWYVSSGA 67

Query: 184 LEHIPYIRISNL-TDALQKMHSWGFQT----------IGLSSDSKKPLEQEIKNDKI--A 230
              +    +     DA+   H   F T          +  +  + + L    +   +  A
Sbjct: 68  QRILDAATVHETVADAVADCH-RVFATCPRPRHVVIPVCTARGAAEELVDICQTRALRSA 126

Query: 231 LILGAEGKGLRPKTQETATSMAHLHM-PGIIKALNVSNAAAVALYITQN 278
           ++ G E  GL       A ++    + P  + +LN++ A  +  Y   N
Sbjct: 127 VLFGPERAGLENDDMACADTLVRYPLNPDHM-SLNLAQAVMILAYEWWN 174


>gi|294670969|ref|ZP_06735825.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307456|gb|EFE48699.1| hypothetical protein NEIELOOT_02675 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 272

 Score = 40.8 bits (95), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 46/182 (25%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIIT------------TKRYSPSESAVLAKS---- 179
           +VL   + P NIG+  R+        +                      +    K     
Sbjct: 17  IVLTRTSHPGNIGSAARAMKTMGLTKLTLVAPNLMQTPMTAEPPVFDPANPQAFKLPEES 76

Query: 180 ---ASGALEHIPYIR-ISNLTDALQKMHSWGFQTIGLSSDSKK-PLEQEIKNDK------ 228
              ASGA + +   R  + L +AL          +  +  S++  L  E++  +      
Sbjct: 77  FILASGAADVLENARICATLEEALAD------TVLSCALTSRRRELTAELQTPRALTPEL 130

Query: 229 ---------IALILGAEGKGLRPKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQ 277
                     AL+ G E  GL  +  +    +  +   G     +LN++ A  V  Y   
Sbjct: 131 LSAAEAEQQTALVFGNETYGLSIEEVQACNRLMTI--NGNPDYFSLNLAQAVQVVCYEIY 188

Query: 278 NH 279
           + 
Sbjct: 189 SQ 190


>gi|145640333|ref|ZP_01795917.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           R3021]
 gi|145274919|gb|EDK14781.1| hypothetical tRNA/rRNA methyltransferase [Haemophilus influenzae
           22.4-21]
          Length = 205

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN- 194
           +VL   +   NIG+  R+        +      S  E +     ++GA + +    I N 
Sbjct: 7   IVLIETSHSGNIGSAARAMKTMGLTQLCLVSPKSIDEQSYAL--SAGAEDIVKNAMIVNS 64

Query: 195 LTDALQKMHSWGFQTIGLSSDSK-------KPLEQEIK----NDKIALILGAEGKGLRPK 243
             DA++         IG S+  +       +P E   K      KIA++ G E  GL  +
Sbjct: 65  FDDAVKNCS----LVIGTSARLRHLQNTLIEPRECADKVIAHKGKIAIVFGRERIGLTNE 120

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 121 ELLKCHYHLNIPANPDYSSLNLAMAVQLVSYELRMAF 157


>gi|114766189|ref|ZP_01445189.1| RNA methyltransferase, TrmH family, group 1 [Pelagibaca bermudensis
           HTCC2601]
 gi|114541560|gb|EAU44603.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           HTCC2601]
          Length = 247

 Score = 40.8 bits (95), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 17/164 (10%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            V+    ++V        NIGA  R+   F  D +          +      ASGA   +
Sbjct: 4   DVKQPAFVLV--RPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPSSVAMASGAGRLL 61

Query: 188 PYIRISNLTD---------ALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAE 236
               +S                     G            +   E+  +  ++A++ G E
Sbjct: 62  DDAVLSEDVAGAVGDCDLVFATTARQRGMTKPVYSPEEAMRAAAERIAQGGRVAVMFGPE 121

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
             GL       A ++  + +     +LN++    V L  Y  + 
Sbjct: 122 RAGLENADVAQANAIISVPVNPEFPSLNLAQC--VLLCGYEWRR 163


>gi|220924676|ref|YP_002499978.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           nodulans ORS 2060]
 gi|219949283|gb|ACL59675.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium
           nodulans ORS 2060]
          Length = 248

 Score = 40.8 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 58/164 (35%), Gaps = 23/164 (14%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            + +++L       NIG   R+   F    +             + ++ASGA   +    
Sbjct: 7   PRPVIILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDGAT 66

Query: 192 -ISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------------KNDKIALILGAE 236
             + + +A+  +H      +  ++  +  +++ +                +++ ++ G E
Sbjct: 67  IHATVAEAIGDLH----HVLATTARERGQMKRVMGPDAAMQAVVGRLSAGERVGILFGRE 122

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
             GL       A ++    +     +LN++   +V L  Y  + 
Sbjct: 123 RVGLSNDEVSLADAIVTFPVDPKHPSLNLAQ--SVLLVAYEWRR 164


>gi|323955197|gb|EGB50970.1| RNA methyltransferase [Escherichia coli H263]
          Length = 228

 Score = 40.8 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 18/158 (11%)

Query: 133 QLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI 192
           ++ ++L       NIGA  R+        +            V    A G+ + I  I++
Sbjct: 2   RITIILVAPARAENIGAAARAMKTMGFSELRIVD-SQAHLEPVARWVAHGSGDIIDNIKV 60

Query: 193 SNLTDALQKMHSWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKG 239
                  + +H   F     +    K            +  +K       AL+ G E  G
Sbjct: 61  --FKTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKSSWMSHAALVFGREDSG 118

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           L  +    A  +  + M     + N+  A  V +Y  Q
Sbjct: 119 LTNEELALADVLTGVPMVADYPSFNLGQA--VMVYCYQ 154


>gi|288932154|ref|YP_003436214.1| hypothetical protein Ferp_1796 [Ferroglobus placidus DSM 10642]
 gi|288894402|gb|ADC65939.1| protein of unknown function DUF127 [Ferroglobus placidus DSM 10642]
          Length = 173

 Score = 40.8 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 14/124 (11%)

Query: 153 SAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +A AF   GI   K           + K   G       I  +N    L++         
Sbjct: 25  TARAFGARGIYFDKYDEKVFESVRDVVKRWGGDFF----IEHANWKKLLKEFRGAKVHLT 80

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA- 269
                  + +++  K +KI +I+GAE   +  +  E A     +      +      AA 
Sbjct: 81  MYGIPLLEKIDELKKEEKILVIVGAEK--VPSEVYELADYNISIGTQPHSE-----VAAL 133

Query: 270 AVAL 273
           AV L
Sbjct: 134 AVFL 137


>gi|260770421|ref|ZP_05879354.1| rRNA methylase [Vibrio furnissii CIP 102972]
 gi|260615759|gb|EEX40945.1| rRNA methylase [Vibrio furnissii CIP 102972]
 gi|315181492|gb|ADT88405.1| 23S rRNA methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 172

 Score = 40.8 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 12/153 (7%)

Query: 131 NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI 190
            S +++ L +   P N+GA++R+A  ++   +        + +         +   I  +
Sbjct: 4   QSTVIIGLSNPKSPTNVGAVMRAAGCYNATQVRYNGTRY-NRAVKFQTDTHNSKARIALV 62

Query: 191 RISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            + +LT  L    +   + + +        L Q +       + G E   L     + A 
Sbjct: 63  EMEDLTADL----APDVEIVCVELVVGATALPQFVHPQNAIYLFGPEDGSLPQDVVDQAH 118

Query: 250 SMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            + ++   G +   N++    V +Y   +  AK
Sbjct: 119 HVVYVPTNGCM---NLAATVNVVMY---DRLAK 145


>gi|260427916|ref|ZP_05781895.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
 gi|260422408|gb|EEX15659.1| RNA methyltransferase, TrmH family [Citreicella sp. SE45]
          Length = 247

 Score = 40.8 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 17/164 (10%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHI 187
            V+    ++V        NIGA  R+   F  D +          +      ASGA   +
Sbjct: 4   DVKQPAFVLV--RPQMGENIGAAARAMWNFGLDRMRLVSPRDGWPNPASVAMASGAGRLL 61

Query: 188 PYIRISNLTD---------ALQKMHSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAE 236
               +S                     G            ++   +     ++A++ G E
Sbjct: 62  DDAVLSEDVAGAVGDCDLIFATTARQRGMTKPVYSPEEAMREAASRIAAGGRVAVMFGPE 121

Query: 237 GKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQN 278
             GL       A ++  + +     +LN++    V L  Y  + 
Sbjct: 122 RAGLENADVAQANAIISVPVNPEFPSLNLAQC--VLLCGYEWRR 163


>gi|218132402|ref|ZP_03461206.1| hypothetical protein BACPEC_00261 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992740|gb|EEC58742.1| hypothetical protein BACPEC_00261 [Bacteroides pectinophilus ATCC
           43243]
          Length = 479

 Score = 40.8 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 10  EKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHT-VSAALNNPSRKI 68
           E I S        +RR+  D+      + K      P++  + G++  V AA+ N + K+
Sbjct: 225 ETIASYDPKDSTSIRRDDYDFTSALVDDVKGMKIGIPKDYLIEGLNPEVKAAIMNAAHKL 284

Query: 69  FQLLATKNALARLDWDANLPHPFPVKTV 96
            +    K A+      + + +  P   V
Sbjct: 285 EE----KGAVVEEFDLSLVEYAIPAYYV 308


>gi|124027746|ref|YP_001013065.1| hypothetical protein Hbut_0870 [Hyperthermus butylicus DSM 5456]
 gi|123978440|gb|ABM80721.1| hypothetical protein Hbut_0870 [Hyperthermus butylicus DSM 5456]
          Length = 154

 Score = 40.8 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
           + + ++ + ++   +  +  I L     K L +    +K ALI+GAE  G+     E   
Sbjct: 54  VFVDSVEEVVKLASADKY--IVLEVYGDKLLSEVEPAEKTALIIGAEDYGIPRTVLEKIP 111

Query: 250 S---MAHLHMPGIIK--ALNVSNAAAVA-LYITQN 278
               +  + +   ++  + NV  A+ V  LY  + 
Sbjct: 112 EPRDLVVIPV--GVEGMSYNV-VASLVMALYELKR 143


>gi|170740850|ref|YP_001769505.1| RNA methyltransferase [Methylobacterium sp. 4-46]
 gi|168195124|gb|ACA17071.1| RNA methyltransferase, TrmH family, group 1 [Methylobacterium sp.
           4-46]
          Length = 250

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 56/168 (33%), Gaps = 31/168 (18%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            +  ++L       NIG   R+   F    +             + ++ASGA   +    
Sbjct: 6   PRPAVILVEPQLAENIGMTARAMANFGLSELRLVAPKGGWPKKGVRETASGATHVLDGAT 65

Query: 192 -ISNLTDALQKMHSWGFQTIGLSSDSK--------------KPLEQEIKNDKIALILGAE 236
             + + +A+  +H      +  ++  +                + ++   +++ ++ G E
Sbjct: 66  IHATVAEAIGDLH----HVLATTARERGQMKRVMGPDEAMGSVVARQAAGERVGILFGRE 121

Query: 237 GKGLRPKTQETATSMAHLHMPGIIK----ALNVSNAAAVAL--YITQN 278
             GL       A ++        +     +LN++   +V L  Y  + 
Sbjct: 122 RVGLSNDEVSLADAIVTFP----VDPRHASLNLAQ--SVLLVAYEWRR 163


>gi|15602181|ref|NP_245253.1| hypothetical protein PM0316 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720552|gb|AAK02400.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 238

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL   +   NIG+  R+      + +       P +   +A  ++GA + +   + +++
Sbjct: 7   IVLVETSHSGNIGSAARAMKTMGLNQLYLVAPKQPLDEHAIA-LSAGAEDVLKQAKIVAS 65

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ----------EIKNDKIALILGAEGKGLR 241
             +A+          IG S+     +  L +            K   +A++ G E  GL 
Sbjct: 66  FDEAVADCA----LVIGTSARLRHLQNSLIEPRECGTRAIAYAKQAPVAIVFGRERIGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +          +       +LN++ A  +  Y  +
Sbjct: 122 NEELLKCRYHLTIPANPDYSSLNLAMAVQLICYELR 157


>gi|306440754|pdb|3ONP|A Chain A, Crystal Structure Of TrnaRRNA METHYLTRANSFERASE SPOU FROM
           RHODOBACTER Sphaeroides
          Length = 249

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 52/160 (32%), Gaps = 19/160 (11%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RIS 193
           + +L       NIGA  R+ + F    +          +      ASGA   + +     
Sbjct: 6   VFILVRPQXGENIGAAARAXLNFGLGRLRIVDPRDGWPNPKAVAXASGAGRLLDHAGLFP 65

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKND--------------KIALILGAEGKG 239
            + +A++            ++  ++  +     +              ++ ++ G E  G
Sbjct: 66  TVAEAIRDCD----YVFATTARGRELTKPVXTPERAXAHGRALTGEGRRVGILFGPERTG 121

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L  +    A ++  + +     +LN++    +  Y  +  
Sbjct: 122 LENEDVALANAIVTVPVNPEFFSLNLAQCVLLLAYEWRRQ 161


>gi|254993163|ref|ZP_05275353.1| hypothetical protein LmonocytoFSL_09103 [Listeria monocytogenes FSL
           J2-064]
          Length = 47

 Score = 40.4 bits (94), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 253 HLHMPGIIKALNVSNAAAVALYITQNH 279
            + M   I++LN+SN AA+  Y     
Sbjct: 2   RIPMTDHIRSLNLSNTAAILAYEALRQ 28


>gi|296108917|ref|YP_003615866.1| protein of unknown function DUF127 [Methanocaldococcus infernus ME]
 gi|295433731|gb|ADG12902.1| protein of unknown function DUF127 [Methanocaldococcus infernus ME]
          Length = 174

 Score = 40.4 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A   + II T+         + K          +  + N    ++     G   + L
Sbjct: 25  TARALGAEEIIFTEE-DEHVRKSVEKIVKNWGGDFKFRVVKNWRSYIKDFKKDGI-VVHL 82

Query: 213 SSDSK---KPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           +   +   K +E+  K D I +I+GAE   +  +  E A     +
Sbjct: 83  TMYGERIDKAIEKIKKFDNILVIVGAEK--VPREVYELADFNVSI 125


>gi|332185344|ref|ZP_08387092.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
 gi|332014322|gb|EGI56379.1| spoU rRNA Methylase family protein [Sphingomonas sp. S17]
          Length = 243

 Score = 40.4 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 11/156 (7%)

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY 189
            +   ++VL       NIG   R+ + F    +          +     +ASGA   +  
Sbjct: 5   PSQPPVIVLVRPQLGENIGKAARAMLNFGLVEMRLVTPRDGWPNPQAGPAASGADIVLEQ 64

Query: 190 IRI-SNLTDALQKM--------HSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKG 239
            ++  ++ DA+              G  + +    ++ + +       + A + G E  G
Sbjct: 65  AKVYESVADAVADCAQVYATTVRKRGVTKPVVTPEEAAREIH-ADTVGRAAFLFGPERSG 123

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           L       A  +  + +     +LN++ A  +  Y 
Sbjct: 124 LETDDVAIARKIVTVPINPEFGSLNLAQAVILIAYE 159


>gi|258627176|ref|ZP_05721964.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
 gi|258580478|gb|EEW05439.1| RNA methyltransferase, TrmH family [Vibrio mimicus VM603]
          Length = 244

 Score = 40.4 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTSHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  L+  +                  +A++ G E  GL 
Sbjct: 64  FPTLEAAVADCGLVVGTSARSRT-LDWPMLEPPQCGEKLIAEASQHTVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +      ++       +LN++ A  +  Y  +
Sbjct: 123 NDELQLCHYHVYVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|85705325|ref|ZP_01036424.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
 gi|85670198|gb|EAQ25060.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp. 217]
          Length = 247

 Score = 40.4 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 15/146 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKM-- 202
           NIGA  R+   F  D +          +      ASGA   +     + +  DA+     
Sbjct: 20  NIGAAARAMWNFGLDRMRIVAPRDGWPNERAVAMASGAGRLLDEALLVESTADAVADCSF 79

Query: 203 ------HSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                  + G     LS +    L  E+    +K+A++ G E  GL       A ++ ++
Sbjct: 80  VLATTARARGLTKPVLSPERAMGLAAEKIAAGEKVAVLFGPERAGLENDDIARANAIINV 139

Query: 255 HMPGIIKALNVSNAAAVAL--YITQN 278
            +     +LN+     V L  Y  Q 
Sbjct: 140 PVNPEFASLNLGQC--VLLTAYEWQR 163


>gi|124485281|ref|YP_001029897.1| hypothetical protein Mlab_0456 [Methanocorpusculum labreanum Z]
 gi|224493369|sp|A2SQM4|TRM56_METLZ RecName: Full=tRNA ribose 2'-O-methyltransferase aTrm56
 gi|124362822|gb|ABN06630.1| protein of unknown function DUF127 [Methanocorpusculum labreanum Z]
          Length = 184

 Score = 40.4 bits (94), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 25/122 (20%)

Query: 153 SAVAFSCDGIITTKR---YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           S+ A    G+         + S + V  +   G                + +    G + 
Sbjct: 29  SSRALGASGMYLAADDAKVADSITDVATRF-GGTFF---CENNVKWKSCINQFKKSGGKV 84

Query: 210 IGLSSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
           + L+      +  +    K +K+ +++GAE   +     E A               NV+
Sbjct: 85  VHLTMYGLRLQDVIADIRKEEKVMIVVGAEK--VPGDLYELADY-------------NVA 129

Query: 267 NA 268
            A
Sbjct: 130 VA 131


>gi|256255516|ref|ZP_05461052.1| hypothetical protein BcetB_14773 [Brucella ceti B1/94]
          Length = 26

 Score = 40.4 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)

Query: 255 HMPGIIKALNVSNAAAVALYITQNHFAK 282
            M     +LNV+ A+ +AL    + F+K
Sbjct: 1   PMSKTFDSLNVATASGIAL----SRFSK 24


>gi|238921055|ref|YP_002934570.1| hypothetical protein NT01EI_3185 [Edwardsiella ictaluri 93-146]
 gi|238870624|gb|ACR70335.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 245

 Score = 40.4 bits (94), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ-----NHFAK 282
            +A++ G E  GL     +       +       +LN++ A  +  Y  +        AK
Sbjct: 108 PVAIVFGRERVGLTNDELQKCHYHVQIPANPEYTSLNLAMAVQILSYEIRVAHLDRQAAK 167


>gi|257453749|ref|ZP_05619030.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
           SK60]
 gi|257448841|gb|EEV23803.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ (tRNA
           Cm32/Um32 methyltransferase) [Enhydrobacter aerosaccus
           SK60]
          Length = 278

 Score = 40.4 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 41/192 (21%)

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLA 177
            +P    +L A   + + +V+ +   P NIG+  R+        +       P +    A
Sbjct: 8   ASPQPFSSLAAFL-AGIRIVMVNTTLPANIGSAARAMHTMGLTQLTVVAPKLPIDEDAYA 66

Query: 178 KSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSD---------------------- 215
            +A              L  ALQ  H      I  SS                       
Sbjct: 67  HAAGAKAILDAVTICDTLEQALQDCH----WVIATSSRQRHIPRPVLSPRQAAELMVTNF 122

Query: 216 ---SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHM---PGIIKALNVSNA- 268
                   +   +N ++A++ G E +GL  +  + A     +      G+   LNV+ A 
Sbjct: 123 HNLGDLMTDAAHRNWQLAIVFGREDRGLTNEELQLADYHIQIPANAEYGV---LNVAAAV 179

Query: 269 ---AAVALYITQ 277
              A+V  Y T 
Sbjct: 180 QVIASV-FYETA 190


>gi|213863204|ref|ZP_03386459.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 80

 Score = 40.4 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 223 EIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           E  N  +AL+ G E  GL  +  +       +       +LN++ A  V  Y  +
Sbjct: 7   EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVR 61


>gi|326626277|gb|EGE32622.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 203

 Score = 40.4 bits (94), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 20/129 (15%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ ++ +    +  +A  +   +++I   R   L DA   +H   F     +    K   
Sbjct: 8   IVDSQAHLEPATRWVAHGSGDIIDNIEVFRT--LADA---LHDVDFTVATTACSRAKFHY 62

Query: 222 QEIKND--KI-----------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                +   +           AL+ G E  GL       A  +  + M     +LN+  A
Sbjct: 63  YASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQA 122

Query: 269 AAVALYITQ 277
             V +Y  Q
Sbjct: 123 --VMVYCYQ 129


>gi|110834589|ref|YP_693448.1| putative RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110647700|emb|CAL17176.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
           borkumensis SK2]
          Length = 223

 Score = 40.4 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++A++ G E  GL           + + +     +LN++ A  V +Y 
Sbjct: 104 QRVAIVFGREASGLTGDELGLCDLASSIPLAQQQPSLNLAQA--VMIYA 150


>gi|308048484|ref|YP_003912050.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
 gi|307630674|gb|ADN74976.1| RNA methyltransferase, TrmH family, group 1 [Ferrimonas balearica
           DSM 9799]
          Length = 226

 Score = 40.4 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 229 IALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           +A++ G E  GL  +       +  + +     +LN+  A  + LY 
Sbjct: 109 VAVVFGCEESGLSNEDLALVDLLTTIPLVNPYPSLNLGQA--IMLYA 153


>gi|257097728|pdb|3ILK|A Chain A, The Structure Of A Probable Methylase Family Protein From
           Haemophilus Influenzae Rd Kw20
 gi|257097729|pdb|3ILK|B Chain B, The Structure Of A Probable Methylase Family Protein From
           Haemophilus Influenzae Rd Kw20
          Length = 244

 Score = 40.4 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SN 194
           +VL   +   NIG+  R+        +      S  E +     ++GA   +   R+  +
Sbjct: 10  IVLIETSHSGNIGSAARAXKTXGLTQLCLVSPKSVDEQSYAL--SAGAENIVKNARVVDS 67

Query: 195 LTDALQKMHSWGFQTIGLSS---DSKKPLEQ--------EIKNDKIALILGAEGKGLRPK 243
             +A+          IG S+     +  L +             KIA++ G E  GL  +
Sbjct: 68  FDEAVDDCS----LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNE 123

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
                    ++       +LN++ A  +  Y  +  F
Sbjct: 124 ELLKCHYHLNIPANPDYSSLNLAXAVQLVSYELRXAF 160


>gi|325579031|ref|ZP_08148987.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159266|gb|EGC71400.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 239

 Score = 40.0 bits (93), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 16/144 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        +      S  E ++    A+GA      +R +++
Sbjct: 7   IVLVETSHSGNIGSAARAMKTMGLSNLYLVSPKSVDEQSIAL--AAGAD---DVMRNAHI 61

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK-----------IALILGAEGKGLRPKT 244
            D  ++        IG S+  +      I   K           +A++ G E  GL  + 
Sbjct: 62  VDTFEQAIEDCSLVIGTSARLRHLQSTLIDPRKCAEKASAHQGQVAIVFGRERVGLTNEE 121

Query: 245 QETATSMAHLHMPGIIKALNVSNA 268
                   ++       +LN++ A
Sbjct: 122 LLKCHYHLNIPANPEYSSLNLAMA 145


>gi|91792898|ref|YP_562549.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217]
 gi|91714900|gb|ABE54826.1| tRNA/rRNA methyltransferase (SpoU) [Shewanella denitrificans OS217]
          Length = 200

 Score = 40.0 bits (93), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 17/157 (10%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY---SPSESAVLAKS-ASGALEHI 187
           S +++ L +   P N+G I+R+A  +  D +  T R    +              A + I
Sbjct: 25  SSVIIGLVNPKTPVNVGGIMRAAGCYRVDSVCYTGRRYELAAKSGDAQYDVDTKDAAKTI 84

Query: 188 PYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-LRPKTQ 245
           P   + +L D +      G + I +       PL   +  +    I G E  G +     
Sbjct: 85  PLTGVESLLDQVPV----GAKIICVDLVVGATPLPHFVHPEHAFYIFGPE-DGTIPQVLI 139

Query: 246 ETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
           + A  + ++   G +   N++ +  V LY   +  AK
Sbjct: 140 DAAHEVVYVPTVGCM---NLAASVNVLLY---DRLAK 170


>gi|21227939|ref|NP_633861.1| RNA methylase [Methanosarcina mazei Go1]
 gi|20906361|gb|AAM31533.1| RNA methylase [Methanosarcina mazei Go1]
          Length = 259

 Score = 40.0 bits (93), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 29/152 (19%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQ--- 200
            N+G++ R+   F    ++                +S A + +   R +S L +A++   
Sbjct: 23  GNVGSVARAMKNFGYSDLVLMNPC--ELEGQARAMSSHARDVLEGARIVSTLEEAVKGAD 80

Query: 201 -KMHSWGFQTIGLSSDSKKPLEQEIK--------NDKIALILGAEGKGLRPKTQETATSM 251
             + + G  ++      + PL    +        +  IAL+ G E  G      +    +
Sbjct: 81  LLIGTTGVSSLKTGEHIRLPLYTVKEVREKLKGCSGTIALLFGREDNGFSNDELKGFDML 140

Query: 252 AHLH-------MPGIIKALNVSNAAAVALYIT 276
             +        M       N+S+A A+ LY  
Sbjct: 141 VTVPTSEIYPIM-------NLSHAVAIVLYEL 165


>gi|326570852|gb|EGE20876.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC7]
          Length = 294

 Score = 40.0 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 13/127 (10%)

Query: 154 AVAFSCDGIITTKRY------SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           A A    GI+  K        +      L  +AS     +P   ++    A   +     
Sbjct: 56  ANAAGA-GILLDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQ 114

Query: 208 QT----IGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIK 261
                 +  S D  ++   +      KIA++ G E +GL  +    A     +       
Sbjct: 115 TVSKNNLATSLDHMNQSADDLVDTLPKIAILFGREDRGLTNEELSLADYHIQIPANPDYP 174

Query: 262 ALNVSNA 268
            LNV++A
Sbjct: 175 VLNVASA 181


>gi|238021057|ref|ZP_04601483.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
 gi|237868037|gb|EEP69043.1| hypothetical protein GCWU000324_00954 [Kingella oralis ATCC 51147]
          Length = 266

 Score = 40.0 bits (93), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 226 NDKIALILGAEGKGLR-PKTQETATSMAHLHMPGIIK--ALNVSNAAAVALYITQNHFA 281
             +IAL+ G E  GL   +  +    +  +   G     +LN++ A  V  Y   +H  
Sbjct: 133 GQQIALVFGNETYGLSIDEV-QQCNRLMTI--SGNPDYFSLNLAQAVQVVCYELFSHVN 188


>gi|113460425|ref|YP_718487.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|170717774|ref|YP_001783505.1| RNA methyltransferase [Haemophilus somnus 2336]
 gi|112822468|gb|ABI24557.1| possible tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gi|168825903|gb|ACA31274.1| RNA methyltransferase, TrmH family, group 1 [Haemophilus somnus
           2336]
          Length = 246

 Score = 40.0 bits (93), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 18/117 (15%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSAS--GALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           A+A   + ++ +   + S S  +A  +   G    + +     L   L +      + I 
Sbjct: 48  ALAAGAEDVVKSAVVADSFSQAVADCSLIIGTSARLRH-----LQSTLIEPRECAEKVI- 101

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                     Q + + K+A++ G E  GL             +       +LN++ A
Sbjct: 102 ----------QSLSSQKVAIVFGRERVGLTNDELLKCHYHLTIPANPEYSSLNLAMA 148


>gi|149190103|ref|ZP_01868380.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
 gi|148836133|gb|EDL53093.1| RNA methyltransferase, TrmH family protein [Vibrio shilonii AK1]
          Length = 217

 Score = 40.0 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
            +AL+ G E  GL  +  +       +       +LN++ A
Sbjct: 82  PVALVFGRERTGLTNEELQLCHFHTCIPANPEYSSLNLAMA 122


>gi|294084245|ref|YP_003551003.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663818|gb|ADE38919.1| RNA methyltransferase TrmH, group 1 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 256

 Score = 40.0 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 10/153 (6%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIGA  R+ +      +   K      + V    A+G    I   ++  
Sbjct: 13  VVILARPQMAENIGATARAMMNCGLRDLRIVKPRDGWPNPVALPMAAGGKSIIETAQVFD 72

Query: 194 NLTDA--------LQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKIALILGAEGKGLRPKT 244
            L DA                         +    L Q+ K  ++AL+ G E  GL    
Sbjct: 73  TLADATHDICFMAAATARQRDMPIRASEPRAIGSELVQKAKKGRVALLFGPEASGLDNNE 132

Query: 245 QETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              A       +     +LN++ A  +  +  +
Sbjct: 133 VVLADVAVSAALNPAYPSLNLAQAVLLLAWEWR 165


>gi|327401460|ref|YP_004342299.1| tRNA ribose 2'-O-methyltransferase aTrm56 [Archaeoglobus veneficus
           SNP6]
 gi|327316968|gb|AEA47584.1| tRNA ribose 2'-O-methyltransferase aTrm56 [Archaeoglobus veneficus
           SNP6]
          Length = 170

 Score = 40.0 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 153 SAVAFSCDGII--TTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +A AF   GI   T  R        + +   G       +   N    L++         
Sbjct: 26  TARAFGAKGIYFDTYDRKVFESVRDVVRRWGGEFF----VEECNWKKLLKEFDGLKVHLT 81

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA- 269
                  + ++   K +K+  I+GAE   + P+  E A     +      +      AA 
Sbjct: 82  MYGVPLPEKIDDIKKVEKVLAIVGAEK--VPPEVYELADMNVSIGTQPHSE-----VAAL 134

Query: 270 AVAL 273
           AV L
Sbjct: 135 AVFL 138


>gi|302348986|ref|YP_003816624.1| hypothetical protein ASAC_1188 [Acidilobus saccharovorans 345-15]
 gi|302329398|gb|ADL19593.1| hypothetical protein ASAC_1188 [Acidilobus saccharovorans 345-15]
          Length = 277

 Score = 40.0 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 179 SASGALEH-IPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE--QEIKNDKIALILG 234
           S+ G +      +R   L   LQ++   G   +G S          + +    IAL+LG
Sbjct: 170 SSWGNIYTGYKVLRSGKLLTELQELKEQGVALVGTSKYGSTDYWLLRGLLGRPIALVLG 228


>gi|119774888|ref|YP_927628.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
 gi|119767388|gb|ABL99958.1| putative RNA methyltransferase [Shewanella amazonensis SB2B]
          Length = 225

 Score = 39.6 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
             +AL+ G E  GL  +        +++ + G   +LN+  A
Sbjct: 103 QSMALVFGRESSGLSNQELSQCDLFSYVPLAGDYPSLNLGQA 144


>gi|110833374|ref|YP_692233.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|110646485|emb|CAL15961.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax
           borkumensis SK2]
          Length = 261

 Score = 39.6 bits (92), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 25/152 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+   + P NIGA  R+        +   +  S       A+++ GA + +   ++ N 
Sbjct: 7   IVMVETSHPGNIGAAARAMKTMGLSDLRLVQPQSYPSVEATARAS-GAGDVLEAAQVCNS 65

Query: 196 TDALQKMHSWGFQTIGLSSDSKK-----------------PLEQEIKNDKIALILGAEGK 238
            D  + +       IG S+  ++                  L    ++ +IA++ G E +
Sbjct: 66  VD--EALEGATL-VIGTSARQRRIPWPCLTPRQLAAQLSHDLANAPQDTRIAVLFGREDR 122

Query: 239 GLRPKTQETATSMAHLHMPG--IIKALNVSNA 268
           GL             +       +  LNV++A
Sbjct: 123 GLTNDELRRCNLHVSVPANPEYGV--LNVASA 152


>gi|149204047|ref|ZP_01881015.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           TM1035]
 gi|149142489|gb|EDM30534.1| RNA methyltransferase, TrmH family, group 1 [Roseovarius sp.
           TM1035]
          Length = 247

 Score = 39.6 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQKM-- 202
           NIGA  R+   F  D +          +      ASGA   +     +++   A+     
Sbjct: 20  NIGAAARAMWNFGLDRMRLVAPRDGWPNPKADAMASGAGRLLDEALLVADTAAAVGDCTY 79

Query: 203 ------HSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                  + G     LS +    +  E+    +K+A++ G E  GL       A ++ ++
Sbjct: 80  VLATTARARGLTKPVLSPERAMVVAAEKIAAGEKVAVLFGPERAGLENDDIARANAIINV 139

Query: 255 HMPGIIKALNVSNAAAVALYITQN 278
            +     +LN+     +  Y  Q 
Sbjct: 140 PVNPEFASLNLGQCVLLMAYEWQR 163


>gi|89054924|ref|YP_510375.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
 gi|88864473|gb|ABD55350.1| tRNA/rRNA methyltransferase (SpoU) [Jannaschia sp. CCS1]
          Length = 258

 Score = 39.6 bits (92), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 11/145 (7%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYI-RISNLTDALQKM-- 202
           NIGA  R+   F  D +          +      ASGA   +       +L  AL     
Sbjct: 27  NIGAAARAMWNFGLDRMRVVDPRDGWPNERAVALASGAGRLLDNAGLYQDLPGALSDCTY 86

Query: 203 ------HSWGFQ--TIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                    G     +      ++      +  K+ ++ G E  GL       A ++  +
Sbjct: 87  VFATTARDRGLTKPIVTPERAMEQTRAILAEGGKVGVLFGPERAGLENADIAPADAIISV 146

Query: 255 HMPGIIKALNVSNAAAVALYITQNH 279
            +     +LN++    +  Y  Q  
Sbjct: 147 DVNPAFPSLNLAQCVLLCAYEWQRQ 171


>gi|332158733|ref|YP_004424012.1| tRNA 2'-O-methylase [Pyrococcus sp. NA2]
 gi|331034196|gb|AEC52008.1| tRNA 2'-O-methylase [Pyrococcus sp. NA2]
          Length = 197

 Score = 39.6 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209
           +A AF  DGII +          +                 N    +++    G +    
Sbjct: 24  TARAFGADGIIISGEEDEKVIESVEDVVRRWGGPFFIEFERNWRKVIKEF--NGIKVHLT 81

Query: 210 -IGLSSDSK-KPLEQEIKNDK-IALILGAEGKGLRPKTQETATSMAHL 254
             GL  D   + L +++K  K   +I+GAE   +  +  + A     +
Sbjct: 82  MYGLHVDDVMEELRRKLKEGKDFLIIVGAEK--VPREVYDLADYNVAI 127


>gi|251792921|ref|YP_003007647.1| TrmH family RNA methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534314|gb|ACS97560.1| RNA methyltransferase, TrmH family, group 1 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 244

 Score = 39.6 bits (92), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 190 IRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETAT 249
            R+ +L ++L +    G +T+  +            N K+A++ G E  GL  +      
Sbjct: 81  ARLRHLQNSLIEPRECGTKTVAHAM-----------NGKVAIVFGRERVGLTNEELLKCH 129

Query: 250 SMAHLHMPGIIKALNVSNA 268
               +       +LN++ A
Sbjct: 130 YHVTIPANPDYASLNLAMA 148


>gi|56552099|ref|YP_162938.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241762049|ref|ZP_04760133.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752372|ref|YP_003225265.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|56543673|gb|AAV89827.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241373515|gb|EER63102.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258551735|gb|ACV74681.1| RNA methyltransferase, TrmH family, group 1 [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 243

 Score = 39.6 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 12/140 (8%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKM-- 202
           NIG   R+ + F  D +          +     +ASGA   +   R+   + +A+     
Sbjct: 18  NIGKAARAMLNFGLDDLRLVAPRDGWPNPSAGPAASGADRVLQQARVFPTVAEAVADCAH 77

Query: 203 ------HSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH 255
                    G  + +     + + + ++     + ++ G E  GL       A ++  + 
Sbjct: 78  VYATTVRKRGVTKPVMTPEQAAQTIHEQ--EGGVGILFGPERAGLETDDVALARTIITVP 135

Query: 256 MPGIIKALNVSNAAAVALYI 275
           +     +LN++ A  +  Y 
Sbjct: 136 VNPEFSSLNLAQAVILVAYE 155


>gi|94497531|ref|ZP_01304100.1| rRNA methylase [Sphingomonas sp. SKA58]
 gi|94422948|gb|EAT07980.1| rRNA methylase [Sphingomonas sp. SKA58]
          Length = 357

 Score = 39.6 bits (92), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 12/167 (7%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           +  ++ +     ++VL       NIG   R+ + F    +          +     +A+G
Sbjct: 113 AANIETMPTPTPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVSPRDGWPNPDAGPAAAG 172

Query: 183 ALEHIPYIRI-SNLTDALQKM--------HSWGF-QTIGLSSDSKKPLEQEIKNDKIALI 232
           A   +   ++   L DA+              G  + +    ++ + +       + A +
Sbjct: 173 ADVVLDGAQVYETLADAVADCAHVYATTVRKRGVTKPVVTPEEAAREIHGA--TGRSAFV 230

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
            G E  GL       A  +  + +     +LN++ A  +  Y     
Sbjct: 231 FGPERSGLETDDVALARKILTVPINPDFGSLNLAQAVILCAYEWSKQ 277


>gi|289577763|ref|YP_003476390.1| PTS system, fructose subfamily, IIC subunit [Thermoanaerobacter
           italicus Ab9]
 gi|289527476|gb|ADD01828.1| PTS system, fructose subfamily, IIC subunit [Thermoanaerobacter
           italicus Ab9]
          Length = 350

 Score = 39.6 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 35/138 (25%)

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY------IRISNLTDALQ 200
           +GAI+ +   F   G +    Y+          A GA    PY      I + +   AL 
Sbjct: 177 LGAIIGAMTCFDMGGPVNKAAYA------FVIGAMGAGIGEPYASMKAAISVPDFALALS 230

Query: 201 KMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQ--ETATSMAHLH--M 256
            +    F T           E+EI+  K A +LG    G+         A  +  +   M
Sbjct: 231 TLLFPKFYT-----------EEEIEAGKAAWVLG--VAGITEGAIPFALADPLIVIPSMM 277

Query: 257 PGIIKALNVSNAAAVALY 274
            G       + A+A+A+Y
Sbjct: 278 VGG------AIASAIAMY 289


>gi|50122813|ref|YP_051980.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613339|emb|CAG76790.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 228

 Score = 39.6 bits (92), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 22/147 (14%)

Query: 146 NIGAILRSAVAFSCDGIITTKR--YSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           N+GA  R+        +       +    +  +A ++   L+++     S L +AL  + 
Sbjct: 15  NVGAAARAMKTMGFSSLRIVGSTVHQEPAARWVAHASGDILDNVQVF--STLAEALVDV- 71

Query: 204 SWGFQTIGLSSDSKKPLEQE-------IKNDKI------ALILGAEGKGLRPKTQETATS 250
              F     +    K            +  +K+      AL+ G E  GL     E A  
Sbjct: 72  --DFTVATTARSRAKYRYYCTPAELTGVLQEKVQWMASAALVFGREDVGLTNDELELADV 129

Query: 251 MAHLHMPGIIKALNVSNAAAVALYITQ 277
           +  + M     +LN+  A  V +Y  Q
Sbjct: 130 LTGVPMKADYPSLNLGQA--VMVYCYQ 154


>gi|169842128|ref|ZP_02875233.1| hypothetical protein cdivTM_33497 [candidate division TM7
           single-cell isolate TM7a]
          Length = 57

 Score = 39.6 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 138 LDHVNDPHNIGAILRSAVAFSC 159
           LD V DP N G I+R+ +A S 
Sbjct: 23  LDDVQDPGNAGTIIRTMIASSI 44


>gi|161617913|ref|YP_001586278.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161367277|gb|ABX71045.1| hypothetical protein SPAB_05780 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 203

 Score = 39.6 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 20/129 (15%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ ++ +    +  +A  +   +++I   +   L DA   +H   F     +    K   
Sbjct: 8   IVDSQAHLEPATRWVAHGSGDIIDNIEVFQT--LADA---LHDVDFTVATTARSRAKFHY 62

Query: 222 QEIKND--KI-----------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                +   +           AL+ G E  GL       A  +  + M     +LN+  A
Sbjct: 63  YASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQA 122

Query: 269 AAVALYITQ 277
             V +Y  Q
Sbjct: 123 --VMVYCYQ 129


>gi|194736168|ref|YP_002117509.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194711670|gb|ACF90891.1| RNA methyltransferase, TrmH family, group 1 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
          Length = 203

 Score = 39.6 bits (92), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 20/129 (15%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ ++ +    +  +A  +   +++I       L DA   +H   F     +    K   
Sbjct: 8   IVDSQAHLEPATRWVAHGSGDIIDNIEVFHT--LADA---LHDVDFTVATTARSRAKFHY 62

Query: 222 QEIKND--KI-----------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                +   +           AL+ G E  GL       A  +  + M     +LN+  A
Sbjct: 63  YASPAELVPLLQEKSRWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQA 122

Query: 269 AAVALYITQ 277
             V +Y  Q
Sbjct: 123 --VMVYCYQ 129


>gi|302550554|ref|ZP_07302896.1| RNA polymerase ECF-subfamily sigma factor [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468172|gb|EFL31265.1| RNA polymerase ECF-subfamily sigma factor [Streptomyces
           viridochromogenes DSM 40736]
          Length = 199

 Score = 39.6 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 17  DSHYAKLRRNHRDYKKMQSF-NQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATK 75
           +    ++R   R+ +++  F +Q+  +T  P+   + GV  V  AL     +    +  +
Sbjct: 72  NLARTRIRSAVRERRRIALFWSQREENTENPD---VAGVVDVQEALRRLPFRKRACVVLR 128

Query: 76  NALARLDWDANLPHPFPVKTVPPQ------TIDKIVGKEAVHQGL-ALETAPLLSPTLDA 128
           +A    + D  L     V TV  Q       + +++G   V Q + A   AP  SP ++ 
Sbjct: 129 HAFDLSEKDTALALGVSVGTVKSQTSKGMAELQRLLGTPGVPQRMHAALGAPRCSPAVEG 188

Query: 129 VRNSQ 133
           VR  +
Sbjct: 189 VRTGE 193


>gi|283788579|ref|YP_003368444.1| RNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282952033|emb|CBG91762.1| putative RNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 206

 Score = 39.6 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 20/129 (15%)

Query: 162 IITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLE 221
           I+ ++ +    +  +A  +   +++I              +    F     +    K   
Sbjct: 11  IVDSEAHREPATRWVAHGSGDIIDNIEVF-----PTLFDALQDVDFTIATTARSRAKFHY 65

Query: 222 QEIKND--KI-----------ALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNA 268
                +   +           AL+ G E  GL  +    A  +  + M     +LN+  A
Sbjct: 66  YATPAELVPLLEEKAGWMNHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQA 125

Query: 269 AAVALYITQ 277
             V +Y  Q
Sbjct: 126 --VMVYCYQ 132


>gi|87200257|ref|YP_497514.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135938|gb|ABD26680.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 251

 Score = 39.3 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           + + A+I G E  GL       A ++  + +     +LN++ A  +  Y    H
Sbjct: 111 SGRSAIIFGPERSGLETDDVALARAIVTVPINPEFGSLNLAQAVILCAYEWSKH 164


>gi|18976833|ref|NP_578190.1| tRNA 2'-O-methylase [Pyrococcus furiosus DSM 3638]
 gi|23822323|sp|Q8U3K5|TRM56_PYRFU RecName: Full=tRNA ribose 2'-O-methyltransferase aTrm56
 gi|18892434|gb|AAL80585.1| hypothetical protein PF0461 [Pyrococcus furiosus DSM 3638]
          Length = 193

 Score = 39.3 bits (91), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 6/106 (5%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  DGII            +                 N    +++           
Sbjct: 24  TARAFGADGIIIAGEEDEKVKESVEDVVKRWGGSFFIRFEKNWRKEIKEFRGIKVHLTMY 83

Query: 213 SSDSKKPLEQEIKNDK----IALILGAEGKGLRPKTQETATSMAHL 254
                  +E      +    I +I+GAE   +  +  E A     +
Sbjct: 84  GLHVDDIIEDIKAKFREGNDIMVIVGAEK--VPREVYELADYNVAI 127


>gi|294634936|ref|ZP_06713454.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           ATCC 23685]
 gi|291091645|gb|EFE24206.1| RNA methyltransferase, TrmH family, group 1 [Edwardsiella tarda
           ATCC 23685]
          Length = 238

 Score = 39.3 bits (91), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 16/144 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+GA  R+        +      +  E       A GA + +         +  Q +   
Sbjct: 15  NVGAAARAMKTMGFTSLRIVDSQADRE-PAARWVAHGAGDILDNACHFATLE--QALADV 71

Query: 206 GFQTIGLSSDSKKPLEQEIKND-------------KIALILGAEGKGLRPKTQETATSMA 252
            F     +    +        +               AL+ G E  GL          + 
Sbjct: 72  EFSVASTARSRARFHYYCTPPELVGILQEKQQWMASCALVFGREDSGLTNDELALVDLLT 131

Query: 253 HLHMPGIIKALNVSNAAAVALYIT 276
            + M     +LN+  A  V  Y  
Sbjct: 132 GVPMAADYPSLNLGQAVMVFCYQL 155


>gi|84502879|ref|ZP_01000992.1| probable glycine dehydrogenase decarboxylating protein [Oceanicola
           batsensis HTCC2597]
 gi|84388862|gb|EAQ01732.1| probable glycine dehydrogenase decarboxylating protein [Oceanicola
           batsensis HTCC2597]
          Length = 946

 Score = 39.3 bits (91), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 18/164 (10%)

Query: 25  RNHRDYK-KMQSFNQKSRHTSQPENL-----FLYGVHTVSA---ALNNPSRKIFQLLATK 75
           R +R Y+  +Q+  Q  R      N+      L     V A   A+ +    +  +   +
Sbjct: 307 RGNRAYRLSLQTREQHIRREKATSNVCTAQALL----AVMASMYAVFHGPSGLKAI--AQ 360

Query: 76  NALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
              AR    A           P +  D +  +    QG  L++A      L  V  +++ 
Sbjct: 361 GIHARTVTMARGLRDAGFDVFPKKVFDTVTVEVGPFQGAILKSAVEEGLNLRRVGTTRIG 420

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKS 179
           + LD V  P  I A+ R   AF   G +           ++ ++
Sbjct: 421 ITLDEVTTPDTIAAVWR---AFGITGPVPESTTYDLPEKLVRET 461


>gi|308274700|emb|CBX31299.1| Uncharacterized protein TM_1570 [uncultured Desulfobacterium sp.]
          Length = 189

 Score = 39.3 bits (91), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 23/117 (19%)

Query: 177 AKSASGAL------EHIPYIRISN-LTDALQK--MHSWGF--QTIGLSSDSKKPLEQEIK 225
             S +GA+      E +  I I N + D L++       +    +  + DS   +     
Sbjct: 70  WTSGAGAVLNPKRCEALELIYIKNSIKDVLEEIGFKEKSYPKTVVTSAKDSTDYISFFKF 129

Query: 226 ND------KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-VSN--AAAVAL 273
            +         +I G  G GL  +   TA       + G     N +S   A ++ L
Sbjct: 130 KEMLKDESPYLIIFGT-GWGLAEEIISTADYKLE-PIKGNAD-YNHLSVRSACSIVL 183


>gi|126178718|ref|YP_001046683.1| RNA methyltransferase [Methanoculleus marisnigri JR1]
 gi|125861512|gb|ABN56701.1| RNA methyltransferase, TrmH family, group 1 [Methanoculleus
           marisnigri JR1]
          Length = 232

 Score = 39.3 bits (91), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 32/155 (20%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            N+G   R    F    ++     +  + A++   AS A + +   R   +     +   
Sbjct: 15  GNVGFTARVMKNFGFTRLVLVNPCTLGDDAIMR--ASHARDVLEDARRMTIKKVYNEFD- 71

Query: 205 WGFQTIGLSSDSKK--------PLEQE--------IKNDKIALILGAEGKGLRPKTQETA 248
                +  + +  K        P              +  +A++ G E  GL       A
Sbjct: 72  ---FVVATTGEVSKSVCTPMRMPYYAPAEVREIVGDIDGTVAILFGRENWGLANTELARA 128

Query: 249 TSMAHLHMPGIIKA-----LNVSNAAAVALYITQN 278
             +  +       +     LN+S+A  +  Y   N
Sbjct: 129 NLICTIP-----TSEIYPILNLSHAVGILCYELAN 158


>gi|145534185|ref|XP_001452837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420536|emb|CAK85440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 579

 Score = 39.3 bits (91), Expect = 0.63,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 2   NLISKKKSEKIFSLKDSHY-----AKLRRNHRDYKKMQSFNQ-KSRHTSQPENLFLYGVH 55
           N + K+  E+I  LK S        +L+R+    ++++   Q + R     ++       
Sbjct: 265 NDVLKRSRERIEELKKSREYLEQLEELKRSREKIEQLEELRQSRERLQDLKKS------R 318

Query: 56  TVSAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVPPQTIDKI 104
            V  AL N   KI  L  ++  L  L       +         Q ++++
Sbjct: 319 EVQEALKNSGEKIQDLQKSRERLEELKKSRERLNQLEELRKSRQQMEEL 367


>gi|197121584|ref|YP_002133535.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
 gi|196171433|gb|ACG72406.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter sp. K]
          Length = 269

 Score = 39.3 bits (91), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 25/154 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS-------CDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +VL       N+GA  R    F                  +P   A+ A+    A     
Sbjct: 8   LVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAITARDDVLARARRM 67

Query: 189 YIRISNLTDALQ---KMHSWGF---QTIGLSSDS------------KKPLEQEIKNDKIA 230
             + S+L D  +    + S         G +S +               L +   + ++A
Sbjct: 68  ARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEGRPWLEPRGLAAELVRRSADGEVA 127

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++ G E +GL     E   ++  +       ++N
Sbjct: 128 VVFGEERRGLSDAELELCQAVCTIPTAAAYDSMN 161


>gi|326569633|gb|EGE19685.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC1]
          Length = 294

 Score = 39.3 bits (91), Expect = 0.66,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 17/129 (13%)

Query: 154 AVAFSCDGIITTKRY------SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           A A    GI+  K        +      L  +AS     +P   ++    A   +     
Sbjct: 56  ANAAGA-GILLDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQ 114

Query: 208 QT----IGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI 259
                 +  S D  ++   +      KIA++ G E +GL  +    A     +   +   
Sbjct: 115 TVSKNTLATSLDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYP 174

Query: 260 IKALNVSNA 268
           +  LNV++A
Sbjct: 175 V--LNVASA 181


>gi|108763165|ref|YP_630636.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
 gi|108467045|gb|ABF92230.1| RNA methyltransferase, TrmH family [Myxococcus xanthus DK 1622]
          Length = 240

 Score = 39.3 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 20/158 (12%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSC-DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           VL    +  N+GA  R+       D +         E A      +G       +  +  
Sbjct: 8   VLMRPRNAENLGAAARALKNCGLSDWVWVRPEVEDLEPARRLAVHAG-----DVLDAARR 62

Query: 196 TDALQKMHSWGFQTIGLSS---DSKKPLE---------QEIKNDKIALILGAEGKGLRPK 243
            D L++  +     +G SS   + K+ L                 +AL+ G E  GL   
Sbjct: 63  ADTLEEAVADCVWVVGTSSRKVEGKRRLPPRAVGEELVARAPQGPVALVFGDERSGLTNA 122

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
             E    ++ +       ++N++ A  V LY  +   A
Sbjct: 123 EVERVHDLSAVPTAPEQPSINLAQA--VLLYAYEVRVA 158


>gi|328478468|gb|EGF48190.1| RNA methyltransferase [Lactobacillus rhamnosus MTCC 5462]
          Length = 60

 Score = 39.3 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 86  NLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAV 129
                  V T P Q +D ++     HQG+ L   P    TLD +
Sbjct: 2   AQKKKILVATAPKQKLD-LMSDHGNHQGVLLAMTPYAYATLDDL 44


>gi|326560770|gb|EGE11137.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 103P14B1]
 gi|326574402|gb|EGE24344.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 101P30B1]
          Length = 294

 Score = 39.3 bits (91), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 17/129 (13%)

Query: 154 AVAFSCDGIITTKRY------SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           A A    GI+  K        +      L  +AS     +P   ++    A   +     
Sbjct: 56  ANAAGA-GILLDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQ 114

Query: 208 QT----IGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI 259
                 +  S D  ++   +      KIA++ G E +GL  +    A     +   +   
Sbjct: 115 TVSKNTLATSLDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYP 174

Query: 260 IKALNVSNA 268
           +  LNV++A
Sbjct: 175 V--LNVASA 181


>gi|294901665|ref|XP_002777464.1| hypothetical protein Pmar_PMAR024217 [Perkinsus marinus ATCC 50983]
 gi|239885101|gb|EER09280.1| hypothetical protein Pmar_PMAR024217 [Perkinsus marinus ATCC 50983]
          Length = 241

 Score = 39.3 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 128 AVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIIT--TKRYSPSES-----AVLAKSA 180
           AV     L++LD V  P N G +L +A    C  ++   ++R S         + L  S+
Sbjct: 31  AVPPPHTLIMLDGVKYPGNAGNVLSNAGKLGCSAVLLGRSRRSSQPYQQDFALSALCSSS 90

Query: 181 SGALEHIPYIRISNLTDALQKMH-SWGFQTI 210
           +     IP +   +  D +  +   + ++ I
Sbjct: 91  TVRRGGIPLVLNVHCVDTIHLLREEYAYRVI 121


>gi|149184437|ref|ZP_01862755.1| rRNA methylase [Erythrobacter sp. SD-21]
 gi|148831757|gb|EDL50190.1| rRNA methylase [Erythrobacter sp. SD-21]
          Length = 243

 Score = 39.3 bits (91), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 217 KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYIT 276
           +   E    + + A++ G E  GL  +    A ++  + +     +LN++ A  +  Y  
Sbjct: 100 EASREMAQADGRSAILFGPERSGLETEDVALARAILTVPINPEFGSLNLAQAVILCAYEW 159

Query: 277 QNH 279
             H
Sbjct: 160 SKH 162


>gi|326387396|ref|ZP_08209005.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208052|gb|EGD58860.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 233

 Score = 39.3 bits (91), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
             + A++ G E  GL       A ++  + +     +LN++ A  +  Y    H
Sbjct: 100 PGQCAIVFGPERSGLETDDVALARTIITVPINPEFASLNLAQAVILCAYEWSKH 153


>gi|229513115|ref|ZP_04402581.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
 gi|229350008|gb|EEO14962.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TMA 21]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  LE  +   +              +A++ G E  GL 
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRT-LEWPMLEPRECGEKLISEANQHSVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A  +  Y  +
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|153824534|ref|ZP_01977201.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
 gi|149741752|gb|EDM55781.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  LE  +   +              +A++ G E  GL 
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRT-LEWPMLEPRECGEKLISEANQHSVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A  +  Y  +
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|254225011|ref|ZP_04918625.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
 gi|125622398|gb|EAZ50718.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.75,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  LE  +   +              +A++ G E  GL 
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRT-LEWPMLEPRECGEKLISEANQHSVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A  +  Y  +
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|319943416|ref|ZP_08017698.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
           mirabilis ATCC 51599]
 gi|319743231|gb|EFV95636.1| tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ [Lautropia
           mirabilis ATCC 51599]
          Length = 324

 Score = 38.9 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 18/52 (34%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
            ++A + G E  GL             +       +LN++ A  +  +  + 
Sbjct: 145 QRVAFVFGTERTGLGTAEMARCQRWLTIPADADYSSLNLAQAVQIVAFSLRR 196


>gi|262402869|ref|ZP_06079430.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
 gi|297581145|ref|ZP_06943069.1| RNA methyltransferase [Vibrio cholerae RC385]
 gi|262351651|gb|EEZ00784.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC586]
 gi|297534461|gb|EFH73298.1| RNA methyltransferase [Vibrio cholerae RC385]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  LE  +   +              +A++ G E  GL 
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRT-LEWPMLEPRECGEKLISEANQHSVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A  +  Y  +
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|262165058|ref|ZP_06032795.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
 gi|262024774|gb|EEY43442.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus VM223]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        ++  +A +A  +   +       L
Sbjct: 8   VVLVGTSHSGNIGSAARAMKVMGLSQMVLVDPQCQVDAQAIALAAGASEIALNAQIFPTL 67

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
             A+          +G S+ S+  L+  +   +              +A++ G E  GL 
Sbjct: 68  EAAVADCR----LVVGTSARSRT-LDWPMLEPRQCGEKLIAEASQHTVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +       +       +LN++ A  +  Y  +
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|86750840|ref|YP_487336.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
 gi|86573868|gb|ABD08425.1| tRNA/rRNA methyltransferase (SpoU) [Rhodopseudomonas palustris
           HaA2]
          Length = 398

 Score = 38.9 bits (90), Expect = 0.78,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 15/158 (9%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP------ 188
           +++L       NIG   R+   F    +   K      +    +SASGA   +       
Sbjct: 19  VVILVEPQLGENIGMCARAMGNFGLKRLRLVKPRDGWPNVHARRSASGADHILDAVELFE 78

Query: 189 -----YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
                    + L     + H       G  + +++ +   +      ++ G E  GL   
Sbjct: 79  TVGEAVADCTLLFATTARAHDQAKPVRGPEAAAQEMITAAVGGGTAGILFGRERYGLENH 138

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
               A  +    +     +LN++ A  V L  Y    H
Sbjct: 139 EVALANRIVTFPVNPAFASLNLAQA--VLLMGYEWFKH 174


>gi|225849292|ref|YP_002729456.1| tRNA (guanine-N(1)-)-methyltransferase (M1G-methyltransferase)
           (tRNA [GM37] methyltransferase) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643150|gb|ACN98200.1| tRNA (guanine-N(1)-)-methyltransferase (M1G-methyltransferase)
           (tRNA [GM37] methyltransferase) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 190

 Score = 38.9 bits (90), Expect = 0.80,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 21/124 (16%)

Query: 163 ITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ---TIGLSSDS--- 216
             T+ +  S +    +S +G+L  +    +S++T+ L+K+     +    I  S+     
Sbjct: 66  YWTEGFGASFNPK--RSMAGSLVKV----VSSITEMLEKIKEEKGKYPKLIATSAKKYPQ 119

Query: 217 KKPLEQ--EIKNDK---IALILGAEGKGLRPKTQETATSMAHLHM--PGIIKALNVSNAA 269
                Q  EI N K     ++LG  G G+ P+  E+   +    +  PG    L+V NAA
Sbjct: 120 TVSYSQMREILNKKDDVYLILLGT-GWGMPPELVESCDYILE-PILGPGDYNHLSVRNAA 177

Query: 270 AVAL 273
           A+ L
Sbjct: 178 AIIL 181


>gi|170723055|ref|YP_001750743.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida W619]
 gi|169761058|gb|ACA74374.1| tRNA/rRNA methyltransferase (SpoU) [Pseudomonas putida W619]
          Length = 133

 Score = 38.9 bits (90), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 12/133 (9%)

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A  +  + +  T +     +             IP I I +L   +      G   +
Sbjct: 1   MRAAGCYGVNSVFYTGKRY-ERARDFVTDTKRVHYDIPLIGIDDLQRIIP----LGCTPV 55

Query: 211 GLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            +   +  +PL +    D+   I G E   L    +       ++   G +   N++   
Sbjct: 56  AVELVEGARPLPEYTHPDRAIYIFGPEDGSLDANVRAWCEETIYIPTEGCM---NLAATV 112

Query: 270 AVALYITQNHFAK 282
            V LY   +  AK
Sbjct: 113 NVVLY---DRLAK 122


>gi|229525392|ref|ZP_04414797.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229338973|gb|EEO03990.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae bv. albensis
           VL426]
          Length = 244

 Score = 38.9 bits (90), Expect = 0.88,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  LE  +   +              +A++ G E  GL 
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRT-LEWPMLEPRECGEKLISEANQHSVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
            +  +       +       +LN++ A  +  Y  +
Sbjct: 123 NEELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|261212154|ref|ZP_05926440.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
 gi|260838762|gb|EEX65413.1| tRNA:Cm32/Um32 methyltransferase [Vibrio sp. RC341]
          Length = 243

 Score = 38.9 bits (90), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 19/159 (11%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 7   VVLVGTSHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 62

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  L+  +   +              +A++ G E  GL 
Sbjct: 63  VPTLEAAVADCGLVVGTSARSRT-LDWPMLEPRQCGEKLIAEASQHTVAMVFGRERTGLT 121

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHF 280
               +       +       +LN++ A  +  Y  +  F
Sbjct: 122 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVRMAF 160


>gi|220916347|ref|YP_002491651.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954201|gb|ACL64585.1| tRNA/rRNA methyltransferase (SpoU) [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 269

 Score = 38.9 bits (90), Expect = 0.90,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 25/154 (16%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFS-------CDGIITTKRYSPSESAVLAKSASGALEHIP 188
           +VL       N+GA  R    F                  +P   AV A+    A     
Sbjct: 8   LVLHRPQSADNVGAAARVMKNFGLSRLVVVAPAAWGGPPRTPGTGAVTARDDVLARARRM 67

Query: 189 YIRISNLTDALQ---KMHSWGF---QTIGLSSDS------------KKPLEQEIKNDKIA 230
             + S+L D  +    + S         G +S +               L +  +  ++A
Sbjct: 68  ARKASDLLDGAEIHPDLRSAIGPATWVCGTTSRAVEGRPWLEPRGLAAELVRRSEQGEVA 127

Query: 231 LILGAEGKGLRPKTQETATSMAHLHMPGIIKALN 264
           ++ G E +GL     E   ++  +       ++N
Sbjct: 128 VVFGEERRGLSDAELELCQAVCTIPTAAAYDSMN 161


>gi|116878435|ref|YP_842169.1| rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM 2380]
 gi|114843071|gb|ABI81848.1| predicted rRNA methylase (SpoU class) [Pelobacter carbinolicus DSM
           2380]
          Length = 166

 Score = 38.9 bits (90), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 18/127 (14%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            ++ ++L     P NIG + R+   F    +      +        K A  A   +   R
Sbjct: 7   KRIRVILVEPQSPGNIGMVARAMGNFGVSELRLVNPCT-YLHPEARKFAVRAAPLLGKAR 65

Query: 192 I-SNLTDALQKMHSWGFQTIGL--SSDSKKPLEQEIKNDKIA----------LILGAEGK 238
           +  +L  AL  +            +   +  L       ++A          L+ G E  
Sbjct: 66  VFPDLASALADL---PMSVAATRRAGKLRGELLDVADAARLAAGLPAVEGVGLVFGREDA 122

Query: 239 GL-RPKT 244
           GL   + 
Sbjct: 123 GLTSDEV 129


>gi|56696923|ref|YP_167285.1| RNA methyltransferase [Ruegeria pomeroyi DSS-3]
 gi|56678660|gb|AAV95326.1| RNA methyltransferase, TrmH family, group 1 [Ruegeria pomeroyi
           DSS-3]
          Length = 248

 Score = 38.9 bits (90), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL       NIGA  R+   F  D +          ++     +SGA   +   +   +
Sbjct: 10  IVLVRPQMGENIGAAARAMWNFGLDRMRIVAPRDGWPNSRAVAMSSGAGRLLDEAQLYDD 69

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRPK 243
           L  AL    ++ F T     +  KP+            +    +K+A++ G E  GL   
Sbjct: 70  LPGALGDC-TYVFATTARPREMTKPVYSPERAMQLAAEKLAAGEKVAVLFGPERAGLEND 128

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
               A ++  + +     +LN+     V L  Y     
Sbjct: 129 DIARANAIITVPVNPDYASLNLGQC--VLLVAYEWMRQ 164


>gi|18266785|sp|O58214|TRM56_PYRHO RecName: Full=tRNA ribose 2'-O-methyltransferase aTrm56
          Length = 203

 Score = 38.9 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209
           +A AF  DGII            +                 N    +++    G +    
Sbjct: 24  TARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFNRNWRKVMKEF--TGVKVHLT 81

Query: 210 -IGLSSDS--KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             GL  D   ++  E+  K +   +I+GAE   +  +  E A     +      +     
Sbjct: 82  MYGLHVDDVIEELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----- 134

Query: 267 NAA-AVAL 273
            AA AV L
Sbjct: 135 VAALAVLL 142


>gi|14590372|ref|NP_142438.1| tRNA 2'-O-methylase [Pyrococcus horikoshii OT3]
 gi|3256864|dbj|BAA29547.1| 206aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 206

 Score = 38.5 bits (89), Expect = 0.98,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209
           +A AF  DGII            +                 N    +++    G +    
Sbjct: 27  TARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFNRNWRKVMKEF--TGVKVHLT 84

Query: 210 -IGLSSDS--KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             GL  D   ++  E+  K +   +I+GAE   +  +  E A     +      +     
Sbjct: 85  MYGLHVDDVIEELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----- 137

Query: 267 NAA-AVAL 273
            AA AV L
Sbjct: 138 VAALAVLL 145


>gi|228942886|ref|ZP_04105401.1| serine protease [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228976335|ref|ZP_04136805.1| serine protease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228783383|gb|EEM31492.1| serine protease [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228816784|gb|EEM62894.1| serine protease [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 455

 Score = 38.5 bits (89), Expect = 1.00,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 149 AILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQ 208
           AIL++A A     II  + ++P       +       +I      +  +A++   + G  
Sbjct: 232 AILQAANALGAGDIILIELHAPGP-RFNFQDRPDQKGYIAMEWWKDDFEAIRFATAKGII 290

Query: 209 TIGLSSDSKKPLEQEIKNDKI--------ALILGA 235
            +G + +  + L+  I  ++         A+++GA
Sbjct: 291 VVGAAGNGAEDLDDPIYENRFNRSQRDSGAILVGA 325


>gi|332089404|gb|EGI94508.1| spoU rRNA Methylase family protein [Shigella boydii 3594-74]
          Length = 130

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 8/115 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              L+       +   T G  + S    +         L+ G E +GL     + 
Sbjct: 64  RAFLEAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDA 113


>gi|326559242|gb|EGE09673.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 46P47B1]
          Length = 294

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 17/129 (13%)

Query: 154 AVAFSCDGIITTKRY------SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           A A    GI+  K        +      L  +AS     +P   ++    A   +     
Sbjct: 56  ANAAGA-GILLDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQ 114

Query: 208 QT----IGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLH--MPGI 259
                 +  S D       ++ N   KIA++ G E +GL  +    A     +   +   
Sbjct: 115 TVSKNTLATSLDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYP 174

Query: 260 IKALNVSNA 268
           +  LNV++A
Sbjct: 175 V--LNVASA 181


>gi|91772321|ref|YP_565013.1| tRNA 2'-O-methylase [Methanococcoides burtonii DSM 6242]
 gi|121684509|sp|Q12Z63|TRM56_METBU RecName: Full=tRNA ribose 2'-O-methyltransferase aTrm56
 gi|91711336|gb|ABE51263.1| protein of unknown function DUF127 [Methanococcoides burtonii DSM
           6242]
          Length = 178

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 6/105 (5%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A A   +G++            +   A             N    ++K    G +   L
Sbjct: 26  TARALGAEGMLLAS-NDKGIKNAIEDVAERWGGDFYVENDVNWKSEIEKWKEEGGKVCHL 84

Query: 213 SSDSKKPLE---QEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
           S       +   +    DK+ +++GAE   +  +  + A     +
Sbjct: 85  SMYGINLPDAAGEIKLCDKLMIVVGAEK--VPTEIYDLADWNVAI 127


>gi|4866|emb|CAA78498.1| k-PET56 protein [Lachancea kluyveri]
          Length = 139

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 10/62 (16%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ---------PENLFLYGVHTVSAAL 61
            ++  K++HY++L+++    K+ Q    KS+++ +         P   ++YG ++V AAL
Sbjct: 79  DLYGKKEAHYSRLKQDILSSKRQQE-EHKSKYSRKSVTLGLRPNPLMEYIYGTNSVIAAL 137

Query: 62  NN 63
           N+
Sbjct: 138 NS 139


>gi|326559881|gb|EGE10281.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 7169]
          Length = 294

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 17/129 (13%)

Query: 154 AVAFSCDGIITTKRY------SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGF 207
           A A    GI+  K        +      L  +AS     +P   ++    A   +     
Sbjct: 56  ANAAGA-GILLDKACITKDIKNAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQ 114

Query: 208 QT----IGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLH--MPGI 259
                 +  S D       ++ N   KIA++ G E +GL  +    A     +   +   
Sbjct: 115 TVSKNTLATSLDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYP 174

Query: 260 IKALNVSNA 268
           +  LNV++A
Sbjct: 175 V--LNVASA 181


>gi|104783013|ref|YP_609511.1| hypothetical protein PSEEN4029 [Pseudomonas entomophila L48]
 gi|95112000|emb|CAK16727.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 133

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 9/127 (7%)

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTI 210
           +R+A  +  + +  T +     +             IP I I +L   +      G   +
Sbjct: 1   MRAAGCYGVNSVFYTGKRY-ERARDFVTDTKRVHYDIPLIGIDDLQRIIP----LGCTPV 55

Query: 211 GLSS-DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
            +   +  +PL +    D+   I G E   L    +       ++   G +   N++   
Sbjct: 56  AVELVEGARPLPEYTHPDRAIYIFGPEDGSLDADVRAWCEETIYIPTEGCM---NLAATV 112

Query: 270 AVALYIT 276
            V LY  
Sbjct: 113 NVVLYDR 119


>gi|301100565|ref|XP_002899372.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262104016|gb|EEY62068.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 135

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               A    ++ + G  ++LN+S A A+ L
Sbjct: 1   MLRAAHRRVYMPLFGFSESLNLSVATALVL 30


>gi|254511946|ref|ZP_05124013.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
 gi|221535657|gb|EEE38645.1| tRNA/rRNA methyltransferase [Rhodobacteraceae bacterium KLH11]
          Length = 247

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISNLTDALQK--- 201
           NIGA  R+   F  D +          +      +SGA   +   +   +L  AL     
Sbjct: 20  NIGAAARAMWNFGLDRMRIVAPRDGWPNPKAVAMSSGAGRLLDEAQLFDDLGRALADSTY 79

Query: 202 -----MHSWGFQTIGLSSDSKKPL--EQEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
                    G      S +    +  E+    +K++++ G E  GL  +    A ++  +
Sbjct: 80  VFATTARQRGLTKPVYSPEKAMQIAAEKVAAGEKVSVLFGPERAGLENEDIAKANAIISV 139

Query: 255 HMPGIIKALNVSNAAAVAL--YITQNH 279
            +     +LN+     V L  Y     
Sbjct: 140 PVNPEYASLNLGQC--VLLTAYEWMRQ 164


>gi|134100014|ref|YP_001105675.1| hypothetical protein SACE_3476 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291002994|ref|ZP_06560967.1| hypothetical protein SeryN2_00540 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912637|emb|CAM02750.1| hypothetical protein SACE_3476 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 118

 Score = 38.5 bits (89), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 147 IGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGA 183
           +G+++RSA A   +G++ T            ++ +G+
Sbjct: 50  LGSVIRSADALGANGVVVTGHAVDLHDPRTLRATTGS 86


>gi|328467013|gb|EGF38111.1| TrmH family group 2 RNA methyltransferase [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 122

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 144 PHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           P N G I R+  A +    +       ++   L ++       +  I   +L D +  + 
Sbjct: 13  PANTGNIARTCAATNSYLHLIKPLGFETDDKHLRRAGLDYWAKVRIIYHDSLDDFMATVK 72

Query: 204 SWGFQTIGLSSDSKKPLEQEIKNDKIA---LILGAEGKGLRPK-TQETATS 250
                   ++  + +        D  A    + G E  GL     +E    
Sbjct: 73  DPQ-HLYLITKFADQTYSDRDYTDTHADHYFLFGKETTGLPEGFMREHEDQ 122


>gi|296537398|ref|ZP_06899247.1| S-(hydroxymethyl)glutathione dehydrogenase [Roseomonas cervicalis
           ATCC 49957]
 gi|296262277|gb|EFH09053.1| S-(hydroxymethyl)glutathione dehydrogenase [Roseomonas cervicalis
           ATCC 49957]
          Length = 389

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 18/115 (15%)

Query: 151 LRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWG---- 206
           +RSA+      +I       +    LA + +G  E I +     +   +QK    G    
Sbjct: 202 IRSALMLGAKQVIAI----DTVPERLAMARAGGAETIDFAEGGVIDQLMQKTAGRGPDKC 257

Query: 207 FQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATS------MAHLH 255
              +G+ S +    +  +   K A++LG +    RP     A        +  + 
Sbjct: 258 IDAVGMESHATASFDAMLDKAKAAMMLGTD----RPHVLREAIMACRPGGIVSIP 308


>gi|218671146|ref|ZP_03520817.1| rRNA methylase protein [Rhizobium etli GR56]
          Length = 153

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 18/144 (12%)

Query: 16  KDSHYAKLRR----------NHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPS 65
           KD H    RR           +   K +++   K +   +       G+  V  A+    
Sbjct: 3   KDFHDQGPRRVGQVKEVTSLANPIIKDIKALTNK-KSREESGTFLAEGLKLVIDAIELGW 61

Query: 66  RKIFQLLATKNALARLDWDANLPHPFP----VKTVPPQTIDKIVGKEAVHQGLALETAPL 121
             I  L+  K A  +   +            V  V  + I  I  ++   Q +       
Sbjct: 62  -TIRTLVYAKAAKGKPLVEQMAAKTVASGGLVLEVSEKVIGSITRRD-NPQMVVGIFDQR 119

Query: 122 LSPTLDAVRNSQL-LMVLDHVNDP 144
             P  D        L+ LD V DP
Sbjct: 120 WKPLKDIPAQGGRDLVALDRVRDP 143


>gi|163731767|ref|ZP_02139214.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
           Och 149]
 gi|161395221|gb|EDQ19543.1| RNA methyltransferase, TrmH family protein [Roseobacter litoralis
           Och 149]
          Length = 251

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS-NLTDALQKMHS 204
           NIGA  R+   F  D +          +      ASGA   +    +S +L  +++   S
Sbjct: 23  NIGASARAMWNFGLDRMRVVAPRDGWPNQAAVALASGAGRLLDNASLSPDLPASIEDC-S 81

Query: 205 WGFQTIGLSSDSKKPL-----------EQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           + F T     D  KP+           E+    +++A++ G E  GL  +    A ++  
Sbjct: 82  FVFATTARPRDLTKPVFSPEEAMRAAAERISAGERVAVLFGPERAGLENEDIARANAIIS 141

Query: 254 LHMPGIIKALNVSNAAAVAL--YITQN 278
           + +     +LN++    V L  Y    
Sbjct: 142 VPVNPDFPSLNLAQC--VLLVGYEWMR 166


>gi|163733130|ref|ZP_02140574.1| oxidoreductase, Gfo/Idh/MocA family protein [Roseobacter litoralis
           Och 149]
 gi|161393665|gb|EDQ17990.1| oxidoreductase, Gfo/Idh/MocA family protein [Roseobacter litoralis
           Och 149]
          Length = 395

 Score = 38.5 bits (89), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 81  LDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDH 140
           L+ +A       V +        IV    +H  +A      L   +  + +  + + L+ 
Sbjct: 78  LEKEAARKDGIDVVS--------IVTPNHLHYDIA---KAFLQKGIHVICDKPMTVTLEE 126

Query: 141 VNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAK-SASGALEHIPYIRISNLTDAL 199
             D      ++R+A A     ++T             K  A G L  +  IR S + D L
Sbjct: 127 SLD------LVRTADASGAVFVLTQNNTGYPLVRQARKMVADGTLGDLQVIRTSYVQDWL 180

Query: 200 QKMHSWGFQTIGLSSDSKK 218
                    T  L ++ +K
Sbjct: 181 ---------TTALDAEGQK 190


>gi|67459187|ref|YP_246811.1| rRNA methylase [Rickettsia felis URRWXCal2]
 gi|67004720|gb|AAY61646.1| rRNA methylase [Rickettsia felis URRWXCal2]
          Length = 46

 Score = 38.5 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 256 MPGIIKALNVSNAAAVALYITQNHF 280
           M GII++LN+  ++ + LY      
Sbjct: 1   MYGIIESLNLGTSSGIVLYEIAKQR 25


>gi|326576005|gb|EGE25928.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis CO72]
 gi|326576417|gb|EGE26326.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis O35E]
          Length = 294

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 17/129 (13%)

Query: 154 AVAFSCDGIITTKR-------YSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHS 204
           A A    GI+  K        ++  +  ++  +++ + +    +   ++    AL+++  
Sbjct: 56  ANAAGA-GILLDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQ 114

Query: 205 WGFQ-TIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGI 259
              + T+  S D  ++   +      KIA++ G E +GL  +    A     +   +   
Sbjct: 115 TVSKNTLATSLDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYP 174

Query: 260 IKALNVSNA 268
           +  LNV++A
Sbjct: 175 V--LNVASA 181


>gi|90423088|ref|YP_531458.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB18]
 gi|90105102|gb|ABD87139.1| RNA methyltransferase TrmH, group 1 [Rhodopseudomonas palustris
           BisB18]
          Length = 410

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           +++L       NIG   R+   F    +   K      +    ++ASGA   +  + +  
Sbjct: 19  VVILVEPQLGENIGMCARAMGNFGLTRLRIVKPRDGWPNVHARRAASGADYILDAVELFE 78

Query: 195 LTD-----------ALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +              + H            +++   +  +  ++ ++ G E  GL   
Sbjct: 79  TVEQAVAGCSLLFATTARAHDQAKPVRAPEEAAREIFAEVGQGGEVGIMFGRERYGLEND 138

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               A  +    +     +LN++ A  V L
Sbjct: 139 EVALANRIVTFPVNPGFASLNLAQA--VLL 166


>gi|159044062|ref|YP_001532856.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
           12]
 gi|157911822|gb|ABV93255.1| putative tRNA/rRNA methyltransferase [Dinoroseobacter shibae DFL
           12]
          Length = 255

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 19/167 (11%)

Query: 127 DAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH 186
           D       ++V        NIG   R+   F  D +          S      ASGA   
Sbjct: 7   DTPSQPAFVLV--RPQMGENIGGSARAMWNFGLDRMRVVAPRDGWPSEKAVAMASGAGRL 64

Query: 187 IPYI-RISNLTDALQKMHSWGFQTIGLSSDSKKPL-----------EQEIKNDKIALILG 234
           +       +  +AL     + F T     D  KP+               +  ++A++ G
Sbjct: 65  LDEAGLYGSTAEALAD-ADYVFATTARPRDLTKPVVTPERAMEQARALIAEGQRVAVLFG 123

Query: 235 AEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
            E  GL  +    A ++  + +     +LN++    V L  Y     
Sbjct: 124 PERAGLENEDIALANAIVSVPVNPAFPSLNLAQC--VLLTAYEWGRQ 168


>gi|163759594|ref|ZP_02166679.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
 gi|162283191|gb|EDQ33477.1| hypothetical protein HPDFL43_09582 [Hoeflea phototrophica DFL-43]
          Length = 276

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 13/139 (9%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIG + R+   F    +          +     +AS A   I   ++    +A     ++
Sbjct: 27  NIGMVARAMANFGLSNLRIVNPRDGWPNEKAISAASRADHVIESAKVFETLEAATADLNF 86

Query: 206 GFQTIGLSSDSKKPLE-----------QEIKNDKIALILGAEGKGLRPKTQETATSMAHL 254
            F T     D  KP+            +E   +K  ++ G E  GLR      A  +   
Sbjct: 87  VFATTARPRDGHKPVRGPVEAGTVLRTRENAGEKTGILFGRERIGLRNWEVGLADEIVTF 146

Query: 255 HMPGIIKALNVSNAAAVAL 273
            +     +LN++ A  V L
Sbjct: 147 PVNPAYASLNIAQA--VLL 163


>gi|302392414|ref|YP_003828234.1| hypothetical protein Acear_1664 [Acetohalobium arabaticum DSM 5501]
 gi|302204491|gb|ADL13169.1| Protein of unknown function DUF2168 [Acetohalobium arabaticum DSM
           5501]
          Length = 192

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 14/76 (18%)

Query: 209 TIGLSSD------SKKPLEQEIKND--KIALILGAEGKGLRPKTQETATSMAHLHMPGII 260
            I   +         K L  +I  D     ++LG  G GL  +  E A  +    + G  
Sbjct: 110 VIATDARKYENTIGYKDLRDDIATDQRPYLILLGT-GWGLTQEVIEEADYILE-PIYGRG 167

Query: 261 KALN-VSN--AAAVAL 273
              N +S   AA++ L
Sbjct: 168 D-YNHLSVRSAASIIL 182


>gi|326566609|gb|EGE16752.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis 12P80B1]
          Length = 235

 Score = 38.1 bits (88), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 209 TIGLSSD--SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH--MPGIIKALN 264
           T+  S D  ++   +      KIA++ G E +GL  +    A     +   +   +  LN
Sbjct: 61  TLATSLDHMNQSADDSVNALPKIAILFGREDRGLTNEELSLADYHIQIPANLNYPV--LN 118

Query: 265 VSNA 268
           V++A
Sbjct: 119 VASA 122


>gi|218887968|ref|YP_002437289.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758922|gb|ACL09821.1| tRNA (guanine-N1)-methyltransferase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 431

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 11/73 (15%)

Query: 209 TIGLSSDSKKP-----LEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH---MPGII 260
            +  S+          +   +    + L+ G  G GL P                M G  
Sbjct: 354 VMATSARGAGDTTVGQVRSILAERPVLLLFGT-GHGLSPHLVAACDGTLR-PVRWMDGYN 411

Query: 261 KALNVSNAAAVAL 273
             L+V  AAA+ +
Sbjct: 412 H-LSVRTAAAIIM 423


>gi|188576414|ref|YP_001913343.1| glucan 1,4-beta-glucosidase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520866|gb|ACD58811.1| glucan 1,4-beta-glucosidase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 844

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 542 IKKLKAEGIPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGTV 599


>gi|289808937|ref|ZP_06539566.1| tRNA guanosine-2'-O-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 36

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 214 SDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETA 248
           SD      +        +++G E  G+  +  + A
Sbjct: 2   SDKAVDFREIDYTRPTCILMGQEKTGITQEALDLA 36


>gi|308799711|ref|XP_003074636.1| unnamed protein product [Ostreococcus tauri]
 gi|116000807|emb|CAL50487.1| unnamed protein product [Ostreococcus tauri]
          Length = 384

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 212 LSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPG------------- 258
            + ++ K + +E K  K+A++ G E  GL  +    A++   +   G             
Sbjct: 188 TAREAAKKVAEEAKRGKVAVLFGNERTGLTNEELAWASAAVVVPTAGAGKLCRKSLKYTG 247

Query: 259 --IIKALNVSNAAAVALY 274
                +LN+S+A  +  +
Sbjct: 248 ATGPTSLNLSHAVGIIAH 265


>gi|85708541|ref|ZP_01039607.1| rRNA methylase [Erythrobacter sp. NAP1]
 gi|85690075|gb|EAQ30078.1| rRNA methylase [Erythrobacter sp. NAP1]
          Length = 249

 Score = 38.1 bits (88), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQN 278
             + A++ G E  GL  +    A  +  + +     +LN++ A  +  Y    
Sbjct: 105 PGRHAILFGREASGLETEDVALARHILTVPINPEFGSLNLAQAVILCAYEWSR 157


>gi|145297940|ref|YP_001140781.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850712|gb|ABO89033.1| RNA methyltransferase, TrmH family [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 169

 Score = 38.1 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 16/162 (9%)

Query: 123 SPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASG 182
           SPT DA  +    + L +   P N+GA++R+A  +  D +  T       +   A     
Sbjct: 16  SPTEDA--SPYCCIGLVNPKSPENVGAVMRAAGCYGADEVYYTGNR-FELARRFATDTKQ 72

Query: 183 ALEHIPYIRISNLTDALQKMHSWGFQTIGLSS-DSKKPLEQEIKNDKIALILGAEGKG-L 240
            ++ IP + +  L D +      G   + +   +    L   +  ++   I G E  G L
Sbjct: 73  MVDKIPLLGVEALLDFVPT----GCTPVLVDLIEGATSLPDYVHPERAFYIFGPE-DGTL 127

Query: 241 RPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNHFAK 282
            P        + ++   G +   N++ +  V LY   +  AK
Sbjct: 128 DPARFAAVKEVIYVPTLGCM---NLAASVNVILY---DRLAK 163


>gi|119719619|ref|YP_920114.1| hypothetical protein Tpen_0709 [Thermofilum pendens Hrk 5]
 gi|224493396|sp|A1RY31|TRM56_THEPD RecName: Full=tRNA ribose 2'-O-methyltransferase aTrm56
 gi|119524739|gb|ABL78111.1| protein of unknown function DUF127 [Thermofilum pendens Hrk 5]
          Length = 181

 Score = 38.1 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 7/106 (6%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
           A AF  DGI   +    S    L             +   +  + +      G   + L+
Sbjct: 30  ARAFGADGIFLEESVEESVIRTLRNVVENWGGDFKVLTTRDPRETVANWKKNGGIVVHLT 89

Query: 214 SDSKKPLEQEI-----KNDKIALILGAEGKGLRPKTQETATSMAHL 254
              +   E+ I     +   I +++G E   +     E A     +
Sbjct: 90  MYGENISEELINLISGQGKDILVVVGGEK--VPRWLFEEADFNVAI 133


>gi|122879175|ref|YP_200995.6| glucan 1,4-beta-glucosidase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 870

 Score = 38.1 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 568 IKKLKAEGIPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGTV 625


>gi|115378469|ref|ZP_01465628.1| DNA-directed RNA polymerase, beta subunit [Stigmatella aurantiaca
            DW4/3-1]
 gi|310822260|ref|YP_003954618.1| bifunctional DNA-directed RNA polymerase subunit beta-beta'
            [Stigmatella aurantiaca DW4/3-1]
 gi|115364531|gb|EAU63607.1| DNA-directed RNA polymerase, beta subunit [Stigmatella aurantiaca
            DW4/3-1]
 gi|309395332|gb|ADO72791.1| Bifunctional DNA-directed RNA polymerase subunit beta-beta'
            [Stigmatella aurantiaca DW4/3-1]
          Length = 1408

 Score = 38.1 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 34/188 (18%)

Query: 6    KKKSEKIFSLKDSHYAKLRRNHRDYK-KMQSFNQKSRHTSQPENLF-------------- 50
            K ++++I  L+DS +++LR   R  + + +  + K +   +  ++               
Sbjct: 981  KDQNDEIKVLQDSAFSRLRNLLRGKEAQGKLVDDKGKILLKKGDILNDELLATVPYKYWA 1040

Query: 51   -------LYGVHTVSAALNNPSRKIFQL-LATKNALARLDWDANLPHPF----PVKTVPP 98
                   L G   +   L +       + LA    +AR+     LP        V     
Sbjct: 1041 EISVGDPLDGR--IRDILKSLEDTKEAVKLAFGEKIARIKKGDELPPGVIKMVKVYVAIK 1098

Query: 99   QTI---DKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSA 154
            + +   DK+ G+    +G+     P    P LD  R   +++    V    NIG IL + 
Sbjct: 1099 RKLAVGDKMAGRHGN-KGVVSRIHPEEDMPYLDDGRPVDIVLNPLGVPSRMNIGQILETH 1157

Query: 155  VAFSCDGI 162
            + ++  G+
Sbjct: 1158 LGWAAKGV 1165


>gi|84623895|ref|YP_451267.1| glucan 1,4-beta-glucosidase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58426573|gb|AAW75610.1| glucan 1,4-beta-glucosidase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367835|dbj|BAE68993.1| glucan 1,4-beta-glucosidase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 888

 Score = 38.1 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 586 IKKLKAEGIPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGTV 643


>gi|170292441|pdb|2YY8|A Chain A, Crystal Structure Of Archaeal Trna-Methylase For Position
           56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
           S- Adenosyl-L-Methionine
 gi|170292442|pdb|2YY8|B Chain B, Crystal Structure Of Archaeal Trna-Methylase For Position
           56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
           S- Adenosyl-L-Methionine
          Length = 201

 Score = 38.1 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT--- 209
           +A AF  DGII            +                 N    +++    G +    
Sbjct: 24  TARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFNRNWRKVMKEF--TGVKVHLT 81

Query: 210 -IGLSSDS--KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVS 266
             GL  D   ++  E+  K +   +I+GAE   +  +  E A     +      +     
Sbjct: 82  MYGLHVDDVIEELKEKLKKGEDFMIIVGAEK--VPREVYELADYNVAIGNQPHSE----- 134

Query: 267 NAA-AVAL 273
            AA AV L
Sbjct: 135 VAALAVLL 142


>gi|166711870|ref|ZP_02243077.1| glucan 1,4-beta-glucosidase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 888

 Score = 38.1 bits (88), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 586 IKKLKAEGIPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGTV 643


>gi|305662548|ref|YP_003858836.1| hypothetical protein Igag_0104 [Ignisphaera aggregans DSM 17230]
 gi|304377117|gb|ADM26956.1| conserved hypothetical protein [Ignisphaera aggregans DSM 17230]
          Length = 179

 Score = 38.1 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 15/127 (11%)

Query: 154 AVAFSCDGIITTKRYSPSESAVLAKS--ASGALEHIPYIRISNLTDALQKMHSWGFQTIG 211
           A AF   G+  +    P  S  L+K     G  ++   I      + + K+ S GF  + 
Sbjct: 28  ARAFGAKGVYISDIIDPVLSQTLSKVVKRWGG-KYFELIMGVKPLEIIYKLKSEGFCIVH 86

Query: 212 LSSDS---KKPLEQEIKN-DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           L+         ++       KI +++GAE   +     E +     +      +      
Sbjct: 87  LTMYGLHIDSIIDNIRHQCKKILVVIGAEK--VERIYYEISDYNIAIGNQPHSE-----V 139

Query: 268 AA-AVAL 273
           AA A+ L
Sbjct: 140 AALAIFL 146


>gi|153800584|ref|ZP_01955170.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229523431|ref|ZP_04412838.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
 gi|124123873|gb|EAY42616.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
 gi|229339794|gb|EEO04809.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae TM 11079-80]
          Length = 244

 Score = 38.1 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  LE  +   +              +A++ G E  GL 
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRT-LEWPMLEPRECGEKLISEANQHSVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +       +       +LN++ A  +  Y  +
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|547828|sp|P37006|LAST_SERMA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase LasT
          Length = 196

 Score = 38.1 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 19/99 (19%)

Query: 179 SASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK 238
            A+ A     +       + L+++                         + AL+ G E  
Sbjct: 42  VATTARSRARFHYYCTPPELLEQLSERKQWV-----------------GQAALVFGREDS 84

Query: 239 GLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           GL  +    A  +  + M     +LN+  A  V +Y  Q
Sbjct: 85  GLTNEELALADLLTGVPMQADYPSLNLGQA--VMVYCYQ 121


>gi|33152694|ref|NP_874047.1| tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
 gi|33148918|gb|AAP96436.1| probable tRNA/rRNA methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 242

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 228 KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
           KIALI G E  GL  +         ++      ++LN++ A  +A Y  +
Sbjct: 110 KIALIFGRERIGLTNEELLKCHYHLNVPTNPEYESLNLAMAVQLACYEIR 159


>gi|227080925|ref|YP_002809476.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|298499121|ref|ZP_07008928.1| RNA methyltransferase [Vibrio cholerae MAK 757]
 gi|227008813|gb|ACP05025.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
 gi|297543454|gb|EFH79504.1| RNA methyltransferase [Vibrio cholerae MAK 757]
          Length = 244

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 17/155 (10%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKP-------------LEQEIKNDKIALILGAEGKGLRP 242
              L+   +     +G S+ S+               L  E K   +A++ G E  GL  
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRTLEWPMLEPRECGEKLISEAKQHSVAMVFGRERTGLTN 123

Query: 243 KTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
              +       +       +LN++ A  +  Y  +
Sbjct: 124 DELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|153216245|ref|ZP_01950345.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
 gi|124114390|gb|EAY33210.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
          Length = 244

 Score = 37.7 bits (87), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  LE  +   +              +A++ G E  GL 
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRT-LEWPMLEPRECGEKLISEANQHSVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +       +       +LN++ A  +  Y  +
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|153829408|ref|ZP_01982075.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
 gi|148875128|gb|EDL73263.1| RNA methyltransferase, TrmH family [Vibrio cholerae 623-39]
          Length = 244

 Score = 37.7 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  LE  +   +              +A++ G E  GL 
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRT-LEWPMLEPRECGEKLISEANQHSVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +       +       +LN++ A  +  Y  +
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|400752|sp|Q02997|PET56_SACKL RecName: Full=Ribose methyltransferase PET56; AltName: Full=21S
           rRNA [GM2251] 2'O-methyltransferase; AltName:
           Full=Mitochondrial large ribosomal RNA ribose methylase
          Length = 138

 Score = 37.7 bits (87), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 10/61 (16%)

Query: 11  KIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ---------PENLFLYGVHTVSAAL 61
            ++  K++HY++L+++    K+ Q    KS+++ +         P   ++YG ++V AAL
Sbjct: 79  DLYGKKEAHYSRLKQDILSSKRQQE-EHKSKYSRKSVTLGLRPNPLMEYIYGTNSVIAAL 137

Query: 62  N 62
           N
Sbjct: 138 N 138


>gi|294495933|ref|YP_003542426.1| hypothetical protein Mmah_1277 [Methanohalophilus mahii DSM 5219]
 gi|292666932|gb|ADE36781.1| protein of unknown function DUF127 [Methanohalophilus mahii DSM
           5219]
          Length = 175

 Score = 37.7 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  +GI+      PS +  + +                    ++K  S G +   L
Sbjct: 26  TARAFGAEGILLAS-NDPSITRSVTQLCQRWGGEFYIRNDVKWKTEIKKWKSEGGKVCHL 84

Query: 213 SSDSKKPLEQEIKN----DKIALILGAEGKGLRPKTQETATSMA 252
           S      L   + +    +K+ +++GAE   +  +  E A    
Sbjct: 85  SMYG-INLPDAVPSIRECEKLMIVVGAEK--VPFEVYELADWNV 125


>gi|296113398|ref|YP_003627336.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|295921092|gb|ADG61443.1| SpoU family tRNA/rRNA methyltransferase [Moraxella catarrhalis RH4]
 gi|326570114|gb|EGE20159.1| tRNA/rRNA methyltransferase [Moraxella catarrhalis BC8]
          Length = 294

 Score = 37.7 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 17/129 (13%)

Query: 154 AVAFSCDGIITTKR-------YSPSESAVLAKSASGALEHIPYIRISNLTD--ALQKMHS 204
           A A    GI+  K        ++  +  ++  +++ + +    +   ++    AL+++  
Sbjct: 56  ANAAGA-GILLDKACITKDIKHAIGDCTLIFAASARSRQMPRPVLTPSMAAQVALKQLSQ 114

Query: 205 WGFQ-TIGLSSDSKKPLEQEIKN--DKIALILGAEGKGLRPKTQETATSMAHLH--MPGI 259
              + T+  S D       ++ N   KIA++ G E +GL  +    A     +   +   
Sbjct: 115 TVSKNTLATSLDHMNQSADDLVNTLPKIAILFGREDRGLTNEELSLADYHIQIPANLNYP 174

Query: 260 IKALNVSNA 268
           +  LNV++A
Sbjct: 175 V--LNVASA 181


>gi|15640765|ref|NP_230395.1| RNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591445|ref|ZP_01678721.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121729723|ref|ZP_01682164.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|147675237|ref|YP_001216231.1| RNA methyltransferase [Vibrio cholerae O395]
 gi|153817241|ref|ZP_01969908.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|153822720|ref|ZP_01975387.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|229505640|ref|ZP_04395150.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
 gi|229510688|ref|ZP_04400167.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
 gi|229517810|ref|ZP_04407254.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
 gi|229530124|ref|ZP_04419514.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229608658|ref|YP_002879306.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254285464|ref|ZP_04960428.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|254847883|ref|ZP_05237233.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|255744553|ref|ZP_05418504.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
 gi|262161313|ref|ZP_06030424.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|262168806|ref|ZP_06036501.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
 gi|262190471|ref|ZP_06048722.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
 gi|9655191|gb|AAF93911.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546696|gb|EAX56875.1| RNA methyltransferase, TrmH family [Vibrio cholerae 2740-80]
 gi|121628540|gb|EAX61023.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
 gi|126512157|gb|EAZ74751.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
 gi|126519751|gb|EAZ76974.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
 gi|146317120|gb|ABQ21659.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|150424326|gb|EDN16263.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
 gi|227012570|gb|ACP08780.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
 gi|229333898|gb|EEN99384.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae 12129(1)]
 gi|229344525|gb|EEO09499.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC9]
 gi|229350653|gb|EEO15594.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae B33]
 gi|229357863|gb|EEO22780.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae BX 330286]
 gi|229371313|gb|ACQ61736.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae MJ-1236]
 gi|254843588|gb|EET22002.1| RNA methyltransferase [Vibrio cholerae MO10]
 gi|255737584|gb|EET92978.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholera CIRS 101]
 gi|262022924|gb|EEY41630.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae RC27]
 gi|262029063|gb|EEY47716.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae INDRE 91/1]
 gi|262033643|gb|EEY52132.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae CT 5369-93]
 gi|327483533|gb|AEA77940.1| tRNA:Cm32/Um32 methyltransferase [Vibrio cholerae LMA3894-4]
          Length = 244

 Score = 37.7 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTTHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  LE  +   +              +A++ G E  GL 
Sbjct: 64  YPTLEAAVADCGLVVGTSARSRT-LEWPMLEPRECGEKLISEANQHSVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +       +       +LN++ A  +  Y  +
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|73670636|ref|YP_306651.1| tRNA 2'-O-methylase [Methanosarcina barkeri str. Fusaro]
 gi|121724610|sp|Q466X1|TRM56_METBF RecName: Full=tRNA ribose 2'-O-methyltransferase aTrm56
 gi|72397798|gb|AAZ72071.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 177

 Score = 37.7 bits (87), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A     +G++      P   A L    S    +       N    +++  + G +   L
Sbjct: 26  TARLLGAEGMLLAS-NDPGIIATLEDVVSRWGGNFYIKNNVNYKQEIKEWKAAGGKVCHL 84

Query: 213 SSDS---KKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMA 252
           S          ++    DK+ +++GAE   + P+  + A    
Sbjct: 85  SMYGINLPDVTDELKSCDKLMIVVGAEK--VPPEIYQLADWNV 125


>gi|144900197|emb|CAM77061.1| rRNA methylase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 244

 Score = 37.7 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 19/136 (13%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-SNLTDALQKMHS 204
           NIG   R+ +      +          S     +ASGA   +   +I     +A+  ++ 
Sbjct: 8   NIGTAARAMLNNGLTDLRLVAPRPDWLSDRAIAAASGADRVVLGAKIFDTTAEAVADLN- 66

Query: 205 WGFQTIGLSSDSK---KPLEQ-----------EIKNDKIALILGAEGKGLRPKTQETATS 250
              +    ++ ++   KP++            +    K  ++ G E  GL       A +
Sbjct: 67  ---RVWATTARNRFMVKPVDTPKSAALAMRALDADGQKFGVMFGPERTGLENDDVALADT 123

Query: 251 MAHLHMPGIIKALNVS 266
           +  + +     +LN++
Sbjct: 124 VVTVPLNPDYSSLNLA 139


>gi|119719463|ref|YP_919958.1| hypothetical protein Tpen_0549 [Thermofilum pendens Hrk 5]
 gi|119524583|gb|ABL77955.1| protein of unknown function DUF358 [Thermofilum pendens Hrk 5]
          Length = 210

 Score = 37.7 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 189 YIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGK-GLRPKTQET 247
             + + L D +  +   G+    L  +           + +A +LG     G+       
Sbjct: 115 VEKGARLVDVVSLLKGAGYPVYLLDENG-LSYANVNLEEPVAFVLG--DHIGIPADLLRQ 171

Query: 248 ATSMA 252
            T + 
Sbjct: 172 VTRLV 176


>gi|294634463|ref|ZP_06712999.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Edwardsiella
          tarda ATCC 23685]
 gi|291092173|gb|EFE24734.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Edwardsiella
          tarda ATCC 23685]
          Length = 30

 Score = 37.3 bits (86), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 48 NLFLYGVHTVSAALNNPSRKIFQLLATKN 76
          +  +YG+H V A L    ++  ++   K 
Sbjct: 2  SEIIYGIHAVKALLERDPQRFLEVFVMKG 30


>gi|2245119|emb|CAB10541.1| TRP-185 like protein [Arabidopsis thaliana]
 gi|7268513|emb|CAB78764.1| TRP-185 like protein [Arabidopsis thaliana]
          Length = 1493

 Score = 37.3 bits (86), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 116  LETAPLLSPTLDAVRNSQLLM--VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSES 173
            L +  +    L + R S +L+  ++D +  P N+  + R+   F    +      S    
Sbjct: 1235 LRSRSMEVERLKSGRQSLILVASLVDRI--P-NLAGLARTCEVFKASSLAVADA-SIIHD 1290

Query: 174  AVLAKSASGALEHIPY--IRISNLTDALQKMHSWGFQTIGLSSDS-KKPLEQEIKNDKI 229
                  +  A + +P   + +++L   L+K    GF  +GL   +    L++     K 
Sbjct: 1291 KQFQLISVTAEKWVPIMEVPVNSLKLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKT 1349


>gi|83942524|ref|ZP_00954985.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
           sp. EE-36]
 gi|83953745|ref|ZP_00962466.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
           NAS-14.1]
 gi|83841690|gb|EAP80859.1| RNA methyltransferase, TrmH family, group 1 [Sulfitobacter sp.
           NAS-14.1]
 gi|83846617|gb|EAP84493.1| RNA methyltransferase, TrmH family protein, group 1 [Sulfitobacter
           sp. EE-36]
          Length = 250

 Score = 37.3 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 19/148 (12%)

Query: 146 NIGAILRSAVAFSCD--GIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMH 203
           NIGA  R+   F  D   I+  +   P+ SAV   S +G L     I   +L  A+    
Sbjct: 23  NIGAAARAMWNFGLDRMRIVAPRDGWPNPSAVAMASGAGRLLDEAVIY-DDLAGAVGD-A 80

Query: 204 SWGFQTIGLSSDSKKPLEQEIK-----------NDKIALILGAEGKGLRPKTQETATSMA 252
           ++ F T     D  KP+                  +++++ G E  GL       A ++ 
Sbjct: 81  AFVFATTARDRDLTKPVYSPEAAMAKAAQMIREGRRVSVLFGPERAGLENDDISRANAIV 140

Query: 253 HLHMPGIIKALNVSNAAAVAL--YITQN 278
            + +     +LN++    V L  Y    
Sbjct: 141 SVPVNPAFASLNLAQC--VLLMGYEWMR 166


>gi|308158028|gb|EFO60908.1| TAR RNA loop binding protein, putative [Giardia lamblia P15]
          Length = 1597

 Score = 37.3 bits (86), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 146  NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY--IRISNLTDALQKMH 203
            N+G + R+A AF  D ++     S +        +  A   +    +R   L   + +  
Sbjct: 1538 NLGGLARTAEAFGLDSLVLGSA-SFALDPSFKAMSMTADMWLNIEEVRPYKLAQWIAEKR 1596

Query: 204  S 204
             
Sbjct: 1597 K 1597


>gi|303318423|ref|XP_003069211.1| HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240108897|gb|EER27066.1| HAD-superfamily subfamily IIA hydrolase, TIGR01456, CECR5
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320039103|gb|EFW21038.1| phosphatidyl synthase [Coccidioides posadasii str. Silveira]
          Length = 443

 Score = 37.3 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 16/100 (16%)

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH---IPYIRISN------LTDALQKM 202
           R A AF  DG++     +   +    K  +G  E+   +PYI ++N          L   
Sbjct: 88  RYAFAFDIDGVLVRGGRAIPAAIEALKVLNGQNEYGIKVPYIFVTNGGGKTEEERCLDLS 147

Query: 203 HSWGFQTIGLSSD----SKKPLEQEIKNDKIALILGAEGK 238
               ++    S         P+ +  +  K  L++G EG+
Sbjct: 148 RQLEYEV---SPGQFICGHTPMREMAEKYKTVLVVGGEGE 184


>gi|119175588|ref|XP_001239991.1| hypothetical protein CIMG_09612 [Coccidioides immitis RS]
          Length = 443

 Score = 37.3 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 16/100 (16%)

Query: 152 RSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH---IPYIRISN------LTDALQKM 202
           R A AF  DG++     +   +    K  +G  E+   +PYI ++N          L   
Sbjct: 88  RYAFAFDIDGVLVRGGRAIPAAIEALKVLNGQNEYGIKVPYIFVTNGGGKTEEERCLDLS 147

Query: 203 HSWGFQTIGLSSD----SKKPLEQEIKNDKIALILGAEGK 238
               ++    S         P+ +  +  K  L++G EG+
Sbjct: 148 RQLEYEV---SPGQFICGHTPMREMAEKYKTVLVVGGEGE 184


>gi|325922629|ref|ZP_08184379.1| exo-1,4-beta-glucosidase [Xanthomonas gardneri ATCC 19865]
 gi|325546892|gb|EGD17996.1| exo-1,4-beta-glucosidase [Xanthomonas gardneri ATCC 19865]
          Length = 888

 Score = 37.3 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL         D    A + G+EG+G+       A    
Sbjct: 586 IKKLKAEGIPVVAVFLSGR-PLWMNQYINAADAFVAAWLPGSEGEGIADVLLRKADGTV 643


>gi|285019046|ref|YP_003376757.1| hypothetical protein XALc_2284 [Xanthomonas albilineans GPE PC73]
 gi|283474264|emb|CBA16765.1| hypothetical protein XALc_2284 [Xanthomonas albilineans]
          Length = 35

 Score = 37.3 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 233 LGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
           +GAE   +     +       +   G +++L
Sbjct: 1   MGAERDSMDRSFAQACDLRLSIPGSGALESL 31


>gi|262172183|ref|ZP_06039861.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
 gi|261893259|gb|EEY39245.1| tRNA:Cm32/Um32 methyltransferase [Vibrio mimicus MB-451]
          Length = 244

 Score = 37.3 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 19/156 (12%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL   +   NIG+  R+        ++        +  V A++ + A         + +
Sbjct: 8   VVLVGTSHSGNIGSAARAMKVMGLSQMVL----VDPQCQVDAQAIALAAGASEIALNAQI 63

Query: 196 TDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDK--------------IALILGAEGKGLR 241
              L+   +     +G S+ S+  L+  +   +              +A++ G E  GL 
Sbjct: 64  FPTLEAAVADCGLVVGTSARSRT-LDWPMLEPRQCGEKLIAEASQHTVAMVFGRERTGLT 122

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQ 277
               +       +       +LN++ A  +  Y  +
Sbjct: 123 NDELQLCHYHVCVPANPEYSSLNLAMAVQLLSYEVR 158


>gi|192361998|ref|YP_001980747.1| glucan 1,4-beta-glucosidase cel3C [Cellvibrio japonicus Ueda107]
 gi|190688163|gb|ACE85841.1| glucan 1,4-beta-glucosidase, putative, cel3C [Cellvibrio japonicus
           Ueda107]
          Length = 848

 Score = 37.3 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 180 ASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALIL----GA 235
             G +  + Y    +L   L+K+ + G + + L    +        N   A ++    G 
Sbjct: 534 MQGDVNSLLYQNEQDLA-LLKKLRAEGIKVVALFITGRPLWANSFINASDAFVVVWQPGT 592

Query: 236 EGKGLRPKTQETATSMAHLHMPGII---------KA-LNVSNA 268
           E  G+       A    +    G +         ++ LNV  A
Sbjct: 593 EANGIADVVLANADGSVNHDFKGQLSFSWPADPGQSPLNVGQA 635


>gi|148554055|ref|YP_001261637.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas wittichii RW1]
 gi|148499245|gb|ABQ67499.1| tRNA/rRNA methyltransferase (SpoU) [Sphingomonas wittichii RW1]
          Length = 253

 Score = 37.3 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 12/154 (7%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
              ++VL       NIG   R+ + F    +          +     +ASGA   +   R
Sbjct: 18  PPPVIVLVRPQLGENIGKAARAMLNFGLTEMRLVTPRDGWPNPQAGPAASGADIVLEGAR 77

Query: 192 I-SNLTDALQKM--------HSWGF-QTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLR 241
           +  ++ +A               G  + +    ++ + +  E    + A++ G E  GL 
Sbjct: 78  VFDSVAEATADCAHVYATTVRKRGVTKPVMTPEEAARGIHGE--PGRSAILFGPERSGLE 135

Query: 242 PKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
                 A ++  + +     +LN++ A  +  Y 
Sbjct: 136 TDDVAVARTIVTVPINPEFGSLNLAQAVILVAYE 169


>gi|84489959|ref|YP_448191.1| hypothetical protein Msp_1167 [Methanosphaera stadtmanae DSM 3091]
 gi|121696502|sp|Q2NF55|TRM56_METST RecName: Full=tRNA ribose 2'-O-methyltransferase aTrm56
 gi|84373278|gb|ABC57548.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091]
          Length = 175

 Score = 36.9 bits (85), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 153 SAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGL 212
           +A AF  D +I +  +         K                    +++    GF+ I L
Sbjct: 24  TARAFGADKVILSGEHDKHIIESAQKVVENWGGDFEVEYQKAYRPVIKEHKQKGFEIIHL 83

Query: 213 SSDSKKPLE-----QEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSN 267
           +   K   +     ++   DK+ +I+G  G  +     E A     +      +      
Sbjct: 84  TMYGKHVEDVVPTIRDNNRDKL-IIVG--GSRVPTDVYEAADWNLSVTNQPHSE-----V 135

Query: 268 AA-AVALY 274
           AA A+ L+
Sbjct: 136 AALAICLH 143


>gi|163793528|ref|ZP_02187503.1| alpha/beta hydrolase fold protein [alpha proteobacterium BAL199]
 gi|159181330|gb|EDP65845.1| alpha/beta hydrolase fold protein [alpha proteobacterium BAL199]
          Length = 285

 Score = 36.9 bits (85), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 28/130 (21%)

Query: 150 ILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQT 209
           I+R+      DG +  + +   E  VL     G+  H            +  + + G++ 
Sbjct: 22  IVRTPCG---DGSMVWRVWGAGEPVVLLHGGFGSWNH--------WVRNIDALAAAGYRV 70

Query: 210 IGLSS----DSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHL---HMPGIIKA 262
           I        DS  P      ++  A++      G+R  T E+      L      G+I +
Sbjct: 71  IAADMPGQGDSDDPPFPYDADNLAAIV----ADGIRQLTTES--EQVRLVCFSFGGVIGS 124

Query: 263 LNVSNAAAVA 272
                AAA+ 
Sbjct: 125 ----VAAALL 130


>gi|294664121|ref|ZP_06729513.1| glucan 1,4-beta-glucosidase precursor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606109|gb|EFF49368.1| glucan 1,4-beta-glucosidase precursor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 888

 Score = 36.9 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 586 IKKLKAEGIPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGSV 643


>gi|21242538|ref|NP_642120.1| glucan 1,4-beta-glucosidase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107992|gb|AAM36656.1| glucan 1,4-beta-glucosidase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 870

 Score = 36.9 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 568 IKKLKAEGIPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGSV 625


>gi|294507786|ref|YP_003571844.1| DNA-directed RNA polymerase beta chain [Salinibacter ruber M8]
 gi|294344114|emb|CBH24892.1| DNA-directed RNA polymerase beta chain [Salinibacter ruber M8]
          Length = 1335

 Score = 36.9 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 34/179 (18%)

Query: 60   ALNNPSRKIFQLLAT-KNALARLDWDANLPHPF----PVKTVPPQTI---DKIVGKEAVH 111
             L N   +   +  T K    +++    LP        V     + I   DK+ G+    
Sbjct: 1063 LLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKVYVARKKKIEVGDKMAGRHGN- 1121

Query: 112  QGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            +G+  + AP+   P LD      L++    V    N+G I  +       G         
Sbjct: 1122 KGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYET--LLGWAG--------- 1170

Query: 171  SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                       G     P    ++L D   ++   G        D K  L      +  
Sbjct: 1171 --------DRLGVKYATPIFDGASLEDVGDELEKAGLP-----RDGKVQLYDGRTGEPF 1216


>gi|109914393|sp|Q2S1Q5|RPOB_SALRD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
            subunit beta; AltName: Full=RNA polymerase subunit beta;
            AltName: Full=Transcriptase subunit beta
          Length = 1287

 Score = 36.9 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 34/179 (18%)

Query: 60   ALNNPSRKIFQLLAT-KNALARLDWDANLPHPF----PVKTVPPQTI---DKIVGKEAVH 111
             L N   +   +  T K    +++    LP        V     + I   DK+ G+    
Sbjct: 1015 LLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKVYVARKKKIEVGDKMAGRHGN- 1073

Query: 112  QGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            +G+  + AP+   P LD      L++    V    N+G I  +       G         
Sbjct: 1074 KGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYET--LLGWAG--------- 1122

Query: 171  SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                       G     P    ++L D   ++   G        D K  L      +  
Sbjct: 1123 --------DRLGVKYATPIFDGASLEDVGDELEKAGLP-----RDGKVQLYDGRTGEPF 1168


>gi|83816372|ref|YP_445876.1| DNA-directed RNA polymerase subunit beta [Salinibacter ruber DSM
            13855]
 gi|83757766|gb|ABC45879.1| DNA-directed RNA polymerase, beta subunit [Salinibacter ruber DSM
            13855]
          Length = 1335

 Score = 36.9 bits (85), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 34/179 (18%)

Query: 60   ALNNPSRKIFQLLAT-KNALARLDWDANLPHPF----PVKTVPPQTI---DKIVGKEAVH 111
             L N   +   +  T K    +++    LP        V     + I   DK+ G+    
Sbjct: 1063 LLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKVYVARKKKIEVGDKMAGRHGN- 1121

Query: 112  QGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSP 170
            +G+  + AP+   P LD      L++    V    N+G I  +       G         
Sbjct: 1122 KGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYET--LLGWAG--------- 1170

Query: 171  SESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKI 229
                       G     P    ++L D   ++   G        D K  L      +  
Sbjct: 1171 --------DRLGVKYATPIFDGASLEDVGDELEKAGLP-----RDGKVQLYDGRTGEPF 1216


>gi|120611002|ref|YP_970680.1| tRNA/rRNA methyltransferase SpoU [Acidovorax citrulli AAC00-1]
 gi|120589466|gb|ABM32906.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax citrulli AAC00-1]
          Length = 162

 Score = 36.9 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 21/141 (14%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           N+G ++R+A  +    +           A        A +HIP I +  L DA+      
Sbjct: 19  NMGEVMRAAGCYDVRLVAVAGHR----FARAPTDTQEAWKHIPTIEVPALLDAMPV---G 71

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLH----MPGIIK 261
                     S  PL Q +  ++   ILG E   L  +  +    +  +     M     
Sbjct: 72  AVPVAVEFIPSATPLPQFVHPERAFYILGPEDGSLPAEIVQQCRHVVFVPTRFCM----- 126

Query: 262 ALNVSNAAAVALYITQNHFAK 282
             N++    V LY   +  AK
Sbjct: 127 --NLAATVNVLLY---DRLAK 142


>gi|294626051|ref|ZP_06704660.1| glucan 1,4-beta-glucosidase precursor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599653|gb|EFF43781.1| glucan 1,4-beta-glucosidase precursor [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 888

 Score = 36.9 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 586 IKKLKAEGIPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGSV 643


>gi|330953692|gb|EGH53952.1| type III effector Hrp-dependent outer [Pseudomonas syringae Cit 7]
          Length = 423

 Score = 36.9 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 15/119 (12%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
            + LD + DP  +   LRSA+      ++       S+   LA ++ G  + + ++  + 
Sbjct: 164 WLGLDAIRDPAGLKTALRSALEQGVQ-VLVCDAELDSDLLRLADASVGWHDELFWVGSAG 222

Query: 195 LTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAH 253
           L   L        Q  GL++  +  +        +  ++G+    +   +Q  A  +AH
Sbjct: 223 LARHLP-------QAFGLAAALQISVR---PRSPVLTVIGS----MSRHSQAQADRLAH 267


>gi|167627612|ref|YP_001678112.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|241668183|ref|ZP_04755761.1| rRNA methylase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876718|ref|ZP_05249428.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597613|gb|ABZ87611.1| rRNA methylase, SpoU family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842739|gb|EET21153.1| rRNA methyltransferase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 249

 Score = 36.9 bits (85), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 21/160 (13%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR-ISN 194
           +VL   +   N+G+  R+ +      +                 +  A E +   R + N
Sbjct: 10  IVLVEPSHSGNVGSTARAMLNMGLTNLWLVNPK-KGIDDEAIALSCHATEVVKNARIVPN 68

Query: 195 LTDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKND-KIALILGAEGKG 239
           L +AL  +       +G S+               +   L +  K+D KIA++ G E  G
Sbjct: 69  LQEALDDID----YVVGTSARVRRVSLPIEPISKVATNILNKIQKSDEKIAILFGRERTG 124

Query: 240 LRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYITQNH 279
           L  +    +   A++       +LN++ A  +  Y     
Sbjct: 125 LLNEELLMSNVHAYIPSNEGYTSLNLAQAVQLVAYEIYKQ 164


>gi|330814239|ref|YP_004358478.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487334|gb|AEA81739.1| tRNA/rRNA methyltransferase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 126

 Score = 36.9 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 232 ILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALY 274
           + G E  GL  +   +A  +  +      ++LN+S+A +V  Y
Sbjct: 1   MFGPENAGLSNEDLISANYLLKIPSDAKYESLNLSHAVSVVAY 43


>gi|320450456|ref|YP_004202552.1| DNA-binding response regulator, LuxR family [Thermus scotoductus
           SA-01]
 gi|320150625|gb|ADW22003.1| DNA-binding response regulator, LuxR family [Thermus scotoductus
           SA-01]
          Length = 206

 Score = 36.9 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 72/191 (37%), Gaps = 24/191 (12%)

Query: 58  SAALNNPSRKIFQLLATKNALARLDWDANLPHPFPVKTVP----PQTIDKIVGKEAVHQG 113
            A + NP  ++  L+A  + L RL   A L     V         + ++K +      + 
Sbjct: 3   KARMGNPGSRLRVLIADDHPLFRLGLRAGLEGEGLVVVAEAQDGKEALEKTLA--LNPEA 60

Query: 114 LALETAPLLSPTLDAVRN------SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
           + L+    +   L+  R       S L+ +L    +P    A++R A     D   + + 
Sbjct: 61  VLLDLRMPVLDGLECTRMLRKKGYSGLVALLTTYQEP----ALVREAFLAGADAYFSKEL 116

Query: 168 YSPSESAVLAKSASGALEHIP--YIRISNLTDALQKMHSWGFQT------IGLSSDSKKP 219
            +P     L + A G  +  P     +++  + + ++ + G         +GLS D+ K 
Sbjct: 117 SAPELKRRLLRVAQGEEKLKPPDLPSLTSREEEVLRLLAQGLSVKEMAKALGLSPDTVKD 176

Query: 220 LEQEIKNDKIA 230
             + +    +A
Sbjct: 177 HLESLYGKLLA 187


>gi|23008544|ref|ZP_00049946.1| COG0565: rRNA methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 155

 Score = 36.9 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 19/136 (13%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRI-S 193
           +++L       NIG   R+   F    +      +      + ++ASGA   +    + +
Sbjct: 5   VVILVEPQLAENIGMTARAMANFGLSELRLVAPKNGWPKKGVREAASGATHVLDAATVYA 64

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEI--------------KNDKIALILGAEGKG 239
            + +A+  +H      +  ++  +  +++                + +++ L+ G E  G
Sbjct: 65  TVPEAIADLH----HLLATTARERGQMKRVFAPEEAMTATAGRIGRGERVGLMFGRERVG 120

Query: 240 LRPKTQETATSMAHLH 255
           L       A ++    
Sbjct: 121 LSNDEVSLADAIVTFP 136


>gi|297744670|emb|CBI37932.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score = 36.9 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 3   LISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
            I   +S +        + KL  + +  K++++   K +  S+      YG++++  A++
Sbjct: 79  FIFNVESGRTKFFPCRMFKKLVSSCKVGKEIEAIQIKIQDISKSRET--YGINSIGEAIS 136

Query: 63  NPSRKIFQL-----LATKNALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLALE 117
              +++ +L     L  +  +  L  D +      VK    +    +VG +   +   ++
Sbjct: 137 QAGQRLQKLRYISPLVKEEIIVGLKEDTDKLVEELVKGDERRRAVSMVGMDEARKIEKMQ 196

Query: 118 TAPLLSPTLDAVRNSQLLMVLDHV 141
                    + ++  + L+VLD V
Sbjct: 197 EHEFGDFLHELLKEQRFLVVLDDV 220


>gi|254787763|ref|YP_003075192.1| RNA methyltransferase [Teredinibacter turnerae T7901]
 gi|237684601|gb|ACR11865.1| putative tRNA/rRNA methyltransferase LasT [Teredinibacter turnerae
           T7901]
          Length = 233

 Score = 36.9 bits (85), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 15/146 (10%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L  +L +   P N+GA  R+        +I                A GA      +  +
Sbjct: 2   LSFILVNPARPANVGAAARAMKTMGFKQLILVG-SDIHLDEEAHWVAHGAQ---DILTSA 57

Query: 194 NLTDALQKMHSWGFQTIGLSSDSKKPLEQEIK-----------NDKIALILGAEGKGLRP 242
                L  +       IG ++  +    + +            + +  L+ G E  GL  
Sbjct: 58  TCYPDLASLKPDFDLLIGTTARERGSARRYLSPPELNSQLSQQSGRSGLVFGCEASGLSN 117

Query: 243 KTQETATSMAHLHMPGIIKALNVSNA 268
                    +++ +     +LN+  A
Sbjct: 118 DQLALCDLYSYIPLATPYPSLNLGQA 143


>gi|289665257|ref|ZP_06486838.1| glucan 1,4-beta-glucosidase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 888

 Score = 36.9 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 586 IKKLKADGVPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGTV 643


>gi|289667267|ref|ZP_06488342.1| glucan 1,4-beta-glucosidase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 888

 Score = 36.9 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 586 IKKLKADGVPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGTV 643


>gi|320531522|ref|ZP_08032474.1| HAD-superfamily hydrolase, subfamily IIA [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136261|gb|EFW28257.1| HAD-superfamily hydrolase, subfamily IIA [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 366

 Score = 36.9 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 160 DGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDA----LQKMHSWGFQ-----TI 210
           DG+          +A    +A  A  H+ ++  +N + A    + K+ + G         
Sbjct: 34  DGVCFAGEARVPHAADNVNAARRAGMHLSFV-TNNASRAPQTVVDKLVANGITAEASEVF 92

Query: 211 GLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQE 246
             + D+   L + I+     L++G  G G+R    +
Sbjct: 93  SAAMDAAAMLTEHIEPGSTVLVVG--GDGVRQALLD 126


>gi|320354479|ref|YP_004195818.1| hypothetical protein Despr_2386 [Desulfobulbus propionicus DSM
           2032]
 gi|320122981|gb|ADW18527.1| Protein of unknown function DUF2168 [Desulfobulbus propionicus DSM
           2032]
          Length = 209

 Score = 36.9 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-VSN--AAAVAL 273
           +  + L+ G    GL P+    A  +    + G  +  N +S   AA++ +
Sbjct: 130 DRPVLLLFGT-AWGLSPEVLAMADGILP-PLCGNTE-FNHLSVRSAASIIM 177


>gi|298709142|emb|CBJ31087.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 118

 Score = 36.6 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 134 LLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRIS 193
           L +V+ +++   NI +++ SAVAF  + +I  +     + ++   +  G    I + R S
Sbjct: 15  LFLVIANISKRCNIRSLIASAVAFQAEILIVGQ----PKFSIETHAPRGLPPGITFTRFS 70

Query: 194 NLTDALQKMHSWGFQTIGLS-SDSKKPLEQEIKNDKIALILGAEGK 238
           +L      +HS G   IG+      + +++E      A + G E  
Sbjct: 71  DLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNEAS 116


>gi|115523621|ref|YP_780532.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115517568|gb|ABJ05552.1| RNA methyltransferase, TrmH family, group 1 [Rhodopseudomonas
           palustris BisA53]
          Length = 397

 Score = 36.6 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 15/158 (9%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPY-IRIS 193
           +++L       NIG   R+   F    +   K      +    +SA+GA   +   +   
Sbjct: 19  VVILVEPQLGENIGMCARAMGNFGLTRLRLVKPRDGWPNLHAQRSAAGADYILDAAVLFD 78

Query: 194 NLTDALQKM----------HSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
           ++ DA++            H      +   + + +   +      + ++ G E  GL  +
Sbjct: 79  SVEDAVKDCSLLFASTARAHDQAKPVVAPEAAAAEMTAEIAGGGNVGILFGRERYGLENQ 138

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL--YITQNH 279
               A  +    +     +LN++ A  V L  Y    H
Sbjct: 139 EVALANRIITFPVNPAFASLNLAQA--VLLVGYEWFKH 174


>gi|108804981|ref|YP_644918.1| DNA-directed RNA polymerase subunit beta [Rubrobacter xylanophilus
           DSM 9941]
 gi|122381569|sp|Q1AU22|RPOB_RUBXD RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
           subunit beta; AltName: Full=RNA polymerase subunit beta;
           AltName: Full=Transcriptase subunit beta
 gi|108766224|gb|ABG05106.1| DNA-directed RNA polymerase, beta subunit [Rubrobacter xylanophilus
           DSM 9941]
          Length = 1141

 Score = 36.6 bits (84), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 16/144 (11%)

Query: 91  FPVKTVPPQTI---DKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHN 146
             V     + I   DK+ G+    +G+  +  P    P ++      +++    V    N
Sbjct: 842 VRVFVATKRKIAEGDKLAGRHGN-KGVISKIVPEEDMPFMEDGTPVDVILSPLGVPSRMN 900

Query: 147 IGAILRSAV-AFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           IG IL + +   +  G+          S  +   A           ++++ +A+ K+   
Sbjct: 901 IGQILETHLGWAASKGLGENGGEPVFVSTPVFSGA----------TVADINEAIDKVRRN 950

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKI 229
           G   +G+S   K  L      +  
Sbjct: 951 GAAEVGMSGGGKVTLYDGRTGEPF 974


>gi|310820269|ref|YP_003952627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
 gi|309393341|gb|ADO70800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score = 36.6 bits (84), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 20/152 (13%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISNL 195
           VL    +  N+GA  R+          T  R    +     + A  A E +    R  +L
Sbjct: 8   VLMRPRNAENLGAAARAMKNCGLSE-WTWVRPEAEDLGPARRLAVHAEELLDGVRREDSL 66

Query: 196 TDALQKMHSWGFQTIGLSS---DSKKPLE---------QEIKNDKIALILGAEGKGLRPK 243
             A+          +G SS   + K+ L                 +A++ G E  GL   
Sbjct: 67  EAAVADC----VWVVGTSSRKVEGKRRLLPRAVGEELVARAAQGPVAIVFGDERSGLTNA 122

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             E    ++ +       ++N++ A  V LY 
Sbjct: 123 EVERCHDLSAVPTDPSQPSINLAQA--VLLYA 152


>gi|227327954|ref|ZP_03831978.1| hypothetical protein PcarcW_11720 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 442

 Score = 36.6 bits (84), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 181 SGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIA----LILGAE 236
           + A  H+  +R +NL D LQ++   G + I L +D +  L   +   +      L++G+ 
Sbjct: 169 AVAEIHLDDVRQNNLADRLQQLADEGVRLIILDTDEQDDLTHIVHAARTLPFRPLLVGS- 227

Query: 237 GKGLRPKTQET 247
             GL      T
Sbjct: 228 -AGLSEALANT 237


>gi|169837950|ref|ZP_02871138.1| hypothetical protein cdivTM_12794 [candidate division TM7
           single-cell isolate TM7a]
          Length = 35

 Score = 36.6 bits (84), Expect = 4.1,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 251 MAHLHMPGIIKALNVSNAAAVALY 274
              +   G  +++NV  A+ + LY
Sbjct: 1   TIFIPQRGSTRSVNVGVASGIVLY 24


>gi|218682399|ref|ZP_03530000.1| RNA methyltransferase, TrmH family, group 1 [Rhizobium etli CIAT
           894]
          Length = 225

 Score = 36.6 bits (84), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 21/118 (17%)

Query: 171 SESAVLAKSASGALEHIPYIRI-SNLTDALQKMHSWGFQTIGLSS---DSKKPLEQEI-- 224
             +     +AS A   I   ++   L  A+  ++         ++   D  KP+   +  
Sbjct: 1   WPNEKALATASKADHVIAATKVYDTLEQAVADLN----FVYATTARERDGYKPVRSPVIA 56

Query: 225 ---------KNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
                      +   ++ G E  GL  +    A  +    +     +LN++ A  V L
Sbjct: 57  AETLRAKFRAGEGTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQA--VLL 112


>gi|294677143|ref|YP_003577758.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
           1003]
 gi|294475963|gb|ADE85351.1| tRNA/rRNA methyltransferase, SpoU family [Rhodobacter capsulatus SB
           1003]
          Length = 245

 Score = 36.6 bits (84), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 20/150 (13%)

Query: 146 NIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSW 205
           NIGA  R+ + F+   +          +      ASGA   +            + +   
Sbjct: 19  NIGAAARAMLNFALSTLRLVDPRDGWPNPKAVAMASGAAGKV-LDHAGVFPTTAEAIADC 77

Query: 206 GFQTIGLSSDSK---KPLEQ-----------EIKNDKIALILGAEGKGLRPKTQETATSM 251
            F     ++  +   KP+                  ++ ++ G E  GL       A ++
Sbjct: 78  DF-VFATTARGRELTKPIYTPEAAMAEARARIAAGQRVGVMFGPERTGLENDDIIRANAI 136

Query: 252 AHLHMPGIIKALNVSNAAAVAL--YITQNH 279
             + +     +LN++ A  V L  Y     
Sbjct: 137 ITVPVNPEFFSLNLAQA--VLLTAYEFARQ 164


>gi|219122876|ref|XP_002181763.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407039|gb|EEC46977.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 261

 Score = 36.2 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIR 191
            ++ +++++ +   ++G I R A AF    I+       S        + GA  H+  I 
Sbjct: 10  PKIYLMIENPSKSTSLGPIFRCASAFGVKIIVVVGYAQCSVDG-----SHGASRHLEIIP 64

Query: 192 ISNLTDALQKMHS 204
                 A Q +  
Sbjct: 65  FPTAEQASQYIRD 77


>gi|170754840|ref|YP_001782758.1| U32 family peptidase [Clostridium botulinum B1 str. Okra]
 gi|169120052|gb|ACA43888.1| peptidase, U32 family [Clostridium botulinum B1 str. Okra]
          Length = 788

 Score = 36.2 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 4/139 (2%)

Query: 101 IDKIVGKEAVHQGLALETAPLLSPTL---DAVRNSQLLMVLDHVNDPHNIGAILRS-AVA 156
           +  I+G  + ++G   +   L    +   D       ++    + +  N+G ++++ A +
Sbjct: 178 MSSILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYILSPKDICNIENMGDLIKAGATS 237

Query: 157 FSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLSSDS 216
           F  +G +    Y         K+   A+    +    N  + +Q  +  GF    L  + 
Sbjct: 238 FKIEGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNK 297

Query: 217 KKPLEQEIKNDKIALILGA 235
            K +          L+LG 
Sbjct: 298 GKDMMAYSFPKNTGLLLGN 316


>gi|37931730|gb|AAP69228.1| guanosine-2'-O-methyltransferase [Torulaspora delbrueckii]
          Length = 158

 Score = 36.2 bits (83), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 6   KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQ--------PENLFLYGVHTV 57
           +K S  +F  K +H  KL +  +  K  +  +++              P   ++YG + V
Sbjct: 68  EKNSGDLFGKKKAHTDKLAQIDKQTKNERQEHERKFEKRSATQGLRVNPLMEYVYGTNGV 127

Query: 58  SAALNNPSRKIF 69
            AAL    R+ F
Sbjct: 128 LAALQGGKREYF 139


>gi|294011000|ref|YP_003544460.1| DNA-directed RNA polymerase subunit beta [Sphingobium japonicum
            UT26S]
 gi|292674330|dbj|BAI95848.1| DNA-directed RNA polymerase subunit beta [Sphingobium japonicum
            UT26S]
          Length = 1387

 Score = 36.2 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 51/135 (37%), Gaps = 11/135 (8%)

Query: 58   SAALNNPSRKIFQLLATK--NALARLDWDANLPHPF----PVKTVPPQTI---DKIVGKE 108
              A+     +  +L+  K  + + +L     LP        V     + +   DK+ G+ 
Sbjct: 1036 IEAVKAQYDEAVKLIVEKFEDRVDKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRH 1095

Query: 109  AVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKR 167
               +G+     P+   P L+   +  +++    V    N+G I  + + ++  G+    +
Sbjct: 1096 GN-KGVISRILPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIFETHLGWAARGLGQQLK 1154

Query: 168  YSPSESAVLAKSASG 182
            ++  E      +A G
Sbjct: 1155 HALEEWREANPNAQG 1169


>gi|124485957|ref|YP_001030573.1| hypothetical protein Mlab_1137 [Methanocorpusculum labreanum Z]
 gi|124363498|gb|ABN07306.1| RNA methyltransferase, TrmH family, group 1 [Methanocorpusculum
           labreanum Z]
          Length = 248

 Score = 36.2 bits (83), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 28/152 (18%)

Query: 145 HNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDALQKMHS 204
            NIG   R    F    ++      P  +      +S A + +      +L +   +   
Sbjct: 15  GNIGFAARVMKNFGFHNMVLV--NPPKLTMECTARSSHAKDVLENAERISLEEVFARSDL 72

Query: 205 WGFQTIGLSSDSKKPLEQEIK------------NDKIALILGAEGKGLRPKTQETATSMA 252
               T GLS     P+                 + +I+++ G E  GL  +       + 
Sbjct: 73  CIATTGGLSKSVSNPMRMPYYSVAELREMIEGIDGRISILFGRENWGLNNEEIAKCDIVC 132

Query: 253 HLH-------MPGIIKALNVSNAAAVALYITQ 277
            +        M       N+S+A  +  Y   
Sbjct: 133 TIPTSDEYPIM-------NISHAIGIVCYELA 157


>gi|88797963|ref|ZP_01113550.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
 gi|88779160|gb|EAR10348.1| rRNA methyltransferase, TrmH family protein [Reinekea sp. MED297]
          Length = 239

 Score = 36.2 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 43/133 (32%), Gaps = 19/133 (14%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL       NIGA  R+        ++             +++       +  +  +N+
Sbjct: 7   IVLIRTWHAGNIGATARAMKNMGLSNLVLVDPVDFPSDEATSRAGQ----AVDLLEQANV 62

Query: 196 TDALQKM------------HSWGFQTIGLSSDS--KKPLEQEIKNDKIALILGAEGKGLR 241
              L++                  +   L++++  +K   +      +A++ G E  GL 
Sbjct: 63  VATLEEAIADCNLVIGTSARDRSIRLPALTAEACAEKACRESD-QGTVAIVFGRERMGLS 121

Query: 242 PKTQETATSMAHL 254
            +  +      ++
Sbjct: 122 NEEIQQCHFQLNI 134


>gi|325924965|ref|ZP_08186391.1| exo-1,4-beta-glucosidase [Xanthomonas perforans 91-118]
 gi|325544628|gb|EGD15985.1| exo-1,4-beta-glucosidase [Xanthomonas perforans 91-118]
          Length = 888

 Score = 36.2 bits (83), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 586 IKKLKADGIPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGSV 643


>gi|328952029|ref|YP_004369363.1| Imidazole glycerol phosphate synthase subunit hisH [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452353|gb|AEB08182.1| Imidazole glycerol phosphate synthase subunit hisH [Desulfobacca
           acetoxidans DSM 11109]
          Length = 216

 Score = 36.2 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 132 SQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEH-IPYI 190
           S L+ VLD   +  N+ +++RS +A      +        ++  +     GA    +  I
Sbjct: 3   SGLIAVLD--YEAGNLASVIRSLIALEAQATVIRNPAGVEQADRVIFPGVGAAGQAMANI 60

Query: 191 RISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIAL 231
           R   L  AL+  +  G   +G+   ++  L    +ND   L
Sbjct: 61  RRFGLDQALRHAYETGKPILGICLGAQIILHHSAENDTPCL 101


>gi|78047379|ref|YP_363554.1| glucan 1,4-beta-glucosidase precursor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035809|emb|CAJ23500.1| glucan 1,4-beta-glucosidase precursor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 888

 Score = 36.2 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 199 LQKMHSWGFQTIGLSSDSKKPLE---QEIKNDKI--ALILGAEGKGLRPKTQETATSMA 252
           ++K+ + G   + +    + PL        +D    A + G+EG+G+       A    
Sbjct: 586 IKKLKADGIPVVAVFLSGR-PLWMNQYINASDAFVAAWLPGSEGEGIADVLLRKADGSV 643


>gi|218678639|ref|ZP_03526536.1| hypothetical protein RetlC8_07049 [Rhizobium etli CIAT 894]
          Length = 186

 Score = 36.2 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 50  FLYGVHTVSAALNNPSRKIFQLLATKNALARLDW---DANLPHPFPVKTVPPQTIDKI-- 104
            + G H VSAA     R+I  +L T      + W   +AN  H  P+     + + +   
Sbjct: 66  LVDGWHRVSAAQRIGLRQIEAVLVTPKGPYEIPWLAAEANRRHGLPLSRADKRNVFQAYV 125

Query: 105 -VGKEAVHQGLALETAPLLSPTLDAV 129
             GK    +G A+++A  +   L+ +
Sbjct: 126 RAGKHRKGRGTAVKSAREMEKDLNGI 151


>gi|329119228|ref|ZP_08247915.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464575|gb|EGF10873.1| RNA methyltransferase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 269

 Score = 36.2 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
           + + L       + AL+ G E  GL  +  ++   +  +       +LN++ A  V  Y 
Sbjct: 124 APEILHTARAGCRAALVFGNETFGLSIEEVQSCNRLMTIAGNPAYFSLNLAQAVQVVAYE 183

Query: 276 TQNH 279
             + 
Sbjct: 184 LYSQ 187


>gi|218663166|ref|ZP_03519096.1| glutamate racemase [Rhizobium etli IE4771]
          Length = 450

 Score = 36.2 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 216 SKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVAL 273
           ++    +    +   ++ G E  GL  +    A  +    +     +LN++ A  V L
Sbjct: 21  AETLRTKFRAGEATGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQA--VLL 76


>gi|229817080|ref|ZP_04447362.1| hypothetical protein BIFANG_02336 [Bifidobacterium angulatum DSM
           20098]
 gi|229784869|gb|EEP20983.1| hypothetical protein BIFANG_02336 [Bifidobacterium angulatum DSM
           20098]
          Length = 920

 Score = 36.2 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 21/167 (12%)

Query: 99  QTIDKIVGKEAVHQGLALETAPLLSPTLDAVRNSQLLMVLDHVNDPHNIGAILRSAVAFS 158
           + +D I+       GLA +    +   +D    + ++ V D V  P +  AI     A  
Sbjct: 615 EDLDAIIADMD---GLAAQGKTPMLIAVDG-ELAGIVAVADTV-KPDSAQAI----AALQ 665

Query: 159 CDGIITTKRYSPSESAVLAKSASGALEHIPY-IRISNLTDALQKMHSWGFQTIGLSSDSK 217
             GI  T     +E+   A +    ++H+   +R  N  D + K+ + G+ T+ +  D  
Sbjct: 666 SHGIAVTMLTGDNETTAHAVAQQVGVDHVIAGVRPENKADEIAKLQAQGY-TVAMVGDGI 724

Query: 218 KPLEQEIKND-KIALILGAEGKGLRPKTQETATSMAHLHMPGIIKAL 263
                 ++ D   A+     G G      ++A       M G ++ L
Sbjct: 725 NDAPALVRADVGFAI-----GTG-TDVAIQSADVTV---MSGSLQGL 762


>gi|213615553|ref|ZP_03371379.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 113

 Score = 35.8 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 8/115 (6%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +VL     P N G I+R          I        +   L ++     E     R  + 
Sbjct: 4   IVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFAAVQRHHDY 63

Query: 196 TDALQK---MHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQET 247
              +        +   T G  + S    +         L+ G E +GL     + 
Sbjct: 64  AAFVAAENPQRLFALTTKGTPAHSAVSYQDGDY-----LMFGPETRGLPASILDA 113


>gi|239617839|ref|YP_002941161.1| hypothetical protein Kole_1465 [Kosmotoga olearia TBF 19.5.1]
 gi|239506670|gb|ACR80157.1| conserved hypothetical protein [Kosmotoga olearia TBF 19.5.1]
          Length = 188

 Score = 35.8 bits (82), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALN-VSNAAAVAL 273
            +    + G    GL  +  +         + G   + N +S  AAVA+
Sbjct: 133 KEPFLFLFGT-SWGLPKEILDLCDYALE-PIRGNA-SFNHLSVRAAVAI 178


>gi|271502004|ref|YP_003335030.1| Hrp-dependent type III effector protein [Dickeya dadantii Ech586]
 gi|270345559|gb|ACZ78324.1| type III effector Hrp-dependent outers [Dickeya dadantii Ech586]
          Length = 428

 Score = 35.8 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 18/104 (17%)

Query: 159 CDGIITTKRYSPSESAVLAKSA------------SGALEHIPYIRISNLTDALQKMHSWG 206
             G++ T     S+     +SA            + A   +  +R  NL   LQ++   G
Sbjct: 134 VHGVLLTDTEFASDPKTPVRSASIGKRLAEQTQLAQAALSLDEVRGGNLAARLQQLSDSG 193

Query: 207 FQTIGLSSDSKKPLEQEIKNDK-IA---LILGAEGKGLRPKTQE 246
            + + L ++S++ L+  +     +A   L++G+   GL     +
Sbjct: 194 VRLVVLDAESQQDLDHIVAAAAQLAEKPLLVGS--AGLSEALAQ 235


>gi|242064862|ref|XP_002453720.1| hypothetical protein SORBIDRAFT_04g011210 [Sorghum bicolor]
 gi|241933551|gb|EES06696.1| hypothetical protein SORBIDRAFT_04g011210 [Sorghum bicolor]
          Length = 563

 Score = 35.8 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 40/135 (29%), Gaps = 23/135 (17%)

Query: 149 AILRSA--VAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNLTDAL-QKMHSW 205
              R+A   A     ++           +  ++ +G   H      ++   A+  +    
Sbjct: 317 TTFRTATFAASGFGFMMLD---------MTVENWAGPARHQAVALRASADRAVVHRCGIA 367

Query: 206 GFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPKTQETATSMAHLHMPGI-----I 260
           G+Q    +  +++          +  + G           +     A + +PG       
Sbjct: 368 GYQDTLYAHSNRQFYRDCDVYGTVDFVFGN-----AAAVLQRCDLWARVPLPGQRNTVTA 422

Query: 261 KALNVS-NAAAVALY 274
           ++ N S     + L+
Sbjct: 423 QSRNESCQRTGIVLH 437


>gi|83589803|ref|YP_429812.1| condensin subunit Smc [Moorella thermoacetica ATCC 39073]
 gi|83572717|gb|ABC19269.1| condensin subunit Smc [Moorella thermoacetica ATCC 39073]
          Length = 1187

 Score = 35.8 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 29/196 (14%)

Query: 19  HYAKLRRNHRDYKKMQSFNQKSRHTSQ--PENLFLYGVHTVSAALNNPSRKIFQLLATKN 76
           H   +R   +     +   QK R   +   E   L G+      L     ++ ++ A   
Sbjct: 399 HNELVRLEEKQAGMERVLEQKQRQLQELNNERERLEGL------LRAGEEQLGEIEANLK 452

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDK-IVGKEAVHQGLALETAPLLSPTLDAVRNSQLL 135
           AL      A+L    P++       +K + G +   + L      L     D        
Sbjct: 453 ALE--GKKASLETELPLQEADLAAREKHLAGLKEQQRLLVARLKVLRQAQADYEGFG--- 507

Query: 136 MVLDHVNDPHNIGAIL--RS---AVAFSCDGIITTKRYSPSESAVLAKSA-SGALEHIPY 189
              + V       AIL  RS   A      G++  K   P E     + A  GA + +  
Sbjct: 508 ---EGVR------AILQARSRGEAACAGVLGVVVEKIEVPGELTRAIEVALGGAAQQVLV 558

Query: 190 IRISNLTDALQKMHSW 205
              S     +Q + S 
Sbjct: 559 RTASEAERVIQFLKSR 574


>gi|195158000|ref|XP_002019882.1| GL12641 [Drosophila persimilis]
 gi|194116473|gb|EDW38516.1| GL12641 [Drosophila persimilis]
          Length = 145

 Score = 35.8 bits (82), Expect = 7.9,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 1  MNLISKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAA 60
          M    + + + I   +D    +++R +  Y++++    + R  +Q  N            
Sbjct: 5  MTPEEEARQKCITRERDRERKRIQRLNPKYRRLEKERDRERKRAQRTNE------AFRE- 57

Query: 61 LNNPSRKI 68
          L N   KI
Sbjct: 58 LENQRDKI 65


>gi|326317886|ref|YP_004235558.1| tRNA/rRNA methyltransferase SpoU [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374722|gb|ADX46991.1| tRNA/rRNA methyltransferase (SpoU) [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 277

 Score = 35.8 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 53/188 (28%), Gaps = 47/188 (25%)

Query: 137 VLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAV--LAKSASGALEHIP----YI 190
           +L   +   N+GA  R+        ++      P+        + ASGAL+ +       
Sbjct: 6   ILIQTSHAGNVGAAARAMKTMGFGDLVLVAPRWPNVLRREETIQRASGALDVLENARIVA 65

Query: 191 RISNLTDALQKM-------HSWG-----------FQTIGLSSDSKKPLEQEIKNDKIA-- 230
            +    D +  +         +G           +     S+D+  PL +      +A  
Sbjct: 66  TLDEALDGISHLCATAMTPRDFGPPTRSPREHFEWLVRRQSADAGHPLAELALEGGVAPV 125

Query: 231 ---------------------LILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAA 269
                                 + G+E  G+  +          +       +LN+  A 
Sbjct: 126 PPTDTDPASAPAAAAGEAGVAFLFGSERFGMANEDVYRCHVALSIPTNPGFGSLNLGAAI 185

Query: 270 AVALYITQ 277
            V  Y  +
Sbjct: 186 QVIAYEWR 193


>gi|153005082|ref|YP_001379407.1| DNA-directed RNA polymerase subunit beta [Anaeromyxobacter sp.
            Fw109-5]
 gi|166229284|sp|A7HCH7|RPOB_ANADF RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
            subunit beta; AltName: Full=RNA polymerase subunit beta;
            AltName: Full=Transcriptase subunit beta
 gi|152028655|gb|ABS26423.1| DNA-directed RNA polymerase, beta subunit [Anaeromyxobacter sp.
            Fw109-5]
          Length = 1416

 Score = 35.4 bits (81), Expect = 8.4,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 60/183 (32%), Gaps = 42/183 (22%)

Query: 6    KKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFL-------------- 51
            K ++++I  ++DS + K+RR       +       R      N  L              
Sbjct: 984  KDQNDEIRIIQDSAFQKIRRL------LLGKEVSGRLVDDKGNQLLKRGDVLDDALLDTV 1037

Query: 52   ----YGVHTVSAALNNPSRKIFQLLATKNALARL---DWDANLPHP----------FPVK 94
                +G   V   + +  RKI +    +  L +L   +    L               V 
Sbjct: 1038 PQRYWGEIAVEGDVQDLVRKIVENFEEQKELVKLLFGEKIGRLKKGDELPPGVIKMVKVY 1097

Query: 95   TVPPQTI---DKIVGKEAVHQGLALETAPLLS-PTLDAVRNSQLLMVLDHVNDPHNIGAI 150
                + +   DK+ G+    +G+     P    P L+  R   +++    V    N+G I
Sbjct: 1098 VAIKRKLAVGDKMAGRHGN-KGVVSRVLPEEDLPYLEDGRPVDIVLNPLGVPSRMNVGQI 1156

Query: 151  LRS 153
            L +
Sbjct: 1157 LET 1159


>gi|213618929|ref|ZP_03372755.1| putative tRNA/rRNA methyltransferase YibK [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 54

 Score = 35.4 bits (81), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 238 KGLRPKTQETA--TSMAHLHMPGIIKALNVSNAAAVALYITQNHFA 281
           +GL     +         + M    +++N+SNA +V +Y       
Sbjct: 1   RGLPASILDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQLG 46


>gi|320334873|ref|YP_004171584.1| hypothetical protein Deima_2281 [Deinococcus maricopensis DSM
           21211]
 gi|319756162|gb|ADV67919.1| hypothetical protein Deima_2281 [Deinococcus maricopensis DSM
           21211]
          Length = 297

 Score = 35.4 bits (81), Expect = 8.6,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 19/174 (10%)

Query: 77  ALARLDWDANLPHPFPVKTVPPQTIDKIVGKEAVHQGLA--LETAP-----LLSPTLDAV 129
           A       A +    P+  V  + +D +     + QG+       P      L    D++
Sbjct: 53  ADIDAAVSAAVREGRPLYQVLAEVLDAVRPDLLLTQGVCEVCAVTPGTIQDALRALPDSL 112

Query: 130 RNSQLLMVLDHVNDPHNIGAILRSAVAFSC-----DGIITTKRYSPSESAVLAKSASGAL 184
                 + LD       +G + R A A              +    + +          L
Sbjct: 113 PTDARTLSLDGKTLSGILGDVQRVADAAGVPERGEALTRAARDRWAAITPAAHAPRVLTL 172

Query: 185 EHI--PYIRISNLTDALQKMHSWGFQTIG-LSSDSKKPLEQEI--KNDKIALIL 233
           E    P+     + + ++   + G   +G    DS +    +I   N  + +++
Sbjct: 173 EWTDPPFYGGHWVPEQVE--RAGGVNVLGRAGQDSGRATWADISALNPDVIVVM 224


>gi|33593015|ref|NP_880659.1| putative oligopeptide transport integral membrane protein
           [Bordetella pertussis Tohama I]
 gi|33563390|emb|CAE42265.1| putative oligopeptide transport integral membrane protein
           [Bordetella pertussis Tohama I]
 gi|332382427|gb|AEE67274.1| putative oligopeptide transport integral membrane protein
           [Bordetella pertussis CS]
          Length = 483

 Score = 35.4 bits (81), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
              I Y  I  L   +  +   G+  +G        L Q +K+ + ALI+G+
Sbjct: 205 AMWITYAIICLLALTVSMLAG-GYHVLGTDRTGNDVLWQALKSVRTALIIGS 255


>gi|159040539|ref|YP_001539792.1| molybdenum cofactor synthesis domain-containing protein
           [Salinispora arenicola CNS-205]
 gi|157919374|gb|ABW00802.1| molybdenum cofactor synthesis domain [Salinispora arenicola
           CNS-205]
          Length = 157

 Score = 35.4 bits (81), Expect = 9.1,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 113 GLALETA-PLLSPTLDAVR---NSQLLMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRY 168
           G+  +T+ PLL+  L  +    +  +++V D   DP  +GA LR+A A   D ++T+   
Sbjct: 16  GVYADTSGPLLAAGLRELGCAVDDPIVVVPDG--DP--VGAALRTAAAEGVDVVVTSGGT 71

Query: 169 SPSESAVLAKSASGALEHIPYIRISNLTDALQKMHSWGFQTIGLS 213
             + S    +     L+H     I  + +A++        T  LS
Sbjct: 72  GINPSDRTPEVTRALLDH----EIPGIAEAVRAYSRDRVPTAVLS 112


>gi|209884583|ref|YP_002288440.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
           OM5]
 gi|209872779|gb|ACI92575.1| RNA methyltransferase TrmH, group 1 [Oligotropha carboxidovorans
           OM5]
          Length = 391

 Score = 35.4 bits (81), Expect = 9.2,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 13/150 (8%)

Query: 135 LMVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISN 194
           ++VL       NIG   R+   F    +   K      +    ++A+GA   +  + +  
Sbjct: 17  VVVLVEPQLGENIGMAARAMGNFGLTRLRLVKPRDGWPNMAAERAAAGADHILTQVEVFE 76

Query: 195 LTDAL-----------QKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGAEGKGLRPK 243
             +A             + H      +   + +++ + +  +     ++ G E  GL  +
Sbjct: 77  TVEAAVADCALLFATTARAHDQAKPVVAPEAAAREIVTEVAQGATAGILFGRERWGLTNE 136

Query: 244 TQETATSMAHLHMPGIIKALNVSNAAAVAL 273
               AT +    +     +LN++ A  V L
Sbjct: 137 EVSLATRIVTFPVNPGFASLNLAQA--VLL 164


>gi|254428520|ref|ZP_05042227.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
 gi|196194689|gb|EDX89648.1| RNA methyltransferase, TrmH family, group 1 [Alcanivorax sp. DG881]
          Length = 220

 Score = 35.4 bits (81), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 227 DKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
            ++A++ G E  GL           + + +     +LN+  A  V +Y 
Sbjct: 104 QRVAIVFGREASGLTGDEVARCDLASSIPLAQAQPSLNLGQA--VMVYA 150


>gi|23336815|ref|ZP_00121974.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
          Length = 110

 Score = 35.4 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 22/58 (37%)

Query: 5  SKKKSEKIFSLKDSHYAKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALN 62
          + K  ++++           R      ++ +  +  +  S   +  +YG ++V  AL 
Sbjct: 25 TPKAEDRVYHKAYKAKKAAERRQMADPRLAARRRVDKFASADTSDLVYGRNSVLEALR 82


>gi|296284003|ref|ZP_06862001.1| rRNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 223

 Score = 35.4 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%)

Query: 226 NDKIALILGAEGKGLRPKTQETATSMAHLHMPGIIKALNVSNAAAVALYI 275
             + A + G E  GL  +    A ++  + +     +LN++ A  +  Y 
Sbjct: 81  PGRSAFLFGPERSGLETEDVALARTILTVPIDPEFGSLNLAQAVILCAYE 130


>gi|319949973|ref|ZP_08023962.1| tRNA/rRNA methyltransferase (SpoU) [Dietzia cinnamea P4]
 gi|319436369|gb|EFV91500.1| tRNA/rRNA methyltransferase (SpoU) [Dietzia cinnamea P4]
          Length = 137

 Score = 35.4 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 49  LFLYGVHTVSAALNNPSRKIFQLLATKNALARLD--WDANLPHPFPVKTVPPQTIDKIVG 106
               G ++V AAL   +    +L  T+ AL R     DA       V  V  + I  +  
Sbjct: 42  FLAEGANSVEAALATGA--AVELFCTEAALDRFADLVDAGRSAGVAVSVVTDRAIRGLSD 99

Query: 107 KEAVHQGLALETAPLLSP 124
                 G+      +  P
Sbjct: 100 T-VTPTGIVAVCRSVTRP 116


>gi|115375837|ref|ZP_01463088.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367147|gb|EAU66131.1| RNA methyltransferase, TrmH family, group 1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 231

 Score = 35.4 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 20/147 (13%)

Query: 142 NDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIP-YIRISNLTDALQ 200
            +  N+GA  R+          T  R    +     + A  A E +    R  +L  A+ 
Sbjct: 4   RNAENLGAAARAMKNCGLSE-WTWVRPEAEDLGPARRLAVHAEELLDGVRREDSLEAAVA 62

Query: 201 KMHSWGFQTIGLSS---DSKKPLE---------QEIKNDKIALILGAEGKGLRPKTQETA 248
                    +G SS   + K+ L                 +A++ G E  GL     E  
Sbjct: 63  DC----VWVVGTSSRKVEGKRRLLPRAVGEELVARAAQGPVAIVFGDERSGLTNAEVERC 118

Query: 249 TSMAHLHMPGIIKALNVSNAAAVALYI 275
             ++ +       ++N++ A  V LY 
Sbjct: 119 HDLSAVPTDPSQPSINLAQA--VLLYA 143


>gi|33598689|ref|NP_886332.1| serine--glyoxylate aminotransferase [Bordetella parapertussis
           12822]
 gi|33574819|emb|CAE39480.1| serine--glyoxylate aminotransferase [Bordetella parapertussis]
          Length = 398

 Score = 35.4 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 21  AKLRRNHRDYKKMQSFNQKSRHTSQPENLFLYGVHTVSAALNNPSRKIFQLLATKNALAR 80
           A+L R++ D+++M + N++      P    LYG+H   A L        Q+ A     A 
Sbjct: 226 ARLPRSYWDWREMLAANERGYFPYTPATNLLYGLHEALAMLREEGLP--QVYARHRRHAH 283

Query: 81  LDWDANLPHPFPVKTVPPQT 100
               A       +  + P  
Sbjct: 284 ATRLAVAAWELELLCLDPAQ 303


>gi|33596959|ref|NP_884602.1| putative oligopeptide transport integral membrane protein
           [Bordetella parapertussis 12822]
 gi|33566410|emb|CAE37662.1| putative oligopeptide transport integral membrane protein
           [Bordetella parapertussis]
          Length = 485

 Score = 35.4 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 184 LEHIPYIRISNLTDALQKMHSWGFQTIGLSSDSKKPLEQEIKNDKIALILGA 235
              I Y  I  L   +  +   G+  +G        L Q +K+ + ALI+G+
Sbjct: 207 AMWITYAIICLLALTVSMLAG-GYHVLGTDRTGNDVLWQALKSVRTALIIGS 257


>gi|93006040|ref|YP_580477.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
 gi|92393718|gb|ABE74993.1| tRNA/rRNA methyltransferase (SpoU) [Psychrobacter cryohalolentis
           K5]
          Length = 293

 Score = 35.4 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 36/162 (22%)

Query: 136 MVLDHVNDPHNIGAILRSAVAFSCDGIITTKRYSPSESAVLAKSASGALEHIPYIRISNL 195
           +V+ +   P NIG+  R+        +       P +   ++ +A G+      I    L
Sbjct: 25  VVMVNTTLPANIGSAARAMHTMGLSRLTVVDPKLPIDDTSVSHAAGGSDLLSSAIIAPTL 84

Query: 196 TDALQKMHSWGFQTIGLSSD--------------SKKPLEQEIKN------------DKI 229
             A+             SS               +K  L+   K               I
Sbjct: 85  ESAIADCQ----LVFAASSRSRHLPRPVVTPTQAAKIMLDFIDKQSTVNGQDGINTAPNI 140

Query: 230 ALILGAEGKGLRPKTQETATSMAHL---HMPGIIKALNVSNA 268
           A++ G E +GL  +    A     +       +   LNV++A
Sbjct: 141 AILFGREDRGLTNEELAYADYHVQIDANPAYPV---LNVASA 179


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.178    0.537 

Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,885,174,929
Number of Sequences: 14124377
Number of extensions: 291644713
Number of successful extensions: 893080
Number of sequences better than 10.0: 8814
Number of HSP's better than 10.0 without gapping: 11067
Number of HSP's successfully gapped in prelim test: 3135
Number of HSP's that attempted gapping in prelim test: 861558
Number of HSP's gapped (non-prelim): 15096
length of query: 282
length of database: 4,842,793,630
effective HSP length: 137
effective length of query: 145
effective length of database: 2,907,753,981
effective search space: 421624327245
effective search space used: 421624327245
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 81 (35.4 bits)